BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (898 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254039868|gb|ACT56664.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 898

 Score =  985 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 898/898 (100%), Positives = 898/898 (100%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA
Sbjct: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL
Sbjct: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG
Sbjct: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK
Sbjct: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV
Sbjct: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK
Sbjct: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ
Sbjct: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP
Sbjct: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
           PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR
Sbjct: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI
Sbjct: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI
Sbjct: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI
Sbjct: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ
Sbjct: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI
Sbjct: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK
Sbjct: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898


>gi|15965551|ref|NP_385904.1| alanyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|307302671|ref|ZP_07582427.1| alanyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|307318519|ref|ZP_07597953.1| alanyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|7404473|sp|P27866|SYA_RHIME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15074732|emb|CAC46377.1| Alanyl-tRNA ligase [Sinorhizobium meliloti 1021]
 gi|306895859|gb|EFN26611.1| alanyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306903035|gb|EFN33626.1| alanyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 887

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 500/909 (55%), Positives = 659/909 (72%), Gaps = 37/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSMFLDYFRKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSAEEDGDRFIEIWNLVFMQYEQITKEERVDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLF+ LI ASE+ TG+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGARDPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L + +  NG+ AFKLYDT+G PLD+ QD L A+G  G+D  +F 
Sbjct: 361 KTLERGLNLLAEASADLSEGDQFNGETAFKLYDTYGFPLDLTQDALRAKG-IGVDTDAFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA+  G G   TE IWF L++K+GAT F+GYD                  
Sbjct: 420 AAMQRQKAEARANWAGSGEAATETIWFELRDKHGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ AIV+ G +VE A  G+ V++V +QTPFY E+GGQ+GDTG    +  
Sbjct: 462 -----TESAEGVILAIVKDGAVVESAAKGENVQLVLNQTPFYGESGGQVGDTGVITTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L +TD QK+ EG+FVH+  VE G ++T  +  LT+D+  R +L  NHSATHLLH AL  
Sbjct: 517 KLTVTDTQKRGEGLFVHYCTVEEGSVKTGEAAALTVDHARRARLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+  N+II QN PVVTR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIIVQNTPVVTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHVS+TG+I L+ +VSES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGLRGSKAGKPYSVELCGGTHVSATGDIGLVRVVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG+ AR++L  QDE++K+LA+ LKV   +V+GRVE + +E RKL+   
Sbjct: 697 AVGAGVRRVEALTGEAARAYLGEQDERVKTLAAALKVQPADVLGRVEALLDERRKLEREL 756

Query: 775 AKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + K +L +          +   I  V F+  ++S V+ K+LKS+ D  +K + SG++  
Sbjct: 757 TEAKKKLALAGDGQNGSGDAARDIGGVRFLGRVVSGVEPKDLKSLADDGKKSLGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG+S + KAS ++ VT+DL  + +AVDL R+++  LGG GGGGRP MAQ+GGP+G +A +
Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGGRAAE 876

Query: 888 AIAGVASFL 896
           AI  VA  L
Sbjct: 877 AIEAVAGAL 885


>gi|288940831|ref|YP_003443071.1| alanyl-tRNA synthetase [Allochromatium vinosum DSM 180]
 gi|288896203|gb|ADC62039.1| alanyl-tRNA synthetase [Allochromatium vinosum DSM 180]
          Length = 867

 Score =  946 bits (2444), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/902 (43%), Positives = 540/902 (59%), Gaps = 46/902 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+  + +R +FL++F++  HE + SS LIP NDPTL+FTN+GMV FK+ F G+E+     
Sbjct: 1   MTTSAELRASFLDYFEQRQHERVASSPLIPANDPTLLFTNAGMVQFKDAFLGRERRASNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT+   L
Sbjct: 61  AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIEYAWDYLTRVLAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              RL++TV++ED+EA  +W K  G+   +  R    DNFWSM +TGPCGPCSEIF+D  
Sbjct: 121 PPERLWVTVFEEDDEAAGIWLKEIGVDPQRFSRCGAKDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+RY+EIWNLVFMQF +        LP+ S+DTGMGLER+A V+Q 
Sbjct: 181 PAIPGGPPGSPDEDGDRYVEIWNLVFMQFNRDADGNMTPLPRPSVDTGMGLERLAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+HLI+A+ Q TG         + RVI DH+RS++FLI DG+ P NEGRGY
Sbjct: 241 VHSNYEIDLFRHLIEAAAQATGCTDLA--DKSLRVIADHIRSTAFLITDGVTPGNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRA+ +   LG + P    L+  L  EMG AYPEL  ++  +E  ++ E+ERF 
Sbjct: 299 VLRRIMRRAIRHGYRLGCSTPFFHTLVEPLAREMGDAYPELRASQSHVERLVKLEEERFA 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+ G+ LLD  ++ L  D+I  G+  FKLYDT+G P+D+  DI   RGL  +D+  F 
Sbjct: 359 ETLEHGMRLLDEAIADLSGDQI-PGETVFKLYDTYGFPVDLTADIARERGLT-LDVAGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+E Q+ RARA S    + T +       +  G T F GYD ++               
Sbjct: 417 QAMERQKERARAASQFGSAQTLD------IQIQGETDFCGYDRVQ--------------- 455

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + + A+ + GE  +   +G++  V+ D++PFY E+GGQ+GD G    +  
Sbjct: 456 --------EEATIVALYRGGESCDALEAGEEGLVILDRSPFYGESGGQVGDRGWLNTETA 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  + D QKK +G+ VH   VE G L     +   +D   RR  ++NHSATHLLH AL  
Sbjct: 508 RFGVQDTQKKGDGVLVHVGRVEEGALTVGDRVDARVDADRRRATALNHSATHLLHAALRE 567

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS + P+ LRFD +H +P++  +L +IE  VN  +  N  V TRIM+ EDA
Sbjct: 568 VLGPHVQQKGSLVGPERLRFDFSHFEPVSREQLLTIERMVNREVRANHLVETRIMSLEDA 627

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            ASGA AL G KY D+VRV+ +     G  S+ LCGGTHV + G+I L+ IVSE+ I AG
Sbjct: 628 KASGAMALFGEKYADQVRVLRM-----GEFSTELCGGTHVKAVGDIGLIKIVSETGIAAG 682

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEAITG  A   +   +E+L  LA  LK  + +V  RV ++ +  R+L+    + K 
Sbjct: 683 VRRIEAITGASALEWVEADEERLLRLAGLLKGGREDVDERVTQLIDRARRLEKEIEQLKA 742

Query: 780 QLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +               I  +  ++  +   D K L+  +D L+ K+ S +++L     + 
Sbjct: 743 KAASSAGQDLAAQAIDIQGIKTLAARLDGADPKSLRVTLDQLKDKLGSAVVVLA-TESDG 801

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S++  VT+DL DR  A DL R  A+ + GG GGGRP MAQ+GG +      A+  V  
Sbjct: 802 KVSLVAGVTKDLTDRLKAGDLIREVAEKV-GGKGGGRPDMAQAGGNDPAGLPAALELVPG 860

Query: 895 FL 896
           ++
Sbjct: 861 WV 862


>gi|94309776|ref|YP_582986.1| alanyl-tRNA synthetase [Cupriavidus metallidurans CH34]
 gi|93353628|gb|ABF07717.1| alanyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 884

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 541/910 (59%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 11  MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLTK + L 
Sbjct: 71  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLP 130

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 131 ADKLWVTVYAEDDEAYDIWAKEVGVPADRIVRIGDNKGARYASDNFWQMADTGPCGPCSE 190

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 191 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGTMTPLPKPCVDTGMGLERI 250

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+ + + T +     N  + +VI DH+R+ SFLI DG++P 
Sbjct: 251 AAVLQHVHSNYEIDLFQALIKGAGRETHIAD--LNQNSLKVIADHIRACSFLIVDGVIPG 308

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  +MG AYPEL +A+  + E L++
Sbjct: 309 NEGRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVGDLVAQMGEAYPELAEAQSRVVEVLKA 368

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  ++ L     ++L+G++AFKL+DT G PLD+ QD+   + + 
Sbjct: 369 EEERFFETIENGMSILDAAVADLKAKGGKVLDGELAFKLHDTFGFPLDLTQDVAREQEIT 428

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GYD L        
Sbjct: 429 -VDEAAFDAAMTRQREQARAAGKFKMAAG-------LEYSGEKTVFHGYDALSMDGV--- 477

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+   G  V+    GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 478 -------------------RVTALYVDGASVDTMQPGQSGVVVLDNTPFYAESGGQVGDQ 518

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +       + D  K    +F H   +  G L+   ++   +D   R +   NHSATH
Sbjct: 519 GTLVSGPAVFAVADTTKIQSDVFGHQGTLANGALKVGDTVAAQVDAVRRARTVRNHSATH 578

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS + PD  RFD +H+ P+T A+++ IE+ VN  I  N P V 
Sbjct: 579 LMHKALREVLGTHVQQKGSLVDPDKTRFDFSHNAPLTDAQIRQIEEIVNAEILSNAPTVA 638

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           ++M  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L  IV
Sbjct: 639 QVMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVTRTGDIGLFKIV 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E+ + AGIRR+EAITG  A  +L   D +L   A+ L+     +V R+ ++ ++ R L+
Sbjct: 693 VEAGVAAGIRRVEAITGDNALHYLQSLDARLNEAAAALRAQPSELVPRIGQVQDQVRALE 752

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               K K +L              +  +  ++  +   D K L+  MD L+ K+QS  I+
Sbjct: 753 KELEKLKSKLASSQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIV 812

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 813 LAAVA-DGKVSLIAGVTADATSKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLP 870

Query: 887 QAIAGVASFL 896
           +A+AGV  ++
Sbjct: 871 KALAGVTEWV 880


>gi|205830252|sp|Q1LQ59|SYA_RALME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 541/910 (59%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLTK + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 ADKLWVTVYAEDDEAYDIWAKEVGVPADRIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGTMTPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+ + + T +     N  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKGAGRETHIAD--LNQNSLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  +MG AYPEL +A+  + E L++
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVGDLVAQMGEAYPELAEAQSRVVEVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  ++ L     ++L+G++AFKL+DT G PLD+ QD+   + + 
Sbjct: 359 EEERFFETIENGMSILDAAVADLKAKGGKVLDGELAFKLHDTFGFPLDLTQDVAREQEIT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GYD L        
Sbjct: 419 -VDEAAFDAAMTRQREQARAAGKFKMAAG-------LEYSGEKTVFHGYDALSMDGV--- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+   G  V+    GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 468 -------------------RVTALYVDGASVDTMQPGQSGVVVLDNTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +       + D  K    +F H   +  G L+   ++   +D   R +   NHSATH
Sbjct: 509 GTLVSGPAVFAVADTTKIQSDVFGHQGTLANGALKVGDTVAAQVDAVRRARTVRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS + PD  RFD +H+ P+T A+++ IE+ VN  I  N P V 
Sbjct: 569 LMHKALREVLGTHVQQKGSLVDPDKTRFDFSHNAPLTDAQIRQIEEIVNAEILSNAPTVA 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           ++M  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L  IV
Sbjct: 629 QVMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVTRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E+ + AGIRR+EAITG  A  +L   D +L   A+ L+     +V R+ ++ ++ R L+
Sbjct: 683 VEAGVAAGIRRVEAITGDNALHYLQSLDARLNEAAAALRAQPSELVPRIGQVQDQVRALE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               K K +L              +  +  ++  +   D K L+  MD L+ K+QS  I+
Sbjct: 743 KELEKLKSKLASSQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 803 LAAVA-DGKVSLIAGVTADATSKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLP 860

Query: 887 QAIAGVASFL 896
           +A+AGV  ++
Sbjct: 861 KALAGVTEWV 870


>gi|293604526|ref|ZP_06686931.1| alanine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292817107|gb|EFF76183.1| alanine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 874

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/911 (43%), Positives = 549/911 (60%), Gaps = 53/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF+  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y   
Sbjct: 1   MKSSEIRRQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IFFD G  I GG PGS  E+G+RYIEIWNLVFMQFE+  +     LP+  +DTGMGLER+
Sbjct: 181 IFFDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAEGNMPRLPRPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI A+ + TG+K   NN  + +VI DH+R+ SFLI DG++P+
Sbjct: 241 AAVLQGVHSNYEIDLFQKLIHAAARETGVKDLENN--SLKVIADHIRACSFLIVDGVIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL      + + L+ 
Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELASMADRVAQVLKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERFG+TL+ G+ +LD  L+++ K  +L+G   F LYDT+G P+D+  DI   R    I
Sbjct: 359 EEERFGETLEHGMRILDTALANVPKGGVLDGTTLFTLYDTYGFPVDLTADICRERD-VEI 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F  ++E QR +ARA      +         L  +   T+F GY+ L          
Sbjct: 418 DMPGFEVSMERQRDQARAAGKFKMAEG-------LSYEGADTRFEGYEKLELDNV----- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+   G  V++  +GQ   VV D TPFYAE+GGQ+GDTG 
Sbjct: 466 -----------------KVTALYVDGTQVQQVQAGQNAVVVLDATPFYAESGGQVGDTGL 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              DG+R  + D  K   G+F HH ++E G L    +L+  +D   R +   NHSATHL+
Sbjct: 509 LQADGVRFAVADTLKIQNGVFGHHGVLESGSLSVGDTLLARVDAVRRARTVRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  +  RFD     P+T+ ++  +E  VN  +  N P V ++
Sbjct: 569 HKALRQVLGAHVQQRGSLVDAEKTRFDFAQDAPMTAEQIARVEAIVNAEVLANQPTVAQV 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IVSE
Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVSRTGDIGLFKIVSE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEAITG  A + +  Q+  L  +A  L+ +  +V  R+ ++ E+ + L+  
Sbjct: 683 GGVAAGVRRIEAITGDNALAWVQNQNALLTQIAGMLRSTPADVPARIAQVQEQIKALEKD 742

Query: 774 HAKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             + + +L           +  ++  +  ++  I +VD K L+ ++D L+ +++  +++L
Sbjct: 743 LEQSRNKLAASAGNDLATSAAVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              S + K SV+  VT DL DR  A DL    A  + GG GGGRP MA  GG +      
Sbjct: 803 ATGSADGKISVVGGVTADLTDRIKAGDLVGFVASQV-GGKGGGRPDMAMGGGTDLAALPA 861

Query: 888 AIAGVASFLKK 898
           AIAGV  ++ +
Sbjct: 862 AIAGVQKWVDE 872


>gi|187478846|ref|YP_786870.1| alanyl-tRNA synthetase [Bordetella avium 197N]
 gi|123514444|sp|Q2KY72|SYA_BORA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115423432|emb|CAJ49966.1| alanyl-tRNA synthetase [Bordetella avium 197N]
          Length = 873

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/911 (43%), Positives = 548/911 (60%), Gaps = 54/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FFQ  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+EK  Y   
Sbjct: 1   MKSSEIRQKFLQFFQSKGHSIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKEKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT  + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 VEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMTPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI A+ + TG++    +  + +VI DH+R+ SFLI DG++P+
Sbjct: 241 AAVLQGVHSNYEIDLFQKLITAAARETGVQD--LHDNSLKVIADHIRACSFLIVDGVIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG T+P    L+P L  +MG AYPEL      + + L+ 
Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKPFFYRLVPDLVAQMGEAYPELANMAERVGQVLKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERFG+TL+ G+ +LD  L+ + K  +L+G+  F LYDT+G P+D+  DI   R    I
Sbjct: 359 EEERFGETLEHGMKILDVALAQVPKGGLLDGNTLFTLYDTYGFPVDLTADICRER-EVEI 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F  A+E QR +ARA      +         L  +   T+F GY+ L  S       
Sbjct: 418 DMAGFEAAMERQRDQARAAGKFKMAEG-------LNYEGAQTRFEGYEQLELSG------ 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V A+   G   ++  +GQ+  VV D TPFYAE+GGQ+GDTG 
Sbjct: 465 ----------------AKVTALYVDGTQTDQVRAGQQAVVVLDATPFYAESGGQVGDTGL 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            + DG+R  + D  K   G+F HH ++E G+L+   +L+  +D   R +   NHSATHL+
Sbjct: 509 LVADGLRFAVADTLKVQAGVFGHHGLLEEGVLKVGDTLLARVDAVRRARTVRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     R+
Sbjct: 569 HKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQAAQARV 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IVSE
Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVSRTGDIGLFKIVSE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RR+EAITG  A   +  Q+  L+  A  L+     +  R+ ++ ++ + L+  
Sbjct: 683 GGVAAGVRRVEAITGDNALVWVQEQNALLQRAAGVLRSPVAELPERIAQVQDQVKALEKD 742

Query: 774 HAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             + + +L         D S  +I  V  ++ +I++VD K L+ ++D L+ K++  I++L
Sbjct: 743 LEQARAKLAASAGNDLADKSAVEIKGVKVLAAVINDVDPKALRGMVDNLKDKLKPAIVLL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              S + K S++  VT D   +  A DL    A  + GG GGGRP MA  GG +      
Sbjct: 803 AA-SADGKISLVGGVTADQTAKVKAGDLVGFVAAQV-GGKGGGRPDMAMGGGTDVAALPA 860

Query: 888 AIAGVASFLKK 898
           AIA V  ++ +
Sbjct: 861 AIASVQDWVNE 871


>gi|293392770|ref|ZP_06637088.1| alanine-tRNA ligase [Serratia odorifera DSM 4582]
 gi|291424629|gb|EFE97840.1| alanine-tRNA ligase [Serratia odorifera DSM 4582]
          Length = 875

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/910 (42%), Positives = 554/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKNDAIAYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W+   G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFNIWQNEIGIPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  +VTG      +  + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRTLIEAVAKVTGATD--LDNKSLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL   + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIGVMGPAADELKSQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+E QR RAR       S      + SL    GA++F GYD          
Sbjct: 420 -VDEAGFEAAMEAQRRRARE------SSGFGADYNSLIRVDGASEFCGYDH--------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         +   + + A+ + G+ V+E  +G++  VV D TPFY E+GGQ+GD 
Sbjct: 464 --------------DQQQAKITALFRDGQPVDEIHAGEEAVVVLDATPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK       H   + +G+L+   S+   ID   R ++ +NHSATH
Sbjct: 510 GILKSAAAEFVVGDTQKYG-QAIGHQGKLAQGVLKVGDSVDALIDQVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   +++++ED VN  + +NLPV T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRAVEDLVNQQVRRNLPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA   GA AL G KY+D VRV+++     G  S+ LCGGTH S TG+I L  I 
Sbjct: 629 EVMALDDAKEKGAMALFGEKYDDHVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIATLHQQSDLLQEVAHLVKGDGNNLSEKVRAVLDRTRTLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q    +         ++  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKDQQAALESASLSSKAKQVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + E K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + N   
Sbjct: 804 LATTA-EGKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGSDVNALP 861

Query: 887 QAIAGVASFL 896
            A+  V +++
Sbjct: 862 AALDSVEAWV 871


>gi|222086162|ref|YP_002544694.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
 gi|221723610|gb|ACM26766.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
          Length = 886

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 508/896 (56%), Positives = 656/896 (73%), Gaps = 36/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYTT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKEF L
Sbjct: 61  ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D++AF LWKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDDAFNLWKKIAGLSDDKIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ  KQER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQITKQERVDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF+ LI+ASE+ TG+K EG +  +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFRALIEASEEATGVKAEGEHRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  +MG AYPEL++A+ L  ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALVQQMGRAYPELVRAEALTSETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   S L K + L+G+ AFKLYDT+G PLD+ QD L ARG  G+DI SF 
Sbjct: 361 KTLERGLSLLNDATSTLHKGDSLDGETAFKLYDTYGFPLDLTQDALRARG-IGVDISSFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ AR+H  G G   TE IWF LKEK+GAT+F+GYD                  
Sbjct: 420 DAMERQKAEARSHWTGSGDKATETIWFELKEKHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++AIV+ G  V+ A +G KV+++ +QTPFY E+GGQ+GDTG    D  
Sbjct: 462 -----TEVAEGVIQAIVKDGVAVDSASAGDKVQIIVNQTPFYGESGGQMGDTGVISSDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L ++D QKK EG+FVH A V  G ++T  ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 517 KLAVSDTQKKGEGLFVHIATVSDGTIKTGDAVVLTVDHNRRSRLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTH S+TG+I L+ I+ +S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGVRGAKAGKPYSIELCGGTHASATGQIGLIRILGDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR +L  QD+++K+LA+ LKV   +VV RVE + +E RKL+   
Sbjct: 697 AVGAGVRRIEAVTGESARDYLAEQDDRVKALATALKVQPTDVVSRVEALMDERRKLEREL 756

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  K +L +         +   I  V F+   IS VD K+LK + D  +  + SG++ L+
Sbjct: 757 ADAKRKLAMGGGQGGSADAVRDINGVKFLGKAISGVDPKDLKGLADEGKTSLGSGVVALI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           G+S++ KAS ++ VT+DL+ RF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 817 GVSEDGKASAVVAVTDDLIGRFSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGAK 872


>gi|222148884|ref|YP_002549841.1| alanyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|221735870|gb|ACM36833.1| alanyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 887

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/909 (53%), Positives = 645/909 (70%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+ NGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNDIRSTFLDYFKTNGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW+L+T+EF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWNLITREFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EAF LWKKI+GL  +KIIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DRDKLCVTVYHTDDEAFGLWKKIAGLPEEKIIRIGTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ  K++R  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQYEQVTKEQRVDLPRPSIDTGMGLERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF+ LI AS  +TG+  EG    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFRALIDASVDLTGVPAEGERRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P++  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAELLGSRDPMIYKLLPVLVQQMGRAYPELVRAEALISETLKLEENRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K + ++G+ AFKLYDT+G PLD+ QD L ARG  G+DI  FN
Sbjct: 361 KTLERGLSLLSDATATLNKGDSIDGETAFKLYDTYGFPLDLTQDALRARG-IGVDITGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA   G G    E +WF LK+K+GAT+F+GY                   
Sbjct: 420 DAMQRQKAEARASWSGSGDKAMETVWFELKDKHGATEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       ++A+V+ G ++E+A +G+ V+VV +QTPFY E+GGQ+GDTG  +GDG 
Sbjct: 461 ----SAESAEGEIQALVRDGAVIEQATAGENVQVVVNQTPFYGESGGQVGDTGEIVGDGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++ D  KK EG+FVH A V  G +R    + L +D+  R +L  NHSATHLLH AL  
Sbjct: 517 VLEVRDTLKKGEGLFVHVATVREGTVRAGTVVALNVDHARRSRLRANHSATHLLHEALRD 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS + P+ LRFD++H KP+T+ ELK +ED  N+II QN  V TR+M  +DA
Sbjct: 577 VLGSHVAQKGSLVAPERLRFDISHPKPVTAEELKIVEDMANEIIVQNAAVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHVS+TG+I L+ +V+ES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTVVRGPKAGRPYSIELCGGTHVSATGDIGLVRLVAES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR++L  QDE++K+LAS LKV   +VV RVE + +E RKL+   
Sbjct: 697 AVGAGVRRIEALTGESARAYLAEQDERVKALASALKVQPVDVVSRVEALVDERRKLEREL 756

Query: 775 AKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  K +L +   S        ++  + F+   ++ +D K+LK + D  +  + SG+++L+
Sbjct: 757 ADAKRKLAMGGGSTGAADVPRELGGIKFIGKQLAGIDPKDLKGMADEAKSVLGSGVVLLI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++++ KAS +  VT DL  + +AVDL R+++  LGG GGGGRP MAQ+GGP+G KAD A
Sbjct: 817 AVAEDGKASAVASVTGDLTSKVSAVDLVRIASSALGGKGGGGRPDMAQAGGPDGAKADDA 876

Query: 889 IAGVASFLK 897
           I  VA  ++
Sbjct: 877 IEAVAKAIE 885


>gi|150396732|ref|YP_001327199.1| alanyl-tRNA synthetase [Sinorhizobium medicae WSM419]
 gi|205830211|sp|A6U9N4|SYA_SINMW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150028247|gb|ABR60364.1| alanyl-tRNA synthetase [Sinorhizobium medicae WSM419]
          Length = 887

 Score =  943 bits (2437), Expect = 0.0,   Method: Composition-based stats.
 Identities = 495/894 (55%), Positives = 653/894 (73%), Gaps = 37/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSMFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQYEQITKEERVDLPRPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLF+ LI ASE+ TG+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAQDPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + +  NG+ AFKLYDT+G PLD+ QD L A+G  G+D  +F 
Sbjct: 361 KTLERGLNLLEEASADLSEGDQFNGETAFKLYDTYGFPLDLTQDALRAKG-IGVDTDAFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA+  G G   TE IWF L++K+GAT F+GYD                  
Sbjct: 420 AAMQRQKAEARANWTGSGDAATETIWFELRDKHGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++AIV+ G +VE A  G+ V++V +QTPFY E+GGQ+GDTG    +  
Sbjct: 462 -----TESAEGVIQAIVRDGTVVESASKGETVQLVLNQTPFYGESGGQVGDTGVVTTESG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L +TD QK+ EG+FVH+ +VE G ++T  +  L +D+  R +L  NHSATHLLH AL  
Sbjct: 517 KLTVTDTQKRGEGLFVHYCVVEEGSVKTGEAAALAVDHARRTRLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HVSQ GS + P+ LRFDV+H KP+TS ELK +E+  N+II QN PVVTR+M+ +DA
Sbjct: 577 VLGTHVSQKGSLVAPERLRFDVSHPKPMTSEELKVVEEMANEIIVQNTPVVTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHVS+TG+I L+ IVSES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGLHGSKAGKAYSVELCGGTHVSATGDIGLVRIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ +G+RR+EA+TG+ AR++L  QDE++K+LA+ LKV   +V+GRVE + +E RKL+   
Sbjct: 697 AVGSGVRRVEALTGEAARAYLGEQDERVKALAAALKVQPSDVLGRVESLLDERRKLEREL 756

Query: 775 AKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + K +L +          +  +I  V F+  ++S V+ K+LKS+ D  +K + SG++  
Sbjct: 757 TEAKKKLALAGDGQNGSGEAAREIGGVRFLGRVVSGVEPKDLKSLADDGKKTLGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           VG+S + KAS ++ VT+DL  + +AVDL R+++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPD 870


>gi|317403428|gb|EFV83940.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans C54]
          Length = 874

 Score =  943 bits (2437), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/911 (43%), Positives = 544/911 (59%), Gaps = 53/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF+  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y   
Sbjct: 1   MKSSEIRQQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+        LP+  +DTGMGLER+
Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPRLPRPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI A+ + TG+K   NN  + +VI DH+R+ SFLI DG++P+
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIAAAARETGVKDLENN--SLKVIADHIRACSFLIVDGVIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG T P    L+P L  EMG AYPEL      + + L+ 
Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTRPFFHRLVPDLVAEMGEAYPELAATAERVAQVLKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERFG+TL+ G+ +LDG L+++ K   L+G   F LYDT+G P+D+  DI   R    +
Sbjct: 359 EEERFGETLEHGMRILDGALANVPKGGQLDGTTLFTLYDTYGFPVDLTADICRER-EVDV 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F  A+E QR +ARA      +         L  +   T+F GY+ L          
Sbjct: 418 DMAGFEVAMERQRDQARAAGKFKMAEG-------LSYEGAETRFEGYEKLELDNV----- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+   G  V++  +GQ   VV D TPFYAE+GGQ+GDTG 
Sbjct: 466 -----------------KVTALYVDGTQVQQVQAGQSAVVVLDATPFYAESGGQVGDTGL 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D  K   G+F HH  +E G L    +++  +D   R +   NHSATHL+
Sbjct: 509 LEAAGVRFAVGDTLKIQSGVFGHHGTLEEGKLAVGDTVLARVDAVRRARTVRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS + PD  RFD     P+T+ ++  +E  VN  I  N P V ++
Sbjct: 569 HKALRQVLGAHVQQRGSLVDPDKTRFDFAQDAPLTAEQIARVEAIVNAEILANQPTVAQV 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IVSE
Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVGRTGDIGLFKIVSE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEAITG  A + +  Q   L  +A  L+ +  ++  R+ ++ ++ ++L+  
Sbjct: 683 GGVAAGVRRIEAITGDNALAWVQNQSALLAQVAGMLRSTPADLPARISQVQDQVKQLEKD 742

Query: 774 HAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             + + +L           +  ++  +  ++  I +VD K L+ ++D L+ +++  +++L
Sbjct: 743 LEQSRSKLAASAGNDLASSAAVEVKGIKLLAASIGDVDPKALRGMVDNLKDRLKPAVVLL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              S + K SV+  VT DL +R  A DL    A  + GG GGGRP MA  GG +      
Sbjct: 803 ATGSADGKISVVGGVTADLTNRIKAGDLVGFVASQV-GGKGGGRPDMAMGGGTDIAALPA 861

Query: 888 AIAGVASFLKK 898
           AIA V  ++ +
Sbjct: 862 AIASVQKWVDE 872


>gi|311105349|ref|YP_003978202.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310760038|gb|ADP15487.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 874

 Score =  943 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/911 (43%), Positives = 546/911 (59%), Gaps = 53/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF+  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y   
Sbjct: 1   MKSSEIRQQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+        LP+  +DTGMGLER+
Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPRLPRPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ+  +NY+IDLF+HLI A+ + TG+K       + +VI DH+R+ SFLI DG++P+
Sbjct: 241 AAVLQDVHSNYEIDLFQHLIAAAARETGIK--NLEDNSLKVIADHIRACSFLIVDGVIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL      + + L+ 
Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGDAYPELAATADRVAQVLKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERFG+TL+ G+ +LD  L+++ K   L+G   F LYDT+G P+D+  DI   R L  +
Sbjct: 359 EEERFGETLEHGMRILDSALANVPKGGQLDGMTLFTLYDTYGFPVDLTADICREREL-DV 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F  A+E QR +ARA      +         L  +   T+F GY+ L          
Sbjct: 418 DMAGFEVAMERQRDQARAAGKFKMAEG-------LSYEGADTRFEGYEKLELDGV----- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+   G  V++  +GQ   VV D TPFYAE+GGQ+GDTG 
Sbjct: 466 -----------------KVTALYVDGTQVQQVKAGQSAVVVLDATPFYAESGGQVGDTGL 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              DG+R  + D  K   G+F HH  +E G L    +L+  +D   R +   NHSATHL+
Sbjct: 509 LEADGVRFAVADTLKIQAGVFGHHGELESGTLSVGDTLLARVDAVRRARTVRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS + PD  RFD     P+T+ ++  +E  VN  I  N P V ++
Sbjct: 569 HKALRQVLGAHVQQRGSLVDPDKTRFDFAQDAPLTAEQIARVEAIVNAEILANQPTVAQV 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IVSE
Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVSRTGDIGLFKIVSE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEAITG  A + +  Q+  L  +A  L+ +  ++  R+ ++ E+ + L+  
Sbjct: 683 GGVAAGVRRIEAITGDNALAWVQNQNALLTQVAGMLRSTPADLPARIAQVQEQVKSLEKD 742

Query: 774 HAKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             + + +L           +  ++  +  ++  I +VD K L+ ++D L+ +++  +++L
Sbjct: 743 LEQSRNKLAASAGNDLATSAAVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              S + K SV+  VT DL  R  A DL    A  + GG GGGRP MA  GG +      
Sbjct: 803 ATGSADGKISVVGGVTADLTGRVKAGDLVGFVAAQV-GGKGGGRPDMAMGGGTDLAALPA 861

Query: 888 AIAGVASFLKK 898
           AIA V  ++ +
Sbjct: 862 AIASVQKWVDE 872


>gi|157369088|ref|YP_001477077.1| alanyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|157320852|gb|ABV39949.1| alanyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 892

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 555/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 20  KSTAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 79

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 80  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGENWFN 139

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EAF +W++  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 140 LPKERLWVTVYETDDEAFDIWQQQIGVPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 199

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLE
Sbjct: 200 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLE 259

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF  LI A  +VTG      +  + RVI DH+RS +FL++DG+ 
Sbjct: 260 RIAAVLQHVNSNYEIDLFSKLIAAVAKVTGATD--LDNKSLRVIADHIRSCAFLVSDGVT 317

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + + L+E+ L
Sbjct: 318 PSNEGRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIEVMGPAADELKRQQSLVEQVL 377

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+++F +TL+RGL LLD  L++L   + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 378 KTEEDQFARTLERGLTLLDEELANLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 436

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + S+    GA+QF GYD          
Sbjct: 437 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSMIRVDGASQFSGYDH--------- 480

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G+ V E  +G++  VV D+TPFY E+GGQ+GD 
Sbjct: 481 --------------EQQQSTVTALFRDGQPVNEIHAGEEAVVVLDETPFYGESGGQVGDK 526

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         +++D QK  +    H   +  G L+    +   ID   R ++ +NHSATH
Sbjct: 527 GVLKAANADFEVSDTQKYGQ-AIGHQGKLSHGSLKVNDRVDAKIDTVRRNRIRLNHSATH 585

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++++ED VN  I +NLPV T
Sbjct: 586 LLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRTVEDLVNQQIRRNLPVQT 645

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA   GA AL G KY+D VRV+++     G  S+ LCGGTH S TG+I L  I+
Sbjct: 646 EVMALDDAKGKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 700

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG  A + L  Q++ L+ +A  +K    N+  +V  + +  R L+
Sbjct: 701 SESGTAAGIRRIEAVTGDGAIATLHQQNDLLQDVAHLVKGDSNNLTDKVRAVLDRTRALE 760

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +  V++K L++++D L+ ++ S II+
Sbjct: 761 KELQQLKDQQAAQESASLSSKAKMVNGVQLLVSQLDNVEAKMLRTMVDDLKNQLGSAIIV 820

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 821 LATTA-DDKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGTDVSALP 878

Query: 887 QAIAGVASFL 896
            A+  V +++
Sbjct: 879 AALDSVEAWV 888


>gi|327394965|dbj|BAK12387.1| alanyl-tRNA synthetase AlaS [Pantoea ananatis AJ13355]
          Length = 875

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 550/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQEK  Y   
Sbjct: 3   KSTAEIRQAFLDFFNSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQEKRDYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWELLTGEQWFK 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYDIWANDIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF+ LI+A  +VTG      N  + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFQTLIEAVAKVTGATD--LNNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG+A  EL + +  +E  L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIQVMGAAGEELQRQQAQVENVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE+E+F KTL+RGL LLD  L+ L   + L+G+  F+LYDT G P D+  D+   R L 
Sbjct: 361 KSEEEQFAKTLERGLALLDEELAKLQ-SDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR              + ++     A+ F GY+ L        
Sbjct: 420 -IDEAGFEKAMEQQRQRAREA------SGFGADYSNVIRIDAASSFKGYEQLD------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ VKA+   GE V+   +GQ   +V D+TPFY E+GGQ+GDT
Sbjct: 466 ----------------LTATVKALFVNGEAVDALSAGQDAVIVLDETPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     + D QK  +    H   +  G LR    L   +D   R ++ +NHSATH
Sbjct: 510 GELKGNNALFSVQDTQKYGQ-AIGHIGKLSSGQLRVGDRLEAVVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NLPV T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ E A A GA AL G KY+ +VRV+++     G  S  LCGGTH + TG+I L  I 
Sbjct: 629 RVMDLEAAKAKGAMALFGEKYDQQVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEAITG+ A + +  Q  +L+ +A  +K +  N+  +V  + +  R L+
Sbjct: 684 AESGTAAGIRRIEAITGEAALAQVYAQSSQLQDIAQLVKANSSNLNEKVRGLVDHLRSLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++ +        +  V  +   +S  D K L++++D L+ ++ S II+
Sbjct: 744 KELQQLRDQQAAQESAQLGNHAVDVKGVKLLVTELSNTDPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT+DL DR  A +L    A  + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRVKAGELIAELAPKV-GGKGGGRPDMAQAGGSDATALK 861

Query: 887 QAIAGVASFL 896
            A+AGV  ++
Sbjct: 862 GALAGVEGWV 871


>gi|325293275|ref|YP_004279139.1| Alanyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325061128|gb|ADY64819.1| Alanyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 897

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/897 (54%), Positives = 642/897 (71%), Gaps = 37/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 11  MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLESRPYST 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 71  AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAITHAWNLITKEFGI 130

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 131 DRNRLLVTVYHTDDEAFNLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 190

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER++ +LQ 
Sbjct: 191 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLTKEERIDLPRPSIDTGMGLERISALLQG 250

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DLF+ LI AS + TG+  EG    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 251 KHDNYDTDLFRALISASVEATGVPAEGEKRASHRVIADHLRSSAFLIADGVLPSNEGRGY 310

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPL+  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 311 VLRRIMRRAMRHAELLGSREPLIYKLLPALIQQMGRAYPELVRAEALISETLKLEETRFR 370

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    S L K ++L+G+ AFKLYDT+G PLD+ QD L AR   G+DI  F 
Sbjct: 371 KTLERGLSLLSDATSTLHKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 429

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF LKEK GAT+F+GYD                  
Sbjct: 430 DAMQRQKAEARSHWAGSGDKATETVWFELKEKLGATEFLGYD------------------ 471

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++AIV+ G+ V+ A  G+ V++V +QTPFY E+GGQ+GDTG   GD  
Sbjct: 472 -----TETAEGVIQAIVKDGKSVDSAAEGETVQIVVNQTPFYGESGGQMGDTGVISGDNG 526

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +++ QKK EG+FVH   V +G L+ + ++ LT+D+  R +L  NHSATHLLH AL  
Sbjct: 527 TFTVSETQKKGEGLFVHSGTVSKGGLKLDDAVQLTVDHDRRSRLRANHSATHLLHEALRE 586

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +E+  N+I+ QN PVVTR+M+ +DA
Sbjct: 587 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKVVEEMANEIVLQNSPVVTRLMSVDDA 646

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV++TG+I L+ I+ ES
Sbjct: 647 IAEGAMALFGEKYGDEVRVVSMGTGVHGAKANRPYSVELCGGTHVAATGQIGLIRILGES 706

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TGQ A ++L  QDE++K+LAS LKV  G+V+ RVE + +E +KL+   
Sbjct: 707 AVGAGVRRLEAVTGQGALAYLSEQDERVKALASSLKVQPGDVLSRVEGLLDERKKLEREL 766

Query: 775 AKRKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           A  + +L               ++A VNF++  +S +D+K+LK + D  +  I SG+++L
Sbjct: 767 ADARKKLAMGGGSSDAGANDVQQVAGVNFLAKSLSGIDAKDLKGLADEAKANIGSGVVLL 826

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + +S++ KAS +  VTEDL  RF+AVD+ R ++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 827 IAVSEDGKASAVAAVTEDLTGRFSAVDIVRTASAALGGKGGGGRPDMAQAGGPDGAK 883


>gi|167587422|ref|ZP_02379810.1| alanyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 874

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/912 (41%), Positives = 536/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTESRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +     N  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISD--LNNNSLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 509 GVLANASTRFAVGDTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L         L   ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELALQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 AALAGVKGWVEE 872


>gi|159184958|ref|NP_354854.2| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|22096194|sp|Q8UE87|SYA_AGRT5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|159140236|gb|AAK87639.2| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 887

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 485/897 (54%), Positives = 641/897 (71%), Gaps = 37/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLESRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAITHAWNLITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DRNRLLVTVYHTDDEAFNLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER++ +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLTKEERIDLPRPSIDTGMGLERISALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DLF+ LI AS + TG+  EG +  +HRVI DHLRSS+FLIADG+LP++EGRGY
Sbjct: 241 KHDNYDTDLFRALIAASVEATGVPAEGEHRASHRVIADHLRSSAFLIADGVLPSSEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PL+  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAELLGSRDPLIYRLLPALIQQMGRAYPELVRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    S L K ++L+G+ AFKLYDT+G PLD+ QD L AR   G+DI  F 
Sbjct: 361 KTLERGLSLLSDATSTLHKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF LKEK+GAT+F+GYD                  
Sbjct: 420 DAMQRQKAEARSHWAGSGDKATETVWFELKEKFGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++AIV+ G+ V+ A  G+ V +V +QTPFY E+GGQ+GDTG  +GD  
Sbjct: 462 -----TESAEGVIQAIVRDGKEVDSAAEGETVHIVVNQTPFYGESGGQMGDTGVIVGDAG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++  QKK EG+FVH   V +G L+   ++ LT+D+  R +L  NHSATHLLH AL  
Sbjct: 517 TFDVSGTQKKGEGLFVHSGTVSKGGLKVNEAVQLTVDHDRRSRLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN PVVTR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKVVEDMANEIVLQNSPVVTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV++TG+I L+ I+ ES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVAATGQIGLIRILGES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ +G+RR+EA+TGQ A ++L  QDE++K+LAS LKV  G+V+ RVE + +E +KL+   
Sbjct: 697 AVGSGVRRLEAVTGQGALAYLAEQDERVKALASSLKVQPGDVLSRVEGLLDERKKLEREL 756

Query: 775 AKRKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           A  + +L               ++A VNF++  +S +D+K+LK + D  +  + SG+++L
Sbjct: 757 ADARKKLAMGGGSSDAGANDVQQVAGVNFLAKSLSGIDAKDLKGLADEAKANLGSGVVLL 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + +S + KAS +  VTEDL  RF+AVD+ R ++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 817 IAVSDDGKASAVAAVTEDLTGRFSAVDIVRTASAALGGKGGGGRPDMAQAGGPDGTK 873


>gi|291618585|ref|YP_003521327.1| AlaS [Pantoea ananatis LMG 20103]
 gi|291153615|gb|ADD78199.1| AlaS [Pantoea ananatis LMG 20103]
          Length = 875

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/910 (43%), Positives = 549/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQEK  Y   
Sbjct: 3   KSTAEIRQAFLDFFNSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQEKRDYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWELLTGEQWFK 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYDIWANDIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF+ LI+A  +VTG      N  + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFQTLIEAVAKVTGATD--LNNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG+A  EL + +  +E  L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIQVMGAAGEELQRQQAQVENVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE+E+F KTL+RGL LLD  L+ L   + L+G+  F+LYDT G P D+  D+   R L 
Sbjct: 361 KSEEEQFAKTLERGLALLDEELAKLQ-GDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR              + ++     A+ F GY+ L        
Sbjct: 420 -IDEAGFEKAMEQQRQRAREA------SGFGADYSNVIRIDAASSFKGYEQLD------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ VK +   GE V+   +GQ   +V D+TPFY E+GGQ+GDT
Sbjct: 466 ----------------LTATVKGLFVNGEAVDALSAGQDAVIVLDETPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     + D QK  +    H   +  G LR    L   +D   R ++ +NHSATH
Sbjct: 510 GELKGNNALFSVQDTQKYGQ-AIGHIGKLSSGQLRVGDCLEAVVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NLPV T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ E A A GA AL G KY+ +VRV+++     G  S  LCGGTH + TG+I L  I 
Sbjct: 629 RVMDLEAAKAKGAMALFGEKYDQQVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEAITG+ A + +  Q  +L+ +A  +K +  N+  +V  + +  R L+
Sbjct: 684 AESGTAAGIRRIEAITGEAALAQVYAQSSQLQDIAQLVKANSSNLNEKVRGLVDHLRSLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++ +        +  V  +   +S  D K L++++D L+ ++ S II+
Sbjct: 744 KELQQLRDQHAAQESAQLGNHAVDVKGVKLLVTELSNTDPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT+DL DR  A +L    A  + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRVKAGELIAELAPKV-GGKGGGRPDMAQAGGSDATALK 861

Query: 887 QAIAGVASFL 896
            A+AGV  ++
Sbjct: 862 GALAGVEGWV 871


>gi|205830246|sp|A8GA09|SYA_SERP5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 875

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 555/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EAF +W++  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAFDIWQQQIGVPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF  LI A  +VTG      +  + RVI DH+RS +FL++DG+ 
Sbjct: 243 RIAAVLQHVNSNYEIDLFSKLIAAVAKVTGATD--LDNKSLRVIADHIRSCAFLVSDGVT 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + + L+E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIEVMGPAADELKRQQSLVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+++F +TL+RGL LLD  L++L   + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KTEEDQFARTLERGLTLLDEELANLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + S+    GA+QF GYD          
Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSMIRVDGASQFSGYDH--------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G+ V E  +G++  VV D+TPFY E+GGQ+GD 
Sbjct: 464 --------------EQQQSTVTALFRDGQPVNEIHAGEEAVVVLDETPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         +++D QK  +    H   +  G L+    +   ID   R ++ +NHSATH
Sbjct: 510 GVLKAANADFEVSDTQKYGQ-AIGHQGKLSHGSLKVNDRVDAKIDTVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++++ED VN  I +NLPV T
Sbjct: 569 LLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRTVEDLVNQQIRRNLPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA   GA AL G KY+D VRV+++     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 EVMALDDAKGKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG  A + L  Q++ L+ +A  +K    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGIRRIEAVTGDGAIATLHQQNDLLQDVAHLVKGDSNNLTDKVRAVLDRTRALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +  V++K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKDQQAAQESASLSSKAKMVNGVQLLVSQLDNVEAKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATTA-DDKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGTDVSALP 861

Query: 887 QAIAGVASFL 896
            A+  V +++
Sbjct: 862 AALDSVEAWV 871


>gi|148256734|ref|YP_001241319.1| alanyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
 gi|205829994|sp|A5EML9|SYA_BRASB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146408907|gb|ABQ37413.1| alanyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
          Length = 896

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 473/916 (51%), Positives = 618/916 (67%), Gaps = 44/916 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL FF  NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLNFFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWKLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY +D+EAF LWKKI+GL   +IIRI  +DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLTATVYIDDDEAFGLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG PGS E +G+R+IEIWNLVFMQ+EQ     R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DKVWGGPPGSPEADGDRFIEIWNLVFMQYEQLEGGVRNPLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A   +T    +G    + RVI DHLR+SSFLI+DG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAIADLTNADPQGPQKASLRVIADHLRASSFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPELI+A+ LI+ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMHKLVGALTREMGQAYPELIRAEALIKETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   S L K ++ +GDVAF LYDT+G PLD+ QD L +RG   +D  SF 
Sbjct: 361 KTLERGLAILDEKSSTLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRG-ISVDQASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR++ARA   G G   TE +WF L+EK GAT+F+GY+                  
Sbjct: 420 DAMERQRAKARAAWAGSGEAATENVWFPLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G  VE   +G+   +V +QTPFY E+GGQ+GDTG   GDG+
Sbjct: 462 -----TETAEGAVTALVKDGAEVEGLKAGESGAIVLNQTPFYGESGGQVGDTGVMSGDGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R++ITD QKKA  +FVH   VE+G L+   +L L +D+  R  +  NHSATH+LH AL  
Sbjct: 517 RVRITDTQKKAGDLFVHIGTVEQGTLKLGAALQLEVDHGRRSAIRANHSATHILHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS ++PD LRFD  H KPI++ EL  +ED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVSPDRLRFDFAHPKPISAEELARVEDIANDVVLENAEVTTRLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----------EDGGVHSSALCGGTHVSSTGEIMLL 708
             +GA AL G KY D VRVVS+              +    S  LCGGTHV  TG+I L+
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGNAARDQASNAQASNAMGWSVELCGGTHVKRTGDIGLI 696

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            + SES++ +G+RRIEA+T + AR+H        K+ A+ L+ +   V  R+  + EE +
Sbjct: 697 AVTSESAVSSGVRRIEALTARGARAHANHNLSLAKAAAAELRTTVDEVPARIAALMEERK 756

Query: 769 KLQLIHAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           KL+   +  + +L +              ++A V  M+  +  V+ K+LKS++D  +K++
Sbjct: 757 KLERELSDARKKLAMGGGAAAGGSASGIREVAGVKLMARAVEGVEMKDLKSLVDEAKKQL 816

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            SG++ +VG +++ KA V++ VT DL  RFNAV+L R +++ LGG GGGGRP MAQ+GGP
Sbjct: 817 GSGVVAIVGRAEDGKAGVVVGVTADLTARFNAVELVRAASEALGGKGGGGRPDMAQAGGP 876

Query: 881 NGNKADQAIAGVASFL 896
           +G+KA+ A+A + S +
Sbjct: 877 DGSKAEAALAAIESAI 892


>gi|73540553|ref|YP_295073.1| alanyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|83305858|sp|Q474F4|SYA_RALEJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|72117966|gb|AAZ60229.1| alanyl-tRNA synthetase [Ralstonia eutropha JMP134]
          Length = 874

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/910 (42%), Positives = 532/910 (58%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLTK + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+  ++I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYAEDDEAYDIWAKEVGVPTERIVRIGDNKGSRYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IFFD G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFFDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + T +     N  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETHID--NLNQNSLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  +MG AYPEL  A+  + E L++
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVADLVAQMGEAYPELADAQGRVTEVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  L+   L   + L+G++AFKL+DT G PLD+ QD+   +   
Sbjct: 359 EEERFFETIENGMSILDAALADLKLKGGKTLDGELAFKLHDTFGFPLDLTQDVCREQ-EI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ L        
Sbjct: 418 AVDEAAFDAAMNRQREQARAAGKFKMAAG-------LEYSGDKTVFHGYEKLELP----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+   G  V+    GQ   +V D TPFYAE+GGQ GD 
Sbjct: 466 -----------------QAKIIALYVDGAAVDAMQPGQTGVIVLDNTPFYAESGGQAGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D  K    +F H   +E G L+   ++   +D   R +   NHSATH
Sbjct: 509 GVLKAGNAVFAVADTTKIQADVFGHQGTLEGGALKVGDTVQPQVDALRRARTVRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD +H+ P+T  +++ +ED VN  I +N     
Sbjct: 569 LMHKALREVLGTHVQQKGSLVDADKTRFDFSHNAPMTDEQIRRVEDIVNAEILRNEDTHA 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV  TG+I L  IV
Sbjct: 629 EIMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  +L   D KL   A+ LK     +V R+ ++ E+ R L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNALHYLQKLDAKLNEAAAALKAQPSELVPRIGQVQEQVRALE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +L              +  +  ++  +   D K L+  MD L+ K+QS  I+
Sbjct: 743 KELERLKSKLASSQGDELAEQAVDVKGLKVLAAQLEGADVKTLRETMDKLKDKLQSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAVA-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPGKLP 860

Query: 887 QAIAGVASFL 896
           QA++GV  ++
Sbjct: 861 QALSGVVEWV 870


>gi|227822193|ref|YP_002826164.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|227341193|gb|ACP25411.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 887

 Score =  938 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/894 (54%), Positives = 650/894 (72%), Gaps = 37/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSMFLDYFRKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 EQIWGGPPGSADEDGDRFIEIWNLVFMQYEQITKEERVNLPRPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLF+ LI ASE+ TG+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L + +  +G+ AFKLYDT+G PLD+ QD L  +G+  +D  +F+
Sbjct: 361 KTLERGLSLLADASAGLSEGDQFDGETAFKLYDTYGFPLDLTQDALRTKGIT-VDTDAFS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA+  G G   TE IWF LKEK+GAT F+GYD                  
Sbjct: 420 TAMQRQKAEARANWAGSGEAATETIWFELKEKHGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++AIV+ G +VE A  G+ V+++ +QTPFY E+GGQ+GDTG    +  
Sbjct: 462 -----TESAEGVIQAIVRDGAVVESASKGESVQLILNQTPFYGESGGQMGDTGVIATETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ +TD QK+ EG+FVH+  V  GI++T  +  LT+D+  R +L  NHSATHLLH AL  
Sbjct: 517 KVAVTDTQKRGEGLFVHYGTVTEGIVKTGEAAALTVDHARRLRLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ EL+ +E+  N++I QN PV TR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELRIVEEMANEVIVQNTPVTTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHVS+TG+I L+ +VSES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGIRGSKAGRPYSVELCGGTHVSATGDIGLVRVVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG+ AR++L  QDE++KSLAS LKV   +V+GRVE + +E RKL+   
Sbjct: 697 AVGAGVRRLEALTGEAARAYLNEQDERVKSLASALKVQPADVLGRVEALLDERRKLEREL 756

Query: 775 AKRKLQLNV-------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + K +L +          +  +I  V F+  ++S V+ K+LKS+ D  +K + SG++  
Sbjct: 757 TEAKKKLALVGDGENGSGDAAREIGGVRFLGKVVSGVEPKDLKSLADDGKKTLGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           VG+S + KAS ++ VT+DL  + +AVDL R+++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPD 870


>gi|116252382|ref|YP_768220.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|205830192|sp|Q1MFZ9|SYA_RHIL3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115257030|emb|CAK08124.1| putative alanyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 884

 Score =  938 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 493/904 (54%), Positives = 639/904 (70%), Gaps = 38/904 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI+T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKNRLLVTVYSEDEEAATLWKKIAGFSDDKIIRISTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI   E   G+K       +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLIGTIEDTMGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLVYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR   G+DI  F 
Sbjct: 359 KTLERGLSLLSDATTDLAKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF LKEK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELKEKHGATEFLGYD------------------ 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV+ G +  EA +G KV++V  QTPFY E+GGQ+GDTG    D  
Sbjct: 460 -----TETAEGVVQAIVKDGAVAAEASAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QK+ EG+FVH   V  G+ +   ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKRGEGLFVHQGTVVDGVFKDGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVV++       + G  +S  LCGGTHV +TG+I L+ ++ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVAMGEGVRGAKAGKPYSIELCGGTHVGATGQIGLIRVLGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR +L  QDE++K+LA+ LKV  G V+ RVE + +E RKL+   
Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDERVKTLAASLKVQPGEVLSRVEALMDERRKLEKEL 754

Query: 775 AKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  K +L +         +  ++A V F+   IS VD K+LK + D  +  I SG++ LV
Sbjct: 755 ADAKRKLAMGGGQGGSVDAVREVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVALV 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S + KAS ++ VT DL+ R++AVDL R+++  LGG GGGGRP MAQ+GGP+G+KAD+A
Sbjct: 815 GVSDDGKASAVVAVTPDLVQRYSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGSKADEA 874

Query: 889 IAGV 892
           I  V
Sbjct: 875 IEAV 878


>gi|254245667|ref|ZP_04938988.1| Alanyl-tRNA synthetase, class IIc [Burkholderia cenocepacia PC184]
 gi|124870443|gb|EAY62159.1| Alanyl-tRNA synthetase, class IIc [Burkholderia cenocepacia PC184]
          Length = 897

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/912 (42%), Positives = 537/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 24  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 83

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 84  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 143

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 144 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 203

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 204 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 263

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 264 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 321

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 322 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 381

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 382 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 441

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 442 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 489

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 490 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 531

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 532 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 591

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 592 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIV 651

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 652 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 705

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 706 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 765

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 766 KELGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 825

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 826 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 883

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 884 GALAGVKGWVEE 895


>gi|170732737|ref|YP_001764684.1| alanyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|205830047|sp|B1K026|SYA_BURCC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169815979|gb|ACA90562.1| alanyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
          Length = 874

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/912 (42%), Positives = 537/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|191171366|ref|ZP_03032915.1| alanyl-tRNA synthetase [Escherichia coli F11]
 gi|190908300|gb|EDV67890.1| alanyl-tRNA synthetase [Escherichia coli F11]
          Length = 876

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    E+L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSERLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDATALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|256822655|ref|YP_003146618.1| alanyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796194|gb|ACV26850.1| alanyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 875

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/912 (42%), Positives = 540/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  GH ++ SS LIP NDPTL+FTN+GMV FK+ F G +K  Y   
Sbjct: 1   MTTNQIRNAFLTFFENKGHHIVDSSPLIPANDPTLLFTNAGMVQFKDCFLGIDKRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+LLT+EF L 
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAYCWELLTEEFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY+ED+EAF +W    G  AD+I RI  N       DNFW+M +TGPCGPCSE
Sbjct: 121 KEKLWVTVYEEDDEAFDIWVNDIGFPADRISRIGDNKGERYASDNFWAMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +F+D GE I GG P    E+G+R+IEIWNLVFMQF +Q       LPK S+DTGMGLER+
Sbjct: 181 VFYDHGEEIWGGPPGTPEEDGDRFIEIWNLVFMQFNRQKDGTMERLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+IDLF+HLI+++  +  +K    +  + RVI DH+RS +FLI DGI+P+
Sbjct: 241 AAILQGVHSNYEIDLFQHLIKSTADLLKVKD--LDNKSLRVIADHIRSCAFLILDGIVPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG AYP L++ K LIE+ L  
Sbjct: 299 NEGRGYVLRRIVRRAVRHGHQLGAKGIFFAKLVQPLIEVMGEAYPALVEQKELIEKVLAK 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E F +TLD+G+++LD  ++ L     + ++GD  FKLYDT+G P D+  DI   +GL 
Sbjct: 359 EEEAFARTLDKGMLILDQDIADLVETNGKTISGDTVFKLYDTYGFPQDLTADIAREKGLE 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+ +QR RARA S           +         ++F GY   + +     
Sbjct: 419 -VDWDGFEKAMNQQRERARAASNFG------TDYNDNFSIDERSEFTGYHYTQQNV---- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                              +V  +++  + V+E   G+K  V+  +TPFYAEAGGQ+GDT
Sbjct: 468 -------------------VVTRLLKGEDEVKELDQGEKGVVILAKTPFYAEAGGQVGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  +    H   V+RG    +  L   +D + R+    NHSATH
Sbjct: 509 GRLFGCGATFIVEDTQKLGD-AIAHIGYVQRGSFSNDAELTAEVDAERRQHTMRNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG+HV+Q GS + P+ LRFD ++ +P+T  +L+ IE  VN  I +N  V  
Sbjct: 568 LLHAALRDILGTHVTQKGSLVGPERLRFDFSNPEPVTQEQLRQIEALVNQKIYENHAVEA 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ ++A   GA AL G KY D VRV+++        S  LCGGTHV  TG+I    I+
Sbjct: 628 ATMSMDEAKEHGAMALFGEKYGDEVRVLTMSP-----FSVELCGGTHVQRTGDIGAFKIL 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AGIRRIEA TG  A + +   +  L+S+   LK     V  +V ++ ++ R+L+
Sbjct: 683 SESGIAAGIRRIEATTGAGAVNWMQSTEASLQSIGKLLKSEPSQVAEKVNQLMDKSRQLE 742

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 + +L     S        +  +  +   +  V++K L+ + D L+ K+ S I++
Sbjct: 743 KTIEALQSKLASSQGSDLASQAEDLNGIKLLVAKLEGVEAKALRDIQDQLKNKLGSSIVV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L GI++E K S+++ V++DL  +  A +L  + A  + GG GGGRP MAQ+GG +     
Sbjct: 803 L-GIAEEDKVSIIVGVSKDLTGKVKAGELVNMVASQV-GGKGGGRPDMAQAGGKDPAALP 860

Query: 887 QAIAGVASFLKK 898
            A+  V  ++ +
Sbjct: 861 AALDSVKPWVAE 872


>gi|172060378|ref|YP_001808030.1| alanyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|205829999|sp|B1YNJ6|SYA_BURA4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|171992895|gb|ACB63814.1| alanyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 874

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/912 (41%), Positives = 536/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVVGHHGTLEQGTLKLGDVLRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQATEVGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|205830048|sp|A0K6N4|SYA_BURCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/912 (41%), Positives = 539/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++A V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|116689431|ref|YP_835054.1| alanyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|116647520|gb|ABK08161.1| alanyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
          Length = 897

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/912 (41%), Positives = 539/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 24  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 83

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 84  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 143

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 144 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 203

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 204 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 263

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 264 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 321

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 322 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 381

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 382 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 441

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 442 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 489

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 490 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 531

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 532 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 591

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 592 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 651

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 652 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 705

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 706 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 765

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++A V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 766 KELGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 825

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 826 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 883

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 884 GALAGVKGWVEE 895


>gi|52424403|ref|YP_087540.1| alanyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|59798509|sp|Q65VQ5|SYA_MANSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52306455|gb|AAU36955.1| AlaS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 875

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/912 (42%), Positives = 551/912 (60%), Gaps = 55/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVESSSLVPHNDPTLLFTNAGMNQFKDVFLGMDKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIAYGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+ AD IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKEVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE I GGLP    E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHIWGGLPGTPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+A VLQ   +NYDID+F+ LI+   Q+TG K       + RVI DH+RS ++LIADG+
Sbjct: 241 ERIAAVLQHVNSNYDIDIFQTLIKKVAQLTGEKD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A   + Q + LIE+T
Sbjct: 299 MPSNEGRGYVLRRIIRRAVRHGHLLGAKETFFYKLVPTLADVMEHAGEIVNQKRALIEKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL+LLD  LS +  D +L+GDVAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLLLLDDALSQVK-DNVLSGDVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR+RA+A S           + ++ +  G T+F GY+    S    
Sbjct: 418 T-IDEKGFEREMQAQRARAQASSNFG------VDYNNVIKVDGQTEFKGYETTSLS---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             S+ V A+   G+ VE   SG+   V+ D+TPFY E+GGQ+GD
Sbjct: 467 ------------------SAKVVALFTDGKSVERVQSGENAVVILDRTPFYGESGGQIGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D    +I D QK    +  H   +E G L    ++   +D + R  ++ NHSAT
Sbjct: 509 TGYIATDLAAFRINDTQKYG-QVTGHIGQLESGSLSVGDTVSAQVDTERRLAVAANHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++   LRFD    + I+  ++  IE  VN  I +N+ V 
Sbjct: 568 HLLHAALRKVLGDHVAQKGSLVSESALRFDFIQPEAISKEQIIEIEAIVNRQIRENISVT 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 628 TEVMDIEAAKQKGAMALFGEKYGDLVRVVGMTG-----FSIELCGGTHVKRTGDIGLFKV 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSES+I AGIRRIEA+T + A + L  Q   L   A  LK    ++V +++++ ++ +K 
Sbjct: 683 VSESAIAAGIRRIEAVTAENAINWLNNQQNILNQSADLLKSDTASLVEKIQQLQDKAKKA 742

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +  ++       S  KI D++ +   +  +++K L+ ++D L+ ++ SG+I
Sbjct: 743 EKELQQLKEKAAMQAGSDLAKSAVKINDISVIVQQLDGIETKSLRVMVDDLKNQLGSGVI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   +  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 803 VFASVV-EDKVNLIVGVTADLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 860

Query: 886 DQAIAGVASFLK 897
             A++  + +L+
Sbjct: 861 GAALSACSDWLE 872


>gi|299131739|ref|ZP_07024934.1| alanyl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298591876|gb|EFI52076.1| alanyl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 888

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/908 (52%), Positives = 617/908 (67%), Gaps = 38/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL FF KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSGFLNFFAKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TK+F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKDRAIELAWTLITKDFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY ED+EAF LWKKI+GL   +I+RI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLVTVYAEDDEAFGLWKKIAGLPESRIVRIGTSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + +PGG P    E+G+R+IEIWNLVFMQF+Q     R  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DKVPGGPPGSPDEDGDRFIEIWNLVFMQFDQIAPGNRNPLPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A   +TG    G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAISDLTGADPHGAQKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  L+ AL  EMG AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKDPLMHRLVWALVREMGQAYPELVRAEALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L  RG  G+D+ SF 
Sbjct: 361 KTLDRGLAILDEKSAALHKGDMFDGETAFTLYDTYGFPLDLTQDALRNRG-IGVDLASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++ARA   G G    EKIWF L+E+ GAT+F+GYD                  
Sbjct: 420 DAMERQKAKARASWAGSGDTAAEKIWFPLREELGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G  VE   +G    VV +QTPFY E+GGQ+GDTG   GDG 
Sbjct: 462 -----TEIAEGVVTALVKDGASVESLKAGDAASVVLNQTPFYGESGGQVGDTGVLTGDGG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R ++TD QKKA  +FVH   +E+G L+    L L +D+  R  +  NHSATHLLH AL 
Sbjct: 517 VRFRVTDTQKKAGDLFVHIGQLEQGTLKKGAPLQLEVDHARRGAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS ++P+ LRFD  H+KPIT  EL  IED  NDI+ +N  V TR+M  ED
Sbjct: 577 QVLGDHIAQRGSLVSPERLRFDFAHTKPITPDELSRIEDIANDIVLENGEVTTRLMGIED 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A +SGA AL G KY D VRVVS+    G     S  LCGGTHV  TG+I L+ I  ES++
Sbjct: 637 ARSSGARALFGEKYGDEVRVVSMGQGSGNALGWSVELCGGTHVRRTGDIGLVSITGESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA+TG+ AR       +  K+ A+ LK +  ++  R+  + EE +KL+   ++
Sbjct: 697 ASGVRRIEALTGRAARQAANHSIQTAKTAAAELKTTLEDMPVRIAALIEERKKLERDLSE 756

Query: 777 RKLQLNVEDLS----------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            + +L +                 + DV  ++  +  V+ K+LKS+ D  +K+I SG++ 
Sbjct: 757 ARKKLAMGGGGSAGGAAAASDVRSVGDVKLLARAVQGVEVKDLKSLADQGKKQIGSGVVA 816

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LV  S++ KASV++ VT DL  RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+KAD
Sbjct: 817 LVATSEDGKASVVVGVTPDLTSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSKAD 876

Query: 887 QAIAGVAS 894
            A+  + +
Sbjct: 877 AALKAIEA 884


>gi|325529341|gb|EGD06275.1| alanyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 874

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 537/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDQRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKDVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT       N  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTETSD--LNNNSLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHQLVADLVAEMGVAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKTGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P++  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPLSDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELSALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 AALAGVKGWVEE 872


>gi|206559783|ref|YP_002230547.1| alanyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|198035824|emb|CAR51715.1| alanyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 874

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/912 (41%), Positives = 538/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTAVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVDAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|86357937|ref|YP_469829.1| alanyl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|86282039|gb|ABC91102.1| alanyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 899

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 490/904 (54%), Positives = 635/904 (70%), Gaps = 38/904 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 16  MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYAT 75

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L
Sbjct: 76  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 135

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 136 PKHRLLVTVYSEDEEAAALWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 195

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 196 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 255

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ L    E   G+K       +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 256 VQSVFDTDLFRTLTGTIEDTIGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 313

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 314 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELARAEALISETLKLEEGRFR 373

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR   G+DI  F 
Sbjct: 374 KTLERGLSLLSDATADLDKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDIAGFT 432

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE IWF L+EK+GAT+F+GYD                  
Sbjct: 433 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYD------------------ 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV+ G +  EA +G KV++V +QTPFY E+GGQ+GD G    D  
Sbjct: 475 -----TEAAEGVVQAIVRDGAVAAEAKAGDKVQIVVNQTPFYGESGGQMGDAGVISSDHG 529

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QK+ EG+FVH   V  G++R   ++ +T+D+  R +L  NHSATHLLH AL  
Sbjct: 530 KIEISDTQKRGEGLFVHLGTVIEGVVRDGDAVAMTVDHARRSRLRANHSATHLLHEALRE 589

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T  ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 590 VLGTHVAQKGSLVAPERLRFDVSHPKPMTPEELKIVEDMANEIVLQNSPVTTRLMSVDDA 649

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       +    +S  LCGGTHVS+TG+I L+ I+ ES
Sbjct: 650 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 709

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E RKL+   
Sbjct: 710 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALIDERRKLEKEL 769

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  K +L +         +  ++A V F+   IS VD K+LK + D  +  I SG++ L+
Sbjct: 770 ADAKRKLAMGGGQGGSGDAVREVAGVKFLGKSISGVDPKDLKGLADEGKTSIGSGVVALI 829

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S++ KAS ++ VT DL++R++AVDL R+++  LGG GGGGRP MAQ+GGP+G+KAD+A
Sbjct: 830 GVSEDGKASAVVAVTPDLVERYSAVDLVRIASVALGGKGGGGRPDMAQAGGPDGSKADEA 889

Query: 889 IAGV 892
           I  V
Sbjct: 890 IEAV 893


>gi|205830239|sp|Q2K7T4|SYA_RHIEC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 884

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 490/904 (54%), Positives = 635/904 (70%), Gaps = 38/904 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYAT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAAALWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ L    E   G+K       +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLTGTIEDTIGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELARAEALISETLKLEEGRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR   G+DI  F 
Sbjct: 359 KTLERGLSLLSDATADLDKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDIAGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE IWF L+EK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYD------------------ 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV+ G +  EA +G KV++V +QTPFY E+GGQ+GD G    D  
Sbjct: 460 -----TEAAEGVVQAIVRDGAVAAEAKAGDKVQIVVNQTPFYGESGGQMGDAGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QK+ EG+FVH   V  G++R   ++ +T+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKRGEGLFVHLGTVIEGVVRDGDAVAMTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T  ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTPEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       +    +S  LCGGTHVS+TG+I L+ I+ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E RKL+   
Sbjct: 695 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALIDERRKLEKEL 754

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  K +L +         +  ++A V F+   IS VD K+LK + D  +  I SG++ L+
Sbjct: 755 ADAKRKLAMGGGQGGSGDAVREVAGVKFLGKSISGVDPKDLKGLADEGKTSIGSGVVALI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S++ KAS ++ VT DL++R++AVDL R+++  LGG GGGGRP MAQ+GGP+G+KAD+A
Sbjct: 815 GVSEDGKASAVVAVTPDLVERYSAVDLVRIASVALGGKGGGGRPDMAQAGGPDGSKADEA 874

Query: 889 IAGV 892
           I  V
Sbjct: 875 IEAV 878


>gi|115351339|ref|YP_773178.1| alanyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|122323447|sp|Q0BG79|SYA_BURCM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115281327|gb|ABI86844.1| alanyl-tRNA synthetase [Burkholderia ambifaria AMMD]
          Length = 874

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 535/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVVGHHGTLEQGTLKIGDVLRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQATEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|300722254|ref|YP_003711538.1| alanyl-tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297628755|emb|CBJ89333.1| alanyl-tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 875

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVPSSSLVPTNDPTLLFTNAGMNQFKDVFLGLDKRPYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT  K F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTSEKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYDIWHKEVGVPTERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHVDGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF+ LI +   VTG         + RV+ DH+R+ +FLI DG++
Sbjct: 243 RITAVLQHVNSNYEIDLFQSLIASVADVTGATD--LTNKSLRVVADHIRACAFLICDGVV 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  EL Q + L+E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIKIMGAAGEELKQQQALVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+E QR RAR       S      +  L +  G++ F GY+          
Sbjct: 420 -VDEAGFEMAMENQRRRARE------SSGFGTDYNELIKVDGSSDFCGYEH--------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   +IV AI + GE VE+  +G++  V+ D+T FYAE+GGQ GD 
Sbjct: 464 --------------NSQQAIVTAIFRNGESVEQIHAGEEAVVILDKTAFYAESGGQAGDM 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +      ++ D QK A  +  H   +  GIL    ++   ID   R  + +NHSATH
Sbjct: 510 GHLLNSDGVFEVLDTQKYA-QVIGHIGKLTSGILAVNHTVNAEIDVVRRDAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HV+Q GS +    LRFD +H + + S +++ +E+ VN+ I +N PVVT
Sbjct: 569 LLHAALRQILGEHVAQKGSLVNDKYLRFDFSHFEAMKSEQIRQVENLVNEEIRKNSPVVT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  EDA + GA AL G KY+++VRV+S+        S+ LCGGTH S TG+I +  I 
Sbjct: 629 ELMALEDAKSKGAMALFGEKYDEKVRVLSMGG-----FSTELCGGTHASRTGDIGVFRIS 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEAITGQ A   +  Q + L+ +A  +K    ++  +V+   +  ++L+
Sbjct: 684 SESGTAAGIRRIEAITGQTALDAIYQQTDLLQDIAHLVKGDISSLNEKVKTTLDRMKQLE 743

Query: 772 LIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ S       +I  V  +   + +V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKSQQAAQESSSLANQTKEIQGVRLLVTQLGDVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L       K S+++ +T+DL  +  A DL    A+ + GG GGGRP +AQ+GG +     
Sbjct: 804 L-STVAGDKVSLIVGITKDLTAKIKAGDLISFVAQQV-GGKGGGRPDLAQAGGTDVTALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 TALASVEEWV 871


>gi|323526792|ref|YP_004228945.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323383794|gb|ADX55885.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 890

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 538/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 17  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 77  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 136

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 137 KEKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 196

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 197 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 256

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 257 AAVLQHVHSNYEIDLFQALIKAAARETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 314

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  +MGSAYPEL  A+  + + LR 
Sbjct: 315 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVEQMGSAYPELKDAQQRVTDVLRQ 374

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L K   + L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 375 EEERFFETIEHGMSILENALAELEKKGRKTLDGELAFKLHDTYGFPLDLTADVCREREVT 434

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 435 -VDEAAFDEAMARQREQARAAGKFKMAQG-------LEYSGAKTTFHGYEEIVFDD---- 482

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V+E   GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 483 ------------------AKVVALYVDGASVQEVAQGQQAVVVLDHTPFYAESGGQVGDQ 524

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  + D  K    +  HH  +E+GIL+    +   ID   R + + NHSATH
Sbjct: 525 GLLANASVRFAVADTLKVQADVVGHHGTLEQGILKVGDVVKAEIDAVRRARTARNHSATH 584

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS + PD  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 585 LMHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 644

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 645 RVMPFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 698

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + AS LK     +  R+ ++ ++ ++L+
Sbjct: 699 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAASVLKAQPSELTQRITQVQDQVKQLE 758

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++A V  ++  +   D K L+  +D L+ K++S  I+
Sbjct: 759 KELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRKTVDKLKDKLKSAAIV 818

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 819 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 876

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 877 AALAGVKGWVE 887


>gi|78066024|ref|YP_368793.1| alanyl-tRNA synthetase [Burkholderia sp. 383]
 gi|77966769|gb|ABB08149.1| alanyl-tRNA synthetase [Burkholderia sp. 383]
          Length = 897

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 535/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 24  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 83

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 84  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 143

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 144 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 203

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 204 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 263

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 264 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 321

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 322 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQ 381

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+G L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 382 EEERFFETIEHGMSILEGALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 441

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 442 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 489

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 490 ------------------AKIVALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQ 531

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 532 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATH 591

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 592 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 651

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS +G+I    IV
Sbjct: 652 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRSGDIGFFKIV 705

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 706 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 765

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 766 KELGALKSKLASSQGDELAQQAVEIGGVFVLAATLDGADAKTLRETVDKLKDKLKSAAIV 825

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 826 LAAVES-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 883

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 884 GALAGVKGWVEE 895


>gi|218701187|ref|YP_002408816.1| alanyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218371173|emb|CAR19004.1| alanyl-tRNA synthetase [Escherichia coli IAI39]
          Length = 876

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/910 (43%), Positives = 561/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLATGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ + S E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKSEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAVLP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|307730458|ref|YP_003907682.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307584993|gb|ADN58391.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 890

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 538/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 17  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 77  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 136

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 137 KEKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 196

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 197 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 256

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 257 AAVLQHVHSNYEIDLFQALIKAAARETGVSDLANN--SLKVIADHIRACSFLIVDGVIPG 314

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  +MGSAYPEL  A+  + + LR 
Sbjct: 315 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVEQMGSAYPELKDAQARVTDVLRQ 374

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L K     L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 375 EEERFFETIEHGMSILENALAELEKKGARTLDGELAFKLHDTYGFPLDLTADVCREREVT 434

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA      S         L+     T F GY+ +        
Sbjct: 435 -VDEAAFDEAMARQREQARAAGKFKMSQG-------LEYSGAKTTFHGYEEIVFDD---- 482

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V+E   GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 483 ------------------AKVVALYVDGASVQEVAHGQQTVVVLDHTPFYAESGGQVGDQ 524

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  +TD  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 525 GLLANASVRFAVTDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 584

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS + PD  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 585 LMHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 644

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 645 RVMPFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 698

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ ++L+
Sbjct: 699 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKQLE 758

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++A V  ++  +   D K L+  +D L+ K++S  I+
Sbjct: 759 KELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIV 818

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 819 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLG 876

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 877 AALAGVKGWVE 887


>gi|241204888|ref|YP_002975984.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858778|gb|ACS56445.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 884

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 497/904 (54%), Positives = 641/904 (70%), Gaps = 38/904 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKNRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ    ER  LP+ SIDTGMGLERMA VLQ 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTAPGERSPLPRPSIDTGMGLERMAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI   E   G+K       +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLIGTIEDTMGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLVYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    ++L K ++L+G+ AFKLYDT+G PLD+ QD L AR   G+DI  F 
Sbjct: 359 KTLERGLSLLSDATTNLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE IWF LKEK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELKEKHGATEFLGYD------------------ 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV++G +   A +G KV++V  QTPFY E+GGQ+GDTG    D  
Sbjct: 460 -----TETAEGVVQAIVKEGAVSTAAKAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QK+ EG+FVH   V  G+ +   ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKRGEGLFVHQGTVIDGVFKDGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVV++       + G  +S  LCGGTHV +TG+I L+ ++ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVAMGEGVRGAKAGKAYSIELCGGTHVGATGQIGLIRVLGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR +L  QDE++K+LA+ LKV  G V+ RVE + +E RKL+   
Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDERVKTLAASLKVQPGEVLSRVEALMDERRKLEKEL 754

Query: 775 --AKRKLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +         +  ++A V F+   IS VD K+LK + D  +  I SG++ LV
Sbjct: 755 GDAKRKLAMGGGQGGSVDAVREVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVALV 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S + KAS ++ VT DL+ R++AVDL R+++  LGG GGGGRP MAQ+GGP+G+KAD+A
Sbjct: 815 GVSDDGKASAVVAVTPDLVQRYSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGSKADEA 874

Query: 889 IAGV 892
           I  V
Sbjct: 875 IEAV 878


>gi|219870706|ref|YP_002475081.1| alanyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|219690910|gb|ACL32133.1| alanyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 875

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/912 (41%), Positives = 553/912 (60%), Gaps = 55/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  FLEFFQ  GH ++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTSEIRQAFLEFFQSKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLDKRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPDAIAFAWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W +  G+ A+ I+RI  N       DNFW M +TGPCGP
Sbjct: 121 ALPKEKLWVTVYETDDEAYDIWNREIGVPAEHIVRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS+ E+G+R+IE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSAEEDGDRFIEVWNVVFMQFNRQADGTLKKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI+    +  +     +  + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQALIKEIASLLNVTD--LDNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  +LG        L+P L   MG A   L Q +  I++ 
Sbjct: 299 MPSNEGRGYVLRRIIRRAVRHGNILGAKSAFFYQLVPTLAKAMGQAGEILTQKQAHIQKA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+++F +TL+RGL LL+  L+ +  +++L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEDQFARTLERGLALLEDALTKVE-NKVLSGEVAFKLYDTYGFPLDLTADVCRERSI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR+RA+A S           +  + +  G+T+F GY++        
Sbjct: 418 T-IDEAGFEREMQAQRARAQASSNFG------TDYNYVIKVDGSTEFKGYEVTE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ VE   SG+   VV D+T FY E+GGQ+GD
Sbjct: 465 -----------------CEATVVALFSNGKAVEAIQSGENAVVVLDRTAFYGESGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +    ++ D QK    +F H   +  G L     +   ++   R  +++NHSAT
Sbjct: 508 SGVIASEICNFEVNDTQKYG-QVFGHIGQLASGTLSVGDKVKAEVNATRRHAITLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ A+L+ IE  +N  I +N+ V 
Sbjct: 567 HLLHSALRQVLGDHVAQKGSLVSENSLRFDFSQGEAISKADLEEIERIINTKIRENIVVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M+ E A   GA AL G KY DRVRVV +        S  LCGGTHV  TGEI L  +
Sbjct: 627 TEVMDLESAKQKGAMALFGEKYGDRVRVVDMT----AAFSVELCGGTHVKQTGEIGLFKV 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AG+RRIEA+TG+ A   L  Q + L   A  LK    ++V +++++ E+ +K+
Sbjct: 683 VSEGAVAAGVRRIEAVTGENAIGLLHQQQQILNQSAELLKADTASLVEKIQQLQEKSKKV 742

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +          +I  VN +   +  VD+K L++++D L+ ++ S +I
Sbjct: 743 EKELQQLKDKLAAQAGGELAKQAQQINGVNVVVQRLENVDAKALRTMVDDLKNQLGSAVI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +      ++K ++++ VT+DL D+ NA +L  L A+ + GG GGGR  MA +GG      
Sbjct: 803 V-FATQTDEKVNLIVGVTKDLTDKVNAGELVGLMAQEV-GGKGGGRADMAMAGGSQPENI 860

Query: 886 DQAIAGVASFLK 897
            QA+    ++++
Sbjct: 861 TQALNVATNWIQ 872


>gi|170695494|ref|ZP_02886639.1| alanyl-tRNA synthetase [Burkholderia graminis C4D1M]
 gi|170139685|gb|EDT07868.1| alanyl-tRNA synthetase [Burkholderia graminis C4D1M]
          Length = 890

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/911 (41%), Positives = 532/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 17  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 77  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 136

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 137 KDKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 196

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG P    E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 197 IFYDHGPDVWGGPPGSPDEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 256

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 257 AAVLQHVHSNYEIDLFQALINAAARETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 314

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  +MG AYPEL  A+  + + LR 
Sbjct: 315 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGGAYPELKDAEQRVTDVLRQ 374

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  L+ L K   + L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 375 EEERFFETIEHGMSILDNALAELDKKGGKTLDGELAFKLHDTYGFPLDLTADVCREREVT 434

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 435 -VDEAAFDEAMARQREQARAAGKFKMAQG-------LEYSGAKTTFHGYEEIVFDD---- 482

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V++   GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 483 ------------------AKVVALYVDGASVQQVTHGQQAVVVLDHTPFYAESGGQVGDQ 524

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 525 GLLANASVRFAVADTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 584

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS + PD  RFD  H+ P+T  +++ +E  VN  +  N P + 
Sbjct: 585 LMHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEQIVNAEVLANAPGIV 644

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 645 RVMPFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 698

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ ++L+
Sbjct: 699 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKQLE 758

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++A V  ++  +   D K L+  +D L+ K++S  I+
Sbjct: 759 KELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIV 818

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 819 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 876

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 877 AALAGVKGWVE 887


>gi|312795632|ref|YP_004028554.1| Alanyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312167407|emb|CBW74410.1| Alanyl-tRNA synthetase (EC 6.1.1.7) [Burkholderia rhizoxinica HKI
           454]
          Length = 893

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/911 (42%), Positives = 536/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +   Y   
Sbjct: 20  MKAAEIREKFLRFFESKGHTIVRSSSLVPANDPTLLFTNSGMVQFKDVFLGADTRPYSRA 79

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ + L 
Sbjct: 80  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTRVYQLP 139

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L +TVY ED+EA+ +W    G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 140 PEKLTVTVYHEDDEAYDIWANEIGVPLERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 199

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  EEG+R+IEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 200 IFYDHGPQVWGGPPGSADEEGDRFIEIWNLVFMQFNRDAQGNLTPLPKQCVDTGMGLERL 259

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI A+ + TG+    +N  + +VI DH+R+  FLI DG++P 
Sbjct: 260 AAVLQHVHSNYEIDLFQRLIAAAARETGVLDLAHN--SLKVIADHIRACGFLIVDGVIPG 317

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL  A+  + + LR 
Sbjct: 318 NEGRGYVLRRIVRRAIRHGYKLGRKSPFFHRLVEDLVGEMGAAYPELKVAQQRVTDVLRQ 377

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  LS L     ++L+G++AFKL+DT+G PLD+  D+   RG  
Sbjct: 378 EEERFFETIEHGMSILDAALSELTARGAKVLDGELAFKLHDTYGFPLDLTADVCRERG-I 436

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           G+D ++F++A+  QR +ARA        T +            T F GYD          
Sbjct: 437 GVDEVAFDEAMARQREQARAAGKFRMVQTLD-------YTGSKTTFHGYDKHVFDD---- 485

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V    +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 486 ------------------AKVVAVYVDGTAVPSLRAGQQGVVVLDQTPFYAESGGQVGDQ 527

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  + D  K    +  HH  +E+G L+    +   +D + R + + NHSATH
Sbjct: 528 GTIGNATVRFAVFDTLKVQADVVGHHGTLEQGELKVGDVVSARVDAERRARTARNHSATH 587

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS + PD  RFD +H  P++  E++ +E  VN  +  N P + 
Sbjct: 588 LMHKALREVLGPHVQQKGSLVDPDKTRFDFSHHAPLSDDEIRRVEAIVNAEVLANTPGLA 647

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+ SGA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 648 RVMPFDDAVKSGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVQRTGDIGLFKIV 701

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   +  L   A+ LKV    +  R+ ++ +++R L+
Sbjct: 702 FEGGVAAGIRRVEAITGDNAVRYVQDLESTLAGAAAALKVQPAELAPRIAQVQDQFRALE 761

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A+ K ++              +A V+ ++  +   D K L+  +D L+ K++   I+
Sbjct: 762 KELAQLKSKIASSQGDELVSQAVDVAGVHVLAAQLEGADVKTLRETVDKLKDKLKHAAIV 821

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG + +K  
Sbjct: 822 LASVD-GGKVSLIAGVTTDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPSKLP 879

Query: 887 QAIAGVASFLK 897
            A++GV  +++
Sbjct: 880 AALSGVKEWIQ 890


>gi|308187884|ref|YP_003932015.1| Alanyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308058394|gb|ADO10566.1| Alanyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 875

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/911 (43%), Positives = 554/911 (60%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GHE++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHEVVTSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTSEQWFS 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYNIWADEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ LIQA  QVTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RISAVLQHVNSNYEIDLFQKLIQAVAQVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLVEVMGAAGEELQRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE+++F +TL+RGL LLD  L  L   + L+G++ F+LYDT G P D+  D+   R L 
Sbjct: 361 KSEEDQFARTLERGLALLDEELEKLQ-GDTLDGEIVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+E+QR RAR              + ++     A+ F GYD L        
Sbjct: 420 -IDEAGFEQAMEQQRQRAREA------SGFGADYSNVIRIDAASSFKGYDQLD------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ VKA+   GE V+E  +GQ   VV D+TPFY E+GGQ+GDT
Sbjct: 466 ----------------LAATVKALYVAGEAVDEVTAGQDAVVVLDETPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  +    H   +  G LR    L   +D   R ++ +NHSATH
Sbjct: 510 GLLKGKNAEFSVQDTQKYGQ-AIGHVGKLTAGQLRIGDRLEAQVDAARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NLPV T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPHEIRQVEDIVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A + GA AL G KY+ RVRV+++     G  S  LCGGTH + TG+I L  I 
Sbjct: 629 EVMDLEAAKSKGAMALFGEKYDQRVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEAITG+ A + +  Q  +L+ LA  +K +  N+  +V  + +  R L+
Sbjct: 684 AESGTAAGIRRIEAITGEGALAQVNAQSSQLQDLAQLVKANSSNLNEKVRGLVDYVRALE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++ +        +  V  +   ++ V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLRDQQAAQESASLSSNAIDVKGVKLLVSELNNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-EGKVSLIAGVTKDLTDRVKAGELIAGLAQQV-GGKGGGRPDMAQAGGTDADALK 861

Query: 887 QAIAGVASFLK 897
            A+AGV S++ 
Sbjct: 862 GALAGVESWVN 872


>gi|304399190|ref|ZP_07381057.1| alanyl-tRNA synthetase [Pantoea sp. aB]
 gi|304353244|gb|EFM17624.1| alanyl-tRNA synthetase [Pantoea sp. aB]
          Length = 875

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/911 (43%), Positives = 552/911 (60%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GHE++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHEVVTSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTSEQWFS 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAFDIWANEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ LIQA  QVTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RISAVLQHVNSNYEIDLFQKLIQAVAQVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIEVMGAAGEELQRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE+++F +TL+RGL LLD  L  L   + L+G++ F+LYDT G P D+  D+   R L 
Sbjct: 361 KSEEDQFARTLERGLALLDEELEKLQ-GDTLDGEIVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+E+QR RAR              + ++     A+ F GYD L        
Sbjct: 420 -IDEAGFEQAMEQQRQRAREA------SGFGADYSNVIRIDAASSFKGYDQLD------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ VKA+   GE V+E  +GQ   VV D+TPFY E+GGQ+GDT
Sbjct: 466 ----------------LAATVKALYVAGEAVDEVTAGQDAVVVLDETPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  +    H   +  G LR    L   +D   R ++ +NHSATH
Sbjct: 510 GLLKGKNAEFSVQDTQKYGQ-AIGHVGKLTAGQLRIGDRLEAQVDAARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NLPV T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ + A + GA AL G KY+ RVRV+++     G  S  LCGGTH + TG+I L  I 
Sbjct: 629 EVMDLDAAKSKGAMALFGEKYDQRVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEAITG+ A + +  Q  +L+ LA  +K +  N+  +V  + +  R L+
Sbjct: 684 AESGTAAGIRRIEAITGEGALAQVNAQSSQLQDLAQLVKANSSNLNEKVRGLVDHVRALE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++ +        +  V  +   ++ V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLRDQQAAQESASLSSNAIDVKGVKLLVSELNNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  VT+DL  R  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVTKDLTGRVKAGELIAGLAQQV-GGKGGGRPDMAQAGGTDAKGLK 861

Query: 887 QAIAGVASFLK 897
            A+AGV S++ 
Sbjct: 862 GALAGVESWVN 872


>gi|189426203|ref|YP_001953380.1| alanyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|189422462|gb|ACD96860.1| alanyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 876

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/905 (42%), Positives = 539/905 (59%), Gaps = 42/905 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F+  GH ++ SS LIP NDPTLMFTN+GM  FK+ F G E   Y   
Sbjct: 1   MTGNEIRARFLKYFEDRGHVVVSSSGLIPQNDPTLMFTNAGMNQFKDCFLGMEDRGYYRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK+  LD
Sbjct: 61  ASSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY+TVY +D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 TSRLYVTVYTDDDEAADIWHQQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P      + +RY+EIWN VFMQF +        LPK ++DTGMGLER+ TV+Q 
Sbjct: 181 EVGCGSPDCAVGCDCDRYMEIWNNVFMQFNRTADGVLHPLPKPAVDTGMGLERITTVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NYD DL + +I+  E+ +G KY     + V+ RVI DH R+ +FLI DG LP+NEGR
Sbjct: 241 VRSNYDTDLLQGIIRHIERHSGKKYGDNEKDSVSMRVIADHCRAVTFLICDGALPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG  EPL+  ++ A+   MG AYPEL + +  I + + +E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGVAEPLLCRMVDAVREMMGDAYPELAERETYIRKVVLAEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+  ++ L      ++ G+  FKLYDT G P+D+ +DI+ A G + +D 
Sbjct: 361 FNETLDRGLAILNEEVASLRAGGCSVIPGETLFKLYDTFGFPVDLTEDIVRAEGFS-VDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E QR   R H  G G+     ++  L      T F+GY  L            
Sbjct: 420 PGFEACMEHQRELGREHWKGSGAAGIADVYKELHNHGLRTNFVGYGSL------------ 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V A+++ G+ V+ A +G K++++ D +PFY E+GGQ GDTGC  
Sbjct: 468 -----------TAFSPVTALLRDGKKVQSATAGDKIDLICDTSPFYGESGGQAGDTGCIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               RL++    +    + VHHA+V+ G ++T  ++ LT+    RR  + NHSATHLL  
Sbjct: 517 SGSARLEVLATSRPFTDLVVHHALVKEGAIKTGDAVNLTVAIDKRRATARNHSATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H+ Q GS + P+ LRFD TH   +T  EL+ +ED VN  I  N  +  R M 
Sbjct: 577 ALRQVLGEHIKQAGSLVEPNRLRFDFTHFTGVTPEELQQVEDLVNGWIMDNAELNIREMG 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A+ SGA AL   KY   VRVV +     G  S+ LCGGTHV + G+I L  I+SE  
Sbjct: 637 MQEAVESGATALFDEKYGSTVRVVRI-----GEVSAELCGGTHVRAAGDIGLFKILSEGG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIE  TG  A S +   + + +++A  LK     +V RVE++ E  R+LQ    
Sbjct: 692 IAAGVRRIEGATGFNALSFVRRLEGERQTVAELLKADSSKLVDRVEKLVERQRELQREVE 751

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN            +   V  ++  +  VD K L+ + D L+ K+ SG+++L G 
Sbjct: 752 SLQGKLNTAQSGDLLSQVQEAGGVKLLAVQVQVVDIKALRDMADQLRDKLGSGVVVL-GA 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + KA++L+ VT+DL  RF A +L    A ++ GG GGG+P +AQ+GG    K  +A+A
Sbjct: 811 ELDGKANLLVTVTKDLTGRFKAGELVGTLAPII-GGRGGGKPELAQAGGSQPEKLPEALA 869

Query: 891 GVASF 895
            V++ 
Sbjct: 870 AVSAL 874


>gi|332173020|gb|AEE22274.1| alanyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 865

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/903 (42%), Positives = 561/903 (62%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL FF   GH+ + SSSL+P +DPTL+FTN+GM  FK++F G E+  Y   
Sbjct: 3   KSTAQIRQAFLNFFADKGHQKVSSSSLVPSDDPTLLFTNAGMNQFKDVFLGTEQRKYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI  AW  LT+E  L 
Sbjct: 63  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIAYAWTFLTQELKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L +T+Y ED+EAF +W    G+  +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 123 KEKLLVTIYSEDDEAFDIWHNEIGVPKEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 182

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG P    E+G+R+IEIWNLVFMQF +Q   +   LPK SIDTGMGLER++ +LQ  
Sbjct: 183 HIWGGPPGTPEEDGDRFIEIWNLVFMQFNRQANGDMLPLPKPSIDTGMGLERISAILQNV 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID+F++LI+A+ ++ G         + RV+ DH+RS SFLI+DG++P+NEGRGYV
Sbjct: 243 HSNYEIDIFQNLIKATAEIVGTS--SLEDKSLRVVADHIRSCSFLISDGVMPSNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL TEMG AYPEL + + +IE+ LR E+E+F +
Sbjct: 301 LRRIIRRAVRHGNKLGAKGVFFYKLVAALATEMGDAYPELNEQRAVIEKVLRVEEEQFSR 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG+++L+  LS L   +++ G++ FKLYDT+G P D+  D+   +GL+ ID   F Q
Sbjct: 361 TLERGMLILNDALSELE-GKVVPGELVFKLYDTYGFPADLTNDVAREKGLS-IDEEGFEQ 418

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+ EQR RA+           +  +         + F+GY+L                  
Sbjct: 419 AMAEQRKRAQKA------SNFDLDYNEQLRSDLESVFVGYEL------------------ 454

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   ++ +K I  QG+ V E  +G +  ++ D++PFYAEAGGQ GDTG  + D   
Sbjct: 455 -----EQNTAQIKEIFVQGQSVAEIAAGMEGTIILDESPFYAEAGGQAGDTGTLVKDSGG 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D  K  + I   H       L+   S+   ++   R  + +NHSATHL+H AL ++
Sbjct: 510 FEVQDTVKLGKAI--AHKGAALSELKVGDSVQANVNGARRHAIKLNHSATHLMHAALKSV 567

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P+ LRFD +H + +T  ++ ++E  VN+ I  N  + T++M  E A 
Sbjct: 568 LGEHVNQKGSLVQPERLRFDFSHYEAMTKEQVLAVETMVNEQILANHALQTKLMGLEQAK 627

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY+D VRVVS+     G  S  LCGGTHV+ TG+I L  I+SES I +G+
Sbjct: 628 EAGAMALFGEKYDDDVRVVSM-----GDFSMELCGGTHVARTGDIGLFKIISESGIASGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A  ++  Q  +L S+++ LK     V  RV ++ E+ + L+    K K +
Sbjct: 683 RRIEAVTGITALQYVQQQAFELTSISAVLKTDVTTVGERVLQLIEQTKTLEKEVTKLKQE 742

Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +     S      ++I  V  +S+ +  ++S  L++++D L+ +I SG+I+L G++  +K
Sbjct: 743 IANSAGSDLLSQINEINGVKVLSYHVQGIESGALRTMIDDLKNQIGSGVILL-GVATGEK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG      D AIA V  +
Sbjct: 802 VSLIAGVTKDLTQKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGSQPENLDSAIASVNEW 860

Query: 896 LKK 898
           L++
Sbjct: 861 LQE 863


>gi|170701933|ref|ZP_02892858.1| alanyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|170133166|gb|EDT01569.1| alanyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
          Length = 874

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/912 (41%), Positives = 534/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGGAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R +   NHSATH
Sbjct: 509 GLLANASTRFAVADTLKVQADVVGHHGTLEQGTLKIGDVMRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQDLDARMNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQATEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|269101880|ref|ZP_06154577.1| alanyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161778|gb|EEZ40274.1| alanyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 873

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/910 (42%), Positives = 548/910 (60%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y   
Sbjct: 3   MSTDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDVFLGLEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT   +L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIKYAWEFLTTVLELP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RL +T+Y+ D+EAF++W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 EDRLLVTIYESDDEAFEIWNKEVGIPADRIVRIGDNKGAPFASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IFFD G+ I GG P    E+G+R+IEIWN VFMQ+ +Q       LPK S+DTGMG+ER+
Sbjct: 183 IFFDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQYNRQADGTMEPLPKPSVDTGMGIERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+FK LI+ +  + G  Y+  +  + RV+ DH+RS ++LIADG++P+
Sbjct: 243 AAIMQGVHSNYEIDIFKTLIKDAADIIG--YDDLSNQSLRVVADHIRSCAYLIADGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGTAGSELKKQQEMVEKVLKI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRGL +L+  L +L    IL+G+  FKLYDT+G P D+  D+   RG   I
Sbjct: 361 EEENFGRTLDRGLTILNEALDNLD-GSILDGETVFKLYDTYGFPADLTNDVARERGFT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+EEQR RAR       +G     + ++ +    T+F GY+   G        
Sbjct: 419 DEEGFEAAMEEQRQRAR------DAGQFGVDYNNVIKVDADTEFKGYEATDG-------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                            ++ AI + GE V+   +G++  +V DQTPFYAE+GGQ GDTG 
Sbjct: 465 ---------------EGVIVAIYRDGEEVDALAAGEEAIIVLDQTPFYAESGGQCGDTG- 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           A+            +K      H   +  G L+    L  T+D+  R  +S+NHSATHL+
Sbjct: 509 ALAAAGVAFTVADTQKFGHAIGHKGTLTEGALKVGDKLAATVDHVRRGAISLNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS + PD LRFD +H + +   +L+ +E  VND I  N  + T I
Sbjct: 569 HAALRKLLGEHVAQKGSLVKPDSLRFDFSHLEAVKPEQLREVERMVNDQIRLNHAIDTEI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D+VRV+S+     G  S+ LCGG H   TG+I L  IVSE
Sbjct: 629 MDIEAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHAKRTGDIGLFKIVSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG  A   L  QDE+L   A  +K    +VV +VE +    ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGAAAIEALHAQDEQLAKAARLVKSDTASVVNKVEALVSHSKQLEKE 743

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K +L  ++ +       +I  V  +   +   D+K L+ ++D L+ ++ SGI++L 
Sbjct: 744 IQQLKDKLAAQEGAGLINQAQEINGVKVLIAKLDGADNKALRGMVDELKNQLSSGIVVLG 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S + K  ++  VT+DL+ +  A +L  + A+ + GG GGGRP MAQ+GG + +    A
Sbjct: 804 NVS-DDKVGLIAGVTKDLIGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDASALPAA 861

Query: 889 IAGVASFLKK 898
           +    +++++
Sbjct: 862 LESAKAWIEE 871


>gi|257465412|ref|ZP_05629783.1| alanyl-tRNA synthetase [Actinobacillus minor 202]
 gi|257451072|gb|EEV25115.1| alanyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 874

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/912 (41%), Positives = 542/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FFQ  GH ++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFQSKGHTVVESSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+ AD IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKIVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+   GGLP    E+G+R+IE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDKYWGGLPGTPEEDGDRFIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ID+F+ LI+   ++  +K    +  + RVI DH+RS S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYEIDIFQTLIKTIAELLNVKD--LDNKSLRVIADHIRSCSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +  +LG  E     L+P L   MG A   + Q +  I++T
Sbjct: 299 APSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLAQVMGHAGEIVAQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+GDVAFKLYDT+G PLD+  D+   R  
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGDVAFKLYDTYGFPLDLTADVCRERN- 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   ++ QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 417 IVIDEAGFEAEMQAQRERAKASSNFG------VDYNNVIKVDGKTDFIGYDNL------- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V  +   G  V+   SG+   ++ D+TPFYAE GGQ+GD
Sbjct: 464 ----------------TAEATVVGLFSNGNAVDVVKSGENAIIILDKTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +  +  + D QK    +F H   +E G L+    +   +  + R  + +NHSAT
Sbjct: 508 SGRISTEFCQFHVVDTQKYG-QVFGHIGQIEAGELKVGDKVTAEVAAERRHSIQLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG+HV Q GS +  +GLRFD +  + IT  +L++IE  VN  I +N+ VV
Sbjct: 567 HLLHSALREVLGTHVMQKGSLVNENGLRFDFSQPEAITKEQLEAIERIVNAKIRENIEVV 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M  E+A A GA AL G KY D VRVV +      V S  LCGGTHV  TG+I L  I
Sbjct: 627 IEEMGIEEAKAKGAMALFGEKYGDVVRVVDM-----SVFSIELCGGTHVKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE ++ AG+RR+EAITG+ A + L    +  +  A  LK    N+V +++++ ++ ++L
Sbjct: 682 TSEGAVAAGVRRVEAITGEAALAWLHNLQQMTQHSAELLKADSTNLVEKIQQLQDKAKRL 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +   +          +I  VN +   +   + K L++++D L+ ++ S I+
Sbjct: 742 EKELQQLKEKQASQAGADLAKQAKQINGVNVVVTQLENTEPKVLRTMVDDLKNQLGSAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   + K ++++ V+ DL  +  A +L    A  + GG GGGRP MA +GG      
Sbjct: 802 VL-GTVADDKVNLIVGVSSDLTTQIKAGELVGEMATYV-GGKGGGRPDMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
            +A+     +++
Sbjct: 860 AKALNFAQEWIQ 871


>gi|197284276|ref|YP_002150148.1| alanyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227357820|ref|ZP_03842168.1| alanyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|194681763|emb|CAR40964.1| alanyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227161930|gb|EEI46948.1| alanyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 875

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/911 (42%), Positives = 543/911 (59%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +   Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDNRPYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGKEWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY  D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYATDDEAYDIWNKEVGVPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG P    E+G+RYIEIWN+VFMQF +++      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGTPEEDGDRYIEIWNIVFMQFNRKSDGTMDPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NYDIDLF+ LI++  +VT      N   + RVI DH+RS SFL+ DG++
Sbjct: 243 RITAVLQHVNSNYDIDLFRALIKSVAEVTNATDLANK--SLRVIADHIRSCSFLVCDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   M  A  EL   + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIDVMAEAGKELKNQQEIVEKVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L  L   + L G+ AF+LYDT+G PLD+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDEELEKLT-GDTLAGETAFRLYDTYGFPLDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      +  L +    + F GYD          
Sbjct: 420 -VDEEGFELAMEEQRKRARE------SSGFGTDYNELIKVDSRSDFSGYDH--------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N     + AI   G+ V E  +G++  +  D+T FYAE+GGQ+GD 
Sbjct: 464 --------------NEQQGTINAIFHNGQTVTELKAGEEGIIFLDKTAFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  IG   + ++TD QK  +    H   V  G       +   ID   R  + +NHSATH
Sbjct: 510 GLLIGKDSQFEVTDTQKYGK-AIGHIGKVISGSFIVNHKINAVIDVARRDAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +    LRFD +H + +   +L+ IED VN  I  N PVVT
Sbjct: 569 LLHAALRQVLGTHVTQKGSLVNDKYLRFDFSHFEAVKPEQLREIEDIVNAQIRLNSPVVT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ EDA   GA AL G KY +RVRV+++     G  S+ LCGGTH + TG+I L  I+
Sbjct: 629 ELMDLEDAKQKGAMALFGEKYEERVRVLTM-----GDFSTELCGGTHAARTGDIGLFRIM 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEAITG  A   +  Q + +  +A  LK    N+V +++ + E+YR L+
Sbjct: 684 SESGTAAGIRRIEAITGATAIESVHEQSDLISLVAHALKSDGSNLVEKIKTVQEKYRSLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ S        +  +  +   ++ V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKDQQAAQESSSLGSQAKNVKGIKLLVRELNNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 L-STISDGKVSLIVGVTKDLTAKIKAGELISFVAQQI-GGKGGGRPDMAQAGGTDVEALP 861

Query: 887 QAIAGVASFLK 897
            A+A V  +++
Sbjct: 862 AALASVDEWVE 872


>gi|205830049|sp|Q39HB7|SYA_BURS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 535/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+G L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEGALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKIVALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS +G+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRSGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEIGGVFVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAVES-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|167570231|ref|ZP_02363105.1| alanyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 874

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/912 (41%), Positives = 531/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A +IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAGRIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARETGIGDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A   + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGEAYPELKEAGQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L  L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALGDLESKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +   +            T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQGLD-------YSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYIDGSSVNEVKAGQSAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAVTRFAVADTLKVQADVIGHHGELEQGALKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL   KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFDEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L         L   ++  V+ ++  +   D+K L+  +D L+ K+++  I+
Sbjct: 743 KELAALKSKLASSQGDELALQAIEVGGVHVLAATLDGADAKTLRETVDKLKDKLKNAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAVD-GGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 AALAGVKGWVEE 872


>gi|205830050|sp|Q1BX19|SYA_BURCA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/912 (41%), Positives = 538/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHH FFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHAFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++A V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|107022482|ref|YP_620809.1| alanyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|105892671|gb|ABF75836.1| alanyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
          Length = 897

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/912 (41%), Positives = 538/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 24  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 83

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHH FFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 84  TTAQRSVRAGGKHNDLENVGYTARHHAFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 143

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 144 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 203

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 204 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 263

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 264 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 321

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 322 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 381

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 382 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 441

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 442 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 489

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 490 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 531

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 532 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 591

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 592 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 651

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 652 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 705

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 706 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 765

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++A V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 766 KELGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 825

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 826 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 883

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 884 GALAGVKGWVEE 895


>gi|171321470|ref|ZP_02910415.1| alanyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171093253|gb|EDT38456.1| alanyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 874

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/911 (41%), Positives = 534/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVVGHHGTLEQGTLKIGDVLRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRFVQDLDARMNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQATEVGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 GALAGVKGWVE 871


>gi|183596274|ref|ZP_02958302.1| hypothetical protein PROSTU_00005 [Providencia stuartii ATCC 25827]
 gi|188023874|gb|EDU61914.1| hypothetical protein PROSTU_00005 [Providencia stuartii ATCC 25827]
          Length = 876

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 556/910 (61%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGKEWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W K  G+  D+IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYDIWHKEVGIPVDRIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDID+F+ LI A+ + TG      +  + RVI DH+RS +FL++DG++
Sbjct: 243 RIAAVLQHVNSNYDIDIFQELIAAAAKATGSND--LSNKSLRVIADHIRSCAFLVSDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   MG+A  EL + +  +E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLINVMGAAADELARQQSTVEKVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+  F+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDEELAALK-GDTLDGETVFRLYDTYGFPMDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E+QR RAR       S      + SL +    ++F GY           
Sbjct: 420 -VDEEGFERAMEDQRRRARE------SSGFGTDYNSLIKVEKHSEFSGY----------- 461

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   + + AI + G+ V+   +G++  V+ D+T FYAE+GGQ+GDT
Sbjct: 462 ------------AYNEQLATITAIYKNGQPVDSLNAGEEGLVILDKTAFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     +TD QK       H   VE G L     +   ID + R  + +NHSATH
Sbjct: 510 GLLRNDSGSFIVTDTQKYG-QAIGHIGKVESGSLVINHRIDAKIDVERRDAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +H + +T+A+L+ +ED VN  I +N P+ T
Sbjct: 569 LLHAALRQVLGEHVSQKGSLVNDKYLRFDFSHFEAMTAAQLREVEDIVNAQIRKNTPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY +RVRV+S+    GG  S  LCGGTH S TG+I L  I+
Sbjct: 629 ELMDLESAKAKGAMALFGEKYEERVRVLSM----GGDFSIELCGGTHASRTGDIGLFRIL 684

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG+ A   +  Q E+L ++A  LK    ++V +V+   E+ R+L+
Sbjct: 685 SESGTAAGVRRIEATTGESALESVHSQSEQLNAIAHLLKGDMSSLVEKVKSALEKSRQLE 744

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++  + K L++++D L+ +++S II+
Sbjct: 745 KEILQLKDQQASQESASLSSKAKDIKGVKLLVSQLNNTEPKLLRTMVDDLKNQLKSAIIV 804

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   +   K S+++ VT DL  +  A DL    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 805 L-STTSGDKVSIIVGVTNDLTAKIKAGDLISYVAQQV-GGKGGGRPDMAQAGGTDVSALP 862

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 863 TAMASVEDWV 872


>gi|315635122|ref|ZP_07890400.1| alanine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315476084|gb|EFU66838.1| alanine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 874

 Score =  931 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 554/912 (60%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FKN+F G EK  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKNVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHYGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RL++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKERLWVTVYETDDEAYNIWHKEIGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+FK LI    ++TG K   N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFKTLIAKVAELTGEKDLANK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG TE     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIDVMAEAGEEVKKQQATVEKF 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+++  + +L+G+VAFKLYDT+G PLD+  D+   RG 
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALANVK-ENVLSGEVAFKLYDTYGFPLDLTADVCRERG- 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID + F + +E QR RA++ S           + S+    G T+F GY          
Sbjct: 417 IAIDEVGFEREMELQRVRAQSASQFGM------DYNSVIRVDGTTRFEGYTESETL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+  +G  VE   +GQ   V+ D TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVTALFHEGNPVESISAGQSAVVILDNTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G+G    + D QK    +F H   + +G L    S+   +D   R+++S+NHSAT
Sbjct: 508 IGRLEGNGFCFDVKDTQKYG-QVFGHIGELTQGSLSVGQSVNAVVDDVRRQRISLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++   LRFD    + I+ A+L  +E  VN  +  N P+ 
Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDTLLRFDFAQHEAISKAQLAEVERIVNQQVRANNPIQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM  E A A GA AL G KY+++VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMELEAAKAKGAMALFGEKYSEQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+E+++ AGIRRIEAITG+ A   L  Q   L   A  LK    +V  ++  + ++Y+K+
Sbjct: 682 VTETAVAAGIRRIEAITGETAIEWLQHQQTLLNQSAELLKSDVNSVTDKISLLQDKYKKV 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  +I  V+ +   +  +++K L++++D+L+ ++ S ++
Sbjct: 742 EKELQTLKEKAALQAGNDLAKSAVEINGVSVIVQQLDGIEAKSLRAMVDSLKNQLGSAVV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +      ++K ++++ VT+DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 VFASAL-DEKVNLIVGVTQDLTAKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTEPQNI 859

Query: 886 DQAIAGVASFLK 897
           ++A++  + +LK
Sbjct: 860 NKALSVCSDWLK 871


>gi|317049269|ref|YP_004116917.1| alanyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316950886|gb|ADU70361.1| alanyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 875

 Score =  931 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 547/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT  + F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIAYAWELLTGEQWFK 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKDRLWVTVYETDDEAYDIWANDIGIPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMQPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF  LI++   VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFAKLIKSVADVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  +L + +  +E  L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIEVMGSAGEDLQRQQAQVENVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL+RGL LLD  L+ L   + L+G+  F+LYDT G P+D+  D+   R L 
Sbjct: 361 KAEEEQFAKTLERGLALLDEELAKLQ-GDTLDGETVFRLYDTFGFPVDLTADVCRERDLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F  A+E+QR RAR              + ++     A+ F GYD L        
Sbjct: 420 -IDEAGFEVAMEQQRQRAREA------SGFGADYNNVIRIDSASAFKGYDQL-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++S V+A+   G+ V+   +GQ   VV D+TPFY E+GGQ+GDT
Sbjct: 465 ---------------ALASTVQALFVDGQQVDHVSAGQDAVVVLDETPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     + D QK       H   + +G LR    L   +D + R ++ +NHSATH
Sbjct: 510 GVLAGNNAEFSVQDTQKYG-QAIGHIGKLTQGQLRVGDRLNAQVDEERRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NL V T
Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLAVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY+ RVRV+S+     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDQRVRVLSM-----GDFSTELCGGTHAARTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +  Q  +L  +A  +K +  N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALAQVNAQSHQLHDIAQLVKANSSNLNEKVRGLVDHVRALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++          +     +   +S V+ K L+++MD L+ ++ S II+
Sbjct: 744 KELQQLRDQQAAQESASLSSKAIDVKGTKLLVSELSNVEPKMLRTMMDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  VT+DL DR  A +L    A  + GG GGGRP MAQ+GG N     
Sbjct: 804 LATVA-EGKVSLIAGVTKDLTDRVKAGELVGELAAQV-GGKGGGRPDMAQAGGTNPQALA 861

Query: 887 QAIAGVASFL 896
            A+AGV  ++
Sbjct: 862 GALAGVQDWV 871


>gi|240949596|ref|ZP_04753931.1| alanyl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240295854|gb|EER46530.1| alanyl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 874

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FFQ  GH ++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFQSKGHTVVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+ AD IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKIVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+   GGLP    E+G+R+IE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDKYWGGLPGTPEEDGDRFIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ID+F+ LI+   ++  +K    +  + RVI DH+RS S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYEIDIFQTLIKTVAELLNVKD--LDNKSLRVIADHIRSCSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  +LG  E     L+P L   MG A   + Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLAQVMGHAGEIVAQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  ++ L+GDVAFKLYDT+G PLD+  D+   R  
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NKTLSGDVAFKLYDTYGFPLDLTADVCRERN- 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   ++ QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 417 IAIDEAGFEAEMQAQRERAKASSNFG------VDYNNVIKVDGKTNFIGYDNL------- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V  +   G  V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 464 ----------------TAEATVVGLFSNGNAVDVIKSGENAIIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +  +  + D QK    +F H   +E G L+    +   +  + R  + +NHSAT
Sbjct: 508 SGRISTEFCQFNVADTQKYG-QVFGHIGQLEAGELKVGDKVTAEVAAERRHSIQLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LGSHV Q GS +   GLRFD +  + IT  +L+ IE  VN  I +N+ VV
Sbjct: 567 HLLHSALRKVLGSHVMQKGSLVNEKGLRFDFSQPEAITKEQLEEIERIVNAKIRENIQVV 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M  E+A A GA AL G KY D VRVV +      V S  LCGGTHV  TG+I L  +
Sbjct: 627 IEEMGIEEAKAKGAMALFGEKYGDIVRVVDM-----SVFSIELCGGTHVKRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE ++ AG+RR+EAITG+ A + L    +  +  A  LK    N+V +++++ ++ ++L
Sbjct: 682 TSEGAVAAGVRRVEAITGEAALAWLHNLQQMTQHSAELLKADSTNLVEKIQQLQDKAKRL 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +   +          +I  VN +   +   + K L++++D L+ ++ S I+
Sbjct: 742 EKELQQLKEKQASQAGADLAKQAKQINGVNVVVTQLENAEPKVLRTMVDDLKNQLGSAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   ++K ++++ V+ DL  +  A +L    AK   GG GGGRP MA +GG      
Sbjct: 802 VL-GTVVDEKVNLIVGVSSDLTTQIKAGELVGEMAK-CVGGKGGGRPDMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
            +A+     +++
Sbjct: 860 AKALNFAQEWIQ 871


>gi|209884575|ref|YP_002288432.1| alanyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
 gi|209872771|gb|ACI92567.1| alanyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
          Length = 909

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/908 (52%), Positives = 619/908 (68%), Gaps = 38/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR++FL FF KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 22  MSGVNEIRSSFLNFFAKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKLPYQR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TKEF L
Sbjct: 82  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKDRAIELAWTLITKEFGL 141

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EA  LWKKI+GL   K+IRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 142 PKDRLLVTVFSEDDEAASLWKKIAGLPDSKVIRIATSDNFWQMGDTGPCGPCSEIFFDHG 201

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + +PGG P    E+G+R+IEIWNLVFMQFEQ     R  LP  SIDTGMGLERMA VLQ 
Sbjct: 202 DKVPGGPPGSPDEDGDRFIEIWNLVFMQFEQTAGGVRTPLPHPSIDTGMGLERMAAVLQG 261

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+IDLF  LI+A   +TG    G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 262 KHDNYEIDLFVALIRAISDLTGTDPHGPQKASLRVIADHLRASSFLIADGVLPSNEGRGY 321

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPEL++A+ L+EETL+ E+ RF 
Sbjct: 322 VLRRIMRRAMRHAQLLGAKEPLMYRLVWALVREMGQAYPELVRAESLVEETLKLEETRFR 381

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L   ++ +G+ AF LYDT+G PLD+ QD L  RG+  +D+ SF 
Sbjct: 382 KTLDRGLAILDEKSASLKPGDMFDGETAFTLYDTYGFPLDLTQDALRTRGIH-VDLASFT 440

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G    EK+WF L E+ GAT+F+GYD                  
Sbjct: 441 DAMEQQKAKARASWAGSGDAAAEKVWFPLHEELGATEFLGYD------------------ 482

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G +V+   +G    VV +QTPFY E+GGQ+GDTG   GDG 
Sbjct: 483 -----TEIAEGVVTALVKDGAVVDSLNAGDAAAVVLNQTPFYGESGGQVGDTGILTGDGG 537

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R ++TD QKKA  +FVH   +E+G L+   +L L +D+  R  +  NHSATHLLH AL 
Sbjct: 538 VRFRVTDTQKKAGDLFVHVGTLEQGALKKGAALQLEVDHTRRGAIRANHSATHLLHEALR 597

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS ++P+ LRFD  H+KPI + EL+ IED  NDI+ QN  V TR+M  +D
Sbjct: 598 QVLGDHIAQRGSLVSPERLRFDFAHTKPIAADELRRIEDIANDIVLQNSEVTTRLMGLDD 657

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A +SGA AL G KY D VRVVS+    G     S  LCGGTHV  TG+I L+ I  ES++
Sbjct: 658 ARSSGARALFGEKYGDEVRVVSMGQTSGNALGWSVELCGGTHVKRTGDIGLVSITGESAV 717

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA+TG+ AR       E  K+ A+ LK +  ++  RV  + EE +KL+   + 
Sbjct: 718 ASGVRRIEALTGRAARHAANHSIETAKAAAAELKTTLEDMPARVAALVEERKKLERDLSD 777

Query: 777 RKLQLNVEDLS----------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            + +L +   +             + DV  ++  +  ++ K+LKS+ D  +K++ SG++ 
Sbjct: 778 ARKKLAMGGGAGGNGSTAASDVRNVGDVKLLARAVQGIEVKDLKSLADQGKKQLGSGVVA 837

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LV  S++ KASV++ VT DL  RFNAVDL R +++VLGG GGGG+P MAQ+GGP+G+KAD
Sbjct: 838 LVATSEDGKASVVVGVTPDLTSRFNAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSKAD 897

Query: 887 QAIAGVAS 894
            A+  + +
Sbjct: 898 AALKAIEA 905


>gi|238027796|ref|YP_002912027.1| alanyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237876990|gb|ACR29323.1| Alanyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 874

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/910 (41%), Positives = 536/910 (58%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  +W+LLT  + L 
Sbjct: 61  TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHYSWELLTSVYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 KEKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK SIDTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPSIDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEGRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEERFLETIEHGMTILEAALAELDAKGGKLLDGELAFKLHDTYGFPLDLTADVCREREVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +   +            T F GY+ L        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQGLD-------YSGAKTTFHGYEKLALDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+   G  V EA +G++  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKIVALYVGGTAVNEAKAGEQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  VE+G L+    L   +D + R +   NHSATH
Sbjct: 509 GTLANAAARFAVEDTLKVQADVIGHHGTVEQGALKVGDVLRAEVDAERRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +  +  RFD  H+ P++  E++ +E  VN  I  N P + 
Sbjct: 569 LMHKALREVLGGHVQQKGSLVDAEKTRFDFAHNAPLSDEEIRRVEAIVNAEILANAPGII 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M+ ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I    IV
Sbjct: 629 RNMSYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D +L + A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQELDARLSTAAAMLKAQPAELTQRIAQVQDQLKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L              +  +  ++  +   DSK L+   D L+ K++   ++
Sbjct: 743 KELAALKSRLASSQGDELAQQAVDVKGLRVLAATLEGADSKTLRETADKLKDKLKHAAVV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKQVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPGKLP 860

Query: 887 QAIAGVASFL 896
           +A+AGVA+++
Sbjct: 861 EALAGVAAWV 870


>gi|109899322|ref|YP_662577.1| alanyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|123360521|sp|Q15RG5|SYA_PSEA6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|109701603|gb|ABG41523.1| alanyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
          Length = 865

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/903 (42%), Positives = 560/903 (62%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL FF   GH+ + SSSL+P +DPTL+FTN+GM  FK++F G E+  Y   
Sbjct: 3   KSTAQIRQAFLNFFADKGHQKVSSSSLVPSDDPTLLFTNAGMNQFKDVFLGTEQRKYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI  AW  LT+   L 
Sbjct: 63  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHQAIGYAWSFLTEVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L +TVY ED+EAF +W    G+  +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 123 KDKLLVTVYSEDDEAFDIWHNDIGIPKEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 182

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS  E+G+R+IEIWNLVFMQF +Q   +   LPK SIDTGMGLER++ ++Q  
Sbjct: 183 HIWGGPPGSPEEDGDRFIEIWNLVFMQFNRQANGDMLPLPKPSIDTGMGLERISAIIQNV 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID+F++LI+A+ ++ G+        + RV+ DH+RS SFLI+DG++P+NEGRGYV
Sbjct: 243 HSNYEIDIFQNLIKATAKIVGVT--SLEDKSLRVVADHIRSCSFLISDGVMPSNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL TEMG AYPEL + + +IE+ LR E+E+F +
Sbjct: 301 LRRIIRRAVRHGNKLGANGVFFYKLVAALATEMGDAYPELNEQRAVIEKVLRVEEEQFSR 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG+++L+  L+ L   +++ GDV FKLYDT+G P D+  D+   +GL+ ID   F Q
Sbjct: 361 TLERGMLILNDALNELE-GKVVPGDVVFKLYDTYGFPADLTNDVAREKGLS-IDEEGFEQ 418

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+ EQR RA+           +  +         + F+GY+                   
Sbjct: 419 AMAEQRKRAQKA------SNFDVDYNEQLRSDLESIFVGYEH------------------ 454

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   ++ +  +  +G+ V E  +G +  V+ D++PFYAEAGGQ GDTG  + D   
Sbjct: 455 -----EDNTATITELFFKGQSVNELAAGAEGTVILDESPFYAEAGGQAGDTGTLVTDAGG 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             + D  K  + I    A + +       S++  ++   R  + +NHSATHL+H AL +I
Sbjct: 510 FSVKDTVKLGKAIAHKGAALSKLS--VGDSVLAKVNGVRRHAIKLNHSATHLMHAALKSI 567

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  D LRFD +H + ++  ++ ++E  VN+ I  N P+ T++M  E A 
Sbjct: 568 LGEHVNQKGSLVQADRLRFDFSHFEAMSKEQVLAVETMVNEQILANHPLQTQLMGLEQAK 627

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY+D VRVVS+     G  S  LCGGTHV  TG+I L  I+SES I +G+
Sbjct: 628 EAGAMALFGEKYDDDVRVVSM-----GSFSMELCGGTHVERTGDIGLFKIISESGIASGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A  H+  Q  +L S+++ LK    +   RV ++ E+ + L+   AK K +
Sbjct: 683 RRIEAVTGLTALQHVQQQTFELSSISAVLKTDVNSAGERVVQLIEQTKTLEKEVAKLKQE 742

Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +     S      ++I  V  +S+ +  ++S  L++++D L+ +I SG+I+L G++   K
Sbjct: 743 IANSAGSDLLSQINEINGVKVLSYHVQGIESGALRTMIDDLKNQIGSGVILL-GLATGDK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG      D AIA V+ +
Sbjct: 802 VSLIAGVTKDLTHKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGSQPENLDTAIASVSEW 860

Query: 896 LKK 898
           L++
Sbjct: 861 LQE 863


>gi|330816605|ref|YP_004360310.1| Alanyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327368998|gb|AEA60354.1| Alanyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 874

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/910 (41%), Positives = 533/910 (58%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  +W+LLT  + L 
Sbjct: 61  TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHYSWELLTSVYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY +D+EA+ +W K  G+  ++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 KEKLWVTVYHDDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK SIDTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPSIDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARETGVADLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGGAYPELKEAEGRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFLETIEHGMTILDAALAELDAKGAKQLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEDIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+   G  V++A +G++  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKIVALYVGGTAVQQAQAGEQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  VE+G L+   +L   ID   R +   NHS TH
Sbjct: 509 GVLANAATRFAVEDTLKVQADVIGHHGTVEQGTLKVGDTLRAEIDAARRARTERNHSVTH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P++  E++ +E  VN  I  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMSDDEIRRVEAIVNAEILANSPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 SNMSYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVRRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D +L + AS LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNALRYVQELDARLNTAASMLKAQPAELTQRIGQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L              +  V  ++  +   DSK L+  +D L+ K++   ++
Sbjct: 743 KELAALKSKLASSQGDELAQQAVDVKGVQVLAATLDGADSKTLRETVDKLKDKLKHAAVV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKQVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFL 896
            A+AGV +++
Sbjct: 861 AALAGVQAWV 870


>gi|307249853|ref|ZP_07531828.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858107|gb|EFM90188.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 874

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +     +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK    +F H   +  G L     +  T+    R  ++ NHSAT
Sbjct: 508 SGLISTEICNFTVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKVKRT 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S      +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|119472239|ref|ZP_01614418.1| alanyl-tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119445057|gb|EAW26352.1| alanyl-tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 866

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/903 (43%), Positives = 543/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF    H+++PSSSLIP ND TL+F N+GMV FK++F G E   Y   
Sbjct: 4   MTTAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   L 
Sbjct: 64  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQEAIKFAWEFLTEVVKLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           Q +L +T+Y +DEEAF+ W K  GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 124 QEKLLVTIYHDDEEAFEYWSKDIGLSEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 183

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS  E+G+R+IEIWNLVFMQ+ +QN      LPK S+DTGMGLER++ +LQ  
Sbjct: 184 HIWGGPPGSPEEDGDRFIEIWNLVFMQYNRQNDGTMLPLPKQSVDTGMGLERISAILQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI A+  VT  +    +  + RV+ DH+RS +FLI+DG++P+NEGRGYV
Sbjct: 244 HSNYEIDLFQGLIAAAASVTNAQDM--DDKSLRVVADHIRSCAFLISDGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL  +MG AYPEL + + +IE+ LR E+E+FGK
Sbjct: 302 LRRIIRRAVRHGNKLGAQGAFFFKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGK 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L+  LS L   +++ GD+ FKLYDT+G P D+  D+   R +  ID   F +
Sbjct: 362 TLERGLAILEESLSDLK-GDVIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHKGFEE 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +  QR  A+        G     +    +    T F GYD                   
Sbjct: 420 CMAVQRKTAQQA------GKFGADYNEQLKSDKHTDFKGYDST----------------- 456

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S+ V  +   GE V+    GQ+  V+ D+TPFYAE+GGQ GDTG     G  
Sbjct: 457 ------HYSATVVEVFAGGEAVQLLEDGQEGIVILDRTPFYAESGGQTGDTGTITVAGGE 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +T+  K        H    +G +     +  TID   R  +  NH+ATH+LH AL  +
Sbjct: 511 FNVTNTTKLGNAF--AHHGTVQGRIGVNDKVDATIDDARRENIKKNHTATHILHEALRQL 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HVSQ GS +  D LRFD +H + +T  EL+ IE  VND I +N  + T +M  +DA 
Sbjct: 569 LGEHVSQKGSLVQADRLRFDFSHFEAVTKDELRDIERVVNDEIRRNFALNTELMAIDDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY+D VRVV++     G +S  LCGGTHV   G+I L  IVSES I AG+
Sbjct: 629 AKGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A +++  Q+++L  +A+ +K    +V+ +V  + E+ + L+   A+   +
Sbjct: 684 RRIEAVTGADAVAYVSEQEQQLSDVAALVKGDSASVLEKVTALLEKSKGLEKQIAQLNDK 743

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S  +I  V  +   +   +SK L+ ++D L+ KI SG+I L G++   K
Sbjct: 744 LASAAGASLLDSIVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVASGDK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  +  A +L    A  + GG GGGRP MAQ+GG        A+  V ++
Sbjct: 803 VSLIAGVTKDLTGKVKAGELVNHMASQV-GGKGGGRPDMAQAGGSEPQNLAAALDSVTAW 861

Query: 896 LKK 898
           L +
Sbjct: 862 LTE 864


>gi|304391435|ref|ZP_07373377.1| alanyl-tRNA synthetase [Ahrensia sp. R2A130]
 gi|303295664|gb|EFL90022.1| alanyl-tRNA synthetase [Ahrensia sp. R2A130]
          Length = 884

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/906 (51%), Positives = 609/906 (67%), Gaps = 34/906 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL +F+KNGH  + SS L+P NDPTLMFT +GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNDIRSTFLSYFEKNGHAAVDSSPLVPRNDPTLMFTAAGMVQFKNLFTGLETRNYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT+E+ +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIEFAWNLLTEEYGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TVY +D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DASRLLVTVYHDDDEAFDLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQFEQ    ER  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQFEQVTVDERVNLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLFK LI ASEQ TG+  + N   +HRVI DHLR+S FLIADG+LP NEGRGY
Sbjct: 241 THDNYEIDLFKALISASEQATGVGSDDNTRASHRVIADHLRASCFLIADGVLPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG A+PEL + + L+ ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHASLLGAQDPLMYRLVPALVAQMGEAFPELRRTQSLMTETLNLEEVRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LLD   + L   + L+G VAFKLYDT+G PLD+ QD L  R +  +D   ++
Sbjct: 361 KTLTRGLDLLDTASADLKAGDALDGRVAFKLYDTYGFPLDLTQDALRRRDIT-VDTDEYS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+EEQ++ ARA   G G    + IWF L+EK+GAT+F+GY+                  
Sbjct: 420 TAMEEQKAVARASWAGAGGAADDAIWFKLREKHGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V AI+Q G  V  A  G +V V+ +QTPFYAE+GGQ+GDTG  +    
Sbjct: 462 -----TEKAEGSVLAILQDGAEVSTAKKGDEVSVILNQTPFYAESGGQMGDTGTLVVGET 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L ITD +K+ +G+FVH   V+ G L+      L ID+  R +L  NHSATHL+H AL  
Sbjct: 517 KLTITDTKKRGDGLFVHMGTVDSGTLKVGDGASLEIDHARRSKLRSNHSATHLVHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HVSQ GS + P+ LRFD +HSKP+ + E++ IE   N+ + QN  V T +M  +DA
Sbjct: 577 TLGDHVSQKGSLVAPERLRFDFSHSKPVETEEMRRIEAMANEYVLQNSQVSTTLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           I  GA A  G KY D VRVVS+       +    S  LCGGTHV +TG+I L+ +V ES+
Sbjct: 637 IELGAQAQFGEKYGDEVRVVSMGKVGEGNEAKAWSLELCGGTHVKNTGDIGLVTVVGESA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TGQ AR +L+ QDE L+S A+ LK +  +V  RV  + +E +KL+   A
Sbjct: 697 VSSGVRRIEALTGQAAREYLLQQDELLRSTAAKLKTTPADVPTRVAALIDERKKLERELA 756

Query: 776 KRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K QL +      + +   I  V F+  ++  V  ++LK ++D  + +I SG++ +   
Sbjct: 757 EAKKQLALGVDGGTEAAAEDIGGVQFVGRVLQGVSPRDLKGLVDEEKTRIGSGVVAIAAN 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +++ K +V++ VT+DL DRF+AV L R  ++ LGG GGGGRP MAQ+GGP+G   D A+ 
Sbjct: 817 NEDGKGAVVVGVTKDLTDRFDAVVLVRAGSEALGGKGGGGRPDMAQAGGPDGANVDAALD 876

Query: 891 GVASFL 896
            V + L
Sbjct: 877 AVRAAL 882


>gi|300718056|ref|YP_003742859.1| Alanyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299063892|emb|CAX61012.1| Alanyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 875

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/910 (43%), Positives = 549/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTGAQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWEKEVGVPRERIIRIGDNKGGAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS  E+G+R+IEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRFIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF  LI +  +VTG         + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFARLIASVAEVTGATD--LTSKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG        L+  L + MGSA  EL   +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAQGSFFWKLVGPLISVMGSAGEELASQQSQVEQIL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL+RGL LLD  L  L   + L+G+  F+LYDT G P D+  D+   R L 
Sbjct: 361 KTEEEQFAKTLERGLALLDEELEKLQ-GDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR              +  + +   A+ F GY+ L        
Sbjct: 420 -IDEAGFEKAMEQQRQRAREA------SGFGADYSKVIQIDAASAFKGYEQLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++S V AI   G+   E V+GQ+  +V D+TPFY E+GGQ+GDT
Sbjct: 466 ----------------LNSTVTAIFVDGKPATEIVAGQEGVIVLDETPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK       H   +  G +R    L   +D   R ++ +NHSATH
Sbjct: 510 GELKSDAATFTVNDTQKYG-QAIGHTGTLAAGQIRIGDRLSAQVDQARRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   E++ +E+ VN  + +NL + T
Sbjct: 569 LLHAALRQVLGHHVAQKGSLVNDKYLRFDFSHFEAMKPEEIRQVEEIVNAQVRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A + GA AL G KY+D VRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMELEAAKSHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A   +  Q E+L+ +A  +K +  N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALGLMYAQSEQLQEIAHLIKANNSNLNEKVRAMIDHVRGLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I     +   +S V+ K L++++D L+ +++S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSKAIEIKGTRLLVSELSNVEPKMLRTMVDELKNQLKSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRVKAGELVGELAQQV-GGKGGGRPDMAQAGGTDAQALP 861

Query: 887 QAIAGVASFL 896
            A+AGV S++
Sbjct: 862 AALAGVESWV 871


>gi|148828002|ref|YP_001292755.1| alanyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|205830061|sp|A5UHW6|SYA_HAEIG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148719244|gb|ABR00372.1| alanyl-tRNA synthetase [Haemophilus influenzae PittGG]
          Length = 874

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 547/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  +KK ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DKKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|145630561|ref|ZP_01786341.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144983951|gb|EDJ91393.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
          Length = 874

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/913 (42%), Positives = 547/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGTTD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYA++GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAKSGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK    +F H   + +G L+   S+   +D +     S+NHSAT
Sbjct: 508 SGYLSTQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRLHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQALKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|54310165|ref|YP_131185.1| alanyl-tRNA synthetase [Photobacterium profundum SS9]
 gi|46914606|emb|CAG21383.1| putative alanyl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 906

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/910 (41%), Positives = 533/910 (58%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 36  MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRA 95

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L 
Sbjct: 96  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLP 155

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           Q RL +T+Y+ D+EAF +W K  G+ AD+I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 156 QDRLLVTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCSE 215

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG P    E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+
Sbjct: 216 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 275

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ S +V G  YE  +  + RV+ DH+RS +FLI DG++P+
Sbjct: 276 AAIMQGVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPS 333

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG +      L+  L   MG+A  EL + + L+E+ L+ 
Sbjct: 334 NEGRGYVLRRIIRRAVRHGNKLGASGAFFYKLVGPLAEIMGTAGDELKKRQALVEKILKI 393

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++ FG+TLDRGL +L+  L +L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 394 EEDNFGRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 451

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN A+E QR RAR        G     +    +    T+F GY             
Sbjct: 452 DEEGFNNAMEAQRQRAREA------GKFGVDYNESIKVDVNTEFCGYT------------ 493

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S + A+ + GE V+  ++G+   ++ D TPFYAE+GGQ GD G 
Sbjct: 494 -----------GTAAQSSIVALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGV 542

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     ++D QK       H   + +G L     L   +D   R  +++NHSATHLL
Sbjct: 543 LTAENTVFNVSDTQKFGA-AIGHQGSLVQGALNVGDKLEAQVDVVRRTAITLNHSATHLL 601

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS + PD LRFD ++ + +   +L+ IE  VN+ I  N  + T I
Sbjct: 602 HSALRNLLGEHVAQKGSLVKPDALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNI 661

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H  +TG+I L  I SE
Sbjct: 662 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSE 716

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG  A   L  Q+  L   AS +K    +V  +V  +    ++L+  
Sbjct: 717 GGIAAGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKD 776

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + + +L  ++ +       +I  V  +   +   D+K L+ ++D ++ K+ SGI++L 
Sbjct: 777 IQQLQDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLG 836

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S + K  +++ VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A
Sbjct: 837 NVSGD-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAA 894

Query: 889 IAGVASFLKK 898
           +  V  +L +
Sbjct: 895 LESVTPWLTE 904


>gi|148826541|ref|YP_001291294.1| alanyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|229845865|ref|ZP_04465977.1| alanyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|205830060|sp|A5UDR0|SYA_HAEIE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148716701|gb|ABQ98911.1| alanyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|229810869|gb|EEP46586.1| alanyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 874

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/913 (42%), Positives = 548/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKSAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSIIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLTQIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEAITGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAITGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVITQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|307256675|ref|ZP_07538454.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306864723|gb|EFM96627.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 874

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +     +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK    +F H   +  G L     +  T+    R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRKNIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S      +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|165976064|ref|YP_001651657.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|205829970|sp|B0BNS8|SYA_ACTPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|165876165|gb|ABY69213.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 874

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +     +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK    +F H   +  G L     +  T+    R  ++ NHSAT
Sbjct: 508 SGLISTEICNFTVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S      +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|134295482|ref|YP_001119217.1| alanyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|205830008|sp|A4JDM9|SYA_BURVG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|134138639|gb|ABO54382.1| alanyl-tRNA synthetase [Burkholderia vietnamiensis G4]
          Length = 874

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 537/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDQRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT       N  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTETAD--LNNNSLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGSSVGEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVQRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVFVLAATLDGADAKTLRETVDKLKYKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 GALAGVKGWIE 871


>gi|167563044|ref|ZP_02355960.1| alanyl-tRNA synthetase [Burkholderia oklahomensis EO147]
          Length = 874

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 532/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A +IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAGRIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARETGIGDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A   + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGEAYPELKEAGQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L  L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALGDLESKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +   +            T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQGLD-------YSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYIDGSSVNEVKAGQSAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAVTRFAVADTLKVQADVIGHHGELEQGALKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  H+   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRHVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L         L   ++  V+ ++  +   D+K L+  +D L+ K+++  I+
Sbjct: 743 KELAALKSKLASSQGDELALQAIEVGGVHVLAATLDGADAKTLRETVDKLKDKLKNAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAVD-GGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 AALAGVKGWVEE 872


>gi|145628290|ref|ZP_01784091.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145638384|ref|ZP_01793994.1| alanyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|144980065|gb|EDJ89724.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145272713|gb|EDK12620.1| alanyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|309751524|gb|ADO81508.1| Alanyl-tRNA synthetase [Haemophilus influenzae R2866]
          Length = 874

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/913 (42%), Positives = 550/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G      +  + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LSNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ +  D++L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALAQVK-DDVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFHDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNTIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|59798539|sp|Q6LMU3|SYA_PHOPR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 873

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/910 (41%), Positives = 533/910 (58%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           Q RL +T+Y+ D+EAF +W K  G+ AD+I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 QDRLLVTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG P    E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+
Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ S +V G  YE  +  + RV+ DH+RS +FLI DG++P+
Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG +      L+  L   MG+A  EL + + L+E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGASGAFFYKLVGPLAEIMGTAGDELKKRQALVEKILKI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++ FG+TLDRGL +L+  L +L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 361 EEDNFGRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN A+E QR RAR        G     +    +    T+F GY             
Sbjct: 419 DEEGFNNAMEAQRQRAREA------GKFGVDYNESIKVDVNTEFCGYT------------ 460

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S + A+ + GE V+  ++G+   ++ D TPFYAE+GGQ GD G 
Sbjct: 461 -----------GTAAQSSIVALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGV 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     ++D QK       H   + +G L     L   +D   R  +++NHSATHLL
Sbjct: 510 LTAENTVFNVSDTQKFGA-AIGHQGSLVQGALNVGDKLEAQVDVVRRTAITLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS + PD LRFD ++ + +   +L+ IE  VN+ I  N  + T I
Sbjct: 569 HSALRNLLGEHVAQKGSLVKPDALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H  +TG+I L  I SE
Sbjct: 629 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG  A   L  Q+  L   AS +K    +V  +V  +    ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKD 743

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + + +L  ++ +       +I  V  +   +   D+K L+ ++D ++ K+ SGI++L 
Sbjct: 744 IQQLQDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLG 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S + K  +++ VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A
Sbjct: 804 NVSGD-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAA 861

Query: 889 IAGVASFLKK 898
           +  V  +L +
Sbjct: 862 LESVTPWLTE 871


>gi|307254463|ref|ZP_07536300.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258922|ref|ZP_07540653.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306862604|gb|EFM94561.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306866946|gb|EFM98803.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 874

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +     +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G          + D QK    +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTGICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S      +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|145632173|ref|ZP_01787908.1| alanyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|144987080|gb|EDJ93610.1| alanyl-tRNA synthetase [Haemophilus influenzae 3655]
          Length = 874

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 549/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G      +  + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LSNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKILANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|296158159|ref|ZP_06840991.1| alanyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295891495|gb|EFG71281.1| alanyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 874

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/911 (41%), Positives = 539/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 KDKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  +MG+AYPEL  A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGAAYPELKDAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+G L+ L     + L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEERFFETIEHGMSILEGALAELEAGSSKTLDGELAFKLHDTYGFPLDLTADVCREREVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA      +         L+     T F GYD +        
Sbjct: 419 -VDEAAFDEAMTRQREQARAAGKFKMAQG-------LEYSGEKTTFHGYDEIVFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V++A  GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVIALYVEGASVQQASQGQQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 569 LMHKALREVLGTHVQQKGSLVDADKTRFDFAHNAPLTDEQIRRVEEIVNAEVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMSFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRIVQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++  V+ ++  +   D K L+  +D L+ K++S  I+
Sbjct: 743 KELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|303253696|ref|ZP_07339833.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247624|ref|ZP_07529667.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302647421|gb|EFL77640.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306855894|gb|EFM88054.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 874

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +     +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK    +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S      +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|146341851|ref|YP_001206899.1| alanyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
 gi|205829995|sp|A4YXQ6|SYA_BRASO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146194657|emb|CAL78682.1| alanyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
          Length = 891

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/896 (51%), Positives = 606/896 (67%), Gaps = 39/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL FF  NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLNFFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWKLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY +D+EAF LWKKI+GL   +IIRI  +DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLTATVYIDDDEAFGLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+E +G+R+IEIWNLVFMQ+EQ     R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DKIWGGPPGSAEADGDRFIEIWNLVFMQYEQLEGGVRNPLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A   +T    +G    + RVI DHLR+SSFLI+DG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAIADLTNADPQGPQKASLRVIADHLRASSFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPELI+A+ LI+ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMHKLVGALTREMGQAYPELIRAEGLIKETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L K ++ +GDVAF LYDT+G PLD+ QD L +RG   +D  SF 
Sbjct: 361 KTLERGLAILDEKSASLSKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRG-ISVDQASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++ARA   G G   TE +WF L+EK GAT+F+GY+                  
Sbjct: 420 DAMERQKAKARAAWAGSGEAATETVWFPLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G  V+   +G+   +V +QTPFY E+GGQ+GDTG   G+G+
Sbjct: 462 -----TETAEGAVTALVKDGAEVDSLKAGESGAIVLNQTPFYGESGGQVGDTGVLTGEGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R++ITD QKKA  +F H   VE+G L+    L L +D+  R  +  NHSATH+LH AL  
Sbjct: 517 RVRITDTQKKAGDLFAHIGTVEQGTLKLGTPLQLDVDHIRRSAIRANHSATHILHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS ++PD LRFD  H KPIT+ EL  +ED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVSPDRLRFDFVHPKPITAEELARVEDIANDVVLENAEVTTRLMGLDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ + SE
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGNAARDHGNNAMGWSVELCGGTHVKRTGDIGLIAVTSE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+T + AR+H        K+ A+ L+ +   V  R+  + EE +KL+  
Sbjct: 697 SAVASGVRRIEALTARGARAHANHNLSLAKAAAAELRTTVDEVPARITALMEERKKLERE 756

Query: 774 HAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            +  + +L +              ++A +  M+  +  V+ K+LKS++D  +K++ SG++
Sbjct: 757 LSDARKKLAMGGGAAAGGAAAGIREVAGIKLMARAVDGVEVKDLKSLVDEAKKQLGSGVV 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +VG S++ KA V++ VT DL  RFNAV+L R +++ LGG GGGGRP MAQ+GGP+
Sbjct: 817 AIVGRSEDGKAGVVVGVTADLTARFNAVELVRAASEALGGKGGGGRPDMAQAGGPD 872


>gi|307245509|ref|ZP_07527596.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306853568|gb|EFM85786.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
          Length = 874

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +     +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDKAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G          + D QK    +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTGICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S      +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|53729167|ref|ZP_00134001.2| COG0013: Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208134|ref|YP_001053359.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20]
 gi|205829968|sp|A3N018|SYA_ACTP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126096926|gb|ABN73754.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 874

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/912 (41%), Positives = 542/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +     +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQT FYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTSFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK    +F H   +  G L     +  T+    R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S      +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|229844682|ref|ZP_04464821.1| alanyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|229812396|gb|EEP48086.1| alanyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 874

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 550/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI+ + ++ G      +  + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIEKTAEIVGATD--LSNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|322514279|ref|ZP_08067338.1| alanine--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322119833|gb|EFX91853.1| alanine--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 874

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSLQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+   GGLP    E+G+RYIE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDTFWGGLPGTPEEDGDRYIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +     +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEILTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMSAQRERAKASSNFG------TDYSNVIKVDGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIHSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +     ++D QK    +F H   +  G L     +   ++   R+ ++ NHSAT
Sbjct: 508 NGLISTEICEFTVSDTQKYG-QVFGHVGQLTSGSLAIGDKVTAHVEINRRQAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ D LRFD +  + IT A+L+ IE  VN  I +N+ VV
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSEDALRFDFSQPEAITKAQLEEIERIVNRNIRENIQVV 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TGEI L  +
Sbjct: 627 IETMDIESAKQKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQHTGEIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AG+RR+EA+TG++A   L  Q   ++  A  LK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGVRRVEAVTGEKAMDWLHNQQRVIQQSAELLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +   +  S       +I  VN +   +  V++K L++++D L+ + ++ I+
Sbjct: 742 EKELQQLKDKFAAQAGSELAKQASQINGVNVIVQKLEGVETKSLRTMVDDLKNQFENAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   ++ + K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VFGSVA-DDKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQHL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DSALKFAQEWIQ 871


>gi|190149963|ref|YP_001968488.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263291|ref|ZP_07544909.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|205829969|sp|B3H177|SYA_ACTP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|189915094|gb|ACE61346.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871353|gb|EFN03079.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 874

 Score =  928 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +     +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------ADYNNVIKVEGQTDFIGYDNL------- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 464 ----------------AAQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK    +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S      +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|90423082|ref|YP_531452.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
 gi|122476792|sp|Q218Q3|SYA_RHOPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|90105096|gb|ABD87133.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
          Length = 890

 Score =  928 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/912 (51%), Positives = 627/912 (68%), Gaps = 40/912 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK     
Sbjct: 1   MSGVNEIRSAFLNYFGKDGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EAF LWKKI+GL   KIIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PKERLLVTVFSEDDEAFALWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R+IEIWNLVFMQF+Q    +R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIPGGPPGSPEEDGDRFIEIWNLVFMQFDQIAPGQRNPLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF+ LI+A  ++TG   +G +  + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFQALIRAIAELTGADPKGEHKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM + +LLG TEPLM  L+ AL  EMG AYPEL++A+ +IEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHGQLLGATEPLMWRLVWALVREMGQAYPELVRAEPMIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL++LD   S L K ++ +G+ AF LYDT+G PLD+ QD L  RG   +DI SF 
Sbjct: 361 KTLDRGLIILDEKSSTLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRG-ISVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WF L+E+ GAT+F+GY+                  
Sbjct: 420 DAMDRQRAKARASWAGSGDTATETVWFGLREQLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G+ V++   G+   +V +QTPFYAE+GGQ+GDTG   G+G+
Sbjct: 462 -----TETAEGVVAALVKDGQKVDQLKVGEAGAIVLNQTPFYAESGGQVGDTGVMTGEGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++T+ QKKA  +FVH   VE+G L  + +L+L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTETQKKAHDLFVHLGTVEQGTLTPDTALLLEVDHTRRSSIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS +  D LRFD  H KPI++ EL+ +ED  N+++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAEDRLRFDFVHQKPISADELRRVEDIANEVVLENDEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVV++         +    S  LCGGTHV  TG+I L+ I  E
Sbjct: 637 REAGARALFGEKYGDEVRVVTMGKSARQHGSNALGWSVELCGGTHVRRTGDIGLISITGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG+ AR       +  K+ A+ L+ S  ++  RV  + +E +KL+  
Sbjct: 697 SAVASGVRRIEALTGRFARQSANAAIDTAKATAAELRTSVDDMPARVAALMDERKKLERE 756

Query: 774 HAKRKLQL---------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            A+ + +L            +    ++  V  ++  +  ++ K+LKS++D  +K++ SG+
Sbjct: 757 LAEARKKLAMGGGGAAAANGEAGVREVGGVKLLARAVEGIEIKDLKSLVDQGKKQLGSGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I LV  S + K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K
Sbjct: 817 IALVATSADGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 876

Query: 885 ADQAIAGVASFL 896
           A  A+  +A  +
Sbjct: 877 AQAALDAIAEAI 888


>gi|303249632|ref|ZP_07335837.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307252204|ref|ZP_07534102.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302651444|gb|EFL81595.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860348|gb|EFM92363.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 874

 Score =  928 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +     +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------ADYNNVIKVEGQTDFIGYDNL------- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 464 ----------------AAQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK    +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S      +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|91784488|ref|YP_559694.1| alanyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|122970272|sp|Q13W97|SYA_BURXL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91688442|gb|ABE31642.1| alanyl-tRNA synthetase [Burkholderia xenovorans LB400]
          Length = 874

 Score =  928 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/911 (41%), Positives = 540/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 KDKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  +MG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+G L+ L     + L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEERFFETIEHGMSILEGALAELEAGSSKTLDGELAFKLHDTYGFPLDLTADVCREREVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA      +         L+     T F GYD +        
Sbjct: 419 -VDEAAFDEAMTRQREQARAAGKFKMAQG-------LEYSGEKTTFHGYDEVVFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V++A  GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVIALYVEGASVQQASQGQQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 569 LMHKALREVLGTHVQQKGSLVDADKTRFDFAHNAPLTDEQIRRVEEIVNAEVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMSFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRIVQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++  V+ ++  +   D K L+  +D L+ K++S  I+
Sbjct: 743 KELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LASV-EGGKVSLIAGVTADASRKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|261867354|ref|YP_003255276.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412686|gb|ACX82057.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 874

 Score =  928 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/912 (42%), Positives = 554/912 (60%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FKN+F G EK  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHFGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RL++TVY+ DEEA+K+W    G+ A++IIRI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKERLWVTVYETDEEAYKIWHDEIGIVAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+F+ LI  + ++TG K       + RVI DH+RS ++LI DG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFQKLIAKTAELTGEKD--LTNKSLRVIADHIRSCAYLIVDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGAAEAFFYKLVPTLIEVMAQAGEEVKKHQATVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ +   ++L+G+VAFKLYDT+G PLD+  D+   RG+
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALAEVK-GKVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RA++ S           + ++    G T+F GY          
Sbjct: 418 T-IDEAGFEREMENQRLRAQSASQFGM------DYNNVIRVDGITRFEGYTESETL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ V+   SGQ   V+ D TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVTALFHDGKPVDTISSGQSAVVILDNTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G+G    + D QK    +F H   + +G L    S+   +D   R+++S+NHSAT
Sbjct: 508 IGRLEGNGFNFDVKDTQKYG-QVFGHIGELTQGSLSVGQSVNAVVDEVRRQRISLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++   LRFD    +PI+ A+L  +E  VN  +  N P+ 
Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDALLRFDFAQHEPISKAQLAEVERIVNQQVRANNPIK 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM  E A A GA AL G KY+D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMELEAAKAKGAMALFGEKYSDQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+E+++ AGIRRIEAITG+ A   L  Q   L   A  LK    ++  ++  + ++++K+
Sbjct: 682 VTETAVAAGIRRIEAITGETAIEWLQNQQSLLNQSAELLKSDVNSITDKISLLQDKFKKV 741

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+S++D+L+ ++ S +I
Sbjct: 742 EKELQTLKEKAALQAGNDLAQSAVKINGVSVIAQQLDGIEAKSLRSMVDSLKNQLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   +  ++K ++++ VT+DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 VFASVV-DEKVNLIVGVTQDLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPENV 859

Query: 886 DQAIAGVASFLK 897
           ++A++  + +LK
Sbjct: 860 NKALSVCSDWLK 871


>gi|152977739|ref|YP_001343368.1| alanyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|205829971|sp|A6VKD6|SYA_ACTSZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150839462|gb|ABR73433.1| alanyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 874

 Score =  928 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 541/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  K  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKYDAINFAWEFLTSPKWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+  + IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 ALPKEKLYVTVYETDDEAYDIWNKEVGVPQEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GGLP    E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGLPGTPEEDGDRYIEIWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  VLQ   +NY+ID+F+ LI+   ++ G    GN   + RVI DH+RS ++LIADG+
Sbjct: 241 ERMTAVLQHVNSNYEIDIFQTLIKKVAEIVGTTDLGNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++ + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKETFFYKLVPTLIEVMAEAGKQVKEKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL+LLD  L+++  + +L+G+VAFKLYDT+G PLD+  D+   R  
Sbjct: 359 LRLEEEQFARTLERGLILLDAELANVK-NGVLSGEVAFKLYDTYGFPLDLTADVCRERN- 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F++ +E QR RA++ S           + S+    G T+F GY  +       
Sbjct: 417 IAVDENGFDKEMEAQRLRAQSASNFGM------DYTSIIRVDGETKFEGYTNVESL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ + G+ VE   +GQ   V+ + TPFYAE GGQ+GD
Sbjct: 467 -------------------AKVTALFRDGKAVESVSAGQSAVVILENTPFYAEMGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +G+   + D QK    +F H   + +G L     +   +D Q R+   +NHSAT
Sbjct: 508 SGMLTANGLHFDVKDTQKYG-QVFGHIGELTQGTLSVGQIVNAQVDAQRRQYTKLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++  GLRFD    + +T  ++  IE  VN  I  N PV+
Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDVGLRFDFVQPEAVTKEQIMEIERLVNFHIRANHPVL 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T  M   +A + GA AL G KY + VRVV++        S  LCGG HV  TGEI LL I
Sbjct: 627 TEEMGVAEAKSKGAIALFGEKYGETVRVVTMSP-----FSIELCGGLHVERTGEIGLLKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE ++ AGIRR+EA+TG+ A + L  Q   L   A  LK    ++  ++ ++ ++ +K 
Sbjct: 682 ISEGAVAAGIRRVEAVTGEEAINWLFNQQTILAQSADLLKSDIPSLPEKIIQLQDKVKKT 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +  ++       S  KI  V+ ++H +   D+K L+ ++D L+ ++ S +I
Sbjct: 742 EKELQQLKEKAAMQAGSDLAKSAVKINGVSVVTHQLDGADAKVLRVMVDDLKNQLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            L   S   K +++  VT DL  +  A +L  + A+ + GG GGGRP MA +GG      
Sbjct: 802 ALGSAS-GGKVNLIAGVTADLTAKVKAGELVNVMAQQV-GGKGGGRPDMAMAGGSQPENL 859

Query: 886 DQAIAGVASFLK 897
             A+   + +LK
Sbjct: 860 SAALIVASDWLK 871


>gi|167582193|ref|ZP_02375067.1| alanyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 874

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 537/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+           + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G+L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELVQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 AALAGVKGWVEE 872


>gi|301169533|emb|CBW29134.1| alanyl-tRNA synthetase [Haemophilus influenzae 10810]
          Length = 874

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 548/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 TQAIKVAQDWLNK 872


>gi|295677107|ref|YP_003605631.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295436950|gb|ADG16120.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 874

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/911 (41%), Positives = 535/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAADIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTEVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 KDKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LIQA+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIQAAGRETGVTDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL QA+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRLVADLVAQMGDAYPELAQAEKRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEERFFETIEHGMSILEAALADLDAKGGKTLDGELAFKLHDTYGFPLDLTADVCREREVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKMAQG-------LEYSGAKTTFHGYEEIVFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V++  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGASVQQVQAGQPAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANASTRFAVADTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ +DA+  GA AL G KY D VRV+ +        S  LCGGTHV+ +G+I    IV
Sbjct: 629 RLMSYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVNRSGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   + ++ + A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELEARVNAAAAVLKAQPAELTQRIGQVQDQVKALE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++  V+ ++  +   D K L+  +D L+ K++S  I+
Sbjct: 743 KELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|307261112|ref|ZP_07542790.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869194|gb|EFN00993.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 874

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +     +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NE RGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNESRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASSNFG------TDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK    +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYG-QVFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S      +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 V-FGTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|145636626|ref|ZP_01792293.1| alanyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|145270152|gb|EDK10088.1| alanyl-tRNA synthetase [Haemophilus influenzae PittHH]
          Length = 874

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/913 (42%), Positives = 549/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ +  D +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALAQVK-DGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI DV+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQTGSDFVKSAVKINDVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|23016227|ref|ZP_00055985.1| COG0013: Alanyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 877

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/902 (49%), Positives = 594/902 (65%), Gaps = 36/902 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 4   MQTANEIRRTFLDFFEKNGHTVVNSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRDYVR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI+ AW+L+TK+F +
Sbjct: 64  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDQAIEHAWNLITKDFGI 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY +D++A   WKKI+GL   +IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 124 DKNRLLVTVYHDDDQAADAWKKIAGLPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 183

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG P    ++G+R+IEIWNLVFMQFEQ +K+ R  LPK SIDTGMGLER+A +LQ 
Sbjct: 184 DHIPGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKETRVPLPKPSIDTGMGLERLAALLQG 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD+DL + LI+AS + +    +G + V+HRV+ DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 244 KHDNYDVDLLRALIEASAESSNTDADGPHKVSHRVVADHLRSSSFLIADGVLPSNEGRGY 303

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G +EPL+  L+PAL  +MG AYPEL++A  LI ETL+ E+ RF 
Sbjct: 304 VLRRIMRRAMRHAHLMGCSEPLLWKLVPALTRQMGEAYPELVRANALITETLKLEETRFK 363

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLD+GL LLD  ++ +G    L G+VAFKLYDT+G PLD+ QD L A+G  G+D   F 
Sbjct: 364 VTLDKGLKLLDDEITRIGSAGKLAGEVAFKLYDTYGFPLDLTQDALKAKG-IGVDTDGFA 422

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ AR    G G   TE +WF L+EK GA++F+GYD                  
Sbjct: 423 SAMERQRAEARKAWAGSGDTATETVWFELREKLGASEFLGYD------------------ 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GD 537
                       + A+V+ G++VE    G  V V+ +QTPFY E+GGQ+GDTG     G 
Sbjct: 465 -----AEQAEGKIVALVENGKVVEAVHPGHSVAVIANQTPFYGESGGQMGDTGIITVAGG 519

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              + +TD QKK   + VH   VE G +         +D   R     +HSATHLLH  L
Sbjct: 520 KATITVTDTQKKLGDLVVHFGTVEGGPVAVGEDAHFAVDSSRRDATRGHHSATHLLHAVL 579

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV+Q GS + PD LRFD  H+K ++  E +++E  VN  I  N  V T +M  +
Sbjct: 580 RGILGDHVTQKGSQVGPDRLRFDFAHTKALSPEESRAVEAEVNRRIRVNAEVATTVMTPD 639

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DAI +GA AL G KY + VRVVS+     G  S+ LCGGTH   TG+I    IV+ES++ 
Sbjct: 640 DAIKAGAMALFGEKYGEEVRVVSM-----GDLSTELCGGTHARRTGDIGGFKIVAESAVA 694

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG    +    Q++ L   A  LK +  ++  R+  + +E RKL+   A+ 
Sbjct: 695 SGVRRIEAVTGPAFLAWAQAQEDLLARAADTLKAAPTDLPARIAGLMDERRKLERELAEV 754

Query: 778 KLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + QL     +  +   +  + +   +++ V  K+LK + D ++K+I SG+I+LV    + 
Sbjct: 755 RKQLATGGGQGAATKTVNGITYAGKVLNGVPPKDLKGMADEIKKQIGSGVIVLVS-DADG 813

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           KAS+++ VTEDL  +++AVDL R+ ++ LGG GGGGRP MAQ+GGP+ + A  A+  +  
Sbjct: 814 KASIVVCVTEDLTAKYSAVDLVRIGSEALGGKGGGGRPDMAQAGGPDASAAQAAVDKIEQ 873

Query: 895 FL 896
            L
Sbjct: 874 AL 875


>gi|68249409|ref|YP_248521.1| alanyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|81336165|sp|Q4QM86|SYA_HAEI8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68057608|gb|AAX87861.1| alanyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
          Length = 874

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 547/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE    GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEVGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|319775253|ref|YP_004137741.1| alanyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|317449844|emb|CBY86053.1| alanyl-tRNA synthetase [Haemophilus influenzae F3047]
          Length = 874

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/913 (42%), Positives = 545/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGNHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA++ S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDRKMEAQRTRAQSASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQSVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|329122821|ref|ZP_08251393.1| alanine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|327472085|gb|EGF17523.1| alanine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 874

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/913 (42%), Positives = 545/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKNDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             I+  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-INEQAFDRKMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQSVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|293390902|ref|ZP_06635236.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951436|gb|EFE01555.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 874

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/912 (42%), Positives = 555/912 (60%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FKN+F G EK  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHFGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RL++TVY+ DEEA+K+W    G++A++IIRI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKERLWVTVYETDEEAYKIWHDEIGIAAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+F+ LI  + ++TG K       + RVI DH+RS ++LI DG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFQKLIAKTAELTGEKD--LTNKSLRVIADHIRSCAYLIVDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG TE     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIEVMAQAGEEVKKHQATVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ +   ++L+G+VAFKLYDT+G PLD+  D+   RG+
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALAEVK-GKVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RA++ S           + ++    G T+F GY          
Sbjct: 418 T-IDEAGFEREMENQRLRAQSASQFGM------DYNNVIHVDGITRFEGYTESETL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ V+   +GQ   V+ D TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVTALFHDGKPVDTISAGQSAVVILDNTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G+G    + D QK    +F H   + +G L    S+   +D   R+ +S+NHSAT
Sbjct: 508 IGRLEGNGFNFDVKDTQKYG-QVFGHIGELTQGSLSVGQSVNAVVDEVRRQHISLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++   LRFD    +PI+ A+L  +E  VN  +  N P+ 
Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDALLRFDFAQHEPISKAQLAEVERIVNQQVRANNPIK 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM  E A A GA AL G KY+D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMELEAAKAKGAMALFGEKYSDQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+E+++ AGIRRIEAITG+ A   L  Q   L   A  LK    ++  ++  + ++++K+
Sbjct: 682 VTETAVAAGIRRIEAITGETAIEWLQNQQSLLNQSAELLKSDVNSITDKISLLQDKFKKV 741

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+S++D+L+ ++ S +I
Sbjct: 742 EKELQTLKEKAALQAGNDLAQSAVKINGVSVIAQQLDGIEAKSLRSMVDSLKNQLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   +  ++K ++++ VT+DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 IFASV-IDEKVNLIVGVTQDLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPENV 859

Query: 886 DQAIAGVASFLK 897
           ++A++  + +LK
Sbjct: 860 NKALSVCSDWLK 871


>gi|145634774|ref|ZP_01790482.1| alanyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145267940|gb|EDK07936.1| alanyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 874

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/913 (42%), Positives = 548/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G   G G+   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSGQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKHTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                  K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 DKELQALKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|186476371|ref|YP_001857841.1| alanyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|205830006|sp|B2JK72|SYA_BURP8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|184192830|gb|ACC70795.1| alanyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 874

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/911 (41%), Positives = 530/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + T +    NN  + +V+ DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETNIDDLSNN--SLKVVADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL  A+  +   LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAQMGGAYPELKDAEQRVTHVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+G L+ L     + L+G+VAFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEGALADLDSKGGKTLDGEVAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA      +   +            T F GY+ +        
Sbjct: 419 -VDEPAFDEAMARQREQARAAGKFKMAQGLD-------YTGAKTTFHGYEEIVFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E   GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------ARVTALYVDGASVNEVTKGQQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      IR  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANASIRFGVVDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 569 LMHKALREVLGGHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV+ TG+I L  IV
Sbjct: 629 RVMAYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVNRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+  + ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRFVQELDARIHAAAAALKAQPSELTQRISMVQDQVKALE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L              ++ V  ++  +   D K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELASQAIDVSGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LASV-EGGKVSLIAGVTADTSKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|294012144|ref|YP_003545604.1| alanyl-tRNA synthetase [Sphingobium japonicum UT26S]
 gi|292675474|dbj|BAI96992.1| alanyl-tRNA synthetase [Sphingobium japonicum UT26S]
          Length = 884

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/904 (48%), Positives = 593/904 (65%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F  NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSTNDIRRSFLDYFGANGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLESRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTKE+ L
Sbjct: 61  ATSSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LWKKI+GL  ++IIRI T DNFW+M ++GPCGPCSEIF+D G
Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPEERIIRIPTKDNFWAMGDSGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ+  +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D F+ LI+ S  +T    EG    +HRVI DHLRS+SFLIADG+LPANEGRGY
Sbjct: 241 VHDNYDTDTFRALIEESGALTKTATEGEFKASHRVIADHLRSTSFLIADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  EPLM  L+ +L +EMG AY EL++A+ LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHIIGAKEPLMHRLVGSLVSEMGGAYQELVRAQPLIEETLLREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LLD     L +   L G+ AFKLYDT+G P D+ +D L +RGL G+D   F+
Sbjct: 361 QTLEKGLKLLDEATGDLSEGGTLPGETAFKLYDTYGFPYDLTEDALRSRGL-GVDREGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ++ ARA   G G   +++IWF + EK G T+FIGY    G              
Sbjct: 420 KAMAEQKAAARAAWKGSGEKASDEIWFDIAEKTGNTEFIGYSSTEG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V AIV+ G   + A +G+ V +V +QTPFY E+GGQ+GD G       
Sbjct: 466 ---------EGEVVAIVKDGVNFDSAAAGETVLIVTNQTPFYGESGGQMGDAGTISSQSG 516

Query: 540 RL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  + D  K    +  H A +  G ++   ++ L++D   R ++  NHSATHLLH AL 
Sbjct: 517 LVADVEDTAKPLGRLHAHRAKIGAGSVKVGDTVHLSVDVNRRDRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS + PD LRFD +H + +T  ++ +IE +VN+ +  N  V TR+M  +D
Sbjct: 577 NRLGAHVTQKGSLVAPDRLRFDFSHPEALTHGQIAAIEADVNEQVRHNEAVTTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA AL G KY D VRV+S+   D   +S  LCGGTHV +TG+I +  I+SES++ +
Sbjct: 637 AIQAGAMALFGEKYGDEVRVLSMGKGDAHSYSVELCGGTHVRATGDIAIFKIISESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ AR  L  ++++L+  A+ LK +   V  R+  + E+ RKL+   A+ K
Sbjct: 697 GVRRIEALTGEAARLWLSDREDRLRQSAAALKTTPEEVPARIAALVEQSRKLERELAEAK 756

Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             L +            KI  VNF+  +I  +D KEL+ ++D  +  + SG+  ++ +  
Sbjct: 757 KALALGGGGSAQAAGPEKIGAVNFIGQVIEGLDPKELRGLVDQNKATLGSGVSAILAVV- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + +A++ + VT+DL+   +AVDL R   + LGG GGGGRP MAQ GGP+G+KA+ A+  V
Sbjct: 816 DGRATIAVGVTDDLVGSISAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGDKAEAALEAV 875

Query: 893 ASFL 896
            + L
Sbjct: 876 KAAL 879


>gi|330428621|gb|AEC19955.1| alanyl-tRNA synthetase [Pusillimonas sp. T7-7]
          Length = 873

 Score =  926 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/911 (43%), Positives = 542/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH+++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y   
Sbjct: 1   MKTSEIRQKFLSFFESKGHQVVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  + L 
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQNAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ A++I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEIGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQFE+       +LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPLLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P+
Sbjct: 241 AAVLQHVHSNYEIDLFQSLIKAAARETGISDLANN--SLKVIADHIRACSFLIVDGVIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG +      L+  L  EMG AYPEL+  +  IE+ L+ 
Sbjct: 299 NEGRGYVLRRIVRRALRHGHKLGQSGVFFHRLVKDLVAEMGQAYPELVAQQARIEQVLKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +TL+ G+ +LD  L+ + +  +L+G   F LYDT+G P+D+  DI   R    +
Sbjct: 359 EEERFSETLENGMKILDAALAAVPEKGMLDGQTLFTLYDTYGFPVDLTADICRER-EVQV 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F  A+  QR +ARA      +         L      T+F GYD L+         
Sbjct: 418 DMDGFEVAMNHQREQARAAGKFKAAEG-------LSYSGVETRFDGYDQLQS-------- 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+   G  VE   +GQ+  VV D TPFYAE+GGQ+GD G 
Sbjct: 463 ---------------QGTVTALYIDGTQVESVSAGQQAIVVLDATPFYAESGGQVGDAGI 507

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +G R  + D QK    +F HH  +  G+L    ++   +D   R +   NHSATHL+
Sbjct: 508 LQANGARFAVADTQKIQNSVFGHHGEMLEGVLAVGDTVDAQVDKARRARTVRNHSATHLM 567

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     ++
Sbjct: 568 HKALRQVLGSHVQQRGSLVDPDKTRFDFAHDAPMTADQIAQVERIVNAEVLNNHATQAQL 627

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ +DA+  GA AL G KY D VRV+ +        S  LCGGTHV+ TG+I L  IVSE
Sbjct: 628 MSYDDAVQGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVARTGDIGLFKIVSE 681

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RR+EAITG  A + +   ++ L   A  LK    ++V RV  +  + + L+  
Sbjct: 682 GGVAAGVRRVEAITGDNAVAWVQQINDTLVQAAGLLKTQPADLVERVALMQTQAKALERD 741

Query: 774 HAKRKLQLNVE---DLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             + K +L      DL+   I    D   +   +S VD K L+ ++D L+ K++S +++L
Sbjct: 742 LDRLKSKLAASAGNDLASQAIVLRGDAKLLVASLSGVDPKALRGMIDQLKDKLKSAVVLL 801

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K S+   VT DL  +  A DL  + A  + GG GGGRP MA  GG +      
Sbjct: 802 AAVA-DDKISLAAGVTGDLASQVKAGDLVGMVAAQV-GGKGGGRPDMAMGGGTDVGALPA 859

Query: 888 AIAGVASFLKK 898
           A AGV +++++
Sbjct: 860 ATAGVEAWVRE 870


>gi|134282822|ref|ZP_01769525.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|134245908|gb|EBA45999.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 305]
          Length = 874

 Score =  926 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 538/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDR 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|53719621|ref|YP_108607.1| alanyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|76812235|ref|YP_333216.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121601160|ref|YP_992755.1| alanyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124386422|ref|YP_001026453.1| alanyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126449388|ref|YP_001080272.1| alanyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|126451905|ref|YP_001065931.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|167001586|ref|ZP_02267381.1| alanine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|167738941|ref|ZP_02411715.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 14]
 gi|167816161|ref|ZP_02447841.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167824533|ref|ZP_02456004.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|167846068|ref|ZP_02471576.1| alanyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167894639|ref|ZP_02482041.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 7894]
 gi|167903047|ref|ZP_02490252.1| alanyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|167911280|ref|ZP_02498371.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|167919300|ref|ZP_02506391.1| alanyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217423601|ref|ZP_03455102.1| alanine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|226192959|ref|ZP_03788571.1| alanine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|242315165|ref|ZP_04814181.1| alanine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|254180068|ref|ZP_04886667.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|254188523|ref|ZP_04895034.1| alanyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254198350|ref|ZP_04904772.1| alanyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|254261778|ref|ZP_04952832.1| alanine--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|254297905|ref|ZP_04965358.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|254358720|ref|ZP_04974993.1| alanyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|59798504|sp|Q63TF9|SYA_BURPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123599400|sp|Q3JT87|SYA_BURP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830001|sp|A3MJ36|SYA_BURM7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830002|sp|A2S3D4|SYA_BURM9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830003|sp|A1V3F2|SYA_BURMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830004|sp|A3NUB0|SYA_BURP0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52210035|emb|CAH36008.1| alanyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|76581688|gb|ABA51163.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121229970|gb|ABM52488.1| alanyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124294442|gb|ABN03711.1| alanine--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126225547|gb|ABN89087.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|126242258|gb|ABO05351.1| alanine--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|148027847|gb|EDK85868.1| alanyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|157807006|gb|EDO84176.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157936202|gb|EDO91872.1| alanyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|169655091|gb|EDS87784.1| alanyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|184210608|gb|EDU07651.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|217393459|gb|EEC33480.1| alanine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|225935049|gb|EEH31024.1| alanine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|242138404|gb|EES24806.1| alanine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|243062691|gb|EES44877.1| alanine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254220467|gb|EET09851.1| alanine--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 874

 Score =  926 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 538/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|154253021|ref|YP_001413845.1| alanyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
 gi|154156971|gb|ABS64188.1| alanyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 913

 Score =  926 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/911 (48%), Positives = 604/911 (66%), Gaps = 37/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+ +LEFF+  GHE++ S  L+P NDPTL+FTN+GMVPFKN+FTGQE   Y+ 
Sbjct: 22  MAGVNEIRSKYLEFFRAQGHEVVASGPLVPNNDPTLLFTNAGMVPFKNVFTGQETRPYKR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG Y+K  AI+ AWDL+TKE  L
Sbjct: 82  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYYKAEAIEFAWDLITKELAL 141

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +T+Y++D+EA  LWKKI+GLS DKI+R+    NFW M +TGPCGP SEIF+D G
Sbjct: 142 PESRLMVTIYEDDDEAHGLWKKITGLSDDKIVRLGAKSNFWQMGDTGPCGPNSEIFYDHG 201

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG P    E+G+R+IEIWNLVFMQ+EQ     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 202 DKIPGGPPGSPDEDGDRFIEIWNLVFMQYEQHEDGSRTRLPKPSIDTGMGLERIAAVLQG 261

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI AS + +    +G + V+HRVI DHLRSSSFL+ADG++P+NEGRGY
Sbjct: 262 THDNYSTDLMRSLIVASAEASKSDPDGPHAVSHRVIADHLRSSSFLLADGVMPSNEGRGY 321

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+L+G  EPLM  L+PAL  +MG AYPEL +A+ L+ ETLR E+ RF 
Sbjct: 322 VLRRIMRRAMRHAQLVGVAEPLMWRLVPALVRQMGDAYPELRRAEALVTETLRLEETRFR 381

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LLD  +  LG   +L G+VAFKLYDT+G PLD+ QD L +RG++ +D   F+
Sbjct: 382 ETLTRGLKLLDEEIESLGGKGVLAGEVAFKLYDTYGFPLDLTQDALRSRGMS-VDQTGFD 440

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ +QR  ARA   G G   TE +WF L++K GAT+F+GY+                  
Sbjct: 441 EAMAKQRQDARAAWSGSGEKATEAVWFELRDKVGATEFLGYE------------------ 482

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                +      V A++  G+ V++  +G    ++ +QTPFYAE+GGQ+GDTG       
Sbjct: 483 -----SEIAEGKVVALLVDGQPVDKVEAGTDAALITNQTPFYAESGGQVGDTGIVFSADG 537

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D  KK   + VH   + RG L+    + + +D   R     NHSATHLLH AL 
Sbjct: 538 AEFPVIDTMKKLGALHVHIGKLARGTLKLGDIVEMKVDKSLRDATRANHSATHLLHEALR 597

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + P+ LRFD +H KP+T  E+  +E  VN +I QN  V TR+M  ED
Sbjct: 598 RVLGDHVTQKGSMVGPERLRFDFSHPKPMTPEEISEVETIVNRVIRQNAEVTTRLMTPED 657

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AIA+GA AL G KY + VRV+++  +D    G +S  LCGGTHV   G+I +  IVSES+
Sbjct: 658 AIAAGALALFGEKYGEEVRVLAMGLDDENPNGTYSVELCGGTHVRRVGDIAIFKIVSESA 717

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +GIRRIEA+TG+ AR++L+ QD   K  AS L++S  ++  RV  + EE ++L+   A
Sbjct: 718 VASGIRRIEALTGEGARAYLVAQDRIAKEAASALRISTEDLPARVVSLMEERKRLERELA 777

Query: 776 KRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           + K QL +        ++    +   V  ++  +  V+ K+L+ ++D  +K++ SG+++L
Sbjct: 778 QAKKQLAMSGGGGSGGQESPVQEFGGVKLIARKLEGVNPKDLRGLIDESKKQLGSGVVVL 837

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           V IS++ K ++ + VT+DL  R+NAV+L +  A  +GG GGGGRP MAQ+GGP   KAD 
Sbjct: 838 VAISEDGKGAIAVGVTDDLTSRYNAVELVKAGAAAMGGKGGGGRPDMAQAGGPEAEKADA 897

Query: 888 AIAGVASFLKK 898
           A+  V + + +
Sbjct: 898 ALDAVKAAVGE 908


>gi|205830263|sp|A7HWA5|SYA_PARL1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 892

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/911 (48%), Positives = 604/911 (66%), Gaps = 37/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+ +LEFF+  GHE++ S  L+P NDPTL+FTN+GMVPFKN+FTGQE   Y+ 
Sbjct: 1   MAGVNEIRSKYLEFFRAQGHEVVASGPLVPNNDPTLLFTNAGMVPFKNVFTGQETRPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG Y+K  AI+ AWDL+TKE  L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYYKAEAIEFAWDLITKELAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +T+Y++D+EA  LWKKI+GLS DKI+R+    NFW M +TGPCGP SEIF+D G
Sbjct: 121 PESRLMVTIYEDDDEAHGLWKKITGLSDDKIVRLGAKSNFWQMGDTGPCGPNSEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG P    E+G+R+IEIWNLVFMQ+EQ     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DKIPGGPPGSPDEDGDRFIEIWNLVFMQYEQHEDGSRTRLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI AS + +    +G + V+HRVI DHLRSSSFL+ADG++P+NEGRGY
Sbjct: 241 THDNYSTDLMRSLIVASAEASKSDPDGPHAVSHRVIADHLRSSSFLLADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+L+G  EPLM  L+PAL  +MG AYPEL +A+ L+ ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLVGVAEPLMWRLVPALVRQMGDAYPELRRAEALVTETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LLD  +  LG   +L G+VAFKLYDT+G PLD+ QD L +RG++ +D   F+
Sbjct: 361 ETLTRGLKLLDEEIESLGGKGVLAGEVAFKLYDTYGFPLDLTQDALRSRGMS-VDQTGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ +QR  ARA   G G   TE +WF L++K GAT+F+GY+                  
Sbjct: 420 EAMAKQRQDARAAWSGSGEKATEAVWFELRDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                +      V A++  G+ V++  +G    ++ +QTPFYAE+GGQ+GDTG       
Sbjct: 462 -----SEIAEGKVVALLVDGQPVDKVEAGTDAALITNQTPFYAESGGQVGDTGIVFSADG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D  KK   + VH   + RG L+    + + +D   R     NHSATHLLH AL 
Sbjct: 517 AEFPVIDTMKKLGALHVHIGKLARGTLKLGDIVEMKVDKSLRDATRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + P+ LRFD +H KP+T  E+  +E  VN +I QN  V TR+M  ED
Sbjct: 577 RVLGDHVTQKGSMVGPERLRFDFSHPKPMTPEEISEVETIVNRVIRQNAEVTTRLMTPED 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AIA+GA AL G KY + VRV+++  +D    G +S  LCGGTHV   G+I +  IVSES+
Sbjct: 637 AIAAGALALFGEKYGEEVRVLAMGLDDENPNGTYSVELCGGTHVRRVGDIAIFKIVSESA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +GIRRIEA+TG+ AR++L+ QD   K  AS L++S  ++  RV  + EE ++L+   A
Sbjct: 697 VASGIRRIEALTGEGARAYLVAQDRIAKEAASALRISTEDLPARVVSLMEERKRLERELA 756

Query: 776 KRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           + K QL +        ++    +   V  ++  +  V+ K+L+ ++D  +K++ SG+++L
Sbjct: 757 QAKKQLAMSGGGGSGGQESPVQEFGGVKLIARKLEGVNPKDLRGLIDESKKQLGSGVVVL 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           V IS++ K ++ + VT+DL  R+NAV+L +  A  +GG GGGGRP MAQ+GGP   KAD 
Sbjct: 817 VAISEDGKGAIAVGVTDDLTSRYNAVELVKAGAAAMGGKGGGGRPDMAQAGGPEAEKADA 876

Query: 888 AIAGVASFLKK 898
           A+  V + + +
Sbjct: 877 ALDAVKAAVGE 887


>gi|163759600|ref|ZP_02166685.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162283197|gb|EDQ33483.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 884

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/895 (53%), Positives = 628/895 (70%), Gaps = 35/895 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KN HE++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNEIRSAFLDYFKKNEHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRPYTT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI+LAW+LLT+EF +
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIELAWNLLTREFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ RL +TVY  D++AF LW+KI+G+   +IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 NKERLLVTVYHTDDDAFDLWRKIAGVPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ    ER  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQLTVDERVDLPRPSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLF+ LI ASE++TG+  EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLFRRLIMASEELTGVSAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLMYKLLPTLVAEMGRAYPELTRAEALISETLKLEETRFS 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD   + LG+ + L G+ AFKLYDT+G PLD+ QD L  RG   +D   F 
Sbjct: 361 KTLERGLSLLDEASADLGEGDRLGGETAFKLYDTYGFPLDLTQDALRQRG-IEVDTDGFK 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARAH  G G   TE +W+ +K++ GAT F+GYD                  
Sbjct: 420 AAMERQKAEARAHWSGSGDKATETVWYEIKDRVGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++A+V+ G  V  A +G+ V+VV +QTPFY E+GGQ+GD G   G+G 
Sbjct: 462 -----TEIAEGVIQAMVRDGAEVAAAKAGESVDVVVNQTPFYGESGGQMGDQGIISGEGY 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           RL+++D QK+ EG+FVH A+V  G ++      L + +  R ++  NHSATHLLH AL  
Sbjct: 517 RLEVSDTQKRGEGLFVHRAVVAEGEVKAGAVAQLDVAHSRRAKIRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T+ EL  +E   N+II QN PV TR+M  +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELSEVETMANEIILQNSPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     GV     +S  LCGGTHV++TGEI L+ ++S+S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGVRGVKANRPYSVELCGGTHVAATGEIGLVRVLSDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR HL  QDEKL+  AS LKV  G+VV R+E + +E +K++   
Sbjct: 697 AVSAGVRRIEAVTGEAARQHLSEQDEKLRQAASLLKVQPGDVVSRIEALMDERKKMEREL 756

Query: 775 AKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + +                 I  V F+  +++ V  K+LK ++DA +  + SG+   V 
Sbjct: 757 TEARKKLALGGGGAGGDESRDIGGVKFLGKVVNGVQPKDLKGLVDAAKTSLGSGVAAFVA 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           IS++ KASV++ VTEDL  + +AVDL R++++ +GG GGGGRP MAQ+GGP+G K
Sbjct: 817 ISEDGKASVVVGVTEDLTSKLSAVDLVRVASQAIGGKGGGGRPDMAQAGGPDGAK 871


>gi|260579906|ref|ZP_05847736.1| alanyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|260093190|gb|EEW77123.1| alanyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 874

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/913 (42%), Positives = 546/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDRKMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQSVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQLENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 TQAIKVAQDWLNK 872


>gi|90412109|ref|ZP_01220116.1| alanyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90327087|gb|EAS43466.1| alanyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 873

 Score =  925 bits (2390), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/910 (41%), Positives = 531/910 (58%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           Q RL +T+Y+ D+EAF +W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 QDRLLVTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG P    E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+
Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ S +V G  YE  +  + RV+ DH+RS +FLI DG++P+
Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG T      L   L   MG+A  EL + + L+E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGATGAFFYKLAGPLAEIMGTAGEELKKQQALVEKVLKI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++ FG+TLDRGL +L+  L +L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 361 EEDNFGRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN A+E QR RAR        G     +    +    T+F GY             
Sbjct: 419 DEEGFNNAMEAQRQRAREA------GKFGVDYNESIKVDVNTEFCGYT------------ 460

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S + A+ + GE V+  ++G+   ++ D TPFYAE+GGQ GD G 
Sbjct: 461 -----------GTAAQSRIIALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGV 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     +TD QK       H   + +G L     L   +D   R  +++NHSATHLL
Sbjct: 510 LTAESTMFNVTDTQKFGA-AIGHQGSLVQGALNIGDKLEAQVDVARRAAITLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  D LRFD ++ + +   +L+ IE  VN+ I  N  + T I
Sbjct: 569 HSALRNLLGEHVAQKGSLVKADALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H  +TG+I L  I SE
Sbjct: 629 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG  A   L  Q+  L   AS +K    +V  +V  +    ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKD 743

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + + +L  ++ +       +I  V  +   +   D+K L+ ++D ++ K+ SGI++L 
Sbjct: 744 IQQLQDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLG 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S + K  +++ VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A
Sbjct: 804 NVSGD-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAA 861

Query: 889 IAGVASFLKK 898
           +  V  +L +
Sbjct: 862 LESVTPWLTE 871


>gi|237811944|ref|YP_002896395.1| alanine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|237502943|gb|ACQ95261.1| alanine--tRNA ligase [Burkholderia pseudomallei MSHR346]
          Length = 874

 Score =  925 bits (2390), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 538/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDR 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSRLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|126441822|ref|YP_001058678.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|205830005|sp|A3N8K7|SYA_BURP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126221315|gb|ABN84821.1| alanine--tRNA ligase [Burkholderia pseudomallei 668]
          Length = 874

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 538/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSRLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|167719939|ref|ZP_02403175.1| alanyl-tRNA synthetase [Burkholderia pseudomallei DM98]
          Length = 874

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 538/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYGIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|294634755|ref|ZP_06713284.1| alanine--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291091814|gb|EFE24375.1| alanine--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 875

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/910 (42%), Positives = 562/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+F+   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTGAQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L Q +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPQEKLWVTVYESDDEAYNIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG P    E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI  + +V G+     +  + RVI DH+RS +FL++DG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIAETARVIGVDD--LSSKSLRVIADHIRSCAFLVSDGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGHMLGAKESFFYKLVAPLIQVMGSAADELARQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G PLD+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDDELAQLD-GDTLDGETAFRLYDTYGFPLDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D + F +A+E QR RAR       S      + SL    G+T F GY   +       
Sbjct: 420 -VDEVGFEKAMEAQRRRARE------SSGFGADYNSLIRVEGSTDFTGYQRQQQM----- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ + G+ V+   +G++  VV DQTPFYAE+GGQ+GD 
Sbjct: 468 ------------------ATITALFRNGQAVDALQAGEEGVVVLDQTPFYAESGGQVGDR 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   + D QK  +    H   V +G L+   SL  +ID   R ++ ++HSATH
Sbjct: 510 GELSASGVSFVVDDTQKYGQ-AIGHLGKVVQGHLQVGASLQASIDVARRDRIRLSHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL ++LG+HV+Q GS +    LRFD +H + +   +++ +E+ VN  I +NLP+ T
Sbjct: 569 LMHAALRSVLGTHVAQKGSLVNDGYLRFDFSHPEAMKPQQIRQVEEIVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M  E+A A GA AL G KY+ +VRV+S+     G  S+ LCGGTH   TG+I L  IV
Sbjct: 629 QEMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GEFSTELCGGTHAERTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG++A   +  + + L+  AS +K    +V  ++  + E+ R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEQALQAMHQESDMLREAASLVKGDTQSVAEKIRGLMEKSRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         ++  V  +   +  V+ K L++++D L+ ++ S I++
Sbjct: 744 KALQQLKDQQAAQESASLSAQAVEVNGVKLLVSQLHGVEPKMLRTMVDDLKNQMGSCIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   ++E K S++  V++DL  +  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LA-TAEEGKVSLIAGVSKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGSDVAALP 861

Query: 887 QAIAGVASFL 896
           QA+A V+ ++
Sbjct: 862 QALASVSDWV 871


>gi|290476264|ref|YP_003469168.1| alanyl-tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289175601|emb|CBJ82404.1| alanyl-tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 887

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/910 (42%), Positives = 552/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 15  KSTAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRPYSRA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT  + F+
Sbjct: 75  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGKEWFN 134

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 135 LPKEKLWVTVYETDDEAYDIWHKEVGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 194

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLE
Sbjct: 195 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHVDGTMEPLPKPSVDTGMGLE 254

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NYDIDLF  LI +  +VTG         + RVI DH+RS +FL+ DG++
Sbjct: 255 RLTAVLQHVNSNYDIDLFCDLIASVAEVTGATD--LTNKSLRVIADHIRSCAFLVCDGVV 312

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + + L+E+ L
Sbjct: 313 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVAPLIKIMGSAGDELKRQQSLVEQVL 372

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L  L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 373 KTEEEQFARTLERGLQLLDEELEKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 431

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D + F+ A+E QR RAR       S      +    +  G + F GY+          
Sbjct: 432 -VDEVGFDVAMENQRRRARE------SSGFGTDYNEQIKVDGRSDFSGYEH--------- 475

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   + V AI + GE +++  +G++  V+ D+T FYAE+GGQ+GDT
Sbjct: 476 --------------NSQQATVMAIFRHGEAIDQIHAGEEAIVILDKTAFYAESGGQVGDT 521

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++TD QK       H   +  G L    ++   I+   R  + +NHSATH
Sbjct: 522 GNLSNGNGIFEVTDTQKYG-QAIGHIGKLINGTLNVNNTINAEINRVRRDSIRLNHSATH 580

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HVSQ GS +    LRFD +H + +   +++ +E+ VN+ I +NL +VT
Sbjct: 581 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKLEQIRQVENLVNEEIRKNLSIVT 640

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  E+A   GA AL G KY+++VRV+S+     G  S+ LCGGTH S TG+I L  I 
Sbjct: 641 ELMELEEAKTKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIS 695

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEAITGQ A + +  Q + L+ +A  +K    ++  +V+   +  ++L+
Sbjct: 696 SESGTAAGIRRIEAITGQTALNSVYQQTDLLQDIAHLVKSDISSLNEKVKTTLDRTKQLE 755

Query: 772 LIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K Q   ++ S       +I  V  +   + + + K L++++D L+ ++ S II+
Sbjct: 756 KELQHLKSQQAAQESSSLANQTKEIQGVRLLVTQLGDTEPKMLRTMVDELKNQLGSAIIV 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K ++++ +T+DL  R  A DL    A+ + GG GGGRP +AQ+GG +     
Sbjct: 816 LSTVTGD-KVTLIVGITKDLTARIKAGDLISFVAQQV-GGKGGGRPDLAQAGGTDVAALP 873

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 874 SALASVEEWV 883


>gi|254489976|ref|ZP_05103171.1| alanyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224465061|gb|EEF81315.1| alanyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 858

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/893 (44%), Positives = 535/893 (59%), Gaps = 47/893 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            FL+FF   GHE++ SS L+P NDPTL+FTN+GMV FK  F GQE   Y    T Q+CVR
Sbjct: 1   MFLDFFASKGHEVVASSPLVPANDPTLLFTNAGMVQFKETFLGQETRKYTRAVTTQRCVR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
           AGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   L   +L+ITV
Sbjct: 61  AGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTETLALPPEKLWITV 120

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP- 188
           ++ED+EA  +W K  G+SAD+  RI   DNFWSM +TGPCGPCSEIF+D GE I GG P 
Sbjct: 121 FEEDDEAADIWLKEIGVSADRFSRIGAKDNFWSMGDTGPCGPCSEIFYDHGEDIAGGPPG 180

Query: 189 GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248
              E+G+RYIEIWNLVFMQF++        LPK S+DTGMGLER+A VLQ   NNY+IDL
Sbjct: 181 TPEEDGDRYIEIWNLVFMQFDRSADGTLTPLPKPSVDTGMGLERLAAVLQHVHNNYEIDL 240

Query: 249 FKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           F+HLI+A + ++G +   ++  + RVI DH+RS SF+IADG+ P+NEGRGYVLRRI+RRA
Sbjct: 241 FQHLIEAIQALSGTED--SSNFSLRVIADHIRSCSFMIADGVHPSNEGRGYVLRRIIRRA 298

Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368
           + +   LG  E     L+  L  EMG A+PEL QA+ L+E+ L  E+ RF  TLD GL +
Sbjct: 299 IRHGHKLGLKEAFFHKLVQPLVNEMGDAFPELKQAQALVEKALLQEENRFADTLDNGLRI 358

Query: 369 LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSR 428
           LD  +  +G  EI  G+  F LYDT+G P+D+  DI   RGL  IDI  F +A+E QR+R
Sbjct: 359 LDQAIEDMGDKEI-PGETVFLLYDTYGFPIDLTADIARERGLT-IDIAGFERAMEAQRTR 416

Query: 429 ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
           AR+ S   G  + +          G T F GY   +                        
Sbjct: 417 ARSASQFAGGLSEQ------IAIDGETAFCGYSQTQ-----------------------E 447

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
           +  + AI+  GE V++  +GQ+  +V D TPFYAE+GGQ+GD G    D     ++D +K
Sbjct: 448 TGTITAIIADGEHVDQLEAGQEGVLVLDHTPFYAESGGQVGDHGEITSDNASFTVSDTRK 507

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           + +  F H    E G      S+   ID  NR+  ++NHSATHLLH AL  +LG HV Q 
Sbjct: 508 QGK-AFTHIGRCEHGQFHVGQSVTAQIDESNRQATALNHSATHLLHAALRNVLGDHVMQK 566

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           GS + P  LRFD +H +P+T  +L  IE  VN  I  N PV T++M  E+A  SGA AL 
Sbjct: 567 GSLVDPQRLRFDFSHFEPVTPDQLHDIERMVNQQIRLNHPVDTKLMAIEEAKKSGAMALF 626

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G KY+D VRV+S+     G  S  LCGGTHV  TG+I LL I +E+ I +G+RRIEA+TG
Sbjct: 627 GEKYDDEVRVLSM-----GDFSIELCGGTHVQHTGDIGLLKITAEAGIASGVRRIEAVTG 681

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-- 786
            +A  ++      L  ++  LK    NV  +   + +  R+L+      K +L       
Sbjct: 682 DKALDYIDTTQSTLNQVSDLLKAKPDNVQDKAALLVQRSRELEKELESLKAKLASSAGDD 741

Query: 787 ---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              S  +I  +  ++  +   D K L+  +D L+ K+ +  I+L  + K++K +++  VT
Sbjct: 742 LANSVQEINGIKVLASSLEGADGKALREAVDQLKNKLGTAAIVLTAV-KDEKITIIAGVT 800

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +D+ D+  A DL    A  + GG GGGRP MAQ GG        A+A V  ++
Sbjct: 801 KDITDKIRAGDLVGHVASQV-GGKGGGRPDMAQGGGNEPQNLAAALASVTDWV 852


>gi|77359489|ref|YP_339064.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|123589570|sp|Q3ILF3|SYA_PSEHT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|76874400|emb|CAI85621.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 868

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/900 (43%), Positives = 537/900 (59%), Gaps = 48/900 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF    H+++PSSSLIP ND TL+F N+GMV FK++F G E   Y   
Sbjct: 4   MTTAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+E  L 
Sbjct: 64  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWQFLTEEVKLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L +T+Y +DEEAF  W    GL AD+IIRI T DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 124 KEKLLVTIYHDDEEAFNYWSNDIGLPADRIIRIATADNFWSMGDTGPCGPCSEIFYDHGE 183

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS  E+G+R+IEIWNLVFMQ+ +QN      LPK S+DTGMGLER+A +LQ  
Sbjct: 184 HIWGGPPGSPEEDGDRFIEIWNLVFMQYNRQNDGTMLPLPKQSVDTGMGLERIAAILQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLFK LI A+  VT  +    +  + RV+ DH+RS +FLI+DG++P+NEGRGYV
Sbjct: 244 HSNYEIDLFKGLIAAAASVTNAQDM--DDKSLRVVADHIRSCAFLISDGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL  +MG AYPEL + + +IE+ LR E+E+FGK
Sbjct: 302 LRRIIRRAVRHGNKLGAQGAFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGK 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L+  LS L   +++ GD+ FKLYDT+G P D+  D+   R +  ID   F +
Sbjct: 362 TLERGLAILEESLSDLK-GDVIPGDLVFKLYDTYGFPADLTADVARERQMT-IDNKGFEE 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +  QR  A+        G     +    +    T + GY                    
Sbjct: 420 CMAVQRKTAQQA------GKFGADYNDQLKSDKQTTYKGYTTTSH--------------- 458

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S+ V  +    E V     GQK  V+ D+TPFYAE+GGQ+GDTG     G  
Sbjct: 459 --------SATVVEVFAGSESVSLLEDGQKGIVILDRTPFYAESGGQVGDTGVISVAGGE 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +T+  K        H  + +G +     +  TID   R ++  NH+ATH+LH  L  +
Sbjct: 511 FTVTNTTKLGNAF--AHHGIVQGRIGLNDKVEATIDDARRERIKKNHTATHILHETLRQL 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS +  + LRFD +H + +T  EL+ IE  VND I  N  + T +M  +DA 
Sbjct: 569 LGEHVGQKGSLVQAERLRFDFSHFEAVTKEELREIERVVNDEIRCNFALSTELMAIDDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY+D VRVV++     G +S  LCGGTHV   G+I L  IVSES I AG+
Sbjct: 629 AKGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A +++  Q++KL  +A+ +K    +V+ +V  + ++ ++L+   A+   +
Sbjct: 684 RRIEAVTGADAIAYVSEQEQKLNDVAAVVKADSASVLEKVTALLDKSKQLEKQIAQLNDK 743

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S  +I  +  +   +   +SK L+ ++D L+ KI SG+I L G++ + K
Sbjct: 744 LASAAGASLLDSVVEINGIKLLIANVKGTESKALRGMVDDLKNKIGSGVIAL-GVASDDK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  R  A +L    A  + GG GGGRP MAQ+GG        A+  V ++
Sbjct: 803 VSLIAGVTKDLTGRVKAGELVNHMASQV-GGKGGGRPDMAQAGGSEPENLTAALDSVTAW 861


>gi|212709394|ref|ZP_03317522.1| hypothetical protein PROVALCAL_00430 [Providencia alcalifaciens DSM
           30120]
 gi|212688306|gb|EEB47834.1| hypothetical protein PROVALCAL_00430 [Providencia alcalifaciens DSM
           30120]
          Length = 875

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/910 (42%), Positives = 549/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY  D+EAF +W K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYATDDEAFDIWNKEIGVPVERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+ID+F+ LI A+ + TG      +  + RVI DH+RS +FL++DG++
Sbjct: 243 RISAVLQHVNSNYEIDIFRELIAAAAEATGATD--LSNKSLRVIADHIRSCAFLVSDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL + + L+E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKETFFYKLVSTLIKVMGPAAEELQRQQALVEKVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L G+ AF+LYDT+G PLD+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDEELASLK-GDTLEGETAFRLYDTYGFPLDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E+QR RAR       S      + +L +    ++F GY           
Sbjct: 420 -VDEAGFERAMEDQRRRARE------SSGFGADYNALIKVDKRSEFSGYQHDEQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ + G+ V+   +G +  V+ D+T FYAE+GGQ+GDT
Sbjct: 467 -----------------QATIIALYKDGQPVDSLHTGDEGLVILDKTAFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D  +  +TD QK       H   VE G L     +   ++ + R  + +NHSATH
Sbjct: 510 GVLTNDSAQFTVTDTQKYG-QAIGHVGKVESGSLVVNHRIAAIVNSERRNAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +H + +T  +L+ +ED VN  I QN  + T
Sbjct: 569 LLHAALRQVLGEHVSQKGSLVNDKYLRFDFSHFEAMTQQQLRQVEDIVNAQIRQNSEIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY +RVRV+S+     G  S  LCGGTH S TG+I L  I+
Sbjct: 629 ELMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHASRTGDIGLFSIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG  A  HL  Q E+L ++A  LK    ++V +V+   ++ R L+
Sbjct: 684 SESGTAAGVRRIEATTGAAAMEHLHAQSEQLSAIAHLLKGDVNSLVEKVKAALDKSRNLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  +  +   +S+ D K L++++D L+ +++S II+
Sbjct: 744 KEILQLKDQQASQESASLSSKAKDVKGIKLLVSQLSDTDPKLLRTMVDDLKNQLKSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   +   K S+++ VT DL  +  A DL    A+ + GG GGGRP MA +GG + +   
Sbjct: 804 L-STTSGDKVSIIVGVTNDLTAKIKAGDLVSYVAQQV-GGKGGGRPDMAMAGGTDVSALP 861

Query: 887 QAIAGVASFL 896
            A+  V  ++
Sbjct: 862 TAMESVEQWV 871


>gi|187924800|ref|YP_001896442.1| alanyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|205830007|sp|B2SZN0|SYA_BURPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187715994|gb|ACD17218.1| alanyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 874

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/911 (41%), Positives = 534/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+ GPCGPCSE
Sbjct: 121 KDKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADVGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFSRDAQGNMTPLPKQCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAGRETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  +MG AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGDAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEERFFETIEHGMSILESALADLEAKGGKTLDGELAFKLHDTYGFPLDLTADVCREREVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEAAFDEAMARQREQARAAGKFKMAQG-------LEYSGAKTTFHGYEEIVFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V+E   G++  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVIALYVDGASVKEVRDGRQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++  V+ ++  +   D K L+  +D L+ K++S  I+
Sbjct: 743 KELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|329296669|ref|ZP_08254005.1| alanyl-tRNA synthetase [Plautia stali symbiont]
          Length = 875

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 546/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GMV FK++F GQ+K  Y   
Sbjct: 3   KSNAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMVQFKDVFLGQDKRDYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAYAWELLTGEQWFK 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EAF++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAFEIWANDIGVPRERIIRIGDNKGGAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMQPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY IDLF  LI A  QVTG      N  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVYSNYKIDLFAKLINAVAQVTGATD--LNNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  +L + +  +E  L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIEVMGAAGEDLKRQQKHVENAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL+RGL LLD  L+ L   + L+G+  F+LYDT G P D+  D+   R L 
Sbjct: 361 KNEEEQFAKTLERGLALLDDELAKLK-GDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F  A+E+QR RAR              + ++      TQF GYD L        
Sbjct: 420 -IDEAGFEAAMEQQRQRAREA------SGFGTDYNTVIRFDTPTQFKGYDHL-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           + + V+A+   G+ VE+  +GQ   V+ DQTPFY E+GGQ+GDT
Sbjct: 465 ---------------SLEATVQALFVDGQQVEQVAAGQDAVVILDQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  +  F H   + +G LR    L   +D   R ++ +NHSATH
Sbjct: 510 GVLTGQNAEFSVQDTQKYGK-AFGHIGKLRQGQLRVGDRLQAQVDEVRRSRIILNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS      LRFD +H + +   +++++ED VN  I +NLP+ T
Sbjct: 569 LMHEALRKVLGDHVGQKGSLNNDKYLRFDFSHGEAMKPQQIRAVEDIVNAQIRRNLPITT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E+A A GA AL G KY+ RVRVVS+     G +S  LCGGTH + TG+I L  I 
Sbjct: 629 NVMDLEEAKALGATALFGEKYDQRVRVVSM-----GEYSIELCGGTHAARTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E+   AGIRRIEA+TG+ A + L  Q ++L  +A  +K +   +  +V  + E  R L+
Sbjct: 684 GEAGTAAGIRRIEAVTGEAAIAQLHAQSDQLTDIAQVVKANHSYLNEKVRGLVENVRALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++         ++     +   +S V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLRDQQAAQESASLSSKAVEVKGAKLLVSELSNVEPKMLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  VT+DL DR  A +L    A  + GG GGGRP +AQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVTKDLTDRVKAGELIGELAAQV-GGKGGGRPDLAQAGGTDAQALS 861

Query: 887 QAIAGVASFL 896
            A+  V  ++
Sbjct: 862 GALVSVPEWV 871


>gi|261346225|ref|ZP_05973869.1| alanine--tRNA ligase [Providencia rustigianii DSM 4541]
 gi|282565533|gb|EFB71068.1| alanine--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 875

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/910 (42%), Positives = 549/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY  D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYATDDEAYDIWNKEIGVPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG P    E+G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGTPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDID+F+ LI A+ + TG      +  + RVI DH+RS +FLI+DG++
Sbjct: 243 RISAVLQHVNSNYDIDIFRELIAAAAEATGATD--LSNKSLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+P L   MG+A  EL + + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVPTLIKVMGTAADELQRQQAMVEKVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L G+ AF+LYDT+G PLD+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDDELASLK-GDTLEGETAFRLYDTYGFPLDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E+QR RAR       S      + +L +    ++F GY           
Sbjct: 420 -VDEEGFERAMEDQRRRARE------SSGFGADYNALIKVDKRSEFSGYQHDEQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ + G+ V+   +G++  V+ D+T FYAE+GGQ+GDT
Sbjct: 467 -----------------QATITALYKDGQPVDALNAGEEGLVILDKTAFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     + D QK       H   VE G L     +   ++ + R  + +NHSATH
Sbjct: 510 GVLTNESGNFVVLDTQKYG-QAIGHVGKVESGSLVVNHRISARVNSERRNAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HVSQ GS +    LRFD +H + +T  +L+ +ED VN  I QN  + T
Sbjct: 569 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEALTQQQLRQVEDIVNAQIRQNSEIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY +RVRV+S+     G  S  LCGGTH S TG+I L  I+
Sbjct: 629 ELMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHASRTGDIGLFSIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG  A  HL  Q E+L ++A  LK    ++V +V+   ++ R L+
Sbjct: 684 SESGTAAGVRRIEATTGATAIEHLHAQSEQLSAIAHLLKGDANSLVEKVKAALDKSRNLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  +  +   +++ D K L++++D L+ +++S II+
Sbjct: 744 KEILQLKDQQASQESASLGSKAKDVKGIKLLVSQLNDTDPKLLRTMVDDLKNQLKSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   +   K S+++ VT DL  +  A DL    A+ + GG GGGRP MA +GG +     
Sbjct: 804 L-STTSGDKVSIIVGVTNDLTAKIKAGDLVSYVAQQV-GGKGGGRPDMAMAGGSDVKALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 TAMASVEQWV 871


>gi|260581631|ref|ZP_05849428.1| alanyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260095224|gb|EEW79115.1| alanyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 874

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/913 (41%), Positives = 549/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P +   M  A  ++   ++ +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTIIDVMAEAGKDVKAKQVNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ +  D++L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLNLLDEALAQVK-DDVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+T Q A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTAQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|268593120|ref|ZP_06127341.1| alanine--tRNA ligase [Providencia rettgeri DSM 1131]
 gi|291311391|gb|EFE51844.1| alanine--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 875

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 550/911 (60%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEEWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY  D+EA+ +W K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYATDDEAYDIWNKEIGIPVERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+ID+F+ LI A+ + TG         + RVI DH+RS +FL++DG++
Sbjct: 243 RISAVLQHVNSNYEIDIFRDLIAAAAKATGATD--LENKSLRVIADHIRSCAFLVSDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIKVMGPAADELARQQAMVEKVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDEELASLK-GDTLDGEAAFRLYDTYGFPIDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E+QR RAR       S      + SL +    ++F GY           
Sbjct: 420 -VDEEGFERAMEDQRRRARE------SSGFGADYNSLIKVDKRSEFSGYQYDEQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ + G+ V+   +G++  V+ D+T FYAE+GGQ+GDT
Sbjct: 467 -----------------QATITALYKDGQPVDSLNAGEEGLVILDKTAFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D    ++TD QK       H   VE G L     +   +D   R  + +NHSATH
Sbjct: 510 GYLNNDNASFKVTDTQKYG-QAIGHIGKVEAGSLVVNHRITAVVDSARRDAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +H + +T  +L+ +ED VN  I +N  + T
Sbjct: 569 LLHAALRQVLGDHVSQKGSLVNDKYLRFDFSHFEAMTQEQLRQVEDIVNAQIRKNSEIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY +RVRV+S+     G  S  LCGGTH   TG+I L  I+
Sbjct: 629 ELMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG  A   +  Q E+L ++A  +K    ++V +V+   ++ R+L+
Sbjct: 684 SESGTAAGVRRIEATTGSMAIESIHNQSEQLSAIAHLVKGDINSLVEKVKAALDKSRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  +  +   +++ D K L++++D L+ +++S II+
Sbjct: 744 KEIVQLKDQQASQESASLSSKAKDVKGIKLLVTQLADTDPKLLRTMVDDLKNQLKSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   +   K S+++ VT DL  +  A DL    A  + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-STTSGDKVSMIVGVTNDLTAKVKAGDLISYIASQV-GGKGGGRPDMAQAGGTDVSALP 861

Query: 887 QAIAGVASFLK 897
            A+A V  +++
Sbjct: 862 AAMASVEEWVE 872


>gi|309973694|gb|ADO96895.1| Alanyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 874

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/913 (41%), Positives = 547/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYDIWNKEVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSLEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + +V G K    +  +  VI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEVVGTKD--LSNKSLHVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKDVKAKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ +  + +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALTQVK-NSVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKVLRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AG+RRIEA+TG+ A   L  Q   L   A  LK     +  +++++ E+ +K+
Sbjct: 682 ITENAVAAGVRRIEAVTGENAIEWLHNQQRILTQSADLLKSDVNTLAEKIQQLQEKAKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDSIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  +KK ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DKKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QA+     +L K
Sbjct: 860 AQAVKVAQDWLNK 872


>gi|16272755|ref|NP_438974.1| alanyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|1174496|sp|P43815|SYA_HAEIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1573826|gb|AAC22473.1| alanyl-tRNA synthetase (alaS) [Haemophilus influenzae Rd KW20]
          Length = 874

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/913 (42%), Positives = 545/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVR GGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRPGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDRKMEAQRTRAQAASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +   + D QK    +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQSVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQLENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 TQAIKVAQDWLNK 872


>gi|15603152|ref|NP_246224.1| alanyl-tRNA synthetase [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|13431888|sp|P57933|SYA_PASMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|12721647|gb|AAK03371.1| AlaS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 874

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/913 (42%), Positives = 548/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SS+L+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHTKGHQIVASSALVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHFGWEYLTSPRWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L   +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPAEKLWVTVYETDDEAYDIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI    ++TG K    +  + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKVAELTGEKD--LSNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A   + + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLIDVMAEAGIGVKEKQATVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+++ K E L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLALLDEALANVKKGE-LSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID + F++ +E QR RA++ S           + ++    G T F GY          
Sbjct: 418 T-IDEVGFDREMEAQRLRAQSASQFGM------DYNNVIRVEGCTTFEGYTASESL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVTALFADGKPVERIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G   G G   ++ D QK    +F H   +  G L    S+   +D + R   S+NHSAT
Sbjct: 508 SGYLNGQGFSFEVKDTQKYG-QVFGHIGELVSGSLTVGKSVNAVVDVKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS ++   LRFD  H + IT A+L  IE  VN  I  N  + 
Sbjct: 567 HLLHAALRQVLGEHVVQKGSLVSDVALRFDFAHHEAITKAQLVEIECLVNQQIRANHLIQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  E A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TELMELEAAKAKGAMALFGEKYADQVRVLTM-----GDFSIELCGGIHAKRTGDIGLCKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            +E++I AGIRRIEAITG+ A S L  Q   L   A  LK    ++V +++++ ++ +K 
Sbjct: 682 TTETAIAAGIRRIEAITGENAMSWLHQQQALLAQSADLLKSDVNSIVEKIQQLQDKAKKA 741

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI DV+ +   +  VD+K L+ V+D L+ ++ S +I
Sbjct: 742 EKELQVLKEKSAMQAGSDLARSAVKINDVSVIVQKLDGVDTKSLRVVVDDLKNQLSSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   + +E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 VFASVVEE-KVNLIVGVTSDLTSKVKAGELVNLLAQQV-GGKGGGRPDMAMAGGTQIENV 859

Query: 886 DQAIAGVASFLKK 898
           D A++   ++LK+
Sbjct: 860 DHALSFATTWLKE 872


>gi|254360816|ref|ZP_04976963.1| alanine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261495705|ref|ZP_05992149.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153092290|gb|EDN73359.1| alanine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261308617|gb|EEY09876.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 875

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/911 (41%), Positives = 545/911 (59%), Gaps = 55/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FLEFFQ  GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+ ++ IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G    GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +K    +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +  +LG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLATVMGQAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLNLLEEALAKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   FN  +  QR RA+A      S +    + ++ +    T F GY     +    
Sbjct: 418 K-IDEDGFNAEMTAQRERAKA------SSSFGTDYNNVIKVDSKTCFSGYTETSLND--- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V  +   G+ VE   SG+   V+ D+TPFYAE GGQ+GD
Sbjct: 468 -------------------ATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +    ++ D QK    +F H   +  G L     +   +D + R  +++NHSAT
Sbjct: 509 SGQISAEICNFEVVDTQKYG-QVFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD++  + IT ++L+ +E  VN  + +N+ V+
Sbjct: 568 HLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENIQVI 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A A GA AL G KY + VRVV +        S  LCGGTHV  TG+I L  I
Sbjct: 628 IEEMDIESAKAKGAMALFGEKYGEVVRVVEM-----SDFSIELCGGTHVKQTGDIGLFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE ++ AG+RRIEA+TG+ A + L    + ++  A  LK    + V ++ ++ E+ ++ 
Sbjct: 683 TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAKRT 742

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S       +I  VN +   +  V+ K L++++D L+ ++ S ++
Sbjct: 743 EKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLGSAVV 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +    + E K ++++ VT+DL D+ NA  L    A+ + GG GGGRP MA +GG      
Sbjct: 803 V-FATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKV-GGKGGGRPDMAMAGGSEPQHL 860

Query: 886 DQAIAGVASFL 896
            QA++    ++
Sbjct: 861 LQALSLAQEWI 871


>gi|238756253|ref|ZP_04617569.1| Alanyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238705508|gb|EEP97909.1| Alanyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 874

 Score =  923 bits (2385), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/909 (42%), Positives = 558/909 (61%), Gaps = 55/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  K F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCS 173
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI         DNFW M +TGPCGPCS
Sbjct: 123 LPKEKLWVTVYETDDEAYDIWANDVGVPRERIIRIGDKGAAFASDNFWQMGDTGPCGPCS 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 183 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ    NY+IDLF+ LI A   VTG      +  + RVI DH+RS +FLI+DG++P
Sbjct: 243 IAAVLQHVNTNYEIDLFRDLITAVADVTGASD--LSSKSLRVIADHIRSCAFLISDGVIP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG  E     L+  L T MG A  EL Q + ++E+ L+
Sbjct: 301 SNEGRGYVLRRIIRRAIRHGNILGAKETFFYKLVAPLITVMGPAADELKQQQAMVEQVLK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 361 TEEEQFARTLERGLALLDEELSQLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR       S      + SL     A++F+GYD +         
Sbjct: 419 VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDTASEFLGYDHIEQ------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + GE V+E  +G+   VV +QTPFY E+GGQ+GD G
Sbjct: 466 ----------------QATVIALFRNGEAVDEVHTGEDAVVVLNQTPFYGESGGQVGDEG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     ++D QK  +    H   + RGILR   S+   +D   R ++ +NHSATHL
Sbjct: 510 VLKSAMADFIVSDTQKYGQ-AIGHLGQLSRGILRVNDSVDAVVDSMRRNRIRLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN  I +NLP+ T 
Sbjct: 569 LHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNAQIRRNLPIQTE 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A   GA AL G KY+D+VRV+++     G  S+ LCGG H + TG+I L  I++
Sbjct: 629 LMELDEAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHANRTGDIGLFRILT 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + L  Q + L+++A  +K    N+  ++  + +  + L+ 
Sbjct: 684 ESGTAAGIRRIEAVTGEGAMALLHQQSDLLQNIAHLVKGDSNNLTDKIRTVLDRSKALER 743

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++      S  ++  V  +   +  V++K L++++D L+ ++ S II+L
Sbjct: 744 ELQQLKDQQAAQESASLSASAKQVNGVKLLVSRLDNVEAKMLRTMVDDLKNQLGSAIIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + + K S+++ VT+DL +R  A +L    A+ + GG GGGRP MAQ+GG +      
Sbjct: 804 ATTA-DDKVSLIVGVTKDLTNRVKAGELIADIAQKV-GGKGGGRPDMAQAGGTDVQALPS 861

Query: 888 AIAGVASFL 896
           A+A V +++
Sbjct: 862 ALASVEAWV 870


>gi|292487293|ref|YP_003530165.1| alanyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|292900336|ref|YP_003539705.1| alanyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291200184|emb|CBJ47312.1| alanyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291552712|emb|CBA19757.1| Alanyl-tRNA synthetase [Erwinia amylovora CFBP1430]
          Length = 876

 Score =  923 bits (2385), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 555/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  ASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHEAIAFAWELLTSSQWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFNIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF  LIQ+  QVTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFAQLIQSVAQVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG        L+  L   MG+A  +L   +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQSQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R+E+E+F KTL+RGL LLD  L +L   ++L+G+  F+LYDT G P+D+  D+   R L 
Sbjct: 361 RTEEEQFAKTLERGLALLDEELENLQ-GDMLDGETVFRLYDTFGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR       +      + ++     A++F GY  L+       
Sbjct: 420 -IDEAGFERAMEQQRQRAR------DASGFGSDYNNVIRIDQASEFKGYQQLQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ + AI   G+      +GQ+  +V D TPFYAE+GGQ+GDT
Sbjct: 466 ----------------LNAAISAIFVDGQAANTISAGQEGVIVLDATPFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     +++ QK A+    H   +  G LR    +   +D   R ++ +NHSATH
Sbjct: 510 GKLQGNSASFIVSNTQKYAQ-AIGHSGKLAIGELRVGDCVAAQVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +  + +T  E++ +E+ VN  I +NLP+ T
Sbjct: 569 LLHAALRQVLGQHVSQKGSLVNDTYLRFDFSQFEAMTPQEMRQVEEIVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH S TG+I L  I 
Sbjct: 629 NIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q+E+L  +A  +K +  N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAQLVKANHSNLNEKVRALIDHARALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +     +   +S+V+ K L++++D L+ ++ S II+
Sbjct: 744 KQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-DGKVSLITGVTKDLTDRIKAGELVGELAQKV-GGKGGGRPDMAQAGGTDAMALP 861

Query: 887 QAIAGVASFL 896
            A+AGV S++
Sbjct: 862 AALAGVESWV 871


>gi|315499502|ref|YP_004088305.1| alanyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
 gi|315417514|gb|ADU14154.1| alanyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
          Length = 880

 Score =  923 bits (2385), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/904 (49%), Positives = 594/904 (65%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR TFL++F KN HE++ SSSL+P NDPTLMFTN+GMV FKN+FTG E   Y+ 
Sbjct: 1   MPSLNQIRQTFLDYFAKNDHEIVSSSSLVPHNDPTLMFTNAGMVQFKNVFTGAETRPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+L+TKE+ L
Sbjct: 61  ATTSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAISHAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL  TVY +D+EAF LWKKI+G S D+IIRI  +DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PKDRLLATVYIDDDEAFNLWKKIAGFSDDRIIRIAGSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++EIWNLVFMQF+QQ    R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 EHIWGGPPGSPEEDGDRFVEIWNLVFMQFDQQTDGTRLNLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD+DLFK LI+AS + TG+K EG  + +HRVI DHLRS+SFLIADG+ P+NEGRGY
Sbjct: 241 VHNNYDVDLFKALIRASVEETGVKAEGEALPSHRVIADHLRSTSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L P L  EMG  Y EL +A+  I ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGANEPLMPRLAPVLVREMGDHYGELKRAEATIIETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RG+ LLD   ++L   ++L G+VAFKLYDT+G PLD+ QD + A+GL+ +++  F 
Sbjct: 361 RTLGRGMTLLDEATANLKDGDMLEGEVAFKLYDTYGFPLDLTQDAIRAKGLS-VNVAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+ R RA+  G G  + +  WFS++++ GA++F+GY+ L                
Sbjct: 420 AAMGEQKQRGRANWKGSGETSVQAEWFSIRDQAGASEFVGYEHL---------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S  + IV+ GE V E + G++++VVFD+T FY E GGQ GDTG     G 
Sbjct: 464 -------STQSHARVIVRDGESVSEGLVGERLQVVFDRTVFYPEGGGQAGDTGTLHWAGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QK+A  + VH   +  G+L     + L +D   R+    NHSA HLLH AL  
Sbjct: 517 EGRVLDTQKQAGDLIVHDVEITEGVLAVGDMVHLHVDGAKRQTTKSNHSAAHLLHAALKN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H  P++  E++ IE  VN +I QN    T++M   +A
Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHGAPVSPEEIERIEAEVNAVILQNEAATTKMMAPAEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+S+ +   G    +S  LCGGTHVS TG+I L  I+SES I
Sbjct: 637 IEAGAVALFGEKYGDEVRVLSLGHALDGADKGYSVELCGGTHVSRTGDIALFKIISESGI 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA TG+ AR +L+ Q    +SLA   KV    V  RVE +  + ++L+   A 
Sbjct: 697 AAGVRRIEAFTGEAARQYLLEQAGVARSLADQFKVPVAQVSARVEALVNDRKRLEKELAD 756

Query: 777 RKLQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            K  L V    +      I  V  ++ ++  V  K+L+ + +  +K++ SG++ LVG+  
Sbjct: 757 AKRALAVGGGGKASGPEDINGVKVIARVLDGVGGKDLRPLAEDFKKQVGSGVVALVGVL- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA+V + VT DL  RFNA +LA+ +   +GG G GG+P  AQ G P+  KA+  +  +
Sbjct: 816 DGKAAVTVAVTPDLTGRFNAAELAKAAVIAMGGQGAGGKPDFAQGGAPDATKAEGGLDAI 875

Query: 893 ASFL 896
            + +
Sbjct: 876 KAAI 879


>gi|284007755|emb|CBA73582.1| alanyl-tRNA synthetase [Arsenophonus nasoniae]
          Length = 899

 Score =  923 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/911 (42%), Positives = 544/911 (59%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GHE++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 26  KSTAEIRQAFLDFFHTKGHEIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 85

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT  + F+
Sbjct: 86  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTSEQWFN 145

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY  DE A+K+W++  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 146 LPKERLWVTVYHTDEAAYKIWQQEIGIPIERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 205

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LP  S+DTGMGLE
Sbjct: 206 TEIFYDHGEHILGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGSLKALPTPSVDTGMGLE 265

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI +  +   +     N  + RVI DH+RSS+FLI DG+ 
Sbjct: 266 RIAAVLQHVNSNYEIDLFRQLIASIAKAVALSD--LNNKSLRVIADHIRSSAFLIGDGVF 323

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           PANEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MG    EL   +  IE+TL
Sbjct: 324 PANEGRGYVLRRIIRRAVRHGYMLGAKETFFYKLVAPLIQVMGDTADELKSHQATIEKTL 383

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL RGL LLD  L+ L   + L G++AF+LYDT+G P D+  D+   R + 
Sbjct: 384 KNEEEQFARTLARGLQLLDDELAQLQ-GDTLAGEIAFRLYDTYGFPFDLTADVCRERNIK 442

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN A+E+QR RAR       S      +  + +    + F GY+          
Sbjct: 443 -VDEAGFNAAMEQQRYRARE------SSGFATDYNDVIKVDSHSDFSGYEN--------- 486

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   + V AI   G+ V     G++  ++ D+T FYAE+GGQ+GD+
Sbjct: 487 --------------NNQQATVIAIFHHGKSVNVLNQGEEGIIILDKTSFYAESGGQVGDS 532

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       +  ++D QK A     H   V  G +    S+   ID + R  + +NHSATH
Sbjct: 533 GILSNSHGQFAVSDTQKYA-QAIGHLGKVITGSITVNNSVEAKIDIERRNAIRLNHSATH 591

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +H   +T  +++ IED VN  I +N P++T
Sbjct: 592 LLHAALRDVLGEHVSQKGSLVNEKYLRFDFSHFAAMTPKQIRQIEDIVNCQIRKNDPIIT 651

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ + A   GA AL G KY+ +VRV+S+     G  S  LCGGTH + TG+I L  I 
Sbjct: 652 TLMDLDAAKEKGAMALFGEKYDAKVRVLSI-----GDFSIELCGGTHANRTGDIGLFRIK 706

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEAITGQ A   L  Q + L  +   +K    +++ +++   ++ + L+
Sbjct: 707 SESGTAAGIRRIEAITGQAAIDDLHLQSQLLAEIGQLMKGDADSLMEKIKATLDKVKLLE 766

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         KI  VN +   ++  + K+L+ ++D L+ +++S II+
Sbjct: 767 RSLNQLKGQQAAQESVSLSQKVKKINGVNLLVTQLNNTEPKQLRIIVDDLKNQLKSAIIV 826

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  IS + K S+++ VT DL  +  A DL    A+ + GG GGGRP MAQ+GG N     
Sbjct: 827 LSTISND-KVSLIVGVTNDLTAKIKAGDLISFVAQQV-GGKGGGRPDMAQAGGSNITALP 884

Query: 887 QAIAGVASFLK 897
            A+A V  ++ 
Sbjct: 885 AALASVEEWVN 895


>gi|261492574|ref|ZP_05989127.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261311733|gb|EEY12883.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 875

 Score =  923 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/911 (41%), Positives = 545/911 (59%), Gaps = 55/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FLEFFQ  GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+ ++ IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G    GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +K    +  + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKD--LDNKSLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +  +LG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGNILGTKEAFFYKLVPTLATVMGQAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  +  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLNLLEEALAKVE-NNTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   FN  +  QR RA+A      S +    + ++ +    T F GY     +    
Sbjct: 418 K-IDEDGFNAEMTAQRERAKA------SSSFGTDYNNVIKVDSKTCFSGYTETSLND--- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V  +   G+ VE   SG+   V+ D+TPFYAE GGQ+GD
Sbjct: 468 -------------------ATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +    ++ D QK    +F H   +  G L     +   +D + R  +++NHSAT
Sbjct: 509 SGQISAEICNFEVVDTQKYG-QVFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD++  + IT ++L+ +E  VN  + +N+ V+
Sbjct: 568 HLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENIQVI 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A A GA AL G KY + VRVV +        S  LCGGTHV  TG+I L  I
Sbjct: 628 IEEMDIESAKAKGAMALFGEKYGEVVRVVEM-----SDFSIELCGGTHVKQTGDIGLFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE ++ AG+RRIEA+TG+ A + L    + ++  A  LK    + V ++ ++ E+ ++ 
Sbjct: 683 TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAKRT 742

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S       +I  VN +   +  V+ K L++++D L+ ++ S ++
Sbjct: 743 EKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLGSAVV 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +    + E K ++++ VT+DL D+ NA  L    A+ + GG GGGRP MA +GG      
Sbjct: 803 V-FATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKV-GGKGGGRPDMAMAGGSEPQHL 860

Query: 886 DQAIAGVASFL 896
            QA++    ++
Sbjct: 861 LQALSLAQEWI 871


>gi|75675479|ref|YP_317900.1| alanyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
 gi|123613615|sp|Q3ST43|SYA_NITWN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|74420349|gb|ABA04548.1| alanyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
          Length = 891

 Score =  923 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/901 (51%), Positives = 613/901 (68%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F  NGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNDIRSAFLNYFAANGHQIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL  TVY +D+ AF LWKKI+GL   +IIRI  +DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDRLTATVYIDDDGAFDLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS E +G+R++EIWNLVFMQ+E+     R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DRIPGGPPGSPEQDGDRFVEIWNLVFMQYEKLPDGSRPNLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A+  +TG   +G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPQGPMKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+  L  EMG A+PEL +A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L + ++ +G+ AF LYDT+G PLD+ QD L ARG  G+D+ SF 
Sbjct: 361 KTLERGLSILDEKSASLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARG-IGVDLASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G    E IWF L+EK GAT+F+GY+                  
Sbjct: 420 DAMEQQKAKARASWSGSGEAAAESIWFPLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ GE  +   +G+   +V +QTPFY E+GGQ+GDTG  I DG+
Sbjct: 462 -----TEAAEGVVAALVKDGEEADTLKAGESGAIVLNQTPFYGESGGQVGDTGFLIADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD QKKA  +FVH   VE+G+L   M+L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTDTQKKAGDLFVHLGTVEQGVLAPGMALALEVDHDRRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + P+ LRFD  H+KPI++ EL+ IED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFAHNKPISADELRCIEDIANDVVLENGEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
             +GA AL G KY D VRVVS+   D           S  LCGGTHV  TG+I L+ +V 
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGGTDRHGAASNALGWSVELCGGTHVKRTGDIGLISVVG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ +G+RRIEA+TG +AR H     +  K+ A  L+ S  ++  R+  + EE +KL+ 
Sbjct: 697 ESAVASGVRRIEALTGHQARHHANHAIQLAKTAAGELRTSLDDMPARIASLMEERKKLER 756

Query: 773 IHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             ++ + +L +                +  +  M+  +  ++ K+LKS+ D  +K++ SG
Sbjct: 757 ELSEARKKLAMGGAASASSGATTGVRDVGGIKLMARSVEGIEIKDLKSLADQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ LV  S + KASV++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 817 VVALVATSGDGKASVVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|259909418|ref|YP_002649774.1| Alanyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224965040|emb|CAX56571.1| Alanyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|283479495|emb|CAY75411.1| alaS [Erwinia pyrifoliae DSM 12163]
          Length = 876

 Score =  923 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/910 (42%), Positives = 556/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIAFAWELLTSSQWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF  LI++  Q+TG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFAQLIKSVAQLTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG        L+  L   MG+A  +L   +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL+RGL LLD  L +L   + L+G+  F+LYDT G P D+  D+   R L 
Sbjct: 361 KTEEEQFAKTLERGLALLDEELENLQ-SDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR  S           + ++     A++F GY  L+       
Sbjct: 420 -IDEAGFERAMEQQRQRARDASGFGC------DYNNVIHIDQASEFKGYQQLQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ + AI   G+  +   +G++  +V D TPFYAE+GGQ+GDT
Sbjct: 466 ----------------LNAAITAIFVDGQAADTISAGREGVIVLDATPFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+   L +++ QK A+    H   +  G LR    +   +D   R ++ +NHSATH
Sbjct: 510 GELQGNSASLIVSNTQKYAQ-AIGHSGKLATGELRVGERVAAQVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +H + +T  E++ +E+ VN  I +NLP+ T
Sbjct: 569 LLHAALRQVLGQHVSQKGSLVNDKYLRFDFSHFEAMTQQEIRQVEEIVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHATRTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q+++L  ++  +K +  N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALAQLYSQNQQLADISHLVKANHSNLSEKVRALIDHARALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +     +   +S+V+ K L++++D L+ ++ S II+
Sbjct: 744 KQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRIKAGELVGELAQKV-GGKGGGRPDMAQAGGTDAMALP 861

Query: 887 QAIAGVASFL 896
            A+AGV  ++
Sbjct: 862 AALAGVELWV 871


>gi|330446966|ref|ZP_08310617.1| alanyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491157|dbj|GAA05114.1| alanyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 874

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/909 (41%), Positives = 536/909 (58%), Gaps = 55/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y   
Sbjct: 3   MSTDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDVFLGLEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIAYAWEFLTSVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLVVTVYETDDEAFDIWNKEVGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG P    E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+F+ LI+ + +V G      +  + RV+ DH+RS ++LI+DG++P
Sbjct: 243 IAAIMQGVHSNYEIDIFQTLIKEAAKVIGFDD--LSNQSLRVVADHIRSCAYLISDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL   + L+E+ L+
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E++ FG+TLDRGL +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEDNFGRTLDRGLTILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR RAR       +G     +    +    T+F GY    G       
Sbjct: 419 IDEEGFEAAMEEQRQRAR------DAGNFGVDYNDAIKVDAETEFCGYSATDG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              + A+ + G  V+   +G+   VV   TPFYAE+GGQ GD+G
Sbjct: 466 ----------------EGEIVALYRDGVAVDSVNAGEDALVVLTNTPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +G+   + D QK       H   V  G L     L  ++D   R  +S+NHSATHL
Sbjct: 510 ILTAEGVLFNVADTQKFGA-AIGHKGQVAEGTLTVGQKLTASVDSARRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  ILG HV+Q GS +  DGLRFD ++ + +   +L+++E  VND I  N  + T 
Sbjct: 569 MHAALRNILGEHVAQKGSLVKADGLRFDFSNLEAVKPEQLRAVEIMVNDQIRDNHAIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGG H + TG+I L  I+S
Sbjct: 629 IMDIEAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG  A   +  +D  L   A  +K    +VV +VE +    ++L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGAAAIEAMHTEDAMLAKTARLVKSDSASVVSKVEALVSHSKQLEK 743

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +I  V  +   ++  D+K L+ ++D L+ ++ SG+++L
Sbjct: 744 EIQQLKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +S + K  ++  VT+DL+ +  A +L  L A+ + GG GGGRP MAQ+GG +      
Sbjct: 804 GNVS-DDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPA 861

Query: 888 AIAGVASFL 896
           A+  VA +L
Sbjct: 862 ALETVAPWL 870


>gi|197104453|ref|YP_002129830.1| alanyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
 gi|196477873|gb|ACG77401.1| alanyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
          Length = 880

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/904 (48%), Positives = 582/904 (64%), Gaps = 34/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IRT FL+FFQ+  H ++PS+ L+P NDPTL+F N+GMVPFKN FTG E   +  
Sbjct: 1   MASLNEIRTHFLDFFQRKEHAVVPSAPLVPQNDPTLLFVNAGMVPFKNYFTGAEASPWPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI  AW+LLTKE+ L
Sbjct: 61  AASSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAISHAWELLTKEWAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY  D+EA  LWKKI+GL   KI+RI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PVEKLMVTVYHTDDEAAALWKKIAGLPDHKIVRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E IPGG P    E+G+R++EIWNLVFMQFEQ     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 EHIPGGPPGSPDEDGDRFVEIWNLVFMQFEQFADGTRADLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD+DLFK LI  S +        +   +HRVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDVDLFKDLIA-STKAQLRAEGSDTTPSHRVIADHLRSSSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  + P L   MG AYPEL +A+  I ETLR E+ERF 
Sbjct: 300 VLRRIMRRAMRHAHLLGADEPLMHRVAPTLVNLMGEAYPELRRAEPAIVETLRQEEERFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RG+ LL+   + L   ++L+G+ AFKLYDT+G PLD+ QD + A+GL  +++  F 
Sbjct: 360 RTLGRGMTLLEEATAGLKDGDVLSGETAFKLYDTYGFPLDLTQDAVRAKGLT-VNLDEFE 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+  QR  AR + +G G       WFS++++ G + F GYD                  
Sbjct: 419 QAMARQREMARENWVGSGQVAAAAEWFSIRDRLGPSDFTGYDNTE--------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    +  +  +V +G+ +E A +GQ+V+ +FD+TPFYAE+GGQ GD G     G 
Sbjct: 464 --------ATGELLVLVSEGQEIERAGAGQRVQALFDRTPFYAESGGQAGDQGEVEWQGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TDVQK+A  + VH   +  G L     + L +D + R     NHSATHLLH AL  
Sbjct: 516 RARVTDVQKQAGDLHVHDLEILEGELVPGARVRLAVDAERRASTRSNHSATHLLHAALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H +P+T+ E++ IE  VN ++ QNLP  T+ M  ++A
Sbjct: 576 VLGKHVTQKGQMVDGERIRFDFSHGQPLTAEEIERIEAEVNAVVRQNLPAQTKNMRPQEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           I +GA AL G KY D VRV+++       G +S  LCGGTHV+ TG+I L  IVSE  + 
Sbjct: 636 IDAGAMALFGEKYGDSVRVLTLGRALDGEGDYSVELCGGTHVARTGDIALFKIVSEQGVA 695

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG+ AR +L+ Q    KSLA   KV    V  R+E +  + RKL+   A  
Sbjct: 696 AGVRRIEALTGEAARRYLLEQASVAKSLAEQFKVPVSEVSARIEALQAQARKLEKELADA 755

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +           +I  V  M+ ++  V  K+L+ + +  +K++  G+I LVG++ 
Sbjct: 756 KRQLAMGGGGGAAAGPEEIGGVKVMARVMEGVGGKDLRPIAEEFKKQLPDGVIALVGVA- 814

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA+V + VT     +FNA +LA+ +   +GG G GGRP  AQ G P+ +KA + +A V
Sbjct: 815 DGKAAVTVAVTGSATAKFNAAELAKAAVLAMGGQGAGGRPDFAQGGAPDASKAAEGLAAV 874

Query: 893 ASFL 896
            + L
Sbjct: 875 KALL 878


>gi|114320637|ref|YP_742320.1| alanyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311690|sp|Q0A8K7|SYA_ALHEH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114227031|gb|ABI56830.1| alanyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 869

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/903 (41%), Positives = 526/903 (58%), Gaps = 46/903 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FLEFF+  GH ++PSS L+P NDPTL+FTN+GMVPFK++F G+E+  Y  
Sbjct: 1   MKSSAEIRNAFLEFFEHRGHTVVPSSPLVPANDPTLLFTNAGMVPFKDVFLGKEQRGYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT+   L
Sbjct: 61  ACSSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAIEYAWEFLTRTIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              RL++TVY+ED+EA  +W    G+  ++  RI   DNFWSM +TGPCGPCSEIF+D  
Sbjct: 121 PAERLWVTVYEEDDEAADIWLNEIGVDPERFGRIGAADNFWSMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+RY+EIWNLVFMQ+++  +     LP   +DTGMGLER+A V+Q 
Sbjct: 181 PEVPGGPPGSPEEDGDRYVEIWNLVFMQYDRDAEGRLAPLPMPCVDTGMGLERLAAVVQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +N++IDLF+ LI A+  + G+  E ++  + +VI DH+R+ +FLI DG++PAN+GRGY
Sbjct: 241 VHSNFEIDLFRRLIGAAAALAGLP-EDSDNASLKVIADHIRACAFLITDGVVPANDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  EP    L+  L  EMG A+PEL + + L+E  L  E++RF 
Sbjct: 300 VLRRIIRRAVRHGYKLGIDEPFFHRLVQPLADEMGGAFPELPERQALVERLLLQEEQRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LL+  L  L   EI  G+  FKL DT+G P+D+  DI   R L  +D+  F 
Sbjct: 360 ETLEQGLKLLEEDLRQLTGAEI-PGETVFKLADTYGFPVDLTADIARERDLT-LDMAGFE 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +  QR RARAHS         + +       G + FIGYD L G              
Sbjct: 418 ACMAAQRERARAHSQFKVQHGEGEQF------EGESHFIGYDQLEGH------------- 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+ + G  V+   +G++  V+ DQTPFYAE+GGQ+GD G     G 
Sbjct: 459 ----------GEVLALFRDGRSVQTLSAGEEGMVILDQTPFYAESGGQVGDQGVLETAGG 508

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +       K      H   +  G +     L   +D + R   ++NHSATHLLH AL  
Sbjct: 509 EVFEVRDTLKQGEGHGHLGRLREGRIHVGDRLRAQVDAETRWATALNHSATHLLHAALRG 568

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV Q GS + PD LRFD  H +  ++ +L+ IE  VND I  N       M  +DA
Sbjct: 569 VLGTHVQQKGSLVAPDRLRFDFAHYEAPSTEQLEQIERIVNDEIRANRAADIEHMAYDDA 628

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I +GA AL G KY D+VRV+       G  S  LCGGTHV  TG+I L  ++SE  +  G
Sbjct: 629 IETGAMALFGEKYGDQVRVLRF-----GEFSIELCGGTHVERTGDIGLCKLISEGGVAGG 683

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG RA   +   +++L  +A  +K S  N   RV ++ +  +  +    + K 
Sbjct: 684 VRRIEAVTGDRAVMWVQRTEQRLVQVAETVKASPDNAAVRVAQLVDRLKGQEKELERLKQ 743

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L  +  S        I  V  ++  + + D+K L+  +D L+ K+ + +I+L  ++ + 
Sbjct: 744 KLASQAGSDLAGQAVDIGGVKVVAARV-DADNKALRDTVDQLRNKLGTAVIVLGAVAGD- 801

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  ++  V++D  DR  A DL R  A+ + GG GGGRP  AQ+GG      + A+A V S
Sbjct: 802 KVRLVAGVSKDCTDRIKAGDLVRQVAEQV-GGKGGGRPDFAQAGGEQPEHLETALASVES 860

Query: 895 FLK 897
            ++
Sbjct: 861 LVR 863


>gi|170765841|ref|ZP_02900652.1| alanyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170124987|gb|EDS93918.1| alanyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 876

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + + L+E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQALVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +S  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LSGKVTALFVDGKAVDVINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L    ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLNVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLGEIAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|310766672|gb|ADP11622.1| Alanyl-tRNA synthetase [Erwinia sp. Ejp617]
          Length = 876

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 554/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIAFAWELLTSSQWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA  +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEALDIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF  LI++  Q+TG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFAQLIKSVAQLTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG        L+  L   MG+A  +L   +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL+RGL LLD  L +L   + L+G+  F+LYDT G P D+  D+   R L 
Sbjct: 361 KTEEEQFAKTLERGLALLDEELENLQ-SDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR  S           + ++     A++F GY  L+       
Sbjct: 420 -IDEAGFERAMEQQRQRARDASGFGC------DYNNVIHIDQASEFKGYQQLQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ + AI   G+  +   +G++  +V D TPFYAE+GGQ+GDT
Sbjct: 466 ----------------LNAAITAIFVDGQAADTISAGREGVIVLDATPFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     +++ QK A+    H   +  G LR    +   +D   R ++ +NHSATH
Sbjct: 510 GELQGNSASFIVSNTQKYAQ-AIGHSGKLATGELRVGDRVAAQVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +H + +T  E++ +E+ VN  I +NLP+ T
Sbjct: 569 LLHAALRQVLGQHVSQKGSLVNDKYLRFDFSHFEAMTQQEIRQVEEIVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHATRTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q+++L  ++  +K +  N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALAQLYSQNQQLADISHLVKANHSNLSEKVRALIDHARALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +     +   +S+V+ K L++++D L+ ++ S II+
Sbjct: 744 KQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRIKAGELVGELAQKV-GGKGGGRPDMAQAGGTDAMALP 861

Query: 887 QAIAGVASFL 896
            A+AGV  ++
Sbjct: 862 AALAGVELWV 871


>gi|260913378|ref|ZP_05919859.1| alanine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260632609|gb|EEX50779.1| alanine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 874

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/912 (42%), Positives = 541/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHTKGHQIVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHFGWEYLTSPRWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++I+RI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIVRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI    ++TG K       + RV+ DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKVAELTGEKD--LTNKSLRVVADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M SA  ++ + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLIEAMASAGIQVKEKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ +  +E L+G VAFKLYDT+G P D+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALNQVKDNE-LSGKVAFKLYDTYGFPFDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RA++ S           + ++    G T F GY          
Sbjct: 418 T-IDEAGFEREMEAQRLRAQSASQFGM------DYNNVIRMDGVTVFEGYTESETL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+  +G+ VE   +GQ   ++ D TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVTALFCEGKPVERVEAGQSAVIILDNTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G     ++ D QK    +F H   V  G L     +   +D + R + S+NHSAT
Sbjct: 508 AGRLDGQDFAFEVEDTQKYGR-VFGHIGKVTIGSLAIGQLVNAVVDVERRHRTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG+HV Q GS ++   LRFD  H + IT  +L  IE  VN  I  N  + 
Sbjct: 567 HLLHAALRQVLGTHVVQKGSLVSDVALRFDFAHPEAITKEQLIEIERVVNQQIRANHVIQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ E A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  +
Sbjct: 627 TEIMDLEAAKAKGAMALFGEKYADQVRVLTM-----GDFSIELCGGIHAKRTGDIGLCKV 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E++I AG+RRIEAITG+ A + L  Q   L   A  LK    ++V ++ +  E+ +K 
Sbjct: 682 IAETAIAAGVRRIEAITGENAITWLQEQQALLAQSAELLKSDVNSIVDKINQQQEKLKKT 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K ++ V+  S        I  V+ +   ++ VDSK L+ ++D L+ ++ S +I
Sbjct: 742 EKELLSLKEKVAVQAGSDLAKNAININGVSVIIQQLNGVDSKSLRVMVDDLKNQLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               +  E K ++++ V+ DL  +  A +L  + A+ + GG GGGRP MA +GG    K 
Sbjct: 802 AFASV-IEGKVNLIVGVSNDLTAKVKAGELVNVLAQEV-GGKGGGRPDMAMAGGTQVEKV 859

Query: 886 DQAIAGVASFLK 897
            QA+   + +LK
Sbjct: 860 SQALLVGSEWLK 871


>gi|307292727|ref|ZP_07572573.1| alanyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
 gi|306880793|gb|EFN12009.1| alanyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
          Length = 884

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 438/904 (48%), Positives = 596/904 (65%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F  NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSTNDIRRSFLDYFGANGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLESRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTKE+ L
Sbjct: 61  ATSSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LWKKI+GL  ++IIRI T DNFW+M ++GPCGPCSEIF+D G
Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPEERIIRIPTKDNFWAMGDSGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ+  +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD D FK LI+ S  +T    +G +  +HRVI DHLRS+SFLIADG+LPANEGRGY
Sbjct: 241 VHNNYDTDTFKALIEESGALTKTATDGEHQASHRVIADHLRSTSFLIADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  EPLM  L+P+L +EMG AY EL++A+ LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHIIGSKEPLMHRLVPSLVSEMGGAYQELVRAQPLIEETLLREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LLD     L +   L G+ AFKLYDT+G P D+ +D L +RGL G+D   F+
Sbjct: 361 QTLEKGLKLLDEATGDLSEGGTLPGETAFKLYDTYGFPYDLTEDALRSRGL-GVDREGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ++ ARA   G G   +++IWF + EK G T+FIGY   +G              
Sbjct: 420 KAMAEQKAAARAAWKGSGEKASDEIWFDIAEKTGNTEFIGYSSTQG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V AIV+ G   + A +G+ V +V +QTPFY E+GGQ+GD G       
Sbjct: 466 ---------EGEVVAIVKDGVNFDSAAAGETVLIVTNQTPFYGESGGQMGDAGTISSQSG 516

Query: 540 RL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  + D  K    +  H A +  G ++   ++ L++D   R ++  NHSATHLLH AL 
Sbjct: 517 LVADVEDTAKPLGRLHAHRAKIGAGSIKVGDTVHLSVDVNRRDRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS + PD LRFD +H + +T +++ +IE +VN+ +  N  V TR+M  +D
Sbjct: 577 NRLGAHVTQKGSLVAPDRLRFDFSHPEALTHSQIAAIEADVNEQVRHNEAVTTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA AL G KY D VRV+S+   D   +S  LCGGTHV +TG+I +  I+SES++ +
Sbjct: 637 AIQAGAMALFGEKYGDEVRVLSMGKGDAHSYSVELCGGTHVRATGDIAIFKIISESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ AR  L  ++++L+  A+ LK +   V  R+  + E+ R+L+   A+ K
Sbjct: 697 GVRRIEALTGEAARLWLSDREDRLRQSAAALKTTPEEVPARIAALVEQSRRLERELAEAK 756

Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             L +            K+  VNF+  +I  +D KEL+ ++D  +  + SG+  ++ +  
Sbjct: 757 KALALGGGGSAQAAGPEKVGAVNFIGQVIEGLDPKELRGLVDQNKATLGSGVSAVLAVV- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           E +A++ + VT+DL+   +AVDL R   + LGG GGGGRP MAQ GGP G+KA+ AI  V
Sbjct: 816 EGRATIAVGVTDDLVGTISAVDLVRAGVEALGGKGGGGRPDMAQGGGPEGDKAEAAIEAV 875

Query: 893 ASFL 896
            + L
Sbjct: 876 KAAL 879


>gi|53725058|ref|YP_102626.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|67639261|ref|ZP_00438139.1| alanine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|254177470|ref|ZP_04884125.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254199562|ref|ZP_04905928.1| alanyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254205880|ref|ZP_04912232.1| alanyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|59798500|sp|Q62KZ3|SYA_BURMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52428481|gb|AAU49074.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|147749158|gb|EDK56232.1| alanyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147753323|gb|EDK60388.1| alanyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|160698509|gb|EDP88479.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|238519796|gb|EEP83263.1| alanine--tRNA ligase [Burkholderia mallei GB8 horse 4]
          Length = 874

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 537/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGR  MAQ+GG    K  
Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRSDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|301155669|emb|CBW15137.1| alanyl-tRNA synthetase [Haemophilus parainfluenzae T3T1]
          Length = 874

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 547/911 (60%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDNEAYDIWHKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRQADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI  + +V G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKTAEVVGTTD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKEVKEKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ +  D +L+G+VAFKLYDT+G PLD+  D+   R  
Sbjct: 359 LRLEEEQFARTLERGLSLLDDALAQVK-DGVLSGEVAFKLYDTYGFPLDLTADVCRERD- 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RA++ S           + ++    G T+F GY          
Sbjct: 417 IAIDEAGFEREMEAQRLRAQSASQFGM------DYNNVIRVEGETKFEGYTESESL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ V+   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVTALFHDGKSVDSITAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     GI+  + D QK    +F H   +E+G L+   ++   +D   R Q S+NHSAT
Sbjct: 508 SGYLTSQGIQFNVKDTQKYG-QVFGHIGELEQGTLKVGQTVNAVVDAARRHQTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS ++   LRFD  H + IT A+L  IE  VN  + +N  V 
Sbjct: 567 HLLHAALRQVLGHHVVQKGSLVSDTALRFDFAHPEAITKAQLNEIETLVNQKVRENFVVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M+ E A A GA AL G KY+D VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDVMDIEAAKAKGAMALFGEKYSDVVRVLTM-----GDFSVELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+E+++ AG+RRIEA+TG+ A + L  Q   L   A   K     +V +++++ ++ +K 
Sbjct: 682 VAETAVAAGVRRIEAVTGENAINWLHNQQRILTQSADLFKSDVNTLVEKIQQLQDKAKKA 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI DV+ + H +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDLVKSAVKINDVSVIVHQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   I  + K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 VFASIL-DDKVNLVVGVTSDLTTKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFL 896
           + A+    ++L
Sbjct: 860 NLALTVAQNWL 870


>gi|94498454|ref|ZP_01305011.1| alanyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94422102|gb|EAT07146.1| alanyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 884

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/904 (49%), Positives = 598/904 (66%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F  NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y+ 
Sbjct: 1   MTSTNDIRRSFLDYFGGNGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLETRPYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL  TVY  D+EAF LWKKI+GL  ++IIRI T DNFW+M ++GPCGPCSEIF+D G
Sbjct: 121 PADRLTATVYHTDDEAFDLWKKIAGLPEERIIRIATKDNFWAMGDSGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ+  +    LP+ SIDTGMGLER+A V+Q 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPRPSIDTGMGLERVAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NYD D FK LI  S  ++    +G +  +HRVI DHLRS+ FLIADG+LPANEGRGY
Sbjct: 241 VTDNYDTDTFKALIAESGALSRTATDGAHKASHRVIADHLRSTGFLIADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  EPLM  L+ +L +EMG AYPEL++A+ LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHIIGAKEPLMYRLVSSLVSEMGGAYPELVRAQPLIEETLLREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+ GL LLD     L +   L G+ AFKLYDT+G P D+ +D L +RGL  +D   F+
Sbjct: 361 KTLENGLKLLDEATGDLAEGGTLAGETAFKLYDTYGFPYDLTEDALRSRGLT-VDRAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ++ ARA   G G   +++IWF + EK G T+FIGY                   
Sbjct: 420 AAMAEQKAAARAAWKGSGEKASDEIWFDIAEKAGNTEFIGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V AIV+ G   + A +G  V +V +QTPFY E+GGQ+GD G     G 
Sbjct: 461 ----ATTQGEGEVLAIVKDGVNFDSAAAGDTVTIVTNQTPFYGESGGQMGDAGRITTQGG 516

Query: 540 RLQITDVQKKA-EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + + D   K    +  HHA +E G ++   ++ L++D   R ++  NHSATHLLH AL 
Sbjct: 517 FVALVDDTAKPLGRVHAHHATIEAGSIKVGDTVHLSVDVDRRDRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS +  D LRFD +H + +T A++ +IE +VN  +  N  V TR+M  +D
Sbjct: 577 KELGAHVTQKGSLVAADRLRFDFSHPEALTHAQIAAIEADVNAQVRHNEEVTTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+A+GA AL G KY D VRV+S+   D   +S  LCGGTHV +TG+I L  IVSES++ +
Sbjct: 637 AVAAGAMALFGEKYGDEVRVLSMGRGDDAHYSVELCGGTHVRATGDIALFKIVSESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ AR  L+ +D+KL+  A+ LK +  +V  R+  + E+ RKL+   A+ K
Sbjct: 697 GVRRIEALTGEAARLWLVERDDKLRQTAAALKTTPEDVPTRIAALVEQSRKLERELAEAK 756

Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             L +   S        KI +++F+  +I  +D KEL+ ++D  +  + SG+  ++ +  
Sbjct: 757 KALALGGGSAAQTAGPEKIGNIDFLGQVIEGLDPKELRGIVDQNKATLGSGVSAVLAVV- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + +AS+ + VT+DL  + +AVDL R   + LGG GGGGRP MAQ GGP+G+KA  A+  V
Sbjct: 816 DGRASIAVGVTDDLKGQISAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGDKATAALDAV 875

Query: 893 ASFL 896
            + L
Sbjct: 876 KTAL 879


>gi|161525078|ref|YP_001580090.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189350179|ref|YP_001945807.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|205830000|sp|A9AC16|SYA_BURM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160342507|gb|ABX15593.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189334201|dbj|BAG43271.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
          Length = 874

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 539/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +     N  + +VI DH+R+ +FLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEVSD--LNNNSLKVIADHIRACAFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|319897692|ref|YP_004135889.1| alanyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317433198|emb|CBY81572.1| alanyl-tRNA synthetase [Haemophilus influenzae F3031]
          Length = 874

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/913 (41%), Positives = 546/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+F N+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFANAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK  I  + ++ G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTFIAKTAEIVGATD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS +  D IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQVK-DGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA++ S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQSASQFG------VDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK    +F H   + +G L+   S+   +D + R  +S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYG-QVFGHIGELTQGSLKVGQSVNAIVDAKRRHNISLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIEILVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L      LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSTDLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|294141935|ref|YP_003557913.1| alanyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293328404|dbj|BAJ03135.1| alanyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 874

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/909 (42%), Positives = 555/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++RT FLE+F KNGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRTAFLEYFHKNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  + +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAITYAWNFLTQELKIPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D EA+ +W K  G+S D +IRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDNEAYDIWTKEIGVSEDNLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG P    E+G+R+IEIWN+VFMQ+ +Q+  +   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSNGDMLALPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++  +        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILAVTD--LENKSLRVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+     L+P L   MG A   L++ + ++ ++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDSFFYKLVPTLILVMGDAAKGLVETQDIVVKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LDG L+ L   ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDGALNALT-GKVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQR RA+A       G     +    +    T+F GY  L           
Sbjct: 420 EAGFELAMSEQRKRAQAA------GQFATDYNDSLKIDEETEFSGYLDLVS--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + AI ++GE V E  +G++  VV D TPFY E+GGQ GD+G  
Sbjct: 465 --------------NAKITAIYKEGESVTEINAGEEAVVVLDTTPFYGESGGQSGDSGTL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G    + D QK       H   ++ G L    SL  ++D   R++  +NHS THLLH
Sbjct: 511 SAAGFDFIVKDTQKYG-QAIGHIGTLKTGSLSLGQSLEASVDKALRQRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + +   EL+++ED VN  I  N  +  ++M
Sbjct: 570 AALRQLLGTHVSQKGSLVDPERLRFDFSHFEGVKPEELQAVEDLVNTQIRCNHELTAQVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             + A   GA AL G KY D VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 TIDAAKDKGAMALFGEKYADEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++ GQ  +L   A  LK   G+VV +++   +  ++L+   
Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAGQKSELDKAAKLLKADAGSVVTKLKAQLDRTKQLEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +L             +I  V  +   +  V+   L+ ++D L++K+ SGI++L G
Sbjct: 745 SQLKDKLAAATSADLAGEAQEINGVKVLIKKLDGVEPGALRGLLDELKQKLGSGIVVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ + K ++++ VT+DL  +  A +L    A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 IAGDAKVNLIVGVTKDLTSKVKAGELVANIAAQV-GGKGGGRPDMAQAGGSKPENLDAAL 862

Query: 890 AGVASFLKK 898
             VAS+L++
Sbjct: 863 NQVASWLQE 871


>gi|194290351|ref|YP_002006258.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193224186|emb|CAQ70195.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 874

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/910 (42%), Positives = 538/910 (59%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLTK + L 
Sbjct: 61  TSAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKTYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ A++I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYAEDDEAYDIWAKEVGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIE+WNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEVWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + T +     N  + +VI DH+R+ +FLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETHID--NLNQNSLKVIADHIRACAFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+P L  +MG AYPEL +A+  + E L++
Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGQKTPFFHKLVPDLVEQMGQAYPELAEAQSRVTEVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  L+   L   + L+G++AFKL+DT G PLD+ QD+   +   
Sbjct: 359 EEERFFETIENGMAILDAALAELKLKGGKTLDGELAFKLHDTFGFPLDLTQDVCREQ-EI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           G+D  +F+ A+  QR +ARA      +         L+     T F GY+ L        
Sbjct: 418 GVDEAAFDAAMSRQREQARAAGKFKMAAG-------LEYIGDKTVFHGYEKLELP----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V+    GQ   VV D TPFYAE+GGQ GD 
Sbjct: 466 -----------------QAKVTALYVDGAAVDTMQPGQTGVVVLDNTPFYAESGGQAGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D  K    +F H   ++ G L+   ++   +D   R +   NHSATH
Sbjct: 509 GVLKAGNAVFAVADTTKIQADVFGHQGTLQGGALKVGDAVSAQVDALRRARTVRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD +H+  +T A+++ +E+ VN  I +N     
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFSHNAALTDAQIRQVEEIVNAEILRNEDTHA 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV  TG+I L  IV
Sbjct: 629 EVMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  +L G D KL   A+ LK     +V R+ ++ E+ R L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNALHYLQGLDAKLNEAAAVLKAQPSELVPRIGQVQEQVRALE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +L              +  +  ++  +   D K L+  MD L+ K+QS  I+
Sbjct: 743 KELERLKSKLAASQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LGAVA-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFL 896
           QA+AGV+ ++
Sbjct: 861 QALAGVSEWV 870


>gi|257454192|ref|ZP_05619462.1| alanyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257448365|gb|EEV23338.1| alanyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 890

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/915 (40%), Positives = 526/915 (57%), Gaps = 52/915 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  F+ +F +NGH  + SSSL+P NDPTL+FTN+GM  FK++F G +K  Y+   
Sbjct: 6   SSADIRQAFINYFAENGHTPVASSSLVPHNDPTLLFTNAGMNQFKDVFLGIDKRDYKRAV 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI   W+ LT  K   L
Sbjct: 66  SSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQQAIPFCWEFLTSDKWLGL 125

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +LY+TVY  D+EAF +W  + GL A++IIRI  N       DNFW+M +TGPCGPC+
Sbjct: 126 PKDKLYVTVYHTDDEAFDIWHNVVGLPAERIIRIGDNKGGQYQSDNFWAMGDTGPCGPCT 185

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           E+F+D GE I GGLP    E+G+R++EIWN VFMQF +Q       LP  S+DTGMGLER
Sbjct: 186 EVFYDHGEHIWGGLPGTPEEDGDRFVEIWNNVFMQFNRQKDGTLEKLPAPSVDTGMGLER 245

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ++ ++Q   +NY+ID+F HL+Q + QV       +  +  + +V+ DH+RS SFLIADG+
Sbjct: 246 ISAIMQGVHSNYEIDIFTHLMQHAAQVIGLPNDIDLQSEPSLKVLADHIRSVSFLIADGV 305

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L + +  IE+ 
Sbjct: 306 LPSNEGRGYVLRRIIRRAVRHGNKLGATDNFFYKLVAPLAQIMGDAYPQLREQQANIEQA 365

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +  E+E+F KTL +GL LL   L  L   + L+G   FKLYDT+G P D+  DI+  R  
Sbjct: 366 ILKEEEQFAKTLSQGLKLLSQELDSLKSGDTLSGATVFKLYDTYGFPADLTADIVRERD- 424

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F Q + +QR+RAR        G     +  L +   AT+F+GYD         
Sbjct: 425 ISIDEAGFEQGMAQQRARAREA------GKFGVDYNQLIQVDSATEFLGYDKAEH----- 473

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             SS +  +  +G+  E+   G +  +V   TPFYAE GGQ G+
Sbjct: 474 ------------------SSTITHLYLEGKSAEQLQEGDEGVIVLSATPFYAEGGGQAGE 515

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +    ++ D +K  + I   H +V+ G +R   S    +  Q R   + NHSAT
Sbjct: 516 LGDIQTETGVFEVQDTKKSGQAIIH-HGVVKMGSIRQGQSSEARVASQVRAMSAKNHSAT 574

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL   LG+ V+Q GS +  + LRFD ++ K +T  ++ +IE+ VN  I  N P  
Sbjct: 575 HLLHAALREHLGTGVTQKGSLVNSEVLRFDFSYDKALTEQDIITIENIVNQQILANQPAT 634

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLL 708
             +++   A   GA AL G KY D VRV+S+    +DG   S  LCGG HV  TG+I L 
Sbjct: 635 VEMLSMTQAQDKGAMALFGEKYGDTVRVLSMGTVDKDGKPFSIELCGGLHVQRTGDIGLF 694

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE  I AGIRRIEA+TG  A  ++   +++L  LAS LK  +  +  RV ++ ++ R
Sbjct: 695 KIVSEQGIAAGIRRIEAVTGMGAVKYVQQGEKQLNQLASQLKAKRDEIADRVNQMTDKTR 754

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L+    + + +L              I     +   +  +D K L+++ D ++ K+  G
Sbjct: 755 DLEKQLERLQQKLASSQAKDLINNVQDINGQKVLIASLPGMDGKALRTIADDMKSKLHDG 814

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I++L G++ + K ++   V +DL  +  A D+ +  ++ L GG GGG+P  AQ G  +  
Sbjct: 815 IVVLAGVA-DDKIALTASVGKDLTSKIKAGDIIKHLSEQL-GGKGGGKPDFAQGGATDVA 872

Query: 884 KADQAIAGVASFLKK 898
                +  + ++L +
Sbjct: 873 GLPTVLDALPNWLAE 887


>gi|85715195|ref|ZP_01046179.1| alanyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
 gi|85698110|gb|EAQ35983.1| alanyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
          Length = 892

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/902 (51%), Positives = 610/902 (67%), Gaps = 42/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL FF  N H+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNDIRSAFLNFFAANDHQIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRSYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL  TVY +D+EAF LWKKI+GL   +IIRI   DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDRLTATVYIDDDEAFDLWKKIAGLPESRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG P    E+G+R++EIWNLVFMQ+E+ +   R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DRIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLSDGSRPNLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A+  +TG   +G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPQGPMKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+  L  EMG AYPEL +A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMWRLVGVLVREMGEAYPELQRARSLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L ARG  G+D+ SF 
Sbjct: 361 KTLDRGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARG-IGVDLASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G    E IWF L+EK GAT+F+GY+                  
Sbjct: 420 DAMEQQKAKARASWSGSGEAAAESIWFPLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+VQ G+  +   +G+   +V +QTPFY E+GGQ+GDTG    DG+
Sbjct: 462 -----TESAEGVVVALVQDGKETDILKAGESGAIVLNQTPFYGESGGQVGDTGALTADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD QKKA  +FVH  IVE+G+L   M+L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 CFRVTDTQKKAGDLFVHLGIVEQGVLAPGMALALEVDHDRRAAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + P+ LRFD  H+KPI+  EL+ IED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFAHNKPISGDELRRIEDIANDVVLENGEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-------EDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             +GA AL G KY D VRVVS+          +    S  LCGGTHV  TG+I L+ ++S
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGGAGRQGAPSNALGWSVELCGGTHVKRTGDIGLISVIS 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ +G+RRIEA+TG RAR H     +  K+ A  L+ S  ++  R+  + EE +KL+ 
Sbjct: 697 ESAVASGVRRIEALTGHRARHHANDAIQLAKTAAGELRTSLDDMPARIAALVEERKKLER 756

Query: 773 IHAKRKLQLNV----------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             ++ + +L +                 +  +  M+  +  ++ K+LKS+ D  +K++ S
Sbjct: 757 ELSEARKKLAMGGGAASASSGAATGVRDVGGIKLMARSVEGIEIKDLKSLADQGKKQLGS 816

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G++ LV  S + KASV++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G
Sbjct: 817 GVVALVATSGDGKASVVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDG 876

Query: 883 NK 884
            K
Sbjct: 877 AK 878


>gi|331017460|gb|EGH97516.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 874

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/912 (42%), Positives = 537/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  +PSSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P++EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E+F KTL++GL +++  L+ L    ++ G++ FKLYDT+G P+D+  DI   R L 
Sbjct: 359 RGEEEQFAKTLEQGLKIIEQDLAELK-GTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R  ++D  K     F+HH +V  G L   + +   +  + R    +NHSATH
Sbjct: 508 GFLLAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVVT
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|28869047|ref|NP_791666.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|37999391|sp|Q885J0|SYA_PSESM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28852287|gb|AAO55361.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 874

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/912 (42%), Positives = 538/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  +PSSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P++EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E+F KTL++GL +++  L+ L    ++ G++ FKLYDT+G P+D+  DI   R L 
Sbjct: 359 RGEEEQFAKTLEQGLKIIEQDLAELK-GTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ + G+ V    +G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKDGQSVTHLNAGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R  ++D  K     F+HH +V  G L   + +   +  + R    +NHSATH
Sbjct: 508 GFLLAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVVT
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|127512149|ref|YP_001093346.1| alanyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|205830205|sp|A3QC89|SYA_SHELP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126637444|gb|ABO23087.1| alanyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 874

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/909 (42%), Positives = 557/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLEFF++NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRSAFLEFFRRNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGEDKRDYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+E  L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWTFLTEELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY+ D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTVYETDDEAFEIWNKEIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG P    E+G+R+IEIWN+VFMQ+ +Q       LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGTMDPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++ G+        + RV+ DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQSLIKKTAEILGVTD--LENKSLRVVADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A  EL+  + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKELVATQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L   E L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDNALSQLEGKE-LDGETAFKLYDTYGFPVDLTADVCRERDIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G  +  +    +    T+F GY  L G         
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GQFDTDYNDSLKIDAETEFCGYSDLNG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V  +   G+ V+    G +  VV D TPFY E+GGQ GD G  
Sbjct: 465 --------------EAKVIGLYVDGQAVDALAEGDQGVVVLDSTPFYGESGGQCGDKGLL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +G+  ++ D QK       H  +V+ G +    +L   +D + R +  +NHS THLLH
Sbjct: 511 SAEGVEFEVKDTQKYG-QAMGHIGLVKAGSIAMGQTLNAAVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + +   ELK +ED VN  I +N  +   +M
Sbjct: 570 AALRQVLGTHVSQKGSLVEPERLRFDFSHFEAVKREELKQVEDLVNTQIRRNHELKAEVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DIDQAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q  +L+  AS LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGIRRIEAVTGAAAIAYVGEQQAQLEQAASLLKGDSASVVAKLKAQLDKTKQLEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +L             ++A V  +  ++  V++  L+ + D L++K+QSGI++L G
Sbjct: 745 SQLKDKLAAATSADLAGEAQELAGVKVLVKLLEGVEAGALRGLQDELKQKLQSGIVVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ + K +++  VT+DL  +  A +L  + A  + GG GGGRP MAQ+GG    K   A+
Sbjct: 804 IAGDAKVNLIAGVTKDLTGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSEPEKLAGAL 862

Query: 890 AGVASFLKK 898
             V  +L +
Sbjct: 863 DSVIPWLSE 871


>gi|88860236|ref|ZP_01134874.1| alanyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88817434|gb|EAR27251.1| alanyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 866

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/903 (43%), Positives = 531/903 (58%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F    H+ + SSSL+P NDPTL+FTN+GMV FK++F G +K  Y   
Sbjct: 4   MTTAQIRQAFLDYFSSKQHQAIASSSLVPGNDPTLLFTNAGMVQFKDVFLGADKRPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT    L 
Sbjct: 64  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTTVLKLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L +TVY  D+EAF +W K  GL AD+IIRITT DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 124 TEKLLVTVYHTDDEAFDIWHKQVGLPADRIIRITTTDNFWSMGDTGPCGPCSEIFYDHGD 183

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS+ E+G+R+IEIWNLVFMQF +        LPK S+DTGMGLER++ ++Q  
Sbjct: 184 DIWGGPPGSAEEDGDRFIEIWNLVFMQFNRHADGSMEPLPKQSVDTGMGLERISAIMQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID+F+ LI+A+  VT  +       + RVI DH+RS +FLIADG++P+NEGRGYV
Sbjct: 244 HSNYEIDIFQGLIRAAADVTNAQD--LEDKSLRVIADHIRSCAFLIADGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +     L+ AL  +MG AY EL + + +IE+ LR E+E+F K
Sbjct: 302 LRRIIRRAVRHGNKLGAKDNFFHKLVGALAEQMGDAYQELYKQREIIEKVLRIEEEQFSK 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L+  L  +   +++ GDV FKLYDT+G P D+  D+   R +  ID   F  
Sbjct: 362 TLERGLAILEDGLKDIT-GDVIPGDVVFKLYDTYGFPADLTADVARERFMT-IDEPGFQA 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +  QR  A+        G     +    +    T F GY+                   
Sbjct: 420 CMAAQRKMAQQA------GKFGTDYNEQLKSDKHTDFKGYEH------------------ 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S  V  +  +G+ V     GQK  VV D+TPFYAE+GGQ GD G     G  
Sbjct: 456 -----EHFSGTVIELFFEGQSVNSLADGQKGIVVLDRTPFYAESGGQAGDKGILKIAGGE 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             + +  K        H  V +G +     +   ID   R  +  NH+ATHLLH AL  +
Sbjct: 511 FSVYNTTKLGNAF--AHTGVIQGQIALNDRVDAQIDTTRRDNIRKNHTATHLLHEALRQV 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS +  + LRFD +H + +T A+L  IE  VN  I +N+ + T +M  +DA 
Sbjct: 569 LGEHVGQKGSLVESERLRFDFSHFEGVTKAQLIEIELMVNAEIRRNVDLQTELMQIDDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY+D VRVVS+     G  S  LCGGTHV   G+I L  IVSES I AGI
Sbjct: 629 AKGAMALFGEKYDDEVRVVSI-----GEFSIELCGGTHVKRLGDIGLFKIVSESGIAAGI 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A   +  Q E L  +A+ +K    + V +V  + E  + L+    +   +
Sbjct: 684 RRIEAVTGAAAIEVMHHQAEVLNHIAALVKSDANSAVEKVTALVERTKGLEKEINQLNDK 743

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S  +IA V  +   ++  +SK L+ ++D L+ K+ SG+I L G+++  K
Sbjct: 744 LASAAGAGLLDSVIEIAGVKVLIANVAGTESKALRGMVDDLKNKLGSGVIAL-GVAEGDK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  +F A +L    A+ + GG GGGRP MAQ+GG        A+  VA++
Sbjct: 803 VSLITGVTKDLTGKFKAGELVNFMAQQV-GGKGGGRPDMAQAGGSEPEHLASALDSVAAW 861

Query: 896 LKK 898
           + +
Sbjct: 862 ISE 864


>gi|90580351|ref|ZP_01236158.1| alanyl-tRNA synthetase [Vibrio angustum S14]
 gi|90438653|gb|EAS63837.1| alanyl-tRNA synthetase [Vibrio angustum S14]
          Length = 874

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/909 (41%), Positives = 537/909 (59%), Gaps = 55/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGLEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIAYAWEFLTSVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF++W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLVVTVYETDDEAFEIWNKEVGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG P    E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+F+ LI+ + +V G +    +  + RV+ DH+RS ++LI+DG++P
Sbjct: 243 IAAIMQGVHSNYEIDIFQTLIKEAAKVIGFED--LSNQSLRVVADHIRSCAYLISDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL   + L+E+ L+
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E++ FG+TLDRGL +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   RG   
Sbjct: 361 IEEDNFGRTLDRGLTILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVARERGFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR RAR       +G     +    +    T+F GY    G       
Sbjct: 419 IDEDGFEAAMEEQRQRAR------DAGNFGVDYNDAIKVDAETEFCGYSATDG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              + A+ + G  V+   +G++  VV   TPFYAE+GGQ GD+G
Sbjct: 466 ----------------EGEIVALYRDGVAVDSVNAGEEALVVLTNTPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +G+   + D QK       H   V  G L     L  ++D   R  +S+NHSATHL
Sbjct: 510 ILTAEGVLFNVADTQKFGA-AIGHKGQVAEGTLTVGQKLTASVDSARRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  ILG HV+Q GS +  DGLRFD ++ + +   +L+++E  VND I  N  + T 
Sbjct: 569 MHAALRNILGEHVAQKGSLVKADGLRFDFSNLEAVKPEQLRAVETMVNDQIRANHAIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGG H + TG+I L  I+S
Sbjct: 629 IMDIEAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG  A   +  +D  L   A  +K    +VV +VE +    ++L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGASAIEAMHTEDAMLAKTARLVKSDSASVVSKVEALVSHSKQLEK 743

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +I  V  +   ++  D+K L+ ++D L+ ++ SG+++L
Sbjct: 744 EIQQLKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +S + K  ++  VT+DL+ +  A +L  L A+ + GG GGGRP MAQ+GG +      
Sbjct: 804 GNVS-DDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPA 861

Query: 888 AIAGVASFL 896
           A+  VA +L
Sbjct: 862 ALETVAPWL 870


>gi|327190521|gb|EGE57615.1| alanyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 884

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/896 (54%), Positives = 633/896 (70%), Gaps = 38/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS+ E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ L  A E   G+K       +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLTGAIEDAVGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR   G+DI  F 
Sbjct: 359 KTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF L+EK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYD------------------ 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG    D  
Sbjct: 460 -----TEAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QKK EG+FVH   V  G  +T  ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       +    +S  LCGGTHVS+TG+I L+ I+ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E RKL+   
Sbjct: 695 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVETLIDERRKLEREL 754

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  K +L +         +  ++A V ++   ++ VD K+LK + D  +  I SGI+ L+
Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           G+S++ KAS ++ VT DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 815 GVSEDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870


>gi|221214968|ref|ZP_03587936.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221165195|gb|EED97673.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD1]
          Length = 874

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 539/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +     N  + +VI DH+R+ +FLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEVGD--LNNNSLKVIADHIRACAFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|302132483|ref|ZP_07258473.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 874

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/912 (42%), Positives = 537/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  +PSSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P++EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E+F KTL++GL +++  L+ L    ++ G++ FKLYDT+G P+D+  DI   R L 
Sbjct: 359 RGEEEQFAKTLEQGLKIIEQDLAELK-GTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R  ++D  K     F+HH +V  G L   + +   +  + R    +NHSATH
Sbjct: 508 GFLLAGDTRFDVSDTTKTGG-AFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVVT
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|221202097|ref|ZP_03575133.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221204772|ref|ZP_03577789.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221175629|gb|EEE08059.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221178180|gb|EEE10591.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 874

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 539/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +     N  + +VI DH+R+ +FLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIEAAARVTEVGD--LNNNSLKVIADHIRACAFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|205830261|sp|Q1QMV7|SYA_NITHX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 891

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/901 (50%), Positives = 607/901 (67%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F  NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNDIRSAFLNYFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTEEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY +D+EAF LWKKI+GL   +IIRI   DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLIATVYIDDDEAFGLWKKIAGLPDSRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG P    E+G+R++EIWNLVFMQ+E+     R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DKIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLPDGSRLNLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A+  +TG    G    + RVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPHGPMKASLRVIADHLRATSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+  L  EMG A+PEL +A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L ARG  G+DI SF 
Sbjct: 361 KTLERGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARG-IGVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G   TE IWF L+EK GAT+F+GY+                  
Sbjct: 420 DAMEQQKAKARASWSGSGEAATETIWFPLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G+  +   +G+   +V +QTPFY E+GGQ+GDTG   GDG+
Sbjct: 462 -----TEIAEGAVAALVKDGKEADSLKAGESGAIVLNQTPFYGESGGQVGDTGILTGDGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+++TD QKKA  +FVH   VE+G L   M+L L +D   R  +  NHSATHLLH AL  
Sbjct: 517 RVRVTDTQKKAGDLFVHLGTVEQGTLTPGMALALEVDRARRGAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + P+ LRFD  H+KPI++ EL+ IED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFVHNKPISADELRRIEDIANDVVLENGEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             +GA AL G KY D VRVVS+          +    S  LCGGTHV  TG+I L+ +  
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGSTGRQGAASNALGWSVELCGGTHVKRTGDIGLISVTG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ +G+RRIEA+TG  AR H     +  K+ A  L+ +  ++  R+  + EE +KL+ 
Sbjct: 697 ESAVASGVRRIEALTGHHARHHANDAIQLAKTAAGELRTTLDDMPPRITSLMEERKKLER 756

Query: 773 IHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             ++ + +L +                +  +  M+  +  ++ K+LK++ D  +K++ SG
Sbjct: 757 ELSEARKKLAMGGGAASASSGAAGVRDVGGIKLMARSVEGIEIKDLKNLADQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ LV  S + KAS+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 817 VVALVATSGDGKASIVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|83312631|ref|YP_422895.1| alanyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
 gi|123541005|sp|Q2W1D9|SYA_MAGMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|82947472|dbj|BAE52336.1| Alanyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
          Length = 878

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/906 (49%), Positives = 597/906 (65%), Gaps = 40/906 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MQTANEIRRTFLDFFEKNGHTVVNSSPLVPRNDPTLMFTNAGMVQFKNVFTGIEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+TK+F +
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDLAIEHAWNLITKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY +D++A   WKKI+GL   +IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DKSRLLVTVYHDDDQAADAWKKIAGLPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG P    ++G+R+IEIWNLVFMQFEQ +K+ R  LPK SIDTGMGLER+A +LQ 
Sbjct: 181 EHIFGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKETRIPLPKPSIDTGMGLERLAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD+DL + LI+AS + +    +G + V+HRV+ DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDVDLLRALIEASAEASNTDPDGPHKVSHRVVADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G TEPL+  L+PAL  +MG AYPEL++A  LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLMGCTEPLLHKLVPALTRQMGEAYPELVRANALITETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLD+GL LLD  ++ +G  + L G+VAFKLYDT+G PLD+ QD L A+G  G+D   F 
Sbjct: 361 VTLDKGLKLLDDEITRIGSGQKLAGEVAFKLYDTYGFPLDLTQDALKAKG-IGVDTDGFA 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ AR    G G   TE +WF L+EK GA++F+GYD                  
Sbjct: 420 SAMERQRAEARKAWAGSGDTATETVWFELREKLGASEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA----- 534
                       + A+V+ G++VE    G +V V+ +QTPFY E+GGQ+GDTG       
Sbjct: 462 -----AEQAEGKIVALVENGKVVEAVHPGHQVAVIANQTPFYGESGGQMGDTGVITLGTP 516

Query: 535 -IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G    + +TD QKK   + VH   VE G +         ++   R     +HSATHLL
Sbjct: 517 GTGGKATIAVTDTQKKLGDLIVHFGTVEGGPVAVGEDAHFAVESTRRDATRGHHSATHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ILG HV+Q GS + PD LRFD  H+K +++ E +++E  VN  I  N  V T++
Sbjct: 577 HAALRDILGDHVTQKGSQVGPDRLRFDFAHTKALSAEETRAVEAEVNRRIRLNAEVATKV 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DAI +GA AL G KY + VRVVS+     G  S+ LCGGTH + TG+I    IV+E
Sbjct: 637 MTPDDAIKAGAMALFGEKYGEEVRVVSM-----GDLSTELCGGTHANRTGDIGGFKIVAE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG    +    Q++ L   A  LK +  ++  R+  + ++ RKL+  
Sbjct: 692 SAVASGVRRIEAVTGPAFLAWAQAQEDLLAKAADTLKAAPADLPARIAGLMDDRRKLERE 751

Query: 774 HAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            A+ + QL     +  +   +  + +   ++S V +K+LK + D ++K+I SGII LV  
Sbjct: 752 LAEVRKQLATGGGQGAATKTVNGITYAGKVLSGVPAKDLKGMADEIKKQIGSGIIALVS- 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + KAS+++ VTEDL  + +AVDL R+ ++ LGG GGGGRP MAQ+GGP+ + A  A+ 
Sbjct: 811 DADGKASIVVCVTEDLTSKHSAVDLVRIGSEALGGKGGGGRPDMAQAGGPDASAAQAAVD 870

Query: 891 GVASFL 896
            +   L
Sbjct: 871 RIEQAL 876


>gi|92117171|ref|YP_576900.1| alanyl-tRNA synthetase [Nitrobacter hamburgensis X14]
 gi|91800065|gb|ABE62440.1| alanyl-tRNA synthetase [Nitrobacter hamburgensis X14]
          Length = 897

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/901 (50%), Positives = 607/901 (67%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F  NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 7   MSGVNDIRSAFLNYFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L
Sbjct: 67  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTEEFGL 126

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY +D+EAF LWKKI+GL   +IIRI   DNFW M +TGPCGPCSEIF+D G
Sbjct: 127 PKDKLIATVYIDDDEAFGLWKKIAGLPDSRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 186

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG P    E+G+R++EIWNLVFMQ+E+     R  LPK SIDTG GLER+A VLQ 
Sbjct: 187 DKIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLPDGSRLNLPKPSIDTGAGLERVAAVLQG 246

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A+  +TG    G    + RVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 247 KHDNYDIDLFVALIRAAADLTGADPHGPMKASLRVIADHLRATSFLIADGVLPSNEGRGY 306

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+  L  EMG A+PEL +A+ LIEETLR E+ RF 
Sbjct: 307 VLRRIMRRAMRHAQLLGAKEPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 366

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L ARG  G+DI SF 
Sbjct: 367 KTLERGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARG-IGVDIASFT 425

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G   TE IWF L+EK GAT+F+GY+                  
Sbjct: 426 DAMEQQKAKARASWSGSGEAATETIWFPLREKLGATEFLGYE------------------ 467

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G+  +   +G+   +V +QTPFY E+GGQ+GDTG   GDG+
Sbjct: 468 -----TEIAEGAVAALVKDGKEADSLKAGESGAIVLNQTPFYGESGGQVGDTGILTGDGV 522

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+++TD QKKA  +FVH   VE+G L   M+L L +D   R  +  NHSATHLLH AL  
Sbjct: 523 RVRVTDTQKKAGDLFVHLGTVEQGTLTPGMALALEVDRARRGAIRANHSATHLLHEALRQ 582

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + P+ LRFD  H+KPI++ EL+ IED  ND++ +N  V TR+M  +DA
Sbjct: 583 VLGDHIAQRGSLVAPERLRFDFVHNKPISADELRRIEDIANDVVLENGEVTTRLMAVDDA 642

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             +GA AL G KY D VRVVS+          +    S  LCGGTHV  TG+I L+ +  
Sbjct: 643 REAGARALFGEKYGDEVRVVSMGSTGRQGAASNALGWSVELCGGTHVKRTGDIGLISVTG 702

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ +G+RRIEA+TG  AR H     +  K+ A  L+ +  ++  R+  + EE +KL+ 
Sbjct: 703 ESAVASGVRRIEALTGHHARHHANDAIQLAKTAAGELRTTLDDMPPRITSLMEERKKLER 762

Query: 773 IHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             ++ + +L +                +  +  M+  +  ++ K+LK++ D  +K++ SG
Sbjct: 763 ELSEARKKLAMGGGAASASSGAAGVRDVGGIKLMARSVEGIEIKDLKNLADQGKKQLGSG 822

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ LV  S + KAS+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 823 VVALVATSGDGKASIVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 882

Query: 884 K 884
           K
Sbjct: 883 K 883


>gi|157148231|ref|YP_001455550.1| alanyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|205830024|sp|A8ANQ1|SYA_CITK8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157085436|gb|ABV15114.1| hypothetical protein CKO_04048 [Citrobacter koseri ATCC BAA-895]
          Length = 875

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/910 (43%), Positives = 564/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRTLIEAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVV 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++    GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDGASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAISAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFAFAVSDTQKYG-QAIGHIGTLSTGSLKVGDAVQADVDDARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  ILG+HV+Q GS +    LRFD +H++ +  +E++++ED VN  I +NLPV T
Sbjct: 569 LMHAALRQILGTHVAQKGSLVNDKVLRFDFSHNEAMKPSEIRAVEDLVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY+DRVRV+S+     G  S+ LCGGTH S TG+I L  IV
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  + ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATLHAESDRLSDIAQLLKGDSQNLGEKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|271501699|ref|YP_003334725.1| alanyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270345254|gb|ACZ78019.1| alanyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 875

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/910 (42%), Positives = 542/910 (59%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQIVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWELLTSSQWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYASDDEAYDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLFK LI  + +V G      N  + RVI DH+RS +FLIADG++
Sbjct: 243 RISAVLQHVNSNYDIDLFKTLIAEAARVVGTDD--LNNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  EL + + L+E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGTLIEVMGAAGEELKRQQSLVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL+LLD  +  L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KNEEEQFARTLERGLLLLDEEIKQLK-GDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E QR RAR       +      + SL     +T F GY+          
Sbjct: 420 -VDEAGFERAMEAQRQRAR------DASGFGADYNSLIRVDASTSFCGYERTEQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V AI +QGE V+E  +G    V+  +TPFY E+GGQ+GD 
Sbjct: 467 -----------------QSTVVAIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +       + D QK  +    H   + +G+LR    +   +D+  R ++ +NHSATH
Sbjct: 510 GELVSAAACFSVADAQKYGQ-AIGHIGSLAQGVLRVNDKVNAVVDHVRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +   +++ +ED VN  I +NL + T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDNYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLSIDT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A A GA AL G KY++ VRV+S+     G  S  LCGGTH   TG+I L  IV
Sbjct: 629 DVMALDAARAKGAMALFGEKYDEHVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A   L  Q + L  +   +K     +  +V  + E  R L+
Sbjct: 684 SESGTAAGIRRIEAVTGENAIVALHEQSDVLHEVTQLVKGDSNTLADKVRSLLERNRGLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ S       +I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQQAAQESSSLSSKAKEINGVKLLVTQLNNVEPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S++  VT++L +R  A +L    A  + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-STVADGKVSLIAGVTKELTNRVKAGELIGFVANQV-GGKGGGRPDMAQAGGSDVDALP 861

Query: 887 QAIAGVASFL 896
            A+  V +++
Sbjct: 862 SALTSVEAWV 871


>gi|205371825|sp|Q89I89|SYA_BRAJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 892

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/911 (50%), Positives = 615/911 (67%), Gaps = 41/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL FF +NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSTFLNFFAENGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW L+TK+F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWKLITKDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY  D+EA  LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 NKDKLLVTVYHTDDEAHGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA ++Q 
Sbjct: 181 DHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERVDLPRPSIDTGMGLERMACIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI A+    G       + + RVI DHLRSS+FL++DG+LP+NEGRGY
Sbjct: 241 VDSVFETDLFRHLIDATASALGSGPNEQTVASFRVIADHLRSSAFLVSDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPEL++A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMHRLVWALVREMGQAYPELMRAEKLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL +LD   + L K ++ +GDVAF LYDT+G PLD+ QD L +RG  G+D  +F 
Sbjct: 361 KTLTRGLAILDEKSASLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRG-IGVDQSAFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++AR    G G   +E IWF L+EK GAT+F+GY+                  
Sbjct: 420 DAMERQKAKARESWKGSGEAASEAIWFPLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G+      +G+   +V +QTPFYAE+GGQ+GDTG  +G+G 
Sbjct: 462 -----TESAEGVVSALVKDGQEAASLKAGETGALVLNQTPFYAESGGQVGDTGVLLGEGG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++TD QKK   +FVH   VE G L+   +L L +D+  R  +  +HSATHL+H AL 
Sbjct: 517 VKFRVTDTQKKLGDLFVHVGTVESGELKLGTALQLEVDHSRRSSIRAHHSATHLIHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS + PD LRFD  H KPIT+ EL  +ED  ND++ +N  V TR+M  ++
Sbjct: 577 QVLGDHIAQRGSMVAPDRLRFDFVHPKPITAEELARVEDIANDVVLENDEVTTRVMGVDE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           A  +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ +  
Sbjct: 637 AREAGARALFGEKYGDEVRVVSMGRTARERGANALGWSVELCGGTHVRRTGDIGLITLTG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ +G+RRIEA+TG  AR H        K+ A+ L+ S  +V  R+  + EE +KL+ 
Sbjct: 697 ESAVASGVRRIEALTGNYARKHANDTMALAKTAANELRTSIDDVPARITALMEERKKLER 756

Query: 773 IHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             +  + +L +               ++ DV  M+  +  ++ K+LKS+ D  +K+I SG
Sbjct: 757 ELSDARKKLAMGGGAAASNGAASGVREVGDVKLMARAVEGIEMKDLKSLADDGKKQIGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ +VG++ + KA +++ VT DL  RFNAV+L R++++ LGG GGGGRP MAQ+GGP+G 
Sbjct: 817 VVAIVGVTGDGKAGIVVGVTADLTARFNAVNLVRVASEALGGKGGGGRPDMAQAGGPDGA 876

Query: 884 KADQAIAGVAS 894
           KA +A+A +  
Sbjct: 877 KAPEALAAIEK 887


>gi|306840334|ref|ZP_07473106.1| alanyl-tRNA synthetase [Brucella sp. BO2]
 gi|306289733|gb|EFM60922.1| alanyl-tRNA synthetase [Brucella sp. BO2]
          Length = 885

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/893 (53%), Positives = 623/893 (69%), Gaps = 36/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG   +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 AAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V +G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 ITEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL+   
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  + +L +         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869


>gi|157374457|ref|YP_001473057.1| alanine--tRNA ligase [Shewanella sediminis HAW-EB3]
 gi|205830208|sp|A8FSV6|SYA_SHESH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157316831|gb|ABV35929.1| Alanine--tRNA ligase [Shewanella sediminis HAW-EB3]
          Length = 874

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/909 (41%), Positives = 546/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWNFLTQELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EA+ +W K  G+ A+ +IRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDDEAYDIWTKEIGVPAENLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG P    E+G+R+IEIWN+VFMQ+ +Q+  E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSDGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++  +        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILSVTD--LENKSLRVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG ++     L+P L   MG A   L+  + ++E++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGASDSFFYKLVPTLIEVMGDAAKGLVATQAIVEKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LDG L+ L   ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDGALNALK-GDVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G  E  +    +    T F GY  L           
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GQFETDYNDSLKIDELTHFSGYTELTAP-------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            + AI   GE V    +G +  +V D TPFY E+GGQ GD G  
Sbjct: 466 ---------------GKITAIYMAGESVNSLSAGDEAVIVLDSTPFYGESGGQCGDRGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              GI   + D QK  + +      +  G L    SL   +D + R +  +NHS THLLH
Sbjct: 511 SAKGIEFDVKDTQKYGQAVGHQ-GALTSGTLSVGDSLEANVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS +  + LRFD +H + +   ELK++ED VN  I +N  +   +M
Sbjct: 570 AALRQLLGTHVTQKGSLVDSERLRFDFSHFEGVKPEELKAVEDLVNTQIRRNHKLSAEVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A   GA AL G KY D VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DMDQAKEKGAMALFGEKYTDEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++ GQ  +L   A+ LK    +VV +++   +  + L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAGQKAELDQAAALLKADSASVVSKLKAQLDRTKLLEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +L             ++  VN +   +  V++  L+ + D L++K+ SGI++L G
Sbjct: 745 SQLKDKLAAATSADLAGEAQQVNGVNVLVKKLDGVEAGALRGLQDELKQKLGSGIVVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ + K ++++ VT+DL  +  A +L    A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 IAGDAKVNLIVGVTKDLTSKVKAGELVASIASQV-GGKGGGRPDMAQAGGSQPENLDSAL 862

Query: 890 AGVASFLKK 898
             V  +L +
Sbjct: 863 EQVIPWLTE 871


>gi|209549551|ref|YP_002281468.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535307|gb|ACI55242.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 884

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 492/896 (54%), Positives = 631/896 (70%), Gaps = 38/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI A E+  G K       +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLIGAIEETMGAK--AKGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELVRAEALISETLKLEEGRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + LGK ++L+G+ AFKLYDT+G PLD+ QD L AR   G+DI  F 
Sbjct: 359 KTLERGLSLLSDATTDLGKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE IWF L+EK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYD------------------ 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV++G   EE  +G KV++V +QTPFY E+GGQ+GDTG    D  
Sbjct: 460 -----TETAEGVVQAIVREGAAAEEVKAGDKVQIVVNQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R++I+D QKK EG+FVH  +V  G  +   ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 RIEISDTQKKGEGLFVHSGVVVEGAFKAGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN  V TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSAVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+     G      +S  LCGGTHVS+TG+I L+ ++ ES
Sbjct: 635 IEEGAMALFGEKYGDEVRVVSMGTGVHGAKSNKPYSVELCGGTHVSATGQIGLIRVLGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E RKL+   
Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALMDERRKLEKEL 754

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  K +L +         +  ++A V F+   IS VD K+LK + D  +  I SG++ L+
Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKFLGKSISGVDPKDLKGLADDGKTSIGSGVVTLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           G+S + KAS ++ VT DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 815 GVSDDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870


>gi|87122506|ref|ZP_01078386.1| alanyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86162299|gb|EAQ63584.1| alanyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 871

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/908 (41%), Positives = 542/908 (59%), Gaps = 54/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R +FL++F+   H+++ SSSLIP NDPTL+FTN+GMV FK++F G +   Y   
Sbjct: 1   MKSSELRQSFLKYFESKQHQVVDSSSLIPGNDPTLLFTNAGMVQFKDVFLGMDDRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT+   L 
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTQVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L +TVY +D+EA+ +W K  G+  D+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 121 TEKLLVTVYADDDEAWDIWAKKIGVPEDRIVRIGDNKGARYASDNFWQMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PGS  E+G+R+IEIWN+VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFYDHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRDANGVMNPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+ID+F++LI+A+ +V G         + RVI DH+RS SF+I DGI+P+
Sbjct: 241 AAILQGVHSNYEIDIFQNLIKAAAKVVGTDD--LEAQSLRVIADHIRSCSFMIVDGIVPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     L+  L TEMG AYP+L +    I+  L  
Sbjct: 299 NEGRGYVLRRIVRRAIRHGHKLGQKQAFFNTLVADLVTEMGDAYPDLAKLADRIQAILLK 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F KTL++G+ +LD  +  LG  +I++G+  FKLYDT+G P D+  D+   R    I
Sbjct: 359 EEEQFAKTLEQGMRILDDAIGELGDSKIISGETVFKLYDTYGFPADLTNDVARER-HLEI 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR+RAR+ S      +          + G T+F GY  L          
Sbjct: 418 DEKGFERAMEEQRNRARSASQFTMDMSGSI-------EAGDTEFTGYSHLVD-------- 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             ++A++  GE VE   +GQ   V+  QTPFY E+GGQ+GD G 
Sbjct: 463 ---------------ECEIEALILDGEKVESLTAGQSGIVILKQTPFYGESGGQVGDQGW 507

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G+G          K     +HH  +  G +     L  T+D   R    +NHSATHL+
Sbjct: 508 LRGNGA--FSVTNTTKQGKTHLHHGELREGSITLGDKLTATVDASLRAATGLNHSATHLM 565

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G HV Q GS    + LRFD +H + +T+AE++ +ED VN+ I  N  V+T  
Sbjct: 566 HEALRRVVGDHVHQKGSLCDAERLRFDFSHFEGVTAAEIEQVEDMVNEQIRLNHEVLTEE 625

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+ +VRV+++       +S  LCGGTHV  TG+I +  IV+E
Sbjct: 626 MDIESAKERGAMALFGEKYDSQVRVLTMGS----EYSIELCGGTHVKRTGDIGVFKIVAE 681

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG+RRIEAITG+ A  +    ++ ++ +A+ +K ++ N++ +V  + ++ R LQ  
Sbjct: 682 SGIAAGVRRIEAITGKVAIDYNRATEKSVQQVAALVKGNKENMIEKVTALSDQNRALQKE 741

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L  +  S        I     +   +   D K L+ ++D L+ K++S +I+L 
Sbjct: 742 LDVIKAKLAAQAGSDLASQAVDIDGGKLLVAQVDVEDPKALRDMLDELKSKLESAVILLA 801

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K S++  VT++L  +  A DL ++ A ++  G GGGRP MAQ+GG N     +A
Sbjct: 802 SV-NDSKVSLIAGVTKELTKKVKAGDLIKMVAPLV-DGRGGGRPDMAQAGGNNPAGLPEA 859

Query: 889 IAGVASFL 896
           +A V  ++
Sbjct: 860 LASVQPWV 867


>gi|190892008|ref|YP_001978550.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
 gi|190697287|gb|ACE91372.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 884

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/896 (54%), Positives = 634/896 (70%), Gaps = 38/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS+ E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ L  A E   G+K       +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLTGAIEDAAGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR   G+DI  F 
Sbjct: 359 KTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF L+EK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYD------------------ 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG    D  
Sbjct: 460 -----TEAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QKK EG+FVH   V  G  +T  ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       +    +S  LCGGTHVS+TG+I L+ I+ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG+ AR++L  QD+++K+LA+ LKV    V+ RVE + +E RKL+   
Sbjct: 695 AVGAGVRRLEAVTGESARAYLAEQDDRVKTLAASLKVQPSEVLSRVETLIDERRKLEREL 754

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  K +L +         +  ++A V ++   ++ VD K+LK + D  +  I SGI+ L+
Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           G+S++ KAS ++ VT DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 815 GVSEDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870


>gi|27380861|ref|NP_772390.1| alanyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 gi|27354027|dbj|BAC51015.1| alanyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 894

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/911 (50%), Positives = 615/911 (67%), Gaps = 41/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL FF +NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 3   MSGVNEIRSTFLNFFAENGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW L+TK+F L
Sbjct: 63  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWKLITKDFGL 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY  D+EA  LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 123 NKDKLLVTVYHTDDEAHGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 182

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA ++Q 
Sbjct: 183 DHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERVDLPRPSIDTGMGLERMACIMQG 242

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI A+    G       + + RVI DHLRSS+FL++DG+LP+NEGRGY
Sbjct: 243 VDSVFETDLFRHLIDATASALGSGPNEQTVASFRVIADHLRSSAFLVSDGVLPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPEL++A+ LIEETLR E+ RF 
Sbjct: 303 VLRRIMRRAMRHAQLLGAKEPLMHRLVWALVREMGQAYPELMRAEKLIEETLRLEETRFR 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL +LD   + L K ++ +GDVAF LYDT+G PLD+ QD L +RG  G+D  +F 
Sbjct: 363 KTLTRGLAILDEKSASLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRG-IGVDQSAFT 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++AR    G G   +E IWF L+EK GAT+F+GY+                  
Sbjct: 422 DAMERQKAKARESWKGSGEAASEAIWFPLREKLGATEFLGYE------------------ 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G+      +G+   +V +QTPFYAE+GGQ+GDTG  +G+G 
Sbjct: 464 -----TESAEGVVSALVKDGQEAASLKAGETGALVLNQTPFYAESGGQVGDTGVLLGEGG 518

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++TD QKK   +FVH   VE G L+   +L L +D+  R  +  +HSATHL+H AL 
Sbjct: 519 VKFRVTDTQKKLGDLFVHVGTVESGELKLGTALQLEVDHSRRSSIRAHHSATHLIHEALR 578

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS + PD LRFD  H KPIT+ EL  +ED  ND++ +N  V TR+M  ++
Sbjct: 579 QVLGDHIAQRGSMVAPDRLRFDFVHPKPITAEELARVEDIANDVVLENDEVTTRVMGVDE 638

Query: 659 AIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           A  +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ +  
Sbjct: 639 AREAGARALFGEKYGDEVRVVSMGRTARERGANALGWSVELCGGTHVRRTGDIGLITLTG 698

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ +G+RRIEA+TG  AR H        K+ A+ L+ S  +V  R+  + EE +KL+ 
Sbjct: 699 ESAVASGVRRIEALTGNYARKHANDTMALAKTAANELRTSIDDVPARITALMEERKKLER 758

Query: 773 IHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             +  + +L +               ++ DV  M+  +  ++ K+LKS+ D  +K+I SG
Sbjct: 759 ELSDARKKLAMGGGAAASNGAASGVREVGDVKLMARAVEGIEMKDLKSLADDGKKQIGSG 818

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ +VG++ + KA +++ VT DL  RFNAV+L R++++ LGG GGGGRP MAQ+GGP+G 
Sbjct: 819 VVAIVGVTGDGKAGIVVGVTADLTARFNAVNLVRVASEALGGKGGGGRPDMAQAGGPDGA 878

Query: 884 KADQAIAGVAS 894
           KA +A+A +  
Sbjct: 879 KAPEALAAIEK 889


>gi|324111325|gb|EGC05307.1| alanyl-tRNA synthetase [Escherichia fergusonii B253]
          Length = 876

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +S  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LSGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|325579107|ref|ZP_08149063.1| alanine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159342|gb|EGC71476.1| alanine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 874

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 545/911 (59%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDNEAYDIWHKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI  + +V G         + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKTAEVVGTTD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKEVKEKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ +  D +L+G+VAFKLYDT+G PLD+  D+   R  
Sbjct: 359 LRLEEEQFARTLERGLSLLDDALAQVK-DGVLSGEVAFKLYDTYGFPLDLTADVCRERD- 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RA++ S           + ++    G T+F GY          
Sbjct: 417 IAIDEAGFEREMEAQRLRAQSASQFGM------DYNNVIRVEGETKFEGYTESESL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVTALFHDGKSVESITAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     GI+  + D QK    +F H   +E+G L+   ++   +D   R Q S+NHSAT
Sbjct: 508 SGYLTSQGIQFNVKDTQKYG-QVFGHIGELEQGTLKVGQTVNAVVDAARRHQTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS ++   LRFD  H + IT A+L  IE  VN  + +N  V 
Sbjct: 567 HLLHAALRQVLGHHVVQKGSLVSDTALRFDFAHPEAITKAQLNEIETLVNQKVRENFVVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M+ E A A GA AL G KY D VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDVMDIEAAKAKGAMALFGEKYADVVRVLTM-----GDFSVELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+E+++ AG+RRIEA+TG+ A + L  Q   L   A   K     +V +++++ ++ +K 
Sbjct: 682 VAETAVAAGVRRIEAVTGENAMNWLHNQQRILTQSADLFKSDVNTLVEKIQQLQDKAKKA 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI DV+ + H +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDLVKSAVKINDVSVIVHQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   I  + K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 VFASIL-DDKVNLVVGVTSDLTTKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFL 896
           + A+    ++L
Sbjct: 860 NLALTVAQNWL 870


>gi|33602167|ref|NP_889727.1| alanyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|41018190|sp|Q7WHL6|SYA_BORBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33576605|emb|CAE33683.1| alanyl-tRNA synthetase [Bordetella bronchiseptica RB50]
          Length = 874

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/911 (43%), Positives = 547/911 (60%), Gaps = 53/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FFQ  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y+  
Sbjct: 1   MKSSEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYRLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI A+ + TG+K   +N  + +VI DH+R+ +FLI DGI+P+
Sbjct: 241 AAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADN--SLKVIADHIRACAFLIVDGIIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL Q    + + LR 
Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERFG+TL+ G+ +LDG L+ + K + L+G   F LYDT+G P+D+  DI   RG   +
Sbjct: 359 EEERFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICRERG-VEV 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F  A++ QR +ARA      +         L  +   T+F GY+ L  S       
Sbjct: 418 DMAGFEAAMQRQREQARAAGKFKMAEG-------LSYEGAETRFEGYESLELSGV----- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+  +G  VE+  +GQ   VV D TPFYAE+GGQ+GDTG 
Sbjct: 466 -----------------KVTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGL 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D  K   G+F HH  +E G L+   +L+  +D   R +   NHSATHL+
Sbjct: 509 LEAGGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     ++
Sbjct: 569 HKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKV 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  +VSE
Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVRRTGDIGLFKVVSE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEAITG  A + +  Q+  L+  A  L+     +  R+ ++ E+ + L+  
Sbjct: 683 GGVAAGVRRIEAITGDNALAWVQDQNALLQRAAGVLRAPAHELPERIVQVQEQLKALEKE 742

Query: 774 HAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             + + +L           +  ++  +  ++  I +VD K L+ ++D L+ +++  +++L
Sbjct: 743 LEQARTKLAASAGNDLAATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              S + K S++  VT DL  R  A DL    A  +GG G GGRP MA  GG +      
Sbjct: 803 AAGSADGKISLVGGVTADLTGRIKAGDLVGFVAGQVGGKG-GGRPDMAMGGGTDLAALPA 861

Query: 888 AIAGVASFLKK 898
           A+A V  ++ +
Sbjct: 862 AVASVQKWVDE 872


>gi|331654174|ref|ZP_08355174.1| alanine--tRNA ligase [Escherichia coli M718]
 gi|331047556|gb|EGI19633.1| alanine--tRNA ligase [Escherichia coli M718]
          Length = 876

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVTQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|251788614|ref|YP_003003335.1| alanyl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247537235|gb|ACT05856.1| alanyl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 875

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/910 (42%), Positives = 543/910 (59%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIIYAWELLTSSEWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYDIWANEVGVPHERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF  LI  + +V G      N  + RVI DH+RS +FLIADG++
Sbjct: 243 RISAVLQHVNSNYDIDLFSTLIAEAARVVGTDD--LNNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + + L+E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGPLVDVMGSAAEELKRQQSLVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL+LLD  +  L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KNEEEQFARTLERGLLLLDEEIKQLK-GDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E QR RAR       +      + SL     +T F GY+          
Sbjct: 420 -VDEAGFERAMEAQRQRAR------DASGFGADYNSLIRVDESTTFCGYERTEQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V AI +QGE V+E  +G    V+  +TPFY E+GGQ+GD 
Sbjct: 467 -----------------QSTVVAIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R  + D QK  +    H   + +G+LR    +   +D+  R ++ +NHSATH
Sbjct: 510 GTLVSAAARFSVVDAQKYGQ-AIGHVGSLVQGVLRVNDKVDAAVDHVRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +   +++ +ED VN  I +NLPV T
Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDNYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLPVDT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A A GA AL G KY+++VRV+S+     G  S  LCGGTH   TG+I L  IV
Sbjct: 629 DVMALDAARAKGAMALFGEKYDEQVRVLSM-----GDFSIELCGGTHARRTGDIGLFQIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A   L  Q + L  +   +K    N+  +V  + E  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGENAIVALHQQSDVLHEVTQLVKGDSNNLADKVRSLLERTRGLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ S        I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQQAAQESSSLSGKAKDINGVKLLVTQLNNVEPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S++  VT++L DR  A +L    A  + GG GGGRP MAQ+GG +     
Sbjct: 804 L-STVADGKVSLIAGVTKELTDRVKAGELVGFVANQV-GGKGGGRPDMAQAGGSDVGALP 861

Query: 887 QAIAGVASFL 896
            A+  + +++
Sbjct: 862 SALTSIEAWV 871


>gi|323978695|gb|EGB73777.1| alanyl-tRNA synthetase [Escherichia coli TW10509]
          Length = 876

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGVNFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|306844100|ref|ZP_07476694.1| alanyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275543|gb|EFM57275.1| alanyl-tRNA synthetase [Brucella sp. BO1]
          Length = 885

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/893 (53%), Positives = 624/893 (69%), Gaps = 36/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSEDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG   +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRNGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V +G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL+   
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  + +L +         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869


>gi|253772448|ref|YP_003035279.1| alanyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162628|ref|YP_003045736.1| alanyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|242378254|emb|CAQ33029.1| alanyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253323492|gb|ACT28094.1| alanyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974529|gb|ACT40200.1| alanyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253978696|gb|ACT44366.1| alanyl-tRNA synthetase [Escherichia coli BL21(DE3)]
          Length = 876

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|170682603|ref|YP_001744844.1| alanyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|205830086|sp|B1LQ15|SYA_ECOSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170520321|gb|ACB18499.1| alanyl-tRNA synthetase [Escherichia coli SMS-3-5]
          Length = 876

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLATGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|256113755|ref|ZP_05454559.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|265995116|ref|ZP_06107673.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|262766229|gb|EEZ12018.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
          Length = 885

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/893 (53%), Positives = 622/893 (69%), Gaps = 36/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+A E+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRALEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG   +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL+   
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  + +L +         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869


>gi|17987072|ref|NP_539706.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|23502078|ref|NP_698205.1| alanyl-tRNA synthetase [Brucella suis 1330]
 gi|62290112|ref|YP_221905.1| alanyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82700035|ref|YP_414609.1| alanyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308]
 gi|161619156|ref|YP_001593043.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163843466|ref|YP_001627870.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|189024350|ref|YP_001935118.1| Alanyl-tRNA synthetase, class Iic [Brucella abortus S19]
 gi|225627671|ref|ZP_03785708.1| alanyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|237815619|ref|ZP_04594616.1| alanyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|254689421|ref|ZP_05152675.1| alanyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254693906|ref|ZP_05155734.1| alanyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|254697556|ref|ZP_05159384.1| alanyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701941|ref|ZP_05163769.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|254704486|ref|ZP_05166314.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|254706618|ref|ZP_05168446.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|254710272|ref|ZP_05172083.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|254730450|ref|ZP_05189028.1| alanyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|256031766|ref|ZP_05445380.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256044851|ref|ZP_05447755.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061281|ref|ZP_05451431.1| alanyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|256159936|ref|ZP_05457654.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256255167|ref|ZP_05460703.1| alanyl-tRNA synthetase [Brucella ceti B1/94]
 gi|256257667|ref|ZP_05463203.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|256369625|ref|YP_003107135.1| alanyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260168900|ref|ZP_05755711.1| alanyl-tRNA synthetase [Brucella sp. F5/99]
 gi|260546661|ref|ZP_05822400.1| alanyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260565546|ref|ZP_05836030.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260566269|ref|ZP_05836739.1| alanyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260754944|ref|ZP_05867292.1| alanine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|260758160|ref|ZP_05870508.1| alanine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260761986|ref|ZP_05874329.1| alanine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883954|ref|ZP_05895568.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|261214196|ref|ZP_05928477.1| alanine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
 gi|261222364|ref|ZP_05936645.1| alanyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261314078|ref|ZP_05953275.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261317834|ref|ZP_05957031.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261325289|ref|ZP_05964486.1| alanyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261752508|ref|ZP_05996217.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261755167|ref|ZP_05998876.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|261758391|ref|ZP_06002100.1| alanyl-tRNA synthetase [Brucella sp. F5/99]
 gi|265988865|ref|ZP_06101422.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|265991279|ref|ZP_06103836.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265998329|ref|ZP_06110886.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|297248508|ref|ZP_06932226.1| alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|54039648|sp|P67009|SYA_BRUSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|54042023|sp|P67008|SYA_BRUME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|75496699|sp|Q57CU0|SYA_BRUAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123547531|sp|Q2YRU8|SYA_BRUA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205829996|sp|A9M5L7|SYA_BRUC2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205829998|sp|B0CGZ9|SYA_BRUSI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|17982730|gb|AAL51970.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|23348036|gb|AAN30120.1| alanyl-tRNA synthetase [Brucella suis 1330]
 gi|62196244|gb|AAX74544.1| AlaS, alanyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82616136|emb|CAJ11179.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Brucella
           melitensis biovar Abortus 2308]
 gi|161335967|gb|ABX62272.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163674189|gb|ABY38300.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|189019922|gb|ACD72644.1| Alanyl-tRNA synthetase, class Iic [Brucella abortus S19]
 gi|225617676|gb|EEH14721.1| alanyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|237788917|gb|EEP63128.1| alanyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|255999787|gb|ACU48186.1| alanyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260095711|gb|EEW79588.1| alanyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260151614|gb|EEW86708.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260155787|gb|EEW90867.1| alanyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260668478|gb|EEX55418.1| alanine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260672418|gb|EEX59239.1| alanine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675052|gb|EEX61873.1| alanine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|260873482|gb|EEX80551.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260915803|gb|EEX82664.1| alanine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
 gi|260920948|gb|EEX87601.1| alanyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261297057|gb|EEY00554.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261301269|gb|EEY04766.1| alanyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261303104|gb|EEY06601.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261738375|gb|EEY26371.1| alanyl-tRNA synthetase [Brucella sp. F5/99]
 gi|261742261|gb|EEY30187.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261744920|gb|EEY32846.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|262552797|gb|EEZ08787.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|263002063|gb|EEZ14638.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264661062|gb|EEZ31323.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|297175677|gb|EFH35024.1| alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
          Length = 885

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/893 (53%), Positives = 623/893 (69%), Gaps = 36/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG   +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL+   
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  + +L +         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869


>gi|306812426|ref|ZP_07446624.1| alanyl-tRNA synthetase [Escherichia coli NC101]
 gi|305854464|gb|EFM54902.1| alanyl-tRNA synthetase [Escherichia coli NC101]
 gi|320194836|gb|EFW69465.1| Alanyl-tRNA synthetase [Escherichia coli WV_060327]
          Length = 876

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|331648414|ref|ZP_08349502.1| alanine--tRNA ligase [Escherichia coli M605]
 gi|281179700|dbj|BAI56030.1| alanyl-tRNA synthetase [Escherichia coli SE15]
 gi|331042161|gb|EGI14303.1| alanine--tRNA ligase [Escherichia coli M605]
          Length = 876

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 561/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFDAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAVGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|330908728|gb|EGH37242.1| alanyl-tRNA synthetase [Escherichia coli AA86]
          Length = 876

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFDAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAVGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRVVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|251793474|ref|YP_003008203.1| alanyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247534870|gb|ACS98116.1| alanyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
          Length = 874

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/912 (42%), Positives = 549/912 (60%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FKN+F G EK  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHYGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ DEEA+K+W    G+ A++IIRI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDEEAYKIWHDEIGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+FK LI    ++TG K    N  + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFKTLIAKVAELTGEKD--LNNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG TE     L+P L   M  A  ++ + +  +E+ 
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIEVMAQAGEDVKKHQATVEKF 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+++  D +L+G VAFKLYDT+G PLD+  D+   RG 
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALANVK-DNVLSGKVAFKLYDTYGFPLDLTADVCRERG- 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +  QR RA++ S           + ++    G T+F GY          
Sbjct: 417 IAIDEAGFEREMASQRVRAQSASQFGM------DYNNVIRVDGTTRFEGYTESESL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ VE   +GQ+  V+ + TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVTALFHDGKAVESITAGQRAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G+G    + D QK    +F H   + +G L    S+   +D   R+Q+S+NHSAT
Sbjct: 508 IGRLEGNGFIFDVKDTQKYG-QVFGHIGELTQGSLSVGQSVNAVVDDVRRQQISLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++   LRFD  H + I+  +L  +E  VN  +  N PV 
Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDALLRFDFAHHEAISKEQLAEVERIVNQQVRANNPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T  M  + A A GA AL G KY+++VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TEAMALDAAKAKGAMALFGEKYSEQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+E+++ AGIRRIEAITG+ A   L  Q   L   A  LK    ++  ++  + ++++K+
Sbjct: 682 VTETAVAAGIRRIEAITGETAIEWLQHQQTLLNQSADLLKSDVNSITDKISLLQDKFKKV 741

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ +   +  +++K L+S++D+L+ ++ S +I
Sbjct: 742 EKELQTLKEKAALQAGNDLAQSAVKIHGVSVIVQQLDGIEAKSLRSMVDSLKNQLGS-VI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++     ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 801 VVFASVLDEKVNLIVGVTGDLTAKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPQNI 859

Query: 886 DQAIAGVASFLK 897
            +A++  + +LK
Sbjct: 860 GKALSVCSDWLK 871


>gi|292491239|ref|YP_003526678.1| alanyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291579834|gb|ADE14291.1| alanyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 873

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/906 (42%), Positives = 550/906 (60%), Gaps = 50/906 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +R  FL++F+  GHE++PSS L+P NDPTL+FTN+GMV FK++F G+E   Y+ 
Sbjct: 1   MKSSAELRKIFLDYFRHQGHEIVPSSPLVPANDPTLLFTNAGMVQFKDVFLGRETRAYRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI   W LLT+   L
Sbjct: 61  AASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYGWALLTEVLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL+ITV+++D+EA  +W K  G+S ++  R    DNFWSM +TGPCGP SEIF+D G
Sbjct: 121 PPERLWITVFEDDDEAANIWLKEIGVSPERFARCGAEDNFWSMGDTGPCGPSSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS E EG+RY EIWNLVFMQ+++  +     LPK S+DTGMGLER+A V+Q 
Sbjct: 181 SGIAGGPPGSPEQEGDRYTEIWNLVFMQYDRNKEGHLSPLPKPSVDTGMGLERLAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF++LI A   ++G++       + RVI DH+RS +FLI DG+ P+NEGRGY
Sbjct: 241 VHDNYDIDLFRNLITAITALSGIQ--NQEPTSLRVIADHIRSCAFLIVDGVQPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +P    L+  L  EMG AYPEL QA+  +E  L+ E+ERF 
Sbjct: 299 VLRRIIRRAIRHGHKLGLRDPFFYQLVQPLAVEMGEAYPELPQAQSRVERMLKLEEERFN 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+GL +L+  + +L   +++ G+  F+LYDT G P+D+  DI   RGL  +D+  F 
Sbjct: 359 ETLDQGLKILEQDIENLS-GQVIPGETVFRLYDTFGFPVDLTADIARERGLT-LDMRGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +QR RARA S        +       +    T+FIGY+ LRG              
Sbjct: 417 HAMAKQRERARAASRFKIEYGPD------LQLDLETEFIGYEHLRG-------------- 456

Query: 480 PPIDLTNGVSSIVKAIVQ---QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       V A+ +     E VE+  +G+K  VV D+TPFYAEAGGQ+GD G    
Sbjct: 457 ---------EGQVTALFRVAETTEAVEQLSAGEKGIVVLDRTPFYAEAGGQVGDQGTLRA 507

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G    +TD QK+    + H   V  G LR    +   ++  +R    +NHSATHLLH +
Sbjct: 508 PGGLFNVTDTQKQGA-AYAHLGEVRLGELRVGDLIQAEVERAHRAPTRLNHSATHLLHAS 566

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +T D LRFD +H + +   +L+ IE  VN  I  +LPV T+IM  
Sbjct: 567 LRQVLGEHVAQKGSLVTADRLRFDFSHFEALEPEQLRQIERLVNAQIRADLPVETQIMPL 626

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+ +G  AL G KY ++VRV+ +     G  S  LCGGTHV  TG I L  I++E+ I
Sbjct: 627 QEALDAGVVALFGEKYGEQVRVLRM-----GNFSVELCGGTHVDRTGNIGLFKIINETGI 681

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AGIRRIEA+TG+ A   +   + +L+++A  LK S+ +V+ ++E + ++ R+ +     
Sbjct: 682 AAGIRRIEAVTGEAALRWVEENEARLEAVAGLLKASRESVIDKLELLQQQARQQEKEIQS 741

Query: 777 RKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L             +I  V  ++  I  VD K L++  D L+ K+ +  I+L G  
Sbjct: 742 LKARLASAGGSDLSAQAQEIQGVKVLAARIDGVDIKTLRNTADQLKSKLATAAIVL-GTV 800

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT++ +++  A DL    A+ + GG GGGRP MAQ+GG + +K D A+  
Sbjct: 801 VEGKVVLIAGVTKNAINQIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGKDPDKLDAALKS 859

Query: 892 VASFLK 897
           V  +++
Sbjct: 860 VPEWVE 865


>gi|323935749|gb|EGB32063.1| alanyl-tRNA synthetase [Escherichia coli E1520]
          Length = 876

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYSSDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|33592894|ref|NP_880538.1| alanyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|41018186|sp|Q7VXE1|SYA_BORPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33572542|emb|CAE42122.1| alanyl-tRNA synthetase [Bordetella pertussis Tohama I]
          Length = 874

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/911 (43%), Positives = 545/911 (59%), Gaps = 53/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FFQ  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y+  
Sbjct: 1   MKSSEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI A+ + TG+K   +N  + +VI DH+R+ +FLI DGI+P+
Sbjct: 241 AAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADN--SLKVIADHIRACAFLIVDGIIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG T+     L+P L  EMG AYPEL Q    + + LR 
Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKSFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERFG+TL+ G+ +LDG L+ + K + L+G   F LYDT+G P+D+  DI   R    +
Sbjct: 359 EEERFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICRER-EVEV 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F  A++ QR +ARA      +         L  +   T+F GY+ L  S       
Sbjct: 418 DMAGFEAAMQRQREQARAAGKFKMAEG-------LSYEGAETRFEGYENLELSGV----- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+  +G  VE+  +GQ   VV D TPFYAE+GGQ+GDTG 
Sbjct: 466 -----------------KVTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGL 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D  K   G+F HH  +E G L+   +L+  +D   R +   NHSATHL+
Sbjct: 509 LEAGGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     ++
Sbjct: 569 HKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKV 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  +VSE
Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVRRTGDIGLFKVVSE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEAITG  A + +  Q+  L+  A  L+     +  R+ ++ E+ + L+  
Sbjct: 683 GGVAAGVRRIEAITGDNALAWVQDQNALLQRAAGVLRAPAHELPERIAQVQEQLKALEKE 742

Query: 774 HAKRKLQLNVE------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             + + +L           +  ++  +  ++  I +VD K L+ ++D L+ +++  +++L
Sbjct: 743 LEQARTKLAASAGNDLVATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              S + K S++  VT DL  R  A DL    A  +GG G GGRP MA  GG +      
Sbjct: 803 AAGSADGKISLVGGVTADLTGRIKAGDLVGFVAGQVGGKG-GGRPDMAMGGGTDLAALPA 861

Query: 888 AIAGVASFLKK 898
           A+A V  ++ +
Sbjct: 862 AVASVQKWVDE 872


>gi|293415946|ref|ZP_06658586.1| alanyl-tRNA synthetase [Escherichia coli B185]
 gi|331684309|ref|ZP_08384901.1| alanine--tRNA ligase [Escherichia coli H299]
 gi|291432135|gb|EFF05117.1| alanyl-tRNA synthetase [Escherichia coli B185]
 gi|331077924|gb|EGI49130.1| alanine--tRNA ligase [Escherichia coli H299]
          Length = 876

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|157162143|ref|YP_001459461.1| alanyl-tRNA synthetase [Escherichia coli HS]
 gi|218690819|ref|YP_002399031.1| alanyl-tRNA synthetase [Escherichia coli ED1a]
 gi|227888232|ref|ZP_04006037.1| alanyl-tRNA synthetase [Escherichia coli 83972]
 gi|331658802|ref|ZP_08359744.1| alanine--tRNA ligase [Escherichia coli TA206]
 gi|205830083|sp|A8A3H4|SYA_ECOHS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157067823|gb|ABV07078.1| alanyl-tRNA synthetase [Escherichia coli HS]
 gi|218428383|emb|CAR09311.2| alanyl-tRNA synthetase [Escherichia coli ED1a]
 gi|227834501|gb|EEJ44967.1| alanyl-tRNA synthetase [Escherichia coli 83972]
 gi|307554671|gb|ADN47446.1| alanyl-tRNA synthetase [Escherichia coli ABU 83972]
 gi|331053384|gb|EGI25413.1| alanine--tRNA ligase [Escherichia coli TA206]
          Length = 876

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|294852536|ref|ZP_06793209.1| alanyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
 gi|294821125|gb|EFG38124.1| alanyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
          Length = 885

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/893 (53%), Positives = 623/893 (69%), Gaps = 36/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGLAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG   +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVANQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL+   
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  + +L +         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869


>gi|110642817|ref|YP_670547.1| alanyl-tRNA synthetase [Escherichia coli 536]
 gi|123147797|sp|Q0TEI3|SYA_ECOL5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110344409|gb|ABG70646.1| alanyl-tRNA synthetase [Escherichia coli 536]
          Length = 876

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    E+L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSERLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|16130604|ref|NP_417177.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|89109484|ref|AP_003264.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|170082274|ref|YP_001731594.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|188492036|ref|ZP_02999306.1| alanyl-tRNA synthetase [Escherichia coli 53638]
 gi|194439000|ref|ZP_03071084.1| alanyl-tRNA synthetase [Escherichia coli 101-1]
 gi|238901834|ref|YP_002927630.1| alanyl-tRNA synthetase [Escherichia coli BW2952]
 gi|254037736|ref|ZP_04871794.1| alanyl t-RNA synthetase [Escherichia sp. 1_1_43]
 gi|256024797|ref|ZP_05438662.1| alanyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|307139383|ref|ZP_07498739.1| alanyl-tRNA synthetase [Escherichia coli H736]
 gi|331643380|ref|ZP_08344511.1| alanine--tRNA ligase [Escherichia coli H736]
 gi|2507425|sp|P00957|SYA_ECOLI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830082|sp|B1XCM5|SYA_ECODH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1789048|gb|AAC75739.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|1800083|dbj|BAA16559.1| alanyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|169890109|gb|ACB03816.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|188487235|gb|EDU62338.1| alanyl-tRNA synthetase [Escherichia coli 53638]
 gi|194422121|gb|EDX38124.1| alanyl-tRNA synthetase [Escherichia coli 101-1]
 gi|226839360|gb|EEH71381.1| alanyl t-RNA synthetase [Escherichia sp. 1_1_43]
 gi|238859951|gb|ACR61949.1| alanyl-tRNA synthetase [Escherichia coli BW2952]
 gi|260448253|gb|ACX38675.1| alanyl-tRNA synthetase [Escherichia coli DH1]
 gi|309703056|emb|CBJ02388.1| alanyl-tRNA synthetase [Escherichia coli ETEC H10407]
 gi|315137304|dbj|BAJ44463.1| alanyl-tRNA synthetase [Escherichia coli DH1]
 gi|323941473|gb|EGB37656.1| alanyl-tRNA synthetase [Escherichia coli E482]
 gi|323960644|gb|EGB56270.1| alanyl-tRNA synthetase [Escherichia coli H489]
 gi|323971514|gb|EGB66748.1| alanyl-tRNA synthetase [Escherichia coli TA007]
 gi|331036851|gb|EGI09075.1| alanine--tRNA ligase [Escherichia coli H736]
          Length = 876

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|218547790|ref|YP_002381581.1| alanyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|218355331|emb|CAQ87938.1| alanyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
          Length = 876

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRKVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|323966841|gb|EGB62270.1| alanyl-tRNA synthetase [Escherichia coli M863]
          Length = 876

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGVNFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|218706191|ref|YP_002413710.1| alanyl-tRNA synthetase [Escherichia coli UMN026]
 gi|293406188|ref|ZP_06650114.1| alaS [Escherichia coli FVEC1412]
 gi|298381926|ref|ZP_06991523.1| alanyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|331664248|ref|ZP_08365154.1| alanine--tRNA ligase [Escherichia coli TA143]
 gi|218433288|emb|CAR14188.1| alanyl-tRNA synthetase [Escherichia coli UMN026]
 gi|284922633|emb|CBG35721.1| alanyl-tRNA synthetase [Escherichia coli 042]
 gi|291426194|gb|EFE99226.1| alaS [Escherichia coli FVEC1412]
 gi|298277066|gb|EFI18582.1| alanyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|331058179|gb|EGI30160.1| alanine--tRNA ligase [Escherichia coli TA143]
          Length = 876

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGTNFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|145300678|ref|YP_001143519.1| alanyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|205829973|sp|A4SS99|SYA_AERS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|142853450|gb|ABO91771.1| alanyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 874

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/910 (40%), Positives = 548/910 (60%), Gaps = 53/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR  FLE+F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   MSTSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWEFLTGTLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RL +TVY+ D+EAF +W    G+  ++I+RI  N       DNFW M++TGPCGPC+E
Sbjct: 123 KERLLVTVYETDDEAFNIWANEVGVPVERIVRIGDNKGAAFASDNFWQMSDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS  E+G+R+IEIWN+VFMQF +Q       LP+ S+DTGMGLER+
Sbjct: 183 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+ + ++ G      +  + RVI DH+RS +FLIADG++P+
Sbjct: 243 SAIMQGVHSNYEIDIFQALIKKAAEIVGTTD--LSNQSLRVIADHIRSCAFLIADGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ + R LG T+     L   L  +M     ELI    L++  LR 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGRKLGATDVFFYKLAAELAVQMKDVGAELIAQLPLVKRVLRI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TLDRGL+LL+ VL++LG  +++ G+V FKLYDT+G P D+  D++  R   GI
Sbjct: 361 EEEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVRER-EIGI 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN  +E+QR+RA+  S    +      +  + +    T F GY  L          
Sbjct: 420 DEEGFNAEMEKQRARAKEASSFGVN------YNEVLKLDFETPFTGYKQLSQKTS----- 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V  I + G  V   ++G++  VV  +TPFYAE+GGQ+GD G 
Sbjct: 469 ------------------VVGIYKDGVEVNGLIAGEEAVVVLAETPFYAESGGQVGDCGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     +TD QK  + I      +E G L     +   +D + R+ +++NHS THLL
Sbjct: 511 LKVDDGIFAVTDTQKAGKAIIHK-GYLELGTLEKGALVEAVVDGERRQAVALNHSVTHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL   LG HV+Q GS +  + +RFD +H + +T A ++ +E+ VN  I  N  + T++
Sbjct: 570 HAALRQALGDHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNAQIRANHDIATQV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A ++GA AL G KY D VRVV +     G +S+ LCGGTH   TG+I    I++E
Sbjct: 630 MDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIAE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG+RRIEA+TG+ A   +    E+++  A+ +K  Q ++  +V +I ++ + ++  
Sbjct: 685 SGIAAGVRRIEAVTGKGAIDFMHQMGEQIEEAAALVKGDQFSIADKVRQILDKSKMMERE 744

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K +L  +  S       +I     +   +   D K L+ ++D L+ +++SG+++L 
Sbjct: 745 LEQLKAKLAAQAGSDLLSQVIEINGQKVLIAALEGADPKSLRGMLDELKNRMKSGVVLLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             S + K +++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 -TSSDDKVNLIAGVTSDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPAA 862

Query: 889 IAGVASFLKK 898
           +  V S+L++
Sbjct: 863 LQSVHSWLEE 872


>gi|215488016|ref|YP_002330447.1| alanyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|215266088|emb|CAS10508.1| alanyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
          Length = 876

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLNEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|91212055|ref|YP_542041.1| alanyl-tRNA synthetase [Escherichia coli UTI89]
 gi|117624928|ref|YP_853916.1| alanyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|218559685|ref|YP_002392598.1| alanyl-tRNA synthetase [Escherichia coli S88]
 gi|237706683|ref|ZP_04537164.1| alanyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|122422735|sp|Q1R804|SYA_ECOUT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830084|sp|A1AEN7|SYA_ECOK1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91073629|gb|ABE08510.1| alanyl-tRNA synthetase [Escherichia coli UTI89]
 gi|115514052|gb|ABJ02127.1| alanyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|218366454|emb|CAR04206.1| alanyl-tRNA synthetase [Escherichia coli S88]
 gi|226899723|gb|EEH85982.1| alanyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|294489971|gb|ADE88727.1| penicillin-binding protein 7 [Escherichia coli IHE3034]
 gi|307625735|gb|ADN70039.1| alanyl-tRNA synthetase [Escherichia coli UM146]
 gi|323951085|gb|EGB46961.1| alanyl-tRNA synthetase [Escherichia coli H252]
 gi|323957093|gb|EGB52818.1| alanyl-tRNA synthetase [Escherichia coli H263]
          Length = 876

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 561/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNESRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFDAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|330432525|gb|AEC17584.1| alanyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 874

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/902 (42%), Positives = 545/902 (60%), Gaps = 56/902 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSYLDFFHSKGHQIVASSSLVPENDPTLLFTNAGMNQFKDVFLGIDKRSYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHFAWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ DEEA+ +W +  G+ AD+I+RI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDEEAYNIWHQQIGVPADRIVRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQ+ +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQYNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+FK LI    ++TG K   N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFKVLIAKVAEITGEKDLANK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +  LLG  +     L+P L   M  A   L + ++ IE+ 
Sbjct: 299 YPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPTLIEVMAQAGEILKEKQVHIEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ L    +L+G+VAFKLYDT+G PLD+  D+   R  
Sbjct: 359 LRLEEEQFARTLERGLALLDAELASLK-GNVLSGEVAFKLYDTYGFPLDLTADVCRERD- 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   FN+ +E QR RA+A S           + +L    G T F GY          
Sbjct: 417 IAIDEDGFNREMEAQRERAQAASQFGM------DYNNLIRVDGTTAFEGYHAAESL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V AI   G+ V +  +GQ   ++ + TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVSAIFVDGKEVNQVQAGQSAVIILENTPFYAESGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G          + D QK    +F H   +++G ++   +L   +D + R+  S+NHSAT
Sbjct: 508 SGILESADALFTVNDTQKYG-QVFGHIGELKKGEIKVGQTLHAVVDAERRQATSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG+HV+Q GS ++   LRFD +  + I+ A++  IE  VN  I  N  V 
Sbjct: 567 HLLHAALRQVLGTHVAQKGSLVSDKLLRFDFSQPEAISKAQIAEIERIVNSQIRANHVVS 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A A GA AL G KY DRVRV+++     G  S  LCGG HV  TG+I L  I
Sbjct: 627 VEEMDIEAAKAKGAMALFGEKYGDRVRVITM-----GDFSIELCGGIHVKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSES+I AG RRIEA+TG+ A + ++ Q   L   A  LK    ++V +++++ +  +KL
Sbjct: 682 VSESAIAAGTRRIEAVTGEEAFNVVLAQQSLLTQSAELLKSDLPSIVEKIQQLQDRAKKL 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +  V+ +S        I  V  +   ++ VD K L+ ++D L+ ++ + +I
Sbjct: 742 EKELQQLKEKSAVQAVSDLAQKAQTINGVKVVIESVTGVDPKSLRIMVDDLKNQLGTAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G ++++K ++++ VT+DL  +  A +L    A+++ GG GGGRP MA +GG    K 
Sbjct: 802 V-FGATQDEKVNLIVGVTQDLTGKVKAGELVNQLAQLV-GGKGGGRPDMAMAGGNEPAKL 859

Query: 886 DQ 887
           ++
Sbjct: 860 NE 861


>gi|331674208|ref|ZP_08374968.1| alanine--tRNA ligase [Escherichia coli TA280]
 gi|222034390|emb|CAP77132.1| alanyl-tRNA synthetase [Escherichia coli LF82]
 gi|312947225|gb|ADR28052.1| alanyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|331068302|gb|EGI39697.1| alanine--tRNA ligase [Escherichia coli TA280]
          Length = 876

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|148560301|ref|YP_001259121.1| alanyl-tRNA synthetase [Brucella ovis ATCC 25840]
 gi|205829997|sp|A5VQX4|SYA_BRUO2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148371558|gb|ABQ61537.1| alanyl-tRNA synthetase [Brucella ovis ATCC 25840]
          Length = 885

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/893 (53%), Positives = 623/893 (69%), Gaps = 36/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG   +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+  V  + +E +KL+   
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDHVNALIDERKKLEREL 756

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  + +L +       D +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGDSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869


>gi|170019057|ref|YP_001724011.1| alanyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|205830085|sp|B1IUY2|SYA_ECOLC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169753985|gb|ACA76684.1| alanyl-tRNA synthetase [Escherichia coli ATCC 8739]
          Length = 876

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           PANE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PANENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|30064057|ref|NP_838228.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|56480163|ref|NP_708505.2| alanyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|110806677|ref|YP_690197.1| alanyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|44888327|sp|Q7UBU3|SYA_SHIFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123146773|sp|Q0T1C3|SYA_SHIF8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|30042313|gb|AAP18038.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|56383714|gb|AAN44212.2| alanyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|110616225|gb|ABF04892.1| alanyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|281602067|gb|ADA75051.1| Alanyl-tRNA synthetase [Shigella flexneri 2002017]
          Length = 876

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   ID   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADIDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMNLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|293412052|ref|ZP_06654775.1| alanyl-tRNA synthetase [Escherichia coli B354]
 gi|291468823|gb|EFF11314.1| alanyl-tRNA synthetase [Escherichia coli B354]
          Length = 876

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLNEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|213968623|ref|ZP_03396765.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301385518|ref|ZP_07233936.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|213926556|gb|EEB60109.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
          Length = 874

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  +PSSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P++EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E+F KTL++GL +++  L+ L    ++ G++ FKLYDT+G P+D+  DI   R L 
Sbjct: 359 RGEEEQFAKTLEQGLKIIEQDLAELK-GTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R  ++D  K      +HH +V  G L   + +   +  + R    +NHSATH
Sbjct: 508 GFLLAGDTRFDVSDTTKTGGAS-LHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVVT
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|317493956|ref|ZP_07952373.1| alanyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918283|gb|EFV39625.1| alanyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 875

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+F+   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFYHSKGHQIVESSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFNIWADEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI A+ +VTG      +  + RVI DH+RS +FL++DG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIAATAKVTGATD--LSSKSLRVIADHIRSCAFLVSDGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  ++G  E     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGNMVGAKETFFYKLVAPLIEVMGPAADELKRQQSMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G PLD+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLS-GDTLDGETAFRLYDTYGFPLDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D I F +A+EEQR RAR       S      + S+    GA++F GYD          
Sbjct: 420 -VDEIGFERAMEEQRRRARE------SSGFGADYNSMIRVDGASKFSGYDH--------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   S V A+ + G+ V+   +G++  VV ++TPFYAE+GGQ+GD 
Sbjct: 464 --------------NQQHSSVTALFRDGQAVDVLNAGEEGVVVLNETPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   +TD QK       H   V +G ++   S+  TID   R ++ +NHSATH
Sbjct: 510 GELTAQGVSFVVTDTQKYG-QAIGHQGKVAQGSVKVGDSVEATIDEARRSRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS ++   LRFD +H + +   +++ +ED VN  I +NLP+ T
Sbjct: 569 LLHAALRQVLGDHVSQKGSLVSDRNLRFDFSHFEAMKPEQIRQVEDIVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA A GA AL G KY++ VRV+S+     G  S+ LCGGTH   TG+I L  I 
Sbjct: 629 NIMDLEDAKAKGAMALFGEKYDESVRVLSM-----GDFSTELCGGTHARQTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+   AG+RRIEA+TG+ A + +    + L+  AS +K    +V  ++  + ++ R+L+
Sbjct: 684 SEAGTAAGVRRIEAVTGEGAIAVMHQDADALREAASLVKSDAHSVAEKIRAVMDKTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +  V++K L++++D L+ ++ SG+++
Sbjct: 744 KELQQLKDQQAAQESASLSSKAVDVKGVKLLVSQLDNVEAKMLRTMVDDLKNQLGSGVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + E K S++  VT+DL D+  A +L  + A+ + GG GGGRP MA +GG +     
Sbjct: 804 LATTA-EGKVSLVAGVTKDLTDKVKAGELIGMVAQQV-GGKGGGRPDMAMAGGSDATALP 861

Query: 887 QAIAGVASFL 896
           QA+AGV +++
Sbjct: 862 QALAGVEAWV 871


>gi|298292138|ref|YP_003694077.1| alanyl-tRNA synthetase [Starkeya novella DSM 506]
 gi|296928649|gb|ADH89458.1| alanyl-tRNA synthetase [Starkeya novella DSM 506]
          Length = 883

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/905 (51%), Positives = 618/905 (68%), Gaps = 33/905 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR TFL++F KNGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRATFLDYFAKNGHQVVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGIEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+T+EF+L
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIEFAWNLITREFEL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY ED+EAF LWK+I+GL   KI+RI T+DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PVEKLMVTVYHEDDEAFSLWKRIAGLPDSKIVRIATSDNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG P     +G+R+IEIWNLVFMQFEQ    ER  LP+ SIDTGMGLER++ VLQ 
Sbjct: 181 DHIPGGPPGSPDADGDRFIEIWNLVFMQFEQLPGGERLNLPRPSIDTGMGLERISAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDL + L  A E++T +  +G    +HRVI DHLR+S+FL+ADG+LP+NEGRGY
Sbjct: 241 THDNYEIDLMRALTGAVEEMTDVPADGPQKASHRVIADHLRASTFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  L+P L  EMG A+PE+++A+ L+ ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGARDPLMHRLVPILVREMGRAFPEIVRAEPLVTETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +L+     LG     +G+ AFKLYDT+G PLD+ +D L ARG   +D+ SFN
Sbjct: 361 KTLERGLSILETESEGLGAGAKFSGETAFKLYDTYGFPLDLTEDALRARG-VNVDVDSFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ ARA   G G   T+ +WF+++E+ G T+F+GY                   
Sbjct: 420 AAMERQRAEARASWAGSGEAATDTVWFAVREEVGPTEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V +G+ VE   +G +  VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 461 ----GTETAEGTVTALVTEGKRVETLPAGARGLVVLNQTPFYGESGGQVGDTGTMSGEGG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +L++T  QKK   IF H   VE G L     L L +D + R+ +  NHSATHLLH AL 
Sbjct: 517 LKLRVTGTQKKLGDIFAHEVEVEEGTLTIGAPLALFVDGERRQAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + PD LRFD +H KP+ +AELK++ED  N I+ +N PVVTR+M  +D
Sbjct: 577 RVLGDHVAQKGSLVAPDRLRFDFSHPKPVEAAELKAVEDIANRIVLRNEPVVTRLMAVDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           AI SGA AL G KY D VRVVS+  + G    +S  LCGGTHV+ TG+I L+ ++ ES++
Sbjct: 637 AIESGARALFGEKYGDEVRVVSMGTDPGNGAPYSVELCGGTHVARTGDIGLVSVLGESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH-- 774
            AG+RRIEA+TG  AR HL  Q   L+  A  L+   G V  R+ ++ EE RKL+     
Sbjct: 697 GAGVRRIEAMTGDAARHHLNAQSRALQGAADVLRAPVGEVEARIAQLVEERRKLERELGD 756

Query: 775 AKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           AKRKL +      +     +  V  ++  +S +D K+LKS+ D  +K+I SGI+ +VG++
Sbjct: 757 AKRKLAMGGGAASEEPARTVGAVKLLARQVSGIDLKDLKSLADEGKKRIGSGIVAIVGVT 816

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           +E +A +++ VT+DL  +++AV L R  A+ LGG GGGGRP MAQ+GGP+G +A +A+A 
Sbjct: 817 EEGRAGLVVGVTDDLTGKYDAVALVRRGAEALGGKGGGGRPDMAQAGGPDGGRAAEALAA 876

Query: 892 VASFL 896
           + + L
Sbjct: 877 IENAL 881


>gi|74313262|ref|YP_311681.1| alanyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|157158305|ref|YP_001464004.1| alanyl-tRNA synthetase [Escherichia coli E24377A]
 gi|191167095|ref|ZP_03028916.1| alanyl-tRNA synthetase [Escherichia coli B7A]
 gi|193065058|ref|ZP_03046133.1| alanyl-tRNA synthetase [Escherichia coli E22]
 gi|193069650|ref|ZP_03050602.1| alanyl-tRNA synthetase [Escherichia coli E110019]
 gi|194427866|ref|ZP_03060412.1| alanyl-tRNA synthetase [Escherichia coli B171]
 gi|209920136|ref|YP_002294220.1| alanyl-tRNA synthetase [Escherichia coli SE11]
 gi|218555239|ref|YP_002388152.1| alanyl-tRNA synthetase [Escherichia coli IAI1]
 gi|218696288|ref|YP_002403955.1| alanyl-tRNA synthetase [Escherichia coli 55989]
 gi|256019527|ref|ZP_05433392.1| alanyl-tRNA synthetase [Shigella sp. D9]
 gi|260845339|ref|YP_003223117.1| alanyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260856802|ref|YP_003230693.1| alanyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260869370|ref|YP_003235772.1| alanyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|293449010|ref|ZP_06663431.1| alanyl-tRNA synthetase [Escherichia coli B088]
 gi|307314418|ref|ZP_07594023.1| alanyl-tRNA synthetase [Escherichia coli W]
 gi|331669429|ref|ZP_08370275.1| alanine--tRNA ligase [Escherichia coli TA271]
 gi|123616373|sp|Q3YYG6|SYA_SHISS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830081|sp|A7ZQC5|SYA_ECO24 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|73856739|gb|AAZ89446.1| alanyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|157080335|gb|ABV20043.1| alanyl-tRNA synthetase [Escherichia coli E24377A]
 gi|190902877|gb|EDV62605.1| alanyl-tRNA synthetase [Escherichia coli B7A]
 gi|192927355|gb|EDV81974.1| alanyl-tRNA synthetase [Escherichia coli E22]
 gi|192957013|gb|EDV87464.1| alanyl-tRNA synthetase [Escherichia coli E110019]
 gi|194414099|gb|EDX30375.1| alanyl-tRNA synthetase [Escherichia coli B171]
 gi|209913395|dbj|BAG78469.1| alanyl-tRNA synthase [Escherichia coli SE11]
 gi|218353020|emb|CAU98845.1| alanyl-tRNA synthetase [Escherichia coli 55989]
 gi|218362007|emb|CAQ99613.1| alanyl-tRNA synthetase [Escherichia coli IAI1]
 gi|257755451|dbj|BAI26953.1| alanyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257760486|dbj|BAI31983.1| alanyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257765726|dbj|BAI37221.1| alanyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|291322100|gb|EFE61529.1| alanyl-tRNA synthetase [Escherichia coli B088]
 gi|306905986|gb|EFN36507.1| alanyl-tRNA synthetase [Escherichia coli W]
 gi|315061973|gb|ADT76300.1| alanyl-tRNA synthetase [Escherichia coli W]
 gi|323180115|gb|EFZ65667.1| alanyl-tRNA synthetase [Escherichia coli 1180]
 gi|323377445|gb|ADX49713.1| alanyl-tRNA synthetase [Escherichia coli KO11]
 gi|323946425|gb|EGB42453.1| alanyl-tRNA synthetase [Escherichia coli H120]
 gi|324119946|gb|EGC13824.1| alanyl-tRNA synthetase [Escherichia coli E1167]
 gi|331063097|gb|EGI35010.1| alanine--tRNA ligase [Escherichia coli TA271]
 gi|332103001|gb|EGJ06347.1| alanyl-tRNA synthetase [Shigella sp. D9]
          Length = 876

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|15832808|ref|NP_311581.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168749982|ref|ZP_02775004.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|168755438|ref|ZP_02780445.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|168762908|ref|ZP_02787915.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168768784|ref|ZP_02793791.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|168774775|ref|ZP_02799782.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|168778675|ref|ZP_02803682.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|168800226|ref|ZP_02825233.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|194433071|ref|ZP_03065354.1| alanyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|195938445|ref|ZP_03083827.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|208805868|ref|ZP_03248205.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208813761|ref|ZP_03255090.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208818286|ref|ZP_03258606.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209398791|ref|YP_002272160.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217327497|ref|ZP_03443580.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254794638|ref|YP_003079475.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|291284024|ref|YP_003500842.1| Alanyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|20532246|sp|Q8X3W8|SYA_ECO57 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13363025|dbj|BAB36977.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|187769613|gb|EDU33457.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188015823|gb|EDU53945.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|189003197|gb|EDU72183.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189357241|gb|EDU75660.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189362083|gb|EDU80502.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189366853|gb|EDU85269.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189377449|gb|EDU95865.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|194418798|gb|EDX34884.1| alanyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|208725669|gb|EDZ75270.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208735038|gb|EDZ83725.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208738409|gb|EDZ86091.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209160191|gb|ACI37624.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217319864|gb|EEC28289.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254594038|gb|ACT73399.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|290763897|gb|ADD57858.1| Alanyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|320640339|gb|EFX09878.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320645886|gb|EFX14867.1| alanyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320651186|gb|EFX19621.1| alanyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320656736|gb|EFX24624.1| alanyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662279|gb|EFX29676.1| alanyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667330|gb|EFX34288.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
          Length = 876

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|187734262|ref|YP_001881554.1| alanyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|205830210|sp|B2U049|SYA_SHIB3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187431254|gb|ACD10528.1| alanyl-tRNA synthetase [Shigella boydii CDC 3083-94]
          Length = 876

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRVVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|295688603|ref|YP_003592296.1| alanyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
 gi|295430506|gb|ADG09678.1| alanyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
          Length = 880

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/904 (49%), Positives = 588/904 (65%), Gaps = 34/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F K  H ++PS+ L+P NDPTL+F N+GMVPFKN+FTG E P +  
Sbjct: 1   MPSLNEIRSTFLDYFGKADHAVVPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPAHPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT EF L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHHAWTLLTGEFKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  LWKKI+GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PKEKLLVTVYHTDDEAADLWKKIAGLSDDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG P    E+G+R+IEIWNLVFMQFEQ    +R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQFEQLAGGDRVSLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD+DLFK LI AS ++TG+K EG+   +HRVI DHLRSSSFL+ADG+ P+NEGRGY
Sbjct: 241 VHNNYDVDLFKALIAASVELTGVKAEGDQAPSHRVIADHLRSSSFLLADGVSPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L P L  EMG AYPEL +A+  I ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGAQEPLMHRLAPTLVAEMGQAYPELRRAEASIVETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ LLD   ++L    +L+G+ AFKLYDT+G PLD+ QD + A+GL  +D   F+
Sbjct: 361 TTLGRGMGLLDEATANLSAGGVLDGETAFKLYDTYGFPLDLTQDAVRAKGLT-VDTDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+++QR  ARA+  G G       WF++KEK GAT F+GY+                  
Sbjct: 420 AAMQKQREMARANWAGSGQQGAAAAWFAIKEKNGATDFVGYETTE--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    + +V+AIV  G  V+ A  G  VEV+ D+T FYAE+GGQ GD G    +G 
Sbjct: 465 --------TTGVVQAIVVDGAEVQSATGGTTVEVLLDRTSFYAESGGQAGDQGALEANGR 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QK+A  + VH      G L+    +V+++D   R+    NHSA HL+H AL  
Sbjct: 517 ENRVIDTQKQAGELHVHRV-ELSGELKVGDKVVVSVDADRRQTTRSNHSAAHLVHAALHH 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H  P+T  EL  IE  VN +I QN+P  T+ M  ++A
Sbjct: 576 VLGPHVAQKGQMVDGERMRFDFSHGGPLTPEELDKIEAEVNAVIRQNVPAETKEMAPQEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++     ++   +S  LCGGTHVS TG+I L  IVSE  +
Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGKSLTDESKAYSVELCGGTHVSRTGDIALFKIVSEQGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ AR  L+ Q    KSLA   K     V  RV+ +  + ++L+   A+
Sbjct: 696 AAGVRRIEALTGEAARRFLLDQAGVAKSLADQFKTPVAEVAQRVDALIADRKRLEKELAE 755

Query: 777 RKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            K QL +           +  V  ++ ++  V  KEL+ V +  +K++ SG++ LVG S 
Sbjct: 756 AKKQLALGGGGAASGPEDVNGVALIARVLDGVGGKELRGVAEEFKKQLTSGVVALVGTS- 814

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA+V + VT DL  +F+A DLA+ +   +GG G GG+   AQ G P+ +KAD+ +A V
Sbjct: 815 DGKAAVTVAVTADLTGKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDDSKADEGLAAV 874

Query: 893 ASFL 896
            + L
Sbjct: 875 KAAL 878


>gi|307132211|ref|YP_003884227.1| alanyl-tRNA synthetase [Dickeya dadantii 3937]
 gi|306529740|gb|ADM99670.1| alanyl-tRNA synthetase [Dickeya dadantii 3937]
          Length = 875

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 539/910 (59%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIIYAWELLTSPQWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYDIWANEVGVPHERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLFK LI  +  V G      N  + RVI DH+RS +FLIADG++
Sbjct: 243 RISAVLQHVNSNYEIDLFKALIAEAASVVGTDD--LNNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL + + L+E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGTLIKVMGPAAEELQRQQGLVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL+LLD  +  L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KNEEEQFARTLERGLLLLDEEIKQLK-GDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E QR RAR       +      + SL     +T F GY+          
Sbjct: 420 -VDEEGFERAMEAQRQRAR------DASGFGADYNSLIRVDESTTFCGYERTDQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V AI +QGE V+E  +G    V+  +TPFY E+GGQ+GD 
Sbjct: 467 -----------------QSKVVAIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D QK  +    H   + +G LR    +   +D+  R ++ +NHSATH
Sbjct: 510 GELTSAAARFSVADAQKYGQ-AIGHIGKLTQGSLRVNDKVDAVVDHVRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN  I +NLPV T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDSYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A A GA AL G KY + VRV+S+     G  S  LCGGTH   TG+I L  IV
Sbjct: 629 DVMALDAARAKGAMALFGEKYEENVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A   L  Q++ L  +   +K    N+  +V  + E  R L+
Sbjct: 684 SESGTAAGIRRIEAVTGENAIVALHHQNDLLHEVTQLVKGDSNNLADKVRSLLERTRGLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ S        I  V  +   +S V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQQAAQESSSLSSKAKDINGVKLLVTQLSNVEPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S++  VT++L DR  A +L    A  + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-STVADGKVSLIAGVTKELTDRVKAGELIGFVANQV-GGKGGGRPDMAQAGGSDVDALP 861

Query: 887 QAIAGVASFL 896
            A+  + +++
Sbjct: 862 SALTSIEAWV 871


>gi|168787948|ref|ZP_02812955.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|261225988|ref|ZP_05940269.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256754|ref|ZP_05949287.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|189372228|gb|EDU90644.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
          Length = 876

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED +N  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLMNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|330879688|gb|EGH13837.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 874

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/912 (42%), Positives = 538/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASARAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P++EGRGYVLRRI+RRA  +   LG        ++ AL TEMGSA+PEL+Q +  IE  L
Sbjct: 299 PSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVTEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +++  L+ L    ++ G++ FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKIIEQDLAELK-GTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R  ++D  K     F+HH +V  G L   + +   +  + R    +NHSATH
Sbjct: 508 GFLLAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVVT
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|82778066|ref|YP_404415.1| alanyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|123561812|sp|Q32CN1|SYA_SHIDS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|81242214|gb|ABB62924.1| alanyl-tRNA synthetase [Shigella dysenteriae Sd197]
          Length = 876

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ   VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|331678669|ref|ZP_08379343.1| alanine--tRNA ligase [Escherichia coli H591]
 gi|331073499|gb|EGI44820.1| alanine--tRNA ligase [Escherichia coli H591]
          Length = 876

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQERANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|269140202|ref|YP_003296903.1| alanyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267985863|gb|ACY85692.1| alanyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304560033|gb|ADM42697.1| Alanyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 875

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+F+   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGAQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYESDDEAYDIWANEVGVPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG P    E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI  + +V G+     +  + RVI DH+RS +FL++DG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIAETARVIGVSD--LSSKSLRVIADHIRSCAFLVSDGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA   L Q + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGHMLGAKEAFFYKLVKPLIAVMGSAADALAQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G PLD+  D+   RGL 
Sbjct: 361 KTEEEQFARTLERGLTLLDDELSTLD-GDTLDGETAFRLYDTYGFPLDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E QR RAR       S      + S+    G+T F GY           
Sbjct: 420 -VDEEGFERAMEAQRRRARE------SSGFGADYNSMIRVDGSTDFTGY----------- 461

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             ++V A+   G+ V+   +G++  VV  QTPFYAE+GGQ+GD 
Sbjct: 462 ------------HLQQQDALVTALFHNGQAVDALQAGEEGVVVLAQTPFYAESGGQVGDR 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G R  + D QK  +    H   V +G LR    +  +ID   R ++  +HSATH
Sbjct: 510 GELTAQGCRFVVEDTQKYGQ-AIGHLGKVAQGSLRVGERVQASIDGARRERIRQSHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL ++LG HV+Q GS ++   LRFD +H++ +   +++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRSVLGEHVAQKGSLVSDGALRFDFSHAEAMKPQQIRQVEDIVNAQIRRNLPIDT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M  E+A A GA AL G KY+ +VRV+S+     G  S+ LCGGTH   TG+I L  IV
Sbjct: 629 QEMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GDFSTELCGGTHAERTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG++A   +  + + L+  AS +K    +V  ++  + E+ R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEQALLAMHQESDMLREAASLVKGDAQSVAEKIRAVMEKSRQLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         ++  V  +   +  V+ K L++++D L+ ++ S I++
Sbjct: 744 KALQQLKDQQAAQESASLSGKAVEVNGVKLLVSQLDGVEPKMLRTMVDDLKNQMGSCIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L       K S++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATAEA-GKVSLIAGVTKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
           QA+A V  ++
Sbjct: 862 QALASVTDWV 871


>gi|239996387|ref|ZP_04716911.1| alanyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 865

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/901 (42%), Positives = 535/901 (59%), Gaps = 48/901 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  F+++F+ +GH+ + SSSL+P +DPTL+FTN+GM  FK+ F G EK  Y    
Sbjct: 4   STADLRNKFIDYFKSHGHQAVASSSLVPADDPTLLFTNAGMNQFKDCFLGAEKRSYTRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE  L +
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIEFAWNFLTKEIGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY ED+EAF +W+   G+  +KIIRI+T+DNFWSM +TGPCGPCSEIF+D G  
Sbjct: 124 EKLLVTVYSEDDEAFDIWENHIGVPKEKIIRISTSDNFWSMGDTGPCGPCSEIFYDHGAH 183

Query: 183 IPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG P    E+G+R+IEIWNLVFMQF +Q       LPK SIDTGMGLER++ +LQ   
Sbjct: 184 IWGGPPGTPEEDGDRFIEIWNLVFMQFNKQADGTMEPLPKPSIDTGMGLERISAILQNVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+IDLF++LI+++  + G +       + RVI DH+RS SFLI DG++P+NEGRGYVL
Sbjct: 244 SNYEIDLFQNLIKSAASIVGSED--LENKSLRVIADHIRSCSFLICDGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  +     L+ +L  EMG AYPEL+    +IE+ LR E+E+F KT
Sbjct: 302 RRIIRRAVRHGYQLGANDIFFYKLVASLAKEMGEAYPELVDQLPVIEKVLRVEEEQFSKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG+ +L+  L  L   + + GDV FKLYDT+G P D+  D+     L  ID   F  A
Sbjct: 362 LARGMAILNDTLETLE-GDTVPGDVVFKLYDTYGFPTDLTNDVAREHDLK-IDEEGFEAA 419

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++         +    +      + S       T F GY  + G                
Sbjct: 420 MQ------AQRARAQQASNFGADYNSKLAIDHTTSFTGYTDVEG---------------- 457

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   + V  ++     VE+   GQ+  VV D TPFYAE+GGQ GD G         
Sbjct: 458 -------QANVVELIADNAFVEKLEDGQEGVVVLDSTPFYAESGGQAGDKGVLRVANGEF 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +TD QK        H  + +G +    +    ID  NR  +  NHSATHLLH AL  IL
Sbjct: 511 IVTDTQKMGNAF--AHKGIAKGSVSKGDTATAAIDAANREAIKKNHSATHLLHAALREIL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV+Q GS +    +RFD +H + +T+ +L  IE  VN  I  N  + T +M+ ++A A
Sbjct: 569 GEHVTQKGSLVEAPRMRFDFSHFEAVTAEQLAEIERRVNQEIRANHTLATELMDLDEAKA 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL G KY+++VRVV++     G  S  LCGGTHV+ TG+I L  I SE+ I +G+R
Sbjct: 629 SGAMALFGEKYDEKVRVVTM-----GPFSVELCGGTHVTRTGDIGLFKITSEAGIASGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+TG+ A   +  Q   L SL++ LK    NV+ RV  +  + ++L+      K +L
Sbjct: 684 RIEAVTGEHALEVVQTQQATLSSLSALLKTDSQNVLDRVVSLQNQTKELEKALNSAKQKL 743

Query: 782 NVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             +       +  +I  V  +   +  V++K L+S+MD ++ +I  GI++L G++ + K 
Sbjct: 744 ASQQGADMLSNAVEINGVKVLIANLEGVEAKSLRSMMDDIKNRIGEGIVVL-GVANDAKV 802

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +++  VT++L  +  A +L    A  + GG GGGRP MAQ+GG       QA+  V ++L
Sbjct: 803 NLIAGVTKNLTSKVKAGELVNFVASQV-GGKGGGRPDMAQAGGDQPENLGQALDSVNAWL 861

Query: 897 K 897
           +
Sbjct: 862 Q 862


>gi|56475970|ref|YP_157559.1| alanyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|81598995|sp|Q5P7Q3|SYA_AZOSE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56312013|emb|CAI06658.1| Alanyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 873

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/911 (40%), Positives = 532/911 (58%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH+++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKSAEIREKFLKFFESKGHQIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+EF L 
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAITYAWELLTEEFGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY +D+EA+ +W K  G+ A+++IRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYADDDEAYDIWTKEIGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG P    E+G+RYIEIWN VFMQF +        LP+ S+DTGMGLER+
Sbjct: 181 IFYDHGPEIWGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPRPSVDTGMGLERV 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + VLQ   +NY+IDLF+ LI+A+ + TG      +  + +VI DH+R+ SFLIADG++P 
Sbjct: 241 SAVLQHVHSNYEIDLFQTLIRAAARETGCAD--LDSPSLKVIADHIRACSFLIADGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+P L TEMG AYPEL   +  + + L+ 
Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGSRAAFFHRLVPDLVTEMGPAYPELKAGQARVADVLKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF  T++ G+ +L+  L+ +        NG+ AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEERFFATIENGMAILETELAAMATAGSRTFNGETAFKLHDTYGFPLDLTADVCRERDVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
                  + A+  Q+ +ARA      +        +L+ +   T+F GY+ L        
Sbjct: 419 VDAAAF-DAAMARQKEQARAAGKFRMAM-------NLEYEGPETKFHGYERLEER----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 466 ------------------GTVLALYKDGAPVVELQEGDIGVVVLDNTPFYAESGGQVGDR 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G     ++ D QK    ++ HH +V+ G L     L   +D + R     NHS TH
Sbjct: 508 GELRGSAGIFEVEDTQKIQAAVYGHHGVVKTGRLAVGQELGARVDGEARASTQRNHSVTH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS + PD  RFD  H+ P++  E++ +ED VN  I  N+    
Sbjct: 568 LMHKALREVLGAHVQQKGSQVDPDKTRFDFAHTAPLSPEEIREVEDLVNAEILANVATEA 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ +DA  SGA  L G KY D VRV+++        S  LCGGTHV+ TG+I L  IV
Sbjct: 628 RVMSIDDAQKSGAMMLFGEKYGDEVRVLAIGS------SKELCGGTHVARTGDIGLFKIV 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A  +   Q+ +++ +++ LKV    V  R+  I +  R L+
Sbjct: 682 SEGGVAAGVRRIEAVTGANALRYAQEQERRVQGISALLKVQPDEVAERIAGILDNVRALE 741

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A+ K +L             ++     ++ ++   D   L+  +D L+ K++S +I+
Sbjct: 742 KELARMKSRLAASQGDELVAQAVEVRGAKVLAAMLEGADVATLRETLDKLKDKLKSAVIV 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + + S++  VT DL  +  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 802 LAAVA-DGRVSLIAGVTSDLTAKLKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDPAHLP 859

Query: 887 QAIAGVASFLK 897
            A+A V ++ +
Sbjct: 860 AALASVKAWAE 870


>gi|254714269|ref|ZP_05176080.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261322043|ref|ZP_05961240.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261294733|gb|EEX98229.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1]
          Length = 885

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/893 (53%), Positives = 622/893 (69%), Gaps = 36/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG   +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+    V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL+   
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  + +L +         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869


>gi|153009317|ref|YP_001370532.1| alanyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|205830165|sp|A6X0E9|SYA_OCHA4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151561205|gb|ABS14703.1| alanyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 885

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/893 (53%), Positives = 621/893 (69%), Gaps = 36/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++++KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYYRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYHTDDDAANYWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ   ++R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQITPEQRIDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG    +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGEFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A  LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRADALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LL      L + + L+G+ AFKLYDT+G PLD+ QD L  RG   +D   F+
Sbjct: 361 KTLDRGLGLLSDATESLVEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTDGFS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 AAMQRQKAEARANWAGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ A+V+ G  V+ A  G  V VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TEVAEGVITALVRDGAEVQSAAEGDVVSVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I D QKK EG+FVH   V +G  +T  ++ L +D   R ++  NHSATHLLH AL  
Sbjct: 517 AIAIKDTQKKGEGVFVHIGEVTKGTAKTGDAVELKVDSVRRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LGSHV+Q GS + PD LRFD +H KPI++ EL  +E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGSHVAQKGSLVAPDRLRFDFSHPKPISAEELTQVENLANEIILQNAPVSTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       ++G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKEGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG+ AR +L  QDE++K++A  LK +    + RV  + +E +KL+   
Sbjct: 697 AVAAGVRRMEALTGEAARLYLEEQDERVKAIAGALKTTPSEALERVNALLDERKKLEREL 756

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  + +L +         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSADGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           GI ++ KAS +  VTEDL+ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 GIGEDSKASAVAAVTEDLVGRFSAVDLVRAASVALGGAGGGGRPDMAQAGGPD 869


>gi|33597425|ref|NP_885068.1| alanyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|41018188|sp|Q7W6N4|SYA_BORPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33573852|emb|CAE38162.1| alanyl-tRNA synthetase [Bordetella parapertussis]
          Length = 874

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/911 (43%), Positives = 547/911 (60%), Gaps = 53/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FFQ  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y+  
Sbjct: 1   MKSSEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYRLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEIWGGPPGSLEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI A+ + TG+K   +N  + +VI DH+R+ +FLI DGI+P+
Sbjct: 241 AAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADN--SLKVIADHIRACAFLIVDGIIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL Q    + + LR 
Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++RFG+TL+ G+ +LDG L+ + K + L+G   F LYDT+G P+D+  DI   RG   +
Sbjct: 359 EEKRFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICRERG-VEV 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F  A++ QR +ARA      +         L  +   T+F GY+ L  S       
Sbjct: 418 DMAGFEAAMQRQREQARAAGKFKMAEG-------LSYEGAETRFEGYESLELSGV----- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+  +G  VE+  +GQ   VV D TPFYAE+GGQ+GDTG 
Sbjct: 466 -----------------KVTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGL 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D  K   G+F HH  +E G L+   +L+  +D   R +   NHSATHL+
Sbjct: 509 LEAGGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     ++
Sbjct: 569 HKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKV 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  +VSE
Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVRRTGDIGLFKVVSE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEAITG  A + +  Q+  L+  A  L+     +  R+ ++ E+ + L+  
Sbjct: 683 GGVAAGVRRIEAITGDNALAWVQDQNVLLQRAAGVLRAPAHELPERIAQVQEQLKALEKE 742

Query: 774 HAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             + + +L           +  ++  +  ++  I +VD K L+ ++D L+ +++  +++L
Sbjct: 743 LEQARTKLAASAGNDLAATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              S + K S++  VT DL  R  A DL    A  +GG G GGRP MA  GG +      
Sbjct: 803 AAGSADGKISLVGGVTADLTGRIKAGDLVGFVAGQVGGKG-GGRPDMAMGGGTDLAALPA 861

Query: 888 AIAGVASFLKK 898
           A+A V  ++ +
Sbjct: 862 AVASVQKWVDE 872


>gi|113868727|ref|YP_727216.1| alanyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123133735|sp|Q0K823|SYA_RALEH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|113527503|emb|CAJ93848.1| Alanyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 874

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/910 (42%), Positives = 535/910 (58%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK + L 
Sbjct: 61  TSAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAILYAWELLTKTYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ A++I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYAEDDEAYDIWAKEVGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIE+WNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEVWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + T +     N  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETHID--NLNQNSLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    ++  L  +MG AYPEL +A+  + E L++
Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGQKTPFFHKMVADLVEQMGQAYPELAEAQSRVTEVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  L+   L   + L+G++AFKL+DT G PLD+ QD+   +   
Sbjct: 359 EEERFFETIENGMSILDAALADLKLKGGKTLDGELAFKLHDTFGFPLDLTQDVCREQ-EI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           G+D  +F+ A+  QR +ARA      +         L+     T F GY+ L        
Sbjct: 418 GVDEAAFDAAMNRQREQARAAGKFKMAAG-------LEYTGDKTVFHGYEKLELP----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V     GQ   VV D TPFYAE+GGQ GD 
Sbjct: 466 -----------------QARVTALYVDGAAVNAMQPGQTGVVVLDNTPFYAESGGQAGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +TD  K    +F H   +E G L+   ++   +D Q R +   NHSATH
Sbjct: 509 GVLKAGNAVFAVTDTTKIQADVFGHQGTLEGGALKVGDAVSAQVDAQRRARTVRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD +H+  +T  +++ +E+ VN  I +N     
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFSHNAALTDEQIRRVEEIVNAEILRNDDTHA 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV  TG+I L  IV
Sbjct: 629 EIMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  +L G D +L   A+ LK     +V R+ ++ ++ R L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNALHYLQGLDARLNEAAAVLKAQPSELVPRIGQVQDQVRALE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +L              I  +  ++  +   D K L+  MD L+ K++S  I+
Sbjct: 743 KELERLKSKLAASQGDELAAQAVDIKGLKVLAAQLDGADVKTLRETMDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +S + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LGAVS-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFL 896
           QA+AGV  ++
Sbjct: 861 QALAGVGEWV 870


>gi|239832092|ref|ZP_04680421.1| alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824359|gb|EEQ95927.1| alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 885

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/893 (53%), Positives = 624/893 (69%), Gaps = 36/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDEAISFAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYHTDDDAANYWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ   ++R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQITPEQRIDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K +G    +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKADGELRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPTLIREMGQAYPELIRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG   +D   F+
Sbjct: 361 KTLDRGLGLLSDATENLVEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTDGFS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 AAMERQKAEARANWAGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G  V+ A  G+ V VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVVAALVRDGAEVQSASEGEVVSVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I D QKK EG+FVH   V +G ++T  ++ L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAIKDTQKKGEGVFVHIGEVAKGTVKTGDAVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LGSHV+Q GS + PD LRFD +H KPI++ EL  +E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGSHVAQKGSLVAPDRLRFDFSHPKPISAEELAKVENLANEIILQNAPVSTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       ++G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKEGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG+ AR +L  QDE++K++A  LK +    + RV  + +E +KL+   
Sbjct: 697 AVAAGVRRMEALTGEAARLYLEEQDERVKAIAGALKTTPAEALERVNALLDERKKLEREL 756

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  + +L +         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSADGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+ ++ KAS +  VTEDLL RF+AVDL R ++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 GVGEDDKASAVAAVTEDLLGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869


>gi|82545227|ref|YP_409174.1| alanyl-tRNA synthetase [Shigella boydii Sb227]
 gi|123558824|sp|Q31X62|SYA_SHIBS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|81246638|gb|ABB67346.1| alanyl-tRNA synthetase [Shigella boydii Sb227]
 gi|320186483|gb|EFW61211.1| Alanyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|332091817|gb|EGI96895.1| alanyl-tRNA synthetase [Shigella boydii 3594-74]
          Length = 876

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKDANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|15803211|ref|NP_289243.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|12517136|gb|AAG57801.1|AE005498_2 alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
          Length = 878

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/894 (43%), Positives = 553/894 (61%), Gaps = 56/894 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG 
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGT 855


>gi|288960191|ref|YP_003450531.1| alanyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288912499|dbj|BAI73987.1| alanyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 889

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/895 (50%), Positives = 587/895 (65%), Gaps = 37/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR TFL+FF K GH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y+ 
Sbjct: 1   MQTANDIRRTFLDFFAKQGHQIVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGAETRPYRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+L+TKE+ L
Sbjct: 61  AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAIAFAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TV+  DE+A  +W+K++GLS D+IIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PADKLLVTVHTSDEDAAAIWRKVAGLSDDRIIRIPTDDNFWRMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG P    E+G+R+IEIWNLVFMQ+EQ        LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQYEQLGPDNLVPLPKPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDL + LI AS + T    +G + V+HRVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLMRALIMASAEATKTAADGAHAVSHRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  EPLM  L+PAL  +MG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHMIGAREPLMHRLVPALIQQMGDAYPELNRARALIVETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  + HLG+ + L GDVAFKLYDT+G PLD+ QD+L  +   G+D   F 
Sbjct: 361 QTLERGLRLLEDEVGHLGEGQPLAGDVAFKLYDTYGFPLDLTQDVLRGQNR-GVDEAGFK 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQR +AR    G G   TEK+W+ +K++ GAT+F GYD                  
Sbjct: 420 AAMDEQRRKARESWAGSGEVGTEKLWYEIKDELGATEFFGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V AIV+    VE A  G +V VV +QTPFY E+GGQ+GD G     G 
Sbjct: 462 -----TEVAEGKVTAIVKGDTRVEAAAIGDQVMVVVNQTPFYGESGGQVGDAGVIFSAGG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + ++D  KK   ++ H   V +GIL     + L +D   R  +  NHSATHLLH AL 
Sbjct: 517 AEVAVSDTLKKLGAVWAHVGTVTKGILSVGDVVELRVDSSRRAAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS + P+ LRFD++    +T+A++ +IED VN  +  N  VVTR+M+ ++
Sbjct: 577 HRLGDHVTQKGSLVAPERLRFDISQPTGLTAADIAAIEDEVNRRVLANSEVVTRLMSPDE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESS 715
           A A GA AL G KY D VRVVS+    G     +S  LCGGTHV  TG+I +  IVSE +
Sbjct: 637 ARAQGAMALFGEKYGDEVRVVSMGGPHGELDRDYSIELCGGTHVRRTGDIGVFKIVSEGA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG  A++ L  +D  L   AS LKV    V  RV  + EE RK++   A
Sbjct: 697 VAAGVRRIEALTGTGAKAWLSERDHLLTEAASVLKVKPDEVPARVATLVEERRKMERELA 756

Query: 776 KRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + Q+ +              +A V   + ++  + +K+LK + D L+K++ SG+++L+
Sbjct: 757 DLRRQVAMGGGAKADGGNEAKDVAGVKLAARVVEGLPAKDLKPMADELKKQVGSGVVVLI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
             S E KAS++I VT+DL    +AVDL R+ A+ LGG GGGGRP MAQ+GGP+ +
Sbjct: 817 A-SNEGKASIVIGVTDDLTGSLSAVDLVRVGAEALGGKGGGGRPDMAQAGGPDAS 870


>gi|225852697|ref|YP_002732930.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|256263812|ref|ZP_05466344.1| alanyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|225641062|gb|ACO00976.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|263093940|gb|EEZ17874.1| alanyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409221|gb|ADZ66286.1| alanyl-tRNA synthetase [Brucella melitensis M28]
 gi|326538929|gb|ADZ87144.1| alanyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 885

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/893 (53%), Positives = 623/893 (69%), Gaps = 36/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKGKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG   +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL+   
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  + +L +         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 869


>gi|95928611|ref|ZP_01311358.1| alanyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
 gi|95135401|gb|EAT17053.1| alanyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
          Length = 880

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/909 (40%), Positives = 547/909 (60%), Gaps = 42/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+++F+K+GH  +PSSSLIP NDPTL+FTN+GM  FK++F G E   Y+ 
Sbjct: 1   MLTANEIRARFIQYFEKHGHRAVPSSSLIPHNDPTLLFTNAGMNQFKDLFLGAETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+  W+ LTKE  L
Sbjct: 61  ATSAQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKQDAIRFGWEFLTKEMKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
               L+++V+++D+EAF +W+   G+  ++I+R+   DNFW+M +TGPCGPCSEI  DQG
Sbjct: 121 PVEDLWVSVFEDDDEAFNIWRDEIGVREERILRLGEKDNFWAMGDTGPCGPCSEIHIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +R++E+WNLVFMQ+E+        LPK SIDTGMGLER+  V+Q
Sbjct: 181 EEMTCGPDCALGVCDCDRFLELWNLVFMQYERSADGTLSPLPKPSIDTGMGLERITAVVQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +NYD D  + +I   EQ+ G  Y  N    V+ RVI DH R+++FLIADG+LP+NEG
Sbjct: 241 GVKSNYDTDSLRAIIAHIEQLAGKTYGDNEDADVSMRVIADHSRATAFLIADGVLPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRIMRRA  +A++LG+ EP++      +   M  AYPEL +    + + +++E+E
Sbjct: 301 RGYVLRRIMRRAARHAKMLGFDEPVLFKTATFVMESMKDAYPELEERLDYVAKVVKNEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL  GL +L+  +  L      ++ GD  F+LYDT G P+D+  DI+       +D
Sbjct: 361 RFIQTLGNGLRILNEEIDTLKSKGQTVIPGDTVFRLYDTFGFPVDLTADIV-EGQNFTLD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +E+QR +AR +  G G      ++  L E+  + +F GYD             
Sbjct: 420 EAGFETCMEQQRQKARENWKGSGEEGIGAVYKQLAEQGMSCEFTGYD------------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++ G+ VE   +G+ VE++   TPFY E+GGQ GD G  
Sbjct: 467 ----------KCDDFGTVLALLKDGQQVESVSAGETVEIITSITPFYGESGGQSGDGGTL 516

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +G++  I++  K    + VH A ++ G L    +  L +D + R   ++NHSATH+L 
Sbjct: 517 TAEGVKATISETLKPLPNLHVHVATIDEGTLSVGQAAELHVDVEQRTACALNHSATHILQ 576

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L  +LG HV Q GS +TPD LRFD  H   +T  E++ +E+ VN  I +N  V+T +M
Sbjct: 577 AVLCEVLGDHVKQAGSQVTPDRLRFDFIHFSALTPEEIQQVEEKVNQRIRENAGVMTDVM 636

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N +DA+ +GA AL G KY D VRVV +     G  S  LCGGTHVS+TG I L  IV E+
Sbjct: 637 NTDDAVKAGATALFGEKYGDSVRVVRM-----GDFSMELCGGTHVSATGNIGLFKIVQEA 691

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A S +  Q++ +  LA+ +K     +  R++++ E  ++L+   
Sbjct: 692 GIAAGVRRIEAVTGSGALSTVREQEQMIGDLAALVKSDPSQLATRLKKLMEHQKELERQV 751

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +  + +L+ +           I +V  ++  I  +D K+L+   D L+ ++QSG+I+L G
Sbjct: 752 STLEDRLSADRAGNLMDQVQTIDNVKLLAVRIDNLDGKQLREQADKLRDQLQSGVIVLGG 811

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K ++L+ VT+DL +   A +L +  A+++ GG GGGRP +AQ+GG    + + A+
Sbjct: 812 V-NDGKVALLVSVTKDLTNTLKAGNLIKPLAEMV-GGRGGGRPDLAQAGGSQPEQLNNAL 869

Query: 890 AGVASFLKK 898
              A  + +
Sbjct: 870 EAAAGIVGE 878


>gi|209519489|ref|ZP_03268284.1| alanyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209500090|gb|EEA00151.1| alanyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 874

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/911 (41%), Positives = 539/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 KDKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LIQA+ + TG+   GNN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIQAAGRETGVTDLGNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL QA+  + + L  
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRLVADLVAQMGEAYPELAQAEQRVTDVLYQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIENGMSILEAALADLDAKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDEAMARQREQARAAGKFKMAQG-------LEYSGAKTTFHGYEEIVFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V++  +GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGASVQQVQAGQQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANASTRFAVVDTLKVQADVVGHHGTLEQGTLKVGDIVKAEIDAMRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ +DA+  GA AL G KY D VRV+ +        S  LCGGTHV+ +G+I    IV
Sbjct: 629 RVMSYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVNRSGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   + ++ + A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELEGRVNAAAAVLKAQPAELTQRIGQVQDQVKALE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             +I  V+ ++  +   D K L+  +D L+ K++S  I+
Sbjct: 743 KELSALKSKMASSQGDELAGQAVEIGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    +  
Sbjct: 803 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAQLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV ++++
Sbjct: 861 AALAGVKAWVE 871


>gi|114562241|ref|YP_749754.1| alanyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122300463|sp|Q085Z9|SYA_SHEFN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114333534|gb|ABI70916.1| alanyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 874

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/909 (42%), Positives = 544/909 (59%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FL++F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLKYFEDNGHQVVDSSSLVPTNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW  LT+   L +
Sbjct: 64  TSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EA+ LW +  G+ A+ +IRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDDEAYDLWTQKIGVPAENMIRIGDNKGGAFASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG P    E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+FK LI  + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFKQLIAKTAEIIGVTD--LENKSLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG  +     L+P L + MG A   L Q + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGANDAFFYKLVPTLISVMGDAAIGLKQTQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGLV+LDG L+ L   + L+GD  FKLYDT+G P+D+  D+   R    +D
Sbjct: 362 EEQFARTLERGLVILDGALNSLQ-GDTLDGDTLFKLYDTYGFPVDLTADVCRERD-INVD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + S       T F GY  L G         
Sbjct: 420 EAGFESAMAEQRSRAQAA------GNFGADYNSQLIIDAETAFSGYTELTGQPN------ 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+   G+ V+   +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 468 -----------------VIALYVDGKAVDTVKAGQDAVVVLDNTPFYAESGGQVGDKGLL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             DG+   + D QK           + +G L     L   +D + R +  +NHS THLLH
Sbjct: 511 TADGVVFTVADTQKFGPATGHQ-GQLAQGQLVIGQQLTAQVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHVSQ GS + P+ LRFD  H + +  +ELK++ED VN  I +N  + T  M
Sbjct: 570 AALRQVLGSHVSQKGSLVNPERLRFDFAHFEAVKPSELKAVEDLVNTQIRRNHELCTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+D+VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 AIDEAKEKGAMALFGEKYDDQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEN 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q   L   A  LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGIAAMAYIAEQQAMLDEAAQLLKSDSASVVVKLKAQLDKVKQLEKDL 744

Query: 775 AKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +L     +       +I  V  +   +  +D   L+ + D L++K++S II+L G
Sbjct: 745 SQLKDKLAAAASADMAGDAVEINGVKLLVKQLDGIDPGSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +K+ K +++  V+ DL  +  A +L  + A+ + GG GGGRP MAQ+GG        A+
Sbjct: 804 TAKDGKVNLIAGVSNDLTKKVKAGELVAMVAQHV-GGKGGGRPDMAQAGGTQPENLAAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 ALVEPWVNE 871


>gi|149915205|ref|ZP_01903733.1| alanyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
 gi|149810926|gb|EDM70765.1| alanyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
          Length = 887

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/912 (48%), Positives = 592/912 (64%), Gaps = 41/912 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL FF+KN H+++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MPTLNDIRSTFLNFFEKNDHQIVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVEHRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AWDLLTK+F +
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA  +WKK +GL  ++IIRI T+DNFWSM  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLVTVYHTDDEAADIWKKYAGLPEERIIRIATDDNFWSMGATGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ E+     +  L   SIDTGMGLER+  +LQ 
Sbjct: 181 PHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFEDGTQRDLDMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS  +T    +G   V+HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLLRALIEASANITDGAPDGPGNVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  +P+M  L+P+L T+MG AYPEL +A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHQLGAADPVMHRLVPSLVTQMGQAYPELGRAQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L  D  L G+ AFKLYDT G PLD+ QD L  +G + +D+  F+
Sbjct: 361 QTLDRGLRLLDDELDKLASDAPLPGEAAFKLYDTFGFPLDLTQDALREKGRS-VDVAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ+++ARA   G G      IW+ + E  G T F+GYD                  
Sbjct: 420 EAMSEQKAKARAAWSGSGEAADATIWYDIAEDKGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V+ G+ +E A  G++V++V +QTPFYAE+GGQ+GDTG    +G 
Sbjct: 462 -----TERAEGQIMALVRDGQRIEAASQGEEVQIVLNQTPFYAESGGQVGDTGVVRTEGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  +K  G+F+H A V  G +    +  L +D+  R  +  NHSA HLLH AL  
Sbjct: 517 AARITDT-RKVAGVFLHVAEVTEGRIVAGEAAQLEVDHTRRTAIRANHSAMHLLHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H+K +++ EL+ +E +VN  I QN  V TRIM  +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHAKALSAEELERVEADVNGFIRQNASVDTRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHV  TG+I +  +  
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGKLDGSGKGSDGRTYSIELCGGTHVRQTGDIGVFVVTG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           + +  AG+RRIEA+TG+ AR +L  Q  ++ +LA+ LK    +VV RV+ + +E ++L  
Sbjct: 696 DQASSAGVRRIEALTGEAARQYLSAQAHRVDALAAELKARPDDVVTRVKALMDERKQLAN 755

Query: 773 IHAKRKLQLNVEDLSCH-------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             A+ + +L +   +         +I  V F++ ++  V  K+L +++D  + ++ SG +
Sbjct: 756 EVAQLRRELAMAGGAGQGDGPEMREIGGVPFLAQVLRGVSGKDLPAIIDEHKARMGSGAV 815

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L+    + KA+V   VT+DL  R +AVDL R +  VLGG GGGGRP MAQ GGP+   A
Sbjct: 816 LLIA-DADGKAAVAAGVTQDLTGRVSAVDLVRAAVPVLGGKGGGGRPDMAQGGGPDAGNA 874

Query: 886 DQAIAGVASFLK 897
           + AI      L+
Sbjct: 875 EAAIKAAEQILE 886


>gi|118588631|ref|ZP_01546039.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Stappia aggregata
           IAM 12614]
 gi|118438617|gb|EAV45250.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Stappia aggregata
           IAM 12614]
          Length = 885

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/907 (51%), Positives = 629/907 (69%), Gaps = 36/907 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+ FL++F+ NGHE++ S  L+P NDPTLMF N+GM  FKN+FTG EK  Y  
Sbjct: 1   MTGVNEIRSAFLDYFKTNGHEVVESGPLVPRNDPTLMFANAGMNQFKNVFTGLEKRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L
Sbjct: 61  AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TV+ ED++AF LWKKI+GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PKEKLLVTVFAEDDQAFDLWKKIAGLSEDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ  ++ R  LP+ SIDTGMG+ER+A V+Q 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQTPEK-RLDLPRPSIDTGMGIERIAAVMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLFK LI AS   TG++ EG+   +HRVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 240 VHNNYDIDLFKALIAASVNATGVEAEGDATGSHRVIADHLRSTSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRR M +A LLG +EPLM  L+PAL  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 300 VLRRIMRRGMRHAHLLGASEPLMHKLVPALVREMGRAYPELSRAEDLITETLKLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD     L     L+G+ AFKLYDT+G PLD+ QD L       +D   FN
Sbjct: 360 KTLERGLGLLDTATEGLEAGGRLDGETAFKLYDTYGFPLDLTQDALR-TRDISVDTDGFN 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G GS  TE +WF+LKEK+GAT F+GY+                  
Sbjct: 419 AAMERQKAEARAAWSGSGSAATEAVWFALKEKHGATDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V  +    + V++  +G+   VV +QTPFY E+GGQ+GDTG  +  G+
Sbjct: 461 -----TETAEGVVAGLAADDKEVDKLSAGESGFVVLNQTPFYGESGGQVGDTGWMLASGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  +T+ QKKA+G+FVH   VE G L   ++L L +D+  R+ +  NHSATHL+H AL  
Sbjct: 516 KAAVTNTQKKADGLFVHSVTVEEGELVPGLALELKVDHSRRKAIRSNHSATHLVHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS +TP+ LRFD +H KP++  EL ++E   N+I+ QN PV TR+M  +DA
Sbjct: 576 VLGNHVAQKGSLVTPERLRFDFSHPKPVSDEELATVESFANEIVLQNAPVDTRLMAVDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I +GA AL G KY + VRVVS+       + G  +S  LCGGTHV  TG+I L+ +VSE 
Sbjct: 636 IEAGAMALFGEKYGEEVRVVSMGTALHGPKQGKPYSLELCGGTHVKRTGDIGLVTLVSEG 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG  AR +L  QD++++ LAS LK+S  +V  RV ++ E+ +KL+   
Sbjct: 696 AVAAGVRRIEALTGSEAREYLDAQDKRMRELASLLKISADDVPARVAQLVEDRKKLEREL 755

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L +   +       +      M+ ++  ++ K+LK + D  + ++ SG+++L+ 
Sbjct: 756 ADAKKKLAMGGGADGGTPVKEAGSFKLMARVVEGINPKDLKGMADEAKTQLGSGVVVLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++++ KA+++  VT+DL D+ +AVDL R+ ++ LGG GGGGRP MAQ+GGP+G KA QA+
Sbjct: 816 VAEDDKAAIVTAVTQDLTDKVSAVDLVRIGSEALGGRGGGGRPDMAQAGGPDGAKAAQAV 875

Query: 890 AGVASFL 896
           A + + L
Sbjct: 876 AVIEAHL 882


>gi|304310760|ref|YP_003810358.1| Alanyl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301796493|emb|CBL44701.1| Alanyl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 876

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/910 (42%), Positives = 549/910 (60%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL++F  NGH+++PSSSLIP NDPTL+FTN+GMV FK++F G++   Y+  
Sbjct: 1   MKTSEIRKAFLDYFAVNGHQIVPSSSLIPGNDPTLLFTNAGMVQFKDVFLGRDARDYRRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT  +   
Sbjct: 61  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPDAIRFAWEFLTGERWLK 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W +  G+  D+++RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTQQVGVPVDRVVRIGDNKGAPYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF++        LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGEEIFGGPPGSKDEDGDRYIEIWNIVFMQFDRHPDGTLNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF HL+ A  +VTG K       + RV+ DH+R+ +FLIADG++
Sbjct: 241 RIAAVLQHVHSNYEIDLFAHLLDAVAKVTGAKD--LQDKSLRVVADHIRACAFLIADGVV 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRIMRRA+ +   LG  EP    L+ AL  EMG AYPEL + +  IE+T+
Sbjct: 299 PSNEGRGYVLRRIMRRAIRHGNKLGAQEPFFYKLVAALAAEMGDAYPELRKLQAQIEKTI 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F +TLD+GL +L+  L+   +   + GD+ FKLYDT+G P D+  DI   R L+
Sbjct: 359 LQEEEQFARTLDQGLRILEQELT-AHQLTEIPGDLVFKLYDTYGFPADLTADIARERDLS 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D+  F Q +  Q+ R++  S   G+      +    +    T F GY    G      
Sbjct: 418 -LDMGGFEQRMAAQKERSQKSSQFAGN------YHDALDISTQTVFSGYSDTSG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V+A+  QG+ V    +GQ   VV DQTPFYAE+GGQ+GD 
Sbjct: 465 -----------------QAKVEALFFQGKPVSSVSAGQDAIVVLDQTPFYAESGGQVGDV 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G   ++ D  K+     +HH ++  G +     +   ++ + R+ + +NHSATH
Sbjct: 508 GLIRKAGACFEVADTHKQGG-AHLHHGVLVSGQISVGDVVEAEVNAELRQAIRLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +T   LRFD ++   ++ AEL+ IE  VND +  N  ++T
Sbjct: 567 LLHAALRQVLGEHVHQKGSMVTAGRLRFDFSNPSALSPAELEQIERIVNDQVRGNSEIIT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  + A A GA AL G KY D VRV+++        S  LCGGTH   TG+I L  ++
Sbjct: 627 EIMPIDQARAKGAMALFGEKYEDEVRVLTMGT---DCFSVELCGGTHARRTGDIGLFQLI 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + +  + ++L +++S +K +  NVVG+V  + E  R+L+
Sbjct: 684 SEGGVAAGVRRIEAVTGAAALALITNRHQQLVAISSAVKGNDENVVGKVTALVERVRQLE 743

Query: 772 LIHAKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               K+  Q      E++     ++A V  ++ ++   D+K L+ + D L+ K+   I++
Sbjct: 744 KELEKQSAQRASRAGEEIISQSFELAGVKVLAAVLENQDTKALREMCDKLRDKLGDAIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G S+E K +++  V++ L  +  A DL    A  + GG GGGRP MA +GG       
Sbjct: 804 L-GASQEGKVNLVAGVSKTLSSKVKAGDLVNHVASQV-GGKGGGRPDMATAGGSQPENLG 861

Query: 887 QAIAGVASFL 896
            AIA V  +L
Sbjct: 862 LAIASVRDWL 871


>gi|283786756|ref|YP_003366621.1| alanyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282950210|emb|CBG89846.1| alanyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 875

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 564/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+   +IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRARIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ + GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHVWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI A  +VTG      +  + RVI DH+RS +FL+ADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIDAVAKVTGATD--LSNKSLRVIADHIRSCAFLVADGVV 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + + L+E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVGPLIEVMGSAGEELKRQQALVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GY+ L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYEHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GDT
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQQAVVVLDQTPFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVSDTQKYG-QAIGHIGTLSAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H++ +  +E++++ED VN  I +NLPV T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKLLRFDFSHNEAMKPSEIRAVEDLVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NVMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAMATVHAQSDRLNEIAHLLKGDSQNLGDKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++ V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 AALASVEAWV 871


>gi|220934463|ref|YP_002513362.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995773|gb|ACL72375.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 865

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/903 (41%), Positives = 541/903 (59%), Gaps = 47/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +RT+FLE+F+  GHE++PSS LIP NDPTL+FTN+GMV FK++F G+E+  Y   
Sbjct: 1   MKSADLRTSFLEYFRSKGHEVVPSSPLIPGNDPTLLFTNAGMVQFKDVFLGREQRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   L 
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEYLTQVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-G 180
           + +L++TV++ED+EA  +W K  G++ ++  RI  +DNFWSM +TGPCGPC+EIF+D   
Sbjct: 121 EEKLWVTVFEEDDEAADIWLKDVGVNPERFSRIGASDNFWSMGDTGPCGPCTEIFYDHGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E   G       +G+RYIEIWNLVFMQ+++        LP+ S+DTGMGLER+A V+Q  
Sbjct: 181 EVPGGPPGTPEADGDRYIEIWNLVFMQYDRAKDGTLTPLPRPSVDTGMGLERLAAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF++LI+A   +           + RVI DH+RS SFL+ADG++PANEGRGYV
Sbjct: 241 HSNYEIDLFQNLIRAIRDMAKGAD--PTSPSLRVIADHIRSCSFLVADGVMPANEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  +   LG  EP    L+  L  EMG AYPEL++A+ ++E  LR E+ERF +
Sbjct: 299 LRRIIRRAARHGHKLGLDEPFFHRLVGPLVAEMGEAYPELVKAQPMVERVLRQEEERFAE 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++GL +L+  +  L   EI  G   F LYDT+G P+D+  DI   RGL  +D+  F  
Sbjct: 359 TLEKGLRILEEDIDGLKGTEI-PGKTIFVLYDTYGFPVDLTGDIARERGLT-LDMAGFEA 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E QR RARA          +  +    +  G + F GY+ L G               
Sbjct: 417 EMEIQRERARAA------SHFDADYHRKLKIEGESAFTGYEHLDG--------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      V A+ + GE V+   SG+   VV D+TPFYAE+GGQ+GDTG  + +G+ 
Sbjct: 456 --------QGRVTALFKDGEPVDALASGEHGLVVLDETPFYAESGGQVGDTGELLAEGVI 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++TD +K       H   V  G +     L   ++   R+ + +NHSATHL+H AL  I
Sbjct: 508 FEVTDTRKHGA-AHAHMGRVVEGRIAQGDVLGAKVNQARRQAVVLNHSATHLMHAALREI 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS + PD LRFD +H +P+++ EL+ IE  VN+ I  N     RIM  + A+
Sbjct: 567 LGDHVQQKGSLVAPDRLRFDFSHFQPVSAEELERIERRVNEAIRANAEAEARIMPIDQAL 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA AL G KY D VRV+S+        S+ LCGGTHV  TG+I +  I+SES + +GI
Sbjct: 627 ESGAMALFGEKYGDEVRVLSMGG-----FSTELCGGTHVRRTGDIGVFKILSESGVASGI 681

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A +++   ++ L  +A  +K  +G++  +V  + E  R+L+      K +
Sbjct: 682 RRIEAVTGENALNYIGETEKNLSRIAEMVKAGRGDLDEKVALLVERSRQLEKELEALKGK 741

Query: 781 LNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L             ++  +  ++  +   D K L+  +D L+ K+    ++L  + K+ K
Sbjct: 742 LASAAGSSLADQAVEVNGIKVLAANLEGADPKSLRDTVDQLKNKLGEAAVVLATV-KDGK 800

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+    R  A +L    A+ + GG GGGRP MA +GG + +    A+A V  +
Sbjct: 801 VSLVAGVTQGQTARLKAGELVNAVAQQV-GGKGGGRPDMAMAGGTDPSGLPGALASVPDW 859

Query: 896 LKK 898
           +++
Sbjct: 860 VRE 862


>gi|33152493|ref|NP_873846.1| alanyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
 gi|38372509|sp|Q7VLK0|SYA_HAEDU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33148716|gb|AAP96235.1| alanyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 874

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/911 (41%), Positives = 543/911 (59%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSS+L+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFNSKGHTVVPSSALVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ AW+ LT  K  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFAWEFLTSEKWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+ ++ IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 HLPKEKLYVTVYETDDEAYDIWHKTVGVPSEHIIRIGDNKGVPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPG++ E+G+RYIE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGESFWGGLPGTAEEDGDRYIEVWNIVFMQFNRQADGTLAKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +     +  + RVI DH+R+ S+LI DG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLHVAD--LDNKSLRVIADHIRACSYLIVDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   MG A   L   +  I++T
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLAKVMGQAGEILTDKQSYIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ +  ++ L+G+VAFKLYDT+G PLD+  D+   R  
Sbjct: 359 LKTEEEQFARTLERGLALLEEALTKVE-NQTLSGEVAFKLYDTYGFPLDLTADVCRERD- 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  SF   +  QR RA++ S           + S+ +    T FIGYD         
Sbjct: 417 IVIDEASFEIEMTAQRERAKSSSNFG------ADYNSVIKVEAETAFIGYDCF------- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ V++  SG+   VV D+TPFYAE GGQ+GD
Sbjct: 464 ----------------NAEAKVIALFSNGQAVDKVQSGESAVVVLDKTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       +  + D QK    +F H   V  G L     +   +D   R+ ++ NHSAT
Sbjct: 508 SGLITTAFCQFAVADTQKYG-QVFGHIGQVVSGSLAIGDIISAQVDIARRQAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS ++ + LRFD + S+ ++ A+L+ IE  VN  I QNL V 
Sbjct: 567 HLLHSALRQVLGEHVVQKGSLVSENVLRFDFSQSQAVSKAQLEEIERIVNRQIRQNLAVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   G  AL G KY D VRVV +        S  LCGGTHV  TGEI L  +
Sbjct: 627 IETMDIETAKEKGTVALFGEKYGDVVRVVGMT-----DFSIELCGGTHVKHTGEIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SES++ AGIRR+EA+T + A + L  Q + +   A  LK    ++V ++ ++ ++ ++ 
Sbjct: 682 ISESAVAAGIRRVEALTAENAINWLHNQQKIIHQSAELLKTDSLSLVDKIYQLQDKIKRN 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +L  +          +I  +N +   +  ++SK L++++D L+ ++ S I+
Sbjct: 742 EKELQHFKDKLAAQAGAELAKQVVQINGINVVIQKLEGIESKSLRTMVDDLKNQLSSVIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   +S + K ++++ VT+DL ++ NA +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 VFGSVSAD-KVNLIVGVTKDLSNKVNAGELVGLIAQQV-GGKGGGRPDMAMAGGTEPQHL 859

Query: 886 DQAIAGVASFL 896
           D A+A    ++
Sbjct: 860 DTALAFAKQWI 870


>gi|315122762|ref|YP_004063251.1| alanyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496164|gb|ADR52763.1| alanyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 906

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 661/901 (73%), Positives = 776/901 (86%), Gaps = 4/901 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M N+ SIR TFL+FFQK  H++L SSSLIP NDPTLMFTN+GMV FKNIFT QEK  Y+ 
Sbjct: 1   MRNLGSIRKTFLDFFQKREHKILDSSSLIPHNDPTLMFTNAGMVQFKNIFTSQEKRSYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKCVRAGGKHNDLDNVGRT RHHTFFEMLGNFSFG YFKERAI+LAW+LLTKEFD+
Sbjct: 61  AATVQKCVRAGGKHNDLDNVGRTTRHHTFFEMLGNFSFGDYFKERAIKLAWELLTKEFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D RR+ +TVYD DEEAF LWKKISGL ++KIIR+   DNFWSMA+TGPCGPCSEIFFDQG
Sbjct: 121 DCRRIVVTVYDGDEEAFNLWKKISGLPSNKIIRVAGKDNFWSMADTGPCGPCSEIFFDQG 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E   GGLPGS+E G+RY+EIWNLVFMQFEQ++++ER ILP MSIDTGMGLER++ VLQ K
Sbjct: 181 EGFLGGLPGSAEAGDRYLEIWNLVFMQFEQKSQKERCILPSMSIDTGMGLERISAVLQGK 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           T+NYDIDLFK LIQASEQ+TG+KY+G++I+NHRVIVDHLRSSSFLIADGILP NEGRGYV
Sbjct: 241 TDNYDIDLFKTLIQASEQITGVKYKGDDIINHRVIVDHLRSSSFLIADGILPTNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAMCYARLLGY +PLMM L P LC+EMGSAYPELIQA+LLIEETL+ ED RF K
Sbjct: 301 LRRIMRRAMCYARLLGYEDPLMMRLFPVLCSEMGSAYPELIQAQLLIEETLKVEDMRFSK 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD+G+ LLD V S L K+ IL+G VAFKLYDTHGLPLDIMQDIL ARGL G+D+ SF Q
Sbjct: 361 TLDKGIYLLDEVSSSLEKNAILDGSVAFKLYDTHGLPLDIMQDILWARGLGGVDVASFKQ 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK----VL 476
           +LEEQRS+AR+H LGLG   TEKIWFSLKEKYG TQF+GY++  GSK +  D K     L
Sbjct: 421 SLEEQRSKARSHCLGLGEKITEKIWFSLKEKYGTTQFVGYNIHHGSKVIAGDEKKGDYSL 480

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
            QKP +D T G+ +IVKAIV Q  IV+ A +GQKVEV+FDQTPFYAE+GGQ+GDTG A+G
Sbjct: 481 SQKPSVDFTQGIPAIVKAIVLQDSIVDVARAGQKVEVLFDQTPFYAESGGQVGDTGIAVG 540

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G+ LQITDVQKK  GIFVHHA +E G+LRTEM ++LTI+YQ+RRQLSINHSATHLLH A
Sbjct: 541 EGVSLQITDVQKKVGGIFVHHATIEHGVLRTEMPIILTINYQDRRQLSINHSATHLLHAA 600

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L TILG HVSQ GS I P+ LRFD+ HSKPIT  E+K I+D++ND+IAQN  ++TRIMN 
Sbjct: 601 LRTILGPHVSQKGSHIIPERLRFDIVHSKPITREEIKLIQDHINDVIAQNYSIITRIMNI 660

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DAIASG++AL G KY+D+VRVVS+E +DG V++S LCGGTHVSSTGEIML++IVSES++
Sbjct: 661 DDAIASGSSALFGKKYSDKVRVVSIESDDGRVYASELCGGTHVSSTGEIMLVHIVSESAV 720

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AGIRRIEA++GQRARS+L+ QDEK++SLASFLKV   NVV RVEEIWEE R+L LI+AK
Sbjct: 721 SAGIRRIEAVSGQRARSYLVEQDEKVRSLASFLKVQPSNVVKRVEEIWEERRELHLINAK 780

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            KL+LNV+DLSCH IA+VNFMSH+I + D KELK ++D LQKKI+SGIIML+G+SKEKKA
Sbjct: 781 HKLKLNVDDLSCHTIANVNFMSHVIPDADFKELKGLIDMLQKKIKSGIIMLIGVSKEKKA 840

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           SV+I VT+DL+DRFNA++L RL+AKVLGG GGGGRP+MAQSGGP+GNK DQ+IA + SFL
Sbjct: 841 SVVIAVTQDLIDRFNAINLVRLAAKVLGGSGGGGRPNMAQSGGPDGNKVDQSIANIVSFL 900

Query: 897 K 897
           K
Sbjct: 901 K 901


>gi|89075063|ref|ZP_01161504.1| alanyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89049150|gb|EAR54715.1| alanyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 874

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/909 (41%), Positives = 536/909 (58%), Gaps = 55/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGLEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIGYAWEFLTSVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLVVTVYETDDEAFDIWNKEIGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG P    E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQVDGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+F+ LI+ + +V G +    +  + RV+ DH+RS ++LI+DG++P
Sbjct: 243 IAAIMQGVHSNYEIDIFQTLIKEAAKVIGFED--LSNQSLRVVADHIRSCAYLISDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL   + L+E+ L+
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAEGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E++ FG+TLDRGL +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG   
Sbjct: 361 IEEDNFGRTLDRGLTILNEALDKLD-GKVLDGETVFKLYDTYGFPADLTNDVARERGFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR RAR       +G     + +  +    T F GY    G       
Sbjct: 419 IDEDGFEAAMEEQRQRAR------DAGNFGVDYNNAIKVDAETVFCGYSATDG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S + A+ + G  V+   +G++  VV   TPFYAE+GGQ GD+G
Sbjct: 466 ----------------ESEIVALYRDGVAVDSVNAGEEALVVLTNTPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               + +   + D QK       H   V  G L     L  ++D   R  +S+NHSATHL
Sbjct: 510 ILTAEAVLFNVDDTQKFGA-AIGHKGQVAEGSLTVGQKLTASVDSARRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL TILG HVSQ GS +  DGLRFD ++ + +   +L+++E  VND I  N  + T 
Sbjct: 569 MHAALRTILGEHVSQKGSLVKADGLRFDFSNLEAVKPEQLRAVETMVNDQIRANHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGG H + TG+I L  I+S
Sbjct: 629 IMDIEAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG  +   +  +D  L   A  +K    +VV +VE +    ++L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGAASIEEMHNEDVMLAKTARLVKSDSASVVSKVEALVSHSKQLEK 743

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +I  V  +   ++  D+K L+ ++D L+ ++ SG+++L
Sbjct: 744 EIQQLKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +S + K  ++  VT+DL+ +  A +L  L A+ + GG GGGRP MAQ+GG +      
Sbjct: 804 GNVS-DDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPA 861

Query: 888 AIAGVASFL 896
           A+  VA +L
Sbjct: 862 ALETVAPWL 870


>gi|260460847|ref|ZP_05809097.1| alanyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259033424|gb|EEW34685.1| alanyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 888

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/910 (51%), Positives = 633/910 (69%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F++ GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRREGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKEF L
Sbjct: 61  ATTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 KKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI  +    G   +   + ++RVI DHLRSSSFL+ADG+LP+NEGRGY
Sbjct: 241 VESVFETDLFRHLIDVASSALGRAPDAETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLITETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      L   ++L+G+ AFKLYDT+G PLD+ QD L  +    +D+  F 
Sbjct: 361 KTLVRGLGLLSEATETLTAGDMLDGETAFKLYDTYGFPLDLTQDALR-QRSISVDLAGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++ AR H  G G   TE +WFS++EK GAT+F+GY+                  
Sbjct: 420 NAMEQQKAEARKHWTGSGEAATETVWFSVREKTGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+A+V+ G+ V+ A  G  V VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 462 -----TEQAEGLVQALVKDGKTVDSAGKGDAVAVVVNQTPFYGESGGQMGDTGIISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I+D QKKA+G+FVH   V  G ++   ++ L +D+  R +L  NHSATHL+H AL  
Sbjct: 517 SIEISDTQKKADGLFVHLGTVASGTVKVGAAVELKVDHARRSRLRANHSATHLIHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFD++H+KPI+  +L+ +E   N+I+ QN PV TR+++ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDISHNKPISPEDLEEVERMANEIVVQNGPVTTRLISVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV +TG+I L+ +VS+S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGVHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR HL  QD +LK+ A+ LK+S  +V  RVE + EE +KL+   
Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKATAAVLKISPADVPARVETLLEERKKLEKEL 756

Query: 775 AKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + + +L +              +A V F+  ++S V  K+LK + DA +  + SG+++ 
Sbjct: 757 TEARKKLALGGGAAAGAPSENETVAGVGFLGKMVSGVSPKDLKPLADAGKTSLGSGVVVF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG  ++ KASV++ VT+DL+ RF+AVDL R+++  LGG GGGGRP MAQ+GGP+ +KA  
Sbjct: 817 VGAGEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKAGD 876

Query: 888 AIAGVASFLK 897
           AIA V + L+
Sbjct: 877 AIAAVRAALE 886


>gi|254719259|ref|ZP_05181070.1| alanyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265984258|ref|ZP_06096993.1| alanyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306838009|ref|ZP_07470867.1| alanyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662850|gb|EEZ33111.1| alanyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306406933|gb|EFM63154.1| alanyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 885

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/893 (53%), Positives = 622/893 (69%), Gaps = 36/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAINFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG   +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 AAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+  
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEDF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V +G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL+   
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  + +L +         +   +  VNF+  I++ V   +LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVLPHDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGTGGGGRPDMAQAGGPD 869


>gi|116048827|ref|YP_792373.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122257933|sp|Q02I63|SYA_PSEAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115584048|gb|ABJ10063.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 874

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/912 (43%), Positives = 552/912 (60%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLAELQ-GSVIPGNVVFKLYDTYGFPVDLTNDIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + +E QR RARA S           + SL +  G T+F+GY  + G+     
Sbjct: 418 -IDEDGFEREMEAQRERARASSAFGM------DYNSLVKVDGETRFLGYQGVSGA----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD+
Sbjct: 466 ------------------GQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+R  + D  K      +HH +V RG L    ++   +D   R+  ++NHSATH
Sbjct: 508 GYLEAAGVRFDVRDTTKAGG-AHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I + +LK++ED VN  I +N  V T
Sbjct: 567 LLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I 
Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +           +  +I     ++  +  +D K L +++D L+ K+   +I+
Sbjct: 743 KELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   + K  ++  VT+DL  +  A +L + +A  +GG G GGRP MAQ GG N  K D
Sbjct: 803 LGG-ELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKG-GGRPDMAQGGGTNAAKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A    F+++
Sbjct: 861 EALALAQRFVEQ 872


>gi|91976212|ref|YP_568871.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
 gi|123735560|sp|Q13AB9|SYA_RHOPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91682668|gb|ABE38970.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
          Length = 891

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/901 (51%), Positives = 612/901 (67%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSAFLNYFAKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKE+ L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY ED+EAF LWKKI+GL   KIIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLVTVYSEDDEAFGLWKKIAGLPESKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIFGGPPGSLEEDGDRFIEIWNLVFMQFEQVAPGNRTPLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+IDLF+ LI+A  ++TG   +G    + RVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYEIDLFQALIRAIAELTGADPQGEQKGSLRVIADHLRAASFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM + +LLG  EPLM  L+ AL  EMG AYPEL++A+ +IEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAEAMIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L K ++ +GD AF LYDT+G PLD+ QD L  RG   +DI SF 
Sbjct: 361 KTLERGLTILDEKSGSLKKGDMFDGDTAFTLYDTYGFPLDLTQDALRNRG-ISVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WF L++K GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATETVWFGLRDKLGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G+ VE   +G    +V +QTPFYAE+GGQ+GDTG   G+G+
Sbjct: 462 -----TETAEGVVTALVKDGKEVEALKAGDAGAIVLNQTPFYAESGGQVGDTGVLTGEGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD  KKA  +FVH   VE G ++ E +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTDTLKKAGDLFVHFGTVEEGTVKPEAALALEVDHSRRSSIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQKGSMVAPDRLRFDFVHQKPITQDELRRVEDIANDIVLENDEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ +  E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKASREHGSNAFGWSVELCGGTHVRRTGDIGLISVTGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG+ AR          K+ A+ L+ +  ++  R+  + +E +KL+  
Sbjct: 697 SAVASGVRRIEALTGRHARQSANAAMATAKAAAAELRTTLDDMPARIASLMDERKKLERE 756

Query: 774 HAKRKLQLNVEDLS----------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +  + +L +                 +  V  ++  +  ++ K+LKS++D  +K++ SG
Sbjct: 757 LSDARKKLAMGGSGAAGAADGGADVRDVGGVKLLARAVEGIEIKDLKSLVDQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I LV  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+
Sbjct: 817 VIALVAKSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGS 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|237809468|ref|YP_002893908.1| alanyl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|237501729|gb|ACQ94322.1| alanyl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 874

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/910 (42%), Positives = 541/910 (59%), Gaps = 53/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IRT FLE+F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +   Y   
Sbjct: 3   MTTSEIRTAFLEYFRSQGHQVVDSSSLVPHNDPTLLFTNAGMNQFKDVFLGGDIRPYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LTK   L 
Sbjct: 63  TTAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWDFLTKVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           Q +L +TVY  D+EA+ +W    G+SAD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 QEKLLVTVYATDDEAYGIWANEIGVSADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+R+IEIWN+VFMQF +Q       LPK S+DTGMG+ER+
Sbjct: 183 IFYDHGADIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTLEPLPKPSVDTGMGIERV 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+FK LIQ + ++ G+        + RVI DH+RS SFLI+DG++P+
Sbjct: 243 SAIMQGVHSNYEIDIFKTLIQNAAKIVGVTD--LENKSLRVIADHIRSCSFLISDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ + R LG T+     L+ AL   MG AYPEL   + ++E  L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGRKLGATDTFFYQLVGALVALMGEAYPELKSQQPVVERVLKL 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TLDRGL LL+  L  LG    + G V FKLYDT+G P D+  D++  RG   I
Sbjct: 361 EEEQFVRTLDRGLSLLEEELVRLGDVREIPGSVVFKLYDTYGFPADLTADVVRDRGYT-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F Q +E+QR RA+       +      +    +    + F GY+            
Sbjct: 420 DEAAFQQEMEKQRERAK------DASHFAVDYNKQLKIEQTSDFCGYERT---------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          ++ + AI    ++V     G +  +V + TPFYAE+GGQ+GD G 
Sbjct: 464 -------------IANTTITAIYLADQLVSTLKDGDQALIVLENTPFYAESGGQMGDAGL 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    +TD  K  + I      VE+G  +T  ++   +D   R   +++HSATHLL
Sbjct: 511 LRVGDALFAVTDTHKIGQAIVHK-GFVEQGSFKTGDTVEAIVDNTRRNATALHHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL   LG HV+Q GS + PD LRFD +H + I  A L+ IE +VN  I +N+ + T++
Sbjct: 570 HAALRNALGEHVAQKGSQVGPDRLRFDFSHFEAINPAALRQIEQSVNAEIRKNVLIDTQL 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ +DA  SGA AL G KY D VRVV +     G  S+ LCGGTH   TG+I    I+SE
Sbjct: 630 MSLDDAKTSGAMALFGEKYGDEVRVVKM-----GDFSTELCGGTHAKHTGDIGFFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + + AG+RRIEA+ G+ A +H+    E+L   AS +K    +VV ++ ++ E  R L+  
Sbjct: 685 NGVAAGVRRIEAVAGEAALAHIHQLGEQLDEAASIVKADALSVVSKIRQMQERSRLLERE 744

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L  +          +I     +   +  VD+K L++ MD L+ ++QS ++ML+
Sbjct: 745 IETLKAKLASQAGNDLLSQIMQINGQQVLVAQVEGVDAKSLRTTMDDLKNRLQS-VVMLL 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + K S++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG +      A
Sbjct: 804 AAVNDGKVSLIAGVTADLTSKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDATALPGA 862

Query: 889 IAGVASFLKK 898
           +  V S+L++
Sbjct: 863 LKSVQSWLEE 872


>gi|313105787|ref|ZP_07792050.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|310878552|gb|EFQ37146.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 874

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/912 (43%), Positives = 552/912 (60%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLAELQ-GSVIPGNVVFKLYDTYGFPVDLTNDIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + +E QR RARA S           + SL +  G T+F+GY  + G+     
Sbjct: 418 -IDEDGFEREMEAQRERARASSAFGM------DYNSLVKVDGETRFLGYQGVSGA----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD+
Sbjct: 466 ------------------GQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+R  + D  K      +HH +V RG L    ++   +D   R+  ++NHSATH
Sbjct: 508 GYLEAAGVRFDVRDTTKAGG-AHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I + +LK++ED VN  I +N  V T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I 
Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +           +  +I     ++  +  +D K L +++D L+ K+   +I+
Sbjct: 743 KELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   + K  ++  VT+DL  +  A +L + +A  +GG G GGRP MAQ GG N  K D
Sbjct: 803 LGG-ELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKG-GGRPDMAQGGGTNAAKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A    F+++
Sbjct: 861 EALALAQRFVEQ 872


>gi|15596100|ref|NP_249594.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|107100361|ref|ZP_01364279.1| hypothetical protein PaerPA_01001386 [Pseudomonas aeruginosa PACS2]
 gi|218893128|ref|YP_002441997.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|20532264|sp|Q9I553|SYA_PSEAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|9946804|gb|AAG04292.1|AE004524_9 alanyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|218773356|emb|CAW29168.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
          Length = 874

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/912 (43%), Positives = 552/912 (60%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLAELQ-GSVIPGNVVFKLYDTYGFPVDLTNDIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + +E QR RARA S           + SL +  G T+F+GY  + G+     
Sbjct: 418 -IDEDGFEREMEAQRERARASSAFGM------DYNSLVKVDGETRFLGYQGVSGA----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD+
Sbjct: 466 ------------------GQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+R  + D  K      +HH +V RG L    ++   +D   R+  ++NHSATH
Sbjct: 508 GYLEAAGVRFDVRDTTKAGG-AHLHHGVVARGNLSVGGAVKAEVDASVRQATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I + +LK++ED VN  I +N  V T
Sbjct: 567 LLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I 
Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +           +  +I     ++  +  +D K L +++D L+ K+   +I+
Sbjct: 743 KELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   + K  ++  VT+DL  +  A +L + +A  +GG G GGRP MAQ GG +  K D
Sbjct: 803 LGG-ELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKG-GGRPDMAQGGGTDAAKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A    F+++
Sbjct: 861 EALALAQRFVEQ 872


>gi|296390743|ref|ZP_06880218.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
          Length = 874

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/912 (43%), Positives = 552/912 (60%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLAELQ-GSVIPGNVVFKLYDTYGFPVDLTNDIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + +E QR RARA S           + SL +  G T+F+GY  + G+     
Sbjct: 418 -IDEDGFEREMEAQRERARASSAFGM------DYNSLVKVDGETRFLGYQGVSGA----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD+
Sbjct: 466 ------------------GQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+R  + D  K      +HH +V RG L    ++   +D   R+  ++NHSATH
Sbjct: 508 GYLEAAGVRFDVRDTTKAGG-AHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I + +LK++ED VN  I +N  V T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I 
Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +           +  +I     ++  +  +D K L +++D L+ K+   +I+
Sbjct: 743 KELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   + K  ++  VT+DL  +  A +L + +A  +GG G GGRP MAQ GG +  K D
Sbjct: 803 LGG-ELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKG-GGRPDMAQGGGTDAAKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A    F+++
Sbjct: 861 EALALAQRFVEQ 872


>gi|88798293|ref|ZP_01113879.1| Alanyl-tRNA synthetase [Reinekea sp. MED297]
 gi|88779069|gb|EAR10258.1| Alanyl-tRNA synthetase [Reinekea sp. MED297]
          Length = 868

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/903 (41%), Positives = 539/903 (59%), Gaps = 45/903 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FLEFF+K+ H ++P+ SL+P +DPTL+FTN+GM  FK++F G ++  Y   
Sbjct: 1   MKTSEIRRRFLEFFEKHEHRVVPAGSLVPGDDPTLLFTNAGMNQFKDVFLGTDRRDYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+E  L 
Sbjct: 61  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWTFLTEELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L++TVY +D+EA  +W    G+  +++ R+   DNFW M +TGPCGPCSEIF+D GE
Sbjct: 121 KEKLWVTVYQDDDEAADIWINDIGVDPNRLSRLGDKDNFWMMGDTGPCGPCSEIFYDHGE 180

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS ++  +RYIEIWNLVFMQF+      R  LPK S+DTGMGLER+A +LQ  
Sbjct: 181 EVPGGPPGSPDDDLDRYIEIWNLVFMQFDTLADGSRVPLPKPSVDTGMGLERLAAILQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI+A+ +VTG         + RVI DH+RS++FLIADG++P+NEGRGYV
Sbjct: 241 HSNYEIDLFQALIRAAMRVTGCTDI--ENRSLRVIADHIRSTAFLIADGVIPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +  +  L+  L  +MG AYPEL +    + + L+ E+E+F +
Sbjct: 299 LRRIIRRAVRHGYKLGCQDLFLFKLVDDLVDQMGEAYPELAEQADHVRKVLKIEEEQFAR 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+ G+ +L+  ++ +    ++ G++ FKLYDT+G P D+  D+   +GL  ID   F  
Sbjct: 359 TLENGMTILEQGIADIE-GNVIPGELVFKLYDTYGFPADLTADVAREKGL-DIDQDGFES 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQR RA++ +        +          GAT F+GY+ L                 
Sbjct: 417 RMAEQRKRAQSANKFKMDRDLD------LALDGATNFLGYETL----------------- 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      V  +++  + V +   G +  V+ DQTPFYAE+GGQ GD G    +   
Sbjct: 454 ------AAEGQVIRLLRGEDTVSQLSVGDEGVVILDQTPFYAESGGQAGDRGVITTEAAS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           L++ D QK     F+H   V  G+L+T+  +   +    R   + +HSATHLLH AL  +
Sbjct: 508 LEVIDCQKHQGH-FLHQVRVTDGVLKTDDRVAAKVQRNERENTARHHSATHLLHAALREV 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+HV Q GS +T D LRFD +H + +T+ EL  IE  VN  I  N  V T +M+ + A 
Sbjct: 567 LGTHVQQRGSLVTHDKLRFDFSHLEAVTAEELVQIETLVNHHIMANAEVTTELMDIDSAK 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A+GA AL G KY+D+VRV+++       +S  LCGGTHV  TG+I L  IV+ES I AGI
Sbjct: 627 AAGAVALFGEKYDDQVRVLTMGE---DAYSKELCGGTHVQRTGDIGLFRIVAESGIAAGI 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RR+EA+ G  A + +  +D  +  L+   K S   +  +V++     + L+   +K K +
Sbjct: 684 RRVEAVAGPYALAEIRQRDAVVNRLSGQFKCSVDQLESKVQQAVAHSKDLEKELSKLKDK 743

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L              +  V  ++  +  VD+K L+S MD ++ K+ S +I++V +  E K
Sbjct: 744 LASAAAGDLTSEVKDVQGVKVLAVRLDGVDAKSLRSTMDQMKSKLGSAVILIVAVDGE-K 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +   VT+DL   F A +L +     L G  GGG+P MA +GG + NK   A+  V ++
Sbjct: 803 VQLAAGVTKDLTATFKAGNLIKDVGA-LMGAKGGGKPDMAMAGGGDINKIPDALQAVPTW 861

Query: 896 LKK 898
           +++
Sbjct: 862 VEQ 864


>gi|254448289|ref|ZP_05061751.1| alanyl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198262156|gb|EDY86439.1| alanyl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 868

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/904 (41%), Positives = 548/904 (60%), Gaps = 45/904 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ ++IR  FL++F   GH ++PSSSL+P  D TL+FTN+GMVPFK++F GQE+  Y  
Sbjct: 1   MTSSANIRKQFLDYFASKGHAVVPSSSLVPAGDDTLLFTNAGMVPFKHVFLGQEQRDYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI   W+ LT+   L
Sbjct: 61  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYGWEFLTQVVGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV++ED+EA  +W K  G+  D++ RI   DNFW M +TGPCGPC+EIF+D G
Sbjct: 121 PKEKLWVTVFEEDDEAADIWLKEIGVDPDRLSRIGAKDNFWQMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG P    E+G+RYIE+WNLVFMQ+ +        LPK S+DTGMGLER+A +LQ 
Sbjct: 181 EHIWGGPPGTPEEDGDRYIEVWNLVFMQYNRSQDGTLTPLPKPSVDTGMGLERLAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI A+ +  G++   + I +  VI DH+RS +FL+ DG+LP+NEGRGY
Sbjct: 241 VHSNYEIDLFQALIHAAGKAVGVEKPSHEISSLNVIADHIRSCAFLVVDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  +   LG  +P    L+  L  +MG AYPEL +++  +E+ L+ E+ERF 
Sbjct: 301 VLRRIIRRACRHGYKLGQNQPFFYTLVEELVAQMGEAYPELSESQARVEQVLKKEEERFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL +G+ +L+  +  L  + I  G+  F+LYDT+G P+D+  DI     L  ID+  + 
Sbjct: 361 ETLSQGMGILNQAIDSLDGERI-PGETVFQLYDTYGFPVDLTADIAREHEL-DIDLEGYE 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +EEQR RARA S                E    ++F GY+ L                
Sbjct: 419 ACMEEQRQRARAASQFG------ADLSERIEFSEESEFTGYEHLNH-------------- 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     +++  ++  G  VE    GQ+  VV + TPFYAE+GGQ+GD G  + +G+
Sbjct: 459 ---------EAVISHLIVDGSEVERIAEGQQGMVVLNSTPFYAESGGQVGDRGVLVSEGV 509

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ D QK+     VH   +E G L    +++  +D   RR   +NHSATHL+H AL  
Sbjct: 510 RFRVDDTQKQGG-AIVHIGHLECGELSLNDNILAEVDMAKRRATELNHSATHLMHWALRE 568

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +  + LRFD +H +P+T +EL  +ED VN  I +N    TR+M  EDA
Sbjct: 569 VLGDHVQQKGSLVNEEYLRFDFSHFQPMTDSELAQVEDLVNAEILKNRATQTRLMTMEDA 628

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA AL G KY D VRV+++     G HS  LCGGTHV  TG+I L  ++ E  + +G
Sbjct: 629 KAAGAMALFGEKYGDEVRVLNI-----GDHSIELCGGTHVDRTGDIGLFKLIGEGGVASG 683

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RR+EAITG  A+  +   D+ ++ LA+ L+  +G+V  +VE++ ++ R+L+    + K 
Sbjct: 684 VRRVEAITGIAAQQWVRQTDDTVRQLAARLRTDRGSVADKVEQLADKNRQLEKELERLKS 743

Query: 780 QLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L  +          +I  +  ++  +   D+K L+S +D L+ K+ +  I+L     + 
Sbjct: 744 KLASQAGGDIASQAVEIDGIKVLATALEGADTKVLRSTLDQLKDKLGAAAIVLGAADGD- 802

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  ++  VT+    R  A +L    A  +GG G GGRP MAQ+GG +    + A+A V +
Sbjct: 803 KVRLVAGVTKSETSRIKAGELVNHVAVQVGGRG-GGRPDMAQAGGSDPAALEGALASVET 861

Query: 895 FLKK 898
           ++++
Sbjct: 862 WVRE 865


>gi|167623167|ref|YP_001673461.1| alanyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|205830204|sp|B0TK15|SYA_SHEHH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167353189|gb|ABZ75802.1| alanyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 874

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/907 (42%), Positives = 549/907 (60%), Gaps = 54/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPANDPTLLFTNAGMNQFKDVFLGADKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW  LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIHFAWTFLTEELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG P    E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMKPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ +  + G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAAILGVTD--LENKSLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + + ++E++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATESFFYKLVPTLIEVMGDAAKGLQETQAIVEKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALNELT-TKVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQR RA+A       G  +  +    +    + F GY  L           
Sbjct: 420 EAGFEAAMAEQRKRAQAA------GQFDTDYNEGLKIDEQSSFTGYTEL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI + GE  E   +G +  +V D TPFY E+GGQ GD G  
Sbjct: 463 ------------NNQATVTAIFKSGEAAETITAGDEAVIVLDNTPFYGESGGQSGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I DGI   + D QK       H   V  G ++   SL   +D + R +  +NHS THLLH
Sbjct: 511 IADGIEFTVIDTQKYG-QAIGHIGRVVTGEIKAGQSLTANVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN  I +N  +   +M
Sbjct: 570 AALRQVLGAHVSQKGSLVDPERLRFDFSHFEGVKANELKEVEELVNTQIRRNHELTAEVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A   GA AL G KY+  VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DIETAKEKGAMALFGEKYDSEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAKQQAQLEEAATLLKGDSASVVAKLKAQLDKTKQLEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +L             ++  V  +   +  VD+  L+ + D L++K+QSGI++L  
Sbjct: 745 SQLKDKLAAATSADLAGEAVEVNGVKVLVKKLEGVDAGALRGLQDELKQKLQSGIVVLA- 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ E K ++++ VT+DL  +  A +L    A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 IAGEDKVNLIVGVTKDLTGKVKAGELVASIAVQV-GGKGGGRPDMAQAGGSQPENLDGAL 862

Query: 890 AGVASFL 896
             V  ++
Sbjct: 863 EQVIPWI 869


>gi|320173452|gb|EFW48651.1| Alanyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
          Length = 876

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K   +  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVEIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFDAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|283835574|ref|ZP_06355315.1| alanine--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291068784|gb|EFE06893.1| alanine--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 875

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/910 (43%), Positives = 563/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI++  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRSLIESVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVV 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVEVMGSAGDELKRQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++    GA++F GY+ L        
Sbjct: 420 -VDEEGFEAAMEEQRRRAREA------SGFGADYNAMIRVDGASEFKGYEHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ   VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFAFAVSDTQKYG-QAIGHIGKLSAGSLKIGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H++ +  AE++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKVLRFDFSHTEAMKPAEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH S TG+I L  IV
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A   +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIHTVHAQSDRLNDIAQLLKGDSQNIGDKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   +++V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDINGVKLLVSELADVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|114775361|ref|ZP_01450929.1| alanyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114553472|gb|EAU55853.1| alanyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 871

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/903 (44%), Positives = 549/903 (60%), Gaps = 42/903 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL++F   GH ++ SSSL+P  DPTLMFTN+GMV FK++F G E   Y+  
Sbjct: 1   MRTSEIRKKFLDYFAAEGHTIVDSSSLVPHGDPTLMFTNAGMVQFKHVFLGNESRPYRTA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT E  LD
Sbjct: 61  TTSQKCVRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKHDAIRYAWQFLTGELKLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ITV++ED+EA+ +W K  G+ AD+I RI   DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 PARLFITVFEEDDEAYDIWTKEVGIPADRIARIGAKDNFWSMGDTGPCGPCSEIFYDHGA 180

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PG++ E+G+RYIEIWNLVFMQ+++        LP  S+DTGMGLER+A V+Q  
Sbjct: 181 DVWGGPPGTAEEDGDRYIEIWNLVFMQYDRDEDGTLTPLPHPSVDTGMGLERVAAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            NNYDIDLF  LI A+  +TG++   +  + V+ RV+ DHLRS SFL+ADG+LP+NEGRG
Sbjct: 241 HNNYDIDLFARLIDAAGALTGVRMGDDPVSDVSLRVLADHLRSVSFLLADGVLPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           +VLRRI+RRA  + RLLG  E  +  L+ AL  EMG  + EL +++  IE+ +R E+ERF
Sbjct: 301 FVLRRILRRACRHGRLLGMYEAFIYKLVDALVAEMGDHFAELKESQGNIEQVIRIEEERF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTLD+GL L++   +  GK   + G+  F LYDT G P D+  DIL       +D+  F
Sbjct: 361 IKTLDKGLKLVEQAAASAGKGGTIPGETLFALYDTFGFPTDLTADILKGTD-ISLDMDGF 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + +EEQR+RARA   G G     K  F L+E +G T+F+GYD L               
Sbjct: 420 ERCMEEQRTRARAAWGGSGESALPKALFELREHHGPTEFLGYDTLSS------------- 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                       ++  +++ GE V+   +G++  ++ +QTPFYAE+GGQ GDTG      
Sbjct: 467 ----------EGVITGLIRDGEAVDTLHAGEEGWLIANQTPFYAESGGQAGDTGLITIGD 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              +++D +K    +FVH   V +G       +   +D   R  +  NH+ATHL+H  L 
Sbjct: 517 AIFEVSDTRKMLSDLFVHTGKVVKGSFEAGSVVHFAVDEDRRAAIRRNHTATHLMHAVLR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +    LRFD  H KP++  E K IE  VN  I  N PV T++M++++
Sbjct: 577 KVLGEHVKQAGSLVNEQRLRFDFNHFKPVSEEERKVIEAEVNAAIWANDPVETKLMSQDE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ASGA AL G KY D VRVVS         S+ LCGGTHVS+TG+I    IVSE+ I A
Sbjct: 637 AVASGAMALFGEKYGDEVRVVSAG------FSTELCGGTHVSATGDIGPFRIVSEAGIAA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG  A   L+     L+  A  LKV        V  +  + +  +      +
Sbjct: 691 GVRRIEAVTGSAAYQSLVADIHTLEEAAGHLKVRPFEAADAVVTLQGKLKDAEKELTSLR 750

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            + +   L        ++  V  ++  +S V  K+++  MD  + K++SG I++ G+   
Sbjct: 751 AKQSTGLLDDLIKQAVEVNGVKLLAVEVSGV--KDMRDFMDKAKGKLKSG-ILVFGMKNG 807

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K  ++  VT+DLL  ++A ++ R  A ++ GG GGG+P MA +GG   +K  QA+AGVA
Sbjct: 808 PKVQLIAGVTQDLLGSYHAGNIVREVA-MICGGKGGGKPDMAMAGGTEPDKLKQALAGVA 866

Query: 894 SFL 896
           + +
Sbjct: 867 ALI 869


>gi|85712448|ref|ZP_01043497.1| Alanyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85693726|gb|EAQ31675.1| Alanyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 867

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/902 (41%), Positives = 546/902 (60%), Gaps = 48/902 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  F++FF++ GH+ +PS+S+IP NDPTL+FTN+GMVPFK++F G +K  Y   T
Sbjct: 4   TSAEIREKFIQFFEQRGHQRVPSASMIPANDPTLLFTNAGMVPFKDVFLGTDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+E  L  
Sbjct: 64  SAQRCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKTEAIEFAWHFLTQELQLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L++TV++ED+EA+ +W K  G+  D+I RI   DNFWSM +TGPCGPCSE+F+D G  
Sbjct: 124 EKLWVTVFEEDDEAYDIWAKHIGVPEDRISRIGVKDNFWSMGDTGPCGPCSEVFYDHGPE 183

Query: 183 IPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GG P    E+G+RYIEIWNLVFMQ+ +Q       LP  SIDTGMGLER+A +LQ   
Sbjct: 184 VWGGPPGTPEEDGDRYIEIWNLVFMQYNRQADGTMEPLPNPSIDTGMGLERIAAILQGVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+ID F+ LI+ S  + G+     +  + RVI DH+RS SFLIADG++P+NEGRGYVL
Sbjct: 244 SNYEIDTFQALIKRSADIIGVSD--LSSKSLRVIADHIRSCSFLIADGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  LLG  +     L+  L   MG AYPEL++ + +IE+ L+ E+++F KT
Sbjct: 302 RRIIRRAVRHGNLLGAKQTFFYQLVDELVKLMGEAYPELVEKRHIIEDALKREEQQFEKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL +L+  +  L     LNG+V FKLYDT+G P+D+  DI        ID   FN A
Sbjct: 362 LERGLAILNDEIKQLS-GNTLNGEVVFKLYDTYGFPMDLTADIARE-NELVIDEEGFNAA 419

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++ QR RA+  S           + +  +    + F GY                     
Sbjct: 420 MQAQRERAQKASQFG------VDYNAQVKATTKSVFDGYTE------------------- 454

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
               +   + V  +  +G  VE   +GQ+  VV   TPFYAE+GGQ+GDTG  + +  R 
Sbjct: 455 ----DKAQTTVVELFHEGTAVESLEAGQQGVVVLANTPFYAESGGQVGDTGVLLANQGRF 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++TD Q   +    HH   +   ++   ++   ID + R  +  NHSATHLLH AL  IL
Sbjct: 511 EVTDTQYIGK-AIAHHGQADC-TIKLGDAVTAEIDSERRANIRRNHSATHLLHAALRDIL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV Q GS +  + +RFD  H +P+T A++  +E  VN+ I +N+ + T++MN ++A  
Sbjct: 569 GDHVQQKGSLVEAERMRFDFAHFEPLTKAQITELERVVNEQIRKNVRLTTQVMNIDEAKK 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA AL G KY+D VRVV +     G  S  LCGGTHV++TG+I L  I  E+ I +G+R
Sbjct: 629 AGAMALFGEKYDDDVRVVRM-----GEFSMELCGGTHVAATGDIGLFRITHETGIASGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R+E +TG  A   +  Q   L  L +  K  +  ++G+V+++  +YR+L+    + + +L
Sbjct: 684 RLEVVTGAAAFEFMANQQAILNQLTADFKTDETGLLGKVDQLQSKYRELERKAEQLQQKL 743

Query: 782 NVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             +          ++     +   + + ++K L+ ++D L+ ++ SG+++L   ++  K 
Sbjct: 744 AQQAGGGLVQQAVEMNGHKVIVAQLEDTEAKALRGIVDDLKNQLGSGVVLLA-TAQGSKV 802

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           S++  VT+DL     A DL   +A V+ GG GGGRP MAQ+GG N     +A+A   S+L
Sbjct: 803 SLIAGVTKDLTSIVKAGDLVNQAANVV-GGKGGGRPDMAQAGGSNPEHLSEALATATSWL 861

Query: 897 KK 898
           ++
Sbjct: 862 EQ 863


>gi|83719349|ref|YP_443176.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|167620352|ref|ZP_02388983.1| alanyl-tRNA synthetase [Burkholderia thailandensis Bt4]
 gi|257139409|ref|ZP_05587671.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|123536505|sp|Q2SV73|SYA_BURTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83653174|gb|ABC37237.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 874

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 537/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+           + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G+L+   ++   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDAVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 AALAGVKGWVEE 872


>gi|322831421|ref|YP_004211448.1| alanyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321166622|gb|ADW72321.1| alanyl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 875

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/911 (42%), Positives = 549/911 (60%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH ++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHNIVSSSSLVPTNDPTLLFTNAGMNQFKDVFLGLDKRDYNRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFEIWEKEVGVPKERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  V+Q   +NYDIDLF+ LI A  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVMQHVNSNYDIDLFQKLIAAVAEVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAQDTFFYKLVAPLIEVMGPAATELKEQQAMVEQLL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G++AF+LYDT G PLD+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAALK-GDTLDGEIAFRLYDTFGFPLDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A++ QR RAR       S      + S+    G TQF GY+ L+       
Sbjct: 420 -VDEAGFEKAMDVQRRRARE------SSGFSADYNSMVRVDGVTQFSGYEHLQRH----- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+   G+ V +  +G    VV D TPFY E+GGQ+GD 
Sbjct: 468 ------------------SKVVALFVDGQPVNDIQAGVNAIVVLDDTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          ++D QK  +    H   +  G L    S+   +D   R ++ +NHSATH
Sbjct: 510 GILKTTTGVFSVSDTQKYGK-AIGHQGALSAGKLSIGDSVEAEVDVARRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +   E++ +ED VN  I +NLP+ T
Sbjct: 569 LLHAALRQVLGKHVAQKGSLVNDNYLRFDFSHFEAMKPEEIRQVEDLVNAQIRRNLPIQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ ++A   GA AL G KY D VRV+S+     G  S+ LCGGTH S TG+I L  I 
Sbjct: 629 TIMDLDEAKEKGAMALFGEKYEDSVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIE ITG+ A + L  Q + L+ +A  +K    ++  ++  + E  R L+
Sbjct: 684 SESGTAAGVRRIEGITGENAINALHQQSDLLQDVAHLVKGDVNSITDKIRSLIERSRTLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +       ++  V  +      V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQVKGQQAAQESASLSSQAKEVKGVKLLVRQFDNVEPKMLRTMVDDLKNQLGSVIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  I+ + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATIA-DDKVSLIAGVTKDLTDRVKAGELIASVAQQV-GGKGGGRPDMAQAGGSDVQALP 861

Query: 887 QAIAGVASFLK 897
            A+A V ++++
Sbjct: 862 AALATVEAWVE 872


>gi|85708967|ref|ZP_01040033.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. NAP1]
 gi|85690501|gb|EAQ30504.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. NAP1]
          Length = 887

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/910 (48%), Positives = 593/910 (65%), Gaps = 38/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL+FF    H  + S+ L+P NDPTLMF N+GMVPFKN+FTG E P    
Sbjct: 1   MTSTNDIRRSFLDFFASEDHVEVQSAPLVPHNDPTLMFVNAGMVPFKNVFTGLETPPGPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAILNAWTLLTKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LW+KISGL  ++IIRI T DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 APEKLTATVYHTDDEAFDLWRKISGLPEERIIRIATADNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E IPGG P    E+G+R+IEIWNLVFMQF+Q     R  LP  SIDTGMGLER+A V+Q 
Sbjct: 181 EHIPGGPPGSPDEDGDRFIEIWNLVFMQFDQAADGTRRDLPSPSIDTGMGLERIAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI ASE +T +   G N  +HRVI DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 241 VHDNYDTDTFKALIAASENLTEVPASGENTASHRVIADHLRSTSFLMADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG +EPLM  L+PAL +EMG AYP L + + LIEE L  E+ +F 
Sbjct: 301 VLRRIMRRAMRHAHLLGASEPLMHRLVPALVSEMGQAYPGLQRGQSLIEEVLLREETQFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD+GL LLD     + +   L+G+ AFKLYDT+G P D+ +D L ARG   +D   F+
Sbjct: 361 KTLDKGLKLLDEATGSMSEGGELDGETAFKLYDTYGFPYDLTEDALRARG-ISVDRGGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+  Q++ ARA   G G   +++IWF + E+ GAT+F GY    G              
Sbjct: 420 EAMARQKAAARAAWKGSGEAASDEIWFDIAEREGATEFTGYSTTSG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V+ G  V+ A +G +V V+ +QTPFY E+GGQ GDTG       
Sbjct: 466 ---------EGTVVALVKDGAEVDSASAGDEVVVLTNQTPFYGESGGQTGDTGTISTPTG 516

Query: 540 R-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +TD  K    +  H A +  G ++   ++ L +D + R Q+  NHSATHL+H AL 
Sbjct: 517 LAADVTDTSKPLGRLHAHQARITAGKVKVGDNVQLDVDAERRTQIRANHSATHLVHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS ++ + LRFD +H KP+++ ++ +IED VN  I  N PV TR+M+ +D
Sbjct: 577 NQLGDHVTQKGSLVSQERLRFDFSHPKPLSAEDIVAIEDEVNAEILANEPVGTRLMSPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+ +GA AL G KY D VRV+S+      G  +S  LCGGTHVS+TG+I L  IVSE ++
Sbjct: 637 AVEAGALALFGEKYGDEVRVLSMGRSGGSGRNYSVELCGGTHVSATGDIGLFRIVSEGAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA+TG  AR+ L+ ++E LKS+A  ++ +   V  RV  + +E ++L+   A+
Sbjct: 697 SSGVRRIEALTGDAARNWLVAREEALKSVAGAIRATPEEVPARVAALLDERKRLEKELAE 756

Query: 777 RKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            K  L +               ++A V F   ++  ++ KEL+ ++D  + ++ +G+  +
Sbjct: 757 AKKALALGGGGSGGGPAASADEQVAGVAFSGQVLEGLNPKELRPLLDEAKARLGTGVAAI 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           V +  + KAS+   VT+DL D+F+AVDL R   + LGG GGGGRP MAQ GGP+G+KA +
Sbjct: 817 VAV-NDGKASIAAAVTDDLTDKFSAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGSKAAE 875

Query: 888 AIAGVASFLK 897
           AIA V S L+
Sbjct: 876 AIASVKSVLE 885


>gi|237729651|ref|ZP_04560132.1| alanyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226908257|gb|EEH94175.1| alanyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 875

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 564/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI++  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRSLIESVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVV 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + ++++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVDVMGSAGEELKRQQVMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++    GA++F GY+ L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDGASEFKGYEHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ   VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFAFAVSDTQKYG-QAIGHIGKLSAGSLKIGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H++ +  AE++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKLLRFDFSHTEAMKPAEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH S TG+I L  IV
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A   +  + ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIQTVHAESDRLSDVAQLLKGDSQNIGDKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   +++V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDINGVKLLVSELADVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|16126768|ref|NP_421332.1| alanyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|221235548|ref|YP_002517985.1| alanyl-tRNA synthetase [Caulobacter crescentus NA1000]
 gi|20532261|sp|Q9A5C1|SYA_CAUCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13424088|gb|AAK24500.1| alanyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|220964721|gb|ACL96077.1| alanyl-tRNA synthetase [Caulobacter crescentus NA1000]
          Length = 880

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/904 (49%), Positives = 590/904 (65%), Gaps = 34/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F K  H + PS+ L+P NDPTL+F N+GMVPFKN+FTG E P +  
Sbjct: 1   MPSLNEIRSTFLDYFGKADHAVTPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPAHPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT EF L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAILHAWTLLTAEFKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  LWKKI+GL  D+IIRI T+DNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYHTDDEAADLWKKIAGLGDDRIIRIPTSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG P    E+G+R+IEIWNLVFMQFEQ    ER  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PHIAGGPPGSPDEDGDRFIEIWNLVFMQFEQLAGGERISLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLFK LI AS ++TG+K EG    +HRVI DHLRSSSFL+ADG+ P+NEGRGY
Sbjct: 241 QHDNYDIDLFKALIAASVELTGVKAEGAQAPSHRVIADHLRSSSFLLADGVSPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG +EPLM  L P L  EMG AYPEL +A+ LI ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGASEPLMHRLAPTLVREMGQAYPELRRAEALIVETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ LLD   ++L    +L+G+ AFKLYDT+G PLD+ QD + A+GL  +D  +F+
Sbjct: 361 TTLGRGMGLLDEATANLAAGGVLDGETAFKLYDTYGFPLDLTQDAVRAKGLT-VDTDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+++QR  ARA+  G G       WFS+KEK GAT F+GY+                  
Sbjct: 420 AAMQKQREMARANWAGSGQQGAAAAWFSIKEKAGATDFVGYETTE--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    + +VKAIV  G  VE A +GQ VEV+ D+T FYAE+GGQ GDTG     G 
Sbjct: 465 --------TTGVVKAIVVDGAEVESASAGQTVEVLLDRTSFYAESGGQAGDTGVIEAHGR 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QK+A  + VH   +   + +    +V ++D   R     NHSA HL+H AL  
Sbjct: 517 ESRVLDTQKQAGELHVHRVELASDL-KVGDQVVASVDADRRNTTRSNHSAAHLVHAALHH 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H  P+T+ EL  IE  VN++I QN+P  T+ M  ++A
Sbjct: 576 VLGPHVAQKGQMVDGERMRFDFSHGGPLTAEELDRIEAEVNEVIRQNVPAETKEMAPQEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++     ++   +S  LCGGTHV+ TG+I L  IVSE  +
Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGKSLADEAKAYSVELCGGTHVARTGDIALFKIVSEQGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ AR  L+ Q    K+LA   K     V  RV+ +  + ++L+   A+
Sbjct: 696 AAGVRRIEALTGEAARRFLLDQAGVAKALADQFKTPVAEVATRVDALIADRKRLEKELAE 755

Query: 777 RKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            K QL +           +     ++ ++  V  KEL+ V +  +K++ SG++ LVG S 
Sbjct: 756 AKKQLALGGGGAASGPEDVNGTALIARVLDGVGGKELRGVAEEFKKQLASGVVALVGTS- 814

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA+V + VT DL  +F+A DLA+ +   +GG G GG+   AQ G P+ +KA++ +A V
Sbjct: 815 DGKAAVTVAVTADLTGKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDDSKAEEGLAAV 874

Query: 893 ASFL 896
            + L
Sbjct: 875 KALL 878


>gi|319404395|emb|CBI77998.1| Alanyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 887

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/910 (52%), Positives = 637/910 (70%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+ FL++F++NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y+ 
Sbjct: 1   MNSVNSIRSAFLDYFRRNGHEILSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQYPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            Q +L +TVY  D  A +LW+KISGL  +KIIRI TNDNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 SQDKLLVTVYHTDNIAAELWRKISGLPNEKIIRIATNDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS +E+G+R+IEIWNLVFMQ+EQ NK+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIFGGPPGSANEDGDRFIEIWNLVFMQYEQVNKEERTELPCPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF  LI AS+++TG+K  G  + +HRVI DHLRSS+FLI+DG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFCKLIHASQEITGIKATGEFVASHRVIADHLRSSAFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  E LM  LLP L  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMKKLLPVLIREMGQAYPELVRAESLISEILKLEETRFH 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+ V   L + + L+G+VAFKLYDT+G PLD+ QD L  RG   +DI +F 
Sbjct: 361 KTLERGLSLLNEVSIDLKEGDHLDGEVAFKLYDTYGFPLDLTQDALRCRG-ISVDIDAFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++  RA+  G G+  TE IWFS+++K GAT+F+GY+                  
Sbjct: 420 KAMELQKAENRANWSGSGASITETIWFSIRDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ A+V  GEIV+   SGQ   +V +QTPFYAE+GGQ+GD+G   G+  
Sbjct: 462 -----TEKAEGVITALVCDGEIVDHISSGQDAMLVVNQTPFYAESGGQVGDSGVISGESF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q++ +G+F+H   V+ G  +    + L++D + RR++  NHSATHLLH AL  
Sbjct: 517 VFEVHDTQRRGDGVFIHIGEVKSGQAQISDCVELSVDSERRRKIRANHSATHLLHEALRC 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG H++Q GS ++P  LRFD +H KPI+S ELK +ED  NDI+ QN  V TR+M  +DA
Sbjct: 577 ILGPHIAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSKVTTRLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+             S  LCGGTHV  TG+I L++IV ES
Sbjct: 637 ILGGAMALFGEKYGDEVRVVSMGERCEPTELTRHWSIELCGGTHVQRTGDIGLIHIVGES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ +G+RRIEA+TG  AR +L  QD+++  +ASFLK S  N+  R+  + ++ RK +   
Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEMASFLKTSPANLEERIRNLLDDRRKFEKEL 756

Query: 775 A--KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              ++ + LN   L   K     I  ++FM  ++  +  ++LK+++D+ +K+I+SG++  
Sbjct: 757 NNTRKNVALNGGALQGRKEDITIINGISFMGGVLRNIAVRDLKALVDSGKKQIKSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + +S++ K S ++ VT+DL++  NAVDL R+ + VLGG GGGGRP MAQ+GG  G+KAD+
Sbjct: 817 ISVSEDGKGSAVVGVTDDLINMLNAVDLVRVVSTVLGGQGGGGRPDMAQAGGSKGDKADE 876

Query: 888 AIAGVASFLK 897
           AI  + +FLK
Sbjct: 877 AITALKAFLK 886


>gi|205830051|sp|B2IHX3|SYA_BEII9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 898

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/915 (51%), Positives = 618/915 (67%), Gaps = 43/915 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR  FL+FF+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MNGVNEIRAAFLDFFRKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNLFTGVEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+T+ FDL
Sbjct: 61  ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITEVFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY +D+EA+ LWKKI+G    KIIRI T+DNFW+M +TGPCGPCSEIF+DQG
Sbjct: 121 PKDRLLVTVYHDDDEAYDLWKKIAGFPDSKIIRIATSDNFWAMGDTGPCGPCSEIFYDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ+   +R  LPK SIDTGMGLER+A +LQ 
Sbjct: 181 EKLFGGPPGSADEDGDRFLEFWNLVFMQFEQRGPGDRIALPKPSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NYDIDL + LI A  Q TG+  +G    +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VTSNYDIDLMRALILAVAQATGVDPDGPMRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  L+PAL  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLLWRLVPALTREMGQAYPELLRAEALIVETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL +L+    HL +  +L+G+VAFKLYDT+G PLD+ QD L A+ L G+D+  F 
Sbjct: 361 ATLARGLTILEDETRHLSEGGVLSGEVAFKLYDTYGFPLDLTQDALRAKSL-GVDMEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+  QR+ AR    G G   T+  WF+L+E+ GAT F+GYD                  
Sbjct: 420 KAMARQRAEARKAWSGSGEAATDTHWFALREQLGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    ++++AI+Q G+ V    +GQ   +V +QTPFY E+GGQ+GDTG  I  G+
Sbjct: 462 -----TEKAEALIQAILQDGKEVLRLEAGQSGAIVLNQTPFYGESGGQVGDTGLIIAPGM 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ +  KK   +F+H  IVE G +   + +   +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFKVENTHKKLGDLFIHEGIVEEGAVVPGLEVRTLVDHSRRTAVRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD +H KP+T  E   IED  N +I +N PV T++M+ EDA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFSHPKPVTPEEWTQIEDIANSVILENAPVTTKLMSIEDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----------VHSSALCGGTHVSSTGEIMLL 708
           + SGA AL G KY D VRVVS+ Y++               S  LCGGTHV+ TG+I LL
Sbjct: 637 MGSGARALFGEKYGDEVRVVSMGYDEDKADDSTDGRIAPPFSVELCGGTHVARTGDIGLL 696

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SES++ AG+RRIEA TG  AR HL  Q   L SLA+ LK  +     R+  + EE R
Sbjct: 697 TIISESAVAAGVRRIEAKTGSSARHHLNTQASLLHSLAAQLKSPEDEASKRLSALIEERR 756

Query: 769 KLQLIHAKRKLQLNVEDLSCH-------KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           KL    ++ + +L +   S +       +I  + F    ++ V+ K+LKS+ D  ++ I 
Sbjct: 757 KLDRELSEARKKLAMGGGSSNGADSPLREIGGIKFFRRAVTGVEMKDLKSLADEAKQTIG 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SGI+ +VG+  + KASV++ VT+DL+DRF+AV L RL+A  LGG GGGGR  +AQ+GGP+
Sbjct: 817 SGIVAIVGVGSDNKASVVVGVTDDLIDRFDAVALVRLAAGKLGGKGGGGRKDLAQAGGPD 876

Query: 882 GNKADQAIAGVASFL 896
           G  A+ A+  +   L
Sbjct: 877 GEAAEAALTAIEESL 891


>gi|182679359|ref|YP_001833505.1| alanyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635242|gb|ACB96016.1| alanyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 901

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/915 (51%), Positives = 618/915 (67%), Gaps = 43/915 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR  FL+FF+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 4   MNGVNEIRAAFLDFFRKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNLFTGVEKRPYTR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+T+ FDL
Sbjct: 64  ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITEVFDL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY +D+EA+ LWKKI+G    KIIRI T+DNFW+M +TGPCGPCSEIF+DQG
Sbjct: 124 PKDRLLVTVYHDDDEAYDLWKKIAGFPDSKIIRIATSDNFWAMGDTGPCGPCSEIFYDQG 183

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ+   +R  LPK SIDTGMGLER+A +LQ 
Sbjct: 184 EKLFGGPPGSADEDGDRFLEFWNLVFMQFEQRGPGDRIALPKPSIDTGMGLERIAALLQG 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NYDIDL + LI A  Q TG+  +G    +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 244 VTSNYDIDLMRALILAVAQATGVDPDGPMRASHRVIADHLRASSFLIADGVLPSNEGRGY 303

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  L+PAL  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 304 VLRRIMRRAMRHAQLLGAQEPLLWRLVPALTREMGQAYPELLRAEALIVETLRLEETRFR 363

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL +L+    HL +  +L+G+VAFKLYDT+G PLD+ QD L A+ L G+D+  F 
Sbjct: 364 ATLARGLTILEDETRHLSEGGVLSGEVAFKLYDTYGFPLDLTQDALRAKSL-GVDMEGFE 422

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+  QR+ AR    G G   T+  WF+L+E+ GAT F+GYD                  
Sbjct: 423 KAMARQRAEARKAWSGSGEAATDTHWFALREQLGATDFLGYD------------------ 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    ++++AI+Q G+ V    +GQ   +V +QTPFY E+GGQ+GDTG  I  G+
Sbjct: 465 -----TEKAEALIQAILQDGKEVLRLEAGQSGAIVLNQTPFYGESGGQVGDTGLIIAPGM 519

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ +  KK   +F+H  IVE G +   + +   +D+  R  +  NHSATHLLH AL  
Sbjct: 520 RFKVENTHKKLGDLFIHEGIVEEGAVVPGLEVRTLVDHSRRTAVRANHSATHLLHEALRQ 579

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD +H KP+T  E   IED  N +I +N PV T++M+ EDA
Sbjct: 580 VLGDHIAQKGSLVAPDRLRFDFSHPKPVTPEEWTQIEDIANSVILENAPVTTKLMSIEDA 639

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----------VHSSALCGGTHVSSTGEIMLL 708
           + SGA AL G KY D VRVVS+ Y++               S  LCGGTHV+ TG+I LL
Sbjct: 640 MGSGARALFGEKYGDEVRVVSMGYDEDKADDSTDGRIAPPFSVELCGGTHVARTGDIGLL 699

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SES++ AG+RRIEA TG  AR HL  Q   L SLA+ LK  +     R+  + EE R
Sbjct: 700 TIISESAVAAGVRRIEAKTGSSARHHLNTQASLLHSLAAQLKSPEDEASKRLSALIEERR 759

Query: 769 KLQLIHAKRKLQLNVEDLSCH-------KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           KL    ++ + +L +   S +       +I  + F    ++ V+ K+LKS+ D  ++ I 
Sbjct: 760 KLDRELSEARKKLAMGGGSSNGADSPLREIGGIKFFRRAVTGVEMKDLKSLADEAKQTIG 819

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SGI+ +VG+  + KASV++ VT+DL+DRF+AV L RL+A  LGG GGGGR  +AQ+GGP+
Sbjct: 820 SGIVAIVGVGSDNKASVVVGVTDDLIDRFDAVALVRLAAGKLGGKGGGGRKDLAQAGGPD 879

Query: 882 GNKADQAIAGVASFL 896
           G  A+ A+  +   L
Sbjct: 880 GEAAEAALTAIEESL 894


>gi|163868621|ref|YP_001609830.1| alanyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
 gi|205829989|sp|A9IVY8|SYA_BART1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161018277|emb|CAK01835.1| Alanyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
          Length = 888

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/911 (52%), Positives = 643/911 (70%), Gaps = 37/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+TFL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+ +Y+ 
Sbjct: 1   MNSVNNIRSTFLDYFHRNGHQVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQHLYKK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+WDLLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFLSWDLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ A +LW+KISGL  +KI+RI T DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYQSDDVAAELWRKISGLPDEKIVRIATADNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ +K+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIWGGPPGSMEEDGDRFIEIWNLVFMQYEQLSKEERVDLPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI ASE++TG+K  G+ + +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFRVLIGASEKITGIKATGDFVASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  LLPAL  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMWQLLPALICEMGQAYPELVRAESLISETLKLEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + + LNG+VAFKLYDT+G PLD+ QD+L  RG   +D+ +F+
Sbjct: 361 KTLERGLGLLNEESAKLKEGDHLNGEVAFKLYDTYGFPLDLTQDVLRRRG-ISVDVDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q+  ARAH  G G   TE IWFS++++ G T+F+GY+                  
Sbjct: 420 KAMERQKEEARAHWSGSGEAVTETIWFSVRDQVGVTEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+V  G+IV+E  SGQK  +V +QTPFY E+GGQ+GD+G   G+  
Sbjct: 462 -----TEKAEGIITALVCDGKIVDEVSSGQKAILVLNQTPFYGESGGQIGDSGIISGEDF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKKA+G+F+H   V+ G  +    + LT+D   R+++  NHSATHLLH AL  
Sbjct: 517 IFEVHDTQKKADGVFIHLGKVKSGHAKISDCVQLTVDVVRRKKIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS ++P+ LRFD +H K ++  ELK IED  N+I+ QN  V TR+M  ++A
Sbjct: 577 VLGSHVTQKGSLVSPERLRFDFSHPKSVSLEELKKIEDLANEIVLQNNKVTTRLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY D VRVVS+             S  LCGGTHV  TG+I L++IVSES
Sbjct: 637 ISEGAMALFGEKYEDEVRVVSMGAPLEQGGLKKHWSIELCGGTHVERTGDIGLIHIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG  AR +L  QD +++ ++  LK S  ++  RV  + +E RK +   
Sbjct: 697 SVSAGVRRIEALTGAAARLYLCRQDVRIREISDLLKTSSSDLEERVRSLLDERRKFEKEL 756

Query: 775 AKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + ++ +              I  ++FM HI+  +  ++LK+++DA +K+I SG++  
Sbjct: 757 NDVRKKMVLNGKITESGQGDITIINGLSFMRHIVKNILPRDLKALVDAGKKQIGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + IS++ K S ++ VT+DL D+ NAVDL R+ + VLGG GGGGR  MAQ+GGP+GNKA++
Sbjct: 817 ITISEDGKGSAVVGVTDDLTDKLNAVDLVRILSNVLGGQGGGGRSDMAQAGGPDGNKANE 876

Query: 888 AIAGVASFLKK 898
           A A +  FL+K
Sbjct: 877 AFAALKDFLEK 887


>gi|260599084|ref|YP_003211655.1| alanyl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260218261|emb|CBA33198.1| Alanyl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 875

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/910 (43%), Positives = 563/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGAQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A   VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFQKLIKAVANVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVDVMGSAGDELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++    GA++F GYD          
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDQTE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ V A+   G+ VE+  +GQ+  VV D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LTARVTALFIDGKSVEQVAAGQQAVVVLDETPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+G    + D QK       H   +  G+L+    +   +D   R ++ +NHSATH
Sbjct: 510 GELKGNGFTFTVNDTQKYG-QAIGHIGELTSGVLKVGEGVKAEVDQARRERIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +   GLRFD +H + +   E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKGLRFDFSHFEAMKPEEIRKVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY DRVRV+S+     G  S+ LCGG H S TG+I L  IV
Sbjct: 629 NVMDLEAAKAKGAMALFGEKYEDRVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A S +  Q+++L  L+  LK     +  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALSLVHAQNDRLNELSHLLKSDSQTLNDKVRAMVERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQQAAQESANLSSKAIDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSSVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ +R  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTERVKAGELVGMIAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+  V S++
Sbjct: 862 AALGSVESWV 871


>gi|163749985|ref|ZP_02157229.1| alanyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161330259|gb|EDQ01240.1| alanyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 874

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/909 (42%), Positives = 554/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++RT FLE+F+KNGH+++ SSSL+P NDP+L+FTN+GM  FK +F G++K  Y   T
Sbjct: 4   TTAALRTAFLEYFRKNGHQVVDSSSLVPVNDPSLLFTNAGMNQFKGVFLGEDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  + +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAITFAWNFLTQELKIPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D EA+ +W K  G+SAD +IRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDNEAYDIWTKEIGISADNLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG P    E+G+R+IEIWN+VFMQ+ +Q+  E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSNGEMLALPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++  +        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILAVTD--LENKSLRVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+     L+P L   MG A   L++ + ++ ++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDSFFYKLVPTLIEVMGEAAKGLVETQAIVVKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LDG L+ L    +L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDGALNALS-GNVLDGETAFKLYDTYGFPVDLTADVCRERDIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+  QR RA+A       G     +    +    T+F GY  L           
Sbjct: 420 EAGFELAMSAQRKRAQAA------GQFGTDYNDSLKIDEETEFSGYIDLVS--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + AI +QG+ V E  +G++  VV D TPFY E+GGQ GD+G  
Sbjct: 465 --------------NAKITAIYKQGKSVTEINAGEEALVVLDTTPFYGESGGQCGDSGTL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +GI   + D QK  +    H   ++ G L    SL  ++D   R++  +NHS THLLH
Sbjct: 511 STNGIEFIVKDTQKYGQ-AVGHLGALKTGSLSLGQSLEASVDKSLRQRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + +   EL+++ED VN  I  N  +  ++M
Sbjct: 570 AALRQLLGTHVSQKGSLVDPERLRFDFSHFEGVKPEELQAVEDLVNSQIRHNHELTAQVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             + A   GA AL G KY D VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 TIDAAKEQGAMALFGEKYADEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q  +L   A  LK   G+VV +++   E  ++L+   
Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVTSQKVELDQAAKLLKADSGSVVIKLKAQLERTKQLEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +              +I  V  +   +  V+   L+ + D L++K+ SGI++L G
Sbjct: 745 SQLKDKFAAATSADLAGEAQEINGVKVLIKKLDGVEPSALRGLQDELKQKLGSGIVVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ + K ++++ VT+DL  +  A +L    A ++ GG GGGRP MAQ+GG      D A+
Sbjct: 804 ITGDAKVNLIVGVTKDLTSKVKAGELVANIAALV-GGKGGGRPDMAQAGGCQPENLDAAL 862

Query: 890 AGVASFLKK 898
             V+S+LK+
Sbjct: 863 NKVSSWLKE 871


>gi|78221425|ref|YP_383172.1| alanyl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|123572914|sp|Q39Z77|SYA_GEOMG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78192680|gb|ABB30447.1| alanyl-tRNA synthetase [Geobacter metallireducens GS-15]
          Length = 876

 Score =  912 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/906 (41%), Positives = 542/906 (59%), Gaps = 42/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF+  GH ++PSS LIP NDPTL+F N+GM  FK+ F G E   Y   
Sbjct: 1   MTGNELRARFLKFFEDRGHTVVPSSLLIPHNDPTLLFANAGMNQFKDCFLGMEDRGYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK+  LD
Sbjct: 61  TSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA  +W    G+  ++I R    DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 KDRLYVTVYTDDDEAADIWHHQEGVPRERIFRFGEKDNFWSMGDTGPCGPCSEIFWDNGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P      + +RY+EIWN VFMQF +        LPK S+DTGMGLER+ TV+Q 
Sbjct: 181 EVGCGSPDCTVGCDCDRYMEIWNNVFMQFNRSADGTMTPLPKPSVDTGMGLERICTVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NYD DL + +I+  E+++G +Y     + V+ RVI DH R+++FLI DG+LP+NEGR
Sbjct: 241 VKSNYDTDLLQGVIRHVERLSGKRYRENEKDDVSMRVIADHARATTFLICDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG+ EP++   + A+   MG +YPEL++ +  I++ +R+E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGFAEPVLYRTVDAVNEMMGGSYPELLEREEYIKKVIRAEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+  ++ L      ++ G+  F+LYDT G P D+  DI+ A G   ID 
Sbjct: 361 FAETLDRGLAILNDAVAQLKGEGKTVIPGETLFRLYDTFGFPTDLTADIVRAEGFT-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +  QR +AR H  G G      +   L  +   + F+GYD              
Sbjct: 420 PGFEACMGRQREQAREHWKGSGEEGIAAVHKELHNRGVRSVFVGYDE------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + + +I++ G  V EA +G+ VE++ D+TPFY E+GGQ GDTG   
Sbjct: 467 ----------KCSYAAIGSILRGGSEVAEAKAGEDVEIITDRTPFYGESGGQAGDTGTIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +++T   +    + VH   V  G ++T  +  L +   +R   + NH+ATHLL  
Sbjct: 517 TGSAHVRVTGTIRPYPDLIVHRGTVVEGTIKTGEACDLKVASVDRDATARNHTATHLLQT 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD LRFD TH   +T  E++ +E+ VN  I +N  V  R M 
Sbjct: 577 ALRRVLGEHVKQAGSLVAPDRLRFDFTHFAAMTPEEIRRVEEIVNTFIMENDTVHAREMA 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A+ SGA AL G KY DRVRVV V     G  S+ LCGGTHV + G+I    I+SE+ 
Sbjct: 637 VEEAMESGATALFGEKYGDRVRVVKV-----GEVSAELCGGTHVRAAGDIGSFKILSEAG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG  A  H+   +++ + +A+ +K   G+ + R++++    R++Q    
Sbjct: 692 IAAGVRRIEALTGMGALRHIQELEDEKRQIAALMKAEGGDNIDRLQKLLARQREMQREIE 751

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + QLN            ++  V  ++  +   D K+L+ + D L+ ++ SG++ L G 
Sbjct: 752 TLQGQLNAAKSGDLLADVREVNGVKVLATKVEVDDPKKLRELADTLKDRLGSGVVAL-GC 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            K+ +A++L+ VT+DL  R  A D+ R  A V+ GG GGG+P +AQ+GG   +   +A+ 
Sbjct: 811 EKDGRANLLVAVTKDLAGRIRAGDIIRQLAPVI-GGSGGGKPELAQAGGSQPDMLAEALG 869

Query: 891 GVASFL 896
            V   +
Sbjct: 870 KVYGLI 875


>gi|152988514|ref|YP_001349956.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|205830183|sp|A6VA71|SYA_PSEA7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150963672|gb|ABR85697.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
          Length = 874

 Score =  912 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/912 (43%), Positives = 548/912 (60%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFFDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLAELQ-GSVIPGNVVFKLYDTYGFPVDLTNDIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + +E QR RARA S           + SL +  G T+F+GY  + G+     
Sbjct: 418 -IDEDGFEREMEAQRERARASSAFGM------DYNSLVKVDGETRFLGYQGVSGA----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD+
Sbjct: 466 ------------------GQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+R  + D  K      +HH +V  G L    ++   +D   R+  ++NHSATH
Sbjct: 508 GYLEAAGVRFDVRDTTKAGG-AHLHHGVVAEGGLSVGAAVKAEVDASVRQATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +LK++ED VN  I +N  V T
Sbjct: 567 LLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKALEDIVNAEIRRNTEVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I 
Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A ++L G +E+LK  A  +K S+ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAAGLVKGSRDNLLDKLGALLERNRSLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +           +   I     ++  +  +D K L +++D L+ K+   +I+
Sbjct: 743 KELEQLKAKAASAAGDDLSAAAVDIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   + K  ++  VT+DL  +  A +L + +A  +GG G GGRP MAQ GG +  K D
Sbjct: 803 LGG-ELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKG-GGRPDMAQGGGTDAAKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A    F+++
Sbjct: 861 EALALAQRFVEQ 872


>gi|240850806|ref|YP_002972206.1| alanyl-tRNA synthetase [Bartonella grahamii as4aup]
 gi|240267929|gb|ACS51517.1| alanyl-tRNA synthetase [Bartonella grahamii as4aup]
          Length = 890

 Score =  912 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/911 (52%), Positives = 641/911 (70%), Gaps = 37/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+ FL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+P Y+ 
Sbjct: 1   MNSVNNIRSIFLDYFHRNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQPPYKQ 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+W+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAILLSWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ A +LW++ISGL  +KI+RI T DNFWSM ETGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYQSDDVAAELWRRISGLPDEKIVRIATADNFWSMGETGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ ++++R  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIWGGPPGSMEEDGDRFIEIWNLVFMQYEQISQEKRVDLPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI ASE++TG++ +G+ I +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFRALIAASEEITGIEAKGDFIASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPL+  LLPAL  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLLWRLLPALNREMGQAYPELVRAESLISETLRLEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + + LNG+VAFKLYDT+G PLD+ QD+L  RG   +D+ +F+
Sbjct: 361 KTLERGLGLLNEASTDLKEGDHLNGEVAFKLYDTYGFPLDLTQDVLRRRG-ISVDVDTFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q+  ARA+  G G   TEKIWFS+++K GAT+F+GY+                  
Sbjct: 420 KAMERQKEEARANWSGSGEAVTEKIWFSVRDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+V  G++V+   SGQK  +V +QTPFY E+GGQ+GD+G   G+  
Sbjct: 462 -----TETAKGILTALVCDGKLVDHISSGQKAMLVVNQTPFYGESGGQIGDSGIISGENF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q+K +G+F+H   V+ G       + LT+D   R+++  NHSATHLLH AL  
Sbjct: 517 IFEVHDTQRKGDGVFIHIGEVKSGQASRSDCVELTVDVVRRKKIRGNHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS ++PD LRFD +H K ++  ELK IED  N+II QN  V+TR+M  +DA
Sbjct: 577 VLGSHVTQKGSLVSPDRLRFDFSHPKSVSPEELKKIEDLANEIILQNSRVITRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY D VRVVS+             S  LCGGTHV  TG+I L++I SES
Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGEPLEQRRLKKHWSIELCGGTHVERTGDIGLIHIFSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG+ AR +L  QDE++  +A  LK S   V  RV  + ++ RKL+   
Sbjct: 697 SVSAGVRRIEALTGKEARLYLSRQDERIHEIADLLKTSSAGVEERVRILLDDRRKLEKEL 756

Query: 775 AKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + ++ +      +       I  ++F   ++  +  ++LK+++D+ +K+I SG++  
Sbjct: 757 NDVRKKMMLSGGITERSQGDITIINGLSFTGRVVKNILPRDLKALVDSEKKQIGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + +S++ K S ++ VT+DL D+ NAVDL  + + +LGG GGGGRP MAQ+GGP GNKAD+
Sbjct: 817 ISVSEDGKGSAVVGVTDDLTDKLNAVDLVHILSGMLGGKGGGGRPDMAQAGGPEGNKADE 876

Query: 888 AIAGVASFLKK 898
           A A +  FL+K
Sbjct: 877 AFAALKDFLEK 887


>gi|146281753|ref|YP_001171906.1| alanyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|145569958|gb|ABP79064.1| alanyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 900

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/912 (43%), Positives = 547/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 27  MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 86

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 87  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLK 146

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 147 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 206

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD GE I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 207 TEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 266

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ A+    G         + +V+ DH+RS  FLIADG+ 
Sbjct: 267 RISAVLQHVNSNYEIDLFQSLLNAAADAIGCA--NEGQASLKVVADHIRSCGFLIADGVT 324

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L
Sbjct: 325 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERVL 384

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 385 KNEEEQFAKTLEQGLKILEQDLAGLA-GSVIPGEVVFKLYDTYGFPVDLTGDIARERNLT 443

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +  G T+FIGY    G      
Sbjct: 444 -LDEEGFEREMQAQRERARSASAFGM------DYNSLVKVEGETRFIGYQGTSG------ 490

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S  V A+ +QG +V+   +G++  VV DQTPFYAE+GGQ+GD 
Sbjct: 491 -----------------SGKVLALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGDC 533

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+R  + D  K     F+HH IV+ G L T   +  T+D   R+  ++NHSATH
Sbjct: 534 GYLEAQGLRFDVRDTSKAGG-AFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSATH 592

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HVSQ GS +    LRFD +H + I   +L+++ED VN  I +N  V  
Sbjct: 593 LLHAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVEI 652

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A A GA AL G KY D VRV+++    GG  S  LCGGTHV+ TG+I L  I 
Sbjct: 653 EETDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKIT 708

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R+L+
Sbjct: 709 SEGGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQLE 768

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +           S  ++  +  ++     +D K L +++D L+ K+ S +I+
Sbjct: 769 KELEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVIL 828

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G+ ++ K  ++  VT+DL  R  A DL R +A  +GG G GGRP MAQ GG +  K D
Sbjct: 829 LGGV-QDDKVVLVAGVTQDLTSRLKAGDLMRQAAAAVGGKG-GGRPDMAQGGGTDAAKLD 886

Query: 887 QAIAGVASFLKK 898
           +A+A    F ++
Sbjct: 887 EALALALPFAQQ 898


>gi|91774923|ref|YP_544679.1| alanyl-tRNA synthetase [Methylobacillus flagellatus KT]
 gi|122400203|sp|Q1H3U9|SYA_METFK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91708910|gb|ABE48838.1| alanyl-tRNA synthetase [Methylobacillus flagellatus KT]
          Length = 874

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/912 (41%), Positives = 535/912 (58%), Gaps = 56/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKSNQIRQAFLDYFASKGHQIVSSSSLVPAGDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L 
Sbjct: 61  TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTQVFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L +TVY ED+EA+ +W +  G+ A+++IRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 ADKLTVTVYAEDDEAYDIWTREIGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE IPGG P    E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGEHIPGGPPGSPDEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT       +  + +V+ DH+R+ SFLIADG++P 
Sbjct: 241 AAVLQGVHSNYEIDLFQNLIKAAARVTNTTD--LDSPSLKVLADHIRACSFLIADGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     ++ AL  EMG AYPEL   +  I   LR 
Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGARQAFFHLMVSALVNEMGDAYPELKSGEERITSILRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E++RF +T++ G+ +L+  L  + K  + + NG+ AFKL+DT G PLD+  D+   RG  
Sbjct: 359 EEDRFFETIEHGMAILEAELEEMAKTGNHVFNGETAFKLHDTFGFPLDLTADVCRERG-V 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  Q+ +ARA      +        +L+    AT F GYD L        
Sbjct: 418 SVDSAAFDAAMARQKEQARAAGKFKMAA-------NLEYTGNATTFHGYDTLE------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+ + G  V     G+   VV D TPFYAE+GGQ+GD 
Sbjct: 464 ----------------AQGKVLALYKDGSAVPALNEGELGVVVLDNTPFYAESGGQVGDQ 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G     Q+ D QK    +F HH ++  G LR    +   +D  +R +   +HSATH
Sbjct: 508 GILKGAEGIFQVEDTQKIQASVFGHHGVLSTGTLRVGDEVSARVDLLSRHRTMRHHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS + PD  RFD +H+ P+T+ E++ IED VN  I  N P + 
Sbjct: 568 LMHKALRAVLGSHVQQKGSLVDPDKTRFDFSHNAPVTADEIRRIEDIVNAEILANTPTLA 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A  +GA  L G KY D VRV+ +        S  LCGGTHVS TG+I L  IV
Sbjct: 628 RVMPIDEAQKTGAMMLFGEKYGDEVRVLDIG------TSRELCGGTHVSRTGDIGLFKIV 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + AG+RRIEA  G  A  H+  Q + L   A+  KV    + G++ +  E+ + L+
Sbjct: 682 SESGVAAGVRRIEAAAGDVALRHIQQQQQLLADAAASFKVPAIELAGKISQTLEQIKALE 741

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A+ K +L              I  +  ++  +   D+  L+  MD L+ K+++  I+
Sbjct: 742 KELARLKSKLASSQGDELASQAVNIGGIKVLAATLEGADANTLRETMDKLKDKLKTAAIV 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K SV   VT D   R  A +L    A  + GG GGG+P MA +GG + ++  
Sbjct: 802 LASVNGD-KVSVAAGVTTDTTARIKAGELVNFVAAQV-GGKGGGKPDMAMAGGSDPSQLP 859

Query: 887 QAIAGVASFLKK 898
           +A+A VA ++++
Sbjct: 860 RALASVAGWVEE 871


>gi|156932779|ref|YP_001436696.1| alanyl-tRNA synthetase [Cronobacter sakazakii ATCC BAA-894]
 gi|205830089|sp|A7MJ41|SYA_ENTS8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|156531033|gb|ABU75859.1| hypothetical protein ESA_00569 [Cronobacter sakazakii ATCC BAA-894]
          Length = 875

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 563/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A   VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFQKLIKAVANVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVDVMGVAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++    GA++F GYD          
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHTE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ V A+   G+ VE+  +GQ+  VV D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LTAKVTALFVDGKSVEQVTAGQQAVVVLDETPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+G    + D QK       H   +  G+L+    +   +D+  R ++ +NHSATH
Sbjct: 510 GELKGNGFTFTVNDTQKYG-QAIGHIGELASGVLKVGEGVKAEVDHARRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +   GLRFD +H + +   E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKGLRFDFSHFEAMKPEEIRKVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY DRVRV+S+     G  S+ LCGG H S TG+I L  IV
Sbjct: 629 NVMDLEAAKAKGAMALFGEKYEDRVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A S +  Q+++L  L+  LK     +  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALSLVHAQNDRLNELSHLLKSDSQTLNDKVRAMVERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQQAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSSVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELVGMIAQQV-GGKGGGRPDMAQAGGSDAAALP 861

Query: 887 QAIAGVASFL 896
            A+  V S++
Sbjct: 862 AALGSVESWV 871


>gi|13470354|ref|NP_101920.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|20532259|sp|Q98NQ5|SYA_RHILO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|14021093|dbj|BAB47706.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
          Length = 888

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/902 (51%), Positives = 631/902 (69%), Gaps = 37/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+K GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRKEGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKEF L
Sbjct: 61  ATTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 KKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIATSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHVWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI A+    G   +   + ++RVI DHLRSSSFL+ADG+LP+NEGRGY
Sbjct: 241 VESVFETDLFRHLIDAASSALGRAPDAETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + L+ ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLVTETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      L   ++L+G+ AFKLYDT+G PLD+ QD L  R    +D+  F 
Sbjct: 361 KTLVRGLGLLSEATETLHAGDMLDGETAFKLYDTYGFPLDLTQDALRQRN-ISVDLAGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++ AR H  G G   TE +WFS++E+ GAT+F+GY+                  
Sbjct: 420 NAMEQQKAEARKHWTGSGEAATETVWFSVREQTGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++A+V+ G+ V+ A  G  V VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 462 -----TEQAEGLIQALVKDGKTVDSAGKGDAVAVVVNQTPFYGESGGQMGDTGIISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I+D QKKA+G+FVH   V  G ++T  ++ L +D+  R +L  NHSATHL+H AL  
Sbjct: 517 SIEISDTQKKADGLFVHLGKVASGTVKTGAAVELKVDHARRTRLRANHSATHLIHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFD++H+KPI++ EL+ +E   N+I+ QN PV TR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDISHNKPISAEELEEVERMANEIVVQNSPVTTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV +TG+I L+ +VS+S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR HL  QD +LK+ A+ LK+S  +V  RVE + EE +KL+   
Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKAAAATLKISPADVPARVEALLEERKKLEKDL 756

Query: 775 AKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + + +L +              +A V F+   +S V  K+LK + DA +  + SG+++ 
Sbjct: 757 TEARKKLALGGGAAAGAPSENETVAGVGFLGKAVSGVSPKDLKPLADAGKSSLGSGVVVF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG  ++ KASV++ VT+DL+ RF+AVDL R+++  LGG GGGGRP MAQ+GGP+ +KA+ 
Sbjct: 817 VGADEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKAND 876

Query: 888 AI 889
           AI
Sbjct: 877 AI 878


>gi|205830255|sp|A4VJB3|SYA_PSEU5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/912 (43%), Positives = 547/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLK 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD GE I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ A+    G         + +V+ DH+RS  FLIADG+ 
Sbjct: 241 RISAVLQHVNSNYEIDLFQSLLNAAADAIGCA--NEGQASLKVVADHIRSCGFLIADGVT 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KNEEEQFAKTLEQGLKILEQDLAGLA-GSVIPGEVVFKLYDTYGFPVDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +  G T+FIGY    G      
Sbjct: 418 -LDEEGFEREMQAQRERARSASAFGM------DYNSLVKVEGETRFIGYQGTSG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S  V A+ +QG +V+   +G++  VV DQTPFYAE+GGQ+GD 
Sbjct: 465 -----------------SGKVLALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGDC 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+R  + D  K     F+HH IV+ G L T   +  T+D   R+  ++NHSATH
Sbjct: 508 GYLEAQGLRFDVRDTSKAGG-AFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HVSQ GS +    LRFD +H + I   +L+++ED VN  I +N  V  
Sbjct: 567 LLHAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVEI 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A A GA AL G KY D VRV+++    GG  S  LCGGTHV+ TG+I L  I 
Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R+L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQLE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +           S  ++  +  ++     +D K L +++D L+ K+ S +I+
Sbjct: 743 KELEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G+ ++ K  ++  VT+DL  R  A DL R +A  +GG G GGRP MAQ GG +  K D
Sbjct: 803 LGGV-QDDKVVLVAGVTQDLTSRLKAGDLMRQAAAAVGGKG-GGRPDMAQGGGTDAAKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A    F ++
Sbjct: 861 EALALALPFAQQ 872


>gi|319784062|ref|YP_004143538.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169950|gb|ADV13488.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 888

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/902 (52%), Positives = 632/902 (70%), Gaps = 37/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+K GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRKEGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            +T QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T+EF L
Sbjct: 61  ASTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 SKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIATSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI A+    G   +   + ++RVI DHLRSSSFL+ADG+LP+NEGRGY
Sbjct: 241 VESVFETDLFRHLIDAASSAIGHGPDKETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLITETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      L   ++L+G+ AFKLYDT+G PLD+ QD L  +    +D   F 
Sbjct: 361 KTLVRGLGLLSEATETLHAGDMLDGETAFKLYDTYGFPLDLTQDALR-QRSISVDTAGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++ AR H  G G   TE IWFS++EK GAT+F+GY+                  
Sbjct: 420 NAMEQQKAEARKHWAGSGDAATETIWFSVREKAGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I++A+V+ G+ V+ A  G  V +V +QTPFYAE+GGQ+GDTG   G+G 
Sbjct: 462 -----TEAAEGIIQALVRDGKAVDGAGKGDAVAIVVNQTPFYAESGGQMGDTGVISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++++D QKKA+G+FVH   V  G ++T  ++ L +D+  R +L  NHSATHL+H AL  
Sbjct: 517 SIEVSDTQKKADGLFVHIGKVASGTVKTGAAVELKVDHARRSRLRANHSATHLIHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS + P+ LRFD++H+KPI++ +L+ +E   N+I+ QN PV TR+M+ +DA
Sbjct: 577 VLGSHVAQKGSLVAPERLRFDISHNKPISAEDLEEVERMANEIVVQNGPVTTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV +TG+I L+ +VS+S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR HL  QD +LK+ A+ LK+S  +V  RVE + EE +KL+   
Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKATAAVLKISPADVPARVETLLEERKKLEKEL 756

Query: 775 AKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + + +L +   S          +A V F+   +S V  K+LK + DA +  + SG+++ 
Sbjct: 757 TEARKKLALGGGSSADAPAANETVAGVGFLGKTVSGVSPKDLKPLADAGKTSLGSGVVVF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG  ++ KASV++ VT+DL+ RF+AVDL R+++  LGG GGGGRP MAQ+GGP+ +KAD 
Sbjct: 817 VGSGEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKADD 876

Query: 888 AI 889
           AI
Sbjct: 877 AI 878


>gi|149911059|ref|ZP_01899687.1| alanyl-tRNA synthetase [Moritella sp. PE36]
 gi|149805885|gb|EDM65873.1| alanyl-tRNA synthetase [Moritella sp. PE36]
          Length = 873

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/911 (42%), Positives = 528/911 (57%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL++F   GH    SSSL+P NDPTL+FTN+GM  FK++F G E+  Y   
Sbjct: 3   MSTAEIRNAFLDYFASKGHNKGTSSSLVPANDPTLLFTNAGMNQFKDVFLGAEQRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT    + 
Sbjct: 63  TTSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAILFAWEFLTVVLKIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + +L +TVY+ D EAF  W    G+  DKIIRI           DNFWSM +TGPCGPCS
Sbjct: 123 KEKLLVTVYESDNEAFSFWANKVGVPEDKIIRIGDKSPEKKFESDNFWSMGDTGPCGPCS 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG+PGS  E+G+R+IEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 183 EIFYDHGEDIWGGVPGSPEEDGDRFIEIWNLVFMQFNRQADGTMEELPKPSVDTGMGLER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+F+ LI+   ++ G         + RVI DH+R+ SFLI+DG++P
Sbjct: 243 IAAIMQNVHSNYEIDIFQSLIKHVAELIGTTD--LEHKSLRVIADHIRACSFLISDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG   P    L+  +   MG    +L++ + ++E+ L 
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGPFFNKLVAKMVELMGDISDDLVKQQAIVEKILL 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+FGKTL+RGL +LD  LS L   +++ GDV FKLYDT+G P D+  DI   R L  
Sbjct: 361 IEEEQFGKTLERGLNILDNELSQLD-GKVVPGDVVFKLYDTYGFPSDLTADIARERELT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+E QR+RAR  S           +  + +    T+F+GY  L         
Sbjct: 419 IDEDGFKTAMEAQRNRARQGSNFG------TDYNEMLKIDAKTEFLGYQTLTSD------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + + A+++    VE    GQ+  +V ++TPFYAEAGGQ GD G
Sbjct: 467 -----------------AQIVALIKDNAEVELLNDGQEGAIVLNKTPFYAEAGGQSGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     +TD +K        H     G++     ++  +D   R+ + +NHS THL
Sbjct: 510 VIKIGDAVFTVTDTKKAGNATI--HFGSVSGVIEVNSQVIADVDVSRRKAIGLNHSVTHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
            H AL  ++G +V Q GS + P+ LRFD +H + +T A+L  +E  VN  I  N  VVT 
Sbjct: 568 AHAALRKVVGDNVQQKGSLVLPERLRFDFSHFEGVTPAQLIEVERLVNAQIRANHEVVTE 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ + A  +GA AL G KY+D VRVV +     G  S  LCGGTHV  TG+I    I+S
Sbjct: 628 VMDIDAAREAGAMALFGEKYDDEVRVVRM-----GDFSIELCGGTHVKRTGDIGFFKILS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG+RR+EA+TG  A +++     K++  AS +K  Q  VV +V ++ +  R L+ 
Sbjct: 683 ESGIAAGVRRVEAVTGDSALAYVHDLVAKMQETASLVKADQNTVVAKVSQVLDRNRSLEK 742

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K  +Q+              I  V  +   +   D K L+S MD L+ K+QSGII+L
Sbjct: 743 EVEKLNVQVASAANANLIDQVQVINGVKVLVANLKGADPKSLRSSMDELKNKLQSGIIVL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            GI  E K +++  VT+DL+ +  A +L    A  + GG GGGRP MAQ+GG N      
Sbjct: 803 -GIPGEGKVNLITGVTKDLIGKVKAGELVSFLAVQV-GGKGGGRPDMAQAGGSNPEALAA 860

Query: 888 AIAGVASFLKK 898
           A+  V  +L +
Sbjct: 861 ALESVTPWLTE 871


>gi|113461263|ref|YP_719332.1| alanyl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123132149|sp|Q0I426|SYA_HAES1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|112823306|gb|ABI25395.1| alanyl-tRNA synthetase [Haemophilus somnus 129PT]
          Length = 874

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/913 (42%), Positives = 543/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +   Y  
Sbjct: 1   MKTTAEIRQAFLDFFHSKGHQIVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLDTRSYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTSPEWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+  + IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPEEKLYVTVYETDDEAYGIWHKGVGVPENHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE + GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHVWGGLPGSEEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ V+Q   +NYDID+F+ LI    ++TG K       + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVIQHVNSNYDIDIFQKLIAKVAELTGEKD--LTNKSLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  +     L+P L   M +A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPVLIDVMATAGKDVKAKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L ++  D +L+G+VAFKLYDT+G PLD+  D+   R  
Sbjct: 359 LRLEEEQFARTLERGLALLDEALINVK-DGVLSGEVAFKLYDTYGFPLDLTADVCRERN- 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RA+A S           + ++    G T F GY          
Sbjct: 417 IRIDEEGFEREMEVQRLRAQAASRFG------VDYNNVIRVEGTTTFEGYTEAE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+  +G+ VE   +GQ   V+ D TPFYAE+GGQ+GD
Sbjct: 465 -----------------TQAKVTALFYEGKSVESISAGQSAVVILDDTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            GC I   +R  + D QK    +F H   + +G L    ++   +D ++R + S+NHSAT
Sbjct: 508 RGCLIATNMRFDVKDTQKYG-QVFGHIGTLIQGTLNVGQTINAVVDTEHRTKTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG+HV+Q GS ++   LRFD    + I   +L  IE  VN  I  N  VV
Sbjct: 567 HLLHAALRQVLGTHVAQKGSLVSDTILRFDFAQPEAIRQEQLFEIECLVNQHIRANHLVV 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  ++A A GA AL G KY D VRVV +     G  S  LCGG HV  TGEI L  I
Sbjct: 627 TEVMPIDEAKAKGAMALFGEKYGDVVRVVKM-----GEFSIELCGGIHVKRTGEIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSES+I AG+RR+EA+TG+ A + L  Q + L   A  LK    ++V +++++ ++ +K 
Sbjct: 682 VSESAIAAGVRRVEAVTGEAAINWLQQQQQILMQSADLLKSDANSLVEKIQQLQDKAKKT 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  +I  V+ +   +  +D K L+ ++D L+ ++ S +I
Sbjct: 742 EKELQALKEKSAMKAGSDIAKSAVEINGVSVIVQQLENMDVKSLRVIVDDLKNQLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             V    E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFV-TKTEDKVNLVVGVTTDLTSKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENI 859

Query: 886 DQAIAGVASFLKK 898
            +A+     +L K
Sbjct: 860 SKALTVCNEWLHK 872


>gi|146312813|ref|YP_001177887.1| alanyl-tRNA synthetase [Enterobacter sp. 638]
 gi|205830088|sp|A4WDQ6|SYA_ENT38 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145319689|gb|ABP61836.1| alanyl-tRNA synthetase [Enterobacter sp. 638]
          Length = 875

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/910 (43%), Positives = 562/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PG++ E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGTAEEDGDRYIEIWNIVFMQFNRQIDGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF  LI++  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFSTLIKSVAEVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVGVMGDAGEELKRQQSQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSQLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDSASEFQGYDRLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ V A+   G+ V+   +GQ   VV D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNAKVTALFVDGKAVDSISAGQDAVVVLDKTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+G    ++D QK       H   +  G L+    +   +D   R ++ +NHSATH
Sbjct: 510 GELKGNGFSFAVSDTQKYG-QAIGHIGKLASGSLKVGEGVQAEVDEARRERIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +  +E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRDVLGTHVAQKGSLVNDKILRFDFSHFEAMKPSEIRAVEDMVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  + ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIASLHAESDQLHDIAQLLKGDSHNLGEKVRSALERSRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q  V++          I  V  +   ++ V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAVQESANLSSKAVDIKGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATAV-DGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|238921100|ref|YP_002934615.1| alanyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
 gi|238870669|gb|ACR70380.1| alanyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 875

 Score =  911 bits (2353), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+F+   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGAQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKEKLWVTVYESDDEAFDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG P    E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI  + +V G+     +  + RVI DH+RS +FL++DG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIAETARVIGVSD--LSSKSLRVIADHIRSCAFLVSDGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MG++   L Q + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGHMLGAKEAFFYKLVKPLIAVMGASADALAQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G PLD+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLTLLDDELSTLD-GDTLDGETAFRLYDTYGFPLDLTADVCRERSLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E QR RAR       S      + S+    G+T F GY           
Sbjct: 420 -VDEEGFERAMEAQRCRARE------SSGFGADYNSMIRVDGSTDFTGY----------- 461

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             ++V A+   GE V+   +G++  VV  QTPFYAE+GGQ+GD 
Sbjct: 462 ------------HLQQQDALVTALFHNGEAVDVLQAGEEGVVVLAQTPFYAESGGQVGDR 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +  G R  + D QK  +    H   V +G LR    +   ID   R ++  +HSATH
Sbjct: 510 GELMAQGCRFVVEDTQKYGQ-AIGHLGKVAQGSLRVGERVQAGIDGARRERIRQSHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL ++LG HV+Q GS ++   LRFD +H++ +   +++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRSVLGEHVAQKGSLVSDGALRFDFSHAEAMKPRQIRQVEDIVNAQIRRNLPIDT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M  E+A A GA AL G KY+ +VRV+S+     G  S+ LCGGTH   TG+I L  IV
Sbjct: 629 QEMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GDFSTELCGGTHAERTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG++A   +  + + L+  AS +K    +V  ++  + E+ R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEQALLAMHQESDMLREAASLVKGDAQSVAEKIRAVMEKSRQLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         ++  V  +   +  V+ K L++++D L+ ++ S I++
Sbjct: 744 KALHQLKDQQAAQESASLSGKAVEVNGVKLLVSQLDGVEPKMLRTMVDDLKNQMSSCIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L       K S++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATAEA-GKVSLIAGVTKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDTAALP 861

Query: 887 QAIAGVASFL 896
           QA+A VA ++
Sbjct: 862 QALASVADWV 871


>gi|170727677|ref|YP_001761703.1| alanyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|205830209|sp|B1KPS5|SYA_SHEWM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169813024|gb|ACA87608.1| alanyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 874

 Score =  911 bits (2353), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/909 (41%), Positives = 545/909 (59%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAISFAWNFLTQELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EAF +W K  G+ A+ +IRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDDEAFDIWTKEIGVPAESLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG P    E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILGVTD--LENKSLRVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      L+P L   MG A   L++ + ++E++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATSSFFYKLVPTLIEVMGDAAKGLVETQAIVEKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LDG L+ L   ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDGALNELK-GDVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G  +  +    +    T F GY  L           
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GQFDTDYNDSLKIDEETHFSGYTEL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V AI + GE  +   +G+   +V D TPFY E+GGQ GD G  
Sbjct: 463 ------------TAQGKVTAIYKAGESTDSLNAGEDAVIVLDSTPFYGESGGQCGDKGLL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G+   + D QK  + +      V  G +    +L   +D + R +  +NHS THLLH
Sbjct: 511 TAKGVEFDVKDTQKYGQAVGHQ-GTVNSGSISVGDTLEAIVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS +  + LRFD +H + +   ELK++ED VN  I +N  +   +M
Sbjct: 570 AALRQLLGTHVTQKGSLVDAERLRFDFSHFEGVKPEELKAVEDLVNTQIRRNHKLSADVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A   GA AL G KY D VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DMDQAKERGAMALFGEKYTDEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L   A+ LK    +VV +++   +  + L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAAQKAELDQAAALLKADSNSVVTKLKAQLDRTKLLEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +L             ++     +   +  VD+  L+ + D L++K+ SG+++L  
Sbjct: 745 SQLKDKLAAATSADLAGEAKQVNGAKVLIKKLEGVDAGALRGLQDELKQKLGSGVVVLA- 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ E K ++++ VT+DL  +  A +L    A  + GG GGGRP MAQ+GG    K D A+
Sbjct: 804 IAGEAKVNLIVGVTKDLTAKVKAGELVASIAAQV-GGKGGGRPDMAQAGGTEPEKLDGAL 862

Query: 890 AGVASFLKK 898
             V  +L++
Sbjct: 863 EQVLPWLEE 871


>gi|92112758|ref|YP_572686.1| alanyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
 gi|122420679|sp|Q1QZX1|SYA_CHRSD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91795848|gb|ABE57987.1| alanyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
          Length = 868

 Score =  911 bits (2353), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/903 (44%), Positives = 548/903 (60%), Gaps = 47/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+++GH ++PSSSL+P NDPTL+FTN+GMVPFK++F G++   Y   
Sbjct: 1   MKSADIRQAFLTFFEEHGHTIVPSSSLVPANDPTLLFTNAGMVPFKDVFLGRDPRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+   L 
Sbjct: 61  TSAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRGAIRFAWTFLTERLGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L++TV+  D+EA ++WK   G+   +  ++   DNFW M +TGPCGP SEIFFD G 
Sbjct: 121 ADKLWVTVHVSDDEAERIWKDEIGIDPARFSKL-DEDNFWQMGDTGPCGPSSEIFFDHGP 179

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS  E+G+RYIEIWNLVFMQF++ +      LPK SIDTGMGLER+A VLQ  
Sbjct: 180 EVAGGPPGSPEEDGDRYIEIWNLVFMQFDRDSAGTLNPLPKPSIDTGMGLERVAAVLQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF++L+ A+ + TG  Y+  +  + RVI DH+RS +FLI D +LP+NEGRGYV
Sbjct: 240 HSNYEIDLFQNLLNAASEATG--YDDTSAPSLRVIADHIRSCAFLITDDVLPSNEGRGYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L+ AL  EMG+AYPEL +A+  IE+ L  E+E+F +
Sbjct: 298 LRRIIRRAIRHGHKLGAREPFFHTLVAALDAEMGAAYPELRKARPRIEKVLLKEEEQFAR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD G+ LL   L  L   E+L G+  FKLYDT+G P D+  D+   RG+  +D + F +
Sbjct: 358 TLDHGMGLLTEALETLD-GEVLPGETVFKLYDTYGFPFDLTADVCRERGVT-LDEVGFQR 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            LE QR RARA S           + +  +  G T F GY+ L                 
Sbjct: 416 ELEAQRERARAASQFG------ADYTAALDLEGETAFTGYERLED--------------- 454

Query: 481 PIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    + V A+V  +G  +    +GQ   VV D+TPFY E+GGQ GDTG    DG+
Sbjct: 455 --------EARVTALVDREGNALAALEAGQHGVVVLDRTPFYGESGGQAGDTGYLEADGM 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R Q+TD QK+     +HH ++  G L    S+   +D   R     NHSATHLLH AL  
Sbjct: 507 RFQVTDTQKQGGH-HLHHGVLVEGRLDVGASVTPRVDASLRAATMRNHSATHLLHEALRQ 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +T + LRFDV+H + +T A+L  +E  VN  I  N       M  ++A
Sbjct: 566 VLGEHVQQKGSLVTAERLRFDVSHFEAMTRAQLDEVERIVNAQILANAATRIEHMTLDEA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GAAAL   KY D VRV+++  +D    S  LCGGTHV+ +G+I   +I+SE+ + AG
Sbjct: 626 KAKGAAALFEAKYADSVRVLTIGADD---FSIELCGGTHVARSGDIGCFHILSEAGVAAG 682

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG+ A ++   Q+ K+  +A  LK     V  R+E   E  R L+    + K 
Sbjct: 683 VRRIEAVTGEGALAYFRDQEAKVARVAEQLKAKPEQVEARLEATLERNRTLEKELERLKA 742

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L             ++A V  ++  +  V  KEL+ ++D L+ K+ SG+I+L G++ ++
Sbjct: 743 KLASATSGDMLADVREVAGVKLLAKQVEGVGGKELRGLLDQLKNKLGSGVIVL-GVAGDE 801

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S++  VT+DL  R  A DL +  A+ + GG GGGR  MAQ+GG        A+A V S
Sbjct: 802 KVSLIAGVTDDLTARLKAGDLVKHVAEQV-GGKGGGRADMAQAGGSRPQALPDALASVPS 860

Query: 895 FLK 897
           +++
Sbjct: 861 WVE 863


>gi|327480000|gb|AEA83310.1| alanyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 874

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/912 (43%), Positives = 548/912 (60%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD GE I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ A+    G         + +V+ DH+RS  FLIADG+ 
Sbjct: 241 RISAVLQHVNSNYEIDLFQSLLNAAADAIGCA--NEGQASLKVVADHIRSCGFLIADGVT 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KNEEEQFAKTLEQGLKILEQDLAGLA-GSVIPGEVVFKLYDTYGFPVDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +  G T+FIGY    G      
Sbjct: 418 -LDEEGFEREMQAQRERARSASAFGM------DYNSLVKVEGETRFIGYQGTSG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S  V A+ +QG +V+   +G++  VV DQTPFYAE+GGQ+GD 
Sbjct: 465 -----------------SGKVLALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGDC 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+R  + D  K     F+HH IV+ G L T   +  T+D   R+  ++NHSATH
Sbjct: 508 GYLEAQGLRFDVRDTSKAGG-AFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HVSQ GS +    LRFD +H + I   +L+++ED VN  I +N  V  
Sbjct: 567 LLHAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVEI 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A A GA AL G KY D VRV+++    GG  S  LCGGTHV+ TG+I L  I 
Sbjct: 627 EETDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R+L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQLE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +           S  ++  +  ++     +D K L +++D L+ K+ S +I+
Sbjct: 743 KELEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G+ ++ K  ++  VT+DL  R  A DL R +A  +GG G GGRP MAQ GG +  K D
Sbjct: 803 LGGV-QDDKVVLVAGVTQDLTSRLKAGDLMRQAAAAVGGKG-GGRPDMAQGGGTDAAKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A    F ++
Sbjct: 861 EALALALPFAQQ 872


>gi|238786914|ref|ZP_04630715.1| Alanyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238725282|gb|EEQ16921.1| Alanyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 875

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/911 (42%), Positives = 551/911 (60%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANEVGVPRERIIRIGDNKGAAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF++LI A   VTG      +  + RVI DH+R+ +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRNLISAVADVTGATD--LSSKSLRVIADHIRACAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGSAADELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L  L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELDKLT-GDTLDGETAFRLYDTYGFPIDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + +L     A+QF GYD +        
Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNNLIRVDSASQFSGYDHV-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GD 
Sbjct: 465 ---------------HQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK       H   +  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFAVADTQKYG-QAIGHLGQLTHGTLRVNHSVDAQVDVVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDIVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  E A   GA AL G KY+D+VRV+++     G  S+ LCGG H + TG+I L  I+
Sbjct: 629 EVMELEAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHANRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L  +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLADVAHLVKGDTNNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +        +  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLVKGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTSKVKAGELIADIAQQV-GGKGGGRPDMAQAGGSDVQALP 861

Query: 887 QAIAGVASFLK 897
            A+A V ++++
Sbjct: 862 SALASVEAWVE 872


>gi|123441185|ref|YP_001005172.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|205830291|sp|A1JK09|SYA_YERE8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122088146|emb|CAL10934.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 875

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDIGIPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  +VTG      +  + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + +L     A+QF GY+ +        
Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNNLIRVDSASQFSGYNHV-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GDT
Sbjct: 465 ---------------HQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK       H   +  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFAVADTQKYG-QAIGHLGQLTHGTLRVNHSIDAQVDVARRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDTNNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +        +  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG N     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTSKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTNVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 SALASVEAWV 871


>gi|117621345|ref|YP_858162.1| alanyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|205829972|sp|A0KPG1|SYA_AERHH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117562752|gb|ABK39700.1| alanyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 874

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/910 (41%), Positives = 551/910 (60%), Gaps = 53/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IRT FLE+F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   MSTSEIRTAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+   L 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWGFLTEVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RL +TVY  D+EAF +W+K  G+ AD+I+RI  N       DNFW+M +TGPCGPC+E
Sbjct: 123 KERLLVTVYATDDEAFDIWEKEVGVPADRIVRIGDNKGAPYASDNFWAMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS  E+G+R+IEIWN+VFMQF +Q       LP+ S+DTGMGLER+
Sbjct: 183 IFYDHGDHIWGGRPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+ + ++ G      +  + RVI DH+RS +FL+ADG++P+
Sbjct: 243 SAIMQGVHSNYEIDIFQALIKKAAEIVGTSD--LSNQSLRVIADHIRSCAFLVADGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ + R LG TE     L   L  +M     ELI    L+E  LR 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGRKLGATEVFFYKLAAELAAQMKDVAAELIAQLPLVERVLRI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TLDRGL+LL+ VL++LG  +++ G+V FKLYDT+G P D+  D++  R   GI
Sbjct: 361 EEEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVRER-EIGI 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F   +E+QR+RA+  S    +      +  + +    T F GY  L          
Sbjct: 420 DEEGFKAEMEKQRARAKEASSFGVN------YNEMLKLDFETPFTGYKTL---------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  I +  + V   ++G +  +V +QTPFYAE+GGQ+GD+G 
Sbjct: 464 -------------TERTRVVGIYKGVDEVSGLIAGDEAVIVLEQTPFYAESGGQIGDSGT 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     +TD  K  + I      +E G L     +   +D + R+ +++NHS THLL
Sbjct: 511 LKVDDGIFAVTDTVKAGKAIIHK-GYMELGTLEKGAEVEAVVDGERRQAIALNHSVTHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL   LG HV+Q GS +  + +RFD +H + +T A ++ +E+ VN+ I  N  + T++
Sbjct: 570 HAALRQALGEHVTQKGSLVGAERMRFDFSHFEGMTMATIRRVEELVNNQIRANHEITTQL 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A ++GA AL G KY D VRVV +     G +S+ LCGGTH   TG+I    I++E
Sbjct: 630 MDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIAE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG+RRIEA+TG+ A   +    E+++  A+ +K  Q  +  +V ++ ++ + ++  
Sbjct: 685 SGIAAGVRRIEAVTGKAAIDFMHQVGEQIEEAAALVKGDQFCIADKVRQVLDKAKMMERE 744

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K +L  +  +       +I     +   +   D K L+ ++D L+ +++SG+++L 
Sbjct: 745 LEQLKAKLAAQAGNDLLGQVIEIKGQKVLVAALEGADPKSLRGMLDELKNQMKSGVVLLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             S E K +++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 -TSGEGKVNLIAGVTNDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPAA 862

Query: 889 IAGVASFLKK 898
           +  V S+L++
Sbjct: 863 LQSVHSWLEE 872


>gi|307825703|ref|ZP_07655920.1| alanyl-tRNA synthetase [Methylobacter tundripaludum SV96]
 gi|307733280|gb|EFO04140.1| alanyl-tRNA synthetase [Methylobacter tundripaludum SV96]
          Length = 870

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/903 (41%), Positives = 539/903 (59%), Gaps = 46/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +RT FLEFF++ GH + PSSSLIP NDPTL+FTN+GMV FK++F G++   Y   
Sbjct: 4   MTSAQLRTAFLEFFRERGHAIQPSSSLIPGNDPTLLFTNAGMVQFKDVFLGRDHRDYNKA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AWD LTKE ++ 
Sbjct: 64  ATSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFAWDFLTKELEIP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ITV+DED EA K+W    G+S  +  RI   DNFWSM + GPCGPC+EIF+D G 
Sbjct: 124 AEKLWITVFDEDSEAEKIWLDDVGVSPVRFSRIGAKDNFWSMGDVGPCGPCTEIFYDHGA 183

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG P    E+G+RYIEIWNLVFMQ+++        LPK S+DTGMGLER+A VLQ  
Sbjct: 184 DIAGGPPGSPDEDGDRYIEIWNLVFMQYDRSADGSLTPLPKPSVDTGMGLERIAAVLQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ L++A+ ++ G         + RVI DH+RS +FLIADG++P+NEGRGYV
Sbjct: 244 HSNYEIDLFQKLLKAAAELAGTSD--LTQSSLRVIADHIRSCAFLIADGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRA+ +   LG  +     L+  L  EMG A+PEL  A+  +E  L+ E+ERF +
Sbjct: 302 VRRIIRRAIRHGYRLGIRDVFFYKLVAPLAEEMGEAFPELKAAQEQVERVLKKEEERFAE 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++G+ +L+  ++ +    ++ GD  F+LYDT+G P+D+  D      L  +D   F  
Sbjct: 362 TLEQGMKILEACVAKME-GSVIPGDTVFQLYDTYGFPVDLTADFARENNLT-VDHAGFET 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+  QR RAR+ S           +    +    T+F GYD L                 
Sbjct: 420 AMSAQRERARSASSFG------ADYDQDIKLDAQTEFTGYDHLDDQVH------------ 461

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      +  + ++G+ V+    G++  V+ D+TPFYAE+GGQ+GD G    DG  
Sbjct: 462 -----------IIGLYKKGQPVDSLEDGEEGVVILDKTPFYAESGGQIGDCGKIEADGAV 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++TD QK+   +F+H   +  G L         +   +R    +NHSATHLLH AL  +
Sbjct: 511 FEVTDTQKQGGNLFLHKGKLLTGTLTNGQLCDARVSAADRTATELNHSATHLLHAALRQV 570

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P+ LRFD +H +P+T++E+ ++E  VN+ I  N PV  ++M ++DA+
Sbjct: 571 LGDHVAQKGSLVNPERLRFDFSHFEPVTASEISTVERIVNEQIRANNPVSAQVMAKDDAV 630

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY D VRV+ +     G  S+ LCGGTHV   G+I    I++E+ + AG+
Sbjct: 631 KAGAMALFGEKYGDEVRVLKI-----GEFSTELCGGTHVERAGDIGCFKIINETGVAAGV 685

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG      + G+D  L S+A  +K +      +VE++ E+ R L+    +   +
Sbjct: 686 RRIEAVTGGGCIEWIAGRDHALASIAGLVKSAPEKTPEKVEQLIEKNRLLEKQLERLNAK 745

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L              +  +  ++  +  VD K LK ++D L+ K+ S  I+L  +  + K
Sbjct: 746 LASSAGNELGAQAVDVGGIKVLAVKLDGVDPKSLKDMVDQLKNKLGSAAIVLAVVDGD-K 804

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+D + R  A DL    A  + GG GGGRP MAQ+GG + +    A+A V ++
Sbjct: 805 VSLIAGVTKDQMGRIKAGDLVNFVATKV-GGKGGGRPDMAQAGGNDPSGLADALAQVPAW 863

Query: 896 LKK 898
           +K+
Sbjct: 864 VKE 866


>gi|85058516|ref|YP_454218.1| alanyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans']
 gi|123520018|sp|Q2NVL2|SYA_SODGM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|84779036|dbj|BAE73813.1| alanyl-tRNA synthase [Sodalis glossinidius str. 'morsitans']
          Length = 875

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 547/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +   Y+  
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDNRFYRRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTGEHWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYNIWASEVGIPAERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTLLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLFK LI A+ + TG      +  + RVI DH+RS  FL++DG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFKTLIAAAAEATGASD--PDSKSLRVIADHIRSCVFLVSDGVV 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG ++     L+  L   MGSA  +L   + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAIRHGNMLGASDTFFYKLVAPLIDVMGSAASQLQPQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R+E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G  LD+  D+   R L 
Sbjct: 361 RAEEEQFARTLERGLTLLDDELAKLT-GDTLDGETAFRLYDTYGFSLDLTADVCRERNLR 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E QR RAR       S      + SL      T+F GY+ L        
Sbjct: 420 -VDEAGFERAMEAQRKRARE------SSGFGADYNSLLRVDETTRFFGYEHLEH------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+ + G++V     G++  VV D+TPFY E+GGQ+GD 
Sbjct: 467 -----------------QGRVTALFRDGQLVGVIRQGEEAVVVLDETPFYGESGGQVGDR 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++ D QK  +  F H   +  G L+    +   +D   R ++ +NHSATH
Sbjct: 510 GVLKAASGVFEVADTQKYGK-AFGHQGKLSYGELKLGAQVTAQVDSARRERIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H++ +   +++ +E+ VN+ I  NLP+ T
Sbjct: 569 LLHAALRQVLGDHVGQKGSLVNDHYLRFDFSHNEAMKPEQIRRVEEIVNEQIRCNLPIQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  EDA   GA AL G KY  +VRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 DIMALEDARNKGAMALFGEKYEAQVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEA+TG+ A + L  Q + ++ +A  +K     +V +V  + E  R+L+
Sbjct: 684 AESGTAAGIRRIEAVTGEEALASLHQQSDLVQHIAQLVKGDSQTLVDKVRALQERSRQLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +        I  V  +   +   + K L++++D L+ ++ S +I+
Sbjct: 744 KDLQQLKNQQAAQESASLGRNVRDINGVKVLVRQLDSAEPKMLRTMVDDLKNQLGSAVII 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  VT+DL DR  A D+    A+ + GG GGGRP +AQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVTKDLTDRVKAGDIVGHLAQQV-GGKGGGRPDLAQAGGSDIAALP 861

Query: 887 QAIAGVASFL 896
            A+A V + L
Sbjct: 862 AALASVDAML 871


>gi|121998432|ref|YP_001003219.1| alanyl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|205830063|sp|A1WXK5|SYA_HALHL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|121589837|gb|ABM62417.1| alanyl-tRNA synthetase [Halorhodospira halophila SL1]
          Length = 863

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/902 (42%), Positives = 537/902 (59%), Gaps = 49/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF++ GHE++PSS L+P NDPTL+FTN+GMVPFK +F G+E+  YQ  
Sbjct: 1   MTSAQLRAAFLDFFRERGHEVVPSSPLVPANDPTLLFTNAGMVPFKEVFLGREQRGYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+  +L 
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIRYAWSFLTEVVELP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY++D+EA ++W +  G+   +  RI  +DNFWSM +TGPCGPCSE+F+D G 
Sbjct: 121 PERLWVTVYEDDDEAAQIWLEEIGVDPARFRRIGAHDNFWSMGDTGPCGPCSEVFYDHGP 180

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS  E+G+RYIE+WNLVFMQ+++  +     LP  SIDTGMGLER+A VLQ  
Sbjct: 181 EVPGGPPGSDEEDGDRYIEVWNLVFMQYDRDAEGNLNPLPSPSIDTGMGLERLAAVLQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +N++ DLF  LI A+ ++ G+        + +V+ DH+R+ SFLI DG+LP+ EGRGYV
Sbjct: 241 HDNFETDLFTPLIDAAGEIAGVSDRR--KPSLKVVADHIRACSFLIVDGVLPSTEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L+  L   MG A+PEL   +  +E+ L  E++RF +
Sbjct: 299 LRRIIRRAVRHGYQLGIDEPFFYRLVDPLDAVMGEAFPELRDRREFVEKILFQEEKRFRE 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+ GL LLD  L       +++G+V FKLYDTHG P+D+  DI   R L  +D   F  
Sbjct: 359 TLEDGLALLDEYLGG-NDSGVIDGEVVFKLYDTHGFPVDLTADIARERNLE-VDYQGFEA 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQR RARA S   G+              G ++F GY+ L                 
Sbjct: 417 RMAEQRERARAASRFGGA-------REEVVDAGESRFTGYETLEDV-------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      V  + Q G  V+    G++  VV D+TPFYAE+GGQ+GD G  + +G+R
Sbjct: 456 ---------GSVIGLYQDGRSVQRLQPGEEGMVVLDRTPFYAESGGQVGDRGEILANGLR 506

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D  K+ E    H   +E G L     +   +D   R     NHSATHLLH AL  I
Sbjct: 507 FRVADTVKQGE-AHGHLGRLESGELGVGDQVTARVDRGTREATVRNHSATHLLHAALREI 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS + PD LRFD +H +  +  +L+ IE  VN  I  N PV    M  E+A+
Sbjct: 566 LGDHVQQKGSLVAPDRLRFDFSHYEAPSREDLERIEARVNQEILTNHPVEAAHMAYEEAV 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY D VRV+S+     G +S  LCGGTH + TG+I L  I+ E+ +  G+
Sbjct: 626 QVGAMALFGEKYGDTVRVISL-----GDYSQELCGGTHAARTGDIGLFKIIDETGVAGGV 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEAITG+RA   +   + +L  LA  L+V   N+V +VE++ E  R+ +    + K +
Sbjct: 681 RRIEAITGERAIGWVQEAEGRLNRLADLLRVGPDNLVMKVEQLSERTREQEKEIERLKQK 740

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  +          ++A V F++  +     K L+  +D L+ ++ SG+I+L  +  E K
Sbjct: 741 LATQAGRSLLDDAGEVAGVRFLATCVEG-GGKGLRDTLDQLKNQLGSGVIVLAAVQGE-K 798

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT+DL DR  A DL    A  + GG GGGR   AQ+GG + +  + A+A V ++
Sbjct: 799 VQLVAGVTKDLTDRLAAGDLVNHVAAQV-GGRGGGRADFAQAGGKDPSHVNDALASVEAW 857

Query: 896 LK 897
           +K
Sbjct: 858 IK 859


>gi|329894416|ref|ZP_08270263.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328923063|gb|EGG30387.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 866

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/902 (43%), Positives = 537/902 (59%), Gaps = 47/902 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  V  IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G E   Y  
Sbjct: 1   MKTV-EIREAFLSYFESQGHTRVASSSLVPENDPTLLFTNAGMNQFKDTFLGSEPRDYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+   L
Sbjct: 60  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWTFLTEVLGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL++TV+  D+EA  +W K  G+SA++  R+   DNFW M +TGPCGP SEIF+D G
Sbjct: 120 PEDRLWVTVHVSDDEAADIWIKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHG 178

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS +++ +RYIEIWNLVFMQF +    E   LPK S+DTGMGLER+A V+Q 
Sbjct: 179 ADVPGGPPGSENDDLDRYIEIWNLVFMQFNRDASGELHPLPKPSVDTGMGLERIAAVMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+A+ Q        +N  + RVI DH+RS SFLI DG++P NEGRGY
Sbjct: 239 VHSNYEIDLFQALIKAAAQAVNCNNLLDN--SLRVIADHIRSCSFLIVDGVVPGNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG TEP    L+ AL  +MG AYPEL Q    + + L  E+++F 
Sbjct: 297 VLRRIIRRAVRHGNKLGATEPFFYKLVDALSAQMGEAYPELAQQAGRVAQVLLQEEQQFA 356

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD G+ +L+  L  L   EI  GD+ FKLYDT+G P+D+  DI   RGL  +D+  ++
Sbjct: 357 KTLDNGMQILEESLEGLQGGEI-PGDIVFKLYDTYGFPVDLTNDIARERGLT-LDMAGYD 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ +QR+R++     +        +       GAT+F+GY                   
Sbjct: 415 EAMAKQRARSQEGGKFV------VDYSKTIALEGATEFLGYSD----------------- 451

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  V+ I+  GE V    +GQ+  VVFD+TPFYAE+GGQ GDTG     G+
Sbjct: 452 ------AKASGTVEVIIVDGEKVSTLAAGQQGVVVFDRTPFYAESGGQTGDTGGLTAPGL 505

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D  K+ + + +HH  VE G L    S+ + ID   R Q+  NHSATHLLH AL  
Sbjct: 506 SARVLDTTKQGD-LHLHHVHVESGELAVAASVSMQIDEHLRDQIRANHSATHLLHAALRQ 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +T + LRFD +HS P+T+ EL  +   VN  +  N  V TR+MN ++A
Sbjct: 565 VLGGHVQQKGSLVTAERLRFDFSHSAPVTADELAQLNAIVNAQVMANTEVSTRLMNMDEA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + +GA AL G KY D VRV+++        S  LCGGTHV  TG+I +  IVSES I AG
Sbjct: 625 VQAGAMALFGEKYGDEVRVLAMGT---DSFSVELCGGTHVGRTGDIGVFRIVSESGIAAG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG  A + +   D  L+ +   LK    NVV RV  +  + R+L+    + K+
Sbjct: 682 VRRIEAVTGVGALAEINSLDTALQGVCLELKAQPENVVSRVAAMRGQIRELEKQIDQLKM 741

Query: 780 QLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           ++             ++  V  ++  +   D+K L+  +D ++ K+   +++L  +  + 
Sbjct: 742 KMAQAAGGELASQAIEVRGVPVLAARLDGADAKALRDAVDQMKSKLGDSVVLLASVV-DD 800

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  +   V++ + DR  A DL R  A  L GG GGGRP MAQ GG +    +  +  V +
Sbjct: 801 KIVLAAGVSKAVTDRVKAGDLMREFATRL-GGKGGGRPDMAQGGGTDVAALNDVLGAVPA 859

Query: 895 FL 896
           ++
Sbjct: 860 WV 861


>gi|204928130|ref|ZP_03219330.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204322452|gb|EDZ07649.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 876

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDRTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|330831302|ref|YP_004394254.1| alanyl-tRNA synthetase [Aeromonas veronii B565]
 gi|328806438|gb|AEB51637.1| Alanyl-tRNA synthetase [Aeromonas veronii B565]
          Length = 874

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/910 (40%), Positives = 548/910 (60%), Gaps = 53/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR  FLE+F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   MSTSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+   L 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWGFLTEVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RL +TVY  D+EAF +W+K  G+ AD+I+RI  N       DNFW+M +TGPCGPC+E
Sbjct: 123 KDRLLVTVYATDDEAFDIWEKEVGVPADRIVRIGDNKGAPYASDNFWAMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS  E+G+R+IEIWN+VFMQF +Q       LP+ S+DTGMGLER+
Sbjct: 183 IFYDHGDHIWGGRPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+ + ++ G      +  + RVI DH+RS +FL+ADG++P+
Sbjct: 243 SAIMQGVHSNYEIDIFQALIKKAAEIVGTTD--LSNQSLRVIADHIRSCAFLVADGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ + R LG T+     L   L  +M     ELI    L+E  LR 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGRKLGATDVFFYKLAAELAVQMKDVAAELIAQLPLVERVLRI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TLDRGL+LL+  L++LG  +++ G+V FKLYDT+G P D+  D++  R   GI
Sbjct: 361 EEEQFVRTLDRGLLLLEDALANLGDAKVIPGEVVFKLYDTYGFPADLTADVVRER-EIGI 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F   +E+QR+RA+  S    +      +  + +    T F GY  L          
Sbjct: 420 DEEGFKAEMEKQRARAKEASSFGVN------YNEMLKLDFETPFTGYKTL---------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  I +  E V   ++G +  +V ++TPFYAE+GGQ+GD+G 
Sbjct: 464 -------------TERTRVVGIYKGVEEVSGLIAGDEAVIVLEETPFYAESGGQIGDSGT 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     +TD  K  + I      +E G L     +   +D   R+ +++NHS THLL
Sbjct: 511 LKVDDGIFAVTDTLKAGKAIIHK-GYMELGTLEKGAEVEAVVDGDRRQAIALNHSVTHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL   LG HV+Q GS +  + +RFD +H + +T A ++ +E+ VN+ I  N  + T++
Sbjct: 570 HAALRQALGEHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNNQIRANHEITTQL 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A ++GA AL G KY D VRVV +     G +S+ LCGGTH   TG+I    I++E
Sbjct: 630 MDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIAE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG+RRIEA+TG+ A   +    E+++  A+ +K  Q  +  +V ++ ++ + ++  
Sbjct: 685 SGIAAGVRRIEAVTGKAAIDFMHQVGEQIEEAAALVKGDQFCIADKVRQMLDKAKMMERE 744

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K +L  +  +       +I     +   +   D K L+ ++D L+ +++SG+++L 
Sbjct: 745 LEQLKAKLAAQAGNDLLGQVIEINGQKVLVAALEGADPKSLRGMLDELKNQMKSGVVLLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K +++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 TCA-DGKVNLIAGVTNDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPAA 862

Query: 889 IAGVASFLKK 898
           +  V S+L++
Sbjct: 863 LQSVHSWLEE 872


>gi|311694210|gb|ADP97083.1| alanyl-tRNA synthetase, class IIc [marine bacterium HP15]
          Length = 876

 Score =  909 bits (2350), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/912 (42%), Positives = 552/912 (60%), Gaps = 54/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL++F++ GH ++PSSSL+P +DPTL+FTN+GM  FK++F G+E+  Y   
Sbjct: 1   MKTAELRQAFLDYFKQQGHTIVPSSSLVPADDPTLLFTNAGMNQFKDLFLGREERDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT     +
Sbjct: 61  TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINYAWTFLTGENWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L Q +L++TVY ED+EAF +W K  G+ AD+I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPQEKLWVTVYAEDDEAFDIWNKEIGVPADRIVRIGDNKGGRYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  + GG PGS  E+G+RYIEIWN+VFMQ+ +    E   LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRTADGEMLKLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF+ L+ A+ Q+ G         + RV+ DH+RS +FLIADG++
Sbjct: 241 RITAVLQGVHSNYEIDLFQDLLAAASQILGGA--ATTEASLRVVADHIRSCAFLIADGVM 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRG+VLRRI+RRA  +   LG T P    L  ALC  MG A+P+L+ ++  IE+ L
Sbjct: 299 PSNEGRGFVLRRIIRRAARHGNKLGATGPFFYKLTGALCELMGEAFPQLVSSRKQIEKVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTLD+GL LL+  ++ L   EI  G+  F LYDT+G P+D+  DI   RGL 
Sbjct: 359 LQEEEQFAKTLDKGLRLLEQDIAELKGTEI-PGETIFTLYDTYGFPVDLTNDIARERGLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   + +A+E QR RARA S          +        G T+F GY+ + G +    
Sbjct: 418 -LDYEGYEKAMEGQRERARAASKFGIDYNAAGLQLE-----GKTEFTGYEHIDGHE---- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               ++A++  GE  + A +G +  VV ++TPFYAE+GGQ+GDT
Sbjct: 468 -------------------KIRAVIVNGEE-KTAEAGDEAVVVLERTPFYAESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G R ++TD +K+ +   +H   +  G L   + +   ID+  R +   NHSATH
Sbjct: 508 GLLTWSGGRFKVTDTRKEGDN-HLHLGTLIEGELFPGLEVDARIDHARRERTKRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS + PD LRFD +H + +T  +L+ IE  VN+ I +N PV T
Sbjct: 567 LLHAALRKVLGEHVSQKGSLVDPDKLRFDFSHFEAVTPEQLREIERQVNEQILENSPVQT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I + E A   GA AL G KY D VRV+S+  ++   +S  LCGGTHVS TG+I L  I 
Sbjct: 627 EITDMEKAQEKGAMALFGEKYGDVVRVLSMGTDN---YSVELCGGTHVSRTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG  A   + G +  L+  A  +K S+ +V+ +V++  +  R+L+
Sbjct: 684 SESGISSGVRRIEAVTGMGALDWIDGTERTLREAARLVKGSRESVIEKVQQTIDRNRQLE 743

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L          +   +  +  ++  +   D K L    D L+ K+  G+++
Sbjct: 744 KEVDALKAKLASSAGTDLASTAVDVGGLKVVASELEGADRKALMETADQLKNKLGEGVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + ++ K +++  VT+    R  A DL +  A  +  G GGGRP MAQ GG + +K +
Sbjct: 804 LASV-EDGKVTLVAGVTKSATGRIKAGDLMKHLAAQV-DGKGGGRPDMAQGGGNDPSKLE 861

Query: 887 QAIAGVASFLKK 898
            A+AGVA +++K
Sbjct: 862 DALAGVAGWVEK 873


>gi|116878605|ref|YP_357817.2| alanyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123756582|sp|Q3A1W0|SYA_PELCD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114843241|gb|ABA89647.2| alanyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
          Length = 882

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/908 (42%), Positives = 549/908 (60%), Gaps = 42/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR+ FL+FFQ +GH ++PSS+LIP NDPTL+F N+GM  FK++F G+EK  Y   
Sbjct: 1   MTGNEIRSRFLKFFQDHGHTVVPSSALIPHNDPTLLFINAGMNQFKDVFLGREKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI  AW  LT+E  L 
Sbjct: 61  TSAQKCVRAGGKHNDLENVGQTARHHTFFEMLGNFSFGDYFKKEAIDHAWKFLTEEMGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L++TV+ ED+EA+ +W+   G+  +++IR+   DNFWSM +TGPCGPCSEI  DQGE
Sbjct: 121 KDKLWVTVFREDDEAYDIWRDQQGIPEERLIRMGEKDNFWSMGDTGPCGPCSEILIDQGE 180

Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G        + +RY+E+WNLVFMQF +        LPK SIDTGMGLER+  V+Q 
Sbjct: 181 SMSCGDECGIGKCDCDRYLELWNLVFMQFNRDADGTMTPLPKPSIDTGMGLERITAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NYD DL + +I   E+++G +Y     + ++ RVI DH R+++FLIADG+LP+NEGR
Sbjct: 241 VQSNYDCDLLRGIIAHVEELSGKRYGDNAEHDMSMRVIADHSRATAFLIADGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG+ +P++      +   M  AYPE  Q    + + ++ E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGFADPVLYRTATFVLQSMAEAYPEPAQRADYVAKIVKIEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD GL +L   +  L      +L GDVAFKLYDT G PLD+  DIL    +  ID 
Sbjct: 361 FIQTLDNGLRILTEEVERLKAANATVLPGDVAFKLYDTFGFPLDLTADILRGENVT-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQR +AR H  G G      I+  L E+   T F GY  L G          
Sbjct: 420 DGFEACMEEQRQKAREHWKGSGEEAISGIYRQLAEEGARTDFTGYGELTG---------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AI+  G+ V  A +G KVE+V   TPFY E+GGQ GD G   
Sbjct: 470 -------------QSEILAILLDGQPVSSAPAGAKVEIVTAATPFYGESGGQTGDCGTLA 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                + ITD +K    +FVH   +  G L+T  +  LT+D + R+  ++NH+ATHLL  
Sbjct: 517 AGDAEVTITDTKKPLPELFVHVGEIAAGTLQTGETATLTVDRERRQATALNHTATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +TP+ LRFD  H   +++ EL+ +E  VN  I +N  V TR M+
Sbjct: 577 ALVEVLGEHVKQAGSLVTPERLRFDFIHFSAMSAEELERVETLVNCRIRENAGVDTREMD 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A+A GA AL G KY D+VRVV V     G  S  LCGGTH +++G+I L  I+ E+ 
Sbjct: 637 HEQAVAEGATALFGEKYGDKVRVVRV-----GDISMELCGGTHANASGDIGLFKILQETG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG +A   +  Q+  L  LAS +K  +  +  R+ ++ E  ++L+    
Sbjct: 692 IAAGVRRIEAVTGAKALQVVRDQERTLDDLASLIKTDRPQLEARLRKLLERQKELEREIE 751

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN +          +I  ++ +   +  +D K L+ + D ++ ++ SG+++L G 
Sbjct: 752 SLQGKLNADQAGDLLQQATEIDGISVVCGRVDNLDGKALRELADQVRDRLSSGVLIL-GS 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + E KA +L+ VT+DL  R  A  L +  A ++GGGG GGRP +AQ+GG    + D+A+A
Sbjct: 811 AHEGKAGLLVAVTKDLTKRLQAGALVKQLAAMVGGGG-GGRPDLAQAGGSKPEQLDEALA 869

Query: 891 GVASFLKK 898
            V   + +
Sbjct: 870 SVPQRISE 877


>gi|37525217|ref|NP_928561.1| alanyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|41018167|sp|Q7N7A5|SYA_PHOLL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|36784644|emb|CAE13544.1| alanyl-tRNA synthetase (alanine--tRNA ligase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 876

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGKDWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +WK   G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYQTDDEAYDIWKNDVGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF+ LI     VTG   + +N  + RVI DH+RS +FLI DG++
Sbjct: 243 RITAVLQHVNSNYEIDLFRDLITVVANVTGATDDLSNK-SLRVIADHIRSCAFLICDGVV 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG+A  EL + + ++E+ L
Sbjct: 302 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLLEVMGAAGEELKRQQAVVEQIL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   +IL+G+ AF+LYDT+G P+D+  D+   R   
Sbjct: 362 KTEEEQFARTLERGLQLLDDELAKLS-GDILDGETAFRLYDTYGFPVDLTADVCRERN-I 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+E QR RAR       S      +  L +    + F GYD          
Sbjct: 420 SVDEAGFAVAMENQRRRARE------SSGFGTDYNELIKVDERSDFSGYDH--------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   + V AI + GE V +  +G++  V+ D+T FYAE+GGQ+GD+
Sbjct: 465 --------------NEQQATVTAIFRDGESVNQIQAGEEAIVILDKTAFYAESGGQVGDS 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK       H   +E+G L    ++   ID + R  + +NHSATH
Sbjct: 511 GILSNTNCAFCVIDTQKYG-QAIGHIGKLEKGTLSVNHNINAVIDIERRDAIRLNHSATH 569

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HVSQ GS +    LRFD +H + +   +++ +ED VN  + QN PVVT
Sbjct: 570 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNAEVRQNSPVVT 629

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A   GA AL G KY ++VRV+S+     G  S+ LCGGTH + TG+I L  I+
Sbjct: 630 ELMDLETAKVKGAMALFGEKYEEQVRVLSM-----GDFSTELCGGTHANRTGDIGLFRII 684

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEAITG++A   +  Q + L+ +A  +K    ++  +V    +  + L+
Sbjct: 685 AESGTAAGIRRIEAITGKKAVESVHQQVDLLQDIAQLVKSDIHSLSEKVRMTLDRAKALE 744

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ S       ++  V  +   +S  + K L++++D L+ ++ S II+
Sbjct: 745 KELQQLKDQQAAQESSSLASKAKEVKGVKLLVSQLSNTEPKMLRTMVDDLKNQLGSAIIV 804

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S+++ VT+DL  +  A +L    A+ + GG GGGR  MAQ+GG +     
Sbjct: 805 L-STISDDKVSLIVGVTKDLTAKIRAGELISSVAQQI-GGKGGGRSDMAQAGGSDIEALP 862

Query: 887 QAIAGVASFL 896
            A+  V  ++
Sbjct: 863 SALDSVEEWV 872


>gi|188534789|ref|YP_001908586.1| Alanyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|188029831|emb|CAO97712.1| Alanyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 875

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/893 (43%), Positives = 550/893 (61%), Gaps = 56/893 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR +FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQSFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT  + F 
Sbjct: 63  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQEAIAFAWELLTSDQWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFEIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF  LI++  QVTG +    +  + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFAQLIKSVAQVTGAED--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG        L+  L   MG+A  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAEGTFFFKLVAPLIAVMGTAGEDLKRQQSQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL+RGL LLD  L +L   + L+G+  F+LYDT G P+D+  D+   R L 
Sbjct: 361 KTEEEQFAKTLERGLALLDEELENLQ-GDTLDGETVFRLYDTFGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR              + ++     A++F GY  L+       
Sbjct: 420 -IDEAGFERAMEQQRQRARKA------SGFGADYNNVIHIDQASEFKGYQQLQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ + AI   GE  +   +GQ+  +V D TPFYAE+GGQ+GDT
Sbjct: 466 ----------------LNAAITAIFVDGESADTISAGQEGVIVLDSTPFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     ++D  K A     H   +  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELRGNSASFMVSDTHKYA-QAIGHSGKLAAGKLRVGDSVSAQVDEARRERIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +T+ E++ +E+ VN  + +NL + T
Sbjct: 569 LLHAALRQVLGHHVAQKGSLVNDKYLRFDFSHFEAMTAQEIRQVEEIVNAQVRRNLSIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHANRTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q+E+L  +A  +K +  N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAHLVKANNSNLNEKVRALLDHTRALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++          +     +   +S+V+ K L++++D L+ ++ S II+
Sbjct: 744 KQLQQLRDQQAAQESASLSSKAVTLKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           L  +  + K S++  VT+DL DR  A +L    A  + GG GGGRP MAQ+GG
Sbjct: 804 LATVV-DGKVSLITGVTKDLTDRIKAGELVGELALQV-GGKGGGRPDMAQAGG 854


>gi|49475765|ref|YP_033806.1| alanyl-tRNA synthetase [Bartonella henselae str. Houston-1]
 gi|59798532|sp|Q6G2Z4|SYA_BARHE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49238572|emb|CAF27813.1| Alanyl-tRNA synthetase [Bartonella henselae str. Houston-1]
          Length = 887

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/910 (52%), Positives = 641/910 (70%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+TFL++FQ NGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y+ 
Sbjct: 1   MNSVNSIRSTFLDYFQLNGHKIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYKQ 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+W+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFLSWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ + +LW+KISGL  +KI+RI T DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PEDKLLVTVYHNDDVSTELWRKISGLPDEKIVRIATADNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ NK++R  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIWGGPPGSAYEDGDRFIEIWNLVFMQYEQVNKEKRVELPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI  S+++TG+K  G+ I +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 GHDNYDIDLFRALIAVSQEITGVKATGDFIASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  LLP L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMWRLLPVLIHEMGQAYPELVRAESLISETLKLEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L + + LNG++AFKLYDT+G PLD+ QD L  RG   +D+ +FN
Sbjct: 361 KTLERGLGLLSEASTDLKEGDHLNGEIAFKLYDTYGFPLDLTQDALRCRG-ISVDVAAFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q+++ARA+  G G   TE IWFS++++ GAT+F+GY+                  
Sbjct: 420 KAMEGQKAKARANWSGSGETVTEAIWFSVRDQLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+V+ GEIV++  SGQK  +V +QTPFY E+GGQ+GD+G   G   
Sbjct: 462 -----TEKSEGILTALVRDGEIVDDISSGQKAILVVNQTPFYGESGGQIGDSGTISGKNF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKKA+G+F+H   V+ G  R    + LT+D   R+++ +NHSATHLLH AL  
Sbjct: 517 VFEVHDTQKKADGVFIHIGEVKSGQARMSECVELTVDGVRRKKIRVNHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS ++PD LRFD +H K ++  EL+ IED  N+I+ QN  V TR+M  +DA
Sbjct: 577 VLGSHVTQKGSLVSPDRLRFDFSHPKSVSLEELEKIEDLANEIVLQNSEVTTRLMLVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY D VRVVS+             S  LCGGTHV  TG+I L++IVSES
Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGNRLEKGKLKSRWSIELCGGTHVERTGDIGLIHIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG  AR +L  QD ++  +A  LK S  +V  RV  + E+ RKL+   
Sbjct: 697 SVAAGVRRIEALTGTAARLYLSRQDARVHEIADLLKTSATDVEERVRILLEDRRKLEKEL 756

Query: 775 AKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + +  +              I  ++FM  ++  +  ++LK+++D+ +KKI SG++  
Sbjct: 757 NDERKKSVLSGGIVKSDQEDITIINGISFMGRVVKNISPRDLKTLVDSGKKKIGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +G+S++ K S ++ VT+DL  + NAVDL R+ + +LGG GGGGRP MAQSGGP GNKAD+
Sbjct: 817 IGVSEDGKGSAVLGVTDDLTHKLNAVDLVRILSGILGGQGGGGRPDMAQSGGPKGNKADE 876

Query: 888 AIAGVASFLK 897
           A+A + + L+
Sbjct: 877 ALAVLKASLE 886


>gi|315125679|ref|YP_004067682.1| alanyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
 gi|315014193|gb|ADT67531.1| alanyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
          Length = 866

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/903 (43%), Positives = 537/903 (59%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF    H+++PSSSLIP ND TL+F N+GMV FK++F G E   Y   
Sbjct: 4   MTTAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   L 
Sbjct: 64  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTEVVKLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L +T+Y +DEEAF  W    GL  D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 124 KEKLLVTIYHDDEEAFGYWANDIGLPEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 183

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG P    E+G+R+IEIWNLVFMQ+ +Q+      LPK S+DTGMGLER++ +LQ  
Sbjct: 184 HIWGGPPGTPEEDGDRFIEIWNLVFMQYNRQSDGTMEPLPKQSVDTGMGLERISAILQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI A+  VT  +    +  + RV+ DH+RS +FLI+DG++P+NEGRGYV
Sbjct: 244 HSNYEIDLFQGLIAAAASVTNAQDM--DDKSLRVVADHIRSCAFLISDGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL  +MG AYPEL + + +IE+ LR E+E+FGK
Sbjct: 302 LRRIIRRAVRHGNKLGAKGAFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGK 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L+  LS L   +++ GD+ FKLYDT+G P D+  D+   R +  ID   F  
Sbjct: 362 TLERGLAILEESLSDLT-GDVIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHQGFEA 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +  QR  A+        G     +    +    T F GYD                   
Sbjct: 420 CMAVQRKTAQQA------GKFGADYNDQLKSDKHTDFKGYDST----------------- 456

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S  V  I   GE V     GQ+  +V D+TPFYAE+GGQ+GD+G     G  
Sbjct: 457 ------HYSGTVVEIFAGGEAVSLLEDGQQGIIVLDRTPFYAESGGQIGDSGTITVAGGE 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +T+  K        H    +G +     +  TID   R  +  NH+ATH+LH AL  +
Sbjct: 511 FVVTNTTKLGNAF--AHHGTVQGRIGVNDKVDATIDDARRDSIKKNHTATHILHEALRQL 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HVSQ GS + PD LRFD +H + +T  EL+ IE  VND I +N  + T +M  +DA 
Sbjct: 569 LGEHVSQKGSLVQPDRLRFDFSHFEAVTKQELREIERVVNDEIRRNFALNTELMAIDDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY+D VRVV++     G +S  LCGGTHV   G+I L  IVSES I AG+
Sbjct: 629 AKGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A +++  Q+++L  +A+ +K    +V+ +V  + E+ + L+   A+   +
Sbjct: 684 RRIEAVTGAEAIAYVSEQEQQLADVAALVKGDNASVLEKVTALLEKSKGLEKQVAQLNDK 743

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S  +I  V  +   +   +SK L+ ++D L+ KI SG+I L G++   K
Sbjct: 744 LASAAGASLLDSVVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVASGDK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  +  A +L    A  +GG G GGRP MAQ+GG        A+  V ++
Sbjct: 803 VSLIAGVTKDLTGKVKAGELVNHMAGQVGGKG-GGRPDMAQAGGSEPQNLTAALDSVTAW 861

Query: 896 LKK 898
           L +
Sbjct: 862 LTE 864


>gi|217979627|ref|YP_002363774.1| alanyl-tRNA synthetase [Methylocella silvestris BL2]
 gi|217505003|gb|ACK52412.1| alanyl-tRNA synthetase [Methylocella silvestris BL2]
          Length = 895

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/913 (50%), Positives = 600/913 (65%), Gaps = 40/913 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR  FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MNGVNEIRAGFLDYFKKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+T+EF L
Sbjct: 61  AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY  D+EAF LWKKI+G    KIIRI ++DNFW+M +TGPCGPCSEIF+DQG
Sbjct: 121 PKDRLLVTVYHTDDEAFDLWKKIAGFPDSKIIRIASSDNFWAMGDTGPCGPCSEIFYDQG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG P    E+G+R++E WNLVFMQFEQ    ER  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 ERLKGGPPGSPDEDGDRFLEFWNLVFMQFEQLGPGERIDLPRPSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NYDIDL + LI A    TG+  +G    +HRVI DHLR+ +FLIADG+ P+NEGRGY
Sbjct: 241 VTSNYDIDLMRALIVAIAAATGVDPDGPQKASHRVIADHLRACAFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LL   EPLM  L+P L  EMG AYPELI+A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLSAREPLMWRLVPVLSREMGQAYPELIRAESLIVETLRLEEARFI 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL +LD  +  L +   L G VAFKLYDT+G PLD+ QD L AR L  +D+  FN
Sbjct: 361 DTLARGLSILDEAVRDLPEGAPLPGQVAFKLYDTYGFPLDLTQDALRARSL-AVDVDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ AR    G G   TE +WF++K++ GAT F+GY+                  
Sbjct: 420 TAMERQRADARRAWAGSGEAATETLWFAIKDEAGATDFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G+ VE    G+   ++ +QTPFYAE+GGQ+GDTG     G+
Sbjct: 462 -----AEQAEGVVAALVKDGKPVERLNKGETGAIILNQTPFYAESGGQVGDTGVMSAAGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD +KK   +FVH  IVE G +   ++L L++D+  R  +  NHSATHLLH +L  
Sbjct: 517 RFRVTDTKKKLGDLFVHEGIVEEGEITPGLALELSVDHARRSAIRANHSATHLLHESLRL 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +  D LRFD TH KPI+  EL  +ED  N  +  N PVVTR+M  ++A
Sbjct: 577 VLGDHVAQKGSLVADDRLRFDFTHLKPISPEELTRVEDIANRAVTDNAPVVTRLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGGTHVSSTGEIMLLY 709
           IASGA AL G KY D VRVV++                  S  LCGGTHV+ TG+I L+ 
Sbjct: 637 IASGARALFGEKYGDEVRVVTMGYAQDREDSGDGGANRAFSVELCGGTHVARTGDIGLIA 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SES++ AG+RRIEA T   AR HL  + +KL+ +A  LK S+ +   R+  + EE RK
Sbjct: 697 ITSESAVAAGVRRIEAKTAAAARRHLNARSDKLEHIAVLLKSSEDDAEKRLAALLEERRK 756

Query: 770 LQLIHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L    A  + +L             +I  V F    +S VD K+LKS+ D  ++ + SG+
Sbjct: 757 LDRELADARKKLAMGGGEKAAAEAQEIGGVKFFGRAVSGVDLKDLKSLADEAKQTVGSGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + + G+  + KA V++ VT DL++RF++V L RL+A  LGG GGGGR  MAQ+GGPNG  
Sbjct: 817 VAIAGVDSDGKAGVVVGVTADLVERFDSVALVRLAATELGGKGGGGRRDMAQAGGPNGAG 876

Query: 885 ADQAIAGVASFLK 897
            D A+A +A+ L+
Sbjct: 877 VDAALAAIANGLR 889


>gi|168262064|ref|ZP_02684037.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|200387922|ref|ZP_03214534.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199605020|gb|EDZ03565.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205349249|gb|EDZ35880.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|322614354|gb|EFY11285.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322621581|gb|EFY18434.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624442|gb|EFY21275.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322628773|gb|EFY25556.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633500|gb|EFY30242.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635924|gb|EFY32632.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639632|gb|EFY36317.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646815|gb|EFY43318.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650583|gb|EFY46988.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654805|gb|EFY51124.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659025|gb|EFY55278.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664408|gb|EFY60602.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668343|gb|EFY64500.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673677|gb|EFY69778.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322681432|gb|EFY77464.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322683834|gb|EFY79844.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193777|gb|EFZ78980.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200247|gb|EFZ85329.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203250|gb|EFZ88279.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323205503|gb|EFZ90468.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212791|gb|EFZ97602.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216317|gb|EGA01044.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221065|gb|EGA05496.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226886|gb|EGA11068.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230830|gb|EGA14948.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234819|gb|EGA18905.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323238858|gb|EGA22908.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241558|gb|EGA25589.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248295|gb|EGA32231.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251121|gb|EGA34994.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255840|gb|EGA39588.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263139|gb|EGA46677.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264356|gb|EGA47862.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271183|gb|EGA54611.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 876

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|168230882|ref|ZP_02655940.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194471872|ref|ZP_03077856.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194458236|gb|EDX47075.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205334599|gb|EDZ21363.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 876

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/895 (44%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|254474615|ref|ZP_05088001.1| alanyl-tRNA synthetase [Ruegeria sp. R11]
 gi|214028858|gb|EEB69693.1| alanyl-tRNA synthetase [Ruegeria sp. R11]
          Length = 883

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/908 (48%), Positives = 584/908 (64%), Gaps = 39/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEVVSSSPLVPRNDPTLMFTNSGMVQFKNLFTGLETRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L  TVY  D+EAF++WKK  G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLTTVYHTDDEAFEIWKK-VGVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGSMKALDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS  VT +   G+  V+HRVI DHLRS+SFLI+DG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLISDGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL +A+ +IEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQSMIEETLLQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L +   L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELADLDEGAPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + ++ G T F+GY+                  
Sbjct: 419 SAMAEQKAKARAAWAGSGESADSTIWFDVADQAGTTDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V  G  V EA +G  V+VV +QTPFYAE+GGQ+GD+G    DG 
Sbjct: 461 -----TEAAEGQVMALVVDGAQVSEAGAGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++++D  KKA G+F+H   VE G++    +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 516 VVRVSDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHARRSAIRSNHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS    D LRFD +H+K ++  E++++E  VN  I QN  V TRIM  +DA
Sbjct: 575 VLGEHVAQRGSLNADDRLRFDFSHNKALSLDEIRTVEQQVNHFIRQNSTVETRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+        +DG   S  LCGGTHV  TG+I    ++ +
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGKAPTGKGQDGQTWSLELCGGTHVKQTGDIGTFVVLGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A  +L GQD  L   A  LK   G+V  R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAEAFQYLTGQDNLLAQAALELKAQPGDVPERIKALLDERKALQNE 754

Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++ K Q+ +       +    I    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 755 VSQLKQQVAMGGGAGGGVETKDIGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             +   K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + A  A
Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGAQDA 873

Query: 889 IAGVASFL 896
           +    +FL
Sbjct: 874 LKAAEAFL 881


>gi|78485931|ref|YP_391856.1| alanyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|123555227|sp|Q31F91|SYA_THICR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78364217|gb|ABB42182.1| alanyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
          Length = 864

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/901 (42%), Positives = 541/901 (60%), Gaps = 47/901 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF K GH  + SS ++P NDPTL+FTN+GMV FK  F GQE   Y+  
Sbjct: 1   MTSAELRKAFLDFFVKQGHTAVHSSPVVPGNDPTLLFTNAGMVQFKETFLGQETREYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW  LT+E  L 
Sbjct: 61  TSVQRCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWTFLTEELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+ITV++ED EA  +W K  G+SA++  R    DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 EEKLWITVFEEDREAEDIWLKEMGVSAERFSRCGAKDNFWSMGDTGPCGPCSEIFYDHGA 180

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG P    E+G+RYIEIWNLVFMQF++        LPK S+DTGMGLER+A V+Q +
Sbjct: 181 DVAGGPPGSPDEDGDRYIEIWNLVFMQFDRSEDGTLTPLPKPSVDTGMGLERLAAVMQNQ 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            NNYDIDLF+ +++ + ++TG K   N+  + RVI DH+RS +F++ DG+LP+NEGRGYV
Sbjct: 241 HNNYDIDLFQAIVKKASELTGEKDLANS--SLRVIADHIRSCAFMVVDGVLPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG T+     L+P L  +MG AYPEL++ +  +E  L+ E+ERF +
Sbjct: 299 LRRIIRRAIRHGYKLGQTDIFFYQLVPTLVEQMGEAYPELVKEQANVERALKLEEERFAE 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+ G+ +L+  ++ L    +++G  AFKLYDT+G PLD+  D+   R L+ +D   F Q
Sbjct: 359 TLENGMKILEEDIAQLS-GSVISGSTAFKLYDTYGFPLDLTADVARERNLS-VDEAGFEQ 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E QR+RAR+ S        +  +       G+T FIGY+                   
Sbjct: 417 EMEAQRARARSASNFGAQSKNKVDY------TGSTHFIGYEQDE---------------- 454

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + + AI      VE+A  GQ+  V+ +QTPFYAE+GGQ+GD G        
Sbjct: 455 -------AEAEIAAIFVDNVSVEKASEGQEAIVILNQTPFYAESGGQVGDQGSLTEGMNS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
               D  +K    F+H   V  G +    +++  ID + RR    NHSATHLLH AL T+
Sbjct: 508 F-HVDNCQKQGAAFLHIGKVTAGSISVGQTILAHIDVKARRASERNHSATHLLHAALRTV 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+HV Q GS + P+ LRFD +H +PI++ +L  IE  VN  I  N  V+   M+ E A 
Sbjct: 567 LGTHVGQKGSLVQPERLRFDFSHFEPISAEQLLEIEQLVNHNIMLNAQVMMEEMDIEAAK 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY D VRVV +     G  S  LCGGTHV+ TGEI    I SES I +G+
Sbjct: 627 AKGAMALFGEKYGDVVRVVDM-----GDFSIELCGGTHVNWTGEIGPFRITSESGIASGV 681

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A   +   ++ L ++A+ LK  +  V  +V ++  E ++L+    + + +
Sbjct: 682 RRIEAVTGEAAWQTIYDMEKSLLNIAANLKTDKPQVESKVAQLVTEQKELEKQLKQLQSK 741

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S  ++  VN ++  +   D   L+  +D L+ K++   I+L  +  + K
Sbjct: 742 LASSQGDDLASSVTEVNGVNVLAAELEGADVNTLRETLDKLRDKLEPAAIVLAAVDGD-K 800

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  V++ +     A +L    A+ + GG GGGRP MAQ+GG + +K  +A+A V  +
Sbjct: 801 VSLVAGVSKSITGNVKAGELVNHVAQQV-GGKGGGRPDMAQAGGKDPSKLKEALASVKEW 859

Query: 896 L 896
           +
Sbjct: 860 V 860


>gi|16761603|ref|NP_457220.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29143087|ref|NP_806429.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213052376|ref|ZP_03345254.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213426121|ref|ZP_03358871.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213579902|ref|ZP_03361728.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213622611|ref|ZP_03375394.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
 gi|213852307|ref|ZP_03381839.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|289824467|ref|ZP_06544043.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|20532252|sp|Q8Z4D5|SYA_SALTI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|25293091|pir||AF0843 alanine-tRNA ligase (EC 6.1.1.7) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503904|emb|CAD05933.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29138720|gb|AAO70289.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 876

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|168820492|ref|ZP_02832492.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342835|gb|EDZ29599.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320087230|emb|CBY96995.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 876

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|238909593|ref|ZP_04653430.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 876

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|330863734|emb|CBX73834.1| alanyl-tRNA synthetase [Yersinia enterocolitica W22703]
          Length = 875

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/910 (42%), Positives = 554/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDIGIPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  +VTG      +  + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + +L     A+QF GYD +        
Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNNLIRVDSASQFSGYDHV-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GDT
Sbjct: 465 ---------------HQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK       H   +  G LR   S+   ID   R ++ +NHSATH
Sbjct: 510 GELKNATATFAVADTQKYG-QAIGHLGQLAHGTLRVNHSIDAQIDAARRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVAHLVKGDTHNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +        +  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  I+ + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG N     
Sbjct: 804 LATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTNVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 SALASVEAWV 871


>gi|307546333|ref|YP_003898812.1| alanyl-tRNA synthetase [Halomonas elongata DSM 2581]
 gi|307218357|emb|CBV43627.1| alanyl-tRNA synthetase [Halomonas elongata DSM 2581]
          Length = 868

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/904 (42%), Positives = 536/904 (59%), Gaps = 47/904 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F++ GH ++PSSSL+P NDPTL+FTN+GMVPFK++F G++   Y   
Sbjct: 1   MKSADIRQAFLSYFEERGHSIVPSSSLVPDNDPTLLFTNAGMVPFKDVFLGRDPRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L 
Sbjct: 61  TSAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIHFAWNFLTEVLGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L++TV+  D+EA ++WK   G+  ++  R+   DNFW M +TGPCGP SE+FFD G 
Sbjct: 121 REKLWVTVHVSDDEAERIWKDEVGIDPERFSRL-DEDNFWQMGDTGPCGPSSEVFFDHGP 179

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS  E+G+RYIE+WNLVFMQ+++        LPK SIDTGMGLER+A V+Q  
Sbjct: 180 EVWGGPPGSPEEDGDRYIEVWNLVFMQYDRDAAGNMNPLPKPSIDTGMGLERIAAVMQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF++L+ A+ + TG      +  + RVI DH+RS +FL+ADG+LP+NEGRGYV
Sbjct: 240 HSNYEIDLFQNLLAAAAEATGHDD--TSAPSLRVIADHIRSCAFLVADGVLPSNEGRGYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL  EMG AYPEL +A+  IE  L  E+E+F +
Sbjct: 298 LRRIIRRAVRHGHKLGAQGCFFHKLVAALDAEMGEAYPELREARDQIERVLLKEEEQFAR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+ G+ LL   L  L   + L G+  FKLYDT+G P D+  D+   RG   +D   F +
Sbjct: 358 TLEHGMGLLGEALDALE-GDTLPGETVFKLYDTYGFPFDLTADVCRERG-VSLDEAGFER 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            LE QR RARA S           + +  E  G T F GYD L                 
Sbjct: 416 ELEAQRERARAASQFG------VDYGAALELEGQTDFTGYDRLEDR-------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    + V A+V + G  +    + Q+  VV D+TPFY E+GGQ+GDTG    +G 
Sbjct: 456 ---------ATVVALVDEQGNALARLEAEQRGVVVLDRTPFYGESGGQVGDTGYLELEGG 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  + D QK+A    +H   +  G L    S+   +D   R     NHSATHLLH AL  
Sbjct: 507 RFLVEDTQKQAGH-HLHQGRLLEGELEVGASVTPRVDPSLRAATVRNHSATHLLHQALRM 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +TP+ LRFD +H +P+T+ +L  +E  VN+ +  N P     M  ++A
Sbjct: 566 VLGDHVQQKGSLVTPERLRFDFSHFEPMTAEQLAEVERLVNEQVLANAPTRIEHMTLDEA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GAAAL   KY D VRV+++  +D    S  LCGGTHV+ +G+I   +IV+E+ I +G
Sbjct: 626 KEKGAAALFEAKYADSVRVLTIGADD---FSIELCGGTHVARSGDIGCCHIVAEAGIASG 682

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEAITG+ A ++   Q+ ++  +   LK     V  RV  + E  R+L+    + K 
Sbjct: 683 VRRIEAITGEGALAYFREQEARVARIGERLKAKPEQVEERVTSLVERNRELEKELERLKA 742

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           +L     S      H++  +  ++  +  V  KEL+ ++D L+ K+ SG+++L    ++ 
Sbjct: 743 KLASAAGSDMLGEAHEVKGIKVLAKRLEGVSGKELRGLLDQLKNKLGSGVVVLGVGDEQA 802

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K S++  VT+DL  R  A +L    A  + GG GGGRP MAQ+GG +      A+  V 
Sbjct: 803 GKVSLIAGVTDDLTGRIKAGELVNHVASQV-GGKGGGRPDMAQAGGSDVPALPGALDSVP 861

Query: 894 SFLK 897
            +++
Sbjct: 862 VWVE 865


>gi|167836924|ref|ZP_02463807.1| alanyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 854

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/894 (42%), Positives = 533/894 (59%), Gaps = 55/894 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTAVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPQEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGPFFHRLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADLEAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFRATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G+L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDVVRGEIDAGRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +ED VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEDIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L             ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG 
Sbjct: 803 LAAVD-GGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGT 854


>gi|85374371|ref|YP_458433.1| alanyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
 gi|122544241|sp|Q2N9K5|SYA_ERYLH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|84787454|gb|ABC63636.1| AlaS, alanyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
          Length = 887

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 438/907 (48%), Positives = 589/907 (64%), Gaps = 36/907 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR +FL++F   GH  + S+ L+P NDPTLMF N+GMVPFKN+FTG E P    
Sbjct: 1   MQSTNDIRRSFLDYFTGAGHAEIASAPLVPYNDPTLMFVNAGMVPFKNVFTGLETPPAPT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI+ AW LLT+E+ +
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIEHAWTLLTREWGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL  TVY  D+EA+  W+KI+GL  ++IIRI T DNFW+M + GPCGPCSEIFFD G
Sbjct: 121 DAARLTATVYHTDDEAYDFWRKIAGLPEERIIRIATKDNFWAMGDDGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++E+WNLVFMQ EQ   +    LP  +IDTGMGLER+A V+Q 
Sbjct: 181 DHIFGGPPGSPEEDGDRFVEVWNLVFMQHEQTGGEITGDLPNKNIDTGMGLERIAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI ASE +TG+K EG+   +HRVI DHLRS+SFLIADG+LP++EGRGY
Sbjct: 241 VHDNYDTDTFKELIGASEGLTGVKAEGDQAASHRVIADHLRSTSFLIADGVLPSSEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG +EPLM  L+PAL TEMG AYPEL + + LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGASEPLMHRLVPALVTEMGQAYPELTRGQALIEETLEREEARFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LLD     + + + L+G+ AFKLYDT+G P D+ +D L  RG   +D   F 
Sbjct: 361 QTLEKGLRLLDDATGDMSEGDTLDGETAFKLYDTYGFPYDLTEDALRPRG-IAVDETGFA 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+  ARA   G G     ++WF + E+ GAT+F GY    G              
Sbjct: 420 SAMQRQKDAARAAWKGSGQAADSEVWFDIAEREGATEFTGYTSTSG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V+ G+ V+ A +G +V ++ +QTPFY E+GGQ GD G       
Sbjct: 466 ---------EGRVVALVKNGKEVDSASAGDEVVILTNQTPFYGESGGQTGDAGTMSTPDG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++++TD  K    +  H A ++ G +    +L L +D   R ++  NHSATHL+H AL 
Sbjct: 517 VKVEVTDTGKPLGRLHTHQAKIQSGTVLKGDTLHLDVDVDRRDRVRANHSATHLVHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS +  D LRFD +H KP++  ++ +IE  VN+ I  N  V TR+M+ +D
Sbjct: 577 NRLGEHVTQKGSLVAEDRLRFDFSHPKPLSEDDIAAIEAEVNEEIRANETVTTRLMSPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+ +GA AL G KY + VRV+S+    ++G  +S  LCGGTHV +TG+I L  I+SES++
Sbjct: 637 AVDAGALALFGEKYGEEVRVLSMGRRSKEGRNYSVELCGGTHVRATGDIQLFRIISESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA+TG  AR  L+ ++E LKS AS L+ +   V  RV  + +E + L+   A 
Sbjct: 697 SSGVRRIEALTGDAARQWLVRREEALKSAASALRTNPEEVAERVAALLDERKALEKELAD 756

Query: 777 RKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + QL        V       I DV F   +I+ ++ K+L+ ++D  ++++ SGI  +  
Sbjct: 757 ARKQLALGGGGSQVAQSQDETIGDVTFSGQVINGLNPKDLRGLLDEAKQRMGSGIAAICA 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  E KA+    VT+DL DR+NAVDL R   +VLGG GGGGRP MAQ GGP+G KA+ A+
Sbjct: 817 V-NEGKAAFAAAVTDDLTDRYNAVDLVRAGVEVLGGKGGGGRPDMAQGGGPDGLKAEAAL 875

Query: 890 AGVASFL 896
             V   L
Sbjct: 876 NAVRERL 882


>gi|319407395|emb|CBI81046.1| Alanyl-tRNA synthetase [Bartonella sp. 1-1C]
          Length = 887

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/910 (52%), Positives = 629/910 (69%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+ FL++F +NGHE+L SS LIP NDPTLMFTN+GMV FKN+FTG E+  Y+ 
Sbjct: 1   MNSVNSIRSAFLDYFHRNGHEILSSSPLIPRNDPTLMFTNAGMVQFKNVFTGLEQYPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            Q +L +TVY  D  A +LW+KISGL  +KIIRI TNDNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 SQDKLLVTVYHTDNIAAELWRKISGLPNEKIIRIATNDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS +E+G+R+IEIWNLVFMQ+EQ NK+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIFGGPPGSANEDGDRFIEIWNLVFMQYEQVNKEERTELPCPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF  LI  S+++TG++  G  + +HRVI DHLRSS+FLI+DG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFCKLIHTSQEITGIEATGEFVASHRVIADHLRSSAFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  E LM  LLP L  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMEKLLPVLVREMGQAYPELVRAESLISEILKLEETRFH 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+     L + + L+G+VAFKLYDT+G PLD+ QD L  RG   +DI +F 
Sbjct: 361 KTLERGLSLLNEASIDLKEGDHLDGEVAFKLYDTYGFPLDLTQDALRRRG-ISVDIDAFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++  RA+  G G+  TE IWFS+++K G T+F+GY+                  
Sbjct: 420 KAMELQKAENRANWSGSGASITETIWFSIRDKVGITEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ A+V  GEIV+   SGQ   +V +QTPFYAE+GGQ+GD+G   G+  
Sbjct: 462 -----AEKAEGVITALVCDGEIVDHISSGQDAVLVVNQTPFYAESGGQVGDSGIISGESF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q+K +GIF+H   V+ G  +    + L +D + RR++  NHSATHLLH AL  
Sbjct: 517 VFEVRDTQRKGDGIFIHIGEVKSGRAKISDCVELIVDSERRRKIRANHSATHLLHEALRC 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS ++P  LRFD +H KPI+S ELK +ED  NDI+ QN  V+TR+M  +DA
Sbjct: 577 ILGPHVAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSKVITRLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+             S  LCGGTHV  TG+I L++IV+ES
Sbjct: 637 ILGGAMALFGEKYGDEVRVVSMGERCEPIELKKHWSIELCGGTHVQRTGDIGLIHIVAES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ +G+RRIEA+TG  AR +L  QD+++  +ASFLK S  N+  R+  + ++ RK +   
Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEMASFLKTSPANLEERIRNLLDDRRKFEKEL 756

Query: 775 AKRKL-------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              +         L  +      I  ++FM  ++  +  ++LK+++D+ +K+I+SG++  
Sbjct: 757 NNTRKNVFLNGGALQGKKEEITIINGISFMGRVLRNIAVRDLKTLVDSGKKQIKSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + IS++ K S ++ VT+DL++  NAVDL R+ + VLGG GGGGRP MAQ+GG  G+KAD+
Sbjct: 817 ISISEDGKGSAVVGVTDDLINILNAVDLVRVVSTVLGGQGGGGRPDMAQAGGSKGDKADE 876

Query: 888 AIAGVASFLK 897
           AI  + +FLK
Sbjct: 877 AITALKAFLK 886


>gi|212634216|ref|YP_002310741.1| alanyl-tRNA synthetase [Shewanella piezotolerans WP3]
 gi|212555700|gb|ACJ28154.1| Alanyl-tRNA synthetase [Shewanella piezotolerans WP3]
          Length = 874

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/907 (41%), Positives = 548/907 (60%), Gaps = 54/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGEDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LTKE  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAINFAWNFLTKELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D EA+ +W K  G++ + IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYETDNEAYDIWSKKVGVAPENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG P    E+G+R+IEIWN+VFMQ+ +Q+      LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSDGAMNPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILGVTD--LENKSLRVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      L+P L   MG A   L+  + ++E++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATSSFFYKLVPTLIEVMGDAAKGLVATQAIVEKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L   ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDNALSGLK-GDVLDGETAFKLYDTYGFPVDLTADVCRERDIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G  E  +    +    + F+GY  L           
Sbjct: 420 EAGFKTAMAEQRSRAQAA------GQFETDYNEGLKIDEQSGFVGYQEL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI + GE V+    G +  +V + TPFY E+GGQ GD G  
Sbjct: 463 ------------NNQATVTAIYKAGEPVDALNVGDEAVIVLNNTPFYGESGGQCGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + DGI  Q+ D QK       H   +  G +    S+   +D + R +  +NHS THLLH
Sbjct: 511 LADGIEYQVADTQKYG-QAIGHIGKLAEGSIVVGQSIATNVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + + ++ELK +E+ VN  I +N  +   +M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKASELKEVEELVNTQIRRNHELKAEVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A   GA AL G KY+  VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DIEQAKEKGAMALFGEKYDAEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q   L+  A+ LK    +V+ +++   ++ + L+   
Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAKQQASLEEAAALLKGDSASVITKLKAQLDKSKALEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L             ++  +  +   +  VD+  L+ + D L++K++SGI++L G
Sbjct: 745 AQLKDKLAAATSADLAGEAVEVNGIKVLVKQLEGVDAGSLRGLQDELKQKLKSGIVVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ + K +++  VT+DL  +  A +L    A  + GG GGGRP MAQ+GG        A+
Sbjct: 804 IAGDAKVNLIAGVTKDLTGKVKAGELVASIAVQV-GGKGGGRPDMAQAGGSQPENLKGAL 862

Query: 890 AGVASFL 896
             V  ++
Sbjct: 863 DSVIPWI 869


>gi|27262306|gb|AAN87434.1| Alanyl-tRNA synthetase [Heliobacillus mobilis]
          Length = 883

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/907 (43%), Positives = 555/907 (61%), Gaps = 43/907 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FLE+F++ GH ++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y   T
Sbjct: 4   TGNRVRQLFLEYFEQKGHTVVASSSLVPHNDPTLLFTNAGMNQFKDLFLGYEKRPYVRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L +
Sbjct: 64  TSQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAIRFAWEFLTDVVKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y +DEEA +LWKK  G+  ++IIR+   DNFWSM +TGPCGPCSEI  D+GE 
Sbjct: 124 DKLYATIYLDDEEAHELWKKEIGVPEERIIRLGEKDNFWSMGDTGPCGPCSEILIDRGEH 183

Query: 183 IPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +  G    +    + +R++EIWNLVFMQF +  +     LPK SIDTGMGLER+ +VLQ+
Sbjct: 184 LRCGAEECAIGKCDCDRWLEIWNLVFMQFNRDEQGVMTPLPKPSIDTGMGLERITSVLQD 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRG 298
             +NYD DL + LI   EQ++G +Y  ++     RVI DH+RS +FLI DG+LP NEGRG
Sbjct: 244 VPSNYDTDLLRPLITYVEQLSGKEYHRDDRGFPFRVIADHIRSCTFLITDGVLPGNEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + +++G  +P M  ++P +   MG AYPE+ + +  +++ ++ E+ERF
Sbjct: 304 YVLRRILRRAVRFGKVIGIEKPFMYQIVPVVVELMGEAYPEIKEKQDFVQKVIKIEEERF 363

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL  G+ +   +++ + +D   +L G  AF LYDT+G PLD+ +DI    GL  +D  
Sbjct: 364 HETLHEGMRIAADIVAKVKEDGGGVLPGRQAFTLYDTYGFPLDLAEDIAEENGLT-VDKD 422

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+E QR RARA       G   +IW  L  K G T F GY  L G           
Sbjct: 423 GFAAAMEAQRERARAARQDTSYGAGMEIWADLLNKLGPTAFTGYGQLSG----------- 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S + AIV   E V EA  G  V+VV  +TPFYAE+GGQ+GDTG    
Sbjct: 472 ------------QSQLLAIVSGPEQVAEASVGTAVQVVLAETPFYAESGGQIGDTGYIRT 519

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           D   ++I D +K A G+FVH  +VE G  +   ++   +    R+ ++ +HSATHLLH A
Sbjct: 520 DKAIIRIDDTKKMAGGLFVHVGVVEEGTFQAGETVTAEVTGLRRQAIARHHSATHLLHRA 579

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +T D LRFD +H  P+T  E K IE++VN  + ++LPV       
Sbjct: 580 LKDVLGEHVNQAGSLVTGDRLRFDFSHFTPLTREEWKQIEESVNRQVFRSLPVEVFEATL 639

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A GA AL G KY D VRVV +     G +S  LCGGTH+ +T +I L  +VSE  I
Sbjct: 640 DEAKAMGATALFGEKYGDHVRVVRM-----GDYSMELCGGTHLQNTAQIGLFKLVSEGGI 694

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RR+EA+TG+ A  +L  Q+E ++ LA  LKV   +V  RVE +  + R+ +    +
Sbjct: 695 GAGLRRLEAVTGEAALDYLNEQEEIVRGLAEKLKVPPVDVAHRVETLQSQVREKEREIEQ 754

Query: 777 RKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              +L    +        +I+ V  ++  +   D   L+ + D L++K+ SG+++L  + 
Sbjct: 755 LLARLAKYQVEDLLANREEISGVQVLAAKVQAPDMDALRQMSDLLKEKMGSGVLILGSVV 814

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            + K +++   T+D++ R  +A +L + +AK  GGGG GGRP MAQ+GG + +K  +A+ 
Sbjct: 815 GD-KVNLVASATKDIVGRGVHAGNLIKEAAKTCGGGG-GGRPDMAQAGGKDPSKLAEALD 872

Query: 891 GVASFLK 897
                LK
Sbjct: 873 AAKKLLK 879


>gi|318604467|emb|CBY25965.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 875

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/910 (42%), Positives = 554/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDIGIPCERIIRIGDNKGSAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  +VTG      +  + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + +L     A+QF GYD +        
Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNNLIRVDSASQFSGYDHV-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GDT
Sbjct: 465 ---------------HQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK       H   +  G LR   S+   ID   R ++ +NHSATH
Sbjct: 510 GELKNATATFAVADTQKYG-QAIGHLGQLAHGTLRVNHSIDAQIDVARRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVAHLVKGDTHNLADKVRAMLDRSKMLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +        +  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  I+ + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG N     
Sbjct: 804 LATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTNVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 SALASVEAWV 871


>gi|159044191|ref|YP_001532985.1| alanyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|205830080|sp|A8LL20|SYA_DINSH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157911951|gb|ABV93384.1| alanyl-tRNA synthase [Dinoroseobacter shibae DFL 12]
          Length = 887

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/895 (49%), Positives = 573/895 (64%), Gaps = 41/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL FF  +GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MPSLNEIRSTFLNFFGGHGHEIVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRDYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AWDL+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWDLITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EA ++WKK +GLS D+IIRI TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLVTVYHTDDEAAEIWKKHAGLSDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ     R  LPK SIDTGMGLER+  +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQFEDGTREPLPKPSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   T +   G+  V+HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 SHDNYDTDLFKTLIEASAHATSVDPYGDKNVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG A+PEL +A+ LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMYRLVPALVGQMGQAFPELGRAQALIEETLMLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  ++ + +   L G+ AFKLYDT+G PLD+ QD L  +G A      F+
Sbjct: 361 QTLDRGLKLLDEAVADVPEGGALPGETAFKLYDTYGFPLDLTQDALREKGRAVE-TEGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q+++ARA   G G    E IWF L E +GAT+F+GYD                  
Sbjct: 420 AAMADQKAKARAAWAGSGETADESIWFDLAETHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G  V +   G+   +V +QTPFYAE+GGQ+GD+G  +    
Sbjct: 462 -----TEVAEGQVLALVKDGAQVAQLAEGETGWMVLNQTPFYAESGGQVGDSGGYLKSNG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              I D QK+  G+F H    +   L+    L + +D   R  +  NHSATHLLH AL  
Sbjct: 517 SGAIHDTQKR-NGLFAHKVTPKAQPLKAGDVLEMRVDPARRTAIRANHSATHLLHEALRQ 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS    D LRFD +HSK +T  EL+ +E  VN  I QN PV TRIM  + A
Sbjct: 576 ALGAHVAQRGSLNAADRLRFDFSHSKALTLEELQKVEAEVNAYIRQNSPVETRIMTPDAA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+           G  +S  LCGGTHV  TG+I +   V 
Sbjct: 636 RDLGAQALFGEKYGDEVRVVSMGRQSGSGKGVSGETYSLELCGGTHVKQTGDIGVFVTVG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E++  +G+RRIEA+TG+ A ++L  QD +L  +A+ LK    +V  RV  + +E + LQ 
Sbjct: 696 ETASSSGVRRIEALTGEDAFAYLSAQDYRLAEVAASLKAQAADVPERVRSLLDERKALQN 755

Query: 773 IHAKRKLQLNV-------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             A+ + +L +              +A V F++  +S V  ++L S++D  + ++ SG I
Sbjct: 756 EVAQLRRELAMAGGGQGTAAPEAEAVAGVPFLAQSLSGVSGRDLPSLIDEHKARLGSGAI 815

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +L+      KA+V   VT DL DR +AVDL + +   LGG GGGGRP MAQ GG 
Sbjct: 816 LLIA-DTGGKAAVAAGVTADLTDRLSAVDLVKAAVAELGGKGGGGRPDMAQGGGK 869


>gi|16766133|ref|NP_461748.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|168245264|ref|ZP_02670196.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168464053|ref|ZP_02697970.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194443356|ref|YP_002042068.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450006|ref|YP_002046787.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197264802|ref|ZP_03164876.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|20532254|sp|Q8ZMK6|SYA_SALTY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|16421372|gb|AAL21707.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194402019|gb|ACF62241.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408310|gb|ACF68529.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195633250|gb|EDX51664.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197243057|gb|EDY25677.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205335995|gb|EDZ22759.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|261247963|emb|CBG25796.1| AlaRS [Salmonella enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994942|gb|ACY89827.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159387|emb|CBW18905.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913845|dbj|BAJ37819.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223380|gb|EFX48446.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323131178|gb|ADX18608.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 876

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|119383350|ref|YP_914406.1| alanyl-tRNA synthetase [Paracoccus denitrificans PD1222]
 gi|205830170|sp|A1AZL6|SYA_PARDP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119373117|gb|ABL68710.1| alanyl-tRNA synthetase [Paracoccus denitrificans PD1222]
          Length = 885

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/909 (49%), Positives = 589/909 (64%), Gaps = 37/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ +R+TFL +F++NGH ++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y+ 
Sbjct: 1   MPSLNDVRSTFLNYFERNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLTK+F +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDGAIPFAWELLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  +WKK++GLS D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 PKDKLLVTVYHTDDEAADIWKKVAGLSDDRIIRIPTSDNFWQMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R+IEIWNLVFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 181 EQIWGGPPGSADEDGDRFIEIWNLVFMQNEQFEDGTMRALDMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRGLIEASAHATSADPDGPGKVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  EMG+AYPEL +A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVREMGAAYPELGRAQALIEETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L +   L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 QTLDRGLRLLDDELAKLPEGANLPGEAAFKLYDTYGFPLDLTQDALREKGR-AVDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + E++GAT+F+GYD                  
Sbjct: 420 SAMAEQKAKARAAWAGSGETKDAAIWFDIAEEHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+VQ G  VEEA  GQ+V++V +QTPFY EAGGQ+GDTG    +  
Sbjct: 462 -----TEISEGQVLALVQDGAAVEEAGEGQQVQIVVNQTPFYGEAGGQVGDTGLIKTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD +K    +F+H A V  G ++      L++D+  R  +  NHSATHLLH AL  
Sbjct: 517 AARVTDTKKTGG-VFIHIAEVTLGTIQRGQGAQLSVDHDRRSAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H+K +T  EL  +E  VND I QN PV TRIM  +DA
Sbjct: 576 ALGEHVAQRGSLNAPDRLRFDFSHAKAMTPEELAQVEREVNDFIRQNSPVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+           G  +S  LCGGTHV+ TG+I +  + S
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGELPGSGKGTGGQTYSLELCGGTHVARTGDIGMFALTS 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E++  AGIRRIEA+TGQ A   L   D +L  +A  +K   G+VV +V  + +E + L  
Sbjct: 696 ETASAAGIRRIEALTGQAAMDELRRVDGELNEIAGIVKAQAGDVVSKVRALADERKALAN 755

Query: 773 IHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+ K QL +    +    +I  +  ++  +  V  KEL  ++D ++ ++ SG ++++ 
Sbjct: 756 EVAQLKRQLAMGGGSEDKPREINGIKLIARRVEGVSGKELGPLVDEMKSRLGSGAVVVLA 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + KA+V   VT DL  R +AV+L + +   LGG GGGGRP  AQ G P+   AD AI
Sbjct: 816 -EADGKATVAAGVTPDLTGRISAVELVQTATAALGGKGGGGRPDRAQGGAPSLAAADSAI 874

Query: 890 AGVASFLKK 898
           + V + + +
Sbjct: 875 SAVETLIGE 883


>gi|120602949|ref|YP_967349.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|205830078|sp|A1VEQ6|SYA_DESVV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120563178|gb|ABM28922.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
          Length = 879

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/908 (42%), Positives = 534/908 (58%), Gaps = 43/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLEF++ +GHE + SSSL+P +DP+L+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MITANEIRRRFLEFYKAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT+E  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEELKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TV+ +D+EA +LW K S + A++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKERLYATVFRDDDEAEQLWLKHSDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +R++EIWNLVFMQ++Q    +R  LPK SIDTGMGLER+  V Q
Sbjct: 181 EHMTCGPDCGIGKCDCDRFLEIWNLVFMQYDQDATGKREPLPKPSIDTGMGLERITAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D D+F+ +IQ +  +  + Y  ++      RVI DH R+ +F+I DGILP+NEG
Sbjct: 241 GVFSNFDTDIFQAIIQYTCGLANVSYRSDDETDTALRVIADHSRAIAFMITDGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RL+G T+  +      +   MG  YPEL +    +   +R E++
Sbjct: 301 RGYVLRRLIRRAYRFGRLIGLTDTFLHKTALKVVDIMGDDYPELRENSDFMARVVREEED 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TLD+GL +L+  L+ L       + GD+AF+LYDT G PLDI+ DI   RG + +D
Sbjct: 361 RFNRTLDKGLSMLEDELATLSASGAARVPGDIAFRLYDTFGFPLDIVNDIAEKRGFS-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   ++EQ+ RA+A   G G       +  L E+   ++FIGYD L G         
Sbjct: 420 EDGFKALMKEQKERAKAAWKGSGEKDIASRFQPLLEEGMRSEFIGYDHLCG--------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                            + A++ +  + VE   +GQK  +V ++TPFY  +GGQ GD G 
Sbjct: 471 --------------EGRIVALMDEHALAVERLAAGQKGYLVTNRTPFYGASGGQSGDIGT 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 ++++ D  K +  + VHH     G +  +  + LT+   +R   + NH+ THLL
Sbjct: 517 IASPSGKVRVVDTIKPSPELVVHHVEAVEGDILLDQEVDLTVTEDDRVASARNHTCTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD LRFD TH  P+T  EL ++E  VN +I  ++P+ T  
Sbjct: 577 HAALRRVLGDHVKQAGSLVAPDRLRFDFTHIAPMTPEELAAVEREVNRVIMADIPLETDH 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ +DA+  GA AL G KY D VRVV++        S  LCGGTH+ +TG+  L  IVSE
Sbjct: 637 MHYDDAVKRGAMALFGEKYGDEVRVVAIA-----DESVELCGGTHLRATGQAGLFLIVSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RRIEA+TG  A   ++ Q  +   L++ LK   G +V RVE + +E R L+  
Sbjct: 692 SGVAAGVRRIEALTGWNAMHAVLAQRSEQAQLSAMLKARPGEIVSRVESLQKENRTLRKD 751

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   Q               +A V  ++  +   + K L+ +MD ++ K+ SGI  L 
Sbjct: 752 MERAAAQATSGQGRNIMDEATDVAGVKLLAAKVEVPNVKALRDLMDDVRSKLVSGIACLA 811

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K  ++I V++DL  RF A  L +  A  + GG GGGRP MAQ+GG N    D A
Sbjct: 812 AVDGD-KVQLIIAVSKDLQTRFTAPQLIKDVAAEV-GGSGGGRPDMAQAGGTNPAGIDAA 869

Query: 889 IAGVASFL 896
            A + S +
Sbjct: 870 FAKLRSLI 877


>gi|322677738|gb|EFY73801.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
          Length = 876

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRF+ +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFNFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|198283180|ref|YP_002219501.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667664|ref|YP_002425409.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247701|gb|ACH83294.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519877|gb|ACK80463.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 877

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/904 (43%), Positives = 538/904 (59%), Gaps = 39/904 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               +IR  FLE+F + GH+++PSS LIP NDPTL+FTN+GMVPFK++F G E   Y+  
Sbjct: 1   MQAQAIRQAFLEYFVEQGHQIVPSSPLIPRNDPTLLFTNAGMVPFKDVFLGLETRPYRRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK   I  AW  LT+   L 
Sbjct: 61  VSSQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGFAWRFLTERLGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ITVY+ED+EA  +W    G+   ++ R    DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 PEKLWITVYEEDDEAADIWMNEIGIDPARLSRCGEKDNFWSMGDTGPCGPCSEIFYDHGP 180

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            IPGG PGS  E+G+RYIEIWNLVFMQF++ +      LPK S+DTGMGLER+A VLQ  
Sbjct: 181 HIPGGPPGSPEEDGDRYIEIWNLVFMQFDRDSSGTLTPLPKPSVDTGMGLERLAAVLQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            NNYD DLFK LI A+  ++G  Y  +    ++ RV+ DH+R+ SFLI DG+LPANEGRG
Sbjct: 241 HNNYDTDLFKPLIAAAATISGKTYGSDAATDISLRVLADHIRACSFLITDGVLPANEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + R LG        L+  L  EMGSA+PEL +A+  +E  L  E+ RF
Sbjct: 301 YVLRRIIRRAVRHGRKLGMETVFFHQLVAPLVAEMGSAFPELTRAQREVERALEREETRF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL+RGL LL+  ++ L     + G++ F+L DT G P+D+  DI   R L  +D+  +
Sbjct: 361 RETLERGLSLLEEAIADLAAGAAIPGEIIFRLADTFGFPVDLTADIARERDLI-MDMEGY 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A+ EQRSR+RA   G G   TE+++  L  +   T+F GY                  
Sbjct: 420 EAAMAEQRSRSRAAWAGSGEVKTERVYHDLAMRLPVTEFTGY------------------ 461

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                 T      V A+++ GE V    +G    V+ D+TPFY E+GGQ GD G    D 
Sbjct: 462 -----STCADEGKVVALIRDGEEVAFLEAGDMGVVILDRTPFYGESGGQAGDRGELQSDD 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +TD QK    + VH   +E G LR    +V +ID   RR  + +HSATHLLH AL 
Sbjct: 517 ALFAVTDTQKPMGHLHVHLGRMESGRLRVGDMVVASIDEVARRATAAHHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILGSHV Q GS + P+ LRFD +  +P+T+A+L+ IE  VN  I  N+   TRI+   +
Sbjct: 577 NILGSHVQQKGSLVNPERLRFDFSQPEPVTAAQLREIERVVNAAIRNNVGAETRILPVAE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY D VRVV +     G  S  LCGGTHV + G+I +  I+SES + A
Sbjct: 637 AQALGAMALFGEKYGDEVRVVRM-----GDFSMELCGGTHVEALGDIGVFKILSESGVAA 691

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEA+TG  A   +   +E+L++ A  LKV+   +  R+ +  E  R+L+    K K
Sbjct: 692 GIRRIEAVTGAVALEAIQRDEERLQAAAGLLKVAPAELDQRLAQTLERLRQLEKELEKVK 751

Query: 779 -----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
                            +  V  +   +  +D K L+  +D L+ ++  G+I+L G+ +E
Sbjct: 752 RDEAARAGADLAAEAEDVGGVPVLIRRLEGMDGKALRDALDRLRSQLPDGVIVLAGVERE 811

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K +++  V + L  R +A +L    A+ L GG GGGRP +AQ+G  N    D A+A   
Sbjct: 812 -KVALIAGVGKGLTGRVHAGELVNTVAQPL-GGKGGGRPELAQAGAGNPAALDAALAAAR 869

Query: 894 SFLK 897
            ++K
Sbjct: 870 DWVK 873


>gi|163856313|ref|YP_001630611.1| alanyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|205829993|sp|A9IK31|SYA_BORPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|163260041|emb|CAP42342.1| alaS2 [Bordetella petrii]
          Length = 873

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/910 (42%), Positives = 539/910 (59%), Gaps = 52/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FFQ  GH ++PS+SL+P NDPTL+FTNSGMV FK++FTG+E   Y   
Sbjct: 1   MKSSEIRQKFLQFFQSKGHTIVPSASLVPGNDPTLLFTNSGMVQFKDVFTGKETRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED++A+ +W    G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYQEDDQAYDIWATEVGVPRERIIRIGDNKGSRYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMTPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ + TG+        + +VI DH+R+ +FLI DG++P+
Sbjct: 241 AAVLQGVHSNYEIDLFQNLIRAAARETGVT--NLEDNSLKVIADHIRACAFLIVDGVIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL QA   + + L+ 
Sbjct: 299 NEGRGYVLRRIVRRALRHGYKLGQTKPFFYKLVPDLVAEMGQAYPELTQAAERVAQVLKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERFG+TL+ G+ +LDG L+ +     L+G   F LYDT+G P+D+  DI   R    +
Sbjct: 359 EEERFGETLEHGMKILDGALAGVPAGGQLDGTTLFTLYDTYGFPVDLTADICRERN-VEV 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F+ A+  QR +ARA      +         L  +   T+F GY+ L          
Sbjct: 418 DMAGFDAAMARQRDQARAAGKFKMAEG-------LSYEGADTRFEGYEKLELDGV----- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+   G  VE   +GQ   VV D TPFYAE+GGQ+GDTG 
Sbjct: 466 -----------------KVAALYVDGTQVERVQAGQHAVVVLDATPFYAESGGQVGDTGL 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G R  + D  K   G+F HH ++E G L    +L+  +D   R +   NHSATHL+
Sbjct: 509 LESGGARFAVADTLKIQAGVFGHHGVLESGSLAVGDTLLARVDAVRRARTVRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS + PD  RFD  H  P+++ ++  +E  VN  +  N P   R+
Sbjct: 569 HKALRQVLGAHVQQRGSLVDPDKTRFDFAHDAPLSAEQIAQVEAIVNAEVLANQPTQARV 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IV+E
Sbjct: 629 MAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVSRTGDIGLFKIVAE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RR+EAITG  A + +  Q+  L   A  L+ +  ++  R+ ++ E+ R L+  
Sbjct: 683 GGVAAGVRRVEAITGDNALAWVQNQNALLLRAAGMLRTTPADLPERLAQVQEQLRTLEKD 742

Query: 774 HAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + + +L             ++  V  ++  + ++D K L+ ++D L+ +++S +++L 
Sbjct: 743 LEQARGKLAASAGNDLAAKAAEVKGVKVLAASLGDIDPKALRGMVDNLKDRLKSAVVLLA 802

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + K S++  VT DL  R  A DL    A  +GG G GGRP MA  GG +      A
Sbjct: 803 SAGGDGKISLVGGVTADLTGRVKAGDLVGFVAGQVGGKG-GGRPDMAMGGGNDAQALPAA 861

Query: 889 IAGVASFLKK 898
           +A V  ++ +
Sbjct: 862 VASVQGWVDE 871


>gi|221133281|ref|ZP_03559586.1| alanyl-tRNA synthetase [Glaciecola sp. HTCC2999]
          Length = 860

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/896 (42%), Positives = 539/896 (60%), Gaps = 47/896 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL++F ++GH+ + SSSL+P +DPTL+FTN+GM  FK++F G E+  Y    
Sbjct: 4   STAQIRQAFLDYFGQHGHQSVSSSSLVPHDDPTLLFTNAGMNQFKDVFLGAEQRNYSRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LTKE  L  
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWTFLTKELGLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY ED+EAF +W+   GL  +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 124 EKLLVTVYAEDDEAFAIWENEIGLPPEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 183

Query: 183 IPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG+PGS  E+G+R+IEIWNLVFMQ+ +        LPK SIDTGMGLER++ +LQ   
Sbjct: 184 IWGGVPGSPEEDGDRFIEIWNLVFMQYNKSADGTMEPLPKPSIDTGMGLERISAILQNVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+ID+F+ LI+A+ ++ G      +  + RVI DH+RS SFLI DG++P+NEGRGYVL
Sbjct: 244 SNYEIDIFQALIKAAAEIVGT--VDLDDKSLRVIADHIRSCSFLICDGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  +     L+ AL  +MG AYPEL++   +IE+ LR E+E+F +T
Sbjct: 302 RRIIRRAVRHGYKLGAQDIFFYKLVSALTQQMGDAYPELVEQLPVIEKVLRVEEEQFSRT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG+ +L   L+ L   +++ G+V FKLYDT+G P D+  D+        ID   F  A
Sbjct: 362 LERGMNILTQQLTELE-GDVVPGEVVFKLYDTYGFPADLTADVAREHN-VRIDETGFETA 419

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++         +    +      +    +   AT F GYD                    
Sbjct: 420 MQ------AQRARAQQASNFGTDYNEALKITHATDFTGYDKTTDV--------------- 458

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                     V  I+ +   V    +GQK  V+ D T FYAE+GGQ GD+G    +   +
Sbjct: 459 --------GTVLEIIVENTSVTSIDAGQKGIVILDNTAFYAESGGQTGDSGVLKLNDAAV 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
                 +K    F  H  + +  L    ++V  +D   R  + +NHSATHLLH AL  +L
Sbjct: 511 FTVTDTQKLANAF-GHQGIAKAKLSVGANVVTQVDDSRREAIKLNHSATHLLHAALRELL 569

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV+Q GS +  + LRFD  H + +T+ +L SIE  VN  I QN  + T++M  ++A A
Sbjct: 570 GEHVAQKGSLVDDEKLRFDFAHYEAVTTEQLISIERLVNAQIRQNHELTTKLMELDEAKA 629

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL G KY+++VRVVS+     G  S+ LCGGTHVS TG+I L  I SES I +G+R
Sbjct: 630 SGAMALFGEKYDEKVRVVSM-----GNFSTELCGGTHVSRTGDIGLCKITSESGIASGVR 684

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEAITG+ A +++  Q   L++ A+ LKV   N++ R+    +  +  +    + K QL
Sbjct: 685 RIEAITGEAAINYVQEQAYLLQNAANILKVEPINLIERINNNQDLLKATEKSLNQAKQQL 744

Query: 782 NVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             +  S        I + N +   + +V+ K LK ++D L++KI SGII+L G+  + K 
Sbjct: 745 ASQQGSDLMNQVQVIKEHNVLVANLPDVEVKALKGMLDELKQKISSGIIVL-GVPGDGKV 803

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +++  VT DL+++  A +L    A  + GG GGGRP MAQ+GG      + A+  V
Sbjct: 804 NLIAGVTGDLINKIKAGELVNFVASQV-GGKGGGRPDMAQAGGTKPENLEHALTSV 858


>gi|332035475|gb|EGI71972.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 866

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/903 (43%), Positives = 543/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF    H+++PSSSLIP ND TL+F N+GMV FK++F G E   Y   
Sbjct: 4   MTTAQIRQQFLDFFASKQHQIVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   L 
Sbjct: 64  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTEVVKLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           Q +L +T+Y +DEEAF+ W K  GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 124 QEKLLVTIYHDDEEAFEYWSKDIGLSEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 183

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG P    E+G+R+IEIWNLVFMQ+ +Q+      LPK S+DTGMGLER++ +LQ  
Sbjct: 184 HIWGGPPGTPEEDGDRFIEIWNLVFMQYNRQSDGTMLPLPKQSVDTGMGLERISAILQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI A+  VT  +    +  + RV+ DH+RS +FLI+DG++P+NEGRGYV
Sbjct: 244 HSNYEIDLFQGLIAAAASVTNAQDM--DDKSLRVVADHIRSCAFLISDGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL  +MG AYPEL + + +IE+ LR E+E+FGK
Sbjct: 302 LRRIIRRAVRHGNKLGAQGSFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGK 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L+  LS L   +I+ GD+ FKLYDT+G P D+  D+   R +  ID   F +
Sbjct: 362 TLERGLAILEESLSDLK-GDIIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHQGFEE 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +  QR  A+        G     +    +    T+F GYD                   
Sbjct: 420 CMAVQRKTAQQA------GKFGADYNEQLKSEKLTEFKGYDSTHH--------------- 458

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S+ V  I   GE V+    GQ+  VV D+TPFYAE+GGQ GDTG     G  
Sbjct: 459 --------SATVVEIFAGGEAVQLLEDGQQGIVVLDRTPFYAESGGQTGDTGTITVAGGE 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +T+  K        H  + +G +     +  TID   R  +  NH+ATH+LH AL  +
Sbjct: 511 FNVTNTTKLGNAF--AHHGIVQGRIGVNDKVDATIDNARRDSIKKNHTATHILHEALRQL 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS + PD LRFD +H + +T  EL+ IE  VND I +N  + T +M  +DA 
Sbjct: 569 LGDHVGQKGSLVQPDRLRFDFSHFEAVTKDELREIERVVNDEIRRNFALNTELMAIDDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY+D VRVV++     G +S  LCGGTHV   G+I L  IVSES I AG+
Sbjct: 629 AKGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A +++  Q+++L  +A+ +K    +V+ +V  + E+ + L+   A+   +
Sbjct: 684 RRIEAVTGADAVAYVSEQEQQLHDVAALVKGDSASVLEKVTALLEKSKGLEKQIAQLNDK 743

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S  +I  V  +   +   +SK L+ ++D L+ KI SG+I L G++   K
Sbjct: 744 LASAAGASLLDSIVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVASGDK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  +  A +L    A  +GG G GGRP MAQ+GG        A+  V ++
Sbjct: 803 VSLIAGVTKDLTGKVKAGELVNHMAGQVGGKG-GGRPDMAQAGGSEPQNLAAALDSVTAW 861

Query: 896 LKK 898
           L +
Sbjct: 862 LTE 864


>gi|238791374|ref|ZP_04635013.1| Alanyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238729507|gb|EEQ21022.1| Alanyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 875

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANEVGVPRERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  Q TG      +  + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIKAVAQATGATD--LSSKSLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL Q + ++E  L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNILGAKETFFYKLVAPLIAVMGSAADELKQQQAMVEHVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + ++     A+QF GYD +        
Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNNMIRVDSASQFSGYDHV-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E  +G++  VV +QTPFY E+GGQ+GD 
Sbjct: 465 ---------------HQQATVTALFRNGEAVDEINAGEEAVVVLNQTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK       H   + +G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFAVADTQKYG-QAIGHLGQLTQGTLRVNHSIDAQVDVARRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +NLPV T
Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNEQIRRNLPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDTAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L  +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQTDLLADVAHLVKGDSHNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +        I  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFL 896
            A+AGV +++
Sbjct: 862 SALAGVEAWV 871


>gi|330502669|ref|YP_004379538.1| alanyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328916955|gb|AEB57786.1| alanyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 874

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/912 (43%), Positives = 554/912 (60%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+  +++IRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGIPTERMIRIGDNKGAPYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD GE I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L+ AS +  G         + +V+ DH+RS SFLIADG+ 
Sbjct: 241 RISAVLQHVNSNYEIDLFQNLLAASAKAIGCA--NEGQASLKVVADHIRSCSFLIADGVT 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ GDV FKLYDT+G P+D+  DI   R L+
Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLASLQ-GSVIPGDVVFKLYDTYGFPVDLTADIARERELS 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RAR+ S           + +L +    T+F+GY+   G      
Sbjct: 418 -VDEEGFEREMEAQRERARSASAFGM------DYNALVKVDADTRFLGYEGTSG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S  + A+ + G  V+    G++  VV DQTPFYAE+GGQ+GD 
Sbjct: 465 -----------------SGKIIALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGDC 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G+R  + D  K     F+HH +V +G L    S+   +D + R+  ++NHSATH
Sbjct: 508 GYLEGAGVRFDVRDTTKAGG-AFLHHGVVAKGGLNVGASVKAEVDAEVRQATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   ++K +ED VN ++ +N  V T
Sbjct: 567 LLHEALRIVLGDHVQQKGSLVNSQRLRFDFSHFEAIKPEQIKQLEDIVNRVVRENSAVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + E A A GA AL G KY D+VRV+S+    GG  S  LCGGTHV+ TG+I L  IV
Sbjct: 627 EVTDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVARTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ NV+ ++  + E  R+L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNVLDKLSALIERNRQLE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +           S   +     ++  +  +D K L +++D L+ K+ S +I+
Sbjct: 743 KELEQLKAKAASAAGNDLAGSAVDVKGTKVLAARLDGLDGKALLALVDQLKNKLGSAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G+ +E K  ++  VT+DL  +  A DL R +A  +GG G GGRP MAQ GG +  K D
Sbjct: 803 LGGVFEE-KVVLVAGVTQDLTSKLKAGDLMRQAAAAVGGKG-GGRPDMAQGGGVDAGKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A  A+ +++
Sbjct: 861 EALALAATLVEQ 872


>gi|168235854|ref|ZP_02660912.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737652|ref|YP_002115779.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194713154|gb|ACF92375.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290777|gb|EDY30131.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 876

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELASIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|167628656|ref|YP_001679155.1| alanyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|205830065|sp|B0TFY7|SYA_HELMI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167591396|gb|ABZ83144.1| alanyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 883

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/907 (42%), Positives = 552/907 (60%), Gaps = 43/907 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FLE+F++ GH ++ SSSL+P NDPTL+F+N+GM  FK++F G EK  Y   T
Sbjct: 4   TGNRVRQLFLEYFEQKGHTIVASSSLVPHNDPTLLFSNAGMNQFKDVFLGFEKRPYLRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L +
Sbjct: 64  TSQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAIRYAWEFLTDVCGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY TVY +D+EAF LW+ + GL   +I+R+   DNFW+M +TGPCGPCSEI  D+GE 
Sbjct: 124 DKLYATVYLDDDEAFALWRDMIGLPEARILRLGEKDNFWAMGDTGPCGPCSEILIDRGEH 183

Query: 183 IPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +       +    + +R++EIWNLVFMQ+ +        LP+ SIDTGMGLER+ +VLQ+
Sbjct: 184 LRCKAEECAIGKCDCDRWLEIWNLVFMQYNRDENGTMTPLPRPSIDTGMGLERVTSVLQK 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRG 298
             +NYD DL + LI   EQ+ G  Y  ++     RVI DH+RS +FLI DG+LP+NEGRG
Sbjct: 244 VGSNYDTDLLRPLIAFVEQLCGQVYHRDDRGFPFRVIADHIRSCTFLITDGVLPSNEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + ++LG  +P M  ++P +   MG AYP++ + +  + + ++ E+ERF
Sbjct: 304 YVLRRILRRAVRFGKVLGIDKPFMYEIVPVVVELMGEAYPDIREKQDFVCKVIKIEEERF 363

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL  G+ +   +++ + ++   +L G  AF LYDT+G PLD+ +DI    GL  +D  
Sbjct: 364 HETLHDGMRIAADMVAKVKQEGGNVLPGKQAFTLYDTYGFPLDLAEDIAEENGLT-VDKD 422

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F QA+E QR RARA       G   ++W  L ++ G T F GY    G           
Sbjct: 423 GFQQAMEAQRERARAARQDTAYGAGMELWAELLQQLGPTVFTGYGRTSG----------- 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S+VKAIV     V EA +G  V+VV  +TPFYAE+GGQ+GD+G    
Sbjct: 472 ------------ESVVKAIVAGATRVTEAGAGTAVQVVLAETPFYAESGGQIGDSGLLRA 519

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
               +++ D +K A G+ VH  +V  G+ +    +V  ++   R  ++ +HSATHL+H A
Sbjct: 520 GDAVVRVEDTKKMAGGLHVHFGVVAEGVFKEGDQVVAEVESARRLAIARHHSATHLMHKA 579

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +TPD LRFD +H  P+T  E   IE  VN  + Q LPV     + 
Sbjct: 580 LKEVLGEHVNQAGSLVTPDRLRFDFSHFSPLTRDEWNRIEAAVNRAVFQALPVEVFETSI 639

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A GA AL G KY DRVRVV +     G +S  LCGGTH+ +T ++ L  ++SES I
Sbjct: 640 DEAKAMGATALFGEKYGDRVRVVRM-----GNYSMELCGGTHLDNTSQVGLCKLLSESGI 694

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ A ++L  Q+E ++ LA  LKV    V  RV+ +  + R+ +    +
Sbjct: 695 GAGLRRIEAVTGEAALAYLNEQEETVRMLAEKLKVPAAEVTNRVDSLQAQLREKEREMEQ 754

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              +L    +        +I  V  ++  +   D   L+S+ D L++K+ SG+++L  ++
Sbjct: 755 LLSRLAKYQIDDLLAGKEEINGVTVLAAKVQAPDMDALRSMSDLLKEKLGSGVLILGAVA 814

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            + K +++   T+D++ R  +A +L + +AKV GGGG GGRP MAQ+GG + ++   A+ 
Sbjct: 815 GD-KVNLVAAATKDIVGRGVHAGNLVKEAAKVCGGGG-GGRPDMAQAGGKDPSRLSDALE 872

Query: 891 GVASFLK 897
                LK
Sbjct: 873 AAKKLLK 879


>gi|161615724|ref|YP_001589688.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|205830199|sp|A9N0C1|SYA_SALPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161365088|gb|ABX68856.1| hypothetical protein SPAB_03515 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 876

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFSVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|46579502|ref|YP_010310.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|48428505|sp|P61700|SYA_DESVH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|46448916|gb|AAS95569.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233316|gb|ADP86170.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 879

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/908 (42%), Positives = 534/908 (58%), Gaps = 43/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLEF++ +GHE + SSSL+P +DP+L+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MITANEIRRRFLEFYKAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT+E  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEELKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TV+ +D+EA +LW K S + A++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKERLYATVFRDDDEAEQLWLKHSDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +R++EIWNLVFMQ++Q    +R  LPK SIDTGMGLER+  V Q
Sbjct: 181 EHMTCGPDCGIGKCDCDRFLEIWNLVFMQYDQDATGKREPLPKPSIDTGMGLERITAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D D+F+ +IQ +  +  + Y  ++      RVI DH R+ +F+I DGILP+NEG
Sbjct: 241 GVFSNFDTDIFQAIIQYTCGLANVSYRSDDETDTALRVIADHSRAIAFMITDGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RL+G T+  +      +   MG  YPEL +    +   +R E++
Sbjct: 301 RGYVLRRLIRRAYRFGRLIGLTDTFLHKTALKVVDIMGDDYPELRENSDFMARVVREEED 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TLD+GL +L+  L+ L       + GD+AF+LYDT G PLDI+ DI   RG + +D
Sbjct: 361 RFNRTLDKGLSMLEDELATLSASGAAHVPGDIAFRLYDTFGFPLDIVNDIAEKRGFS-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   ++EQ+ RA+A   G G       +  L E+   ++FIGYD L G         
Sbjct: 420 EDGFKALMKEQKERAKAAWKGSGEKDIASRFQPLLEEGMRSEFIGYDHLCG--------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                            + A++ +  + VE   +GQK  +V ++TPFY  +GGQ GD G 
Sbjct: 471 --------------EGRIVALMDEHALAVERLAAGQKGYLVTNRTPFYGASGGQSGDIGT 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 ++++ D  K +  + VHH     G +  +  + LT+   +R   + NH+ THLL
Sbjct: 517 IASPSGKVRVVDTIKPSPELVVHHVEAVEGDILLDQEVDLTVTEDDRVASARNHTCTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD LRFD TH  P+T  EL ++E  VN +I  ++P+ T  
Sbjct: 577 HAALRRVLGDHVKQAGSLVAPDRLRFDFTHIAPMTPEELAAVEREVNRVIMADIPLETDH 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ +DA+  GA AL G KY D VRVV++        S  LCGGTH+ +TG+  L  IVSE
Sbjct: 637 MHYDDAVKRGAMALFGEKYGDEVRVVAIA-----DESVELCGGTHLRATGQAGLFLIVSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RRIEA+TG  A   ++ Q  +   L++ LK   G +V RVE + +E R L+  
Sbjct: 692 SGVAAGVRRIEALTGWNAMHAVLAQRSEQAQLSAMLKARPGEIVSRVESLQKENRTLRKD 751

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   Q               +A V  ++  +   + K L+ +MD ++ K+ SGI  L 
Sbjct: 752 MERAAAQATSGQGRNIMDEATDVAGVKLLAAKVEVPNVKALRDLMDDVRSKLVSGIACLA 811

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K  ++I V++DL  RF A  L +  A  + GG GGGRP MAQ+GG N    D A
Sbjct: 812 AVDGD-KVQLIIAVSKDLQTRFTAPQLIKDVAAEV-GGSGGGRPDMAQAGGTNPAGIDAA 869

Query: 889 IAGVASFL 896
            A + S +
Sbjct: 870 FAKLRSLI 877


>gi|227329399|ref|ZP_03833423.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 875

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/910 (42%), Positives = 542/910 (59%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYARA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG P    E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLFK LI A  +  G         + RVI DH+RS +FLIADG++
Sbjct: 243 RVSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTD--LTNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIQVMGPAAEELKKQQSVVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  + +L   + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KTEEEQFARTLERGLSLLDEEIKNLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+  QR RAR              + SL      T F GY+  +       
Sbjct: 420 -VDEEGFEAAMTAQRQRAREA------SGFGVDYNSLIRVDENTPFCGYEKTQQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V AI   G  V++  +G +  V+ ++TPFY E+GGQ+GD 
Sbjct: 467 -----------------QAKVIAIYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   + D QK  +    H   + RG LR   S+   +D Q R ++ +NHSATH
Sbjct: 510 GELKNAGVSFAVQDTQKYGQ-AIGHVGKLTRGTLRVNDSVEANVDSQRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T
Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA A GA AL G KY+D VRV+++     G  S  LCGGTH S TG+I L  I+
Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALE 743

Query: 772 LIH-----AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                    +   + +       ++  V  +   +  VD K L++++D L+ ++ S +I+
Sbjct: 744 KELQQFKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G + E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-GTAAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|62181330|ref|YP_217747.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75481392|sp|Q57KU6|SYA_SALCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|62128963|gb|AAX66666.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715813|gb|EFZ07384.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 876

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|205830248|sp|A9MFZ1|SYA_SALAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 876

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/910 (43%), Positives = 556/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+ +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYGIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  +VTG      +  + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYEIDLFRTLIEAVAKVTGATD--LSNKSLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERDIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFETAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVNGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+    +   +D   R ++ +NHSATH
Sbjct: 510 GELKGVGFTFAVNDTQKYG-QAIGHLGKLSAGALKVGDVVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGAHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH   TG+I L  I+
Sbjct: 629 HIMELEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHARRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERSRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESASLSSKAVDLNGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+  R  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTGRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQDWV 871


>gi|319405869|emb|CBI79501.1| Alanyl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 889

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/912 (51%), Positives = 635/912 (69%), Gaps = 39/912 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+TFL++F++NGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y+ 
Sbjct: 1   MNSVNNIRSTFLDYFRRNGHEIISSSPLVPRNDPTLMFTNAGMVQFKNVFTGFEQCPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L ITVY  D  A +LW+KISGL  +KIIRITTNDNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 SKDKLLITVYHTDNIAAELWRKISGLPNEKIIRITTNDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ+EQ NK+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 GEIFGGPPGSADEDGDRFIEIWNLVFMQYEQVNKEERIELPCPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF  LI AS+++TG+K  G  I +HRVI DHLRSS+FLI+DG+LP+NEGRGY
Sbjct: 241 VHDNYDTDLFCKLISASQEITGVKATGEFIASHRVIADHLRSSAFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  E LM  LLP L  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGAKELLMEQLLPVLIREMGQAYPELVRAEALISEILKLEETRFH 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + +  +G+VAFKLYDT+G PLD+ QD L  RG   +DI +F 
Sbjct: 361 KTLERGLSLLNEASTDLKEGDHFDGEVAFKLYDTYGFPLDLTQDALRRRG-ISVDIEAFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++  RA+  G G+  TE IWFS++++ G T+F+GY+                  
Sbjct: 420 KAMELQKAENRANWSGSGASVTETIWFSIRDQVGTTEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ A++  GEIV+   SGQ   +V +QTPFYAE+GGQ+GD+G   G+  
Sbjct: 462 -----TEKAEGVITALICDGEIVDHISSGQDAMLVVNQTPFYAESGGQIGDSGVISGESF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q++ +G+F+H   V+ G  +    + LT+D + RR++  NHSATHLLH AL  
Sbjct: 517 VFEVRDTQRRGDGVFIHIGKVKSGQAKISDCVELTVDSERRRKIRANHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS ++P  LRFD +H KPI+S ELK +ED  NDI+ QN  V TR+M  +DA
Sbjct: 577 ILGPHVAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSQVTTRLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +  GA AL G KY D VRVVS+             S  LCGGTHV  TG+I L++IV+ES
Sbjct: 637 VFEGAVALFGEKYGDEVRVVSMGERCEPIALKKHWSIELCGGTHVQRTGDIGLIHIVAES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ +G+RRIEA+TG  AR +L  QD+++  +ASFLK+S  N+  RV  ++ + RK +   
Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEIASFLKISPANLEERVRNLFNDRRKFEKEL 756

Query: 775 AK---------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                      + LQ    +++   I  ++FM  ++  +  ++LK+++D+ +K+I+SG++
Sbjct: 757 NNTRKNVVLNGKALQGRKGEITTININGISFMGGVLRNIAIRDLKTLVDSGKKQIKSGVV 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             V +S++ K S ++ VT+DL++  NAVDL R+ + VLGG GGGGRP MAQ+GG  G+KA
Sbjct: 817 AFVSVSEDGKGSAVVGVTDDLINMLNAVDLVRIVSVVLGGQGGGGRPDMAQAGGSKGDKA 876

Query: 886 DQAIAGVASFLK 897
           ++AI  + +FLK
Sbjct: 877 EEAITALKAFLK 888


>gi|121601991|ref|YP_989027.1| alanyl-tRNA synthetase [Bartonella bacilliformis KC583]
 gi|205829988|sp|A1USS4|SYA_BARBK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120614168|gb|ABM44769.1| alanyl-tRNA synthetase [Bartonella bacilliformis KC583]
          Length = 886

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/909 (51%), Positives = 631/909 (69%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+TFL++F +NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MNSVNNIRSTFLDYFHRNGHEVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKHSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF  YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSNYFKEEAIFYAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY +D+ A  LW+KISGLS +KIIRI TNDNFW M +TGPCGPCSEIF+D G
Sbjct: 121 SKDKLLVTVYHDDDVAAGLWRKISGLSEEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ +K++R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DKIWGGPPGSADEDGDRFIEIWNLVFMQYEQLSKEKRIELPQPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI AS+++ G+K  G+   +HRVI DHLRSS+FLIADGI+P+NEGRGY
Sbjct: 241 VHDNYDIDLFRTLIHASQEIIGVKATGDFFASHRVIADHLRSSAFLIADGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  + LM  L+P L +EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGSKDLLMWRLVPVLISEMGQAYPELVRAESLISEILKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   +HL + +  NG+VAFKLYDT+G PLD+ QD L  RG   +D+ +F+
Sbjct: 361 KTLERGLGLLNEASTHLEEGDYFNGEVAFKLYDTYGFPLDLTQDALRRRG-ISVDVDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ Q++ ARA+  G G   TE +WFS++++ GAT+F+GY+                  
Sbjct: 420 KAMKRQKAEARANWSGSGDCVTETVWFSIRDQVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+++ GE+V+    GQK  +V +QTPFY E+GGQ+GD+G   G   
Sbjct: 462 -----TEKAEGIITALIRDGEVVDHIDLGQKAMIVVNQTPFYGESGGQVGDSGIISGANF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKK + +F+H   ++ G  +    + L +D   RR++  NHSATHLLH +L  
Sbjct: 517 IFEVHDTQKKGDNVFIHIGEIKTGQAKKHDCVELIVDSARRRKIRANHSATHLLHESLRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LGSHV Q GS ++PD LRFD +H K I+S ELK IED  NDI+ QN  V TR+M  +DA
Sbjct: 577 TLGSHVVQKGSFVSPDRLRFDFSHPKSISSEELKKIEDLANDIVLQNSKVTTRLMAIDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRV+S+             S  LCGGTHV  TG+I L++I+SE+
Sbjct: 637 IAEGAMALFGEKYGDEVRVISMGNNLEQTGSKKWWSIELCGGTHVQRTGDIGLIHIISET 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+T   AR +L GQD ++  +A  LK S  +V  RV+ + +E RKL+   
Sbjct: 697 SVAAGVRRIEALTATAARLYLHGQDRRVYEIAGLLKTSPADVQERVQTLLDERRKLEKEL 756

Query: 775 --AKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +++K+ LN   ++       I  ++FM  ++S +  K+LK+++D+ +KKI SG++  +
Sbjct: 757 NDSRKKIALNGGSVNSQGDIQTINGISFMGGVVSNILPKDLKALVDSGKKKIGSGVVAFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S++ K S ++ VT+DL D  NAVDL R+ +  LGG GGGGR  MAQ+GG  G KAD+A
Sbjct: 817 SVSEDGKGSAVVGVTDDLTDTLNAVDLVRIISVTLGGQGGGGRRDMAQAGGSEGGKADEA 876

Query: 889 IAGVASFLK 897
           +  +   LK
Sbjct: 877 LVALKDSLK 885


>gi|119899070|ref|YP_934283.1| alanyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|205829981|sp|A1K991|SYA_AZOSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119671483|emb|CAL95396.1| AlaS protein [Azoarcus sp. BH72]
          Length = 885

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/920 (40%), Positives = 522/920 (56%), Gaps = 64/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKSAEIRAKFLKFFESKGHQIVASSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L 
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWELLTEVFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+ A+++IRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYAEDDEAYDIWTKEVGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+RYIEIWN VFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLRSSS 283
           + VLQ    NY+IDLFK LI ++ +  G                   +++V+ DH+R+ S
Sbjct: 241 SAVLQGVHANYEIDLFKSLISSAMRAVGTAEALVERARDSMTNTISPSYKVLADHIRACS 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           FLIADG++P NEGRGYVLRRI+RRA+ +   LG        ++P L  EMG AYPEL   
Sbjct: 301 FLIADGVIPGNEGRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGEAYPELKAG 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIM 401
           +  + + LR E+ERF  T++ G+ +++G L+ +    + + NGD AFKL+DT+G PLD+ 
Sbjct: 361 ERRVADVLRQEEERFFATIENGMAIVEGELAAMATAGNTVFNGDTAFKLHDTYGFPLDLT 420

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
            DI   R +        + A+  Q+ +ARA      +        +L     AT F GYD
Sbjct: 421 ADICREREVTVDAAAF-DAAMARQKEQARAAGKFKMAA-------NLDYDGPATTFHGYD 472

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L                            + A+ + G  V E V G    VV D TPFY
Sbjct: 473 KLE-----------------------AKGNILALYKDGVAVNELVEGDLGVVVLDHTPFY 509

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ GD G   G      + D  K    +F HH +V+ G L     +   +D   R 
Sbjct: 510 AESGGQAGDRGELKGAAGIFGVEDTLKIQASVFGHHGVVKTGKLAVGQGVAARVDTAARA 569

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
             + NHS THL+H AL  +LG HV Q GS + PD  RFD  H+ P+++ E++ +E+ VN 
Sbjct: 570 ATARNHSVTHLMHKALREVLGPHVQQKGSLVDPDKTRFDFAHTAPMSAEEIREVEEIVNR 629

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  N      +M  +DA  SGA  L G KY D VRV+S+        S  LCGGTHV+ 
Sbjct: 630 EILANAATEAAVMALDDAQKSGAMMLFGEKYGDEVRVLSIGS------SKELCGGTHVAR 683

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I L  IV E  + AG+RR+EA+TG+ A  +   Q+ +++ +++ LKV    V  RV 
Sbjct: 684 TGDIGLFKIVVEGGVAAGVRRVEAVTGENALRYTQEQERRVQGVSALLKVQPDEVAERVA 743

Query: 762 EIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            I +  R L+   A+ K +L              +     ++  +   D   L+  MD L
Sbjct: 744 GILDNVRALEKELARLKSKLAASQGEDLVAQAVDVGGAKLLAATLEGADVPTLRETMDKL 803

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           + K++S  I+L  ++ + K S++  VT DL  +  A +L    A+ + GG GGGRP MAQ
Sbjct: 804 KDKLKSAAIVLASVA-DGKVSLIAGVTADLTGKVKAGELVNFVAQQV-GGKGGGRPDMAQ 861

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG   +K   A+A V +++
Sbjct: 862 AGGTEPDKLPAALAAVQAWV 881


>gi|326387205|ref|ZP_08208815.1| alanyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208386|gb|EGD59193.1| alanyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 880

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/890 (50%), Positives = 583/890 (65%), Gaps = 32/890 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F  NGHE++PS+ L+P NDPTLMFTN+GMVPFKN+FTG E      
Sbjct: 1   MTSTNEIRRSFLDYFGSNGHEVVPSAPLVPYNDPTLMFTNAGMVPFKNVFTGLETRAQPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT+E+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTREWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EAF LW+KI+GLS D+IIRI T DNFW+M + GPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDEAFGLWQKIAGLSDDRIIRIATKDNFWAMGDDGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQFEQ   +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQFEQTAGEITGNLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDID F+ LI ASE +TG+K +  +  +HRVI DHLRSSSFL+ADG+LP+NEGRGY
Sbjct: 241 EHDNYDIDTFRALIAASENLTGVKADDAHRASHRVIADHLRSSSFLLADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L+P+L TEMG+AYPEL +A+ LIEE L  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMHRLVPSLITEMGAAYPELGRARALIEEVLEREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL LLD     + +   L G+ AF+LYDT+G P D+ +D L ARG   +D   F+
Sbjct: 361 QTLANGLKLLDEATDGMDEGAKLPGETAFRLYDTYGFPYDLTEDALRARG-ISVDRDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ ARA   G G     ++WF + E+ GAT+F GY    G              
Sbjct: 420 AAMAQQKAAARAAWKGSGQTADSEVWFDIAERVGATEFTGYTATTG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V A+V+ G+ V EA +G  V V+ +QTPFY E+GGQ GDTG   G G+
Sbjct: 466 ---------EAQVVALVKDGKEVTEANAGDAVTVITNQTPFYGESGGQQGDTGTITGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L + D QK    +  H   VE G +R    + L ID   R  L  NHSATHLLH AL  
Sbjct: 517 VLAVGDTQKPLGKLHAHQGTVETGTIRVGDLVRLAIDTARRDALRANHSATHLLHQALRN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS +  + LRFD +    +++ ++  IE  VN  I  N PVVTR+M  +DA
Sbjct: 577 RLGQHVMQKGSLVAGERLRFDFSQPTALSAEDIAVIEAEVNAQIRGNSPVVTRLMTPDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I +GA AL G KY D VRV+S+       +S  LCGGTHV + G+I +  IVSES++ +G
Sbjct: 637 IEAGAMALFGEKYGDEVRVLSMGGSSDATYSVELCGGTHVRALGDIGVFRIVSESAVSSG 696

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG+ AR  L+G+++ LK  A  L+ +   V  RV  + EE RKL+   A+ K 
Sbjct: 697 VRRIEALTGEAARQWLVGREDALKHTAGLLRTTPEEVETRVAALIEERRKLERELAEAKK 756

Query: 780 QLNVE------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            L +         +  +I  + F   ++  +D KEL+ ++D  ++++ SG+  +V +  E
Sbjct: 757 ALALGGGGASPADADEEIGGIKFSGQVLEGLDPKELRGLLDQAKQRLGSGVAAVVAV-NE 815

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            KAS+   VT+DL+ + +AVDL R     LGG GGGGRP MAQ GGP+G+
Sbjct: 816 GKASIAAAVTDDLVGKVSAVDLVRAGVAALGGKGGGGRPDMAQGGGPDGS 865


>gi|254786776|ref|YP_003074205.1| alanine--tRNA ligase [Teredinibacter turnerae T7901]
 gi|237686567|gb|ACR13831.1| alanine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 866

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/903 (42%), Positives = 533/903 (59%), Gaps = 47/903 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL++F + GHE++ SSSL+P NDPTL+FTN+GMV FK++F G EK  Y  
Sbjct: 1   MMKSAEIRDAFLKYFAEQGHEVVNSSSLVPGNDPTLLFTNAGMVQFKDVFLGAEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+  W+ LTK   L
Sbjct: 61  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIRFGWEFLTKVLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TV+  D+EA  +W K  G+SAD+  R+   DNFW M +TGPCGP SEIF+D G
Sbjct: 121 PAERLWVTVHISDDEAADIWLKEVGVSADRFSRL-DEDNFWQMGDTGPCGPSSEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS +++ +RYIEIWNLVFMQFE+Q+  E   LP+ S+DTGMGLER+A V+Q 
Sbjct: 180 ADVPGGPPGSENDDLDRYIEIWNLVFMQFERQSNGELVPLPRPSVDTGMGLERIAAVMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ L++A+   TG         + RVI DH+RS SFL+ DG+LP+NEGRGY
Sbjct: 240 VHSNYEIDLFQALLRAAATATGTSD--LENKSLRVIADHIRSCSFLVCDGVLPSNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRA+ +   LG T      L+ AL  +MG AYPEL Q +  IE+ L +E+++F 
Sbjct: 298 VLRRIMRRAIRHGHKLGQTNSFFHTLVAALVEQMGDAYPELRQHQAQIEKVLLTEEQQFA 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD+G+ +L+  L+ L    ++ G+  F LYDT+G P+D+  DI   R L  +D+  + 
Sbjct: 358 KTLDKGMAILEDSLAGLD-GSVIPGETVFTLYDTYGFPVDLTNDIARERSLT-LDLDGYE 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +E Q++RARA      SG+ +  + +     G T+F+GY  L                
Sbjct: 416 SLMEAQKARARA------SGSFKMDYTANLSLEGTTEFLGYTHLE--------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  V+A+ + GE V +   G +  +V  +TPFY E+GGQ GDTG       
Sbjct: 455 --------ESGKVQALFKDGEKVSQLNEGDEGVIVLSRTPFYGESGGQAGDTGYISTVAG 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++ D QK      +H  ++  G +  +  +   +D   R   ++NHSATHLLH AL  
Sbjct: 507 KFEVRDCQKSGSN-HLHIGVMLSGSIAEQNEVTACVDQSVRAATALNHSATHLLHAALRK 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +    LRFD +H + +  AELK IE  VN  I +N  V T + + + A
Sbjct: 566 VLGDHVTQKGSLVDSQRLRFDFSHFEAVKPAELKQIERIVNGEIRRNTVVTTELCDMDTA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA  L G KY D VRV+S+        S  LCGGTHVS TG+I L+ I+SE  I +G
Sbjct: 626 KERGAMMLFGEKYGDEVRVLSMGE----GFSVELCGGTHVSRTGDIGLMRIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG+ A   +  Q E L ++A  LK    ++  ++E++    + L+   A    
Sbjct: 682 VRRIEAVTGEHALVAVESQAELLSTVAGALKSGAESLPEKLEQLLARNKMLEKELAAANS 741

Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L             +I  +  +   +  VD+K L S +D L+ K+ S  I+L  +  E 
Sbjct: 742 KLAAASADEWLGEAQEIEGLKLLVKSLEGVDAKSLLSTLDQLKNKLGSCAIILASV-NEG 800

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K ++   V+ D   R  A DL +  A  + GG GGGRP MAQ  G +      A+A V +
Sbjct: 801 KIALAAGVSADSTKRLRAGDLLKYVATQV-GGKGGGRPDMAQGAGSDVAALPGALASVPA 859

Query: 895 FLK 897
           +++
Sbjct: 860 WVQ 862


>gi|217969991|ref|YP_002355225.1| alanyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|217507318|gb|ACK54329.1| alanyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 873

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/910 (41%), Positives = 531/910 (58%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKSAEIRDAFLKFFESKGHQIVASSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L 
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+ A+++IRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYAEDDEAYDIWTKEVGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS  E+G+RYIEIWN VFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGDHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + VLQ    NY+IDLF+ LI+A+ + T       +  + +V+ DH+R+ SFLIADG++P 
Sbjct: 241 SAVLQHVHANYEIDLFQALIKAAARETCSADM--DSPSLKVLADHIRACSFLIADGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++P L  EMGSAYPEL   +  I + LR 
Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGSAYPELKDGERRIMDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF  T++ G+ +++  L+ +     ++ +GD AFKL+DT G PLD+  DI   R + 
Sbjct: 359 EEERFFATIENGMAIVEAELAAMEAAGKKVFDGDTAFKLHDTFGFPLDLTADICREREVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D ++F+ A+  Q+ +ARA      +        +L+     T F GY LL        
Sbjct: 419 -VDALAFDAAMARQKEQARAAGKFKMAA-------NLEYDGPETTFHGYTLLE------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G  V E + G+   VV D TPFYAE+GGQ+GD 
Sbjct: 464 ----------------EKGNILALYKDGVPVNELLEGEMGVVVLDHTPFYAESGGQVGDR 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK    +F HH +V  G L     +V  +D   R   + NHS TH
Sbjct: 508 GELRAAAGIFGVEDTQKIQAAVFGHHGVVRTGKLAVGQGVVARVDVAARAATARNHSVTH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS + PD  RFD  H+ P+++ E++ +E+ VN  I  N     
Sbjct: 568 LMHKALREVLGAHVQQKGSLVDPDKTRFDFAHTAPMSAEEIREVEEIVNREILANAATQA 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  E A  SGA  L G KY D VRV+S+        S  LCGGTHV+ TG+I L  IV
Sbjct: 628 EVMALEAAQKSGAMMLFGEKYADEVRVLSIG------TSKELCGGTHVARTGDIGLFKIV 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG+ A  +   Q+ +++ +++ LKV    V  RV  I +  R L+
Sbjct: 682 GEGGVAAGIRRVEAITGENALRYAQEQERRVQGMSALLKVQPDEVAERVAGILDNVRALE 741

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A+ K +L             +I  +  ++ ++   D+  L+  MD L+ K++S  I+
Sbjct: 742 KELARLKSKLAASQGDELVSQAVEIKGIRVLAALLEGADAPTLRDTMDKLKDKLKSAAIV 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 802 LAAVA-DGKVSLIAGVTADHTAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPENLA 859

Query: 887 QAIAGVASFL 896
            A+AGV  ++
Sbjct: 860 AALAGVKDWV 869


>gi|198245112|ref|YP_002216798.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205353771|ref|YP_002227572.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858091|ref|YP_002244742.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|197939628|gb|ACH76961.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205273552|emb|CAR38539.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206709894|emb|CAR34247.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326624557|gb|EGE30902.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326628879|gb|EGE35222.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 876

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/895 (43%), Positives = 557/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q +     LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQAEGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|167550339|ref|ZP_02344096.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205324713|gb|EDZ12552.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 876

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKLSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|260773533|ref|ZP_05882449.1| alanyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260612672|gb|EEX37875.1| alanyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 860

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/911 (41%), Positives = 537/911 (58%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTEVVKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY  D+EAF +W +  G+  D+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYQTDDEAFNIWHQQIGIPQDRIIRIGDKPGGKAYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS+ E+G+R+IEIWN+VFMQF +    +   LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGPPGSAEEDGDRFIEIWNVVFMQFNRHADGKMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ + Q   +NY+ID+F+ LI+A+ +V G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAITQGVHSNYEIDVFQTLIKAAAEVIG--YQDLANQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL +   L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVAPLAEVMGSAGEELKRQHALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L    +  +L+GD  FKLYDT+G P D+  D+   RG   
Sbjct: 361 IEEENFGRTLERGMAILNDALD-AVEGSVLDGDTVFKLYDTYGFPADLTNDVARERGFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR RAR       +G     + SL +  G T+F GY   +        
Sbjct: 419 IDEEGFEAAMEEQRQRAR------DAGNFGTDYNSLIKVDGETEFCGYSATQKM------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+   G+ V    +G K  VV + TPFYAE+GGQ GD G
Sbjct: 467 -----------------SPVSALFVDGQEVSALSAGDKAIVVLETTPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK       H+ +++ G+L +   +   +D + R  +S+NHSATHL
Sbjct: 510 LLRTASGVFKVEDTQKLGN-AIAHYGVMQEGVLASSDHVEALVDEKRRNAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I  N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVRAENLRFDFSHLEAMTAAEIKQVERLVNAQIRLNHVIETH 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+++VRV+S+     G  S+ LCGG H S TG+I L  I+S
Sbjct: 629 VMDIESAKQKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASHTGDIGLFKILS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AGIRRIEA+TG+ A   L  Q  K +               ++ E  ++ ++L+ 
Sbjct: 684 EGGVAAGIRRIEAVTGEAALDALETQQHKYEE--------------KLSEAMQKTKQLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  +  +        IA V  +   ++  D+K L+ ++D L+ ++ SGII+L
Sbjct: 730 EIQQLKDKLASQASANLIDQVKLIAGVKVLVAQLNGADNKALRGMVDELKNQLGSGIILL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K  ++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG +      
Sbjct: 790 GNVA-DDKVGLIAGVTNDLTAKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGSDAQALPL 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|207728244|ref|YP_002256638.1| alanyl-trna synthetase (alanine--trna ligase) (alars) protein
           [Ralstonia solanacearum MolK2]
 gi|206591490|emb|CAQ57102.1| alanyl-trna synthetase (alanine--trna ligase) (alars) protein
           [Ralstonia solanacearum MolK2]
          Length = 893

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/917 (41%), Positives = 535/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 14  MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 73

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 74  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 134 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  I GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 194 IFYDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 253

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 254 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 311

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + 
Sbjct: 312 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVV 371

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT G PLD+ QD+  
Sbjct: 372 DVLRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDVCR 431

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 +D  +F+ A+  QR +ARA      +  T      L      T F GYD L   
Sbjct: 432 E-NDVIVDEAAFDAAMNRQREQARAAGKFKLAAGT------LDYTGDKTTFHGYDQLVRE 484

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+    GQ   VV D TPFYAE+GG
Sbjct: 485 ----------------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGG 522

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 523 QVGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRN 582

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 583 HSATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 642

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                +IM  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 643 AQTAAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 697 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQ 756

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K++
Sbjct: 757 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  +S E K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 817 TAAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 874

Query: 882 GNKADQAIAGVASFLKK 898
            +K  QA+AGV +++++
Sbjct: 875 PDKLPQALAGVTAWVQQ 891


>gi|148262305|ref|YP_001229011.1| alanyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|205830100|sp|A5GD98|SYA_GEOUR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146395805|gb|ABQ24438.1| alanyl-tRNA synthetase [Geobacter uraniireducens Rf4]
          Length = 876

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/906 (42%), Positives = 548/906 (60%), Gaps = 42/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F +FF++ GH ++ SS+LIP NDPTL+FTN+GM  FK++F G EK  Y   
Sbjct: 1   MTGKEIRAQFFKFFEERGHTVVESSNLIPRNDPTLLFTNAGMNQFKDVFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  LD
Sbjct: 61  CSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKELKLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 KDRLYVTVYTDDDEAADIWNRQEGVPLERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWN VFMQF +  +     LPK S+DTGMGLER++TV+Q 
Sbjct: 181 GTGCGSPTCEVGCDCDRYMEIWNNVFMQFNRDAQGNLTPLPKPSVDTGMGLERISTVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DL + +I+  E+++G +Y     + V+ RVI DH R+ +FLI DGILP+NEGR
Sbjct: 241 VTSNYDTDLLQGIIKHVEKLSGKRYRQDERDDVSMRVIADHSRAITFLICDGILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG+ EP +  ++ A+ T MG AYPEL++ +  I++ + +E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGFAEPALYRIVDAVNTMMGDAYPELLEREEYIKKVIHAEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+  ++ L K+   ++ G+V FKLYDT+G P+D+  DI+   G   ID 
Sbjct: 361 FIETLDRGLAILNEEVAALKKEGKSVVPGEVIFKLYDTYGFPVDLTADIVENEGFT-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E QR +AR +  G G     +I+ +L  +   + F+GY               
Sbjct: 420 DGFALCMERQRLQARENWKGSGEEGLAEIYKTLHGRGIRSAFVGYSE------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AI+++G  V EAV+G+ VEVV D TPFY  +GGQ GDTG   
Sbjct: 467 ----------QTAYSAITAILREGAEVAEAVAGEMVEVVVDTTPFYGASGGQAGDTGVIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                L++    K    + VH A+V  G ++   +  L +  + R   + NH+ATHLL  
Sbjct: 517 TGSAHLRVVATSKPFPDLTVHRALVTEGTVKAGDAADLRVATEVRGATARNHTATHLLQS 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +T + LRFD TH   +T  EL+ +E+ VN  +  N  V +  M 
Sbjct: 577 ALRQVLGEHVKQAGSLVTAERLRFDFTHFSAMTVEELRRVENIVNTYVMDNADVKSLEMA 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A+ SGA AL G KY DRVRVV V     G  SS LCGGTHV + G+I    IV E+ 
Sbjct: 637 ATEAMQSGATALFGEKYGDRVRVVKV-----GEVSSELCGGTHVRAAGDIGFFKIVGEAG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG  A  ++   +++ +S+A  +K   G  + +V+ +    ++LQ    
Sbjct: 692 IAAGVRRIEALTGSGALEYVQQLEDEQRSIAVLVKAEGGTALDKVDRLLARQKELQREVE 751

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN    +       +   +  ++  +   D K L+ + D+L+ ++QSG+I++  +
Sbjct: 752 ALQARLNASRSADLLAGARETNGIKVLAAKVEMDDPKGLRELADSLKDRLQSGVIVIGCV 811

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S   KA++L+ VT+DL DR  A D+ +  A ++ GG GGG+P +AQ+GG      D+A+ 
Sbjct: 812 SA-GKANLLVAVTKDLSDRLRAGDIIKSLAPII-GGSGGGKPELAQAGGTKPENLDEALE 869

Query: 891 GVASFL 896
                +
Sbjct: 870 AAYKII 875


>gi|260767196|ref|ZP_05876138.1| alanyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260617804|gb|EEX42981.1| alanyl-tRNA synthetase [Vibrio furnissii CIP 102972]
          Length = 860

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/906 (42%), Positives = 538/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTEVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY  D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYQTDDEAFDIWNKQVGIPADRIVRIGDKPGGKAYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS  E+G+R+IEIWN VFMQF +    +   LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGSPEEDGDRFIEIWNNVFMQFNRHADGKMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+  V G  Y+  +  + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL +   ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGSAGEELKKQHAIVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   E L+G+  FKLYDT+G P D+  D+   RG   
Sbjct: 361 IEEENFGRTLDRGMAILNEALDALSGTE-LDGETVFKLYDTYGFPADLTNDVARERGFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR RAR        G     +  L +  GAT+F GY   +G       
Sbjct: 419 IDEAGFEAAMEEQRQRAREA------GHFGTDYNQLIKVEGATEFCGYSATQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  +G+      +G K  +V ++TPFYAE+GGQ GD G
Sbjct: 466 ----------------ESTITEMFVEGQAAASLSAGDKAIIVLNETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++  G+     ++   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGVFHVVDTQKLGN-AIAHHGVMAEGVFAQGDTVHAIVDAKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  +GLRFD +H + +++AELK +E  VN+ +  N  + T 
Sbjct: 569 LHAALRRVLGEHVTQKGSLVRAEGLRFDFSHLEAVSAAELKEVERLVNEQVRTNHRIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY+++VRV+S+     G  S+ LCGG H SSTG+I L  I S
Sbjct: 629 IMDIDAAKAKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A  +L  Q  +        +    ++  + + + +E + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDYLDAQHAQ-------FESKVADMASKAKGLEKEIQHLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A ++            IA V  +   +   D+K L+ ++D L+ ++ SGIIML  ++ 
Sbjct: 737 KLAAKESASLTS--KVKDIAGVKVLVAQLDGADNKALRGMVDELKNQLGSGIIMLGNVA- 793

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A+  V
Sbjct: 794 DDKVGLIAGVTKDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDAAALPSALESV 852

Query: 893 ASFLKK 898
            +++ +
Sbjct: 853 DAWIAE 858


>gi|237745661|ref|ZP_04576141.1| alanyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229377012|gb|EEO27103.1| alanyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 870

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/910 (41%), Positives = 536/910 (58%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  GH ++ SS L+P NDPTLM TN+GMV FK++F G +K  Y   
Sbjct: 1   MKSAEIREKFLSFFKAKGHTVVRSSPLVPANDPTLMLTNAGMVQFKDVFLGLDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AWDLLT  + L 
Sbjct: 61  TSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHFAWDLLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY ED+EA+ +W    GL  ++I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 PEKLWATVYQEDDEAYDIWANEIGLPKERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG P    E+G+RYIEIWNLVFMQF +  +     LP   +DTGMGLER+
Sbjct: 181 IFYDHGPEIAGGPPGSPDEDGDRYIEIWNLVFMQFNRDEQGNMTPLPSPCVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ + TG     NN  + +VI DH+R+S+F+I DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIRAAARETGTADLTNN--SLKVIADHIRASTFMIVDGLIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           ++G GYVLRRI+RRA+ +   LG T P    L+  L  EMG+AYPEL ++   ++  LR 
Sbjct: 299 SDGHGYVLRRIIRRALRHGYKLGQTRPFFYKLVEDLVKEMGAAYPELAESAGYVQRILRH 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERFG+TLD G+ +L+  L+     ++LNG+ AF LYDT+G PLD+  DI   RG+  +
Sbjct: 359 EEERFGETLDNGMKILESALAD--GTKVLNGETAFTLYDTYGFPLDLTADICRERGIT-V 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F+ A+E+Q++ ARA      +         L+     T+F+GY+ L          
Sbjct: 416 DEQGFDVAMEKQKATARASGKFKMAAM-------LEYNGEKTRFVGYERLE--------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          +  V A+ Q G  VE+ V GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 460 --------------ETGTVVALYQDGAPVEKIVEGQSGVVVLDVTPFYAESGGQVGDVGA 505

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +G  +R  + D QK    +  HH  V  G +     +   ++ + R Q   NHS THL+
Sbjct: 506 LLGQHMRFDVEDTQKIQADVAGHHGKVVAGTIAVGDKVDARVNMELRAQTMRNHSVTHLM 565

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS + PD  RFD +H+ P+T  E++ +E+ VN  I  N P   + 
Sbjct: 566 HKALRQVLGQHVAQRGSLVDPDKTRFDFSHNAPVTDDEIRQVEEIVNREIVANNPTQAQQ 625

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ +DAIA GA AL G KY D VRV+ +        S  LCGGTHVS TG+I    IVSE
Sbjct: 626 MSFDDAIAHGATALFGEKYGDVVRVLDIG------FSCELCGGTHVSRTGDIGFFKIVSE 679

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AGIRRIEA+TG  A   +     K+   A  LK     +V R+ ++ ++ + L   
Sbjct: 680 GGVAAGIRRIEAVTGLAAMYWVQEMARKVGEAAVALKTQPDELVNRIVQLQDQMKGLDRE 739

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  K +               +  V  ++ +I   D   L++ MD L+ ++++  I+L 
Sbjct: 740 LSTLKARFASSQGNDLAAKAVDVKGVKVLASLIEGADVPGLRNAMDKLKDRLKTAAIVLA 799

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + K+ K S++  +T D+  +  A +L    A+ + GG GGGRP MAQ+GG + +   +A
Sbjct: 800 SV-KDGKVSLIAGITSDMTAKIRAGELVNHVARQV-GGKGGGRPDMAQAGGSDPSALPEA 857

Query: 889 IAGVASFLKK 898
           +  V +++++
Sbjct: 858 LKSVKNWVEE 867


>gi|224584605|ref|YP_002638403.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469132|gb|ACN46962.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 876

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D  +K      H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAV-DATQKYGQAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|226945497|ref|YP_002800570.1| alanyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|226720424|gb|ACO79595.1| alanyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 874

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/911 (42%), Positives = 535/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWEFLTSPKWLK 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L   +L++TVY  D+EA+ +W +  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPAEKLWVTVYASDDEAYDIWTRTVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS+ E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFYDHGPEIWGGPPGSAEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L+ AS Q  G     +   + +V+ DH+RS SFLIADG+ 
Sbjct: 241 RISAVLQHVHSNYEIDLFQNLLAASAQAIGCA--NDGAPSLKVVADHIRSCSFLIADGVT 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG AYPEL Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVGALAAEMGDAYPELRQQRAQIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P D+  DI   R L 
Sbjct: 359 KNEEEQFAKTLEQGLKILEQDLAGLA-AKVIPGDVVFKLYDTYGFPADLTADIARERDLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + ++ QR RAR+             + SL +    T F GY+   G      
Sbjct: 418 -IDEEGFEREMQAQRERARSA------SAFGLDYNSLVKVDADTLFTGYEETFG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+ + G  VE    G++  VV D+TPFYAE+GGQ+GD 
Sbjct: 465 -----------------QGQVVALFKGGATVERLGEGEEGVVVLDRTPFYAESGGQVGDC 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G                K  G  +HH +V +G L    +L   +D   R   ++NHSATH
Sbjct: 508 GYLSDASGVRFDVRDTTKVGGAHLHHGVVAKGGLHVGQALEAQVDGSVRGATALNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + +T+ ++K++E  VN  I +N  V T
Sbjct: 568 LLHAALRRVLGEHVQQKGSLVNSQRLRFDFSHFEALTTEQIKALEALVNTEIRKNTAVET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +++ + A   GA AL G KY D VRV+S+     G  S  LCGG H   TG+I L  IV
Sbjct: 628 EVIDIDSAKKKGAMALFGEKYGDNVRVLSM-----GDFSIELCGGIHARRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AG+RRIEA+TG  A  +L   +E+LK +A  LK S+ N++ ++  + E  R+L+
Sbjct: 683 GEGGVAAGVRRIEAVTGAGALDYLNAAEEQLKEVAGLLKGSRDNLLDKLAGLLERNRQLE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +           S  ++A V  +S  +  +D K L +++D L+ K+ S +I+
Sbjct: 743 KELEQLKAKAASAAGDDLAGSAIEVAGVKVLSARLDGLDGKALLALVDQLKNKLGSAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   + K  ++  VT+D++ +  A DL + +A V+GG G GGRP MAQ GG    K D
Sbjct: 803 LGG-EFDGKVVLVAGVTQDMIGKLKAGDLMKQAAAVVGGKG-GGRPDMAQGGGSEAGKLD 860

Query: 887 QAIAGVASFLK 897
           +A+A V  F++
Sbjct: 861 EALALVRPFVE 871


>gi|227114946|ref|ZP_03828602.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 875

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/910 (42%), Positives = 543/910 (59%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG P    E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLFK LI+A  +  G         + RVI DH+RS +FLIADG++
Sbjct: 243 RVSAVLQHVNSNYDIDLFKTLIEAVAKAVGTTD--LTNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIQVMGPAAEELKKQQSVVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  + +L   + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KTEEEQFARTLERGLSLLDEEIKNLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+  QR RAR              + SL      T F GY+  +       
Sbjct: 420 -VDEEGFEAAMTAQRQRAREA------SGFGVDYNSLIRVDENTPFCGYEKTQQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V AI   G  V++  +G +  V+ ++TPFY E+GGQ+GD 
Sbjct: 467 -----------------QAKVIAIYHNGTAVDQIAAGDEAVVILNETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   + D QK  +    H   + +G LR   S+   +D Q R ++ +NHSATH
Sbjct: 510 GELKNAGVSFAVQDTQKYGQ-AIGHVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T
Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA A GA AL G KY+D VRV+++     G  S  LCGGTH S TG+I L  I+
Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALE 743

Query: 772 LI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                    +   + +       ++  V  +   +  VD K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G + E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-GTAAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|149378261|ref|ZP_01895973.1| alanyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149357458|gb|EDM45968.1| alanyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 876

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/912 (42%), Positives = 546/912 (59%), Gaps = 54/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL++F++ GH ++PSSSL+P +DPTL+FTN+GM  FK++F G+EK  Y   
Sbjct: 1   MKTAELRQAFLDYFKQQGHTIVPSSSLVPADDPTLLFTNAGMNQFKDVFLGREKRDYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT      
Sbjct: 61  TTTQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTGDDWLK 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EAF +W +  G+ AD+I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYASDDEAFDIWNQEVGVPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  + GG PGS  E+G+RYIEIWN+VFMQ+ +Q   E   LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRQADGEMLPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDL + L+ A+  + G         + RV+ DH+RS +FLI+DG++
Sbjct: 241 RITAVLQGVHSNYEIDLMQDLLNAASDILGG--VETTEASLRVVADHIRSCAFLISDGVM 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRG+VLRRI+RRA  +   LG T+P    L  AL   MG A+P+L+ ++  IE+ L
Sbjct: 299 PSNEGRGFVLRRIIRRAARHGNKLGATQPFFHKLTGALVELMGDAFPQLVSSRKQIEKVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTLD+GL LL+  ++ L   EI  GD  F LYDT+G P+D+  DI   RGL 
Sbjct: 359 LQEEEQFAKTLDKGLRLLEQDIAALESSEI-PGDTIFTLYDTYGFPVDLTNDIARERGLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   + +A+E QR RARA S          +        G+T+F GY+ + G +    
Sbjct: 418 -LDYDGYEKAMERQRERARAASKFGMDYNAAGLNIE-----GSTEFTGYEHIDGHE---- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               ++ ++  GE  + A +G +  +V ++TPFYAE+GGQ+GDT
Sbjct: 468 -------------------TIRTVIVGGEE-KAAQAGDEAILVLERTPFYAESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G R ++TD QK+     +H   V  G L   + +   ID+  R +   NHSATH
Sbjct: 508 GLLTWSGGRFKVTDTQKEGSN-HLHIGTVIEGELFPGLEVDARIDHARRERTKKNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV+Q GS + PD LRFD +H + +T  +L+ IE  VN+ I  N PV T
Sbjct: 567 LMHAALRNVLGEHVTQKGSLVDPDKLRFDFSHFEAVTPEQLREIERQVNEQILDNTPVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I + E A A GA AL G KY D VRV+S+       +S  LCGGTHV+ TG+I L  I 
Sbjct: 627 EITDMEQAQAKGAMALFGEKYGDTVRVLSMGS---DAYSVELCGGTHVARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG  A   +   ++ L+  A  +K S+ ++V +V++  +  R+L+
Sbjct: 684 SESGISSGVRRIEAVTGFGALEWVEETEQTLREAAKLVKGSRESLVEKVQQALDRNRQLE 743

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 + +L          S   +A +  ++  +   D K L    D L+ K+  G+++
Sbjct: 744 KDINALQAKLASSAGTDLASSAVDVAGLKVVASEMEGADRKALMETADQLKNKLGEGVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + ++ K +++  VT+    R  A DL +  A  +  G GGGRP MAQ GG + +K  
Sbjct: 804 LASV-EDGKVTLVAGVTKSATGRVKAGDLMKHLAAQV-DGKGGGRPDMAQGGGNDPSKLA 861

Query: 887 QAIAGVASFLKK 898
            A+AGV ++++K
Sbjct: 862 DALAGVPAWVEK 873


>gi|91792571|ref|YP_562222.1| alanyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|122968878|sp|Q12PX7|SYA_SHEDO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91714573|gb|ABE54499.1| alanyl-tRNA synthetase [Shewanella denitrificans OS217]
          Length = 874

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/909 (41%), Positives = 545/909 (59%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FL +F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y    
Sbjct: 4   TTAKLRSAFLAYFETQGHQVVDSSSLVPHNDPTLLFTNAGMNQFKDVFLGMDKRSYSRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW  LT+   L  
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFAWTFLTETLKLPT 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EAF+LW K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDDEAFELWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG P    E+G+R+IEIWN+VFMQ+ +Q       LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGAMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+FK LI  + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFKQLIAKTAEIIGVSD--LENKSLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+     L+P L + MG A   L++ ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLISVMGDAAKGLVETQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL LLD  L+ L   ++L+GD AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGLLDNALNELS-GKVLDGDTAFKLYDTYGFPVDLTADVCRERDIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     +         TQF GY  L G         
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNKQLIIDEETQFCGYKGLSG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V A+   G+ V E   GQ   VV + TPFYAE+GGQ+GD G  
Sbjct: 465 --------------EANVVALYLDGQAVNEVTQGQDAVVVLNNTPFYAESGGQVGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              GI   +TD QK  +        V  G ++    L   ++   R++  +NHS THLLH
Sbjct: 511 SAQGINFSVTDTQKFGQATGHQ-GKVLEGSIKVGTKLAAEVNKDLRQRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G+HV+Q GS + P+ LRFD  H + + +AELK +E+ VN  I  N  + T  M
Sbjct: 570 AALRQVIGTHVTQKGSLVNPERLRFDFAHFEGVKAAELKQVEELVNAQIRCNHELNTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+++VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 AIDEAKEKGAMALFGEKYDEKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q   L   A  LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAEQQAMLDEAAGLLKSDSASVVAKLKAQLDKTKQLEKEL 744

Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +L              I  V  +   +  VD   L+ + D L++K++S II+L G
Sbjct: 745 SQLKDKLAAAASADMAGDAQDINGVKVLVKKLEGVDPGSLRGLQDELKQKLKSAIILL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +K+ K +++  V+ DL  +  A +L  + A+ + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAKDGKVNLIAGVSNDLTAKVKAGELVAMVAQQV-GGKGGGRPDMAQAGGTQVENLDAAL 862

Query: 890 AGVASFLKK 898
           A  ++++ +
Sbjct: 863 ASASTWIAE 871


>gi|51595175|ref|YP_069366.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|170025588|ref|YP_001722093.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186894190|ref|YP_001871302.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|59798514|sp|Q66E68|SYA_YERPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830293|sp|B2K5X9|SYA_YERPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830296|sp|B1JJA0|SYA_YERPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51588457|emb|CAH20065.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|169752122|gb|ACA69640.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186697216|gb|ACC87845.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
          Length = 875

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/910 (43%), Positives = 553/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG      +  + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVADVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + SL     A+QF GYD ++       
Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDSASQFSGYDHVQQH----- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E  +G++  VV ++TPFY E+GGQ+GD 
Sbjct: 468 ------------------ATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +TD QK       H  I+  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFSVTDTQKYG-QAIGHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 TESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q           S   I  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 AALASVEAWV 871


>gi|153950576|ref|YP_001402195.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|205830292|sp|A7FLR7|SYA_YERP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152962071|gb|ABS49532.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
          Length = 875

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/910 (43%), Positives = 553/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG      +  + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVADVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + SL     A+QF GYD ++       
Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDSASQFSGYDHVQQH----- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E  +G++  VV ++TPFY E+GGQ+GD 
Sbjct: 468 ------------------ATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +TD QK       H  I+  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFSVTDTQKYG-QAIGHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 TESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q           S   I  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTT-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 AALASVEAWV 871


>gi|205830250|sp|Q07R87|SYA_RHOP5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 891

 Score =  906 bits (2340), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/901 (50%), Positives = 609/901 (67%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK     
Sbjct: 1   MSGVNEIRSAFLNYFGKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKE+ L
Sbjct: 61  AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EAF LWKKI+GL   KIIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 AKDRLLVTVFSEDDEAFGLWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQF+Q     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIFGGPPGSPEEDGDRFIEIWNLVFMQFDQVAPGSRNPLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+IDLF+ LI+A   +TG   +G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYEIDLFQALIRAIADLTGADPQGEQKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM + +LLG  EPLM  L+ AL  EMG AYPEL++A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAENLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L + ++ +G+ AF LYDT+G PLD+ QD L ARG   +DI SF 
Sbjct: 361 KTLERGLGILDEKSNTLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARG-ISVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ ARA   G G    E +WF L+EK GAT+F+GY+                  
Sbjct: 420 DAMDRQRALARASWTGSGDTAAETVWFGLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + V A+V+ G++V++  +G    +V +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 462 -----TETAEAEVAALVKDGQVVDQLKTGDSGAIVLNQTPFYAESGGQVGDTGVLSADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++T+ QKKA  +FVH   VE G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTETQKKAGDLFVHLGTVEEGTIKLATALALNVDHDRRGAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPI++ EL+ +ED  N+++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFMHPKPISAEELRRVEDIANEVVLENDEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVV +         +    S  LCGGTHV  TG+I L+ +  E
Sbjct: 637 RDAGARALFGEKYGDEVRVVVMGKGSRDRGANALGWSVELCGGTHVKRTGDIGLISVTGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG++AR          K  A+ L+ S  ++  R+  + +E +KL+  
Sbjct: 697 SAVASGVRRIEALTGRQARQSANAAIATAKQAAAELRTSVDDMPARIAALMDERKKLERE 756

Query: 774 HAKRKLQLNVEDLS----------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            A+ + +L +                ++  V  M+  +  V+ K+LKS++D  +K++ SG
Sbjct: 757 LAEARKKLAMGGGGAAGAANGASDVREVGGVKLMARAVEGVEIKDLKSLVDQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I L+  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 817 VIALIATSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|330889188|gb|EGH21849.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. mori str. 301020]
          Length = 874

 Score =  906 bits (2340), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +  G GGGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVS-GKGGGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|299067646|emb|CBJ38855.1| alanyl-tRNA synthetase [Ralstonia solanacearum CMR15]
          Length = 888

 Score =  906 bits (2340), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/917 (41%), Positives = 536/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 9   MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRSYTRA 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 69  TSVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 128

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 129 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 188

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  I GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 189 IFYDHGPEIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 248

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 249 GLERLAAILQHVHSNYEIDLFEALIAAASRETNTKDLSNN--SLRVIADHIRACSFLIVD 306

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL  A+  + 
Sbjct: 307 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVVQMGEAYPELRDARDRVV 366

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + LR+E+ RF +T++ G+ +LDG L  L      +L+G++AFKL+DT+G PLD+ QD+  
Sbjct: 367 DVLRTEEARFFETIEHGMSILDGALGELKASGANMLDGELAFKLHDTYGFPLDLTQDVCR 426

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 +D  +F+ A+  QR +ARA      +  T      L      T F GYD L   
Sbjct: 427 E-NDVIVDEAAFDAAMNRQREQARAAGKFKMAVGT------LDYTGDKTTFHGYDQLVRE 479

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+    GQ   VV D TPFYAE+GG
Sbjct: 480 ----------------------TARVTALFVDGASVDAMQPGQTGVVVLDHTPFYAESGG 517

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D QK    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 518 QVGDQGTLKAATVWFDVADTQKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAARRARTMRN 577

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG+HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 578 HSATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 637

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                ++M  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 638 AATNAQVMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 691

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 692 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQ 751

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K++
Sbjct: 752 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 811

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  +S + K +++  VT D   R  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 812 TAAIVLGSVS-DGKVALIAGVTADATARIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 869

Query: 882 GNKADQAIAGVASFLKK 898
            +K  QA+AGV +++++
Sbjct: 870 PDKLPQALAGVTAWVQQ 886


>gi|153829905|ref|ZP_01982572.1| alanyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|148874593|gb|EDL72728.1| alanyl-tRNA synthetase [Vibrio cholerae 623-39]
          Length = 860

 Score =  906 bits (2340), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/911 (42%), Positives = 545/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++ +G+L T   +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  +L  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|262164028|ref|ZP_06031767.1| alanyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262027556|gb|EEY46222.1| alanyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 860

 Score =  906 bits (2340), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/911 (42%), Positives = 541/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNEALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDETGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ I  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D  K       HH ++ +G+L     +   +D Q R  +S+NHSATHL
Sbjct: 510 VLKTEAGVFHVEDTHKLGN-AIAHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+ E+K +E  VN  I +N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTATEIKEVERLVNQEIRRNHSIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  ++  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYIEAQQA--------------QHDAKVVEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|74316571|ref|YP_314311.1| alanyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259]
 gi|74056066|gb|AAZ96506.1| alanyl-tRNA synthetase, class IIc [Thiobacillus denitrificans ATCC
           25259]
          Length = 886

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/910 (40%), Positives = 526/910 (57%), Gaps = 55/910 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GMV FK++FTGQ+   Y  
Sbjct: 15  MKSSA-IRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSR 73

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L
Sbjct: 74  AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKL 133

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W    G+   +I+RI  N       DNFW+M +TGPCGPC+
Sbjct: 134 PSEKLWVTVYAEDDEAYDIWHNDVGVPKARIVRIGDNKGARYASDNFWAMGDTGPCGPCT 193

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  + GG P    E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER
Sbjct: 194 EIFYDHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPLPKPSVDTGMGLER 253

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ V+Q   +NY+IDLF+ LI A+ + T     GNN  + +VI DH+R+ SFLI DG++P
Sbjct: 254 ISAVMQHVHSNYEIDLFQALIAAAARETNTHDLGNN--SLKVIADHIRACSFLIVDGVIP 311

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRI+RRA+ +   LG        ++P L   MG AYPEL++A+  + + LR
Sbjct: 312 GNEGRGYVLRRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILR 371

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERF +T++ G+ +L+  L  L    + +G++AFKL+DT+G PLD+  DI    G   
Sbjct: 372 QEEERFFETIEHGMGILESELKKLVAGGVFDGELAFKLHDTYGFPLDLTADICREAG-VA 430

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  Q+++AR           +           AT F GYD L         
Sbjct: 431 VDTAAFDAAMARQKAQARGAGKFKLGAGLD-------YAGEATTFHGYDTL--------- 474

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G
Sbjct: 475 --------------AREASVLALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRG 520

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D  K    +F HH +V+ G L    S++  +D   R +   NHS THL
Sbjct: 521 TLQSKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVLARVDETARARTMRNHSVTHL 580

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG HV Q GS +  +  RFD     P+T+A+++ +E  VN  I  N P   R
Sbjct: 581 MHKALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQAR 640

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  EDA  +GA  L G KY D VRV+ +        S  LCGGTHV+ TG+I L  IVS
Sbjct: 641 VMGIEDAQKTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVARTGDIGLFKIVS 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RR+EAITG  A ++L  ++++++  A+ LK     +  ++ +  +  R L+ 
Sbjct: 695 ESGVAAGVRRVEAITGDNALAYLQAREQEIQQAAAALKAHPAELGAKLAQTLDHVRALEK 754

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L              I  V  ++  +  +D+K L+   D L+ K++S  ++L
Sbjct: 755 DLERLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETADKLRDKLKSCALVL 814

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   + K S++  VT D+  +  A +L  + A  + GG GGG+P +A +GG +      
Sbjct: 815 -GTVADGKVSLIAAVTPDVTAKIKAGELVNVVAAQV-GGKGGGKPDLAMAGGTDPGALPA 872

Query: 888 AIAGVASFLK 897
           A+A V ++++
Sbjct: 873 ALASVEAWVQ 882


>gi|2500957|sp|P70865|SYA_BARBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1568622|gb|AAB09037.1| AlaS [Bartonella bacilliformis]
          Length = 886

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/909 (51%), Positives = 631/909 (69%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+TFL++F +NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MNSVNNIRSTFLDYFHRNGHEVLSSSPLVPRNDPTLMFTNAGMVDFKNVFTGLEKHSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF  YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSNYFKEEAIFYAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY +D+ A  LW+KISGLS +KIIRI TNDNFW M +TGPCGPCSEIF+D G
Sbjct: 121 SKDKLLVTVYHDDDVAAGLWRKISGLSEEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ +K++R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DKIWGGPPGSADEDGDRFIEIWNLVFMQYEQLSKEKRIELPQPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI AS+++ G+K  G+   +HRVI DHLRSS+FLIADGI+P+NEGRGY
Sbjct: 241 VHDNYDIDLFRTLIHASQEIIGVKATGDFFASHRVIADHLRSSAFLIADGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  + LM  L+P L +EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGSKDLLMWRLVPVLISEMGQAYPELVRAESLISEILKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   +HL + +  NG+VAFKLYDT+G PLD+ QD L  RG   +D+ +F+
Sbjct: 361 KTLERGLGLLNEASTHLEEGDYFNGEVAFKLYDTYGFPLDLTQDALRRRG-ISVDVDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ Q++ ARA+  G G   TE +WFS++++ GAT+F+GY+                  
Sbjct: 420 KAMKRQKAEARANWSGSGDCVTETVWFSIRDQVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+++ GE+V+    GQK  +V +QTPFY E+GGQ+GD+G   G   
Sbjct: 462 -----TEKAEGIITALIRDGEVVDHIDLGQKAMIVVNQTPFYGESGGQVGDSGIISGANF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKK + +F+H   ++ G  +    + L +D   RR++  NHSATHLLH +L  
Sbjct: 517 IFEVHDTQKKGDNVFIHIGEIKTGQAKKHDCVELIVDSARRRKIRANHSATHLLHESLRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LGSHV Q GS ++PD LRFD +H K I+S ELK IED  NDI+ QN  V TR+M  +DA
Sbjct: 577 TLGSHVVQKGSFVSPDRLRFDFSHPKSISSEELKKIEDLANDIVLQNSKVTTRLMAIDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRV+S+             S  LCGGTHV  TG+I L++I+SE+
Sbjct: 637 IAEGAMALFGEKYGDEVRVISMGNNLEQTGSKKWWSIELCGGTHVQRTGDIGLIHIISET 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+T   AR +L GQD ++  +A  LK S  +V  RV+ + +E RKL+   
Sbjct: 697 SVAAGVRRIEALTATAARLYLHGQDRRVYEIAGLLKTSPADVQERVQTLLDERRKLEKEL 756

Query: 775 --AKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +++K+ LN   ++       I  ++FM  ++S +  K+LK+++D+ +KKI SG++  +
Sbjct: 757 NDSRKKIALNGGSVNSQGDIQTINGISFMGGVVSNILPKDLKALVDSGKKKIGSGVVAFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S++ K S ++ VT+DL D  NAVDL R+ +  LGG GGGGR  MAQ+GG  G KAD+A
Sbjct: 817 SVSEDGKGSAVVGVTDDLTDTLNAVDLVRIISVTLGGQGGGGRRDMAQAGGSEGGKADEA 876

Query: 889 IAGVASFLK 897
           +  +   LK
Sbjct: 877 LVALKDSLK 885


>gi|329849339|ref|ZP_08264185.1| alanyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
 gi|328841250|gb|EGF90820.1| alanyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
          Length = 878

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 438/903 (48%), Positives = 580/903 (64%), Gaps = 32/903 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR TFL++F +N HE++ SSSL+P NDPTLMFTN+GMV FKN+FTG E   Y+ 
Sbjct: 1   MPSLNQIRQTFLDYFARNDHEVVASSSLVPQNDPTLMFTNAGMVQFKNVFTGAETRPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW LLTK++ L
Sbjct: 61  ATTSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIEHAWTLLTKDYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  R+  TVY +D+EAF+LWKKI+GL   +I RI  +DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 NPDRMMATVYIDDDEAFELWKKIAGLPESRIARIAGSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG P    E+G+R++EIWNLVFMQF+QQ    R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGTPEEDGDRFVEIWNLVFMQFDQQPDGTRVNLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLFK+LI AS + TG+  EG+++ +HRVI DHLRSSSFLIADG+ P+NEGRGY
Sbjct: 241 VHNNYDIDLFKNLISASVEATGVAAEGDSLPSHRVIADHLRSSSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPL+  L P L  EMG  Y EL +A+  I ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGSQEPLLHRLAPTLVAEMGGHYGELKRAEAAIVETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RG+ LLD  +  L   ++L G+VAFKLYDT+G PLD+ QD + A+GL+ +++  F 
Sbjct: 361 RTLGRGMTLLDEAVRDLKSGDMLEGEVAFKLYDTYGFPLDLTQDAVRAKGLS-VNVAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++E Q+ R R    G G   T   WF++KE  GA++F GYD L                
Sbjct: 420 ASMEAQKQRGRDAWTGSGEKATAAEWFAIKEAIGASEFTGYDHL---------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V+AIV  GE +EEA++G  V +VF+++PFY E GGQ GD G       
Sbjct: 464 -------SAQGHVQAIVLDGETIEEALTGDTVSMVFEKSPFYPEGGGQAGDVGTVDFLHG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  + D Q++A  + VH   +  G ++      L +D   R+    NHSA HL+H AL  
Sbjct: 517 KGNVLDTQRQAGDLIVHRIEITEGRVKVGDKAELHVDAGKRKTTRSNHSAAHLVHAALRH 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H  P+T  EL  IE  VN ++ QN    T++M  E A
Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHGGPLTVDELARIEAEVNAVVLQNAAAATKLMTPEAA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           I +GA AL G KY D VRV+++       G +S  LCGGTHV+ TG+I L  IVSES I 
Sbjct: 637 IEAGAIALFGEKYGDEVRVLALGQALDGQGDYSVELCGGTHVARTGDIALFKIVSESGIA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG+ AR  L+ Q    +SLA   KV    V  RVE +  E ++L+   A+ 
Sbjct: 697 AGVRRIEAVTGEAARQFLLEQAGVARSLADQFKVPVSQVEARVEALVAERKRLEKELAEA 756

Query: 778 KLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           K  L V          +I     ++ ++  V  K+L+ + +  +K++ SGI+ LVG   +
Sbjct: 757 KRALAVGGGGAASGPEEINGTKLIARVLEGVGGKDLRPLAEDFRKQVGSGIVALVG-KLD 815

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            KA+V + VT DL  R+NA +LA+ +   +GG G GG+P  AQ G P+ +KAD  +  V 
Sbjct: 816 GKAAVTVTVTADLTGRYNAAELAKAAVIAMGGQGAGGKPDFAQGGAPDDSKADAGLEAVK 875

Query: 894 SFL 896
           + +
Sbjct: 876 ALI 878


>gi|327483364|gb|AEA77771.1| Alanyl-tRNA synthetase [Vibrio cholerae LMA3894-4]
          Length = 860

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/911 (42%), Positives = 544/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+ +L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGSLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++ +G+L T   +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  +L  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|291614561|ref|YP_003524718.1| alanyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291584673|gb|ADE12331.1| alanyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 873

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/911 (41%), Positives = 534/911 (58%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL++F   GH ++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKSSEIRQKFLDYFASKGHTVVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT+ F L 
Sbjct: 61  ASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKYAWELLTEVFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +LY+TVY ED+EA+ +W K  GL+AD++IRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KDKLYVTVYAEDDEAYDIWTKKVGLAADRVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  IPGGLP    E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFYDHGAHIPGGLPGTPEEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + VLQ    NY+IDLF+ LI+A+ + T       +  + RV+ DH+R+ SFLIADG++P 
Sbjct: 241 SAVLQHVHANYEIDLFQALIKAAARETNQT--NLDQPSLRVLADHIRACSFLIADGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  E     ++P L  +MGSAYPEL+  ++ ++  L+ 
Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGAREAFFYKMVPDLVEQMGSAYPELVAEQVRVKGILKL 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF  T++ G+ +L+  L+ + K   ++ NG+ AFKL+DT+G PLD+  DI   RG+ 
Sbjct: 359 EEERFFATIEHGMAILEADLAEMEKAGGKVFNGETAFKLHDTYGFPLDLTADICRERGVK 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D  +FN A+  Q+ +ARA      +        +L+    AT F GY+ L        
Sbjct: 419 VDD-AAFNAAMARQKEQARAAGKFKMAA-------NLEYSGPATTFHGYESLEH------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G  V E   G    VV D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------KGNILALYKDGVEVNELNEGDLGVVVLDDTPFYAESGGQVGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK    +F HH +V+ G L     +   +D   R +   NHSATH
Sbjct: 508 GELRSVHGIFAVEDTQKIQASVFGHHGVVKTGKLSVGNGVTARVDVAARSRTMRNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H++P++ AE++ +E  VN  I  N    +
Sbjct: 568 LMHKALREVLGTHVQQKGSQVDADKTRFDFVHTQPMSDAEIRKVEAIVNAEILSNAECQS 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  E+A  +GA  L G KY D VRV+++        S  LCGGTHV  TG+I L  IV
Sbjct: 628 RVMPIEEAQKTGAMMLFGEKYGDVVRVLNIGS------SIELCGGTHVKRTGDIGLFKIV 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES + AG+RR+EA+TG+ A + +  Q+ +L+ +A  +K        R+ +I +  + L+
Sbjct: 682 AESGVAAGVRRVEAVTGEGALALVQQQEVQLQQVADAVKAQPQEAAARITQILDNVKSLE 741

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L              ++ V  ++  +   D+  L+  +D L+ K++S  ++
Sbjct: 742 KELAALKSKLASAQGDELLAQAQDVSGVKVLAAKLDGADAAVLRETLDKLKDKLKSAAVV 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 802 LASVA-EGKVSLIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPEHLA 859

Query: 887 QAIAGVASFLK 897
           +A+A V  ++K
Sbjct: 860 KALASVPDWVK 870


>gi|325983477|ref|YP_004295879.1| alanyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325532996|gb|ADZ27717.1| alanyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 865

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/902 (42%), Positives = 536/902 (59%), Gaps = 48/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FLEFF+  GH ++ SS L+P NDPTL+FTN+GMV FK+IF GQ+K  Y   
Sbjct: 1   MKSSEIRQKFLEFFESQGHTVVSSSPLVPGNDPTLLFTNAGMVQFKDIFLGQDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AWD LT   ++ 
Sbjct: 61  VSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAILFAWDFLTHTLNIP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L++TVY ED+EA  +W    G+   +I+RI T DNFW M +TGPCGPCSEIF+D G 
Sbjct: 121 HEKLWVTVYAEDDEAAGIWLNEVGVEPSRIVRIATMDNFWQMGDTGPCGPCSEIFYDHGA 180

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS   +G+RYIEIWNLVFMQ+ + +      LPK S+DTGMGLER++ V+Q  
Sbjct: 181 DVQGGPPGSADADGDRYIEIWNLVFMQYNRDSAGVLHPLPKPSVDTGMGLERISAVMQHV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLF+ LI+A+ +VT       N  + +VI DH+R+ SFLIADG++P +EGRGYV
Sbjct: 241 HSNYDIDLFQSLIKAAARVTNTS--NLNDNSLKVIADHIRACSFLIADGVIPGSEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +P    L+  L   MG AYPEL  AK  +   L  E+ERF +
Sbjct: 299 LRRIIRRAIRHGYKLGQKQPFFHQLVEDLDQVMGQAYPELTAAKARVAAVLLQEEERFAE 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+ G+ +L+  LS     +IL+G+ AF+LYDT G P+D+  DI   RG+  +D   F Q
Sbjct: 359 TLENGMQILETALSQ--NIQILDGETAFRLYDTFGFPIDLTADIARERGIT-VDYAGFEQ 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+  QR +ARA S              ++     T F GY+ L+                
Sbjct: 416 AMARQREQARAASKFTLQEG-------IEYSGSQTTFYGYETLQH--------------- 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      + A+ +QG  V+   +G +  VV DQTPFYAE+GGQ+GD G  +     
Sbjct: 454 --------EGQILALYKQGSAVDSIEAGDEAVVVLDQTPFYAESGGQVGDCGELLAANGI 505

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++TD QK   G+F H   +  G L  + ++   ++ QNR  ++ NHSATHLLH AL  +
Sbjct: 506 FEVTDTQKIQAGVFGHKGKLHSGRLMIKDTVHAQVNAQNRISIANNHSATHLLHAALREV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+HV+Q GS +  +  RFD +H+ P+T+ ++++IE  VND I  N  V    M  +DAI
Sbjct: 566 LGTHVTQKGSLVDANRTRFDFSHNVPLTADDIRAIERLVNDQIRNNCIVEAATMKYDDAI 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+D VRV+ +     G  S+ LCGGTHV   G+I L  IV+ES + AGI
Sbjct: 626 KRGAMALFGEKYSDVVRVIGM-----GEFSTELCGGTHVPQVGQIGLFKIVAESGVAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RR+EA+TG+ A  ++  ++ +L  +A  LK +   V  ++ +I +  R  +   A+ K +
Sbjct: 681 RRVEAVTGKAAIDYVQQREAQLLEIAQTLKANPQEVTQKIAQIIDNVRHTERELARLKTK 740

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L              +  V  ++  +   D+K L+  +D L+ K+++  I+L     + K
Sbjct: 741 LASSQGADLASQAQDVNGVKVLAVNLENADAKTLRETLDQLKDKLKTCTIVL-STVADGK 799

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            +++  V+ DL DR  A +L    A+ + GG GGGR  MAQ+GG    +   A+ GV  +
Sbjct: 800 VTLIAGVSADLTDRIKAGELVNFVAQQV-GGKGGGRADMAQAGGTQPEQLPGALGGVKDW 858

Query: 896 LK 897
           ++
Sbjct: 859 VE 860


>gi|149927912|ref|ZP_01916162.1| alanyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149823351|gb|EDM82584.1| alanyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 878

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 56/914 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             V+ IR  FL+FF   GH  + SSSL+P NDPTL+FTNSGMV FK++FTG++K  Y   
Sbjct: 1   MKVADIREKFLDFFASKGHTKVASSSLVPGNDPTLLFTNSGMVQFKDVFTGKDKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+LLT  + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIQYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             RLY+TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPC+E
Sbjct: 121 PERLYVTVYQEDDEAYNIWNKQVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIE+WNLVFMQF++        LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEVWGGPPGSEQEDGDRYIEVWNLVFMQFDRTADGVLHPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A VLQ   +NY+IDLF+ LI+A+ +    +         + RVI DH+R+ SFL+ DG++
Sbjct: 241 AAVLQHVHSNYEIDLFQTLIKAAAREVTAQGNAVELTNNSLRVIADHIRACSFLVVDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRI+RRA+ +   LG  +P    L+  L +EMG AYPEL +A   ++  L
Sbjct: 301 PGNEGRGYVLRRIIRRAIRHGYKLGCRKPFFNALVGDLVSEMGEAYPELAKAAAQVQSIL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ERF +T++ G+ +LD  L  L K  +L+G+ AFKL+DT+G PLD+  D+   R ++
Sbjct: 361 KAEEERFFETIENGMAILDSALGALPKGGMLDGETAFKLHDTYGFPLDLTADVCREREMS 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+ +Q+ +ARA           K+   L      T+F GYD L        
Sbjct: 421 -VDEAAFDEAMNKQKQQARAAGKF-------KMDADLAYSGVVTEFKGYDALE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            ++ + AI   G  V    +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ---------------VANATITAIYVNGTSVNSIAAGQQGVVVLDQTPFYAESGGQVGDQ 510

Query: 532 GCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G            ++ D QK    +F HH  +  G L+   ++   +D   R +   NHS
Sbjct: 511 GEISNGSACLNLFRVLDTQKIQANVFGHHGELVTGELKVGDAVGAQVDQYQRNRTIRNHS 570

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LG HVSQ GS +  +  RFD  H   +T  ++  +E  VN+ I  N  
Sbjct: 571 ATHLMHKALREVLGDHVSQKGSLVDAEKTRFDFAHHSAMTPEQIAQVERIVNEEILANAE 630

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              RIM+ E A ++GA  L G KY D VRV+ +        S  LCGGTHV  TG+I L 
Sbjct: 631 TQARIMDIESAKSAGAMMLFGEKYGDTVRVLDIGS------SRELCGGTHVQRTGDIGLF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES + AGIRR+EA TG  A         +++++A  L+V       ++ +I ++ +
Sbjct: 685 KITSESGVAAGIRRVEATTGLGAMEFAQKAQAQVEAIAQSLRVPATEATAKIGQIMDQVK 744

Query: 769 KLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L+    + K +L              I  V  ++  +   D K+L+   D L+ K+ + 
Sbjct: 745 NLEKELDRLKSKLAASQGDDLAGQAVDIDGVKVLAAKLEGADVKQLREAADKLRDKLGNA 804

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            ++L  +  E K S++  V++D   +  A DL    A+ + GG GGGRP MAQ+GG    
Sbjct: 805 ALVLATVL-EGKVSLIASVSKDATAKVKAGDLVNFVAQQV-GGKGGGRPDMAQAGGTQPE 862

Query: 884 KADQAIAGVASFLK 897
             D A+A V  ++K
Sbjct: 863 NLDAALASVVDWVK 876


>gi|15640567|ref|NP_230196.1| alanyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590679|ref|ZP_01678012.1| alanyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121728567|ref|ZP_01681589.1| alanyl-tRNA synthetase [Vibrio cholerae V52]
 gi|153819108|ref|ZP_01971775.1| alanyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|153823946|ref|ZP_01976613.1| alanyl-tRNA synthetase [Vibrio cholerae B33]
 gi|227080728|ref|YP_002809279.1| alanyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229507157|ref|ZP_04396663.1| alanyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229508981|ref|ZP_04398469.1| alanyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229519648|ref|ZP_04409091.1| alanyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229606165|ref|YP_002876813.1| alanyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254850784|ref|ZP_05240134.1| alanyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255744228|ref|ZP_05418181.1| alanyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|12644031|sp|Q56648|SYA_VIBCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|9654973|gb|AAF93713.1| alanyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547465|gb|EAX57573.1| alanyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121629179|gb|EAX61620.1| alanyl-tRNA synthetase [Vibrio cholerae V52]
 gi|126510340|gb|EAZ72934.1| alanyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|126518530|gb|EAZ75753.1| alanyl-tRNA synthetase [Vibrio cholerae B33]
 gi|227008616|gb|ACP04828.1| alanyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229344337|gb|EEO09312.1| alanyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229353906|gb|EEO18840.1| alanyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229355902|gb|EEO20822.1| alanyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229368820|gb|ACQ59243.1| alanyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254846489|gb|EET24903.1| alanyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255738168|gb|EET93560.1| alanyl-tRNA synthetase [Vibrio cholera CIRS 101]
          Length = 860

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/911 (42%), Positives = 545/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++ +G+L T   +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  +L  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|153826924|ref|ZP_01979591.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|254291229|ref|ZP_04962025.1| alanyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|149739227|gb|EDM53495.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|150422923|gb|EDN14874.1| alanyl-tRNA synthetase [Vibrio cholerae AM-19226]
          Length = 860

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/911 (42%), Positives = 543/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++ +G+L T   +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  +L  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|147675089|ref|YP_001216045.1| alanyl-tRNA synthetase [Vibrio cholerae O395]
 gi|229520840|ref|ZP_04410262.1| alanyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|262169855|ref|ZP_06037545.1| alanyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|205830284|sp|A5F9B7|SYA_VIBC3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146316972|gb|ABQ21511.1| alanyl-tRNA synthetase [Vibrio cholerae O395]
 gi|227012371|gb|ACP08581.1| alanyl-tRNA synthetase [Vibrio cholerae O395]
 gi|229342073|gb|EEO07069.1| alanyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|262021589|gb|EEY40300.1| alanyl-tRNA synthetase [Vibrio cholerae RC27]
          Length = 860

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/911 (42%), Positives = 545/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++ +G+L T   +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  +L  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|197249925|ref|YP_002147723.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197213628|gb|ACH51025.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 876

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/895 (43%), Positives = 555/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERKIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   + Q+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEVINAEQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|115523616|ref|YP_780527.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|115517563|gb|ABJ05547.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
          Length = 893

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/901 (50%), Positives = 609/901 (67%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK     
Sbjct: 3   MSGVNEIRSAFLNYFGKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANPR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKE+ L
Sbjct: 63  AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEYGL 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EAF LWKKI+GL   KIIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 123 AKDRLLVTVFSEDDEAFGLWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 182

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQF+Q     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 183 DHIFGGPPGSPEEDGDRFIEIWNLVFMQFDQVAPGSRNPLPKPSIDTGMGLERIAAVLQG 242

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+IDLF+ LI+A   +TG   +G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 243 KHDNYEIDLFQALIRAIADLTGADPQGEQKASLRVIADHLRASSFLIADGVLPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM + +LLG  EPLM  L+ AL  EMG AYPEL++A+ LIEETLR E+ RF 
Sbjct: 303 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAENLIEETLRLEETRFR 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L + ++ +G+ AF LYDT+G PLD+ QD L ARG   +DI SF 
Sbjct: 363 KTLERGLGILDEKSNTLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARG-ISVDIASFT 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ ARA   G G    E +WF L+EK GAT+F+GY+                  
Sbjct: 422 DAMDRQRALARASWTGSGDTAAETVWFGLREKLGATEFLGYE------------------ 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + V A+V+ G++V++  +G    +V +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 464 -----TETAEAEVAALVKDGQVVDQLKTGDSGAIVLNQTPFYAESGGQVGDTGVLSADGV 518

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++T+ QKKA  +FVH   VE G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 519 RFRVTETQKKAGDLFVHLGTVEEGTIKLATALALNVDHDRRGAIRANHSATHLLHEALRQ 578

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPI++ EL+ +ED  N+++ +N  V TR+M  +DA
Sbjct: 579 VLGDHIAQKGSLVAPDRLRFDFMHPKPISAEELRRVEDIANEVVLENDEVTTRLMAVDDA 638

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVV +         +    S  LCGGTHV  TG+I L+ +  E
Sbjct: 639 RDAGARALFGEKYGDEVRVVVMGKGSRDRGANALGWSVELCGGTHVKRTGDIGLISVTGE 698

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG++AR          K  A+ L+ S  ++  R+  + +E +KL+  
Sbjct: 699 SAVASGVRRIEALTGRQARQSANAAIATAKQAAAELRTSVDDMPARIAALMDERKKLERE 758

Query: 774 HAKRKLQLNVEDLS----------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            A+ + +L +                ++  V  M+  +  V+ K+LKS++D  +K++ SG
Sbjct: 759 LAEARKKLAMGGGGAAGAANGASDVREVGGVKLMARAVEGVEIKDLKSLVDQGKKQLGSG 818

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I L+  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 819 VIALIATSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 878

Query: 884 K 884
           K
Sbjct: 879 K 879


>gi|317484483|ref|ZP_07943393.1| tRNA synthetase class II [Bilophila wadsworthia 3_1_6]
 gi|316924259|gb|EFV45435.1| tRNA synthetase class II [Bilophila wadsworthia 3_1_6]
          Length = 884

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/909 (43%), Positives = 530/909 (58%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLE+F+K+GH  + SSSLIP +DP+L+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MLTANEIRHRFLEYFKKHGHTEVASSSLIPRDDPSLLFTNAGMVQFKKIFCGQEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDLDNVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  +T++  L
Sbjct: 61  ATTSQKCLRVGGKHNDLDNVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFITEDLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLYITVY +D+EAF+LW+K++G++ ++I R+   DNFWSM +TGPCGPCSEI FDQG
Sbjct: 121 PKDRLYITVYKDDDEAFELWQKVAGVAPERIFRLGEKDNFWSMGDTGPCGPCSEIHFDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +  G        + +R++EIWNLVFMQFEQ     R  LP+ SIDTGMGLER+A V Q
Sbjct: 181 ADMACGPDCGIGKCDCDRFLEIWNLVFMQFEQLADGSRVPLPRPSIDTGMGLERIAGVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +NYD DLF+  I    ++ G++Y  N  N    RVI DH R+ +F+IADGILP+NEG
Sbjct: 241 GVRSNYDTDLFQVFINYMAELAGVRYRDNADNDTALRVIADHSRAIAFMIADGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RL+G  EP +      +   MG  YPEL      +    R E+E
Sbjct: 301 RGYVLRRLIRRAFRFGRLMGMQEPFLYKTALKVVEVMGEDYPELRARADFMARVTREEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TLD+GL +L+  +  L    ++I+ G+ AFKLYDT+G PLDI+ D+   RG    D
Sbjct: 361 RFSSTLDKGLSMLEEEMDALADKGEKIIPGETAFKLYDTYGFPLDIVNDVAEKRGFKA-D 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN+ + +Q+ RARA   G G       +  L E    ++F GY  L G         
Sbjct: 420 EAGFNEYMHQQKQRARAAWKGSGEKDIASRFQGLLEDGLKSEFFGYTALTGVGR------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                           +V  +   G  VE   SG    VV DQTPFY  +GGQ GDTG  
Sbjct: 474 ----------------VVALLDGDGLPVEALPSGSLGYVVTDQTPFYGASGGQCGDTGLL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                  ++ D  K +  + VHH  V+ G L ++  +VLT+    R   + NH+ THLLH
Sbjct: 518 TAPAGSAKVLDTLKPSADLTVHHIEVDGGTLLSDQEVVLTVTESIRLDAARNHTCTHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +TPD LRFD +H  P+T  EL ++E +VN  I  + P+  ++M
Sbjct: 578 AALRRVLGDHVRQAGSLVTPDRLRFDFSHIAPMTPEELAAVERDVNAAIMADYPLTAKLM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            ++ AI  GA AL G KY D VRVV++   D    S  LCGGTH+ STG+     I+SES
Sbjct: 638 GQQAAIDMGAMALFGEKYGDTVRVVTIGNPD-HTESVELCGGTHLHSTGQAGSFVILSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG RRIEA TG  A  H     E+L  LA+ LK   G +  +++ + +E R L+   
Sbjct: 697 GIAAGTRRIEAATGWNALKHARAMSEELHQLAAMLKTQPGGLAAKLDGLQKENRGLRKDL 756

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K   Q              +I  V  ++  +   + K ++ +MD ++ K+ SG+  +  
Sbjct: 757 EKAAAQAASGQGGDLMSKVVEINGVKVLAAKLDASNIKAMRELMDDIRSKMPSGVACIAA 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              E K S+++ V++DL  RF A  L +  A  +  G GGGRP  AQ+GG N    D+A+
Sbjct: 817 PVDEGKVSMILYVSKDLHGRFTAPALIKEVAAPIA-GSGGGRPDQAQAGGTNPAGIDEAM 875

Query: 890 AGVASFLKK 898
             + + + +
Sbjct: 876 DVLKAKIGE 884


>gi|153802555|ref|ZP_01957141.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|124121918|gb|EAY40661.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-3]
          Length = 860

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/911 (42%), Positives = 542/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRTYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L    +L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GLVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++ +G+L T   +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  +L  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|229525206|ref|ZP_04414611.1| alanyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229338787|gb|EEO03804.1| alanyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
          Length = 860

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/911 (42%), Positives = 543/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 VSAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++ +G+L T   +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  +L  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|262172368|ref|ZP_06040046.1| alanyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|261893444|gb|EEY39430.1| alanyl-tRNA synthetase [Vibrio mimicus MB-451]
          Length = 860

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/911 (42%), Positives = 542/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNEALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDETGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ I  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D  K       HH ++ +G+L     +   +D Q R  +S+NHSATHL
Sbjct: 510 VLKTEAGVFHVEDTHKLGN-AIAHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I +N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHSIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  ++  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYIEAQQA--------------QHDAKVVEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ S       +IA VN +   ++  D+K L+ ++D ++ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESSGLINQVKQIAGVNVLVAELNGADNKALRGMVDDIKNQLGSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|50122289|ref|YP_051456.1| alanyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|59798525|sp|Q6D1T0|SYA_ERWCT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49612815|emb|CAG76265.1| alanyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 875

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/910 (42%), Positives = 543/910 (59%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYGIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD GE I GG P    E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLFK LI A  +  G         + RVI DH+RS +FLI+DG++
Sbjct: 243 RVSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTD--LTNKSLRVIADHIRSCAFLISDGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIEVMGPAAEELKKQQSVVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F +TL+RGL LLD  + +L   + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KMEEEQFARTLERGLSLLDEEIKNLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+  QR RAR       +      + SL      T F GY+  +       
Sbjct: 420 -VDEEGFEAAMTAQRQRAR------DASGFGVDYNSLIRVDENTPFCGYEKTQQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V++  +G +  V+ ++TPFY E+GGQ+GD 
Sbjct: 467 -----------------QAKVIALYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   + D QK  +    H   + +G+LR   S+   +D Q R ++ +NHSATH
Sbjct: 510 GELKNAGVSFAVQDTQKYGQ-AIGHVGKLTQGMLRVNDSVDANVDSQRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T
Sbjct: 569 LLHAALRQVLGVHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA A GA AL G KY+D VRV+S+     G  S  LCGGTH S TG+I L  I+
Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLSM-----GDFSIELCGGTHASRTGDIGLFQII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRSRALE 743

Query: 772 LI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                    +   + +       +I  V  +   +  VD K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKAQQAAQESSSLSGKATEINGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G + E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-GTAAEGRVSLISGVTKDLTDRVKAGELVGFVAQQV-GGKGGGRPDMAQAGGSDVSALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|110633619|ref|YP_673827.1| alanyl-tRNA synthetase [Mesorhizobium sp. BNC1]
 gi|110284603|gb|ABG62662.1| alanyl-tRNA synthetase [Chelativorans sp. BNC1]
          Length = 909

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/894 (52%), Positives = 623/894 (69%), Gaps = 37/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL+FF+KNGHE++ S  L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 23  MSGVNDIRSAFLDFFKKNGHEVVASGPLVPRNDPTLMFTNAGMVQFKNVFTGMETRPYNR 82

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L
Sbjct: 83  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIELAWNLVTKEFGL 142

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D +RL +TVY  D+EA   W+KI+GL  ++IIRI T+DNFW+M +TGPCGPCSEIFFD  
Sbjct: 143 DPKRLLVTVYHTDDEAAGHWRKIAGLPEERIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 202

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+EQ +  ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 203 EGIPGGPPGSPDEDGDRFIEIWNLVFMQYEQVSPDERINLPRPSIDTGMGLERVAAVLQG 262

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLFK LI A+E+  G++ EG    +++VI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 263 VHDNYEIDLFKALIHATEEAVGVRAEGERRPSYKVIADHLRASSFLIADGVLPSNEGRGY 322

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 323 VLRRIMRRAMRHAQLLGAEEPLMWRLVPALVREMGQAYPELVRGEALITETLKLEETRFR 382

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      +G+ + L+G+ AFKLYDT+G PLD+ QD L  RG+  +D+  FN
Sbjct: 383 KTLARGLNLLSDATGGMGEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGVT-VDLEGFN 441

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   TE +WFS+K++ GAT F+GY+                  
Sbjct: 442 AAMERQKAEARASWAGSGEAATEAVWFSVKDRTGATDFLGYE------------------ 483

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+V+ G +VE A  G++V VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 484 -----TEEAEGIIAALVKDGAMVETAAEGEEVAVVTNQTPFYGESGGQVGDTGTIEGEGF 538

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I + QKK EG+FVH   V++G +R    + L +D++ R ++  NHSATHLLH AL  
Sbjct: 539 AIEIKNTQKKGEGLFVHFGQVKKGTVRISEPVSLRVDHERRTRIRANHSATHLLHEALRE 598

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + PD LRFD +H KPI   EL+ IED  N+++ QN PVVTR+M  +DA
Sbjct: 599 VLGTHVAQKGSLVAPDRLRFDFSHPKPIAEEELQQIEDLANEVVLQNAPVVTRLMAVDDA 658

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV++TG+I L++I+ E 
Sbjct: 659 IAEGAMALFGEKYGDEVRVVSMGKGTQGEKSGKTYSLELCGGTHVNATGDIGLVHIIGEG 718

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG  AR +L  Q+ +LK+ AS LKVS G+++ R+E + EE RKL+   
Sbjct: 719 AVAAGVRRVEALTGAAARRYLDEQERRLKAAASVLKVSPGDLLPRLETLVEERRKLEREL 778

Query: 775 AKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++ + +L +             ++  V F+  ++  +  K+LK + D  +K + SG+++ 
Sbjct: 779 SEARKKLALGGGAGAKAGEEREEVGGVGFIGRVVEGISPKDLKPLADEGKKSLGSGVVVF 838

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           VG S+E KASV++ VT+DL  RF+AVDL R ++  +GG GGGGRP MAQ+GGP+
Sbjct: 839 VGTSEEGKASVVVGVTDDLTGRFSAVDLVRKASAAIGGQGGGGRPDMAQAGGPD 892


>gi|170717275|ref|YP_001784390.1| alanyl-tRNA synthetase [Haemophilus somnus 2336]
 gi|205830062|sp|B0UTE1|SYA_HAES2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|168825404|gb|ACA30775.1| alanyl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 874

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/913 (42%), Positives = 541/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +   Y  
Sbjct: 1   MKTTAEIRQAFLDFFHSKGHQIVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLDTRSYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTSPEWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+  + IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPEEKLYVTVYETDDEAYGIWHKGVGVPENHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE + GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHVWGGLPGSEEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ V+Q   +NYDID+F+ LI    ++TG K       + RVI DH+RS ++LI DG+
Sbjct: 241 ERISAVIQHVNSNYDIDIFQKLIAKVAELTGEKD--LTNKSLRVIADHIRSCAYLIVDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  +     L+P L   M +A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPVLIDVMATAGKDVKAKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L ++  D +L+G+VAFKLYDT+G PLD+  D+   R  
Sbjct: 359 LRLEEEQFARTLERGLALLDEALINVK-DGVLSGEVAFKLYDTYGFPLDLTADVCRERN- 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RA+A S           + ++    G T F GY          
Sbjct: 417 IRIDEEGFEREMEVQRLRAQAASRFG------VDYNNVIRVEGTTTFEGYTEAE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+  +G+ VE   +GQ   V+ D TPFYAE+GGQ+GD
Sbjct: 465 -----------------TQAKVTALFYEGKSVESISAGQSAVVILDDTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            GC I   +R  + D QK    +F H   + +G L    ++   +D ++R + S+NHSAT
Sbjct: 508 RGCLIATNMRFDVKDTQKYG-QVFGHIGTLIQGTLNVGQTINAVVDTEHRIKTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LGSHV+Q GS ++   LRFD    + I+  +L  IE  VN  I  N  VV
Sbjct: 567 HLLHAALRQVLGSHVAQKGSLVSDTILRFDFAQPEAISQEQLFEIECLVNQHIRANHLVV 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  ++A A GA AL G KY D VRVV +     G  S  LCGG HV  TGEI L  I
Sbjct: 627 TEVMPIDEAKAKGAMALFGEKYGDVVRVVKM-----GEFSIELCGGIHVKRTGEIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VS S+I AG+RR+EA+TG+ A + L  Q   L   A  LK    ++V +++++ ++ +K 
Sbjct: 682 VSGSAIAAGVRRVEAVTGEGAINWLQQQQVLLMQSADLLKSDANSLVEKIQQLQDKAKKT 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  +I  V+ +   +  +D K L+ ++D L+ ++ S +I
Sbjct: 742 EKELQALKEKSAMKAGSDIAKSAVEINGVSVIVQQLENMDVKSLRVIVDDLKNQLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             V    E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFV-TKNEDKVNLVVGVTTDLTSKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENI 859

Query: 886 DQAIAGVASFLKK 898
            +A+     +L K
Sbjct: 860 SKALTVCNEWLHK 872


>gi|30249882|ref|NP_841952.1| alanyl-tRNA synthetase domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|41018196|sp|Q82TF8|SYA_NITEU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|30180919|emb|CAD85841.1| Alanyl-tRNA synthetase:DHHA1 domain [Nitrosomonas europaea ATCC
           19718]
          Length = 863

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/903 (42%), Positives = 547/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FLEFF+  GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K  Y   
Sbjct: 1   MKSSEIRQKFLEFFEARGHVIVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI  AW+ LT    + 
Sbjct: 61  VSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRKAILFAWEFLTGSLGIP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+ TVY ED+EA  +W    G+   +++RI T+DNFW M +TGPCGPCSEIF+D G 
Sbjct: 121 REKLWATVYAEDDEAADIWLNEVGIDPSRLVRIATSDNFWQMGDTGPCGPCSEIFYDHGP 180

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS + EG+RYIEIWNLVFMQ+ +    E   LPK S+DTGMGLER+A V+Q+ 
Sbjct: 181 AVAGGPPGSENAEGDRYIEIWNLVFMQYNRDASGELHPLPKPSVDTGMGLERIAAVMQQV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI+A+ +VTG K   NN  + +VI DH+R+ +FLI DG++P NEGRGYV
Sbjct: 241 HSNYEIDLFRSLIEAAARVTGSKDLSNN--SLKVIADHIRACAFLITDGVIPGNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +P    L+  L   MG AYPEL +A+  +   +R E+ERF +
Sbjct: 299 LRRILRRAIRHGYRLGQKQPFFYLLVDDLVDVMGPAYPELTRARKHVAGVIRQEEERFAE 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+ G+ +L+  LSH   +E L+G++ F+LYDT G P+D+  DI   RG   ID+  F  
Sbjct: 359 TLENGMEVLEAALSH--GNETLSGEIVFRLYDTFGFPVDLTADIARERG-IVIDMAGFET 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + +QR RARA                L+     T+F GY  L+                
Sbjct: 416 CMAQQRDRARASGKFTMQTG-------LEYTGQPTEFHGYATLQH--------------- 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + + A+ +QG  V+   +  +  VV DQTPFYAE+GGQ GD+G  +     
Sbjct: 454 --------EAQILALYKQGSRVDFIEADDEAVVVLDQTPFYAESGGQAGDSGELLSGSGT 505

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             + D QK   G+F H+ ++  G +     ++  +D   R   + NHSATHLLH AL  +
Sbjct: 506 FTVNDTQKIQAGVFGHNGMLSSGRMAIGDRVIARVDQIARTNTAYNHSATHLLHAALRQV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+HV+Q GS +    LRFD +H+  +   E++ +E+ VN  I +N  V T++M  +DA+
Sbjct: 566 LGNHVTQKGSLVDASRLRFDFSHNSAMQENEIRQVENLVNAQIRKNHEVATQLMTYDDAV 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY D VRVV++     G  S+ LCGGTHVS +G+I    IV+ES + AGI
Sbjct: 626 KQGAMALFGEKYGDTVRVVAM-----GDFSTELCGGTHVSYSGDIGFFRIVAESGVAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A ++   Q+++L+ +A  LK +      ++ +I +  R+++   A  + +
Sbjct: 681 RRIEALTGDAALAYTQQQEQQLQQVADALKAAPQEAAQKLSQILDNIRQMEKEIATLRSK 740

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L             +I  +  ++  +  V+ K L+  +D  + +++S +++L  I K+ K
Sbjct: 741 LAGVQSTSLIEQAQEIKGIRVLATTLENVNVKTLRETLDNFKNRLKSCVVVLGTIEKD-K 799

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            +++  VT+DL  +  A DL    A+ + GG GGGR  MAQ+GG    K  QA+A V S+
Sbjct: 800 VTLIAGVTDDLTVKLKAGDLINFVAQQV-GGKGGGRADMAQAGGTLPEKLPQALASVPSW 858

Query: 896 LKK 898
           +++
Sbjct: 859 VEQ 861


>gi|86750846|ref|YP_487342.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|123292252|sp|Q2ITM9|SYA_RHOP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|86573874|gb|ABD08431.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
          Length = 891

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/901 (51%), Positives = 606/901 (67%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNDIRSAFLNYFAKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF DQG
Sbjct: 121 KKDKLLVTVYHTDDEAASYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++E WNLVFMQ+EQ  K ER  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 EHIFGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKDERLPLPRPSIDTGMGLERMANILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+ LI A+    G      +  + RVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VDSVFETDLFRSLIDATSSALGRGPGEEDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG +EPLM  L+ AL  EMG AYPEL++A+ +IEET+R E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +GD AF LYDT+G PLD+ QD L  RG   +DI SF 
Sbjct: 361 KTLDRGLAILDEKSASLKKGDMFDGDTAFTLYDTYGFPLDLTQDALRNRG-ISVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WF L+EK GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATETVWFGLREKLGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V  G+ V+   +G    +V +QTPFYAE+GGQ+GDTG   GDG+
Sbjct: 462 -----TETAEGVVTALVADGKEVDALKAGDSGAIVLNQTPFYAESGGQVGDTGVLSGDGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD  KKA  +FVH   VE G ++ + +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTDTLKKAGDLFVHFGTVEEGAIKRDAALQLDVDHARRSSIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQKGSMVAPDRLRFDFVHQKPITPDELRRVEDIANDIVLENDEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ I  E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKTARDSGSNALGWSVELCGGTHVKRTGDIGLVSITGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG+ AR          K  A+ L+ +  ++  R+  + EE +KL+  
Sbjct: 697 SAVASGVRRIEALTGRYARQSANAAINTAKQAAAELRTTVDDMPARIAALMEERKKLERE 756

Query: 774 HAKRKLQLNV----------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +  + +L +                ++  V  M+  +  ++ K+LKS++D  +K++ SG
Sbjct: 757 LSDARKKLAMGGGGAAGAADGGADVREVGGVKLMARAVEGIEIKDLKSLVDQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I LV  S++ K S+++ VT DL+ RF+AVDL R ++ VLGG GGGG+P MAQ+GGP+G+
Sbjct: 817 VIALVATSEDGKGSIVVGVTPDLVARFSAVDLVRTASVVLGGKGGGGKPDMAQAGGPDGS 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|258623515|ref|ZP_05718516.1| alanyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|258584177|gb|EEW08925.1| alanyl-tRNA synthetase [Vibrio mimicus VM573]
          Length = 860

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/911 (42%), Positives = 542/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNEALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDETGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ I  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D  K       HH ++ +G+L     +   +D Q R  +S+NHSATHL
Sbjct: 510 VLKTEAGVFHVEDTHKLGN-AIAHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I +N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHSIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  ++  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYIEAQQA--------------QHDAKVVEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             I+ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNIA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|205830482|sp|Q3SLA9|SYA_THIDA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 872

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/910 (40%), Positives = 526/910 (57%), Gaps = 55/910 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GMV FK++FTGQ+   Y  
Sbjct: 1   MKSSA-IRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L
Sbjct: 60  AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W    G+   +I+RI  N       DNFW+M +TGPCGPC+
Sbjct: 120 PSEKLWVTVYAEDDEAYDIWHNDVGVPKARIVRIGDNKGARYASDNFWAMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  + GG P    E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER
Sbjct: 180 EIFYDHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ V+Q   +NY+IDLF+ LI A+ + T     GNN  + +VI DH+R+ SFLI DG++P
Sbjct: 240 ISAVMQHVHSNYEIDLFQALIAAAARETNTHDLGNN--SLKVIADHIRACSFLIVDGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRI+RRA+ +   LG        ++P L   MG AYPEL++A+  + + LR
Sbjct: 298 GNEGRGYVLRRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERF +T++ G+ +L+  L  L    + +G++AFKL+DT+G PLD+  DI    G   
Sbjct: 358 QEEERFFETIEHGMGILESELKKLVAGGVFDGELAFKLHDTYGFPLDLTADICREAG-VA 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  Q+++AR           +           AT F GYD L         
Sbjct: 417 VDTAAFDAAMARQKAQARGAGKFKLGAGLD-------YAGEATTFHGYDTL--------- 460

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G
Sbjct: 461 --------------AREASVLALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D  K    +F HH +V+ G L    S++  +D   R +   NHS THL
Sbjct: 507 TLQSKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVLARVDETARARTMRNHSVTHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG HV Q GS +  +  RFD     P+T+A+++ +E  VN  I  N P   R
Sbjct: 567 MHKALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQAR 626

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  EDA  +GA  L G KY D VRV+ +        S  LCGGTHV+ TG+I L  IVS
Sbjct: 627 VMGIEDAQKTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVARTGDIGLFKIVS 680

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RR+EAITG  A ++L  ++++++  A+ LK     +  ++ +  +  R L+ 
Sbjct: 681 ESGVAAGVRRVEAITGDNALAYLQAREQEIQQAAAALKAHPAELGAKLAQTLDHVRALEK 740

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L              I  V  ++  +  +D+K L+   D L+ K++S  ++L
Sbjct: 741 DLERLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETADKLRDKLKSCALVL 800

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   + K S++  VT D+  +  A +L  + A  + GG GGG+P +A +GG +      
Sbjct: 801 -GTVADGKVSLIAAVTPDVTAKIKAGELVNVVAAQV-GGKGGGKPDLAMAGGTDPGALPA 858

Query: 888 AIAGVASFLK 897
           A+A V ++++
Sbjct: 859 ALASVEAWVQ 868


>gi|187927840|ref|YP_001898327.1| alanyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|187724730|gb|ACD25895.1| alanyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 888

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/917 (41%), Positives = 537/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 9   MKASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 69  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 128

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 129 AEKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 188

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  + GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 189 IFYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 248

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 249 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 306

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL +A+  + 
Sbjct: 307 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVV 366

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E LR+E+ RF +T++ G+ +LD  L  L     ++L+G++AFKL+DT+G PLD+ QD+  
Sbjct: 367 EVLRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDVCR 426

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 +D  +F+ A+  QR +ARA      +  T      L      T F GY+ L   
Sbjct: 427 E-NDVIVDEAAFDAAMNRQREQARAAGKFKMAAGT------LDYTGDKTTFHGYEQLVRE 479

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+E   GQ   VV D TPFYAE+GG
Sbjct: 480 ----------------------TARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 517

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 518 QVGDQGTLKAATVWFDVVDTLKVQPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 577

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LGSHV Q GS +  +  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 578 HSATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 637

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                ++M  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 638 AATNAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIGS------SKELCGGTHVARTGDIG 691

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IVSES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 692 LFKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTSRIVQVQDQ 751

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K+Q
Sbjct: 752 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQ 811

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  +S + K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 812 TAAIVLGSVS-DGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 869

Query: 882 GNKADQAIAGVASFLKK 898
            +   QA+AGVA+++++
Sbjct: 870 PDNLPQALAGVAAWVQQ 886


>gi|87199300|ref|YP_496557.1| alanyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
 gi|123489936|sp|Q2G8V0|SYA_NOVAD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|87134981|gb|ABD25723.1| alanyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
          Length = 881

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/891 (49%), Positives = 587/891 (65%), Gaps = 33/891 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FLE+F  NGH+++PS+ L+P NDPTLMFTN+GMVPFKN+FTG E      
Sbjct: 1   MTSTNEIRRSFLEYFGSNGHDVVPSAPLVPYNDPTLMFTNAGMVPFKNVFTGLETRAVPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT+E+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTREWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY  D+EAF+LWKKI+GL  D+IIRI T DNFW+M + GPCGPCSEIFFD G
Sbjct: 121 PKDKLLATVYHTDDEAFELWKKIAGLPEDRIIRIATKDNFWAMGDDGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG P    E+G+R+IEIWNLVFMQFEQ   +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPDEDGDRFIEIWNLVFMQFEQTAGEITGSLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYD D FK LI ASE +T ++ EG++  +HRVI DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 241 EHDNYDTDTFKALIAASESLTSVRAEGDHKASHRVIADHLRSTSFLLADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  EMG+AYPEL +A+ LIEETL  E+ +F 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVAEMGAAYPELGRAQPLIEETLLREEVQFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  G+ LLD   + LG+ + L GD AFKLYDT+G P D+ +D L ARG   +D   F+
Sbjct: 361 RTLSNGIKLLDEATATLGEGDKLPGDTAFKLYDTYGFPYDLTEDALRARG-IAVDREGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ ARA   G G     ++WF + E+ GAT+F GY    G              
Sbjct: 420 AAMAQQKAAARAAWKGSGQAADSEVWFDIAERVGATEFTGYTATTG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V A+V+ G+ V+ A++G  V V+ +QTPFY E+GGQ GD G   G   
Sbjct: 466 ---------EAQVVALVKDGKEVDSAMAGDDVAVIVNQTPFYGESGGQTGDAGTITGGDG 516

Query: 540 RL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  ++D  K    +  H+A V+ G ++    + L ID   R  +  NHSATHLLH AL 
Sbjct: 517 LVLAVSDTAKPLGRLHAHNAKVQSGSVKVGDVVRLDIDVARRDAIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS +  D LRFD +H   +++ ++ +IE  VN  I  N  V TR+M+ ED
Sbjct: 577 HRLGAHVTQKGSLVAADRLRFDFSHPTALSAEDIAAIEAEVNAEIRANEVVTTRLMSPED 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA AL G KY D VRV+S+       +S  LCGGTHV + G+I +  IVSES++ +
Sbjct: 637 AIEAGAMALFGEKYGDEVRVLSMGRVADKHYSVELCGGTHVRALGDIGVFRIVSESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ AR   + +++ LK+ AS L+ +  +V  RV  + +E +KL+   A+ K
Sbjct: 697 GVRRIEALTGEGARQWFVAREDALKNTASILRTTPEDVEARVTALMDERKKLERELAEAK 756

Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             L +   S         +  V F   ++  +D K+L+ ++D  ++++ SG+ ++V +  
Sbjct: 757 KALALGGGSAKAENADEDVNGVKFSGQVLEGLDPKDLRGLLDQAKQRLGSGVAVIVAV-N 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           E KAS+   VT+DL  + +AVDL R   + LGG GGGGRP MAQ GGP G+
Sbjct: 816 EGKASIAAAVTDDLAGKVSAVDLVRAGVEALGGKGGGGRPDMAQGGGPEGS 866


>gi|152997630|ref|YP_001342465.1| alanyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|205830138|sp|A6W1F1|SYA_MARMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150838554|gb|ABR72530.1| alanyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 872

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/910 (42%), Positives = 532/910 (58%), Gaps = 53/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R +FL +F+   H+++ SSSL+P NDPTL+FTN+GMV FK++F G++   Y   
Sbjct: 1   MKSSELRQSFLSYFESKQHQIVESSSLVPGNDPTLLFTNAGMVQFKDVFLGEDIRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT    L 
Sbjct: 61  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHYAWEFLTVVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L +TVY +D+EAF +W K  GL  +KIIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 TEKLLVTVYADDDEAFDIWNKDIGLPVEKIIRIGDNKGGRYQSDNFWAMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +F+D GE I GG PGS  E+G+R+IEIWN+VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 VFYDHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRSADGTMASLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+IDLF++LI+A+ QV G +    +  + RVI DH+RS SF+I DG++P+
Sbjct: 241 AAILQGVHSNYEIDLFQNLIKAAAQVVGTQD--LSAQSLRVIADHIRSCSFMIVDGVIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+ AL  EMG AYPEL + K  +   L  
Sbjct: 299 NEGRGYVLRRIIRRAIRHGNKLGQKGVFFHKLVEALDVEMGEAYPELTKLKERVAAILLK 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F KTLD+G+ +L+  +S LG  +++ G+  FKLYDT+G P D+  D+    GL  I
Sbjct: 359 EEEQFAKTLDQGMKILEEAISGLGDQKVIPGETVFKLYDTYGFPADLTNDVARENGLE-I 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A++ QR+RAR+ S      +            GAT+F GY  L G        
Sbjct: 418 DEAGFEVAMDAQRARARSASNFSMDMSGSVSV------DGATEFTGYSNLNG-------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S V+ I+ +GE V    +GQ   VV  +TPFY E+GGQ+GD G 
Sbjct: 464 ---------------QSAVEQIIVEGESVSSLQAGQTGLVVLAETPFYGESGGQVGDQGW 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G            K   + +HH  V  G L     +   +D   R   ++NHSATHLL
Sbjct: 509 LRGPAA--AKVTNTTKQGKVHLHHVDVREGTLAVGDLVTTEVDRSLRNATALNHSATHLL 566

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + P+ LRFD +H + +T+AE + +ED VN+ +  N  VVT +
Sbjct: 567 HEALRRVLGDHVQQKGSLVNPERLRFDFSHFEGMTAAEFEQVEDMVNEQVRLNHEVVTEV 626

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A A GA AL G KY  +VRV+++    G  +S  LCGGTHVS TG+I L  IVSE
Sbjct: 627 MDIDSAKAKGAQALFGEKYESQVRVLTM----GADYSIELCGGTHVSRTGDIGLFKIVSE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I +G+RRIEA+TG+ A       +  L  +A   K S+   + +V  + ++ R LQ  
Sbjct: 683 GGIASGVRRIEALTGKAAIDATRHTETALGKIAGLFKASKEAALDKVVALNDQARALQKE 742

Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K ++              I     +   +   D K L+ ++D L+ K++S +I+L 
Sbjct: 743 LDVLKGKMAALAGADLASQAVDINGGKLLVAQVEVEDPKALRDLLDELKSKLESAVILLA 802

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K S++  VT++L     A DL ++ A  +  G GGGRP MAQ+GG N      A
Sbjct: 803 AV-NDGKVSLIAGVTKELTKNVKAGDLIKMVAPYV-DGKGGGRPDMAQAGGNNPEGLSAA 860

Query: 889 IAGVASFLKK 898
           +  V  ++ +
Sbjct: 861 LELVPGWVAE 870


>gi|262401750|ref|ZP_06078316.1| alanyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262352167|gb|EEZ01297.1| alanyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 860

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/911 (42%), Positives = 542/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +  G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGAELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D  K       HH ++ +G+L     +   +D Q R  +S+NHSATHL
Sbjct: 510 VLKTEAGIFHVEDTHKLGN-AIAHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I +N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHHIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSI-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  ++  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYIEAQQA--------------QHDAKVVEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAGLNGADNKALRGMVDDLKNQLGSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K  ++  VT DL  +  A +L  + A  + GG GGGRP MAQ+GG +      
Sbjct: 790 GNVA-DGKVGLIAGVTNDLTSKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAQALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|83747684|ref|ZP_00944719.1| Alanyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83725594|gb|EAP72737.1| Alanyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 880

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/917 (41%), Positives = 535/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGSDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 121 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  I GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 181 IFYDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 241 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + 
Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVV 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT G PLD+ QD+  
Sbjct: 359 DVLRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDVCR 418

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 +D  +F+ A+  QR +ARA      +  T      L      T F GYD L   
Sbjct: 419 E-NDVIVDEAAFDAAMNRQREQARAAGKFKLAAGT------LDYTGDKTTFHGYDQLVRE 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+    GQ   VV D TPFYAE+GG
Sbjct: 472 ----------------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGG 509

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 510 QVGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 570 HSATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                +IM  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 630 AATHAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 683

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 684 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQ 743

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K++
Sbjct: 744 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  +S E K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 804 TAAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 861

Query: 882 GNKADQAIAGVASFLKK 898
            +K  QA+AGV +++++
Sbjct: 862 PDKLPQALAGVTAWVQQ 878


>gi|56414779|ref|YP_151854.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363707|ref|YP_002143344.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|59798481|sp|Q5PF17|SYA_SALPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56129036|gb|AAV78542.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095184|emb|CAR60735.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 876

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/895 (43%), Positives = 556/895 (62%), Gaps = 56/895 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+E +++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDETYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D + F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEVGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYG-QAIGHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLVSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|229530358|ref|ZP_04419746.1| alanyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229332131|gb|EEN97619.1| alanyl-tRNA synthetase [Vibrio cholerae 12129(1)]
          Length = 860

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/911 (42%), Positives = 542/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++ +G+L T   +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGNIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  +L  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|315181173|gb|ADT88087.1| alanyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 860

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/906 (41%), Positives = 537/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTEVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY  D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYQTDDEAFDIWNKQVGIPADRIVRIGDKPGGKAYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS  E+G+R+IEIWN VFMQF +    +   LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGSPEEDGDRFIEIWNNVFMQFNRHADGKMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+  V G  Y+  +  + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL +   ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGSAGEELKKQHAIVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   E L+G+  FKLYDT+G P D+  D+   RG   
Sbjct: 361 IEEENFGRTLDRGMAILNEALDALSGTE-LDGETVFKLYDTYGFPADLTNDVARERGFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR RAR        G     +  L +  GAT+F GY   +G       
Sbjct: 419 IDEAGFEAAMEEQRQRAREA------GHFGTDYNQLIKVEGATEFCGYSATQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  +G+      +G K  +V ++TPFYAE+GGQ GD G
Sbjct: 466 ----------------ESTITEMFVEGQAAASLSAGDKAIIVLNETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++  G+     ++   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGVFHVVDTQKLGN-AIAHHGVMAEGVFAQGDTVHAIVDAKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +  +GLRFD +H + +++AELK +E  VN+ +  N  + T 
Sbjct: 569 LHAALRRVLGEHVMQKGSLVRAEGLRFDFSHLEAVSAAELKEVERLVNEQVRTNHRIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY+++VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIDAAKAKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A  +L  Q  +        +    ++  + + + +E + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDYLDAQHAQ-------FESKVADMASKAKGLEKEIQHLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A ++            IA V  +   +   D+K L+ ++D L+ ++ SGIIML  ++ 
Sbjct: 737 KLAAKESASLTS--KVKDIAGVKVLVAQLDGADNKALRGMVDELKNQLGSGIIMLGNVA- 793

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A+  V
Sbjct: 794 DDKVGLIAGVTKDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDAVALPSALESV 852

Query: 893 ASFLKK 898
            +++ +
Sbjct: 853 DAWIAE 858


>gi|300704797|ref|YP_003746400.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957]
 gi|299072461|emb|CBJ43811.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957]
          Length = 880

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/917 (41%), Positives = 535/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 121 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  I GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 181 IFYDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 241 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + 
Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVV 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT G PLD+ QD+  
Sbjct: 359 DVLRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDVCR 418

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 +D  +F+ A+  QR +ARA      +  T      L      T F GYD L   
Sbjct: 419 E-NDVIVDEAAFDAAMNRQREQARAAGKFKMTAGT------LDYTGDKTTFHGYDQLVRD 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+    GQ   VV D TPFYAE+GG
Sbjct: 472 ----------------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGG 509

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 510 QVGDQGTLKAATVWFDVADTLKVLPEVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 570 HSATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                +IM  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 630 AATNAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 683

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 684 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRVSEAAAALRAQPSELTQRIVQVQDQ 743

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K++
Sbjct: 744 VKSLEKELERLKSKLAASQGDELVEQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  +S E K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 804 TAAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 861

Query: 882 GNKADQAIAGVASFLKK 898
            +K  QA+AGV +++++
Sbjct: 862 PDKLPQALAGVTAWVQQ 878


>gi|78357417|ref|YP_388866.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123552081|sp|Q30YS5|SYA_DESDG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78219822|gb|ABB39171.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 880

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/908 (43%), Positives = 544/908 (59%), Gaps = 44/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLEFF+KNGHE++ SSSL+P +DPTL+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MITANEIRHRFLEFFRKNGHEVVDSSSLVPNDDPTLLFTNAGMVQFKKIFLGQEKRAYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  +T+E  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWSFITEELKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LYIT+Y +D+EA KLW+ ++G+ +++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKEKLYITIYRDDDEAEKLWQSVAGVPSERIYRLGEKDNFWSMGDTGPCGPCSEIHIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +  G        + +R++EIWNLVFMQ++Q     R  LP   IDTGMGLER+A V Q
Sbjct: 181 ADMACGPDCGIGKCDCDRFLEIWNLVFMQYDQAPDGTRTPLPNPCIDTGMGLERIAAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
              +N+D DLF+  I  + ++ G+ Y     +     RVI DH R+ +F+IADGILP+NE
Sbjct: 241 NVRSNFDCDLFQAFINYTAELAGVSYRKDSEDTDTALRVIADHSRAIAFMIADGILPSNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + RL+G     +      +  EMG A+PEL++ K  +   +R E+
Sbjct: 301 GRGYVLRRLIRRAYRFGRLIGLEGSYLYKTALKVVEEMGGAFPELLENKDFMARVVREEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF KTLD+GL+LL+  LS L       + GDVAFKLYDT G PLDI+ DI   RG + +
Sbjct: 361 ERFNKTLDKGLLLLEDELSALTARNSTCVAGDVAFKLYDTFGFPLDIVNDIAEKRGFS-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + ++EQ+SRA+A   G G  T    + +L E+  A++F+GYD L          
Sbjct: 420 DEDGFKKLMQEQKSRAKAAWKGGGEQTLAARFQALLEEGIASEFVGYDHL---------- 469

Query: 474 KVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           S + A++ +  E VE   +G    +V  +TPFY E+GGQLGDTG
Sbjct: 470 -------------SAESRIIALLGEDMESVEALPAGAAGYLVSTRTPFYGESGGQLGDTG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            A+ +    ++TD  K +  + VH   V +G L  + ++ LT+    R   + NH+ TH+
Sbjct: 517 DAVSETGSAEVTDTLKPSAKLLVHVVKVSQGELLRDQAVTLTVREGQRFASARNHTCTHI 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS + P+ LRFD TH   +T  E+ ++E+ VN +I  ++ + + 
Sbjct: 577 LHAALRKVLGDHVKQAGSLVGPERLRFDFTHISAMTPEEILAVENEVNRVILSDIALNSE 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  +DA+  GA AL G KY   VRVVS+        S  LCGGTH+ +TG+    YI S
Sbjct: 637 HMAYDDAVQKGAMALFGEKYESEVRVVSIPG-----ESVELCGGTHLRATGQAGSFYITS 691

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+TG  A    M Q  +L  +A  +K   G++ GRV+ + +E R L+ 
Sbjct: 692 ESGVAAGVRRIEAVTGWDAVRLFMQQRAELHEVAGLVKGKPGDIAGRVKTLQKEVRTLKK 751

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K   Q           S  ++  V  ++  +   + K L+ VMD ++ K+ SG+  L
Sbjct: 752 DMEKLAAQAASGKGRNLMDSVEEVNGVKLLAASLPGANVKALREVMDDVRSKLTSGVACL 811

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           V +  + K  +LI V++DL DRF A  L +  A  + GG GGGRP MAQ+GG +    + 
Sbjct: 812 VAVDGD-KVHMLIAVSKDLHDRFTAPALIKDVAARI-GGSGGGRPDMAQAGGTDPQGVED 869

Query: 888 AIAGVASF 895
           A A +   
Sbjct: 870 AFACLRQI 877


>gi|253689580|ref|YP_003018770.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756158|gb|ACT14234.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 875

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/910 (42%), Positives = 540/910 (59%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD GE I GG P    E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLFK LI+A     G         + RVI DH+RS +FLIADG+ 
Sbjct: 243 RISAVLQHVNSNYDIDLFKTLIEAVANAVGTTD--LTNKSLRVIADHIRSCAFLIADGVT 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIEVMGPAAAELKKQQSVVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F +TL+RGL LLD  + +L   + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KMEEEQFARTLERGLSLLDEEIKNLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+  QR RAR              + SL      T F GY+  +       
Sbjct: 420 -VDEEGFEAAMTAQRQRAREA------SGFGVDYNSLIRVDENTPFCGYEKTQQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V++  +G +  V+ ++TPFY E+GGQ+GD 
Sbjct: 467 -----------------QAKVIALYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   + D QK  +    H   + +G LR   S+   +D Q R ++ +NHSATH
Sbjct: 510 GELKNAGVSFAVQDTQKYGQ-AIGHVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T
Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA A GA AL G KY+D VRV+++     G  S  LCGGTH S TG+I L  I+
Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALE 743

Query: 772 LI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                    +   + +       +++ V  +   +  VD K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKAQQAAQESSSLSGKAKEVSGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-GTVAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|254226851|ref|ZP_04920422.1| alanyl-tRNA synthetase [Vibrio cholerae V51]
 gi|125620648|gb|EAZ49011.1| alanyl-tRNA synthetase [Vibrio cholerae V51]
          Length = 860

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/911 (42%), Positives = 545/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  +    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEISTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++ +G+L T   +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGIFYVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  +L  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|241662427|ref|YP_002980787.1| alanyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240864454|gb|ACS62115.1| alanyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 893

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/917 (41%), Positives = 537/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 14  MKASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 73

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 74  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 134 AEKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  + GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 194 IFYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 253

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 254 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 311

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL +A+  + 
Sbjct: 312 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVV 371

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E LR+E+ RF +T++ G+ +LD  L  L     ++L+G++AFKL+DT+G PLD+ QD+  
Sbjct: 372 EVLRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDVCR 431

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 +D  +F+ A+  QR +ARA      +  T      L      T F GY+ L   
Sbjct: 432 E-NDVIVDEAAFDAAMTRQREQARAAGKFKMAAGT------LDYTGDKTTFHGYEQLVRE 484

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+E   GQ   VV D TPFYAE+GG
Sbjct: 485 ----------------------TARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 522

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 523 QVGDQGTLKAATVWFDVVDTLKLQPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 582

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LGSHV Q GS +  +  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 583 HSATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 642

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                ++M  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 643 AATSAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIGS------SKELCGGTHVARTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IVSES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 697 LFKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIVQVQDQ 756

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K+Q
Sbjct: 757 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQ 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  ++ + K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 817 TAAIVLGSVT-DGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 874

Query: 882 GNKADQAIAGVASFLKK 898
            +   QA+AGVA+++++
Sbjct: 875 PDNLPQALAGVAAWVQQ 891


>gi|229512814|ref|ZP_04402281.1| alanyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229350063|gb|EEO15016.1| alanyl-tRNA synthetase [Vibrio cholerae TMA 21]
          Length = 860

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/911 (42%), Positives = 544/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGSEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++ +G+L T+  +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATDDQVDAIVDEKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  +L  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|309780932|ref|ZP_07675671.1| alanine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308920235|gb|EFP65893.1| alanine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 880

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/917 (41%), Positives = 537/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             RL+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 121 AERLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  + GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 181 IFYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 241 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL +A+  + 
Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVV 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E LR+E+ RF +T++ G+ +LD  L  L     ++L+G++AFKL+DT+G PLD+ QD+  
Sbjct: 359 EVLRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDVCR 418

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 +D  +F+ A+  QR +ARA      +  T      L      T F GY+ L   
Sbjct: 419 E-NDVIVDEAAFDAAMTRQREQARAAGKFKMAAGT------LDYTGDKTTFHGYEQLVRE 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+E   GQ   VV D TPFYAE+GG
Sbjct: 472 ----------------------TARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 509

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 510 QVGDQGTLKAATVWFDVVDTLKVRPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LGSHV Q GS +  +  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 570 HSATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                ++M  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 630 AATSAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIGS------SKELCGGTHVARTGDIG 683

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IVSES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 684 LFKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAVLRAQPSELTSRIVQVQDQ 743

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K+Q
Sbjct: 744 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQ 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  ++ + K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 804 TAAIVLGSVT-DGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 861

Query: 882 GNKADQAIAGVASFLKK 898
            +   QA+AGVA+++++
Sbjct: 862 PDNLPQALAGVAAWVQQ 878


>gi|22124793|ref|NP_668216.1| alanyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45440238|ref|NP_991777.1| alanyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|108810954|ref|YP_646721.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|145600311|ref|YP_001164387.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|153997648|ref|ZP_02022748.1| alanyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162420472|ref|YP_001605466.1| alanyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165925794|ref|ZP_02221626.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936759|ref|ZP_02225326.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010167|ref|ZP_02231065.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213026|ref|ZP_02239061.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398342|ref|ZP_02303866.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421632|ref|ZP_02313385.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423275|ref|ZP_02315028.1| alanyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167467648|ref|ZP_02332352.1| alanyl-tRNA synthetase [Yersinia pestis FV-1]
 gi|218930326|ref|YP_002348201.1| alanyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229838925|ref|ZP_04459084.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896406|ref|ZP_04511574.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229899492|ref|ZP_04514633.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901170|ref|ZP_04516293.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|270489353|ref|ZP_06206427.1| alanine--tRNA ligase [Yersinia pestis KIM D27]
 gi|20532253|sp|Q8ZBT8|SYA_YERPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122385127|sp|Q1CLK9|SYA_YERPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830294|sp|A9R0V7|SYA_YERPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830295|sp|A4TQ52|SYA_YERPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21957617|gb|AAM84467.1|AE013691_6 alanyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45435094|gb|AAS60654.1| alanyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|108774602|gb|ABG17121.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|115348937|emb|CAL21896.1| alanyl-tRNA synthetase [Yersinia pestis CO92]
 gi|145212007|gb|ABP41414.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149289285|gb|EDM39365.1| alanyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162353287|gb|ABX87235.1| alanyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165915408|gb|EDR34018.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922406|gb|EDR39583.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991074|gb|EDR43375.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205813|gb|EDR50293.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960551|gb|EDR56572.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050846|gb|EDR62254.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057445|gb|EDR67191.1| alanyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229681895|gb|EEO77988.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|229686984|gb|EEO79059.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695291|gb|EEO85338.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700480|gb|EEO88511.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|270337857|gb|EFA48634.1| alanine--tRNA ligase [Yersinia pestis KIM D27]
 gi|320016499|gb|ADW00071.1| alanyl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 875

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SS+L+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG      +  + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVADVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + SL     A+QF GYD ++       
Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDSASQFSGYDHVQQH----- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E  +G++  VV ++TPFY E+GGQ+GD 
Sbjct: 468 ------------------ATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +TD QK       H  I+  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFSVTDTQKYG-QAIGHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 TESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q           S   I  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 AALASVEAWV 871


>gi|297580680|ref|ZP_06942606.1| alanyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297535096|gb|EFH73931.1| alanyl-tRNA synthetase [Vibrio cholerae RC385]
          Length = 860

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/911 (42%), Positives = 543/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGASFHKLVGPLAEVMGTAGAELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++ +G+L T   +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  +L  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|117923331|ref|YP_863948.1| alanyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|205830136|sp|A0L3J9|SYA_MAGSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117607087|gb|ABK42542.1| alanyl-tRNA synthetase [Magnetococcus sp. MC-1]
          Length = 878

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/908 (43%), Positives = 558/908 (61%), Gaps = 44/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + IR  F+ FFQ++GH  + SSSL+P NDPTL+FTN+GMV FK++F G+E+  Y   
Sbjct: 1   MNGNEIRKRFVAFFQQHGHTHVESSSLVPRNDPTLLFTNAGMVQFKSLFLGEERRDYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+L W  +T++  +D
Sbjct: 61  VSAQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIRLGWRFVTEDLGID 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL +TVY ED+EA+ +W +  GL ADK+IRI T DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 121 AQRLLVTVYSEDDEAYAIWTQQIGLPADKVIRIPTTDNFWSMGDTGPCGPCSEIFYDYGD 180

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS  E+G+R++EIWNLVFMQ+++ +      LPK SIDTG GLER+A+VLQ K
Sbjct: 181 TVAGGPPGSEDEDGDRFVEIWNLVFMQYDRSSDGTLTPLPKPSIDTGAGLERLASVLQGK 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGR 297
           TNNYD DLF+ LI+A+  + G+     +     + RVI DH+RS SFLIADG+LP+NEGR
Sbjct: 241 TNNYDTDLFQPLIKAAAALAGVDDTTCSAEQLVSLRVIADHIRSVSFLIADGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRR M + RLLG  +P M  L+  L   MG  YPEL   +  +   + +E++R
Sbjct: 301 GYVLRRIMRRGMRHGRLLGLEQPFMHKLVETLGALMGDTYPELTAQRKTLAMVIETEEKR 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL  GL  L+  ++ L   ++L+G   F LYDT G PLD+  DIL  R   G+D   
Sbjct: 361 FAATLGTGLKHLEEAVAGLRMGDVLDGKTLFTLYDTFGFPLDLTADILRDR-EIGVDQEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+  ++EQR RARA   G G  +   ++  L E+ GA++F+GY                 
Sbjct: 420 FSACMKEQRERARAAWSGSGEASLGALYHPLLERVGASEFLGY----------------- 462

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIG 536
                 +    S+ V A+++ G  VE   +G +  VV +QTPFY E+GGQ+GD G   + 
Sbjct: 463 ------VHESASASVVALIKNGAEVESLTAGDEGSVVCNQTPFYGESGGQVGDRGVIQLA 516

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G R  +TD QK    + VHH  +  G +       L +D   R+ + ++HSATHL+HHA
Sbjct: 517 NGARFTVTDTQKPLPDLIVHHGKMVTGTVHLGDHAELQVDGATRQAIRLHHSATHLMHHA 576

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS ++ + LR D +H + ++  EL+++ED VN  I  N+   T +M  
Sbjct: 577 LRAVLGEHVKQAGSHVSAERLRLDFSHFQGMSEEELRAVEDRVNGAILSNVSQETAVMTP 636

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+A+GA AL G KY D VRVV +        S  LCGGTHVS +G++ + +I+SES++
Sbjct: 637 QEAVAAGAMALFGEKYGDEVRVVRIGD------SMELCGGTHVSRSGDMGIFHILSESAV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RR+EA+ G RAR+   G  E LK+ A+ LK     +   +E +  + ++L+    K
Sbjct: 691 AAGVRRLEAVCGGRARAIFRGDQEALKAAAALLKTQPNKLAEGIERLLGKQKELEKSLEK 750

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            +       +        ++  +  ++  +  VD K L+ ++D ++ K+ SG+I+L    
Sbjct: 751 LQSAQAGGMVEALLEQAVEVGGIKLLAVEVKGVDGKALREMVDQVKDKLGSGVILLA--L 808

Query: 832 KEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K S++  VT+DL   R  A DL   +A ++ GG GGGRP MAQ GG         + 
Sbjct: 809 GGDKVSLVAGVTKDLAGKRVKAGDLMAFAAAMV-GGKGGGRPDMAQGGGTEVAAIPTMLT 867

Query: 891 GVASFLKK 898
            +  +L++
Sbjct: 868 AIPGWLQE 875


>gi|319899070|ref|YP_004159163.1| Alanyl-tRNA synthetase [Bartonella clarridgeiae 73]
 gi|319403034|emb|CBI76589.1| Alanyl-tRNA synthetase [Bartonella clarridgeiae 73]
          Length = 887

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/910 (52%), Positives = 629/910 (69%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+TFL++F  NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y+ 
Sbjct: 1   MNSVNSIRSTFLDYFHHNGHEILSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKYPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D  A +LW+KISGL  +KIIRI TNDNFWSM + GPCGPCSEIF+D G
Sbjct: 121 SKDKLLVTVYHTDNVAAELWRKISGLPDEKIIRIATNDNFWSMGDIGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E G+R+IEIWNLVFMQ+EQ NK+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIFGGPPGSAYENGDRFIEIWNLVFMQYEQVNKEERIELPCPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF  LI+AS+++TG++  G  I +HRVI DHLRSS+FLI+DG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFCKLIRASQEITGVEATGEFIASHRVIADHLRSSAFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  E LM HLLP L  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMGHLLPVLIREMGQAYPELVRAESLISEILKLEETRFH 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + +  +G+VAFKLYDT+G P+D+ QD+L  RG   +DI +F 
Sbjct: 361 KTLERGLSLLNEASTDLKEGDHFDGEVAFKLYDTYGFPIDLTQDVLRRRG-ISVDIDAFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++  RA+  G G+  TE +WFS++++ G T+F+GY+                  
Sbjct: 420 KAMELQKAENRANWSGSGASMTETVWFSIRDQVGTTEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ A+V  G+IV+   SGQ   +V +QTPFYAE+GGQ+GD+G    +  
Sbjct: 462 -----TEKAEGVITALVCDGKIVDHVFSGQDAMLVVNQTPFYAESGGQIGDSGVICSESF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q++ EG+F+H   V+ G  +    + L ID   RR++  NHSATHLLH AL  
Sbjct: 517 VFEVHDTQRRGEGVFIHIGKVKSGQAKISDCVELIIDSGRRRKIRANHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS ++PD LRFD +H K I+S ELK +ED  NDI+ +N  V T +M  +DA
Sbjct: 577 ILGPHVAQKGSLVSPDRLRFDFSHPKSISSEELKRVEDLANDIVLRNSKVTTHLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+             S  LCGGTHV  TG+I L++IV+ES
Sbjct: 637 IFEGAMALFGEKYGDEVRVVSMGERCEPTELKKRWSIELCGGTHVQRTGDIGLIHIVAES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           SI +G+RRIEA+TG  AR +L  QD+++  +ASFLK S  NV  RV  ++++ RKL+   
Sbjct: 697 SIASGVRRIEALTGTTARLYLSKQDKRIYEIASFLKASPANVEERVRNLFDDRRKLEKEL 756

Query: 775 AKRKL-------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              +         L     +   I  ++FM  ++  +  ++LK+++D+ +K+I+SG++  
Sbjct: 757 NDTRKSVVLNGRALQGRKENITIINGISFMGGVLRNIAVRDLKTLVDSGKKQIESGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + +S++ K S ++ VT+DL +  NAVDL R+ + VLGG GGGGRP MAQ+GG  G+KAD+
Sbjct: 817 ISVSEDGKGSAVVGVTDDLTNMLNAVDLVRVISVVLGGQGGGGRPDMAQAGGSKGDKADE 876

Query: 888 AIAGVASFLK 897
           AI  + +FLK
Sbjct: 877 AITALKAFLK 886


>gi|300023633|ref|YP_003756244.1| alanyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525454|gb|ADJ23923.1| alanyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 897

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/919 (49%), Positives = 619/919 (67%), Gaps = 47/919 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ VS+IR++FL++F KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTGQE      
Sbjct: 1   MAGVSAIRSSFLDYFAKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGQETRAIPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+LLTK+F L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLLTKDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +T+Y  D++A+K+WKK++G S D+IIRI ++DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 DAKRLLVTIYHTDDDAYKIWKKVTGFSDDRIIRIASSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS + EG+R+IEIWNLVFMQFEQ+   +R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DKIPGGPPGSPDSEGDRFIEIWNLVFMQFEQRAPGDRIDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGI 290
           K +NY+IDLF++LIQ+  Q                    V  RVI DHLRS+SFLIADG+
Sbjct: 241 KHDNYEIDLFENLIQSIRQEAAKTGAKETGGDASPEFLNVARRVIADHLRSTSFLIADGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRIMRRAM YA  +G  +PLM  L+P+L  EMG AYPEL++A+ LI ET
Sbjct: 301 LPSNEGRGYVLRRIMRRAMRYAHQMGCHDPLMHLLVPSLVREMGDAYPELVRAQPLITET 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+ +F +TLD GL LL    + + K  +  GDVAFKLYDT G PLD+ +D L  RG 
Sbjct: 361 LKLEETKFKRTLDNGLKLLGESSASIKKGAVFPGDVAFKLYDTFGFPLDLTEDALKPRG- 419

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D  +F+ A+++Q+  A+A   G G   TE +WF +K+K GA++F+GYD         
Sbjct: 420 ISVDTNAFDAAMKKQKDAAKAAWKGSGEAATEGLWFEIKDKVGASEFLGYD--------- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                         T     IV A+V  G+  +   +G +  ++ +QTPFY E+GGQ+GD
Sbjct: 471 --------------TETAEGIVAALVANGKDADTLKAGDEGALILNQTPFYGESGGQVGD 516

Query: 531 TGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G   G      ++TD QKK   +FVH   VE G      ++ + +D+  R     NHSA
Sbjct: 517 QGVIKGAKGALFRVTDTQKKLGDLFVHFGKVEAGSFTAGDAVEIEVDHARRTATRANHSA 576

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG+HV+Q GS ++PD LRFD +H+KP+++ E+K++ED  N ++ +N PV
Sbjct: 577 THLLHEALRQVLGTHVAQKGSLVSPDRLRFDFSHTKPMSAEEIKAVEDMANAVLLENTPV 636

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIM 706
           VTR+M  ++A ASGA AL G KY D VRVVS+     G     S  LCGGTHV+ TG+I 
Sbjct: 637 VTRLMALDEARASGAMALFGEKYGDEVRVVSMGSTRPGANKAWSVELCGGTHVTRTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ +V+ES   AG+RRIEA+TG+ AR++L  QD +++  AS LK    +++ R++ + EE
Sbjct: 697 LVRVVAESGSAAGVRRIEALTGEGARAYLDEQDARVREAASVLKTRPEDLIERLKHLVEE 756

Query: 767 YRKLQLIHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            + L+   A  K +L +            +   I +V  ++  +  ++ K+L+ ++D  +
Sbjct: 757 RKVLEKQLADAKRKLALGGGVNGASDGADAIRSIGNVKLLARTVQGLNPKDLRGLIDDGK 816

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K++ SGI+ +VG++++ KA + + VTEDL+  ++AVDL +  A+ LGG GGGGRP MAQ+
Sbjct: 817 KQVGSGIVAIVGVTEDGKAGLAVGVTEDLVKSWSAVDLVKAGAEALGGKGGGGRPDMAQA 876

Query: 878 GGPNGNKADQAIAGVASFL 896
           GGP+G KA  A+  + + L
Sbjct: 877 GGPDGAKAGDALKAIEARL 895


>gi|307945634|ref|ZP_07660970.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307771507|gb|EFO30732.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 888

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/910 (52%), Positives = 628/910 (69%), Gaps = 38/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F KN HE++ S  L+P NDPTLMF N+GM  FKNIFTG EK     
Sbjct: 1   MTGVNDIRSTFLDYFSKNSHEVVESGPLVPRNDPTLMFANAGMNQFKNIFTGLEKRECSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L
Sbjct: 61  AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TV+ ED+EA  LWKKI+GLS DKIIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PADRLLVTVFAEDDEAAVLWKKIAGLSDDKIIRIATSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ   + R  LP+ SIDTGMG+ER+AT+LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQLADK-RVDLPRPSIDTGMGIERLATILQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLFK LI ASE  TG++  G+ + +HRVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 240 VHNNYDIDLFKALISASEHETGVEASGDALSSHRVIADHLRSTSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRR M +A LLG  +PLM  L+P+L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 300 VLRRIMRRGMRHAHLLGARDPLMHKLVPSLIREMGRAYPELGRAEALISETLKLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD     L +   L+G+ AFKLYDT+G PLD+ QD L  RG   +D   F+
Sbjct: 360 KTLERGLGLLDTASGDLFEGGQLDGETAFKLYDTYGFPLDLTQDALRTRG-ISVDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   TE IWF+LK+K GAT F+GY+                  
Sbjct: 419 SAMERQKAEARAAWSGSGGAVTETIWFALKDKVGATDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +VK +V     V++  SGQ+  VV +QTPFY E+GGQ+GD G  IG+G+
Sbjct: 461 -----TETAEGVVKGLVADDAQVDKLNSGQEGFVVLNQTPFYGESGGQVGDAGLMIGEGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+ ++DVQKKA+G+FVH   VE G L  +  L L +D+  R  +  NHSATHL+H AL  
Sbjct: 516 RVTVSDVQKKADGLFVHAVKVEDGTLTLDQPLELKVDHARRTAIRSNHSATHLVHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS ++P+ LRFD +H KP++  EL   E   N+I+ QN PV TR+M  +DA
Sbjct: 576 VLGTHVAQKGSMVSPERLRFDFSHPKPLSDEELAVTEKFANEIVLQNAPVETRLMAVDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I +GA AL G KY D VRVVS+       ++G  +S  LCGGTHV  TG+I L+ +VSE+
Sbjct: 636 IEAGAMALFGEKYGDEVRVVSMGTALHGEKEGKPYSLELCGGTHVKRTGDIGLVTLVSEA 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG  AR++L  QD+++K +A+ LK    +V  RV ++ E+ RKL+   
Sbjct: 696 AVAAGVRRVEALTGSEARAYLDAQDKRVKEVAAILKSGMADVPARVAQLVEDRRKLEKEL 755

Query: 775 AKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + K +L            +   I  V  M  ++  +++K+LK ++D  + +I SG+++L
Sbjct: 756 QEAKKKLAMGGGAGGDAGGAVKTIGSVQLMGRVVEGINAKDLKGMVDEAKTQIGSGVVVL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +   +  KAS++  VT+DL+++ +AVDL RL ++ LGG GGGGRP MAQ+GGP+G+KA+ 
Sbjct: 816 ISTGEGGKASIVTGVTKDLVEKVSAVDLVRLGSEALGGRGGGGRPDMAQAGGPDGSKAED 875

Query: 888 AIAGVASFLK 897
           AI  +   L+
Sbjct: 876 AIKAIEGHLE 885


>gi|205830265|sp|Q11IW3|SYA_MESSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 887

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/894 (52%), Positives = 623/894 (69%), Gaps = 37/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL+FF+KNGHE++ S  L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNDIRSAFLDFFKKNGHEVVASGPLVPRNDPTLMFTNAGMVQFKNVFTGMETRPYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIELAWNLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D +RL +TVY  D+EA   W+KI+GL  ++IIRI T+DNFW+M +TGPCGPCSEIFFD  
Sbjct: 121 DPKRLLVTVYHTDDEAAGHWRKIAGLPEERIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+EQ +  ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 EGIPGGPPGSPDEDGDRFIEIWNLVFMQYEQVSPDERINLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLFK LI A+E+  G++ EG    +++VI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYEIDLFKALIHATEEAVGVRAEGERRPSYKVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAEEPLMWRLVPALVREMGQAYPELVRGEALITETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      +G+ + L+G+ AFKLYDT+G PLD+ QD L  RG+  +D+  FN
Sbjct: 361 KTLARGLNLLSDATGGMGEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGVT-VDLEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   TE +WFS+K++ GAT F+GY+                  
Sbjct: 420 AAMERQKAEARASWAGSGEAATEAVWFSVKDRTGATDFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+V+ G +VE A  G++V VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 462 -----TEEAEGIIAALVKDGAMVETAAEGEEVAVVTNQTPFYGESGGQVGDTGTIEGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I + QKK EG+FVH   V++G +R    + L +D++ R ++  NHSATHLLH AL  
Sbjct: 517 AIEIKNTQKKGEGLFVHFGQVKKGTVRISEPVSLRVDHERRTRIRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + PD LRFD +H KPI   EL+ IED  N+++ QN PVVTR+M  +DA
Sbjct: 577 VLGTHVAQKGSLVAPDRLRFDFSHPKPIAEEELQQIEDLANEVVLQNAPVVTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV++TG+I L++I+ E 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGKGTQGEKSGKTYSLELCGGTHVNATGDIGLVHIIGEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG  AR +L  Q+ +LK+ AS LKVS G+++ R+E + EE RKL+   
Sbjct: 697 AVAAGVRRVEALTGAAARRYLDEQERRLKAAASVLKVSPGDLLPRLETLVEERRKLEREL 756

Query: 775 AKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++ + +L +             ++  V F+  ++  +  K+LK + D  +K + SG+++ 
Sbjct: 757 SEARKKLALGGGAGAKAGEEREEVGGVGFIGRVVEGISPKDLKPLADEGKKSLGSGVVVF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           VG S+E KASV++ VT+DL  RF+AVDL R ++  +GG GGGGRP MAQ+GGP+
Sbjct: 817 VGTSEEGKASVVVGVTDDLTGRFSAVDLVRKASAAIGGQGGGGRPDMAQAGGPD 870


>gi|254230499|ref|ZP_04923872.1| alanyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262393294|ref|YP_003285148.1| alanyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|151936971|gb|EDN55856.1| alanyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262336888|gb|ACY50683.1| alanyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 860

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/911 (41%), Positives = 541/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGVLAEVMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G       
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNAAIKVDTQTEFCGYTGTKG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           SS V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTESGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKADSLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A   +  Q+ K +               ++ E  ++ + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQNAKYEE--------------KLAESAQKAKALEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   +         ++     +   +   DSK L++++D ++ ++ SG+++L
Sbjct: 730 EVQKLKDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K  ++  VT+DL  +  A DL ++ A+ + GG GGGRP MAQ+GG + +   +
Sbjct: 790 ANVTGD-KVGLIAGVTKDLTGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVSALPE 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIKTVQPWLEE 858


>gi|238784094|ref|ZP_04628108.1| Alanyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238714940|gb|EEQ06938.1| Alanyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 875

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 551/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDVGIPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG      +  + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLITAVADVTGATDF--SSKSLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLIAVMGSAADELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELNKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + SL     A+QF GYD +        
Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDSASQFSGYDHV-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + G+ V+E  +G++  VV +QTPFY E+GGQ+GDT
Sbjct: 465 ---------------HQQATVTALFRNGQAVDEIHAGEEAVVVLNQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK       H   +  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFVVADTQKYG-QAIGHLGKLTHGTLRVNHSIDAQVDATRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +NLP+ T
Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNLPIQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+S+     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKADTHNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q           S   +  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 SALASVEAWV 871


>gi|110834659|ref|YP_693518.1| alanyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|110647770|emb|CAL17246.1| (alanyl-tRNA synthetase) [Alcanivorax borkumensis SK2]
          Length = 900

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/903 (42%), Positives = 534/903 (59%), Gaps = 46/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL++F   GH  + SSSL+P NDPTL+FTN+GM  FK++F G+E   Y   
Sbjct: 38  MKSAELRQAFLDYFASQGHTKVSSSSLVPANDPTLLFTNAGMNQFKDVFLGRESRDYTRA 97

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT    L 
Sbjct: 98  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGLP 157

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++TV+  D+EA  +W K  G+SA++  R+   DNFW M +TGPCGP SEIF+D G 
Sbjct: 158 EERLWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGA 216

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS++E  +RYIEIWNLVFMQ+++Q   E   LPK S+DTGMGLER+A VLQ  
Sbjct: 217 DVPGGPPGSADEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQGV 276

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ L+QA+ + TG         + RVI DH+RS+SFLI DG++P+NEGRGYV
Sbjct: 277 HSNYEIDLFQALLQAAAKATGCTD--LEEKSLRVIADHIRSASFLICDGVIPSNEGRGYV 334

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +P    L+ AL  EMG AYPEL + +  IE+ L +E+E+FG+
Sbjct: 335 LRRIIRRALRHGHKLGQDKPFFSTLVAALVAEMGEAYPELGREQARIEKALLAEEEQFGR 394

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL  G+ +L+  +  L    +L GDV F LYDTHG P D+  D+   R L+ +D+  F  
Sbjct: 395 TLAAGMKVLESAIEQLD-GRVLPGDVLFNLYDTHGFPPDLTADVARERDLS-VDMDGFEA 452

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+  QR RAR      G+G+    +         T F GY+ L                 
Sbjct: 453 AMAAQRERAR------GAGSFANDYSDRLNIDAITDFSGYEKLADDN------------- 493

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      V A+ + G  V+   +G++  VV D+TPFYAE+GGQ+GDTG  I D  R
Sbjct: 494 ----------TVVALYKDGAAVDTLNAGEEGMVVLDRTPFYAESGGQVGDTGALIADEAR 543

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +TD +K+     VH      G L     +   +D   R  +  NHSATHL+H AL  +
Sbjct: 544 FMVTDTRKRQA-AHVHVGKQVSGSLTIGGKVSACVDVDRRLAVMRNHSATHLMHAALRNV 602

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS ++ D LRFD +H + ++ A+ + IE  VN  I  N  V T +M+ E A 
Sbjct: 603 LGEHVQQKGSLVSADYLRFDFSHGEAVSEAQREEIEILVNRQILANTAVTTELMDIESAR 662

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY+D+VRV+S+        S  LCGGTHV+ TG+I L  I  E+S  AG+
Sbjct: 663 EAGAMALFGEKYDDQVRVLSMGS---DGFSKELCGGTHVNRTGDIGLFRITLEASAAAGV 719

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A + +  Q+  L  +A+ +K S  N   RV    ++ R+L+    + K +
Sbjct: 720 RRIEAVTGEHALAVMRRQERALSEIAATVKSSLDNAADRVRSQAQKVRELEKEIERLKQK 779

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L              I  V  ++  I   D K L+  MD L+ K+ S +I+L  +  E K
Sbjct: 780 LASGAGGDLTSEVQDINGVKVLATQIDGADGKTLRVTMDKLKDKLGSAVIVLAAVEGE-K 838

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            +++  VT+DL  ++ A DL +  A+ +  G GGGRP MAQ GG N      A+  V ++
Sbjct: 839 VALVAGVTKDLTTKYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALESVKAW 897

Query: 896 LKK 898
           + +
Sbjct: 898 VAE 900


>gi|312884640|ref|ZP_07744343.1| alanyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367732|gb|EFP95281.1| alanyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 860

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/911 (41%), Positives = 538/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLQFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   L 
Sbjct: 63  TSSQRCLRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIAFAWEFLTEILKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W +  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFNIWNQQIGVPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V  ++    +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEVISVED--LSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGTFFFKLVGVLADVMGSAGEELKRQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L     D+ L+G+  FKLYDT+G P D+  D+   RG   
Sbjct: 361 IEEENFGRTLERGMAILNDALD-ASADKTLDGETVFKLYDTYGFPADLTNDVARERGFI- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+E QR RAR       +G     +    +   AT+F GY            
Sbjct: 419 IDEAGFEQAMEVQRQRAR------DAGQFGTDYNEAIKVDSATEFCGYTSTSAL------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V A+  +   VE   +G K  +V D+TPFYAE+GGQ GD+G
Sbjct: 467 -----------------GTVDAMFVESRQVESLSAGDKAVLVLDETPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       H+  ++ G+L ++  +   +D   R  +S+NHSATHL
Sbjct: 510 QICTDSGIFVVEDTQKLGN-AIAHYGWMKEGVLASKDKVEALVDKGRRNAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H + +T+ E+K +E  VND +  N  V T 
Sbjct: 569 LHAALRKVLGEHVTQKGSLVKADNLRFDFSHLEAMTADEIKQVERLVNDHVRLNHDVETD 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A + GA AL G KY+D+VRV+S+     G  S+ LCGG HVSSTG+I L  I S
Sbjct: 629 IMDIESAKSKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHVSSTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG  A   +  Q ++ +               ++ E  ++ + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGDAALDVIEAQHQQYEE--------------KLAESAQKTKALEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   + +       ++  V  +   +   DSK L++++D ++ ++ SG+++L
Sbjct: 730 EIQKLKDKMAAAESANIMGQVKEVNGVKVLVAKLEGADSKNLRTMVDDIKNQLGSGVVLL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++++ K  ++  VT+DL+    A +L ++ A+ + GG GGGRP MAQ+GG +      
Sbjct: 790 ANVNQD-KIGLIAGVTKDLVGDVKAGELVKMVAEQI-GGKGGGRPDMAQAGGTDVTALPT 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIDSVQPWLEE 858


>gi|254427911|ref|ZP_05041618.1| alanyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196194080|gb|EDX89039.1| alanyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 866

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/903 (42%), Positives = 534/903 (59%), Gaps = 47/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL++F   GH  +PSSSL+P NDPTL+FTN+GM  FK++F G+E   Y   
Sbjct: 1   MKSAELRQAFLDYFASQGHTKVPSSSLVPHNDPTLLFTNAGMNQFKDVFLGRESRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT    L 
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++TV+  D+EA  +W K  G+SA++  R+   DNFW M +TGPCGP SEIF+D G 
Sbjct: 121 EDRLWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGA 179

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS  E+ +RYIEIWNLVFMQ+++Q   E   LPK S+DTGMGLER+A VLQ  
Sbjct: 180 HVPGGPPGSEGEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ L+QA+ + TG +       + RVI DH+RS+SFLI DG++P+NEGRGYV
Sbjct: 240 HSNYEIDLFQALLQAASKATGCQD--LEEKSLRVIADHIRSASFLICDGVIPSNEGRGYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +P    ++ AL  +MG AYPEL + +  IE+ L +E+E+FG+
Sbjct: 298 LRRIIRRALRHGHKLGQDKPFFSTMVSALVEQMGEAYPELGREQARIEKALLAEEEQFGR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL  G+ +L+  +  L   ++L G+V F LYDTHG P D+  D+   R L  +D+  F  
Sbjct: 358 TLAAGMKVLESAIEQLD-GKVLPGEVLFNLYDTHGFPPDLTADVARERALT-VDMDGFET 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+  QR RAR      G+G+    +         T F GY+ L                 
Sbjct: 416 AMAAQRERAR------GAGSFANDYSDRLNIDAVTDFSGYEKLADDDA------------ 457

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DG 538
                      V A+ + G+ VE   +G++  VV  +TPFYAE+GGQ+GDTG  +G  D 
Sbjct: 458 -----------VVALYKDGDAVETLNAGEEGMVVLARTPFYAESGGQVGDTGALMGGDDS 506

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +    +K +   VH   +E G L     +   +D   RR +  NHSATHL+H AL 
Sbjct: 507 ETRFLVTDTRKRQAAHVHVGKLESGTLTVGSKVSAYVDVDRRRAVMRNHSATHLMHAALR 566

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +  D LRFD +H + ++ A+ + IE  VN  I  N  V T +M+ + 
Sbjct: 567 DVLGEHVQQKGSLVAADYLRFDFSHGEAVSEAQREQIEILVNRQILANTAVTTELMDIDA 626

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  +GA AL G KY+D+VRV+S+        S  LCGGTHV+ TG+I L  I  E+S  A
Sbjct: 627 AREAGAMALFGEKYDDQVRVLSMGS---DGFSKELCGGTHVNRTGDIGLFRITLEASAAA 683

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ A + +  Q+  L  +A+ +K S  N   RV    ++ R+L+    + K
Sbjct: 684 GVRRIEAVTGEHALAVMRQQERALSEIAATVKSSPDNAADRVRSQAQKVRELEKEIERLK 743

Query: 779 LQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +L              +  V  ++  I   DSK L+  MD L+ K+ S +I+L  +  +
Sbjct: 744 QKLASGAGGDLTSEVQDVNGVKVLATQIDGADSKTLRVTMDKLKDKLGSAVILLAAVEGD 803

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K +++  VT+DL  R+ A DL +  A+ +  G GGGRP MAQ GG N      A+  V 
Sbjct: 804 -KVALVAGVTKDLTARYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALESVK 861

Query: 894 SFL 896
            ++
Sbjct: 862 GWV 864


>gi|71908916|ref|YP_286503.1| alanyl-tRNA synthetase [Dechloromonas aromatica RCB]
 gi|83305844|sp|Q47AU8|SYA_DECAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71848537|gb|AAZ48033.1| alanyl-tRNA synthetase [Dechloromonas aromatica RCB]
          Length = 871

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/909 (41%), Positives = 529/909 (58%), Gaps = 54/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKSSEIRQQFLDFFASKGHQIVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT+ + L 
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKYAWELLTEVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EA+ +W K  G+  +++IRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KDKLTVTVYAEDDEAYDIWTKEIGVPVERVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE   GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFYDHGEKYWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERV 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + VLQ    NY+IDLF+ L++A+ +         +  + +V+ DH+R+ SFL+ADG++P 
Sbjct: 241 SAVLQGVHANYEIDLFQALLKAAAR--ETSDADLDSPSLKVLADHIRACSFLLADGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++P L  EMG AYPEL Q +  I  TL+ 
Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGMAYPELGQNQAKIVATLKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++RF +T++ G+ +L+G L  LG+  + NGD AFKL+DT+G PLD+ QDI     +   
Sbjct: 359 EEDRFFETIEHGMAILEGELKSLGEGGVFNGDTAFKLHDTYGFPLDLTQDICREHKITVD 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
                + A+  Q+ +ARA           K+  +L+    AT F GY  L          
Sbjct: 419 AAAF-DAAMARQKEQARAAGKF-------KMATNLEYDGPATTFHGYAALEY-------- 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V A+ + G  V +   G+   VV D TPFYAE+GGQ+GD G 
Sbjct: 463 ---------------KANVLALYKDGIAVNQLNEGEMGVVVLDDTPFYAESGGQVGDCGA 507

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    + D QK    +F HH +V+ G +     +   +D Q R+++  NHSATHLL
Sbjct: 508 LQSVHGIFAVEDTQKIQATVFGHHGVVKTGTITVGNGVAAKVDVQARQRIMRNHSATHLL 567

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD  RFD  H++P+T  E++ +E+ VN  I  N+   TR+
Sbjct: 568 HKALREVLGDHVQQKGSQVDPDKTRFDFVHNQPMTDEEIRRVENIVNAEILANVATETRV 627

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +   +A   GA  L G KY D VRV+ +        S  LCGGTHVS TG+I L  I +E
Sbjct: 628 LPIAEAQKLGAMMLFGEKYGDDVRVLDIGS------SRELCGGTHVSRTGDIGLFSITAE 681

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RR+EA+TG  A +++   +  L  +A  LKV   +V GRV  + ++ +KL+  
Sbjct: 682 GGVAAGVRRVEAVTGDNALAYMQDMESALGGVAGTLKVLPKDVHGRVLAVLDQVKKLERE 741

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K +L          +   I     ++  +   D   L+  MD L+ K++S  I+L 
Sbjct: 742 LAALKGKLASAQGDDMLSNAVDIKGAKVLAATLEGADVNALRETMDKLKDKLKSAAIVLA 801

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++ + K +++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG        A
Sbjct: 802 SVA-DGKVTLIAGVTADLTGKVKAGELVNLVAQQI-GGKGGGRPDMAQAGGTQPENLPAA 859

Query: 889 IAGVASFLK 897
           +A VA +++
Sbjct: 860 LASVAGWVE 868


>gi|238799432|ref|ZP_04642859.1| Alanyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238716719|gb|EEQ08608.1| Alanyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 875

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/911 (42%), Positives = 551/911 (60%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDVGIPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG      +  + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLITAVADVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL   + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGSAADELKHQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + SL     A+QF GYD +        
Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDSASQFSGYDHV-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GDT
Sbjct: 465 ---------------HQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK       H   +  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFAVADTQKYG-QAIGHLGKLTHGTLRVNHSIDAQVDVTRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +NLP+ T
Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNLPIQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+S+     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALVHQQSDLLQDVAHLVKGDTNNLTEKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q           S   ++ V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLVSGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFLK 897
            A+A V ++++
Sbjct: 862 SALASVEAWVE 872


>gi|261210116|ref|ZP_05924414.1| alanyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260840881|gb|EEX67423.1| alanyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 860

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/911 (42%), Positives = 543/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +  G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGAELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D  K       HH I+ +G+L     +   +D Q R  +S+NHSATHL
Sbjct: 510 VLKTEAGIFHVEDTHKLGN-AIAHHGILAQGVLAKGDQVEAIVDEQRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I +N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHHIETH 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  ++  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYIEAQQA--------------QHDAKVVEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAGLNGADNKALRGMVDDLKNQLGSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K  ++  VT DL  +  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 790 GNVA-DGKVGLIAGVTNDLTSKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 847

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 848 ALESVDAWIAE 858


>gi|157961024|ref|YP_001501058.1| alanyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|205830206|sp|A8H1T6|SYA_SHEPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157846024|gb|ABV86523.1| alanyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 875

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/908 (42%), Positives = 542/908 (59%), Gaps = 55/908 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPANDPTLLFTNAGMNQFKDVFLGADKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW  LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIHFAWTFLTEELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+YD D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYDTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG P    E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMKPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ +  + G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKAAAILGVTD--LENKSLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG-SAYPELIQAKLLIEETLRS 353
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG  A   L + + ++E++L++
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATESFFYKLVPTLIEVMGADAAKGLQETQAIVEKSLKA 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TL+RGL +LD  L+ L    +L+G+ AFKLYDT+G P+D+  D+   R +  +
Sbjct: 362 EEEQFARTLERGLGILDAALNELA-TNVLDGETAFKLYDTYGFPVDLTADVCRERDIT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+          S    +G  E  +         + F GY  L          
Sbjct: 420 DEAGFEVAMA------AQRSRAQAAGQFETDYNEGLIIDEQSGFTGYTDL---------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V AI + GE V+  V+G  V +V D TPFY E+GGQ GD G 
Sbjct: 464 -------------NNQATVTAIFKAGESVDSIVAGDDVVIVLDNTPFYGESGGQCGDEGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            I DGI   +TD QK       H   V  G ++    +   +D + R +  +NHS THLL
Sbjct: 511 LIADGIEFTVTDTQKYG-QAIGHIGRVATGTVKVGQVVTANVDKKLRHRTELNHSVTHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN  I +N  +   +
Sbjct: 570 HAALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAHELKEVEELVNTQIRRNHELTAEV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+  VRVV++     G  S  LCGGTHV  TG+I L  I SE
Sbjct: 630 MDIETAKEKGAMALFGEKYDSEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ + L+  
Sbjct: 685 GGIAAGIRRIEAVTGAAAMAYVAKQQAQLEEAAALLKGDSASVVAKLKAQLDKTKLLEKE 744

Query: 774 HAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++ K +L              +  V  +   +  VD+  L+ + D L++K+QSGI++L 
Sbjct: 745 LSQLKDKLAAATSADLAGEAVDVNGVKVLVKKLEGVDAGALRGLQDELKQKLQSGIVVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            I+ E K ++++ VT+DL  +  A +L    A  + GG GGGRP MAQ+GG      D A
Sbjct: 805 -IAGEDKVNMIVGVTKDLTGKVKAGELVASIAVQV-GGKGGGRPDMAQAGGSQPENLDAA 862

Query: 889 IAGVASFL 896
           +  V  ++
Sbjct: 863 LEQVIPWI 870


>gi|269965244|ref|ZP_06179378.1| alanyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269830230|gb|EEZ84457.1| alanyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 860

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/911 (41%), Positives = 538/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G       
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTATKG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           SS V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTESGVFHVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKADNLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A   +  Q+ K +               ++ E  ++ + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQNAKYEE--------------KLAESAQKAKALEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   +         ++     +   +   DSK L++++D ++ ++ SG+++L
Sbjct: 730 EVQKLKDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K  ++  VT+DL  +  A DL ++ A+ + GG GGGRP MAQ+GG +     +
Sbjct: 790 ANVTGD-KVGLIAGVTKDLTGKVKAGDLVKMIAEQV-GGKGGGRPDMAQAGGTDVAALPE 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIKTVQPWLEE 858


>gi|91227829|ref|ZP_01262002.1| alanyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91188339|gb|EAS74635.1| alanyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 860

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/911 (41%), Positives = 539/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G       
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTGTKG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           SS V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTESGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKADNLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A   +  Q+ K +               ++ E  ++ + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQNAKYEE--------------KLAESAQKAKALEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   +         ++     +   +   DSK L++++D ++ ++ SG+++L
Sbjct: 730 EVQKLKDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K  ++  VT+DL  +  A DL ++ A+ + GG GGGRP MAQ+GG +     +
Sbjct: 790 ANVTGD-KVGLIAGVTKDLTGKVKAGDLVKMIAEQV-GGKGGGRPDMAQAGGTDVAALPE 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIKTVQPWLEE 858


>gi|209964228|ref|YP_002297143.1| alanyl-tRNA synthetase [Rhodospirillum centenum SW]
 gi|209957694|gb|ACI98330.1| alanyl-tRNA synthetase AlaS [Rhodospirillum centenum SW]
          Length = 898

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/897 (49%), Positives = 583/897 (64%), Gaps = 42/897 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y   
Sbjct: 4   KTANEIRATFLDFFKKNGHAVVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGNETRPYSRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKE+ L 
Sbjct: 64  VTAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEYGLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL +TV+  D+EA  LWKK++G+  D+IIRI T+DNFW M +TGPCGPCSEIFFD G 
Sbjct: 124 KDRLCVTVFHTDDEAADLWKKVAGIGDDRIIRIPTSDNFWMMGDTGPCGPCSEIFFDHGP 183

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQ---QNKQERFILPKMSIDTGMGLERMATVL 237
            I GG PGS+E +G+R+IEIWNLVFMQ+EQ       ER  LPK SIDTGMGLER+A VL
Sbjct: 184 HIAGGPPGSAEQDGDRFIEIWNLVFMQYEQFPKDGGHERVPLPKPSIDTGMGLERLAAVL 243

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           Q   +NYD DL + LI AS   TG   EG + V+HRVI DHLR+ SFLIADG++P+NEGR
Sbjct: 244 QGVHDNYDTDLMRALILASADATGAPPEGAHAVSHRVIADHLRACSFLIADGVMPSNEGR 303

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRAM +A +LG  +P+M  L+PAL  EMG  Y EL +A+ LI ETLR E+ +
Sbjct: 304 GYVLRRIMRRAMRHAHMLGAKDPVMYRLVPALVREMGGHYTELQRAQPLITETLRLEETK 363

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TLDRGL LLD     L   + L+G VAF LYDT+G PLD+ QD+L      G+D+  
Sbjct: 364 FKQTLDRGLRLLDEEEGRLAPGQALSGQVAFTLYDTYGFPLDLTQDVLR-GRQRGVDVDG 422

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN A+EEQR +ARA   G G   TE++WF LK++ GAT+F+GYD                
Sbjct: 423 FNAAMEEQRRKARAAWAGSGEAATERVWFELKDEVGATEFLGYD---------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                  T    + V A++   G  ++ A +GQ+V VV +QTPFY E+GGQ+GD+G    
Sbjct: 467 -------TEMAEAKVTALLDPAGTRLDRAAAGQEVIVVVNQTPFYGESGGQVGDSGVLFS 519

Query: 537 DGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            G   + + D QKK   ++ H   V RG +     + L +D   R  +  NHSATHLLH 
Sbjct: 520 AGGAEVAVRDTQKKLGAVWAHIGAVTRGTIAVGDVVELRVDGARRADIRANHSATHLLHE 579

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS + P+ LRFD++   P+++ +++ +E  VN  I  N  V TR+M+
Sbjct: 580 ALRRRLGEHVTQKGSLVAPERLRFDISQPTPLSAEDVQVVEAEVNRRILGNSEVTTRLMS 639

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVS 712
            + AI  GA AL G KY + VRVVS+   D G     S  LCGGTHV  TG+I L  IVS
Sbjct: 640 PDAAIELGAMALFGEKYGEEVRVVSMGGVDAGGNKEFSVELCGGTHVRRTGDIGLFKIVS 699

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E ++ AG+RRIEA+TG+ A S+L  Q+ +L   AS LKV    V  +V  + EE R+L+ 
Sbjct: 700 EGAVAAGVRRIEAMTGRGALSYLDEQEGRLIQAASALKVPPAEVPAKVAALVEERRRLEK 759

Query: 773 IHAKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             A  + Q+             +  ++  V  ++ ++ ++ +K+LK + D L+K++ SG+
Sbjct: 760 ELADLRRQVALGGGGAGPAAAAAVKEVGGVKLLARVLPDLPAKDLKPLADDLKKQVGSGV 819

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           ++ +    + K S+++ VTEDL  R +AVDL R  +  +GG GGGGRP MAQ+GGP+
Sbjct: 820 VVAIS-QADGKGSIVVGVTEDLAGRLSAVDLVRAGSAAMGGKGGGGRPDMAQAGGPD 875


>gi|300692180|ref|YP_003753175.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07]
 gi|299079240|emb|CBJ51912.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07]
          Length = 880

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/917 (41%), Positives = 541/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GLS ++++RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWATVYHNDDEAYDIWTKVIGLSPERVVRIGDNKGAPYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGM 228
           IF+D G  + GG PGS E +G+RYIEIWN VFMQF++Q   +        LP   +DTGM
Sbjct: 181 IFYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPQTGEYTLTPLPAPCVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A +LQ   +NY+IDLF+ L+ A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 241 GLERLAAILQHVHSNYEIDLFQALVGAAARETNTKDLANN--SLRVIADHIRACSFLIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + 
Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVEDLVTQMGEAYPELREARDRVV 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT+G PLD+ QD+  
Sbjct: 359 DVLRTEEARFFETIEHGMSILDGALGELKATGGKMLDGELAFKLHDTYGFPLDLTQDVCR 418

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 +D  +F+ A+  QR +ARA      +        SL      T F GYD L   
Sbjct: 419 E-NDVIVDEAAFDAAMNRQREQARAAGKFKMAAG------SLDYTGDKTTFHGYDQLLSE 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 +S V A+   G  V+E   GQ   VV D TPFYAE+GG
Sbjct: 472 ----------------------TSRVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 509

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D QK    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 510 QVGDEGTLKAATVWFDVADTQKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG+HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 570 HSATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEILAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                ++M  +DA+ SGA AL G KY D VRV+++        S  LCGGTHV+ TG+I 
Sbjct: 630 ASTGAQMMGFDDAVKSGAMALFGEKYGDEVRVLTIGS------SKELCGGTHVARTGDIG 683

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 684 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRISEAAAALRAQPSELTQRIVQVQDQ 743

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K++
Sbjct: 744 VKSLEKELERLKSKLASAQGDELAEQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  +S E K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 804 TAAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 861

Query: 882 GNKADQAIAGVASFLKK 898
            +K  QA+AGV +++++
Sbjct: 862 PDKLPQALAGVTAWVQQ 878


>gi|332140622|ref|YP_004426360.1| alanyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550644|gb|AEA97362.1| alanyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 865

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/901 (42%), Positives = 534/901 (59%), Gaps = 48/901 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  F+ +F+ +GH+ + SSSL+P +DPTL+FTN+GM  FK+ F G EK  Y    
Sbjct: 4   STADLRNKFINYFKSHGHQAVASSSLVPADDPTLLFTNAGMNQFKDTFLGTEKRSYTRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ AW+ LT E  L +
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEAIEFAWNFLTSEVGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY ED+EAF +W+   G+  +KIIRI+T+DNFWSM +TGPCGPCSEIF+D G  
Sbjct: 124 EKLLVTVYSEDDEAFDIWENHIGVPKEKIIRISTSDNFWSMGDTGPCGPCSEIFYDHGAH 183

Query: 183 IPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG P    E+G+R+IEIWNLVFMQF +Q       LPK SIDTGMGLER++ +LQ   
Sbjct: 184 IWGGPPGTPEEDGDRFIEIWNLVFMQFNKQADGTMEPLPKPSIDTGMGLERISAILQNVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+IDLF++LI+++  + G +       + RVI DH+RS SFLI DG++P+NEGRGYVL
Sbjct: 244 SNYEIDLFQNLIKSAASIVGTED--LENKSLRVIADHIRSCSFLICDGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  +     L+ +L  EMG AYPEL+    +IE+ LR E+E+F KT
Sbjct: 302 RRIIRRAVRHGYQLGANDIFFYKLVASLANEMGEAYPELVDQLPVIEKVLRVEEEQFSKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG+ +L+  L+ L   + + GDV FKLYDT+G P D+  D+     L  ID   F  A
Sbjct: 362 LARGMAMLNDTLASLE-GDTVPGDVVFKLYDTYGFPTDLTNDVAREHELK-IDEEGFEAA 419

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++         +    +      + S       T F GY  + G                
Sbjct: 420 MQ------AQRARAQQASNFGADYNSKLAIDHTTSFTGYTDVEG---------------- 457

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   + V  ++     VE+   GQ+  VV D TPFYAE+GGQ GD G         
Sbjct: 458 -------QANVVELIADNAFVEKLEDGQEGVVVLDSTPFYAESGGQAGDKGVLRVANGEF 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +TD QK        H  + +G +    +    ID  NR  +  NHSATHLLH AL  IL
Sbjct: 511 IVTDTQKMGNAF--AHKGIAKGSVSKGDTATAAIDSANREAIKKNHSATHLLHAALREIL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV+Q GS +    +RFD +H + +T+ +L  IE  VN  I  N  + T +M+ E+A A
Sbjct: 569 GEHVTQKGSLVEAPRMRFDFSHFEAVTTEQLAEIERRVNQEIRANHSLATELMDLEEAKA 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL G KY+++VRVV++     G  S  LCGGTHV+ TG+I L  I SE+ I +G+R
Sbjct: 629 SGAMALFGEKYDEKVRVVTM-----GPFSVELCGGTHVARTGDIGLFKITSEAGIASGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+TG++A   +  Q   L SL+S LK    NV+ RV  +  + ++L+      K +L
Sbjct: 684 RIEAVTGEQAIEVVQTQQATLSSLSSLLKTDSQNVLERVVSLQNQTKELEKALNSAKQKL 743

Query: 782 NVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             +       +  +I  V  +   +  V++K L+S+MD ++ +I  GI++L G++   K 
Sbjct: 744 ASQQGADMLSNAVEINGVKVLIANLEGVEAKSLRSMMDDIKNRIGEGIVVL-GVANNAKV 802

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +++  VT++L D+  A +L    A  + GG GGGRP MAQ+GG       QA+  V  +L
Sbjct: 803 NLIAGVTKNLTDKVKAGELVNFVASQV-GGKGGGRPDMAQAGGDKPENLGQALDSVNVWL 861

Query: 897 K 897
           +
Sbjct: 862 Q 862


>gi|320539040|ref|ZP_08038714.1| alanyl-tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320030880|gb|EFW12885.1| alanyl-tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 875

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/910 (41%), Positives = 552/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHEAISYAWELLTGEDWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++T+Y+ D+EAF +W+K  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTIYETDDEAFDIWQKHIGVPAERIIRIGYNKGAAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGAMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ    NY+IDLF+ LI    +VTG      +  + RVI DH+R+ +FL++DG+ 
Sbjct: 243 RIAAVLQHVNANYEIDLFRTLISVVAKVTGATD--LDNKSLRVIADHIRACAFLVSDGVS 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNESRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVVPLIEVMGSAADELKRQQSRVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   E L+G++AF+LYDT G P+D+  D+   RGL 
Sbjct: 361 KTEEEQFARTLERGLALLDDELNKLQ-GETLDGEIAFRLYDTFGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S           + ++    G+++F GYD          
Sbjct: 420 -VDEAGFQQAMEAQRRRARESSGFC------ADYNTMIRVDGSSRFSGYDYEEQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             ++V A+ + G+ VE+  +G++  VV D TPFY E+GGQ+GD 
Sbjct: 467 -----------------QAMVIALFRDGQPVEQINAGEEAVVVLDGTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          ++D QK       H   + +G L+ +  +   ID + R ++ +NHSATH
Sbjct: 510 GVLKAARADFVVSDTQKYG-QATGHLGKLSQGSLKVKDRVDAQIDTERRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN  + +NL V T
Sbjct: 569 LLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHYEAMKPEQIRRVEDLVNQQVRRNLLVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ +DA   GA AL G KY+D VRV+++     G  S+ LCGGTH S TG+I L  IV
Sbjct: 629 EVMSLDDAKEKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHTSRTGDIGLFSIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AG+RRIEA+TG+ A + L  Q + L+ +A  +K    N+  ++    +  R L+
Sbjct: 684 TESGTAAGVRRIEAVTGEGAIAKLHQQSDLLQVVAHLVKGDSSNLADKLHATLDRTRLLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +        +  V  +   +  V++K L+ ++D L+ ++ S II+
Sbjct: 744 KELQQLKDQQAAQESASLSSQAKVVNGVKLLVSQLDNVEAKMLRIMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S++  VT+DL DR  A +L    A+ +  G GGGRP MAQ+GG + +   
Sbjct: 804 LATTA-DDKVSLIAGVTKDLTDRVKAGELIGNVAQQVA-GKGGGRPDMAQAGGTDVSALP 861

Query: 887 QAIAGVASFL 896
            A+  V +++
Sbjct: 862 AALNSVEAWV 871


>gi|167645359|ref|YP_001683022.1| alanyl-tRNA synthetase [Caulobacter sp. K31]
 gi|205830018|sp|B0SZN4|SYA_CAUSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167347789|gb|ABZ70524.1| alanyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 883

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/907 (49%), Positives = 587/907 (64%), Gaps = 37/907 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F    H ++PS+ L+P NDPTL+F N+GMVPFKN+FTG E P +  
Sbjct: 1   MPSLNEIRSTFLNYFGAADHAIVPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPPHPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT++F L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTRDFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D EA  LWKKI+GLS D+IIRI TNDNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYHTDTEAADLWKKIAGLSDDRIIRIATNDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG P    E+G+R+IEIWNLVFMQFEQ    ER  LPK SIDTGMGLER+A V+Q 
Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQFEQMAGGERVSLPKPSIDTGMGLERIAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI AS ++TG++ EG    +HRVI DHLRSSSFL+ADG+ P+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIAASVELTGVRAEGAQAPSHRVIADHLRSSSFLLADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L P L  +MG AYPEL +A+  I ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGANEPLMHRLAPTLVAQMGQAYPELRRAEASIVETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ LLD   + L    +L+G+ AFKLYDT+G PLD+ QD + ARG+  +D   F+
Sbjct: 361 VTLGRGMGLLDEATAGLSAGGVLDGETAFKLYDTYGFPLDLTQDAVRARGIT-VDTDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ ARA+  G G       WF +KE+ G T F+GYD                  
Sbjct: 420 VAMDRQRTMARANWAGSGQTGAAAAWFGIKEQSGPTNFVGYDTTE--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    +  VKAIV  G  VE A +G  V+V+ D+T FYAE+GGQ GDTG     G+
Sbjct: 465 --------TTGTVKAIVLDGAPVEAAQAGASVDVLLDRTSFYAESGGQAGDTGVIEAHGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD QK+A  ++VH      G L+   S+V ++D   R     NHSA HL+H AL  
Sbjct: 517 ESRVTDTQKQAGDLYVHRV-ELAGPLKVGDSVVASVDAARRTTTRANHSAAHLVHAALHH 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  D +RFD +H  P+T+ E++ IE  VN +I QN+P  T+ M  ++A
Sbjct: 576 VLGPHVAQKGQMVDGDRMRFDFSHGGPLTADEIERIEAEVNAVIRQNVPAQTKEMAPQEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++     E G  +S  LCGGTHV+ TG+I L  IVSE  +
Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGESLTETGKAYSVELCGGTHVARTGDIALFKIVSEQGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA+TG+ AR  L+ Q    K+LA   K     V+ RV+ +  E + L+   A+
Sbjct: 696 ASGVRRIEALTGEAARRFLLDQAGVAKALADQFKTPVAEVLARVDALVAERKALERQLAE 755

Query: 777 RKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVG 829
            K QL +   S         +A    ++ ++  V  KEL+ V +  +K++ + G++ LVG
Sbjct: 756 AKKQLALGGGSGGAASGPEDVAGTALIARVLDGVGGKELRGVAEEFKKQLTNGGVVALVG 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + KA+V + VT DL  +F+A DLA+ +   +GG G GG+   AQ G P+  KA   +
Sbjct: 816 VT-DGKAAVTVAVTADLTAKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDATKAQAGL 874

Query: 890 AGVASFL 896
             + + L
Sbjct: 875 DAIKAAL 881


>gi|242238445|ref|YP_002986626.1| alanyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242130502|gb|ACS84804.1| alanyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 875

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 548/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAILNAWELLTGPQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W  + G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYDIWANVVGIPQERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+ID+F+ LI  + +V G +    N  + RVI DH+RS +FLIADG++
Sbjct: 243 RVSAVLQHVNSNYEIDVFRTLIAEAAKVVGTRD--LNNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL   + ++E  L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLIDVMGSAADELRTQQTVVELAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE+E+F +TL+RGL LLD  +  L   + L+G+ AF+LYDT+G PLD+  D+   RGL 
Sbjct: 361 KSEEEQFARTLERGLSLLDEEIRTLQ-GDTLSGEAAFRLYDTYGFPLDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RAR              + SL     AT F GYD          
Sbjct: 420 -VDETGFEREMEAQRQRAREA------SGFGADYNSLIRVDSATTFCGYDHAEQR----- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ ++GE V+E  +G +  V+ D+TPFY E+GGQ+GD 
Sbjct: 468 ------------------SHVVALYRKGEPVQEISAGDEAVVILDETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK     F H   + +G LR   ++   +D   R ++ +NHSATH
Sbjct: 510 GVLKGVSAYFVVDDTQKYGR-AFGHVGKLTQGSLRVNDAVDAVVDDVRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +    LRFD +H + +   E++ +ED VN  + +NLPV T
Sbjct: 569 LLHAALRQVLGTHVAQKGSLVNDRYLRFDFSHPEAMKPDEIRQVEDIVNAQVRRNLPVDT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  +DA A GA AL G KY+D+VRV+++     G  S  LCGG H   TG+I L  IV
Sbjct: 629 AIMAIDDARAKGAMALFGEKYDDQVRVLTM-----GDFSIELCGGIHARRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L+ +   +K    N++ +V  + E  R L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAVASLHHQSDLLQDVTLLVKGDANNLIEKVRSLLERNRGLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ S        I  V  +   +S V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELLQLKEQQAAQESSSLAGKAKDINGVKLLVTQLSNVEPKMLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     E K S++  VT+ L +R  A +L    A  + GG GGGRP +AQ+GG + +   
Sbjct: 804 L-STIVEGKVSLIAGVTQGLTERVKAGELVGFVANQV-GGKGGGRPDLAQAGGSDADALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 SALASVEAWV 871


>gi|88706721|ref|ZP_01104423.1| Alanyl-tRNA synthetase [Congregibacter litoralis KT71]
 gi|88699042|gb|EAQ96159.1| Alanyl-tRNA synthetase [Congregibacter litoralis KT71]
          Length = 867

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/903 (41%), Positives = 535/903 (59%), Gaps = 46/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL  F+ +GH+ +PSSSL+P +DPTL+FTN+GM  FK++F G E   Y   
Sbjct: 1   MKTGEIREAFLAHFESHGHQRVPSSSLVPADDPTLLFTNAGMNQFKDVFLGAETRSYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT E  L 
Sbjct: 61  VSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRFAWDFLTVELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L++TV+  D+EA K+W +  G  A++I R+   DNFW M +TGPCGP SE+F+D GE
Sbjct: 121 REKLWVTVHITDDEAEKIWIEDIGFPAERISRL-DEDNFWQMGDTGPCGPSSEVFYDHGE 179

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS ++  +RYIEIWNLVFMQ+ +    E   LPK S+DTGMGLER+A +LQ  
Sbjct: 180 DVPGGPPGSPDDDLDRYIEIWNLVFMQYNRSADGEMAPLPKPSVDTGMGLERIAAILQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLF+ LIQ++ ++ G         + RVI DH+RSS+FLI DG+LP NEGR YV
Sbjct: 240 HSNYDIDLFQALIQSAAEMVGTDD--LKASSLRVIADHIRSSAFLIIDGVLPGNEGRSYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRA+ +   LG        L+P+L  EMG  YPEL + +  IE+ +R E+E+F +
Sbjct: 298 LRRIMRRAIRHGNKLGADALFFHKLVPSLVAEMGDFYPELREQQTRIEDVIRGEEEQFAR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++G+V+L+  L+ +    ++ GDV FKLYDT G P+D+  DI   R  + +D+  +  
Sbjct: 358 TLEQGMVILNEALAEMS-GTVIPGDVVFKLYDTFGFPVDLTNDIARERDFS-LDMEGYEA 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A++ QR R++        G     +       G T F GYD                   
Sbjct: 416 AMQAQRERSKEG------GAFAVDYNRTLTLDGETLFTGYDE------------------ 451

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                +  S  V A+++ GE V    +G    V+ D+TPFY E+GGQ GD+G    +G+R
Sbjct: 452 -----STGSGTVVALLRDGEEVNALTAGDNGIVILDRTPFYGESGGQAGDSGYLRSNGLR 506

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           L+I+D   KA G  +HH  V  G +    ++   ID   R++  +NHSATHLLH AL   
Sbjct: 507 LEISDT-TKARGHHLHHGKVLEGSIALGDTVECEIDNAIRQKTRLNHSATHLLHAALRYE 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +    LRFD ++ + +T  +L+++ED+VN  I  N+ V T+IM+ ++A 
Sbjct: 566 LGDHVAQKGSLVDGQRLRFDFSNPEAMTPEQLRAVEDSVNAQIRANVEVTTQIMSMDEAR 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY D VRV+++        S  LCGGTHV  TG+I +  I+SE  + +G+
Sbjct: 626 EAGAMALFGEKYGDEVRVLTMGE---NGFSVELCGGTHVERTGDIGMFRILSEGGLASGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A   +   D  L  +   L+ +  NV  +V  +  + R L+   A+ K +
Sbjct: 683 RRIEAVTGEHALREMRTVDHALGEVCELLRATTDNVRDKVAALRSQNRDLEKELARLKQK 742

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S   +  V  ++  +   D   L+ +MD  + K+ SG+I+L  +  + K
Sbjct: 743 LASSAGSDITASAIDVDGVKVLAAAVDGADPGALRGIMDQCKNKLGSGVILLAAV-NDDK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            +++  VT+DL +R  A DL R  A  LGG G GGRP MAQ GG        A+  V ++
Sbjct: 802 VALVAGVTKDLTERVRAGDLMREFAGRLGGKG-GGRPDMAQGGGTEPALLPAALEAVPAW 860

Query: 896 LKK 898
           + +
Sbjct: 861 VAE 863


>gi|149190613|ref|ZP_01868882.1| alanyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148835611|gb|EDL52579.1| alanyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 861

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/906 (41%), Positives = 537/906 (59%), Gaps = 58/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P +DPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHDDPTLLFTNAGMNQFKDCFLGLEKRNYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF++W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFEIWNKQIGVPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHVDGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  Y+  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEVIG--YQDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L + MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGTLASVMGSAGEELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L   L +LG +++L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMTILTEALDNLGDEKVLDGETVFKLYDTYGFPADLTNDVAREREFT- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR RAR        G     + +  +    T+F GY    G       
Sbjct: 420 IDEEGFEKAMEAQRQRAREA------GQFGTDYNAAIKVDTDTEFCGYTGTEG------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           SS V A+  +G  V+   +G K  VV +QTPFYAE+GGQ GD G
Sbjct: 467 ----------------SSSVAAMFVEGAEVDALSAGDKAIVVLEQTPFYAESGGQCGDAG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK       HH  +  G+L     +   +D Q R  +S+NHSATHL
Sbjct: 511 VLKTAAGLFKVEDTQKLGN-AIAHHGELVEGVLAKGDEVDAIVDAQRRAAISLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD +H + +T AE+K +E  VN  I  N  + T 
Sbjct: 570 LHAALRQVLGEHVTQKGSLVKPDNLRFDFSHLEAMTKAEIKEVERLVNAQIRTNHVIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A A GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 630 VMDIESAKAKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  + +           +   + + + +E ++L+ 
Sbjct: 685 EGGIAAGIRRIEAVTGEAALDAIEAQASQYEE-------KLTDAASKAKSLEKEIQQLKD 737

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A  +    +      +IA    +   +   DSK L+++MD  + ++ SGI  +  ++ 
Sbjct: 738 KLAAVESANIMG--KVEEIAGTQVLVAALEGADSKNLRTMMDNAKNQMGSGIAFIANVA- 794

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A DL ++ A+ + GG GGGRP MAQ+GG +     +A+  +
Sbjct: 795 DGKIGLIAGVTKDLTGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVEALPEALKSI 853

Query: 893 ASFLKK 898
            S+L++
Sbjct: 854 RSWLEE 859


>gi|17545516|ref|NP_518918.1| alanyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|20532248|sp|Q8Y193|SYA_RALSO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|17427809|emb|CAD14499.1| probable alanyl-trna synthetase (alanine--trna ligase) (alars)
           protein [Ralstonia solanacearum GMI1000]
          Length = 884

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/921 (41%), Positives = 537/921 (58%), Gaps = 63/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 121 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGM 228
           IF+D G  I GG PGS E +G+RYIEIWN VFMQF++Q   +        LP   +DTGM
Sbjct: 181 IFYDHGPEIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPQTGEYTLTPLPAPCVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ L+ A+ + T  K   NN  + RVI DH+R+ +FLI D
Sbjct: 241 GMERLAAILQHVHSNYEIDLFQALVSAAARETNTKDLANN--SLRVIADHIRACAFLIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + 
Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVKEMGEAYPELREARDRVV 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL------GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           + LR+E+ RF +T++ G+ +LDG L  L       K  +L+G++AFKL+DT+G PLD+ Q
Sbjct: 359 DVLRTEEARFFETIEHGMSILDGALGELKAAGKDEKQRMLDGELAFKLHDTYGFPLDLTQ 418

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           D+        +D  +F+ A+  QR +ARA      +  T      L      T F GYD 
Sbjct: 419 DVCRE-NDVIVDEAAFDAAMNRQREQARAAGKFKMAAGT------LDYTGDKTTFHGYDQ 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                         +S V A+   G  V E   GQ   VV D TPFYA
Sbjct: 472 LLSE----------------------TSRVTALFVDGASVPEMRPGQTGVVVLDHTPFYA 509

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+GD G      +   + D QK    +F H   +  G+L+   ++   +D   R +
Sbjct: 510 ESGGQVGDQGTLKAATVWFDVADTQKVLPEVFGHQGTLRTGVLKVGDAVGAEVDAVRRAR 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHSATHL+H AL  +LG+HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  
Sbjct: 570 TMRNHSATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNTPMTPLQIREVEARVNAE 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I  N     ++M  +DA+ SGA AL G KY D VRV+++        S  LCGGTHV+ T
Sbjct: 630 ILANASTNAQMMGFDDAVKSGAMALFGEKYGDEVRVLTIGS------SKELCGGTHVART 683

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ +
Sbjct: 684 GDIGLFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRIGEAAAALRAQPSELTQRIVQ 743

Query: 763 IWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + ++ + L+    + K +L              +A +  ++  +   D+K L+  MD L+
Sbjct: 744 VQDQVKSLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLK 803

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            K+++  I+L  +S + K +++  VT D   R  A +L    A+ + GG GGGRP MAQ+
Sbjct: 804 DKLKTAAIVLGSVS-DGKVALIAGVTADATARIKAGELVNFVAQQV-GGKGGGRPDMAQA 861

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG   +K  QA+AGV +++++
Sbjct: 862 GGTEPDKLPQALAGVTAWVQQ 882


>gi|56460839|ref|YP_156120.1| alanyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|81599943|sp|Q5QUV7|SYA_IDILO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56179849|gb|AAV82571.1| Alanyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 865

 Score =  901 bits (2328), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/903 (41%), Positives = 549/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + IR  FL +F + GHE +PS+S+IP NDPTL+FTN+GMVPFK++F G +K  Y   
Sbjct: 3   MNSAQIRDAFLNYFAERGHEKVPSASMIPGNDPTLLFTNAGMVPFKDVFLGTDKRRYDKA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+C+RAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK++AIQ AWD LTKE  L 
Sbjct: 63  TSAQRCLRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKQAIQYAWDFLTKELKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L++TV+ ED+EA+ +W K  G+  D+I RI   DNFWSM +TGPCGPCSE+F+D GE
Sbjct: 123 AEKLWVTVFTEDDEAYDIWVKDIGVPEDRISRIGEKDNFWSMGDTGPCGPCSEVFYDHGE 182

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG P    E+G+RYIEIWNLVFMQ+ +Q       LP  SIDTGMGLER++ ++Q  
Sbjct: 183 EVWGGPPGTPEEDGDRYIEIWNLVFMQYNRQADGTLEPLPDPSIDTGMGLERISAIMQNV 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI+A+ ++ G      +  + RVI DH+RS SFLI DG++P+NEGRGYV
Sbjct: 243 HSNYEIDLFQALIKAAAEIIGTND--LDNKSLRVIADHIRSCSFLITDGVMPSNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +  LLG  +     L+  L  +MG AYPEL Q K +I++ L  E+++F +
Sbjct: 301 LRRIIRRAVRHGHLLGAKDTFFFRLVDELARQMGEAYPELEQKKQIIKDALEREEQQFAR 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L   +  L    ++ GDV FKLYDT+G P+D+  DI   + L  ID   F Q
Sbjct: 361 TLERGLAILSDEIGELK-GNVIPGDVVFKLYDTYGFPVDLTADIAREQELT-IDEQGFEQ 418

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+      +        +      +    +    T F GYD + G               
Sbjct: 419 AM------SEQRQRAQQASQFGMDYNQQLKSDNKTAFTGYDDVVG--------------- 457

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V  + + G+ VE+  +G+   VV  +TPFYAE+GGQ+GD G  + +G  
Sbjct: 458 --------QAKVVELFKDGKPVEQLQAGENGIVVLSETPFYAESGGQIGDKGVLVANGPA 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++TD Q   + I   H  V +  ++   S+   ID + R  +  NHSATHLLH AL  +
Sbjct: 510 FEVTDTQYIGKAI--AHHGVAKAAVKLSDSVKAEIDSERRENIKRNHSATHLLHAALRNL 567

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  D +RFD +H +P+T+ +L  +E  VN  +  NLP+ T++M  ++A 
Sbjct: 568 LGEHVTQKGSLVEADKMRFDFSHFEPVTTEQLAQLEREVNAQVRANLPLQTQLMAIDEAK 627

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY+++VRVV +     G  S  LCGGTHV +TG+I L  I SE  I +G+
Sbjct: 628 EAGAMALFGEKYDEQVRVVRM-----GDFSMELCGGTHVKATGDIGLFRITSEGGIASGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIE +TG+ A  +   Q   L+ +A  LK    +V  +V+++  ++R+L+  + + + +
Sbjct: 683 RRIEVVTGEAAVRYTQQQQSVLQQIAGELKTEPSSVAEKVQQLQHKFRELERKNEQLQQK 742

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  +           I  V  +   + + D K L+ ++D L+ ++ SGI++L G +   K
Sbjct: 743 LAQQAGGGLIAQAVDINGVKAIIAELDQADPKSLRGLVDDLKNQMGSGIVLL-GTANGDK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT DL  +  A D+   +A V+ GG GGGRP MAQ+GG    + ++A+A   ++
Sbjct: 802 VSLIAGVTTDLTSKVKAGDIVNQAANVV-GGKGGGRPDMAQAGGSLPEQLNEALATATTW 860

Query: 896 LKK 898
           L++
Sbjct: 861 LQQ 863


>gi|113969471|ref|YP_733264.1| alanyl-tRNA synthetase [Shewanella sp. MR-4]
 gi|123130634|sp|Q0HL60|SYA_SHESM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|113884155|gb|ABI38207.1| alanyl-tRNA synthetase [Shewanella sp. MR-4]
          Length = 874

 Score =  901 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/909 (41%), Positives = 551/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+     +  + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTD--LSNKSLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L   ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDSALNELQ-GDTLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYSELTG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ V A+   GE V    +G    VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------NAKVTALYLNGESVPAINAGDDAVVVLDVTPFYAESGGQVGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  GI   ++D QK  +        +  G L     L   +D + R +  +NHS THLLH
Sbjct: 511 VAQGIEFAVSDTQKFGQASGHK-GTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKAQLDKMKQLEKDM 744

Query: 775 AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + K +L     +        +  VN +   +  V++  L+ + D L++K++S +I+L G
Sbjct: 745 QQLKDKLAAAASADLACDAVVVNGVNVLIKKLDGVEAGALRGLQDELKQKLKSAVILL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           + V  ++ +
Sbjct: 863 SQVLPWITE 871


>gi|312115730|ref|YP_004013326.1| alanyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220859|gb|ADP72227.1| alanyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 894

 Score =  901 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/911 (49%), Positives = 616/911 (67%), Gaps = 39/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS ++ IR TF++FF+KNGHE +PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y+ 
Sbjct: 1   MSTLNEIRGTFIDFFRKNGHEHVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGMETLPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW L+TKE+ L
Sbjct: 61  AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWTLVTKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D++RL +TV+ ED++A  LWKKI+GL  D+IIRI T+DNFWSM ETGPCGPCSEIFFD G
Sbjct: 121 DKKRLLVTVFSEDDDAHALWKKIAGLPDDRIIRIPTSDNFWSMGETGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS   +G+R+IEIWNLVFMQ+EQ +K ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 PKVPGGPPGSEDADGDRFIEIWNLVFMQYEQVSKTERLDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD DLF+ LI+AS   TG+  EG  + +HRVI DHLR+S+FLIADG+LP+NEGRGY
Sbjct: 241 VHNNYDTDLFQALIRASVDATGVPAEGAALPSHRVIADHLRASAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM ++ LLG  EPL+  LLP L  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHSHLLGAEEPLLYRLLPVLVREMGQAYPELVRGQALIGETLKIEEVRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LLD     LG  +  +GDVAFKLYDT+G PLD+ QD L AR    +DI  FN
Sbjct: 361 RTLARGLSLLDDASGSLGAGDTFSGDVAFKLYDTYGFPLDLTQDALKARS-ISVDIKQFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ AR    G G   T+K+WF + ++ GAT+F+GY+                  
Sbjct: 420 AAMAQQKAEARKAWAGSGEAATDKVWFDVLDQAGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                T      + AIV+ G+ V++  +G++  ++ +QTPFY E+GGQ+GD G  I    
Sbjct: 462 -----TEAAEGQIVAIVKDGKPVKQLKTGEEGILILNQTPFYGESGGQVGDRGVIIAPKS 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +++ QKK   +F H   V++G L+   ++ + +D+  R  +  NHSATHLLH AL 
Sbjct: 517 AHFDVSETQKKLGKLFAHVGTVKKGPLKVGDAVEMQVDHARRTAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS + PD LRFD +H KP++  EL ++E+  N ++ ++ PVVTR+M  +D
Sbjct: 577 ETLGTHVTQKGSLVDPDKLRFDFSHPKPLSKEELAAVEELANAVVLRDSPVVTRLMAVDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSE 713
           A+A+GA AL G KY + VRVVS+   +         S  LCGGTHV +TGEI L+ +V E
Sbjct: 637 AVAAGAMALFGEKYGEEVRVVSMGEANHDERGSRAFSVELCGGTHVRATGEIGLVKVVQE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +++ AG+RRIEA+T   AR HL  Q+  L+  A  L+V+   V  R++ + +E +KL+  
Sbjct: 697 TAVAAGVRRIEALTANAARLHLSHQEAALRQAAELLRVAPSEVPARLQNLIDERKKLERE 756

Query: 774 HAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            A  K ++ +         +    ++ DV   +  +  +  K+L+S++D  +++I SGI+
Sbjct: 757 LADAKKKIALGTGGDQAGAENPVRQVGDVTMFARTVQGIQPKDLRSLVDDGKRQIGSGIV 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            +VG++ + KA +++ VT DL   ++AVDL +  A  +GG GGGGRP +AQ+GGPNG  A
Sbjct: 817 AIVGVTDDGKAGIVVGVTGDLTKHYSAVDLVKAGAAAVGGQGGGGRPDLAQAGGPNGANA 876

Query: 886 DQAIAGVASFL 896
           + A+  +A  L
Sbjct: 877 EAALNAIAECL 887


>gi|28899322|ref|NP_798927.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839216|ref|ZP_01991883.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|260878987|ref|ZP_05891342.1| alanine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|260895460|ref|ZP_05903956.1| alanine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|260903524|ref|ZP_05911919.1| alanine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|31076994|sp|Q87LR3|SYA_VIBPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28807546|dbj|BAC60811.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747281|gb|EDM58267.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|308088224|gb|EFO37919.1| alanine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|308090433|gb|EFO40128.1| alanine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308108704|gb|EFO46244.1| alanine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|328474145|gb|EGF44950.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 860

 Score =  901 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/911 (41%), Positives = 538/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTDVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY            
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNAAIKVDTQTEFCGY------------ 460

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                      +    SS V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 461 -----------VGTKGSSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTEAGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A   +  Q  K +               ++ E  ++ + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQAAKYEE--------------KLAESAQKAKTLEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   +         ++     +   +   DSK L++++D ++ ++ SG+++L
Sbjct: 730 ELQKLKDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + +   +
Sbjct: 790 ANVT-DDKVGLIAGVTKDLVGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVSALPE 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIKTVQPWLEE 858


>gi|323137975|ref|ZP_08073049.1| alanyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
 gi|322396694|gb|EFX99221.1| alanyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
          Length = 889

 Score =  901 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/908 (49%), Positives = 602/908 (66%), Gaps = 35/908 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F +NGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK     
Sbjct: 1   MSGVNQIRSAFLDYFVRNGHEKVASSPLVPHNDPTLMFTNAGMVQFKNVFTGVEKRHQAR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L
Sbjct: 61  AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEGAIELAWGLITKEFSL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +D+EAF LWKKI+G    +IIRI ++DNFWSM +TGPCGPCSEIF+DQG
Sbjct: 121 PVEKLLVTVYHDDDEAFDLWKKIAGFHDSRIIRIASSDNFWSMGDTGPCGPCSEIFYDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQ+EQ    +R  LP+ SIDTGMGLER+A ++Q 
Sbjct: 181 ETLTGGPPGSPGEDGDRFLEFWNLVFMQYEQVAPGQRAPLPRPSIDTGMGLERIAALMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NY+IDLF+ L  A  + TG    G    +HRVI DHLR+SSFL+ADG+ P+NEGRGY
Sbjct: 241 VTSNYEIDLFRSLTGAVAEYTGAPVGGPQGASHRVIADHLRASSFLVADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A++LG  EPLM  L+P L  EMG AYPEL++A+ LI +TL++E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQILGAQEPLMWRLVPTLVAEMGQAYPELVRAQALIVDTLKTEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL +LD   ++LG+ + L+G+ AFKLYDT+G PLD+ +D L  RG  G+D  +FN
Sbjct: 361 ATLARGLAILDDETANLGRGDKLSGETAFKLYDTYGFPLDLTEDALRPRG-VGVDKEAFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ AR    G G   TE +WF+LKE+ G T+F+GY+                  
Sbjct: 420 AAMERQRAEARKAWAGSGETATETLWFALKERLGTTEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V AIV  G        G +  V+ +QTPFY E+GGQ+GD G   G  +
Sbjct: 462 -----TEKSEGVVSAIVHDGAEAFVLKQGARGAVILNQTPFYGESGGQVGDVGVMRGRNV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ + QKK   + VH  +VE G +   + L L +D++ RR    NHSATH+LH AL  
Sbjct: 517 RFRVENTQKKLGDLIVHEGVVEEGEIVPGVVLELDVDHERRRATRANHSATHILHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD TH KP+T  EL  +E   N+I+  N PV TR+M ++DA
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDFTHPKPLTEEELARVEALANEIVQDNAPVDTRLMAQDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I SGA AL G KY D VRVVS+   D GV    S  LCGGTHVS TG+I L+ IV E ++
Sbjct: 637 IRSGARALFGEKYGDEVRVVSMGRPDPGVAHPFSVELCGGTHVSRTGDIGLISIVGEGAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA T + ARS L+ Q   L+ +AS ++        R+ ++ EE ++L+   A 
Sbjct: 697 ASGVRRIEARTAEGARSQLVAQSRALREIASLIRAPMEEAPARLGQLLEERKRLERDLAD 756

Query: 777 RKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + +L +   S          +A V  ++  +  VD+K+LKS++D  +K I SG++    
Sbjct: 757 ARRKLAMGGGSGNGGGQEWRDVAGVKLLTRAVDGVDAKDLKSLVDDAKKNIGSGVVAFAC 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S + KA +++ VT+DL  +F+AV+  R+++  LGG GGGGRP +AQ+GGPN    +QA+
Sbjct: 817 ASPDGKAGIVVGVTDDLTSKFSAVEFVRVASATLGGKGGGGRPDLAQAGGPNAAAIEQAL 876

Query: 890 AGVASFLK 897
           A V   L+
Sbjct: 877 ASVEDALR 884


>gi|328954420|ref|YP_004371754.1| alanyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328454744|gb|AEB10573.1| alanyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 878

 Score =  900 bits (2326), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/908 (41%), Positives = 533/908 (58%), Gaps = 43/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL +F+   H  + SSSL+P +DPTL+FTN+GMV FK +F G+E+  Y   
Sbjct: 1   MTGKEIREKFLAYFESKRHVRVASSSLVPAHDPTLLFTNAGMVQFKRLFLGEEQRGYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK  AI++AW+LLT+ + L 
Sbjct: 61  ASAQKCVRAGGKHNDLENVGKTARHHTFFEMLGNFSFGDYFKAGAIEMAWELLTEHYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ TVY +D+EA  LW  +  L  ++I+R+   DNFW+M +TGPCGPCSEI  DQGE
Sbjct: 121 TERLWATVYHDDDEAADLWHDVIHLPRERIVRLGEKDNFWAMGDTGPCGPCSEIIIDQGE 180

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G        + +RY+EIWNLVFMQF +  +     LPK SIDTGMGLER+  V+Q 
Sbjct: 181 ERACGPDCGIGRCDCDRYLEIWNLVFMQFNRDEQGNLTPLPKPSIDTGMGLERLTAVIQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N+D DL + +I  +E++ G+ Y  +    V  +VI DH R+ +FLI DG+LP+NEGR
Sbjct: 241 VPTNFDTDLIRPVIARTEELAGIAYGQDPALDVAFKVIADHCRAITFLITDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + RLLG+ +P +  +   +   MG  YPEL+ A+  I++ + +E+ER
Sbjct: 301 GYVLRRILRRAVRFGRLLGFKQPFLAPVGQKVIELMGGDYPELLDARSFIDQVVHNEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD GL +L   L  L       L GD+AFKLYDT+G PLD++ D+L  +    +D+
Sbjct: 361 FAETLDHGLKILTDNLEDLKARGERRLPGDIAFKLYDTYGFPLDLITDVLQEQ-QLELDL 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +  QR  +R    G   G    ++  + +   AT F+GYD              
Sbjct: 420 SGFNEHMSRQRESSRQSWKGGLPGELPPVY-QVLQDLEATVFVGYDQFE----------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AI+Q+G  V  A +G+ VE+V + TPFYAE+GGQ+ DTG   
Sbjct: 468 ------------AESQILAIIQEGATVSGAKAGRSVEIVVETTPFYAESGGQVADTGTIR 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G    + ITDVQ+    + +H   +++G +R    +VL ID   RRQ++ +H+ATHLLH 
Sbjct: 516 GPDFLITITDVQRLPNDVVIHKGEIKQGEIRVGKKVVLAIDAGRRRQIACHHTATHLLHA 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV Q GS + PD  RFD +H   ++ A L  +E ++   I QNLPV    M 
Sbjct: 576 ALRHRLGDHVKQAGSLVAPDRFRFDYSHFTGLSDAVLAQLEVDLLHDIQQNLPVNVSYMP 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A+ +GA AL   KY + VR+V+V        S  LCGG HV  TG+I    I+SESS
Sbjct: 636 MSEALETGAMALFDEKYGNIVRLVAVPG-----VSLELCGGAHVDQTGDIGFCKIISESS 690

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G  A  +L  + ++L ++   LK  +G ++ R++++ +  R+L+    
Sbjct: 691 VAAGIRRIEAVCGAAALRYLQEESQELSAVGQRLKAGKGEILARLDKLLQRQRELEKEVE 750

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + QL              +  V  ++  +   D K L+   D L+ ++QSG+I+L   
Sbjct: 751 ALQGQLAAARSGDLLERVRHVDGVKVLALEVDVADPKGLRDFADKLKDRLQSGVIILGSG 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + KA ++ VVT+DL DR +A  +    A  L GG GGGRP MAQ+GGP   K  + ++
Sbjct: 811 RGD-KAMLITVVTKDLTDRLHAGKIVGELAARL-GGKGGGRPDMAQAGGPAKEKLPEVLS 868

Query: 891 GVASFLKK 898
                + K
Sbjct: 869 EAYGVVAK 876


>gi|117919577|ref|YP_868769.1| alanyl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|205830207|sp|A0KU94|SYA_SHESA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117611909|gb|ABK47363.1| alanyl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 874

 Score =  900 bits (2326), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/909 (41%), Positives = 551/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+     +  + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTD--LSNKSLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L   ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDSALNELQ-GDTLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYSELTG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ V A+   GE V    +G    VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------NAKVTALYLNGESVSAISAGDDAVVVLDVTPFYAESGGQVGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  GI   ++D QK  +        +  G L     L   +D + R +  +NHS THLLH
Sbjct: 511 VAQGIEFAVSDTQKFGQASGHK-GTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKAQLDKMKQLEKDM 744

Query: 775 AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + K +L     +        +  VN +   +  V++  L+ + D L++K++S +I+L G
Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAVILL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           + V  ++ +
Sbjct: 863 SQVLPWITE 871


>gi|258623803|ref|ZP_05718760.1| alanyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|258583926|gb|EEW08718.1| alanyl-tRNA synthetase [Vibrio mimicus VM603]
          Length = 858

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/911 (42%), Positives = 539/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 61  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 121 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 180

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 181 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 240

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 241 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 298

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   L         L+  L   MG+A  EL + + L+E+ LR
Sbjct: 299 SNEGRGYVLRRIIRRAVRHGNKLSAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G   D+  D+   RG + 
Sbjct: 359 IEEENFGRTLDRGMSILNEALDQLS-GQVLDGETVFKLYDTYGFLADLTNDVARERGFS- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + +L +    T+F GY   RG       
Sbjct: 417 IDETGFEQAMEEQRQRAREA------GQFGTDYNALIKSATNTEFCGYTASRG------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ I  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 464 ----------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D  K       HH ++ +G+L     +   +D Q R  +S+NHSATHL
Sbjct: 508 VLKTEAGVFHVEDTHKLGN-AIAHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+ E+K +E  VN  I +N  + T 
Sbjct: 567 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTATEIKEVERLVNQEIRRNHSIETN 626

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 627 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  ++  Q                    +V E+  + + L+ 
Sbjct: 682 EGGIAAGIRRIEAVTGEGALDYIEAQQA--------------QHDAKVVEMAAKAKLLEK 727

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 728 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIML 787

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             I+ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 788 GNIA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 845

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 846 ALESVDAWIAE 856


>gi|330966776|gb|EGH67036.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 874

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/893 (43%), Positives = 528/893 (59%), Gaps = 55/893 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P++EGRGYVLRRI+RRA  +   LG        ++ AL TEMGSA+PEL+Q +  IE  L
Sbjct: 299 PSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVTEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +++  L+ L    ++ G++ FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKIIEQDLAELK-GTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R  ++D  K     F+HH +V  G L   + +   +  + R    +NHSATH
Sbjct: 508 GFLLAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVVT
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           L  +  E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGG 853


>gi|205830055|sp|Q0VNK2|SYA_ALCBS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 863

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/903 (42%), Positives = 534/903 (59%), Gaps = 46/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL++F   GH  + SSSL+P NDPTL+FTN+GM  FK++F G+E   Y   
Sbjct: 1   MKSAELRQAFLDYFASQGHTKVSSSSLVPANDPTLLFTNAGMNQFKDVFLGRESRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT    L 
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++TV+  D+EA  +W K  G+SA++  R+   DNFW M +TGPCGP SEIF+D G 
Sbjct: 121 EERLWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGA 179

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS++E  +RYIEIWNLVFMQ+++Q   E   LPK S+DTGMGLER+A VLQ  
Sbjct: 180 DVPGGPPGSADEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ L+QA+ + TG         + RVI DH+RS+SFLI DG++P+NEGRGYV
Sbjct: 240 HSNYEIDLFQALLQAAAKATGCTD--LEEKSLRVIADHIRSASFLICDGVIPSNEGRGYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +P    L+ AL  EMG AYPEL + +  IE+ L +E+E+FG+
Sbjct: 298 LRRIIRRALRHGHKLGQDKPFFSTLVAALVAEMGEAYPELGREQARIEKALLAEEEQFGR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL  G+ +L+  +  L    +L GDV F LYDTHG P D+  D+   R L+ +D+  F  
Sbjct: 358 TLAAGMKVLESAIEQLD-GRVLPGDVLFNLYDTHGFPPDLTADVARERDLS-VDMDGFEA 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+  QR RAR      G+G+    +         T F GY+ L                 
Sbjct: 416 AMAAQRERAR------GAGSFANDYSDRLNIDAITDFSGYEKLADDN------------- 456

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      V A+ + G  V+   +G++  VV D+TPFYAE+GGQ+GDTG  I D  R
Sbjct: 457 ----------TVVALYKDGAAVDTLNAGEEGMVVLDRTPFYAESGGQVGDTGALIADEAR 506

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +TD +K+     VH      G L     +   +D   R  +  NHSATHL+H AL  +
Sbjct: 507 FMVTDTRKRQA-AHVHVGKQVSGSLTIGGKVSACVDVDRRLAVMRNHSATHLMHAALRNV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS ++ D LRFD +H + ++ A+ + IE  VN  I  N  V T +M+ E A 
Sbjct: 566 LGEHVQQKGSLVSADYLRFDFSHGEAVSEAQREEIEILVNRQILANTAVTTELMDIESAR 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY+D+VRV+S+        S  LCGGTHV+ TG+I L  I  E+S  AG+
Sbjct: 626 EAGAMALFGEKYDDQVRVLSMGS---DGFSKELCGGTHVNRTGDIGLFRITLEASAAAGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A + +  Q+  L  +A+ +K S  N   RV    ++ R+L+    + K +
Sbjct: 683 RRIEAVTGEHALAVMRRQERALSEIAATVKSSLDNAADRVRSQAQKVRELEKEIERLKQK 742

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L              I  V  ++  I   D K L+  MD L+ K+ S +I+L  +  E K
Sbjct: 743 LASGAGGDLTSEVQDINGVKVLATQIDGADGKTLRVTMDKLKDKLGSAVIVLAAVEGE-K 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            +++  VT+DL  ++ A DL +  A+ +  G GGGRP MAQ GG N      A+  V ++
Sbjct: 802 VALVAGVTKDLTTKYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALESVKAW 860

Query: 896 LKK 898
           + +
Sbjct: 861 VAE 863


>gi|261820431|ref|YP_003258537.1| alanyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261604444|gb|ACX86930.1| alanyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 875

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/910 (42%), Positives = 538/910 (59%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYNIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD GE I GG P    E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLFK LI A  +  G         + RVI DH+RS +FLIADG++
Sbjct: 243 RVSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTD--LTNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIDVMGPAAAELKKQQSVVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F +TL+RGL LLD  + +L   + L+G+  F+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KMEEEQFARTLERGLSLLDEEIKNLK-GDTLDGETVFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+  QR RAR              + SL      T F GY+  +       
Sbjct: 420 -VDEEGFESAMTAQRQRAREA------SGFGVDYNSLIRVDENTPFCGYEKTQQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V++  +G    V+ ++TPFY E+GGQ+GD 
Sbjct: 467 -----------------QAKVIALYHNGNAVDQIAAGDDAVVILNETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   + D QK  +    H   + +G LR   S+   +D Q R ++ +NHSATH
Sbjct: 510 GELKNAGVSFAVQDTQKYGQ-AIGHVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T
Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRLVEDIVNAQIRRNLTVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA A GA AL G KY+D VRV+++     G  S  LCGGTH + TG+I L  I+
Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHANRTGDIGLFQII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALE 743

Query: 772 LI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                    +   + +       ++  V  +   +  VD K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G + E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 L-GTATEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDALALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 GALASVESWV 871


>gi|146307925|ref|YP_001188390.1| alanyl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|145576126|gb|ABP85658.1| alanyl-tRNA synthetase [Pseudomonas mendocina ymp]
          Length = 892

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/912 (43%), Positives = 550/912 (60%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 19  MKSAEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 78

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +
Sbjct: 79  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLN 138

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+++W K  G+ A+++IRI  N       DNFW+M +TGPCGPC
Sbjct: 139 LPKEKLWVTVYATDDEAYEIWNKEIGVPAERMIRIGDNKGAPYASDNFWAMGDTGPCGPC 198

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD GE I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 199 TEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 258

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L+ AS +  G         + +V+ DH+RS SFLIADG+ 
Sbjct: 259 RISAVLQHVNSNYEIDLFQNLLAASAKAIGCA--NEGQASLKVVADHIRSCSFLIADGVT 316

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L
Sbjct: 317 PSNEGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERVL 376

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ GD+ FKLYDT+G P+D+  DI   R L+
Sbjct: 377 KTEEEQFAKTLEQGLKILEQDLAGLQ-GSVIPGDIVFKLYDTYGFPVDLTADIARERELS 435

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RAR+ S           + +L +    T+F+GY+   G      
Sbjct: 436 -VDEEGFEREMEAQRERARSASAFGM------DYNALVKVDADTRFLGYEGTSG------ 482

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S  + A+ + G  V+    G++  VV DQTPFYAE+GGQ+GD 
Sbjct: 483 -----------------SGKIIALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGDC 525

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+R  + D  K     F+HH +V +G L    S+    +   R+  ++NHSATH
Sbjct: 526 GYLESAGMRFDVRDTTKAGG-AFLHHGVVAKGGLSVGTSVKAEAEASVRQATALNHSATH 584

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +LK +ED VN  I +N  V T
Sbjct: 585 LLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKQLEDIVNAEIRKNSEVET 644

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I 
Sbjct: 645 EETDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 700

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +E+LK  AS +K S+ NV+ ++  + E  R+L+
Sbjct: 701 SEGGVAAGVRRIEAVTGAAALAWLNAAEEQLKEAASLVKGSRDNVLDKLSALIERNRQLE 760

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +           S   +     ++  +  +D K L +++D L+ K+ SG+I+
Sbjct: 761 KELEQLKAKAASAAGNDLAGSAVDLKGTKVLAARLDGLDGKALLALVDQLKNKLGSGVIL 820

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G+  ++K  ++  VT+DL  +  A DL R +A  +GG G GGRP MAQ GG +  K D
Sbjct: 821 LGGVF-DEKVVLVAGVTQDLTAKLKAGDLMRQAAAAVGGKG-GGRPDMAQGGGVDAGKLD 878

Query: 887 QAIAGVASFLKK 898
           +A+A  A+F+++
Sbjct: 879 EALALAATFVEQ 890


>gi|326561060|gb|EGE11425.1| alanyl-tRNA synthetase [Moraxella catarrhalis 7169]
          Length = 893

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/922 (40%), Positives = 522/922 (56%), Gaps = 56/922 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y
Sbjct: 1   MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
               + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K
Sbjct: 61  VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169
              L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPC
Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180

Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EIF+D GE I GGLP    E+G+RYIEIWN VFMQF +Q       LPK S+DTGM
Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GLER++ ++Q    NY+ D+F  L+  +  +       +  N  + +V+ DH+RS +FLI
Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  
Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE+ +  E+E+F KTL +GL LL   L  L + ++L G+  FKLYDT+G P D+  DI+ 
Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVR 420

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  ID   F  ++ EQR+RAR              + +L +   AT+F+GY+ L   
Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  + Q G+ V+    G +  ++ D+TPFYAE+GG
Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+G+ G    +     + D QK  + I   H +V+ G +    S    +  Q R   + N
Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N
Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704
            P    I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+
Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ 
Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R L+    +   +L     +        I     +   ++ +D+K L+++ D ++ K
Sbjct: 750 DKNRHLEKQIERLNQKLASLHANSLTDNLKDIHGQKVLIATVNGMDNKALRTLSDDMKSK 809

Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ
Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTSKIKAGDIIKYLSENL-GGKGGGKPDFAQ 868

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            G  +     + + G+  ++ +
Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890


>gi|220925350|ref|YP_002500652.1| alanyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
 gi|219949957|gb|ACL60349.1| alanyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
          Length = 886

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/892 (51%), Positives = 608/892 (68%), Gaps = 35/892 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK +YQ 
Sbjct: 1   MSGVNEIRSTFLDYFAKHGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRLYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW+L+TKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWNLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY EDE+A  LW+KI+G S D+IIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 DKDRLLVTVYAEDEDAATLWRKIAGFSDDRIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG P    E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 PELWGGPPGSPDEDGDRFLEFWNLVFMQYEQIEPGNRVDLPRPSIDTGMGLERIAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A     G   EG    ++RVI DHLR+SSFL+ADG+LP NEGRGY
Sbjct: 241 VKSNYDTDLFRSLIDAVAHQVGRAPEGPQTASYRVIADHLRASSFLVADGVLPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +P+M  L+P L  EMG AYPEL +A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGARDPMMYRLVPTLVREMGQAYPELERAEALITETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L +RG  G+D  SF 
Sbjct: 361 RTLERGLSILDAETRDLSAGQKLSGETAFTLYDTYGFPLDLTQDALKSRG-IGVDTESFK 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ ARA   G G   TE +WFSL+E+ GAT+F+GY+                  
Sbjct: 420 AAMERQRAAARAAWAGSGEAATETLWFSLRERVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G  VE   +G++  +V  QTPFY E+GGQ+GDTG     G+
Sbjct: 462 -----AETAEGVVTALVKGGAEVEAIGAGEEGLLVVSQTPFYGESGGQVGDTGTVTAPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+++TD +KK   +FVHH +VE G L T  ++ L +D++ R  +  +HSATHLLH AL  
Sbjct: 517 RVRVTDTEKKLGDLFVHHVMVEEGRLATGQAIELQVDHERRAAIRAHHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD +H KP+   E+ ++ED  N ++ QN PVVT++M  +DA
Sbjct: 577 VLGDHVAQKGSLVSPERLRFDFSHPKPMNDDEVAAVEDMANRVLLQNGPVVTKLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA+GA AL G KY D VRVVS+  E          S  LCGGTHV+ TGEI ++ +V ES
Sbjct: 637 IATGARALFGEKYGDEVRVVSMGEESSADGRPKAFSVELCGGTHVARTGEIGVITVVGES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ +G+RRIEA+TG  AR HL  +  +L ++A  LKV       R+  + E+ R+L+   
Sbjct: 697 AVASGVRRIEAMTGDAARRHLAEESRRLAAMAGLLKVPPAEAPERLAALIEDRRRLEREL 756

Query: 775 AKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ + +L +   S       ++  V  M+  +  V+ ++LKS+ D  +K++ SGI+ +VG
Sbjct: 757 AEARRKLAMGGGSAGEDPVREVGGVKLMARAVQGVEMRDLKSLADEGKKRLGSGIVAIVG 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           ++++ KA +++ VT+DL DRF+AV L R  ++ LGG GGGGR  MAQ+GGP+
Sbjct: 817 VAQDGKAGLVVGVTDDLTDRFDAVALVRAGSERLGGKGGGGRRDMAQAGGPD 868


>gi|296133407|ref|YP_003640654.1| alanyl-tRNA synthetase [Thermincola sp. JR]
 gi|296031985|gb|ADG82753.1| alanyl-tRNA synthetase [Thermincola potens JR]
          Length = 884

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/910 (41%), Positives = 555/910 (60%), Gaps = 44/910 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK +F G ++  Y+  
Sbjct: 1   MTGNEIREKFLKFFENKGHTIIASSSLVPHDDPTLLFTNAGMNQFKEVFLGLDRRPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK  AI  AW  LT+E  L 
Sbjct: 61  TTSQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKREAITYAWQFLTEELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +DEEA +LW++I+GL  +++IR+   DNFWSM +TGPCGPCSE+  D+GE
Sbjct: 121 KDRLYATVYRDDEEAAQLWQEIAGLPPERVIRLGEKDNFWSMGDTGPCGPCSEVLIDRGE 180

Query: 182 CIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                       + + +R++EIWNLVFMQ+ +    E   LPK SIDTGMGLER+A+V+Q
Sbjct: 181 EFKCAADNCAIGACDCDRWLEIWNLVFMQYNRDESGEMTPLPKPSIDTGMGLERIASVMQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGR 297
           +  +N+D DLFK ++   E+++G  Y  +      RVI DH R+ +FLI+DG+LP+NEGR
Sbjct: 241 KVNSNFDTDLFKPIMAKVEELSGSVYYQDERGFPFRVIADHARACTFLISDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + ++LG  +P +  ++  +   MG AYPE+ + +  +E+ ++ E+ER
Sbjct: 301 GYVLRRILRRAVRFGKVLGIEKPFLYQMVGVVADLMGDAYPEIREKQTYVEQVIKIEEER 360

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL  G+ L+  ++        + ++G  AF LYDT+G PLD+ +DI    GL  +D 
Sbjct: 361 FHETLHEGMRLVSDIVEKVKAEGRQSISGQEAFLLYDTYGFPLDLTEDIAEEHGLT-VDK 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A+EEQR+RARA          ++++  + +K GAT+F GY  L            
Sbjct: 420 DGFAAAMEEQRTRARAARQDEAMLAGQELYAEVGQKLGATEFTGYSELETR--------- 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V A++   E   E  +G++VEV+ D+T FY E+GGQ+GD G   
Sbjct: 471 --------------ANVVALIVDKEFRHEVRAGEQVEVIMDRTCFYGESGGQVGDRGILE 516

Query: 536 GDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            +    +++TD +K   G+ VH   VE+ I+     +   +D + R+Q++ NHS THLLH
Sbjct: 517 SNRGAVIKVTDTKKTFNGLMVHLGTVEKDIVSFGDVMDARVDARRRKQIARNHSVTHLLH 576

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS + P+ LRFD TH + +T  EL+ +ED VN++I  NL V     
Sbjct: 577 KALKEVLGDHVNQAGSLVEPERLRFDFTHFRAVTPEELQKVEDRVNEMILANLDVHAFET 636

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A A GA AL G KY ++VRVV +     G +S  LCGGTH+ STGE  L  I+SES
Sbjct: 637 SLDEAKALGATALFGEKYGEKVRVVKM-----GDYSMELCGGTHLRSTGEAGLFKILSES 691

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG+    ++  Q+ +LK +A  +K S   VV RVE I +  R+ +   
Sbjct: 692 GIGAGLRRIEAVTGEGTLRYIAEQEARLKDIARLVKSSPAEVVKRVENIVDNLREKEKEL 751

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + + +L  E+         ++A    ++      D   L+ + D L+ K+ SGI++L  
Sbjct: 752 EQLQARLAREESQNLMDKVKEVAGAKVLAVPTGAPDMDALRHMGDMLRDKLGSGIVVLGA 811

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + + +VT+DL+ +  +A ++ +  A+V GGGG GGRP MAQ+GG +  K + A
Sbjct: 812 TLGD-KVNFVAMVTKDLVAKGAHAGNIIKEVARVAGGGG-GGRPDMAQAGGKDPAKLEAA 869

Query: 889 IAGVASFLKK 898
           +      +++
Sbjct: 870 LQKAYEVIEQ 879


>gi|253990685|ref|YP_003042041.1| alanyl-tRNA synthetase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253782135|emb|CAQ85299.1| Alanyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 876

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/910 (42%), Positives = 543/910 (59%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINYAWELLTGKDWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D EA+ +W+   G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYHTDNEAYDIWQNKVGIPAERIIRIGDNKGVPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG   + NN  + RVI DH+RS +FLI DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVANVTGATDDLNNK-SLRVIADHIRSCAFLIGDGVI 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG T+     L+  L   MG+A   L   + ++E+ L
Sbjct: 302 PSNENRGYVLRRIIRRAIRHGNMLGATDTFFYKLVAPLIEVMGAAGEGLKHQQAIVEQVL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L  L   +IL+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 362 KTEEEQFARTLERGLQLLDDELVKLS-GDILDGETAFRLYDTYGFPVDLTADVCRERNIK 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+E QR RAR       S      +  L +    + F GYD          
Sbjct: 421 -VDEDGFAVAMENQRRRARE------SSGFGADYNELIKVDERSDFSGYDH--------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   + V AI + GE V +  +G++  V+ D+T FYAE+GGQ+GD+
Sbjct: 465 --------------NEQQAKVTAIFRNGESVNQIQAGEEAIVILDKTAFYAESGGQVGDS 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK       H   +E+G L     L   ID + R  + +NHSATH
Sbjct: 511 GILSNADCAFCVIDTQKYG-QAIGHIGKLEKGTLSVNHELNAVIDVKRRDAIRLNHSATH 569

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HVSQ GS +    LRFD +H + +   +++ +ED VN  I +N  V+T
Sbjct: 570 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNAEIRKNSSVIT 629

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A   GA AL G KY ++VRV+S+     G  S+ LCGGTH S TG+I L  I 
Sbjct: 630 ELMDLEAAKVKGAMALFGEKYEEKVRVLSM-----GNFSTELCGGTHASRTGDIGLFRIT 684

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEAITG++A   +  Q + L+ +A  +K    N+  +V  I ++ + L+
Sbjct: 685 AESGTAAGIRRIEAITGKKALESVYQQFDLLQDIAQLVKGDINNLNDKVRGILDKTKVLE 744

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ S       ++  V  +   ++  + K L++++D L+ ++ S II+
Sbjct: 745 KELQQIKDQNAAQESSSLASKAKEVKGVKLLVSQLNNTEPKTLRTMVDDLKNQLGSAIIV 804

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S+++ VT+DL  R  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 805 L-STISDDKVSLIVGVTKDLTARIKAGELISSIAQQI-GGKGGGRPDMAQAGGSDVKSLP 862

Query: 887 QAIAGVASFL 896
            A+  V  ++
Sbjct: 863 SALDSVEDWV 872


>gi|205830256|sp|A4XWE2|SYA_PSEMY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/912 (43%), Positives = 550/912 (60%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+++W K  G+ A+++IRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYEIWNKEIGVPAERMIRIGDNKGAPYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD GE I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L+ AS +  G         + +V+ DH+RS SFLIADG+ 
Sbjct: 241 RISAVLQHVNSNYEIDLFQNLLAASAKAIGCA--NEGQASLKVVADHIRSCSFLIADGVT 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ GD+ FKLYDT+G P+D+  DI   R L+
Sbjct: 359 KTEEEQFAKTLEQGLKILEQDLAGLQ-GSVIPGDIVFKLYDTYGFPVDLTADIARERELS 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RAR+ S           + +L +    T+F+GY+   G      
Sbjct: 418 -VDEEGFEREMEAQRERARSASAFGM------DYNALVKVDADTRFLGYEGTSG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S  + A+ + G  V+    G++  VV DQTPFYAE+GGQ+GD 
Sbjct: 465 -----------------SGKIIALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGDC 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+R  + D  K     F+HH +V +G L    S+    +   R+  ++NHSATH
Sbjct: 508 GYLESAGMRFDVRDTTKAGG-AFLHHGVVAKGGLSVGTSVKAEAEASVRQATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +LK +ED VN  I +N  V T
Sbjct: 567 LLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKQLEDIVNAEIRKNSEVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I 
Sbjct: 627 EETDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +E+LK  AS +K S+ NV+ ++  + E  R+L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEEQLKEAASLVKGSRDNVLDKLSALIERNRQLE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +           S   +     ++  +  +D K L +++D L+ K+ SG+I+
Sbjct: 743 KELEQLKAKAASAAGNDLAGSAVDLKGTKVLAARLDGLDGKALLALVDQLKNKLGSGVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G+  ++K  ++  VT+DL  +  A DL R +A  +GG G GGRP MAQ GG +  K D
Sbjct: 803 LGGVF-DEKVVLVAGVTQDLTAKLKAGDLMRQAAAAVGGKG-GGRPDMAQGGGVDAGKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A  A+F+++
Sbjct: 861 EALALAATFVEQ 872


>gi|262273675|ref|ZP_06051488.1| alanyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262222090|gb|EEY73402.1| alanyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 860

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/911 (41%), Positives = 534/911 (58%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FLEFF+  GH ++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAFLEFFESKGHAIVSSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF LW +  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 KERLMVTVYETDDEAFALWNEKIGIPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQ+ +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQYNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+F+ LI+++ +V G  Y+  +  + RV+ DH+RS +FLI DG++P
Sbjct: 243 IAAIMQGVHSNYEIDVFQTLIKSAAEVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T      L+  L   MGSA  EL + + ++E+ L+
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGATGAFFYKLVGPLAEVMGSAGEELKKQQAVVEKVLK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMAILNDALEALD-GKVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+E QR RAR        G     + ++ +  G + F GY    G       
Sbjct: 419 IDEEGFEAAMEAQRQRAREA------GQFGTDYNAVIKVDGESAFTGYGATEG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                             ++  I   G   E   +  +  ++ DQTPFYAE+GGQ GDTG
Sbjct: 466 ----------------EGLITNIFVDGMASEALATADEAVIILDQTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + +  + ++ D QK       H   +  G L    ++   +D + R+ +++NHSATHL
Sbjct: 510 FLVTEAGKFEVIDTQKYGA-AIGHRGKLVDGTLSVGDTVDAKVDAERRQAIALNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +  +GLRFD +H + +   EL+++E  VN+ I +N  V T 
Sbjct: 569 LHEALRVVLGEHVQQKGSLVRAEGLRFDFSHLEAVKPEELRAVEKLVNEHIRRNHEVSTE 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN E A A GA AL G KY+D VRV+++     G  S  LCGGTH + TG+I +L IVS
Sbjct: 629 IMNIEAAKAKGAMALFGEKYDDNVRVLTM-----GDFSIELCGGTHANRTGDIGMLKIVS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AG+RRIEA+TGQ A      Q +                  +V E     R L+ 
Sbjct: 684 EGGIAAGVRRIEAVTGQGAEEAFYSQQQ--------------EFAKKVSESQNRARLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L  ++ +       +I  +  +   +   DSK L++++D L+ ++ SG++ L
Sbjct: 730 EIQLLKEKLAAQESANLINNVEEINGIKVLISKLDGADSKALRTMVDDLKNQMGSGVVFL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      
Sbjct: 790 ANVA-DDKVGLIAGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDVAALPA 847

Query: 888 AIAGVASFLKK 898
           A+A V+ +L +
Sbjct: 848 ALASVSPWLAE 858


>gi|254487494|ref|ZP_05100699.1| alanyl-tRNA synthetase [Roseobacter sp. GAI101]
 gi|214044363|gb|EEB85001.1| alanyl-tRNA synthetase [Roseobacter sp. GAI101]
          Length = 885

 Score =  898 bits (2321), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/895 (48%), Positives = 570/895 (63%), Gaps = 39/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+++GH + PSS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 1   MKTLNDIRSTFLGYFERHGHSVQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  +W+L+TKEF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RLY+TVY  D+EA  +WKK++GL  ++IIRI T+DNFW M  TGPCGPCSEIF+D G
Sbjct: 121 DPKRLYVTVYHTDDEAADIWKKVAGLPDERIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFPDGTRKPLPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL ++LI AS   +    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLMRNLILASANASNTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL QA+ LI ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGIQDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD  L  L +   L+G+ AFKLYDT+G P+D+ QD L  +  + +D+  F+
Sbjct: 361 KTLDRGLKLLDDELKGLPEGANLSGEAAFKLYDTYGFPVDLTQDALREQDRS-VDLEGFS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++ ARA   G G      +WF + E  G T F+GYD                  
Sbjct: 420 AAMEKQKALARAAWSGSGEAADATVWFDVAENAGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A++Q G  V+ A +G KV++  +QTPFYAE+GGQ+GDTG    +  
Sbjct: 462 -----TETAEGQIVALIQDGAQVDAAKTGDKVQIALNQTPFYAESGGQVGDTGLIKTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +TD +K A  +F+H   V  G + T  + VL +D+  R  +  NHSATHLLH AL  
Sbjct: 517 SVTVTDTRKTAG-VFIHFGDVTEGTITTGQAAVLDVDHARRTSIRANHSATHLLHEALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+ P+++ EL  +E  VN  I QN PV TRIM  +DA
Sbjct: 576 ALGDHVAQRGSLNAADRLRFDYSHNSPMSAEELAQVEQEVNTYIRQNAPVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+          D   +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 RGLGAQALFGEKYGDEVRVVSMGRQPGSGKGADKSTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +SS  +G+RRIEA+TG  A S L  Q+  L  +A+ LK S  +V  RV  + +E R L  
Sbjct: 696 DSSSSSGVRRIEALTGTEALSWLRAQETALSRVAAELKTSTADVPDRVRALLDERRALAN 755

Query: 773 IHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A+ + +L              +  + FM+ ++S V  K+L +++D  + K+ SG+++L
Sbjct: 756 EVAQLRRELAMSGGGAAAPEARDVNGMKFMAQVLSGVTGKDLPALVDEYKAKLGSGVVLL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +    + KA+V   VT DL  + +AVD+A+ +   LGG GGGGRP MAQ G  + 
Sbjct: 816 IA-DADGKAAVAAGVTADLTSQVSAVDIAKAAVAELGGKGGGGRPDMAQGGAKDV 869


>gi|114046704|ref|YP_737254.1| alanyl-tRNA synthetase [Shewanella sp. MR-7]
 gi|123030800|sp|Q0HXF8|SYA_SHESR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|113888146|gb|ABI42197.1| alanyl-tRNA synthetase [Shewanella sp. MR-7]
          Length = 874

 Score =  898 bits (2321), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/909 (41%), Positives = 551/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+     +  + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTD--LSNKSLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L   ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDSALNELQ-GDTLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYSELTG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ V A+   GE V    +G    VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------NAKVTALYLNGESVPAINAGDDAVVVLDVTPFYAESGGQVGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  GI   ++D QK  +        +  G L     L   +D + R +  +NHS THLLH
Sbjct: 511 VAQGIEFAVSDTQKFGQASGHK-GTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKVQLDKMKQLEKDM 744

Query: 775 AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + K +L     +        +  VN +   +  V++  L+ + D L++K++S +I+L G
Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAVILL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           + V  ++ +
Sbjct: 863 SQVLPWITE 871


>gi|254480113|ref|ZP_05093361.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214039675|gb|EEB80334.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 866

 Score =  898 bits (2321), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/903 (42%), Positives = 552/903 (61%), Gaps = 47/903 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  V  IR  FL++F+++ H+ + SSSL+P +DPTL+FTN+GMV FK+ F G +   Y  
Sbjct: 1   MKTV-EIREAFLDYFEQHEHQRVASSSLVPGDDPTLLFTNAGMVQFKDTFLGNDPRSYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT    L
Sbjct: 60  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWNFLTGTLGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++T +  D+EA +LW    G   ++I R+   DNFW M +TGPCGPC+EIF+D G
Sbjct: 120 PPERLWVTCHVSDDEAEELWVNEIGFPRERITRL-DEDNFWQMGDTGPCGPCTEIFYDHG 178

Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS EE  +RYIEIWNLVFMQF + +  +   LP  S+DTGMGLER+A V+Q+
Sbjct: 179 PDVPGGPPGSPEEDMDRYIEIWNLVFMQFNRDSSGKMHPLPAPSVDTGMGLERIAAVMQQ 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+++  +  +    +N  + RVI DH+RS +FLIADG+LP NEGRGY
Sbjct: 239 VHSNYEIDLFQALIKSAASILDVDDLEHN--SLRVIADHIRSCAFLIADGVLPGNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG T+P    L   L  EMG AYPEL++ +  IE+ L +E+E+F 
Sbjct: 297 VLRRIIRRAVRHGNKLGATQPFFFQLTATLAKEMGGAYPELVKLQPQIEKALLTEEEQFA 356

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD G+ +L+  L+ L  DEI  GDV FKLYDT G P+D+  DI   R L  +DI  ++
Sbjct: 357 KTLDNGMQILEEALAGLQGDEI-PGDVVFKLYDTFGFPVDLTNDIARERELR-LDIAGYD 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +QR+R++        G+ +  +    +  G+T+F GYD LRG              
Sbjct: 415 AAMAQQRTRSQEG------GSFKLDYNDALKLEGSTEFTGYDSLRG-------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+++ GE V+   + +   VV   TPFY E+GGQ+GDTG    +G+
Sbjct: 455 ---------EGTVTALLKDGEEVDFLGTDESGIVVLSSTPFYGESGGQVGDTGYITAEGL 505

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L++T+   KA    +HH     G +R    +   +D   R++  +NHSATHLLH AL +
Sbjct: 506 KLEVTNT-TKASDQHLHHVNTLTGTIRQGDIVHSVVDDSLRQRTRLNHSATHLLHSALRS 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +  + LRFD +H + +T  ELK IE  VND +  N  V TR+M+ ++A
Sbjct: 565 VLGDHVQQKGSLVDSERLRFDFSHFEGVTGEELKRIESIVNDQVRANTEVSTRVMSMDEA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L+ I SES + AG
Sbjct: 625 IEAGATALFGEKYGDEVRVLSMGE---AGFSVELCGGTHVARTGDIGLMRITSESGVAAG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIE +TG  A   +   +  L ++   +K +  NV  +V  + +E R+L+   A+ K 
Sbjct: 682 VRRIEGVTGAGALGQIDVTERYLAAVCDVVKGNSVNVADKVAGLRQENRELEKEVARLKQ 741

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L          +  ++A +  ++  +   D+K L+ V+D ++ K+ SG+I+L  ++ + 
Sbjct: 742 KLATGAGTDLTAAAVEVAGIKVLAVNVEGADAKSLRDVLDQVKNKLGSGVILLSAVT-DD 800

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K ++   VT+DL D+  A DL R  A  L GG GGGRP MAQ GG +     + +  V  
Sbjct: 801 KVALTAGVTKDLTDKIKAGDLMREFATRL-GGKGGGRPDMAQGGGSDVAALTEVLKSVPD 859

Query: 895 FLK 897
           +++
Sbjct: 860 WVQ 862


>gi|322421559|ref|YP_004200782.1| alanyl-tRNA synthetase [Geobacter sp. M18]
 gi|320127946|gb|ADW15506.1| alanyl-tRNA synthetase [Geobacter sp. M18]
          Length = 875

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 538/906 (59%), Gaps = 43/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F  FFQK GH L+ SS+LIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTGKEIRAQFFNFFQKKGHTLVESSNLIPKNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E  L 
Sbjct: 61  VSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTVELGLS 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY+TVY +D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 SDRLYVTVYTDDDEAADIWHQQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWN VFMQF +        LPK S+DTGMGLER++ V+Q 
Sbjct: 181 GTGCGSPACAVGCDCDRYMEIWNNVFMQFNRSKDGTLTPLPKPSVDTGMGLERISAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DL + +I+  EQV+G KY  +  + V+ RVI DH R+ +FLI DG+LP+NEGR
Sbjct: 241 VTSNYDTDLLQGIIRHIEQVSGKKYRDDEKDDVSMRVIADHARAVTFLICDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG  EP++  ++ A+   MG AYPEL++ +  +++ + +E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGIAEPVLYRVVDAVNVMMGEAYPELLEREHYVKKVILAEEER 360

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+   +        +++G+V FKLYDT G P+D+  DI+ A G   +D 
Sbjct: 361 FIETLDRGLAILNEETAAMKAKGASVISGEVIFKLYDTFGFPVDLTADIVEAEGFT-LDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR +AR +  G G      I+  L+    A++F+GY               
Sbjct: 420 DGFALCMEKQRVKARENWKGSGEQGLADIYKELRGTGIASEFVGY--------------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AI++ G +VEE  +G ++E+V  +TPFY E+GGQ GDTG   
Sbjct: 465 --------AEQTAYSTISAIIKGGVLVEEGNAGDEIEIVTAKTPFYGESGGQAGDTGTIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +++T   +    + VH   V  G +R   ++ L +   +R   + NH+ATHLL  
Sbjct: 517 TGSAHVEVTASTRPFPDLIVHRGKVVSGNIRNGEAVDLKVATAHRAATARNHTATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +TPD LRFD TH  P+T+ E++ +E  VN  I  N PV  R M 
Sbjct: 577 ALREVLGEHVKQAGSLVTPDRLRFDFTHFSPMTAEEMRRVEVLVNGHIMGNSPVDAREMP 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A+A GA AL G KY D VRVV V     G  SS LCGGTHV   GEI    I+SE+ 
Sbjct: 637 ATEALAGGATALFGEKYGDIVRVVRV-----GDVSSELCGGTHVHGAGEIGFFKILSEAG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA TG  A + +   +++ + +A+ LK   G+ + RVE++    R+LQ    
Sbjct: 692 IAAGVRRIEAQTGNGALAVVHQMEDEQRGIATLLKAEGGSTLDRVEKLLASQRELQKELE 751

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN    +       +   +  ++  +   D+K L+ + D L+ +I SGII+L   
Sbjct: 752 ALQAKLNANKSADLIQQVREQNGIKILAVKVEG-DAKGLRELSDTLKARIGSGIIVLGAA 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               KA++L+ VT DL  R+ A D+ +  A ++ GG GGG+P +AQ+GG       +A+ 
Sbjct: 811 DA-AKANLLVAVTSDLASRWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPENLAEALE 868

Query: 891 GVASFL 896
            V   +
Sbjct: 869 AVFQIV 874


>gi|39995259|ref|NP_951210.1| alanyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|48428506|sp|P61701|SYA_GEOSL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|39982021|gb|AAR33483.1| alanyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|298504264|gb|ADI82987.1| alanyl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 875

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/906 (41%), Positives = 538/906 (59%), Gaps = 43/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF   GH ++PSS LIP NDPTL+F N+GM  FK+ F G EK  Y   
Sbjct: 1   MTGKEIRARFLKFFADRGHAVVPSSPLIPHNDPTLLFANAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK+  LD
Sbjct: 61  CSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA  +W    G+  ++I R    DNFW+M +TGPCGPCSEIF+D G 
Sbjct: 121 KDRLYVTVYTDDDEAADIWHLQEGVPRERIYRFGEKDNFWAMGDTGPCGPCSEIFWDNGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P      + +RY+EIWN VFMQF +        LPK S+DTGMGLER++TV+Q 
Sbjct: 181 EVGCGSPDCAVGCDCDRYMEIWNNVFMQFNRSADGVLTPLPKPSVDTGMGLERISTVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NYD DLF+ +I   E+++G +Y     + V+ RV+ DH+R+++FLI DG+LP+NEGR
Sbjct: 241 VKSNYDTDLFQGIIGHVEKLSGKRYRHSEKDDVSMRVMADHVRATTFLICDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG+ EP++  ++ A+   MG AYPEL++ +  I + +R+E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGFAEPVICRMVEAVNAMMGDAYPELLEREEYIRKVIRAEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+  ++ L      ++ G+  F+LYDT G P D+  DI+ + G   ID 
Sbjct: 361 FAETLDRGLAILNEAVADLKNEGRTVIPGETLFRLYDTFGFPTDLTADIVRSEGFT-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E QR +AR H  G G     ++  +L  +   ++F GY+              
Sbjct: 420 DGFEACMERQREQAREHWKGSGEEGIAEVHKTLHSRGVRSRFTGYE-------------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  +++ G  V EA +G +VE++ D TPFY E+GGQ+GDTG   
Sbjct: 466 ---------ARTAYSPVTVLLKGGAEVAEATAGDRVEIITDATPFYGESGGQVGDTGTIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +++T+  +    + VH   V  G +R   +  L +        + NH+ATHLL  
Sbjct: 517 TGSAHVEVTETLRPFPDLIVHRGTVVEGTIRQGDACDLKVAPGRD-ATARNHTATHLLQS 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q+GS + PD LRFD TH   +T  E++ +E+ VN  I  N  V  R M 
Sbjct: 576 ALRQVLGDHVKQSGSLVGPDRLRFDFTHFAAMTPEEIRRVEEIVNSCIMANDDVHAREMA 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A+  GA AL G KY D VRVV V     G  S  LCGGTHV + G+I    I+SE+ 
Sbjct: 636 LDEAMEIGATALFGEKYGDTVRVVRV-----GEVSMELCGGTHVHAAGDIGFFKILSEAG 690

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG  A  H+   +++ K +A+ +K   G+ V R++ +    + +Q    
Sbjct: 691 IAAGVRRIEALTGMGALRHVQQLEDERKEIAALIKAEGGDNVERLQRLLTRQKDMQREIE 750

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN            ++  V  ++ +    D K+L+ + D L+ ++ SG++ L G 
Sbjct: 751 TLESRLNAARSADLLADVREVNGVKVLATLAEVDDPKKLRELADTLKDRLGSGVVAL-GC 809

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            KE KA++L+ VT+DL  R  A DL R  + ++GG G GG+P +AQ+GG   +K  +A+ 
Sbjct: 810 VKEGKANLLVAVTKDLTGRVKAGDLIRQLSPIIGGSG-GGKPELAQAGGTLPDKLGEALG 868

Query: 891 GVASFL 896
            V   +
Sbjct: 869 KVCELV 874


>gi|83951874|ref|ZP_00960606.1| alanyl-tRNA synthetase [Roseovarius nubinhibens ISM]
 gi|83836880|gb|EAP76177.1| alanyl-tRNA synthetase [Roseovarius nubinhibens ISM]
          Length = 888

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/912 (48%), Positives = 585/912 (64%), Gaps = 41/912 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL F+++N H+++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MPTLNEIRSTFLNFYERNDHQIVESSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AWDLLTK+F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY  D+EA ++WKK +GLS D+IIRI T+DNFWSM  TGPCGPC+EIF+D G
Sbjct: 121 NKDKLLVTVYHTDDEAAEIWKKYAGLSDDRIIRIATDDNFWSMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 181 PEIWGGPPGSPEEDGDRFIEIWNLVFMQNERFEDGTMRELDMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS  VT    +G   ++HRVI DHLRSS+FLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHVTSQDPDGPGNIHHRVIADHLRSSAFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           V+RRIMRRAM +A LLG  +P+M  L+PAL T+MG A+PEL +A+ LI+ETL+ E+ RF 
Sbjct: 301 VVRRIMRRAMRHAHLLGAKDPVMHQLVPALVTQMGQAFPELGRAQSLIQETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L +   L G  AFKLYDT+G PLD+ QD L  +G   +D+  F+
Sbjct: 361 QTLDRGLRLLDDELGGLPEGAALPGQTAFKLYDTYGFPLDLTQDALREKGRE-VDVSGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ+++ARA   G G      IWF + E +G T F+GYD                  
Sbjct: 420 EAMAEQKAKARAAWSGSGEAADATIWFDIAESHGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V  G  V+ A  G  V+++ +QTPFYAE+GGQ+GDTG       
Sbjct: 462 -----TETAEGQIVALVADGAEVKSAGKGDSVQIILNQTPFYAESGGQVGDTGVIRSAEG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  +K  G+F+H   V  G L    +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 AAKITDT-RKVAGVFIHIGEVTEGKLVAGAAAQLEVDHTRRTAIRANHSATHLLHEALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +HSK +++ EL  +   VN+ I QN  V TRIM  +DA
Sbjct: 576 ALGDHVAQRGSLNAEDRLRFDFSHSKAMSADELDQVAREVNEYIRQNTRVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+          DG  +S  LCGGTHV  TG+I +  I+ 
Sbjct: 636 RDIGAQALFGEKYGDEVRVVSMGSLDGSGKGLDGTTYSIELCGGTHVRQTGDIGMFVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  +G+RRIEA+TG  AR +L  QD ++ SL   ++    ++V RV  + +E + L  
Sbjct: 696 DSASSSGVRRIEALTGDAARGYLAAQDARVASLTGEMRCKPEDLVARVRGLLDERKALTN 755

Query: 773 IHAKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             A+ + +L +   S         +I  V   + ++S V  K+L +++D  + ++ SG +
Sbjct: 756 EVAQLRRELAMAGGSGGAASDDLREINGVKLHAQVLSGVSGKDLPALIDEHKSRLGSGAV 815

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L+      K +V   VT+DL +R +AV++ R +A  LGG GGGGR  MAQ GG + +KA
Sbjct: 816 LLIA-DTGGKVAVAAGVTDDLTERLSAVEMVRAAAPALGGKGGGGRADMAQGGGADASKA 874

Query: 886 DQAIAGVASFLK 897
           D+AIA V + ++
Sbjct: 875 DEAIAAVETLIE 886


>gi|192292738|ref|YP_001993343.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|192286487|gb|ACF02868.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 889

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/899 (50%), Positives = 607/899 (67%), Gaps = 39/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 KKDKLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG P    E+G+R++E WNLVFMQ++Q  K ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI A+    G      +  + RVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VDSVFDTDLFRSLIDATSSALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG +EPLM  L+ AL  EMG AYPEL++A+ +IEET+R E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L  RG   +DI SF 
Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRG-INVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WFSL+EK GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKLGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G  V+   +G+   ++ +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 462 -----TETAEGVVTALVKDGAEVDALKAGESGAIIVNQTPFYAESGGQVGDTGVLTADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +TD  KKA  +FVH   VE+G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFVVTDTMKKAGDLFVHFGTVEQGSIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  VVTR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ I  E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAARDHGSNVFGWSVELCGGTHVKRTGDIGLVSITGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ AG+RRIEA+TG+ AR +        K  AS L+ +  ++  R+  + +E +KL+  
Sbjct: 697 SAVAAGVRRIEALTGRAARHNANAAISTAKLAASELRTTLDDMPARITALMDERKKLERE 756

Query: 774 HAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            ++ + +L +               I  +  M+  +  ++ K+LK ++D  +K++ SG+I
Sbjct: 757 LSEARKKLAMGGSASGDGAASDVRDIGGIKLMARAVEGIEIKDLKGLVDQGKKQLGSGVI 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            LV  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K
Sbjct: 817 ALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 875


>gi|332185154|ref|ZP_08386903.1| alanyl-tRNA synthetase [Sphingomonas sp. S17]
 gi|332014878|gb|EGI56934.1| alanyl-tRNA synthetase [Sphingomonas sp. S17]
          Length = 882

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/904 (48%), Positives = 593/904 (65%), Gaps = 32/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR  FL++F   GH+++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSTNDIRRGFLDYFGSQGHQIVPSAPLVPQNDPTLMFVNAGMVPFKNVFTGLETRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTK + +
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKVWGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LWKKI+GL   KIIRI T DNFW+M E GPCGPCSEIF+D G
Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPDHKIIRIPTKDNFWAMGENGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQFEQ+  +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIYGGPPGSPEEDGDRFVEIWNLVFMQFEQEANEIVGELPKKSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T  K E     +HRVI DHLRS+ FL+ADG+LPANEGRGY
Sbjct: 241 VHDNYDTDTFKALIAASCELTHTKAEDGQKASHRVIADHLRSAGFLVADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L+PAL  EMG+AYPEL++A+ LIE TL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMHRLVPALVAEMGAAYPELVRAQPLIEATLKQEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+GL LLD   + +     L G+ AFKLYDT+G P D+ +D L A+ L+ +D   F+
Sbjct: 361 QTLDKGLKLLDEATAGMAPGATLAGETAFKLYDTYGFPYDLTEDALRAQNLS-VDRAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+  ARA   G G+  ++ +WF + E+ G+T+F+GY                   
Sbjct: 420 AAMAEQKRAARAAWKGSGAKASDDVWFDIAEETGSTEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                ++     V A+V+ G  V+ A +G  V ++ +QTPFY E+GGQ+GD+G    D  
Sbjct: 461 ----ASDTGEGEVLALVKDGARVDSAGAGDTVSIIVNQTPFYGESGGQVGDSGTISSDTG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  +TD  K+   +FVH+A ++ G ++   S+ L ID   R  +  NHSATHLLH AL 
Sbjct: 517 LKAVVTDTSKQLGRVFVHNAEIQEGGIKVGDSVKLAIDTTRRAAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS + P+ LRFD +    +T+ ++  +E  VN+ +  N PVVTR+M  ++
Sbjct: 577 QRLGTHVAQKGSLVAPERLRFDFSQPVGMTADDIAEVEAKVNEQVRGNGPVVTRLMTPDE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI  GA AL G KY D VRVVS+  +  G +S  LCGGTHV++ GEI +  IVSE ++ +
Sbjct: 637 AIEMGAMALFGEKYGDEVRVVSMGEDADGTYSLELCGGTHVNALGEIGVFKIVSEGAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RR+EA+TG+ AR++L  +D+ LK+ A+ LK +   V GR+  + EE R+L+   A+ K
Sbjct: 697 GVRRVEALTGEGARAYLSHRDDMLKAAAATLKTTPDEVPGRIAALVEERRRLERELAEAK 756

Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             L +   +        +I DV F+  ++   ++K L+  +D  ++++    + ++    
Sbjct: 757 KALAMGGGAGGAAAGPEQIGDVAFIGQVLDGFEAKGLRGAVDDAKQRLGGSGVAVMVAVN 816

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + +ASV + VT+DL  + NAVDL R +   LGG GGGGRP MAQ GGP+G K  +A+  V
Sbjct: 817 DGRASVAVGVTDDLTAKHNAVDLLRKAVAALGGQGGGGRPDMAQGGGPDGTKGAEALQAV 876

Query: 893 ASFL 896
              L
Sbjct: 877 RDAL 880


>gi|205830243|sp|Q1GHA1|SYA_SILST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 883

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/909 (48%), Positives = 588/909 (64%), Gaps = 39/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++  Y  
Sbjct: 1   MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T EFD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D+EAF++WKK  G+  ++IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 121 PKDKLYTTVYHTDDEAFEIWKK-VGVPEERIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLFK+LI+AS  VT  +  G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 240 THDNYETDLFKYLIEASATVTKSEPYGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG T+P+M  L+PAL ++MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 300 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD     L K ++L G+ AFKLYDT G PLD+ QD L A+G   +D   F+
Sbjct: 360 KTLDRGLKLLDDASGDLEKGDVLPGETAFKLYDTFGFPLDLTQDALRAKG-IEVDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+ ++RA  +GLG  T  K++F + +  G T+F+GY+                  
Sbjct: 419 AAMKAQKEQSRAGGIGLGDATDVKVYFDIVDAEGTTEFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V+ G  V+ A +G+ V+++ +QTPFY E+GGQ+GD+G    +G 
Sbjct: 461 -----TEKAEGQIVALVKDGARVDSAKAGESVQIILNQTPFYGESGGQVGDSGMLTVEGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  KK EG+F+H A V  G +       + +D+  R Q+  NHSATHLLH AL  
Sbjct: 516 AARITDT-KKVEGLFLHIAEVTEGEIAVGSGAAMEVDHVRRSQIRANHSATHLLHEALRN 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ +L  I   VND I QN  V TRIM  +DA
Sbjct: 575 ALGDHVAQKGSLNAADRLRFDFSHNKAVSAEDLSKISAEVNDFIRQNSAVSTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY + VRVVS+         DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 635 RALGAQALFGEKYGEEVRVVSMGRAPTGKGADGETYSIELCGGTHVKQTGDIGTFVILGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A +HL  +  ++  +A+ LK    +V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAAAFAHLEREAGRMAEVAASLKAQPADVMERLKALMDERKALQNE 754

Query: 774 HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K Q+             +I    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 755 IATLKQQIAMGGGAGGGAEAKEIGGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + AD+A
Sbjct: 815 A-EDDGKVAVAAGVTDDLTGEISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGADEA 873

Query: 889 IAGVASFLK 897
           I    + LK
Sbjct: 874 IKAAEALLK 882


>gi|289208781|ref|YP_003460847.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288944412|gb|ADC72111.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 869

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/908 (40%), Positives = 527/908 (58%), Gaps = 52/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +FLEFF+ +GH ++ SS L+P NDPTL+FTN+GMV FK++F G+EK  Y   
Sbjct: 1   MKSADIRRSFLEFFEGHGHTIVSSSPLVPGNDPTLLFTNAGMVQFKDVFLGREKRSYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT+   L 
Sbjct: 61  VSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWQFLTETIGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-----DNFWSMAETGPCGPCSEIF 176
             +L++TVY+ D++A+ +W     + A++I+RI        DNFW M +TGPCGPC+E+F
Sbjct: 121 PEKLWVTVYETDDDAYNVWANEIQVPAERIVRIGDKPDGGSDNFWQMGDTGPCGPCTEVF 180

Query: 177 FDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG P    E+G+RYIEIWNLVFMQ+++        LP+ S+DTGMGLER+A 
Sbjct: 181 YDHGPEVEGGPPGSPDEDGDRYIEIWNLVFMQYDRDADGTLNPLPRPSVDTGMGLERLAA 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF+ LI A+ +VTG K    +  + RVI DH+RS +FLI DG+LP+NE
Sbjct: 241 VLQGVHSNYEIDLFQDLIAAAARVTGAK--EQDSASLRVIADHIRSIAFLITDGVLPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA  +   +G  +  +  ++  L   MG A+PEL +A+  +E+ L  E+
Sbjct: 299 GRGYVLRRIIRRAARHGFKVGAQDAFLYQMVGDLVRVMGEAFPELAEAQARVEQVLEKEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            +F +TLD+G+ +L+  L  L   +++ G+  F LYDT+G P+D+  DI   RGL  +D+
Sbjct: 359 RKFLETLDKGMKILEDDLRDLE-GKVIPGETIFLLYDTYGFPVDLTGDIARERGLE-LDM 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A+          +    +         L +    T F GY+ +            
Sbjct: 417 AGFESAMA------DQRARARAASHFSMDDGGLPQIDLETTFSGYETVDD---------- 460

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V A+ Q GE VE    G +  VV D+TPFY E+GGQ+GD G   
Sbjct: 461 -------------EGRVVALYQNGEPVERLEVGAEGLVVLDRTPFYGESGGQVGDVGTLS 507

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G G+R Q+ D +K+          V  G L    +L   ++   R  +  +HSATHLLH 
Sbjct: 508 GSGVRFQVADTRKQGAAHIHV-GQVRAGTLEVGQTLQAAVEGPRRENIRRHHSATHLLHK 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV Q GS + PD LRFD TH +P+T  +L++IE  VN  I  N    TR+M+
Sbjct: 567 ALRDQLGDHVQQKGSLVDPDRLRFDFTHMEPLTDEQLRAIEAQVNAEILANEATDTRVMD 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A+ SGA AL G KY D+VRV+ +        S  LCGGTHV  TG+I L  I SE  
Sbjct: 627 IESAMESGAVALFGEKYGDQVRVLKIG------TSVELCGGTHVDRTGDIGLFRITSEGG 680

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G+ A   +  Q   L ++A  L+  +G    +V ++ E  R+L+    
Sbjct: 681 VAAGIRRIEAVAGEVALRWVDEQLGYLDAIADRLRAGRGEAADKVAQLQERSRELEKQIE 740

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L  +  S       ++  V  ++  I  V+ K L+ ++D L++K+   +++L   
Sbjct: 741 QLKGKLASQAGSDLASQAQEVGGVQVLAAKIDGVEPKALRDMVDQLKQKLGKAVVVLGTA 800

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + E K S++  VT+    +F A DL    A  +  G GGGRP MA +GG + +K D A+A
Sbjct: 801 TGEGKVSLVAGVTKAETGQFKAGDLVGHVAAQV-DGKGGGRPDMAMAGGQSPDKLDAALA 859

Query: 891 GVASFLKK 898
            VA ++++
Sbjct: 860 SVADWVRE 867


>gi|302877754|ref|YP_003846318.1| alanyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302580543|gb|ADL54554.1| alanyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 873

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/911 (40%), Positives = 531/911 (58%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF   GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKSSEIRQQFLDFFASKGHAIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L 
Sbjct: 61  ASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWELLTEVFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RLY+TVY ED+EA+ +W K  GL A ++IRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KERLYVTVYAEDDEAYDIWTKEMGLEASRVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GGLP    E+G+R+IEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFYDHGEHISGGLPGTPEEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + VLQ    NY+IDLF+ LI A+ + T       +  + +V+ DH+R+ SFLIADG++P 
Sbjct: 241 SAVLQHVHANYEIDLFQALINAAARETNCSDM--DSPSLKVLADHIRACSFLIADGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRG+VLRRI+RRA+ +   LG  E     L+P L  +MG AYPEL  A+  ++  L+ 
Sbjct: 299 NEGRGFVLRRIIRRAIRHGYKLGAREAFFYKLVPDLVAQMGVAYPELTAAQDRVKGVLKL 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF  T++ G+ +L+  L  + +  + + NG+ AFKL+DT G P+D+  D+    G+ 
Sbjct: 359 EEERFFATIENGMAILEADLLAMKQAGNTVFNGETAFKLHDTFGFPVDLTADVCREHGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D+ +F+ A+ +Q+ +ARA      +        +L+ +  AT F GY+ L  +     
Sbjct: 419 -VDVAAFDAAMAQQKQQARAAGKFKMAA-------NLEYEGPATLFHGYETLEHA----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+ + G  V E   G    VV D TPFYAE+GGQ GD+
Sbjct: 466 ------------------GCVLALYKDGVSVGELNEGDTGVVVLDNTPFYAESGGQTGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK    +F HH +++ G L     +   ++   RR    NHS TH
Sbjct: 508 GELRGSHGIFAVEDTQKIQAAVFGHHGVLKTGKLLVGNGVQARVNMAARRATERNHSVTH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  HS+P+T +E+  +E  VN  I  N    +
Sbjct: 568 LMHKALREVLGAHVQQKGSQVDADKTRFDFVHSQPVTDSEVLRVEFIVNAEILSNAASQS 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  EDA  +GA  L G KY D VRV+++        S  LCGGTHV+ TG+I L  IV
Sbjct: 628 RVMGIEDAQQTGAMMLFGEKYGDEVRVLNIGS------SIELCGGTHVARTGDIGLFKIV 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + AG+RRIEA+TG+ A   +  Q  +L+++A  +K       GR+ ++ +  + L+
Sbjct: 682 SESGVAAGVRRIEAVTGEGALDLIQMQQRQLRAVADAVKAQPHEAAGRIAQLLDHQKSLE 741

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L              I  V  ++ ++   D+  L+  +D L+ K++S +I+
Sbjct: 742 KELTALKSKLASAQGDELVAQAQDINGVKVLAALLPGADAAILRETLDKLKDKLKSAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K +++  VT D   +  A +L  ++A+ + GG GGGRP MAQ+GG       
Sbjct: 802 LASVT-DGKVALIAGVTADQTAKVKAGELVNMAAQKV-GGKGGGRPDMAQAGGTQPEHLA 859

Query: 887 QAIAGVASFLK 897
            A+A V  +++
Sbjct: 860 AALASVTDWVR 870


>gi|197336333|ref|YP_002155293.1| alanyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|197317823|gb|ACH67270.1| alanyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 859

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/905 (41%), Positives = 534/905 (59%), Gaps = 58/905 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+  +L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             RL +TVY+ D+EAF++W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 ADRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ + +V G  Y+  +  + RV+ DH+RS S+LI DG++P+
Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKEAAKVIG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ LL+  L +L    +L+G+  FKLYDT+G P D+  D+   R L  I
Sbjct: 361 EEENFGRTLERGMALLNEALDNLE-GTVLDGETVFKLYDTYGFPADLTNDVARERDLT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR        G     + ++ +    T F GYD            
Sbjct: 419 DEDGFEKAMEEQRQRAREA------GQFGTDYNAVIKVESETVFHGYDSTE--------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V A+ ++GE V+   +G +  ++ DQTPFYAE+GGQ GD G 
Sbjct: 464 --------------AKASVIALFREGEEVDALSAGDEAILILDQTPFYAESGGQCGDAGI 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  +  +TD  K       HH  +  G+L      +  +D   R  + +NHSATHLL
Sbjct: 510 ITVETGKFVVTDTHKIGN-AIGHHGKLVEGVLSKADHAMAQVDETRRAAIILNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + + + EL+ +E  VN  I  N  + T +
Sbjct: 569 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 629 MDIDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG+ A   +  Q +                  + +++ +E ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIEAQQKAADK-------KLNEAASKAKQLEKEIQQLKDK 736

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            A ++    +      +IA    +   +   D+K L+ ++D L+ +I SGIIML  +S E
Sbjct: 737 LASQESASLIN--KVQEIAGTKVLVAQLDGADNKALRGMVDELKNQIGSGIIMLGNVS-E 793

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K  ++  VT+DL+ +  A +L  + A+ + GG GGGRP MAQ+GG +      A+A V 
Sbjct: 794 GKVGLIAGVTKDLIGQVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAEALPNALASVE 852

Query: 894 SFLKK 898
           ++L +
Sbjct: 853 AWLTE 857


>gi|84500806|ref|ZP_00999041.1| alanyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
 gi|84390873|gb|EAQ03291.1| alanyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
          Length = 892

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 441/899 (49%), Positives = 570/899 (63%), Gaps = 43/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F++ GHE++PSS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MQSLNDIRSTFLNYFKRQGHEIVPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+TKE  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELVTKELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY  D+EA  +WKK++GL  D+IIRI T DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKDRLLVTVYHTDDEAADIWKKVAGLPDDRIIRIPTADNFWQMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +   GG PGS  E+G+R+IEIWNLVFMQ+EQ     R  L   SIDTGMG+ER+A +LQ 
Sbjct: 181 DKFWGGPPGSPEEDGDRFIEIWNLVFMQYEQFEDGTRRELDAQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   T  + +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLMRALIEASAHQTSSEPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL QA+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPLMHRLVPELVRQMGEAYPELRQAQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  LS L +D  L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 QTLDRGLKLLDDELSGLPEDAALPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTEGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      +WF L +++GAT F+GYD                  
Sbjct: 420 SAMAEQKAKARAAWAGSGESADLSVWFDLADQHGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+++ GE VEE  SG++  +V +QTPFY EAGGQ+GDTG       
Sbjct: 462 -----TETAEGQILALIRDGEQVEELKSGEQGWIVTNQTPFYGEAGGQVGDTGWIRRLEN 516

Query: 540 RLQITDVQKKAEG----IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             +I  V    +     I+ H+  +++G  R   ++ L +D+  R  +  NHSATHLLH 
Sbjct: 517 EDEIATVTDTQKMGAGRIYAHNVTIDQGSFRASDAVALEVDHGRRATIRANHSATHLLHE 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS   PD LRFD +HS  ++  EL  IE +VN  I QN PV TRIM 
Sbjct: 577 ALREALGDHVAQRGSLNAPDRLRFDFSHSAALSPEELARIERDVNAFIRQNTPVETRIMT 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLY 709
            +DA   GA AL G KY D VRVVS+          G  +S  LCGGTHV+ TG+I    
Sbjct: 637 PDDARGLGAQALFGEKYGDEVRVVSMGQKATGKGAGGNTYSIELCGGTHVARTGDIGAFA 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           + SE++  AG+RRIEA+TG+ A + L G+D  L  +   LK +   VV RV+ + +E R 
Sbjct: 697 LTSETASSAGVRRIEALTGEAALAELRGRDTALAQIEGMLKATGPEVVSRVKAMMDERRA 756

Query: 770 LQLIHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           LQ   A+ +  L +             +I  V F++  +S V  K+L +++D  + +I S
Sbjct: 757 LQNEVAQLRRDLAMSGGAGQGGGAETREINGVKFLAQSLSGVSGKDLPALIDQFKDQIGS 816

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G ++L+      KA+V   VT DL DR +AVDL R +   LGG GGGGRP MAQ GG +
Sbjct: 817 GAVLLIA-DTGGKAAVAAGVTPDLTDRLSAVDLVRAAVPELGGKGGGGRPDMAQGGGAD 874


>gi|311278355|ref|YP_003940586.1| alanyl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308747550|gb|ADO47302.1| alanyl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 875

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 557/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKYAWELLTGDNWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVEVMGSAGDDLKRQQAQVEQIL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++    GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V    +GQ   V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVNSINAGQDAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFGFAVSDTQKYG-QAIGHLGKLSNGSLKVGDAVQADVDEVRRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NLPV T
Sbjct: 569 LMHAALRDVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  EDA A GA AL G KY+DRVRV+S+     G  S+ LCGGTH S TG+I L  I 
Sbjct: 629 HVMELEDAKAKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  + + L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIASLHAESDLLSDVAQLLKGDSHNLADKVRTVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESASLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|99081073|ref|YP_613227.1| alanyl-tRNA synthetase [Ruegeria sp. TM1040]
 gi|99037353|gb|ABF63965.1| alanyl-tRNA synthetase [Ruegeria sp. TM1040]
          Length = 902

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/909 (48%), Positives = 588/909 (64%), Gaps = 39/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++  Y  
Sbjct: 20  MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 79

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T EFD+
Sbjct: 80  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 139

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D+EAF++WKK  G+  ++IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 140 PKDKLYTTVYHTDDEAFEIWKK-VGVPEERIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 198

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 199 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 258

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLFK+LI+AS  VT  +  G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 259 THDNYETDLFKYLIEASATVTKSEPYGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 318

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG T+P+M  L+PAL ++MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 319 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 378

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD     L K ++L G+ AFKLYDT G PLD+ QD L A+G   +D   F+
Sbjct: 379 KTLDRGLKLLDDASGDLEKGDVLPGETAFKLYDTFGFPLDLTQDALRAKG-IEVDTDGFD 437

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+ ++RA  +GLG  T  K++F + +  G T+F+GY+                  
Sbjct: 438 AAMKAQKEQSRAGGIGLGDATDVKVYFDIVDAEGTTEFLGYE------------------ 479

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V+ G  V+ A +G+ V+++ +QTPFY E+GGQ+GD+G    +G 
Sbjct: 480 -----TEKAEGQIVALVKDGARVDSAKAGESVQIILNQTPFYGESGGQVGDSGMLTVEGG 534

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  KK EG+F+H A V  G +       + +D+  R Q+  NHSATHLLH AL  
Sbjct: 535 AARITDT-KKVEGLFLHIAEVTEGEIAVGSGAAMEVDHVRRSQIRANHSATHLLHEALRN 593

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ +L  I   VND I QN  V TRIM  +DA
Sbjct: 594 ALGDHVAQKGSLNAADRLRFDFSHNKAVSAEDLSKISAEVNDFIRQNSAVSTRIMTPDDA 653

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY + VRVVS+         DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 654 RALGAQALFGEKYGEEVRVVSMGRAPTGKGADGETYSIELCGGTHVKQTGDIGTFVILGD 713

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A +HL  +  ++  +A+ LK    +V+ R++ + +E + LQ  
Sbjct: 714 SASSAGVRRIEALTGAAAFAHLEREAGRMAEVAASLKAQPADVMERLKALMDERKALQNE 773

Query: 774 HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K Q+             +I    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 774 IATLKQQIAMGGGAGGGAEAKEIGGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 833

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + AD+A
Sbjct: 834 A-EDDGKVAVAAGVTDDLTGEISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGADEA 892

Query: 889 IAGVASFLK 897
           I    + LK
Sbjct: 893 IKAAEALLK 901


>gi|237748703|ref|ZP_04579183.1| alanyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229380065|gb|EEO30156.1| alanyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 877

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/910 (42%), Positives = 536/910 (58%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  GH ++ SSSL+P NDPTLM TN+GMV FK++F G +K  Y   
Sbjct: 8   MKSAEIRQKFLSFFEAKGHTIVRSSSLVPANDPTLMLTNAGMVQFKDVFLGLDKRPYTRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 68  TSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY ED+EA+ +W    GL  ++I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 128 ADKLWATVYYEDDEAYDIWANEIGLPKERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 187

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG P    E+G+RYIEIWNLVFMQF +  +     LP   +DTGMGLER+
Sbjct: 188 IFYDHGPDVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDEQGNMTPLPSPCVDTGMGLERL 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ + TG     NN  + +VI DH+R++SF+I DG++P 
Sbjct: 248 AAVLQHVHSNYEIDLFQNLIKAAARETGTTDLTNN--SLKVIADHIRATSFMIVDGLIPG 305

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           ++G GYVLRRI+RRA+ +   LG T+P    L+  L  EMG+AYPEL++A   ++  LR 
Sbjct: 306 SDGHGYVLRRIIRRALRHGYKLGQTKPFFYKLVEDLVKEMGAAYPELVEAAGYVQRVLRH 365

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERFG+TLD G+ +L+  L+      +LNG+ AF LYDT+G PLD+  DI   R +  +
Sbjct: 366 EEERFGETLDNGMKILESALTD--SSTVLNGETAFTLYDTYGFPLDLTADICRERNMT-V 422

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F+ A+E+QR+ ARA      +         L+     TQF+GY+ L          
Sbjct: 423 DEAGFDVAMEKQRATARASGKFKMAAA-------LEYHGEKTQFVGYERLEEV------- 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V AI + G  V++  +GQ   +V D TPFYAE+GGQ+GD G 
Sbjct: 469 ----------------GTVVAIYRDGTPVDKIETGQNGVIVLDTTPFYAESGGQVGDVGT 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +G+G+R  + D QK    +  HH  +  G +     L   ++ + R Q   NHS THL+
Sbjct: 513 LVGNGVRFDVEDTQKIQADVAGHHGKLVNGTITIGDKLDGRVNMEMRAQTMRNHSVTHLM 572

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV+Q GS + P+  RFD +H+ PIT  E++ +E+ VN  I  N P  T  
Sbjct: 573 HKALRQVLGSHVAQRGSLVDPEKTRFDFSHNAPITDDEIRQVEEIVNREIVANNPTETHQ 632

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++AIA GA AL G KY D VRV+ +        S  LCGGTHVS TG+I    +VSE
Sbjct: 633 MSFDEAIAHGATALFGEKYGDVVRVLDIG------FSCELCGGTHVSRTGDIGFFKVVSE 686

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AGIRRIEA+TG  A   +     K+   AS LK     +V R+ ++ +  + L   
Sbjct: 687 GGVAAGIRRIEAVTGLVAMQWVQDMARKVGEAASALKTQPDELVNRIVQVQDHIKGLDRE 746

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  K +               I  V  ++ +I   D   L+S MD L+ K+++  I+L 
Sbjct: 747 LSTLKAKFASSQGDDLADKATDIKGVKVLAAMIEGADVSGLRSTMDKLKDKLKTAAIVLA 806

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K S++  VT D+  +  A +L    AK + GG GGGRP MA +GG + +  D A
Sbjct: 807 AV-NDGKVSLIAGVTSDMTSKLKASELVNHVAKQV-GGKGGGRPDMAAAGGTDPSGLDGA 864

Query: 889 IAGVASFLKK 898
           +  V  ++++
Sbjct: 865 LNSVGGWVQE 874


>gi|254418413|ref|ZP_05032137.1| alanyl-tRNA synthetase [Brevundimonas sp. BAL3]
 gi|196184590|gb|EDX79566.1| alanyl-tRNA synthetase [Brevundimonas sp. BAL3]
          Length = 882

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/902 (47%), Positives = 569/902 (63%), Gaps = 34/902 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR T+L FF  +GHE + S+ L+P NDP+L+F N+GMVPFK+ FTG  KP Y  
Sbjct: 1   MPSLNEIRATYLNFFAADGHEKVHSAPLVPQNDPSLLFVNAGMVPFKDYFTGASKPPYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI  AW L+T+EF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEHAIDRAWKLVTQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY +D+EA  +WKK++G   DKIIRI  +DNFW+M ++GPCGPC+EIF+D G
Sbjct: 121 DAKRLLVTVYIDDDEAAAIWKKVTGFGDDKIIRIAGSDNFWAMGDSGPCGPCTEIFWDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG P    E+G+RY+EIWN VFMQFE++N Q    LPK S+DTGMGLERM TVLQ 
Sbjct: 181 DKIAGGPPGSPDEDGDRYVEIWNNVFMQFEKENDQIVRNLPKPSVDTGMGLERMTTVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLFK LI ASE  T  K +G    +HRVI DHLRSSSFLIADG+ P+NEGRGY
Sbjct: 241 VHSVFETDLFKTLIAASEDATSTKSDGERAASHRVIADHLRSSSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL +A+  IE+TL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVAQMGDAYPELARAQPFIEDTLKQEEVRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ L D  +      ++L+G  AF L DT+G PLD+ QD    RG + +++  F 
Sbjct: 361 TTLGRGMALFDTAVQGFKPGDMLDGQTAFTLSDTYGFPLDLTQDEARRRGFS-VNVDGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR R+R H  G G       W +++++ G T F GYD + G              
Sbjct: 420 SAMAEQRQRSREHWKGSGQTANTNEWLAIRDRMGPTVFTGYDTIEG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  V A++  G  VE A +G  VE++FD TPFYAE+GGQ GD G     G 
Sbjct: 466 ---------SGEVLALMNGGAPVETAEAGDIVEILFDNTPFYAESGGQTGDQGTLEWPGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ DV+K A  + V  A +  G L     +   +D   R     NHSA HLLH AL  
Sbjct: 517 EAEVLDVKKHAGDLHVLSAQITAGTLEIGARVAQLVDADKRMTTRANHSAAHLLHTALKN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG  V+Q G  +  +  RFD +H  P+T  EL +IE  VN +I QN+P  TR+M  ++A
Sbjct: 577 VLGPAVAQKGQLVDSERARFDFSHGAPVTEDELAAIEAEVNAVIRQNVPAETRLMAPQEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++      D   +S  LCGGTHV+ TG+I L  +V E+ +
Sbjct: 637 IEAGAIALFGEKYGDEVRVLTLGRSLVSDNAPYSVELCGGTHVARTGDIGLFKVVQETGV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ AR +L  Q +  ++LA   K+   +V GRVE +    + L+   A+
Sbjct: 697 AAGVRRIEALTGEAARLYLEAQAKVTRNLARDFKIQTQDVPGRVEALQGSVKTLEKQVAE 756

Query: 777 RKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K QL +        +  +I  +  M+ ++  VD K L+ V +  +K++ +G++ L+G++
Sbjct: 757 LKKQLALGGGSGAASAPEEIGGIKLMARVLDGVDGKGLRGVAEDFRKQVGTGVVALIGVT 816

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E KA+V + VT DL DR NA DLAR +   +GG G GG+P  AQ G P+G+KA+  +A 
Sbjct: 817 -EGKAAVTVAVTSDLTDRVNAADLARTAVIAMGGQGAGGKPDFAQGGAPDGSKAEAGLAA 875

Query: 892 VA 893
           V 
Sbjct: 876 VR 877


>gi|326567519|gb|EGE17634.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC1]
          Length = 893

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/922 (40%), Positives = 520/922 (56%), Gaps = 56/922 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y
Sbjct: 1   MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
               + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K
Sbjct: 61  VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169
              L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPC
Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180

Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EIF+D GE I GGLP    E+G+RYIEIWN VFMQF +Q       LPK S+DTGM
Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GLER++ ++Q    NY+ D+F  L+  +  +       +  N  + +V+ DH+RS +FLI
Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  
Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE+ +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+ 
Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  ID   F  ++ EQR+RAR              + +L +   AT+F+GY+ L   
Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  + Q G+ V+    G +  ++ D+TPFYAE+GG
Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+G+ G    +     + D QK  + I   H +V+ G +    S    +  Q R   + N
Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N
Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704
            P    I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+
Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  IVSE  I AG+RRIEA+TG  A  ++   D++L  LA+  K  +  +  RV ++ 
Sbjct: 690 IGLFKIVSEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R L+    +   +L     +        I     +   ++ +D+K L+++ D ++ K
Sbjct: 750 DKNRHLEKQIERLNQKLASLHANSLTDNLKDIHGQKVLIATVNGMDNKTLRTLSDDMKSK 809

Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ
Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTSKIKAGDIIKYLSENL-GGKGGGKPDFAQ 868

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            G  +     + + G+  ++ +
Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890


>gi|145220|gb|AAA03208.1| alanyl-tRNA synthetase [Escherichia coli]
          Length = 876

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/910 (42%), Positives = 553/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSS  P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSRYPITDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTND-------NFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N        NFW M  TGPC PC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRINDNKGAPYASGNFWRMGGTGPCDPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR              + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK       H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVS  GS +    LRFD +H++ +   E++++ED VN +I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSHKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTLIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|2500961|sp|Q56273|SYA_THIFE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1263913|emb|CAA64818.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans]
          Length = 877

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/904 (43%), Positives = 535/904 (59%), Gaps = 39/904 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               +IR  FLE+F + GH+++PSS LIP NDPTL+FTN+GMVPFK++F G E   Y+  
Sbjct: 1   MQAQAIRQAFLEYFVEQGHQIVPSSPLIPRNDPTLLFTNAGMVPFKDVFLGLETRPYRRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK   I  AW  LT+   L 
Sbjct: 61  VSSQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGFAWRFLTERLGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ITVY+ED+EA  +W    G+   ++ R    DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 PEKLWITVYEEDDEAADIWMNEIGVDPARLSRCGEKDNFWSMGDTGPCGPCSEIFYDHGP 180

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            IPGG PGS  E+G+RYIEIWNLVFMQF++ +      LPK S+DTGMGLER+A VLQ  
Sbjct: 181 HIPGGPPGSPEEDGDRYIEIWNLVFMQFDRDSSGTLTPLPKPSVDTGMGLERLAAVLQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            NNYD DLFK LI A+  ++G  Y  +    ++ RV+ DH+R+ SFLI DG+LPANEGRG
Sbjct: 241 HNNYDTDLFKPLIAAAAAISGKTYGSDAATDISLRVLADHIRACSFLITDGVLPANEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + R LG        L+  L  EMGSA+PEL +A+  +E  L  E+ RF
Sbjct: 301 YVLRRIIRRAVRHGRKLGMETVFFHQLVAPLVAEMGSAFPELTRAQREVERALEREETRF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL+RGL LL+  ++ L     + G++ F+L DT G P+D+  DI   R L  +D+  +
Sbjct: 361 RETLERGLSLLEEAIADLAAGAAIPGEIIFRLADTFGFPVDLTADIARERDLI-MDMEGY 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A+ ++RS       G G   TE+++  L  +   T+F GY                  
Sbjct: 420 EAAMADERSPLPCRLGGSGEVKTERVYHDLAMRLPVTEFTGY------------------ 461

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                 T      V A+++ GE V    +G    V+ D+TPFY E+GGQ GD G    + 
Sbjct: 462 -----STCADEGKVVALIRDGEEVAFLEAGDMGVVILDRTPFYGESGGQAGDRGELQSND 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +TD QK    + VH   VE G L+    +V ++D   RR  + +HSATHLLH AL 
Sbjct: 517 ALFAVTDTQKPMGHLHVHLGRVESGRLQIGDMVVASVDEVARRATAAHHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILGSHV Q GS + P+ LRFD +H +P+T+A+L+ IE  VN  I  N+   TRI+   +
Sbjct: 577 NILGSHVQQKGSLVNPERLRFDFSHPEPVTAAQLREIERVVNAAIRNNVGAETRILPVAE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY D VRVV +     G  S  LCGGTHV + G+I +  I+SES + A
Sbjct: 637 AQALGAMALFGEKYGDEVRVVRM-----GDFSMELCGGTHVEALGDIGVFKILSESGVAA 691

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEA+TG  A   +   +E+L++ A  LKV+   +  R+ +  E  R+L+    K K
Sbjct: 692 GIRRIEAVTGAVALEAIQRDEERLQAAAGLLKVAPAELDQRLAQTLERLRQLEKELEKVK 751

Query: 779 LQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
               V            +  V  +   +  +D K L+  +D L+ ++  G+I+L G+ +E
Sbjct: 752 RDEAVRAGAGLAAEAEDVGGVPVLIRRLEGMDGKALRDALDRLRSQLPDGVIVLAGVERE 811

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K +++  V + L  R +A +L    A+ L GG GGGRP +AQ+G  N    D A+    
Sbjct: 812 -KVALIAGVGKGLTGRVHAGELVNTVAQPL-GGKGGGRPELAQAGAGNPAALDAALNAAR 869

Query: 894 SFLK 897
            ++K
Sbjct: 870 DWVK 873


>gi|144899258|emb|CAM76122.1| Alanyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 881

 Score =  896 bits (2315), Expect = 0.0,   Method: Composition-based stats.
 Identities = 450/904 (49%), Positives = 597/904 (66%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   ++IR  FL++F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MQTANTIRRAFLDYFAKNGHEVVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI LAW+L+TKEF L
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAIALAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY +D+EAF +WKK++G S D+IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 AKDKLLVTVYHDDDEAFNIWKKVAGFSDDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG P    ++G+R+IEIWNLVFMQFEQ +KQ R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DKIAGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKQTRLPLPKPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYD+DL + LI+AS   +    +G   V+HRV+ DHLRSS FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDVDLLRALIEASAHESNTDADGPYKVSHRVVADHLRSSCFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G TEPL+  L PAL  +MG AYPEL +A  LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLMGCTEPLLWRLFPALAKQMGEAYPELGRAGALITETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLD+GL LLD  L+HL     L G+VAFKLYDT+G PLD+ +D L A+G  G+D   F 
Sbjct: 361 ATLDKGLKLLDDELTHLVPGAKLAGEVAFKLYDTYGFPLDLTEDALKAKG-IGVDTDGFA 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ AR    G G   TE +WF +KEK GA++F+GYD +                
Sbjct: 420 TAMDRQRAEARKAWSGSGEAATETLWFEIKEKTGASEFLGYDAI---------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GD 537
                  G    + A+V+ G+ VE    G +V VV +QTPFY E+GGQ+GDTG     G 
Sbjct: 464 -------GAEGQIVALVEGGKAVEAVHPGHEVMVVANQTPFYGESGGQMGDTGIISVAGG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             R+ +TD  KK   + VH   VE G +         +D   R     +HSATHLLH AL
Sbjct: 517 KARIVVTDTLKKLGDLIVHVGKVEGGPVAVGEDAHFAVDETRRDATRGHHSATHLLHQAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG HV+Q GS + PD LRFD  H K +++ E++ +E  VN  I +N  VVT++M+ +
Sbjct: 577 RDALGEHVTQKGSQVGPDRLRFDFAHPKGLSTDEIRLVEAEVNRQIRKNRAVVTKLMSPD 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           DAI +GA AL G KY + VRVVS+  +D      S  LCGGTHV   G+I    I+SES+
Sbjct: 637 DAIEAGAMALFGEKYGEEVRVVSMGGDDSRPNPFSVELCGGTHVRRVGDIGGFKILSESA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RR+EA+TG    +    Q+E L   A  LK +   +  R+ ++ E+ RKL+   +
Sbjct: 697 VAAGVRRVEAVTGPAFLAWANEQEELLARAAQALKAAPAELPARIAQLVEDRRKLERELS 756

Query: 776 KRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + + QL        +  +I  + +   ++  V +K+LK + D ++K+I SG+++LV  + 
Sbjct: 757 ETRKQLATGGGAGAATTQINGITYAGRVLDGVPAKDLKGMADEIKKQIGSGVVVLVS-ND 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             KASV++ VT+DL  + +AVDL R+ ++ +GG GGGGRP MAQ+GGP+ +KA  A+  +
Sbjct: 816 GGKASVVVAVTDDLTAKHSAVDLVRIGSEAVGGKGGGGRPDMAQAGGPDADKAQDAVDKI 875

Query: 893 ASFL 896
           A+ L
Sbjct: 876 AAAL 879


>gi|66768815|ref|YP_243577.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|81305217|sp|Q4UTR6|SYA_XANC8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|66574147|gb|AAY49557.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 882

 Score =  896 bits (2315), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/909 (42%), Positives = 537/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF+LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+ID+F+ LI  +  +TG+        + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +     ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     EI+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDDVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA       G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVATMAPTVFLGYEAQDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  V+ A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + +++ D QK A     H   +  G L+    L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGTDVSIEVADTQKFAGQFHGHVGRIAEGALKLGDVLSGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRV+ +       +S+ LCGGTHVS TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKMGG-----YSTELCGGTHVSRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   +V +V  + +  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAANLLGGNSTEIVDKVRALTDRQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AA-GGKVALVAGVNGGPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 QGVPSWVKQ 879


>gi|188991930|ref|YP_001903940.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|205830286|sp|B0RTY1|SYA_XANCB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167733690|emb|CAP51895.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 882

 Score =  896 bits (2315), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/909 (42%), Positives = 536/909 (58%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF+LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+ID+F+ LI  +  +TG+        + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +     ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     EI+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDDVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA       G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVATMAPTVFLGYEAQDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  V+ A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  I +++ D QK A     H   +  G L+    L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGTDISIEVADTQKFAGQFHGHVGRIAEGTLKLGDVLSGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRV+ +       +S+ LCGGTHVS TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKMGG-----YSTELCGGTHVSRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   AS    +   +V +V  + +  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAASLFGGNSTEIVDKVRALTDRQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AA-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 QGVPSWVKQ 879


>gi|254505107|ref|ZP_05117258.1| alanyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
 gi|222441178|gb|EEE47857.1| alanyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
          Length = 885

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/907 (50%), Positives = 613/907 (67%), Gaps = 36/907 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+ FL++F+ N HE++ S  L+P NDPTLMF N+GM  FKN+FTG E   Y  
Sbjct: 1   MTGVNEIRSAFLDYFKANDHEVVDSGPLVPRNDPTLMFANAGMNQFKNVFTGLETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AVTAQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY ED++A   WKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDRLLVTVYAEDDDAAVFWKKIAGLSDDKIIRIPTSDNFWTMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG P    E+G+R++EIWNLVFMQ+EQ     R  LP+ SIDTGMG+ER+ATVLQ 
Sbjct: 181 DHIWGGPPGTPEEDGDRFVEIWNLVFMQYEQTPD-SRLDLPRPSIDTGMGIERLATVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLF+ LI ASE  TG++  G+ + +HRVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 240 VHNNYDIDLFRALISASEHETGVEASGDALSSHRVISDHLRSTSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRR M +A LLG  +PLM  L+P+L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 300 VLRRIMRRGMRHAHLLGARDPLMHKLVPSLIREMGRAYPELTRAEALITETLKLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD     L     L+G+ AFKLYDT+G PLD+ QD L       +D   F+
Sbjct: 360 KTLERGLGLLDTATEDLTAGGQLDGETAFKLYDTYGFPLDLTQDALR-VRDITVDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   TE +WF++KEKYGAT F+GY+                  
Sbjct: 419 AAMERQKAEARAAWSGSGGAATEAVWFAMKEKYGATDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     IV  +        E  +G+   VV +QTPFY E+GGQ+GDTG     G+
Sbjct: 461 -----TEVAEGIVAGLAADDAETNELKAGETGFVVLNQTPFYGESGGQVGDTGVMTAPGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ +TD QKKA+G+FVH   V+ G +  E++L L +D+  R  +  NH+ATHL+H AL  
Sbjct: 516 KITVTDTQKKADGLFVHVVTVDEGTVTPELALELKVDHDRRSAVRSNHTATHLVHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS ++PD LRFD +H KP++  EL  +E   N+II QN  V TR+M  +DA
Sbjct: 576 VLGTHVAQKGSLVSPDRLRFDFSHPKPMSDDELAIVETFANEIILQNASVETRLMAVDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I +GA AL G KY + VRVVS+       + G  +S  LCGGTHV  TG+I L+ +VSE 
Sbjct: 636 IEAGAMALFGEKYGEEVRVVSMGTALHGDKTGKPYSLELCGGTHVKRTGDIGLVTLVSEG 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG  AR++L  QD++L+ +A  LKV  G+V  RV ++ EE RKL+   
Sbjct: 696 AVAAGVRRIEALTGAEARTYLDTQDKRLREVAGILKVGTGDVPSRVAQLVEERRKLEKEL 755

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  + +L +   +              M+  +  ++ K+LK + D  + ++ SG+++L+ 
Sbjct: 756 ADARKKLAMGGGADGGTPVKDAGSFKLMARTVEGINPKDLKGMADEAKTQLGSGVVVLIN 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++++ KA+++  VT DL ++ +AVDL R+ ++ LGG GGGGRP MAQ+GGP+G+KA+ A+
Sbjct: 816 VAEDGKAAIVTAVTRDLTEKVSAVDLVRIGSEALGGRGGGGRPDMAQAGGPDGSKAESAV 875

Query: 890 AGVASFL 896
           + + + L
Sbjct: 876 SAIEAHL 882


>gi|326571434|gb|EGE21449.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC7]
          Length = 893

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/922 (39%), Positives = 521/922 (56%), Gaps = 56/922 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y
Sbjct: 1   MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
               + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K
Sbjct: 61  VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169
              L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPC
Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180

Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EIF+D GE I GGLP    E+G+RYIEIWN VFMQF +Q       LPK S+DTGM
Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GLER++ ++Q    NY+ D+F  L+  +  +       +  N  + +V+ DH+RS +FLI
Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  
Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE+ +  E+E+F KTL +GL LL   L  L + ++L G+  FKLYDT+G P D+  DI+ 
Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVR 420

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  ID   F  ++ EQR+RAR              + +L +   AT+F+GY+ L   
Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  + Q G+ V+    G +  ++ D+TPFYAE+GG
Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+G+ G    +     + D QK  + I   H +V+ G +    S    +  Q R   + N
Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N
Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704
            P    I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+
Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ 
Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R L+    +   +      +        I     +   ++ +D+K L+++ D ++ K
Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809

Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ
Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKYLSENL-GGKGGGKPDFAQ 868

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            G  +     + + G+  ++ +
Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890


>gi|149184401|ref|ZP_01862719.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. SD-21]
 gi|148831721|gb|EDL50154.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. SD-21]
          Length = 887

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/909 (47%), Positives = 592/909 (65%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL+FF    H  +PS+ L+P +DPTLMF N+GMVPFKN FTG E P    
Sbjct: 1   MTSTNEIRRSFLDFFASKDHAEVPSAPLVPFSDPTLMFVNAGMVPFKNAFTGLETPPAPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTK++ L
Sbjct: 61  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIDHAWTLLTKDWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EAF LWKK +G + ++IIRI T DNFW+M   GPCGPCSEIF+D G
Sbjct: 121 DKDRLLVTVYHTDDEAFDLWKKRTGFADERIIRIPTKDNFWAMGSDGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQF Q+  +    LPK SIDTGMG+ER+A V+Q 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQFTQEADEIVGDLPKPSIDTGMGIERVAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI ASE +TG+K EG+   +HRVI DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 241 VHDNYDTDTFKALIGASEALTGVKAEGDRQASHRVIADHLRSTSFLLADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG ++PLM  L+P L +EMG+AYPEL++ + LI+E L  E+ +F 
Sbjct: 301 VLRRIMRRAMRHAHLLGASQPLMHRLVPELVSEMGAAYPELVRGQALIQEVLEREETQFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+GL LLD     +G+   L+G  AFKLYDT+G P D+ +D L  RG  G+D   F+
Sbjct: 361 RTLDKGLKLLDEATGDMGEGGTLDGGTAFKLYDTYGFPYDLTEDALRNRG-IGVDKDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ ARA   G G   +E++WF + E+ G+T+F GY                   
Sbjct: 420 AAMAQQKAAARAAWKGSGEAASEEVWFDIAEREGSTEFTGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                ++   + V A+V+ G+ V+ A  G+ V ++ +QTPFY E+GGQ GD G       
Sbjct: 461 ----SSDTGEAEVVALVKDGKEVDSAGEGEDVIILTNQTPFYGESGGQTGDAGRIWTPEG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              +++   K    +  H A + +G ++   ++   ID + R ++  NHSATHL+H AL 
Sbjct: 517 LEAKVSTTNKPLGRLHTHVATIAKGNVKVGDAVHFEIDAERRDRIRANHSATHLVHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS ++ D  RFD +H KP++  ++ +IE  VN+ I  N  V TR+M  +D
Sbjct: 577 NRLGGHVTQKGSLVSDDRFRFDFSHPKPLSDEDIAAIEAEVNEEIRANETVGTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+A+GA AL G KY D VRV+S+     +G  +S  LCGGTHV +TG+I L  IVSES++
Sbjct: 637 AVAAGALALFGEKYGDEVRVLSMGRKGGEGKNYSVELCGGTHVEATGDIGLFKIVSESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA+TG+ AR  L+ +DE ++++A+ LK S      RV  + +E ++L+   A+
Sbjct: 697 SSGVRRIEALTGEAARQWLLARDETVRAIAAALKTSPDEAATRVSALVDERKRLEKELAE 756

Query: 777 RK-------LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K               +  +I  V F   +I  +  K+L+ ++D  + ++ SG+  +  
Sbjct: 757 AKRALALGGGGAGDAAAADEEIGGVKFSGQVIEGLSPKDLRPLLDEAKTRMGSGVAAICA 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  E K +  + VT+DL +RF+AVD  R   + LGG GGGGRP MAQ GGP+G+KA+ AI
Sbjct: 817 V-NEGKGAFAVAVTDDLTERFSAVDFVRAGVEALGGRGGGGRPDMAQGGGPDGSKAEDAI 875

Query: 890 AGVASFLKK 898
           A V   L K
Sbjct: 876 AAVRDALAK 884


>gi|118340595|gb|ABK80645.1| putative alanyl-tRNA synthetase class IIc [uncultured marine
           Nitrospinaceae bacterium]
          Length = 878

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/907 (39%), Positives = 537/907 (59%), Gaps = 42/907 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  FL++F+  GH ++ S +L+P NDPTLMFTN+GMV FK++F G+EK  Y   
Sbjct: 1   MTGDELRKKFLQYFEDRGHTVVSSYALVPKNDPTLMFTNAGMVQFKDVFLGEEKRDYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQKCVRAGGKHNDL+ VGRT+RHHTFFEMLGNFSFG YFK+ AIQ  W+ LT    L 
Sbjct: 61  VSVQKCVRAGGKHNDLEMVGRTSRHHTFFEMLGNFSFGDYFKKEAIQFGWEFLTDVIGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLYI+V+++D++AF +W     +  ++I ++   DNFW+M  TGPCGPCSEIF DQG+
Sbjct: 121 RDRLYISVFEDDDDAFNIWVDDIKMPRERIYKLGEKDNFWAMGSTGPCGPCSEIFIDQGK 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            I  G P      + +R++EIWNLVFMQ+++    +   LP   IDTGMGLER+A V+Q 
Sbjct: 181 AIGCGQPSCEVGCDCDRFLEIWNLVFMQYDRDKAGKLTPLPHPCIDTGMGLERLAAVVQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +T NYD DL   +I  + ++TG +Y   N   V+ RV+ DH R+S FLI+DG++P+NEGR
Sbjct: 241 RTTNYDTDLMMSIITVAARITGKEYGKQNEVDVSLRVLTDHARASVFLISDGVIPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RRA+ + +LL    P    +   +  +   AYPEL      I++ + +E+E 
Sbjct: 301 GYVLRKIIRRALRHGKLLEQKGPFFHRITSKVIEDFKGAYPELSGNSEFIQKVVINEEES 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL  G   L+ ++  + KD+   + G+  FKLYDT+G P D++++     GL  +D+
Sbjct: 361 FSNTLHYGTQRLEEIIEKVSKDKLCTIPGEEIFKLYDTYGFPTDLVEETAKDAGLT-LDM 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             + +A+ EQR++A     G G       +    +    T F GY   +G          
Sbjct: 420 EGYTRAMNEQRTKATNSWKGSGEKEVPPFYREFLQSSAPTVFEGYGTTQG---------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           + AI++    VE A +G ++E + D+TPFY E+GGQ GD+G A 
Sbjct: 470 -------------QGKILAILKDHAPVESASTGDEIEFLTDKTPFYGESGGQTGDSGRAS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            + ++L + D  K   G+ VH A +  G +R   +L L +  Q R   ++NHSATHLL  
Sbjct: 517 NENVQLSLDDATKPLPGLIVHKAKIISGTMRNGETLKLEVHPQVRGNTALNHSATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H+ Q GS +  D LRFD TH  P+T  E   IE  VN+ I  N+ V T+ M+
Sbjct: 577 ALKEVLGEHIKQAGSLVASDRLRFDYTHFSPLTDKERVRIESRVNEKIRDNIQVATQEMD 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + AI  GA AL G KY D VRVV V        S  LCGGTHV++TG+I L  I SE S
Sbjct: 637 IDTAIKEGAVALFGEKYGDTVRVVDVLG-----FSKELCGGTHVNATGDIGLFRITSEGS 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRIEA+TG +A +++  + E L ++   LK      + +++++ E+ R+L+    
Sbjct: 692 IASGVRRIEAVTGAKAYNNIQAEQESLAAIRVLLKAPSNEEITKLKKLLEKNRQLEKEIT 751

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K ++             KI DV+ +   I  +D+K L++ +D  + +++SGI+++  +
Sbjct: 752 TLKEKMVNGQESSGLDEVQKIGDVSVLIKKIEGMDAKTLRTFIDNTKNQLKSGIVVVGSV 811

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + + K S+ + VT+DL  +++A ++ +  A V+ GG GGGRP MAQ+GGP   K DQA+ 
Sbjct: 812 A-DGKVSMAVGVTKDLTGKYHAGNIIKSIA-VIVGGSGGGRPDMAQAGGPEIEKLDQALK 869

Query: 891 GVASFLK 897
                ++
Sbjct: 870 KAEELIR 876


>gi|326561486|gb|EGE11830.1| alanyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
          Length = 893

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/922 (39%), Positives = 520/922 (56%), Gaps = 56/922 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y
Sbjct: 1   MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
               + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K
Sbjct: 61  VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169
              L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPC
Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180

Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EIF+D GE I GGLP    E+G+RYIEIWN VFMQF +Q       LPK S+DTGM
Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GLER++ ++Q    NY+ D+F  L+  +  +       +  N  + +V+ DH+RS +FLI
Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  
Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE+ +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+ 
Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  ID   F  ++ EQR+RAR              + +L +   AT+F+GY+ L   
Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  + Q G+ V+    G +  ++ D+TPFYAE+GG
Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+G+ G    +     + D QK  + I   H +V+ G +    S    +  Q R   + N
Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N
Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704
            P    I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+
Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ 
Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R L+    +   +      +        I     +   ++ +D+K L+++ D ++ K
Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809

Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ
Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQ 868

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            G  +     + + G+  ++ +
Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890


>gi|39936908|ref|NP_949184.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|48428511|sp|P61706|SYA_RHOPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|39650765|emb|CAE29288.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
          Length = 889

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/899 (50%), Positives = 607/899 (67%), Gaps = 39/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 KKDKLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG P    E+G+R++E WNLVFMQ++Q  K ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI A+    G      +  + RVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VDSVFDTDLFRSLIDATSSALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG +EPLM  L+ AL  EMG AYPEL++A+ +IEET+R E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L  RG   +DI SF 
Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRG-INVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WFSL+EK GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKLGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G  V+   +G+   ++ +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 462 -----TETAEGVVTALVKDGAEVDALKAGESGAIIVNQTPFYAESGGQVGDTGVLTADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +TD  KKA  +FVH   VE+G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFVVTDTMKKAGDLFVHFGTVEQGSIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  VVTR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ I  E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAARDHGSNVFGWSVELCGGTHVKRTGDIGLVSITGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ AG+RRIEA+TG+ AR +        K  AS L+ +  ++  R+  + +E +KL+  
Sbjct: 697 SAVAAGVRRIEALTGRAARHNANAAISTAKLAASELRTTLDDMPARITALMDERKKLERE 756

Query: 774 HAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            ++ + +L +               I  +  M+  +  ++ K+LK ++D  +K++ SG+I
Sbjct: 757 LSEARKKLAMGGSAAGDGAASDVRDIGGIKLMARAVEGIEIKDLKGLVDQGKKQLGSGVI 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            LV  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K
Sbjct: 817 ALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 875


>gi|21231177|ref|NP_637094.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|24418692|sp|Q8P9X0|SYA_XANCP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21112818|gb|AAM41018.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 882

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/909 (42%), Positives = 537/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF+LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVALPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+ID+F+ LI  +  +TG+        + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +     ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     EI+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDDVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA       G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVATMAPTVFLGYEAQDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  V+ A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + +++ D QK A     H   +  G L+    L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGTDVSIEVADTQKFAGQFHGHVGRIAEGALKLGDVLSGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRV+ +       +S+ LCGGTHVS TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKMGG-----YSTELCGGTHVSRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   +V +V  + +  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAANLLGGNSTEIVDKVRALTDRQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AA-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 QGVPSWVKQ 879


>gi|24374938|ref|NP_718981.1| alanyl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|38372525|sp|Q8EBS1|SYA_SHEON RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|24349653|gb|AAN56425.1|AE015779_2 alanyl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 874

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/909 (41%), Positives = 550/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLMLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+     +  + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVAD--LSNKSLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDSALNELQ-GDTLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYSELTG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ V A+   GE V    +G    VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------NAKVTALYLNGESVPAINTGDDAVVVLDVTPFYAESGGQVGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  GI   + D QK  +        +  G L     L   +D + R +  +NHS THLLH
Sbjct: 511 MAQGIEFTVNDTQKFGQASGHK-GTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +   ELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPFELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  AS LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAASLLKADAHSVVTKLKVQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + K +L     +        +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 VAQEGKVNLIAGVSNDLIAKIKAGELVAMVATQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           + V  ++ +
Sbjct: 863 SQVLPWITE 871


>gi|90020946|ref|YP_526773.1| alanyl-tRNA synthetase [Saccharophagus degradans 2-40]
 gi|123396361|sp|Q21L68|SYA_SACD2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89950546|gb|ABD80561.1| alanyl-tRNA synthetase [Saccharophagus degradans 2-40]
          Length = 875

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/911 (42%), Positives = 550/911 (60%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F+  GH  + SSSL+P NDPTL+FTN+GMV FK++F GQ+   Y   
Sbjct: 1   MKSAEIREAFLQYFESKGHSRVASSSLVPGNDPTLLFTNAGMVQFKDVFLGQDNRSYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +   
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAINYAWEFLTSKEWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           +   +L +TVY +D+EA+ +W    G+  D+IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 IPTEKLCVTVYADDDEAYGIWANDVGVPEDRIIRIGDNKGGRYNSDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG P    E+G+R+IEIWN+VFMQF +    E   LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGEHIWGGRPGTPEEDGDRFIEIWNVVFMQFNRSVDGEMAPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A V+Q   +NY+IDLF+ L++A+ Q T  +    +  + RVI DH+RS +FL++DG+L
Sbjct: 241 RIAAVMQHVHSNYEIDLFQALLEAAAQATQAED--KDAKSLRVIADHIRSCAFLVSDGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T+P    L+ AL  +MG AYPEL++ +  IE+ L
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGQTKPFFHTLVAALVEQMGEAYPELVRDQASIEKVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
            +E+++F KTL++G+V+L+  LS L    I+ G+V F LYDT+G P+D+  DI   R L 
Sbjct: 359 AAEEDQFAKTLEKGMVVLESALSELK-GTIIPGEVIFTLYDTYGFPVDLTNDIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D+  ++  +E+Q+ RAR       SG+ +  + +     G T F+GY  L G      
Sbjct: 418 -LDMDGYDALMEQQKKRARE------SGSFKVDYSATATIEGHTNFVGYSELTGD----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V AI+  GE V+    GQ   +V D TPFY E+GGQ GDT
Sbjct: 466 ------------------ASVTAILVDGENVDTLTEGQSGVIVLDTTPFYGESGGQAGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG + ++ D QK      +H   +  G ++        +D   R+  ++NHSATH
Sbjct: 508 GYIVFDGAKFEVQDCQKSGAN-HLHVGQLLAGAVKVGDKAQPVVDSAVRQATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +   ELK IE  VN+ I  N PV T
Sbjct: 567 LLHAALRKVLGEHVTQKGSLVDSERLRFDFSHFEAVKPEELKQIESMVNEQIRLNSPVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + E A   GA AL G KY D VRV+S+    GG  S  LCGGTHVS TG+I L+ I 
Sbjct: 627 ELCDMEAAQQKGAMALFGEKYGDEVRVLSM----GGAFSVELCGGTHVSRTGDIGLIRIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG++A S +    + L + A  LK S  N++ +VE++  + R+L+
Sbjct: 683 SESGIASGVRRIEAVTGEKALSVIDASADTLNAAAKLLKASPENLLDKVEQLIAQNRQLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L              IA V  ++  +  VD+K L+ +MD L+ K+ +  ++
Sbjct: 743 KSLAAAKSKLASSSADEWLSEATDIAGVKVLAKAVEGVDAKSLRDMMDKLKNKLGTSAVI 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S++  V++D   +  A D+ +  A ++GG G GGRP MAQ GG +     
Sbjct: 803 LASV-NDDKISLVAGVSQDATSKIKAGDMVKHVAGLIGGKG-GGRPDMAQGGGTDVEALP 860

Query: 887 QAIAGVASFLK 897
            AI  V  + K
Sbjct: 861 AAIGSVLDWAK 871


>gi|326577502|gb|EGE27382.1| alanyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 893

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/922 (40%), Positives = 521/922 (56%), Gaps = 56/922 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y
Sbjct: 1   MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
               + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K
Sbjct: 61  VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169
              L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPC
Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180

Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EIF+D GE I GGLP    E+G+RYIEIWN VFMQF +Q       LPK S+DTGM
Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GLER++ ++Q    NY+ D+F  L+  +  +       +  N  + +V+ DH+RS +FLI
Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  
Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE+ +  E+E+F KTL +GL LL   L  L + ++L G+  FKLYDT+G P D+  DI+ 
Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVR 420

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  ID   F  ++ EQR+RAR              + +L +   AT+F+GY+ L   
Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  + Q G+ V+    G +  ++ D+TPFYAE+GG
Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+G+ G    +     + D QK  + I   H +V+ G +    S    +  Q R   + N
Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N
Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704
            P    I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+
Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SE  I AG+RRIEAITG  A +++   D++L  LA+  K  +  +  RV ++ 
Sbjct: 690 IGLFKIISEQGISAGVRRIEAITGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R L+    +   +      +        I     +   ++ +D+K L+++ D ++ K
Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKTLRTLSDDMKSK 809

Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ
Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQ 868

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            G  +     + + G+  ++ +
Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890


>gi|206578751|ref|YP_002236967.1| alanyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|206567809|gb|ACI09585.1| alanyl-tRNA synthetase [Klebsiella pneumoniae 342]
          Length = 875

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI +  +VTG         + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATD--LTNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIAVMGSAGEELKQQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++    GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK       H   V  G L+   ++   +D   R+++ +NHSATH
Sbjct: 510 GELKGAGFSFAVSDTQKYG-QAIGHIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLQM-----GDFSTELCGGTHAARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIAMLHAQSDQLSDIAQLLKGDSHNLGEKVRAALERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S +++
Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|163852018|ref|YP_001640061.1| alanyl-tRNA synthetase [Methylobacterium extorquens PA1]
 gi|205830139|sp|A9W5Y4|SYA_METEP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|163663623|gb|ABY30990.1| alanyl-tRNA synthetase [Methylobacterium extorquens PA1]
          Length = 891

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/896 (49%), Positives = 585/896 (65%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +DEEA  LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG P    E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E +   ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL +++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG  G+D  +F+
Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTKAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+  ARA   G G   TE +WF +KE+ GAT+F+GYD                  
Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    +++ A+++ G  VE   +G+   VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 462 -----TEAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++T  +KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KARVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+                  S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A  + ++ +   S       +I  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + LVG+S + KA +++ VTEDL  R++AV+L R  A  LGG GGGGR  MAQ+GGP
Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTGRYDAVELVRAGAGHLGGKGGGGRRDMAQAGGP 872


>gi|163746280|ref|ZP_02153638.1| alanyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
 gi|161380165|gb|EDQ04576.1| alanyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
          Length = 885

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/892 (49%), Positives = 563/892 (63%), Gaps = 39/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F   GH+++PSS L+P NDPTLMFT +GMV FKN+FTG E   Y  
Sbjct: 1   MKTLNEIRSTFLNYFDAQGHQVVPSSPLVPRNDPTLMFTAAGMVQFKNLFTGVETRNYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AWDLLTKEF +
Sbjct: 61  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWDLLTKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TVY  DEEA K+WK  +GL  ++IIRI T+DNFWS   TGPCGPC+EIF+D G
Sbjct: 121 DPNRLLVTVYHTDEEAVKIWKAHTGLPDERIIRIATDDNFWSAGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTREPLPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   +    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 TNDNYATDLMRSLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P+L  +MG+AYPEL QA+ LI ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGVKDPLMHQLVPSLVQQMGAAYPELGQAQSLIRETLLLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L +   L G+ AFKLYDT G PLD+ QD L  +G   +D   FN
Sbjct: 361 QTLDRGLKLLDDELHGLPEGATLPGEAAFKLYDTFGFPLDLTQDALREKGR-AVDTDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++ARA   G G      +WF + +K G T+F+GYD                  
Sbjct: 420 TAMEAQKAKARAAWAGSGEAADATVWFDVADKSGVTEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+VQ  + VE A +G  V+V  +QTPFYAE+GGQ+GDTG       
Sbjct: 462 -----TESAEGQIVALVQGSDKVEAASAGSDVQVALNQTPFYAESGGQVGDTGVIRTQTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +TD  +K+ G+FVH   V  G ++   S VL +D   R  +  NHSATHLLH AL  
Sbjct: 517 IVNVTDT-RKSAGVFVHFGHVIEGEVKPGQSAVLEVDRARRSAIRANHSATHLLHEALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HVSQ GS    D LRFD +H+K +T  EL  +E  VND + QN PV TRIM  +DA
Sbjct: 576 ALGDHVSQRGSLNAHDRLRFDFSHAKGLTPEELTQVEREVNDYVRQNTPVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          +   +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 RAMGAQALFGEKYGDEVRVVSMGQLEGSGKGSNKSTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  +G+RRIEA+TG  A + L  Q+  L  +A+ LK S  +V  RV  + +E R L  
Sbjct: 696 DSASSSGVRRIEALTGTEALAWLRDQEAALSRVAAELKTSTADVPDRVRALLDERRSLSN 755

Query: 773 IHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A+ + +L             ++  V F+  ++S V  K+L  ++D  + KI SG ++L
Sbjct: 756 EVAQLRRELAMSGGSAAAPEAREVNGVKFVGQVLSGVTGKDLPGLVDEHKAKIGSGAVLL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +      KA+V   VT+DL DR +AVD+ + +   LGG GGGGRP MAQ GG
Sbjct: 816 IA-DTGGKAAVAGGVTKDLTDRLSAVDMVKAAVAELGGKGGGGRPDMAQGGG 866


>gi|261854984|ref|YP_003262267.1| alanyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
 gi|261835453|gb|ACX95220.1| alanyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
          Length = 872

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/909 (42%), Positives = 539/909 (59%), Gaps = 52/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +RT FLEFF + GHE++PSSSLIP +DPTL+FTN+GMV FK+ F G E      
Sbjct: 2   MKTTAELRTAFLEFFNQRGHEIVPSSSLIPAHDPTLLFTNAGMVQFKDAFLGLEHRANPR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+  WD LT+   L
Sbjct: 62  AVSCQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPEAIRYGWDFLTQVLKL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-----DNFWSMAETGPCGPCSEI 175
              RL +TVY  D+EA+ +W+   GL  +K++RI        DNFW M +TGPCGPC+EI
Sbjct: 122 PADRLLVTVYQTDDEAYAIWRDEIGLPEEKVLRIGDKPSGGSDNFWQMGDTGPCGPCTEI 181

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  IPGG PGS  E+G+R+IEIWN+VFMQ+++    +   LPK S+DTGMG+ER+A
Sbjct: 182 FYDHGAHIPGGPPGSADEDGDRFIEIWNIVFMQYDRTVDGQLHPLPKPSVDTGMGIERLA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NYDID+F+HLI A++ VTG         + +V+ DH+RS +FLI DG+ P N
Sbjct: 242 AILQGGHSNYDIDIFRHLITAAQAVTGAAD--QKSSSLKVLADHIRSCAFLIVDGVRPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGR YVLRRI+RRA  +   LG  EP    L+  L   MG AY EL  A+  +   LR E
Sbjct: 300 EGRDYVLRRIIRRAARHGHKLGVDEPFFYRLVAPLVEVMGPAYSELANAQAEVARVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +L+  L+ +     + G+V FKLYDTHG P D+  DI   RGL  +D
Sbjct: 360 EERFLQTLASGMQVLETELADMTPGGTIPGEVVFKLYDTHGFPFDLTADIARERGL-VLD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ E+R+++RA S              + E    T F GY              
Sbjct: 419 ESGFEHAMAERRAQSRAASQFAQQTH-------VLEIETPTCFEGY-------------- 457

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      +     + AIV  GE ++   +GQ   +V D TPFYAE+GGQ+GDTG  
Sbjct: 458 ---------AQDKAQGALIAIVHDGEQIDVLEAGQSGALVLDHTPFYAESGGQVGDTGVI 508

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  +TD QK+    F+H   V  G +         ID + R  + +NHSATHLLH
Sbjct: 509 TTAGGRFVVTDTQKQGAN-FLHLGEVIEGRVALGDVADAQIDVERRHSIRLNHSATHLLH 567

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  + LRFD + S+PIT A+L+ IE  VN  I +N  V TR M
Sbjct: 568 AALRQVLGTHVHQKGSRVGAESLRFDFSQSEPITDAQLREIERIVNAQIRENHSVETREM 627

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A A+GA AL G KY D VRVV++     G  S  LCGGTH    G+I L+ IVSES
Sbjct: 628 PVDEARAAGAMALFGEKYGDVVRVVTM-----GPFSMELCGGTHARRGGDIGLIKIVSES 682

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TG  A + L   D+ L  +AS ++ S+ + V RV ++ E  R+L+   
Sbjct: 683 GVASGVRRIEAVTGASALAVLEQTDDALAEIASMVRGSRQDAVSRVSQVIERARQLEREL 742

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +   E       +   + DVN++   + + D   L+  +D L+ K+ +  +ML  
Sbjct: 743 AEIKAKQAAEAGGDLLTTAVAMGDVNYLVAELPDADVNTLRDTVDQLKNKLGTSAVMLAS 802

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + ++ K  ++  V++DL  R  A D   ++A+++ GG GGGRP MAQ+GGP+  +   A+
Sbjct: 803 V-EDGKVRLIAGVSKDLTGRIKAGDWVNVAAQIV-GGKGGGRPDMAQAGGPDSAQLPAAM 860

Query: 890 AGVASFLKK 898
               +++KK
Sbjct: 861 EAARAWMKK 869


>gi|326569365|gb|EGE19425.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC8]
          Length = 893

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/922 (40%), Positives = 520/922 (56%), Gaps = 56/922 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y
Sbjct: 1   MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
               + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K
Sbjct: 61  VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169
              L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPC
Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180

Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EIF+D GE I GGLP    E+G+RYIEIWN VFMQF +Q       LPK S+DTGM
Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GLER++ ++Q    NY+ D+F  L+  +  +       +  N  + +V+ DH+RS +FLI
Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  
Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE+ +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+ 
Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  ID   F  ++ EQR+RAR              + +L +   AT+F+GY+ L   
Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  + Q G+ V+    G +  ++ D+TPFYAE+GG
Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+G+ G    +     + D QK  + I   H +V+ G +    S    +  Q R   + N
Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N
Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704
            P    I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+
Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  IVSE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ 
Sbjct: 690 IGLFKIVSEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R L+    +   +      +        I     +   ++ +D+K L+++ D ++ K
Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809

Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ
Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKYLSENL-GGKGGGKPDFAQ 868

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            G  +     + + G+  ++ +
Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890


>gi|153835573|ref|ZP_01988240.1| alanyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|148867838|gb|EDL67069.1| alanyl-tRNA synthetase [Vibrio harveyi HY01]
          Length = 860

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 537/911 (58%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G       
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTGTKG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           SS V A+  +G  VE   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------SSSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTESGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  DGLRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +               ++ E  ++ + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDAIEAQTAKYEE--------------KLAESAQKAKSLEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   +          I     +   +   D+K L++++D ++ ++ SG+I+L
Sbjct: 730 EIQKLKDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVILL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +      
Sbjct: 790 ANV-NDDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPA 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIQTVQPWLEE 858


>gi|146278407|ref|YP_001168566.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|205830189|sp|A4WV47|SYA_RHOS5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145556648|gb|ABP71261.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
          Length = 883

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/889 (50%), Positives = 579/889 (65%), Gaps = 37/889 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT++FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELLTRDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  +WKK++GL  D+IIRI TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 121 PREKLLVTVYHTDDEAASIWKKVAGLPDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGTGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL + + LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LL+  L  L +   L G+ AFKLYDT+G PLD+ QD L  +G   +D+  F 
Sbjct: 361 QTLDRGLRLLEDELDRLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF L E++GAT+F+GYD                  
Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAERHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + AIV  G     A  GQ V+++ +QTPFYAE+GGQ+GDTG    D  
Sbjct: 462 -----TEKAEGQILAIVAGGVDTASATPGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R +ITDV +K +G+F+H A V  G +R      L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RARITDV-RKGQGLFLHFAEVTEGEIRPGQGAALEVDHARRSAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +HSK +++ EL ++E  VN  I  N  V TRIM+ +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSKALSAEELATVEAEVNQFIRSNGMVETRIMSPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHV+  G+I L  I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGMDGQTYSLELCGGTHVARLGDIGLCVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TG+ A +HL  Q ++L  +A+ LK S   +V RV+ + EE R+LQ 
Sbjct: 696 DSASSAGVRRIEALTGEGALAHLNEQMQRLAEVAATLKASPAEMVDRVKALVEERRQLQN 755

Query: 773 IHAKRK---LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+ +               I  V F++ I+  V  K++  ++D ++ ++ SG ++L+ 
Sbjct: 756 EVAQLRREAAMGGGAAAEAKDIGGVKFLAQIVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                KA++   VT DL DR +AV L + +A+ LGG GGGGRP MAQ+G
Sbjct: 816 -DTAGKAALAAGVTPDLTDRLSAVALVKAAAEALGGRGGGGRPDMAQAG 863


>gi|170743900|ref|YP_001772555.1| alanyl-tRNA synthetase [Methylobacterium sp. 4-46]
 gi|205830146|sp|B0UGC4|SYA_METS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|168198174|gb|ACA20121.1| alanyl-tRNA synthetase [Methylobacterium sp. 4-46]
          Length = 886

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/892 (50%), Positives = 604/892 (67%), Gaps = 35/892 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFAKHGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW+L+TKEF L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWNLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY +D++A  LW+KI+G   ++IIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 DRSKLLVTVYADDDDAATLWRKIAGFPEERIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PELWGGPPGSPEEDGDRFLEFWNLVFMQYEQIEPGNRVGLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A     G   EG    ++RVI DHLR++SFL+ADG+LP NEGRGY
Sbjct: 241 VKSNYDTDLFRSLIDAVAHQVGRPPEGAQTASYRVIADHLRAASFLVADGVLPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +P+M  L+P L  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGARDPMMYRLVPTLVREMGQAYPELVRAESLISETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +LD     L + + L+G+ AF LYDT+G PLD+ QD L +RG  G+D  +F 
Sbjct: 361 RTLERGLSILDAETRDLSEGQNLSGETAFTLYDTYGFPLDLTQDALKSRG-IGVDTDAFK 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ ARA   G G   TE +W++L+E+ GAT+F+GY+                  
Sbjct: 420 AAMERQRAAARAAWAGSGEAATETLWYALRERVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G  VE   SG++  +V  QTPFY E+GGQ+GDTG     G+
Sbjct: 462 -----AETAEGVVTALVRGGVEVEALASGEEGLLVVSQTPFYGESGGQVGDTGTVAAAGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD +KK   +FVHH  VE G L    ++ L +D+  R  +  +HSATHLLH AL  
Sbjct: 517 RARVTDTEKKLGDLFVHHVAVEEGRLTVGQAVELRVDHARRAAIRAHHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD +H KP+   E+ ++E+  N ++ QN PVVT++M  +DA
Sbjct: 577 VLGDHVAQKGSLVSPERLRFDFSHPKPMNDDEVAAVEEMANRVLLQNGPVVTKLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA+GA AL G KY D VRVVS+  + GG       S  LCGGTHV  TGEI L+ +V E 
Sbjct: 637 IATGARALFGEKYGDEVRVVSMGEDQGGDGRRRTFSVELCGGTHVGRTGEIGLITVVGEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ +G+RRIEA+TG  AR HL  +  +L ++A  LKV       R+  + E+ R+L+   
Sbjct: 697 AVASGVRRIEAMTGDAARRHLAEESRRLAAVAGLLKVPPAEAADRLAALIEDRRRLEREL 756

Query: 775 AKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ + +L +      +    ++A V  M+  +  V+ ++LKS+ D  +K++ SG++ +VG
Sbjct: 757 SEARRKLAMGGGGAGEEPVREVAGVKLMARSVEGVEMRDLKSLADEGKKRLGSGVVAIVG 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           ++ + KA +++ VT+DL DRF+AV L R  ++ LGG GGGGR  MAQ+GGP+
Sbjct: 817 VAPDGKAGLVVGVTDDLTDRFDAVALVRAGSERLGGKGGGGRRDMAQAGGPD 868


>gi|148978178|ref|ZP_01814708.1| alanyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145962600|gb|EDK27876.1| alanyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 860

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/911 (41%), Positives = 534/911 (58%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +   + YE  +  + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAE--TIGYEDLSNQSLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR RAR        G     + +  +    T+F GY    G+      
Sbjct: 419 IDEAGFEKAMEVQRQRAREA------GQFGTDYNATIKVETNTEFCGYTGTEGA------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              + A+  +GE V    +G K  ++ ++TPFYAE+GGQ GDTG
Sbjct: 467 -----------------GEISALFVEGEEVASLSAGDKAIIILEETPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK     F HH  +  G+      +  T+D + R  +S+NHSATHL
Sbjct: 510 TLKTASGLFKVEDTQKLGN-AFAHHGELVEGVFAKGDKVEATVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD ++ + +T A++K +E  VN  + +N  + T 
Sbjct: 569 LHAALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q    +               ++ E  ++ + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQANAYEE--------------KLAESAKKAKALEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K ++   +         +I+    +   I   D+K L++++D  + ++ SGII L
Sbjct: 730 EIQLLKEKMAAAESANIMGKVEEISGTKVLVAAIEGADNKNLRTMVDNAKNQVGSGII-L 788

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +    + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     +
Sbjct: 789 IANVADGKVGLIAGVTKDLIGKVKAGDLVKMVAEQI-GGKGGGRPDMAQAGGTDVEALPE 847

Query: 888 AIAGVASFLKK 898
           A+  V ++L++
Sbjct: 848 ALKSVRTWLEE 858


>gi|118581577|ref|YP_902827.1| alanyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|205830173|sp|A1ATU9|SYA_PELPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118504287|gb|ABL00770.1| alanyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
          Length = 878

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/892 (42%), Positives = 538/892 (60%), Gaps = 42/892 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF + GH ++PSS +IP NDPTLMF N+GM  FK+ F G EK  Y   
Sbjct: 1   MTGSEIRRRFLTFFAERGHTIVPSSGIIPKNDPTLMFANAGMNQFKDCFLGMEKRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT++  LD
Sbjct: 61  CSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTRDLKLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY++VY +D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPCSEIF+DQGE
Sbjct: 121 KNRLYVSVYTDDQEAADIWHQQEGVPLERIFRFGEKDNFWSMGDTGPCGPCSEIFYDQGE 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWN VFMQF++        LPK S+DTGMGLER++ V+Q 
Sbjct: 181 AAGCGSPDCTVGCDCDRYMEIWNNVFMQFDRSTDGVLTPLPKPSVDTGMGLERISAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DL + +I+  E+++G  Y  +  + V+ RVI DH R+ +FLI DG LP+NEGR
Sbjct: 241 VTSNYDTDLIQGIIRHVERLSGKTYGKDERDDVSMRVIADHARAVTFLICDGALPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG  +P++ H++ A+   MG+AYPEL++ +  I++ + +E++R
Sbjct: 301 GYVLRRIMRRAARHAKMLGLADPMLCHMVDAVRDMMGAAYPELVEREEYIKKVILAEEQR 360

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+  ++ +      ++ GDV F+LYDT+G P+D+  DI+ + G   ID 
Sbjct: 361 FAETLDRGLAMLNDEVARMRAAGSTVIPGDVLFRLYDTYGFPIDLTADIVESEGFT-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F Q +E QR +AR H  G G+    +++  L  +    +F+GYD L            
Sbjct: 420 AGFEQCMERQREQAREHWKGSGAEGIGRVYKELYSRGIRGEFVGYDGLSAL--------- 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V AI++ G  VE A +G+ +E+V + TPFY E+GGQ GD G   
Sbjct: 471 --------------SPVLAIIRDGVEVESATAGETIELVTESTPFYGESGGQKGDCGSIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                L+++   +    + VHHA V  GI+R      L +    R   + NH+ATHLL  
Sbjct: 517 TGNSHLEVSGASRPYSDLIVHHATVREGIIRKGDGADLRVSRPERSATARNHTATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS ++PD LRFD  H   +T+ E++ +E  VN  +  N PVV   M+
Sbjct: 577 ALRRVLGEHVKQAGSLVSPDRLRFDFIHFTAMTTEEIRRVETLVNGFVMDNQPVVITQMD 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              AI +GA AL   KY D VRVV       G  S  LCGGTHV +TGEI L  I++E+ 
Sbjct: 637 MASAIEAGATALFDEKYGDNVRVVR-----AGEVSMELCGGTHVRATGEIGLFKIITETG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA TG  A S +   +++ ++LA  LK   GN+  R+E++    R++Q    
Sbjct: 692 IAAGVRRIEAQTGGGALSFVRQMEDEQRALAGLLKAEGGNLPERLEKLLARQREMQREIE 751

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN            ++  +  ++  +   D K L+ + D L+++I  G+I+L G 
Sbjct: 752 SLQGKLNAAASGDLLSGVEEVGGIKLLAAEVRVEDVKALRDLSDTLKERIGQGVIVL-GA 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +   KA++L+ VT +L     A DL +  A ++ GG GGG+P +AQ+GG   
Sbjct: 811 AIGGKANLLVAVTRELSGTVKAGDLVKKLAPLV-GGSGGGKPELAQAGGSRP 861


>gi|126175316|ref|YP_001051465.1| alanyl-tRNA synthetase [Shewanella baltica OS155]
 gi|205830201|sp|A3D783|SYA_SHEB5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|125998521|gb|ABN62596.1| alanyl-tRNA synthetase [Shewanella baltica OS155]
          Length = 874

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/909 (42%), Positives = 553/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSD--LTEKSLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L     L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDTALNELK-GTTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFSGYTELAG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + + AI Q GE V    +G +  VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKITAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  G+   + D QK  +       ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VASGVEFTVNDTQKYGQATGHQ-GVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN  I +N  + T  M
Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L     +        +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|316932874|ref|YP_004107856.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315600588|gb|ADU43123.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 890

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/900 (50%), Positives = 610/900 (67%), Gaps = 40/900 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWELITRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 NKHQLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG P    E+G+R++E WNLVFMQ++Q  K ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI A+    G      +  + RVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VDSVFDTDLFRSLIDATASALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG +EPLM  L+ AL  EMG AYPEL++A+ +IEET+R E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L  RG   +DI SF 
Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRG-INVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WFSL+EK+GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKFGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G  V+   +G    +V +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 462 -----TETAEGVVMALVKDGTEVDALKAGDAAAIVMNQTPFYAESGGQVGDTGVLAADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +T+  KKA  +FVH   VE+G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFVVTETLKKAGDLFVHFGTVEQGTIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  VVTR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ I +E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAAREHGSNALGWSVELCGGTHVKRTGDIGLVSITAE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG+ AR +        K+ A+ L+ +  ++  R+  + +E +KL+  
Sbjct: 697 SAVASGVRRIEALTGRAARHNANAAISTAKTAAAELRTTLDDMPARIAALMDERKKLERE 756

Query: 774 HAKRKLQLN---------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            ++ + +L                 +I  V  M+  +  ++ K+LK ++D  +K+I SG+
Sbjct: 757 LSEARKKLAMGGSASGDGAAASDVREIGGVKLMARTVQGIEIKDLKGLVDQGKKQIGSGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I LV  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K
Sbjct: 817 IALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 876


>gi|160876373|ref|YP_001555689.1| alanyl-tRNA synthetase [Shewanella baltica OS195]
 gi|205830203|sp|A9KYF8|SYA_SHEB9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160861895|gb|ABX50429.1| alanyl-tRNA synthetase [Shewanella baltica OS195]
 gi|315268563|gb|ADT95416.1| alanyl-tRNA synthetase [Shewanella baltica OS678]
          Length = 874

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/909 (42%), Positives = 554/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSD--LTEKSLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALNELK-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFSGYTELAG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +G+   + D QK  +       ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGVEFTVNDTQKYGQATGHQ-GVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN  I +N  + T  M
Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKATELKEVEELVNTQIRRNHELKTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L     +        +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|304410155|ref|ZP_07391774.1| alanyl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302134|ref|ZP_07581892.1| alanyl-tRNA synthetase [Shewanella baltica BA175]
 gi|304351564|gb|EFM15963.1| alanyl-tRNA synthetase [Shewanella baltica OS183]
 gi|306914172|gb|EFN44593.1| alanyl-tRNA synthetase [Shewanella baltica BA175]
          Length = 874

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/909 (42%), Positives = 554/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSD--LTEKSLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALNELK-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFSGYTELAG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  G+   + D QK  +       ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VASGVEFTVNDTQKYGQATGHQ-GVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN  I +N  + T  M
Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L     +        +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAIVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|326576631|gb|EGE26538.1| alanyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
          Length = 893

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/922 (40%), Positives = 520/922 (56%), Gaps = 56/922 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y
Sbjct: 1   MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
               + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K
Sbjct: 61  VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169
              L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPC
Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180

Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EIF+D GE I GGLP    E+G+RYIEIWN VFMQF +Q       LPK S+DTGM
Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GLER++ ++Q    NY+ D+F  L+  +  +       +  N  + +V+ DH+RS +FLI
Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  
Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE+ +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+ 
Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  ID   F  ++ EQR+RAR              + +L +   AT+F+GY+ L   
Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  + Q G+ V+    G +  ++ D+TPFYAE+GG
Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+G+ G    +     + D QK  + I   H +V+ G +    S    +  Q R   + N
Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N
Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704
            P    I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+
Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ 
Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R L+    +   +      +        I     +   ++ +D+K L+++ D ++ K
Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809

Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  GI++L  I     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ
Sbjct: 810 LADGIVILASIYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQ 868

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            G  +     + + G+  ++ +
Sbjct: 869 GGATDVANLPKLMTGLIDWIGE 890


>gi|296112817|ref|YP_003626755.1| alanyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295920511|gb|ADG60862.1| alanyl-tRNA synthetase [Moraxella catarrhalis RH4]
          Length = 893

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/922 (39%), Positives = 519/922 (56%), Gaps = 56/922 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y
Sbjct: 1   MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
               + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K
Sbjct: 61  VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169
              L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPC
Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180

Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EIF+D GE I GGLP    E+G+RYIEIWN VFMQF +Q       LPK S+DTGM
Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GLER++ ++Q    NY+ D+F  L+  +  +       +  N  + +V+ DH+RS +FLI
Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  
Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE+ +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+ 
Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  ID   F  ++ EQR+RAR              + +L +   AT+F+GY+ L   
Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  + Q G+ V+    G +  ++ D+TPFYAE+GG
Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+G+ G    +     + D QK  + I   H +V+ G +    S    +  Q R   + N
Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N
Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSGDLLRFDFSYDKPLTEQNINQIETMVNQQILAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704
            P    I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+
Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SE  I AG+RRIEA+TG  A  ++   D++L  LA+  K  +  +  RV ++ 
Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R L+    +   +      +        I     +   ++ +D+K L+++ D ++ K
Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809

Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ
Sbjct: 810 LADGIVILASVYTADGEDKITMTASVGKHLTSKIKAGDIIKHLSENL-GGKGGGKPDFAQ 868

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            G  +     + + G+  ++ +
Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890


>gi|296104368|ref|YP_003614514.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058827|gb|ADF63565.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 875

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF  LI+A  +VTG      N  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFSTLIKAVAEVTGATD--LNNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++     A++F GY+ L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDSASEFKGYEALE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ   V+ D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LTGKVTALFVDGKAVDSISAGQDAVVILDKTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+G    + D QK       H   +  G L+    +   +D   R ++ +NHSATH
Sbjct: 510 GELQGNGFSFSVNDTQKYG-QAIGHLGKLVSGSLKVGEGVQANVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +  +E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A   GA AL G KY+DRVRV+S+     G  S+ LCGGTH S TG+I L  IV
Sbjct: 629 HIMDLDAAKKKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    +  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIASLHAQSDQLHDIAQLLKGDTQNLGEKVRVALDRTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDIKGVKLLVSDLAGVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|262149022|ref|ZP_06028166.1| alanyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|262031167|gb|EEY49787.1| alanyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
          Length = 873

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/899 (43%), Positives = 538/899 (59%), Gaps = 69/899 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG       
Sbjct: 419 IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 466 ----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK       HH ++ +G+L T   +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGIFHVEDTQKLGN-AIAHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T 
Sbjct: 569 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+S
Sbjct: 629 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  +L  Q                    +V E+  + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEK 729

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 730 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +   
Sbjct: 790 GNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALP 846


>gi|83944501|ref|ZP_00956954.1| alanyl-tRNA synthetase [Sulfitobacter sp. EE-36]
 gi|83844703|gb|EAP82587.1| alanyl-tRNA synthetase [Sulfitobacter sp. EE-36]
          Length = 886

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/896 (47%), Positives = 561/896 (62%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+K GH + PSS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MKTLNDIRSTFLGYFEKQGHSIQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  +W+L+TKE  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLY+TVY  D+EA ++WKK++GL  D+IIRI T+DNFW M  TGPCGPCSEIF+D G
Sbjct: 121 DPNRLYVTVYHTDDEAAEIWKKVAGLPDDRIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRTALPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL ++LI+AS   +    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLMRNLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL QA+ LI ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGLKDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L     L G+ AFKLYDT+G P+D+ QD L  +    +D+  FN
Sbjct: 361 QTLDRGLKLLDDELKGLPAGADLPGEAAFKLYDTYGFPVDLTQDALREQDRK-VDLEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+++ARA   G G      IWF + EK G T F+GYD                  
Sbjct: 420 AAMDAQKAKARAAWSGSGEAADATIWFDVAEKSGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A++Q G  V E   G  V++  +QTPFYAE+GGQ+GDTG    D  
Sbjct: 462 -----TETAEGQIVALIQDGAQVAEVKQGDAVQIALNQTPFYAESGGQVGDTGTIKTDSG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +TD +K A  +F+H   V  G ++T  + VL +D+  R  +  NHSATHLL+ AL  
Sbjct: 517 VVTVTDTRKTAG-VFIHIGEVTEGTVKTSQAAVLDVDHARRTSIRANHSATHLLNEALRK 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS    D LRFD +H+ P+T+ +L ++E+ VN  I QN  V TRIM  +DA
Sbjct: 576 TLGDHVMQRGSLNAADRLRFDYSHNHPMTADQLAAVEEEVNSYIRQNTAVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+          D   +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 REMGAQALFGEKYGDEVRVVSMGREAGSGKGADKQTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +SS  +GIRRIEA+TG  A   L  Q+  L  +A+ LK S  +V  RV  + +E R L  
Sbjct: 696 DSSSSSGIRRIEALTGTEALKWLRTQETALTRVAAELKTSTADVPDRVRALLDERRALAN 755

Query: 773 IHAKRKLQLN------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             A+ + +L           +  ++  + F++ +++ V  K+L +++D  + K+ SG ++
Sbjct: 756 EVAQLRRELAMSGGGDASAAAPREVNGIKFIAQVVNGVTGKDLPALIDEHKAKLGSGAVL 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L+    + KA+V   VT DL    +AVD+ +     LGG GGGGRP MAQ G  + 
Sbjct: 816 LIA-DADGKAAVAAGVTADLAATISAVDIVKTVVAELGGKGGGGRPEMAQGGAKDV 870


>gi|217972432|ref|YP_002357183.1| alanyl-tRNA synthetase [Shewanella baltica OS223]
 gi|217497567|gb|ACK45760.1| alanyl-tRNA synthetase [Shewanella baltica OS223]
          Length = 874

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/909 (42%), Positives = 555/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSD--LTEKSLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALNELK-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFSGYTELAG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + + AI Q GE V    +G +  VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKITAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +G+   + D QK  +       ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGVEFTVNDTQKYGQATGHQ-GVLATGSLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN  I +N  + T  M
Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L     +        +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAIVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|323492975|ref|ZP_08098113.1| alanyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323312806|gb|EGA65932.1| alanyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 860

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/911 (41%), Positives = 539/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF++W K  G+ AD+I+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFEIWNKTVGVPADRIVRIGDKEGGKQYESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +   + YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKAAAE--TIGYEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGVFFHKLVGVLAEVMGTAGEELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVARERDF-A 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G       
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNATIKTEAETEFCGYTGTQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S V  I  +GE  E   +G K  ++  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------NSNVAEIFVEGEAAESLSAGDKAIIILGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFKVEDTQKLGN-AIAHHGVLAEGVLAKGDEVEAVVDAERRASISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL T+LG HV+Q GS + P+ LRFD +H + +T AELK +E  VN  + +N  + T 
Sbjct: 569 LHAALRTVLGEHVTQKGSLVKPENLRFDFSHLEAVTPAELKEVERLVNAQVRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +               ++ E   + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEAQQAKYEE--------------KLAESATKAKSLEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   +         +I  V  +   +   DSK L++++D ++ ++ SG++ML
Sbjct: 730 EIQKLKDKMAAAESANIMGKAQEINGVKVLIAGMEGADSKNLRTMVDDIKNQMGSGVVML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + +    
Sbjct: 790 ANV-NDGKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVDALPA 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIQSVQPWLEE 858


>gi|326565354|gb|EGE15532.1| alanyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 893

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/922 (39%), Positives = 520/922 (56%), Gaps = 56/922 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y
Sbjct: 1   MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
               + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K
Sbjct: 61  VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169
              L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPC
Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180

Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EIF+D GE I GGLP    E+G+RYIEIWN VFMQF +Q       LPK S+DTGM
Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GLER++ ++Q    NY+ D+F  L+  +  +       +  N  + +V+ DH+RS +FLI
Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  
Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE+ +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+ 
Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  ID   F  ++ EQR+RAR              + +L +   AT+F+GY+ L   
Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  + Q G+ V+    G +  ++ D+TPFYAE+GG
Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+G+ G    +     + D QK  + I   H +V+ G +    S    +  Q R   + N
Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N
Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704
            P    I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+
Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ 
Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R L+    +   +      +        I     +   ++ +D+K L+++ D ++ K
Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809

Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  GI++L  I     E K ++   V + L  +  A ++ +  ++ L GG GGG+P  AQ
Sbjct: 810 LADGIVILASIYTADGEDKIAMTASVGKHLTGKIKAGNIIKHLSENL-GGKGGGKPDFAQ 868

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            G  +     + + G+  ++ +
Sbjct: 869 GGATDVANLPKLMTGLTDWIGE 890


>gi|269960382|ref|ZP_06174755.1| alanyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|269834809|gb|EEZ88895.1| alanyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 860

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/911 (41%), Positives = 534/911 (58%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTVTLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W +  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G       
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTGTKG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           SS V A+  +G  VE   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------SSSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTEAGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKADSLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +               ++ E  ++ + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDAIEAQAAKYEE--------------KLAESAQKAKSLEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   +          I     +   +   D+K L++++D ++ ++ SG+I+L
Sbjct: 730 EIQKLKDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVILL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +      
Sbjct: 790 ANV-NDDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPA 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIQSVQPWLEE 858


>gi|325916030|ref|ZP_08178320.1| alanyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537706|gb|EGD09412.1| alanyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937]
          Length = 882

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/909 (42%), Positives = 535/909 (58%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FFQ  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFQGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTEVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+        + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASGLTGVTD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVLARDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V +     E++ G  AF+L+DT+G P+D+  DI   RGL  +D
Sbjct: 366 EERFAETLDAGMKIFDDVAAR--SQEVIPGADAFRLFDTYGFPVDLTSDIARERGLR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA       G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVERAQAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + ++I D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGSDVSIEIVDTQKFAGQFHGHVGRITEGALALGDVLAGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PI++ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNAEVRTNHSVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +       +S+ LCGGTHVS TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGEHVRVLKMGG-----YSTELCGGTHVSRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   AS L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLFEAASLLGGNTTEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 ASA-GKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGAALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 DGVPSWVKQ 879


>gi|288933924|ref|YP_003437983.1| alanyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|290510997|ref|ZP_06550366.1| alanyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|288888653|gb|ADC56971.1| alanyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|289775990|gb|EFD83989.1| alanyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 875

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/910 (43%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI +  +VTG         + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATD--LTNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIAVMGSAGEELKQQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++    G ++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGVSEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK       H   V  G L+   ++   +D   R+++ +NHSATH
Sbjct: 510 GELKGAGFSFAVSDTQKYG-QAIGHIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLQM-----GDFSTELCGGTHAARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIAMLHAQSDQLSDIAQLLKGDSHNLGEKVRAALERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S +++
Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|261342139|ref|ZP_05969997.1| alanine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288315472|gb|EFC54410.1| alanine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 875

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 562/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAFDIWEKEVGIPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF  LI+A  +VTG      N  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFSTLIKAVAEVTGATD--LNNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++     A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDSASEFKGYDALE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LTGNVTALFVDGKAVDSISAGQEAVVILDKTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+G    ++D QK       H   +  G L+    +   +D   R ++ +NHSATH
Sbjct: 510 GELKGNGFSFSVSDTQKYG-QAIGHQGKLVSGSLKVGEGVQANVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +  +E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A   GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKNKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    +  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEAAIASLHAQSDQLHDIAQLLKGDSQNLGEKVRVALDRTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESASLSSKAVDIKGVKLLVSELAGVEPKMLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDSAALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|253997271|ref|YP_003049335.1| alanyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253983950|gb|ACT48808.1| alanyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 878

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/907 (41%), Positives = 524/907 (57%), Gaps = 56/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GHE++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 10  SSNEIRQAFLDFFASKGHEIVSSSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+LLT+ F L +
Sbjct: 70  SSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIKYAWELLTEVFKLPK 129

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY ED+EA+ +W  I G+ A++IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 130 DKLTVTVYAEDDEAYAIWNNIIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTEI 189

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G    GG P    E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER++
Sbjct: 190 FYDHGAHHFGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERIS 249

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ    NY+IDLF+ LI A+ +    K    +I + +V+ DH+R+ SFLIADG++  N
Sbjct: 250 AVLQHVHANYEIDLFQTLIAAAAR--ETKTADLSIPSLKVLADHIRACSFLIADGVIAGN 307

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        ++P L  EMG AYPEL+  +  I E L+ E
Sbjct: 308 EGRGYVLRRIIRRAIRHGYKLGVRSAFFHKIVPDLVAEMGDAYPELVSNQARITEILKQE 367

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ++RF +T++ G+ +L+  L+     ++ NG+ AFKL+DT+G PLD+  DI   R    +D
Sbjct: 368 EDRFFETIENGMAILESELAST--KDVFNGETAFKLHDTYGFPLDLTADICRERN-VAVD 424

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +FN A+  Q+ +ARA      +        +L+    AT F GYD L           
Sbjct: 425 TDAFNAAMARQKEQARAAGKFKMTA-------NLEYDGVATNFHGYDKLE---------- 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ V A+ + G  V +   G+   VV D TPFYAE+GGQ+GD G  
Sbjct: 468 -------------TSATVTALYKDGVAVTKLTEGEVGVVVLDNTPFYAESGGQIGDCGEL 514

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G     +  D QK    +F HH +++ G L     +   ++ Q R     NHSATHL+H
Sbjct: 515 RGTNGIFEAEDTQKIQATVFGHHGVLKTGTLSVGEQVSARVNTQARTNTMRNHSATHLMH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  D  RFD  H+ P+T  E+  +E  VN  I  N     R+M
Sbjct: 575 KALREVLGEHVQQKGSLVDTDKTRFDFVHTAPMTDDEIAKVEQIVNAEILANAACQARVM 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY D VRV+ +        S  LCGGTHV+ TG+I L  I SES
Sbjct: 635 DIESAQNTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVNRTGDIGLFKITSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RR+EA TG+ A   +  Q   + +LA+ LK     +  +V ++ +  + L+   
Sbjct: 689 GVAAGVRRVEATTGEGALKLINAQQTLISALANDLKAPVNELASKVAQLSDHAKSLEKEL 748

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L             +IA V  ++  +   D+  L+  MD L+ K++S  I+L  
Sbjct: 749 ARLKSKLASSQGDDLATQAVEIAGVKVLAATLDGADANALRETMDKLKDKLKSAAIVLAS 808

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +S + K S+   VT DL  +  A +L    A  +GG G GG+P MA +GG + ++  QA+
Sbjct: 809 VS-DGKVSLAAGVTADLTSKVKAGELVNFVAGQVGGKG-GGKPDMAMAGGSDASQLPQAL 866

Query: 890 AGVASFL 896
           A V  ++
Sbjct: 867 ASVNDWV 873


>gi|238896148|ref|YP_002920884.1| alanyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548466|dbj|BAH64817.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 875

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI +  +VTG         + RVI DH+RS +FL+ADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATD--LTNKSLRVIADHIRSCAFLVADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++    GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK       H   V  G L+   ++   +D   R+++ +NHSATH
Sbjct: 510 GELKGAGFSFAVSDTQKYG-QAIGHIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S I++
Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|156975767|ref|YP_001446674.1| alanyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|205830285|sp|A7MYT5|SYA_VIBHB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|156527361|gb|ABU72447.1| hypothetical protein VIBHAR_03511 [Vibrio harveyi ATCC BAA-1116]
          Length = 865

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/915 (41%), Positives = 537/915 (58%), Gaps = 72/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            E+E FG+TL+RG+ +L+  L ++       ++L+G+  FKLYDT+G P D+  D+   R
Sbjct: 361 IEEENFGRTLERGMAILNEALDNISSQGTDGKVLDGETVFKLYDTYGFPADLTNDVARER 420

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
               ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G   
Sbjct: 421 EF-AIDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTGTKG--- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               SS V A+  +G  VE   +G K  +V  +TPFYAE+GGQ 
Sbjct: 471 --------------------SSSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQC 510

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +    ++ D QK       HH ++  G+L     +   +D + R  +S+NHS
Sbjct: 511 GDAGEIRTESGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHS 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  DGLRFD +H + +T+AELK +E  VN  I +N  
Sbjct: 570 ATHLLHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQIRRNHV 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + T +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L 
Sbjct: 630 IETNVMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SE  I AGIRRIEA+TG+ A   +  Q  K +               ++ E  ++ +
Sbjct: 685 KITSEGGIAAGIRRIEAVTGEGALDAIEAQAAKYEE--------------KLAESAQKAK 730

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L+    K K ++   +          I     +   +   D+K L++++D ++ ++ SG
Sbjct: 731 SLEKEIQKLKDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSG 790

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L  +  + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +  
Sbjct: 791 VILLANV-NDDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVA 848

Query: 884 KADQAIAGVASFLKK 898
               AI  V  +L++
Sbjct: 849 ALPAAIQTVQPWLEE 863


>gi|326575283|gb|EGE25211.1| alanyl-tRNA synthetase [Moraxella catarrhalis CO72]
          Length = 893

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/922 (39%), Positives = 519/922 (56%), Gaps = 56/922 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y
Sbjct: 1   MKTMQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
               + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K
Sbjct: 61  VRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEK 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169
              L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPC
Sbjct: 121 WLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPC 180

Query: 170 GPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EIF+D GE I GGLP    E+G+RYIEIWN VFMQF +Q       LPK S+DTGM
Sbjct: 181 GPCTEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GLER++ ++Q    NY+ D+F  L+  +  +       +  N  + +V+ DH+RS +FLI
Sbjct: 241 GLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  
Sbjct: 301 ADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHK 360

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE+ +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+ 
Sbjct: 361 IEQAILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVR 420

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  ID   F  ++ EQR+RAR              + +L +   AT+F+GY+ L   
Sbjct: 421 EKGIT-IDEAGFELSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  + Q G+ V+    G +  ++ D+TPFYAE+GG
Sbjct: 474 -----------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+G+ G    +     + D QK  + I   H +V+ G +    S    +  Q R   + N
Sbjct: 511 QVGELGEISTESGVFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N
Sbjct: 570 HSATHLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGE 704
            P    I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+
Sbjct: 630 TPAHVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGD 689

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SE  I AG+RRIEA+TG  A  ++   D++L  LA+  K  +  +  RV ++ 
Sbjct: 690 IGLFKIISEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLS 749

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R L+    +   +      +        I     +   ++ +D+K L+++ D ++ K
Sbjct: 750 DKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSK 809

Query: 820 IQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ
Sbjct: 810 LADGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQ 868

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            G  +     + + G+  ++ +
Sbjct: 869 GGATDVANLPKLMTGLIDWIGE 890


>gi|329999040|ref|ZP_08303295.1| alanine--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|328538480|gb|EGF64595.1| alanine--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 875

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI +  +VTG         + RVI DH+RS +FL+ADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATD--LTNKSLRVIADHIRSCAFLVADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++    GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK       H   V  G L+   ++   +D   R+++ +NHSATH
Sbjct: 510 GELKGVGFSFAVSDTQKYG-QAIGHIGKVASGTLKVGDAVQADVDEARRQRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S I++
Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|188581873|ref|YP_001925318.1| alanyl-tRNA synthetase [Methylobacterium populi BJ001]
 gi|205830142|sp|B1ZC90|SYA_METPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|179345371|gb|ACB80783.1| alanyl-tRNA synthetase [Methylobacterium populi BJ001]
          Length = 891

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/897 (49%), Positives = 585/897 (65%), Gaps = 40/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TVY +D+EA  LWKKI+G   DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 TPERLLVTVYADDDEAAGLWKKIAGFGDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG P    E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PALAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNPLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E     ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPATRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL++++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGRAFPELVRSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG  G+D  +F+
Sbjct: 361 KTLERGLAILDAESRDLSAGQNLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTQAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+  ARA   G G   TE +WF +KE+ GAT+F+GY+                  
Sbjct: 420 AAMQRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    ++V A++++G  VE   +G    VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 462 -----TETAEAVVGALLREGGEVETLKAGDSGIVVVNQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++T+ +KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KARVTNTEKKLGDLFVHHVTVEEGTLSLGAAVELKVDHARRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELTRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+                     LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGWEVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VIGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A  + ++ +   S       ++  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREVNGVRLMARVVEGVEMRDLKGLADEGKSRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + +VG+S + KA +++ VTEDL  R++AV L R  A  LGG GGGGR  MAQ+GGP+
Sbjct: 817 VAIVGVSADGKAGLVVGVTEDLTGRYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGPD 873


>gi|262043942|ref|ZP_06017027.1| alanine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259038706|gb|EEW39892.1| alanine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 875

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGNMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI +  +VTG         + RVI DH+RS +FL+ADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATD--LTNKSLRVIADHIRSCAFLVADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++    GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK       H   V  G L+   ++   +D   R+++ +NHSATH
Sbjct: 510 GELKGAGFSFAVSDTQKYG-QAIGHIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S I++
Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|83594150|ref|YP_427902.1| alanyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|123525949|sp|Q2RQI0|SYA_RHORT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83577064|gb|ABC23615.1| alanyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
          Length = 883

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/891 (48%), Positives = 586/891 (65%), Gaps = 35/891 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS  S IR TFL+FF KNGH+ + SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSTTSEIRRTFLDFFVKNGHQEVASSPLVPLNDPTLMFTNAGMVQFKNVFTGAETRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW L+T+E+ L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIDFAWRLITEEYAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+  DE+A  LW+K++GL  ++IIRI TNDNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLVTVHTSDEDAAGLWRKVAGLPDERIIRIPTNDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS++E  +R+IEIWNLVFMQFEQ    +R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 PKVAGGPPGSADENGDRFIEIWNLVFMQFEQLTVDQRVALPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDL + LI+A     G   +G + V+HRVI DHLRS+ FLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLMRALIEAIASAAGTDPDGPHKVSHRVIADHLRSACFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  +PLM  L+PAL  EM   +PEL +A  LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHMMGCVDPLMFKLVPALNREMADQFPELNRANALITETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           + LDRGL LL      L   + L G VAFKLYDT+G PLD+ QD L  RG  G+D   F+
Sbjct: 361 QMLDRGLKLLAEETGDLASGDSLPGPVAFKLYDTYGFPLDLTQDALRPRG-IGVDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR  AR    G G   TE +WF ++++ GA++F+GY                   
Sbjct: 420 AAMARQREDARKSWTGSGDHATEAVWFDIRDRVGASEFLGYTSTD--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538
                       + A+V  G++VE A +  +V V+ +QTPFY E+GGQ+GD G   + +G
Sbjct: 465 --------AEGAIVALVVDGKVVESAPADTEVAVIANQTPFYGESGGQMGDAGEIRLAEG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++ + D  KK   + VH   VE   +R   +    +D + R  L  +HSATHLLH AL 
Sbjct: 517 GKVVVRDTAKKLGALHVHIGRVEGATIRVGQAARFVVDTERRDALRSHHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS + PD LRFD++H KP+++AE++ +ED+VN  I  N  + T+IM+ + 
Sbjct: 577 RRLGEHVTQKGSLVAPDRLRFDISHPKPLSAAEIRVVEDDVNREIRANAEITTQIMDPDS 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AI +GA AL G KY + VRVVS+   + G     S  LCGGTH   TG+I    I+ E +
Sbjct: 637 AIEAGAMALFGEKYGEEVRVVSMGRREPGANRPFSVELCGGTHARRTGDIGFFKIIGEGA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TGQ A  H+  QD+ +   A  LKV+  ++ GR++ + ++ R+L+   A
Sbjct: 697 VASGVRRIEAVTGQAAFEHIEAQDDLVSGAAQLLKVTPADLPGRIQALLDDRRRLERDLA 756

Query: 776 KRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L          +  +I  V ++  ++ +V +K+LK ++D ++K++ SG++ L+ +
Sbjct: 757 DARRKLATGGGGAAAPAVVEINGVKWVGRLLEDVPAKDLKGMVDEVKKQLGSGVVALIAV 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + + KAS+++ VTEDL+ RF+AV L R  A  +GG GGGGRP MAQ+GGP+
Sbjct: 817 A-DGKASLVVGVTEDLVGRFDAVALVRAGAGAIGGKGGGGRPDMAQAGGPD 866


>gi|319427213|gb|ADV55287.1| alanyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 874

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/909 (41%), Positives = 553/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWSFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+     +  + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTD--LSNKSLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L   + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALSELT-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYTELVG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  +V D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +GI   + D QK  +       ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGIEFTVNDTQKYGQATGHQ-GVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 744

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L     +        +  +N +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGINVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|152971551|ref|YP_001336660.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|205830073|sp|A6TCV9|SYA_KLEP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150956400|gb|ABR78430.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 875

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI +  +VTG         + RVI DH+RS +FL+ADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATD--LTNKSLRVIADHIRSCAFLVADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++    GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDGASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK       H   V  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFSFAVSDTQKYG-QAIGHIGKVASGSLKVGDAVQADVDEARRHRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S I++
Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|59711143|ref|YP_203919.1| alanyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|71657966|sp|Q5E7G5|SYA_VIBF1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|59479244|gb|AAW85031.1| alanyl-tRNA synthetase [Vibrio fischeri ES114]
          Length = 859

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/905 (41%), Positives = 533/905 (58%), Gaps = 58/905 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+  +L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             RL +TVY+ D+EAF++W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 ADRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ + +V G  Y+  +  + RV+ DH+RS S+LI DG++P+
Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKEAAKVIG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ +L+  L +L    +L+G+  FKLYDT+G P D+  D+   R L  I
Sbjct: 361 EEENFGRTLERGMAILNEALDNLE-GTVLDGETVFKLYDTYGFPADLTNDVARERELT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR        G     + ++ +    T F GYD            
Sbjct: 419 DEDGFEKAMEEQRQRAREA------GQFGTDYNAVIKVESETVFHGYDSTE--------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V A+ ++GE V+   +G    ++ DQTPFYAE+GGQ GD G 
Sbjct: 464 --------------AKASVVALFREGEEVDALSAGDDAILILDQTPFYAESGGQCGDAGI 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  +  +TD  K       HH  +  G+L      +  +D   R  + +NHSATHLL
Sbjct: 510 ITVETGKFVVTDTHKIGN-AIGHHGKLVEGVLSKADHAMAQVDETRRAAIILNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + + + EL+ +E  VN  I  N  + T +
Sbjct: 569 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 629 MDIDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG+ A   +  Q +                  + +++ +E ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIEAQQKAADK-------KLNEAASKAKQLEKEIQQLKDK 736

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            A ++    +      +IA    +   +   ++K L+ ++D L+ +I SGIIML  +S E
Sbjct: 737 LASQESASLIN--KVQEIAGTKVLVAQLDGAENKALRGMVDELKNQIGSGIIMLGNVS-E 793

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K  ++  VT+DL+ +  A +L  + A+ + GG GGGRP MAQ+GG +      A+A V 
Sbjct: 794 GKVGLIAGVTKDLIGQVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAEALPNALASVE 852

Query: 894 SFLKK 898
           ++L +
Sbjct: 853 AWLTE 857


>gi|240139285|ref|YP_002963760.1| alanyl-tRNA synthetase [Methylobacterium extorquens AM1]
 gi|240009257|gb|ACS40483.1| alanyl-tRNA synthetase [Methylobacterium extorquens AM1]
          Length = 891

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/896 (50%), Positives = 584/896 (65%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +DEEA  LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG P    E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E +   ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL +++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG  G+D  +F+
Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTKAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+  ARA   G G   TE +WF +KE+ GAT+F+GYD                  
Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    ++V A+++ G  VE   +G+   VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 462 -----TEAAEAVVGALLRDGSEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++T   KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KARVTGTDKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+                  S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A  + ++ +   S       +I  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + LVG+S + KA +++ VTEDL +R++AV L R  A  LGG GGGGR  MAQ+GGP
Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872


>gi|295097277|emb|CBK86367.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 875

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 563/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAFDIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF  LI+A  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFSTLIKAVAEVTGATD--LSNKSLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDDELAKLK-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR       S      + ++     A++F GY+ L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARE------SSGFGADYNAMIRVDSASEFKGYEEL-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++S V A+   G+ V+   +GQ+  V+ D+TPFYAE+GGQ+GD 
Sbjct: 465 ---------------ALTSNVTALFVDGKAVDSISAGQEAVVILDKTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+G    ++D QK       H   +  G L+    +   +D   R ++ +NHSATH
Sbjct: 510 GELKGNGFSFSVSDTQKYG-QAIGHQGKLVSGSLKVGEGVQANVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +  +E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A   GA AL G KY+DRVRV+S+     G  S+ LCGGTH S TG+I L  IV
Sbjct: 629 HIMDLEAAKKKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    +  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIASLHAQSDQLHEIAQLLKGDSQNLGEKVRVALDRTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDIKGVKLLVSDLAGVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|254507377|ref|ZP_05119512.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 16]
 gi|219549633|gb|EED26623.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 16]
          Length = 860

 Score =  892 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/911 (41%), Positives = 537/911 (58%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G +    +  + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKAAAEVVGCED--LSNQSLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G       
Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNATIKTEAETEFCGYTGTQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  I  +GE+ E   +G K  ++  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------KSNVAEIFVEGEVAESLSAGDKAIIILGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFKVEDTQKLGN-AIAHHGVLAEGVLAKGDEVEAIVDAERRASISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H + +T  ELK +E  VN  + +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKPENLRFDFSHLEAVTPTELKEVERLVNAQVRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +               ++ E  ++ + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEEQQAKYEE--------------KLVESAQKAKSLEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   +         +I     +   +   D+K L++++D ++ ++ SG+I+L
Sbjct: 730 EIQKLKDKMAAAESANIMGKVQEINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVILL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             I+ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     +
Sbjct: 790 ANINGD-KIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPE 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIKTVQPWLEE 858


>gi|254561741|ref|YP_003068836.1| alanyl-tRNA synthetase [Methylobacterium extorquens DM4]
 gi|254269019|emb|CAX24980.1| alanyl-tRNA synthetase [Methylobacterium extorquens DM4]
          Length = 891

 Score =  892 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/896 (49%), Positives = 585/896 (65%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +DEEA  LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG P    E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E +   ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEASTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL +++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG  G+D  +F+
Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTKAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+  ARA   G G   TE +WF +KE+ GAT+F+GYD                  
Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    +++ A+++ G  VE   +G+   VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 462 -----TEAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++T  +KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KARVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+                  S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A  + ++ +   S       +I  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + LVG+S + KA +++ VTEDL +R++AV L R  A  LGG GGGGR  MAQ+GGP
Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872


>gi|153001637|ref|YP_001367318.1| alanyl-tRNA synthetase [Shewanella baltica OS185]
 gi|205830202|sp|A6WR16|SYA_SHEB8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151366255|gb|ABS09255.1| alanyl-tRNA synthetase [Shewanella baltica OS185]
          Length = 874

 Score =  892 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/909 (42%), Positives = 555/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSD--LTEKSLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDTALNELK-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFTGYTELAG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI   GE V    +G +  VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYLNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +GI   + D QK  +       ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGIEFTVNDTQKYGQATGHQ-GVLATGSLSVGQVIEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN  I +N  + T  M
Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L     +        +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TTQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|326794049|ref|YP_004311869.1| alanyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326544813|gb|ADZ90033.1| alanyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 871

 Score =  892 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/910 (42%), Positives = 540/910 (59%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R +FL +F+   H+++ SSSLIP NDPTL+FTN+GMV FK++F G +K  Y   
Sbjct: 1   MKSSELRQSFLSYFESKQHQVVESSSLIPGNDPTLLFTNAGMVQFKDVFLGTDKRNYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK   L 
Sbjct: 61  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIGYAWEFLTKVAKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           Q +L +TVY ED+EAF +W K  GL  +KIIRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 QEKLLVTVYAEDDEAFDIWHKEIGLPKEKIIRIGDNKGARYASDNFWQMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +F+D GE I GG PGS  E+G+R+IEIWN+VFMQF +    +   LPK S+DTGMGLER+
Sbjct: 181 VFYDHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRSANGDMAPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+IDLF++LI+AS    G         + RVI DH+RS SF+I DG++P+
Sbjct: 241 AAILQGVHSNYEIDLFQNLIKASANAVGTND--LESQSLRVIADHIRSCSFMIVDGVVPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+ AL +EMG AYPEL + K  +   L  
Sbjct: 299 NEGRGYVLRRIIRRAIRHGNKLGQKGVFFHTLVEALDSEMGEAYPELRKLKERVASILLK 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F KTLD+G+ +L+  +S LG  +++ G+  FKLYDT+G P D+  D+        I
Sbjct: 359 EEEQFAKTLDQGMRILEEAISELGDSKVIPGETVFKLYDTYGFPADLTNDVARE-NELEI 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+EEQR+RAR+ S      + +    S       T+F GY  L G        
Sbjct: 418 DEAGFEAAMEEQRARARSASNFSMDMSGDVSIDS------ETEFTGYTELEGDC------ 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                            +V+A++  G  V+E  +GQ   V+   TPFY E+GGQ GD G 
Sbjct: 466 -----------------VVEALIVDGSNVDEIQAGQDAVVLLKSTPFYGESGGQAGDQGW 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G G          K     +H  +++ G ++   ++   +D   R   ++NHSATHL+
Sbjct: 509 LRGPGA--FKVSNTAKQGKAHLHQGVLKEGAIKVGDTVAAQVDRSMRNATALNHSATHLV 566

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  I+G HV+Q GS +  + LRFD +H + +T+AE++ +ED VN+ I  N  V+T I
Sbjct: 567 HEALRRIVGDHVNQKGSLVNAERLRFDFSHFEGLTNAEIEQVEDMVNEQIRLNHEVITEI 626

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A   GA AL G KY+  VRV+++    G  +S  LCGGTHV  TG+I L  IV+E
Sbjct: 627 MDVDSAKEKGAMALFGEKYDSEVRVLTM----GADYSIELCGGTHVKRTGDIGLFKIVTE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA+TG+ A   +   +  L  +A+ +K ++ N + +V  + ++ R LQ  
Sbjct: 683 GGIAAGVRRIEAVTGKAAIDAVRQTENALNGVAAVVKGNKENALEKVSALNDQARALQKE 742

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L     S        I     +   +   D K L+ ++D L+ K++S +I+L 
Sbjct: 743 IDALKSKLAAAAGSDLAGQAIDIEGGKLLVAQVES-DPKALRDLLDQLKSKLESAVILLA 801

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K S++  VT++L  +  A DL ++ A ++  G GGGRP MAQ+GG N      A
Sbjct: 802 AV-NDGKVSLIAGVTKELTKKVKAGDLIKMVAPLV-DGKGGGRPDMAQAGGNNPAALPDA 859

Query: 889 IAGVASFLKK 898
           +  V +++K+
Sbjct: 860 LEQVPAWVKE 869


>gi|21242491|ref|NP_642073.1| alanyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
 gi|24418694|sp|Q8PLQ0|SYA_XANAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21107940|gb|AAM36609.1| alanyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 882

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/909 (42%), Positives = 534/909 (58%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDVIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+        + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQTLIGKAGSLTGVAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALSAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA       G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V AI++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVAILRQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSVEVADTQKFAGQFHGHVGRISEGALALGDVLAGEIDTQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +       +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTTEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L              +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGARAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|262372182|ref|ZP_06065461.1| alanyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262312207|gb|EEY93292.1| alanyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 884

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/913 (43%), Positives = 530/913 (58%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 8   MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AWD LT  +   
Sbjct: 68  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWDFLTNEQWLA 127

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  GL A +IIRI  N       DNFW+M +TGPCGPC
Sbjct: 128 LPKDRLYVTVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPC 187

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 188 SEIFYDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 247

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 248 RISAVLQHVNSNYEIDLFQHLLKAAANIIGIQDEG--QPSLRVLADHARSCCFLIADGVN 305

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL
Sbjct: 306 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLVEVMGEAYPELASRKDVIEATL 365

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+  L+ L  D ++ G   FKLYDT+G P D+  DI   RG  
Sbjct: 366 LREEEQFAKTLEQGLKLLEAELAQLK-DTVIPGATVFKLYDTYGFPTDLTADIARERGFT 424

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + S+ +  G TQF GYD  +G      
Sbjct: 425 -IDETGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGYDATQG------ 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 472 -----------------QGQIVAIYKDGTQVDEINEGDEALIVLNQTPFYAESGGQIGDT 514

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D    ++ D +K     FVH  IV  G L+   ++  T+    R   + NHSATH
Sbjct: 515 GIFKNDTGIFEVQDTKKSGG-AFVHQGIVTMGSLKATQNVEATVKADIRAATARNHSATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HV Q GS +  D LRFD  + +P+T  +L+ IE  VN  +  N PV T
Sbjct: 574 LLHAALRQILGDHVQQKGSLVASDILRFDFANDQPVTFEQLQQIERLVNAEVIANTPVTT 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY + VRV+S+    +    S  LCGG HV  TG+I L  I
Sbjct: 634 ELLDIESAKAKGAMMLFGEKYGEEVRVLSMGSIIEEKNFSIELCGGIHVKRTGDIGLFKI 693

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++++   LK  +   V +VE I E    L
Sbjct: 694 TSEGGVAAGVRRIEAVTGTKALEAVQKADSDIQTINGLLKAQKDQTVEKVEAIVETASSL 753

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     +       +IA    +   +  +D+K L+++ D+++ K++  +I
Sbjct: 754 QKQIEQLNQKLASFQAADLLDQVKEIAGRQTLITTVKGLDAKSLRNLHDSVKSKLEDAVI 813

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S++  V +       A D+ +  A+ L GG GGG+P +AQ G P   K 
Sbjct: 814 ILAGVEGD-KVSLIASVAKQYAANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAPLNEKF 871

Query: 886 DQAIAGVASFLKK 898
           DQ  A + ++L++
Sbjct: 872 DQVFAALPAWLEQ 884


>gi|160899488|ref|YP_001565070.1| alanyl-tRNA synthetase [Delftia acidovorans SPH-1]
 gi|205830045|sp|A9C0B9|SYA_DELAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160365072|gb|ABX36685.1| alanyl-tRNA synthetase [Delftia acidovorans SPH-1]
          Length = 874

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/909 (41%), Positives = 531/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR +FL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y+  T
Sbjct: 7   TVADIRKSFLDFFASKGHTIVESSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYKRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L +
Sbjct: 67  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI         +DNFW MA+TGPCGPCSEI
Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG P    E+G+R+IEIWN VFMQF+   +     LP   +DTGMGLER+A
Sbjct: 187 FYDHGAHVAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF+ LI+A+ + T +        + +VI DH+R+++FL+ADG++P+N
Sbjct: 247 AILQHVHSNYEIDLFQALIKAAARETHIADI--ETPSLKVIADHIRATAFLVADGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L   MG AYP++ + +  I E LR E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKTPFFHKLVKDLVAVMGDAYPKIREQEARITEVLRVE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  ++L GDVAFKL+DT+G PLD+  D+   RGL+ +D
Sbjct: 365 EERFFETLANGMEILDAALA--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERGLS-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+EEQ+++ARA           K+  +L+    A  F GY  L           
Sbjct: 422 EAGFQTAMEEQKNKARAAGKF-------KMDRALEYTGDANAFTGYQKL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ V A+  +G  V+E  +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 464 ------------AEAAKVVALYAEGSAVQELKAGQSGVVVLDTTPFYAESGGQVGDQGVI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  + D  K    +F HH ++E G L+   ++   +D Q R     NHS TH++H
Sbjct: 512 STAGARFAVEDTLKIKADVFGHHGVLESGSLKVGDAVQAEVDTQLRAATMRNHSVTHIMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H++P+T+ E++ IE  VN  I  N P   R+M
Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNQPVTAEEIREIERRVNAEILANTPTDARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A A+GA  L G KY D VRV+ +        S  LCGGTHV  TG+I L  +V E 
Sbjct: 632 DIESAKATGAMMLFGEKYGDSVRVLDIGS------SRELCGGTHVQRTGDIGLFKVVGEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG+ A ++L   +  +   A+ LK     +  R+    E+ R L+   
Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPTAELNTRIGGALEQIRALEKEV 745

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L              +  +  ++  +   D+K L+  MD L+ K+ +  I+L  
Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRDTMDKLKDKLGAAAIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT+    R  A DL    A  + GG GGG+P MA +GG + +    A+
Sbjct: 806 VDGD-KVQLAAGVTKAETSRIKAGDLVNFVASQV-GGKGGGKPDMAMAGGTDASGLPAAL 863

Query: 890 AGVASFLKK 898
           AGV +++ +
Sbjct: 864 AGVHAWVAE 872


>gi|294626627|ref|ZP_06705224.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665630|ref|ZP_06730907.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292599047|gb|EFF43187.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292604576|gb|EFF47950.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 882

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/909 (42%), Positives = 534/909 (58%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+        + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGVDAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA       G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V AI++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVAILRQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDTQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +       +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTTEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L              +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGARAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|257093631|ref|YP_003167272.1| alanyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257046155|gb|ACV35343.1| alanyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 878

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/910 (40%), Positives = 523/910 (57%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 8   MKSAEIRDKFLKFFESKGHQIVASSSLVPHADPTLLFTNAGMNQFKDVFLGFDKRPYLRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LL   + L 
Sbjct: 68  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAIRYAWELLVDVYGLP 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             RL++TVY ED+EA+ +W +  G+ A+++ RI  N       DNFW M +TGPCGPC+E
Sbjct: 128 PDRLWVTVYAEDDEAYDIWTREIGVPAERVERIGDNKGARYASDNFWMMGDTGPCGPCTE 187

Query: 175 IFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D       G      EEG+RYIEIWN VFMQF +        LPK S+DTGMGLER 
Sbjct: 188 IFYDHGEGIPGGPPGSPDEEGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERT 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF  LI A+ + T       +  + RV+ DH+R+ +FLIADG++P 
Sbjct: 248 AAVLQHVHSNYEIDLFVRLIAAAARETAS--AELDSPSLRVLADHIRACAFLIADGVIPG 305

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+P L  EMGSAYPEL+  +  + + LR 
Sbjct: 306 NEGRGYVLRRIIRRAIRHGYKLGARAAFFHRLVPDLVAEMGSAYPELVSQQARVTDVLRQ 365

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +T++ G+ +L+G L+ L    + NG  AFKL+DT G PLD+  D+   RG   +
Sbjct: 366 EEVRFFETIEHGMSILEGELASLPGQGVFNGTTAFKLHDTFGFPLDLTADVCRERG-VSV 424

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+ +F+ A+ +Q+ +ARA      +   +            T F GY+ L          
Sbjct: 425 DVAAFDAAMAQQKEQARAAGKFRMATALD-------YSGPPTTFHGYERLD--------- 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                         V+  V A+ + G  V+E   G    VV D+TPFYAE+GGQ+GD G 
Sbjct: 469 --------------VTGKVLALYRDGSPVDELSEGDIGVVVLDETPFYAESGGQVGDRGV 514

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G    + D QK    +F HH +V  G+LR +  +   +D   R +   NHSATHL+
Sbjct: 515 LQTAGGIFAVEDTQKIQAAVFGHHGVVRTGVLRVDDGVAAKVDVLARARTVRNHSATHLM 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + P+  RFD  H+ P+++ E++ +E  VN+ I  N     RI
Sbjct: 575 HKALREVLGGHVQQKGSLVDPEKTRFDFAHNAPLSADEIRHVEVIVNNEILANAATDARI 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  E+A  SGA  L G KY D VRV+++        S  LCGG HV  +G+I L  I++E
Sbjct: 635 MPIEEAQRSGAMMLFGEKYGDEVRVLTIGS------SKELCGGVHVRRSGDIGLFKILAE 688

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + + AG+RR+EA+TG  A + +  Q   L   A+ +K     V  ++ ++ +  R L+  
Sbjct: 689 TGVAAGVRRVEAVTGDNALALVQQQQALLAEAAAAVKAPVSEVPAKLAQVLDNVRSLEKE 748

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A+ K +L             ++     ++ ++   D   L+S +D L+ K++S  ++L 
Sbjct: 749 LARLKARLASAQGDDLLAQAVEVKGARVLAAVMDGADVNALRSTIDKLRDKLKSAAVVLA 808

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K +++  VT DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A
Sbjct: 809 STA-DGKVTLIAGVTGDLTGKVKAGELVNMVARQV-GGKGGGRPDMAQAGGSDAANLPAA 866

Query: 889 IAGVASFLKK 898
           +A V +++++
Sbjct: 867 LASVRAWVEQ 876


>gi|120553897|ref|YP_958248.1| alanyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|205830137|sp|A1TZ92|SYA_MARAV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120323746|gb|ABM18061.1| alanyl-tRNA synthetase [Marinobacter aquaeolei VT8]
          Length = 876

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/912 (42%), Positives = 552/912 (60%), Gaps = 54/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FLE+FQ+ GH ++PSSSL+P +DPTL+FTN+GM  FK++F G+E+  Y   
Sbjct: 1   MKTAELRQAFLEYFQQQGHAIVPSSSLVPHDDPTLLFTNAGMNQFKDLFLGREERDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119
           T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +
Sbjct: 61  TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTGEQHLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L Q +L++TVY ED+EAF +W +  G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPQEKLWVTVYAEDDEAFDIWNQEIGVPAERIVRIGDNKGARYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G  + GG PGS  E+G+RYIEIWN+VFMQ+ +    E   LPK S+DTGMGLE
Sbjct: 181 TEIFFDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRTADGEMLNLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ L++A+  + G         + RV+ DH+RS +FLIADG++
Sbjct: 241 RIAAVLQGVHSNYEIDLFQDLLKAASDILGGA--ATTEASLRVVADHIRSCAFLIADGVM 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRG+VLRRI+RRA  +   LG T+P    L  AL   MG AYP+L+ ++  IE+ L
Sbjct: 299 PSNEGRGFVLRRIIRRAARHGNKLGATQPFFYKLTGALVELMGEAYPQLVSSRKQIEKVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTLD+GL LL+  ++ L   EI  G+  F LYDT+G P+D+  DI   RGL 
Sbjct: 359 LQEEEQFAKTLDKGLRLLEQDIAELKGTEI-PGETVFTLYDTYGFPVDLTNDIARERGLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   + +A+E QR RARA S          I        G T+F GYD + G +    
Sbjct: 418 -LDYEGYEKAMEAQRDRARAASKFGIDYNAAGITIE-----GKTEFTGYDHVDGHE---- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               ++ ++  GE    A +G +  VV ++TPFYAE+GGQ+GDT
Sbjct: 468 -------------------RIRTVLVNGEERN-AEAGDECVVVLERTPFYAESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G R Q+TD +K+ +   +H   +  G L   + +   ID+  R +   NHSATH
Sbjct: 508 GLLTWSGGRFQVTDTRKEGDN-HLHVGTLIEGELFPGLEVDARIDHARRERTKRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HV+Q GS + PD LRFD +H + +T  +L+ IE  VN+ I +N PV  
Sbjct: 567 LLHAALRNILGEHVTQKGSLVDPDKLRFDFSHFEAVTPEQLREIERTVNEQILENTPVDI 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I + + A   GA AL G KY D VRV+++       +S  LCGGTHV+ TG+I L  I 
Sbjct: 627 DITDMDTAKEKGAMALFGEKYGDVVRVLTMGT---DKYSVELCGGTHVARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG  A   +   +  L+  A  +K ++ +VV +V+++ +  R+L+
Sbjct: 684 SESGISSGVRRIEAVTGLGALEWVDETERTLRETARLVKGTRDSVVDKVKQVLDRNRQLE 743

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L          S  ++A +  ++  +   D K L    D L+ K+  G+++
Sbjct: 744 KDVDALKAKLASSAGTDLAGSAVEVAGLKVVASEMEGADRKALMETADQLKNKLGEGVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + ++ K  ++  VT+   +R  A DL +  A ++  G GGGRP MAQ GG + ++  
Sbjct: 804 LATV-EDGKVVLVAGVTKSATNRIKAGDLMKHLASLV-DGKGGGRPDMAQGGGNDPSRLA 861

Query: 887 QAIAGVASFLKK 898
           +A+AGV +++++
Sbjct: 862 EALAGVPAWVEQ 873


>gi|329902133|ref|ZP_08273037.1| Alanyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548856|gb|EGF33484.1| Alanyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 869

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/909 (42%), Positives = 536/909 (58%), Gaps = 57/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL+FF+  GH ++ SS LIP NDPT++ TNSGMV FK++F G ++  Y  
Sbjct: 1   MKST-EIRAKFLKFFESKGHTIVRSSPLIPGNDPTMLLTNSGMVQFKDVFLGTDQRAYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  + L
Sbjct: 60  ATSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTNVYLL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY ED+EA+ +W    G+  ++IIRI  N       DNFW MA+TGPCGPCS
Sbjct: 120 PKEKLWVTVYHEDDEAYAIWANEIGIPTERIIRIGDNKGARYASDNFWQMADTGPCGPCS 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS+ E+G+R+IEIWNLVFMQF +  +     LPK  +DTGMG+ER
Sbjct: 180 EIFYDHGPEIWGGPPGSAEEDGDRFIEIWNLVFMQFNRDEQGNMPRLPKPCVDTGMGMER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A +LQ   +NY+IDLF++LI+A+ + TG    G+N  + +VI DH+R+ +FLI DGI+P
Sbjct: 240 LAAILQHVHSNYEIDLFQNLIKAAARETGTTDLGDN--SLKVIADHIRACAFLIVDGIIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           A+EG GYVLRRI+RRA+ +   LG  +P    L+  L  EMG AYPEL QA + +E+ LR
Sbjct: 298 ASEGHGYVLRRIIRRALRHGHKLGQAKPFFYLLVKDLVIEMGEAYPELTQAAVRVEQVLR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERFG+TL+ G+ +L+  L  L     L+G  AF LYDT G PLD+  DI   R    
Sbjct: 358 QEEERFGETLEHGMKILEAAL--LVTPTQLDGQTAFTLYDTFGFPLDLTADICRER-KVE 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   FN A+E+QR+ ARA      +   E            T+F+GYD L         
Sbjct: 415 LDEAGFNVAMEQQRTTARAAGKFKMAAAVE-------YSGDKTRFVGYDALEQ------- 460

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           S+ V A+   G  V    +GQ+  VV D TPFYAE+GGQ+GDTG
Sbjct: 461 ----------------SAGVIALYVNGTAVPRMTAGQEGIVVLDVTPFYAESGGQVGDTG 504

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G  ++  + D  +    +F HH  +  G L     +   +D   R +   NHSATHL
Sbjct: 505 MLTGAAVQFHVADTLRIQSEVFGHHGTLAGGTLSVGDKVAANVDPVARGRTIRNHSATHL 564

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +  D  RFD +H+ P+T+ E++ +E  VN  I  N+    R
Sbjct: 565 MHKALREVLGAHVAQKGSLVDTDKTRFDFSHNGPLTADEIRQVELIVNREILANVATEAR 624

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ +        S  LCGG HV  TG+I L  I +
Sbjct: 625 VMPYDDAVKYGAMALFGEKYGDEVRVLGIGS------SKELCGGVHVDRTGDIGLFKITA 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AGIRR+EA+TG+ A + +     +++  A+ LKV    +  R+ ++ ++ R L+ 
Sbjct: 679 ESGVAAGIRRVEAVTGEGALALVQALSRQMQDAAAILKVQPDELSQRIGQVQDQVRSLEK 738

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             +  K +L              I  +  ++ ++   D   L+  MD L+ K+++  I+L
Sbjct: 739 DVSALKSRLAANQGDELLGQAVDIKGIKVLAAVLLGADVAALRVTMDKLKDKLKTAAIVL 798

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K S++  VT D   R  A +L    A  + GG GGGRP MAQ+GG + +    
Sbjct: 799 AAV-NDGKVSLIAGVTADATSRIKAGELVNFVALQV-GGKGGGRPDMAQAGGTDPSGLAA 856

Query: 888 AIAGVASFL 896
           A+ GV  ++
Sbjct: 857 ALLGVPGWV 865


>gi|218530772|ref|YP_002421588.1| alanyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
 gi|218523075|gb|ACK83660.1| alanyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
          Length = 891

 Score =  892 bits (2304), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/896 (49%), Positives = 584/896 (65%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYLK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +DEEA  LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG P    E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E +   ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL +++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG  G+D  +F+
Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTKAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+  ARA   G G   TE +WF +KE+ GAT+F+GYD                  
Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    +++ A+++ G  VE   +G+   VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 462 -----TEAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  +T  +KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KAGVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRSNHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+                  S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A  + ++ +   S       +I  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + LVG+S + KA +++ VTEDL +R++AV L R  A  LGG GGGGR  MAQ+GGP
Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872


>gi|323496144|ref|ZP_08101204.1| alanyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323318888|gb|EGA71839.1| alanyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 860

 Score =  892 bits (2304), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/911 (41%), Positives = 534/911 (58%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ ++ G +    +  + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEIVGHED--LSNQSLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAGEELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVAREREFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G       
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNATIKTEEQTEFCGYTGTQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  I  +GE      +G K  ++  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------KSNVAEIFVEGEAAGSLSAGDKAIIILGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGVFKVEDTQKLGN-AIAHHGVLAEGVLAKGDDVEAVVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H + +T AELK +E  VN  +  N  + T 
Sbjct: 569 LHAALRKVLGEHVTQKGSLVKPENLRFDFSHLEAVTPAELKEVERLVNAQVRHNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +               ++ E   + + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEAQQAKYEE--------------KLAESASKAKSLEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   +         +I  V  +   +   DSK L++++D ++ ++ SG++ML
Sbjct: 730 EIQKLKDKMAAAESANIMGKAQEINGVKVLVAGMEGADSKNLRTMVDDIKNQMGSGVVML 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + +    
Sbjct: 790 ANV-NDGKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVDALPA 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIQSVQPWLEE 858


>gi|302382286|ref|YP_003818109.1| alanyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192914|gb|ADL00486.1| alanyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
          Length = 881

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/894 (47%), Positives = 566/894 (63%), Gaps = 33/894 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS++  IR+TFL+FF  +GH  + S+ L+P NDPTLMF N+GMVPFK+ FTG   P Y  
Sbjct: 1   MSSLKQIRSTFLDFFAADGHTKVHSAPLVPQNDPTLMFVNAGMVPFKDYFTGAATPPYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+ AW L+T+ + L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEHAIEQAWKLVTEGYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY +D+EA  +WKK++G   DKIIRI  +DNFW+M + GPCGPC+EIF+D G
Sbjct: 121 DAKRLLVTVYIDDDEAAAIWKKVTGFGDDKIIRIAGSDNFWAMGDNGPCGPCTEIFWDYG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG P    E+G+RY+EIWN VFMQFE++N +    LPK S+DTGMGLERM +VLQ 
Sbjct: 181 DHVAGGPPGSPDEDGDRYVEIWNNVFMQFEKENDEIVRSLPKPSVDTGMGLERMTSVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K + +D DLF+ LI ASE  T  K EG+   +HRVI DHLRSSSFLIADG+ P+NEGRGY
Sbjct: 241 KNSVFDTDLFQTLIAASEDATSTKAEGDRAASHRVIADHLRSSSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L +EMG AYPEL +A+  IEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVSEMGEAYPELARAQASIEETLKQEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ LL+     LG+  ++ G  AF LYDT+G PLD+ QD    RG   +D  +F+
Sbjct: 361 TTLGRGMGLLEDATRDLGEGGVIPGQTAFTLYDTYGFPLDLTQDEARRRGFT-VDTDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++R +A+  G G   +   W +LK++ G T F GYD + G              
Sbjct: 420 AAMEQQKTRGKANWKGSGQTASTGEWLALKDRLGPTVFTGYDAVDG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  V AI++ G   +   +G+  EV+FDQTPFY E GGQ GD G     G 
Sbjct: 466 ---------SGEVLAILKDGTAADSVETGETAEVLFDQTPFYGEGGGQAGDKGEIEWAGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ DV K    ++ H   V  G L       L      R     NHSA HL+H AL  
Sbjct: 517 SARVLDVLKPTGDLYAHTIEVTSGTLAIGTRAQLRAAPDARLTTRANHSAAHLVHAALKN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H+ P+T  EL  IE  VN +I QNLP  T++M  ++A
Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHNAPLTEDELARIETEVNAVIRQNLPAETKLMGPQEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           I +GA AL G KY D VRV+++         +S  LCGGTHV+ TG+I L  I SE+ I 
Sbjct: 637 IEAGAVALFGEKYGDEVRVLTLGKSLTSDKPYSVELCGGTHVARTGDIGLFKITSETGIA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRR+EA+TG+ AR  L+ Q    +SLA   KV   +V  RVE +  E + L+   A+ 
Sbjct: 697 AGIRRVEALTGEAARQFLLAQAGVARSLAQTFKVQPLDVPARVEALSTERKALEKQVAEL 756

Query: 778 KLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +      + +  +I  V  ++ ++  VD K L+ V +  +K++ SG++ L+G++ 
Sbjct: 757 KKQLALGGGGSANAAPEEINGVKLIARVLDGVDGKGLRGVAEDFRKQVGSGVVALIGVT- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           + KA+V +  T D+ DR NA DLAR +   +GG G GG+   AQ G P+G+KA+
Sbjct: 816 DGKAAVTVAATSDVTDRVNAADLARAAVIAMGGQGAGGKADFAQGGAPDGSKAE 869


>gi|83955444|ref|ZP_00964075.1| alanyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
 gi|83840088|gb|EAP79263.1| alanyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
          Length = 886

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/896 (47%), Positives = 560/896 (62%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+K GH + PSS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MKTLNDIRSTFLGYFEKQGHSIQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  +W+L+TKE  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLY+TVY  D+EA ++WKK++GL  D+IIRI T+DNFW M  TGPCGPCSEIF+D G
Sbjct: 121 DPNRLYVTVYHTDDEAAEIWKKVAGLPDDRIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRTALPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL ++LI+AS   +    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLMRNLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL QA+ LI ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGLKDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L     L G+ AFKLYDT+G P+D+ QD L  +    +D+  FN
Sbjct: 361 QTLDRGLKLLDDELKGLPAGADLPGEAAFKLYDTYGFPVDLTQDALREQDRK-VDLEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+++ARA   G G      +WF + EK G T F+GYD                  
Sbjct: 420 AAMDAQKAKARAAWSGSGEAADATVWFDVAEKSGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A++Q G  V E   G  V++  +QTPFYAE+GGQ+GDTG    D  
Sbjct: 462 -----TETAEGQIVALIQDGAQVAEVKQGDAVQIALNQTPFYAESGGQVGDTGTIKTDSG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +TD +K A  +F+H   V  G ++T  + VL +D+  R  +  NHSATHLL+ AL  
Sbjct: 517 VVTVTDTRKTAG-VFIHIGEVTEGTVKTSQAAVLDVDHARRTSIRANHSATHLLNEALRK 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS    D LRFD +H+  +T+ +L ++E+ VN  I QN  V TRIM  +DA
Sbjct: 576 TLGDHVMQRGSLNAADRLRFDYSHNHAMTTDQLAAVEEEVNSYIRQNTAVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+          D   +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 REMGAQALFGEKYGDEVRVVSMGREAGSGKGADKQTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +SS  +GIRRIEA+TG  A   L  Q+  L  +A+ LK S  +V  RV  + +E R L  
Sbjct: 696 DSSSSSGIRRIEALTGTEALKWLRTQETALTRVAAELKTSTADVPDRVRALLDERRALAN 755

Query: 773 IHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             A+ + +L +            ++  + F++ +++ V  K+L +++D  + K+ SG ++
Sbjct: 756 EVAQLRRELAMSGGGDAGAAAPREVNGIKFIAQVVNGVTGKDLPALIDEHKAKLGSGAVL 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L+    + KA+V   VT DL    +AVD+ +     LGG GGGGRP MAQ G  + 
Sbjct: 816 LIA-DADGKAAVAAGVTADLAATISAVDIVKTVVAELGGKGGGGRPEMAQGGAKDV 870


>gi|300312908|ref|YP_003777000.1| alanyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300075693|gb|ADJ65092.1| alanyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 874

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/914 (41%), Positives = 536/914 (58%), Gaps = 61/914 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + IR  FL+FF+   H ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MNSAEIRDKFLKFFESKEHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L 
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTQVYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K  GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 121 ADKLWATVYQTDDEAYDIWTKDIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  + GG P     +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 181 IFYDHGPDVWGGPPGSPDADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A +LQ   +NY+IDLF+ LI+A+ + TG      +  + RVI DH+R++SFLI D
Sbjct: 241 GLERLAAILQHVHSNYEIDLFQALIKAAARETGETD--LSNASLRVIADHIRATSFLIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG T+P    L+  L  +MG+AYPEL +A   +E
Sbjct: 299 GVIPGNEGRGYVLRRIIRRALRHGHKLGQTKPFFHKLVKDLVVQMGAAYPELPEAAERVE 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             L+ E+ERFG+TL+ G+ +L+  L+       L+G+ AF LYDT+G PLD+  DI   R
Sbjct: 359 MVLKQEEERFGETLEHGMKILEAALA--ANTGKLDGETAFTLYDTYGFPLDLTADICRER 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
               +D   F  A+E Q+S ARA      +         ++     T+F+GY+ L     
Sbjct: 417 N-VELDEAGFTAAMERQKSAARAAGKFKMAAA-------IEYTGDKTRFVGYESL----- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               S+ V A+   G  V++  +GQ   VV D TPFYAE+GGQ 
Sbjct: 464 ------------------AQSAKVVALYVAGSPVQKIEAGQDAIVVLDTTPFYAESGGQC 505

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G          + D QK    +F HH  + +G L    ++   +D   R +   NHS
Sbjct: 506 GDAGALEAANGLFAVADTQKIQAEVFGHHGQLIKGSLAVGDAVQAKVDADQRARTMRNHS 565

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LGSHVSQ GS +  D  RFD +H+ P+T+ E++ +E+ VN  +  N+ 
Sbjct: 566 ATHLMHKALREVLGSHVSQKGSLVDADKTRFDFSHNAPMTAEEIRRVEEIVNREVLANVA 625

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              ++M  +DAIA+GA AL G KY D+VRV+S+        S+ LCGGTHV+ TG+I L 
Sbjct: 626 TGAQLMGYDDAIAAGAMALFGEKYGDQVRVLSIG------TSTELCGGTHVTRTGDIGLF 679

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE  + AGIRR+EA+TG+ A + +     ++   A+ LK     ++ R+ ++ ++ +
Sbjct: 680 KIVSEGGVAAGIRRVEAVTGEGALALVQSLSSRVAEAAAALKTQPEELLPRIGQVQDQVK 739

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L+   A  K +L              I  +  ++  +   D   L+  MD L+ K+++ 
Sbjct: 740 ALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGADVATLRETMDKLKDKLKTA 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            I+L  + K+ K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    
Sbjct: 800 AIVLGSV-KDGKVSLIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPA 857

Query: 884 KADQAIAGVASFLK 897
               A+ GVA +++
Sbjct: 858 ALPGALQGVAGWVQ 871


>gi|297616546|ref|YP_003701705.1| alanyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144383|gb|ADI01140.1| alanyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 877

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/908 (40%), Positives = 538/908 (59%), Gaps = 45/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  FL++F +NGH ++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MRTSSEIRKMFLDYFAENGHTVVESSSLVPANDPTLLFTNAGMNQFKDVFLGIDKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDL+ VGRT RHHTFFEMLGNFSFG YFK  AI  AWDLLT+   L
Sbjct: 61  ATSSQKCVRAGGKHNDLETVGRTARHHTFFEMLGNFSFGDYFKREAIFYAWDLLTRVIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++T++ +D+EAF+LW++I+G+S  KI+R+   DNFW+M +TGPCGPCSEI +D+G
Sbjct: 121 PPERLWVTIFTDDDEAFELWQEIAGISPQKIVRMGEKDNFWAMGDTGPCGPCSEIIYDRG 180

Query: 181 ECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E      P  +    + +R++EIWNLVFMQF +        LP+ SIDTGMGLER+ ++L
Sbjct: 181 EKYRCDAPLCALGVCDCDRWLEIWNLVFMQFNRDEAGNLTPLPRPSIDTGMGLERITSIL 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEG-NNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           Q   +N+D DLF  +IQ  E++TG KY+        RVI DH R+ +FLI DG+LP+NEG
Sbjct: 241 QGVDSNFDTDLFIPIIQKIEEMTGKKYDRGPGGFPFRVIADHSRACTFLIGDGVLPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ + RLLG   P +  ++  +  +M  +YP+L+  +  + + +R E+E
Sbjct: 301 RGYVLRRILRRAVRFGRLLGIEAPFLYRMVGVVVDKMKDSYPDLVDKQEFVAKVVRMEEE 360

Query: 357 RFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TL+ G+  +  ++        + ++G  AF LYDT+G PLD+ +D+    GL G++
Sbjct: 361 RFFVTLNEGIRKVGEIIERCQAEGRKDISGQDAFMLYDTYGFPLDLTEDMAEENGL-GVN 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN+ +EEQR RAR    G  +   EK    + E   +T F GY  L           
Sbjct: 420 KEDFNRLMEEQRERARRAQKGEDAFAQEKRLAEMLEGIPSTDFEGYQRLFTL-------- 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + ++AI+   E ++    G    +V  QTPFYAE+GGQ+ D G  
Sbjct: 472 ---------------TQIQAIISGDEELDLIRDG-GAILVLAQTPFYAESGGQVADKGVI 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G      + DV+K A  I   H    +GIL     +   +D Q R   + NH+ATHLLH
Sbjct: 516 KGSEGTFIVDDVKKVAGWI--LHYGRVQGILVKNEEVQAEVDEQRRLATARNHTATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G H  Q GS + P+ LRFD +H  P+T  E+++IED VN  I     V   + 
Sbjct: 574 RALRMVVGEHAQQKGSLVEPERLRFDFSHFAPLTEEEIQAIEDIVNRKIWDLEKVEVDLA 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A   GA AL G KY D VRV+S+     G  S  LCGGTHV +TG+I L  I++E 
Sbjct: 634 TLEEAKQKGAMALFGEKYGDEVRVISI-----GDFSIELCGGTHVENTGQIGLFKIINEG 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           SI AG+RR+EA+TG RA  +L  Q+ +LK+ AS LKV    +  RVE +  E ++ +   
Sbjct: 689 SIGAGLRRVEALTGPRALDYLNAQERELKTAASVLKVPAQELAQRVESLSRELKESEKEI 748

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L  ++ +       ++  V  +   +S  D   L+   + L+ K+   +++L G
Sbjct: 749 EALKNKLARQEAAELLQQAFEVNGVKVLVAEMSGQDMAVLRQNGEMLRDKLGRAVVVL-G 807

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +++ K ++++ V ++L DR +A ++   +AKV+GGGG GGR  MAQ+GG    K  +A+
Sbjct: 808 SARDGKVNLVVFVAKELTDRLHAGEIVSAAAKVVGGGG-GGRADMAQAGGKIPEKLGEAL 866

Query: 890 AGVASFLK 897
               + ++
Sbjct: 867 QEARAKIE 874


>gi|254513877|ref|ZP_05125938.1| alanyl-tRNA synthetase [gamma proteobacterium NOR5-3]
 gi|219676120|gb|EED32485.1| alanyl-tRNA synthetase [gamma proteobacterium NOR5-3]
          Length = 867

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/903 (41%), Positives = 536/903 (59%), Gaps = 46/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL +F+ + H+ +PSSSL+P +DPTL+FTN+GM  FK++F G E   Y   
Sbjct: 1   MKTGEIREAFLAYFESHDHQRVPSSSLVPADDPTLLFTNAGMNQFKDVFLGAESRPYHRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI+ AWD LT E  L 
Sbjct: 61  VSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKSQAIRFAWDFLTVELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++TV+  D+EA ++W +  G  A++I R+   DNFW M +TGPCGPCSE+F+D GE
Sbjct: 121 KERLWVTVHLSDDEAERIWIEEIGFPAERISRL-DEDNFWQMGDTGPCGPCSEVFYDHGE 179

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS ++  +RYIEIWNLVFMQ+ +    +   LPK S+DTGMGLER+A +LQ  
Sbjct: 180 DVPGGPPGSPDDDLDRYIEIWNLVFMQYNRSADGQMTPLPKPSVDTGMGLERIAAILQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID+F+ LI A+ +V G         + RVI DH+RSS+FLI DG+LP NEGR YV
Sbjct: 240 HSNYEIDVFQALIAAAAEVVGATD--LEASSLRVIADHIRSSAFLIIDGVLPGNEGRSYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRA+ +   LG TE     L+  L  +MG  YPEL   +  IEE +R E+E+F +
Sbjct: 298 LRRIMRRAIRHGNKLGATELFFSKLVAPLAAQMGDFYPELRAQQARIEEVIRGEEEQFAR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++G+ +LD  L+ L   +++ GDV FKLYDT+G P+D+  DI   R  + +D+  + +
Sbjct: 358 TLEQGMEILDEALADLQ-GDVIPGDVVFKLYDTYGFPVDLTNDIARERNFS-LDMAGYER 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A++ QR R++        G     + S     G T F GY+ + G               
Sbjct: 416 AMQVQRERSKEG------GGFSVDYNSTLTLEGETVFTGYEHVAG--------------- 454

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S+ V A+++  E V +   G+   V+ DQTPFY E+GGQ GDTG     G+ 
Sbjct: 455 --------SAQVVALLRDAEQVMQLAEGESGVVILDQTPFYGESGGQAGDTGYLSAQGLS 506

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           L++TD  K      +HH  V +G +    +L   ID + R+   +NHSATHLLH AL   
Sbjct: 507 LEVTDTTKAQGH-HLHHVKVLQGTVSVGDTLDCRIDNEVRQNTRLNHSATHLLHAALRNE 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +    LRFD ++ + ++  +L+++ED+VN  I  N  V T++M  +DA 
Sbjct: 566 LGDHVTQKGSLVDAQRLRFDFSNPEAMSDEQLRAVEDSVNAQIRANTDVHTQLMTMDDAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY D VRV+S+        S  LCGGTHV  TG+I LL I+SE  + +GI
Sbjct: 626 NAGAMALFGEKYGDEVRVLSMGQ---DGFSVELCGGTHVQRTGDIGLLRIISEGGLASGI 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A +H+   D  L  +   ++ +  NV  +V  +    R L+   A+ K +
Sbjct: 683 RRIEAVTGANALAHMRSVDGALAGVCDAVRGTTDNVADKVAALRSANRDLEKELARLKQK 742

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S  ++  +  ++  +   D   L+ +MD  + K+ S +I+L  +  + K
Sbjct: 743 LASSAGSDITASAIEVDGIKVLATAVDGADPGALRGIMDQCKSKLGSAVILLAAV-NDDK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            +++  VT+DL +R  A DL +  A  LGG G GGRP MAQ GG        A+  V ++
Sbjct: 802 VALVAGVTKDLTERVRAGDLMKEFAGRLGGKG-GGRPDMAQGGGTEPALLSAALEDVPAW 860

Query: 896 LKK 898
           + +
Sbjct: 861 VAQ 863


>gi|114707288|ref|ZP_01440185.1| alanyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114537169|gb|EAU40296.1| alanyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 912

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/910 (52%), Positives = 634/910 (69%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F KNGHE + SS L+P NDPTLMF N+GMV FKN+FTG+EK  Y  
Sbjct: 22  MSGVNEIRSAFLDYFAKNGHEKVSSSPLVPRNDPTLMFVNAGMVQFKNVFTGEEKRSYSR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW L+TK+F L
Sbjct: 82  AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWSLITKDFGL 141

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY ED+EA  LWKKI+GLS D+IIRI T+DNFW+M ETGPCGPCSEIFFD G
Sbjct: 142 PRDKLLVTVYSEDDEAAGLWKKIAGLSDDRIIRIGTSDNFWTMGETGPCGPCSEIFFDHG 201

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E IPGG P   +E+G+R+IEIWNLVFMQ+EQ    ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 202 EDIPGGPPGSPNEDGDRFIEIWNLVFMQYEQLAGDERLDLPRPSIDTGMGLERIAAVLQG 261

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI A E   G + EG  + +HRVI DHLRS++FLIADG+LP+NEGRGY
Sbjct: 262 VHDNYDIDLFRTLIAAVENAIGSRAEGAAVASHRVIADHLRSTAFLIADGVLPSNEGRGY 321

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +ARLLG  EP++  LLP L  EMG AYPEL++ + LI ETL+ E++RF 
Sbjct: 322 VLRRIMRRAMRHARLLGAGEPVLYKLLPTLIAEMGRAYPELVRGEALIAETLKLEEKRFL 381

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LL      +G  + L+G+ AFKLYDT+G PLD+ QD L  RG   +D+ +FN
Sbjct: 382 QTLDRGLSLLADATEGMGAGQKLSGETAFKLYDTYGFPLDLTQDALRQRG-IAVDLDAFN 440

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ AR    G G   TEK+WF ++++ GAT+F+GYD                  
Sbjct: 441 TAMERQKAEARKSWAGSGEAATEKVWFPIRDRVGATEFLGYD------------------ 482

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T   S  V A+VQ G  V+ A +G+KV VV +QTPFY E+GGQLGD G       
Sbjct: 483 -----TEEASGSVVALVQDGAEVKSATAGEKVFVVVNQTPFYGESGGQLGDAGVMTDGET 537

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I D QK A+G+FVH  IV+ G +  + +L L ++++ R ++  NHSATHLLH  L  
Sbjct: 538 VIEIEDTQKLADGLFVHRGIVKSGEVSVDDALDLKVEHRRRSKIRSNHSATHLLHEGLRE 597

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFD +H KP+  AE++++E   N I+ QN PV TR+M  ++A
Sbjct: 598 VLGTHVAQKGSLVAPERLRFDFSHPKPMDRAEIEAVERLANGIVRQNAPVETRLMAVDEA 657

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I SGA AL G KY D VRVVS+       + G  +S+ LCGGTHVS+TGEI ++++V ES
Sbjct: 658 IESGAMALFGEKYGDEVRVVSMGTAQEGKKAGKPYSTELCGGTHVSATGEIGVVHVVGES 717

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR +L  QD++++ +A+ LK S  + + R+E + EE R+L+   
Sbjct: 718 AVGAGVRRIEALTGEAARDYLREQDQRVRKMAALLKASPEDALARLETVVEERRRLEREL 777

Query: 775 AKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A+ K +L +      +  S   +  ++++  +I  V  ++LK ++D  +K +QSG++  V
Sbjct: 778 AEVKKRLALAGEGGGKGDSAKTVNGISYLGRVIDGVSGRDLKGLVDEAKKSVQSGVVAFV 837

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++ E KASV++ VTEDL  RF+AV L R ++  +GG GGGGRP MAQ+GGP+ + A  A
Sbjct: 838 GVA-EGKASVVVGVTEDLTARFDAVTLVRTASGAIGGKGGGGRPDMAQAGGPDADNAAGA 896

Query: 889 IAGVASFLKK 898
           IA V   L++
Sbjct: 897 IAAVEKALQE 906


>gi|167855110|ref|ZP_02477882.1| alanyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|167853745|gb|EDS24987.1| alanyl-tRNA synthetase [Haemophilus parasuis 29755]
          Length = 853

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/890 (40%), Positives = 543/890 (61%), Gaps = 55/890 (6%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           +PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T+ Q+CVRAGGKHNDL+NVG 
Sbjct: 1   MPSSSLVPENDPTLLFTNAGMNQFKDVFLGLDKRSYNRATSSQRCVRAGGKHNDLENVGY 60

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLW 140
           T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +   L + +L++TVY+ D+EA+ +W
Sbjct: 61  TARHHTFFEMLGNFSFGDYFKPDAIAFAWEFLTSPQWLALPKEKLWVTVYETDDEAYDIW 120

Query: 141 KKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-E 192
            +  G+ A++I+RI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS+ E
Sbjct: 121 NREIGVPAERIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSAEE 180

Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
           +G+R+IE+WN+VFMQF +Q       LPK S+DTGMGLER++ VLQ   +NY+ID+F+ L
Sbjct: 181 DGDRFIEVWNVVFMQFNRQADGTLKKLPKPSVDTGMGLERISAVLQHVNSNYEIDIFQAL 240

Query: 253 IQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           I+    +  +     +  + RVI DH+RS ++LIADG++P+NEGRGYVLRRI+RRA+ + 
Sbjct: 241 IKEIASLLNVTD--LDNKSLRVIADHIRSCAYLIADGVMPSNEGRGYVLRRIIRRAVRHG 298

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
            +LG        L+P L   MG A   L Q +  I++ L++E+++F +TL+RGL LL+  
Sbjct: 299 NILGAKSAFFYQLVPTLAKAMGQAGEILTQKQAHIQKALKAEEDQFARTLERGLALLEDA 358

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           L+ +  +++L+G+VAFKLYDT+G PLD+  D+   RG+  ID  SF + ++ QR+RA+A 
Sbjct: 359 LAKVE-NKVLSGEVAFKLYDTYGFPLDLTADVCRERGIT-IDEASFEREMQAQRARAQAS 416

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           S           +  + +  G+T+F GY++                           + V
Sbjct: 417 SNFG------TDYNYVIKVDGSTEFKGYEVTE-----------------------CEATV 447

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
            A+   G+ VE   SG+   VV D+T FY E+GGQ+GD+G    +    ++ D QK    
Sbjct: 448 VALFSNGKAVEAIQSGENAVVVLDRTAFYGESGGQVGDSGVIASEICNFEVNDTQKYG-Q 506

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           +F H   +  G L     +   ++   R  +++NHSATHLLH AL  +LG HV+Q GS +
Sbjct: 507 VFGHIGQLASGTLSVGDKVKAEVNTTRRHAITLNHSATHLLHSALRQVLGDHVAQKGSLV 566

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           + + LRFD +  + I+ A+L+ IE  +N  I +N+ V T +M+ E A   GA AL G KY
Sbjct: 567 SENSLRFDFSQGEAISKADLEEIERIINTKIRENIVVTTEVMDLESAKQKGAMALFGEKY 626

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            DRVRVV +        S  LCGGTHV  TGEI L  +VSE ++ AG+RRIEA+TG+ A 
Sbjct: 627 GDRVRVVDIT----AAFSVELCGGTHVKQTGEIGLFKVVSEGAVAAGVRRIEAVTGENAI 682

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLS 787
             L  Q + L   A  LK    ++V +++++ E+ +K++    + K +L  +        
Sbjct: 683 GLLHQQQQILNQSAELLKADTASLVEKIQQLQEKSKKVEKELQQLKDKLAAQAGGELAKQ 742

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             +I  VN +   +  VD+K L++++D L+ ++ S +I+      ++K ++++ VT+DL 
Sbjct: 743 AQQINGVNVVVQRLENVDAKALRTMVDDLKNQLGSAVIV-FATQTDEKVNLIVGVTKDLT 801

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           D+ NA +L  L A+ + GG GGGR  MA +GG       QA+    ++++
Sbjct: 802 DKVNAGELVGLMAQEV-GGKGGGRADMAMAGGSQPENITQALNVATNWIQ 850


>gi|120598090|ref|YP_962664.1| alanyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|146293839|ref|YP_001184263.1| alanyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|120558183|gb|ABM24110.1| alanyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|145565529|gb|ABP76464.1| alanyl-tRNA synthetase [Shewanella putrefaciens CN-32]
          Length = 892

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/909 (41%), Positives = 551/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 22  TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 81

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI   W  LT+   L +
Sbjct: 82  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAICFGWSFLTETLKLPK 141

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 142 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 201

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +    E   LPK S+DTGMG+ER+A
Sbjct: 202 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRHISGEMLPLPKPSVDTGMGIERIA 261

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+     +  + RVI DH+RS +FL+ADG++P+N
Sbjct: 262 AIMQGVHSNYEIDIFRALIAKAAEIIGVTD--LSNKSLRVIADHIRSCAFLVADGVMPSN 319

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + ++++E+ L++E
Sbjct: 320 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 379

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L   + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 380 EEQFARTLERGLGILDAALSELT-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 437

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 438 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYTELVG--------- 482

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  +V D TPFYAE+GGQ+GD G  
Sbjct: 483 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 528

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +GI   + D QK  +       ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 529 VANGIEFTVNDTQKYGQATGHQ-GVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 587

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 588 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKKVEELVNTQIRRNHELKVAEM 647

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 648 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 702

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 703 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 762

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L     +        +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 763 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL-G 821

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 822 TAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 880

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 881 AQVLPWITE 889


>gi|320155348|ref|YP_004187727.1| alanyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319930660|gb|ADV85524.1| alanyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
          Length = 860

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/906 (41%), Positives = 541/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W +  G+ AD+IIRI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ ++ G +    +  + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEIVGCED--LSNQSLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G       
Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNAKIKTESETEFCGYTGTQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S+V  I  +GE  +   +G K  ++  +TPFYAE+GGQ GD+G
Sbjct: 466 ----------------NSVVAEIFVEGEAADSLSAGDKAIIILGETPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    Q+ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFQVEDTQKLGN-AIAHHGVLVEGVLAKGDQVSAIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHAIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q       A   +    +   + + + +E ++L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALEAIDAQ-------ARKFEEKLQDAANKAKSLEKEIQQLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A +     ++     +IA V  +   +   D+K L+ ++D L+ ++ SGIIML  ++ 
Sbjct: 737 KLASQASANLIDQ--VKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIMLGNVA- 793

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG + +    A+A V
Sbjct: 794 DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSALASV 852

Query: 893 ASFLKK 898
            +++ +
Sbjct: 853 DAWIAE 858


>gi|116749953|ref|YP_846640.1| alanyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|205830235|sp|A0LLA3|SYA_SYNFM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116699017|gb|ABK18205.1| alanyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 885

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/916 (40%), Positives = 525/916 (57%), Gaps = 52/916 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF + GH ++ SSS+IP +DP+L+FTN+GMV FK  F G+EK  Y   
Sbjct: 1   MKASEIRKAFLDFFAQRGHSVVKSSSVIPHDDPSLLFTNAGMVQFKRTFLGEEKRPYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+RAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE A++ AW  LT++  L 
Sbjct: 61  ATSQKCMRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAVEYAWRFLTEDMGLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + +LY T+++         DEEA   W +   L AD+I+   T DNFWSM +TGPCGPCS
Sbjct: 121 REKLYATIHEGDSEMRLGPDEEARGFWARY--LPADRILTFPTKDNFWSMGDTGPCGPCS 178

Query: 174 EIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           EI  DQG  +  G P      + +R++E+WNLVFMQF ++       LPK SIDTGMGLE
Sbjct: 179 EILIDQGAHVGCGKPDCRPGCDCDRFLELWNLVFMQFNRKEDGTMEPLPKPSIDTGMGLE 238

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           R+A V+Q+  +NYD DLF  +     +++G +Y  +    V+ +VI DH R+++FLI DG
Sbjct: 239 RVAAVIQKVPSNYDTDLFAPMRAKIAELSGYRYGTDPEKDVSVKVIADHGRAAAFLIGDG 298

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ + R LG   P +  +  A+   M  AYPEL++++  I  
Sbjct: 299 ALPSNEGRGYVLRRVLRRALRHGRFLGLDRPFLSEVAVAVMESMQDAYPELLESRNFITR 358

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + +E+ERF +TLD GL LL   +  L  +    + G + FKLYDT+G P+DI+ D+   
Sbjct: 359 VILNEEERFNETLDNGLRLLQNEIRRLRDEGAGTIPGALIFKLYDTYGFPIDIITDMARD 418

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
                +D   F   +E+Q+ ++R H  G G     + +  L  +  +T+F+GYD L    
Sbjct: 419 LDFK-VDEAGFADLMEKQKEQSRMHWKGSGEREVSEAYRQLSAEGVSTRFVGYDTL---- 473

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S + A+V+ G+ VEEA +G  VEVV  +TPFY  AGGQ
Sbjct: 474 -------------------SAQSTIAALVRDGQAVEEAPAGTDVEVVTSETPFYGAAGGQ 514

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G  +G   R+ ++D  K    + VH   VE G LR   ++ L +D   R   +++H
Sbjct: 515 VGDQGVIVGPSSRVIVSDTLKLPGDLIVHVGKVESGRLRVGETVRLEVDQALRGDTALHH 574

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH  L  +LG HV Q GS + PD LRFD TH   I+  EL  IE  VN+ I  N 
Sbjct: 575 TATHLLHSVLRRVLGDHVKQAGSMVAPDRLRFDFTHFAAISRDELAEIERLVNEQIRVNR 634

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            +  R MN ++A+ +GA AL   KY DRVR+V +        S  LCGGTH   TG+I L
Sbjct: 635 DLQVREMNLDEALKTGAMALFEEKYGDRVRMVEIPG-----FSRELCGGTHTHRTGDIGL 689

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             +  E SI +G+RRIEA+ G+RA  +L  Q   L   A  LK     V  RVE++    
Sbjct: 690 FVVTQEMSIASGVRRIEALAGRRALDYLGRQQSVLHQAAGLLKAGPFEVAERVEKLLANQ 749

Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++++      K  L  +  +       ++  V  +   +   D K L+ + D  ++++ S
Sbjct: 750 KQMEKELEALKSSLTSKRSADLLEQAEEVGGVKVLVMRVEADDPKALREMNDRFKERLSS 809

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ +L G  +  KA +L+ VT DL  R +A +L +   K + GG GGGRP MAQ+GG   
Sbjct: 810 GVTVL-GAHQGDKAFLLVGVTPDLTSRVHAGNLIKEIVKTI-GGSGGGRPDMAQAGGNRP 867

Query: 883 NKADQAIAGVASFLKK 898
            K   A+      L++
Sbjct: 868 EKLQDALDLARKLLRE 883


>gi|34497059|ref|NP_901274.1| alanyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|41018171|sp|Q7NXM2|SYA_CHRVO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|34330326|gb|AAQ59280.2| alanyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 877

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/914 (42%), Positives = 530/914 (57%), Gaps = 60/914 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF   GH+++PSSSLIP NDPTLMFT +GMV FK++F G EK  Y   
Sbjct: 1   MKTSEIRKKFLDFFASKGHQVVPSSSLIPGNDPTLMFTVAGMVQFKDVFLGFEKRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +   
Sbjct: 61  TTSQKCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWEFLTGEQWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L +TVY  D+EA+ +W +  GL ADKI+RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLMVTVYATDDEAYDIWHQTVGLPADKIVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G  + GG P    E+G+R++EIWN VFMQF +        LPK S+DTGMGLE
Sbjct: 181 TEIFFDHGPSVAGGPPGSPDEDGDRFMEIWNNVFMQFNRDEAGTLHPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++TVLQ   +NY+ D    L++A+ + TG++Y   ++ + +VI DH+R+ SF++ADGIL
Sbjct: 241 RLSTVLQHVKSNYETDALACLVRAAARETGVEY-SQDVPSLKVIADHIRACSFMVADGIL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI RRA+ +   LG        ++  L  EMG AYPEL + +  IE+ L
Sbjct: 300 PSNEGRGYVLRRIARRAIRHGYKLGQKGLFFHKIVADLVAEMGEAYPELREKQAHIEDAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R+E+ +F +TL+ G+ L+D  L   G    L+GD  FKLYDT G P+D+  DI   RG+ 
Sbjct: 360 RAEEIKFAETLEIGMGLVDSALE--GGKTALDGDTIFKLYDTFGFPVDLTADICRERGIH 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D+  F +A+E QR R RA S    SG        +      T+F GYD          
Sbjct: 418 A-DLEGFERAMEAQRERGRAGSNFKMSG-------KIAYDGEDTRFHGYD---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         + V + V A+ +  + V+   +G +  VV D T FYAE GGQ+GD 
Sbjct: 460 -------------KSSVEAKVLALYKGTDPVDSLSAGDEGIVVLDGTAFYAEGGGQVGDV 506

Query: 532 GCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G     G       + D QK     F H   + RG L+   ++  TID   R+  + NHS
Sbjct: 507 GEISAAGGIAALFDVADTQKIQGAAFGHKGKLARGALKVGDAVTATIDLHQRQASARNHS 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV Q GS + P+  RFD  H + +T+A++  +E  VN +IA N  
Sbjct: 567 ATHLLHAALRHVLGGHVVQKGSLVNPERTRFDFAHGEAVTAAQIAELERVVNHVIAANYE 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +M+ E A  SGA  L G KY D VRV+++     G  S+ LCGGTHV  TG+I L 
Sbjct: 627 VKAELMSMEAAQKSGAMMLFGEKYGDEVRVLTM-----GDFSAELCGGTHVKRTGDIGLF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEY 767
            IV+E  + AG+RRIEA+TG+ A +++  QD  +K  A+ LK      V+ ++  + +  
Sbjct: 682 KIVAEGGVAAGVRRIEAVTGEGALAYIQAQDALIKEAAAALKAQTSDEVLAKIAALQDSA 741

Query: 768 RKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L+   AK K QL          +   I  V  ++  +   D+  L+  +D L+ K+ S
Sbjct: 742 KALEKELAKLKGQLASSAGDSLADAAADINGVKVLAAELPGADNTALRETLDKLKDKLGS 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             I+L     + K +++  VT DL  +  A +L    A+ + GG GGGRP MAQ+GG   
Sbjct: 802 AAIVLAA-KGDGKVALVAGVTADLTGKLKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQP 859

Query: 883 NKADQAIAGVASFL 896
              D A+ GV +++
Sbjct: 860 ENLDAALNGVQAWV 873


>gi|260752686|ref|YP_003225579.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552049|gb|ACV74995.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 890

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/914 (49%), Positives = 593/914 (64%), Gaps = 41/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E   Y+ 
Sbjct: 1   MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D  RL +TVY  DEEAF LW+KI+GL  D+II+I T+DNFWSM +TGPCGPCSEIF+D  
Sbjct: 121 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+R++EIWNLVFMQ+EQ N + R  LP+ SIDTGMGLER+A+VLQ 
Sbjct: 181 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T    +G    +HRVI DHLR++ FL+ADG+LPANEGRGY
Sbjct: 241 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G  EPLM  L+PAL +EMG AYPEL++AK LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL +L+    HL   + L G+VAF+LYDT+G P D+  D L AR L  +D   F+
Sbjct: 361 QTLANGLKILEDETQHLKSGDTLPGEVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR  ARA   G G   +++IWF + ++ G T+F GY                   
Sbjct: 420 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYT------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  + A+++ G+ VE A  G  + ++ +QTPFY E+GGQ GD G   G+  
Sbjct: 462 -----AEKGSGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITGNND 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++ +TD QK    I  H A +E+G ++    + L +D  +R +L  NHSATHLLH AL 
Sbjct: 517 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HVSQ GS ++ + LRFD +H K ++  EL +IE  VN  I  N  V TR+M  E 
Sbjct: 577 DQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMTPES 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           A+ +GA AL G KY + VRV+S+        +    S  LCGGTHVS+ G+I L +IVSE
Sbjct: 637 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +++ +GIRRIEA+TG+ AR  L+G+D  L+  AS LK     V  R   I +E RK +  
Sbjct: 697 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 756

Query: 774 HAKRKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            A  +  L + + +           K+    F+  +I  +D K L+ ++D  +K I+SG+
Sbjct: 757 LADAQKALALANANGGQGSNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I L+ +  E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+
Sbjct: 817 IALITV-NEGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 875

Query: 885 ADQAIAGVASFLKK 898
           A QA+  V + L+K
Sbjct: 876 AAQALEAVKALLEK 889


>gi|82701157|ref|YP_410723.1| alanyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|123545319|sp|Q2YD40|SYA_NITMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|82409222|gb|ABB73331.1| alanyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 862

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/903 (41%), Positives = 532/903 (58%), Gaps = 49/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FLEFF+ +GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K  Y   
Sbjct: 1   MKSSEVRQKFLEFFETHGHTIVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT    + 
Sbjct: 61  ASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRNAIRFAWEFLTDILKIP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-G 180
           + RL+ITVY ED+EA  +W    G+ + +  RI T DNFW M +TGPCGPCSEIF+D   
Sbjct: 121 RERLWITVYAEDDEAADIWLNEVGIDSSRFTRIATQDNFWQMGDTGPCGPCSEIFYDHGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E   G     + +G+RY+EIWNLVFMQ+ + +      LP+ S+DTGMGLER++ V+Q+ 
Sbjct: 181 EIPGGPPGTPNADGDRYVEIWNLVFMQYNRDSAGTLHPLPRPSVDTGMGLERISAVMQQV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI+A+ + T       +  +  VI DH+R+ SFLIADG++P NEGRGYV
Sbjct: 241 HSNYEIDLFQQLIKAAARATNTTD--LSSSSLNVIADHIRACSFLIADGVIPGNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +P    L+  L + MG AYPEL++AK  +   L+ E+ERF +
Sbjct: 299 LRRIIRRAIRHGYKLGQKQPFFHQLVEDLASVMGQAYPELMEAKTRVSAVLKQEEERFAE 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+ G+ +L+  L     D +L+G+  F+LYDT G PLD+  DI   RG   ID   F+Q
Sbjct: 359 TLENGMQVLEAALRR--GDRMLDGETLFRLYDTFGFPLDLTADIARERG-IAIDEAGFDQ 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E+QR RAR  S  +           +     +T F GY+ LR                
Sbjct: 416 AMEQQRERARTTSKFIMQEA-------IAYSGPSTTFHGYESLRQ--------------- 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      V AI ++G  VE   +G +  +V D+TPFYAE+GGQ+GD+G  +     
Sbjct: 454 --------EGQVLAIYKEGSRVEFIEAGDEAVIVLDKTPFYAESGGQVGDSGELLAANGT 505

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             + D QK    +F H  ++  G L T  +++  +D   R +   NHS THL+H AL  +
Sbjct: 506 FAVADTQKIQADVFGHKGLLRSGRLATGDAVLAEVDRAARARTERNHSVTHLMHKALREV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS +  +  RFD  H++P+T AE++ +E  VN  I  N     R+M  EDA 
Sbjct: 566 LGHHVQQKGSLVDANKTRFDFAHNQPVTDAEIRKVEMLVNAEILANAATEARMMAIEDAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA  L G KY+D VRV+ +        S  LCGGTHV  TG+I L  IV+ES + AG+
Sbjct: 626 KSGAMMLFGEKYSDEVRVLDIG------TSRELCGGTHVKRTGDIGLFKIVAESGVAAGV 679

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RR+EA+TG+RA +++  Q+ +L+ +A+ +K    +   R+ +I +  + L+    + K +
Sbjct: 680 RRVEAVTGERALTYIQEQELQLQRVAAAVKAQPQDAAARITQILDNVKHLERELGRMKSK 739

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L             +I  V  ++  + E D K L+  +D  + K +S + +L  + ++ K
Sbjct: 740 LASSQGDDFADRVREIKGVKVLAVCLEEADPKTLREAVDKFKNKFKSCVTVLAAV-EDGK 798

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT DL  R  A DL    A+ + GG GGGR  +AQ+GG   +    A+  VAS+
Sbjct: 799 VKLIAGVTSDLTARLKAGDLVNFVAQQV-GGKGGGRADLAQAGGTVPDSLPAALESVASW 857

Query: 896 LKK 898
           +++
Sbjct: 858 VEQ 860


>gi|205830244|sp|A1RHG5|SYA_SHESW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830245|sp|A4Y931|SYA_SHEPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/909 (41%), Positives = 551/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI   W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAICFGWSFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +    E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRHISGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+     +  + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTD--LSNKSLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L   + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALSELT-GDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYTELVG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  +V D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +GI   + D QK  +       ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGIEFTVNDTQKYGQATGHQ-GVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKKVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 744

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L     +        +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|37680987|ref|NP_935596.1| alanyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|41018162|sp|Q7MHR6|SYA_VIBVY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|37199737|dbj|BAC95567.1| alanyl-tRNA synthetase [Vibrio vulnificus YJ016]
          Length = 860

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/906 (41%), Positives = 538/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W +  G+ AD+IIRI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ ++ G +    +  + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEIVGCED--LSNQSLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    ++F GY   +        
Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNAKIKVDAQSEFCGYTSTQER------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +GE      +G K  V+  +TPFYAE+GGQ GD+G
Sbjct: 467 -----------------SDVVALFVEGEETATLSAGDKAIVILQETPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    Q+ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFQVEDTQKLGN-AIAHHGVLVEGVLAKGDQVTAIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q       A   +    +   + + + +E ++L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALEAIDAQ-------ARKFEEKLQDAANKAKSLEKEIQQLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A +     ++     +IA V  +   +   D+K L+ ++D L+ ++ SGIIML  ++ 
Sbjct: 737 KLASQASANLIDQ--VKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIMLGNVA- 793

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG + +    A+A V
Sbjct: 794 DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSALASV 852

Query: 893 ASFLKK 898
            +++ +
Sbjct: 853 DAWIAE 858


>gi|148553432|ref|YP_001261014.1| alanyl-tRNA synthetase [Sphingomonas wittichii RW1]
 gi|205830213|sp|A5V3L0|SYA_SPHWW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148498622|gb|ABQ66876.1| alanyl-tRNA synthetase [Sphingomonas wittichii RW1]
          Length = 887

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/896 (49%), Positives = 584/896 (65%), Gaps = 38/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL+ F K GHEL+PS+ L+P NDPTLMF N+GMVPFKN+FTG EK  Y  
Sbjct: 1   MTSTNDIRRSFLDHFAKEGHELVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI LAW L+T  + +
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAISLAWSLITGTWGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TV+  D+EAF LWKK  G+   +IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PADRLTVTVFHTDDEAFDLWKK-IGMPDSRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 179

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             IPGG P    E+G+R++EIWNLVFMQ+EQ +K+ R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 180 AHIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVDKETRIDLPRPSIDTGMGLERIAAVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T     G+   +HRVI DHLR+S FL+ADG+LPANEGRGY
Sbjct: 240 VHDNYDTDTFKALIAASGELTRTATNGDFKASHRVIADHLRASGFLVADGVLPANEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L+P+L  EMG+AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAAEPLMHRLVPSLVAEMGAAYPELVRAQPLIEETLKLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL LLD     +   ++L G VAFKLYDT G P D+ +D L A+ L G+D   F+
Sbjct: 360 QTLANGLRLLDEATGAMKPGDVLPGAVAFKLYDTFGFPYDLTEDALRAQDL-GVDRSGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ++ ARA   G G   ++++WF + E++G T+F GY                   
Sbjct: 419 AAMAEQKAAARAAWKGSGEKASDEVWFDIAEEFGGTEFTGY------------------- 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
               ++      + AIV+ G+ V EA +G +V +V +QTPFY E+GGQ+GD G   GD  
Sbjct: 460 ----VSEEGDGQLLAIVKDGQRVAEAKAGDEVVLVTNQTPFYGESGGQMGDAGRITGDDG 515

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + + D  K    +  H   V  G +RT  +L L +D   R ++  NHSATHLLH AL 
Sbjct: 516 LEIAVEDTAKPLGRVHAHRGTVVSGSVRTGDALHLVVDGDRRTRIRANHSATHLLHAALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LGSHV+Q GS +  D  RFD +H K +T  ++ +IE  VN  I +N  V TR+M  + 
Sbjct: 576 NRLGSHVTQKGSLVAADRFRFDFSHPKALTPEDIAAIEAEVNRHIRENDEVTTRLMTPDA 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           AI +GA AL G KY D VRV+S+           +S  LCGGTHVS+ G+I L  I+SES
Sbjct: 636 AIEAGAMALFGEKYGDEVRVLSMGKAGRDLGAKSYSVELCGGTHVSALGDIALFKIISES 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ +G+RRIEA+TG+ AR  L  +DEKLK  A+ LK +  +V  R+  + EE RKL+   
Sbjct: 696 AVSSGVRRIEALTGEAARQWLTQRDEKLKEAAAALKTAPDDVPARIAVLVEERRKLEREL 755

Query: 775 AKRKLQLN------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A+ K  L        E      +A V F+  ++  +D K L+ ++D  +  + SG+ ++V
Sbjct: 756 AEAKKALALGGGSKAEAAGPEDVAGVKFLPQVVDGLDPKGLRGLVDDAKASLGSGVSVIV 815

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            +  + +ASV   VT DL+DR +AVDL + +   LGG GGGGRP MAQ GGP+G+K
Sbjct: 816 AV-NDGRASVAAGVTADLVDRISAVDLVKAAVAALGGQGGGGRPDMAQGGGPDGDK 870


>gi|291279844|ref|YP_003496679.1| alanyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290754546|dbj|BAI80923.1| alanyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 871

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/904 (40%), Positives = 540/904 (59%), Gaps = 42/904 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL++F+  GH  +PSSSL+P NDPTL+FTN+GM  FK++F G+EK  Y   
Sbjct: 1   MTGKEIREKFLKYFESKGHTRVPSSSLVPHNDPTLLFTNAGMNQFKDVFLGREKRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QK VRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE +L 
Sbjct: 61  CSCQKVVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEYAWEFLTKEINLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LYITVY +D+EAF++W K  G+ AD+I R+   DNFW+M +TGPCGPCSEI  DQG 
Sbjct: 121 ADKLYITVYKDDDEAFEIWNKHIGVPADRIYRMDEKDNFWAMGDTGPCGPCSEILIDQGP 180

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            I  G        + +R++E+WNLVFMQ+ +    +   LPK SIDTGMGLER+  V+Q+
Sbjct: 181 EIGCGRADCDPYCDCDRHLELWNLVFMQYNRDESGKLNPLPKPSIDTGMGLERVTAVVQK 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +N+D DL K +I+ + +++   Y     +  + RVI DH R+++FLI+DG+LP+NEGR
Sbjct: 241 VPSNFDTDLIKPIIEYAAKLSNKNYGDNEKDDTSLRVIADHARATTFLISDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRAM + ++LG+ E     +   +C  M   Y EL+  K  + + ++ E+ER
Sbjct: 301 GYVLRRIMRRAMRHGKMLGFKESFFYQVCEFVCDFMNDPYIELMDKKSYVSKVVKFEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL+ GL + + +L    +++ + G   F+LYDT+G P+D++QDI+   G   +D++ 
Sbjct: 361 FNKTLETGLKIAEELLEKYKENKEIPGFEIFRLYDTYGFPVDLLQDIMEDNGYK-LDLVG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F++ +++Q+ RA+    G G      I+  L+ ++  T+FIGY+  +             
Sbjct: 420 FDEEMKKQQERAKNAWAGSGESFIADIYKKLENQF-KTEFIGYENTKS------------ 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V AIV+     +E     + E++ D+TPFY E+GGQ+GDTG    +
Sbjct: 467 -----------ESSVLAIVKDDNETQEISESSEFELILDKTPFYPESGGQVGDTGKIYNE 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +++ D +K    + VH + +  G ++    +   ID + R+    NH+ATHLLH AL
Sbjct: 516 NCNIEVLDCKKVGN-LIVHKSKLLSGKIKKGDKVTAVIDVEKRKNTERNHTATHLLHKAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS + PD LRFD TH  P+   E+K IE  VN+ I +N+ V   I   E
Sbjct: 575 QMVLGDHVRQAGSLVAPDRLRFDFTHFAPVDDEEIKKIELLVNENIIKNIEVTKTIKPIE 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +AI  GA AL G KY+  VRVV V        S  LCGG HV  TG+I +  IVSE+S+ 
Sbjct: 635 EAIKEGAMALFGEKYDKEVRVVEVPG-----FSKELCGGCHVGRTGDIGIFKIVSEASVA 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+TG  A       +   K  A  LK +  +V  ++ E+ E+ +  Q    K 
Sbjct: 690 AGIRRIEAVTGLEAVKFTQEINSIAKKSALLLKSNINDVPSKITELQEQLKNTQKELTKL 749

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +LN            +I  +  ++  +   +   L++ +D  + KI+SGI+++  ++ 
Sbjct: 750 QDKLNASKAEDILSNVKEINGIKVLAIRMDNTEINALRNFVDMAKAKIKSGIVLVGSVNG 809

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K + L  VT+DL  ++ A D+ +  AK+ GGGG GG+P +AQ+GG N  K D+A+  +
Sbjct: 810 D-KVTFLCGVTKDLTSKYKAGDIVKEIAKITGGGG-GGKPELAQAGGKNPEKIDEALNHI 867

Query: 893 ASFL 896
            + L
Sbjct: 868 YNIL 871


>gi|158424478|ref|YP_001525770.1| alanyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
 gi|205829980|sp|A8ICW8|SYA_AZOC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158331367|dbj|BAF88852.1| alanyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
          Length = 881

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/889 (49%), Positives = 595/889 (66%), Gaps = 33/889 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR++F+++F KNGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSSFIDYFVKNGHEAVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKE+DL
Sbjct: 61  AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEWDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL  TVY +D+ A+ LWKK++GL   +IIRI T+DNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLATVYYDDDVAYDLWKKVAGLPDSRIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG P    E+G+R+IEIWNLVFMQ+EQ    ER  LP+ SIDTGMGLER++ +LQ 
Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQYEQ-LPGERLNLPRPSIDTGMGLERISALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DL + +I   +++T +   G    +HRVI DHLRSS FL+ADG+LP+NEGRGY
Sbjct: 240 THDNYETDLMRAIIAEVQELTNVPSNGPQKASHRVIADHLRSSVFLVADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+P L  EMG AYPE+++A+ L  ETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAQLLGAREPLMHRLVPVLVREMGRAYPEIVRAEALATETLLLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+   + L       G+VAFKLYDT+G PLD+ +D L  RG   ++  +F+
Sbjct: 360 RTLERGLSLLEEESAGLVSGARFPGEVAFKLYDTYGFPLDLTEDALRGRG-IEVEREAFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   T+ +WF ++E+ GAT+F+GYD                  
Sbjct: 419 AAMERQKAEARANWSGSGEAATDTVWFGVREREGATEFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V+A+VQ+G+ V E  +G +  VV +QTPFY E+GGQ+GD+G   G+G+
Sbjct: 461 -----TETAEGAVRALVQEGKEVSELPAGARGFVVLNQTPFYGESGGQVGDSGLVSGEGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  + + QKK   +FVH   V  G L+    L L +D+  R  +  NHSATHLLH AL  
Sbjct: 516 KACVLNTQKKLGDVFVHDVEVTEGTLKIGTPLALEVDHARRSAVRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + PD LRFD +H KP+T+ EL  +ED  N  + +N PV TR+M  +DA
Sbjct: 576 VLGDHVAQKGSLVAPDRLRFDFSHPKPLTADELAQVEDIANTYVLRNEPVETRLMAVDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE--DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +ASGA AL G KY D VRVVS+  +  +G   S  LCGGTHV  TG+I ++ ++++S + 
Sbjct: 636 VASGARALFGEKYGDEVRVVSMGTDSGNGAPFSVELCGGTHVKRTGDIGIVTVLADSGVA 695

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RR+EA+T   AR HL      L++ A  LKVS   V  RV  + EE RKL+   A+ 
Sbjct: 696 AGVRRLEALTATAARRHLNAASTALQTTAGTLKVSTAEVEARVAALVEERRKLERDLAEA 755

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L +        +  ++    ++   IS  D K+LK+++D  + KI SG++ +   + 
Sbjct: 756 RKKLAMGGGGESGPAVIEVNGTRYLRIAISGADPKDLKAIVDEGKTKIGSGVVAVANTAA 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + K ++++ VT DL  +F+A  L R+  +VLGG GGGGRP MAQ GGP+
Sbjct: 816 DGKGALVVGVTADLAGKFDAQKLVRIGVEVLGGKGGGGRPDMAQGGGPD 864


>gi|58040217|ref|YP_192181.1| alanyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|81556989|sp|Q5FQ21|SYA_GLUOX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58002631|gb|AAW61525.1| Alanyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 879

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/903 (47%), Positives = 584/903 (64%), Gaps = 32/903 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR+ FLE+F   GH ++PS+SL+P NDPTL+FTN+GMVPFKN+FTGQE   Y  
Sbjct: 1   MTSTNDIRSAFLEYFGSQGHRIVPSASLVPQNDPTLLFTNAGMVPFKNVFTGQETRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI+ AW LLT++F L
Sbjct: 61  ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWTLLTRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY EDE+A  LWKKI+GLS D+IIRI T+DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLATVYAEDEDAADLWKKIAGLSDDRIIRIGTSDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG P    E+G+R++EIWNLVFMQF  Q    R  LP+ SIDTGMGLER A ++Q 
Sbjct: 181 DSVFGGPPGSPDEDGDRFVEIWNLVFMQFLDQPDGSRDALPRPSIDTGMGLERFAAIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI+AS ++     +G    +HRV+ DHLRS++FLIADG+LP+ EGRGY
Sbjct: 241 KRDNYDTDTMRALIEASAEIMHQDADGPFKASHRVVADHLRSTAFLIADGVLPSKEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  ++G  EP+   LLPAL  +MG+AYPEL+Q + LI +T++ E+ERF 
Sbjct: 301 VLRRIMRRAMRHLHIMGAKEPVFYRLLPALIQQMGAAYPELVQHQALIAQTMKGEEERFT 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             L+RGL LL   L  LG  E L GDVAFKLYDT G PLD+ QD L  +G   +D   F 
Sbjct: 361 ALLERGLTLLSDELDRLGDKEALPGDVAFKLYDTFGFPLDLTQDALREKGRT-VDEAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR RARA  +G G    E +WF  ++K+G ++F+GY                   
Sbjct: 420 TAMAEQRKRARAAWVGSGDAAAETVWFDARDKHGPSEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
               ++    + V+ I +  + +  A +G   V ++ +QTPFY E+GGQ+GD G     G
Sbjct: 461 ----VSEKADAEVQGIFRGNDELASAPAGDDTVAILLNQTPFYGESGGQVGDHGTLTAPG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R++ITD QK+   + VH+  V  G L+  M++   ID+  R  +  +HSATHLLH AL 
Sbjct: 517 VRVEITDTQKRNGDLIVHYGKVVEGTLKPGMAVHAEIDHARRTAVRGHHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +G+HV+Q GS   P+ LRFD++  +P+T  EL ++E  VN  I +N PV TR+M +E+
Sbjct: 577 RQIGTHVTQKGSLNAPERLRFDISQPRPLTDEELAAVEAEVNARIRENAPVETRLMTQEE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+A GA AL G KY D VRVVS+   D     +S  LCGGTHV   GEI    IVSES +
Sbjct: 637 AVAEGAMALFGEKYGDEVRVVSMGKGDDDRPAYSIELCGGTHVGRVGEIGPFRIVSESGV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RRIEA+ G  A +  +  + +LK +A  LKV   +   RV  + EE + L  Q+  
Sbjct: 697 SAGVRRIEAVCGLAAEALALETESRLKQIADLLKVPVADAASRVAALLEERKSLTAQVSD 756

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            +RKL       +   I  +   +  + +V  KELK + +++ K+I SG++ L+  S + 
Sbjct: 757 LQRKLATGEGTSATESINGITLSARDLGDVSPKELKGLAESISKQIASGVVALMS-SADG 815

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           + S++I VT+DL DR +AV L R ++ ++GG GGGGRP MAQ+GGPN +  D   A +  
Sbjct: 816 RGSIVIAVTKDLTDRLDAVKLVREASALMGGKGGGGRPDMAQAGGPNADS-DAVFAMLRK 874

Query: 895 FLK 897
            L+
Sbjct: 875 TLE 877


>gi|254465088|ref|ZP_05078499.1| alanyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
 gi|206685996|gb|EDZ46478.1| alanyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
          Length = 883

 Score =  890 bits (2299), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/896 (47%), Positives = 572/896 (63%), Gaps = 39/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F KNGHE++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y+ 
Sbjct: 1   MPTLNDIRSTFLNYFAKNGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVETREYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEFD+
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY  D+EAF++WKK  G+  D+IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 121 PKDRLYTTVYHTDDEAFEIWKK-MGVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGTMVDLDMQSIDTGMGLERIAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLF+ LI+AS   T     G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 240 THDNYETDLFRSLIEASANATNTDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+P+L  +MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 300 VLRRIMRRAMRHASLLGANDPVMHKLVPSLVQKMGAAYPELGQGQALIEETFEQEETRFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD   + LGK ++L G+ AFKLYDT+G PLD+ QD L A+    +D   F+
Sbjct: 360 KTLDRGLKLLDEASAGLGKGDVLPGETAFKLYDTYGFPLDLTQDALRAK-EIEVDTGGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+ ++RA  +GLG     K++F + +  G T F+GY+                  
Sbjct: 419 AAMKAQKEQSRAGGIGLGEAADVKVYFDIVDAAGTTDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + AIV+ G  ++ A  G  V+++ +QTPFY E+GGQ+GD+G     G 
Sbjct: 461 -----TEKAEGQIVAIVKDGAQLQSAAKGDTVQIILNQTPFYGESGGQVGDSGVLTVAGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  KK EG+F+H A V  G +       + +D+  R ++  NHSATHLLH AL  
Sbjct: 516 AARITDT-KKVEGLFLHLAEVTEGEVAVGQGAAMEVDHDRRSKIRANHSATHLLHEALRN 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ EL  +   VND I QN PV TRIM  +DA
Sbjct: 575 ALGEHVAQKGSLNAADRLRFDFSHNKAMSAEELAKVGAEVNDFIRQNTPVSTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              GA AL G KY D VRVVS+         DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRAATGKGHDGDTYSIELCGGTHVKQTGDIGTFVILGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A  HL  +  ++  +A+ LK     V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAAAVEHLEREAGRMAEVAAALKAQPAEVLDRLKAMMDERKALQNE 754

Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  K Q+ +            +    F++  +  V  K+L+ ++D  ++ I SG+I+L+
Sbjct: 755 ISNLKQQIAMGGGSGGGAEAKDVNGKKFLAQALKGVSGKDLRGLIDKHKQNIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
              ++ K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + 
Sbjct: 815 A-EEDGKVAVAAGVTDDLTGEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSG 869


>gi|289662681|ref|ZP_06484262.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669644|ref|ZP_06490719.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 882

 Score =  890 bits (2299), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/909 (42%), Positives = 532/909 (58%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+        + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     EI+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA       G    +   L      T F+GYD             
Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYDAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG   E A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPAERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +       +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A  L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L              +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGAGAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDAVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGYIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|241762269|ref|ZP_04760350.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373172|gb|EER62802.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 930

 Score =  890 bits (2299), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/914 (49%), Positives = 594/914 (64%), Gaps = 41/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E   Y+ 
Sbjct: 41  MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 100

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L
Sbjct: 101 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 160

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D  RL +TVY  DEEAF LW+KI+GL  D+II+I T+DNFWSM +TGPCGPCSEIF+D  
Sbjct: 161 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 220

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+R++EIWNLVFMQ+EQ N + R  LP+ SIDTGMGLER+A+VLQ 
Sbjct: 221 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 280

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T    +G    +HRVI DHLR++ FL+ADG+LPANEGRGY
Sbjct: 281 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 340

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G  EPLM  L+PAL +EMG AYPEL++AK LIEETLR E+ RF 
Sbjct: 341 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 400

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL +L+    HL   + L G+VAF+LYDT+G P D+  D L AR L  +D   F+
Sbjct: 401 QTLANGLKILEDETQHLKSGDTLPGEVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 459

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR  ARA   G G   +++IWF + ++ G T+F GY                   
Sbjct: 460 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYT------------------ 501

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  + A+++ G+ VE A  G  + ++ +QTPFY E+GGQ GD G  IG+  
Sbjct: 502 -----AEKGSGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVIIGNND 556

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++ +TD QK    I  H A +E+G ++    + L +D  +R +L  NHSATHLLH AL 
Sbjct: 557 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 616

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HVSQ GS ++ + LRFD +H K +T  EL +IE  VN  I  N  V TR+M  E 
Sbjct: 617 DQLGQHVSQKGSMVSAERLRFDFSHQKALTDQELAAIEAEVNQQILNNSVVTTRLMTPES 676

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           A+ +GA AL G KY + VRV+S+        +    S  LCGGTHVS+ G+I L +IVSE
Sbjct: 677 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 736

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +++ +GIRRIEA+TG+ AR  L+G+D  L+  AS LK     V  R   I +E RK +  
Sbjct: 737 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 796

Query: 774 HAKRKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            A  +  L + + +           K+    F+  +I  +D K L+ ++D  +K I+SG+
Sbjct: 797 LADAQKALALANANGGQGGNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 856

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I L+ +  E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+
Sbjct: 857 IALITV-NEGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 915

Query: 885 ADQAIAGVASFLKK 898
           A QA+  V + L+K
Sbjct: 916 AAQALEAVKALLEK 929


>gi|119774185|ref|YP_926925.1| alanyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|119766685|gb|ABL99255.1| alanyl-tRNA synthetase [Shewanella amazonensis SB2B]
          Length = 900

 Score =  890 bits (2299), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/909 (42%), Positives = 556/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F++ GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    
Sbjct: 31  TTAALRSAFLEYFRQQGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDCFLGMEKRSYVRAA 90

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT    L +
Sbjct: 91  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWEFLTGTLKLPK 150

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY  D+EAF +W K  G+ A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 151 EKLCVTVYHTDDEAFDIWNKQIGVPAENIIRIGDNKGAPFASDNFWQMGDTGPCGPCTEI 210

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWN+VFMQ+ +Q+      LPK ++DTGMG+ER++
Sbjct: 211 FYDHGEHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQSDGTLDPLPKPAVDTGMGIERIS 270

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+        + RVI DH+RS +FL+ADG++P+N
Sbjct: 271 AIMQGVHSNYEIDIFQKLIAKAAEIIGVSD--LENKSLRVIADHIRSCAFLVADGVMPSN 328

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+     L+P L   MG A  EL   + ++E+ L++E
Sbjct: 329 EGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLIEAMGDAAKELKATQTIVEKALKAE 388

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   + L+G+  FKLYDT+G P+D+  D+   R L  +D
Sbjct: 389 EEQFARTLERGLGMLDAALADLK-GDTLDGETVFKLYDTYGFPVDLTADVCRERNLK-VD 446

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A+ EQRSRA+A       G     + +  +   AT F GY  L           
Sbjct: 447 EEGFNAAMAEQRSRAQAA------GQFSADYNAALKIDTATDFCGYTEL----------- 489

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S V A+ + GE V+ A +G  + VV D TPFYAE+GGQ+GD G  
Sbjct: 490 ------------AAESKVVALYRDGESVDAAEAGAVLVVVLDNTPFYAESGGQVGDKGQL 537

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +G+   + D QK  +GI      +  G ++   SL   +D + R +  +NHS THLLH
Sbjct: 538 LAEGVEFNVADTQKFGQGIGHK-GQLALGSIKVGDSLKAMVDKKLRHRTELNHSVTHLLH 596

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +   ELK++ED VN  I +N  +    M
Sbjct: 597 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKREELKAVEDLVNTQIRRNHELNFAEM 656

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A A GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 657 DIEEAKAKGAMALFGEKYDSKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 711

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ R+L+  +
Sbjct: 712 GIAAGIRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDVASVVAKLKAQLDKARQLEKEN 771

Query: 775 AKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +              +I  V  +   +  V++  L+ + D L++K++SG+++L  
Sbjct: 772 AQLKDKLAAAASADLAGDAQEINGVKVLVKRLEGVEAGALRGLQDELKQKLKSGVVLLAI 831

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S + K +++  VT+DL  +  A +L  + A  + GG GGGRP MAQ+GG    K D A+
Sbjct: 832 GSGD-KVNLIAGVTQDLTGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSEPAKLDGAL 889

Query: 890 AGVASFLKK 898
           A V  +L +
Sbjct: 890 ASVVPWLNE 898


>gi|331006892|ref|ZP_08330140.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330419292|gb|EGG93710.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 877

 Score =  889 bits (2298), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/915 (42%), Positives = 535/915 (58%), Gaps = 58/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + IR  FL FF+ +GH +L SSSL+P NDPTL+FTN+GMV FK++F G +K  YQ  
Sbjct: 1   MNSADIRDAFLRFFETHGHTVLNSSSLVPNNDPTLLFTNAGMVQFKDVFLGSDKRDYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW  LT      
Sbjct: 61  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHYAWTFLTSPDWMG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           +   +L +TVY +D+EA+ LW K  GL A+KII I  N       DNFW+M +TGPCGPC
Sbjct: 121 IPAEKLTVTVYADDQEAYDLWHKDIGLPAEKIIHIGDNKGGKYQSDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GGLP    E+G+R+IEIWN+VFMQF +        LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGEDIWGGLPGTPEEDGDRFIEIWNIVFMQFNRSADGSMAPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ V+Q   NNYDIDLF+HL+ AS  +TG +       + RVI DH+RS +FLI DG++
Sbjct: 241 RISAVMQGVHNNYDIDLFQHLLNASATITGAQ--NTEHKSLRVIADHIRSCAFLIIDGVM 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+ AL   MG+AYPELI+ +  IE+ L
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGHKLGQQQAFFYQLVSALVEIMGTAYPELIKQQKHIEKVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDILCA 407
             E+++F KTL++GL +L+ VL            + G+  F LYDT+G P D+  DI   
Sbjct: 359 LLEEQQFEKTLEKGLSVLESVLDSAEFTASASTQIPGETIFTLYDTYGFPTDLTNDIARE 418

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           R L  +D+  + + +E QR+RARA       G     + S  E  G+TQF GYD + G  
Sbjct: 419 RELT-LDMPGYEKCMEAQRTRARAA------GKFSVDYSSSVELEGSTQFSGYDSVNG-- 469

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                   +  + Q    V+    G +  +V   T FYAE+GGQ
Sbjct: 470 ---------------------EGNIIGLYQNAIPVDTLKEGDEGVIVLSNTSFYAESGGQ 508

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G  + DG   ++ D QK      +H   V  G       +   +D   R+   +NH
Sbjct: 509 IGDSGYIVFDGGHFEVQDCQKNGSH-HLHIGKVLSGEFSVGNGVSTRVDSDVRQATVLNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+H AL  ILG HV Q GS +  + LRFD +H + ++  EL  IE  VND I  N 
Sbjct: 568 SATHLMHAALRKILGEHVVQKGSLVDSEKLRFDFSHLQALSGDELARIETMVNDEIRHNT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     + E A A GA  L   KY D VRV+S+        S  LCGG HV  TG+I +
Sbjct: 628 TVAVDHCDMEQAKAKGAMMLFDEKYGDEVRVLSMGD----GFSIELCGGVHVQQTGDIGV 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
            +IV+ES I +G+RRIEA+TG++A S L+   +    +A  +K +  N V ++E++  + 
Sbjct: 684 FHIVAESGIASGVRRIEAVTGKKALSRLLSYKQSTDQIAQLVKANSSNAVEKIEQLVVQL 743

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++ +   A  + +L   D      +  +IA VN ++H + + D K L+ + DAL+ ++++
Sbjct: 744 KEQEKAIASMQAKLASADSGDLLKNIKQIAGVNVLAHHVVDGDGKILRDMADALKSQLEN 803

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            + +LV  ++  K S+L  VT+DL  +F A DL R  A ++ GG GGGRP MAQ GG + 
Sbjct: 804 SVYLLV-TNQGDKVSLLAGVTKDLTAQFKAGDLMREVAPLV-GGKGGGRPDMAQGGGTDP 861

Query: 883 NKADQAIAGVASFLK 897
                 +  V  +++
Sbjct: 862 TGIQAVLDKVEQWVQ 876


>gi|27364961|ref|NP_760489.1| alanyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|29611879|sp|Q8DC49|SYA_VIBVU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|27361107|gb|AAO10016.1| alanyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 860

 Score =  889 bits (2298), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/906 (41%), Positives = 538/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W +  G+ AD+IIRI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ ++ G +    +  + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEIVGCED--LSNQSLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEAMGSAADELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVAREREFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    ++F GY   +        
Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNAKIKVDAQSEFCGYTSTQER------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +GE      +G K  V+  +TPFYAE+GGQ GD+G
Sbjct: 467 -----------------SDVVALFVEGEETATLSAGDKAIVILQETPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    Q+ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFQVEDTQKLGN-AIAHHGVLVEGVLAKGDQVTAIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHAIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q       A   +    +   + + + +E ++L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALEAIDAQ-------ARKFEEKLQDAANKAKSLEKEIQQLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A +     ++     +IA V  +   +   D+K L+ ++D L+ ++ SGIIML  ++ 
Sbjct: 737 KLASQASANLIDQ--VKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIMLGNVA- 793

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG + +    A+A V
Sbjct: 794 DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSALASV 852

Query: 893 ASFLKK 898
            +++ +
Sbjct: 853 DAWIAE 858


>gi|166712451|ref|ZP_02243658.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 882

 Score =  889 bits (2298), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/909 (42%), Positives = 536/909 (58%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPT 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSTDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+        + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA       G    +   L      T F+GY+             
Sbjct: 423 MEGFECAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGRL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 NGPGVLIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALRDVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +       +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A  L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          +   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGAAAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDCVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVSGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|254510259|ref|ZP_05122326.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221533970|gb|EEE36958.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 890

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/914 (47%), Positives = 564/914 (61%), Gaps = 44/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E   YQ 
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFVNSGMVQFKNLFTGVETRDYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPEAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF++WKK  G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKK-VGVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFEDGAMVELDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   T +   G+  V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKTLIEASADATNVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+P L   MG+ Y EL QA+ LIEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPIMYQLVPTLVQLMGAQYSELGQAQPLIEETLLLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L   + L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELAGLPAGDPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G    + +WF + +  GAT F+GYD                  
Sbjct: 419 AAMAEQKAKARAAWAGSGESADQVVWFDVLDTAGATDFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V  G +V+    G    +V +QTPFY EAGGQ+GDTG       
Sbjct: 461 -----TEKAEGQIAALVVDGVLVDSIEQGGSGWIVVNQTPFYGEAGGQVGDTGEIRRLDA 515

Query: 540 RLQ----ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           R          +     ++ H   V+ G +    ++ L +D+  R  +  NHSATHLLH 
Sbjct: 516 RDDVARVEDTRKFAEGKVYAHKVTVDHGAISKGDAVELEVDHARRTAIRANHSATHLLHE 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS    D LRFD +HSK +T  E+K +E  VN  I QN  V TRIM 
Sbjct: 576 ALRETLGDHVAQRGSLNASDRLRFDFSHSKALTLDEMKKVEREVNAFIRQNSTVETRIMT 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLY 709
            +DA   GA AL G KY D VRVVS+        +DG   S  LCGGTHV  TG+I    
Sbjct: 636 PDDARELGAQALFGEKYGDEVRVVSMGKATTGKGQDGETWSIELCGGTHVRQTGDIGTFV 695

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ +S+  AG+RRIEA+TG  A  +L  QD +L ++A  LK    +VV RV+ + +E + 
Sbjct: 696 VLGDSASSAGVRRIEALTGDEAFKYLSAQDHRLGTIALELKAQPDDVVTRVKSLLDERKA 755

Query: 770 LQLIHAKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           LQ   A+ +  L +              +  V FM+  ++ V  K+L +++D  + ++ S
Sbjct: 756 LQNEVAQLRRDLAMAGGAGQGGGSEARDVNGVAFMAQSLTGVSGKDLPALIDEHKSRLGS 815

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+++L+      KA+V   VT DL D+ +AVDL R +   LGG GGGGRP MAQ GG + 
Sbjct: 816 GVVLLIA-DTGGKAAVAAGVTADLTDQLSAVDLVRAAVAELGGKGGGGRPDMAQGGGKDA 874

Query: 883 NKADQAIAGVASFL 896
           + AD AI      L
Sbjct: 875 SNADAAIRAAEQVL 888


>gi|260433747|ref|ZP_05787718.1| alanyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417575|gb|EEX10834.1| alanyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 890

 Score =  889 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/902 (47%), Positives = 563/902 (62%), Gaps = 44/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFVNSGMVQFKNLFTGLETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF++WKK  G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRLLTTVYHTDDEAFEIWKK-VGVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFEDGSMRELDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   T +   G+  V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKTLIEASADATNVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+P L   MG+ Y EL +A+ LIEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAEDPVMHRLVPTLVQLMGAQYSELGRAQALIEETLLLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  ++ L  D  L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDEEVAGLPDDAPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTEGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G    + +WF + +  GAT F+GY+                  
Sbjct: 419 AAMAEQKAKARAAWAGSGEAADQAVWFDVLDAAGATDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+++ G +VE+   G+   +V +QTPFY EAGGQ+GDTG       
Sbjct: 461 -----TEKAEGQVLAVIRDGALVEKLEPGESGWIVSNQTPFYGEAGGQVGDTGVIRRLED 515

Query: 540 R----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           R    L     +     +  H   VERG+      + L +D+  R  +  NHSATHLLH 
Sbjct: 516 RDEVALVEDTKKFADAKVIAHKVTVERGVFAKGEPVELEVDHARRSAIRANHSATHLLHE 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS    D LRFD +H+K +T  E++++E  VN  I QN PV TRIM 
Sbjct: 576 ALRETLGEHVAQRGSLNAADRLRFDFSHTKAMTPEEIETVEREVNAFIRQNSPVETRIMT 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLY 709
            +DA   GA AL G KY D VRVVS+         DG   S  LCGGTHV  TG+I    
Sbjct: 636 PDDARKLGAQALFGEKYGDEVRVVSMGKAPTGKGHDGETWSIELCGGTHVRQTGDIGTFV 695

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+ +S+  AG+RRIEA+TG  A  +L  QD +L  +AS LK    +VV RV+ + +E + 
Sbjct: 696 ILGDSASSAGVRRIEALTGDAALEYLSTQDRRLAQVASELKAQPEDVVTRVKALLDERKA 755

Query: 770 LQLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           LQ   A+ + +L                +  + F++  +S V  K+L +++D  + ++ S
Sbjct: 756 LQNEVAQLRRELAMAGGAGQANGAVAKDVNGIKFLAQALSGVSGKDLPALIDEHKTRLGS 815

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G ++L+      KA+V   VT DL  + +AVDL R + + LGG GGGGRP MAQ GG + 
Sbjct: 816 GAVLLIA-DSGGKAAVAAGVTSDLTQKISAVDLVRAAVQELGGKGGGGRPDMAQGGGRDP 874

Query: 883 NK 884
           + 
Sbjct: 875 SN 876


>gi|303257717|ref|ZP_07343729.1| alanine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|331000999|ref|ZP_08324635.1| alanine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859687|gb|EFL82766.1| alanine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|329569774|gb|EGG51538.1| alanine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 875

 Score =  889 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/914 (40%), Positives = 541/914 (59%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR+TFL+F +  GH ++ SS ++P +DPTL+FTN+GM  FK+++ G +K  Y  
Sbjct: 1   MFTASEIRSTFLKFMESKGHTIVASSPVVPGDDPTLLFTNAGMNQFKDVYLGFDKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT+ F L
Sbjct: 61  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKNAWELLTEHFKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW M +TGPCGPCS
Sbjct: 121 PPEKLWVTVYAEDDEAYNIWNKEVGIPADRIVRIGDNKGARFASDNFWMMGDTGPCGPCS 180

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  + GG P    E+G+RY+EIWNLVFMQF +  K     LP+ S+DTGMGLER
Sbjct: 181 EIFYDHGPSVAGGPPGSPDEDGDRYMEIWNLVFMQFNRDEKGVMHKLPRPSVDTGMGLER 240

Query: 233 MATVLQEKTNNYDIDLFKHLIQASE---QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289
           ++ VLQ   +NY+IDLF++L++A     +  G +    N  + +VI DH+R+ +F+IADG
Sbjct: 241 ISAVLQGVHSNYEIDLFQNLMKAVIDEVKAAGAEDVDPNSPSVKVIADHIRACTFIIADG 300

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P NEGR YVLRRI RR M +   LG  +    +L+ A+  EMG  YPE+      I+E
Sbjct: 301 VVPGNEGRSYVLRRIARRGMRHGFKLGARKLFFSNLVKAVAKEMGDQYPEIRNP--HIQE 358

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            LR E+ RF +TL +GL +L+  L+     +IL GDVAFKL+DT+G P+D+  D+   + 
Sbjct: 359 VLRQEEVRFSQTLSKGLDILNEALAS--GTKILGGDVAFKLHDTYGFPVDLTADVCREKN 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              +D   F+  +E+QR +ARA      +         L+ +   T+F+GYD L      
Sbjct: 417 -VSVDFEGFDALMEKQREQARAKGKFKMAQG-------LEYEGKPTEFLGYDTLTVQAC- 467

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                                 V+AI + GE V++A +G +V VVFD+TPFYAE+GGQ+G
Sbjct: 468 ---------------------RVEAIYKDGEPVKDAEAGDEVVVVFDRTPFYAESGGQMG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G        L++ D  K    +F H   V  G ++        +D +NR   + NHS 
Sbjct: 507 DKGTFKNKTTILKVDDTFKIKANVFGHMCYVAEGEVKVGDLFSAQVDEENREATARNHSV 566

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  ++  +ED VN  I +N P 
Sbjct: 567 THLMHKALREVLGAHVQQRGSMVNGDRTRFDFVHTSPMTREQINEVEDIVNKEILRNAPT 626

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            TR+M  ++A  + A  L G KY + VRV+++        S  LCGGTHV  TG+I +  
Sbjct: 627 QTRVMPIDEAKKTNAVMLFGEKYGENVRVLNIGS------SCELCGGTHVQRTGDIGMFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+SES I AG+RR+EA+TG  A  +   Q+E ++ +A  LK     VV +V +  E  ++
Sbjct: 681 IISESGISAGVRRVEAVTGMAALHYAQNQEEIIREVAEELKAPALEVVSKVVDTVEHLKR 740

Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +      K++      +        +  V  +   +  +++KEL++ +D L+ +++SG+
Sbjct: 741 TEKDLNALKVKFAQAGAAHMASQAQDVNGVAVLVTEMKGIETKELRNSVDGLKDQLKSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L+  S++ KAS  + VT+DL+ +  A D+ +  A+ L GG GGGRP  AQ GG     
Sbjct: 801 IVLI-KSEDGKASAAVGVTKDLVGKIKAGDVMKFVAEQL-GGKGGGRPDFAQGGGAAPAD 858

Query: 885 ADQAIAGVASFLKK 898
            +  +    +F+ +
Sbjct: 859 MNALLGKTRTFITE 872


>gi|297717784|gb|ADI50035.1| alanyl-tRNA synthetase [Candidatus Odyssella thessalonicensis L13]
          Length = 865

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/891 (48%), Positives = 594/891 (66%), Gaps = 34/891 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F++N HE++ SSSL+P NDPTL+FTN+GMV FK++FTG EK  Y  
Sbjct: 1   MRTLADIRSTFLNYFKENRHEVVASSSLVPANDPTLLFTNAGMVQFKDVFTGLEKRSYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI LAW+L+TK F L
Sbjct: 61  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIYLAWNLVTKNFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TVY EDEEA  LWKKI+G    KIIRI T+DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 SPERLLVTVYHEDEEAANLWKKIAGFPDHKIIRIATSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  ++G+R+ E WNLVFMQFEQQ    R  LPK S+DTGMGLER AT+LQ 
Sbjct: 181 ESIAGGPPGSADQDGDRFTEFWNLVFMQFEQQADGTRINLPKPSVDTGMGLERFATILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD DLFK LI+AS ++TG +       +H VI DHLR+SSFL+ADG++P+NEGRGY
Sbjct: 241 VHNNYDTDLFKSLIEASTELTGTQAAAY-RHSHNVIADHLRASSFLLADGVMPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L+  L   MG+AYPEL +A+ +I+E L+ E+ERF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKEPLMYRLVDRLVEVMGTAYPELTRAQAMIKENLKLEEERFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+   + L   + L+G++AFKLYDT+G PLD+ QD+L ++  + +D+  FN
Sbjct: 360 QTLERGLRLLEEETAKLAPTQALSGEIAFKLYDTYGFPLDLTQDVLRSQDRS-VDLEGFN 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q++ ARAH  G G    E++WF +++++GA++F+GY+                  
Sbjct: 419 AAMAAQKAAARAHWSGSGEKKDEQVWFDIQQEFGASEFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                +    ++V+AIV   + V    +GQ  ++VF+QTPFYAE+GGQ GD G       
Sbjct: 461 -----SETAEALVQAIVVNSQTVAHLSAGQTGDIVFNQTPFYAESGGQEGDQGVIHFANG 515

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++ +  K    + VHH  +E G ++   +  L ++ Q R+ L  +HSATHLLH AL 
Sbjct: 516 AQARVLNTNKHLGSLHVHHVTLESGRIKVGETAKLVVNGQRRQGLRAHHSATHLLHAALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS +  D LRFD TH+KP+T+ E+K+IE  VN  I  N  + T +M  E+
Sbjct: 576 RHLGGHVTQKGSLVAADRLRFDFTHTKPLTAEEIKAIEQEVNLQILANTAIETHLMAAEE 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AIASGA AL G KY D VRV+ +   DG  +S  LCGGTH S TG+I L+ I+SE+ + A
Sbjct: 636 AIASGAMALFGEKYGDEVRVLKMGQCDGAAYSIELCGGTHASRTGDIGLVKILSEAGVSA 695

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RR+EAI G  A  +L    E++  L+  LK     +  +++ + +E +  +   A  +
Sbjct: 696 GVRRLEAIAGIAALDYLRSLQEQISKLSFTLKCPSVEIPEKIDLLLQERKTFERQLADLR 755

Query: 779 LQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            ++ +   S        +I  +N ++  + ++ +K+LK ++D L+ +++SG+I+L  +  
Sbjct: 756 QKMALGGSSGTTVAGLKQIGHINVLTKNLVDIPAKDLKPLVDQLKTEVKSGVIILTSVV- 814

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           E K +++I VT DL D+ NAVDL R  ++VLGG GGGGRP MAQ+GG N  
Sbjct: 815 EDKVALVIGVTADLTDKVNAVDLVRAGSEVLGGKGGGGRPDMAQAGGSNPT 865


>gi|283856345|ref|YP_162580.2| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|59802972|sp|Q9RNN8|SYA_ZYMMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|283775342|gb|AAV89469.2| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 890

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/914 (49%), Positives = 592/914 (64%), Gaps = 41/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E   Y+ 
Sbjct: 1   MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D  RL +TVY  DEEAF LW+KI+GL  D+II+I T+DNFWSM +TGPCGPCSEIF+D  
Sbjct: 121 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+R++EIWNLVFMQ+EQ N + R  LP+ SIDTGMGLER+A+VLQ 
Sbjct: 181 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T    +G    +HRVI DHLR++ FL+ADG+LPANEGRGY
Sbjct: 241 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G  EPLM  L+PAL +EMG AYPEL++AK LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL +L+    HL   + L G VAF+LYDT+G P D+  D L AR L  +D   F+
Sbjct: 361 QTLANGLKILEDETQHLKSGDTLPGAVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR  ARA   G G   +++IWF + ++ G T+F GY                   
Sbjct: 420 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYT------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  + A+++ G+ VE A  G  + ++ +QTPFY E+GGQ GD G   G+  
Sbjct: 462 -----AEKGSGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITGNND 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++ +TD QK    I  H A +E+G ++    + L +D  +R +L  NHSATHLLH AL 
Sbjct: 517 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HVSQ GS ++ + LRFD +H K ++  EL +IE  VN  I  N  V TR+M  E 
Sbjct: 577 DQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMTPES 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           A+ +GA AL G KY + VRV+S+        +    S  LCGGTHVS+ G+I L +IVSE
Sbjct: 637 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +++ +GIRRIEA+TG+ AR  L+G+D  L+  AS LK     V  R   I +E RK +  
Sbjct: 697 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 756

Query: 774 HAKRKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            A  +  L + + +           K+    F+  +I  +D K L+ ++D  +K I+SG+
Sbjct: 757 LADAQKALALANANGGQGGNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I L+ +  E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+
Sbjct: 817 IALITV-NEGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 875

Query: 885 ADQAIAGVASFLKK 898
           A QA+  V + L+K
Sbjct: 876 AAQALEAVKALLEK 889


>gi|261253947|ref|ZP_05946520.1| alanyl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260937338|gb|EEX93327.1| alanyl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 860

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/911 (41%), Positives = 533/911 (58%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W +  G+ AD+I+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNQKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G +    +  + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEVVGHED--LSNQSLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY            
Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNATIKTEAETEFCGY------------ 460

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S V  I  +GE  E   +G K  ++  +TPFYAE+GGQ GD G
Sbjct: 461 -----------AGTQGNSNVAEIFVEGEAAESLSAGDKAIIILSETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFKVEDTQKLGN-AIAHHGVLAEGVLAKGDEVEAVVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD ++ + +T AELK +E  VN  + +N  + T 
Sbjct: 569 LHAALRQVLGEHVAQKGSLVKPENLRFDFSNLEAVTPAELKEVERLVNAQVRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +               ++ E  ++ + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEEQQAKYEE--------------KLVESAQKAKSLEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   +          I     +   +   D+K L++++D ++ ++ SG+I+L
Sbjct: 730 EIQKLKDKMAAAESANIMGKVQDINGTKVLVAALEGADNKNLRTMVDDIKNQVGSGVILL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             I  + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +      
Sbjct: 790 ANI-NDDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPD 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIQSVQPWLEE 858


>gi|85858185|ref|YP_460387.1| alanyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|123515492|sp|Q2LPL7|SYA_SYNAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|85721276|gb|ABC76219.1| alanyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 878

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/903 (42%), Positives = 540/903 (59%), Gaps = 41/903 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR +FL FF+  GH  + SSSLIP +DPTL+FTN+GMV FKN F G E   Y    + 
Sbjct: 6   SEIRESFLRFFEGKGHTRVSSSSLIPKDDPTLLFTNAGMVQFKNAFLGLEDRGYSRAASC 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L + R
Sbjct: 66  QKCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKREAIAWAWEYLTEVIQLPKER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+ +D+EA+++W +   + AD+I+R+    NFW M ETGPCGPCSEI +DQGE   
Sbjct: 126 LWVTVFQDDDEAYRIWLEEMRIPADRIVRLGEKSNFWMMGETGPCGPCSEIIYDQGEGTG 185

Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P        +RY+EIWNLVF QF++        LPK +IDTGMGLER+A V Q   +
Sbjct: 186 CGRPDCHIECGCDRYLEIWNLVFTQFDRDEAGILTPLPKPNIDTGMGLERLAAVAQGVKS 245

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NYD DLF  L+ A  + TG  Y     + V+ RVI DH RS +FLI DGILP+NEGRGYV
Sbjct: 246 NYDTDLFAPLLAAISRTTGKPYGKNEEDDVSLRVIADHARSVAFLIGDGILPSNEGRGYV 305

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  + +LLG  +P +  L P +   M   YP+L+  K  I + + +E++RF +
Sbjct: 306 LRRILRRAARHGKLLGLNQPFLHELTPVVIEAMKETYPDLLDKKSYITKVILNEEQRFME 365

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLD GL +L   +S L K     + GDV F+LYDT G P D+  DI+    L  ID   F
Sbjct: 366 TLDAGLKILQEEVSRLKKAGTTTIPGDVVFRLYDTFGFPTDLTADIVRRDNLT-IDEDGF 424

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +A+E QR +AR    G G      ++  L  +  +T F+G++                 
Sbjct: 425 QRAMEVQREKARESWKGSGEEAISALYQKLSTQGISTVFVGHE----------------- 467

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S + A++Q+ E+V+    G++ E++  +TPFY E GGQ+GDTG   G+ 
Sbjct: 468 -----GVCNAQSQITALLQKEELVDSLAEGEEGELIVAETPFYGEIGGQIGDTGTIEGED 522

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D ++  + +  H   V +G  R   S+ L +    RR    NHSATHLL  A+ 
Sbjct: 523 FVFEVLDTRRPLDNLISHVGRVIKGRGRKGDSVNLIVAEDKRRATEANHSATHLLQAAMK 582

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           T++G+H+ Q+GS +T + LRFD TH   I   EL+ IE+  N +I +NLPVVTR++  E+
Sbjct: 583 TVMGNHIKQSGSLVTAERLRFDFTHFSKIEENELEQIENLANAVIRRNLPVVTRVLPLEE 642

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ +GA A+   KY ++VRVV +     G  S  LCGGTH+  TG+I  + I+ ES+I A
Sbjct: 643 AMKTGATAVFDEKYGEKVRVVRM-----GDFSMELCGGTHIQRTGDIGFIKIIHESAIAA 697

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ A +H    + +LK  A  LKVS  ++  RVE++ +  +  +      K
Sbjct: 698 GVRRIEAVTGREAVNHARRVENELKKAAKLLKVSPFDLGERVEKLIKTQKDQEKEIETLK 757

Query: 779 LQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +L  +D +       +I  +  ++  ++  D+K L+   D L+ ++QSGII L+G   E
Sbjct: 758 GRLAAKDSADLLSQAREIRGIRVLTAAVNAPDAKTLRDFGDKLRDRLQSGII-LIGSKAE 816

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            KA +L +VT+DL DR++A  + R  A V+ GG GGGRP MAQ+GGP     ++A+  + 
Sbjct: 817 GKAMLLCLVTKDLTDRYSAGSIIREIAPVV-GGKGGGRPDMAQAGGPEPENLERALKHLE 875

Query: 894 SFL 896
             +
Sbjct: 876 EMI 878


>gi|66046785|ref|YP_236626.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|63257492|gb|AAY38588.1| Alanyl-tRNA synthetase, class IIc [Pseudomonas syringae pv.
           syringae B728a]
          Length = 899

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 26  MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 85

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 86  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 145

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 146 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 205

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 206 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 265

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 266 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 323

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 324 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 383

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 384 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 442

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 443 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 489

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 490 -----------------SASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDS 532

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 533 GFLQAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 591

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I + +L+++ED VN  I +N  V+T
Sbjct: 592 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMT 651

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 652 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 707

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 708 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE 767

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 768 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 827

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 828 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 885

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 886 SALALAVPFVEQ 897


>gi|163802982|ref|ZP_02196869.1| alanyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159173272|gb|EDP58100.1| alanyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 865

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/915 (41%), Positives = 539/915 (58%), Gaps = 72/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LTK   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTKTLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +T+Y+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTIYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            E+E FG+TL+RG+ +L+  L ++       ++L+G+  FKLYDT+G P D+  D+   R
Sbjct: 361 IEEENFGRTLERGMAILNEALDNISSQGTDGKVLDGETVFKLYDTYGFPADLTNDVARER 420

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
               ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G   
Sbjct: 421 EF-VIDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDAQTEFCGYTGTKG--- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               SS V A+  +G  V    +G K  +V  +TPFYAE+GGQ 
Sbjct: 471 --------------------SSSVAAMFVEGNEVASLSAGDKAIIVLGETPFYAESGGQC 510

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +    ++ D QK       HH I+  G+L  +  +   +D + R  +S+NHS
Sbjct: 511 GDAGEIRTESGVFRVEDTQKLGN-AIAHHGIMAEGVLAKDDEVATIVDAERRAAISLNHS 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  DGLRFD +H + +T+AELK +E  VN  + +N  
Sbjct: 570 ATHLLHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQVRRNHT 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + T +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L 
Sbjct: 630 IETNVMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SE  I AGIRRIEA+TG+ A   +  Q  K +               ++ E  ++ +
Sbjct: 685 KITSEGGIAAGIRRIEAVTGEGALDAIEAQTTKYEE--------------KLAESAQKAK 730

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L+    K + ++   +          I     +   +   DSK L++++D ++ ++ SG
Sbjct: 731 SLEKEIQKLQDKMAAAESANIMGKVQDINGTKALIAALEGADSKNLRTMVDDIKNQVGSG 790

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L  ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +  
Sbjct: 791 VILLANVNGD-KIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVA 848

Query: 884 KADQAIAGVASFLKK 898
              +A+  V  +L++
Sbjct: 849 ALPEAMKSVQPWLEE 863


>gi|302189037|ref|ZP_07265710.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 874

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 537/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERDLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G   R  ++D  K     F+HH +V  G L     +   +  + R   ++NHSATH
Sbjct: 508 GFLQGGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGTQVETQVSDEVRNATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I + +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHARRTGDISLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|325924500|ref|ZP_08186019.1| alanyl-tRNA synthetase [Xanthomonas gardneri ATCC 19865]
 gi|325544995|gb|EGD16330.1| alanyl-tRNA synthetase [Xanthomonas gardneri ATCC 19865]
          Length = 882

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/909 (42%), Positives = 534/909 (58%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAISWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIQESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLIPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+ID+F+ LI  +  +TG+        + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGVAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQATVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     E++ G  AF+L+DT+G P+D+  DI   RGL  +D
Sbjct: 366 EERFAETLDAGMKIFDDVASRA--QEVIPGADAFRLFDTYGFPVDLTSDIARERGLR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA       G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVATMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVERADAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ + I D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGTGVSIDIADTQKFAGQFHGHVGRITEGALALGDVLSGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +       +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A  L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 ASA-GKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 DGVHSWVKQ 879


>gi|294788161|ref|ZP_06753404.1| alanine--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294483592|gb|EFG31276.1| alanine--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 873

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/912 (42%), Positives = 548/912 (60%), Gaps = 58/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  +L+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKYLQFFESKGHQIVRSSSLVPHNDPTLLFTNAGMNQFKDVFLGFDKRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIHYAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L +TVY ED+EA+ +W K  GL  +KI+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPKEKLLVTVYAEDDEAYNIWHKEIGLPENKIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGEHIWGGIPGSPEEDGDRWIEIWNNVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF++L++A  + TG++    ++ + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQGVHSNYEIDLFQNLLKAVARETGVE-FSMDVPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKEMGDAYPELREKQTQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+VLL+  LS   K   LNG++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KAEETRFAQTLETGMVLLENALSGSLKR--LNGEIIFKLYDTYGFPYDLTADICRER-EV 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN+A++EQR+RARA           K    L      TQF GY           
Sbjct: 417 EMDEDGFNKAMDEQRARARAAQNF-------KANTQLDYNGQDTQFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           V++ V A+ +  E V E   G+   +V DQTPFYAE+GGQ+GD 
Sbjct: 461 --------------RKVNATVIALYKDSEAVTELHEGETGAIVLDQTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R ++ D QK    +F    +   G L+   S++  ID   R     NHSATH
Sbjct: 507 GYILAGENRFEVRDTQKIKAAVFGQFGVQVSGSLKVGDSVLAEIDNDIRDANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +T +  RFD++H++ IT  E+  +E  VN  I  N+ V  
Sbjct: 567 LMHKALREVLGNHVEQKGSLVTAESTRFDISHNQAITPEEIAEVERRVNTAILANVAVDA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHV+ TG+I L  I+
Sbjct: 627 NIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GEFSTELCGGTHVARTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SES I AG+RR+E ITG  A      Q+  LK++ S +K     +V+ +++    + + L
Sbjct: 682 SESGIAAGVRRLEVITGLNALRWAQNQETLLKNIISEVKAQTEKDVLSKIQANANQTKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V        +   +  V+ +   I + ++  L+ ++  L  K    ++
Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGTVSLVVAQI-DAEASALRDIVTDLTGKSDKAVV 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTAKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKL 858

Query: 886 DQAIAGVASFLK 897
            + +A V +++ 
Sbjct: 859 PETLASVENWVN 870


>gi|330981768|gb|EGH79871.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 874

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLQAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|85703236|ref|ZP_01034340.1| alanyl-tRNA synthetase [Roseovarius sp. 217]
 gi|85672164|gb|EAQ27021.1| alanyl-tRNA synthetase [Roseovarius sp. 217]
          Length = 892

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/895 (48%), Positives = 574/895 (64%), Gaps = 40/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL FF++N H ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPTLNEIRSTFLSFFERNDHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGVEHREYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AWDLLTK+F +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA  +WKK +GLS D+IIRI T+DNFWSM  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLVTVYHTDDEAATIWKKYAGLSDDRIIRIKTDDNFWSMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 181 DSIWGGPPGSAEEDGDRFIEIWNLVFMQNERFEDGTMRALDMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFL+ADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSQDPDGPGRVHHRVIADHLRSTSFLMADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG A+PEL +A+ +IEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHMLGAKDPVMYRLVPALVAQMGQAFPELGRAQAMIEETLRLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  L+ L     L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 QTLERGLRLLDDELTALDDSAALPGATAFKLYDTYGFPLDLTQDALREKGRE-VDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G    + +WF + E+  AT F+GYD                  
Sbjct: 420 AAMAEQKAKARAAWSGTGEAADQAVWFDISEQVSATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + V AIV +G+ V+    G    V+F+QTPFYAE+GGQ+GD G  +G  +
Sbjct: 462 -----TEVSEAQVVAIVSEGKRVDAIEPGGTGWVIFNQTPFYAESGGQVGDQGRLVGKAV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              I+D +K   G+F H    + G L   MS+ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 SGSISDTKKFPGGLFGHLFTPDEGRLGVGMSVKLEVDHSRRNAIRANHSATHLLHEALRK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++AEL+ +E  VN+ I QN PV TRIM  +DA
Sbjct: 577 ALGEHVAQRGSLNAEDRLRFDFSHAKALSTAELERVESEVNEFIRQNAPVETRIMTPDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHV  TG+I +   + 
Sbjct: 637 RALGAQALFGEKYGDEVRVVSMGAEAGSGKGADGRTYSIELCGGTHVRRTGDIGVFVALG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +++  AG+RRIEA+TG  A  +L GQ  +L  +AS LK    +V  RV+ + +E R L  
Sbjct: 697 DAASSAGVRRIEALTGAAAFDYLSGQAARLGQVASELKARPEDVADRVKALMDERRALAN 756

Query: 773 IHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             A+ + +L +         +    +  V  ++ +++ V  K+L  ++D  + ++ SG +
Sbjct: 757 EVAQLRRELAMSGGAAQGGTVEARDVGGVKLIAQVMTGVQGKDLPPLIDEHKARLGSGAV 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +L+      K +V   VT+DL  R +AV++ R++   LGG GGGGRP MAQ GG 
Sbjct: 817 LLIA-DTGGKVAVAAGVTDDLTGRLSAVEMVRVAVVELGGKGGGGRPDMAQGGGT 870


>gi|302389912|ref|YP_003825733.1| alanyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302200540|gb|ADL08110.1| alanyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 880

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/910 (41%), Positives = 550/910 (60%), Gaps = 47/910 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  FL FF+  GH  +PSSSL+P NDPTL+FTN+GM  FK++F G +K  +  
Sbjct: 1   MMTSSEIREKFLSFFESKGHVRVPSSSLVPYNDPTLLFTNAGMNQFKDVFLGLKKLPFTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLD+VGRT RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L
Sbjct: 61  ATTAQKCVRAGGKHNDLDSVGRTARHHTFFEMLGNFSFGDYFKRDAIAYAWEFLTEVLQL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL++++Y+ D+EAF LW++++ +  +KIIR+   DNFW+M +TGPCGPCSEI+ D+G
Sbjct: 121 PKERLWVSIYENDDEAFYLWQEVANIPPEKIIRLGEKDNFWAMGDTGPCGPCSEIYIDRG 180

Query: 181 ECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E      P       + +R+ E+WNLVFMQ+ +        LP+ SIDTGMGLER+ATV+
Sbjct: 181 EEHRCNSPECKIGVCDCDRWRELWNLVFMQYNRDEHGNLTPLPRPSIDTGMGLERIATVM 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEG 296
           Q   +NYD DL + +I   E +TG KY G+      RVI DH+R+ +FLI+DG+LP NEG
Sbjct: 241 QNVYSNYDTDLLRPIIAFVENMTGKKYYGDERGFPFRVIADHIRAITFLISDGVLPGNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           R YVLRRI+RRA  + + L    P +  ++P + + MG AYPE+ + +  I+   + E+E
Sbjct: 301 RSYVLRRILRRAARFGKELDLNRPFLYKIVPVVVSLMGDAYPEIKKNQDYIQRVTKFEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL+ GL LL   ++ L     +++ G++AF LYDT+G PLD+ +D+   +G   ID
Sbjct: 361 RFHETLNDGLKLLFEGMAELEEKNQKVIPGEMAFMLYDTYGFPLDLTEDVAREKGF-NID 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F + +E QR +A+A              + +      T F+GYD L           
Sbjct: 420 REAFEELMERQRKKAKAARKEEYPVNE---LYEILAPMEPTIFVGYDCL----------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGDTGC 533
                          + V+ I+   E V EA     ++ +V D+TPFY EAGGQ+GDTG 
Sbjct: 466 ------------STEAQVELIISGKEPVVEADEKAGEIILVLDRTPFYGEAGGQVGDTGI 513

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    ++ D Q+  +G   H   VE+G +R +  +  ++D   RR ++ NHSATHLL
Sbjct: 514 IENENFTFRVRDTQRTPDGKIYHIGKVEKGFIRLKERVTASVDEARRRDIARNHSATHLL 573

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  D LRFD +H   +T  E+K IED VN  I  +LPVV   
Sbjct: 574 HRALKDVLGEHVNQAGSLVAHDRLRFDFSHFAALTEDEIKKIEDLVNKAILDDLPVVVEE 633

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              E+A  +GA AL G KY ++VR+VS+     G +S  LCGGTHVSST +I L  I+SE
Sbjct: 634 TTVEEAQKAGAIALFGEKYGEKVRMVSM-----GNYSKELCGGTHVSSTSKIGLFKIISE 688

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           SS+ AG+RRIEA+TG    ++       +  L S LK    ++  +VEE++E  ++ +  
Sbjct: 689 SSVGAGVRRIEAVTGWNLLNYTRENLAIISDLVSLLKSKPQDLTAKVEELFETIKRNERQ 748

Query: 774 HAKRKLQLN---VEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               + +L    VE+++  KI   D+N +S  + +    +L+++ D L++KI+SGI++L 
Sbjct: 749 VESLRQRLINTRVEEIAAGKILLGDINVISAKVDDASMDDLRNISDVLRQKIKSGIVVLG 808

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             S + +  ++  VT+DL+++ ++A  + + +A+ + GG GGGRP  AQ+GG   +K +Q
Sbjct: 809 STSGD-RVFLVCSVTKDLVEKGYHAGKIVKQAAE-VAGGSGGGRPDFAQAGGKYPDKLEQ 866

Query: 888 AIAGVASFLK 897
           A+      +K
Sbjct: 867 ALKVAVDVIK 876


>gi|205830247|sp|A1S4E9|SYA_SHEAM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 873

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/909 (42%), Positives = 556/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F++ GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    
Sbjct: 4   TTAALRSAFLEYFRQQGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDCFLGMEKRSYVRAA 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWEFLTGTLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY  D+EAF +W K  G+ A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 EKLCVTVYHTDDEAFDIWNKQIGVPAENIIRIGDNKGAPFASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWN+VFMQ+ +Q+      LPK ++DTGMG+ER++
Sbjct: 184 FYDHGEHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQSDGTLDPLPKPAVDTGMGIERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+        + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQKLIAKAAEIIGVSD--LENKSLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+     L+P L   MG A  EL   + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLIEAMGDAAKELKATQTIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   + L+G+  FKLYDT+G P+D+  D+   R L  +D
Sbjct: 362 EEQFARTLERGLGMLDAALADLK-GDTLDGETVFKLYDTYGFPVDLTADVCRERNLK-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A+ EQRSRA+A       G     + +  +   AT F GY  L           
Sbjct: 420 EEGFNAAMAEQRSRAQAA------GQFSADYNAALKIDTATDFCGYTEL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S V A+ + GE V+ A +G  + VV D TPFYAE+GGQ+GD G  
Sbjct: 463 ------------AAESKVVALYRDGESVDAAEAGAVLVVVLDNTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +G+   + D QK  +GI      +  G ++   SL   +D + R +  +NHS THLLH
Sbjct: 511 LAEGVEFNVADTQKFGQGIGHK-GQLALGSIKVGDSLKAMVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +   ELK++ED VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKREELKAVEDLVNTQIRRNHELNFAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A A GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DIEEAKAKGAMALFGEKYDSKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ R+L+  +
Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDVASVVAKLKAQLDKARQLEKEN 744

Query: 775 AKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +              +I  V  +   +  V++  L+ + D L++K++SG+++L  
Sbjct: 745 AQLKDKLAAAASADLAGDAQEINGVKVLVKRLEGVEAGALRGLQDELKQKLKSGVVLLAI 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S + K +++  VT+DL  +  A +L  + A  + GG GGGRP MAQ+GG    K D A+
Sbjct: 805 GSGD-KVNLIAGVTQDLTGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSEPAKLDGAL 862

Query: 890 AGVASFLKK 898
           A V  +L +
Sbjct: 863 ASVVPWLNE 871


>gi|88813103|ref|ZP_01128344.1| alanyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
 gi|88789587|gb|EAR20713.1| alanyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
          Length = 869

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/903 (41%), Positives = 535/903 (59%), Gaps = 47/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F+ N HE++PSSSL+P NDPTL+FTN+GMV FK  F G E+  Y   
Sbjct: 5   KTSAEIRQAFLDYFRANDHEIVPSSSLVPTNDPTLLFTNAGMVQFKETFLGHERRPYSRA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   L 
Sbjct: 65  ASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLQLP 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL++TV++ED+EA  +W +  G++ ++  RI  +DNFW+M +TGPCGPCSEIF+D G 
Sbjct: 125 PQRLWVTVFEEDDEAANIWLEEIGVAPERFARIGAHDNFWAMGDTGPCGPCSEIFYDHGP 184

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS+  +G+R++EIWNLVFMQ+++        LP+  +DTGMGLER+A V+Q  
Sbjct: 185 EVAGGPPGSAQADGDRFVEIWNLVFMQYDRDEHGRLSALPRPCVDTGMGLERIAAVVQGM 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            NN++IDLF HL+ ++ +V G     NN  + RVI DH+R+ +FLI DG+ P NEGRGYV
Sbjct: 245 HNNFEIDLFHHLVHSAARVAGSADLSNN--SLRVIADHIRACAFLIVDGVFPGNEGRGYV 302

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  E     L+  L  +MG+AYP L Q +   E  L+ E+ERF +
Sbjct: 303 LRRIIRRAIRHGYKLGIEEAFFYRLVSPLVEKMGAAYPALEQGRAQAERILKQEEERFRE 362

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++GL LL+G L  L   + + G   FKLYDT+G P+D+  DI   RGL G+D+  F Q
Sbjct: 363 TLEQGLKLLEGDLRRLE-SQTIPGATIFKLYDTYGFPVDLTGDIARERGL-GLDMPGFEQ 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+               +   +  +    +  G T+F GYD L+                
Sbjct: 421 AMA------AQRERARAASAFKVDYKETGDFEGHTEFTGYDHLQD--------------- 459

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                     +V A+  +G       +G++  V+ D+TPFYAE+GGQ+GD G  +   + 
Sbjct: 460 --------QGLVTALYAEGRRRNHLEAGEQGMVLLDRTPFYAESGGQVGDRGWLLASELE 511

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D   K  G F H  +V +G L     +   +D + R+   +NHSATHLLH AL  +
Sbjct: 512 FEVWDT-VKYRGAFGHVGVVRQGRLAAGERVSTRVDAERRQATVLNHSATHLLHAALRRV 570

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H  Q GS + PD LRFD TH +P++  +L+ +E  VND I  N     R M+ ++A+
Sbjct: 571 LGEHAQQKGSLVAPDRLRFDFTHFEPVSREQLERVERLVNDRIRANDVADVRYMSYDEAM 630

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY D VRV+       G  S+ LCGGTHV  TG+I    +VSE+ I AGI
Sbjct: 631 DFGAVALFGEKYADTVRVMRF-----GEFSTELCGGTHVRRTGDIGFFKLVSETGISAGI 685

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEAITGQ A +       +L  +   L+ S  N+  R+E++ +  R+L+   A+++ +
Sbjct: 686 RRIEAITGQCAVAWAETVSRQLAHVGELLRCSSDNIELRLEQLIDRSRQLEKELARQQQK 745

Query: 781 LNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  +           I  V  ++  +   D++ L+  +D L+ K+ S +++L  +  E K
Sbjct: 746 LASQAGTNLADRAVLIDGVKVLATTVEGGDNRALRDTLDQLKHKLGSAVVVLASVDGE-K 804

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT+D  DR  A +L    A  + GG GGGR   AQ+GG +  + DQA+  VA++
Sbjct: 805 VRLVGGVTKDFTDRLKAGELINAVASQI-GGRGGGRADFAQAGGSDPTQLDQALESVAAW 863

Query: 896 LKK 898
           +++
Sbjct: 864 VRE 866


>gi|226952658|ref|ZP_03823122.1| alanyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|226836595|gb|EEH68978.1| alanyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
          Length = 884

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/913 (42%), Positives = 530/913 (58%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 8   MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A++ AW+ LT  +   
Sbjct: 68  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQNALKFAWEFLTSEQWLG 127

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  G+ A++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 128 LPKDRLYVTVYHTDDEAFDIWNKEIGVDAERIIRIGDNKGGQYASDNFWAMGDTGPCGPC 187

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GGLP    E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 188 SEIFYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 247

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 248 RISAVLQHVNSNYEIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 305

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL
Sbjct: 306 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATL 365

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L    ++ G+  FKLYDT+G P D+  DI   R L 
Sbjct: 366 IREEEQFAKTLEQGLKLLEGELAQLK-GNVIAGETVFKLYDTYGFPTDLTADIARERDLT 424

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + S+ +  G TQF GYD   G      
Sbjct: 425 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGYDATHG------ 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 472 -----------------QGQIVAIYKDGIQVDEINEGDEALIVLNQTPFYAESGGQIGDT 514

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D    ++ D +K     FVH  IV  G L+   S+  T+    R   + NHSATH
Sbjct: 515 GIFKNDTGIFEVQDTKKSGG-AFVHQGIVTVGSLKATQSVEATVKADIRAATARNHSATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HV Q GS +  D LRFD  + +P+T  +L+ IE  VN  +  N PV T
Sbjct: 574 LLHAALRQILGDHVQQKGSLVASDILRFDFANDQPVTFDQLQQIERLVNAEVLANTPVTT 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    +    S  LCGG HV  TG+I L  I
Sbjct: 634 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIEDKNFSIELCGGIHVKRTGDIGLFKI 693

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++++   LK  +   V +VE + E    L
Sbjct: 694 TSEGGVAAGVRRIEAVTGTQALEVVQKADTDIQTINGLLKAQKDQTVEKVEAVVETASSL 753

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     +       +IA    +   +  +D+K L+++ D+++ K++  +I
Sbjct: 754 QKQIEQLNQKLASFQAAELLDQVKEIAGRQTLITTVKGLDAKSLRNLHDSVKSKLEDAVI 813

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S++  V +       A D+ +  A+ L GG GGG+P +AQ G P   K 
Sbjct: 814 ILAGVEGD-KVSLIASVAKQYTANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAPLNEKF 871

Query: 886 DQAIAGVASFLKK 898
           DQ  A + ++L++
Sbjct: 872 DQVFAALPAWLEQ 884


>gi|84390150|ref|ZP_00991412.1| alanyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84376804|gb|EAP93679.1| alanyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 860

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/911 (40%), Positives = 528/911 (57%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+   H+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ ADKI+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G      +  + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEVVGHDD--LSNQSLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   +G        L+  L   MGSA  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNDALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR RAR        G     + +  +    T+F GY    G+      
Sbjct: 419 IDEEGFEKAMEAQRKRAREA------GQFGTDYNATLKVDTNTEFCGYTATEGA------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              + A+   GE V    +G K  ++ ++TPFYAE+GGQ GD G
Sbjct: 467 -----------------GEISALFVDGEEVPSLSAGDKAIIILEETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK     F HH  +  G+      +   +D + R  +S+NHSATHL
Sbjct: 510 TLKTASGLFKVQDTQKLGN-AFAHHGELVEGVFAQGDKVEAIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD ++ + +T A++K +E  VN  + +N  + T 
Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q    +               ++ E  ++ + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQANAYEE--------------KLAESAKKAKSLEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K ++   +          I+    +   I   D+K L++++D  + ++ SGII L
Sbjct: 730 DIQLLKEKMAAAESANIMGKVEDISGTKVLVAAIEGADNKNLRTMVDNAKNQVGSGII-L 788

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +    + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     +
Sbjct: 789 IANIADGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVEALPE 847

Query: 888 AIAGVASFLKK 898
           A+  V ++L++
Sbjct: 848 ALKSVRTWLEE 858


>gi|297569857|ref|YP_003691201.1| alanyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925772|gb|ADH86582.1| alanyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 879

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/908 (42%), Positives = 546/908 (60%), Gaps = 41/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + IR  F+E+F + GH L+ SS L+P  DPTL+FTN+GMV FK +FTG+EK  Y   
Sbjct: 1   MNGNEIRQRFIEYFTQRGHTLVESSPLVPHEDPTLLFTNAGMVQFKKVFTGEEKRDYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI++AWD LTKE  L 
Sbjct: 61  VTCQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRMAWDFLTKEIGLS 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+++VY++D+EA+ +W+KI  L   +I+R+   DNFW+M +TGPCGPCSEI  DQGE
Sbjct: 121 PAKLWVSVYEDDDEAYAIWEKIEDLPPGRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGE 180

Query: 182 CIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +       G   + +R++EIWNLVFMQ+E+  +     LPK SIDTGMGLER+A V Q 
Sbjct: 181 AVACPEENCGVDCDCDRFLEIWNLVFMQYERDEQGNLTPLPKPSIDTGMGLERIAAVAQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K NNYD DLF+ +IQ + Q+ G+ Y          RVI DH R+++FL+ADG+LP+NEGR
Sbjct: 241 KINNYDSDLFQPIIQRTCQLAGISYGANLRADTALRVIADHARATTFLVADGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA+ + R LG TEP +  +  A+   MGSA+  L +++ L+ + +R E+ER
Sbjct: 301 GYVLRRIMRRAVRFGRSLGLTEPFLGEVCSAVADGMGSAWGHLGESRELLGKVVRHEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD GL +L   +  L  + I  + GD  FKLYDT+G P+DI +D+    GL   D 
Sbjct: 361 FLETLDHGLGMLASEIERLQGEGIKTIAGDFIFKLYDTYGFPVDIAKDVAQEEGLQA-DE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A+  QR ++R    G G G     +  L E+   ++F+GY+  R           
Sbjct: 420 EGFGAAMARQREQSRRSWKGGGLGELGPGFKELLERGVKSRFVGYETRRHHG-------- 471

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         ++V  + Q+GE+ +EA +G  V +V D+TPFYAEAGGQ+GD G   
Sbjct: 472 --------------TLVAVLDQRGELHDEAAAGTLVSLVCDETPFYAEAGGQVGDWGEIA 517

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G   R ++ +  K  E + VH A V  G L     ++L +    RRQ + +H+ATHLLH 
Sbjct: 518 GGQGRAKVLNTLKIGEHLVVHQAEVAEGKLAVGAEVLLAVAEGRRRQTAAHHTATHLLHA 577

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +  + LRFD TH  P++  E++ +E+ VN+ I  N  +    + 
Sbjct: 578 ALRRVLGEHVKQAGSLVDAERLRFDFTHFSPLSREEIRRVEELVNEEIRANTRLEVATLP 637

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           RE+A+ SGAAAL G KY D VRVV+V     G  S  LCGGTHV +TGEI L  I SE  
Sbjct: 638 REEALQSGAAALFGEKYGDTVRVVAV-----GDFSKELCGGTHVGATGEIGLFKITSEGG 692

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I A  RRIE   G  A S +   +++++  A  LK +   +  R++++    ++L+   A
Sbjct: 693 IAASTRRIEGCCGGLALSRVHALEDEVQQWAGRLKTNPAELGVRLDKLLARQKELERQLA 752

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           +   + +  D         ++  +   +  +     K L+   D L+ K+ SGI +L   
Sbjct: 753 ELAAKASRFDAESVLRQATEVNGIKVATCRLEVDSVKTLREAGDKLRDKMGSGIAVLAAE 812

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               K S+L +V++DL DR+ A D+ + +A+++ GG GGGRP MAQ+GG +  K D A+A
Sbjct: 813 PA-GKVSLLALVSKDLTDRYRAGDIVKQAAQLV-GGSGGGRPDMAQAGGGDPEKIDHALA 870

Query: 891 GVASFLKK 898
            V   + +
Sbjct: 871 AVPGIVAE 878


>gi|148653409|ref|YP_001280502.1| alanyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|205830185|sp|A5WFW1|SYA_PSYWF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148572493|gb|ABQ94552.1| alanyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 903

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/913 (40%), Positives = 538/913 (58%), Gaps = 54/913 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  F++FF    H  +PSSSL+P NDPTL+FTN+GM  FK+ F G +K  Y    T
Sbjct: 20  TADVRKAFIDFFVSKQHTHVPSSSLVPYNDPTLLFTNAGMNQFKDCFLGIDKRDYTRAVT 79

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +   LD
Sbjct: 80  SQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKSAIAYAWEFLTSKQWLGLD 139

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +LY+T+Y+ D+EAF +W +  GL+A++IIRI  N       DNFW+M +TGPCGPCSE
Sbjct: 140 ADKLYVTIYESDDEAFDIWHQDIGLAAERIIRIGDNKGAPYASDNFWAMGDTGPCGPCSE 199

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +F+D GE + GGLP    E+G+RYIE+WN VFMQF +Q       LP  S+DTGMGLER+
Sbjct: 200 VFYDHGEHVEGGLPGTPEEDGDRYIEVWNCVFMQFNRQPDGTMEPLPAPSVDTGMGLERI 259

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + +LQ   +NY+IDLF +LI ++  + G+K   +N  + +V+ DH+R+ SFLIADG+LP+
Sbjct: 260 SAILQGVHSNYEIDLFVNLINSAADIIGIK--NDNQASLKVVADHIRAVSFLIADGVLPS 317

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     ++  L  EMG AYP+L++ +  IE+ +  
Sbjct: 318 NEGRGYVLRRIIRRAVRHGNKLGAEDSFFYKMVAPLVKEMGDAYPQLVEKQAFIEKAIEK 377

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ +F KTL +GL LLD  L  L   ++L+G+ AFKLYDT+G P+D+  DI   RG  GI
Sbjct: 378 EEVQFAKTLAQGLRLLDSELESLKSGDVLSGEAAFKLYDTYGFPVDLTADITRERG-IGI 436

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F++ +  QR RAR       +G  +  + +  +    T+F+GY+ L          
Sbjct: 437 DEAGFDEQMNIQRQRAR------DAGKFDVDYSAAIKVETPTEFVGYEQL---------- 480

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       +     +  + Q G+ VE    G +  +V D+TPFYAE GGQ+G+ G 
Sbjct: 481 ------------DEKEVNIIGLYQDGKEVEVLNEGDEGVIVLDRTPFYAEGGGQVGEMGE 528

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    + D +K     F+HH +V  G L+   +    +    R   + NHSATHLL
Sbjct: 529 IRTSSGVFNVEDTKKSG-QAFIHHGVVNMGSLQKSQTADAQVVSAIRSASARNHSATHLL 587

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG  VSQ GS ++ + LRFD ++   ++  +L +IE  VN+ I  N+     +
Sbjct: 588 HAALRKVLGDSVSQKGSLVSSEMLRFDFSYDNAVSQKDLATIERLVNEQIQANVETHIEL 647

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLL 708
           MN +DA+A GAAAL G KY + VRV+++   +         S  LCGG HV  TG+I L 
Sbjct: 648 MNIDDAMAKGAAALFGEKYGETVRVLTMGTTEIEDGIQKPFSIELCGGLHVKRTGDIGLF 707

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AGIRRIEA+TG  A  ++   D +L +LA+ LK  +  V  RV+ + ++ R
Sbjct: 708 KITSESGIAAGIRRIEALTGMGALRYIQQADSQLTALANQLKAKRPEVADRVQTMADKQR 767

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L+    +   ++     +        IAD   +   ++ +D K ++ ++D ++ K+Q  
Sbjct: 768 ELEKQIERLNQKIASAQAATLVDNVQTIADKKVLIAQVAGIDGKAMRGLIDDIKSKLQDT 827

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+LVG  K+ + ++   V++ L     A D+ R  A  L  G GGG+P  AQ G P+ +
Sbjct: 828 IIILVG-EKDGQLALAASVSKSLTGDIKAGDIIRHLADELE-GKGGGKPDYAQGGAPSSD 885

Query: 884 KADQAIAGVASFL 896
           K    +  + +++
Sbjct: 886 KLTGVMQALPNWV 898


>gi|86146326|ref|ZP_01064650.1| alanyl-tRNA synthetase [Vibrio sp. MED222]
 gi|85835805|gb|EAQ53939.1| alanyl-tRNA synthetase [Vibrio sp. MED222]
          Length = 860

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/911 (40%), Positives = 530/911 (58%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+   H+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF++W K  G+ ADKI+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFEIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G      +  + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEVVGHDD--LSNQSLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   +G        L+  L   MGSA  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAADELKKQQELVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNDALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR RAR        G     + +  +    T+F GY    G+      
Sbjct: 419 IDEEGFEKAMEAQRKRAREA------GQFGTDYNATIKVDTNTEFCGYTGTEGA------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              + A+   GE V    +G K  ++ ++TPFYAE+GGQ GD G
Sbjct: 467 -----------------GEISALFVDGEEVSSLSAGDKAIIILEETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK     F HH  +  G+      +  T+D + R  +S+NHSATHL
Sbjct: 510 TLKTASGLFKVQDTQKLGN-AFAHHGELVEGVFAQGDKVEATVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD ++ + +T A++K +E  VN  + +N  + T 
Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q    +               ++ E  ++ + L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQANAYEE--------------KLAESAKKAKSLEK 729

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K ++   +         +I+    +   I   D+K L++++D  + ++ SGII L
Sbjct: 730 EIQLLKEKMAAAEGANIMGKVEEISGTKVLVAAIEGADNKNLRTMVDNAKNQVGSGII-L 788

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +    + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     +
Sbjct: 789 IANVADGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVEALPE 847

Query: 888 AIAGVASFLKK 898
           A+  V  +L++
Sbjct: 848 ALKSVRIWLEE 858


>gi|94263078|ref|ZP_01286897.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1]
 gi|93456621|gb|EAT06729.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1]
          Length = 925

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/909 (41%), Positives = 545/909 (59%), Gaps = 40/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + ++IR  FL++F    H ++ SS+L+P +DPTL+FTN+GMV FK +FTG+E+  Y+ 
Sbjct: 45  MMDGNTIRQKFLDYFASRQHTVVASSALVPHDDPTLLFTNAGMVQFKKVFTGEEQRDYRR 104

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAWD LT+E  L
Sbjct: 105 AVSCQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRLAWDFLTRELGL 164

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
               L+++VY++D+EA ++W+ I GL   +I+R+   DNFW+M +TGPCGPCSEI  DQG
Sbjct: 165 SPANLWVSVYEDDDEAHRIWEGIEGLPPGRIVRLGEKDNFWAMGDTGPCGPCSEIHLDQG 224

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +P   P      + +R++EIWNLVFM++E+        LP+ SIDTGMGLER+A V+Q
Sbjct: 225 AAVPCQSPECGVDCDCDRFLEIWNLVFMEYERGADGTMKPLPRPSIDTGMGLERIAAVVQ 284

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K NNYD DLF  LI  + ++ G++Y          RVI DH R+++FL+ADG+LPANEG
Sbjct: 285 GKHNNYDSDLFLPLIHRTCELAGVEYGRSARVDTALRVIADHARATTFLVADGVLPANEG 344

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR+MRRA+ + R LG +EP +  +   +   MG AY  L  ++ L+ + +R E+E
Sbjct: 345 RGYVLRRVMRRAIRFGRGLGLSEPFLGEVCATVLETMGGAYSHLEASRELLRKVVRHEEE 404

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TLD GL +L   L+ L +     L G+  FKLYDT+G P+DI +D+    GLA  D
Sbjct: 405 RFLETLDHGLGMLAAELTRLKESGERGLAGEFIFKLYDTYGFPVDIAKDVAQEEGLAA-D 463

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F +A+  QR ++R    G G G     +  L E   +T+F+GY   R    +     
Sbjct: 464 EAGFEEAMARQRQQSRQSWKGGGLGELGPGFRELLEGGVSTEFVGYQSRRHHAPLT---- 519

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                               +   G+++  A +GQ+V +V  QTPFYAE GGQ+GD+G  
Sbjct: 520 ------------------ALLDVDGKMLNTATAGQQVVLVCSQTPFYAEGGGQIGDSGEI 561

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G   R ++ +  +  E +  H A V  G L     ++L +    R++++ +H+ATHLLH
Sbjct: 562 TGLHGRARVDNTIRVGEQLVAHQAEVVEGRLERGEEVLLAVGEGRRQRVAAHHTATHLLH 621

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + P  LRFD TH  P+ +A ++ +E  VN  I  N  + T ++
Sbjct: 622 AALRRVLGEHVKQAGSLVEPGRLRFDFTHFSPLGTAAIREVERLVNVEIRANNSLETAMV 681

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           NR++A+ SGAAAL G KY + VRVV+V     G  S  LCGGTHV +TGEI L  I++E+
Sbjct: 682 NRDEALQSGAAALFGEKYGETVRVVTV-----GEFSKELCGGTHVGATGEIGLFRIIAEA 736

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I A  RRIEA+ G+ A       +++  +LA  LK   G + GR++++    ++L+   
Sbjct: 737 GIAASTRRIEAVCGEEALYRCQQLEDEWAALAGRLKCGPGELAGRIDKLLARQKELERKL 796

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+   Q +  DL        +I     ++  +     K L+ + D ++ K+ S  I ++ 
Sbjct: 797 AQMASQASGFDLERELSRVREIGGARLLACRVPADSVKTLRELGDKVRDKLGSTGIAVLA 856

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + + ++L +V ++L  R+ A +L +  A ++ GG GGGRP MAQ+GG +    DQA+
Sbjct: 857 AEIDGQVALLALVGKELQGRYKAGELVKQVAALV-GGKGGGRPDMAQAGGGDPAGIDQAL 915

Query: 890 AGVASFLKK 898
           A V   ++K
Sbjct: 916 AAVPEIVEK 924


>gi|218710534|ref|YP_002418155.1| alanyl-tRNa synthetase [Vibrio splendidus LGP32]
 gi|218323553|emb|CAV19764.1| Alanyl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 860

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/911 (40%), Positives = 529/911 (58%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+   H+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF++W K  G+ ADKI+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFEIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G      +  + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEVVGHDD--LSNQSLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   +G        L+  L   MGSA  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNDALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR RAR        G     + +  +    T+F GY    G+      
Sbjct: 419 IDEAGFEKAMEAQRKRAREA------GQFGTDYNATIKVDTNTEFCGYTGTEGA------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              + A+   GE V    +G K  ++ ++TPFYAE+GGQ GD G
Sbjct: 467 -----------------GEISALFVDGEEVSSLSAGDKAIIILEETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK     F HH  +  G+      +   +D + R  +S+NHSATHL
Sbjct: 510 TLSTASGLFKVQDTQKLGN-AFSHHGELVEGVFAQGDKVEARVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD ++ + +T A++K +E  VN  + +N  + T 
Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AG+RRIEA+TG+ A   +  Q    +               ++ E  ++ + L+ 
Sbjct: 684 EGGIAAGVRRIEAVTGEAALDAVEAQANAYEE--------------KLAESAKKAKSLEK 729

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K ++   +         +I+    +   I   D+K L++++D  + ++ SGII L
Sbjct: 730 EIQLLKEKMAAAEGANIMGKVEEISGTKVLVAAIEGADNKNLRTMVDNAKNQVGSGII-L 788

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +    + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     +
Sbjct: 789 IANVADGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVEALPE 847

Query: 888 AIAGVASFLKK 898
           A+  V  +L++
Sbjct: 848 ALKSVRIWLEE 858


>gi|114771071|ref|ZP_01448511.1| alanyl-tRNA synthetase [alpha proteobacterium HTCC2255]
 gi|114548353|gb|EAU51239.1| alanyl-tRNA synthetase [alpha proteobacterium HTCC2255]
          Length = 885

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/910 (49%), Positives = 587/910 (64%), Gaps = 38/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +V+ IR+TFL+FF+KN H ++ SS L+P NDPTLMFTNSGMV FKN F GQE   Y  
Sbjct: 1   MVSVNDIRSTFLDFFEKNNHTVVDSSPLVPRNDPTLMFTNSGMVQFKNQFLGQEIRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AWDL+TKEF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIIYAWDLITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY  D+EA  +WKK +GLS D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRLYVTVYHTDDEAANIWKKYAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R+IEIWN+VFMQ EQ +      L   SIDTGMGLER+A +LQ 
Sbjct: 181 ESVFGGPPGSPEEDGDRFIEIWNVVFMQNEQFSDGTLKPLKMQSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DL + LI+AS Q TG+   G+  ++HRVI DHLRS+SFLI+DGILP+NEGRGY
Sbjct: 241 SHDNYDTDLMRDLIEASAQATGVDPYGDQNLHHRVIADHLRSTSFLISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL ++MG AYPEL  A+ LIEE+L  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPIMHQLVPALVSQMGQAYPELGHAQSLIEESLLLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD           L+G  AFKLYDT G PLD+ QD L  +G   +D+  FN
Sbjct: 361 TTLDRGLKLLDEETGVFASGATLSGKTAFKLYDTFGFPLDLTQDALREKG-VDVDVDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA  +G G    E IWF + +K+G T F+GYD                  
Sbjct: 420 DAMSEQKAKARAAWVGSGEVADEGIWFDIADKHGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A++Q G IV +   G  V VV +QTPFYAE+GGQ+ D G    +  
Sbjct: 462 -----TQTSEGQILALLQDGNIVNKVSEGDDVMVVLNQTPFYAESGGQIADNGSINVEKN 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + ITDV+KKA  +F+H   V  G +    S  L+++ + R  +  +H+ATHLL+ AL +
Sbjct: 517 EIIITDVKKKAG-VFIHIGRVVFGEISNGSSAELSVNTEMRSGICNSHTATHLLNEALRS 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG H++Q GS    + LRFD +HSK +T +EL+ +E  VN++I QN  V TRIM  EDA
Sbjct: 576 KLGQHIAQRGSLNAENRLRFDFSHSKSMTQSELRDVELEVNNLIRQNSSVKTRIMTPEDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+           G  +S  LCGGTHV  TG+I    +++
Sbjct: 636 RELGAQALFGEKYGDEVRVVSMGNKKDSGKGLAGNTYSLELCGGTHVQRTGQIGAFALIA 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES+   G+RRIEA TG+ A  H   Q + +  LAS  K    NV+ RV+ + +E + LQ 
Sbjct: 696 ESASAGGVRRIEAFTGKTAELHHAEQSKIMNELASIFKTKTENVIDRVKSLIDERKLLQS 755

Query: 773 IHAKRKLQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                +  + +    +  +  KI + NF      +V SK+L+S++D  + ++ SGII+L+
Sbjct: 756 EIINLRKAVAMGSNDDSQNILKINNFNFYVQTFDDVPSKDLRSLVDEHKNRLGSGIILLI 815

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             +   KA++   VT DL D+ NAVDL ++ A  LGG GGGGRP MAQ+GG +     +A
Sbjct: 816 SGA-GGKAAISAGVTSDLTDQINAVDLVKIVAVELGGKGGGGRPDMAQAGGNDMANVKKA 874

Query: 889 IAGVASFLKK 898
           I+ V +FLK+
Sbjct: 875 ISLVENFLKE 884


>gi|83305856|sp|Q4ZQI4|SYA_PSEU2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLQAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I + +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|224825848|ref|ZP_03698952.1| alanyl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224602072|gb|EEG08251.1| alanyl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 877

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/914 (42%), Positives = 533/914 (58%), Gaps = 60/914 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF   GH+++PSSSLIP NDPTLMFT +GMV FK++F G EK  Y   
Sbjct: 1   MKTSEIRQKFLDFFASKGHQVVPSSSLIPGNDPTLMFTVAGMVQFKDVFLGFEKRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +   
Sbjct: 61  TTSQKCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAITYAWEFLTGEQWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L +TVY  D+EAF +W K  GL  +KI+RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLMVTVYASDDEAFDIWHKTVGLPVEKIVRIGDNKGAAYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE + GG P    E+G+R++EIWN VFMQF +        LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGEEVAGGPPGSPDEDGDRFMEIWNNVFMQFNRDETGTLHPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++TVLQ   +NY+ D    L++A+ + TG++Y   N+ + +VI DH+R+ SF+IADGIL
Sbjct: 241 RLSTVLQHVKSNYETDGLACLVRAAARETGVEY-SQNVPSLKVIADHIRACSFMIADGIL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI RRA+ +   LG        ++  L  EMG AYPEL Q +  IE+ L
Sbjct: 300 PSNEGRGYVLRRIARRAIRHGYKLGQKGLFFHKIVADLVEEMGGAYPELRQQQAHIEDNL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R+E+ RF +TL+ G+ L+D  L   G    ++GD  FKLYDT G P+D+  DI   R   
Sbjct: 360 RAEEVRFAETLEHGMALVDAALQ--GGKIRMDGDTIFKLYDTFGFPVDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D+  F  A+  QR RARA S    +G       +L+     T+F GY+          
Sbjct: 417 EVDMEGFEHAMNAQRERARAASSFKMTG-------NLEYAGADTRFHGYE---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T  V + V A+ +    VE+   G++  VV D T FYAE GGQ+GD 
Sbjct: 460 -------------TASVDAKVLALFKGNTPVEQLAEGEEGVVVLDDTAFYAEGGGQVGDC 506

Query: 532 GCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G     G       +TD QK     F H   V RG L    ++  TID   R   + NHS
Sbjct: 507 GEISVSGGVGALFDVTDTQKIKAATFGHSGRVVRGALHVGDTVQATIDLHKRLATARNHS 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSHV+Q GS +  +  RFD  H +P++ A++  IE  VN I+  N+ 
Sbjct: 567 ATHLLHAALRHVLGSHVAQKGSLVNAERTRFDFAHGEPVSVAQIAEIERVVNRIVLHNVE 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +M  +DAI +GA AL G KY D VRV+ +     G  S+ LCGGTHV  TG+I   
Sbjct: 627 VSANVMAYDDAIRAGAIALFGEKYGDEVRVLKM-----GEFSTELCGGTHVKRTGDIGFF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEY 767
            IV+E  + AG+RRIEA+TG+ A ++   Q+  +K  A  LK      VVG++  + +  
Sbjct: 682 KIVAEGGVAAGVRRIEAVTGEGAVAYAQQQESLVKEAAGALKAQTSEEVVGKIGSLQDNL 741

Query: 768 RKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L+   ++ K +L          S  +I  +  ++  +   D+  L+  +D L+ K++S
Sbjct: 742 KALEKELSRLKAKLAASAGDTLADSAVEIGGIKVLAAELEGADNTALRETLDKLKDKLKS 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             I+L     + K S++  VT DL  +  A +L    A+ + GG GGGRP MAQ+GG   
Sbjct: 802 AAIVLAA-KGDGKVSLVAGVTADLTGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQP 859

Query: 883 NKADQAIAGVASFL 896
            K  +A+AGV +++
Sbjct: 860 EKLAEALAGVNAWV 873


>gi|148260046|ref|YP_001234173.1| alanyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|205829966|sp|A5FXC2|SYA_ACICJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146401727|gb|ABQ30254.1| alanyl-tRNA synthetase [Acidiphilium cryptum JF-5]
          Length = 878

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/902 (48%), Positives = 593/902 (65%), Gaps = 30/902 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR TFL+FF +NGHE++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSSNDIRATFLDFFARNGHEVVPSAPLVPRNDPTLMFVNAGMVPFKNVFTGHEHRPYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLT++F L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIENAWTLLTRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TVY ED+EA  LWK+I+GL  +KIIRI T+DNFW M +TGPCGPCSEIF+D  
Sbjct: 121 PKEKLLVTVYHEDDEAASLWKRIAGLPDEKIIRIATDDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQF ++    R  LP+ SIDTGMGLER A +LQ 
Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQFLEEPAGVRNPLPRPSIDTGMGLERFAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS +V+    +G + V+HRVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDTDTLRALILASAEVSHTDPDGAHKVSHRVIADHLRATSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  EP +  L+PAL  +MG A+PEL +A+ LI ETL+ E+++F 
Sbjct: 301 VLRRIMRRAMRHAHRLGMREPFIYRLVPALTRQMGVAFPELPRAEALIVETLKLEEQKFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             L+RGL LL+  +  LG  E L G VAFKLYDT+G PLD+ +D L  +   G+D   F 
Sbjct: 361 VMLERGLSLLEDEVQKLGSGEKLPGAVAFKLYDTYGFPLDLTEDALREQHR-GLDHEGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++ EQ++RARA   G G   TE +W  L+++ G T+F+GY                   
Sbjct: 420 ASMAEQKARARAAWAGSGDAATETVWLDLRDRLGGTEFLGYSTEESD------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + + A+V  G     A +GQ+V ++ +QTPFYAE+GGQ+GDTG     G+
Sbjct: 467 ----------ASILAVVVNGAPAGRAEAGQEVALILNQTPFYAESGGQVGDTGTLTAPGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD QKKA  +FVH+  +E G +    S+   +D+  R  +  +HSATHLLH AL  
Sbjct: 517 TIRVTDTQKKAGDLFVHYGTIEEGEIAPGNSVHAEVDHARRGAIRAHHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD++  +P+T AEL+++E  VN  I +N  V TR+M  ++A
Sbjct: 577 ALGPHVTQKGSLNAPDRLRFDISQPRPVTGAELRAVEREVNARIRENAAVETRLMTPDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +  GA AL G KY D VRVVS+   D G   +S  LCGGTHV+ TG+I    I++ES + 
Sbjct: 637 VKRGAMALFGEKYGDEVRVVSMGAGDAGRSAYSIELCGGTHVARTGDIGAFRILAESGVA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+TG+ A +    + + L+  A+ LKV+   +  R+  + EE ++ +   A+ 
Sbjct: 697 AGIRRIEAVTGEAALAATEAETDLLEEAAAALKVAPAELPARIAALLEEKKRFERQVAEL 756

Query: 778 KLQLNV--EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           + +L          ++A + F +  + EV  ++LKS+ D++ K + SGI  LV  + E K
Sbjct: 757 QRKLATGGAAAEIEEVAGIKFAARNLGEVSPRDLKSLADSILKSMGSGIAALVSTA-ESK 815

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           AS+++ V+ DL    NAV L + ++ V+GG GGGGRP MAQ+GGP+ +KAD+A+A V + 
Sbjct: 816 ASIVVAVSPDLTSANNAVTLVQAASGVVGGKGGGGRPDMAQAGGPDASKADEALAAVRAL 875

Query: 896 LK 897
           +K
Sbjct: 876 IK 877


>gi|261392163|emb|CAX49673.1| alanyl-tRNA synthetase (alanine--tRNA ligase; AlaRS) [Neisseria
           meningitidis 8013]
          Length = 874

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/911 (40%), Positives = 518/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYTE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQSGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V            +     ++  I   D+  L+ ++  L  K  + +I
Sbjct: 742 EKELAKAKAELAVHAGAKLLDDAKDLGAAKLVATQIE-ADAAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 859 PAVLDSVKDWV 869


>gi|222054217|ref|YP_002536579.1| alanyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|221563506|gb|ACM19478.1| alanyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 876

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/906 (41%), Positives = 545/906 (60%), Gaps = 42/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F  FF++ GH ++ SS+L+P NDPTL+FTN+GM  FK++F G EK  Y   
Sbjct: 1   MTGKEIREKFFRFFEERGHTVVESSNLVPRNDPTLLFTNAGMNQFKDLFLGLEKRGYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AWD LT+E  LD
Sbjct: 61  CSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWDFLTRELKLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA ++W K  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 KNRLYVTVYTDDDEAAEIWNKQEGVPVERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWN VFMQF +  K     LPK S+DTGMGLER+ TV+Q 
Sbjct: 181 GTGCGSPTCEVGCDCDRYMEIWNNVFMQFNRDAKGNMTPLPKPSVDTGMGLERICTVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DL + +I+  E+++G +Y  +  + V+ RVI DH R+ +FLI DG+LP+NEGR
Sbjct: 241 VTSNYDTDLLQGIIRHVEKLSGKRYRQDEKDDVSMRVIADHARAITFLICDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG+ EP++  ++ A+   MG AYPEL++ +  +++ + +E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGFAEPVLYRIVDAVNAMMGDAYPELLEREEYVKKVIHAEEER 360

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+  ++        +L G+V F+LYDT G P+D+  DI+   GL  ID 
Sbjct: 361 FMETLDRGLSILNEEVALLKKQAGTVLPGEVVFRLYDTFGFPVDLTADIVANEGLT-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR +AR +  G G     +I+ +L  K   + F+GYD              
Sbjct: 420 DGFVLCMEKQRLQARENWKGSGEEGLAEIYKNLHGKGIRSAFVGYDE------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S +  ++++G  V EAV G++VEVV   TPFY  +GGQ GD G   
Sbjct: 467 ----------QTAYSPITVLLREGREVTEAVVGEEVEVVVGTTPFYGASGGQAGDIGVIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                L++    K    + VH  +VE+G ++   +  L +  + R   + NH+ATHLL  
Sbjct: 517 TGNAHLKVVGTSKPFADLTVHRVLVEKGTVKVGDAADLKVLTRERNATARNHTATHLLQS 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q GS +T D LRFD TH   + + EL+ +E+ VN  I +N  V +  M 
Sbjct: 577 ALRQVVGDHVKQAGSLVTADRLRFDFTHFSAMAADELRRVENIVNGYIMENSDVSSVEMA 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A+ SGA AL G KY DRV          G  SS LCGGTHV + G+I    IVSE+ 
Sbjct: 637 AAEAMQSGATALFGEKYGDRV-----RVVRVGEVSSELCGGTHVQAAGDIGFFKIVSEAG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG  A  ++   +++ K LA+ +K   G V+ RVE +    ++LQ    
Sbjct: 692 IAAGVRRIEAVTGSGAIEYVQQLEDEQKHLATLIKAEGGGVIDRVERLLARQKELQREVE 751

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + + +LN    +       +   +  ++  +   D K L+ + D+L+ ++QSG+I+L G 
Sbjct: 752 ELQSRLNASKSADLLAGVRESNGIKILATRVETGDPKGLRDLSDSLKDRLQSGVIVL-GC 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +   KA++L+ VT+DL DR  A D+ +  A ++ GG GGG+P +AQ+GG      D+A+ 
Sbjct: 811 AAAGKANLLVAVTKDLTDRCKAGDIIKSLAPII-GGSGGGKPELAQAGGTKPENLDEALE 869

Query: 891 GVASFL 896
                +
Sbjct: 870 AAYKII 875


>gi|330953630|gb|EGH53890.1| alanyl-tRNA synthetase [Pseudomonas syringae Cit 7]
          Length = 874

 Score =  886 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGRS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVSHLNEGEEGVVILDVTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLQAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I + +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|330939519|gb|EGH42850.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 874

 Score =  886 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRAADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLQAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVLFVEQ 872


>gi|319779380|ref|YP_004130293.1| Alanyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317109404|gb|ADU92150.1| Alanyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 874

 Score =  886 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/912 (42%), Positives = 551/912 (60%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF+   H ++ SS LIP NDPTL+FTN+GMV FK++F G+EK  Y   
Sbjct: 1   MKASEIRHNFLKFFESKNHTIVSSSPLIPANDPTLLFTNAGMVQFKDVFLGKEKRTYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLT  F L 
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAITYAWELLTTVFQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EAF +W+   G+  +KIIRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KEKLLVTVYAEDDEAFGIWRDKVGVPEEKIIRIGDNKGSRYASDNFWQMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+R+IEIWNLVFMQFE+ ++     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRFIEIWNLVFMQFERDSEGVLHPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLFK+LI+A+   T      NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFKNLIKAAAVATNTSDLENN--SLKVIADHIRACSFLICDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     L+PAL  EMG A+PELI+ +  I   L+ 
Sbjct: 299 NEGRGYVLRRIIRRALRHGHKLGQNKTFFHTLVPALTKEMGEAFPELIEWQDRISSILKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++RF +TLD G+ +L+  LS+L K + ++G   F LYDT+G P+D+  DI   RG  G+
Sbjct: 359 EEDRFQETLDHGMKILESCLSNLEKGQNIDGQTLFILYDTYGFPVDLTADIARERG-VGV 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F +A+++Q+  ARA               +L      T F GY+ L  S+      
Sbjct: 418 DLDGFEKAMDKQKETARASGKFKAQE-------NLSYSGTDTSFSGYEHLVESR------ 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + ++AI   G  VE A  GQ+V VV D+TPFYAE+GGQ+GD+G 
Sbjct: 465 ----------------ANIQAIYVDGASVESADEGQEVVVVLDRTPFYAESGGQVGDSGF 508

Query: 534 AIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
            IG     ++ I+D +K    +F H+  VE+G ++   S+   ++ +NR  ++ +HS TH
Sbjct: 509 LIGSDTDKQVSISDTRKITPTVFGHYGRVEKGSIKLNDSVDAIVNAENRVLVTAHHSVTH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +  +  RFD +H+ P+T  E++ +E  VN+ I        
Sbjct: 569 LMHLALREVLGDHVKQKGSLVDSEKTRFDFSHNSPMTEEEIRKVELLVNNQILMGRDTYV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA+ SGA  L G KY D VRV+ +        S  LCGGTHVS+TG+I L  I+
Sbjct: 629 EVMPYDDALKSGAIGLFGEKYGDFVRVMQIGD------SRELCGGTHVSNTGQIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + +G+RRIEA+ G +A   +      +   A+ LK S  ++V +++   ++   L+
Sbjct: 683 SESGVASGVRRIEAVAGFKALEWIQNTYRVINQSANLLKSSPKDLVSKIKIQIDQISALE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L          S  +++ +  ++  + +V++K L+ ++D ++ K+ SG++ 
Sbjct: 743 KEITHLKQKLISASSGDLLSSLKEVSGIKTLACEVKDVETKALRDLVDQMKSKLGSGVVA 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +  +  + K ++   VT+DL  +  A DL    +++L GG GGGRP MA  GG       
Sbjct: 803 IFLVEGD-KVTIATGVTKDLTHKLKAGDLVSRLSQIL-GGKGGGRPDMAMGGGTKVEDLQ 860

Query: 887 QAIAGVASFLKK 898
           +AI  V +++K+
Sbjct: 861 KAILDVEAWVKE 872


>gi|58582562|ref|YP_201578.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624448|ref|YP_451820.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575923|ref|YP_001912852.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|75434894|sp|Q5GYM8|SYA_XANOR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123521587|sp|Q2P1N1|SYA_XANOM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830287|sp|B2SUD0|SYA_XANOP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58427156|gb|AAW76193.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368388|dbj|BAE69546.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520375|gb|ACD58320.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 882

 Score =  886 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/909 (42%), Positives = 534/909 (58%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGRGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQIWKLPT 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+        + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA       G    +   L      T F+GY+             
Sbjct: 423 MEGFECAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------RVVALLKQGRPVERAQAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 NGPGVLIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +       +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A  L  +   VV +V  + E  ++LQ   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLQREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          +   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGAAAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVSGVNGSPTGKVKAGELLSNIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|294649969|ref|ZP_06727359.1| alanine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824138|gb|EFF82951.1| alanine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 884

 Score =  886 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/913 (42%), Positives = 530/913 (58%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 8   MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A++ AW+ LT  +   
Sbjct: 68  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQNALKFAWEFLTSEQWLG 127

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  G+ A++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 128 LPKDRLYVTVYHTDDEAFDIWNKEIGVDAERIIRIGDNKGGQYASDNFWAMGDTGPCGPC 187

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GGLP    E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 188 SEIFYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLE 247

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 248 RISAVLQHVNSNYEIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 305

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL
Sbjct: 306 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATL 365

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L    ++ G+  FKLYDT+G P D+  DI   R L 
Sbjct: 366 IREEEQFAKTLEQGLKLLEGELAQLK-GNVIAGETVFKLYDTYGFPTDLTADIARERDLT 424

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + S+ +  G TQF GYD   G      
Sbjct: 425 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGYDATHG------ 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 472 -----------------QGQIVAIYKDGIQVDEINEGDEALIVLNQTPFYAESGGQIGDT 514

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D    ++ D +K     FVH  IV  G L+   S+  T+    R   + NHSATH
Sbjct: 515 GIFKNDTGIFEVQDTKKSGG-AFVHQGIVTVGSLKATQSVEATVKADIRAATARNHSATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HV Q GS +  D LRFD  + +P+T  +L+ IE  VN  +  N PV T
Sbjct: 574 LLHAALRQILGDHVQQKGSLVASDILRFDFANDQPVTFDQLQQIERLVNAEVLANTPVTT 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    +    S  LCGG HV  TG+I L  I
Sbjct: 634 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIEEKNFSIELCGGIHVKRTGDIGLFKI 693

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++++ S LK  +   V +VE + E    L
Sbjct: 694 TSEGGVAAGVRRIEAVTGTQALEVVQKVDHDIQTINSLLKAQKDQTVEKVEAVVETASSL 753

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     +        IA    +   +  +D+K L+++ D+++ K++  +I
Sbjct: 754 QKQIEQLNQKLASFQAAELLDQVKDIAGRQTLITTVKGLDAKSLRNLHDSVKSKLEDAVI 813

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S++  V +       A D+ +  A+ L GG GGG+P +AQ G P   K 
Sbjct: 814 ILAGVEGD-KVSLIASVAKQYTANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAPLNEKF 871

Query: 886 DQAIAGVASFLKK 898
           DQ  A + ++L++
Sbjct: 872 DQVFAALPAWLEQ 884


>gi|325204570|gb|ADZ00024.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 874

 Score =  886 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/911 (40%), Positives = 519/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYTE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQSGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V            +     ++  I   D+  L+ ++  L  K  + +I
Sbjct: 742 EKELAKAKAELAVHAGAKLLDDAKDLGAAKLVATQIE-ADAAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 859 PAVLDSVKDWV 869


>gi|114330803|ref|YP_747025.1| alanyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|122314262|sp|Q0AHX2|SYA_NITEC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114307817|gb|ABI59060.1| alanyl-tRNA synthetase [Nitrosomonas eutropha C91]
          Length = 863

 Score =  886 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/902 (41%), Positives = 545/902 (60%), Gaps = 48/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF+ +GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K  Y   
Sbjct: 1   MKSSEIRQKFLDFFETHGHVVVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT   ++ 
Sbjct: 61  VSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRNAILFAWEFLTGPLNIP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+ TVY ED+EA  +W     ++  +++RI T+DNFW M ETGPCGPCSEIF+D G 
Sbjct: 121 KDKLWATVYAEDDEAADIWLNEVKIAPSRLVRIATSDNFWQMGETGPCGPCSEIFYDHGP 180

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS   +G+RY+EIWNLVFMQ+ +    E   LPK S+DTGMGLER+A V+Q+ 
Sbjct: 181 EVAGGPPGSEDADGDRYVEIWNLVFMQYNRDTSGELHPLPKPSVDTGMGLERIAAVMQQV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI+A+ +VTG +   NN  + +VI DH+R+ +FLI DG++P NEGRGYV
Sbjct: 241 HSNYEIDLFRCLIEAAARVTGEQDLSNN--SLKVIADHIRACAFLITDGVIPGNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +     L+  L   MG AYPEL+ AK  +   +R E+ERF +
Sbjct: 299 LRRILRRAIRHGYRLGQKQSFFHLLVDDLVDVMGQAYPELMAAKKHVIAVIRQEEERFAE 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+ G+ +L+  L+   +  +L GDV F+LYDT G P+D+  DI   RG  GID+  F  
Sbjct: 359 TLENGMGVLEAALAR--ESNMLPGDVVFRLYDTFGFPVDLTADIARERGG-GIDLAGFEM 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + +QR RARA                L+     T+F GY+ L+                
Sbjct: 416 CMAQQRDRARASGKFTMQAG-------LEYVGLPTEFHGYETLQH--------------- 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + +  + ++G  V+   +G +  VV DQTPFYAE+GGQ GD+G  +     
Sbjct: 454 --------EAHILVLYKEGSHVDFIEAGDEAVVVLDQTPFYAESGGQAGDSGELLSGSGT 505

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             + D QK    +F H  ++  G L T   ++  ++   R   + NHSATHLLH AL  I
Sbjct: 506 FTVKDTQKIQAKVFGHAGMLSSGRLVTGDRVIARVNPIARINTAYNHSATHLLHAALRQI 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+HV+Q GS +  D LRFD +H+  + + E++ +E+ VN  I +N  V T++M  ++A+
Sbjct: 566 LGNHVTQKGSLVDADRLRFDFSHNSAMQANEIRQVENLVNAQIRKNHEVATQLMAYDEAV 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+D VRVVS+     G  S+ LCGGTHV  +G+I    IV+ES + AGI
Sbjct: 626 KQGAMALFGEKYSDTVRVVSM-----GDFSTELCGGTHVQHSGDIGFFRIVAESGVAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A ++   Q+++L+ ++  LK +      ++ ++ +  R+++      + +
Sbjct: 681 RRIEALTGEAALAYTQQQEQQLQQVSDVLKAAPHEAALKLSQVLDHVRQVEKEITVLRSK 740

Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L     S       +I  +  ++  +  V+ + L+  +D  + +++S +++L G  ++ K
Sbjct: 741 LAGMQSSSLIEQAQEIKGIRVLAAALENVNVRTLRETLDNFKSRLKSCVVVL-GTIEDDK 799

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT DL  +  A DL    A+ + GG GGGR  MAQ+GG   +K  QA+  VA +
Sbjct: 800 VMLIAGVTNDLTAKLKAGDLINFVAQQV-GGKGGGRADMAQAGGTLPDKLPQALTSVAGW 858

Query: 896 LK 897
           ++
Sbjct: 859 VE 860


>gi|49474375|ref|YP_032417.1| alanyl-tRNA synthetase [Bartonella quintana str. Toulouse]
 gi|59798531|sp|Q6FZF1|SYA_BARQU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49239879|emb|CAF26277.1| Alanyl-tRNA synthetase [Bartonella quintana str. Toulouse]
          Length = 888

 Score =  885 bits (2287), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/911 (50%), Positives = 625/911 (68%), Gaps = 37/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+TFL++F  NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+   + 
Sbjct: 1   MNSVNSIRSTFLDYFHLNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPCKQ 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR GGKHNDLDNVG T RHHTFFEMLGNFSF  YFKE AI L+W+LLTKEF L
Sbjct: 61  ATTAQKCVRVGGKHNDLDNVGYTARHHTFFEMLGNFSFSDYFKEEAIFLSWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ A +LW+KIS LS +KI+RI T DNFW+M ETGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHSDDVAAELWRKISNLSDEKIVRIATVDNFWAMGETGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS +E G+R+IEIWNLVFMQ+EQ +K+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIWGGPPGSANEGGDRFIEIWNLVFMQYEQVSKEERVELPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI AS+++TG++  G+ I +HRVI DHLRS +FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFRALIGASQEITGVEATGDFIASHRVISDHLRSCAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  EPLM  LLP L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGVKEPLMWRLLPVLVREMGQAYPELVRAESLISETLKLEEMRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   S+L + +  NG++AFKLYDT+G PLD+ QD L  RG   +D+ +F+
Sbjct: 361 KTLERGLGLLNEASSNLKEGDHFNGEIAFKLYDTYGFPLDLTQDALRCRG-ISVDVDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ Q++ ARA+  G G   TE IWF+++++ GAT+F+GY+                  
Sbjct: 420 KAMQRQKTEARANWSGSGEAVTETIWFAVRDRVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      I+ A++  G++V+   SGQK  +V +QTPFY E+GGQ+GD+G       
Sbjct: 462 -----IEKAEGIITALICDGKVVDHISSGQKAIIVVNQTPFYGESGGQIGDSGIISSGCF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKK+ G+F+H   V+ G  +T   + LT+D   R+++  NHSATHLLH AL  
Sbjct: 517 VFEVHDTQKKSNGVFIHIGEVKSGQAKTFECVELTVDVVRRQKIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS + PD LRFD +H K ++S ELK IED  NDI+ QN  V T +M  +DA
Sbjct: 577 ILGPHVTQKGSLVLPDRLRFDFSHPKSVSSEELKKIEDLANDIVLQNSEVTTHLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY D VRVVS+             S  LCGGTHV  TG+I L++IVSES
Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGNPLEPEGLKKRWSIELCGGTHVERTGDIGLIHIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG  AR +   QDE+++ ++S LK    +V  RV  +  EY +L    
Sbjct: 697 SVAAGVRRIEALTGTAARLYFNRQDERIREISSLLKTVPADVGERVSNLLHEYNRLSQAC 756

Query: 775 AKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + + ++ +   +          I  ++FM  ++  +  ++LK+++D  +K+I SG++  
Sbjct: 757 IELRKKIILSGNTIKNNQEDITIINGISFMGRVVRNILPRDLKALVDDGKKQIGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + +++  K S ++ VT DL D+ NAV+L  + + VLGG GGGGRP MAQSGGP G+KA  
Sbjct: 817 ISVAENGKGSAVVGVTNDLTDKLNAVNLIHILSDVLGGKGGGGRPDMAQSGGPEGDKAVG 876

Query: 888 AIAGVASFLKK 898
           A+A + + L+K
Sbjct: 877 ALAALRASLEK 887


>gi|77164443|ref|YP_342968.1| alanine--tRNA ligase [Nitrosococcus oceani ATCC 19707]
 gi|254433958|ref|ZP_05047466.1| alanyl-tRNA synthetase [Nitrosococcus oceani AFC27]
 gi|123594696|sp|Q3JCK8|SYA_NITOC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|76882757|gb|ABA57438.1| alanyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|207090291|gb|EDZ67562.1| alanyl-tRNA synthetase [Nitrosococcus oceani AFC27]
          Length = 873

 Score =  885 bits (2286), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/906 (42%), Positives = 541/906 (59%), Gaps = 50/906 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +R  FL++F+   HE++PS  L+P NDPTL+FTN+GMV FK +F G+E   Y  
Sbjct: 1   MKSSAELRKIFLDYFRHQSHEIVPSGPLVPANDPTLLFTNAGMVQFKEVFLGREVRAYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+   L
Sbjct: 61  AASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYAWELLTEVLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TV+ ED+EA  +W +  G+S ++  R    DNFWSM ETGPCGPCSEIF+D G
Sbjct: 121 PPERLWVTVFKEDDEAANIWLQEIGVSPERFSRCGAEDNFWSMGETGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS E EG+RY EIWNLVFMQ+++  +     LP+ S+DTGMGLER+A V+Q 
Sbjct: 181 PEIEGGPPGSPEQEGDRYTEIWNLVFMQYDRGKEGRLSPLPRPSVDTGMGLERLAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF++LI A   ++G++       + RVI DH+RS  FLI DGI P+NEGRGY
Sbjct: 241 VHDNYNIDLFRNLIAAITALSGIQ--NQEQTSLRVIADHIRSCVFLIVDGIQPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +P    L+  L  EMG AYPEL + +  +E  L+ E+ERF 
Sbjct: 299 VLRRIIRRAIRHGHKLGLRDPFFYRLVEPLVQEMGEAYPELFRLQSQVERVLKLEEERFN 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL +L+  +  L  D ++ G+  F+LYDT G P+D+  DI   R L  +D+  F 
Sbjct: 359 ETLEQGLKILEQDIIDLS-DAVIPGETIFRLYDTFGFPVDLTADIARERKLT-LDMKGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+ +QR RARA S           + S  +    T+F GY+ LRG              
Sbjct: 417 QAMAKQRKRARAASRFKIE------YGSELQMDLETEFTGYEQLRG-------------- 456

Query: 480 PPIDLTNGVSSIVKAIVQ---QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       + A+ +     E VE+  +G+   VV D+TPFYAEAGGQ+GD G   G
Sbjct: 457 ---------EGQIAALFRLAETMETVEQLSAGESGMVVLDRTPFYAEAGGQVGDRGTLRG 507

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                 +TD  K+     VH   V  G LR   S+   +D + R    +NHSATHLLH A
Sbjct: 508 SNGLFNVTDTHKQGA-AHVHLGEVRLGQLRVGDSIQSEVDRKYRTPTRLNHSATHLLHAA 566

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG  V Q GS +  D LRFD +H + + S +L+ IE  VN  I  NLPV T+IM  
Sbjct: 567 LREVLGEGVIQKGSLVASDRLRFDFSHLEAVQSGQLRQIEHLVNAKIRANLPVETQIMPL 626

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A+ +G  AL G KY ++VRV+ +     G  S  LCGGTHV  TG+I L  I++E  +
Sbjct: 627 QQALDAGVMALFGEKYGEQVRVLRM-----GDFSMELCGGTHVDRTGDIGLFKIINEMGV 681

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AGIRRIEA+TG+ A S +   +  L++L   LK S+ + V ++E++ ++ R+ +    +
Sbjct: 682 AAGIRRIEAVTGEAALSWVEEGEVCLEALMGRLKASRNSAVDKLEQLQQQTRQQEKELQR 741

Query: 777 RKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L         +   +I  +  ++  I  VDSK L++ +D L+ K+ +  ++L G  
Sbjct: 742 LKAKLATTGGADLSIQAQEIRGIKVLAARIDGVDSKTLRATVDQLKGKLITAAVVL-GTV 800

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT +   R  A DL    A+ + GG GGGRP MAQ+GG N +K D A+  
Sbjct: 801 VEDKVVLIAGVTNNATSRIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGRNPDKLDAALDL 859

Query: 892 VASFLK 897
           V  +++
Sbjct: 860 VPKWVE 865


>gi|326403001|ref|YP_004283082.1| alanyl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|325049862|dbj|BAJ80200.1| alanyl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 878

 Score =  885 bits (2286), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/901 (48%), Positives = 594/901 (65%), Gaps = 30/901 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR TFL+FF +NGHE++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSSNDIRATFLDFFARNGHEVVPSAPLVPRNDPTLMFVNAGMVPFKNVFTGHEHRPYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLT++F L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIENAWTLLTRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TVY ED+EA  LWK+I+GL  +KIIRI T+DNFW M +TGPCGPCSEIF+D  
Sbjct: 121 PKEKLLVTVYHEDDEAASLWKRIAGLPDEKIIRIATDDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQF ++    R  LP+ SIDTGMGLER A +LQ 
Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQFLEEPAGVRNPLPRPSIDTGMGLERFAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS +V+    +G + V+HRVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDTDTLRALILASAEVSHTDPDGAHKVSHRVIADHLRATSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  EP +  L+PAL  +MG A+PEL +A+ LI ETL+ E+++F 
Sbjct: 301 VLRRIMRRAMRHAHRLGMREPFIYRLVPALTRQMGVAFPELPRAEALIVETLKLEEQKFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             L+RGL LL+  +  LG  E L G VAFKLYDT+G PLD+ +D L  +   G+D   F 
Sbjct: 361 VMLERGLSLLEDEVQKLGSGEKLPGAVAFKLYDTYGFPLDLTEDALREQHR-GLDHEGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++ EQ++RARA   G G   TE +W  L+++ G T+F+GY                   
Sbjct: 420 ASMAEQKARARAAWAGSGDAATETVWLDLRDRLGGTEFLGYSTEESD------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + + A+V  G     A +GQ+V ++ +QTPFYAE+GGQ+GDTG     G+
Sbjct: 467 ----------ASILAVVVNGAPAGRAEAGQEVALILNQTPFYAESGGQVGDTGTLTAPGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD QKKA  +FVH+  +E G +    S+   +D+  R  +  +HSATHLLH AL  
Sbjct: 517 TIRVTDTQKKAGDLFVHYGTIEEGEIAPGNSVHAEVDHARRGAIRAHHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD++  +P+T AEL+++E  VN  I +N  V TR+M  ++A
Sbjct: 577 ALGPHVTQKGSLNAPDRLRFDISQPRPVTGAELRAVEREVNARIRENAAVETRLMTPDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +  GA AL G KY D VRVVS+   D G   +S  LCGGTHV+ TG+I    I++ES + 
Sbjct: 637 VKRGAMALFGEKYGDEVRVVSMGAGDAGKSAYSIELCGGTHVARTGDIGAFRILAESGVA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+TG+ A +      + L+  A+ LKV+   +  R+  + EE ++ +   A+ 
Sbjct: 697 AGIRRIEAVTGEAALAATEAAADLLEEAAAALKVAPAELPARIAALLEEKKRFERQVAEL 756

Query: 778 KLQLNV--EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           + +L          ++A + F +  + EV  ++LKS+ D++ K + SGI  LV  + E K
Sbjct: 757 QRKLATGGAASEIEEVAGIKFAARNLGEVSPRDLKSLADSILKSMGSGIAALVSTA-EGK 815

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           AS+++ V+ DL DRFNAV L R +++ +GG GGGGRP MAQ+GGP+G KAD+A+A + + 
Sbjct: 816 ASIVVAVSPDLTDRFNAVTLVRAASEAVGGKGGGGRPDMAQAGGPDGGKADEALAAIRAS 875

Query: 896 L 896
           L
Sbjct: 876 L 876


>gi|126737803|ref|ZP_01753533.1| alanyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
 gi|126721196|gb|EBA17900.1| alanyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
          Length = 883

 Score =  885 bits (2286), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/893 (48%), Positives = 573/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ ++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y+ 
Sbjct: 1   MATLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFTNSGMVQFKNCFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+TKE  +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITKELVV 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY  D+EAF++W+K  G+  D+IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 121 PKERLYTTVYHTDDEAFEIWRK-IGVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNEKFADGSMIDLEMQSIDTGMGLERIAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLFK LI+AS  VT     G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 240 THDNYETDLFKSLIEASADVTSTDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 300 VLRRIMRRAMRHASLLGAKDPVMHKLVPALVQKMGAAYPELGQGQALIEETFEQEETRFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD   + + K + L+G+ AFKLYDT+G PLD+ QD L A+    +D   F+
Sbjct: 360 KTLDRGLKLLDDASADMDKGDTLSGETAFKLYDTYGFPLDLTQDALRAK-EIEVDTQGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQ+ ++RA  +GLG     K++F + +  G T+F+GY+                  
Sbjct: 419 AAMKEQKEKSRAGGIGLGEAADVKVYFDILDASGPTEFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + AIV+ G  VE A  G+ V+++ +QTPFY E+GGQ+GD+G    +G 
Sbjct: 461 -----TEKAEGQIAAIVKDGAKVESAGRGETVQIILNQTPFYGESGGQVGDSGVLTVEGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++D  KK EG+F+H A V  G +   +   + +D++ R Q+  NHSATHLLH AL  
Sbjct: 516 TAVVSDT-KKVEGLFLHIAEVTEGQIAVGLGAAMEVDHKRRSQIRANHSATHLLHEALRN 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ EL  +   VND I QN  V TRIM  +DA
Sbjct: 575 ALGEHVAQKGSLNADDRLRFDFSHNKAMSAGELVKVGAEVNDFIRQNTEVTTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              GA AL G KY + VRVVS+         DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 635 RDLGAQALFGEKYGEEVRVVSMGKAETGKGHDGQTYSIELCGGTHVKQTGDIGTFVILGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A ++L  +  ++  +A  LK     V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAAAYAYLEREASRMAEIAGALKAQPAEVMDRLKAMMDERKALQNE 754

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  K Q+ +           +I    F++  +  V  K+L+ ++DA ++ I SG+I+L+
Sbjct: 755 ISNLKQQVAMGGGAAGGSEAKEIGGKKFLAQALQGVSGKDLRGLIDAHKQNIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
               + K +V   VTEDL    +AVD+ + +   +GG GGGGRP MAQ GG +
Sbjct: 815 A-EDDGKVAVAAGVTEDLTSDISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866


>gi|29654361|ref|NP_820053.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|154706669|ref|YP_001424370.1| alanyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|41018200|sp|Q83CQ6|SYA_COXBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830040|sp|A9KG28|SYA_COXBN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29541628|gb|AAO90567.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|154355955|gb|ABS77417.1| alanyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
          Length = 865

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/903 (40%), Positives = 544/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + +R TFL +F++  HE++P SSLIP NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT    L 
Sbjct: 61  VSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL++TV+ +D E+  +W K   ++ ++  R    DNFW M +TGPCGPC+EIF+D G 
Sbjct: 121 PQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGP 180

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS+E +G+RY+EIWNLVFMQ+ +  K     L K S+DTGMGLER+A V+Q  
Sbjct: 181 TISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLF++L++A   +   +    +  + RVIVDH+RS +FLIADG++P+NEGRGYV
Sbjct: 241 HDNYDIDLFQYLLKALRTLLKTED--LHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L   L  EMG AYP L +++ LIE+T++ E+ +F  
Sbjct: 299 LRRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEIQFSN 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL +LD  ++ L   +I  G++ F+LYDT+G P D+  DI   R    +D   F++
Sbjct: 359 TLTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDF-VMDYAGFDK 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR +++     + +      +       G TQF+GY+ L                 
Sbjct: 417 AMERQREQSQQAHQFVAN------YAQKASIGGETQFVGYETLNS--------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V +++Q  + +      +K  VV D+TPFYAE+GGQ+GD G    +   
Sbjct: 456 --------QANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+ + I++H   + +G L  +  +   +D      +  NHSATHLLH AL  +
Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDVSR-FDIMRNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +    LRFD +H+KP+T  EL+++E  VN  I  NL     +M  E+A 
Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G +Y   VRV+ +     G  S+ +CGGTH   TGEI L  IVSES   AGI
Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  ++   +++L+SL+  LK ++ N+  ++ +I E++RKL+   AK K +
Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740

Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  + L         + D+  ++  +  VD + L++++D L++K+    I+L  I +E +
Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT++ L+ FNA +L    A+ + GG  GGRP +AQ  G      + A+A V  +
Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV-GGRSGGRPDLAQGAGERPENLEAALAAVPKW 858

Query: 896 LKK 898
           ++K
Sbjct: 859 IEK 861


>gi|126726568|ref|ZP_01742409.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
 gi|126704431|gb|EBA03523.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
          Length = 886

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/911 (47%), Positives = 584/911 (64%), Gaps = 40/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR++FL +F K GH+++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MQTLNDIRSSFLSYFDKQGHQVVDSSPLVPRNDPTLMFVNSGMVQFKNMFTGAETRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFKE AI  AW+++TK   +
Sbjct: 61  AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKEDAILFAWEMVTKVLGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY  D+EA  +WKK++GLS D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRLYVTVYHTDDEAANIWKKVAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++EIWNLVFMQ  Q       +LPK SIDTGMG+ER+A +LQ 
Sbjct: 181 EHIWGGPPGSPEEDGDRFVEIWNLVFMQNVQHEDGSMTLLPKQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   T    +G    +HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 241 TNDNYSTDLMRSLIEASANETSSDPDGAGKTHHRVIADHLRSTSFLLADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL ++MG+AYPEL QA+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVSQMGAAYPELQQAQSLITETLKQEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  ++ LG+   L+G  AFKLYDT G PLD+ QD L  +GL G+D   F+
Sbjct: 361 QTLERGLRLLDDEVAGLGEGADLSGSAAFKLYDTFGFPLDLTQDALREKGL-GVDKDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA  +G G      +WF + +++G T F+GYD                  
Sbjct: 420 AAMAEQKAKARAAWVGTGETADASLWFDIADEHGVTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+++ G  V+  + G  V++V +QTPFYAE+GGQ+GD G       
Sbjct: 462 -----TEVAEGQVLALIKDGVSVDATIVGDSVQIVMNQTPFYAESGGQIGDAGTLKTANG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD +K A  +F+HH  V  G +  + +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 LVEVTDTRKNAG-LFIHHGKVVSGTVSKDEAAELVVDHARRGAIRANHSATHLLHEALRG 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HVSQ GS    D LRFD +H+  I+  +L+ +E+ VN  I QN  V TRIM  +DA
Sbjct: 576 ALGDHVSQRGSLNAADRLRFDFSHNAAISQDDLRKVEEEVNAYIRQNTEVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          +G  +S  LCGGTHV  TG+I    I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGQQSGSGKGANGETYSLELCGGTHVGQTGDIGTFVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TG  A ++L  QD+++ ++A  LK     V  RV+ + +E + LQ 
Sbjct: 696 DSASSAGVRRIEALTGAEAFAYLRDQDQRISTVAGMLKAQPEEVGARVKALMDERKSLQN 755

Query: 773 IHAKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             A+ +  L +         +  ++  V F + +++ V  K+L +++D  ++ + SG ++
Sbjct: 756 QLAEARRSLAMSGGGQSAPAAAIEVGGVKFHAQVLTGVTGKDLPALVDEHKESLGSGAVL 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L+      KA+V   VT DL++R +AVDL + +   LGG GGGGRP MAQ GG +   ++
Sbjct: 816 LIA-DTGGKAAVAAGVTADLVERISAVDLVKAAVVELGGKGGGGRPDMAQGGGASAENSE 874

Query: 887 QAIAGVASFLK 897
            AI    + LK
Sbjct: 875 NAIKAATAVLK 885


>gi|170751975|ref|YP_001758235.1| alanyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
 gi|205830144|sp|B1M0N0|SYA_METRJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170658497|gb|ACB27552.1| alanyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
          Length = 892

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/914 (50%), Positives = 598/914 (65%), Gaps = 40/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F K GHE++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFAKAGHEVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGMEKRAYDR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +D+EA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 KPDKLLVTVYADDDEAAGLWKKIAGFSDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG P    E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PALQGGPPGSPDEDGDRFLEFWNLVFMQYEQLEPGVRNPLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E   + ++RVI DHLR+SSFL+ADG+LP NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPATMASYRVIADHLRASSFLVADGVLPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  EP M  L+P L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAEILGAREPTMFRLVPTLVREMGQAYPELMRAESLIAETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +LD     L + + L+G+ AF LYDT+G PLD+ QD L ARG  G+D  +F 
Sbjct: 361 RTLERGLSILDAESRDLREGDKLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTDAFA 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+  AR    G G   TE +WF L+E+ GAT+F+GY+                  
Sbjct: 420 AAMQRQKQAAREAWKGSGEAATETVWFGLRERVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     IV A+++ G  V    +GQ   V+ +QTPFY E+GGQ+GDTG  +  G+
Sbjct: 462 -----TENAEGIVTALLRDGAEVTTLAAGQTGLVLVNQTPFYGESGGQVGDTGLILAPGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD QKK   +FVHH  VE G L  +  + L +D   R+ +  NHSATHLLH AL  
Sbjct: 517 RARVTDTQKKLGDVFVHHVTVEEGTLSLDQPVELKVDNVRRKAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD++H KPI + EL  +ED  N ++ QN PVVT++M  +DA
Sbjct: 577 VLGDHVAQKGSLVSPERLRFDISHPKPIEADELARVEDIANAVLLQNAPVVTKLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV--------HSSALCGGTHVSSTGEIMLLYIV 711
           IASGA AL G KY D VRVVS+     G          S  LCGGTH + TG+I  + IV
Sbjct: 637 IASGARALFGEKYGDEVRVVSMGLPVDGEAAQPRARNFSVELCGGTHAARTGDIGAITIV 696

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES++ AG+RRIEA+T   AR H   +   L +LA  LK        R+  + E+ R+L+
Sbjct: 697 AESAVGAGVRRIEALTADAARRHRAEEARTLAALAGILKAPVSEAPDRLTALMEDRRRLE 756

Query: 772 LIHAKRKLQLNV-------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
              A+ + +L +             +I  V F   +I  +D ++LK ++D  +K++ SGI
Sbjct: 757 RELAETRRKLAMGGEGGPGSGAQQTEIGGVAFRRSVIEGLDMRDLKPIVDEEKKRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + +VGI  + KA +++ VT+DL  R++AV L R  A  LGG GGGGR  MAQ+GGPNG  
Sbjct: 817 VAVVGIGPDGKAGLVVGVTDDLTARYDAVGLVRAGAGALGGKGGGGRRDMAQAGGPNGAG 876

Query: 885 ADQAIAGVASFLKK 898
           A+ A+  VA  L +
Sbjct: 877 AEAALDAVAQALTE 890


>gi|89071223|ref|ZP_01158404.1| alanyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
 gi|89043236|gb|EAR49465.1| alanyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
          Length = 885

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/893 (48%), Positives = 586/893 (65%), Gaps = 38/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL++F++ GHE++ SS L+P NDPTLMFTNSGMV FKN+FTG E   YQ 
Sbjct: 1   MTSLADIRSTFLDYFRRQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFK  AI  AW+++TKE D+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKADAIPFAWEMVTKELDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TVY +D+EA +LW+K++GL  ++IIRI T+DNFW M  TGPCGP SEIFFD G
Sbjct: 121 PAERLLVTVYHDDDEAAELWRKVAGLPDERIIRIATDDNFWMMGPTGPCGPSSEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E   GG PGS  E+G+R+IEIWNLVFMQFEQ     R  L   SIDTGMGLER++++LQ 
Sbjct: 181 EKFWGGPPGSPEEDGDRFIEIWNLVFMQFEQFEDGTRRELAAQSIDTGMGLERISSLLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             N ++ DLF+ +I AS   +    +  ++ +HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 241 TNNVFETDLFRAIIDASAHASNTSTDEAHLTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG ++PLM  L+PAL  +MG+AYPEL + + +IE+TL +E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGASDPLMHRLVPALVQQMGAAYPELREQQAMIEDTLETEEVRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD  ++ L   + L G+ AFKLYDT+G PLD+ +D L  RG   +D+  FN
Sbjct: 361 NTLDRGLKLLDDEVARLETGKNLPGETAFKLYDTYGFPLDLTEDALRERG-ISVDLPGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++EEQ+ +ARA   G G    + +WF + +++G T F+GYD                  
Sbjct: 420 ASMEEQKRKARAAWSGSGEAADQTVWFDIADEHGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G  VE A +G +V++V +QTPFYAEAGGQ+GD G    +  
Sbjct: 462 -----TETAEGQVLALVRDGAPVERAGAGAQVQIVLNQTPFYAEAGGQVGDAGTLTTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD +K A  ++VH A V  G +       L +D+  R  +  NHSATHLL+ AL  
Sbjct: 517 TAEITDCRKIAG-VYVHFARVTAGEIAAGEGARLEVDHARRGAIRANHSATHLLNEALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS   PD LRFD +H+K + + ++ ++E  VN++I QN PV TRIM  ++A
Sbjct: 576 VLGDHVAQRGSLNAPDRLRFDFSHNKAMGADDIAAVEREVNELIRQNAPVTTRIMTPDEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+         DG  +S  LCGGTHV+ TG+I L  + +E
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGIADTGKGLDGKTYSIELCGGTHVARTGDIGLFALTTE 695

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           ++  AG+RRIEA+TG+ A + L  +D  L  + + LK     V GRV  + +E + L   
Sbjct: 696 AASAAGVRRIEALTGEAAMAELRRRDRSLGEVEALLKCGPDEVAGRVRALMDERKALANE 755

Query: 774 HAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++ + QL       E  +  +I  + F++ ++S V  K+L S++D ++  + +G ++L+
Sbjct: 756 VSQLRRQLAMSGGPAEGPAAREINGMRFVAQVLSGVTGKDLPSLIDGMKSDLGTGAVLLI 815

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
               + KA+V   VT DL++R +AVDL R +   LGG GGGGRP +AQ GG +
Sbjct: 816 A-DTDGKAAVAAGVTADLVERVSAVDLVRAAVAELGGKGGGGRPDLAQGGGKD 867


>gi|319408736|emb|CBI82393.1| Alanyl-tRNA synthetase [Bartonella schoenbuchensis R1]
          Length = 889

 Score =  884 bits (2284), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/911 (51%), Positives = 628/911 (68%), Gaps = 38/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+ IR+TFL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+     
Sbjct: 1   MNSVNKIRSTFLDYFHRNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQLSCSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF  YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ A +LW+KISGL  +KIIRI TNDNFW M +TGPCGPCSEIF+D G
Sbjct: 121 SKDKLLVTVYHSDDVAAQLWRKISGLPDEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ +K +R  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DKIFGGPPGSADEDGDRFVEIWNLVFMQYEQVSKDKRIELPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF  LI+ S+++TG++  G+ +V+HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFSALIRESQRITGVEATGDFVVSHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM YA  L   E LM  L+PAL  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRYAHFLDAKELLMWRLVPALIREMGQAYPELVRAESLISEILKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+    HL + +  NG+VAFKLYDT+G PLD+ QD L  RG   +D+ +FN
Sbjct: 361 KTLERGLRLLNEESVHLKEGDCFNGEVAFKLYDTYGFPLDLTQDALRHRG-ISVDVNAFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++ ARA+  G G   TE +WFS++++ G T+F+GY+                  
Sbjct: 420 KAMEHQKAEARANWSGSGESVTETVWFSVRDQVGTTEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ A++  GEIV++  SGQK  +V +QTPFY E+GGQ+GD+G   G+  
Sbjct: 462 -----TEKAEGVITALICDGEIVDKVSSGQKAMLVVNQTPFYGESGGQIGDSGIISGENF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKKA+G+FVH   V+ G  +T   + L +D   RR++  NHSATH+LH AL  
Sbjct: 517 IFEVHDTQKKAKGVFVHIGEVKSGQAKTHDCVELAVDCVRRRKIRANHSATHILHKALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS ++PD LRFD +HS  I   +LK IED  N+I+ QN  V+TR+M  +DA
Sbjct: 577 TLGDHVVQKGSFVSPDRLRFDFSHSGQILLKDLKKIEDLANEIVLQNSEVITRLMTVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY+D VRVVS+             S  LCGGTHV  TGEI L++IVS S
Sbjct: 637 ISEGAIALFGEKYSDEVRVVSMGKRHEEIGEKDYWSIELCGGTHVHRTGEIGLIHIVSVS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLI 773
           S+ AG+RRIEA+TG  AR +   Q ++L  +A+ LK+    N+   ++ + ++YR++   
Sbjct: 697 SVAAGVRRIEALTGTAARLYFRNQYKQLYDIAALLKMPSVFNLSKNIQGLLDDYRRIGKE 756

Query: 774 HAKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +  + ++   D +          I  ++FM  +I  +  K+LK+++D+ +K+I SG++ 
Sbjct: 757 LSNLRTKIAFNDGATKDNKADIKIINGISFMGRVIQNISPKDLKTLVDSGKKQIGSGVVA 816

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +GIS+  K SV++ VT+DL+DR +AVDL R+ +  LGG GGGGRP MAQ+GGP G+KA 
Sbjct: 817 FIGISENGKGSVVVGVTDDLVDRLSAVDLVRIVSDTLGGKGGGGRPDMAQAGGPQGDKAY 876

Query: 887 QAIAGVASFLK 897
            AIA +  FL+
Sbjct: 877 DAIAALEVFLE 887


>gi|258404449|ref|YP_003197191.1| alanyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257796676|gb|ACV67613.1| alanyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 880

 Score =  884 bits (2284), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/908 (41%), Positives = 542/908 (59%), Gaps = 43/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLE+F + GHE++ SS L+P +DP+L+FTN+GMV FK +F GQ+K  Y  
Sbjct: 1   MVTAAEIRQRFLEYFARQGHEIVKSSPLVPKDDPSLLFTNAGMVQFKKVFLGQDKRNYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK  A+  AW  LT+E  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAVDFAWRFLTEELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY +VY ED+EA++LWK+I+GL  ++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKDRLYASVYREDDEAYELWKEIAGLPDERIYRLGEKDNFWSMGDTGPCGPCSEILIDQG 180

Query: 181 ECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +  G        E +R++EIWNLVFMQF++        LP+ SIDTGMGLER+A V Q
Sbjct: 181 SHMSCGPECEIGVCECDRFLEIWNLVFMQFDRDASGTMTPLPQPSIDTGMGLERIAAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF  LI+ + +  G+ Y  +  +N   RVI DH R+ +F++ADGILP+NEG
Sbjct: 241 GVYSNFDTDLFSGLIRTTAERAGVVYGKDEEINTALRVIGDHSRAVAFMLADGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RL+G  +P +  +   + +EMG  YPEL +    + + +R E+E
Sbjct: 301 RGYVLRRLIRRAFRFGRLIGLRDPFLFDVCSQVVSEMGDDYPELHETAAFMVKVVRQEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RFG TLD+GL LL+  L  L       + G VAFKLYDT G P+DI+ D+  ARG   +D
Sbjct: 361 RFGTTLDKGLALLEEELESLQGAGQTQVPGGVAFKLYDTFGFPIDIVNDVAEARGFT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + ++ Q+ R++A   G G+      + +L E    + F+GY+ L+          
Sbjct: 420 EAGFQEHMQAQKERSKAAWSGSGATDMAARFVALLEAGVQSDFVGYETLQS--------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                         +S + A+++  G+ V+E  +G+   +V  +TPFY E+GGQ+GD+G 
Sbjct: 471 --------------TSRIAALLKDDGQEVQELAAGENGYLVTARTPFYGESGGQVGDSGR 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            IG      + D  K A  + VH   V++G L  +    L +D   R   + NH+ THLL
Sbjct: 517 VIGPRGDGAVLDTIKPAAQLTVHSITVKQGSLAVDDEAELIVDEGERVATARNHTVTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +  D LRFD+TH + +T+ E++++ED VN  I  + PV +  
Sbjct: 577 HAALREVLGEHVKQAGSLVASDRLRFDLTHIQALTAEEIQAVEDKVNQSILADTPVESAH 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+   A+  GA AL G KY D VRV+ +        S  LCGGTH+ +TG+     I+SE
Sbjct: 637 MDYSQAVQGGAVALFGEKYEDEVRVIDIPG-----VSRELCGGTHLRATGQAGFFCILSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +++ AG+RRIEA TG +A      Q  +L+  A  LK  Q  + GR++++ E+ + L+  
Sbjct: 692 AAVSAGVRRIEAATGWQAVRTFTEQRTRLREAAQLLKAPQTEITGRIQDLQEQLKSLRKE 751

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               + QL             ++  +  ++  +   D K L+ +MD ++ K+ SG+++L 
Sbjct: 752 KEALEGQLQSAKGGDLMSQVEELGGIPVLTAEVEAPDVKTLRGMMDDVRSKLSSGVVLLA 811

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              +E KA +++ V++DL DRF A  L +  A+ + GG GGGRP +AQ+GG N      A
Sbjct: 812 A-KQEAKAMLILFVSQDLHDRFTAPGLIKQVAQEI-GGSGGGRPDVAQAGGGNPEGIPAA 869

Query: 889 IAGVASFL 896
           +  + + +
Sbjct: 870 LDSLRNLV 877


>gi|296135261|ref|YP_003642503.1| alanyl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295795383|gb|ADG30173.1| alanyl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 917

 Score =  884 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/953 (39%), Positives = 531/953 (55%), Gaps = 96/953 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            NVS IR  FL +F+  G   + SSSL+P NDPTL+FTNSGMV FK++F GQ++  Y+  
Sbjct: 1   MNVSDIREKFLAYFESQGSTRVASSSLVPGNDPTLLFTNSGMVQFKDVFLGQDQRPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYAEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQE------------------ 215
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQFE+    E                  
Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFERYAAGEERFETEDQATARKQAVEA 240

Query: 216 --------------------RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
                               +  LPK  +DTGMGLER+A VLQ   +NY+IDLF+ LI+A
Sbjct: 241 EGGIGLVSKDGEGYKLAVFRQKPLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQALIKA 300

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
           + + T     G+   + +VI DH+R+ +FLI DG++P NEGRGYVLRRI RRA+ +   L
Sbjct: 301 AARETATADLGH--ASLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRINRRAIRHGYKL 358

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G  +P    ++P L  +MG+AYPEL +A+  + E L++E+ RF +T++ G+ +LD  L+ 
Sbjct: 359 GVRQPFFYKMVPDLVAQMGAAYPELAEAQGRVAEVLQAEEARFFETIEHGMGVLDTELAA 418

Query: 376 LGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           L      +L G++AFKL+DT G PLD+ QD+    G+  +D  +F+ A+  QR +ARA  
Sbjct: 419 LRAAGGNLLAGELAFKLHDTFGFPLDLTQDVCREHGMK-VDEAAFDVAMARQREQARAAG 477

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                   + +          T+F GY+ L                          + V 
Sbjct: 478 KFKMQAALDYV-------GDKTRFDGYEHLLVK----------------------EARVV 508

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKA 550
           A+ + G  V    +G    VV D+TPFYAE+GGQ+GD+G         +R  + D QK  
Sbjct: 509 ALYKDGTSVPTLQAGDPGVVVLDRTPFYAESGGQVGDSGVLFEGDSCDLRFVVHDTQKLQ 568

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             +F HH  +E G L+    +   +D + R  +  NHS THL+H AL  +LG HV Q GS
Sbjct: 569 ADVFGHHGTLESGSLKVGEIVAAQVDGERRLAVMRNHSVTHLMHKALRLVLGDHVQQKGS 628

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            +  D  RFD  H  P++  E+  +E  VN+ I  N     R+M  ++A   GA  L G 
Sbjct: 629 LVDADKTRFDFAHDAPMSDDEIARVERLVNEEILANAATQARVMPIDEAKGMGAMMLFGE 688

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
           KY D VRV+ +        S  LCGGTHV+ TG+I L  IV E  + AGIRR+EA+TG  
Sbjct: 689 KYGDTVRVLDIG------TSRELCGGTHVARTGDIGLFKIVFEGGVAAGIRRVEAVTGLN 742

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED----- 785
           A + +  Q+  +  L+  LK        +VE++ E+ R+L+    + K Q          
Sbjct: 743 ALAFVQKQNALVARLSRTLKAPAEESAAKVEQLLEQQRQLEKDLTQLKAQQAAAQGDALV 802

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                I   + +   +  +D+K L+  +D ++ K+++ +++L     + K  +   V+ D
Sbjct: 803 SQAFTIGGTSVLLARMDGLDAKGLREAVDRIKSKLKTAVVLLASREGD-KVQLAAGVSAD 861

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            + +  A DL  ++A+ + GG GGGRP  A +GG    + D A+A   S L++
Sbjct: 862 RVGQIKAGDLVSVAAQAV-GGKGGGRPDFAMAGGTQPEQIDAALAQAKSLLQQ 913


>gi|149202694|ref|ZP_01879666.1| alanyl-tRNA synthetase [Roseovarius sp. TM1035]
 gi|149143976|gb|EDM32010.1| alanyl-tRNA synthetase [Roseovarius sp. TM1035]
          Length = 893

 Score =  884 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/899 (48%), Positives = 581/899 (64%), Gaps = 41/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL FF++N H ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 3   MPTLNEIRSTFLSFFERNDHRVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVEHRDYVR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AWDLLTK+F +
Sbjct: 63  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA  +WKK +GLS D+IIRI T+DNFWSM  TGPCGPC+EIF+D G
Sbjct: 123 DKSKLLVTVYHTDDEAANIWKKYAGLSDDRIIRIKTDDNFWSMGSTGPCGPCTEIFYDHG 182

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 183 DSIWGGPPGSAEEDGDRFIEIWNLVFMQNERFEDGSMRALDMQSIDTGMGLERIGALLQG 242

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFL+ADG++P+NEGRGY
Sbjct: 243 KHDNYDTDLMRSLIEASAHATSQDPDGPGRVHHRVIADHLRSTSFLMADGVMPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG A+PEL +A+ +IEETL+ E+ RF 
Sbjct: 303 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVAQMGQAFPELGRAQAMIEETLKLEETRFK 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  LS L +   L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 363 QTLERGLRLLDDELSDLAEGAALPGVTAFKLYDTYGFPLDLTQDALREKGR-DVDTAGFD 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G    + +WF + E+ G T F+GYD                  
Sbjct: 422 AAMAEQKAKARAAWAGTGEAADQAVWFDIAEEKGTTDFLGYD------------------ 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V+ G  V  A  G+ V++V +QTPFYAE+GGQ+GD+G    +  
Sbjct: 464 -----TERAEGQIVALVRDGVRVSAATMGESVQIVLNQTPFYAESGGQVGDSGLLKTETG 518

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++++TD  KK  G+FVH A+VE G ++   +  L + +  R  +  NHSATHLLH AL  
Sbjct: 519 QVRVTDT-KKVAGVFVHIAVVETGEIKAGQAAQLEVSHARRSAIRANHSATHLLHEALRG 577

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++AEL+ +E  VND I QN PV TRIM  +DA
Sbjct: 578 ALGEHVAQRGSLNAEDRLRFDFSHAKALSAAELERVEREVNDYIRQNAPVETRIMAPDDA 637

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHV  TG+I +   ++
Sbjct: 638 RALGAQALFGEKYGDEVRVVSMGQAEGSGKGADGRTYSIELCGGTHVRRTGDIGVFVALA 697

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES+  AG+RRIEA+TG  A  +L GQ  +L  +AS LK    +V  RV+ + EE R L  
Sbjct: 698 ESASSAGVRRIEALTGAAAFDYLSGQAARLGQVASDLKARPEDVAERVKVLMEERRALAN 757

Query: 773 IHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             A+ + +L +             ++  V  ++ +++ V  K+L  ++D  + ++ SG +
Sbjct: 758 EVAQLRRELAMSGGAGQGGGAEAREVGGVKLIAQVLTGVQGKDLPPLIDEHKARLGSGAV 817

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L+      K +V   VTEDL DR +AV++ R +   LGG GGGGR  MAQ GG + + 
Sbjct: 818 LLIA-DTGGKVAVAAGVTEDLTDRISAVEMVRAAVAELGGKGGGGRADMAQGGGTSMDG 875


>gi|161830958|ref|YP_001596677.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 331]
 gi|205830041|sp|A9NCN7|SYA_COXBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161762825|gb|ABX78467.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 331]
          Length = 865

 Score =  884 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/903 (40%), Positives = 543/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + +R TFL +F++  HE++P SSLIP NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT    L 
Sbjct: 61  VSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL++TV+ +D E+  +W K   ++ ++  R    DNFW M +TGPCGPC+EIF+D G 
Sbjct: 121 PQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGP 180

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS+E +G+RY+EIWNLVFMQ+ +  K     L K S+DTGMGLER+  V+Q  
Sbjct: 181 TISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLTAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLF++L++A   +   +    +  + RVIVDH+RS +FLIADG++P+NEGRGYV
Sbjct: 241 HDNYDIDLFQYLLKALRTLLKTED--LHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L   L  EMG AYP L +++ LIE+T++ E+ +F  
Sbjct: 299 LRRIIRRAVRHGYKLGQEEPFFYQLTKPLLEEMGGAYPLLRKSQALIEQTIKQEEIQFSN 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL +LD  ++ L   +I  G++ F+LYDT+G P D+  DI   R    +D   F++
Sbjct: 359 TLTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDF-VMDYAGFDK 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR +++     + +      +       G TQF+GY+ L                 
Sbjct: 417 AMERQREQSQQAHQFVAN------YAQKASIGGETQFVGYETLNS--------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V +++Q  + +      +K  VV D+TPFYAE+GGQ+GD G    +   
Sbjct: 456 --------QANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+ + I++H   + +G L  +  +   +D      +  NHSATHLLH AL  +
Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDVSR-FDIMRNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +    LRFD +H+KP+T  EL+++E  VN  I  NL     +M  E+A 
Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G +Y   VRV+ +     G  S+ +CGGTH   TGEI L  IVSES   AGI
Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  ++   +++L+SL+  LK ++ N+  ++ +I E++RKL+   AK K +
Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740

Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  + L         + D+  ++  +  VD + L++++D L++K+    I+L  I +E +
Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT++ L+ FNA +L    A+ + GG  GGRP +AQ  G      + A+A V  +
Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV-GGRSGGRPDLAQGAGERPENLEAALAAVPKW 858

Query: 896 LKK 898
           ++K
Sbjct: 859 IEK 861


>gi|260549963|ref|ZP_05824178.1| alanyl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260406955|gb|EEX00433.1| alanyl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 883

 Score =  884 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 528/913 (57%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 6   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 66  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 125

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 126 LPKDRLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 186 SEIFFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 303

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL
Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARRDVIEATL 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L  D+ + G   FKLYDT+G P D+  DI   RG  
Sbjct: 364 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 422

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + S+ +  G TQF GY           
Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGY----------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                       +       + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 ------------INTTGQGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D +K     FVH  IV  G L+   ++   +    R   + NHSATH
Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKANQNVEAIVKADIREATARNHSATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N PV T
Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTPVTT 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 632 ELLDIEAAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    L
Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSAL 751

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     +        IA    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 752 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 812 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869

Query: 886 DQAIAGVASFLKK 898
            Q IA + ++L++
Sbjct: 870 GQVIAALPAWLEQ 882


>gi|197119994|ref|YP_002140421.1| alanyl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|197089354|gb|ACH40625.1| alanyl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 875

 Score =  884 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/906 (42%), Positives = 539/906 (59%), Gaps = 43/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F  FFQK GH L+ SS+LIP NDPTL+FTN+GM  FK++F G EK  Y   
Sbjct: 1   MTGKEIRAQFFNFFQKKGHALVESSNLIPRNDPTLLFTNAGMNQFKDVFLGMEKRDYLRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L 
Sbjct: 61  VSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTKELGLS 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA  +W    G+  ++I R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 KDRLYVTVYTDDDEAADIWHNQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWN VFMQF +        LPK S+DTGMGLER++ V+Q 
Sbjct: 181 GTGCGSPDCAVGCDCDRYMEIWNNVFMQFNRGKDGVLTPLPKPSVDTGMGLERISAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DL + +I+  EQV+G KY  +  + V+ RVI DH R+ +FLI DG+LP+NEGR
Sbjct: 241 VTSNYDTDLLQGIIRHIEQVSGKKYRDDEKDDVSMRVIADHARAVTFLICDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG  EP++  ++ A+   MG AYPEL++ +  +++ + +E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGIAEPVLFRIVDAVNMMMGDAYPELLEREHYVKKVILAEEER 360

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+   +      +++++G+V FKLYDT G P+D+  DI+ + G   +D 
Sbjct: 361 FIETLDRGLAILNEETAALKAKGEKVISGEVIFKLYDTFGFPVDLTADIVESEGFT-LDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR +AR +  G G      I+  L      T F+GY               
Sbjct: 420 DGFALCMEKQRVKARENWKGSGEQGLADIYKELHGTGITTDFLGYSE------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AIV+ G +VEEA +G ++E+V   TPFY E+GGQ GDTG   
Sbjct: 467 ----------QTAFSTISAIVKGGTLVEEASAGDEIEIVTAATPFYGESGGQAGDTGTIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +++T   +    + VH   V  G +RT  +  L I   NR   + NH+ATHLL  
Sbjct: 517 TGSGHIEVTGSTRPFTDLIVHRGRVVSGAVRTGEAADLKITVANRAATARNHTATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +TPD LRFD TH  P+T  E++ +E  VN  I  N  V +R M 
Sbjct: 577 ALREVLGDHVKQAGSLVTPDRLRFDFTHFTPMTQEEIRRVEILVNGHIMGNSTVESREMP 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             DA+A+GA AL G KY D V          G  SS LCGGTHV   GEI    I+SE+ 
Sbjct: 637 AADALAAGATALFGEKYGDVV-----RVVKVGDVSSELCGGTHVHGAGEIGFFKIISEAG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA TG  A + + G +++ + +A+ LK   G V+ +VE++    R+LQ    
Sbjct: 692 IAAGVRRIEAQTGSGALAVVHGMEDEQRGIATLLKAEGGTVLDKVEKLVAGQRELQKELE 751

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN    +       +   +  +S  +   D+K L+ + D L+++I SGII+L G 
Sbjct: 752 TLQARLNASKSADLIQQVREQNGIKILSVKVDG-DAKGLRELSDTLKQRIGSGIIVL-GT 809

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S   +A++L+ VT DL  R+ A D+ +  A ++ GG GGG+P +AQ+GG       +A+ 
Sbjct: 810 SDAARANLLVAVTADLSARWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPEHLAEALE 868

Query: 891 GVASFL 896
            V   +
Sbjct: 869 AVYQIV 874


>gi|89092119|ref|ZP_01165074.1| alanyl-tRNA synthetase [Oceanospirillum sp. MED92]
 gi|89083854|gb|EAR63071.1| alanyl-tRNA synthetase [Oceanospirillum sp. MED92]
          Length = 854

 Score =  884 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/902 (42%), Positives = 522/902 (57%), Gaps = 60/902 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FLEFF++ GHE++ SSSLIP NDPTLMFTN+GMV FK++F G +K  Y   
Sbjct: 4   MTSAEIRQAFLEFFKQQGHEIVASSSLIPANDPTLMFTNAGMVQFKDVFLGTDKRNYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW  LT+   L 
Sbjct: 64  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWTFLTETLGLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++TV+  D+EA ++WK+  G+  ++  ++   DNFWSM +TGPCGPC+EIFFD G 
Sbjct: 124 KERLWVTVHHSDDEAERIWKEEIGVDPERFSKL-DEDNFWSMGDTGPCGPCTEIFFDHGA 182

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS  E+G+RYIEIWN+VFMQ+ +    E   LPK S+DTGMGLER+A V+Q  
Sbjct: 183 DVWGGPPGSPEEDGDRYIEIWNVVFMQYNRSADGEMTPLPKPSVDTGMGLERIAAVMQNV 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID+F++L++A+    G      +  + RVI DH+RS SFLI DG+LP+NEG GYV
Sbjct: 243 HSNYEIDMFQNLLKATAAAVGTTDM--DNKSLRVIADHIRSCSFLIVDGVLPSNEGAGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG   P    L+ AL  EMG AYPEL + +  +E  L  E+E+F K
Sbjct: 301 LRRIIRRAVRHGNKLGAKGPFFNQLVEALVKEMGEAYPELAEKQSQVERVLLKEEEQFAK 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD G+ LL   +  L    ++ G+  FKLYDT+G P D+  D+     L  ID   F +
Sbjct: 361 TLDHGMRLLHEAIEGLD-GTVIPGETVFKLYDTYGFPHDLTADVAREHELT-IDEEGFER 418

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E QR RARA       G     +    +  G T F GY+LL                 
Sbjct: 419 EMEAQRERARAA------GKFSVDYNDAIKLEGETSFTGYELLESDA------------- 459

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    S V A+ ++GE V+   +G+   VV D+TPFYAE+GGQ+GDTG A+     
Sbjct: 460 ---------STVVALFKEGEAVDTLQTGETGLVVLDETPFYAESGGQVGDTG-ALNASAS 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +       K     +HH  VE+G L     +   +D   R+ +++NHSATHLLH AL  +
Sbjct: 510 VFAVTNCTKEGKNNLHHGSVEQGSLSVGDKVAPQVDAVRRKAIALNHSATHLLHEALRVV 569

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS      LRFD +H + +T  ++  +E  VN  I  N  VVT IM  E A 
Sbjct: 570 LGEHVQQKGSLNDDQRLRFDFSHFEAVTPEQIAEVEALVNQQIRDNSEVVTEIMEIEAAK 629

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GAAAL G KY+D VRV+++    GG  S  LCGGTH   TG+I LL I SE  + AGI
Sbjct: 630 AKGAAALFGEKYDDVVRVLTM----GGDFSVELCGGTHAKRTGDIGLLKITSEGGVAAGI 685

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RR+EA+TG  A  +   Q              +G    +++E   + R+L+    + K +
Sbjct: 686 RRVEAVTGAVALDYFADQ--------------KGQFEAKLQEQQAKTRQLEKELEQMKAK 731

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          +   +  V  ++  +  V+ K L+  +D L+ K+ SG+++L     + K
Sbjct: 732 LAAAKGADLVSNAVDVKGVKVLAAKLEGVEPKALRDTIDQLKNKLGSGVVVLA-TESDGK 790

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            ++   VT++L  +  A DL +     L GG GGGRP  AQ GG +    + A+  VA  
Sbjct: 791 IALAAGVTKELTSKVRAGDLIKELTAKL-GGKGGGRPDFAQGGGTDLQALEGALDSVAGL 849

Query: 896 LK 897
           ++
Sbjct: 850 VE 851


>gi|163741065|ref|ZP_02148457.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
 gi|161385418|gb|EDQ09795.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
          Length = 883

 Score =  883 bits (2282), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/893 (48%), Positives = 575/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN FTG E   Y+ 
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEIVSSSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF++WKK  G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKK-VGVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGTMKALDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS  VT +   G+  V+HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL +A+ +IEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQPMIEETLHQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L +   L G  AFKLYDT G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELAGLDEGAPLPGAAAFKLYDTFGFPLDLTQDALREKGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + ++ G T F+GY+                  
Sbjct: 419 SAMAEQKAKARAAWSGSGESADSTIWFDVADQAGTTDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A++  G  V EA  G  V+VV +QTPFYAE+GGQ+GD+G    DG 
Sbjct: 461 -----TEAAEGQIMALLVDGAQVAEAGVGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD  KKA G+F+H   VE G++    +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 516 VVRVTDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHLRRSAIRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ EL+ +  +VN  I QN  V TRIM  +DA
Sbjct: 575 ALGDHVAQRGSLNADDRLRFDFSHNKALSAEELRRVAVDVNRFIRQNTVVETRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+        +DG  +S  LCGGTHV  TG+I    I+S+
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGEAATGKGQDGNTYSIELCGGTHVRQTGDIGTFVILSD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A +HL  +  ++  +A+ LK     V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAEAFAHLDREALRMAEIANSLKAQPEEVMDRLKALMDERKALQNE 754

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++ K Q+ +           ++    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 755 VSQLKQQVAMGGGAGGASETKEVGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +   K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG +
Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866


>gi|328543180|ref|YP_004303289.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Polymorphum gilvum
           SL003B-26A1]
 gi|326412926|gb|ADZ69989.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Polymorphum gilvum
           SL003B-26A1]
          Length = 887

 Score =  883 bits (2282), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/894 (52%), Positives = 612/894 (68%), Gaps = 38/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F KNGH+++ S  L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSAFLDYFAKNGHQVVESGPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRDYAR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW L+TKEF L
Sbjct: 61  AATSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EA  LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 AKDRLLVTVFAEDDEAHGLWKKIAGFSDDRIIRIPTSDNFWTMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS+ E+G+R+IEIWNLVFMQ+EQ   Q R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 EHIWGGPPGSAEEDGDRFIEIWNLVFMQYEQTP-QARLPLPRPSIDTGMGLERIAAVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI AS   TG++ +G+   +HRVI DHLRSS FLIADG+LP+NEGRGY
Sbjct: 240 VHDNYDIDLFRALISASVNATGVEADGSARASHRVIADHLRSSCFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRR M +A LLG  EPLM  L+PAL  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 300 VLRRIMRRGMRHAHLLGAQEPLMWRLVPALIREMGRAYPELVRAEALITETLRLEEGRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD     L +   L+G+ AF+LYDT+G PLD+ QD L ARG  G+D   F 
Sbjct: 360 KTLERGLGLLDAATVDLSEGGELDGETAFRLYDTYGFPLDLTQDALRARG-IGVDTAGFA 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   T+ +WF LKEK GAT+F+GY+                  
Sbjct: 419 AAMERQKAEARAAWAGSGEAATDAVWFGLKEKCGATEFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V  G  V E  +GQ    VF+QTPFY E+GGQ+GDTG     G+
Sbjct: 461 -----AERAEGAVAALVADGREVSELATGQSGFAVFNQTPFYGESGGQVGDTGSLHALGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++TD QKKA+G+FVH   VE G L   ++L + +D   R  +  NHSATHLLH AL  
Sbjct: 516 KARVTDTQKKADGLFVHAVTVEEGTLSVGLALDMIVDPDRRTAIRSNHSATHLLHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD +H KP++  ELK +ED  N+I+ QN  V TR+M  ++A
Sbjct: 576 VLGGHVAQKGSLVSPERLRFDFSHPKPMSEDELKVVEDYANEIVLQNAAVETRLMAVDEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I SGA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ +V+E 
Sbjct: 636 IESGAMALFGEKYGDEVRVVSMGTALHGDKAGKAYSVELCGGTHVRRTGDIGLVRLVTEG 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG  AR++L  QD +++ LA  LKV   +V  RV ++ E+ R+L+   
Sbjct: 696 AVAAGVRRIEALTGPVARAYLDEQDARVRELAGLLKVGAADVTARVAQLVEDRRRLEREL 755

Query: 775 AKRKLQLNVEDLS-------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           A+ K +L +              +  +  M+ I+  ++ K+LK + D    ++ SG+++L
Sbjct: 756 AEAKKKLAMGGGGGEAGAAVVKMVGSLRLMARIVEGINPKDLKGLADETMAQVGSGVVVL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + ++++ KA+++  V++DL DR +AVDL RL ++ LGG GGGGRP MAQ+GGP+
Sbjct: 816 ISVAEDGKAAIVTAVSKDLTDRVSAVDLVRLGSEALGGRGGGGRPDMAQAGGPD 869


>gi|319944272|ref|ZP_08018548.1| alanine--tRNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319742567|gb|EFV94978.1| alanine--tRNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 882

 Score =  883 bits (2282), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/905 (39%), Positives = 532/905 (58%), Gaps = 54/905 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  +L+FF+  GH ++ SS ++P +DPTL+F N+GM  FK++F G +K  Y  
Sbjct: 1   MMKSAEIRQQYLKFFESKGHTIVASSPVVPHDDPTLLFANAGMNQFKDVFLGFDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ AW+LLT  F L
Sbjct: 61  ATTAQKCIRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFAWELLTTVFKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L +TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+
Sbjct: 121 PPEKLLVTVYAEDDEAYDIWAKQVGVPADRIVRIGDNKGARYASDNFWMMGDTGPCGPCT 180

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  + GG PGS  E+G+R+IEIWN+VFMQ+ +    E   LP+ S+DTGMGLER
Sbjct: 181 EIFYDHGPEVAGGPPGSPEEDGDRFIEIWNIVFMQYNRDESGELHPLPRPSVDTGMGLER 240

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           +A VLQ   +NY+IDLF +L+ A+ +V             + +VI DH+R+  F I DG+
Sbjct: 241 VAAVLQHVHSNYEIDLFVNLLAAAAKVVQDAGGTPETGSPSLKVIADHIRACCFTIVDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI+RRA+ +   +G  +P +  L+PAL  EMG AYPEL + +  IEE 
Sbjct: 301 VPGNEGRGYVLRRIIRRAVRHGYKMGARQPFLYSLVPALVKEMGEAYPELKRDQARIEEV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+ RF +T+  G+ LL+G L+ L   ++L+G+ AF+L+DT+G PLD+  D+   RG+
Sbjct: 361 LKGEESRFFETIANGMSLLEGALAGLKGKKVLDGETAFRLHDTYGFPLDLTADVCRERGV 420

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F  A+  QR +ARA     G+         L+     T+F+GYD L       
Sbjct: 421 T-VDEAGFETAMAHQREQARAAGRFKGASL-------LEYDGETTRFVGYDEL------- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+  +E  +G +  VV D +PFYAE+GGQ+GD
Sbjct: 466 ----------------SAQARVLALYHDGKPAQELKAGDEGVVVLDVSPFYAESGGQVGD 509

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G G+R  ++D QK    ++ HH  VE G L+   ++   ++   R++ + NHSAT
Sbjct: 510 QGHLQGQGLRFAVSDTQKIQAAVWGHHGRVEEGSLKVGDTVQAQVNTALRQKTTRNHSAT 569

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS + PD  RFD +H+KP+T  E++++E  VN  I  N   V
Sbjct: 570 HLLHKALRQVLGDHVAQKGSLVDPDHTRFDFSHNKPMTPEEIQAVEAIVNAEIRSNTATV 629

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            R M+ ++AIA+GA AL G KY D               +  LCGGTHV+ +GEI +  I
Sbjct: 630 IRQMSYDEAIAAGAMALFGEKYGDV------VRVVDVADTRELCGGTHVARSGEIGVFKI 683

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AGIRR++ +TG+ A + +  Q   L  +A+ ++     V  RV ++  + + L
Sbjct: 684 ASEGGVAAGIRRVDGLTGEGALAWIQQQLATLAEVAAAVRAPVAEVPARVAQLQTQVKDL 743

Query: 771 QLIHAKRKLQLNV---EDLSCHKIA---DVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
                + K        ++L+          + +   +  +D+K L++ +D L+ +++S +
Sbjct: 744 GRELDRVKASAASSQGQNLAAQATVLPCGAHLLVTRVDGMDAKALRATVDQLKDQLKSLV 803

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++L  +    K  ++  VT DL++   A ++    A  + GG GGG+P  A +GG +   
Sbjct: 804 VVLASVEGNDKIQLVAGVTPDLVNTVKAGEMLGRVAAQV-GGKGGGKPDFAMAGGNDVAA 862

Query: 885 ADQAI 889
            +  +
Sbjct: 863 LEGVL 867


>gi|209694226|ref|YP_002262154.1| alanyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|208008177|emb|CAQ78320.1| alanyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 860

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/910 (40%), Positives = 531/910 (58%), Gaps = 68/910 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+  +L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             RL +T+Y+ D+EAF++W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 ADRLLVTIYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRLADGTMEPLPKPSVDTGMGIERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ + +V  + Y+  +  + RV+ DH+RS S+LI DG++P+
Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKETAKV--VGYDDLSNQSLRVVADHIRSCSYLIVDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L +L    +L+G+  FKLYDT+G P D+  D+   R L  I
Sbjct: 361 EEENFGRTLERGMVILNEALDNLE-GTVLDGETVFKLYDTYGFPADLTNDVARERELT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+ EQR RAR        G     + ++ +    T F GYD            
Sbjct: 419 DEDGFEKAMNEQRQRAREA------GQFGTDYNAVIKVESETVFHGYDFTE--------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  I  +GE VE   +G    ++ D TPFYAE+GGQ GD G 
Sbjct: 464 --------------AKATVLEIFCEGEAVETLSAGDDAILILDVTPFYAESGGQSGDAGI 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  +  +TD QK       HH  +  G+L T    +  +D + R  +++NHSATHLL
Sbjct: 510 ITVEAGKFVVTDTQKVGN-AIGHHGKLVEGVLSTADRAMAQVDEERRTAITLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD ++ + +   EL+ +E  VN  +  N  + T +
Sbjct: 569 HAALRQVLGEHVTQKGSLVKAESLRFDFSNLEGVKPEELRLVERIVNQQVRLNHAIETDL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 629 MDVDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG+ A   +  Q +                  ++ +   + + L+  
Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIESQQKLAD--------------KKLHDASSKTKLLEKE 729

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K +L  +  S        I+ V  +   +   D+K L+ ++D L+ +I SG+IM+ 
Sbjct: 730 IQQLKDKLASQASSDLISQVQDISGVKVLITQLDGADNKALRGMVDELKNQIGSGVIMIG 789

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S + K  ++  VT+DL+ +  A +L  + A  + GG GGGRP MAQ+GG +      A
Sbjct: 790 NVS-DDKVGLIAGVTKDLIGQVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAKALPAA 847

Query: 889 IAGVASFLKK 898
           +A V ++L +
Sbjct: 848 LATVEAWLTE 857


>gi|153206762|ref|ZP_01945603.1| alanyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165918516|ref|ZP_02218602.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|212218396|ref|YP_002305183.1| alanyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
 gi|120577125|gb|EAX33749.1| alanyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165917762|gb|EDR36366.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|212012658|gb|ACJ20038.1| alanyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
          Length = 865

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/903 (40%), Positives = 544/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + +R TFL +F++  HE++P SSLIP NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT    L 
Sbjct: 61  VSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL++TV+ +D E+  +W K   ++ ++  R    DNFW M +TGPCGPC+EIF+D G 
Sbjct: 121 PQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGP 180

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS+E +G+RY+EIWNLVFMQ+ +  K     L K S+DTGMGLER+A V+Q  
Sbjct: 181 TISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLF++L++A   +   +    +  + RVIVDH+RS +FLIADG++P+NEGRGYV
Sbjct: 241 HDNYDIDLFQYLLKALRTLLKTED--LHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L   L  EMG AYP L +++ LIE+T++ E+ +F  
Sbjct: 299 LRRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEIQFSN 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL +LD  ++ L   +I  G++ F+LYDT+G P D+  DI   R    +D   F++
Sbjct: 359 TLTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDF-VMDYAGFDK 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR +++     + +      +       G TQF+GY+ L                 
Sbjct: 417 AMERQREQSQQAHQFVAN------YAQKASIGGETQFVGYETLNS--------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V +++Q  + +      +K  VV D+TPFYAE+GGQ+GD G    +   
Sbjct: 456 --------QANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+ + I++H   + +G L  +  +   +D      +  NHSATHLLH AL  +
Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDVSR-FDIMRNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +    LRFD +H+KP+T  EL+++E  VN  I  NL     +M  E+A 
Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G +Y   VRV+ +     G  S+ +CGGTH   TGEI L  IVSES   AGI
Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  ++   +++L+SL+  LK ++ N+  ++ +I E++RKL+   AK K +
Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740

Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  + L         + D+  ++  +  V+ + L++++D L++K+    I+L  I +E +
Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVERETLRAIVDQLKQKLGKAAIVLATI-EEGR 799

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT++ L+ FNA +L    A+ + GG  GGRP +AQ  G      + A+A V  +
Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV-GGRSGGRPDLAQGAGERPENLEAALAAVPKW 858

Query: 896 LKK 898
           ++K
Sbjct: 859 IEK 861


>gi|300113492|ref|YP_003760067.1| alanyl-tRNA synthetase [Nitrosococcus watsonii C-113]
 gi|299539429|gb|ADJ27746.1| alanyl-tRNA synthetase [Nitrosococcus watsonii C-113]
          Length = 874

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/906 (43%), Positives = 552/906 (60%), Gaps = 49/906 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +RT FL++F++ GHE++PSS L+P NDPTL+FTN+GMV FK +F G+E   Y  
Sbjct: 1   MKSSAELRTIFLDYFRRQGHEIVPSSPLVPANDPTLLFTNAGMVQFKEVFLGREARTYDR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+   L
Sbjct: 61  AASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYAWELLTEVLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TV+ ED+EA  +W +  G+S ++  R    DNFWSM ETGPCGPCSEIF+D G
Sbjct: 121 PPERLWVTVFKEDDEAANIWLRGIGVSPERFSRCGAEDNFWSMGETGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGSSE EG+RY EIWNLVFMQ+++  +     LP+ S+DTGMGLER+A V+Q 
Sbjct: 181 PEIAGGPPGSSEQEGDRYTEIWNLVFMQYDRDKEGRLSPLPRPSVDTGMGLERLAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLF+HLI A   + G++       + RVI DH+RS +FLI DG+ PANEGRGY
Sbjct: 241 VHNNYDIDLFRHLIAAITALPGVQ--NQEQTSLRVIADHIRSCAFLIVDGVQPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +  +LG  +P   HL   L  EMG AYPEL++ +  +E  L+ E+ERF 
Sbjct: 299 VLRRIIRRAIRHGHVLGLRDPFFYHLAQPLVQEMGEAYPELVRLQSQVERVLKLEEERFN 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL +L+  + HL  D ++ G+  F+LYDT G P+D+  DI   R L+ +D+  F 
Sbjct: 359 ETLEQGLKILEQDIIHLS-DGVIPGETIFRLYDTFGFPVDLTADIARERKLS-LDMKGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+  QR RARA S      + E++  +L      T+FIGY+ L                
Sbjct: 417 QAMARQRERARAASRFSEEYSAEELQINL-----ETEFIGYEQL---------------- 455

Query: 480 PPIDLTNGVSSIVKAIV---QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       V A+    +  E VE+  +G+   VV DQTPFYAEAGGQ+GD G   G
Sbjct: 456 -------CAKGQVVALFCLAETMEAVEQLNAGESGMVVLDQTPFYAEAGGQVGDRGTLHG 508

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                 +TD +K+     VH   V  G LR   S+   ++ Q R    +NHSATHLLH A
Sbjct: 509 SSGLFNVTDTRKQGA-AHVHLGEVRLGQLRIGDSIQSEVNRQYRTPTRLNHSATHLLHAA 567

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG  V+Q GS +  D LRFD +H + + S +L+ IE  +N  I  NLPV T++M  
Sbjct: 568 LREVLGESVAQKGSLVASDRLRFDFSHLEAVQSGQLRQIEHLINAKIRANLPVETQLMPL 627

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A+ +G  AL G KY ++VRV+ +     G  S  LCGGTHV  TG+I L  I++E  +
Sbjct: 628 QQALDAGVVALFGEKYGEQVRVLRM-----GDFSMELCGGTHVDRTGDIGLFKIINEMGV 682

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AGIRRIEA+TG+ A S +   +  L++L   LK S+ + V ++E++ ++ R+ +    +
Sbjct: 683 AAGIRRIEAVTGEAALSWVEESEVCLEALMGRLKASRDSAVDKLEQLQQQNRQQEKELQR 742

Query: 777 RKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L             ++  +  ++  I  VDSK L++ +D L+ K+    ++L G  
Sbjct: 743 LKAKLATAGGADLSAQAQEVRGIKVLAARIDGVDSKTLRATVDQLKGKLTIAAVVL-GTV 801

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT++  DR  A DL    A+ + GG GGGRP MAQ+GG + +  D A+  
Sbjct: 802 AEGKVVLIAGVTKNATDRIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGRHPDNLDAALGL 860

Query: 892 VASFLK 897
           V  +++
Sbjct: 861 VPKWVE 866


>gi|77464020|ref|YP_353524.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
 gi|123591443|sp|Q3J0R1|SYA_RHOS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|77388438|gb|ABA79623.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
          Length = 883

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/874 (49%), Positives = 570/874 (65%), Gaps = 37/874 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA ++WKK++GL  ++IIRI TNDNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKEKLLVTVYHTDDEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL + + LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  L HL +   L G+ AFKLYDT+G PLD+ QD L  +G   +D+  F 
Sbjct: 361 QTLERGLRLLEDELGHLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF L E +GAT+F+GYD                  
Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V  G     A +GQ V+++ +QTPFYAE+GGQ+GDTG    D  
Sbjct: 462 -----TEQAEGQVLALVAAGAETASAGAGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R +ITDV KK +G+F+H A V  G +R      L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRSAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +HS+ ++  EL ++E  VN  I  N  V TRIM+ +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHVS  G+I L  I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGTDGQTYSLELCGGTHVSRLGDIGLCVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TG+ A ++L  Q ++L  +A+ LK +   +V RV+ + EE R+LQ 
Sbjct: 696 DSASSAGVRRIEALTGEGALAYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755

Query: 773 IHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+ + +  +         +I  V F++ ++  V  K++  ++D ++ ++ SG ++L+ 
Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
                KA++   VT DL DR +AV L + +A+ L
Sbjct: 816 -DTGGKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848


>gi|308048574|ref|YP_003912140.1| alanyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
 gi|307630764|gb|ADN75066.1| alanyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
          Length = 876

 Score =  882 bits (2280), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/896 (41%), Positives = 526/896 (58%), Gaps = 57/896 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IRT FLE+F+  GHE++ SSSL+P NDPTL+FTN+GM  FK+ F G E+  Y   
Sbjct: 3   MTTAEIRTAFLEYFRSQGHEVVASSSLVPHNDPTLLFTNAGMNQFKDCFLGAEQRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIKFAWQFLTEVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + +L +TVY  D+EAF +W K  G++A+ IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KDKLCVTVYHTDDEAFDIWNKEIGIAAENIIRIGDKPGKPAYTSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG P    E+G+R+IEIWN+VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQFNRHADGTMDPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NYDID+F+ LI+ + ++TG      +  + RV+ DH+RS ++LI DG++P
Sbjct: 243 VAAIMQGGHSNYDIDIFQRLIKKAAEITGTTD--LDNKSLRVVADHIRSCAYLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ + R LG  +     L+  L   MG+A  EL Q + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGRKLGANDTFFFKLVGELADVMGAAGEELKQQQAIVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E F +TL+RG+ LL+  L +L   ++L+G   FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEEGFARTLERGMQLLNEALDNLD-GDVLDGATVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F   +E+QR RAR       +G     +  +      + F GYD           
Sbjct: 419 IDEDGFEVEMEQQRQRAR------DAGQFGTDYSKVVSIDSDSVFTGYDRTDD------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA--VSGQKVEVVFDQTPFYAEAGGQLGD 530
                              V AI+ +G  V+      G    +V DQ+PFYAE+GGQ+GD
Sbjct: 466 ----------------QGKVVAILVEGNEVDSLMGERGTDAVLVLDQSPFYAESGGQVGD 509

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG         ++TD QK       H   +  G  +   ++   +D   R  + +NHSAT
Sbjct: 510 TGVIRCGDAEFEVTDTQKLGN-AIAHKGKLVSGAFQRGDAVAAEVDASRRDAIRLNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS +  D LRFD +H + ++  EL +IE+ VN+ I  N  + 
Sbjct: 569 HLLHAALRNLLGDHVTQKGSLVMADRLRFDFSHFEGVSRDELVAIENQVNEQIRANHSID 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M+ E A A GA AL G KY+D+VRV+++     G +S  LCGG H   TG+I    I
Sbjct: 629 TELMDIEAAKARGAMALFGEKYDDQVRVLAM-----GDYSIELCGGIHAKRTGDIGFFKI 683

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE  I AGIRRIEA+TG  A +    Q+ +L   A+ +K    +V  +V+ + ++ R+L
Sbjct: 684 VSEGGIAAGIRRIEAVTGNGAVAFARSQENQLLETAALVKGDAQSVASKVKGLLDKNRQL 743

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L          S   +  V  +   +   DSK L+ ++D L+ ++ SGI+
Sbjct: 744 EKELEQLKQKLASAASANLVDSAVDMGGVKVLISQLENADSKALRGMVDDLKNQMGSGIV 803

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +L  ++ + K  ++  VT+DL  +  A +L  L A+ + GG GGGRP MA +GG +
Sbjct: 804 LLGNVA-DGKVGLIAGVTKDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAMAGGTD 857


>gi|319790646|ref|YP_004152279.1| alanyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317115148|gb|ADU97638.1| alanyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 878

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/907 (41%), Positives = 542/907 (59%), Gaps = 43/907 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR TFL+FF++ GH  + SS L+P NDPTL+FTN+GMV FK+ F G+E+P ++  T
Sbjct: 4   SADRIRETFLKFFEEKGHARVKSSPLVPKNDPTLLFTNAGMVQFKDYFLGKEEPPFKRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+RAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW+L+T+ F L +
Sbjct: 64  SCQKCMRAGGKHNDLENVGRTGRHHTFFEMLGNFSFGDYFKEEAIKFAWELVTEVFKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY++VY EDEEAF++W+ + G+  ++I R+   DNFW+M +TGPCGPCSEI++D+GE 
Sbjct: 124 ERLYVSVYKEDEEAFRIWRDVVGVPQERIYRLGEKDNFWAMGDTGPCGPCSEIYYDRGEE 183

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G      S + +RY+EIWNLVFMQFE+    +   L K SIDTGMGLER+A+VLQ  
Sbjct: 184 FACGPNCGIGSCDCDRYLEIWNLVFMQFERDESGKLRPLEKPSIDTGMGLERIASVLQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +NY+ DL   L++ + +++G+ Y  +     + RVI DHLR+ +FLI+DG+LPANEGRG
Sbjct: 244 PSNYETDLLFPLVKWASKLSGVPYGRSEKSDTSMRVIADHLRAMTFLISDGVLPANEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA  + RLLG   P +   +  +   MG AYPEL  ++ L+E  +R E+ERF
Sbjct: 304 YVLRRIIRRASRHGRLLGIKGPFLYSGVKEVVKIMGKAYPELELSRELVERVVRREEERF 363

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL+RGL +   ++  L    ++++ G   FKLYDT G P+D++ ++    GL  +D+ 
Sbjct: 364 SRTLERGLQIFQEIIDELKSRSEKVIPGSEVFKLYDTFGFPIDLVLEVANDEGLR-VDLE 422

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + L+EQR RAR    G            L  ++  T F GY+ L             
Sbjct: 423 GFEKLLKEQRERARKAWKGGAQKVVSPELQRLSLEH-PTLFTGYEHLEEY---------- 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V  I++  E+VE    G++  V+ D+TPFY E GGQ+GDTG   G
Sbjct: 472 -------------AKVVGILKGEELVESISEGEEATVILDRTPFYPEKGGQVGDTGTLEG 518

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                ++TD Q   E +  H   V RG L     +   +D + RR ++  H+ATHLLH A
Sbjct: 519 TDSLCKVTDTQNITEKLIGHKVKVLRGKLSVGDYVEARVDEERRRAITRAHTATHLLHKA 578

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS + PD LRFD TH +  T  EL+++E+ VN  I +N PV    M  
Sbjct: 579 LKEVLGNHVKQAGSLVLPDRLRFDFTHFEAPTKEELRAVEELVNRWITENYPVKIEEMPY 638

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+  GA AL G KY   V        D G  S  LCGGTHV  +G+I    + SESSI
Sbjct: 639 DEALERGAIALFGEKYGSVV-----RVVDVGGVSVELCGGTHVKRSGDIGFFKLTSESSI 693

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G RR+EA+ G  A   +  +++ ++ L   L+  +  +  +VE + EE ++ +    +
Sbjct: 694 SSGTRRVEAVVGPEALKWVWEKEKLIEELKGALQSPEEQLTAKVERLKEELKEKERELEQ 753

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L    L     +  +      ++  +  +  +EL  + DAL+ K +S  +MLVG+ 
Sbjct: 754 LKRKLASGKLDELLKNAKEANGFKVITAKVDGLAGRELVDLADALRNKAKSAAVMLVGV- 812

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           K  KA+++I +T+DL +RF A +L R  A +L  G GGGRP +AQ G  + ++  +A   
Sbjct: 813 KGGKANLVIALTKDLTNRFKAGELIREVAPIL-QGKGGGRPDLAQGGVKDLSRLQEAFDK 871

Query: 892 VASFLKK 898
             S L +
Sbjct: 872 FYSLLTE 878


>gi|134093868|ref|YP_001098943.1| alanyl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|205830068|sp|A4G2S9|SYA_HERAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|133737771|emb|CAL60816.1| alanyl-tRNA synthetase [Herminiimonas arsenicoxydans]
          Length = 869

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/910 (40%), Positives = 522/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF+  GH ++ SS L+P NDPTLMFTNSGMV FK++F G++K  Y   
Sbjct: 1   MKSSEIREKFLKFFESKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  +W+LLTK + L 
Sbjct: 61  TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALMWSWELLTKVYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSE 174
             +L  TVY ED+EA+ +W K  GL  +++IRI         +DNFW MA+TGPCGPCSE
Sbjct: 121 GDKLLATVYIEDQEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG P    E+G+RYIEIWN VFMQF+         LP   +DTGMGLER+
Sbjct: 181 IFYDHGPHIAGGPPGSPDEDGDRYIEIWNNVFMQFDMAEDGTVKPLPAPCVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+ID F  LI+A+ + T  K   NN  + +VI DH+R+++FL+ADG++P+
Sbjct: 241 AAILQGVHSNYEIDTFAALIKAAGRETNTKDLTNN--SLKVIADHIRATAFLVADGVIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV RRI+RRA+ +   LG  +P    L+  L  +MG AYP+L      I E L++
Sbjct: 299 NEGRGYVQRRIIRRAIRHGYKLGQKKPFFHKLVKDLVEQMGEAYPKLQADAQRITEVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +TL  G+ +LD  L+  G  ++L G+VAFKL+DT G PLD+  D+    G   +
Sbjct: 359 EEERFFETLANGMEILDAALA--GGVKVLPGEVAFKLHDTFGFPLDLSADVCREAG-VSV 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+E+Q++  RA           K+  +++       F GY+ L+         
Sbjct: 416 DEAGFAAAMEKQKAAGRAAGKF-------KMERAVEYTGAGNVFTGYENLQED------- 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  +  +G  V++   GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 462 ----------------ATVVGLYFEGTAVQQLKEGQAGIVVLDTTPFYAESGGQVGDQGF 505

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +G++  + D QK    ++ HH +  +G L+    +   +D   R     NHS TH++
Sbjct: 506 VSAEGVQFGVEDTQKIKADVYGHHGVQTQGTLKVGDKVQAAVDGARRAATMRNHSVTHIM 565

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +  +  RFD  H+ P+T  ++  IE  VN  I  N     R+
Sbjct: 566 HKALREVLGEHVQQKGSLVDAEKTRFDFAHNAPVTHEQILEIEKRVNAEILANSDTQARV 625

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A  +GA  L G KY + VRV+ +        S  LCGGTHVS TG+I L  +V E
Sbjct: 626 MDIESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVSRTGDIGLFKVVGE 679

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RRIEAITG  A S+    +  + S A+ LK     +  R+ ++ ++ + L+  
Sbjct: 680 SGVAAGVRRIEAITGANALSYFQDLEATVHSAAATLKSPPAELQPRLAQVLDQVKTLERE 739

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L             +I  +  ++  +   D+  L++ MD L+ K+++  I+L 
Sbjct: 740 INALKGKLASSQGDELLSQAVEIKGIKVLAAKLENADAGTLRTTMDTLKDKLKTAAIVLA 799

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K S++  VT D   +  A +L    A+ + GG GGGR  MAQ+GG + +    A
Sbjct: 800 AV-NDGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRADMAQAGGTDASGLPAA 857

Query: 889 IAGVASFLKK 898
           + GVA+++ +
Sbjct: 858 LQGVAAWVAE 867


>gi|297539363|ref|YP_003675132.1| alanyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297258710|gb|ADI30555.1| alanyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 901

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/927 (39%), Positives = 530/927 (57%), Gaps = 72/927 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 10  SSNEIRKAFLDFFASKGHQIVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRTYTRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F L +
Sbjct: 70  SSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKDDAIAYAWELLTEVFKLPK 129

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY +D+EA+ +W    G+ A++IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 130 DKLTVTVYADDDEAYNIWHDKIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTEI 189

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+   GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMGLER++
Sbjct: 190 FYDHGDHHFGGPPGSPDEDGDRFIEIWNNVFMQFNRDEAGMMHPLPKPSVDTGMGLERIS 249

Query: 235 TVLQEKTNNYDIDLFKHLIQASE------------------QVTGMKYEGNNIVNHRVIV 276
            VLQ    NY+ID+FK LI A+                   ++     E  N  + +V+ 
Sbjct: 250 AVLQHVHANYEIDIFKTLIDAAAREVFVTPSNQTYSVASLSELKSKYPEILNNPSLKVLA 309

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH+R+ SFLIADG++P NEGRGYVLRRI+RRA+ +   LG        L+P L  +MG A
Sbjct: 310 DHIRACSFLIADGVIPGNEGRGYVLRRIIRRAIRHGYKLGTRAAFFYKLVPDLVKQMGEA 369

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTH 394
           YPEL+  +  I + L+ E++RF +T++ G+ +L+  L+ +    + + NGD+AFKL+DT 
Sbjct: 370 YPELVANQSRIMDMLKLEEDRFFETIENGMEILETELATMSKANNTLFNGDLAFKLHDTF 429

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G PLD+  DI   R    +D  +F+ A+  Q+ +ARA           K+  +L+     
Sbjct: 430 GFPLDLTADICRERD-VNVDSAAFDAAMTRQKEQARAAGKF-------KMATNLEYNGAN 481

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           T F GY+ L                         S+ + A+ + G  V +   G++  VV
Sbjct: 482 TDFKGYETLE-----------------------ASAKILALYKDGTAVNQLSEGEQGVVV 518

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D TPFYAE+GGQ+GD G    +     + D QK    +F HH I++ G +    SL  +
Sbjct: 519 LDNTPFYAESGGQVGDNGVLKAENGIFAVEDTQKIQAAVFGHHGILKTGKISVGESLKAS 578

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   R  +  NHSATHL+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E+  
Sbjct: 579 VDIAARANIMRNHSATHLMHKALRQVLGTHVQQKGSLVDADKTRFDFLHNAPMTDEEIAK 638

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           +E  VN  I  N P   R M+ E A  +GA  L G KY D VRV+ +        ++ LC
Sbjct: 639 VEAIVNAEILANAPTQAREMDIESAQKTGAMMLFGEKYGDIVRVLDIGS------TTELC 692

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV+ TG+I L  + +ES + AG+RRIEA TG  A   +  Q   +  L++ LK    
Sbjct: 693 GGTHVNRTGDIGLFKVYAESGVAAGVRRIEAATGNGALKLINAQQALISQLSADLKAPTS 752

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKEL 809
            +  +V ++ +  + L+   A+ K +L             +IA V  ++  +   D+  L
Sbjct: 753 ELASKVAQLSDHAKSLEKELARLKSKLASSQGDDLATQATEIAGVKVLAVTLEGADANTL 812

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           +  MD L+ K++S  I+L  +  + K S+   VT DL  +  A +L    A+ +GG G G
Sbjct: 813 RETMDKLKDKLKSAAIVLASV-NDGKVSLAAGVTSDLTGKIKAGELVNFVAQQVGGKG-G 870

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G+P MA +GG + ++  +A+AGV+ ++
Sbjct: 871 GKPDMAMAGGTDASQLPKALAGVSDWV 897


>gi|212212531|ref|YP_002303467.1| alanyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|212010941|gb|ACJ18322.1| alanyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 865

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/903 (40%), Positives = 544/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + +R TFL +F++  HE++P SSLIP NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT    L 
Sbjct: 61  VSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL++TV+ +D E+  +W K   ++ ++  R    DNFW M +TGPCGPC+EIF+D G 
Sbjct: 121 PQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGS 180

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS+E +GERY+EIWNLVFMQ+ +  K     L K S+DTGMGLER+A V+Q  
Sbjct: 181 TISGGPPGSAEADGERYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLF++L++A   +   +    +  + RVIVDH+RS +FLIADG++P+NEGRGYV
Sbjct: 241 HDNYDIDLFQYLLKALRTLLKTED--LHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L   L  EMG AYP L +++ LIE+T++ E+ +F  
Sbjct: 299 LRRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEMQFSN 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL +LD  ++ L   +I  G++ F+LYDT+G P D+  DI   R    +D   F++
Sbjct: 359 TLTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDF-VMDYAGFDK 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR +++     + +      +       G TQF+GY+ L                 
Sbjct: 417 AMERQREQSQQAHQFVAN------YAQKASIGGETQFVGYETLNS--------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V +++Q  + +      +K  VV D+TPFYAE+GGQ+GD G    +   
Sbjct: 456 --------QANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+ + I++H   + +G L  +  +   +D      +  NHSATHLLH AL  +
Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDVSR-FDIMRNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +    LRFD +H+KP+T  EL+++E  VN  I  NL     +M  E+A 
Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G +Y   VRV+ +     G  S+ +CGGTH   TGEI L  IVSES   AGI
Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  ++   +++L+SL+  LK ++ N+  ++ +I E++RKL+   AK K +
Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740

Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  + L         + D+  ++  +  VD + L++++D L++K+    I+L  I +E +
Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT++ L+ FNA +L    A+ + GG  GGRP +AQ  G      + A+A V  +
Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV-GGRSGGRPDLAQGAGERPENLEAALAAVPKW 858

Query: 896 LKK 898
           ++K
Sbjct: 859 IEK 861


>gi|83590480|ref|YP_430489.1| alanyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|123524268|sp|Q2RHZ3|SYA_MOOTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83573394|gb|ABC19946.1| alanyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
          Length = 881

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/907 (40%), Positives = 532/907 (58%), Gaps = 43/907 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF   GH ++ SSSL+P NDPTL+FTN+GMV FK+++ G ++  +   
Sbjct: 1   MTGNELRERFLKFFASKGHTIVHSSSLVPANDPTLLFTNAGMVQFKDVYLGLDRRPFTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK  AI  AW+ LT+  +L 
Sbjct: 61  TTAQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKREAITYAWEFLTRVLELP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY ED+EA++LW++I+G+ A++I+R+   DNFW+M +TGPCGPCSEI +D+G 
Sbjct: 121 PERLWVTVYQEDDEAYQLWQEIAGIPAERIVRMGEKDNFWAMGDTGPCGPCSEIIYDRGP 180

Query: 182 CIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                       + + +R++EIWNLVFMQ+E+ +      LP+ SIDTGMGLER+A+VLQ
Sbjct: 181 EHACSSTPCALGACDCDRWLEIWNLVFMQYERDSNGNLSPLPRPSIDTGMGLERVASVLQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGR 297
              +N+D DL   LI+A E++TG  Y+        RVI DH RS +FLIADGILP NEGR
Sbjct: 241 GVDSNFDTDLIAPLIKAVEKITGRTYDPGEAGFPFRVIADHARSCTFLIADGILPGNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
            YVLRRI+RRA  + + LG  EP +  L+  +   MG AYPE+ + +  I   +  E+ R
Sbjct: 301 SYVLRRILRRAARFGKALGIDEPFLYRLVDTVVAIMGGAYPEVAEQQEHIARVIEQEEIR 360

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL+ GL +L+G+L    +   E+++G  AF LYDT+G PLD+ ++I    G   +D 
Sbjct: 361 FHETLNDGLKVLNGILERARQEGREVVSGLEAFTLYDTYGFPLDLTEEIAGEGGFK-VDR 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A+  QR RARA    + +      +    E    T F GYD L            
Sbjct: 420 DGFEKAMAAQRERARAAREDVKAYDFALAFAGALEDISGTAFTGYDQLED---------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V A+ Q+G  V    +     VV D+TP Y E GGQ+GD G   
Sbjct: 470 -------------KGTVLALFQEGARVTSLEANATGYVVLDRTPCYPEGGGQVGDRGELK 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G + ++ D ++  +G  VH   V  G L     + + +D + R+  + NH+ THLLH 
Sbjct: 517 WSGGQARVEDTRRLPDGKIVHQINVTAGTLVVGQEVEIAVDRERRQATARNHTVTHLLHR 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV+Q GS +TP+ LRFD TH  P+T  EL+++E  VN  I  NLPV T   +
Sbjct: 577 ALKNILGEHVNQAGSLVTPERLRFDFTHFAPLTGEELRAVEAEVNQKILANLPVTTLETS 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY +RVRVV +       +S  LCGGTH+ ST E     +VSES 
Sbjct: 637 YQEAKAMGATALFGEKYGERVRVVKI-----DAYSMELCGGTHLGSTSEAGSFRLVSESG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RR+EA+TG  A    +   ++L ++A  LKV     + RV  + E+ ++ +   A
Sbjct: 692 IGAGVRRVEAVTGAAALEMALQDRQELATIAGLLKVPPDQAIQRVRHLLEQNKENERELA 751

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + + +L    +        ++A V  +   +   D + L+ + + L+ ++ SG+++L G 
Sbjct: 752 QLRNELASYTIDKLLDRVQEVAGVPVLPARVQITDPEALREMAERLRSRLGSGVVIL-GS 810

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               + + + +V++DL+ R  +A +L R  A+ +  GGGGGR  MAQ+GG +  K DQA+
Sbjct: 811 QHNGRVNFVAMVSKDLVQRGIHAGNLLREVAR-IASGGGGGRADMAQAGGKDPGKLDQAL 869

Query: 890 AGVASFL 896
           A     +
Sbjct: 870 AYSLKVV 876


>gi|285017964|ref|YP_003375675.1| alanyl-tRNA synthetase (alanine--tRNA ligase) protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473182|emb|CBA15688.1| probable alanyl-trna synthetase (alanine--trna ligase) protein
           [Xanthomonas albilineans]
          Length = 883

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/909 (42%), Positives = 544/909 (59%), Gaps = 49/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FLEFF+  GH ++PS+ LIP NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLEFFKGKGHAIVPSAPLIPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ LW+ + G+  ++I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDDEAYGLWRDMVGVPEERIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGAHIAGGPPGSPEEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI+ + ++T          + RVI DH+R+ +FLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTATTD--LENKSLRVIADHIRACAFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +     L+P L   MG AYPEL+ A+ ++   L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQGFFSKLVPTLVALMGEAYPELVAAQDIVLRALQAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V +      ++ G+ AF+LYDT+G PLD+ QDI   R L  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAAKAQ-GGVIAGEDAFRLYDTYGFPLDLTQDIARERALC-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+EEQR RAR        G   ++   L      T F+GYD L+          
Sbjct: 424 EQGFETAMEEQRRRAREAGKF---GGGVQLPADLVATLAPTLFLGYDSLQADGL------ 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++ G  V+ A +G  V ++ D+TPFYAE+GGQ+GD G  
Sbjct: 475 ----------------RVVALLKDGRPVQSAQAGDAVIILTDKTPFYAESGGQVGDIGIL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  G R  +TD QK A     H   +  G L+    L   +D + RR   +NHSATHLLH
Sbjct: 519 LQGGTRCAVTDTQKFAGQFHGHVGTLIEGTLKIGDVLAGQVDAERRRATILNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PI + EL  IE  VN  +  N  V    M
Sbjct: 579 AALREVLGTHVHQKGSLVAPDRLRFDFSHFQPIAAKELALIERKVNQQVRANHAVEVHQM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRV+ +     G +S+ LCGGTHV+ TG+I L  + SE 
Sbjct: 639 GMQEALDFGAMALFGEKYGERVRVLKM-----GDYSTELCGGTHVTRTGDIGLFKVTSEG 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  ++  ++  L   A  +  S  ++V ++ ++ ++Y++L+   
Sbjct: 694 GVSAGVRRIEAVTGQGALDYVSAEEAMLHEAAELVGGSANDMVDKIRQLGDKYKRLEREM 753

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +  V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 754 EALKAKLASSATADLAGSAVDVGGVKVLAVRLEGFDAKALREAMDRLKQQLGESVIVLAG 813

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S E K +++  V    + R  A +L    A  +  G GGGRP +AQ GG +G     A+
Sbjct: 814 AS-EGKVALVSGVNGSPMGRVKAGELLSHIASQIS-GKGGGRPDLAQGGGEDGPALVHAL 871

Query: 890 AGVASFLKK 898
           AGV  ++K+
Sbjct: 872 AGVTEWVKQ 880


>gi|260557541|ref|ZP_05829756.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|260409167|gb|EEX02470.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 883

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/913 (42%), Positives = 528/913 (57%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 6   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 66  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 125

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 126 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 186 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 303

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL
Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L  D+ + G   FKLYDT+G P D+  DI   RG  
Sbjct: 364 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 422

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + ++ +  G TQF GY    G      
Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 469

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 470 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D +K     FVH  IV  G L+T  ++   +    R   + NHSATH
Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N  V T
Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 632 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    L
Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSAL 751

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     +        IA    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 752 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S++  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 812 VLAGVEGD-KVSLIASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869

Query: 886 DQAIAGVASFLKK 898
            Q +A + ++L++
Sbjct: 870 GQVMAALPAWLEQ 882


>gi|294860514|ref|ZP_06798283.1| alanyl-tRNA synthetase [Acinetobacter sp. 6013150]
          Length = 883

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/913 (43%), Positives = 529/913 (57%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 6   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 66  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 125

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 126 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 186 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 303

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL
Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L  D+ + G   FKLYDT+G P D+  DI   RG  
Sbjct: 364 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 422

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + ++ +  G TQF GY    G      
Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 469

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 470 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D +K     FVH  IV  G L+T  ++   +    R   + NHSATH
Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I +N  V T
Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAKIIENTAVTT 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 632 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    L
Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSAL 751

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     +        IA    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 752 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 812 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869

Query: 886 DQAIAGVASFLKK 898
            Q +A + ++L++
Sbjct: 870 GQVMAALPAWLEQ 882


>gi|184157474|ref|YP_001845813.1| alanyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|213156272|ref|YP_002318692.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|215484078|ref|YP_002326303.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|294840176|ref|ZP_06784859.1| alanyl-tRNA synthetase [Acinetobacter sp. 6013113]
 gi|294842075|ref|ZP_06786758.1| alanyl-tRNA synthetase [Acinetobacter sp. 6014059]
 gi|301346311|ref|ZP_07227052.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301510214|ref|ZP_07235451.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|301596473|ref|ZP_07241481.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB059]
 gi|183209068|gb|ACC56466.1| Alanyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|213055432|gb|ACJ40334.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|213985935|gb|ACJ56234.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|322507789|gb|ADX03243.1| alaS [Acinetobacter baumannii 1656-2]
 gi|323517389|gb|ADX91770.1| alanyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
          Length = 883

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/913 (43%), Positives = 528/913 (57%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 6   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 66  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 125

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 126 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 186 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 303

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL
Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L  D+ + G   FKLYDT+G P D+  DI   RG  
Sbjct: 364 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 422

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + ++ +  G TQF GY    G      
Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 469

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 470 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D +K     FVH  IV  G L+T  ++   +    R   + NHSATH
Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N  V T
Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 632 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    L
Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSAL 751

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     +        IA    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 752 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 812 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869

Query: 886 DQAIAGVASFLKK 898
            Q +A + ++L++
Sbjct: 870 GQVMAALPAWLEQ 882


>gi|330720929|gb|EGG99105.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC2047]
          Length = 865

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/903 (44%), Positives = 550/903 (60%), Gaps = 46/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+F  + GHE L SSSL+P NDPTL+FTN+GMV FK +F G E   Y   
Sbjct: 1   MKSSDIRNAFLDFLVQQGHERLASSSLVPGNDPTLLFTNAGMVQFKELFLGNETRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+   L 
Sbjct: 61  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKVEAIKFAWTFLTEVMGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L++TVY+ED+EA  +W K  G+SA++  R+   DNFWSM +TGPCGPC+EIF+D GE
Sbjct: 121 EEKLWVTVYEEDDEAADIWLKDMGVSAERFSRLGKKDNFWSMGDTGPCGPCTEIFYDHGE 180

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG P    E+G+RYIEIWNLVFMQFE+        LPK S+DTGMGLER+A V+Q  
Sbjct: 181 EVAGGPPGSPDEDGDRYIEIWNLVFMQFERAADGTMTPLPKPSVDTGMGLERIAAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            NNY+IDLF+ L++ + +V G+     +  + RVI DH+RS SFL++DG++P+N+GRGYV
Sbjct: 241 HNNYEIDLFQTLLKRAAEVVGVSD--TSNTSLRVIADHIRSCSFLVSDGVIPSNDGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +     ++ AL  EMG AYPEL+  +  IE+ L  E+E+F K
Sbjct: 299 LRRIIRRAIRHGHKLGMKDAFFHKIVSALVDEMGEAYPELVTRQAQIEQVLAKEEEQFAK 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD+G+ + +  LS L  +EI  G+  F+LYDT+G P+D+  DI   R L  +DI  F Q
Sbjct: 359 TLDQGMQIFERDLSELKGNEI-PGETIFRLYDTYGFPVDLTADIARERNLI-MDIAGFEQ 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A++EQR RARA S        + ++       G T F GYDLL                 
Sbjct: 417 AMQEQRERARAASSFDVDMRADVVF------EGETDFCGYDLL----------------- 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      + A+V++G+  E  + G    VV D TPFYAE+GGQ+GD G    D   
Sbjct: 454 ------TEQCQISALVKEGDTAESLIEGDTGVVVLDHTPFYAESGGQVGDVGTLQTDEAV 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++T+  K+A    +H  +VERG       LV  +D + R+  ++NHSA+HLLH AL  +
Sbjct: 508 FRVTNTVKQAGT-HLHQGVVERGSFTVGTKLVAEVDTRKRQATALNHSASHLLHAALRDV 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS ++P+ LRFD +H + +T+ +L +IE  VND I  N  V T +M  EDA+
Sbjct: 567 LGEHVAQKGSLVSPERLRFDFSHFEAVTAQQLSAIEAMVNDKIQANSEVGTELMALEDAM 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SG  AL G KY+D VRV+S+        S  LCGGTHV+ TG+I +  I+SES + AG+
Sbjct: 627 NSGVTALFGEKYSDEVRVLSM----ADGFSVELCGGTHVNRTGDIAVFKIISESGVAAGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A ++    ++ L  +A  LK +    V +V+ +  + R+L+   A  K +
Sbjct: 683 RRIEAVTGNAALTYYQNLEQDLTEIAGVLKSAPEQTVEKVQLLASKNRQLEKELAALKAK 742

Query: 781 LNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L             ++  V  ++H    VD K L S MD L+ K+ + +I+L   +K  K
Sbjct: 743 LVTSSGRDLASEAVELNGVKVLAHAFEGVDGKTLLSTMDQLKSKLGTAVIVLA-TAKGDK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+D  DR  A +L  + A  +GG G GGRP MAQ+GG        A+A V  +
Sbjct: 802 VSLVAGVTKDATDRVKAGELVNMVAGQVGGKG-GGRPDMAQAGGNQPEAIPAALASVVPW 860

Query: 896 LKK 898
           L++
Sbjct: 861 LEQ 863


>gi|169796616|ref|YP_001714409.1| alanyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|205829964|sp|B0VAI3|SYA_ACIBY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830054|sp|A3M3W2|SYA_ACIBT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830056|sp|B2HWK7|SYA_ACIBC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169149543|emb|CAM87432.1| alanyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|193076886|gb|ABO11606.2| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 878

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/913 (43%), Positives = 528/913 (57%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 61  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 241 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L  D+ + G   FKLYDT+G P D+  DI   RG  
Sbjct: 359 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + ++ +  G TQF GY    G      
Sbjct: 418 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D +K     FVH  IV  G L+T  ++   +    R   + NHSATH
Sbjct: 508 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N  V T
Sbjct: 567 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 627 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    L
Sbjct: 687 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSAL 746

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     +        IA    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 747 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 807 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864

Query: 886 DQAIAGVASFLKK 898
            Q +A + ++L++
Sbjct: 865 GQVMAALPAWLEQ 877


>gi|54294686|ref|YP_127101.1| alanyl-tRNA synthetase [Legionella pneumophila str. Lens]
 gi|59798486|sp|Q5WVQ2|SYA_LEGPL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|53754518|emb|CAH16002.1| alanyl-tRNA synthetase [Legionella pneumophila str. Lens]
          Length = 860

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/904 (41%), Positives = 541/904 (59%), Gaps = 52/904 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL +F + GH+L+ SSSLIP NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MKSSEIRQAFLNYFVQRGHQLVASSSLIPSNDPTLLFTNAGMVQFKDLFLGLETRPYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   + 
Sbjct: 61  VTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY ED EA  +W K   +S ++  R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 AERLWVTVYKEDLEAEGIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGP 180

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG P    E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A V+Q  
Sbjct: 181 EVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDREGCLHPLPKPSVDTGMGLERLAAVIQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID F++LI+A  Q+        N  + +VI DH+RS SFLI DG+LP+NEGRGYV
Sbjct: 241 HSNYEIDSFQYLIKAIAQLGQ--DIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG   P    L+  L   MG AYPELI +K  IE  L+ E+ +F +
Sbjct: 299 LRRIIRRAVRHGNKLGLPSPFFFKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFTR 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++GL LL   + +L   E L+G+VAFKLYDT+G P+D+  DI+  +GL  ID+ +FNQ
Sbjct: 359 TLEQGLRLLQDHIKNLKGQE-LSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFNQ 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +++QR +++A S           + ++ +    ++F GY+                   
Sbjct: 417 LMQQQREQSQAASQFT------TDYHAVSQLDHQSEFHGYE------------------- 451

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                  + + +  ++Q+G  V+    G K  V+ D TPFYAE+GGQ+GD G  IG    
Sbjct: 452 ----KESMEAKIIGLLQEGNEVKSLNKGAKGAVILDHTPFYAESGGQVGDKGLLIGKEFS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            Q+ D QK  + +  +   V +G L  ++S+   +D+  R  + +NH+ATHLLH AL  I
Sbjct: 508 FQVDDTQKVGQAVVHY-GEVIKGELTLDLSIHAQVDHIRRDAIRLNHTATHLLHAALKQI 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           +G HV Q GS +  +  RFD +H +P+T  +++ IE+ VN  I  N  V+T++M+ E A 
Sbjct: 567 VGQHVQQRGSLVDAERARFDFSHFEPLTPQQIQQIEEVVNAQIRANNEVITQVMDIESAK 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA AL G KY+D VRV+S+     G  S  LCGGTH   TG+I L  IV+E  I +GI
Sbjct: 627 QSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASGI 681

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--- 777
           RR+E +TG+ A + +  Q   + +LA+ LK +  ++  +V ++  + +  + + AK    
Sbjct: 682 RRVEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKVSQLLLDNKNQEKMIAKLLSE 741

Query: 778 KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           K Q +  D+     +I  +N +   +  +DS+ ++  MD L+ +I S +I+L  I +  K
Sbjct: 742 KAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTIEQN-K 800

Query: 836 ASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +V+  V+++++ +  NA  L R        G GGGR  MAQ GG      +  I  +  
Sbjct: 801 MNVIAGVSKNIIGKTPNAAQLVRHLC-----GKGGGRDDMAQGGGDVPEDLNSKIKEIKE 855

Query: 895 FLKK 898
            ++K
Sbjct: 856 MIEK 859


>gi|83647875|ref|YP_436310.1| alanyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|123531367|sp|Q2SBT9|SYA_HAHCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83635918|gb|ABC31885.1| alanyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 876

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/911 (41%), Positives = 529/911 (58%), Gaps = 54/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ FL++FQ+NGHE++ SSSL+P +DPTL+FTN+GM  FK++F G++K  Y   
Sbjct: 1   MKSSEIRSAFLKYFQRNGHEVVASSSLVPADDPTLLFTNAGMNQFKDVFLGKDKRNYDRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT     +
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINYAWEFLTSSDWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           +D+ +L +TVY  D+E+F +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 121 IDKSKLTVTVYASDDESFDIWANEIGVPEERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG P    E+G+R+IEIWN+VFMQF +    E   LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGPHIAGGPPGSPDEDGDRFIEIWNVVFMQFNRTADGEMHPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+IDLF+ L+  + +V G           RVI DH+RSSSFLIADG+L
Sbjct: 241 RISALMQGVHSNYEIDLFQELLAEASKVLGGA--SIEEPALRVIADHIRSSSFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N GRG VLRRI+RRA  Y   +G TEP +  L+  L   MG AYPEL  ++  IE+TL
Sbjct: 299 PENIGRGSVLRRIIRRAARYGNKVGATEPFLHKLVGKLVELMGDAYPELKASQNKIEKTL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTLD+GL LL+  L  L     + G   F LYDT+G P+++  DI   R L 
Sbjct: 359 LLEEEQFAKTLDKGLKLLEHELEQLK-GMTIPGKTIFTLYDTYGFPVELTNDIARERSL- 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D+  +   +E QR RAR        G+    + +      +++F GY  L GS     
Sbjct: 417 AMDMDGYEVEMEAQRKRAREA------GSFGVDYNAGLNIDVSSEFTGYTELAGSYKA-- 468

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                                 A+    +  +    GQ+  VV D+TPFYAE+GGQ+GDT
Sbjct: 469 ---------------------LALFAGSDKADALTVGQQGLVVLDKTPFYAESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D +K+     VH   V  G ++   ++   +D   R+  ++NHSATH
Sbjct: 508 GVLKTDTGVFVVKDTKKEGA-AIVHIGAVSEGEIKVGQTVTAEVDRHKRKATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + P+ LRFD  H +P+T  +++ +E  VN  I  N  V T
Sbjct: 567 LLHAALRKVLGDHVAQKGSLVDPERLRFDFAHFEPMTQEQIRQVESIVNAQIRANTSVST 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY D VRV+++   D    S  LCGGTHV  TG+I +  I 
Sbjct: 627 EVMGMDAARERGAMALFGEKYGDTVRVLAMGESD---FSIELCGGTHVERTGDIGMFVIA 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+   AG+RRIEA+TGQ A + +   D  L+ +A  +K ++     +V  + E  R+L+
Sbjct: 684 SEAGTAAGVRRIEALTGQPAENWVQSSDALLRDIAVLVKGNRETAADKVRALIERSRQLE 743

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +L          S   +  +  ++  +  VD K L   +D L+ K+   +++
Sbjct: 744 KEVDQVKAKLASSAGSDLAASAVDVKGLKVLAAKLDGVDRKALMDTVDQLKNKLGQAVVL 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + ++ KAS++  VT+    +  A DL ++ A+ L GG GGGRP MAQ GG    K D
Sbjct: 804 LASV-EDGKASIVAGVTKAESAKVKAGDLVKMVAEQL-GGKGGGRPDMAQGGGVELGKLD 861

Query: 887 QAIAGVASFLK 897
            A+A V ++++
Sbjct: 862 AALASVNAWVE 872


>gi|221639882|ref|YP_002526144.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
 gi|221160663|gb|ACM01643.1| Alanyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
          Length = 883

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/874 (49%), Positives = 568/874 (64%), Gaps = 37/874 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA ++WKK++GL  ++IIRI TNDNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKEKLLVTVYHTDDEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL + + LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGTQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  L HL     L G+ AFKLYDT+G PLD+ QD L  +G   +D+  F 
Sbjct: 361 QTLERGLRLLEDELGHLPDGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF L E +GAT+F+GYD                  
Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V  G     A  GQ V+++ +QTPFYAE+GGQ+GDTG    D  
Sbjct: 462 -----TEQAEGQVLALVAAGAETASAGVGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R +ITDV KK +G+F+H A V  G +R      L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRAAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +HS+ ++  EL ++E  VN  I  N  V TRIM+ +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHVS  G+I L  I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGADGQTYSLELCGGTHVSRLGDIGLCVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TG+ A ++L  Q ++L  +A+ LK +   +V RV+ + EE R+LQ 
Sbjct: 696 DSASSAGVRRIEALTGEGALAYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755

Query: 773 IHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+ + +  +         +I  V F++ ++  V  K++  ++D ++ ++ SG ++L+ 
Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
                KA++   VT DL DR +AV L + +A+ L
Sbjct: 816 -DTGGKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848


>gi|116623844|ref|YP_826000.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|122253309|sp|Q01XA0|SYA_SOLUE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116227006|gb|ABJ85715.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
          Length = 878

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/908 (39%), Positives = 517/908 (56%), Gaps = 45/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF + GH ++ SSSL+P NDPTL+FTN+GM  FK++F GQEK  Y   
Sbjct: 1   MTGHEIRQRFLDFFAERGHRVVRSSSLVPANDPTLLFTNAGMNQFKDVFLGQEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AWDL+TK++ L 
Sbjct: 61  ASSQKCVRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKADAIAYAWDLITKDYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + +LY+TV+ ED+EA +LW+K++G+   +I R+   DNFW M ETGPCGPCSEI +D G 
Sbjct: 121 KEKLYVTVFREDDEAEELWQKVTGIPKSRIFRLDEKDNFWQMGETGPCGPCSEIHYDLGI 180

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
              E          + G R++EIWNLVFMQ+++    +   LP+ SIDTGMGLER+A +L
Sbjct: 181 EAAEPGREHEQFPDDAGGRFVEIWNLVFMQYDRDQSGKLNPLPRPSIDTGMGLERIAAIL 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K  NYD DL   +I+ + ++ G+    +       R++ DH R++ FLI DG++P+NE
Sbjct: 241 QGKITNYDTDLIYPIIEHAAEIFGVTPGADTRTDTVLRIVADHARATEFLIHDGVVPSNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLR+IMRRA+   R++G  +P +  L   +   M   YPEL+++   +    + E+
Sbjct: 301 GRGYVLRKIMRRALRNVRMIGIEDPFLYKLTGFVGELMKGPYPELLESIQRVARVTKDEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            R+  T      + +  +  +     + G ++FKLYDT+GL LD  +D+    GL  ID 
Sbjct: 361 HRYATTFLVAERVFNDAIKSIQ-GNTIPGALSFKLYDTYGLALDEQEDMAREHGL-AIDR 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            SF+  +E+QR RARA   G         +  L E+ G T+F+GY  L            
Sbjct: 419 ESFDTEMEQQRERARASWKGAEKAAVTPAYQKLVEQ-GRTKFLGYSELE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        +S V  ++   E V++  +G K E+V DQTPFYAE+GGQ+GD G   
Sbjct: 467 ------------AASRVVGLIVDKESVQQVPAGAKAELVLDQTPFYAESGGQVGDHGILY 514

Query: 536 GDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 +   +           H I     +    +L   +    R     NH+ATHLLH
Sbjct: 515 SAAGEKVADVETAFPGVPGLTVHRIAALAPIAVGDTLRAEVAVPLRDATRRNHTATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            +L T+LG HV Q GS + P  LRFD TH   +  AEL+ +E  +N  I +N  V T I+
Sbjct: 575 ASLRTVLGKHVKQAGSIVDPGRLRFDFTHYAGLDHAELEEVERLMNQEILRNTAVQTDIL 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E AIA+GA AL G KY D+VRVVSV        S  LCGGTHV  TG+I +  IV E 
Sbjct: 635 PLEQAIATGAMALFGEKYGDQVRVVSVPG-----FSRELCGGTHVQRTGDIGVAKIVYEG 689

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           SI AG+RRIEAITG+ A          +K +A  +KVS+  ++  +E++    R L+   
Sbjct: 690 SISAGVRRIEAITGEAALRQYQETSGAVKRVADMVKVSEPALIEHIEKMIANERALEKQV 749

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + K +L        D     I  V  ++  +  +D  +++++ D+L+ K +S +++L  
Sbjct: 750 EQLKNKLAQAAVGSLDAEARTIKGVKVVAAHLDGMDRAQMRALADSLRNKWKSAVVVLAS 809

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + ++   +++  VT+DL  + +A  LA   A+ + GG GGGRP MA++GG + +  D+A+
Sbjct: 810 V-EDGNVAIISAVTKDLTAKVHAGKLASSLAQAV-GGKGGGRPDMAEAGGKDPSCLDEAL 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 TAVYADVE 875


>gi|205830103|sp|Q0BSD5|SYA_GRABC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 880

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/887 (49%), Positives = 586/887 (66%), Gaps = 32/887 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+  + IR TFL +F +NGHE++ SS L+P NDPTL+F NSGMV FKN+FTGQE+  Y  
Sbjct: 1   MATSNDIRATFLNYFARNGHEVVDSSPLVPRNDPTLLFVNSGMVQFKNVFTGQERRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+++T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWNVVTREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              +L +TVY +D++A +LWK I+GL  ++IIRI ++DNFW M +TGPCGPCSEIF+D  
Sbjct: 121 PAEKLLVTVYQDDDDAARLWKSIAGLPEERIIRIASSDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+E+     R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYEEGPPGTRVNLPRPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS + TG   +G +  +HRV+ DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 241 KHDNYDTDTLRALIVASAEATGQDPDGPHKTSHRVVADHLRSTSFLMADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G TEPL+  L+PAL  +MG+AY EL+QA+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLMGMTEPLLYRLVPALVRQMGAAYGELVQAQSLITETLRLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL +L   +  LG+ + L+GDVAFKLYDT+G PLD+ QD L  +G   +D+  F+
Sbjct: 361 AMLDRGLAMLSDEVGKLGEGQTLSGDVAFKLYDTYGFPLDLTQDALREQGR-AVDVAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR RARA   G G    E +WF ++++ G T+F+GY                   
Sbjct: 420 AAMTEQRRRARAAWSGSGDAAQEGVWFEIRDRVGGTEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + + A+V  G + E A +G +V VV +QTPFY E+GGQ+GDTG   G   
Sbjct: 461 ----STEKAEAEIIALVANGALTETAPAGTEVAVVLNQTPFYGESGGQVGDTGIITGPNG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R+ I+D QKK   +FVH   VE G+ +    + + +D+Q R  +  +HSATHLLH AL 
Sbjct: 517 LRIIISDTQKKLGDVFVHLGRVESGLAQIGQPVEVVVDHQRRSAIRAHHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS   PD LRFDV+   PIT  +L  +E  VN +I QN PV TR+M  E 
Sbjct: 577 RRLGTHVAQKGSLNAPDRLRFDVSQPTPITRDDLAVVEAEVNALIRQNSPVNTRLMTPEQ 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESS 715
           A+A GA AL G KY D VRVVS+          +S  LCGGTHV  TG+I L  I  ES+
Sbjct: 637 AVAEGAMALFGEKYGDEVRVVSMGAPVEEGKPAYSIELCGGTHVGRTGDIGLFRITGESA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH- 774
           + AG+RRIEA+TG+ A + +   + +L+  AS L+V+ G+V  RV  + EE +KL+    
Sbjct: 697 VSAGVRRIEAVTGEAALAQIAEAERRLQETASLLRVAPGDVTTRVASLLEERKKLEAQLA 756

Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            A+RKL          ++  V   +  + +V  KELK + +A+ ++++SG++ LV  + E
Sbjct: 757 DAQRKLATGGAADKVEEVGGVKLAARNLGDVAPKELKGLAEAIARQLESGVVALVSTA-E 815

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            KASV++ VT DL  RF+AV L R ++  +GG GGGGRP MAQ+GGP
Sbjct: 816 GKASVVVGVTADLTSRFDAVTLVRAASAAVGGKGGGGRPDMAQAGGP 862


>gi|126667522|ref|ZP_01738492.1| alanyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126627948|gb|EAZ98575.1| alanyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 876

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 542/912 (59%), Gaps = 54/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FLE+F + GH ++PSSSL+P +DPTL+FTN+GM  FK++F G+E+  Y   
Sbjct: 1   MKTAELRQAFLEYFNQQGHAIVPSSSLVPADDPTLLFTNAGMNQFKDLFLGREQRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWNFLTSEQWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L+ITVY ED+EAF +W +  G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPKTKLWITVYAEDDEAFDIWNQEIGVPAERIVRIGDNAGGRYSSDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  + GG P    E+G+RYIEIWN+VFMQ+ +    E   LPK S+DTGMGLE
Sbjct: 181 SEIFFDHGPDVAGGPPGSPDEDGDRYIEIWNVVFMQYNRTADGEMLNLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF+ L++A+  V G         + RV+ DH+RS  FLI DG++
Sbjct: 241 RVTAVLQGVHSNYEIDLFQDLLKAASDVLGG--VATTEASLRVVADHIRSCCFLIGDGVM 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRG+VLRRI+RRA  +   LG   P    L+ AL   MG A+P+L+ +   IE+ L
Sbjct: 299 PSNEGRGFVLRRIIRRAARHGNKLGANGPFFYKLVGALVELMGEAFPQLVSSHKQIEKVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTLD GL LL+  ++ L   +++ G+  F LYDT+G P+D+  DI   RGL 
Sbjct: 359 LQEEEQFVKTLDNGLRLLEQDIAELK-GDVIPGETVFALYDTYGFPVDLTNDIARERGLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   + +A+E QR RARA S        E +        G T+F GY  + G + ++ 
Sbjct: 418 -LDYQGYEKAMEAQRERARAASKFGIDYNAESLKLE-----GVTEFSGYQNIDGHERIRS 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                                      G   + A +G +  +V ++TPFYAE+GGQ+GDT
Sbjct: 472 VIV------------------------GSEHKNAEAGDEAIIVLERTPFYAESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G R Q+TD +K+     +H   V  G L   + +   ID++ R +   NHSATH
Sbjct: 508 GLLTWSGGRFQVTDTRKEGNN-HLHIGTVVEGELFPGLEVDARIDHERRERTKRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS + PD LRFD +H + +++A+L+ IE  VN  I +N  V T
Sbjct: 567 LLHAALRKVLGEHVSQKGSLVDPDKLRFDFSHLEAVSAADLQEIERQVNQQILENTSVAT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + E A A GA AL G KY D VRV+S+       +S  LCGGTHV+ TG+I L+ I 
Sbjct: 627 EVTDMEQAQAKGALALFGEKYGDSVRVLSMGS---DGYSVELCGGTHVNRTGDIGLMRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG  A   +   +  L+  A  +K S+ ++V +V++  +  R+L+
Sbjct: 684 SESGIASGVRRIEAVTGFGALEWVGSAERTLREAARLVKGSRESLVEKVQQTLDRNRQLE 743

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L          S  ++A +  ++  +   D + L    D L+ K+  G+++
Sbjct: 744 KEIDGLKAKLASSAGSDLASSAVEVAGLRVVAAEMPGADRQALMETADQLKNKLGEGVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + ++ K +++  VT+    R  A D+ +     L  G GGGRP MAQ GG + ++  
Sbjct: 804 LASV-EDGKVTLVSGVTKSATGRVKAGDIMKHLCAQL-DGKGGGRPDMAQGGGNDASRLT 861

Query: 887 QAIAGVASFLKK 898
           + +AGVA +++K
Sbjct: 862 EVLAGVAGWVEK 873


>gi|259418847|ref|ZP_05742764.1| alanyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
 gi|259345069|gb|EEW56923.1| alanyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
          Length = 903

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/896 (48%), Positives = 575/896 (64%), Gaps = 39/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++  Y  
Sbjct: 20  MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 79

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T EFD+
Sbjct: 80  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 139

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D+EAF++WKK  G+  D+IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 140 PKDKLYTTVYHTDDEAFEIWKK-VGVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 198

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 199 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 258

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLFK+LI+AS  VT     G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 259 THDNYETDLFKYLIEASATVTNSDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 318

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG T+P+M  L+PAL ++MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 319 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 378

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD     L + ++L G+ AFKLYDT G PLD+ QD L A+G   +D   F+
Sbjct: 379 KTLDRGLKLLDEASVDLNQGDVLPGETAFKLYDTFGFPLDLTQDALRAKG-VEVDTDGFD 437

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+ ++RA  +GLG     K++F + +  G T+F+GY+                  
Sbjct: 438 AAMKAQKEQSRAGGIGLGDAADVKVYFDIVDAEGTTEFLGYE------------------ 479

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V+ G  VE A  G  V+++ +QTPFY E+GGQ+GDTG    +G 
Sbjct: 480 -----TEKAEGQIVALVKDGAKVETAKKGDSVQIILNQTPFYGESGGQVGDTGVLTVEGG 534

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +I+D  KK EG+F+H A V  G +       + +D+  R Q+  NHSATHLLH AL  
Sbjct: 535 AARISDT-KKVEGLFLHIAEVTEGEISVGSGAAMEVDHTRRSQIRANHSATHLLHEALRN 593

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    + LRFD +H+K ++  +L  I   VND I QN PV TRIM  +DA
Sbjct: 594 ALGEHVAQKGSLNAAERLRFDFSHNKAVSQEDLTKIASEVNDFIRQNSPVSTRIMTPDDA 653

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY + VRVVS+         DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 654 RALGAQALFGEKYGEEVRVVSMGRADTGKGADGDTYSIELCGGTHVKQTGDIGTFVILGD 713

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A  HL  +  ++  +A  LK    +V+ R++ + +E + L   
Sbjct: 714 SASSAGVRRIEALTGAAAFDHLEREAARMAEVAGALKAQSADVMDRLKALMDERKALHNE 773

Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  K Q+ +           +I+   F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 774 ISNLKQQIAMGGGSDGGAETKEISGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 833

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
               + K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + 
Sbjct: 834 A-EDDGKVAVAAGVTDDLTGDISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSG 888


>gi|163736400|ref|ZP_02143819.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
 gi|161390270|gb|EDQ14620.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
          Length = 883

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 438/893 (49%), Positives = 574/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN FTG E   Y+ 
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEIVSSSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AWDL+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWDLITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF++WKK  G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKK-VGVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGTMKALDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS  VT +   G+  V+HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL +A+ +IEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQPMIEETLHQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  LS L +   L G  AFKLYDT G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELSGLDEGAPLPGAAAFKLYDTFGFPLDLTQDALREKGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + ++ G T F+GY+                  
Sbjct: 419 SAMAEQKAKARAAWSGSGESADSTIWFDVADQAGTTDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V  G  V EA  G  V+VV +QTPFYAE+GGQ+GD+G    DG 
Sbjct: 461 -----TEAAEGQIMALVVDGAQVAEAGVGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD  KKA G+F+H   VE G++    +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 516 VVRVTDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHLRRSAIRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K ++  EL+ +  +VN  I QN  V TRIM  +DA
Sbjct: 575 ALGDHVAQRGSLNADDRLRFDFSHNKALSGEELRRVAVDVNRFIRQNTVVETRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+        +DG  +S  LCGGTHV  TG+I    I+S+
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGEAATGKGQDGNTYSIELCGGTHVRQTGDIGTFVILSD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A +HL  +  ++  +A+ LK     V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAEAFAHLDREALRMAEVANSLKAQPEEVMDRLKALMDERKALQNE 754

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++ K Q+ +           ++    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 755 VSQLKQQVAMGGGAGGASETKEVGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +   K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG +
Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866


>gi|330811260|ref|YP_004355722.1| Alanine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379368|gb|AEA70718.1| Alanine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 873

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/912 (42%), Positives = 535/912 (58%), Gaps = 56/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS Q  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RISAVLQHVHSNYEIDLFQSLLSASAQAIGCT--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KAEEEQFAKTLEQGLKILEQDLAELK-GNVVPGDVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   AT+F GY           
Sbjct: 418 -LDEEGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATEFTGY----------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ + AI + G+ V+    GQ+  +V D+TPFYAE+GGQ+GD+
Sbjct: 460 ------------AGTTGSAKIVAIYKDGQSVDILSEGQEGVIVLDKTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K     F+HH ++  G L     +   +D   R   S+NHSATH
Sbjct: 508 GYLQAGSSRFDVRDTTKTGG-AFLHHGVLASGSLMIAAPVAAHVDADVRHATSLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +LK++E+ VN  I +N PV T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKALEEIVNAEIRKNSPVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E A   GA AL G KY D VRV+S+     G  S  LCGG H + TG+I L+ I+
Sbjct: 627 EETDIETAKRKGAMALFGEKYGDSVRVLSM-----GDFSVELCGGIHANRTGDIGLMKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEA+TG  A ++L   +E+LK  A+ +K S+ N++ ++  + E  R L+
Sbjct: 682 SEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAATLIKGSRDNLIDKLSAVLERNRLLE 741

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +               +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 742 KQLEQLQAKAASAAGDDLSAQAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 802 LGSVHEE-KVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGTDVGALD 859

Query: 887 QAIAGVASFLKK 898
            A+A   +F+++
Sbjct: 860 AALAQTVAFVEQ 871


>gi|114328034|ref|YP_745190.1| alanyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
 gi|114316208|gb|ABI62268.1| alanyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
          Length = 945

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/887 (49%), Positives = 586/887 (66%), Gaps = 32/887 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+  + IR TFL +F +NGHE++ SS L+P NDPTL+F NSGMV FKN+FTGQE+  Y  
Sbjct: 66  MATSNDIRATFLNYFARNGHEVVDSSPLVPRNDPTLLFVNSGMVQFKNVFTGQERRPYSR 125

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+++T+EF L
Sbjct: 126 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWNVVTREFGL 185

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              +L +TVY +D++A +LWK I+GL  ++IIRI ++DNFW M +TGPCGPCSEIF+D  
Sbjct: 186 PAEKLLVTVYQDDDDAARLWKSIAGLPEERIIRIASSDNFWRMGDTGPCGPCSEIFYDHG 245

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+E+     R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 246 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYEEGPPGTRVNLPRPSIDTGMGLERLAAVLQG 305

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS + TG   +G +  +HRV+ DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 306 KHDNYDTDTLRALIVASAEATGQDPDGPHKTSHRVVADHLRSTSFLMADGVLPSNEGRGY 365

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G TEPL+  L+PAL  +MG+AY EL+QA+ LI ETLR E+ RF 
Sbjct: 366 VLRRIMRRAMRHAHLMGMTEPLLYRLVPALVRQMGAAYGELVQAQSLITETLRLEETRFK 425

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL +L   +  LG+ + L+GDVAFKLYDT+G PLD+ QD L  +G   +D+  F+
Sbjct: 426 AMLDRGLAMLSDEVGKLGEGQTLSGDVAFKLYDTYGFPLDLTQDALREQGR-AVDVAGFD 484

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR RARA   G G    E +WF ++++ G T+F+GY                   
Sbjct: 485 AAMTEQRRRARAAWSGSGDAAQEGVWFEIRDRVGGTEFLGY------------------- 525

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + + A+V  G + E A +G +V VV +QTPFY E+GGQ+GDTG   G   
Sbjct: 526 ----STEKAEAEIIALVANGALTETAPAGTEVAVVLNQTPFYGESGGQVGDTGIITGPNG 581

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R+ I+D QKK   +FVH   VE G+ +    + + +D+Q R  +  +HSATHLLH AL 
Sbjct: 582 LRIIISDTQKKLGDVFVHLGRVESGLAQIGQPVEVVVDHQRRSAIRAHHSATHLLHEALR 641

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS   PD LRFDV+   PIT  +L  +E  VN +I QN PV TR+M  E 
Sbjct: 642 RRLGTHVAQKGSLNAPDRLRFDVSQPTPITRDDLAVVEAEVNALIRQNSPVNTRLMTPEQ 701

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESS 715
           A+A GA AL G KY D VRVVS+          +S  LCGGTHV  TG+I L  I  ES+
Sbjct: 702 AVAEGAMALFGEKYGDEVRVVSMGAPVEEGKPAYSIELCGGTHVGRTGDIGLFRITGESA 761

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH- 774
           + AG+RRIEA+TG+ A + +   + +L+  AS L+V+ G+V  RV  + EE +KL+    
Sbjct: 762 VSAGVRRIEAVTGEAALAQIAEAERRLQETASLLRVAPGDVTTRVASLLEERKKLEAQLA 821

Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            A+RKL          ++  V   +  + +V  KELK + +A+ ++++SG++ LV  + E
Sbjct: 822 DAQRKLATGGAADKVEEVGGVKLAARNLGDVAPKELKGLAEAIARQLESGVVALVSTA-E 880

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            KASV++ VT DL  RF+AV L R ++  +GG GGGGRP MAQ+GGP
Sbjct: 881 GKASVVVGVTADLTSRFDAVTLVRAASAAVGGKGGGGRPDMAQAGGP 927


>gi|52842026|ref|YP_095825.1| alanyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148359345|ref|YP_001250552.1| alanyl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|296107392|ref|YP_003619092.1| alanyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|59798497|sp|Q5ZUJ9|SYA_LEGPH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830130|sp|A5ICV6|SYA_LEGPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52629137|gb|AAU27878.1| alanyl tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148281118|gb|ABQ55206.1| alanyl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|295649293|gb|ADG25140.1| alanyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|307610501|emb|CBX00082.1| alanyl-tRNA synthetase [Legionella pneumophila 130b]
          Length = 860

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/904 (41%), Positives = 538/904 (59%), Gaps = 52/904 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MKSSEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   + 
Sbjct: 61  ATAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY ED EA  +W K   +S ++  R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 AERLWVTVYKEDLEAEDIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGP 180

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG P    E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A V+Q  
Sbjct: 181 EVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDREGHLHPLPKPSVDTGMGLERLAAVIQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID F++LI+A  Q+        N  + +VI DH+RS SFLI DG+LP+NEGRGYV
Sbjct: 241 HSNYEIDSFQYLIKAIAQLGQ--DIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG   P    L+  L   MG AYPELI +K  IE  L+ E+ +F +
Sbjct: 299 LRRIIRRAVRHGNKLGLPSPFFSKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFTR 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++GL LL   + +L   E L+G+VAFKLYDT+G P+D+  DI+  +GL  ID+ +FNQ
Sbjct: 359 TLEQGLRLLQDHIKNLQGQE-LSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFNQ 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +++QR +++A S           + ++ +    ++F GY+                   
Sbjct: 417 LMQQQREQSQAASQFT------TDYHAVSQLDHQSEFHGYE------------------- 451

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                  + + +  ++Q+G  V+    G K  V+ D TPFYAE+GGQ+GD G  IG    
Sbjct: 452 ----KESMEAKIIGLLQEGNEVKSINKGAKGAVILDHTPFYAESGGQVGDKGLLIGKEFT 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            Q+ D QK  + +  +   V +G L  ++ +   +D   R  + +NH+ATHLLH AL  I
Sbjct: 508 FQVDDTQKVGQAVVHY-GKVIKGELTLDLLIHAQVDNIRRDAIRLNHTATHLLHAALKKI 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           +G HV Q GS +  +  RFD +H + +T  +++ IE+ VN  I  N  V+T++M+ E A 
Sbjct: 567 VGQHVQQRGSLVDAERARFDFSHFEALTPQQIQQIEEVVNAQIRANNEVITQVMDIESAK 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA AL G KY+D VRV+S+     G  S  LCGGTH   TG+I L  IV+E  I +GI
Sbjct: 627 QSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASGI 681

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--- 777
           RRIE +TG+ A + +  Q   + +LA+ LK +  ++  +V ++  + +  + + AK    
Sbjct: 682 RRIEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKVSQLLLDNKNQEKMIAKLLSE 741

Query: 778 KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           K Q +  D+     +I  +N +   +  +DS+ ++  MD L+ +I S +I+L  I +  K
Sbjct: 742 KAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTIEQN-K 800

Query: 836 ASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +V+  V+++++ +  +A  L R        G GGGR  MAQ GG      +  I  +  
Sbjct: 801 MNVIAGVSKNIIGKAPSAAQLVRHLC-----GKGGGRDDMAQGGGGVPEDLNSKIKEIKE 855

Query: 895 FLKK 898
            ++K
Sbjct: 856 MIEK 859


>gi|325121489|gb|ADY81012.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 883

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/913 (42%), Positives = 526/913 (57%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 6   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 66  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 125

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 126 LPKDKLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 186 SEIFFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ +G    + RV+ DH RS  FLIADG+ 
Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDQG--QPSLRVVADHARSCCFLIADGVN 303

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL
Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGDAYPELAARKDVIEATL 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L  D+ + G   FKLYDT+G P D+  DI   R   
Sbjct: 364 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERDFI 422

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + ++ +  G TQF GY           
Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY----------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                       +       + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 ------------INTTGQGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D +K     FVH  IV  G L+ + ++   +    R   + NHSATH
Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGSLKADQNVEAIVKADIREATARNHSATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ +E  VN  I  N  V T
Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANSAVTT 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 632 ELLDIEAAKAKGAMMLFGEKYGDEVRVLSMGSIIDEKNFSIELCGGIHVKRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    L
Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALDVVQKTDADIQHINSLLKAQKDQTVERVQANVELVSAL 751

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     S        IA    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 752 QKQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 812 VLAGVEGD-KVSLLASVASQYTATLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869

Query: 886 DQAIAGVASFLKK 898
            Q IA + ++L++
Sbjct: 870 GQVIAALPAWLEQ 882


>gi|78047331|ref|YP_363506.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|123585336|sp|Q3BUQ7|SYA_XANC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78035761|emb|CAJ23452.1| Alanyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 882

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/909 (42%), Positives = 533/909 (58%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+        + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA       G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ + +TD QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSINVTDTQKFAGQFHGHVGRISEGALALGDVLAGGIDTQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +P T+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPFTADELAVIERKVNAEVRANHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +       +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTSEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +  V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAIDVVGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|325927198|ref|ZP_08188459.1| alanyl-tRNA synthetase [Xanthomonas perforans 91-118]
 gi|325542426|gb|EGD13907.1| alanyl-tRNA synthetase [Xanthomonas perforans 91-118]
          Length = 882

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/909 (42%), Positives = 534/909 (58%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+        + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA       G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKF---GGGVALPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ + +TD QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSINVTDTQKFAGQFHGHVGRISEGALALGDVLAGGIDTQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRANHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +       +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKMGG-----YSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTSEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +  V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAIDVVGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|239503494|ref|ZP_04662804.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB900]
          Length = 878

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/913 (43%), Positives = 527/913 (57%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 61  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 241 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L  D+ + G   FKLYDT+G P D+  DI   RG  
Sbjct: 359 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + ++ +  G TQF GY    G      
Sbjct: 418 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D +K     FVH  IV  G L+T  ++   +    R   + NHSATH
Sbjct: 508 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N  V T
Sbjct: 567 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 627 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV    E    L
Sbjct: 687 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVHANVELVSAL 746

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     +        IA    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 747 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 807 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864

Query: 886 DQAIAGVASFLKK 898
            Q +A + ++L++
Sbjct: 865 GQVMAALPAWLEQ 877


>gi|169633133|ref|YP_001706869.1| alanyl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|169151925|emb|CAP00779.1| alanyl-tRNA synthetase [Acinetobacter baumannii]
          Length = 878

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/913 (43%), Positives = 528/913 (57%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 61  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 241 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L  D+ + G   FKLYDT+G P D+  DI   RG  
Sbjct: 359 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERGFI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RA        +G     + ++ +  G TQF GY    G      
Sbjct: 418 -IDEAGFEVEMAAQRQRA------HDAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D +K     FVH  IV  G L+T  ++   +    R   + NHSATH
Sbjct: 508 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVEAIVKADIREATAHNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +T D LRFD  + +P++  +L+ +E  VN  I  N  V T
Sbjct: 567 LLHAALRQILGSHVQQKGSLVTSDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 627 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    L
Sbjct: 687 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQYINSLLKAQKDQTVERVQANVELVSAL 746

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     +        IA    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 747 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 807 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864

Query: 886 DQAIAGVASFLKK 898
            Q +A + ++L++
Sbjct: 865 GQVMAALPAWLEQ 877


>gi|254805364|ref|YP_003083585.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668906|emb|CBA07085.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha14]
          Length = 885

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/911 (40%), Positives = 524/911 (57%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 12  MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 72  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 191

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 310

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE L
Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEAL 370

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 427

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR+RARA      +         L      T+F GY           
Sbjct: 428 ELDEAGFEREMEAQRTRARAAQSFKANA-------QLPYDGQDTEFKGYSE--------- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G +  +V D TPFYAE+GGQ+GD 
Sbjct: 472 --------------RQTESKVLALYKDGEQVNELNEGDEGAIVIDFTPFYAESGGQVGDV 517

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 518 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 578 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY + VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 870 PAVLDSVKDWV 880


>gi|93006462|ref|YP_580899.1| alanyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|122415158|sp|Q1QA88|SYA_PSYCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|92394140|gb|ABE75415.1| alanyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
          Length = 890

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/913 (39%), Positives = 523/913 (57%), Gaps = 54/913 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  F++FF    H  + SSSLIP NDPTL+FTN+GM  FK  F G E   Y    T
Sbjct: 7   SADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVT 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+  I   W+ LT  +   +D
Sbjct: 67  SQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAID 126

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RLY+T+Y+ D+EAF +W K  G+ +++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 127 KNRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGDNKGAPYASDNFWTMGDTGPCGPCTE 186

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +F+D G  I GGLP    E+G+RYIEIWN VFMQF +Q       LP  S+DTGMGLER+
Sbjct: 187 VFYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGSMLPLPAPSVDTGMGLERI 246

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q    NY+IDLF HL+ A+ ++  ++       + +VI DH+R+ SFLIADG+ P+
Sbjct: 247 SAIMQGVHGNYEIDLFVHLMDAAAEILEIE--NQQQSSLKVIADHIRAVSFLIADGVTPS 304

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  EMG+AYPEL   + +IE  ++ 
Sbjct: 305 NEGRGYVLRRIIRRAVRHGNKLGADSEFFYKMVAPLVAEMGTAYPELKDKQSVIENAIQK 364

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ +F KTL +GL LL   L  L   + L+G+ AFKLYDT+G P+D+  DI   RG   I
Sbjct: 365 EETQFAKTLAQGLRLLASELEGLKDGDTLSGEAAFKLYDTYGFPVDLTADITRERG-IVI 423

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F++ ++ QR RAR       +G  +  + S+ +    T FIGY+ L          
Sbjct: 424 DEAEFDEHMQAQRERAR------DAGKFDVDYSSVIQVENPTTFIGYEQLEEEGV----- 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             + A+ Q G   +    G +  +V D+TPFYAE GGQ+G+ G 
Sbjct: 473 -----------------TIDALYQDGNPADSLTEGMEGVIVLDRTPFYAEGGGQVGELGE 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   ++ D +K  + I  +  +V  G + T+ +    +    R   + NHSATHLL
Sbjct: 516 IRTASGVFEVQDTKKSGQAIIHY-GVVTMGDISTKQTADAQVLSSIRAASAKNHSATHLL 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG  V+Q GS ++ + LRFD ++ KP+++AE+  IE  VN+ I  N P     
Sbjct: 575 HAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSTAEITRIERLVNEQIQANTPARIEN 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCGGTHVSSTGEIMLL 708
           M+ ++A+  GA AL G KY   VRV+++             S  LCGG HV  TG+I +L
Sbjct: 635 MSIDEAMKQGAMALFGEKYGSDVRVLTMGTGSIIDGQRKPFSIELCGGLHVKRTGDIGVL 694

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AGIRRIEA+TG  A  ++   +++L  LAS LKV +  V  RV  + ++ R
Sbjct: 695 KITSESGIAAGIRRIEAVTGMNAIKNIQQSEQQLSELASQLKVKRPEVAQRVRTMADKQR 754

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L+    + + ++     +        IA    +   +S +D K ++++MD ++ K+   
Sbjct: 755 ELEKQLERLEQKIASAQAANLLDDVQTIAGTPVLISTLSGIDGKSIRTLMDDIKSKLPDS 814

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L+G  K+++ ++   V + +  +  A D+ R  A  L GG GGG+P  AQ G P   
Sbjct: 815 VIVLIG-DKDEQLALAASVAKSVTAKVKAGDIIRHLASEL-GGKGGGKPDYAQGGAPKAA 872

Query: 884 KADQAIAGVASFL 896
             +  +  + +++
Sbjct: 873 NTNAVVNALPAWI 885


>gi|294339360|emb|CAZ87716.1| alanyl-tRNA synthetase [Thiomonas sp. 3As]
          Length = 917

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/953 (39%), Positives = 531/953 (55%), Gaps = 96/953 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            NVS IR  FL +F+  G   + SSSL+P NDPTL+FTNSGMV FK++F GQ++  Y+  
Sbjct: 1   MNVSDIREKFLAYFESQGSTRVASSSLVPGNDPTLLFTNSGMVQFKDVFLGQDQRPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYAEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQE------------------ 215
           IF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+    E                  
Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERYAAGEERFDTEDQATARKQAVEA 240

Query: 216 --------------------RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
                               +  LPK  +DTGMGLER+A VLQ   +NY+IDLF+ LI+A
Sbjct: 241 EGGIGLVSKDGEGYKLAVFRQKPLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQALIKA 300

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
           + + T     G+   + +VI DH+R+ +FLI DG++P NEGRGYVLRRI RRA+ +   L
Sbjct: 301 AARETATADLGH--ASLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRINRRAIRHGYKL 358

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G  +P    ++P L  +MG+AYPEL + +  + E L++E+ RF +T++ G+ +LD  L+ 
Sbjct: 359 GVRQPFFYKMVPDLVAQMGAAYPELAEVQGRVAEVLQAEEARFFETIEHGMGVLDTELAA 418

Query: 376 LGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           L      +L G++AFKL+DT G PLD+ QD+    G+  +D  +F+ A+  QR +ARA  
Sbjct: 419 LRAAGGNLLAGELAFKLHDTFGFPLDLTQDVCREHGMK-VDEAAFDAAMARQREQARAAG 477

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                   + +          T+F GY+ L                          + V 
Sbjct: 478 KFKMQAALDYV-------GDKTRFDGYEHLLVK----------------------EARVV 508

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKA 550
           A+ + G  V    +G    VV D+TPFYAE+GGQ+GD+G         +R  + D QK  
Sbjct: 509 ALYKDGTSVPTLQAGDPGVVVLDRTPFYAESGGQVGDSGVLFEGDSCELRFVVHDTQKLQ 568

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             +F HH  +E G L+    +   +D + R+ +  NHS THL+H AL  +LG HV Q GS
Sbjct: 569 ADVFGHHGTLESGSLKVGEIVAAQVDGERRQAVMRNHSVTHLMHKALRLVLGDHVQQKGS 628

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            +  D  RFD  H  P++  E+  +E  VN+ I  N     R+M  ++A   GA  L G 
Sbjct: 629 LVDADKTRFDFAHDAPMSDDEIARVERLVNEEILANAATQARVMPIDEAKGLGAMMLFGE 688

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
           KY D VRV+ +        S  LCGGTHV+ TG+I L  IV E  + AGIRR+EAITG  
Sbjct: 689 KYGDTVRVLDIG------TSRELCGGTHVARTGDIGLFKIVFEGGVAAGIRRVEAITGLN 742

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL---- 786
           A + +  Q+  +  L+  LK        +VE++ E+ R+L+   A+ K Q          
Sbjct: 743 ALAFVQKQNALVARLSRTLKAPAEESAAKVEQLLEQQRQLEKDLAQLKAQQAAAQGDALV 802

Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                I   + +   +  +D+K L+  +D ++ K++  +++L+   +  K  +   V+ D
Sbjct: 803 SQAITIGGTSVLLARMDGLDAKGLREAVDRIKSKLK-TVVVLLASREGDKVQLAAGVSAD 861

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            + +  A DL   +A+ + GG GGGRP  A +GG    + D A+A   S L++
Sbjct: 862 RVGQIKAGDLVSAAAQAV-GGKGGGRPDFAMAGGTQPEQIDAALAQAKSLLQQ 913


>gi|50084439|ref|YP_045949.1| alanyl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|59798530|sp|Q6FCT2|SYA_ACIAD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49530415|emb|CAG68127.1| alanyl-tRNA synthetase [Acinetobacter sp. ADP1]
          Length = 878

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/913 (43%), Positives = 531/913 (58%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A+  AWD LT  +   
Sbjct: 61  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALTFAWDFLTSEQWLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY+TVY  D+EA+ +W K  GL+AD+IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYVTVYHTDDEAYDIWNKEIGLAADRIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GGLP    E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HLI+++ ++  +K EG    + RV+ DH RS  FLIADG+ 
Sbjct: 241 RISAVLQHVNSNYDIDLFQHLIKSACEIINVKDEG--QPSLRVVADHARSCCFLIADGVN 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   +  IE TL
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIDVMGDAYPELKNDQARIEATL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L   +++ G+  FKLYDT+G P D+  DI   R L 
Sbjct: 359 IREEEQFAKTLEQGLKLLEGELTQLS-GKVIPGETVFKLYDTYGFPTDLTADIARERDLE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID + F + +E QR RAR       +G     + S+ +  G TQF GY    G      
Sbjct: 418 -IDEVGFEREMEAQRRRAR------DAGKFAVDYNSIVKVEGETQFDGYHATAG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + GE V+E V G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 -----------------QGEIVAIYKDGEQVDEVVEGDEALIVLNQTPFYAESGGQIGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D    ++ D +K     FVH  IV  G L+    +   +    R   + NHSATH
Sbjct: 508 GLFKNDTGIFEVQDTKKSGG-AFVHQGIVTMGSLKAAQHVDAIVKADIRAATARNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG+HV Q GS +  D LRFD  + +P++  +L+ IE  VN  +  N  V T
Sbjct: 567 LLHAALRQILGTHVQQKGSLVASDILRFDFANDQPVSFEQLQEIERLVNAEVIANSAVTT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 627 ELLDIESAKAKGAMMLFGEKYGDEVRVLSMGSVIDEHNFSIELCGGIHVQRTGDIGLFKI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + AGIRRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E+   L
Sbjct: 687 ISEGGVAAGIRRIEAVTGTKALEVVQKADADIQHINSLLKAQKDQTVERVQAAVEQTSAL 746

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                +   +L     +        IA  + +   +  +D+K L+++ D+++ K++  +I
Sbjct: 747 HKQIEQLNQKLANFQAAELLSQVQNIAGRSTLITTVQNIDAKSLRNLHDSVKSKLEDAVI 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S++  V +       A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 807 VLAGLEGD-KISLIASVAKQYTAHLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864

Query: 886 DQAIAGVASFLKK 898
           +  IA + ++L++
Sbjct: 865 EHVIAALPAWLEQ 877


>gi|71735960|ref|YP_275660.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|83305854|sp|Q48G25|SYA_PSE14 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71556513|gb|AAZ35724.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 874

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|262279704|ref|ZP_06057489.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262260055|gb|EEY78788.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 883

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/913 (43%), Positives = 526/913 (57%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 6   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 66  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSDEWLA 125

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 126 LPKDRLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GGLPGS  E+G+R+IEIWN VFMQF + N      LP  S+DTGMGLE
Sbjct: 186 SEIFFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTNDGVLHPLPAPSVDTGMGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 303

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL
Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATL 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L  D+ + G   FKLYDT+G P D+  DI   R   
Sbjct: 364 VREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERDFI 422

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + S+ +  G TQF GY           
Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAIDYNSIVQVEGETQFDGY----------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                       +       + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 ------------INTTGQGQIIAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D +K     FVH  IV  G L+ + ++   +    R   + NHSATH
Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKADQNVEAIVKADIREATARNHSATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ +E  VN  I  N  V T
Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANTAVTT 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY + VRV+++    D    S  LCGG HV  TG+I L  I
Sbjct: 632 ELLDIEAAKAKGAMMLFGEKYGNEVRVLAMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ +   LK  +   V RV+   E    L
Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALDVVQKTDSDIQHINGLLKAQKDQTVERVQANVELVSAL 751

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     S        IA    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 752 QKQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 812 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869

Query: 886 DQAIAGVASFLKK 898
            Q IA + ++L++
Sbjct: 870 GQVIAALPAWLEQ 882


>gi|104782873|ref|YP_609371.1| alanyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|122402439|sp|Q1I6Z8|SYA_PSEE4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|95111860|emb|CAK16584.1| alanyl-tRNA synthetase [Pseudomonas entomophila L48]
          Length = 874

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/912 (41%), Positives = 539/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +
Sbjct: 61  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWNFLTSDKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W +  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYASDDEAYDIWTQEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ V+Q   +NY+IDLF+ L+ A+ +  G     +   + +V+ DH+RS  FLIADG+L
Sbjct: 241 RISAVMQHVHSNYEIDLFQSLLAAAAEAIGCS--NDEQPSLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL TEMG A+PEL   +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFHKIVAALVTEMGEAFPELKGQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KTEEEQFAKTLEQGLRILEQDLAQLQ-GKVVPGDVVFKLYDTYGFPMDLTGDIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + +E QR RAR+ S           + SL +   AT F+GYD   G      
Sbjct: 418 -IDEAGFEREMEAQRERARSASAFGM------DYNSLVKVDTATDFLGYDTTEG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+ + G+ VE+   G++  VV D+TPFYAE+GGQ+GD+
Sbjct: 465 -----------------QGKVIALYKDGQSVEQLTEGEEGVVVLDRTPFYAESGGQVGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K     F+HH ++  G L    ++   +D   +   S+NHSATH
Sbjct: 508 GYLQAGAARFDVRDTTKTGG-AFLHHGVIASGALTVGATVDARVDADVQHATSLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + +   ++K++ED VN  + +N  V T
Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKALEDIVNREVRRNTEVQT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+
Sbjct: 627 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEAITG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L+
Sbjct: 683 SEGGVASGVRRIEAITGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +  ++     ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   E K  ++  VT+DL  +  A DL + +A V+GG G GGRP MAQ GG +    D
Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSGQLKAGDLMKQAAAVVGGKG-GGRPDMAQGGGVDVASLD 860

Query: 887 QAIAGVASFLKK 898
           QA+A    F ++
Sbjct: 861 QALALAVPFAEQ 872


>gi|53802423|ref|YP_112920.1| alanyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|59798499|sp|Q60BS6|SYA_METCA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|53756184|gb|AAU90475.1| alanyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 867

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/902 (41%), Positives = 533/902 (59%), Gaps = 46/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF   GH ++ SSSL+P NDPTL+FTN+GMV FK++F G+E   Y   
Sbjct: 1   MTSAELRARFLKFFADRGHTVVASSSLVPVNDPTLLFTNAGMVQFKDVFLGREHRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L 
Sbjct: 61  ASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIVYAWEFLTEVLMLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ITVY ED+EA ++W +  G+   +  RI T+DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 PERLWITVYAEDKEAERIWLEEVGVDPGRFTRIATSDNFWSMGDTGPCGPCSEIFYDHGP 180

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG P    E+G+RY+EIWNLVFMQ+E+        LPK S+DTGMGLER+A V+Q  
Sbjct: 181 SVAGGPPGTPEEDGDRYVEIWNLVFMQYERAGDGTLTPLPKPSVDTGMGLERLAAVMQRV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            NNYDIDLF++L++A+ ++ G      +  + RVI DH+RS +FL+ DG+LP+NEGRGYV
Sbjct: 241 RNNYDIDLFRNLVKAAAELAGTTDLAQS--SLRVIADHIRSCAFLVTDGVLPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L+  LC EMG AYPEL++A+  +E+ L  E+ERF +
Sbjct: 299 LRRIIRRAIRHGYKLGIREPFFYKLVGPLCAEMGQAYPELVEARPRVEQVLDKEEERFAE 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++G+ +LD  +  LG   +++GD AF+LYDT+G P+D+  D+    GL  +D+  F +
Sbjct: 359 TLEQGMKILDVAIRDLG-SPVISGDTAFQLYDTYGFPVDLTADVAREHGL-QVDMAGFER 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR RARA             +        A +F GY                    
Sbjct: 417 AMEAQRERARAA------SHFSVDYSQEIHLDVACEFTGY-------------------- 450

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + + A+++ G+ V+   +G+   VV ++TPFYAE+GGQ+GD G    D   
Sbjct: 451 ---RNAVEDTRIVALLRDGQAVDRLEAGEDGVVVLEKTPFYAESGGQVGDRGVIRSDSAV 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+   + +H   +  G L         ++   R   ++NHSATHLLH AL  +
Sbjct: 508 FEVADTRKQGSDLILHRGKLREGALLRGAVCRAEVEQSLRLATALNHSATHLLHAALRRV 567

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P+ LRFD +H +P++  +L  IE  VN  I +N  V   +M ++ A+
Sbjct: 568 LGEHVTQKGSLVDPERLRFDFSHFEPVSPEQLDEIERLVNREIRRNAEVTAEVMAKDAAM 627

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY D VRV+ +     G  S+ LCGG H    G+I L  IVSES + AG+
Sbjct: 628 RLGAMALFGEKYGDDVRVLRI-----GDFSTELCGGIHARRAGDIGLFKIVSESGVAAGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A   +   +  L+ LA  +K  +  +  R+++++E+ R L+    + K +
Sbjct: 683 RRIEAVTGAAAVEAVEATERLLRRLAERMKAGRDTLEERLDQMFEKNRALERELERLKAK 742

Query: 781 LNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
                          IA V  ++  + E D++ L+ ++D L+ ++ S  I+L  + +  K
Sbjct: 743 TAGAAGADLASRAVDIAGVKVLAARVDEADARMLRELVDQLKDRLGSAAIVLAAV-EGGK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT D      A DL    A  + GG GGGRP +AQ+GG    +   A+ GV  +
Sbjct: 802 VSLVAGVTRDQTGHIRAGDLVNSVATRI-GGKGGGRPDLAQAGGNRPEELQGALDGVPEW 860

Query: 896 LK 897
           ++
Sbjct: 861 VR 862


>gi|330988706|gb|EGH86809.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 874

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--SDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|255319660|ref|ZP_05360869.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262378543|ref|ZP_06071700.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255303277|gb|EET82485.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262299828|gb|EEY87740.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 897

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/924 (41%), Positives = 526/924 (56%), Gaps = 62/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 6   MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGAEKRDYVRA 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT  +   
Sbjct: 66  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWEFLTSEQWLA 125

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY TVY  D+EAF +W K  GL A++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 126 LPKDRLYATVYHTDDEAFDIWNKEIGLDAERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GGLP    E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 186 SEIFYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHALPAPSVDTGMGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK------------YEGNNIVNHRVIVDHL 279
           R++ VLQ   +NY+IDLF+HL++A+ ++ G+                +   + +V+ DH 
Sbjct: 246 RISAVLQHVNSNYEIDLFQHLLKAAAEIIGVDTASLEAEAKEKNTPVHYPASLKVVADHA 305

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS  FLIADG+ P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG+AYPE
Sbjct: 306 RSCCFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGTAYPE 365

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L   K  IE  L  E+E+F KTL++GL LL+G L+ L    I+ G++ FKLYDT+G P+D
Sbjct: 366 LEANKARIEAALIKEEEQFAKTLEQGLKLLEGELTQLK-GSIIPGEIVFKLYDTYGFPVD 424

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  DI   R L+ ID   F + +  QR RAR        G     + S+ +    T+F G
Sbjct: 425 LTADIARERDLS-IDEAGFEKEMAAQRQRAREA------GKFAVDYNSIVKVEDETEFSG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD + G                          + AI + G +V+E   G +  +V +QTP
Sbjct: 478 YDAIEG-----------------------QGQIIAIYKDGTLVDEVTEGDEALIVLNQTP 514

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE+GGQ+GDTG    +    ++ D +K     FVH  IV  G L+   ++  T+  + 
Sbjct: 515 FYAESGGQIGDTGIFKNETGIFEVQDTKKSGN-AFVHQGIVTMGNLKVTQNVEATVKAEL 573

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R   + NHSATHLLH AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ IE  V
Sbjct: 574 RAATARNHSATHLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQIERLV 633

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTH 698
           N  +  N  V T +++ E A   GA  L G KY   VRV+S+    +    S  LCGG H
Sbjct: 634 NAEVIANTAVTTELLDIETAKTKGAMMLFGEKYGSEVRVLSMGSIIEEKNFSVELCGGIH 693

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  TG+I L  I SES + AGIRRIEA+TG +A   +   D  +  + S LK  +   V 
Sbjct: 694 VKRTGDIGLFKITSESGVAAGIRRIEAVTGTKALELVQKADSDINQINSLLKAQKDQTVE 753

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVM 813
           RV+   E    LQ    +   +L     +        +A  + +   +  +D+K L+++ 
Sbjct: 754 RVQTAVENVSALQKQIEQLNQKLANFQAAELLSQVQTVAGRSTLITTVQGMDAKSLRNLH 813

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D+ + K+   +I+L G+  + K S++  V +D      A D+ +  A  L GG GGG+P 
Sbjct: 814 DSTKSKLDHAVIVLAGVDGD-KVSLIASVAKDFTSSIKAGDIIKHLATEL-GGKGGGKPD 871

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           +AQ G P   K +Q +A + ++L+
Sbjct: 872 LAQGGAPLNEKFEQVMADLTAWLE 895


>gi|331012342|gb|EGH92398.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 874

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+   I   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGGIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|257482821|ref|ZP_05636862.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628265|ref|ZP_06461219.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330866242|gb|EGH00951.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 874

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|299770946|ref|YP_003732972.1| alanyl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298701034|gb|ADI91599.1| alanyl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 883

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/913 (42%), Positives = 523/913 (57%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 6   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 66  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSDEWLA 125

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 126 LPKDRLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 185

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GGLP    E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 186 SEIFFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 246 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSLRVVADHARSCCFLIADGVN 303

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL
Sbjct: 304 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATL 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L  D+ + G   FKLYDT+G P D+  DI   R   
Sbjct: 364 VREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERDFI 422

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + S+ +  G TQF GY           
Sbjct: 423 -IDEAGFEVEMAAQRQRAR------DAGKFAIDYNSIVQVEGETQFDGY----------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                       +       + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 ------------INTTGQGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 512

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D +K     FVH  IV  G L+ + ++   +    R   + NHSATH
Sbjct: 513 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKADQNVEAIVKADIREATARNHSATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ +E  VN  I  N  V T
Sbjct: 572 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANTAVTT 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY + VRV+++    D    S  LCGG HV  TG+I L  I
Sbjct: 632 ELLDIEAAKAKGAMMLFGEKYGNEVRVLAMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ +   LK  +   V RV+   E    L
Sbjct: 692 TSEGGVAAGVRRIEAVTGTKALEVVQKTDADIQHINGLLKAQKDQTVERVQANVELVSAL 751

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     S        I+    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 752 QKQIEQLNQKLANFQASELIDQVQTISGRQTLITTVQGVDAKSLRNLHDSVKSKLENAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 812 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 869

Query: 886 DQAIAGVASFLKK 898
            Q IA + ++L++
Sbjct: 870 GQVIAALPAWLEQ 882


>gi|253999899|ref|YP_003051962.1| alanyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|253986578|gb|ACT51435.1| alanyl-tRNA synthetase [Methylovorus sp. SIP3-4]
          Length = 874

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/911 (40%), Positives = 519/911 (56%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKSKEIRQQFLDFFASKGHQVVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ + L 
Sbjct: 61  ASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EA+ +W K  G+ ADK+IRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KEKLLVTVYAEDDEAYDIWTKEMGVPADKVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGAHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + VLQ    NY+IDLF+ LI+A+ + T          + +V+ DH+R+ SFLIADG++P 
Sbjct: 241 SAVLQGVHANYEIDLFQALIKAAARETKTTD--LESPSLKVLADHIRACSFLIADGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+P L  EMG AYPEL+  K  + +TL+ 
Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGVRAAFFYKLVPDLVIEMGEAYPELVSNKTRVMDTLKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E++RF +T++ G+ +L+  L+ +     +  NG+ AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEDRFFETIENGMAILETELADIAAKGGKTFNGETAFKLHDTYGFPLDLTADVCRERDVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
                  + A+  Q+ +ARA      S        +L+    ATQF GY+ L        
Sbjct: 419 VDAAAF-DAAMARQKDQARAAGKFKMSA-------NLEYDGAATQFHGYEKLESD----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             ++V A+ + G  V+    G+   VV D TPFYAE+GGQ+GD+
Sbjct: 466 ------------------ALVLALYKDGAAVDSLSEGEVGVVVLDNTPFYAESGGQVGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK    +F HH +V  G +    SL   ++ + R     NHSATH
Sbjct: 508 GELRASDGIFSVEDTQKVQASVFGHHGVVTTGKISKGDSLKARVNTRARAATMRNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +  +  RFD  H+ P+T  E++ +E  VN  I  N     
Sbjct: 568 LMHKALREVLGGHVQQKGSLVDSEKTRFDFVHTAPLTDDEIRQVEALVNAEILANEATQA 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  EDA  +GA  L G KY D VRV+ +        S  LCGGTHVS TG+I L  I 
Sbjct: 628 RVMGIEDAQKTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVSRTGDIGLFKIT 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ES + AG+RR+EA TG+ A   +  Q   L  +A+ LK     V  ++ ++ +  + L+
Sbjct: 682 GESGVAAGVRRVEATTGENALKLMQQQQALLGQIAAELKAPASEVPAKLGQLMDNVKTLE 741

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A+ K +L              +  +  ++  +   D+  L+  MD L+ K++S  I+
Sbjct: 742 KELARLKSKLASSQGDDLVNQAVDLGGIKVLAATLDGADANTLRETMDKLKDKLKSAAIV 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S+   VT DL+ +  A +L    A  +GG G GG+P MA +GG + ++  
Sbjct: 802 LASA-NDGKVSLAAGVTPDLIAKLKAGELVNFVAGQVGGKG-GGKPDMAMAGGTDASQLP 859

Query: 887 QAIAGVASFLK 897
           QA++ V  ++K
Sbjct: 860 QALSSVEGWVK 870


>gi|126462865|ref|YP_001043979.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|205830188|sp|A3PLJ1|SYA_RHOS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126104529|gb|ABN77207.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
          Length = 883

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/874 (49%), Positives = 567/874 (64%), Gaps = 37/874 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D EA ++WKK++GL  ++IIRI TNDNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKEKLLVTVYHTDHEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL + + LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  L HL +   L G+ AFKLYDT+G PLD+ QD L  +G   +D+  F 
Sbjct: 361 QTLERGLRLLEDELGHLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF L E +GAT+F+GYD                  
Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V  G        GQ V+++ +QTPFYAE+GGQ+GDTG    D  
Sbjct: 462 -----TEQAEGQVLALVAAGAETASVGVGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R +ITDV KK +G+F+H A V  G +R      L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRSAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +HS+ ++  EL ++E  VN  I  N  V TRIM+ +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHVS  G+I L  I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGTDGQTYSLELCGGTHVSRLGDIGLCVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TG+ A ++L  Q ++L  +A+ LK +   +V RV+ + EE R+LQ 
Sbjct: 696 DSASSAGVRRIEALTGEGALTYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755

Query: 773 IHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+ + +  +         +I  V F++ ++  V  K++  ++D ++ ++ SG ++L+ 
Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
                KA++   VT DL DR +AV L + +A+ L
Sbjct: 816 -DTGGKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848


>gi|212704759|ref|ZP_03312887.1| hypothetical protein DESPIG_02823 [Desulfovibrio piger ATCC 29098]
 gi|212671822|gb|EEB32305.1| hypothetical protein DESPIG_02823 [Desulfovibrio piger ATCC 29098]
          Length = 889

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/913 (41%), Positives = 531/913 (58%), Gaps = 43/913 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +LEFF +NGH++LPS  LIP NDPTL+FTN+GMV FK  F G+E      
Sbjct: 1   MLTAKEIRRRYLEFFARNGHDILPSGPLIPPNDPTLLFTNAGMVQFKKFFLGEEVRDVPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R  GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK  AI  AW  +T+E +L
Sbjct: 61  VTTSQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAITWAWKFVTEELEL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL++TV+ ED+EA  +W++++GL A++I+R+   DNFW+M +TGPCGPCSEI+ DQG
Sbjct: 121 PKERLWVTVFREDDEAAAIWQEVAGLPAERIVRMGEKDNFWTMGDTGPCGPCSEIYIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +R++EIWNLVF QF+Q     R  L + +IDTGMGLER+A V Q
Sbjct: 181 EDMACGPDCGIGKCDCDRFLEIWNLVFTQFDQHADGTRDRLARPNIDTGMGLERIAAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY------EGNNIVNHRVIVDHLRSSSFLIADGILP 292
            K +N+D DLF+ +IQ + ++ G+KY        +     RVI DH R+++FLIADG LP
Sbjct: 241 GKRSNFDCDLFQDIIQYAAELAGVKYSFSAPDTNDVDTALRVIADHARAAAFLIADGTLP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRR++RRA+ +A L+G  EP +  +   +   MG  YPEL +    I   + 
Sbjct: 301 SNESRGYVLRRLIRRALRFATLMGVHEPFLYKVARKVTEIMGEDYPELTEHADFIARAVH 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF  TL +GL LL+  L+ L K  D+++ G+  FKL DT+G PLDI+ D+   RG 
Sbjct: 361 EEEQRFSLTLGKGLALLEDQLAELEKAGDKVIPGEFCFKLSDTYGFPLDIITDVSEKRGF 420

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLG----SGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
           + +D+  F   + EQR RAR      G     G+   ++  L +    + F GY  L G 
Sbjct: 421 S-VDVAGFEAHMAEQRRRARESQKKSGLLGQDGSGSSLFQQLADDGLQSVFTGYSGLNGQ 479

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +                      V  + + G  VEE  +G+K  VV +QTPFY E+GG
Sbjct: 480 GRI----------------------VALLDESGLSVEELPAGRKGYVVTNQTPFYGESGG 517

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q GDTG   G     ++ D QK A  + VH+  VE+G+LR +  + L+++   R   + N
Sbjct: 518 QAGDTGRMEGPDGAARVLDTQKPAPTLIVHNIEVEQGLLRIDQEVALSVEEDARMATARN 577

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THLLH AL ++LG+HV Q GS +    LRFD +H   +   EL ++E  VN  I  +
Sbjct: 578 HSCTHLLHAALRSVLGTHVKQAGSLVNSQRLRFDFSHIAALPPEELAAVERQVNRAIMAD 637

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            PV T+ M  ++A+AS A AL   KY D VRVVS+   D    S  LCGGTH+S TG+  
Sbjct: 638 YPVCTKEMKHDEAVASVAMALFNEKYGDTVRVVSMGD-DAHTESVELCGGTHLSHTGQAG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              IVSES + AG+RRIEA+TG  A    + Q  +L  L++ LK   G +  RV+ +  +
Sbjct: 697 SFLIVSESGVAAGVRRIEAVTGWNAYDLAVAQRAELHDLSALLKAKPGQLAERVQALHSD 756

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +KL+    K             K   +  V  ++  +  V  K L+ +MD ++ +I SG
Sbjct: 757 VKKLRKASEKAAASPATGADLVQKATEVNGVKLLTAKLDGVPVKALRDIMDDVRSRIPSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +  L  +  E K  +L+ V++DL  RF A  L +  A    GG GGGRP +AQ+GG   +
Sbjct: 817 VACLATVEGE-KVGLLLYVSKDLHGRFTAPALIKDVAAPC-GGSGGGRPDLAQAGGTKAD 874

Query: 884 KADQAIAGVASFL 896
             + A   +   +
Sbjct: 875 GVEAAFDVLRDKI 887


>gi|293608692|ref|ZP_06690995.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829265|gb|EFF87627.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 878

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/913 (42%), Positives = 523/913 (57%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 61  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GGLP    E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ +G    + RV+ DH RS  FLIADG+ 
Sbjct: 241 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDQG--QPSLRVVADHARSCCFLIADGVN 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGDAYPELAARKDVIEATL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L  D+ + G   FKLYDT+G P D+  DI   R   
Sbjct: 359 IREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYDTYGFPTDLTADIARERDFI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + ++ +  G TQF GY           
Sbjct: 418 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY----------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                       +       + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 460 ------------INTTGQGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D +K     FVH  IV  G L+ + ++   +    R   + NHSATH
Sbjct: 508 GIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGSLKADQNVEAIVKADIREATARNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ +E  VN  I  N  V T
Sbjct: 567 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANSAVTT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 627 ELLDIEAAKAKGAMMLFGEKYGDEVRVLSMGSIIDEKNFSIELCGGIHVKRTGDIGLFKI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ +   LK  +   V RV+   E    L
Sbjct: 687 TSEGGVAAGVRRIEAVTGTKALDVVQKTDADIQHINGLLKAQKDQTVERVQANVELVSAL 746

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L     S        IA    +   +  VD+K L+++ D+++ K+++ II
Sbjct: 747 QKQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAII 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 807 VLAGVEGD-KVSLLASVASQYTATLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864

Query: 886 DQAIAGVASFLKK 898
            Q IA + ++L++
Sbjct: 865 GQVIAALPAWLEQ 877


>gi|320323208|gb|EFW79296.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329761|gb|EFW85750.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 874

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  +   VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLAAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|289650414|ref|ZP_06481757.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 874

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQLLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|83858787|ref|ZP_00952309.1| alanyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
 gi|83853610|gb|EAP91462.1| alanyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
          Length = 886

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 450/909 (49%), Positives = 596/909 (65%), Gaps = 38/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ +  IR+ FL+FF K GHE++ S+ L+P +DPTL+F N+GMVPFKN+FTG E+  Y  
Sbjct: 1   MTALRDIRSQFLDFFAKEGHEIVQSAPLVPQDDPTLLFVNAGMVPFKNVFTGAERRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW ++T+EF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDNAIEFAWKMVTQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY ED+EA  LW+KI+GLS D+IIRI+T+DNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYSEDDEAAALWRKIAGLSDDRIIRISTSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG P    E+G+R+IEIWNLVFMQFEQQ   ER  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PDIWGGPPGTPEEDGDRFIEIWNLVFMQFEQQAGGERINLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD+DLFK LI ASE+   +K EG+ + +HRVI DHLRS+SFLIADG+ P+NEGRGY
Sbjct: 241 VHNNYDVDLFKTLINASEEALKVKAEGDALASHRVIADHLRSTSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EP++  L   L  EMG A+PEL +A  +IEETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAHLLGANEPVLFGLAKTLSDEMGEAFPELPRALPVIEETLRGEEERFQ 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LLD   ++L + + L G+ AFKLYDT+G PLD+ +D L  RGL+ +D   F+
Sbjct: 361 RTLGRGLTLLDEATANLKEGDALPGETAFKLYDTYGFPLDLTEDALRTRGLS-VDHAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ ARA   G G    E +WFS++++ GAT F+GY    G              
Sbjct: 420 AAMERQRADARASWTGSGQAAPEALWFSVRDRLGATDFVGYHTHDG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S + AIV  G    E  +GQ  E++F  TPFYAE GGQ+GD G    D  
Sbjct: 466 ---------QSELTAIVSDGAEQSELSAGQGAELIFKSTPFYAEGGGQIGDAGVITFDNG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R  ++DVQK+A  I+ H  ++E G ++   +   ++D + R ++  NHSATHLLH AL 
Sbjct: 517 ARFIVSDVQKRAGSIYAHIGVLEEGGIKIGDAASQSVDAERRTKVRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + PD LRFD +H+K +T AE  +IE  VN +I QN    T  M  E 
Sbjct: 577 DVLGPHVTQKGSYVGPDRLRFDFSHAKALTEAETAAIEAQVNAVIRQNAEAKTAEMTPEK 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AI +GA AL G KY + VRV+++      D   +S  LCGG HV+ TG+I L  IV ESS
Sbjct: 637 AIEAGALALFGEKYGETVRVLAMGDSLKSDDKAYSVELCGGIHVNRTGDIALFKIVGESS 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
             AG+RR+EA+TG+ AR  L  +  K K  A+ LKV    +V R+E +  E + L+   A
Sbjct: 697 AAAGVRRLEAVTGEAARQWLEAEANKAKDAAAALKVPTVELVERIEALQAERKTLERQLA 756

Query: 776 KRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           + K QL +              +I  +  ++ ++  V  K+L+ ++D  +K++ SGI   
Sbjct: 757 EAKKQLAMGGGGGGGAAPAGPEEINGIKLIARVVEGVGGKDLRGLVDEARKQMGSGIAAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG+  + KA++ + +T+DL    +AVD  R  +  +GG GGGGRP  AQ+GGP+G+KA+ 
Sbjct: 817 VGV-NDGKAALAVGLTDDLTGSMSAVDFVRAGSAAVGGKGGGGRPDFAQAGGPDGDKAED 875

Query: 888 AIAGVASFL 896
           A+A +   L
Sbjct: 876 ALAAIRQVL 884


>gi|241759977|ref|ZP_04758075.1| alanine--tRNA ligase [Neisseria flavescens SK114]
 gi|241319431|gb|EER55861.1| alanine--tRNA ligase [Neisseria flavescens SK114]
          Length = 874

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/912 (40%), Positives = 520/912 (57%), Gaps = 59/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTT-ELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 60  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGP
Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+
Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R  
Sbjct: 359 LKNEESRFAQTLETGMALLENALAK--GSKKLDGEIIFKLYDTYGFPYDLTADICRERN- 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +        A      +  + K    L      T+F GY          
Sbjct: 416 IELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE-------- 460

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G +  VV D TPFYAE+GGQ+GD
Sbjct: 461 ---------------RQTESKVLALYKDGEQVNELNEGDEGAVVIDFTPFYAESGGQVGD 505

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 506 VGYIFAGENRFEVHDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V 
Sbjct: 566 HLMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVN 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I
Sbjct: 626 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + 
Sbjct: 681 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 740

Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A+ K +L V        +   +     ++  I    +  L+ ++  L  K  + +
Sbjct: 741 LEKELARAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAV 799

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K
Sbjct: 800 ILLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAK 857

Query: 885 ADQAIAGVASFL 896
             + +  V  ++
Sbjct: 858 LPEVLNSVKDWV 869


>gi|330881471|gb|EGH15620.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 874

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTPVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  +   VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLAAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|54297712|ref|YP_124081.1| alanyl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|59798487|sp|Q5X4B7|SYA_LEGPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|53751497|emb|CAH12915.1| alanyl-tRNA synthetase [Legionella pneumophila str. Paris]
          Length = 860

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/904 (41%), Positives = 540/904 (59%), Gaps = 52/904 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MKSSEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   + 
Sbjct: 61  ATAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY ED EA  +W K   +S ++  R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 AERLWVTVYKEDLEAEDIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGP 180

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG P    E+G+RYIEIWNLVFMQF +  +    +LPK S+DTGMGLER+A V+Q  
Sbjct: 181 EVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDREGHLHLLPKPSVDTGMGLERLAAVIQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID F++LI+A  Q+        N  + +VI DH+RS SFLI DG+LP+NEGRGYV
Sbjct: 241 HSNYEIDSFQYLIKAIAQLGQN--IDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG   P    L+  L   MG AYPELI +K  IE  L+ E+ +F +
Sbjct: 299 LRRIIRRAVRHGNKLGLPSPFFFKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFTR 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++GL LL   + +L   E L+G+VAFKLYDT+G P+D+  DI+  +GL  ID+ +FNQ
Sbjct: 359 TLEQGLRLLQDHIKNLKGQE-LSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFNQ 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +++QR +++A S           + ++ +    ++F GY+                   
Sbjct: 417 LMQQQREQSQAASQFT------TDYHAVSQLDHQSEFHGYE------------------- 451

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                  + + +  ++Q+G  V+    G K  V+ D TPFYAE+GGQ+GD G  IG    
Sbjct: 452 ----KESMEAKIIGLLQEGNEVKSINKGAKGAVILDHTPFYAESGGQVGDKGLLIGKNCS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            Q+ D QK  + +  +   V +G L  ++S+   +D+  R  + +NH+ATHLLH AL  I
Sbjct: 508 FQVDDTQKVGQAVVHY-GEVIKGELTLDLSIHAQVDHIRRDAIRLNHTATHLLHAALKKI 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           +G HV Q GS +  +  RFD +H + +   +++ IE+ VN  I  N  V+T++M+ E A 
Sbjct: 567 VGQHVQQRGSLVDAERARFDFSHFEALNPQQIQQIEEVVNAQIRANNEVITQVMDIESAK 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA AL G KY+D VRV+S+     G  S  LCGGTH   TG+I L  IV+E  I +GI
Sbjct: 627 QSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASGI 681

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--- 777
           RRIE +TG+ A + +  Q   + +LA+ LK +  ++  ++ ++  + +  + + AK    
Sbjct: 682 RRIEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKISQLLLDNKNQEKMIAKLLSE 741

Query: 778 KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           K Q +  D+     +I  +N +   +  +DS+ ++  MD L+ +I S +I+L  I +  K
Sbjct: 742 KAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTIEQN-K 800

Query: 836 ASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +V+  V+++++ +  +A  L R        G GGGR  MAQ GG      +  I  +  
Sbjct: 801 MNVIAGVSKNIIGKTPSAAQLVRHLC-----GKGGGRDDMAQGGGNVPEDLNSKIKEIRE 855

Query: 895 FLKK 898
            ++K
Sbjct: 856 MIEK 859


>gi|326566717|gb|EGE16856.1| alanyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
          Length = 887

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/909 (40%), Positives = 514/909 (56%), Gaps = 54/909 (5%)

Query: 12  LEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAG 71
           L FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + QKCVRAG
Sbjct: 8   LTFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSSQKCVRAG 67

Query: 72  GKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITV 129
           GKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   L + RLY+TV
Sbjct: 68  GKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPKDRLYVTV 127

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGEC 182
           Y  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EIF+D GE 
Sbjct: 128 YHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEIFYDHGEH 187

Query: 183 IPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLP    E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++ ++Q   
Sbjct: 188 IWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERISAIMQGVH 247

Query: 242 NNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            NY+ D+F  L+  +  +       +  N  + +V+ DH+RS +FLIADG++P+NEGRGY
Sbjct: 248 GNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIPSNEGRGY 307

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ +  E+E+F 
Sbjct: 308 VLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAILKEEEQFA 367

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G+  ID   F 
Sbjct: 368 KTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT-IDEAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++ EQR+RAR              + +L +   AT+F+GY+ L                
Sbjct: 427 LSMAEQRTRAREAGKFAM------DYHALIQVDSATEFLGYERLDND------------- 467

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G    +  
Sbjct: 468 ----------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELGEISTESG 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + D QK  + I   H +V+ G +    S    +  Q R   + NHSATHLLH AL T
Sbjct: 518 VFDVLDTQKSGQAIIH-HGVVKMGHINNNQSATAQVASQVRASSAKNHSATHLLHAALRT 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    I++ + A
Sbjct: 577 ILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVEILDIDSA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
              GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I+SE  I 
Sbjct: 637 KNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKIISEQGIS 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ R L+    + 
Sbjct: 697 AGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHLEKQIERL 756

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI-- 830
             +      +        I     +   ++ +D+K L+++ D ++ K+  GI++L  I  
Sbjct: 757 NQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLADGIVILASIYT 816

Query: 831 -SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G  +     + +
Sbjct: 817 ADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGGATDVANLPKLM 875

Query: 890 AGVASFLKK 898
            G+  ++ +
Sbjct: 876 TGLIDWIGE 884


>gi|296313800|ref|ZP_06863741.1| alanine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296839624|gb|EFH23562.1| alanine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 873

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/914 (40%), Positives = 523/914 (57%), Gaps = 59/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTT-ELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 60  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGP
Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG      +  + +VI DH+RS SFLIADG+
Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVIADHIRSCSFLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R  
Sbjct: 359 LKNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN- 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +        A      +  + K    L  +   T+F GY          
Sbjct: 416 IEPDEAGFEREM-------EAQRARARAAQSFKANAQLPYEGQDTEFKGYSE-------- 460

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD
Sbjct: 461 ---------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGD 505

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 506 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V 
Sbjct: 566 HLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVN 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I
Sbjct: 626 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + 
Sbjct: 681 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 740

Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +
Sbjct: 741 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAV 799

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K
Sbjct: 800 ILLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADK 857

Query: 885 ADQAIAGVASFLKK 898
             + +A V  ++K+
Sbjct: 858 LPEMLASVEGWVKE 871


>gi|323142770|ref|ZP_08077483.1| alanine--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322417415|gb|EFY08036.1| alanine--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 874

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/910 (41%), Positives = 536/910 (58%), Gaps = 53/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR+T+LEFF+KNGHE++ SSSL+P NDPTL+FTN+GM  FK+I+ G+E   Y   
Sbjct: 3   MTTDEIRSTYLEFFRKNGHEVVRSSSLVPYNDPTLLFTNAGMNQFKDIYLGKETRPYLRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGK NDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW LLT+ F L 
Sbjct: 63  TTAQKCVRAGGKQNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIYYAWTLLTEGFKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           +  L +TVY +D EA+ +WK + GL A+KIIRI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KESLTVTVYADDNEAYDIWKNVIGLPAEKIIRIGDNKGGAFNSDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+R+IEIWN+VFMQ+ ++       L K  ID G+GLER+
Sbjct: 183 IFYDHGPGVWGGPPGSPEEDGDRFIEIWNIVFMQYNRKADGTFEKLKKPMIDNGLGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NYDIDLF+ LI  + ++  +     +  + RVI DH+RS SFLIADG+LP+
Sbjct: 243 AAVLQGVHSNYDIDLFRTLIAKTAEILNVSD--LSEKSLRVISDHIRSCSFLIADGVLPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ + RL+G  +     L+  LC  MG AYPELI+ + LIE+TL+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGRLMGAKDVFFYKLVGTLCELMGKAYPELIEQRQLIEKTLKK 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F  TLDRGL +LD  L  LG +  + G+V FKLYDT+G P D+ QD++  RG   +
Sbjct: 361 EEEQFLNTLDRGLAMLDSELDKLGANRTIPGEVVFKLYDTYGFPADLTQDVVRDRGYI-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F + + +QR RA++ S           +    +    + F GY+ L          
Sbjct: 420 DMDGFEKEMTKQRERAKSASTFGI------DYNKELKLSDISIFDGYNHL---------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             + ++ +  E +E A + ++V +V D+T FY E GGQ+GDTG 
Sbjct: 464 -------------SCEGKIVSMFKGSEPIESASTDEEVIIVLDKTTFYGEMGGQIGDTGT 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    + + +   + I      VE G      ++   +D Q R+ ++ +HSATHLL
Sbjct: 511 LRCGHNLFIVENTKHVGKAIIHV-GRVELGQFSVGQTVTAEVDAQRRKDIASHHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD LRFD +H  P++  E +++   VN  I +N PV T +
Sbjct: 570 HAALRKVLGDHVFQKGSSVGPDRLRFDFSHPHPLSLDERQAVSALVNKAIRENYPVTTEV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+   A  SGA AL   KY   VRVVS+     G  S  LCGGTHV+ TG++    I+S+
Sbjct: 630 MDLNKAKLSGAMALFDEKYEGEVRVVSM-----GEVSKELCGGTHVARTGDLGYFIIISD 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            SI +GIRRIEA+TG+ A  +       L   ++ L+    +V+ +V+ +    + L+  
Sbjct: 685 ESIASGIRRIEALTGEAAIEYQQHLARMLAYTSTMLQTDNFSVLEKVKGLINNTKSLEHE 744

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +   K ++   D         +I  +  +   +   +++EL+  +D L+  ++S  I+L 
Sbjct: 745 NMLLKEKIVHMDAKALAYDAVEINGIKIVIAKVDSYNARELRLAVDELKNHLKSCAIVLG 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  E K S++  +++DL  +  A +L  ++A  +  G GGGRP MAQ+GG      D+A
Sbjct: 805 TVEGE-KVSLIAALSKDLTSKVKAGELVNVAASCVN-GKGGGRPDMAQAGGTKPEGLDEA 862

Query: 889 IAGVASFLKK 898
           +    +FL +
Sbjct: 863 LEKARTFLTE 872


>gi|313201870|ref|YP_004040528.1| alanyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|312441186|gb|ADQ85292.1| alanyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 874

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/911 (40%), Positives = 520/911 (57%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKSKEIRQQFLDFFASKGHQVVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ + L 
Sbjct: 61  ASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EA+ +W +  G+ ADK+IRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KEKLLVTVYAEDDEAYDIWTREMGVPADKVIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGAHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + VLQ    NY+IDLF+ LI+A+ + T          + +V+ DH+R+ SFLIADG++P 
Sbjct: 241 SAVLQGVHANYEIDLFQALIKAAARETKTTD--LESPSLKVLADHIRACSFLIADGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+P L  EMG AYPEL+  +  + +TL+ 
Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGVRAAFFYKLVPDLVIEMGEAYPELVSNQTRVMDTLKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E++RF +T++ G+ +L+  L+ +     +  NG+ AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEDRFFETIENGMAILETELADIAAKGGKTFNGETAFKLHDTYGFPLDLTADVCRERDVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
                  + A+  Q+ +ARA      S        +L+ +  ATQF GY+ L        
Sbjct: 419 VDAAAF-DAAMARQKDQARAAGKFKMSA-------NLEYEGAATQFHGYEKLESD----- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             ++V A+ + G  V+    G+   VV D TPFYAE+GGQ+GD+
Sbjct: 466 ------------------ALVLALYKDGAAVDSLSEGEVGVVVLDNTPFYAESGGQVGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK    +F HH +V  G +    SL   ++ + R     NHSATH
Sbjct: 508 GELRASDGIFTVEDTQKVQASVFGHHGVVTTGKISKGDSLKARVNTRARAATMRNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +  +  RFD  H+ P+T  E++ +E  VN  I  N     
Sbjct: 568 LMHKALREVLGGHVQQKGSLVDSEKTRFDFVHTAPLTDDEIRQVEALVNAEILANEATQA 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  EDA  +GA  L G KY D VRV+ +        S  LCGGTHVS TG+I L  I 
Sbjct: 628 RVMGIEDAQKTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVSRTGDIGLFKIT 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ES + AG+RR+EA TG+ A   +  Q   L  +A+ LK     V  ++ ++ +  + L+
Sbjct: 682 GESGVAAGVRRVEATTGENALKLMQQQQALLGQIAAELKAPASEVPAKLGQLMDNVKTLE 741

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A+ K +L              +  +  ++  +   D+  L+  MD L+ K++S  I+
Sbjct: 742 KELARLKSKLASSQGDDLVNQAVDLGGIKVLAATLEGADANTLRETMDKLKDKLKSAAIV 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S+   VT DL+ +  A +L    A  +GG G GG+P MA +GG + ++  
Sbjct: 802 LASA-NDGKVSLAAGVTPDLIAKLKAGELVNFVAGQVGGKG-GGKPDMAMAGGTDASQLP 859

Query: 887 QAIAGVASFLK 897
           QA++ V  ++K
Sbjct: 860 QALSSVEGWVK 870


>gi|84686864|ref|ZP_01014748.1| alanyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665061|gb|EAQ11541.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
          Length = 882

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/892 (47%), Positives = 574/892 (64%), Gaps = 40/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F+KNGH ++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MASLNDIRSTFLSYFEKNGHTVVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+EF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIPFAWELITREFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D+EAF++WKK  G+  ++IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 PKDKLYTTVYHTDDEAFEIWKK-VGVPEERIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMRELDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   TG+   G++ V+HRVI DHLRS+SFL+ADG++P+NEGRGY
Sbjct: 240 SHDNYDTDLFKALIEASAHATGVDPYGDHNVHHRVIADHLRSTSFLMADGVMPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+P L  +MG AYPEL QA+ +IEETL +E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPELVRQMGQAYPELGQAQSMIEETLLTEETRFQ 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD  L+ L +   L G+ AFKLYDT G PLD+ QD L  +    +D   F+
Sbjct: 360 ATLDRGLKLLDEELAKLPEGAALPGEAAFKLYDTFGFPLDLTQDALREKDR-LVDTEGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      +W+ + E+ G T+F+GYD                  
Sbjct: 419 AAMAEQKAKARAAWSGSGEAADATVWYDIAEEKGTTEFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V  G+  ++  +G  V++V +QTPFYAEAGGQ+GDTG    +  
Sbjct: 461 -----TEKAEGQIVALVADGDKTDKVDTG-SVQIVVNQTPFYAEAGGQVGDTGTITTETG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++TD  KK  G+F+H A V  G +       LT+++  R  +  NHSATHLLH AL  
Sbjct: 515 KARVTDT-KKVAGVFIHFAEVVEGSIERGQGAELTVEHDRRSAIRANHSATHLLHEALRE 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H+K +T+ E+  +E +VN  + QN PV TRIM  +DA
Sbjct: 574 ALGDHVAQRGSLNAPDRLRFDFSHNKALTADEIGRVERDVNAYVRQNTPVETRIMAPDDA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+         D   +S  LCGGTHV  TG+I    + +E
Sbjct: 634 RALGAQALFGEKYGDEVRVVSMGRAATGKGVDKETYSIELCGGTHVKRTGDIGAFVLTAE 693

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG+ A   L  ++  +  +   LKVS+ +V+ R++ + +E + L   
Sbjct: 694 SASSAGVRRIEALTGEAAMGELRRREMLMSEVEGLLKVSEQDVLTRLQALLDERKTLAGQ 753

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + + +L +   +       ++  V F +  ++ V  ++L  ++D  + ++ SG ++L+
Sbjct: 754 VDQLRRELAMSGGAGAGPDAEQVNGVAFFAQSLTGVSGRDLPPLIDEHKARLGSGAVLLI 813

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
               + KA+V   VT DL D  +AVDL R +   LGG GGGGRP MAQ GG 
Sbjct: 814 A-DVDGKAAVAAGVTPDLTDTVSAVDLVRAAVAELGGKGGGGRPDMAQGGGK 864


>gi|298488157|ref|ZP_07006194.1| Alanyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157436|gb|EFH98519.1| Alanyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 874

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/912 (42%), Positives = 536/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V ++ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SASVVSLYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K     F+HH +V  G L     +   +  + R    +NHSATH
Sbjct: 508 GFLHAGDVRFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPDQLRALEDIVNAEIRKNTEVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IV
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDMSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 SALALAVPFVEQ 872


>gi|258545023|ref|ZP_05705257.1| alanine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258519721|gb|EEV88580.1| alanine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 876

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/893 (41%), Positives = 522/893 (58%), Gaps = 55/893 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL++F ++GH+++ SSSL+P NDPTL+FTN+GMV FK+IFTG E   Y+  T
Sbjct: 8   STAEIRRAFLDYFAEHGHKIVHSSSLVPGNDPTLLFTNAGMVQFKDIFTGSESRDYKRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L  
Sbjct: 68  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWNLLTQVFGLPP 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCSE 174
            +L +TVY ED+EAF +W+   GL  DKIIRI           DNFW+M +TGPCGPCSE
Sbjct: 128 EKLCVTVYHEDDEAFAIWRDKVGLPEDKIIRIGDKPGKAKYESDNFWAMGDTGPCGPCSE 187

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+R+IEIWN+VFMQFE+        LP+ SIDTGMGLER+
Sbjct: 188 IFYDHGPDVWGGPPGSPEEDGDRFIEIWNIVFMQFERDASGTMKPLPRPSIDTGMGLERI 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+ID+F++LI A+ + TG         + +VI DH+R++ FL+ DG+LP 
Sbjct: 248 AAVLQGVHSNYEIDIFRNLIAAAAEATGCDDLAQT--SLKVIADHIRATVFLMVDGVLPG 305

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRIMRRA+ +   LG  +P    L+  L  EMG AYPE+++A+  I + +R 
Sbjct: 306 NEGRGYVLRRIMRRAIRHGYKLGQNQPFFYKLVAPLVAEMGEAYPEIVEAEARITDAVRR 365

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +TL+ GL +L+  L  +   EI  G+  FKLYDT+G P+D+  DI   RGL  +
Sbjct: 366 EEERFAQTLEAGLEVLEKALGEMRGTEI-PGETVFKLYDTYGFPVDLTADIARERGLT-L 423

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  ++ A+ EQR RA+A      +           +  G T F GY+            
Sbjct: 424 DMDGYDAAMAEQRERAKAAGKFDAAQK--------LDISGKTAFDGYE------------ 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S+ +  I   G+ V +  +G +  VV D+TPFY E+GGQ+GD+G 
Sbjct: 464 -----------KESGSAQIMQIFADGKAVTKLDAGARGVVVLDRTPFYGESGGQVGDSGT 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   ++ D QK+ +  F+H   VE+G +    +    ID + R  +  +HSATHLL
Sbjct: 513 LRTTSGVFRVEDTQKQGD-AFLHIGHVEQGDISVGETAQAEIDRERRAAIKRHHSATHLL 571

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL + LG+HV Q GS +     RFD +H K +++A++  +E  +N  I  N PVV   
Sbjct: 572 HKALRSTLGTHVQQKGSLVDERRTRFDFSHDKALSAADIAQVEAMMNAQILGNAPVVIEQ 631

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+R+ A   GA AL G KY D VRVVS+        S  LCGGTHV   GEI L  +VS+
Sbjct: 632 MSRDAAQKKGAMALFGEKYGDVVRVVSMG---DDGFSIELCGGTHVGRLGEIGLAKVVSQ 688

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            ++ AG+RRIE + G  A  HL   D  L   A+ LK    ++  R+  + ++ + L+  
Sbjct: 689 GAVSAGVRRIEVVCGLAALEHLTHSDALLTESAALLKTDGEHLPERISALQQQLKTLEKE 748

Query: 774 HAKRKLQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
               K QL             I     ++     +D+  L+   D L+ ++ + ++++  
Sbjct: 749 VQTLKRQLAQGGDGGGAEIQVINGWKTLALQRDGIDNATLRDTADQLRDRLGADVVVIGS 808

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +  +  A +++ V +   +  +A ++ R  A  + GG GGGRP  AQ+GG N 
Sbjct: 809 VD-DDTARLIVSVGKTA-NGLHAGNIIRELAVHI-GGKGGGRPDFAQAGGKNP 858


>gi|260222905|emb|CBA32940.1| Alanyl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 878

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/917 (39%), Positives = 523/917 (57%), Gaps = 65/917 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +V+ IR +FL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y   
Sbjct: 1   MSVADIRKSFLDFFASKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRNYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ ++  AW+LLT  + L 
Sbjct: 61  ASVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESLNWAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKI---SGLSAD------KIIRIT-------TNDNFWSMAE 165
             +LY TVY ED+EA+ +W+ I   +G + +      +IIRI         +DNFW MA+
Sbjct: 121 AEKLYATVYQEDDEAYAIWEDIFVKAGWTPERVKQEGRIIRIGDNKGGRYKSDNFWMMAD 180

Query: 166 TGPCGPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           TGPCGPCSEIF+D G  IPGG P    E+G+R+IEIWN VFMQF          LP   +
Sbjct: 181 TGPCGPCSEIFYDHGAHIPGGPPGSPDEDGDRFIEIWNNVFMQFNMDETGAVTPLPAPCV 240

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSF 284
           DTGMGLER+A +LQ   +NY+IDLF  LI+A+ + TG         + RVI DH+R+++F
Sbjct: 241 DTGMGLERLAAILQHVHSNYEIDLFDALIKAASRETGCSD--LTNKSLRVIADHIRATAF 298

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           L++DG++P+NEGRGYV RRI+RRA+ +   LG   P    L+  L   MG+AYP +   +
Sbjct: 299 LVSDGVIPSNEGRGYVQRRIVRRAIRHGYKLGQKTPFFHKLVKDLVQVMGAAYPNMASQE 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I E LR E+ERF +TL  G+ +LD  L+  G  ++L G+VAFKL+DT+G PLD+  D+
Sbjct: 359 ARITEVLRVEEERFFETLATGMQILDEALA--GGVKVLPGEVAFKLHDTYGFPLDLSADV 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               G   +D   F  A+E Q+++ RA           K+  +L+       F+GY+ L 
Sbjct: 417 CRENG-VEVDSAGFTAAMEAQKAKGRAAGKF-------KMDKALEYTGAGNTFVGYEHL- 467

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   S+ + A+   G  V E  +GQ   +V D TPFYAE+
Sbjct: 468 ----------------------TQSAKIVALYADGTAVSELKAGQDGVLVLDTTPFYAES 505

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G    D    ++ D QK    +F HH  ++ G+LR   ++   +D   R    
Sbjct: 506 GGQVGDEGAVFSDAGLFEVGDTQKIKADVFGHHGTLKTGVLRVGDAVTAHVDAAKRAATV 565

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHL+H AL  +LG HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  + 
Sbjct: 566 RNHSATHLMHKALREVLGEHVQQKGSLVNAERTRFDFAHNAPVTAEQIRQIEAKVNAEVL 625

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            N     R+M+ E A  +GA  L G KY + VRV+ +        S  LCGGTHV +TG+
Sbjct: 626 ANAAAQARVMDIESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVHATGD 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  +V E  + AG+RRIEA+TG  A  +L   ++ + + A+ LK     +  R+ +I 
Sbjct: 680 IGLFKVVGEGGVAAGVRRIEAVTGANALHYLQDLEDTVGAAAATLKTPVAELGNRLGQIV 739

Query: 765 EEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ + L+   A  K +L          S   +  V  ++  +   D+K L+  MD L+ K
Sbjct: 740 DQVKALEKEVAALKGKLASAQGDELVSSAVDVNGVKVLAAKLEGADAKTLRDTMDKLKDK 799

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +++ +I+L  +  + K  +   VT D   +  A +LA   A  + GG GGG+  MA +GG
Sbjct: 800 LKTAVIVLGAVDGD-KVQIAAGVTNDTTAKVKAGELANFVASQV-GGKGGGKADMAMAGG 857

Query: 880 PNGNKADQAIAGVASFL 896
               K   A+A V +++
Sbjct: 858 TEPAKLAGALASVQAWV 874


>gi|89899401|ref|YP_521872.1| alanyl-tRNA synthetase [Rhodoferax ferrireducens T118]
 gi|122480046|sp|Q221G2|SYA_RHOFD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89344138|gb|ABD68341.1| alanyl-tRNA synthetase [Rhodoferax ferrireducens T118]
          Length = 876

 Score =  876 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/907 (40%), Positives = 524/907 (57%), Gaps = 56/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR  FL+FF   GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 9   SVADIRKIFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRAA 68

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++  W+LLTK + L  
Sbjct: 69  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDSLKWGWELLTKVYKLPA 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY +D+EA+ +W +  GL  ++++RI  N       DNFW MA+TGPCGPCSEI
Sbjct: 129 DKLWATVYIDDDEAYNIWTQEIGLPPERVVRIGDNKGAKYASDNFWMMADTGPCGPCSEI 188

Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS E +G+RYIEIWN VFMQ++ Q       LP   +DTGMGLER+A
Sbjct: 189 FYDHGPAIAGGPPGSPEQDGDRYIEIWNHVFMQYDMQPDGSVKPLPAPCVDTGMGLERLA 248

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG    GN   + RVI DH+R+++FL++DG+LP+N
Sbjct: 249 AILQHVHSNYEIDIFDALIKAAARETGCTDLGNK--SLRVIADHIRATAFLVSDGVLPSN 306

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+P L T MG AYP L      I + L++E
Sbjct: 307 EGRGYVQRRIIRRAIRHGYKLGQKAPFFYKLVPDLVTLMGEAYPGLATQAERIAQVLQAE 366

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT G PLD+  D+   RG   +D
Sbjct: 367 EERFFETLANGMQILDETL--TGDAKVLPGDVAFKLHDTFGFPLDLSADVCRERG-VEVD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F+ A+E+Q+++ RA            +  +L+       F+GY+ L           
Sbjct: 424 EAGFHAAMEKQKAQGRAAGKFR-------MDRALEYSGDGNDFVGYERLTEV-------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + + A+      V E  +GQ   VV   TPFY E+GGQ+GD G  
Sbjct: 469 ---------------TKIVALYADSTPVSELKAGQAGVVVLAATPFYGESGGQVGDQGAI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             DG    + D QK    +F HH +++ G L+    +   ++   R     NHSATHL+H
Sbjct: 514 FSDGAMFDVADTQKIKADVFGHHGVLKSGALKIGDVVTAHVNASLRAATQRNHSATHLMH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  +  RFD  H+ P+T  +++ +E  VN  I  N    +R+M
Sbjct: 574 KALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTDEQIREVEARVNSEILSNAATQSRVM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A  +GA  L G KY + VRV+ +        S  LCGGTHV+ TG+I L  +V+ES
Sbjct: 634 DIDAAQETGAMMLFGEKYGESVRVLDIGA------SRELCGGTHVARTGDIGLFKVVAES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A S+L   ++ +  +A  LK     +  RV  + +  + L+   
Sbjct: 688 GVASGVRRIEAVTGQNALSYLQDLEDTVTQVAGTLKAPVVEINERVAGVLDHLKSLEKEI 747

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L              +  +  +  ++   D+K L+  MD L+ K++S +I+L  
Sbjct: 748 AALKGKLASAQGDELVTQAVDVKGIKVLVAMLEGADTKTLRDTMDKLKDKLKSAVIVLAA 807

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT + + +  A +L    A  + GG GGG+P MA +GG    K   A+
Sbjct: 808 VEGD-KVQIAAGVTSNSVGKVKAGELVNFVASQV-GGKGGGKPDMAMAGGTEPAKLPAAL 865

Query: 890 AGVASFL 896
           A V +++
Sbjct: 866 ASVMAWV 872


>gi|325130665|gb|EGC53406.1| alanyl-tRNA synthetase [Neisseria meningitidis OX99.30304]
          Length = 874

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/911 (40%), Positives = 519/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVTDLVKEMGDAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 859 PAVLDSVKDWV 869


>gi|237799115|ref|ZP_04587576.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021969|gb|EGI02026.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 874

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/893 (43%), Positives = 526/893 (58%), Gaps = 55/893 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G      N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--NNENQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KGEEEQFAKTLEQGLKILEQDLAELK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G      
Sbjct: 418 -LDEEGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G  V     G++  V+ D TPFYAE+GGQ+GD+
Sbjct: 465 -----------------SATVVALYKEGLSVTHLNEGEEGVVILDSTPFYAESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R  ++D  K     F+HH +V  G L     +   +  + R   ++NHSATH
Sbjct: 508 GFLLAGDARFDVSDTTKTGG-AFLHHGVVASGSLNVGAQVETQVADEVRDATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PV+T
Sbjct: 567 LLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPDQLRALEDIVNTEIRKNTPVMT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E A   GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  IV
Sbjct: 627 EETDIETAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHAKRTGDISLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R L+
Sbjct: 683 SEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAAQDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           L  +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG
Sbjct: 803 LGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGG 853


>gi|253702326|ref|YP_003023515.1| alanyl-tRNA synthetase [Geobacter sp. M21]
 gi|251777176|gb|ACT19757.1| alanyl-tRNA synthetase [Geobacter sp. M21]
          Length = 875

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/906 (42%), Positives = 539/906 (59%), Gaps = 43/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F  FFQK GH L+ SS+LIP NDPTL+FTN+GM  FK++F G EK  Y   
Sbjct: 1   MTGKEIRAQFFNFFQKKGHALVESSNLIPRNDPTLLFTNAGMNQFKDVFLGMEKREYLRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L 
Sbjct: 61  VSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTKELGLS 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA  +W    G+  ++I R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 KDRLYVTVYTDDDEAADIWHNQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWN VFMQF +        LPK S+DTGMGLER++ V+Q 
Sbjct: 181 GTGCGSPDCAVGCDCDRYMEIWNNVFMQFNRGKDGVLAPLPKPSVDTGMGLERISAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DL + +I+  E+V+G KY     + V+ RVI DH R+ +FLI DG+LP+NEGR
Sbjct: 241 VTSNYDTDLLQGIIRHIEKVSGKKYRDDERDDVSMRVIADHARAVTFLICDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG  EP++  ++ A+   M  AYPEL++ +  +++ + +E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGIAEPVLFRVVDAVNMMMSDAYPELLEREQYVKKVILAEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+   + L    +++++G++ FKLYDT G P+D+  DI+ + G   +D 
Sbjct: 361 FIETLDRGLAILNEETAALRAKGEKVISGEIIFKLYDTFGFPVDLTADIVESEGFT-LDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR +AR +  G G      I+  L      T F+GY               
Sbjct: 420 DGFALCMEKQRVKARENWKGSGEQGLADIYKELHGTGITTDFLGYSE------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AIV+ G +VEEA +G++VE+V   TPFY E+GGQ GDTG   
Sbjct: 467 ----------QTAFSTISAIVKGGTLVEEAGAGEEVEIVTAATPFYGESGGQAGDTGTIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +++T   +    + VH   V  G +RT  +  L I   +R   + NH+ATHLL  
Sbjct: 517 TGSGHVEVTGSTRPFTDLIVHRGRVVSGAVRTGEAADLKITVAHRAATARNHTATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +TPD LRFD TH  P+T  E++ +E  VN  I  N PV  R M 
Sbjct: 577 ALREVLGEHVKQAGSLVTPDRLRFDFTHFTPMTQEEIRRVEILVNGHIMGNSPVEAREMP 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             DA+A+GA AL G KY D V          G  SS LCGGTHV   GEI    I+SE+ 
Sbjct: 637 ATDALAAGATALFGEKYGDVV-----RVVKVGEVSSELCGGTHVHGAGEIGFFKIISEAG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA TG  A + + G +++ + +A+ LK   G V+ +VE++    R+LQ    
Sbjct: 692 IAAGVRRIEAQTGSGALAVVHGMEDEQRGIATLLKAEGGTVLDKVEKLVAGQRELQKELE 751

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN    +       +   V  +S  +   D+K L+ + D L+++I SGII+L G 
Sbjct: 752 TLQARLNASKSADLIQQVREQNGVKILSVKVEG-DAKGLRELSDTLKQRIGSGIIVL-GT 809

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S   +A++L+ VT DL  R+ A D+ +  A ++ GG GGG+P +AQ+GG       +A+ 
Sbjct: 810 SDAARANLLVAVTADLAGRWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPEHLAEALE 868

Query: 891 GVASFL 896
            V   +
Sbjct: 869 AVYQIV 874


>gi|313902388|ref|ZP_07835791.1| alanyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
 gi|313467319|gb|EFR62830.1| alanyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
          Length = 905

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/910 (40%), Positives = 547/910 (60%), Gaps = 44/910 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+++GH ++PSSSL+P +DPTL+FTN+GMV FK++FTG+EK  Y+  
Sbjct: 16  MPAAEIRERFLRFFERHGHTIVPSSSLVPKDDPTLLFTNAGMVQFKDVFTGKEKVPYKRA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK  AI  AW  LT+E  L 
Sbjct: 76  TTAQKCMRAGGKHNDLENVGKTARHHTFFEMLGNFSFGDYFKREAIHFAWTFLTEELGLP 135

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ T++ +D+EAF LW++++G+ A++I+R+   DNFW+M +TGPCGPCSEI +D+GE
Sbjct: 136 RERLWATIFRDDDEAFGLWQEVTGIPAERIVRLGEKDNFWAMGDTGPCGPCSEIVYDRGE 195

Query: 182 CIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                       + + +R++EIWNLVFMQF +        LP+ SIDTGMGLER+A+V+Q
Sbjct: 196 EFRCDAEVCGIGACDCDRWLEIWNLVFMQFNRDESGRLEPLPRPSIDTGMGLERIASVMQ 255

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGR 297
              +N+D DLF+ L++A E +TG  Y+G       RVI DH R+ +FLIADG+LP+NEGR
Sbjct: 256 GVGSNFDTDLFRPLLRAVEDLTGRPYDGGEAGFPFRVIADHARACTFLIADGVLPSNEGR 315

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           G+VLRRI+RRA+ + R+LG  EP +  L+  +   MG AYPE+ Q    +   +R E+ER
Sbjct: 316 GHVLRRILRRAVRFGRILGLEEPFLYRLVDTVGEVMGDAYPEVRQRADYVRRVIRGEEER 375

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD+G+ +L  V+    +  D +++G+ AF LYDT+G PLD+ +D     GL  +D 
Sbjct: 376 FFRTLDQGMAILAEVIERARQRGDGLIHGEEAFVLYDTYGFPLDLTEDAAEEAGLR-VDR 434

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A+  QR RARA                      AT+F GY+ L            
Sbjct: 435 EGFERAMAVQRQRARAAREVEEGWDPGSPLARALADEPATEFTGYERLED---------- 484

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V+ +V++ E  + A +G++V V+ D+TPFYAE GGQ+GDTG   
Sbjct: 485 -------------EGTVRLLVRRDEPADRADAGEEVGVILDRTPFYAERGGQVGDTGWLE 531

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               RL++ D Q    G  +H A V  G ++    +   +D   R  +  NH+ATHLLH 
Sbjct: 532 TPRARLEVLDTQPLPGGRILHKARVVEGAVQVGDRVRARVDAARRAAIMRNHTATHLLHA 591

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS + PD LRFD TH +  T+ +L++IED +N  I + +PV     +
Sbjct: 592 ALKRVLGDHVNQAGSLVAPDRLRFDFTHFEAPTAGQLRAIEDEINQQILRGIPVRWYWTS 651

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A+ +GA AL G KY + VRVV +     G +S  LCGGTHV ST +I L    +E S
Sbjct: 652 LEEALEAGALALFGEKYGNEVRVVQI-----GDYSLELCGGTHVVSTSDIGLFKFTAEGS 706

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RR+EA+TG  +  +L  Q+  L  LA  L+V   ++  R+E + E +R+L+    
Sbjct: 707 VAAGVRRVEAVTGWGSLEYLRRQEAVLDRLAGTLRVPVDDLPARLEALVESHRELERQLR 766

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + + +L  +       +  ++A V  ++  +   D++ L+   D L+++     ++L G 
Sbjct: 767 QLRSRLARQAADGLLEAAPQLAGVRVIAGELPVDDAEVLRETADYLRQRAGEAAVLL-GA 825

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               +A ++  VT    +R  +A  L    A+ LGGGG GGRP +AQ+GG +  +  +A+
Sbjct: 826 RAGGRALLVAAVTPGAQERGLHAGRLVGEVARRLGGGG-GGRPDLAQAGGRDPGRLPEAL 884

Query: 890 AGVAS-FLKK 898
                 ++++
Sbjct: 885 EQGRRLWMEQ 894


>gi|222110972|ref|YP_002553236.1| alanyl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|221730416|gb|ACM33236.1| alanyl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 874

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/892 (41%), Positives = 513/892 (57%), Gaps = 56/892 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 67  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPP 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI         +DNFW MA+TGPCGPCSEI
Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG P    E+G+R+IEIWN VFMQF+   +     LP   +DTGMGLER+A
Sbjct: 187 FYDHGEHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + TG         + +VI DH+R+++FL+ADG++P+N
Sbjct: 247 AILQHVHSNYEIDLFDALIKAAARETGTSD--LTNPSLKVIADHIRATAFLVADGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP++ + +  I + LR E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVQDLVQQMGDAYPKIREQQARITDVLRVE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  + L GDVAFKL+DT+G PLD+  D+   RG   +D
Sbjct: 365 EERFFETLAHGMEILDSALA--GGAKTLPGDVAFKLHDTYGFPLDLTNDVCRERG-VNVD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E Q+S ARA           K+  +L+    A QF GY+ L           
Sbjct: 422 EAGFATAMEHQKSTARAAGKF-------KMDRALEYTGAANQFTGYEQL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ + A+   G       +GQ   VV D+TPFYAE+GGQ+GD G  
Sbjct: 464 ------------AESAKIVALYVDGTSTAALHAGQSGVVVLDRTPFYAESGGQVGDQGTI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   + D QK    ++ HH  +E G L    ++   +D Q R     NHS THL+H
Sbjct: 512 GAGSACFSVADTQKIKADVYGHHGTLEAGTLNVGDTVQAQVDLQLRAATMRNHSVTHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T+A+++ IE  VN  +  N     R+M
Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNAPLTAAQIREIERLVNAEVLANTDTNARLM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +V+E 
Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIG------TSRELCGGTHVRRTGDIGLFKVVAEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG+ A ++L   +  +   A+ LK     +  R+    ++ + L+   
Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPPAELTARIGGALDQIKTLEKEL 745

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L              +  +  ++  +   D+K L+  MD L+ K+++  I+L  
Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRETMDKLKDKLKTAAIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  + K  +   VT D + R  A DL    A  + GG GGG+P MA +GG N
Sbjct: 806 VDGD-KVQLAAGVTADSIGRVKAGDLVNFVAAQV-GGKGGGKPDMAMAGGTN 855


>gi|121594335|ref|YP_986231.1| alanyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|205829967|sp|A1W7D0|SYA_ACISJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120606415|gb|ABM42155.1| alanyl-tRNA synthetase [Acidovorax sp. JS42]
          Length = 874

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/892 (41%), Positives = 513/892 (57%), Gaps = 56/892 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 67  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPP 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI         +DNFW MA+TGPCGPCSEI
Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG P    E+G+R+IEIWN VFMQF+   +     LP   +DTGMGLER+A
Sbjct: 187 FYDHGEHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + TG         + +VI DH+R+++FL+ADG++P+N
Sbjct: 247 AILQHVHSNYEIDLFDALIKAAARETGTSD--LTNPSLKVIADHIRATAFLVADGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP++ + +  I + LR E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVQDLVQQMGDAYPKIREQQARITDVLRVE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  + L GDVAFKL+DT+G PLD+  D+   RG   +D
Sbjct: 365 EERFFETLAHGMEILDSALA--GGAKTLPGDVAFKLHDTYGFPLDLTNDVCRERG-VNVD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E Q+S ARA           K+  +L+    A QF GY+ L           
Sbjct: 422 EAGFATAMEHQKSTARAAGKF-------KMDRALEYTGAANQFTGYEQL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ + A+   G       +GQ   VV D+TPFYAE+GGQ+GD G  
Sbjct: 464 ------------AESAKIVALYVDGTSTAALHAGQSGVVVLDRTPFYAESGGQVGDQGTI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   + D QK    ++ HH  +E G L    ++   +D Q R     NHS THL+H
Sbjct: 512 GAGSACFTVADTQKIKADVYGHHGTLEAGTLNVGDTVQAQVDLQLRAATMRNHSVTHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T+A+++ IE  VN  +  N     R+M
Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNAPLTAAQIREIERLVNAEVLANTDTNARLM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +V+E 
Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIG------TSRELCGGTHVRRTGDIGLFKVVAEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG+ A ++L   +  +   A+ LK     +  R+    ++ + L+   
Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPPAELTARIGGALDQIKTLEKEL 745

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L              +  +  ++  +   D+K L+  MD L+ K+++  I+L  
Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRETMDKLKDKLKTAAIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  + K  +   VT D + R  A DL    A  + GG GGG+P MA +GG N
Sbjct: 806 VDGD-KVQLAAGVTADSIGRVKAGDLVNFVAAQV-GGKGGGKPDMAMAGGTN 855


>gi|326317055|ref|YP_004234727.1| alanyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373891|gb|ADX46160.1| alanyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 876

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/909 (41%), Positives = 534/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR +FL+FF   GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 9   SVADIRKSFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 68

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L +
Sbjct: 69  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYGLPK 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI         +DNFW MA+TGPCGPCSEI
Sbjct: 129 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 188

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  IPGG PGS  E+G+R+IEIWN VFMQF+         LP   +DTGMGLER+A
Sbjct: 189 FYDHGPHIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERLA 248

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LIQA+ + TG     N   + +VI DH+R+++FL++DG++P+N
Sbjct: 249 AILQHVHSNYEIDLFAALIQAAGRETGTADLAN--PSLKVIADHIRATAFLVSDGVIPSN 306

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I E L++E
Sbjct: 307 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVKDLVQQMGDAYPKLREQEQRITEVLKAE 366

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 367 EERFFETLANGMDILDAALG--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERGVT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A++ Q+++ARA           K+  +L+    A +F GYD L           
Sbjct: 424 EDGFNAAMDRQKAQARAAGKF-------KMDKALEYAGEANRFSGYDGL----------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ + AI   G   +   +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 466 ------------AESAKIVAIYVDGTSAQALEAGQNGVVVLDNTPFYAESGGQVGDQGVI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  + D  K    ++ HH  +E G LR   ++   +D   R     NHS TH++H
Sbjct: 514 HAGGARFAVDDTLKIRADVYGHHGRLESGTLRVGDAVQAEVDAALRAATMRNHSVTHIMH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS +  +  RFD  H+ P+T A+++ IE  VN+ I  N P   R+M
Sbjct: 574 KALREVLGSHVQQKGSLVNAERTRFDFAHNAPVTDAQIREIERRVNEEILANTPTGARVM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV+ TG+I L  +V ES
Sbjct: 634 DIESAQKTGAMMLFGEKYGETVRVLDIG------TSRELCGGTHVARTGDIGLFKVVGES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG  A ++L   ++ +   A  L+     + GR+ +  ++ + L+   
Sbjct: 688 GVAAGVRRIEAVTGAGALAYLQQLEDTVAKAAGALRAPASELAGRIGQALDQVKALEREV 747

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L              +  +  ++  +   D+K L+  MD L+ K++S  I+L  
Sbjct: 748 AALKGKLASSQGDELVGQAVDVKGLKVLAATLPGADAKTLRDTMDKLKDKLKSAAIVLAA 807

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +    K  +   VT D++ +  A +L    A  + GG GGG+P MA +GG +      A+
Sbjct: 808 VD-GAKVQIAAGVTPDVMAKVKAGELVNFVASQV-GGKGGGKPDMAMAGGTDAAALPAAL 865

Query: 890 AGVASFLKK 898
           A VA ++ +
Sbjct: 866 ASVAGWVGE 874


>gi|308389728|gb|ADO32048.1| alanyl-tRNA synthetase [Neisseria meningitidis alpha710]
          Length = 885

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/911 (40%), Positives = 519/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 12  MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 72  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 191

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +VI DH+RS SFLIADG+L
Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 310

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVTDLVKEMGDAYPELKEKQAQIEEAL 370

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 427

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 428 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 472 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 517

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 518 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 578 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 637

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 869

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 870 PAVLDSVKDWV 880


>gi|325144845|gb|EGC67133.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240013]
          Length = 874

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 518/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  D+    G  
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADMARELG-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTTESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 859 PAVLDSVKDWV 869


>gi|302037043|ref|YP_003797365.1| alanyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300605107|emb|CBK41440.1| Alanyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 876

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/903 (42%), Positives = 543/903 (60%), Gaps = 41/903 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ +R  F+++F++ GH  +PS+ LIP  DPTL+FTN+GM  FK +F G+E   Y    
Sbjct: 4   SVNDLRRAFIQYFEQQGHRAVPSAPLIPQADPTLLFTNAGMNQFKRVFLGEETRAYNRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           TVQKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+  W+ LT    L +
Sbjct: 64  TVQKCLRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKEEAIRFGWEFLTSVVGLSK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R++IT++ ED+EA +LW+K  G+S  +I+R    DNFW MA+TGPCGPCSE+ FDQG  
Sbjct: 124 DRMWITIFREDDEADRLWQK-IGVSPSRIVRCGEKDNFWQMADTGPCGPCSELHFDQGPS 182

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           +PG     + EG+R IEIWNLVFMQF + +      LPK SIDTGMGLER+  V Q + +
Sbjct: 183 VPGDA-TPNGEGDRVIEIWNLVFMQFNRDSAGTLNPLPKPSIDTGMGLERLTAVAQGRLS 241

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NYD DLF  L+ A     G +Y        + RVI DHLR+ +FL+ADG+LP+NEGRGYV
Sbjct: 242 NYDSDLFAPLLAAIGTRAGAQYGAVEQADRSMRVIADHLRAITFLMADGVLPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  + RLLG TEP +  L   +  +MG AY EL  A   + E  R E+ERF  
Sbjct: 302 LRRILRRAARHGRLLGITEPFLHELTATVVEQMGEAYHELRPAAGTVAEATRGEEERFIA 361

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLD+GL +L+ +L+ +      +L+G   FKLYDT+G P+D++ +    +    +D   F
Sbjct: 362 TLDQGLPILNDMLTKVRASGQNMLSGTEIFKLYDTYGFPMDLIAEACREQD-IRLDETGF 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A+EEQR+RAR    G  S T       +  + G T F+GYD L               
Sbjct: 421 EAAIEEQRTRARKTG-GFESETARPALSEVAARVGTTAFVGYDHLNS------------- 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                       +V+A+++   +V+EA  G ++EVV D TPFYAE GGQ GD G   G  
Sbjct: 467 ----------EGVVQALLKGDRLVKEAREGDEIEVVLDVTPFYAEGGGQAGDQGLLTGPD 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R++I +  +    + VH  +V  G +R    L L+++ + R+  + NH+ATHL+H AL 
Sbjct: 517 GRVEIRETTRPVPTLIVHKGVVTSGSIREGERLQLSVNRRTRQDAARNHTATHLVHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS + P+ LRFD  H + + S ++  IE  VN+ + Q+ PV T +M  ++
Sbjct: 577 DLLGPHVKQYGSLVAPNRLRFDFAHFRSLASRDIDEIESIVNEQVRQDQPVQTDVMGVQE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+A GA A  G KY D+VRVV ++       S  LCGGTH   TGEI L  IVSES + A
Sbjct: 637 AVAGGALAFFGDKYGDQVRVVHIDT-----FSKELCGGTHCRRTGEIGLFRIVSESGVAA 691

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIE +TG  A   L   +  ++ L+  LKV+ G VV R  ++ E+ ++ +   A+ K
Sbjct: 692 GVRRIECLTGSGALDSLKRLEADVRELSDLLKVAPGEVVSRTRKLSEQLKEKERELAEVK 751

Query: 779 LQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L++      D    +I  V   +     +D   ++++ D L+ K++SG++ L G + + K
Sbjct: 752 LKMASTSSGDSQAREIKGVQVHAQRTDGLDVNGMRALADQLRDKLRSGVVAL-GAANDGK 810

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+L+VVT+DL+ R  A DL +  A  + GG GGGRP MAQ+GG N      A+  V   
Sbjct: 811 VSLLVVVTKDLVGRLKAGDLIKEMATEV-GGTGGGRPEMAQAGGKNPEGLGTALEKVFGL 869

Query: 896 LKK 898
           ++K
Sbjct: 870 VQK 872


>gi|325134725|gb|EGC57364.1| alanyl-tRNA synthetase [Neisseria meningitidis M13399]
 gi|325205670|gb|ADZ01123.1| alanyl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 874

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 518/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  D+    G  
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADMARELG-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 859 PAVLDSVKDWV 869


>gi|84517390|ref|ZP_01004743.1| alanyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
 gi|84508754|gb|EAQ05218.1| alanyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
          Length = 884

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/911 (48%), Positives = 583/911 (63%), Gaps = 42/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F+K GH ++PSS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MTSLADIRSTFLNYFEKQGHRVVPSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT++F +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTRDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF LWKK  G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLTTVYHTDDEAFDLWKK-IGVPEDRIIRIPTDDNFWRMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMRPLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D+ + LI+AS   T    +G    +HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 240 KHDNYDTDVMRALIEASANATSSDPDGPGNTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+ AL  +MG+AYPEL Q + LIEETL +E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVSALVQQMGAAYPELGQGQRLIEETLMNEEIRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L +D  L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELAGLPEDAALPGEAAFKLYDTYGFPLDLTQDALREKGR-AVDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+++ARA   G G      IWF + +  G T F+GYD L                
Sbjct: 419 AAMAAQKAKARAAWSGTGEAADSAIWFDVADLAGPTDFLGYDSLD--------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   V   +KA+V  G +V++A  G  V++V +QT FYAE+GGQ+GD G    D  
Sbjct: 464 --------VEGQIKALVADGAMVQQA--GGAVQIVLNQTSFYAESGGQVGDAGILQTDTG 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             QITD  KK  G+F+H A V  G +       L +D   R  +  NHSATHLL+ AL  
Sbjct: 514 TAQITDT-KKVAGVFIHFATVTNGTIAVGQGAALRVDAGRRAAVQANHSATHLLNEALRE 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG H++Q GS   PD LRFD +H+KP+++ EL  IE +VN +I QN  V TRIM  +DA
Sbjct: 573 TLGDHIAQRGSLNAPDRLRFDFSHTKPVSADELAQIERDVNALIRQNTRVETRIMAPDDA 632

Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+  +D       G  +S  LCGGTHV   GEI     + 
Sbjct: 633 RALGAQALFGEKYGDEVRVVSMGRKDGSGKGAAGNTYSLELCGGTHVRQLGEIGAFVALG 692

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +++  AG+RRIEA+TGQ A  +L  QD++L  +A+ LK    +V  RV+ + +E R L  
Sbjct: 693 DAASSAGVRRIEALTGQAALDYLRAQDQRLADVAAALKAPASDVADRVKALMDERRTLAN 752

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A+ + +L +   +       ++  + F + ++S V  K+L S++D ++  + SG+++L
Sbjct: 753 EVAQLRRELAMGGGAQGASPALQVNGIAFHAQVLSGVTGKDLPSLIDQIKTDLGSGVVLL 812

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + + KA++ + VT DL  R +AVD+ R     LGG GGGGRP MAQ GG +   A+ 
Sbjct: 813 IADTGD-KAAIAVGVTADLTTRVSAVDILRAVTPELGGKGGGGRPDMAQGGGASTQNAEA 871

Query: 888 AIAGVASFLKK 898
           AI    S L+K
Sbjct: 872 AITQAKSILEK 882


>gi|294083659|ref|YP_003550416.1| alanyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663231|gb|ADE38332.1| alanyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 879

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/892 (48%), Positives = 582/892 (65%), Gaps = 35/892 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+ IR TFLE+F+ NGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MASVNDIRATFLEYFKDNGHQVVDSSPLVPQNDPTLMFTNAGMVQFKNLFTGLETRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+LAW+L+T+E+ L
Sbjct: 61  AATSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIELAWNLITREYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +L +TVY ED+EA  LWKKI+GL+ D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DASKLLVTVYHEDDEAADLWKKIAGLNDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG P    E+G+R+IEIWNLVFMQFEQ    ER  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQFEQTAN-ERINLPKPSIDTGMGLERIAAVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDL + LIQAS +   +  +G++ V+HRV+ DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 240 KHDNYDIDLMRALIQASAEAANVAADGDHNVSHRVVADHLRASSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +   +G  +P M  L+PAL  EMG  YPEL +A+ LI ETL+ E+ RF 
Sbjct: 300 VLRRIMRRAMRHLHQMGCQDPTMWRLVPALVAEMGGHYPELGRAQALITETLKLEEGRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL +L+  ++      +L+G  AFKLYDT+G PLD+ QD +       +D+  FN
Sbjct: 360 ETLGRGLRILNDEVAGKAAGGVLDGKTAFKLYDTYGFPLDLTQDFMRGYEW-DVDLDGFN 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ AR    G G   TE IW  L ++ GAT+F+GY                   
Sbjct: 419 SAMEAQKAAARKAWSGSGDAATETIWLDLGQQLGATEFLGY------------------- 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T+     V A+V+ G  +  A +G+ V+++ +QTPFYAE+GGQ+GDTG       
Sbjct: 460 ----STDTAEGQVTALVRDGAAIASAAAGEDVQIITNQTPFYAESGGQVGDTGVISWADG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + D  K   G+FVH A + +G L     + L ID   R +L  NHSATHLLH AL  
Sbjct: 516 AADVADTFKTPMGMFVHRATITKGSLDVGNDVRLDIDVARRLRLRANHSATHLLHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + PD LRFD +H K +T  EL  ++  VN  +  N  V TRIM  E A
Sbjct: 576 VLGEHVAQKGSMVGPDRLRFDFSHPKAMTEDELARVQAIVNSRVQMNSDVSTRIMTPEAA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG----GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           I  GA AL G KY D VRVV +  E         S  LCGGTHV+ TG+I +L ++ ES+
Sbjct: 636 IELGALALFGEKYGDEVRVVQMGGETDIKGRSAWSVELCGGTHVNRTGDISILKVIGESA 695

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           +  G+RRIEA+T   A   +  ++  L   A  LK++   +  RV ++ E+ ++ +    
Sbjct: 696 VAGGVRRIEAVTQAGAVEWIEHRERILSHTAELLKIAPEQLADRVAKLLEDNKRAERDIT 755

Query: 776 KRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
             + +L    +       +I  VNF+  ++ +  ++ELKS+ D +++ +++ +I LV   
Sbjct: 756 MMRRKLAAGGDAGGAGSEQINGVNFVGRLMEDTPARELKSMADEMKQGLENAVICLVATD 815

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
              KAS+++ VT+DL+D  NAVDL R+ +  LGGGGGGGRP MAQ+GGPN +
Sbjct: 816 S-GKASIVVAVTDDLVDAKNAVDLVRVGSAALGGGGGGGRPDMAQAGGPNAD 866


>gi|316983845|gb|EFV62825.1| alanyl-tRNA synthetase [Neisseria meningitidis H44/76]
 gi|325199806|gb|ADY95261.1| alanyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 874

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 515/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RIAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L      + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALVK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY + VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 859 PAVLDSVKDWV 869


>gi|71279113|ref|YP_267790.1| alanyl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|83305842|sp|Q487H5|SYA_COLP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71144853|gb|AAZ25326.1| alanyl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 876

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 535/913 (58%), Gaps = 58/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  FL+FF    H+++ SSSL+P ND TL+FTN+GMVPFK++F G E   Y   
Sbjct: 3   KSTAEVRQAFLDFFATKQHQIVKSSSLVPGNDATLLFTNAGMVPFKDVFLGAETRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT E  L 
Sbjct: 63  TSAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKNDAISYAWEFLTGELGLA 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + +L +TVY  DEEAF  W+   G+  DKIIRI           DNFWSM +TGPCGPCS
Sbjct: 123 KEKLLVTVYATDEEAFSYWRDEVGVPEDKIIRIGDKSANKKYESDNFWSMGDTGPCGPCS 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN+VFMQF +Q+      LP  SIDTGMGLER
Sbjct: 183 EIFYDHGEDIFGGPPGSPDEDGDRFIEIWNIVFMQFNRQSDGRMDPLPNPSIDTGMGLER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+ +  +           + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQNVHSNYEIDIFQALIKDTAALLDCSD--LEHKSLRVIGDHIRSCSFLIVDGVVP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   L  T      L+ +L  +MG AYPEL Q + +IE+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAIRHGHKLEATGHFFHKLVASLIAQMGEAYPELAQQQAIIEKLLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+FG+TLDRG++LL+ +L++L   +I+ GD  FKLYDT+G P D+  DI   R L  
Sbjct: 361 IEEEQFGRTLDRGMILLEDILANLS-GDIIKGDDVFKLYDTYGFPADLTADIARERNLK- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F+ A+++QR RA+  S           +    +    T F GYD           
Sbjct: 419 IDKDGFDVAMKQQRERAQQASQFG------TDYNQQLKSDQNTAFKGYDN---------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                        +  S+ V  +   Q  + V +  SG++  V+ D TPFYAE+GGQ+GD
Sbjct: 463 -------------DSYSATVVELFNSQDQDPVSQLNSGEQGIVILDHTPFYAESGGQVGD 509

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    DG   ++TD  K        H       +     +   I+ + R  +  NH+AT
Sbjct: 510 SGLLHLDGGVFEVTDTIKLGNAF--AHRGTAHTDVGLNRRVKAEINVERRAAIVKNHTAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS    D LRFD +H + +T+ EL  +E  VN+ I +N    
Sbjct: 568 HLLHEALRKVLGEHVTQKGSLCDSDKLRFDFSHFEGVTAQELHDVEQMVNNEIRRNHAKQ 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T  M  E+A A GA AL G KY+D VRVV++     G  S  LCGG HV+ TG+I  L I
Sbjct: 628 TESMYIEEAKAKGAMALFGEKYDDEVRVVTL-----GDFSIELCGGVHVNRTGDIGFLKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSES I AG+RRIEA+TG  A   +  Q   L ++A+ +K    N   +VE +    ++L
Sbjct: 683 VSESGIAAGVRRIEAVTGTGALDFINQQTASLTTIAALVKSDVTNASSKVELLISRSKQL 742

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +  S       +I  V  +   +  V+SK L+ ++D L+ K+QSG+I
Sbjct: 743 EKEIGQLKQELAAQAGSDLVNNTIEINGVKVLIADLGSVESKALRGMVDELKNKMQSGVI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ML   +   K  ++  VT+DL+ R  A DL  + A+ + GG GGGRP MAQ+GG      
Sbjct: 803 MLA-TANGPKVGLIAGVTKDLVGRVKAGDLVNMVAQQV-GGKGGGRPDMAQAGGSQPENI 860

Query: 886 DQAIAGVASFLKK 898
             A+  V+++L +
Sbjct: 861 TSALESVSAWLTE 873


>gi|15677445|ref|NP_274601.1| alanyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|20532266|sp|Q9JYG6|SYA_NEIMB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|7226845|gb|AAF41948.1| alanyl-tRNA synthetase [Neisseria meningitidis MC58]
          Length = 874

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 515/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RIAAVMQHVHSNYEIDLFQDLLKAVARETG-APFRMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L      + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALVK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY + VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 859 PAVLDSVKDWV 869


>gi|332112510|gb|EGJ12303.1| alanyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 877

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/915 (41%), Positives = 530/915 (57%), Gaps = 58/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+TFL+FF+  GH ++PSS ++P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKASEIRSTFLKFFESKGHTIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F L 
Sbjct: 61  TTSQKCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWELLTEHFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L+ TVY ED+EA+ +W K+ GL A++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 121 KDKLWATVYAEDDEAYDIWLKVIGLPAERIVRIGDNKGARYASDNFWMMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS E +G+RYIEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVAGGPPGSPEQDGDRYIEIWNNVFMQFNRTEDGTMHRLPKPSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           A VLQ   +NY+IDLF +L+ A+         +       + +VI DH+R+ +F +ADGI
Sbjct: 241 AAVLQHVHSNYEIDLFVNLLAAARSAVEAAGGQDVDAESPSLKVIADHIRACAFTVADGI 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI RRA+ +   LG  +P    L+ AL  EMG AYPEL + KL I E 
Sbjct: 301 IPGNEGRGYVLRRIARRAIRHGYKLGARKPFFHTLVEALAVEMGEAYPELRRDKLRITEV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ERF +T+  G+ +L+G L+      +++G+ AFKL+DT G PLD+  D+   RG+
Sbjct: 361 LKAEEERFFQTIAHGMEILEGALAS--GATVIDGETAFKLHDTFGFPLDLTADVCRERGV 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F+ A++ QR +AR+ +    +         L     AT F GY+ L       
Sbjct: 419 T-VDGAGFDAAMQRQREQARSKAKFKMAQG-------LAYDGEATTFHGYEHLVCEH--- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V AI   G  V +A +G  V VV D TPFYAE+GGQ+GD
Sbjct: 468 -------------------AKVSAIYVDGTPVTKAQAGDDVVVVLDHTPFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       RL + D  K    +  H A +  G +    +LV  +D + R +   NHSAT
Sbjct: 509 RGELRNGRARLVVEDTVKIQAQVHGHQARIVEGEIEIGDTLVARVDAELRAKTIRNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +TP+  RFD  H+ P+T+A++  +E  VN  I  N    
Sbjct: 569 HLMHKALREVLGGHVQQKGSLVTPERTRFDFAHNAPVTAAQIAQVEALVNAEILANAATQ 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            R M  ++A   GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  I
Sbjct: 629 ARTMAIDEAQKLGAMMLFGEKYGETVRVLDIGG------SRELCGGTHVQRTGDIGLFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            +E  + AGIRR+EA+TG  A ++L   +  L  +A+ LKV+   V  RV+ + E+ R L
Sbjct: 683 AAEGGVAAGIRRVEAVTGDNALAYLQQLEGALGGVAATLKVTPAEVPARVDAVLEQLRAL 742

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                  K +L          S   +  +  ++  ++  D+K L+  MD L+ K++S  I
Sbjct: 743 DKEITALKGRLASAQGDELLASAVDVKGIKVLAATLAGADAKALRETMDKLKDKLKSAAI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +L  +    K  +   VT DL+   +  A +L    A  +GG G GG+P +A +GG +  
Sbjct: 803 VLAAVD-GAKVQLAAGVTGDLVAGGKLKAGELVNFVAGQVGGKG-GGKPDLAMAGGTDAA 860

Query: 884 KADQAIAGVASFLKK 898
              QA+A VA ++ +
Sbjct: 861 ALPQALASVAGWVGE 875


>gi|121635253|ref|YP_975498.1| alanyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|205830172|sp|A1KV20|SYA_NEIMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120866959|emb|CAM10719.1| alanyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|325138605|gb|EGC61164.1| alanyl-tRNA synthetase [Neisseria meningitidis ES14902]
 gi|325142798|gb|EGC65170.1| alanyl-tRNA synthetase [Neisseria meningitidis 961-5945]
 gi|325198706|gb|ADY94162.1| alanyl-tRNA synthetase [Neisseria meningitidis G2136]
          Length = 874

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/911 (40%), Positives = 519/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GSKKLDGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 859 PAVLDSVKDWV 869


>gi|262195176|ref|YP_003266385.1| alanyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
 gi|262078523|gb|ACY14492.1| alanyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
          Length = 890

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/918 (41%), Positives = 538/918 (58%), Gaps = 54/918 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R++FL+FF   GHE + S+SL+P  DPTL+FTN+GMVPFK++FTG +       
Sbjct: 1   MKAAQVRSSFLDFFAARGHERVHSASLVPVGDPTLLFTNAGMVPFKDVFTGHQTRAIPRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGKHNDLD VG+T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ + +D
Sbjct: 61  TSSQKCVRAGGKHNDLDQVGKTARHHTFFEMLGNFSFGDYFKKDAIAWAWELLTEVYGID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RL ITV+          D+EA  +W +++G+ +++II +  ++NFW M ETGP GPCS
Sbjct: 121 KERLVITVFAGDSELGVGADDEARAIWGEVTGMPSERIIGLGKSENFWMMGETGPMGPCS 180

Query: 174 EIFFDQGECIPGGLPGSSEEGE---RYIEIWNLVFMQFE-QQNKQERFILPKMSIDTGMG 229
           EI +  G   P  LPG+  +      ++EIWNLVFMQ+E ++       LP  SIDTG G
Sbjct: 181 EIHY-FGAGKPDALPGTDPDAPVWSGWLEIWNLVFMQYERREPGGALHKLPAPSIDTGAG 239

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
           LER+ +VLQ  ++NYD DLF+ L+ ++ ++ G +Y  +G+   + RVI DH R+++FL+A
Sbjct: 240 LERVTSVLQGVSSNYDTDLFQPLLHSAAELCGKRYGEDGDADTSMRVIADHARATAFLVA 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P    + YVLRRI RRA+ + +LLG  EP M  +   +  EM  AYPEL +   +I
Sbjct: 300 DGVFPDKTDKEYVLRRIFRRAVRHGKLLGIEEPFMHRMCARVVEEMKDAYPELAERATVI 359

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            E    E++RF  TLDRGL LL+     +   K   ++GD  F+LYDT+G P D+ + I 
Sbjct: 360 HEITLEEEKRFRATLDRGLNLLEEEFGRMQAAKSSTVSGDKVFQLYDTYGFPSDLTEIIA 419

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G  GID   F + LE+ R R++A           +++ +L  + GAT F+GY+    
Sbjct: 420 DEHGY-GIDHEGFREELEQARERSKAAHSTGVGEG--EVFKTLAGELGATSFLGYE---- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  S  V A+V  GE VE A +G +V    DQTPFYAE+G
Sbjct: 473 -----------------GEGLSGSGQVMALVVDGERVERAEAGAQVAFACDQTPFYAESG 515

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GD G A  +   R++I D +K +   FVH   V  G +     L   +D + R ++ 
Sbjct: 516 GQIGDCGEARSEAGARVRIDDTRKPSGDTFVHIGEVLEGAIALGDQLGFEVDGERRARIR 575

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL   LG HV+Q GS + PD LRFD  H  P++  + + +ED VN  I 
Sbjct: 576 ANHSATHLLHLALKKTLGDHVAQKGSSVGPDRLRFDFAHFSPMSDEQTQQVEDWVNAEIR 635

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N   VT +M+  +A   GA A+ G KY D+VRVV +     G  S   CGGTHV   G+
Sbjct: 636 KNRDSVTDVMSLSEAKERGAVAMFGEKYGDKVRVVGI-----GSESLEFCGGTHVHRAGD 690

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  IVSESS+  G+RRIEA+TG  A  ++   + +L ++   LKV+   V GRV+++ 
Sbjct: 691 IGLFKIVSESSVAQGVRRIEAVTGAGALEYVRRVEGELSAVGGRLKVAPLEVAGRVDKLQ 750

Query: 765 EEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE R  +   A+ K +L             +IA V  ++      D+K L++  D L+ +
Sbjct: 751 EELRAREREVAELKAKLAAGGSRDLMSEVEEIAGVKVLAVATEVDDAKTLRTTGDTLRDR 810

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           + SG+++L G+  E K ++L +V++DL  R +A  L +  A+ L GG GGGRP MAQ GG
Sbjct: 811 LGSGVLLLCGV-GEDKVALLAMVSKDLTKRVHAGKLLQAVAETL-GGRGGGRPDMAQGGG 868

Query: 880 PNGNKADQAIAGVASFLK 897
            + ++   A+    SFL 
Sbjct: 869 KDPSQVPAALERARSFLN 886


>gi|269214760|ref|ZP_05987102.2| alanine--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269209090|gb|EEZ75545.1| alanine--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 885

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/912 (40%), Positives = 520/912 (57%), Gaps = 58/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 12  MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 72  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 191

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF++L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 252 RMAAVMQHVHSNYEIDLFQNLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 310

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           PANEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 311 PANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEAL 370

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 427

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L  +   T+F GY           
Sbjct: 428 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYEGQDTEFKGYSE--------- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 472 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 517

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 518 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 578 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFLK 897
            + +A    ++K
Sbjct: 870 PEMLASAEGWVK 881


>gi|121608636|ref|YP_996443.1| alanyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
 gi|205830282|sp|A1WIG8|SYA_VEREI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|121553276|gb|ABM57425.1| alanyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 872

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/907 (40%), Positives = 522/907 (57%), Gaps = 56/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR +FL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 5   SVADIRKSFLDFFVAKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYSRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  ++Q AW+LLT+ + L  
Sbjct: 65  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLQWAWELLTEVYRLPA 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175
            RL  TVY +D+EA+ +W +  GL  +++IRI         +DNFW MA+TGPCGPCSEI
Sbjct: 125 ERLLATVYQDDDEAYDIWTREIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 184

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D       G      E+G+R+IEIWN VFMQF          LP   +DTGMGLER+A
Sbjct: 185 FYDHGPGIPGGPPGSPDEDGDRFIEIWNNVFMQFNMAADGSVTPLPAPCVDTGMGLERLA 244

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ+  +NY+IDLF+ LI A+ + TG K  G+   + RVI DH+R+S+FL++DG+LP +
Sbjct: 245 AVLQQVHSNYEIDLFEQLIAAASRETGEKDLGHK--SLRVIADHIRASAFLVSDGVLPGS 302

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRIMRRA+ +   LG   P +  L+  L   MG+AYP L   +  I + L++E
Sbjct: 303 EGRGYVQRRIMRRAIRHGYQLGQRAPFLHRLVADLVRLMGAAYPSLRAQQQRIADILKAE 362

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT+G PLD+  D+   RG   +D
Sbjct: 363 EERFFETLAHGMEILDAALD--GGAKLLPGDVAFKLHDTYGFPLDLSADMCRERG-VAVD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F+ A+E Q+++ARA           K+  +L+   GA++F GY+ L G         
Sbjct: 420 EAGFHLAMERQKTQARAAGKF-------KMERALEYTGGASRFTGYEDLAG--------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + AI   G  V    +GQ   +V D+TPFYAE+GGQ+GD G  
Sbjct: 464 --------------TAKITAIYAAGTSVAALKTGQHGVLVLDRTPFYAESGGQVGDQGLI 509

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D  K    +  HH  +E G L    ++   ++   R     NHSATHL+H
Sbjct: 510 SSGSARFAVDDTLKIKADVHGHHGRLEDGTLNVGDTVQARVNTALRAATMRNHSATHLMH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS +  +  RFD  H+  ++SAEL+ IE  VN+ I  N P   R+M
Sbjct: 570 QALRAVLGSHVQQKGSLVNAERTRFDFAHNAAVSSAELREIERRVNEEILANQPTQARVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A +SGA  L   KY   VRV+ +        S  LC GTHV  TG+I L  +V+E 
Sbjct: 630 DIEAARSSGAMMLFDEKYGAAVRVLDIGS------SRELCAGTHVQRTGDIGLFKVVAEG 683

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG  A + L   ++ +   A  L+     + GR+ +  +  R L+   
Sbjct: 684 GVAAGVRRIEAVTGSHALAWLQQLEDTVNQAADTLRAPVAELNGRISQALDNARALEKEV 743

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L             +I  +  ++  +   D+K L++ MD L+ ++++  I+L  
Sbjct: 744 AALKSRLAASQGQELLARAVQIKGLAVLAATLPGADAKTLRATMDQLKDQLKTAAIVLAA 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D + R  A DL    A+ + GG GGG+P MA +GG +      A+
Sbjct: 804 VDGD-KVQLAAGVTADSVGRIQAGDLVNFVARQV-GGKGGGKPDMAMAGGTDAAGLPAAL 861

Query: 890 AGVASFL 896
           A VA ++
Sbjct: 862 ASVAGWV 868


>gi|90416725|ref|ZP_01224655.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90331478|gb|EAS46714.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 864

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/901 (41%), Positives = 543/901 (60%), Gaps = 47/901 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL ++    H ++PSSSL+P NDPTL+FTN+GMV FK++F G EK  Y   
Sbjct: 1   MKSADIRDAFLNYYASKQHSIVPSSSLVPGNDPTLLFTNAGMVQFKDVFLGAEKRDYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L 
Sbjct: 61  VSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWEFLTEVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITV+  D+EA  +W    G+  +++ R+   DNFW M +TGPCGP +EIF+D GE
Sbjct: 121 KERLWITVHISDDEAADIWVNEIGIDPNRLSRL-DEDNFWQMGDTGPCGPSTEIFWDHGE 179

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            IPGG PGS ++  +RYIEIWNLVFMQFE+ +  +   LPK SIDTGMGLER+A V+Q  
Sbjct: 180 DIPGGPPGSPDDDLDRYIEIWNLVFMQFERDSTGKMTPLPKPSIDTGMGLERVAAVMQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            NNYDIDLF+HLI+A+ ++ G+     N  + +V+ DH+RS +FL+ DG++P+NEGRGYV
Sbjct: 240 HNNYDIDLFQHLIKAAAKIIGVTDLAEN--SLKVVADHIRSCAFLVVDGVVPSNEGRGYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG +      L+ +L   MG AYPEL+  +  I  T++ E+E+F +
Sbjct: 298 LRRIIRRALRHGHNLGASGSFFHKLVVSLGEVMGEAYPELLSMQQEIIVTIKKEEEQFAR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD+G+ +L+  L +L  ++ L G++ F+LYDT G P D+  DI   RG + +D+  + +
Sbjct: 358 TLDKGMGVLEAALENLTAEQ-LPGELIFQLYDTFGFPTDLTNDIARERGYS-MDMEGYEE 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E QR+RAR+ S           +       G+T+F+GY+ L                 
Sbjct: 416 CMEAQRARARSASQFG------LDYSESIRVEGSTEFVGYNSLEH--------------- 454

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S+ V A+   GE V  A    +V V+   TPFYAE+GGQ+GD+G       +
Sbjct: 455 --------SADVVALYSAGEEVSAAGMDAEVAVILGSTPFYAESGGQVGDSGYLQTASAK 506

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++TD +K  E   +H   V  G L    ++  T+D   R   ++NHSATHLLH AL  I
Sbjct: 507 IEVTDCRKAGEH-HLHIGKVLSGELNVGDAVTATVDCSVRTATALNHSATHLLHSALQQI 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +    LRFD +H + I++ +++ IE  VN  I +N PV T +M+ ++A+
Sbjct: 566 LGEHVNQKGSLVDSQRLRFDFSHGESISAQQIRDIEHRVNREILRNTPVQTDVMSMDEAV 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY   VRV+S+    GG  S  LCGGTH + TG+I LL I +ESS+ AG+
Sbjct: 626 EKGAMALFGEKYGSEVRVLSM----GGDFSVELCGGTHANRTGDIGLLKISAESSVSAGV 681

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A ++     + +  +A+ L+ ++ +V  +  ++ E+ RKLQ      K +
Sbjct: 682 RRIEAVTGEAAIAYCDALQDTVSEMANVLRAARHSVADKARQVVEDNRKLQKEIDALKSK 741

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L             +I   + +S ++   D+K L+ V D ++ K+QSG+ ML  +  + K
Sbjct: 742 LANASGNDLMAGLREINGFSVLSTVVEGADAKSLRGVADQVRSKLQSGVFMLAAVDGD-K 800

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           A+++  VT+DL D+  A DL +     +  G GGGR  MAQ    +      A+  V  +
Sbjct: 801 AALVAGVTQDLTDKLKAGDLLKYVTAQV-DGKGGGRADMAQGAAGSTVNLAAALDSVYDW 859

Query: 896 L 896
           +
Sbjct: 860 V 860


>gi|262375452|ref|ZP_06068685.1| alanyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262309706|gb|EEY90836.1| alanyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 892

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/923 (41%), Positives = 516/923 (55%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT  +   
Sbjct: 61  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNEEWLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY TVY  D+EAF +W K  GL A +IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYATVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD GE I GGLP    E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGEHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT------------GMKYEGNNIVNHRVIVDHL 279
           R++ VLQ   +NY+IDLF+HL++A+ ++                       + +V+ DH 
Sbjct: 241 RISAVLQHVNSNYEIDLFQHLLKAAAEIIGLNTTALEAEAAEKGTPVQYPASLKVVADHA 300

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS SFLIADG+ P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPE
Sbjct: 301 RSCSFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGSFFHKMLKPLIEVMGDAYPE 360

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L   +  IE  L  E+E+F KTL++GL LL+G L+ L    ++ G+V FKLYDT+G P D
Sbjct: 361 LAAQQARIEAQLLKEEEQFAKTLEQGLKLLEGELAQLK-GSVIPGEVVFKLYDTYGFPTD 419

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  DI   R L  ID   F   +  QR RAR       +G     + S+ +  G TQF G
Sbjct: 420 LTADIARERDLT-IDEAGFETEMAAQRQRAR------DAGKFAIDYNSVVKVEGETQFDG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD   G                          + AI + GE V+E   G +  +V +QTP
Sbjct: 473 YDATAG-----------------------EGQIIAIYKDGEQVDEVFEGDEALIVLNQTP 509

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE+GGQ+GDTG    D    ++ D +K     FVH  IV  G L+   ++  T+    
Sbjct: 510 FYAESGGQIGDTGIFKNDTGIFEVQDTKKSGG-AFVHQGIVTMGNLKVTQNVEATVKADI 568

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R   + NHSATHLLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ IE  V
Sbjct: 569 RAATARNHSATHLLHAALRQILGSHVQQKGSLVASDVLRFDFANDQPVSFEQLQEIERLV 628

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTH 698
           N  +  N  V T +++ E A A GA  L G KY D VRV+S+    +    S  LCGG H
Sbjct: 629 NAEVIANTAVSTELLDIESAKAKGAMMLFGEKYGDEVRVLSMGSVIEEKNFSIELCGGIH 688

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  TG+I L  I SE  + AG+RRIEA+TG +A       D  +  +   LK  +   + 
Sbjct: 689 VKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKAVEVAQKADRDINMINGLLKAQKDQTLE 748

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813
           +VE + +    LQ    +   +L              IA    +   +  +D+K L+++ 
Sbjct: 749 KVEALVDTASSLQKQIEQLNQKLASLQAGELLSQVQSIAGRATLITTVENMDAKALRNLH 808

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D ++ K+++ +I+L G+  + K S++  V +D      A D+ +  A  L GG GGG+P 
Sbjct: 809 DGVKSKLENAVIVLAGVEGD-KVSLIASVAKDFTASIKAGDIIKHLANEL-GGKGGGKPD 866

Query: 874 MAQSGGPNGNKADQAIAGVASFL 896
           +AQ G P   K    +A + ++L
Sbjct: 867 LAQGGAPLNEKFAPVMADLTAWL 889


>gi|77460496|ref|YP_350003.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|123603611|sp|Q3K892|SYA_PSEPF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|77384499|gb|ABA76012.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 874

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/912 (42%), Positives = 535/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +
Sbjct: 61  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWNFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +   + +V+ DH+RS  FLIADG+L
Sbjct: 241 RISAVLQHVHSNYEIDLFQSLLAASAKAIGCT--NDAQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYLIVAALVAEMGEAFPELKSQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KAEEEQFAKTLEQGLKILEQDLAELK-GDVVPGDVVFKLYDTYGFPMDLTADIARERSLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + +E QR RAR+ S           + SL +    T+F GY    G      
Sbjct: 418 -IDEAGFEREMEAQRVRARSASSFG------LDYNSLVKVDVDTEFTGYHATSG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ + G+ V+    GQ+  VV +QTPFYAE+GGQ+GD 
Sbjct: 465 -----------------SAKVVALYKDGQSVDVLSEGQEGVVVLNQTPFYAESGGQVGDC 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K     F+HH ++  G L     +   ++   R   S+NHSATH
Sbjct: 508 GYLQAGNSRFDVRDTTKTGG-AFLHHGVLASGSLIVGAPVETHVEADVRHATSLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   ++K++ED VN  I +N  V T
Sbjct: 567 LLHAALRKVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNSAVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E A   GA AL G KY D VRV+S+    GG  S  LCGG H + TG+I LL I+
Sbjct: 627 EETDIETAKQKGAMALFGEKYGDNVRVLSM----GGDFSVELCGGIHANRTGDIGLLKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R L+
Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           S   +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAAAAAGDDLSASAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG +    D
Sbjct: 803 LGSVHEE-KVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALD 860

Query: 887 QAIAGVASFLKK 898
            A+A    F+++
Sbjct: 861 GALALTVPFVEQ 872


>gi|325140755|gb|EGC63269.1| alanyl-tRNA synthetase [Neisseria meningitidis CU385]
          Length = 881

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 515/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 8   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 68  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 188 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 248 RIAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 306

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 366

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L      + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 367 KNEESRFAQTLETGMALLENALVK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 423

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 424 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 468 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 514 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 574 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY + VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 634 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 808 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 866 PAVLDSVKDWV 876


>gi|256830944|ref|YP_003159672.1| alanyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256580120|gb|ACU91256.1| alanyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 879

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/910 (40%), Positives = 535/910 (58%), Gaps = 43/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FLE+FQ++GH + PSSSL+P +DPTL+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MISAGEIRKRFLEYFQQHGHSVQPSSSLVPQDDPTLLFTNAGMVQFKKIFLGQEKRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+LAW+ +T E  L
Sbjct: 61  AATSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRLAWNFVTVELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L+++++ +D+EA +LW+K++ +  ++I R+   DNFW+M +TGPCGPCSEI+ DQG
Sbjct: 121 DKEKLFVSIFRDDDEAGELWQKVASVPGERIFRLGEKDNFWAMGDTGPCGPCSEIYVDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +  G        + +RY+EIWNLVFMQF +        LPK SIDTGMGLER+  V Q
Sbjct: 181 ADMACGPDCGIGKCDCDRYLEIWNLVFMQFNRSEDGTLTPLPKPSIDTGMGLERITAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
            K +N+D DLF+ LIQA  +  G+ Y          RVI DH RS +FL+ADG+LP+NEG
Sbjct: 241 GKRSNFDTDLFQGLIQAMAKKAGVAYHQGEDSDTALRVIADHSRSIAFLLADGMLPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + +LLG+ EP +      + +EMG  +PEL+ ++  +   +R E+E
Sbjct: 301 RGYVLRRLIRRAYRFGKLLGFDEPFLCETTDQVVSEMGDTFPELVASREFMVRVVRQEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RFG+TLD+GL +L+  ++ L     + + G+ AFKLYDT+G PLDI+ DI   +G   +D
Sbjct: 361 RFGETLDKGLRILEDEMASLAAAGSKTITGETAFKLYDTYGFPLDIVNDIAEKQGF-LVD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + +  Q+ +++    G G       + +L      ++FIGYD L  +  +     
Sbjct: 420 EAGFREHMSVQKKKSKQAWAGSGDKGLAGQFAALMGAGLESEFIGYDCLAATSRI----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V  +  +G+ VE   SG    +V  +TPFY E+GGQ+GDTG  
Sbjct: 475 -----------------VALLDAEGQPVERLRSG-VGFMVTLKTPFYGESGGQMGDTGRV 516

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                  ++ D  K A  + VH   +  G +  +  + L ++   R   + NHS THLLH
Sbjct: 517 QAPTGSARVLDTLKPAPALIVHKIEIGGGEILADQEVELFVEEGERIATARNHSTTHLLH 576

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + P  LRFD TH   ++  EL+ +ED VN  I  + P+VT++M
Sbjct: 577 AALRRVLGEHVKQAGSLVGPSRLRFDFTHISGLSPEELRQVEDEVNRAILADAPIVTQVM 636

Query: 655 NRE-DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + +       A AL G KY   VRVV +        S  LCGGTH++STG+     ++SE
Sbjct: 637 SYDAAVQQKQAMALFGEKYEADVRVVEMAG-----ESVELCGGTHLASTGQAGSFALLSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + I AG+RRIEA+TG  A  H   Q E+++++A+ LK +   +  ++  + ++ + L   
Sbjct: 692 AGIAAGVRRIEALTGWDALRHWQAQREEVRTVAATLKAAPHELGKKIIALQDQGKALAKE 751

Query: 774 HAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               + ++  E           I+ +  ++  +   D   L+++MD L+ K+ SGII L 
Sbjct: 752 LQTLQARVMSESGRDLASEAKDISGMKVLARKVDAPDMNALRNLMDDLRSKLSSGIIALA 811

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + KA +++ V++DL  R+ A  L +  +  + GG GGGRP +AQ+GG       +A
Sbjct: 812 A-EIDGKAMLVLAVSKDLHGRYTAPALIKEVSDEIKGG-GGGRPELAQAGGSEPEGISRA 869

Query: 889 IAGVASFLKK 898
           +A + +FL K
Sbjct: 870 LAKLEAFLSK 879


>gi|218885980|ref|YP_002435301.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756934|gb|ACL07833.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 879

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/907 (42%), Positives = 517/907 (57%), Gaps = 41/907 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLEFFQ  GHE++ SSSL+P +DP+L+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MITANEIRRRFLEFFQSQGHEIVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRGYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT++  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEDLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TV+ +D+EA  LW   + + A++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKERLYATVFRDDDEARDLWLAHTDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +RY+EIWNLVFMQ++Q     R  LPK SIDTGMGLER+A V Q
Sbjct: 181 EHMTCGPDCGIGKCDCDRYLEIWNLVFMQYDQAADGTRTALPKPSIDTGMGLERIAAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF+ +IQ +  + G+ Y  N+      RVI DH RS +F+I DGILP+NEG
Sbjct: 241 GVYSNFDTDLFQAIIQYTCGIAGVSYRANDETDTALRVIADHSRSMAFMITDGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RL+G T   +      +   MG  YPEL      +   +R E+E
Sbjct: 301 RGYVLRRLIRRAYRFGRLIGQTGTFLHKTALKVVEVMGDDYPELRGNADFMARVVREEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TLD+GL LL+  L  L       + GDVAFKLYDT+G PLDI+ DI   RG   +D
Sbjct: 361 RFNRTLDKGLALLEEELESLRGAGSTRVAGDVAFKLYDTYGFPLDIVNDIAEKRGFT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   + EQ+ RA+A   G G       + +L E+   ++FIGYD L G         
Sbjct: 420 EEGFRTLMAEQKERAKAAWKGSGESDIASRFHALLEEGLRSEFIGYDHLSGDSR------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                           +V  +   G   E    G K  +V  +TPFY  +GGQ GD G  
Sbjct: 474 ----------------VVALLDATGLPSEGLPKGAKGYLVATRTPFYGASGGQTGDPGSI 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                + ++ D  K +  + VH      G +  +  + L ++   R   + NH+ THLLH
Sbjct: 518 TSPSGKARVLDTLKPSPELTVHQIETVDGEILPDQEVHLQVEEDERVASARNHTCTHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + PD LRFD TH   +T  E+ ++E  VN +I  NLP+ T  M
Sbjct: 578 AALRRVLGDHVKQAGSLVAPDRLRFDFTHIAAMTPEEIAAVEREVNRVILANLPLETDHM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             + A+  GA AL G KY D VRVV++        S  LCGGTH+ +TG+  L  I+SE 
Sbjct: 638 AYDAALTRGAMALFGEKYGDEVRVVAIA-----DESVELCGGTHLRATGQAGLFLILSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEAITG  A   +M Q  +L  +A  LK   G +V RVE + ++ + L+   
Sbjct: 693 GVAAGVRRIEAITGWNALRMVMDQRAELGQVAGLLKARSGEIVPRVEALQKDVKSLRKDL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K   Q              +I  V  ++  +   + K L+ +MD ++ K+ SGI  L  
Sbjct: 753 EKASSQATSGQGRNIMDELAEINGVKVLAAKVEVPNVKALRDLMDDVRSKLPSGIACLAA 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + K S+++ V++DL DRF A  L +  A  +GG G GGRP MAQ+GG N    D+A 
Sbjct: 813 PDGD-KVSLIVAVSKDLHDRFTAPALIKAVAAAVGGSG-GGRPDMAQAGGTNPAGIDEAF 870

Query: 890 AGVASFL 896
             +   +
Sbjct: 871 DILRKTI 877


>gi|325128607|gb|EGC51476.1| alanyl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 874

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/912 (40%), Positives = 516/912 (56%), Gaps = 59/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTT-ELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 60  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+
Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 299 LPANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R  
Sbjct: 359 LKNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN- 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +        A      +  + K    L      T+F GY          
Sbjct: 416 IEPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE-------- 460

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 461 ---------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGD 505

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 506 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 566 HLMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I
Sbjct: 626 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + 
Sbjct: 681 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 740

Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A+ K +L V            +     ++  I    +  L+ ++  L  K +  I
Sbjct: 741 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSEQAI 799

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K
Sbjct: 800 VLLAAV-NEGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGK 857

Query: 885 ADQAIAGVASFL 896
               +  V  ++
Sbjct: 858 LPAVLDSVKDWV 869


>gi|325132719|gb|EGC55402.1| alanyl-tRNA synthetase [Neisseria meningitidis M6190]
          Length = 881

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/911 (40%), Positives = 519/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 8   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 68  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 188 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 248 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 306

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE L
Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEAL 366

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 367 KNEESRFAQTLETGMALLENALAK--GSKKLDGEIIFKLYDTYGFPYDLTADICRERN-I 423

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 424 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 468 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 514 GYIFSGENRFEVLDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 574 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 634 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 808 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 865

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 866 PAVLDSVKDWV 876


>gi|226940409|ref|YP_002795483.1| alanyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|226715336|gb|ACO74474.1| Sya [Laribacter hongkongensis HLHK9]
          Length = 877

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/914 (41%), Positives = 534/914 (58%), Gaps = 60/914 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L+FF   GH+++PSSSL+P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKASEIRQKYLDFFASKGHQIVPSSSLVPWEDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTDPKWLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L +TVY  D+EAF +W K  G+ A+KI+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPKEKLMVTVYASDDEAFDIWNKEIGVPAEKIVRIGDNKGAPYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGDHIWGGPPGSPDEDGDRFIEIWNNVFMQFNRTEDGVMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++LI+A+ + TG+     +  + +VI DH+R+ SFLIADG++
Sbjct: 241 RISAVLQGVHSNYEIDLFQNLIRAAARETGVP-FSMDEPSLKVIADHIRACSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N+GRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL   + LIE+ L
Sbjct: 300 PSNDGRGYVLRRIIRRAIRHGYKLGQKGLFFHRLVTDLVAEMGDAYPELRAKQALIEDEL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+ +F +TLD+G+ LL+  L      ++L+G  AF+LYDT+G PLD+  DI   R L 
Sbjct: 360 KKEEIKFAETLDKGMALLEEALKD--GVQVLDGKTAFQLYDTYGFPLDLTADICRERDL- 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+E QR+++RA S     G        L+     T+F GY           
Sbjct: 417 QVDQDGFDAAMEAQRAQSRAASTFKMGG-------KLEYAGDDTRFEGY----------- 458

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         +     + A+ + G+ V+   +G    VV D+TPFYAE GGQ+GDT
Sbjct: 459 ------------AESTAEGRILALYKDGQPVDTLSAGDSGVVVLDRTPFYAEGGGQIGDT 506

Query: 532 GCAIGDGI---RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G     G       + D QK     F H   + RG L+T M++V TID   RR +  NHS
Sbjct: 507 GTLAATGGLDALFDVLDTQKVTAAAFGHEGRLVRGQLKTGMTVVATIDLHRRRAIQRNHS 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THL+H AL  +LG HV+Q GS +T +  RFD +H +P+++ ++  IE  VN +I  N  
Sbjct: 567 VTHLMHAALRDVLGKHVTQKGSLVTAERTRFDFSHHEPVSAEQMAEIERIVNFVIGANYD 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  R+M+ +DA   GA AL G KY D VRV+ +     G  S+ LCGGTHVS TG+I   
Sbjct: 627 VSARLMSMDDAQKLGAMALFGEKYGDVVRVLKM-----GDFSTELCGGTHVSRTGDIGFF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSE  + AG+RRIEA+TG+ A +++  QD+ ++     LK      V  R+  + ++ 
Sbjct: 682 KIVSEGGVAAGVRRIEAVTGEGAVAYVQSQDKLVRDACHMLKAQSHEEVAERIAALQDQL 741

Query: 768 RKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L    A+ K +L          S   +     ++  +   D+  L+  MD L+ ++QS
Sbjct: 742 KGLDKEVARLKGKLAASAGEELAASAVTVNGARLLAAELEGADAATLRDTMDKLKDRLQS 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L     + K  +   VT+DL  +  A +L    A  +GG G GG+P +A +GG   
Sbjct: 802 AVIVLAS-KADGKVQLAAGVTKDLTGKVKAGELVNFVAGQVGGKG-GGKPDIAMAGGSEP 859

Query: 883 NKADQAIAGVASFL 896
            K  +A+A V  ++
Sbjct: 860 EKLAEALASVQGWV 873


>gi|163731786|ref|ZP_02139233.1| alanyl-tRNA synthetase [Roseobacter litoralis Och 149]
 gi|161395240|gb|EDQ19562.1| alanyl-tRNA synthetase [Roseobacter litoralis Och 149]
          Length = 885

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/895 (47%), Positives = 567/895 (63%), Gaps = 41/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 1   MQTLNDIRSTFLSYFEKQGHSVVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRAYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T++  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWNLVTRDLGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY  DEEA  +WKK  G+  D+II I TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLYVTVYHTDEEAAAIWKK-VGVPEDRIIPIATNDNFWMMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ     R  L   SIDTGMG+ER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTRRDLTAQSIDTGMGIERVAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   +    +G    +HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 TNDNYATDLMRSLIEASADASNTDPDGPCKTHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG+AYPEL QA+ +I +TL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMHQLVPALVQQMGAAYPELGQAQSMITQTLLQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  L+ L   + L G  AFKLYDT+G PLD+ QD L  +G  G+D   F+
Sbjct: 360 QTLERGLKLLDDELNALPDGDDLPGAAAFKLYDTYGFPLDLTQDALREKGR-GVDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+++ARA   G G      +WF + +  G T F+GYD                  
Sbjct: 419 AAMAAQKAKARAAWSGTGEAADATVWFDVADAEGTTDFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+VQ G   + A +G+ V++  +QTPFYAE+GGQ+GD+G       
Sbjct: 461 -----TEVAEGQIVALVQDGAATDTATTGETVQIALNQTPFYAESGGQVGDSGVIKTAKG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +TD +K A+ +FVH A V  G++    +  L +D   R  +  NHSATHLLH AL  
Sbjct: 516 TATVTDCRKTAD-VFVHTAKVTEGVISVGEAAQLAVDPARRTAIRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H++ ++S EL  +E +VN  I QN PV TRIM  + A
Sbjct: 575 ALGDHVAQRGSLNAEDRLRFDFSHTQALSSEELARVEADVNTYIRQNAPVETRIMTPDAA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+          +G  +S  LCGGTHV  TG+I     + 
Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRKEGSAKGLNGDTYSLELCGGTHVRQTGDIGAFVALG 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TG  A +HL  QD++L  +AS LK    +V  RV  + +E R L  
Sbjct: 695 DSASSAGVRRIEALTGAAALAHLRAQDQRLAEVASDLKAQAADVPERVRSLLDERRALSN 754

Query: 773 IHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             A+ + +L +   S         +A    ++ ++S V  K+L  ++D +++++ SG+++
Sbjct: 755 EVAQLRRELAMSGGSGSAAPDVKDVAGTPLLAQVLSGVTGKDLPGLVDQMKEQMGSGVVL 814

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L+    + KA+V   VT+DL ++ +AVDL + +   LGG GGGGRP MAQ G  +
Sbjct: 815 LIA-DADGKAAVAAGVTKDLTEKVSAVDLVKAAVSALGGKGGGGRPDMAQGGAKD 868


>gi|162147971|ref|YP_001602432.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542589|ref|YP_002274818.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786548|emb|CAP56130.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530266|gb|ACI50203.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 881

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/889 (47%), Positives = 579/889 (65%), Gaps = 31/889 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS  + IR  FL++F  NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE   Y  
Sbjct: 1   MSTTNDIRAAFLDYFAANGHQIVPSSSLVPRNDPTLLFTNAGMVQFKNVFTGQETRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI+ AW L+T+ F L
Sbjct: 61  ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKADAIEFAWTLITRNFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + RL  TVY +DEEA  LW+K++GL  ++IIRI T DNFW M +TGPCGPCSEIFFD  
Sbjct: 121 PRDRLLATVYADDEEAADLWRKVAGLPDERIIRIGTADNFWRMGDTGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +   G      E+G+R++EIWNLVFMQF +     R  LP+ SIDTGMGLER A ++Q 
Sbjct: 181 PDVPGGPPGSPDEDGDRFVEIWNLVFMQFFEDPPGVRSPLPRPSIDTGMGLERFAAIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS + TG   +G    +HRV+ DHLRS+SFLIADG+LP+ +GRGY
Sbjct: 241 KRDNYDTDTMRALILASAEATGQDPDGPFRASHRVVADHLRSTSFLIADGVLPSKDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  ++G  E +   L+PAL  +MG+AYPEL+QA+ LI ET+R E+ERF 
Sbjct: 301 VLRRIMRRAMRHLHMMGTRETVFHRLVPALVRQMGAAYPELVQAEALIRETMRGEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL LL    + LG  + L GDVAFKLYDT G PLD+ QD L       +D+  F+
Sbjct: 361 AMLDRGLALLADETARLGDGQPLPGDVAFKLYDTFGFPLDLTQDALRGSSH-DVDVTGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ QR RARA   G G   TE +WF  ++++GA++F+GY                   
Sbjct: 420 RAMQVQRERARAAWSGSGDSATETVWFEARDRFGASEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + ++AIV  G  V EA +G ++ ++ +QTPFY E+GGQ+GDTG     G+
Sbjct: 461 ----ATEQADAEIQAIVTDGRSVTEAPAGTEIALLLNQTPFYGESGGQVGDTGLITAPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+ +TD QK+   + VH+  V  G +R   ++  T+D+  R  +  +HSATHLLH AL  
Sbjct: 517 RIAVTDTQKRLGDLMVHYGTVVEGTVRVGQAVTATVDHDRRSAIRAHHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS   PD LRFD++  +P+T  E+  +E  VN  I +N PVVTR M++E+A
Sbjct: 577 RLGAHVTQKGSLNAPDRLRFDISQPRPLTPEEIADVEAEVNARIRENSPVVTRPMSQEEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A GA AL G KY D VRVV +    +D    S  LCGGTHV+ TG+I L  I SE+ + 
Sbjct: 637 VAQGAMALFGEKYGDEVRVVFMGAPEDDRPAWSIELCGGTHVNRTGDIGLFRITSEAGVS 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+TG+ A    +  +++L  +A+ L+VS      R+  I +E + ++   +  
Sbjct: 697 AGIRRIEAVTGKSAEQAAVATEQRLGQMAAMLRVSAAEAPERLAVILDERKVMERQISDL 756

Query: 778 KLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + +L     +      I  + F++  + ++ ++ELK + D+L++++ SG++ LV  + E 
Sbjct: 757 QRKLASGGSDGAQAETINGIGFVARDVGDLPARELKPLADSLRQQVGSGVVALVSTA-EG 815

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           K SV++ VT DL DR +AV+L RL++  +GG GGGGR  MAQ+GGP+  
Sbjct: 816 KGSVVVAVTSDLTDRLDAVELVRLASAAMGGKGGGGRRDMAQAGGPDIA 864


>gi|225075679|ref|ZP_03718878.1| hypothetical protein NEIFLAOT_00695 [Neisseria flavescens
           NRL30031/H210]
 gi|224952950|gb|EEG34159.1| hypothetical protein NEIFLAOT_00695 [Neisseria flavescens
           NRL30031/H210]
          Length = 874

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/912 (40%), Positives = 517/912 (56%), Gaps = 59/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTT-ELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 60  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+
Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 299 LPANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R  
Sbjct: 359 LKNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN- 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   FN+ +        A      +  + K    L      T+F GY          
Sbjct: 416 IDLDEEGFNREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE-------- 460

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 461 ---------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGD 505

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 506 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 566 HLMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVN 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I
Sbjct: 626 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + 
Sbjct: 681 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 740

Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A+ K +L V            +     ++  I    +  L+ ++  L  K +  I
Sbjct: 741 LEKELARAKAELAVHAGAKLLDDAKDLGSAKLVAAQIEAD-AAALREIVTDLTGKSEQAI 799

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K
Sbjct: 800 VLLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDVEK 857

Query: 885 ADQAIAGVASFL 896
               I  V  ++
Sbjct: 858 LPAMIESVKDWV 869


>gi|86138306|ref|ZP_01056880.1| alanyl-tRNA synthetase [Roseobacter sp. MED193]
 gi|85824831|gb|EAQ45032.1| alanyl-tRNA synthetase [Roseobacter sp. MED193]
          Length = 883

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/896 (49%), Positives = 577/896 (64%), Gaps = 39/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E   YQ 
Sbjct: 1   MATLNDIRSTFLNYFAKQGHEIVDSSPLVPRNDPTLMFVNSGMVQFKNLFTGVETRDYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF +WKK+ G+  D+IIRI T DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRLLTTVYHTDDEAFAIWKKL-GVPEDRIIRIDTADNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEKFEDGSMTPLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS  VT     G+  V+HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKSLIEASADVTSSDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL QA+ +IEETL+ E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGQAQSMIEETLKLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  +S L +   L G  AFKLYDT G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLERGLKLLDDEVSGLDEGAPLPGSAAFKLYDTFGFPLDLTQDALREKGRE-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      +WF + +K+GAT F+GY+                  
Sbjct: 419 SAMAEQKAKARAAWAGSGEAADSTVWFDIADKHGATDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G  V EA  G KV++V +QTPFYAE+GGQ+GD+G    DG 
Sbjct: 461 -----TEIAEGQVVALVKDGGEVSEAGLGDKVQLVLNQTPFYAESGGQVGDSGEIRVDGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +Q++D  KK+ G+F+H   V  G++       L +D   R  +  NHSATHLLH AL  
Sbjct: 516 LVQVSDT-KKSAGVFIHIGQVVEGLVTAGAPAQLVVDPTRRSAIRANHSATHLLHEALLE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K ++ AEL  +  +VN  I QN PV TRIM  +DA
Sbjct: 575 ALGEHVAQRGSLNADDRLRFDFSHTKALSDAELCQVSADVNAFIRQNTPVETRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+   D G       +S  LCGGTHV  TG+I    I+ +
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGKADTGKGQSGDTYSIELCGGTHVRQTGDIGTFVILGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A  HL     ++  +A  LK   G+V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAAAFEHLQRTAGQMAEIAGTLKAQPGDVMDRLKSMMDERKALQNE 754

Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  K QL +       +   +I    F++  +  V  K+L++++DA ++ I SG+I+L+
Sbjct: 755 ISTLKQQLAMGGGAGGGVEAKEIGGKKFLAQALEGVSGKDLRALIDAHKQSIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
              +  K +V   VT+DL+   +AVD+ R +   +GG GGGGRP MAQ GG + + 
Sbjct: 815 A-EEGGKVAVAAGVTDDLIGDVSAVDVLRAAVPAVGGKGGGGRPDMAQGGGKDFDG 869


>gi|90408728|ref|ZP_01216876.1| alanyl-tRNA synthetase [Psychromonas sp. CNPT3]
 gi|90310179|gb|EAS38316.1| alanyl-tRNA synthetase [Psychromonas sp. CNPT3]
          Length = 869

 Score =  871 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/886 (41%), Positives = 522/886 (58%), Gaps = 46/886 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G E+  Y   
Sbjct: 5   KSTSEIRQGFLDFFANKGHQVVSSSSLVPANDPTLLFTNAGMNQFKDTFLGSEQRSYVRA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E  L 
Sbjct: 65  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWEYLTVELGLP 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+ITVYD+D EA K+W +  G+    + RI   DNFWSM +TGPCGPC+EIF+D GE
Sbjct: 125 KEKLWITVYDKDPEAEKIWIEEIGVDPACLSRIGAKDNFWSMGDTGPCGPCTEIFYDHGE 184

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG P    E+G+RYIEIWNLVFMQ+ +        LPK S+DTGMGLER++ +LQ  
Sbjct: 185 HIWGGPPGTPEEDGDRYIEIWNLVFMQYNRHADGTMVDLPKPSVDTGMGLERISAILQNC 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI+   +VTG         + RV+ DH+RS  FLI DG++P+NEGRGYV
Sbjct: 245 HSNYEIDLFQALIKKVAEVTGATD--LEDKSLRVVADHIRSCGFLICDGVMPSNEGRGYV 302

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        +   L  +MG  YPEL + +  +E+ LR E+E+F K
Sbjct: 303 LRRIIRRAVRHGNKLGAQGVFFFKIYGELILQMGDTYPELGKQRDFVEKILRLEEEQFAK 362

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL RGL +LD  L  L    +++G+  FKLYDT+G P D+  DI   R L  IDI  FN 
Sbjct: 363 TLVRGLQILDNALESLE-GNVISGETVFKLYDTYGFPADLTADIARERDLI-IDIDGFNT 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++EQR+RA+              +    +    TQF+GY+ L+                
Sbjct: 421 LMDEQRTRAKK------VDHFGTDYNDGLKFDEKTQFLGYEHLQH--------------- 459

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S+ V  +V++GE+V     G+   V+  QTPFYAE+GGQ+GD+G  +     
Sbjct: 460 --------SATVSILVKEGELVPALNQGEHGHVILKQTPFYAESGGQVGDSGRLVLKDGI 511

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +TD +K  +  F+H   VE G +     ++  +D + R+ ++++HSATHLLH AL   
Sbjct: 512 FNVTDTKKSGDT-FLHIGYVESGNISVHDEIIAEVDSERRKAIALHHSATHLLHAALRQT 570

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS    D LRFD +H + ++S  L+ +   VN  I  N+ V+T++ + E+A 
Sbjct: 571 LGEHVTQKGSLCDADKLRFDFSHFEGLSSQVLEQVNYLVNSAIRDNVSVLTKLSDIEEAK 630

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY++ VRVVS+     G  S+ LCGGTH S TG + L +I SES I AG+
Sbjct: 631 TAGAMALFGEKYDEMVRVVSM-----GALSTELCGGTHTSRTGNMGLFFIRSESGIAAGV 685

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA  G+ A   L     +       +K    ++  ++ +  E  R L+      K++
Sbjct: 686 RRIEACVGKAAELALHDVMSQFTKSCELVKGDASSLSDKILQTLERNRALEKELHTLKIK 745

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +          +   I  V  +   +  +D K L+  +DA++ K+QSGI++L     + K
Sbjct: 746 MAASAGSDLVANAIIINGVKVVIADLPGIDPKSLRDSVDAMKNKMQSGIVVLGTAVADDK 805

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            S+++ VT+DL  +  A +L  + A  + GG GGGRP MA +GG +
Sbjct: 806 VSLIVGVTKDLTKKVKAGELVNVVAAPV-GGKGGGRPDMAMAGGND 850


>gi|320354759|ref|YP_004196098.1| alanyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
 gi|320123261|gb|ADW18807.1| alanyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
          Length = 882

 Score =  871 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/909 (42%), Positives = 537/909 (59%), Gaps = 45/909 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FLEFF+  GH  + +SSL+P +DPTL+FTNSGMV FK +F G+E   Y   
Sbjct: 1   MTGNEIRACFLEFFESKGHTRVAASSLVPHDDPTLLFTNSGMVQFKKVFMGEETRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q  VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK+  LD
Sbjct: 61  TTAQSSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIAYAWEFLTKKLGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+++VY++D+EA++LW++I  L   +I+R+   DNFW+M +TGPCGPCSEI  DQG 
Sbjct: 121 PNKLWVSVYNDDDEAYRLWERIEDLPKGRIVRMGEKDNFWAMGDTGPCGPCSEIHIDQGA 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P      + +R++E+WNLVFMQF +        LPK SIDTGMGLER+A VLQ 
Sbjct: 181 EVGCGRPDCALGCDCDRFLELWNLVFMQFYRDEHGTMTPLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K NN+D DLF  +I     + G KY  N  + V+ RVI DH R+++FL+ADG+LP+NEGR
Sbjct: 241 KFNNFDCDLFTPIIDHVAALAGKKYHENRADDVSMRVIADHARATTFLVADGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA+ Y R LG +      +   +   M  AYP L   + L+ + + +E++R
Sbjct: 301 GYVLRRIMRRAIRYGRALGLS-SFFPGVCALVTELMVHAYPHLGDTRELLAKVVTNEEQR 359

Query: 358 FGKTLDRGLVLLDGVLSHLG----KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           FG+TLD GL  L+  +  L     +  +++GD  FKLYDT+G P+DI++DI   +G    
Sbjct: 360 FGETLDHGLNKLEQEIRRLKKAEGERAVIHGDFIFKLYDTYGFPVDIVRDIAIEKG-IAF 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+E+QR ++R    G      E     L  +    +FIGY             
Sbjct: 419 DEPGFAQAMEQQREQSRKSWKGSDVDHLEAGIIELGSRGLKAEFIGY------------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       + V  IV A    G++V EA +G+ + +   QTPFYAE+GGQ+GD G 
Sbjct: 466 ------ATTHGVSTVEGIVNA---SGQLVHEAKAGETLRLFCAQTPFYAESGGQIGDQGE 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  R  ++      EG+ +H   + +G L T   + L +    R   ++NH+ATHLL
Sbjct: 517 ITWEDGRFVVSKTLAPVEGLILHEGQIAQGTLTTGTRVELQVA-DRRTDTALNHTATHLL 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             A+  +LG HV Q GS +  + LRFD TH  P+T  E+ +IE  VN  I +N PV T +
Sbjct: 576 QAAMKKVLGDHVKQAGSAVDHNRLRFDFTHFSPLTHGEICTIEQLVNAQIRRNTPVDTTL 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + RE AIA GA AL G KY + VRVV +     G  S  LCGGTH   TG+I L  IV E
Sbjct: 636 LGREQAIAEGATALFGEKYGEEVRVVRI-----GDFSKELCGGTHARMTGDIGLFKIVME 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + I AG+RRIEA+TG  A   +     +  ++++ L       V +++ + + +++L+  
Sbjct: 691 TGIAAGVRRIEAVTGAGAIHWVQELARQANAISAVLSGPLDGAVDKIQGLLKRHKELEKQ 750

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A     + + DL     S  ++  +  ++  +     K L+ + D ++ ++QSGII+L 
Sbjct: 751 IAALNASMALSDLDQLLASSIELDGMRVVASRVPLDSPKTLREIGDKIRDRMQSGIIVLG 810

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G   E KA++L +V++DL  R  A DL   +A V+ GG GGGRP MAQ+GGP  +K D+A
Sbjct: 811 G-EFEGKAALLAMVSKDLTGRIKAGDLVNRAA-VIVGGKGGGRPDMAQAGGPMPDKLDEA 868

Query: 889 IAGVASFLK 897
           I  VAS +K
Sbjct: 869 INSVASIIK 877


>gi|329890683|ref|ZP_08269026.1| alanyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
 gi|328845984|gb|EGF95548.1| alanyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
          Length = 881

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/905 (46%), Positives = 577/905 (63%), Gaps = 33/905 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++  IR+TFL++F  +GHE + S+ L+P NDPTL+F N+GMVPFK+ FTG   P Y+ 
Sbjct: 1   MTSLKQIRSTFLDYFAADGHEKVQSAPLVPQNDPTLLFVNAGMVPFKDYFTGAAVPPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLTKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIESAWGLLTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TVY  D++AF +WKK++G + +KIIRI TNDNFW+M ++GPCGPC+EIF+D G
Sbjct: 121 DPARLLVTVYHTDDQAFDIWKKVTGFADEKIIRIPTNDNFWAMGDSGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG P    E+G+R++EIWN VFMQFE++N +    LPK S+DTGMGLER+A VLQ 
Sbjct: 181 DHIFGGPPGSPDEDGDRFVEIWNNVFMQFEKENDEIVRELPKKSVDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD+DLFK LI ASE++T  K EG    +HRVI DHLRS++FLIADG+ P+NEGRGY
Sbjct: 241 VHSNYDVDLFKSLINASEELTSTKAEGERAPSHRVIADHLRSTAFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  EMG AYPEL +A+  IE+TL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVQEMGEAYPELGRAQAFIEDTLKQEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ L D   +     ++L+G  AF LYDT+G PLD+ QD    RG + +++  F 
Sbjct: 361 TTLGRGMNLFDQATTGFKAGDMLDGQTAFTLYDTYGFPLDLTQDEARRRGFS-VNVDGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR R+R H  G G   +   W +L++++G T+F GY+                  
Sbjct: 420 SAMAEQRDRSREHWKGSGQTASAGAWLALRDQHGGTEFTGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                +      V AIV+ G     A +G+ VEV+ D+TPFY E GGQ GD G  +  G 
Sbjct: 462 -----SETGEGKVLAIVKDGAEAASAATGETVEVLLDKTPFYGEGGGQAGDKGAFVWSGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D +K    + VH   V +G L     +  T++  +R     NHSA HL H A+  
Sbjct: 517 EGRVLDTKKHGGDLHVHTLEVTKGALAAGAVVTATVEEGSRPTTRANHSAAHLFHAAVKN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q G  +  + +RFD +H+ P+T  E+  +ED VN +I QN+PV T +M  + A
Sbjct: 577 VLGAHVAQKGQMVDAERMRFDFSHNAPMTDEEIARVEDEVNAVIRQNVPVTTELMTPDAA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           IA+GA AL G KY D VRV+++     G   +S  LCGGTHV  TG+I L  IVSE  + 
Sbjct: 637 IAAGAVALFGEKYGDEVRVLTIGRALSGPGAYSVELCGGTHVFRTGDIALFKIVSEGGVA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RR+EA+TG+ AR  L+ Q    +SLA   K+    V  RVE +    + L+   A  
Sbjct: 697 AGVRRVEALTGEAARRFLLDQANVARSLAQGFKIQTAEVPARVEGLQASVKTLEKQVADL 756

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +   +       +I  +  M+ ++  VD K L+ V +  +K+I SG++ LVG+  
Sbjct: 757 KKQLALGGGAGANAAPEEIGGIKLMARVLDGVDGKGLRGVAEDFKKQIGSGVVALVGVV- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA++ +  T D+  + NA DLAR +   +GG G GG+P  AQ G P+G+KA+  +  +
Sbjct: 816 DGKAAITVAATPDMAGKVNAADLARDAVIAMGGKGAGGKPDFAQGGAPDGSKAEDGLNAI 875

Query: 893 ASFLK 897
            + LK
Sbjct: 876 RAALK 880


>gi|205830264|sp|A9M198|SYA_NEIM0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/911 (40%), Positives = 520/911 (57%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY + VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELAKAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858

Query: 886 DQAIAGVASFL 896
            + +  V S+L
Sbjct: 859 PEMLVSVESWL 869


>gi|254673270|emb|CBA08330.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha275]
          Length = 885

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/911 (40%), Positives = 521/911 (57%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 12  MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 72  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 191

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 310

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE L
Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEAL 370

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 427

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 428 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 472 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 517

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 518 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 578 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFL 896
            + +  V S+L
Sbjct: 870 PEMLVSVESWL 880


>gi|304413367|ref|ZP_07394840.1| Alanyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304284210|gb|EFL92603.1| Alanyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 893

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/916 (41%), Positives = 553/916 (60%), Gaps = 60/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH ++ SSSL+P NDPTL+FTN+GM  FKN+F G E+      
Sbjct: 13  KSTAEIRQMFLDFFDSKGHRIVASSSLVPHNDPTLLFTNAGMNQFKNVFLGLEQSDSVRA 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 73  TSSQRCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIHFAWELLTSEQWFH 132

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L+ITVY  DEE +++W    G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 133 LPKDKLWITVYQTDEETYRIWADEVGIPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 192

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ + GG PGS  EEG+RYIEIWN+VFMQF +Q       LP+ S+DTGMGLE
Sbjct: 193 TEIFYDHGDHLWGGPPGSPEEEGDRYIEIWNIVFMQFNRQLDGTMLALPQPSVDTGMGLE 252

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ+  +NY+IDLF+ LI+A  ++T +     +  + RVI DH+RS +FLIADG++
Sbjct: 253 RIAAVLQQVNSNYEIDLFRDLIKAIAEITAVSD--LSNQSLRVIADHIRSCAFLIADGVM 310

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG        L+  L + MGSA   L Q + LIE+ L
Sbjct: 311 PSNENRGYVLRRIIRRAIRHGHMLGIKRVFFYKLVAPLISVMGSAAEALKQQQSLIEQWL 370

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS +   + L G+ AF LYDT+G PLD+  D+   R L 
Sbjct: 371 KTEEEQFTRTLERGLALLDEELSKIT-GDTLAGETAFSLYDTYGFPLDLTADVCRERHLK 429

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+  QR RAR       S      + +L +  G ++F GY+          
Sbjct: 430 -VDEAGFERAMAAQRLRAR------DSNVFATDYNNLIKVEGKSEFSGYEH--------- 473

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE------AVSGQKVEVVFDQTPFYAEAG 525
                             +++ A++  G+ V+E      A   +++ V+ D+TPFYAE+G
Sbjct: 474 ------------QHLQQQALIIALIHNGKAVDEIHFSDKAAPDEEILVILDKTPFYAESG 521

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD+G  + D     + D QK       H   +  G LR   S+   +D + R ++ +
Sbjct: 522 GQVGDSGKLVNDSAHFTVRDTQKHGAT-IAHVGQLTTGCLRIGESINAAVDAERRHRIRL 580

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL   LG HV+Q GS +    LRFD +HS+ +T A+++ +E+ VN  I  
Sbjct: 581 NHSATHLLHAALRQTLGQHVAQKGSLVNDHYLRFDFSHSQAMTKAQIQQVENQVNAEIRA 640

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NLP+ T+IM  E+A  +GA A  G KY+D+VRV+++     G  S  LCGGTH + TG+I
Sbjct: 641 NLPIETKIMALEEAKKTGAMAFFGEKYSDKVRVLTI-----GTFSIELCGGTHTNRTGDI 695

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  I +ES+  AGIRRIEA+TG+ A + L  +   L  ++  LK    N++ ++ +I E
Sbjct: 696 GLFRITAESATAAGIRRIEAVTGEAAMTLLHQESHLLHKISYQLKGDSSNLLDKISKIQE 755

Query: 766 EYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             + L+    + K Q   +       S  +I     +   +  +  + LK+++D+L++++
Sbjct: 756 HNKNLEQELQQLKAQQAKQKSISLSDSAQQIKGGKLLVKQVDNIAPEMLKTLIDSLKQEL 815

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S II+L    ++ K +V++ VT++L D+  A +L    AK + GG GGGR  MA  GG 
Sbjct: 816 KSAIIVLA-TKQDNKVNVIVGVTKNLTDKIKAGELVADLAKQV-GGKGGGRAEMAMGGGT 873

Query: 881 NGNKADQAIAGVASFL 896
           N      A+A V +++
Sbjct: 874 NVATLPAALASVRAWV 889


>gi|89054478|ref|YP_509929.1| alanyl-tRNA synthetase [Jannaschia sp. CCS1]
 gi|122498736|sp|Q28QV8|SYA_JANSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88864027|gb|ABD54904.1| alanyl-tRNA synthetase [Jannaschia sp. CCS1]
          Length = 884

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/893 (48%), Positives = 580/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL++F + GH ++PSS L+P NDPTLMF NSGMV FKN+FTG EK  Y  
Sbjct: 1   MTSLNDIRSTFLDYFGRQGHAVVPSSPLVPRNDPTLMFVNSGMVQFKNLFTGVEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+TK+F L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRYAWELITKDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY  D+EAF++WKK  G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKARLYVTVYHTDDEAFEIWKK-VGVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS+ E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 EHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFADGTMVPLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D  + L++AS   +    +G+  V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 SHDNYDTDTMRALMEASAHASSTDLDGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL ++MG AY EL QA+ LI ETL+ E+ERF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMYRLVPALVSQMGQAYSELGQAQALITETLKLEEERFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  ++ L +D  L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDEVAKLPEDGNLPGAAAFKLYDTYGFPLDLTQDALREQGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + EK G T+F+GYD                  
Sbjct: 419 AAMAEQKAKARAAWSGSGDAADATIWFDIAEKNGVTEFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V  G  V++  S Q V  V +QTPFYAE+GGQ+GD+G    +  
Sbjct: 461 -----TEVAEGQVLALVVDGARVDKVASNQDVIFVTNQTPFYAESGGQVGDSGTIRTETG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L +T+  +K  G+F+H   V  G ++      L++D++ RR +  NHSATHLL+ AL  
Sbjct: 516 VLHVTET-RKVAGVFLHVGQVTEGTIKVGQGASLSVDHERRRYICANHSATHLLNEALRW 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            +G  V Q GS  + D LRFD +H+KP+T+ EL  +E  VND+I +N  V TR+M  +DA
Sbjct: 575 AIGDSVVQRGSLNSRDRLRFDFSHNKPMTADELAQVEAEVNDLITRNTAVETRVMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+ +        D   +S  LCGGTHV  TG+I    I+S
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGHHAGSGKGLDKDTYSIELCGGTHVKRTGDIGPFVILS 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES+  AG+RRIEA+T Q A  +L  Q+E++  LA+ L     +V+ RV+ + ++ +KL+ 
Sbjct: 695 ESASAAGVRRIEALTNQTASFYLSEQNERMGQLAAELNTQAADVLDRVKALKDDRKKLEN 754

Query: 773 IHAKRKLQLNVE----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A+ + +L +           +  VNF +  +S V  K+L  ++D  + ++ SG ++L+
Sbjct: 755 EVAQLRRELAMAGGTSAPEAASVNGVNFHAQALSGVTGKDLAGIVDEHKARLGSGAVLLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  K A     VTEDL DR +AVDL R +   LGG GGGGRP  AQ GG +
Sbjct: 815 ADAGGKAAV-AAGVTEDLTDRLSAVDLVRAAVAELGGKGGGGRPDFAQGGGKD 866


>gi|218768564|ref|YP_002343076.1| alanyl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|20532265|sp|Q9JTG4|SYA_NEIMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|121052572|emb|CAM08912.1| alanyl-tRNA synthetase [Neisseria meningitidis Z2491]
          Length = 874

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/911 (40%), Positives = 520/911 (57%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY + VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858

Query: 886 DQAIAGVASFL 896
            + +  V S+L
Sbjct: 859 PEMLVSVESWL 869


>gi|114767542|ref|ZP_01446296.1| alanyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601]
 gi|114540395|gb|EAU43481.1| alanyl-tRNA synthetase [Roseovarius sp. HTCC2601]
          Length = 891

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/902 (46%), Positives = 564/902 (62%), Gaps = 45/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F+K GH+++PSS L+P NDPTLMFTNSGMV FKN+FTG E   Y+ 
Sbjct: 1   MPSLNDIRSTFLGYFEKQGHQVVPSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK+ AI  AW+L+T+E D+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKKEAIPFAWELVTRELDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +T+Y  D+EA ++WKK +G+  D+IIRI T DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PAERLLVTIYHTDDEAAEIWKK-TGVPDDRIIRIDTTDNFWMMGPTGPCGPCTEIFFDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +   GG PGS  E+G+R++EIWNLVFMQ EQ        L   SIDTGMG+ER+A +LQ 
Sbjct: 180 DKYWGGPPGSPEEDGDRFVEIWNLVFMQNEQFEDGSMRALDMQSIDTGMGIERVAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 TNDNYSTDLIRALIEASADATSSDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVRQMGQAYPELVRAQPLIEETLKLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  LG+   L G  AFKLYDT+G PLD+ QD L  RG   +D   F+
Sbjct: 360 QTLDRGLKLLDDELVGLGEGAKLPGQAAFKLYDTYGFPLDLTQDALRERGRE-VDTGGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ+++ARA   G G      IWF + +  GAT F+GYD                  
Sbjct: 419 EAMAEQKAKARAAWSGSGEAADLAIWFEIADANGATDFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V+ G  VE   +G+   VV +QTPFY E+GGQ+GD+G       
Sbjct: 461 -----TETAEGQMLALVKDGAEVEALEAGESGWVVMNQTPFYGESGGQVGDSGWMRRLED 515

Query: 540 RLQITDVQKKAEG----IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
              + +V    +     +F H   +++G      ++ L +D+  R ++  NHSATHLLH 
Sbjct: 516 EHDLAEVTDTQKMGGGKVFAHQVTIKQGRFAKGEAVALEVDHARRGKIRANHSATHLLHE 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS   P+ LRFD +H+K +T  E+  +E  VN  I QN  V TRIM 
Sbjct: 576 ALRRALGDHVAQRGSLNAPERLRFDFSHAKALTPEEISRVEREVNAFIRQNSAVNTRIMT 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLL 708
            +DA A GA AL G KY D VRVVS+          DG  +S  LCGGTHV+ TG+I   
Sbjct: 636 PDDARALGAQALFGEKYGDEVRVVSMGTEAGSGKGGDGQTYSIELCGGTHVAQTGDIGTF 695

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            + SE++  AG+RRIEA+TG+ A + L G+D+ L  +   LK      V RV  + +E R
Sbjct: 696 ALTSETASAAGVRRIEALTGEAAMAELRGRDKALGEIEGLLKAHGAEAVSRVGALLDERR 755

Query: 769 KLQLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           KL+   A+ +  L               ++  V+F++ ++S V  K+L  ++D  + ++ 
Sbjct: 756 KLENEVAQLRRDLAMAGGAGQGGGAEAREVGGVSFVAQVLSGVSGKDLPPLIDEHKARLG 815

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SG ++L+      K +V   VTEDL    +AVDL + + + LGG GGGGRP MAQ G  +
Sbjct: 816 SGAVLLIA-DTGGKVAVAAGVTEDLTGSHSAVDLVKAAVEALGGKGGGGRPDMAQGGAKD 874

Query: 882 GN 883
            +
Sbjct: 875 AS 876


>gi|161870450|ref|YP_001599622.1| alanyl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|161596003|gb|ABX73663.1| alanyl-tRNA synthetase [Neisseria meningitidis 053442]
          Length = 885

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/911 (40%), Positives = 520/911 (57%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 12  MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 72  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPC 191

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +VI DH+RS SFLIADG+L
Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 310

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 370

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 427

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 428 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 472 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 517

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 518 GYIFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 578 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY + VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 753 EKELAKAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFL 896
            + +  V S+L
Sbjct: 870 PEMLVSVESWL 880


>gi|115375322|ref|ZP_01462586.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115367695|gb|EAU66666.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 922

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/919 (40%), Positives = 534/919 (58%), Gaps = 56/919 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL+FF+  GH  + SS L+P NDPTL+FTN+GMV FK++FTG+EK  Y   T
Sbjct: 31  TASQIREAFLQFFEARGHRRVASSPLVPQNDPTLLFTNAGMVQFKDVFTGREKRDYSRAT 90

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L  
Sbjct: 91  TSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAYAWEFVTRTLGLPI 150

Query: 123 RRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL +TV++       D EAF+LW +  G+  D+I+++   DNFW+M +TGPCGPCSEI 
Sbjct: 151 ERLAVTVFNGEQGVPWDAEAFELWAQQ-GVPRDRILKLGYKDNFWAMGDTGPCGPCSEIH 209

Query: 177 FDQGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQQNKQ-ERFILPKMSIDTGM 228
           + QG+ IP           G + + +R++EIWNLVFMQFE++ K      LPK SIDTG 
Sbjct: 210 YHQGDDIPCSEAAAGRPCQGVACDCDRWLEIWNLVFMQFERKEKDAPLIPLPKPSIDTGA 269

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A+V+Q K +NYD DLF+ ++    ++ G  Y      + RVI DH R+++FLI+D
Sbjct: 270 GLERIASVVQGKRSNYDTDLFQGILGTVSELVGKPYTQEGGASMRVIADHSRAAAFLISD 329

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRRIMRRA+ +  LLG  +     ++  +   M  AYPEL + +  + 
Sbjct: 330 GVQPSNEGRGYVLRRIMRRAIRHGSLLGLEDVFFFKVVDRVIGLMSDAYPELREGRTFVL 389

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E  R E+E F +TLDRG+ L+D  ++ L +  +  L+G   F L+ T+G P D+ Q IL 
Sbjct: 390 EVCRHEEETFRRTLDRGMKLIDEGIAKLKQAGETKLSGAEVFYLHGTYGFPWDLTQIILR 449

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG    D+  F + +E  +   +    G G      ++ +L E+ G ++F+        
Sbjct: 450 ERGFDA-DLDGFWKEME--KEADKNKFGGSGEKAISTVYQTLAERLGTSEFL-------- 498

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                              +     V+AI++ G  V +A +G+ VE+V D+TPFY E+GG
Sbjct: 499 -------------GYEGEGHEGEGSVRAILKDGHEVGQASAGETVELVLDRTPFYGESGG 545

Query: 527 QLGDTGCAIGDGIRLQIT--DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q GDTG   G G +      DVQ+   G+ VHH  V+ G  +T   +   +D Q R+ + 
Sbjct: 546 QQGDTGQITGHGGKAVAQVTDVQRPVPGLIVHHVQVKEGTFQTGEMVQAGVDNQRRKSIR 605

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV Q GS + PD LRFD +H    T  +L+ +ED VN  + 
Sbjct: 606 ANHSATHLLHKALKMVLGDHVKQAGSVVAPDFLRFDFSHFSVPTPEQLEQVEDIVNTWVR 665

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N    TR+M  ++A  SGA A+ G KY + VRVV+V        S+ LCGGTHV  +G+
Sbjct: 666 ENTEAQTRVMKLDEAKKSGAVAMFGEKYGETVRVVTVHP-----QSTELCGGTHVRRSGD 720

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SE  I +G+RRI A+TG  A  +L   + +L+  A  LK S   +  RVE   
Sbjct: 721 IGLFKILSEGGIASGVRRITAVTGLGALQYLRETERELRKAADLLKTSPKELSKRVEATQ 780

Query: 765 EEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  ++L+    +  ++              ++  +  ++  +   D K  + + D L+ +
Sbjct: 781 KRVKELERKVEEVAVKAQTASNKDVLEQAREVNGMKVLAIRVDPADDKIYRGLADQLRDR 840

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           I+SG++  +G  K+ KA +L+ VT+D++++  +A  L R  AK +GG G GG+  MAQ+G
Sbjct: 841 IRSGVVA-IGGEKDGKALILVAVTKDVVEKGISAGALVREMAKEVGGKG-GGKADMAQAG 898

Query: 879 GPNGNKADQAIAGVASFLK 897
           GP+ +K   A+  +    K
Sbjct: 899 GPDASKLPAALDKLYELTK 917


>gi|170722926|ref|YP_001750614.1| alanyl-tRNA synthetase [Pseudomonas putida W619]
 gi|169760929|gb|ACA74245.1| alanyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 897

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/896 (42%), Positives = 530/896 (59%), Gaps = 55/896 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 24  MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 83

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 84  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLN 143

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 144 LPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 203

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 204 TEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 263

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ V+Q   +NY+IDLF++L+ A+ +  G     +   + +V+ DH+RS  FLIADG+L
Sbjct: 264 RISAVMQHVHSNYEIDLFQNLLSAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 321

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L
Sbjct: 322 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 381

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 382 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 440

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + ++ QR RAR+ S           + SL +   AT F+GY+   G      
Sbjct: 441 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDTATDFVGYNATEG------ 487

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GDT
Sbjct: 488 -----------------QGKVIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDT 530

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  + D  K     F+HH +V  G L     +   +D   +   S+NHSATH
Sbjct: 531 GYLQSGAVRFDVQDTTKTGG-AFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATH 589

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + +T A++K++ED VN  + +N PV T
Sbjct: 590 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVTPAQIKALEDIVNREVRKNTPVET 649

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I + E A   GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+
Sbjct: 650 EITDIETAKRKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 705

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L+
Sbjct: 706 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLIKGNRDNLIDKLSAVLERNRQLE 765

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +  ++     ++  +   D K L +++D L+ K+   +I+
Sbjct: 766 KQLEQLQAKAASAAGDDLSSAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 825

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L G   E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG + 
Sbjct: 826 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 879


>gi|325295645|ref|YP_004282159.1| alanyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325066093|gb|ADY74100.1| alanyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 879

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/906 (41%), Positives = 544/906 (60%), Gaps = 43/906 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL FF+   H  + SS LIP NDPTL+FTN+GMV FK+ F G+EKP ++  T
Sbjct: 5   TGKEIREAFLRFFEDKEHFRVKSSPLIPKNDPTLLFTNAGMVQFKDYFLGKEKPPFKRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+RAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+TK F L +
Sbjct: 65  SCQKCMRAGGKHNDLENVGKTGRHHTFFEMLGNFSFGDYFKKEAIEFAWELVTKVFKLPE 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY++VY++D+EAF++W K+ G+  +KI ++   DNFW+M +TGPCGPCSEI++D+GE 
Sbjct: 125 DRLYVSVYEKDDEAFEIWNKLIGIPENKIYKLGEKDNFWAMGDTGPCGPCSEIYYDRGEE 184

Query: 183 IPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G        + +RY+EIWNLVFMQFE+    +   L   SIDTGMGLER+A+VLQ  
Sbjct: 185 FACGENCEIGKCDCDRYLEIWNLVFMQFERDESGKLTPLAHPSIDTGMGLERIASVLQNV 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +NY+ DL   L++ +  ++G  Y  +     + RVI DHLR+ +FLIADG+LP+NEGRG
Sbjct: 245 PSNYETDLLFPLVKWASDLSGTPYGKDEKSSTSMRVIADHLRALTFLIADGVLPSNEGRG 304

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA  + RLLG  +P +   +  +   MG  YPE+++   LI++    E+ERF
Sbjct: 305 YVLRRIIRRASRHGRLLGIDKPFLFEGVDEVLNIMGDTYPEIVENGRLIKKVTLKEEERF 364

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            KTL+RGL +   ++  L  +  +I+ G+ AFKLYDT G PLD++ ++     L  +D+ 
Sbjct: 365 SKTLERGLYIFAEIIDKLRNEGKDIIPGEEAFKLYDTFGFPLDLILEVANDENLK-VDVS 423

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + L EQ+ RAR    G            L E+   + FIGYD L G           
Sbjct: 424 GFEKLLAEQKERARKAWKGGVQKVISPELQKLSEE-SPSIFIGYDHLEGI---------- 472

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V  I++ G ++EEA  G++V V+ D+TPFY E GGQ+GDTG   G
Sbjct: 473 -------------GKVTGILKDGRLIEEAKEGEEVTVILDKTPFYPEKGGQVGDTGIIEG 519

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +    ++ D Q   E +  H  +V++  ++    +   ++ + R+ +   H+ATHLLH A
Sbjct: 520 NNCYCEVLDTQNITENLIGHKVVVKKEKVKVGDIVNAIVNEERRKAIMRAHTATHLLHKA 579

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS + PD LRFD TH +  T  EL++IE+ V + + +N PV    M+ 
Sbjct: 580 LREVLGNHVKQAGSLVLPDRLRFDFTHFEAPTEEELQTIEETVYNWVLKNYPVKIEEMSY 639

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++AI  GA AL G KY D V        D G  S  LCGGTHV  +G+I    ++SESSI
Sbjct: 640 DEAIERGAIALFGEKYGDVV-----RVVDVGGVSVELCGGTHVERSGDIGFFKLISESSI 694

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G RRIEA+ G+ A  ++  ++  +K L S L+  +  ++ +VE++ EE +  +    +
Sbjct: 695 SSGTRRIEAVVGKEAFKYIEEKEALIKKLRSSLQSPEEQLLQKVEKLKEELKAKEKELER 754

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L   ++         I  +  ++  +     KEL  + D ++ K ++  +M+VGI 
Sbjct: 755 IKKKLATAEIDQIVEDAPIINGIKVVTAKLEGFGGKELAEIADVIRNKAKTAAVMIVGI- 813

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           K+ KAS+LI +T+DL DRF A ++ R  A +L  G GGGRP MAQ G  N +K ++A + 
Sbjct: 814 KDGKASLLIALTKDLTDRFKAGEIIREIAPILE-GRGGGRPDMAQGGVQNLSKLEEAFSE 872

Query: 892 VASFLK 897
                K
Sbjct: 873 FRKKFK 878


>gi|220931419|ref|YP_002508327.1| alanyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|219992729|gb|ACL69332.1| alanyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 876

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/906 (41%), Positives = 543/906 (59%), Gaps = 48/906 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           +    +R  +L+FF+  GH +LPS+ LIP NDP+L++ N+GM PFK  F G++KP    +
Sbjct: 3   TTSDELRKAYLDFFKDRGHLVLPSAPLIPRNDPSLLWINAGMAPFKPYFDGRKKPPKTRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           +T QKC+R     ND++NVG+T RH TFFEMLGNFSFG YFKE AI+ AW+ +T+  +L+
Sbjct: 63  STSQKCIRT----NDIENVGKTARHLTFFEMLGNFSFGDYFKEEAIEWAWEFVTRVLNLE 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+IT+Y +D+EAFK+W    G+  ++I+R+   DNFW +  TGPCGPCSEI +D+GE
Sbjct: 119 ENRLWITIYKDDDEAFKIWHDKVGVPENRIVRMGKKDNFWEIG-TGPCGPCSEIHYDRGE 177

Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                       EG+R++EIWNLVF Q+ +    E   LP+ +IDTGMGLER+A++LQ  
Sbjct: 178 EFGNSSEDVIGGEGDRFLEIWNLVFTQYNRTEDGEYLSLPQKNIDTGMGLERVASLLQGV 237

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +N++ DL K +I    Q +G++Y     V  RVI DH+R+ +  I DG+LP+NEGRGYV
Sbjct: 238 NSNFETDLLKPIINFVSQDSGVQYTEGQRVPFRVISDHIRAVTMAIHDGVLPSNEGRGYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RR++RRA+ Y   L Y EP +  ++P +   M   YPEL + +  +   ++SE+ERF +
Sbjct: 298 IRRLLRRAVRYGGKLNYEEPFLYKIVPVVVDIMSGGYPELKEKEEHVSSVVKSEEERFFQ 357

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL++GL +L+ ++  +    ++IL+G  AFKLYDT+G PLD+ +D+L   G   +D   F
Sbjct: 358 TLEQGLNILNEMMEEMKDKGEKILSGKNAFKLYDTYGFPLDLTRDVLAEHGYK-VDEDVF 416

Query: 419 NQALEEQRSRARAHSLGLGSGTTE--KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            + +E+QR RAR     +G   T+   I+  L+E+ G T+F GY  L             
Sbjct: 417 TREMEKQRERARQARADVGFSGTDGEGIYKELREELGETEFTGYRSLSN----------- 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       ++ +  IV+ G+ VE   +G+K E++ + TPFYA  GGQ+GD G  I 
Sbjct: 466 ------------TTRIVGIVKDGQPVESLNNGEKGEIILNVTPFYARGGGQVGDKGILID 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              R ++ D +KK   + VH+  VE+G  R +  +   +D + R  ++ NHS THLLH  
Sbjct: 514 SEHRARVYDTRKKGG-LTVHYTEVEKGEFRIDQVVEARVDEELRYNIARNHSTTHLLHKT 572

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q+GS + PD LRFD +H  P+T  E+  IED VN+ I  NLPV    M  
Sbjct: 573 LKEVLGDHVNQSGSLVAPDRLRFDFSHYAPLTEEEINRIEDTVNEKILSNLPVEILEMPF 632

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E A   GA AL G KY   VRVV +     G +S  LCGGTHV  TGEI    IVSE S+
Sbjct: 633 EKAKEMGAVALFGEKYGHIVRVVKI-----GDYSIELCGGTHVDRTGEIGSFKIVSEGSV 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+    H+   D  +K ++S LK S   V+GR+  + EE  +L+     
Sbjct: 688 AAGVRRIEALTGKSVLEHIRKNDNTIKKISSILKTSPDEVIGRLSGLLEEQNELENKLQS 747

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K QL    +        KI  V  ++  +  ++S  L+ + D L++K++SGII+L   +
Sbjct: 748 LKDQLATSRVDELVDEVQKINGVKVLTAELKGIESDNLRKLSDKLKEKMESGIIVLAS-N 806

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K   + VVT+DL++R F+A  L    A+V GGGG GGRP MAQ+GG   +K  +A+ 
Sbjct: 807 LGNKVIFVSVVTDDLVERGFHAGKLIGKVARVTGGGG-GGRPDMAQAGGKKVDKITEALD 865

Query: 891 GVASFL 896
                +
Sbjct: 866 EGKRII 871


>gi|153006742|ref|YP_001381067.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|205829977|sp|A7HH87|SYA_ANADF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152030315|gb|ABS28083.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 904

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/934 (39%), Positives = 532/934 (56%), Gaps = 75/934 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL FF++  H  +PSSSL+P NDPTL+FTN+GM  FK++FTG+EK  Y  
Sbjct: 1   MKTAAQIRELFLRFFEEKAHRRVPSSSLVPQNDPTLLFTNAGMNQFKDVFTGREKRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+L+T  +  
Sbjct: 61  ATTAQKCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKKEAIAWAWELVTSERWL 120

Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + + RL  TV+        DEEA++LW +  G+  ++I ++   DNFW+M +TGPCGPC
Sbjct: 121 AISKERLAATVFAGEGTLPWDEEAYRLW-EAQGVPPERIHKLGAKDNFWAMGDTGPCGPC 179

Query: 173 SEIFFDQGECIPGGLPG-------SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           SE+ F QG  IP             + + +R++EIWNLVFMQFE+        LPK SID
Sbjct: 180 SELHFFQGNDIPCAEEKAGRTCQGVACDCDRWLEIWNLVFMQFERGADGGLTPLPKPSID 239

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSS 282
           TG GLERMA V+Q K +NYDID F+ +I+A E++ G +Y   + ++ V+ RVI DH R++
Sbjct: 240 TGAGLERMAAVVQGKRSNYDIDAFQSIIRAIEKLAGKRYGATDADDDVSMRVIADHARAT 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +FL+ DG+LPANEGRGYVLRRIMRRA+ + + LG   P +  +  A+  EMG AYPE  +
Sbjct: 300 TFLVGDGVLPANEGRGYVLRRIMRRAIRHGKRLGLERPFLADVCEAVMEEMGGAYPETRE 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD----------------EILNGDV 386
            +  I +    E+E F +TLD+GL +L+  +                       +++G +
Sbjct: 360 NRAFIVKVAGQEEESFRRTLDKGLAILETEMRKAIPPETHLGKPATPPPSAPRPVIDGKL 419

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT G PLD+ + I   RG   +D   F++ + EQR+R+     G G      +  
Sbjct: 420 AFQLYDTFGFPLDLTRVIAAERGF-DVDEQGFDRNMAEQRARS--EWKGSGEQAVGDLHK 476

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
            +  + G T+F+GY+                            + VKA++  G    +A 
Sbjct: 477 QIASELGETRFLGYEAP-----------------------TARAEVKALLANGARAAKAA 513

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G KVEVV   TPFY E+GGQ+GD G     G R+++ D ++   G+  H  +VE G L 
Sbjct: 514 RGDKVEVVTAATPFYGESGGQVGDQGSIAAPGGRVRVEDTRRPVPGLVTHVGVVEEGELA 573

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L +D + R  +  NHSATHLL  AL   LG HV Q GS + PD LRFD +H +P
Sbjct: 574 VGDLVELAVDDRRRDLIRANHSATHLLQLALRETLGDHVKQAGSIVAPDYLRFDFSHFQP 633

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           ++  EL +IE  VN+++ +N    T ++  EDA  SGA  + G KY D VRVV +     
Sbjct: 634 LSEEELNAIERRVNELVRENAETETAVLKLEDARQSGAMMIFGEKYGDVVRVVRLGP--- 690

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              S  LCGGTHV  TG+I    I SE SI AG+RRI A TG +A      + ++L+  A
Sbjct: 691 ---SKELCGGTHVRRTGDIAFFKIGSEESIAAGVRRIVAYTGPQAIELSQREADELRRAA 747

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII 801
           +  K     V  ++E+  +  + L+    + K ++              +     ++  +
Sbjct: 748 ALFKAGAFEVAQKIEQTQKRVKDLERALDEAKGKIASAQSGDLAAQARDVKGAKVLAVRV 807

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
              D K L+ + D L+ ++ +G++ L G  ++ KA +L+ VT+DL  R  A +L + +AK
Sbjct: 808 QG-DGKSLRELADKLRDRLGTGVVAL-GAEQDGKAILLVAVTKDLTARLKAGELVKEAAK 865

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           ++ GG GGG+P +AQ+GG +    ++A+A V   
Sbjct: 866 LV-GGSGGGKPDLAQAGGSDPAGLEKALAKVQEL 898


>gi|261364444|ref|ZP_05977327.1| alanine--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288567357|gb|EFC88917.1| alanine--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 873

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/913 (39%), Positives = 524/913 (57%), Gaps = 58/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +V+ DH+RS SFLIADG++
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVVADHIRSCSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+       L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALTK--GSNKLDGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN+ +        A      +    K    L      T+F GY+          
Sbjct: 417 DLDEEGFNREM-------EAQRARARAAQNFKANAQLDYTGADTEFTGYE---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ +  E V+E  +G+   VV +QTPFYAE+GGQ+GD 
Sbjct: 460 -------------KRSQETKIIALYKGSEAVDELQAGEAGVVVLEQTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +      V  G L+   ++   ID   R  +  NHS TH
Sbjct: 507 GFIFAGENRFRVEDTQKIKAAVHGQFGSVVSGRLKVGDAVSAEIDNDIRNSIMRNHSVTH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS    +  RFD++H + I++ E+  +E  VN  I  N+PV  
Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKV 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ EDA  SGA  L G KY D VRV+++     G +S  LCGGTHV+ TG+I    I+
Sbjct: 627 ETMSIEDAQKSGAVMLFGEKYGDFVRVITM-----GDYSIELCGGTHVARTGDIGFFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AGIRR+EAITG  A +    Q+  +K++ + +K     +V+ +++      + L
Sbjct: 682 SEGGIAAGIRRVEAITGLAALAWAQNQESLVKNIIAEVKAQTEKDVLAKIQANAANAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V        +   +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKL 858

Query: 886 DQAIAGVASFLKK 898
            + +  V  ++++
Sbjct: 859 PEMLGSVEGWVRE 871


>gi|254670010|emb|CBA04754.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha153]
          Length = 885

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/911 (40%), Positives = 521/911 (57%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 12  MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 72  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPC 191

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +VI DH+RS SFLIADG+L
Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 310

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE L
Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEAL 370

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 427

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 428 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 472 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 517

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 518 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 578 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFL 896
            + +  V S+L
Sbjct: 870 PEMLVSVESWL 880


>gi|296448225|ref|ZP_06890121.1| alanyl-tRNA synthetase [Methylosinus trichosporium OB3b]
 gi|296254265|gb|EFH01396.1| alanyl-tRNA synthetase [Methylosinus trichosporium OB3b]
          Length = 897

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/900 (48%), Positives = 589/900 (65%), Gaps = 43/900 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IRTTFL+FF +NGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNQIRTTFLDFFSRNGHEKVASSPLVPLNDPTLMFTNAGMVQFKNVFTGFEKRHYAR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKC+RAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+++E  L
Sbjct: 61  ATSAQKCMRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEGAIELAWTLVSRELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY +D+EA+ LWKKI+G S D+IIRI ++DNFWSM + GPCGPCSEIF+DQG
Sbjct: 121 PRERLLVTVYHDDDEAYGLWKKIAGFSDDRIIRIASSDNFWSMGDLGPCGPCSEIFYDQG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG P    E+G+R++E WNLVFMQ++Q    ER  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 ESVAGGPPGSPDEDGDRFLEFWNLVFMQYDQTAPGERVPLPRPSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +DIDLF+ L  A    TG+   G    +HRVI DHLR+S+FL+ADG+ P+NEGRGY
Sbjct: 241 VHSVFDIDLFRRLTGAVADATGVDAAGPQAASHRVIADHLRASAFLVADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL TEM  AYPEL +A+ LI +TL +E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAAEPLMHRLVGALVTEMAQAYPELTRAERLIRDTLLTEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL +LD   + L +   L+G+ AFKLYDT+G PLD+ +D L +RGL+ +D   F 
Sbjct: 361 QTLARGLAILDEETATLAQGGSLSGETAFKLYDTYGFPLDLTEDALRSRGLS-VDKAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR+ AR    G G   TE +WF+++E+ GAT+F+GYD                  
Sbjct: 420 TAMARQRAEARKAWAGSGETATESVWFAIEERVGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     IV A++  G        G +  V+ +QTPFYAE+GGQ+GD G     G+
Sbjct: 462 -----TEKSEGIVVALLHDGAETFRLEPGARGAVLLNQTPFYAESGGQIGDIGEMRAKGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++T+ QKK  G+FVH  +VE G +   ++L L ID+  R  +  NHSATH+LH AL  
Sbjct: 517 RFRVTNTQKKLGGLFVHEGVVEEGAITPGLALELEIDHSRRNAVRANHSATHILHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +  D LRFD TH KP+T  E+  +E   N+++  N PV TR+M ++DA
Sbjct: 577 VLGDHVAQKGSLVASDRLRFDFTHPKPLTEEEVAEVERIANEVVQDNAPVDTRLMAQDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-------------HSSALCGGTHVSSTGEIM 706
           I SGA AL G KY D VRVVS+     G               S  LCGGTHV  TG+I 
Sbjct: 637 IHSGARALFGEKYGDEVRVVSMGSLSTGQPSTDLAPTDQHHAFSVELCGGTHVRRTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ IVS+ ++ +G+RRIEA T + AR+ L+     L+ +A+ ++V       R+  + EE
Sbjct: 697 LVSIVSQGAVASGVRRIEAKTAEAARAQLVADSRALREVAALVRVPVDETPARLAALLEE 756

Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++L+   A+ K +L +   +       +I  +   +  +S +D K+LKS++D  +K + 
Sbjct: 757 RKQLERELAEAKRKLAMGGGANGAAPVREIDGIKLFAKAVSGIDPKDLKSLVDEQKKALG 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SG++ +   S + KA +++ VT DL   +NAVDL R +++ LGG GGGGRP +AQ+GGP+
Sbjct: 817 SGVVAIASASADGKAGIVVGVTADLTTTYNAVDLVRAASEKLGGKGGGGRPDLAQAGGPD 876


>gi|319410810|emb|CBY91198.1| alanyl-tRNA synthetase [Neisseria meningitidis WUE 2594]
          Length = 885

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/911 (40%), Positives = 520/911 (57%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 12  MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 72  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPC 191

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +VI DH+RS SFLIADG+L
Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMDEPSLKVIADHIRSCSFLIADGVL 310

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 370

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 427

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 428 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 472 --------------RQTESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 517

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 518 GYIFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 578 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY + VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFL 896
            + +  V S+L
Sbjct: 870 PEMLVSVESWL 880


>gi|304386989|ref|ZP_07369247.1| alanine--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304338946|gb|EFM05042.1| alanine--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 885

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/911 (40%), Positives = 520/911 (57%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 12  MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 72  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 191

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 192 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 310

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 370

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  D+    G  
Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADMARELG-I 427

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 428 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 472 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 517

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 518 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 578 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 637

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 638 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFL 896
            + +  V S+L
Sbjct: 870 PEMLVSVESWL 880


>gi|262369620|ref|ZP_06062948.1| alanyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262315688|gb|EEY96727.1| alanyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 892

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/924 (41%), Positives = 520/924 (56%), Gaps = 62/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLSYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT      
Sbjct: 61  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTGEAWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY TVY  D+EAF +W K  GL A +IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYATVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GGLP    E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK------------YEGNNIVNHRVIVDHL 279
           R++ VLQ   +NY+IDLF+HL++A+ ++ G+                    + +V+ DH 
Sbjct: 241 RISAVLQHVNSNYEIDLFQHLLKAAAEIIGLDTAALEAEAREKGTPVQYPASLKVVADHA 300

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS SFLIADG+ P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPE
Sbjct: 301 RSCSFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGSFFHKMLQPLIEVMGQAYPE 360

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L   K  IE  L  E+E+F KTL++GL LL+G L+ L    ++ G+V FKLYDT+G P D
Sbjct: 361 LEAQKARIEAQLLKEEEQFAKTLEQGLKLLEGELAQLK-GSVIPGEVVFKLYDTYGFPTD 419

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  DI   R L  ID   F   +  QR RAR       +G     + S+ +  G TQF G
Sbjct: 420 LTADIARERDLT-IDEAGFEVEMAAQRQRAR------DAGKFAIDYNSVVKVEGETQFDG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD   G                          + AI + GE V+E V G +  +V +QTP
Sbjct: 473 YDATVG-----------------------EGQIIAIYKDGEQVDEVVEGDEALIVLNQTP 509

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE+GGQ+GDTG    D    ++ D +K     FVH  IV  G ++   ++  T+    
Sbjct: 510 FYAESGGQIGDTGIFKNDTGIFEVQDTKKSGG-AFVHQGIVTVGSIKLAQNVEATVKADI 568

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R   + NHSATHLLH AL  ILG HV Q GS +  D LRFD  + +P++  +L+ IE  V
Sbjct: 569 RAATARNHSATHLLHAALRQILGEHVQQKGSLVASDILRFDFANDQPVSFEQLQEIERLV 628

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTH 698
           N  +  N  V T +++ E A A GA  L G KY D VRV+S+    +    S  LCGG H
Sbjct: 629 NAEVIANSAVTTELLDIESAKAKGAMMLFGEKYGDEVRVLSMGSIIEEKNFSIELCGGIH 688

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  TG+I L  I SE  + AG+RRIEA+TG +A       D  + ++   LK  +   + 
Sbjct: 689 VKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKAIEVTQKADRDINTINGLLKAQKDQTLE 748

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVM 813
           +VE + +    LQ    +   +L     +        +A    +   +  +D+K L+++ 
Sbjct: 749 KVEALVDTASSLQKQIEQLNQKLASFQAAELLSQVQTLAGRQTLITTVQNMDAKSLRNLH 808

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D ++ K+++ +I+L G+  + K S++  V +D      A D+ +  A  L GG GGG+P 
Sbjct: 809 DGVKSKLENAVIVLAGVEGD-KVSLIASVAKDFTASIKAGDIIKHLATEL-GGKGGGKPD 866

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           +AQ G P   K    +A + ++L+
Sbjct: 867 LAQGGAPLNEKFATVMADLTAWLE 890


>gi|103487205|ref|YP_616766.1| alanyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
 gi|123253182|sp|Q1GSD9|SYA_SPHAL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|98977282|gb|ABF53433.1| alanyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
          Length = 884

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/888 (49%), Positives = 592/888 (66%), Gaps = 37/888 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F   GH + PS+ L+P NDPTLMF N+GMVPFKN+FTG EK  Y  
Sbjct: 1   MTSTNDIRRSFLDYFGGAGHHIEPSAPLVPYNDPTLMFVNAGMVPFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW L+T+ + L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHHAWTLITQTWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LWKKI+GL  ++IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 APEKLTATVYHTDDEAFDLWKKIAGLPDERIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG PGS  E+G+R++EIWNLVFMQ+EQ    ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHVRGGPPGSPEEDGDRFVEIWNLVFMQYEQLPGGERVDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI+AS ++TG++ +  +  +HRVI DHLR+SSFL+ADG+LP+NEGRGY
Sbjct: 241 VHDNYDTDTFKALIEASVELTGVRADEAHRASHRVIADHLRASSFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  LLP+L  EMG+AYPELI+A+ LI ETL  E+ +F 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLLPSLTAEMGAAYPELIRAQPLIAETLEREEVKFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+GL LLD   + +G+ + L GDVAFKLYDT+G P D+ +D L ++G   +D   F+
Sbjct: 361 QTLDKGLRLLDEATADMGRGDTLVGDVAFKLYDTYGFPYDLTEDALRSKG-ISVDRAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ ARA   G G   +E+IWF L E +G+T+F GY    G              
Sbjct: 420 AAMAQQKAAARAAWKGSGQKASEEIWFDLAETHGSTEFTGYTSTSG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V A+V+ G+ VEEA +G +V V+ +QTPFY E+GGQ+GD G       
Sbjct: 466 ---------EATVIALVRDGQPVEEARAGDEVIVLTNQTPFYGESGGQMGDAGMIATLEG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  ++D  K    +  H A +E G L+   ++ LT+D + R ++  NHSATHLLH AL 
Sbjct: 517 AKASVSDTGKPLGRLHTHQAKLEAGTLKVGDTVQLTVDAERRDRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS +  D  RFD +H K +T+AE+  IE +VN  I  N PV TR+M  +D
Sbjct: 577 NRLGGHVTQKGSLVAADRFRFDFSHPKALTAAEIADIEADVNAQIRGNEPVTTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AIA+GA AL G KY D VRV+++   D   +S  LCGGTHV + G+I L  IVSES++ +
Sbjct: 637 AIAAGALALFGEKYGDEVRVLAMGKADDRNYSVELCGGTHVRALGDIALFKIVSESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ AR  L G+DE LK+ A+ LK S   V  RV ++ E+ +K +   A  K
Sbjct: 697 GVRRIEALTGEAARQWLNGRDEALKAAAAALKTSPDEVPARVAQLAEQLKKAERELADAK 756

Query: 779 LQL----------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             L               +  ++ DV F++ ++  +D KEL+  +D L+K++ SG+ MLV
Sbjct: 757 KALALGGSGGDGGAAAGPAVEQVGDVAFLAQVVDGLDPKELRGTVDGLKKQVGSGVAMLV 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +  + +ASV + VT+D     +AVDL + +   LGG GGGGRP MAQ
Sbjct: 817 AV-NDGRASVAVGVTDDKTGHHSAVDLVKAAVVALGGQGGGGRPDMAQ 863


>gi|148546681|ref|YP_001266783.1| alanyl-tRNA synthetase [Pseudomonas putida F1]
 gi|148510739|gb|ABQ77599.1| alanyl-tRNA synthetase [Pseudomonas putida F1]
          Length = 897

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/896 (41%), Positives = 528/896 (58%), Gaps = 55/896 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 24  MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 83

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  +
Sbjct: 84  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLN 143

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 144 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 203

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 204 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 263

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L+ A+ +  G     +   + +V+ DH+RS  FLIADG+L
Sbjct: 264 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 321

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L
Sbjct: 322 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 381

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 382 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 440

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD   G      
Sbjct: 441 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDTTEG------ 487

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD+
Sbjct: 488 -----------------QGKIIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDS 530

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K     F+HH +V  G L     +   +D   +   S+NHSATH
Sbjct: 531 GFLQAGAARFDVRDTTKTGG-AFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSATH 589

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  I +N PV T
Sbjct: 590 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVET 649

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+
Sbjct: 650 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 705

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L+
Sbjct: 706 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 765

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +  ++     ++  +   D K L +++D L+ K+   +I+
Sbjct: 766 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 825

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L G   E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG + 
Sbjct: 826 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 879


>gi|94987623|ref|YP_595556.1| alanyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
 gi|205830129|sp|Q1MP42|SYA_LAWIP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94731872|emb|CAJ55235.1| Alanyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
          Length = 884

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/908 (40%), Positives = 521/908 (57%), Gaps = 37/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  V+ IR  FL +F+   H+ +PSSSLIP +DP+L+FTN+GMV FK +FTGQE   Y  
Sbjct: 1   MLTVNDIRQKFLGYFKNYNHQEIPSSSLIPRDDPSLLFTNAGMVQFKKVFTGQETRNYLR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW  +T+E +L
Sbjct: 61  ATTAQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIQFAWAFITEELNL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            +  LYIT+Y +D++A+ +W    G+   +I R+   DNFWSM +TGPCGPCSEI FDQG
Sbjct: 121 SKEFLYITIYKDDDDAYDIWVNTIGVEPSRIYRMGEKDNFWSMGDTGPCGPCSEIHFDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G      S + +R++EIWNLVFMQ+EQ    ER ILPK SIDTGMGLER+  + Q
Sbjct: 181 ETFCCGDNCGIGSCDCDRFLEIWNLVFMQYEQLPSGERVILPKPSIDTGMGLERIVAICQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +K++NYD DLF+ +IQ    + G+ Y       +  RVI DH R+ +F+IADGILP+NEG
Sbjct: 241 QKSSNYDTDLFQPIIQYMASIAGVHYKKHEETDIALRVIADHSRAIAFMIADGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + +G  +P +   +  +   MG  Y EL      +   +  E+E
Sbjct: 301 RGYVLRRLIRRAFRFGKQIGMNQPFLYKTVNKVVELMGDIYTELYSRSEFMSRVVFDEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TLD+GL+LL+  L+ L +     L GD+AFKLYDT+G PLDI+ DI   +    +D
Sbjct: 361 RFSITLDKGLILLEAELNALKEKNTKELPGDIAFKLYDTYGFPLDIINDIASKK-HFAVD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F   ++EQ+ RAR+   G G    E  + +L E    ++FIGY+ L G+  +     
Sbjct: 420 EANFQHLMQEQKERARSQWKGSGEKRIEACFQTLLEDGMQSEFIGYENLSGTGRI----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V  +   G  +EE  +     V+ D TPFY  +GGQ GD G  
Sbjct: 475 -----------------VALLDIDGLPIEELPTKSSGYVITDMTPFYGTSGGQTGDIGIL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                + Q+ D  K A  + VH   V  G +  +   +L +    R   + NH+ TH+L 
Sbjct: 518 STITGKTQVVDTLKPATNLIVHVVTVTSGTILLDQEALLVVSESERLDTARNHTCTHILQ 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L  ILG HV Q GS ++P  LRFD TH  P+T  E+ +IE  VN II  NLP+    M
Sbjct: 578 SVLQKILGDHVRQAGSLVSPTRLRFDFTHIAPLTEEEIHAIELQVNTIIMANLPLRVEFM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +++ A+  GA AL   KY + VRVV++   +    S  LCGGTH++STG+     IVSE+
Sbjct: 638 DQQSALEKGAMALFEEKYGNIVRVVTIGS-ENQTASIELCGGTHLTSTGQAGCFIIVSET 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEAITG+   +++    ++L + A+ LK     VV +V  I  E + LQ   
Sbjct: 697 GIAAGVRRIEAITGRNTLAYIKEYQKELSTTAAILKTKPEKVVEKVTSILSENKNLQKTV 756

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              +             +  +I +++ ++  +     K L+ +MD ++ K+ SGI+ L  
Sbjct: 757 DTLESSSLSNQGKHLLDNLTRINNIDVLTANLKNFSLKALRDIMDDIRSKLSSGIVCLAS 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
                K  +L+ V++DL   F A +L +     +  G GGGRP  AQ+GG N +   +  
Sbjct: 817 TEGT-KVHLLLYVSKDLHHNFTASELIKKIVVPIH-GAGGGRPDQAQAGGTNPSGLSETF 874

Query: 890 AGVASFLK 897
             + + L+
Sbjct: 875 ELLKNILE 882


>gi|241765465|ref|ZP_04763432.1| alanyl-tRNA synthetase [Acidovorax delafieldii 2AN]
 gi|241364775|gb|EER59764.1| alanyl-tRNA synthetase [Acidovorax delafieldii 2AN]
          Length = 874

 Score =  867 bits (2240), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/909 (40%), Positives = 519/909 (57%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 6   TVADIRKTFLDFFASKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAV 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 66  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPA 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI         +DNFW MA+TGPCGPCSEI
Sbjct: 126 DRLLATVYQEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+R+IEIWN VFMQF+         LP   +DTGMGLER+A
Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERLA 245

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + TG+     N  + RVI DH+R+++FL++DG++P+N
Sbjct: 246 AILQHVHSNYEIDLFDALIKAAGRETGVTD--LNNKSLRVIADHIRATAFLVSDGVIPSN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L   MG AYP L + +  I E L++E
Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGKKTPFFHKLVADLVRLMGDAYPALREQEQRITEVLKAE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT+G PLD+  D+   R    +D
Sbjct: 364 EERFFETLANGMEILDAALD--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERD-VEVD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E+Q+++ARA           K+  +L+    A QF GY+ L           
Sbjct: 421 EAGFKTAMEKQKAQARAAGKF-------KMDKALEYTGAANQFTGYEHL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + AI   G       +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 463 ------------AETAKIVAIYVDGTSAAALKTGQNGVVVLDTTPFYAESGGQVGDEGVI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D  K    +F HH  +E G L    ++   ++   R     NHS THL+H
Sbjct: 511 TSGSARFAVGDTLKVKADVFGHHGTLEHGTLNVGDTVQAQVNTAVRAATMRNHSVTHLMH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS +  D  RFD  H+  +T+AE++ IE  VN+ I  N P   R+M
Sbjct: 571 KALREVLGSHVQQKGSLVNADRTRFDFAHNAAVTNAEIREIERRVNEEILANQPTQARVM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +VSE 
Sbjct: 631 DIESAQKTGAMMLFGEKYGETVRVLDIG------TSRELCGGTHVQRTGDIGLFKVVSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG  A ++L   ++ +   A  LK     + GR+ +  E  R L+   
Sbjct: 685 GVAAGVRRIEAVTGANALAYLQQLEDTVHQAAGTLKAPVAELNGRIGQALEHARALEKEV 744

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L             ++  +  ++  +   D+K L+  MD L+ K+++  I+L  
Sbjct: 745 AALKGKLASSQGDELVTQAVEVKGLKVLAAALPGADAKTLRDTMDKLKDKLKTAAIVLAA 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D + R  A +L    A+ +GG G GG+P MA +GG + +K   A+
Sbjct: 805 VDGD-KVQLAAGVTSDTVGRIKAGELVNFVAQQVGGKG-GGKPDMAMAGGTDASKLPAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 ASVTGWVTQ 871


>gi|192362500|ref|YP_001981850.1| alanyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|190688665|gb|ACE86343.1| alanyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 875

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/911 (40%), Positives = 528/911 (57%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F+  GH ++ SSSL+P NDPTL+FTN+GM  FK++F G E   Y   
Sbjct: 1   MKSAEIRDAFLKYFESKGHTVVASSSLVPGNDPTLLFTNAGMNQFKDVFLGGETRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT     +
Sbjct: 61  ASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWEFLTSKAWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           +   +L++TVY  D+EA+ +W    G+ A++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 IPAEKLWVTVYASDDEAYAIWHNEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ V+Q   +NY+IDLF+HL+ A+ + TG         + RVI DH+RS SFL++DG+L
Sbjct: 241 RISAVMQHVHSNYEIDLFQHLLSAAVEATGTSD--LESKSLRVIADHIRSCSFLVSDGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +P    L+ AL   MG AYPEL + +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRAIRHGNKLGQKQPFFHKLVKALAEVMGDAYPELHKNRAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTLD+G+ +L+  L+ L   EI  G + F LYDT+G P+D+  DI   RGL 
Sbjct: 359 LQEEEQFEKTLDKGIAVLEDALAKLSGTEI-PGKLVFTLYDTYGFPVDLTNDIARERGLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   ++ A+          +    +GT +  + ++     AT+F+GY  L        
Sbjct: 418 -IDQDGYDAAMA------EQRARARAAGTFKVDYSAVGLDLPATEFLGYRQL-------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+++  + V+  V G    VV D+TPFYAE+GGQ GD 
Sbjct: 463 ---------------AEQGKVVALIKDSKKVDRLVEGDDGVVVLDRTPFYAESGGQAGDC 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G RL++ D  +K     +H   V +G +         +D   R+  ++NHSATH
Sbjct: 508 GYLEQGGNRLEVRD-CQKQANAHLHLVHVLQGAISVGDVFGAKVDANVRQATALNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV+Q GS +  + LRFD +H + +T  +LK+IE  VND +  N  V T
Sbjct: 567 LMHAALRKVLGEHVTQKGSLVDSERLRFDFSHFEAVTPEQLKTIETLVNDQVRANSAVAT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + + A A GA AL G KY D VRV+++        S  LCGGTHV+ TG+I +  I 
Sbjct: 627 ELCDMDTAKAKGAMALFGEKYGDTVRVLTMGD----GFSVELCGGTHVARTGDIGVFRIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + AGIRRIEAITG +A +     +  + + A  +K ++ N++ +++ +  + RKL+
Sbjct: 683 SESGVAAGIRRIEAITGTKALALFDQVESLVDAAARSIKANRDNLLEKLDALVAQNRKLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L              +  +  ++  +   D++ L+  +D  + K+ S +++
Sbjct: 743 KDLAGLKTRLATAGSGDVLSQAQDVNGIKVLALNLEGADARSLRDTVDQFKNKLGSAVVL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S++  VT+D+  +  A DL    A  +GG G GGRP MAQ GG +  +  
Sbjct: 803 LAAVEND-KVSLVAGVTQDITAKVKAGDLMAHVAGQIGGKG-GGRPDMAQGGGTDVARLA 860

Query: 887 QAIAGVASFLK 897
            A+A V  ++ 
Sbjct: 861 DALASVLPWVN 871


>gi|261379016|ref|ZP_05983589.1| alanine--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269144550|gb|EEZ70968.1| alanine--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 874

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/912 (40%), Positives = 519/912 (56%), Gaps = 58/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVHSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +   
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLS 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLDGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 ELDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D   R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDGIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVECRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKSL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V        +   +     ++  I    +  L+ ++  L  K +  I+
Sbjct: 742 EKDLAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSEQAIV 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKL 858

Query: 886 DQAIAGVASFLK 897
            + +  V  +++
Sbjct: 859 PEMLGSVEDWVR 870


>gi|59801613|ref|YP_208325.1| hypothetical protein NGO1254 [Neisseria gonorrhoeae FA 1090]
 gi|75432448|sp|Q5F7C4|SYA_NEIG1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|59718508|gb|AAW89913.1| putative alanyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
          Length = 874

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/911 (40%), Positives = 515/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGEQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 859 PEMLASAEGWL 869


>gi|255021551|ref|ZP_05293594.1| Alanyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
 gi|254968939|gb|EET26458.1| Alanyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
          Length = 880

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/906 (41%), Positives = 540/906 (59%), Gaps = 40/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               +IR  FL+FF   GHE++PSS L+P NDPTL+FTN+GMVPFK+ F G E+  Y+  
Sbjct: 1   MRSQAIRQAFLDFFAARGHEIVPSSPLVPRNDPTLLFTNAGMVPFKDTFLGLEQRPYRRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK   I  AW  LT+   L 
Sbjct: 61  VSAQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGYAWTFLTEVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-G 180
             RL++TV+ ED EA  +W +  G+   +  R    DNFWSM +TGPCGPCSEIF+D   
Sbjct: 121 PERLWVTVFAEDREAEDIWLREMGIDPARFSRCGEKDNFWSMGDTGPCGPCSEIFYDHGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E   G       +G+RYIEIWNLVFMQ+++ +      LPK S+DTGMGLER+A VLQ  
Sbjct: 181 EIPGGPPGSPDADGDRYIEIWNLVFMQYDRDSSGRLTPLPKPSVDTGMGLERLAAVLQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            NNYD DLF+ LIQA+  ++G  Y  +     + RV+ DH+R+ SFL+ADG+LP+NEGRG
Sbjct: 241 HNNYDTDLFQPLIQAAADISGKVYGADPAADTSLRVLADHVRACSFLMADGVLPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + R LG  +     L+P L + MG AYPEL +A+  I+  LR E+ RF
Sbjct: 301 YVLRRIIRRAVRHGRKLGLGDIFFHRLVPPLVSVMGEAYPELRRAERDIQGHLRREEARF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL+RGL LL+  +  L     + G+V F+L DT+G P+D+  DI   RGL  +D+  F
Sbjct: 361 RETLERGLELLEEAIGGLAPGAPIPGEVIFRLSDTYGFPVDLTADIARERGL-ALDMPGF 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             AL EQR R+RA  +G G    ++++  L  +  AT+F+GY                  
Sbjct: 420 EAALAEQRQRSRAAWVGSGEVKADRLYHDLAMELPATEFLGY------------------ 461

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     +  V A+++ G+ V+   +G+   V+ DQTPFY E+GGQ+GD G      
Sbjct: 462 -----GGCSGAGRVLALIRDGQRVDVLRAGETGSVILDQTPFYGESGGQVGDRGLLTDAA 516

Query: 539 I-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             R  + D QK    + +H   VE G LR    +   +D   R   + +HSATHLLH AL
Sbjct: 517 GLRFVVQDTQKPVASLHLHLGRVESGELRLGHIVHAEVDSDARAATAAHHSATHLLHAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TP+ LRFD +H +P+T A+L+S+E+ VN  +  N+    +++   
Sbjct: 577 RTLLGSHVQQKGSLVTPERLRFDFSHPEPLTLAQLQSLENWVNAAVRANVVADVQVLPIA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A + GA AL G KY + VRV+ +     G +S   CGGTHV +TG+I    I++ES + 
Sbjct: 637 QAQSLGALALFGEKYGEEVRVLRL-----GDYSLEFCGGTHVQATGDIGCFKILAESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA  G  A + +   +++L++ A+ L V+   +  R+ +  E  R+L+    + 
Sbjct: 692 AGIRRIEAAAGAAAIAAVQLDEQRLRAAAALLHVAPAELDQRLAQTLERQRQLEKELERL 751

Query: 778 KLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L  +       +   IA V  +   I  +D K L+ ++D L+ +I  GI++L G+  
Sbjct: 752 RQKLAAQAGERLASAVEDIAGVPVLVQQIDGMDGKGLRELVDRLRSQIPHGILLLAGVQN 811

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K +++  V+++L DR  A  L    A+V+ GG GGGR  +AQ+G  +  +   A A  
Sbjct: 812 D-KVALIAAVSKELTDRVAAGPLVHAVAEVM-GGKGGGRADLAQAGAEHPEQLTAAFALA 869

Query: 893 ASFLKK 898
            ++L++
Sbjct: 870 RAWLEQ 875


>gi|194097831|ref|YP_002000876.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|239998317|ref|ZP_04718241.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|240014513|ref|ZP_04721426.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240113728|ref|ZP_04728218.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|240116471|ref|ZP_04730533.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|240121035|ref|ZP_04733997.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
 gi|240125067|ref|ZP_04737953.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|254494482|ref|ZP_05107653.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268599798|ref|ZP_06133965.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268602141|ref|ZP_06136308.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268683663|ref|ZP_06150525.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|193933121|gb|ACF28945.1| AlaS [Neisseria gonorrhoeae NCCP11945]
 gi|226513522|gb|EEH62867.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268583929|gb|EEZ48605.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268586272|gb|EEZ50948.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268623947|gb|EEZ56347.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
          Length = 874

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 859 PEMLASAEGWL 869


>gi|260441692|ref|ZP_05795508.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 874

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 859 PEMLASAEGWL 869


>gi|124267510|ref|YP_001021514.1| alanyl-tRNA synthetase [Methylibium petroleiphilum PM1]
 gi|205830143|sp|A2SI90|SYA_METPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|124260285|gb|ABM95279.1| alanyl-tRNA synthetase [Methylibium petroleiphilum PM1]
          Length = 875

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/913 (40%), Positives = 518/913 (56%), Gaps = 56/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ FL+FF+  GH+++ SS ++P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKASEIRSAFLKFFESKGHQIVASSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F L 
Sbjct: 61  TTAQKCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIAYAWELLTEVFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+++W K  G+ A++I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYAEDDEAYEIWNKQVGVPAERIVRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D   E   G      E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHKLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIADGI 290
             VLQ   +NY+IDLF  L+ A++Q            +  + +VI DH+R+ SF I DG+
Sbjct: 241 TAVLQHVHSNYEIDLFVALLAAAKQAVDAAGAGDSDKDSPSLKVIADHIRACSFTIVDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI RR + +   LG  +P    L+  L  +MG AYPEL +A+  + E 
Sbjct: 301 IPGNEGRGYVLRRIARRGIRHGYKLGARKPFFHTLVAELVRQMGEAYPELARAEARVTEV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+ERF +T+  G+ +L+  L+  G  + L+G+ AFKL+DT+G PLD+  D+   RG+
Sbjct: 361 LKQEEERFFQTIANGMEILESALA--GGAKTLDGETAFKLHDTYGFPLDLTADVCRERGV 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F+ A++ QR +ARA      +         L+    AT F GY+ L       
Sbjct: 419 T-VDQAGFDAAMKRQREQARAAGKFKMAAG-------LEYAGAATTFHGYEHLVHEG--- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+   G  V  A +G    +V D TPFYAE+GGQ+GD
Sbjct: 468 -------------------SKVTAVYVDGSAVPSAKAGDDAVIVLDHTPFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R+ + D QK    +F HH  V  G +R    L   +D + R +   NHS T
Sbjct: 509 GGELRNGTSRVIVEDTQKIQADVFGHHGRVVEGEIRVGDVLNARVDGEQRARTVRNHSVT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +  +  RFD  H+ P++ A++  +E  VN  I  N P  
Sbjct: 569 HLMHKALREVLGGHVQQKGSLVNAERTRFDFAHNAPMSDAQIAKVEAIVNAEILANAPTQ 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            R++  E+A   GA  L G KY D VRV+ +        S  LCGGTHV  TG+I L  +
Sbjct: 629 ARVLPMEEAQKLGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVQRTGDIGLFKV 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+ES + AGIRR+EAITG  A +++   +  +  LA  LK +   V GRV  + E+ R L
Sbjct: 683 VAESGVAAGIRRVEAITGDNALAYVQQLEGTVAGLAGALKAAPAEVPGRVAAVLEQLRTL 742

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A  K +L              +  +  ++  +   D+K L+  +D L+ K++S  I
Sbjct: 743 EKELAALKGKLASSQGDGLLAQAVDVKGLKVLAARLEGADAKALRDTLDQLKNKLKSAAI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  + +  K  +   VT D   R  A +L    A+ +GG G GG+P +A +GG +    
Sbjct: 803 VLA-VVEGGKVQLAAGVTADATARVKAGELVNFVAQQVGGKG-GGKPDLAMAGGTDPAGL 860

Query: 886 DQAIAGVASFLKK 898
             A+A VA ++ +
Sbjct: 861 GAALASVAGWVGE 873


>gi|310823694|ref|YP_003956052.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309396766|gb|ADO74225.1| Alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 897

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/919 (40%), Positives = 534/919 (58%), Gaps = 56/919 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL+FF+  GH  + SS L+P NDPTL+FTN+GMV FK++FTG+EK  Y   T
Sbjct: 6   TASQIREAFLQFFEARGHRRVASSPLVPQNDPTLLFTNAGMVQFKDVFTGREKRDYSRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L  
Sbjct: 66  TSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAYAWEFVTRTLGLPI 125

Query: 123 RRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL +TV++       D EAF+LW +  G+  D+I+++   DNFW+M +TGPCGPCSEI 
Sbjct: 126 ERLAVTVFNGEQGVPWDAEAFELWAQQ-GVPRDRILKLGYKDNFWAMGDTGPCGPCSEIH 184

Query: 177 FDQGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQQNKQ-ERFILPKMSIDTGM 228
           + QG+ IP           G + + +R++EIWNLVFMQFE++ K      LPK SIDTG 
Sbjct: 185 YHQGDDIPCSEAAAGRPCQGVACDCDRWLEIWNLVFMQFERKEKDAPLIPLPKPSIDTGA 244

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A+V+Q K +NYD DLF+ ++    ++ G  Y      + RVI DH R+++FLI+D
Sbjct: 245 GLERIASVVQGKRSNYDTDLFQGILGTVSELVGKPYTQEGGASMRVIADHSRAAAFLISD 304

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRRIMRRA+ +  LLG  +     ++  +   M  AYPEL + +  + 
Sbjct: 305 GVQPSNEGRGYVLRRIMRRAIRHGSLLGLEDVFFFKVVDRVIGLMSDAYPELREGRTFVL 364

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E  R E+E F +TLDRG+ L+D  ++ L +  +  L+G   F L+ T+G P D+ Q IL 
Sbjct: 365 EVCRHEEETFRRTLDRGMKLIDEGIAKLKQAGETKLSGAEVFYLHGTYGFPWDLTQIILR 424

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG    D+  F + +E  +   +    G G      ++ +L E+ G ++F+        
Sbjct: 425 ERGFDA-DLDGFWKEME--KEADKNKFGGSGEKAISTVYQTLAERLGTSEFL-------- 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                              +     V+AI++ G  V +A +G+ VE+V D+TPFY E+GG
Sbjct: 474 -------------GYEGEGHEGEGSVRAILKDGHEVGQASAGETVELVLDRTPFYGESGG 520

Query: 527 QLGDTGCAIGDGIRLQIT--DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q GDTG   G G +      DVQ+   G+ VHH  V+ G  +T   +   +D Q R+ + 
Sbjct: 521 QQGDTGQITGHGGKAVAQVTDVQRPVPGLIVHHVQVKEGTFQTGEMVQAGVDNQRRKSIR 580

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV Q GS + PD LRFD +H    T  +L+ +ED VN  + 
Sbjct: 581 ANHSATHLLHKALKMVLGDHVKQAGSVVAPDFLRFDFSHFSVPTPEQLEQVEDIVNTWVR 640

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N    TR+M  ++A  SGA A+ G KY + VRVV+V        S+ LCGGTHV  +G+
Sbjct: 641 ENTEAQTRVMKLDEAKKSGAVAMFGEKYGETVRVVTVHP-----QSTELCGGTHVRRSGD 695

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SE  I +G+RRI A+TG  A  +L   + +L+  A  LK S   +  RVE   
Sbjct: 696 IGLFKILSEGGIASGVRRITAVTGLGALQYLRETERELRKAADLLKTSPKELSKRVEATQ 755

Query: 765 EEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  ++L+    +  ++              ++  +  ++  +   D K  + + D L+ +
Sbjct: 756 KRVKELERKVEEVAVKAQTASNKDVLEQAREVNGMKVLAIRVDPADDKIYRGLADQLRDR 815

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           I+SG++  +G  K+ KA +L+ VT+D++++  +A  L R  AK +GG G GG+  MAQ+G
Sbjct: 816 IRSGVVA-IGGEKDGKALILVAVTKDVVEKGISAGALVREMAKEVGGKG-GGKADMAQAG 873

Query: 879 GPNGNKADQAIAGVASFLK 897
           GP+ +K   A+  +    K
Sbjct: 874 GPDASKLPAALDKLYELTK 892


>gi|302342573|ref|YP_003807102.1| alanyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
 gi|301639186|gb|ADK84508.1| alanyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
          Length = 884

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/908 (40%), Positives = 535/908 (58%), Gaps = 43/908 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL +F   GH+++ SS L P +DP+L+FTN+GMV FK +F GQE+  Y    
Sbjct: 4   SGNELRGKFLAYFASKGHQVVASSPLAPKDDPSLLFTNAGMVQFKQVFLGQEQRPYTRAA 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC RA GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ A+  AW+LLT  F LD 
Sbjct: 64  TSQKCFRASGKHNDLENVGRTPRHHTFFEMLGNFSFGDYFKQDAVTFAWELLTVGFGLDP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L+++V+  D+EA +LW+   G+  ++I+R+   DNFWSM +TGPCGPCSEI  D G  
Sbjct: 124 EKLWVSVHHSDDEAAELWQSEVGVRPERIVRLGDKDNFWSMGDTGPCGPCSEIHIDMGPE 183

Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  G P      +  RY+E+WNLVFMQ+ +    +   LPK SIDTGMGLER+A V+Q  
Sbjct: 184 MGCGRPDCAVGCDCNRYLELWNLVFMQYNRDASGQTTPLPKPSIDTGMGLERIAGVVQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +NYD DLF  +I+ + Q+T   Y  ++   ++ RVI DH R+ +FL+ADGILP+NEGRG
Sbjct: 244 RSNYDSDLFTPIIERACQITQTAYGQSDQADISLRVIADHARACAFLVADGILPSNEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA  + R LG  +P +  +   +  EM  AYP L  A+  +++ + SE+ERF
Sbjct: 304 YVLRRILRRAARHGRKLGAQKPFLHQVAMKVIDEMMGAYPALGDARAFVDKVVTSEEERF 363

Query: 359 GKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TLD GL LL   +  +       L G+VAFKLYDT+G P+D+ + I     L G+D  
Sbjct: 364 NETLDTGLKLLAEAIEEAKAKGQTALPGEVAFKLYDTYGFPVDLTRTICEEEAL-GVDEP 422

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+ +Q++R+RA   G G          L+ K   T F GYD L G           
Sbjct: 423 GFEAAMGQQKTRSRASWKGSGEEGLSGPLAELRAKGFKTAFTGYDGLEG----------- 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V A++  G++VE   +GQK  +V DQTPFY E+GGQ GD+G A G
Sbjct: 472 ------------QGQVVALIVDGQMVERVGAGQKALLVCDQTPFYGESGGQAGDSGRAEG 519

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              +  ++   K    +  H   V  G L     L LT+D+  R + + NH+ATHLLH A
Sbjct: 520 PAGKAVVSTASKPGGDMVAHEITVSEGYLAVGERLNLTVDHGPRGETASNHTATHLLHAA 579

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS ++P  LRFD +H + +T  ++  +E  VN+ +  N+ V    M  
Sbjct: 580 LRQVLGDHVKQAGSMVSPQRLRFDFSHFEAMTPQQMGQVEAMVNEGVLANIAVTVTEMPA 639

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A+ SGA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +V+ESS+
Sbjct: 640 EEALGSGAMALFGEKYGDTVRVVEIPG-----LSKELCGGTHVKRTGDIGLFKLVAESSV 694

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RR+EA+TG+ A + +   +++L   A  LK     +  RV ++    ++ +    +
Sbjct: 695 AAGVRRVEALTGRAALAAVRAMEDELHKAAGLLKARPTELAERVAKLMATLKEREREVEQ 754

Query: 777 RKLQLNVE----DLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            K +L       DL    +   D   +   +    +K L+++ D + +++ SG+++L G 
Sbjct: 755 LKAKLAGGGGGRDLLAGVVNHGDARVLVQKVEVDSAKALRALSDEIIERLGSGVLVL-GA 813

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + E KA +L  V++DL  RF+A ++ +  A ++GGGG GGRP MAQ+GG N +  DQA+ 
Sbjct: 814 AAEGKAFLLARVSKDLQGRFHAGNIVKELAPLVGGGG-GGRPDMAQAGGQNPDALDQAME 872

Query: 891 GVASFLKK 898
             ++ L +
Sbjct: 873 RASAMLAE 880


>gi|167034974|ref|YP_001670205.1| alanyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|166861462|gb|ABY99869.1| alanyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 897

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/896 (41%), Positives = 526/896 (58%), Gaps = 55/896 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 24  MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 83

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  +
Sbjct: 84  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLN 143

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 144 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 203

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 204 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 263

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L+ A+ +  G     +   + +V+ DH+RS  FLIADG+L
Sbjct: 264 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 321

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L
Sbjct: 322 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 381

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 382 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 440

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD          
Sbjct: 441 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDATE------- 486

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GDT
Sbjct: 487 ----------------AQGKIIALYKDGQAVDQLGEGEQGVVVLDRTPFYAESGGQVGDT 530

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K     F+HH +V  G L     +   +D   +   S+NHSATH
Sbjct: 531 GFLQAGAARFDVRDTTKTGG-AFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATH 589

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  + +N  V T
Sbjct: 590 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEALKPEQIKQLEDIVNREVRKNTAVET 649

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+
Sbjct: 650 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 705

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L+
Sbjct: 706 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 765

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +  ++     ++  +   D K L +++D L+ K+   +I+
Sbjct: 766 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 825

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L G   E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG + 
Sbjct: 826 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 879


>gi|240016958|ref|ZP_04723498.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
          Length = 874

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDTDKL 858

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 859 PEMLASAEGWL 869


>gi|268685404|ref|ZP_06152266.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268625688|gb|EEZ58088.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 874

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDTDKL 858

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 859 PEMLASAEGWL 869


>gi|317163606|gb|ADV07147.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 885

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 12  MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 72  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 131

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 132 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 191

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 192 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 251

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 252 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 310

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 311 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 370

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 371 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 427

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 428 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 472 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 517

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 518 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 577

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 578 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 637

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 638 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 693 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 752

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 753 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 812 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 869

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 870 PEMLASAEGWL 880


>gi|293399698|ref|ZP_06643850.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|291609949|gb|EFF39072.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 881

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/911 (40%), Positives = 515/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 8   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 68  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 188 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 248 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 306

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 366

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 367 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 423

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 424 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 468 --------------RQTESKVLALYKDGEQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 514 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 574 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 634 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 866 PEMLASAEGWL 876


>gi|205830254|sp|B1JCG9|SYA_PSEPW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/896 (42%), Positives = 530/896 (59%), Gaps = 55/896 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ V+Q   +NY+IDLF++L+ A+ +  G     +   + +V+ DH+RS  FLIADG+L
Sbjct: 241 RISAVMQHVHSNYEIDLFQNLLSAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + ++ QR RAR+ S           + SL +   AT F+GY+   G      
Sbjct: 418 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDTATDFVGYNATEG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GDT
Sbjct: 465 -----------------QGKVIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  + D  K     F+HH +V  G L     +   +D   +   S+NHSATH
Sbjct: 508 GYLQSGAVRFDVQDTTKTGG-AFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + +T A++K++ED VN  + +N PV T
Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVTPAQIKALEDIVNREVRKNTPVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I + E A   GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+
Sbjct: 627 EITDIETAKRKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L+
Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLIKGNRDNLIDKLSAVLERNRQLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +  ++     ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSSAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L G   E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG + 
Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 856


>gi|317050904|ref|YP_004112020.1| alanyl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316945988|gb|ADU65464.1| alanyl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 893

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/909 (41%), Positives = 537/909 (59%), Gaps = 45/909 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   +R  FL +F+  GH+++ SS LIP +DPTL+FTN+GM  FKNIF G EK  Y   
Sbjct: 11  MNAQQVRQQFLSYFESKGHKVVASSGLIPFDDPTLLFTNAGMNQFKNIFLGNEKRDYNRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ +T+   LD
Sbjct: 71  ATAQKCVRAGGKHNDLENVGVTARHHTFFEMLGNFSFGDYFKREAIEYAWEFITEVMKLD 130

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+++V+ ED+EA  +W+   G+ A++I+R    DNFW M ETGPCGPCSEI +DQG 
Sbjct: 131 RSRLWVSVFREDDEALAIWRDHIGVPAERILRCGEKDNFWQMGETGPCGPCSEIHYDQGP 190

Query: 182 CIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            +P   GG  G   E +RY+EIWNLVFMQ+++Q       LPK SIDTGMGLER+A V+Q
Sbjct: 191 DVPCTEGGPCGVECECDRYLEIWNLVFMQYDRQPDGTLVPLPKPSIDTGMGLERLAAVVQ 250

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANE 295
            +T+NY  DLF  L+       GM Y     +  V+ RVI DHLR+S+FLI+DG +P+NE
Sbjct: 251 GETSNYHTDLFLPLLNRIAADCGMTYTRSASHQDVSMRVIADHLRASTFLISDGAIPSNE 310

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRIMRRAM +A  LG  EP M  L+  +    G A+PE+++ + ++EE +  E+
Sbjct: 311 GRGYVLRRIMRRAMRHANQLGKKEPYMYSLVCLMEEHYGEAFPEIVKNRAMVEEIIYQEE 370

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
            RF  TLD GL +L+ +++ L K     L+G  AFKLYDT+G PLD+  DIL  RG+  +
Sbjct: 371 RRFANTLDHGLAILEEMVAGLQKSAQVALDGQSAFKLYDTYGFPLDLTVDILEDRGIT-V 429

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+EEQ+ RARA    + S T+ +    L E     +F GYD L          
Sbjct: 430 DEAGFYAAMEEQKVRARASWKAVASVTSSEDLR-LIESRHQQEFSGYDFLSAKA------ 482

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S++  +  Q   + +  +G++  ++ D+TPFYAE+GGQ+ DTG 
Sbjct: 483 ----------------SVIGLLDLQENSLSQVRAGEEAWLLLDKTPFYAESGGQVADTGV 526

Query: 534 AIGDGIRLQITDVQKKAE-GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              DG  +      +K+  G+ +H  +V +G      ++  T++ + RR +++NHSATHL
Sbjct: 527 VATDGGDIFEVRSVRKSIGGLHLHRGVVSQGRFSAGDAVTATVNSRRRRNITLNHSATHL 586

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL + +G HV Q GS +    LRFD TH K +T  EL+ +ED VN  +  N  V   
Sbjct: 587 LHAALKSTVGEHVRQAGSLVEDGKLRFDFTHWKGLTPEELQGVEDQVNAQVMANHAVRKE 646

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+A GA AL   KY D VRV+++     G +S  LCGGTHV +TG+I L  I+S
Sbjct: 647 LMTLDDAVARGATALFDEKYGDDVRVITM-----GDYSMELCGGTHVDATGQIGLFKILS 701

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES+I AG+RRIEA TG  A   +    + +   A  LK     +  ++E++ E  R+L+ 
Sbjct: 702 ESAIAAGVRRIEATTGPGALQVVRDLQKTVGDAARMLKTRPEELCAKIEKLLEGNRQLEK 761

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + + +++  + S       +++ V  +         +ELK ++D+ + ++   ++ L
Sbjct: 762 QQRELQEKMSARETSTLQEQVEEVSGVKVLLQSFEGKSVEELKQIVDSAKHQLGEVVVAL 821

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K   ++ V+E L  R  A DL ++ A   GGGG GG+P  AQ+GG    K  +
Sbjct: 822 ASVV-DGKVLFVVGVSEALSQRVRAGDLVKILATTCGGGG-GGKPTFAQAGGREPGKIAE 879

Query: 888 AIAGVASFL 896
           A+      L
Sbjct: 880 ALQKAREHL 888


>gi|323699014|ref|ZP_08110926.1| alanyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323458946|gb|EGB14811.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 879

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/906 (38%), Positives = 522/906 (57%), Gaps = 40/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FLE+F++NGH ++ SS L P +DP+L+FTN+GMV FK +F GQEK  Y   
Sbjct: 1   MKANEIRQRFLEYFERNGHTIVESSPLTPKDDPSLLFTNAGMVQFKKLFLGQEKRDYIRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+  W  LT+E  LD
Sbjct: 61  TTAQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFCWQFLTEELKLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLYIT+Y +D+EA +LW+K++G+  ++I R+   DNFWSM +TGPCGPCSE+ +DQGE
Sbjct: 121 KSRLYITIYKDDDEAGELWRKVAGVPEERIYRLGEKDNFWSMGDTGPCGPCSEVHYDQGE 180

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G        + +R++EIWNLVFMQ++Q     R  LP+ SIDTGMGLER+A V+Q 
Sbjct: 181 EVGCGPNCGIGKCDCDRFLEIWNLVFMQYDQAEDGTRTNLPRPSIDTGMGLERIAAVVQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NY+ DLF+ +I+ +  + G+KY  +       +VI DH R+ +FLI D +LP+NEGR
Sbjct: 241 VHSNYETDLFQSIIKYTADLAGVKYRESEEIDTALQVIADHSRAIAFLIPDQVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+LRR++RRA  + +L+G T   +      +  +MG  Y EL + +  + E +R E+E 
Sbjct: 301 GYILRRLIRRAYRFGKLMGLTGTFLWKTASKVIDDMGGHYKELEETRNFMVEVVRGEEES 360

Query: 358 FGKTLDRG--LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KTLD+G  ++  +          I+ G+  FKLYDT+G P+D +   +  +   G+D 
Sbjct: 361 FAKTLDKGLEMLEEELAELKKAGAAIVPGETTFKLYDTYGFPID-IVRDVAEQQGMGVDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ ++EQ+ R++A   G G      ++ +L E+   ++F GY+ +     +      
Sbjct: 420 AEFDKFMQEQKQRSKAAWKGSGEKDVASVFQTLLEQDVTSEFSGYETMADQSAIAYV--- 476

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                              +  +GE+V+E  +G+   +V + TPFY E+GGQ+GDTG   
Sbjct: 477 -------------------LTPEGEVVDELKAGESGWLVAEVTPFYGESGGQVGDTGAIA 517

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  + D  K ++ +  H  +V  G+L+   +  L +D   R     NH++THLLH 
Sbjct: 518 ARNGKADVLDTVKPSKNLTAHKIVVSEGVLKPGDAAFLNVDRSQRLATMRNHTSTHLLHA 577

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H  Q GS + PD LRFD TH K ++  E+  +E  VN  I + +PV   +M+
Sbjct: 578 ALQKVLGDHAKQAGSLVGPDRLRFDFTHIKGLSPEEIAEVEKLVNQAIFEAIPVTREVMS 637

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A A GA AL G KY D V V+ V        S   CGGTH+ +TG      I SES 
Sbjct: 638 IEAAQAKGATALFGEKYGDTVSVIEVPG-----VSMEFCGGTHLDNTGIAGSFVITSESG 692

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA TG  A + L  + E      + LK    ++  +V ++ ++ + +     
Sbjct: 693 VAAGIRRIEAATGHNAVAWLNERREAASEAGAMLKAQPADLPKKVRDLQQQVKDMNREMK 752

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L             ++  V  ++  +   +   +   MDAL+ K+ SG+I L+  
Sbjct: 753 SLQAKLASGAGRDMMSEVEELNGVKVLAVKVDAPNMGVMLEQMDALRSKLPSGVICLIAP 812

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            ++ K SV + VT+DL  RF A DL +  A  +GGGG GGRP +A++GG N    D+A+A
Sbjct: 813 HEDGKVSVALSVTKDLHSRFKAGDLIKPVAGEVGGGG-GGRPDLARAGGSNPEGIDKALA 871

Query: 891 GVASFL 896
            +   +
Sbjct: 872 KLRELI 877


>gi|26991160|ref|NP_746585.1| alanyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|37999403|sp|Q88EI8|SYA_PSEPK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|24986204|gb|AAN70049.1|AE016644_3 alanyl-tRNA synthetase [Pseudomonas putida KT2440]
          Length = 874

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/896 (41%), Positives = 528/896 (58%), Gaps = 55/896 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  +
Sbjct: 61  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L+ A+ +  G     +   + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD   G      
Sbjct: 418 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDATEG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GDT
Sbjct: 465 -----------------QGKIIALYKDGQSVDQLGEGEEGVVVLDRTPFYAESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K     F+HH +V  G L     +   +D   +   S+NHSATH
Sbjct: 508 GFLQAGAARFDVRDTTKTGG-AFLHHGVVTSGALVIGSPVEAKVDADVQHATSLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  I +N PV T
Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+
Sbjct: 627 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L+
Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +  ++     ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L G   E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG + 
Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 856


>gi|268594178|ref|ZP_06128345.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268547567|gb|EEZ42985.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
          Length = 881

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 8   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 68  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 188 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 248 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 306

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 366

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 367 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 423

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 424 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 468 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 514 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 574 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 634 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 866 PEMLASAEGWL 876


>gi|291045073|ref|ZP_06570781.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|291011076|gb|EFE03073.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 881

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 8   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 68  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 188 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 248 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 306

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 366

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 367 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 423

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 424 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 468 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 514 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 574 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 634 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 866 PEMLASAEGWL 876


>gi|240079700|ref|ZP_04724243.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 874

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 859 PEMLASAEGWL 869


>gi|240122334|ref|ZP_04735290.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268680920|ref|ZP_06147782.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268621204|gb|EEZ53604.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 874

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 859 PEMLASAEGWL 869


>gi|205830257|sp|A5W0D9|SYA_PSEP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/896 (41%), Positives = 528/896 (58%), Gaps = 55/896 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  +
Sbjct: 61  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L+ A+ +  G     +   + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD   G      
Sbjct: 418 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDTTEG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD+
Sbjct: 465 -----------------QGKIIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K     F+HH +V  G L     +   +D   +   S+NHSATH
Sbjct: 508 GFLQAGAARFDVRDTTKTGG-AFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  I +N PV T
Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+
Sbjct: 627 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L+
Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +  ++     ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L G   E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG + 
Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 856


>gi|313668028|ref|YP_004048312.1| alanyl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313005490|emb|CBN86926.1| alanyl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 874

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/911 (40%), Positives = 517/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF++L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQNLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           PANEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L  +   T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYEGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTEATVLALYKNGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQDQERLVKDIITETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K +  I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSEQAIV 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDVEKL 858

Query: 886 DQAIAGVASFL 896
              I  +  ++
Sbjct: 859 PAMIDSMKDWV 869


>gi|325271425|ref|ZP_08137952.1| alanyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324103458|gb|EGC00778.1| alanyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 874

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/896 (41%), Positives = 527/896 (58%), Gaps = 55/896 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L+ A+ +  G     +   + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELTSQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KAEEEQFAKTLEQGLRILEQDLAQLQ-GAVVPGDVVFKLYDTYGFPMDLTADIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD   G      
Sbjct: 418 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDATEG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD+
Sbjct: 465 -----------------QGKIIALYKDGQSVDQLGVGEQGVVVLDRTPFYAESGGQVGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K     F+HH +V  G L     +   +D   +   S+NHSATH
Sbjct: 508 GYLQAGAARFDVRDTTKTGG-AFLHHGVVTSGALLIGAPVEAKVDADVQHATSLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + +   +LK +ED VN  + +N PV T
Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQLKQLEDIVNREVRKNTPVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + E A A GA AL G KY D VRV+++    GG  S  LCGG H   TG+I L  I+
Sbjct: 627 ELTDIETAKAKGAMALFGEKYGDTVRVLTM----GGDFSVELCGGIHAKRTGDISLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L+
Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +  ++     ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L G   E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG + 
Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 856


>gi|317154429|ref|YP_004122477.1| alanyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944680|gb|ADU63731.1| alanyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 879

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/906 (40%), Positives = 523/906 (57%), Gaps = 40/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FLE+FQ+N H ++ SS LIP +DPTL+FTN+GMV FK +F GQEK  Y   
Sbjct: 1   MHAAEIRQRFLEYFQENNHAIVESSPLIPKDDPTLLFTNAGMVQFKRLFLGQEKREYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+  W  LT+E  L 
Sbjct: 61  TTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRYCWQFLTEELKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLYIT+Y +D+EA +LW+K++G+  ++I R+   DNFWSM +TGPCGPCSE+ FDQGE
Sbjct: 121 KDRLYITIYKDDDEAGELWQKVAGVPIERIYRLGEKDNFWSMGDTGPCGPCSEVHFDQGE 180

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G        + +RY+EIWNLVFMQ++Q     R  LP+ SIDTGMGLER+A V Q 
Sbjct: 181 HVGCGPECGIGKCDCDRYLEIWNLVFMQYDQAEDGTRTPLPRPSIDTGMGLERIAAVCQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NY+ DLF+ +I+ + ++ G+KY  N       +VI DH R+ +FLI D +LP+NEGR
Sbjct: 241 VASNYETDLFQSIIRYTAELAGVKYRENQEIDTALQVIADHSRAIAFLIPDQVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+LRR++RRA  + +L+G TEP +      +  +MG  + EL  +K  + E +R E+E 
Sbjct: 301 GYILRRLIRRACRFGKLMGLTEPFLWKTASKVVDDMGGHFSELRDSKEFMIEVVRGEEEG 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KTLD+GL +L+  L+ L   +  I+ GD AF+LYDT+G P+DI++D+   +G++ +D 
Sbjct: 361 FAKTLDKGLDMLEAELAELTAAKAAIVPGDTAFRLYDTYGFPIDIVRDVAERQGMS-VDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+  ++EQ+SR++A   G G      ++ +L E+   + F GY+ +     +      
Sbjct: 420 PGFDALMQEQKSRSKAAWKGSGDKDVAAVFHTLLEQGITSGFTGYETMADQSEITHVLSP 479

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                  G +VE   +G    VV   TPFY E+GGQ GDTG   
Sbjct: 480 A----------------------GAVVERLAAGDTGWVVTRSTPFYGESGGQTGDTGEIA 517

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               R  +TD  K ++ +  H   + +G L+   S+ LT+D   R     NH+ THLLH 
Sbjct: 518 ASSGRGAVTDTVKPSQSLTAHKVEMAQGELKPGNSVFLTVDRGQRLATMRNHTVTHLLHA 577

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H  Q GS + PD LRFD TH K +T  E+  +E  VN  I   +PV   +M+
Sbjct: 578 ALQKVLGDHARQAGSLVGPDRLRFDFTHIKGLTVEEIGRVETLVNQSILDAIPVSREVMS 637

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A   GA AL G KY D V V+ V        S   CGGTH+ +TG      IVSES 
Sbjct: 638 IEQAQTKGATALFGEKYGDTVSVIEVPG-----VSMEFCGGTHLDNTGIAGSFVIVSESG 692

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA TG  A ++   +       +S LK     +  RV  + ++ + +     
Sbjct: 693 VAAGIRRIEAATGGNAIAYFNERRAAAAEASSMLKAQPAELPARVRALQQQVKDMAREMK 752

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + + +L             +I  V  ++  +   D   +   MDAL+ K+ S I+ LV  
Sbjct: 753 QLQTRLASGTGRDMLAEAQQIGGVTVLAVEVEAPDMNVMLEQMDALRSKLPSAIVCLVAG 812

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + K SV + VT+DL  RF A +L +  A  +GGGG GGRP +A++GG + +    A+A
Sbjct: 813 HADGKVSVALSVTKDLHGRFKAGELIKPVAAEVGGGG-GGRPDLARAGGTDASGIKNALA 871

Query: 891 GVASFL 896
            +   +
Sbjct: 872 KLKELV 877


>gi|298529109|ref|ZP_07016512.1| alanyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510545|gb|EFI34448.1| alanyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 882

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/909 (42%), Positives = 559/909 (61%), Gaps = 41/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL+FFQ N H ++PSSSLIP +DP+L+FTN+GMV FK +F GQEK  Y  
Sbjct: 1   MLSAAEIREKFLKFFQDNHHTVVPSSSLIPADDPSLLFTNAGMVQFKKVFLGQEKRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKERAI LAW  LT+E  L
Sbjct: 61  AVTSQKCLRVGGKHNDLENVGRTRRHHTFFEMLGNFSFGDYFKERAIDLAWTFLTRELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L+IT++ +D++A  LW++++G+S D+I R+   DNFWSM +TGPCGPCSE+ +DQG
Sbjct: 121 ERDKLFITIFADDDDAHGLWQEVAGVSPDRIYRLGEKDNFWSMGDTGPCGPCSEVLYDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +RY+EIWNLVFMQ+++  +     LP+ SIDTGMGLER++ V Q
Sbjct: 181 EGMSCGPDCAIGVCDCDRYLEIWNLVFMQYDRDQEGNLNPLPRPSIDTGMGLERISAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +NYD DL K LI  + + +G +Y  + ++ V   VI DH RSS+F+IADGILP+NEG
Sbjct: 241 GVYSNYDTDLLKSLITDTARKSGKEYGRDRDDDVALAVIADHARSSAFMIADGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGY+LRR++RRA  + R LG  EP +   +  +  +M  AYPEL + +  +   +R E+E
Sbjct: 301 RGYILRRLIRRAFRFGRHLGLAEPFLHQTVQVVVQDMSMAYPELEKGRDFMVRVIRQEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL++GLVLL+  L  L   ++  + G+ AFKLYDT+G PLDI+ DI   RG + +D
Sbjct: 361 RFSETLEKGLVLLEEELKKLESLQVNTVPGETAFKLYDTYGFPLDIVNDIAEKRGFS-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + +++QR RARA   G G     ++  SL+ +   T F+GYD L+    +     
Sbjct: 420 EAGFQECMQDQRQRARAAWKGSGDAGLGEVLSSLEGELPQTSFVGYDRLQDQGEI----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V  + Q+G   E    G+K  +V  +TPFYAE+GGQ+GD G  
Sbjct: 475 -----------------VLLVDQEGRSREALSQGEKGWLVASRTPFYAESGGQVGDRGRI 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                +  + D Q +A G+  H   V RG +     + LT+D   R   + NH+ATHLLH
Sbjct: 518 QAARGQAMVRDTQDQAAGVVAHEVEVSRGEVHKGDVVDLTVDEGRRVATARNHTATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +    LRFD TH + +T+ E++ IE+ VN  I  +  V  R+M
Sbjct: 578 LALRRVLGEHVHQAGSLVDEKRLRFDFTHIQALTAEEMERIEEEVNAAILSDYQVQVRVM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A+  GA AL G KY D+VRVVSV     G  S  LCGGTH+ ST +     +VSES
Sbjct: 638 DYSQAVQEGAIALFGEKYTDKVRVVSV-----GNISMELCGGTHLDSTAQAGTFCLVSES 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ +G+RRIEA+TG  A ++  G  + + SL   LKV+   +V +V+ + E+ R+L   +
Sbjct: 693 AVGSGMRRIEALTGWDALNYWRGMRKSVTSLQETLKVAPDQLVDKVQALQEQMRELAREN 752

Query: 775 AKRKLQLNVE---DLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                +++ E   D++  K  +  V  ++  +   D + L+S+MD ++ K+ +G+ ML G
Sbjct: 753 KALSQKISAEQGRDIASEKKMVGRVPLVARKVDVGDVEGLRSLMDDIRSKLDTGVAML-G 811

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + K ++L+ V++DL + F A +L +  AK + GG GGGRP +AQ+GG +    D+AI
Sbjct: 812 TRNKGKPTLLLYVSKDLHENFTAPELIKEVAKEIKGG-GGGRPDLAQAGGSDAQGLDRAI 870

Query: 890 AGVASFLKK 898
             +   L +
Sbjct: 871 ERLEEILAE 879


>gi|240117118|ref|ZP_04731180.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268602805|ref|ZP_06136972.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268586936|gb|EEZ51612.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 874

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 801 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDTDKL 858

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 859 PEMLASAEGWL 869


>gi|313497736|gb|ADR59102.1| AlaS [Pseudomonas putida BIRD-1]
          Length = 874

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/896 (41%), Positives = 528/896 (58%), Gaps = 55/896 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  +
Sbjct: 61  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L+ A+ +  G     +   + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD   G      
Sbjct: 418 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDATEG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD+
Sbjct: 465 -----------------QGKIIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K     F+HH +V  G L     +   +D   +   S+NHSATH
Sbjct: 508 GFLQAGAARFDVRDTTKTGG-AFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  I +N PV T
Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+
Sbjct: 627 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L+
Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +  ++     ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L G   E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG + 
Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 856


>gi|240127048|ref|ZP_04739709.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 881

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 8   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 68  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 188 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 248 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 306

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 366

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 367 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 423

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 424 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 468 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 514 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 574 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 634 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDTDKL 865

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 866 PEMLASAEGWL 876


>gi|260427849|ref|ZP_05781828.1| alanyl-tRNA synthetase [Citreicella sp. SE45]
 gi|260422341|gb|EEX15592.1| alanyl-tRNA synthetase [Citreicella sp. SE45]
          Length = 906

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/895 (47%), Positives = 561/895 (62%), Gaps = 43/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F+K GHE++PSS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 18  MQSLNDIRSTFLGYFEKQGHEVVPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYKR 77

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI  AW+L+T+E D+
Sbjct: 78  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKSEAIPFAWELVTRELDI 137

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D+EA ++WKK +G+  D+IIRI T+DNFW M  TGPCGPC+EIFFD G
Sbjct: 138 DPKRLLVTVYHTDDEAAEIWKK-TGVPEDRIIRIATSDNFWMMGPTGPCGPCTEIFFDHG 196

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +   GG PGS  E+G+R++EIWNLVFMQ+EQ     R  L   SIDTGMG+ER+A +LQ 
Sbjct: 197 DKYWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRRELAAQSIDTGMGIERVAALLQG 256

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS  VT    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 257 TNDNYSTDLIRSLIEASADVTSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 316

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG+AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 317 VLRRIMRRAMRHAHMLGSKDPVMYRLVPALVRQMGAAYPELVRAQPLIEETLKLEETRFK 376

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L     L G  AFKLYDT+G PLD+ QD L  R    +D   F+
Sbjct: 377 QTLDRGLKLLDEELVSLPAGASLPGATAFKLYDTYGFPLDLTQDALRERERT-VDTDGFD 435

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + +++GAT F+GYD                  
Sbjct: 436 AAMSEQKAKARAAWSGTGEAADLAIWFEIADQHGATDFLGYD------------------ 477

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      +  +V+ G  VE   +G+   VV +QTPFY E+GGQ+GDTG       
Sbjct: 478 -----TETAEGQMLTLVRDGVEVEALEAGETGWVVLNQTPFYGESGGQVGDTGFLRRLED 532

Query: 540 RLQITDVQKKAEG----IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
              + +V    +     I  H   V +G      ++ L +D++ R  +  NHSATHLLH 
Sbjct: 533 EHDMAEVTDTQKMGGGKITAHQVTVRQGRFVKGDAVALEVDHKRRGMIRANHSATHLLHE 592

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS   PD LRFD +H+K +T+ E+  +E  VN  I QN PV TRIM 
Sbjct: 593 ALRRALGPHVAQRGSLNAPDRLRFDFSHAKALTAEEIAQVETEVNAFIRQNAPVTTRIMT 652

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLL 708
            +DA A GA AL G KY D VRVVS+          DG  +S  LCGGTHV  TG+I   
Sbjct: 653 PDDARAIGAQALFGEKYGDEVRVVSMGELAGSGKGGDGKTYSLELCGGTHVRQTGDIGTF 712

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            + SES+  AG+RRIEA+TG+ A + L G+D  L  +   LK    + V RV  + +E R
Sbjct: 713 ALTSESASAAGVRRIEALTGEAAMAELRGRDHALSRIEGLLKAHGPDAVARVAALLDERR 772

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L    A+ +  L +            +  V F++ ++S V  K+L  ++D  + ++ SG
Sbjct: 773 RLDNEVAQLRRDLAMAGGPGEGPELRDVGGVPFVAQVLSGVQGKDLPPLIDEHKARLGSG 832

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            ++L+      K +V   VTEDL    +AVDL + + + LGG GGGGRP +AQ G
Sbjct: 833 AVLLIA-DTGGKVAVAAGVTEDLTGNVSAVDLVKAAVEALGGKGGGGRPDLAQGG 886


>gi|301064400|ref|ZP_07204825.1| alanine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300441482|gb|EFK05822.1| alanine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 880

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/906 (40%), Positives = 530/906 (58%), Gaps = 42/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  FL++F K+ H ++ SSSLIP +DPTL+FTN+GMV FKN F G+    Y   
Sbjct: 1   MNFREIRQQFLDYFSKHDHRIVESSSLIPRDDPTLLFTNAGMVQFKNAFLGENV-GYTRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W+LLT+ + L 
Sbjct: 60  ATAQKCVRAGGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKEEAIRWGWELLTEGYGLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+++VY +D+EA+ +W+K  GL AD+I+R+   DNFW+M +TGPCGPCSEI  DQG 
Sbjct: 120 AEKLHVSVYKDDDEAYDIWQKEIGLPADRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGP 179

Query: 182 CIPGGLPG--SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P      + +RY+EIWNLVF QF++    +   LPK +IDTGMGLER+A V+Q 
Sbjct: 180 SVGCGRPECACGCDCDRYLEIWNLVFTQFDRSPDGKLTPLPKPNIDTGMGLERLAAVIQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NYD DLF+ +I   E ++  KY       V  RVI DH R+ SFLI DGI+P+NEGR
Sbjct: 240 VKSNYDTDLFRDIITRIESLSQKKYGSNERMDVAFRVISDHARAVSFLIGDGIMPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA  + + LG  +  +  +   +   MG  Y EL++A+  I   + +E+ R
Sbjct: 300 GYVLRRIIRRASRFGQALGLEDIFLRSICDHVIELMGRDYGELVRARSFILGVVENEERR 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL   + +L   +  L + E   + G+V FKLYDT+GL +D+++D+     L G+D+
Sbjct: 360 FADTLRYSMKVLREEIEQLREKEKAAIPGEVVFKLYDTYGLAVDLVEDVARDENL-GVDL 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +  A+  QRS ++    G G     K +  L  +   ++F GYD L            
Sbjct: 419 EGYKDAMNRQRSLSQESWKGSGEAAVPKTFRDLLNRNLTSRFTGYDTLE----------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + ++V     V     G K +++ DQT FYAE+GGQ+GDTG  +
Sbjct: 468 ------------AESRILSLVLGDLEVNTIYKGDKAQMILDQTAFYAESGGQVGDTGLIM 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++ +  K  + + VH   +E G L    S+  ++D  +R  ++ +HSATHLLH 
Sbjct: 516 NGIAHFRVENTFKYGQDLIVHEGFLEEGELSVGDSVQASVDTAHRMAVAASHSATHLLHA 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV Q GS + P  LRFD +H   +++  L  +E  VND I +NLP+ TRIM+
Sbjct: 576 ALREILGDHVKQAGSRVAPGRLRFDFSHFTQVSTENLIEVERWVNDRIRENLPLDTRIMD 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +E A+ +GA A+   KY D+VR+V +        S  LCGGTH   TG+I +  I+SE +
Sbjct: 636 KEAAMKTGAMAIFEEKYGDKVRIVDIGE----GVSRELCGGTHTRRTGDIGVFRILSEGA 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + A +RRIEA+TG  A  +   +DE+LK+ A  LKV+   ++ +++ + EE R+ +    
Sbjct: 692 VAANVRRIEALTGASALLYDQERDERLKNAAGLLKVAPDQLIEKLKRLLEEAREKEREIE 751

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +L  E  +       +I  ++ ++  +     KEL+   D ++ ++ SGI++L G 
Sbjct: 752 SLKGRLFTEKSADLMQDVREITGISVVAKELEAETPKELREAADRIKDRLGSGIVLL-GA 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               K  ++  VT+DL +RFNA  + R  + ++GG G GGRP MAQ GG    K  +A  
Sbjct: 811 KNGGKVMLICAVTKDLTNRFNAGQIIRELSGIVGGKG-GGRPDMAQGGGDRPEKLTEAFN 869

Query: 891 GVASFL 896
            + + +
Sbjct: 870 SLETLI 875


>gi|70731848|ref|YP_261590.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|83305855|sp|Q4K843|SYA_PSEF5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68346147|gb|AAY93753.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 874

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/893 (42%), Positives = 527/893 (59%), Gaps = 55/893 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ A+ +  G     +   + +V+ DH+RS  FLIADG+L
Sbjct: 241 RISAVLQHVHSNYEIDLFQSLLDAAAKAIGCT--NDAQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKSQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L    ++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KAEEEQFAKTLEQGLKILEQDLAELK-GSVVPGDVVFKLYDTYGFPMDLTGDIARERNLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RAR+ S           + SL +   AT+F GY    G      
Sbjct: 418 -LDEEGFEREMEAQRVRARSASSFGM------DYNSLVKVDVATEFTGYHATSG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ V A+ ++G+ V+    G++  VV DQTPFYAE+GGQ+GD 
Sbjct: 465 -----------------SAKVVALYKEGQSVDMLSEGEEGVVVLDQTPFYAESGGQIGDC 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K     F+HH ++ +G L     +   +D Q R   S+NHSATH
Sbjct: 508 GYLQAGNARFDVRDTTKTGG-AFLHHGVLAKGSLTVGAPVETQVDAQVRHATSLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + I   ++K++ED VN  I +N PV T
Sbjct: 567 LLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNTPVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY D VRV+S+    GG  S  LCGG H + TG+I LL I 
Sbjct: 627 EETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGDFSVELCGGIHANRTGDIGLLKIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEA+TG  A ++L   +E+LK  A+ +K S+ N++ ++  + E  R L+
Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAATLVKGSRDNLIDKLSAVLERNRLLE 742

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +               +  V  ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSAQAADVKGVKVLAARLDGQDGKALLALVDQLKNKLGRAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           L  + +E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG
Sbjct: 803 LGSVHEE-KVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGG 853


>gi|268595847|ref|ZP_06130014.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268549635|gb|EEZ44654.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 881

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 514/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 8   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 68  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 127

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 128 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 187

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 188 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 247

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 248 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMEEPSLKVIADHIRSCSFLIADGVL 306

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 307 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 366

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 367 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 423

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L      T+F GY           
Sbjct: 424 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYDGQDTEFKGYSE--------- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 468 --------------RQTESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 514 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 574 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 634 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 688

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 689 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 748

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+  +  L  K  + +I
Sbjct: 749 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALRETVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 866 PEMLASAEGWL 876


>gi|242280583|ref|YP_002992712.1| alanyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|242123477|gb|ACS81173.1| alanyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 880

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/906 (40%), Positives = 523/906 (57%), Gaps = 40/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL++F+KNGH ++ SSSL+P +DPTL+FTN+GMV FKN F GQEK  Y   
Sbjct: 1   MKASEIREKFLKYFEKNGHTIVDSSSLVPKDDPTLLFTNAGMVQFKNTFLGQEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+  W  LT+E  L 
Sbjct: 61  TTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFCWGFLTEELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+T+Y +D+EA +LW+K+    A++I R+   DNFWSM +TGPCGPCSE+  DQGE
Sbjct: 121 KDKLYVTIYTDDDEADELWQKVVNFPAERIYRLGEKDNFWSMGDTGPCGPCSEVHIDQGE 180

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G        + +RY+EIWNLVFMQ++Q  +  R  LP+ SIDTGMGLER+  V Q 
Sbjct: 181 DMSCGPNCGIGKCDCDRYLEIWNLVFMQYDQDEEGNRVPLPRPSIDTGMGLERITAVCQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +N++ D+F+ +IQA  +  G+KY+ ++      +VI DH RS +FLI D ILP+NEGR
Sbjct: 241 VQSNFETDIFQPMIQAVAKKAGVKYKEDSEIDTALQVIADHSRSIAFLITDQILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG T+P +      +  +M   +PEL+  K  +   ++ E+ER
Sbjct: 301 GYVLRRLIRRAFRFGRLLGLTDPFLHETTAMVVEQMSGQFPELLDNKDFMARMVKEEEER 360

Query: 358 FGKTLDRG--LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD+G  ++  +          +++G+ AFKLYDT+G PLDI+ + +  +    +D 
Sbjct: 361 FSQTLDKGLIILEEEMEELKKAGKNLISGETAFKLYDTYGFPLDII-NDVAEKQEFEVDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN A++EQ+ RA+A   G G   +  I+  + E      F GY  L     +      
Sbjct: 420 DGFNAAMKEQKDRAKAAWKGSGEKNSGAIFRQVLEAGLKNSFTGYSELTTESRI------ 473

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V  + ++GE +E    G    ++   TPFY E+GGQ+GDTG   
Sbjct: 474 ----------------VNLLSEEGEHLERITQGNGGWIITAATPFYGESGGQMGDTGAVG 517

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++ +  K +  +      V  G L  E    L +  + R     NH+ THLLH 
Sbjct: 518 TLTGNAEVLETVKASADLTASKVFVSEGELLLEQEAKLEVSPETRVATERNHTVTHLLHA 577

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q+GS + PD LRFD TH   +T  E+  +E+ VN  I  + PVV + M+
Sbjct: 578 ALKKVLGDHVKQSGSLVGPDRLRFDFTHIAAMTPEEIGEVENEVNRAILGDTPVVVQEMS 637

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY D VRVV +        S  LCGGTH+ +TGE     I SES 
Sbjct: 638 NDEAAAKGATALFGEKYGDVVRVVEIPG-----ESMELCGGTHLKATGEAGTFVIQSESG 692

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA TG  +   L  Q  ++ + ++ LK + G +  R+  +  + ++L   + 
Sbjct: 693 VAAGIRRIEAATGWNSLKFLQEQRAEVVTSSAMLKAAPGQLADRIAALQSQVKELTKAND 752

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K + +L          S  +I  V  ++  +   + K L+   DAL+ K+ SGI  LV  
Sbjct: 753 KLQSKLASGAGADLMSSIEEIGGVKVLAAKLEVTNVKALRDQADALRSKMDSGIFCLVAQ 812

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + K S++I VT+DL DRF A  L +  A  +GGGG GGRP MAQ+GG N    ++A A
Sbjct: 813 VDDNKVSLIIAVTKDLHDRFQAGALIKPVAAEVGGGG-GGRPDMAQAGGTNPAGIEKAFA 871

Query: 891 GVASFL 896
            +   +
Sbjct: 872 TLKKLV 877


>gi|309378363|emb|CBX23009.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 874

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/911 (40%), Positives = 516/911 (56%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI LAW+ LT     +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHLAWEFLTSPKCLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+E + +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLPTVYAEDDEPYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           PANEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+     + L G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALAK--GGKTLGGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +        A      +  + K    L  +   T+F GY           
Sbjct: 417 EPDEAGFEREM-------EAQRARARAAQSFKANAQLPYEGQDTEFKGYSE--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 461 --------------RQTEAKVLALYKNGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVSVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L V            +     ++  I    +  L+ ++  L  K +  I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSEQAIV 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDVEKL 858

Query: 886 DQAIAGVASFL 896
              I  V  ++
Sbjct: 859 PAMIDSVKDWV 869


>gi|119505423|ref|ZP_01627496.1| Phosphoserine aminotransferase, Methanosarcina type [marine gamma
           proteobacterium HTCC2080]
 gi|119458701|gb|EAW39803.1| Phosphoserine aminotransferase, Methanosarcina type [marine gamma
           proteobacterium HTCC2080]
          Length = 866

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/901 (41%), Positives = 532/901 (59%), Gaps = 46/901 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F++ GH  + SSSL+P +DPTL+FTN+GM  FK  F G E   YQ  
Sbjct: 1   MKTAEIREAFLSYFEEQGHTRVESSSLVPHDDPTLLFTNAGMNQFKETFLGLETRAYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT+  +L 
Sbjct: 61  CTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTEVLELP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++TV+  D+EA  +W    G+    + R+   DNFW M +TGPCGP SEIF+D G 
Sbjct: 121 KERLWVTVHISDDEAAAIWIDEIGIDPSCLSRL-DEDNFWQMGDTGPCGPSSEIFYDHGA 179

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS+++  +RYIEIWNLVFMQF +    E   LP  S+DTGMGLER+A VLQ  
Sbjct: 180 HVPGGPPGSADDDLDRYIEIWNLVFMQFNRDGAGELHPLPAPSVDTGMGLERIAAVLQHV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI+A+     +        + RVI DHLRS +FLI DG++P+NEGRGYV
Sbjct: 240 HSNYEIDLFQTLIKATASALAVAD--LEEKSLRVISDHLRSCAFLITDGVVPSNEGRGYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG T+P    L+P L  EMG+AYP+L  ++  I + LR+E+++F +
Sbjct: 298 LRRIIRRAVRHGNKLGATKPFFAALVPVLVAEMGAAYPDLQASESAIVKALRAEEDQFAR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD G+ +L+  LS L    +L G++ F+LYDT+G P+D+  DI   R L  +D+  +++
Sbjct: 358 TLDNGMAILEEALSGLQ-GAVLPGELVFRLYDTYGFPVDLTNDIARERNLT-LDVEGYDE 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+ +QR R++       SG+ +  +       G TQF GYD   G               
Sbjct: 416 AMAQQRKRSQE------SGSFKVDYNESVTIPGETQFTGYDSTEG--------------- 454

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S  + A++ +GE+ +   +G++  VV + TPFY E+GGQ+GD G   G+  R
Sbjct: 455 --------SGTILALLAEGEMAQSLAAGERGVVVLNSTPFYGESGGQVGDCGLLQGESSR 506

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +TD  K     F  H  V  G L     L  T+D + R+++ +NHSATHLLH AL  +
Sbjct: 507 ADVTDTTKAQGHHFH-HVHVTSGSLNVGDVLAATVDNELRQRIRLNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS +  + LRFD +H + +++A++  +   VN+ I  N    T++M+ + A+
Sbjct: 566 LGDHVVQKGSLVDSERLRFDFSHGEAVSAAQIDELTQIVNEQIRGNSATTTQLMDMDSAV 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A+GA AL G KY D VRV+S+        S  LCGGTHV  TG+I LL +  ES + AG+
Sbjct: 626 AAGATALFGEKYGDEVRVLSMGS---EGFSVELCGGTHVDRTGDIGLLLVTGESGVAAGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEAITGQ A    +   +++  +A  LK +   VV +   +  E R+L+   A+ K +
Sbjct: 683 RRIEAITGQAALVQSLASSQRVVDVAEVLKATPAAVVEKAGVLRSEVRELEKEVARLKQK 742

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S  ++  +  ++  I   D   L+  +D  + K+ + +++L  +  + K
Sbjct: 743 LATSSGGDLTQSAVEVGGIKVLATQIEGADVATLRDTLDQCKNKLGTAVVLLAAVEGD-K 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+D+ DR  A D  +  A  LGG G GGRP MAQ GG +      A+A V  +
Sbjct: 802 ISLVAGVTKDVTDRVRAGDAIKEFAGRLGGKG-GGRPDMAQGGGTDVAGLPAALAAVPDW 860

Query: 896 L 896
           +
Sbjct: 861 V 861


>gi|325267938|ref|ZP_08134587.1| alanine--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324980624|gb|EGC16287.1| alanine--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 873

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/913 (39%), Positives = 528/913 (57%), Gaps = 58/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y+  
Sbjct: 1   MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +V+ DH+RS SFLIADG++
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVVADHIRSCSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+       L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALTK--GSNKLDGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN+ +        A      +    K    L      T+F GY+          
Sbjct: 417 DLDEEGFNREM-------EAQRARARAAQNFKANAQLDYTGADTEFTGYE---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ +  E V+E  +G+   VV +QTPFYAE+GGQ+GD 
Sbjct: 460 -------------KRSQETKIIALYKGSEAVDELQAGEAGVVVLEQTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R ++ D QK    +      V  G L+   ++   ID   R  +  NHS TH
Sbjct: 507 GFIVSGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRNSIMRNHSVTH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS    +  RFD++H + I++ E+  +E  VN  I  N+PV  
Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKV 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ EDA  SGA  L G KY D VRV+++     G +S+ LCGGTHV+ TG+I    I+
Sbjct: 627 ETMSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AGIRR+EAITGQ A +    Q+  +K++ + +K     +V+ +++      + L
Sbjct: 682 SEGGIAAGIRRVEAITGQAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V        +   +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIDAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG + ++ 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTNKVKAGDLIKFAAEQI-GGKGGGRPDLAQAGGTDASQV 858

Query: 886 DQAIAGVASFLKK 898
              +    S++++
Sbjct: 859 GAMLDSAESWVRE 871


>gi|238897262|ref|YP_002922939.1| alanyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465017|gb|ACQ66791.1| alanyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 875

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/909 (43%), Positives = 543/909 (59%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF+  GH+++ SSSLIP +DPTL+FTN+GM PFKNIF G + P +   T
Sbjct: 4   STADIRQKFLDFFKSKGHQVVSSSSLIPHHDPTLLFTNAGMNPFKNIFLGIQDPDFSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI  AW+LLT  + F L
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIYFAWELLTGSEWFHL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RLY+TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPCS
Sbjct: 124 PKDRLYVTVYSTDDEAYNIWADEIGIPRERIIRIGDNKGAAFCSDNFWQMGETGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ + GGLPGS  EEG+RYIEIWN+VFMQF +        LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHLWGGLPGSPEEEGDRYIEIWNIVFMQFNRLADGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           MA VLQ  ++NY+IDLF+ LI   ++VTG     ++  + RVI DH+R+ +FLI DG+ P
Sbjct: 244 MAAVLQNVSSNYEIDLFRDLISGVKKVTGATD--DSNPSLRVIADHIRACAFLIFDGVRP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG  +P    LL +L   M     +L   +++IE+ L+
Sbjct: 302 SNEGRGYVLRRIIRRAIRHGNKLGVKKPFFYQLLTSLIGVMKPITDQLKHHQVMIEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E F  TL+RGL LLD  L HL   + L G+ AF LYDT+G PLD+  D+   R L  
Sbjct: 362 TEEELFSHTLERGLSLLDKKLDHLK-GDTLEGETAFLLYDTYGFPLDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID ++F+Q + EQR+RAR              +         T+F GY+ L+        
Sbjct: 420 IDEVTFHQKMSEQRARARQA------SAFSTDYNKFIRVAHHTEFCGYEQLQQ------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           ++++KA+  +GE + E  +GQ+  V+ D+TPFYAE+GGQ+GD G
Sbjct: 467 ----------------TTVIKALFFRGEEINEIHAGQEALVILDKTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     ++D QK      VH     +G LR    +   ++ + R  +  NHSATHL
Sbjct: 511 YLKSTTAHFMVSDTQKYG-QAIVHLGQPSKGSLRISDHIQACVNNKVRDHIRSNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +     RFD +H K +T  E++++E  VN  I QN  + T+
Sbjct: 570 LHAALRQVLGKHVVQKGSLVNEKCCRFDFSHFKMMTPDEIENVESLVNQQIRQNHLIETQ 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ EDA   GA AL G KY D+VRV+S+     G  S  LCGGTH   TG+I L +I S
Sbjct: 630 IMSLEDAKKKGATALFGEKYEDQVRVLSM-----GDFSIELCGGTHARRTGDIGLFHITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ESS  AGIRRIEAITG+ A + L  Q   L+ LA  LK  +  ++ R+  I +  + L+ 
Sbjct: 685 ESSTAAGIRRIEAITGEEANALLCQQRNVLQDLARLLKSDEKGLIERIGIIIDRNKVLEK 744

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K Q  ++  S       +I ++  +   +  V+   L+ ++D L+ ++ S +I+L
Sbjct: 745 KLQHFKDQEILQKTSLLLKNVKQIKEIKILIAQLDAVEPILLRRMIDDLKNQLGSAVILL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++K  K S +  VT++L  +  A DL    A  + GG GGGR  MAQ+GG N N    
Sbjct: 805 ANVTKN-KISFIAGVTKNLTQQIKADDLIHYIAPKI-GGKGGGRADMAQAGGTNINSLAT 862

Query: 888 AIAGVASFL 896
            +A    ++
Sbjct: 863 VLAEAEKWI 871


>gi|332184146|gb|AEE26400.1| Alanyl-tRNA synthetase [Francisella cf. novicida 3523]
          Length = 865

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 527/900 (58%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKRDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI + DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PIEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSTDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QV   +    N  + RVI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVINARDI--NSPSLRVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +     L+  L  +MG AYP+LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAVRHGNKLGANQIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L   + ++G+VAFKLYDT+G P D+  D+   +GL  +D   F 
Sbjct: 359 KTIENGIKIFDAEIENLK-GDTVSGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQVFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + +L      ++F GY  L                
Sbjct: 417 AQMQVQKQRSKEA------GKFNVDYNTLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I    ++V+         VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYHDSQLVDSITEEASAVVVLDKTPFYAESGGQVGDKGVLEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFIVEDVQKSGE-AILHIGKLVKGRLNVNDELTAQVSDQPRLATAANHSATHLLHKALKV 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSH  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 ILGSHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVATIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SES I +G
Sbjct: 627 KSLGAQALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISESGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +      AK K 
Sbjct: 682 IRRIEAVTADKAIRHTFTNENKIVAIKDSLKANDANLIDKLKSMLEQIKNQDKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L+  +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRDKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  +     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNAMTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|114800099|ref|YP_761420.1| alanyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123322977|sp|Q0BYM3|SYA_HYPNA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114740273|gb|ABI78398.1| alanyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 881

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/906 (49%), Positives = 587/906 (64%), Gaps = 35/906 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR TFL FF+KNGH   PS+ L+P NDPTL+F N+GMVPFKNIFTG EKP    
Sbjct: 1   MNGVNDIRETFLGFFEKNGHARRPSAPLVPQNDPTLLFVNAGMVPFKNIFTGAEKPFAPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A+ LAW+L+TKE+ L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAVALAWELVTKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY EDEEA  +WKK++GL   +IIRI T+DNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 DAKRLLVTVYAEDEEAPAIWKKVAGLDDSRIIRIATSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG P    E+G+R+IEIWNLVFMQFEQ    +R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DKVAGGPPGSPDEDGDRFIEIWNLVFMQFEQHEGGKRTNLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLF+ LI A E+V G K  G+   + RVI DHLR+S+FL+ADGILP+NEGRGY
Sbjct: 241 VHNNYDIDLFRALIAAEEEVYGQKASGDKTASFRVIADHLRTSAFLVADGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  +LG  EP M  L+PAL  EMG AYPEL +A++ IE  +  E+ RF 
Sbjct: 301 VLRRIMRRAMRHGHMLGAREPQMHRLVPALVAEMGKAYPELGRAQVAIEAAIEQEEARFQ 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL LLD   S L   E L GDVAF+L DT G PLD+ QDIL  RG   +D+  F 
Sbjct: 361 RTLGNGLSLLDKAASELSPGEALPGDVAFRLSDTFGFPLDLTQDILRGRG-IEVDVDGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            AL+ QR  +RA     G   TE+IWFS++++ G T+F GY    G              
Sbjct: 420 TALDAQRETSRAGGFSSGDQATEEIWFSVRDEKGPTKFTGYSSTAG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + AI   G ++E   +G   E+VFD TPFYAE+GGQ GD G  + +  
Sbjct: 466 ---------EGRLIAIAAGGALIETVTAG-PAELVFDATPFYAESGGQAGDHGEIVFEDG 515

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R  + DVQK+A  + VH   +  G ++T M   ++++   R+ +  NHSATHL+H AL 
Sbjct: 516 ARFVVRDVQKRAGDLHVHIGELVSGSVKTGMKAQMSVNAARRKAVMANHSATHLMHAALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +  D  RFD +H  P+T+A+L++IED VN  I  N+    ++   + 
Sbjct: 576 KVLGPHVTQKGSLVEADRFRFDFSHGAPVTAAQLEAIEDEVNAQIRANIETGIKVTTPDK 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           AI +GA AL G KY D VRV+S+    E G  +S  LCGG HVS +G+I +  I+SE  +
Sbjct: 636 AIEAGALALFGEKYGDEVRVLSMGDAGEGGRPYSVELCGGIHVSRSGDIAVFTILSEGGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AGIRRIE  TG  A ++L G+ +    +A  LKV   ++  RV  + EE R L+   ++
Sbjct: 696 SAGIRRIEGATGAEALAYLKGRAQIAADVAESLKVPLKDLPRRVASLTEERRTLERELSE 755

Query: 777 RKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L +            I  VN ++ +   V  KEL++++D  + KI SG+++     
Sbjct: 756 AKRKLAMGGGGGAPAGPEVINGVNLIARVAEGVGGKELRALVDEAKSKIGSGVVV-FVGV 814

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
              KA V I VT+DL ++F+AV+L + +A  +GG GGGGRP MAQ+GGP+G+KA++A+  
Sbjct: 815 DGGKAGVAIGVTKDLTEKFSAVELVKAAAAAIGGQGGGGRPDMAQAGGPDGDKANEALEA 874

Query: 892 VASFLK 897
           V + LK
Sbjct: 875 VRAALK 880


>gi|205830253|sp|B0KR43|SYA_PSEPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/896 (41%), Positives = 526/896 (58%), Gaps = 55/896 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  +
Sbjct: 61  VSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 TEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++L+ A+ +  G     +   + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCS--NDGQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L
Sbjct: 299 PSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P+D+  DI   R L 
Sbjct: 359 KAEEEQFAKTLEQGLRILEQDLAQLK-GDVVPGDVVFKLYDTYGFPMDLTADIARERELT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD          
Sbjct: 418 -IDEAGFEREMDAQRERARSASAFGM------DYNSLVKVDSATEFLGYDATE------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GDT
Sbjct: 464 ----------------AQGKIIALYKDGQAVDQLGEGEQGVVVLDRTPFYAESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K     F+HH +V  G L     +   +D   +   S+NHSATH
Sbjct: 508 GFLQAGAARFDVRDTTKTGG-AFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  + +N  V T
Sbjct: 567 LLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEALKPEQIKQLEDIVNREVRKNTAVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+
Sbjct: 627 ELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L+
Sbjct: 683 SEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLE 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +           +  ++     ++  +   D K L +++D L+ K+   +I+
Sbjct: 743 KQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVIL 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L G   E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG + 
Sbjct: 803 L-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDV 856


>gi|251798323|ref|YP_003013054.1| alanyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247545949|gb|ACT02968.1| alanyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 877

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/910 (38%), Positives = 524/910 (57%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L FF+   H + PS+SL+P NDP+L++ N+GM P K  F G+  P    +
Sbjct: 1   MKASEIRSKWLSFFESKRHHIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVIPDNPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  +   
Sbjct: 61  TNSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTSKEWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  RL +TVY EDEEA+K W +  GL A++I ++   +NFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPDRLSVTVYPEDEEAYKYWNEKIGLPAERIYKLD--ENFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           GE              E ER++E+WNLVF QF          LP  +IDTG GLER A++
Sbjct: 174 GEKYGDLNDPECWPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 233

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPAN 294
           LQ+  +N+D DLF  +I+ + ++  +KY  N+      +VI DH+R+ +F + DG++P+N
Sbjct: 234 LQDVDSNFDTDLFIPIIERTCEIASVKYHVNDEHDVALKVIADHIRTVAFAVGDGVMPSN 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY++RR++RRA+ Y + +G   P +  L   +   MG  YPE++  +  IE  +R+E
Sbjct: 294 EGRGYIIRRLLRRAVRYGKTIGIDRPFLYELTSVVGEVMGVYYPEVVDKREFIERVIRTE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  GLV+L  +++   K     + G+ AF+LYDT+G P D+ +D     G+  
Sbjct: 354 EERFHETLSDGLVMLSDLVATARKAGTTEIGGEDAFRLYDTYGFPFDLTEDFASENGMT- 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F+ A+E QR RARA     G    +     L +    ++F+GY+ L         
Sbjct: 413 VDREGFDAAMEAQRERARAARQDTGGMNVQG--GPLADFTVKSEFVGYNEL--------- 461

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + + AIV +  +V+    G +V V+ D+TPFYAE+GGQ+GD G
Sbjct: 462 --------------VTEAQITAIVHEDSLVDLVGEGSRVLVLLDRTPFYAESGGQIGDKG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G+G  LQ+ DV K   G  VHHA+V  G +RT  ++   +    R  +  NH+ATHL
Sbjct: 508 TIVGNGFTLQVEDVTKAPHGQSVHHAVVASGTVRTGETVEAVVIRSVREDVIKNHTATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H   IT  EL  IE  VN+ I    PVV  
Sbjct: 568 LHKALKEVLGDHVNQAGSLVQADRLRFDFSHFGSITPEELTEIERKVNEQIWIGTPVVIE 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                +A A GA AL G KY D VRVV V     G +S  LCGG HV++T +I +  +VS
Sbjct: 628 SKQIAEAKAMGAMALFGEKYGDIVRVVQV-----GNYSIELCGGCHVANTSQIGMFKLVS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I +G+RRIEA+TG+ A S++ GQ + LK  ++ LK +  +V  R+E ++ + ++L  
Sbjct: 683 ESGIGSGVRRIEAVTGRHAYSYMEGQLDLLKQASALLKANNNDVPKRIEALFAQVKELGR 742

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   + +L+  +      +   + DV  +S  +S      L+ + D L+ K+ S +I+L
Sbjct: 743 ENESLQAKLSRIEAGSLEQNAKTVGDVTVLSAKVSAPTMDALRGIADELKAKLPSAVIIL 802

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             + +E K S++  V+ DL+ + F+A  + + +A    GG GGGRP MAQ+GG + +K D
Sbjct: 803 GAV-QEDKVSLVAAVSADLVKKGFHAGKIVKEAAAHC-GGSGGGRPDMAQAGGKDASKLD 860

Query: 887 QAIAGVASFL 896
           +A+      +
Sbjct: 861 EALKLAEELV 870


>gi|319941405|ref|ZP_08015733.1| alanyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319805025|gb|EFW01855.1| alanyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 875

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/912 (39%), Positives = 521/912 (57%), Gaps = 56/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             V+ IR TFL+F++  GH ++ SS ++P NDPTL+FTN+GM  FK+++ G +   Y+  
Sbjct: 1   MKVADIRRTFLKFYESKGHTIVASSPVVPGNDPTLLFTNAGMNQFKDVYLGFDHRPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F L 
Sbjct: 61  TTSQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIHFAWELLTEHFHLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 121 PEKLWVTVYAEDQEAYDIWHKEVGIPADRIVRIGDNKGARYMSDNFWMMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RY+EIWNLVFMQF +  K E   LP+ SIDTGMGLER+
Sbjct: 181 IFYDHGPSVQGGPPGSPEEDGDRYMEIWNLVFMQFYRDEKGEMHKLPRPSIDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASE---QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ATVLQ   +NYDIDLFK+L+ A++   +         N  + +VI DH+R+ +F +ADG+
Sbjct: 241 ATVLQGVHSNYDIDLFKNLLAAAKAAVESVSTVPADINSPSLKVIADHIRACAFCVADGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGR YVLRRI RRA+ +   LG   P    L+ A+  EMG AYPEL+  +  IE+ 
Sbjct: 301 VPGNEGRAYVLRRICRRALRHGYKLGARGPFFYKLVDAVRKEMGEAYPELMNHE--IEKV 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           + +E+ RF +TL +G+ +LD  ++   K  +L GDV FKL+DT+G P D+  D+   RG+
Sbjct: 359 IEAEERRFLQTLSKGMDILDAAIAE-NKTGVLPGDVVFKLHDTYGFPADLTADVCRERGI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           +            ++ +   +    +  G        L      T F GY+ L       
Sbjct: 418 SVNTAEFDAAMERQRAAARASAKFKMAQG--------LDYTGADTVFTGYETLTEKD--- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   GE V+   +G +  VVF++TPFYAE+GGQ+GD
Sbjct: 467 -------------------AEVVALYANGEPVDRVEAGSECVVVFNRTPFYAESGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G A      L++ D  +    +      V  G +       L +D   R   + NHS T
Sbjct: 508 QGEAKNATAILKVLDTFRVKAAVTGLQCHVAEGHVAVGDKFDLAVDEARREATARNHSVT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL T+LG  V+Q GS +TP+  RFD ++ KP+T+ ++  +E  VN  I +N PV 
Sbjct: 568 HLMHFALRTVLGDKVAQKGSLVTPESTRFDFSYGKPVTAEQIAEVERIVNAQILKNTPVQ 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           TR++  E+A  +GA  L G +Y + VRV+ +        S+  CGGTHV +TG+I    +
Sbjct: 628 TRVLPIEEAKKTGAVMLFGERYGEVVRVLDIG------KSTEFCGGTHVKATGDIGFFKV 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSES I AG+RRIEA+TG  A S +   +  L + A   K     V  +  +     R L
Sbjct: 682 VSESGIAAGVRRIEAVTGMNALSWVQNTESLLAATAREFKAPVSEVPVKAADAIATIRTL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K Q+  +           +  V  +   +   D+K L+  MD ++ K+ S + 
Sbjct: 742 EKGIDQLKSQMAAKAGDALIAEACDVKGVKVLLARLDGADAKALRETMDKVKDKLGSAVA 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  ++ E +  +   VT+DL  R  A +LA   A +LGG G GG+P +A +GG +  K 
Sbjct: 802 VLASVTGEDRVQLAAGVTKDLTGRVKAGELAGFVAGLLGGKG-GGKPDLAMAGGSDVKKL 860

Query: 886 DQAIAGVASFLK 897
            +A+    ++++
Sbjct: 861 PEALEAARAWIE 872


>gi|238753177|ref|ZP_04614619.1| Alanyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238708604|gb|EEQ00880.1| Alanyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 846

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/884 (42%), Positives = 533/884 (60%), Gaps = 55/884 (6%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHH
Sbjct: 1   MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145
           TFFEMLGNFSFG YFK  AI  AW+LLT  + F+L + +L++TVY+ D+EA+++W    G
Sbjct: 61  TFFEMLGNFSFGDYFKHDAISFAWELLTSGQWFNLPKEKLWVTVYETDDEAYEIWANEIG 120

Query: 146 LSADKIIRITTN------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYI 198
           +  ++IIRI         DNFW M +TGPCGPCSEIF+D G+ I GG PGS  E+G+RYI
Sbjct: 121 IPHERIIRIGDKGAPFASDNFWQMGDTGPCGPCSEIFYDHGDHIWGGPPGSPEEDGDRYI 180

Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           EIWN+VFMQF +Q+      LPK S+DTGMGLER+A VLQ    NY+IDLF+ LI A  +
Sbjct: 181 EIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNTNYEIDLFRDLIAAVAE 240

Query: 259 VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
           VTG      N  + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG  
Sbjct: 241 VTGATD--LNSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNILGAK 298

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
           E     L+  L   MGSA  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L  
Sbjct: 299 ETFFYKLVGPLIAVMGSAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT- 357

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438
            + L+G+ AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR       S
Sbjct: 358 GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARE------S 410

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
                 + SL     A+QF GYD +                          + V A+ + 
Sbjct: 411 SGFGADYNSLIRVDSASQFSGYDHV-----------------------HQQATVTALFRN 447

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GE V+E   G++  VV +QTPFY E+GGQ+GD G          ++D QK       H  
Sbjct: 448 GEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDKGELKNATATFAVSDTQKYG-QAIGHLG 506

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            +  G LR   S+   +D   R ++ +NHSATHLLH AL   LG HV+Q GS +    LR
Sbjct: 507 QLTHGTLRVNHSIDAQVDVARRNRIRLNHSATHLLHAALRKTLGEHVAQKGSLVNDKYLR 566

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD +H + +   +++ +ED VN+ I +N+PV T +M  E A   GA AL G KY+D+VRV
Sbjct: 567 FDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTEVMELEAAKEKGAMALFGEKYDDQVRV 626

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +++     G  S+ LCGG H S TG+I L  I+SES   AGIRRIEA+TG+ A + L  Q
Sbjct: 627 LTM-----GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQQ 681

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIAD 793
            + L  +A  +K     +  +V  + +  + L+    + K Q   ++ +        +  
Sbjct: 682 SDLLADVAHLVKGDTHTLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSNAKLVNG 741

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           V  +   +  V+ K L++++D L+ ++ S II+L   + + K S+++ VT+DL  +  A 
Sbjct: 742 VKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLATTA-DDKVSLIVGVTKDLTSKVKAG 800

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +L    A+ + GG GGGRP MAQ+GG + +    A+A V ++++
Sbjct: 801 ELIADIAQQV-GGKGGGRPDMAQAGGTDVHALPSALASVEAWVE 843


>gi|114569559|ref|YP_756239.1| alanyl-tRNA synthetase [Maricaulis maris MCS10]
 gi|122316388|sp|Q0AQY6|SYA_MARMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114340021|gb|ABI65301.1| alanyl-tRNA synthetase [Maricaulis maris MCS10]
          Length = 884

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/907 (48%), Positives = 595/907 (65%), Gaps = 36/907 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++  IR TFL++F K+ HE++PS+ L+P +DPTL+F N+GMVPFKN FTGQEK     
Sbjct: 1   MASLRDIRATFLDYFAKHEHEVVPSAPLVPQDDPTLLFVNAGMVPFKNSFTGQEKRASLR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T EF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAISHAWNLVTGEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY EDE+A  LW+KI+GL+ D+II I+T+DNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 PAEKLLVTVYAEDEQARALWRKIAGLTDDRIIGISTSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG P    E+G+R+IEIWNLVFMQ+EQ    ER  LPK SIDTGMGLER++ +LQ 
Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQYEQLGPDERINLPKPSIDTGMGLERISAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K NNY+ DLF++LI A E V G+K EG+ + +HRVI DHLRS+ FL+ADG+ P+NEGRGY
Sbjct: 241 KHNNYETDLFRNLIAAGESVLGVKAEGDALASHRVIADHLRSTCFLMADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EP+M  L+ AL +EMG AYPEL +A+ L+EETL+ E+ERF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAGEPVMWKLVDALKSEMGDAYPELERAQALLEETLQVEEERFQ 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LL+   + +G+ + L G  AFKLYDT+G PLD+ QD L A+G+  +D   FN
Sbjct: 361 RTLGRGLSLLEEATADMGEGDALAGATAFKLYDTYGFPLDLTQDALRAKGMT-VDEAGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+++QR+ ARA     G    + +WF++++K GAT F GY                   
Sbjct: 420 SAMDKQRADARASKFSSGDAAPDAVWFAVRDKVGATAFTGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                  G    + AIV  G+  +   SGQ+ E+VFD+TPFY E+GGQ GDTG       
Sbjct: 461 ----AGTGGKGRLTAIVSGGQEAKALGSGQRAELVFDETPFYGESGGQCGDTGEIRFVDG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D QK+   +  H  ++ +G +       L  D   R  +  NHSATHL H AL 
Sbjct: 517 AVFTVEDTQKRGGDMHAHIGVLTKGEITLGDVAALDADAPRRAAIRANHSATHLAHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV+Q GS + PD LRFD +H+K +++ ++ +IE  VN +I QN+PV TR M  + 
Sbjct: 577 DVLGAHVTQKGSHVGPDRLRFDFSHNKSVSADQIAAIEAQVNAVIRQNVPVSTREMTPDA 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AI +GA AL G KY D VRV+++     +    +S  LCGGTHV  TG+I L  I++E++
Sbjct: 637 AIEAGALALFGEKYGDTVRVLAMGQGLADHATPYSVELCGGTHVERTGDIALFKIIAETA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +GIRRIEA+TG+ AR ++  Q    ++ A  LK    ++  RV  + +E RKL+   A
Sbjct: 697 VSSGIRRIEAMTGEGARLYMDEQIGFGRAAADALKTPPSDLATRVAALVDERRKLERQLA 756

Query: 776 KRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           + K QL      +        I  VNF+  ++  V  K+L+ ++D  + ++ SG+   +G
Sbjct: 757 EAKKQLAMGGGASGAPAGPETINGVNFIGRVVEGVGGKDLRGLIDEAKAQMGSGVAAFIG 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + KA++ + VT+DL DRF AVDL +  A  +GG GGGGRP  AQ+GGP+G KA+  +
Sbjct: 817 V-NDGKAALAVGVTDDLKDRFVAVDLVKAGAAAVGGKGGGGRPDFAQAGGPDGAKANDGL 875

Query: 890 AGVASFL 896
           A + + L
Sbjct: 876 AAIRAAL 882


>gi|163794125|ref|ZP_02188098.1| Alanine--tRNA ligase [alpha proteobacterium BAL199]
 gi|159180739|gb|EDP65258.1| Alanine--tRNA ligase [alpha proteobacterium BAL199]
          Length = 889

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/904 (47%), Positives = 577/904 (63%), Gaps = 36/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+  + IR  FL++F  +GH  + SS L+P NDPTLMFT +GMV FKN+FTG EK  Y  
Sbjct: 1   MATTNDIRRVFLDYFAAHGHTAVESSPLVPRNDPTLMFTTAGMVQFKNVFTGAEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+T++F L
Sbjct: 61  AATAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIEYAWNLITRDFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDE+A  LW+KI+GL  D+IIRI T+DNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLVTVYSEDEDAAALWRKIAGLPDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG P    E+G+R++EIWNLVFMQFEQ  K ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 PHIAGGPPGSPDEDGDRFMEIWNLVFMQFEQITKDERRSLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI+AS   +  + +G   V+HRV+ DHLR+S+FLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDTDTMRALIEASAHASNTEPDGPFKVSHRVVADHLRASAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G TEPLM  LLP L  +MG AYPEL +A+ LI  TL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHIMGCTEPLMHRLLPTLVRDMGGAYPELGRAQALITGTLQLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL  L+     LG  + L G+VAFKLYDT+G PLD+  DIL  +G   +D   F+
Sbjct: 361 DTLGRGLKHLEEATGKLGDSQALPGEVAFKLYDTYGFPLDLTADILRGQGRT-VDQAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ AR    G G   T+ +WF ++EK GAT+F+GYD                  
Sbjct: 420 TAMDAQRAAARKAWTGSGEAATDAVWFEVREKTGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A++  G+ V++A  G +V VV +QTPFY E+GGQ+GDTG       
Sbjct: 462 -----TTAAEGQVTALLVDGKPVQKAELGVEVLVVVNQTPFYGESGGQVGDTGTIRAIDG 516

Query: 540 ---RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
               + + D Q+K   +FVH  ++  G L    ++ LT++ + R +   NHSATHL+H A
Sbjct: 517 GTAVVAVVDTQRKLGDVFVHRGMLSGGALSVGDAVQLTVETERRDRTRANHSATHLMHEA 576

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG HV+Q GS + P+ +RFD +H   I   +L  +E  VN  +  N  V TR+M  
Sbjct: 577 LRQRLGEHVAQKGSMVAPERMRFDFSHPASIAREDLAWVEAEVNRRVRGNSEVTTRLMTP 636

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGG----VHSSALCGGTHVSSTGEIMLLYIVS 712
           + AI  GA AL G KY D VRVVS+            S  LCGG HV  TG+I L  IV 
Sbjct: 637 QAAIDEGAMALFGEKYGDEVRVVSMGGSADKANRAAWSVELCGGIHVRRTGDIGLFKIVG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ AG+RRIEA+TG  A   +  ++  L   A+ LK +  ++  RV  + EE R+L+ 
Sbjct: 697 ESAVAAGVRRIEAVTGSGALDWIGAREAALGEAAAELKTTPEDLPARVHALVEERRRLER 756

Query: 773 IHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              + + +L           K+A + + +  +  V ++ELK + DAL+K+I SG++ +V 
Sbjct: 757 ELVETRKKLAAGGGAAGEVKKVAGLTYAARALEGVPARELKGLADALKKEIGSGVVAVVS 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              E KAS+++ VT DL  R +AVDL R+ ++ LGG GGGGRP MAQ+GGP+ ++A  A+
Sbjct: 817 GD-EGKASLVVGVTADLTGRISAVDLVRVGSEALGGKGGGGRPDMAQAGGPDASQAQAAL 875

Query: 890 AGVA 893
             + 
Sbjct: 876 DAIE 879


>gi|126729804|ref|ZP_01745617.1| alanyl-tRNA synthetase [Sagittula stellata E-37]
 gi|126709923|gb|EBA08976.1| alanyl-tRNA synthetase [Sagittula stellata E-37]
          Length = 890

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/897 (48%), Positives = 572/897 (63%), Gaps = 44/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F+K GH+++PSS L+P NDPTLMF NSGMV FKN FTG EK  Y  
Sbjct: 1   MASLNDIRSTFLNYFEKQGHQIVPSSPLVPRNDPTLMFVNSGMVQFKNRFTGVEKGDYDR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  A++L+T+EF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAYELITREFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ R+Y TVY  D+EAF++WKK  G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRIYTTVYHTDDEAFEIWKK-VGVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 PEVWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMKALDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS Q T +  +G   ++HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 KHDNYDTDLMRSLIEASAQATSVDPDGPGKMHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG+AYPEL + + +IEETL SE+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAQDPLMHRLVPALVRQMGTAYPELSRGQAMIEETLLSEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  LS LG D  L G+ AFKLYDT G PLD+ QD L  +G + +DI  F+
Sbjct: 360 QTLDRGLKLLDEELSGLGDDAALPGETAFKLYDTFGFPLDLTQDALREKGRS-VDIEGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ++RARA   G G      +W+ + E +GAT F+GYD                  
Sbjct: 419 AAMAEQKARARAAWSGSGDAADTAVWYDIAETHGATDFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G +V     G+K  +V +QTPFY E+GGQ+GDTG       
Sbjct: 461 -----TEQAEGQVLALVKDGALVTSLAEGEKGWIVLNQTPFYGESGGQVGDTGWLRRLED 515

Query: 540 RLQITDVQKKAEG----IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             +I  V+   +     +F H   V +G      +L L +D+  R  +  NHSATHLLH 
Sbjct: 516 EHEIATVEDTQKMGGGKVFAHLVKVNKGTFAKGDALALEVDHGRRSSIRANHSATHLLHE 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS   PD LRFD +H K ++++E+K++E +VN  I QN PV TR+M 
Sbjct: 576 ALREALGDHVAQRGSLNAPDRLRFDFSHGKALSASEIKNVERDVNAYIRQNTPVSTRLMT 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLL 708
            +DA A GA AL G KY D VRVVS+          DG  +S  LCGGTHV  TG+I   
Sbjct: 636 PDDARAIGAQALFGEKYGDEVRVVSMGAKPGSGKGADGATYSLELCGGTHVRQTGDIGAF 695

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
             + +S+  AG+RRIEA+TGQ A  HL  Q + L ++A+ +K     V  RV  + EE R
Sbjct: 696 VCLGDSASSAGVRRIEALTGQLALDHLAQQGQTLAAVAAEMKAPASEVPARVRTLLEERR 755

Query: 769 KLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           KL+   A  + +L +            +I  V F++ +++ V  K+L  ++D  + ++ S
Sbjct: 756 KLESEVASLRRELAMSGGGQGAGPEAEEIGGVKFLAQVLTGVTGKDLPPLIDEHKSRLGS 815

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           G ++L+  +  K A     VT+DL    +AVDL + +   LGG GGGGRP MAQ GG
Sbjct: 816 GAVLLIADAGGKAAV-AAGVTDDLKGTLSAVDLVKAAVPELGGKGGGGRPDMAQGGG 871


>gi|312962605|ref|ZP_07777095.1| alanyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311283185|gb|EFQ61776.1| alanyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 872

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/891 (42%), Positives = 527/891 (59%), Gaps = 53/891 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVSSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGK++DL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW  LT    L 
Sbjct: 61  TSSQKCVRAGGKNSDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWTFLTGVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY  D+EA+ +W +  G+  +++IRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KEKLWVTVYATDDEAYDIWTQQIGVPVERMIRIGDNKGAPYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLER+
Sbjct: 181 IFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + V+Q   +NY+IDLF +L+ AS    G      +  + +V+ DH+RS  FLIADG+LP+
Sbjct: 241 SAVMQHVHSNYEIDLFTNLLSASAAAIGCA--NESQSSLKVVSDHIRSCGFLIADGVLPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA  +   LG T      ++ AL  EMG A+PEL Q +  IE  L++
Sbjct: 299 NEGRGYVLRRIIRRACRHGNKLGATGSFFYKIVAALVAEMGDAFPELKQQQGNIERVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F KTL+ GL +L+  L+ L    ++ GDV FKLYDT+G P+D+  DI   R L  I
Sbjct: 359 EEEQFSKTLEHGLKILEQDLAELK-GTVVPGDVVFKLYDTYGFPMDLTADIARERELT-I 416

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR RAR+ S           + +L +   AT+F GY    G        
Sbjct: 417 DEAGFEREMEAQRVRARSASSFG------LDYNTLVKVDVATEFTGYKATVG-------- 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S+ + A+ + G+ V+    G +  VV +QTPFYAE+GGQ+GD G 
Sbjct: 463 ---------------SAKIVALYKDGKSVDVLNEGDEAVVVLNQTPFYAESGGQVGDCGF 507

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D  K     F+HH ++  G L     +   +D   R   ++NHSATHLL
Sbjct: 508 LSSTSGRFEVRDTTKTGG-AFLHHGVLVLGNLTIGAPVDTQVDADVRHATALNHSATHLL 566

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I  A++K++ED VN  I +N  V T  
Sbjct: 567 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIPPAQIKALEDIVNAEIRKNTAVQTEE 626

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D VRV+S+    GG  S  LCGG H + TG+I LL I+SE
Sbjct: 627 TDIETAKAKGAMALFGEKYGDSVRVLSM----GGDFSVELCGGIHANRTGDIALLKIISE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + +G+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R L+  
Sbjct: 683 SGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALEKQ 742

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + + +           S   + DV  ++  +   D K L +++D L+ K+   +I+L 
Sbjct: 743 LEQLQAKAASAAGDDLSASAVDVKDVKVLAARLDGQDGKALLALVDQLKNKLGRAVILLG 802

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG
Sbjct: 803 SVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGG 851


>gi|145589899|ref|YP_001156496.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|205830176|sp|A4SZL8|SYA_POLSQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145048305|gb|ABP34932.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 874

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/911 (42%), Positives = 535/911 (58%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             V+ IR  +L+FF + GH+++PSS ++P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKVTQIRQAYLDFFAQKGHQIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AIQ AWDLLT+ F+L 
Sbjct: 61  TTAQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIQFAWDLLTQVFELP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EA+ +WK   G+ A++IIRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KDKLLVTVYAEDDEAYAIWKDQIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE IPGG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFYDHGEHIPGGPPGSPDEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           A VLQ   +NY+IDLF +LI+A++        +       + +VI DH+R+ SF++ DG+
Sbjct: 241 AAVLQHVHSNYEIDLFVNLIKAAKDTVDGAGGENCDAQSPSLKVIADHIRACSFIVVDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P N GRGYVLRRI RRA+ +   LG  +P    L+PAL  EMG AYPEL  A+  + E 
Sbjct: 301 IPGNAGRGYVLRRIARRAIRHGYKLGARKPFFYQLVPALVKEMGDAYPELRAAQDKVSEV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+ERF +T+  G+ +LDG L+  G  ++++G+ AF+L+DT G PLD+  D+   RG+
Sbjct: 361 LKQEEERFFQTIANGMEILDGALA--GGAKVVDGETAFRLHDTFGFPLDLTADVCRERGV 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F  A+++QR +ARA           K+   L  K   T+F GY+ L+      
Sbjct: 419 T-VDSEGFEVAMQKQRDQARAAGKF-------KVAQGLDYKGVPTRFHGYETLKHEG--- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G  V    +G    VV D TPFYAE+GGQ+GD
Sbjct: 468 -------------------AKITALYLDGSAVNSVKAGDAAVVVLDNTPFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +  R  + D  K    +F H   V  G L+   +L   +D   R     NHSAT
Sbjct: 509 KGELRNEAARFTVDDTFKIQADVFGHQGEVLEGELKVGDTLNALVDIALRNDTMRNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH AL  +LG HV Q GS +     RFD TH+ PIT+ +++ IED VN  I  N    
Sbjct: 569 HILHKALREVLGDHVQQKGSLVDASKTRFDFTHNAPITAEQIRRIEDIVNAEILDNSATS 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            ++M+ EDA  +GA  L G KY D VRV+ +        S  LCGGTHVS TG+I  L I
Sbjct: 629 GKVMSLEDAQKTGAMMLFGEKYGDEVRVLEIGS------SKELCGGTHVSRTGDIGSLKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE  + AGIRR+EA+TGQ A   L G ++K+   A+ LK   G++V RV ++ E  R  
Sbjct: 683 VSEGGVAAGIRRVEAVTGQNALHFLQGLEDKINEAATILKTHPGDLVNRVAQLQESLRLA 742

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    K   +L              +  +  ++  +   D+  L+  MDAL+ K+++  I
Sbjct: 743 ERELEKVNSKLAASQGDELAGQAIDVNGLKVLAARLDGADAGVLRETMDALKAKLKTAAI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S++  VT D + +  A DL    A+ +GG G GG+P MA +GG + +K 
Sbjct: 803 VLASVQGD-KVSLIAGVTADSIAKVKAGDLVNFVAQQVGGKG-GGKPEMAMAGGNDPSKL 860

Query: 886 DQAIAGVASFL 896
             A+ GV  ++
Sbjct: 861 GAALDGVKDWV 871


>gi|110679927|ref|YP_682934.1| alanyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
 gi|123065511|sp|Q165U5|SYA_ROSDO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|109456043|gb|ABG32248.1| alanyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
          Length = 885

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/892 (48%), Positives = 564/892 (63%), Gaps = 41/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 1   MQTLNDIRSTFLSYFEKQGHSVVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRAYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AWDL+T+E  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWDLVTRELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+T+Y  DEEA  +WKK  G+  D+II I TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLYVTIYHTDEEAAAIWKK-VGVPEDRIIPIATNDNFWMMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ     R  L   SIDTGMG+ER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTRRDLAAQSIDTGMGIERVAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   +    +G    +HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 TNDNYATDLMRSLIEASADASNTDPDGPCKTHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG+AYPEL QA+ +I +TL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMHQLVPALVQQMGAAYPELGQAQSMIIQTLLQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  LS LG+ + L G  AFKLYDT+G PLD+ QD L  +G  G+D   F+
Sbjct: 360 QTLERGLKLLDDELSALGEGDDLPGAAAFKLYDTYGFPLDLTQDALREKGR-GVDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+++ARA   G G      IWF + +  G T F+GYD                  
Sbjct: 419 AAMAAQKAKARAAWSGTGEAADAAIWFDVADAQGTTDFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+VQ G   + A +G+ V++  +QTPFYAE+GGQ+GDTG       
Sbjct: 461 -----TEVAEGQIVALVQGGTATQTAKAGETVQIALNQTPFYAESGGQVGDTGVIKTANG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +TD +K A+ +FVH A V  G L    +  LT+D   R  +  NHSATHLLH AL  
Sbjct: 516 VANVTDCRKTAD-VFVHMAKVTEGALSVGEAAQLTVDPARRTAIRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H++ ++  EL  +E +VN  I QN PV TRIM  + A
Sbjct: 575 ALGDHVAQRGSLNAEDRLRFDFSHTQALSHEELARVEADVNAYIRQNAPVETRIMTPDAA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+           G  +S  LCGGTHV  TG+I     + 
Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRKEGSGKGLSGDTYSLELCGGTHVRQTGDIGAFVTLG 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TG  A  HL  QD++L ++A+ LK    +V  RV  + EE R L  
Sbjct: 695 DSASSAGVRRIEALTGAAALQHLRAQDQRLAAVAADLKAQLADVPERVRSLLEERRALSN 754

Query: 773 IHAKRKLQLN------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             A+ + +L               +A   FM+ ++S V  K+L  ++D +++++ SG+++
Sbjct: 755 EVAQLRRELAMSGGGGSAAPDVKDVAGTPFMAQVLSGVTGKDLPGLVDQMKEQMGSGVVL 814

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           L+    + KA+V   VT+DL  + +AVD+ + S   LGG GGGGRP MAQ G
Sbjct: 815 LIA-DADGKAAVAAGVTKDLTAKLSAVDIVKASVAALGGKGGGGRPDMAQGG 865


>gi|220919010|ref|YP_002494314.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956864|gb|ACL67248.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 905

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/935 (39%), Positives = 538/935 (57%), Gaps = 76/935 (8%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  F  +F+++GH  + S+SL+P NDPTL+FTN+GMV FK++FTG+E+  Y
Sbjct: 1   MKTLTAAEIRELFQRYFEEHGHRRVASASLVPQNDPTLLFTNAGMVQFKDVFTGRERRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116
              TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+L+T   
Sbjct: 61  SRATTAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKRDAIAWAWELVTGPA 120

Query: 117 EFDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
              + + RL  TV+        DEEAF+LWK   G+  ++I ++   DNFW+M +TGPCG
Sbjct: 121 WLGIAKDRLAATVFAGEGTLPWDEEAFELWKAQ-GVPVERIHKLGAKDNFWAMGDTGPCG 179

Query: 171 PCSEIFFDQGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           PCSE+ + QG  IP           G + + +R++EIWNLVFMQFE+        LPK S
Sbjct: 180 PCSELHYFQGNDIPCAEELAGRKCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPS 239

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRS 281
           IDTG GLER+A+V+Q K +NYD DLF+ +IQA E+++G +Y+  +    + RVI DH R+
Sbjct: 240 IDTGAGLERLASVVQGKRSNYDTDLFRSIIQAVERLSGKRYDAASDDGVSMRVIADHARA 299

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           ++FL+ DG+LP+NEGRGYVLRRIMRRA+ + + LG  +P +  +  A+  EMG AYPE  
Sbjct: 300 TTFLVGDGVLPSNEGRGYVLRRIMRRAIRHGKRLGLEKPFLAAVCGAVIDEMGGAYPETR 359

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK----------------DEILNGD 385
           + +  IE+  + E+E F +TLD+GL +L+G +  L                    I++G 
Sbjct: 360 ENRAFIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDAIHDGKPATPAPGRARPIIDGK 419

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
           VAF+LYDT G PLD+ + I   RG   +D   F++ + EQR+R+     G G    + + 
Sbjct: 420 VAFQLYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQRARS--EWKGSGEQGVDDLH 476

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
             +  + G  +F+GY+                            + VKAI+  G  V  A
Sbjct: 477 KQIARELGEVKFLGYEQP-----------------------AARAQVKAILANGARVARA 513

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G KVE+V D TPFY E+GGQ+GD G   G G+ +++ D Q+   G+  H   V RG +
Sbjct: 514 GKGDKVELVTDATPFYGESGGQVGDVGRITGPGLEIRVDDAQRPVPGLVTHVGEVLRGEV 573

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               ++ L +D + R  +  NHSATHLL  AL  +LG HV Q GS + PD LRFD +H +
Sbjct: 574 AVGDAVELAVDDRRRDLVRANHSATHLLQFALREVLGEHVKQAGSVVAPDYLRFDFSHFQ 633

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P+T  EL ++E  VND++ +N    T ++  E+A  +GA  + G KY D VRVV +    
Sbjct: 634 PVTEEELAAVERRVNDLVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIGP-- 691

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S  LCGGTHV  +G+I    I SE SI +G+RR+ A TG RA      + E+L+  
Sbjct: 692 ----SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRA 747

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHI 800
           A+ LK     V  ++++     + L+    + + +               +     ++  
Sbjct: 748 AALLKAGALEVAQKIDQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAAR 807

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +   D K L+ + D L+ ++  G++ L G  ++ KA +L+ VT DL  R  A DL + +A
Sbjct: 808 VDG-DGKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAA 865

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           K++ GG GGG+P MAQ+GG +    ++A+  VA  
Sbjct: 866 KLV-GGSGGGKPDMAQAGGSDPAGLEKALEKVAEL 899


>gi|197124228|ref|YP_002136179.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|196174077|gb|ACG75050.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 905

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/935 (39%), Positives = 538/935 (57%), Gaps = 76/935 (8%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  F  +F+++GH  + S+SL+P NDPTL+FTN+GMV FK++FTG+E+  Y
Sbjct: 1   MKTLTAAEIRELFQRYFEEHGHRRVASASLVPQNDPTLLFTNAGMVQFKDVFTGRERRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116
              TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+L+T   
Sbjct: 61  SRATTAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKRDAIAWAWELVTGPA 120

Query: 117 EFDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
              + + RL  TV+        DEEAF+LWK   G+  ++I ++   DNFW+M +TGPCG
Sbjct: 121 WLGIAKDRLAATVFAGEGTLPWDEEAFELWKAQ-GVPVERIHKLGAKDNFWAMGDTGPCG 179

Query: 171 PCSEIFFDQGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           PCSE+ + QG  IP           G + + +R++EIWNLVFMQFE+        LPK S
Sbjct: 180 PCSELHYFQGNDIPCAEELAGRRCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPS 239

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRS 281
           IDTG GLER+A+V+Q K +NYD DLF+ +IQA E+++G +Y+  +    + RVI DH R+
Sbjct: 240 IDTGAGLERLASVVQGKRSNYDTDLFRSIIQAVERLSGKRYDAASDDGVSMRVIADHARA 299

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           ++FL+ DG+LP+NEGRGYVLRRIMRRA+ + R LG  +P +  +  A+  EMG AYPE  
Sbjct: 300 TTFLVGDGVLPSNEGRGYVLRRIMRRAIRHGRRLGLEKPFLAAVCGAVIDEMGGAYPETR 359

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK----------------DEILNGD 385
           + +  IE+  + E+E F +TLD+GL +L+G +  L                    I++G 
Sbjct: 360 ENRAFIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDAIHDGKPATPAPGRARPIIDGK 419

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
           VAF+LYDT G PLD+ + I   RG   +D   F++ + EQR+R+     G G    + + 
Sbjct: 420 VAFQLYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQRARS--EWKGSGEQGVDDLH 476

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
             +  + G  +F+GY+                            + VKAI+  G  V  A
Sbjct: 477 KQIAGELGEVKFLGYEQP-----------------------AARAQVKAILANGARVARA 513

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G KVE+V D TPFY E+GGQ+GD G   G G+ +++ D Q+   G+  H   V RG +
Sbjct: 514 GKGDKVELVTDATPFYGESGGQVGDVGRITGPGLEIRVDDAQRPVPGLVTHVGEVLRGEV 573

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               ++ L +D + R  +  NHSATHLL  AL  +LG HV Q GS + PD LRFD +H +
Sbjct: 574 AVGDAVELAVDDRRRDLVRANHSATHLLQFALREVLGEHVKQAGSVVAPDYLRFDFSHFQ 633

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P+T  EL ++E  VND++ +N    T ++  E+A  +GA  + G KY D VRVV +    
Sbjct: 634 PVTEEELAAVERRVNDLVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIGP-- 691

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S  LCGGTHV  +G+I    I SE SI +G+RR+ A TG RA      + E+L+  
Sbjct: 692 ----SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRA 747

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHI 800
           A+ LK     V  ++++     + L+    + + +               +     ++  
Sbjct: 748 AALLKAGALEVAQKIDQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAAR 807

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +   D K L+ + D L+ ++  G++ L G  ++ KA +L+ VT DL  R  A DL + +A
Sbjct: 808 VDG-DGKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAA 865

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           K++ GG GGG+P MAQ+GG +    ++A+  VA  
Sbjct: 866 KLV-GGSGGGKPDMAQAGGSDPAGLEKALEKVAEL 899


>gi|171464036|ref|YP_001798149.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193574|gb|ACB44535.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 874

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 533/911 (58%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             VS IR  +L+FF + GH+++PSS ++P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKVSQIRQAYLDFFAQKGHQIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AIQ AWDLLT+ F L 
Sbjct: 61  TTTQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIQFAWDLLTQIFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EAF++W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 KEKLLVTVYAEDDEAFEIWNKQIGVPANRIIRIGDNKGARYASDNFWMMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ IPGG P    E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFYDHGDHIPGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           A VLQ   +NY+IDLF +L++AS++       +       + +VI DH+R  SF++ DG+
Sbjct: 241 AAVLQHVHSNYEIDLFVNLLKASKEAVDAAGGENCDPESPSLKVIADHIRVCSFIVVDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P N GRGYVLRRI RRA+ +   LG  +P    L+PAL  EM  AYPEL  A+  + E 
Sbjct: 301 IPGNAGRGYVLRRIARRAIRHGYKLGARKPFFYQLVPALVKEMSDAYPELRAAQDKVSEV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+ERF +T+  G+ +LDG L+  G  ++++G+ AF+L+DT G PLD+  D+   RG+
Sbjct: 361 IKQEEERFFQTIANGMEILDGALA--GDAKVVDGETAFRLHDTFGFPLDLTTDVCRERGV 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F+  +++QR +ARA           K+   L  K   TQF GYD L+      
Sbjct: 419 T-VDADGFDVVMQKQRDQARAAGKF-------KVAQGLDYKGRPTQFYGYDTLKHEG--- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G  V    +G    +V D TPFYAE+GGQ+GD
Sbjct: 468 -------------------AKVTALYVDGSAVPCVKAGDVAVIVLDNTPFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    + IR  +    K    +F H   V  G L+    L   +D + R     NHSAT
Sbjct: 509 KGELRNESIRFAVEGTFKIQADVFGHQGEVLEGELKVGDVLNAIVDTRQRTDTMRNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH AL  +LG HV Q GS +     RFD TH+ PIT  ++  IED VN  I +N    
Sbjct: 569 HILHRALREVLGDHVQQKGSLVDAAKTRFDFTHNAPITVEQIHRIEDIVNREILENTATS 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            ++M+ +DA  +GA  L G KY D VRV+ +        S  LC GTHVS TG+I  L I
Sbjct: 629 GKVMSLDDAQKTGAMMLFGEKYGDEVRVLEIGS------SKELCCGTHVSRTGDIGSLKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE  + AGIRR+EA+TG  A   L G ++K+   A+ LK   G++V RV ++ +  R+ 
Sbjct: 683 VSEGGVAAGIRRVEAVTGNNALHFLQGLEDKVNEAAAILKTHPGDLVNRVAQLQDSLRQA 742

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    K   +L              +  +  ++  I+  D+  L+  MDAL+ K+++  I
Sbjct: 743 ERELEKVNSKLAASQGDELAGQAIDVNGIKVLAARINSADASVLRKTMDALKAKLKTAAI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S++  VT D + +  A DL    A+ +GG G GG+P MA +GG + +K 
Sbjct: 803 VLASVQGD-KVSLIAGVTTDSIGKIKAGDLVNFVAQQVGGKG-GGKPEMAMAGGTDPSKL 860

Query: 886 DQAIAGVASFL 896
             A+ GV  ++
Sbjct: 861 GVALDGVKDWV 871


>gi|254455521|ref|ZP_05068950.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082523|gb|EDZ59949.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 888

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/912 (44%), Positives = 598/912 (65%), Gaps = 44/912 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +++ IR TFL++F+KN H ++ SS+L+P NDPTLMF NSGMV FKN+FTG EK  YQ  
Sbjct: 4   KSLNEIRNTFLKYFEKNDHRIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYQRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AWDL+T++F +D
Sbjct: 64  TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEQAIHYAWDLITRDFGID 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY ED+EAF  WKKI+G + D+IIRI T+DNFWSM ETGPCGPCSEIF+D G+
Sbjct: 124 KNRLYVTVYHEDDEAFNFWKKIAGFNDDRIIRIATSDNFWSMGETGPCGPCSEIFYDHGD 183

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GGLPG+  E+G+R+IEIWNLVFMQFEQ +K++R  LPK S+DTGMGLER+A +LQ  
Sbjct: 184 HLAGGLPGTKDEDGDRFIEIWNLVFMQFEQISKEKRIDLPKPSVDTGMGLERIAALLQGT 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ D FK +I ++ ++  +K + +N+ + RVI DHLR+SSFLIA+G+LP+NEGRGYV
Sbjct: 244 HDNYETDHFKKIINSASEILKVKSDNSNLSSFRVIADHLRASSFLIAEGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRR M ++ LLG  EP+  +L   L  EM   YPEL++A+ LI+ETL+ E+E+F  
Sbjct: 304 LRRIMRRGMRHSHLLGSNEPVFFNLFETLRDEMKGNYPELVRAESLIKETLKMEEEKFLV 363

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            LDRG+ +L+  +S +  D++L G+VAFKLYDT+G PLD+ +DIL  + ++ ID   F  
Sbjct: 364 LLDRGIKILNEEISKI--DKVLPGEVAFKLYDTYGFPLDLTEDILRNKSMS-IDSEKFQS 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++E R  A+ +  G G    E +WF +K+K GAT+F+GY+                   
Sbjct: 421 LMKESRELAKKNWKGSGDAAVEDVWFGIKDKLGATEFLGYE------------------- 461

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               TN     V ++++  + V+E  +G +  ++ +QTPFY E+GGQ+GDTG   G+  +
Sbjct: 462 ----TNQAEGAVLSLLKDNKEVDELKNGDEGMIIVNQTPFYGESGGQVGDTGEIAGNDFK 517

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++TDVQKK   +FVH+  V  G ++ + ++ L I+ + R      HSATHLLH +L  +
Sbjct: 518 FEVTDVQKKLGDLFVHYGKVINGSIQLKDNVELKINVERRDDTRAYHSATHLLHESLRRV 577

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD +H KPI + E+  IE  VN+++++   V TR+M  ++A+
Sbjct: 578 LGKHVTQKGSLVEPSRLRFDFSHMKPIQTEEIDKIEGFVNNMVSKKSDVKTRLMTPDEAV 637

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY + VRV+S+  +DG   S+ LCGGTHV +TG+I    IVS+SSI AG+
Sbjct: 638 ENGALALFGEKYGEEVRVLSMGDDDGSYFSTELCGGTHVRNTGDIGKFKIVSQSSIAAGV 697

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-----WEE------YRK 769
           RRIEA+  ++   +L  +++     +        N+  ++ E+      +E       + 
Sbjct: 698 RRIEALRDKQLEDYLNNKEKLSNISSEKNDQIINNLSEQITELGGKPSLDESDQRILIKN 757

Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L        +   +ED     +   +I  +      +  +  KEL+ ++D  +K++  GI
Sbjct: 758 LTKQLETISVNSILEDKTKNIIKDEQINGIKIRFQNVDGLPPKELRKLVDKGKKELSEGI 817

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +++    K+ K  + + VT+ L ++F+AV   +  ++++GG GGGGR   AQ+GG + +K
Sbjct: 818 VIVFAA-KDDKVGIAVGVTDTLTNKFDAVKFVKTGSEIIGGQGGGGRKDFAQAGGQDKSK 876

Query: 885 ADQAIAGVASFL 896
            D+A   + + +
Sbjct: 877 IDEAFEKLKTLI 888


>gi|296282673|ref|ZP_06860671.1| alanyl-tRNA synthetase [Citromicrobium bathyomarinum JL354]
          Length = 886

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/890 (47%), Positives = 557/890 (62%), Gaps = 34/890 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR TFLEFF+   H+ + S+ L+P NDPTLMF N+GMVPFKN+FTG E P    
Sbjct: 1   MTSTNDIRRTFLEFFESRDHKRVASAPLVPHNDPTLMFVNAGMVPFKNVFTGLETPPAPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT+EF L
Sbjct: 61  AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHNAWTLLTEEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF LW+KI+GL  D+IIRI T DNFW+M + GPCGPCSEIF+D G
Sbjct: 121 DKNRLLATVYHTDDEAFDLWRKIAGLPEDRIIRIATKDNFWAMGDDGPCGPCSEIFWDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R++EIWNLVFMQ EQ+  +    LP  +IDTGMGLER+A VLQ 
Sbjct: 181 DHIPGGPPGSPEEDGDRFVEIWNLVFMQNEQRGGEIIGDLPNQNIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD D F+ LI+++E           I ++RVI DHLR++ FLIADG+LP+NEGRGY
Sbjct: 241 VHNNYDTDTFRTLIESTEAQLHADATDYTIASYRVIADHLRATGFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG   PLM  L+P L  EMG AYPEL + + LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKTPLMHRLVPTLVGEMGQAYPELGRGQALIEETLEREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LLD     LGK + L+G+VAFKLYDT+G P D+ +D L  +G   +D   F+
Sbjct: 361 ETLEKGLRLLDEATGSLGKGDQLDGEVAFKLYDTYGFPYDLTEDALRGQG-IAVDREGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR  ARA   G G     ++WFS+ E+ GAT+F GY   +G              
Sbjct: 420 AAMARQREAARAAWKGSGQAADSEVWFSIAEREGATEFTGYSATQG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V AIV+ G  V  A +G+ V ++ +QTPFY E+GGQ GD+G       
Sbjct: 466 ---------EGQVVAIVKDGVEVTSAAAGEDVVLLTNQTPFYGESGGQSGDSGSITTHDG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R+ + D  K    +  H   +E G +R    + LT+D Q R ++  NHSATHLLH AL 
Sbjct: 517 LRIAVRDTGKPLGRLHTHQGKIEAGEVRVGDEVRLTVDEQRRNRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG  V+Q GS +  D LRFD ++ + I    L  IE +VN  I  N  V TR+M  +D
Sbjct: 577 RRLGDQVTQKGSLVAEDYLRFDFSYPEKIDREGLDRIEQDVNSQIRGNSEVGTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+A+GA AL G KY D VRV+S+  +     S  LCGGTHV  TG+I L  I+ ESS+ +
Sbjct: 637 AVAAGAMALFGEKYGDEVRVLSMGRDADADFSIELCGGTHVERTGDIGLFAIIGESSVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG  A  +L  +   L  ++  L  +    V +++ +  + + L+   A  K
Sbjct: 697 GVRRIEALTGNAASEYLRTRANALNEISGKLGATPDAAVAQLDALLAQRKTLERELADAK 756

Query: 779 LQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
             L +         +S   I  V F   +I  +D KEL+ ++DA ++++ SGI  +    
Sbjct: 757 RALALSGGGGDGPQVSDETINGVTFSGQVIEGLDPKELRPLLDAAKQRLGSGIAAICAT- 815

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            + KA+  + VT+DL DRF+AV+L R     LGG GGGGR  MAQ GGP+
Sbjct: 816 NDGKAAFAVAVTDDLTDRFSAVELVRAGVAALGGKGGGGRADMAQGGGPD 865


>gi|294669536|ref|ZP_06734603.1| hypothetical protein NEIELOOT_01435 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308449|gb|EFE49692.1| hypothetical protein NEIELOOT_01435 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 873

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/912 (39%), Positives = 524/912 (57%), Gaps = 58/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +V+ DH+RS SFLIADG++
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVVADHIRSCSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  I E L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIMEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+       L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALTK--GSNKLDGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN+ +        A      +    K    L      T+F GY+          
Sbjct: 417 DLDEEGFNREM-------EAQRARARAAQNFKANAQLDYTGADTEFTGYE---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ +  E VEE  +G+   VV +QTPFYAE+GGQ+GD 
Sbjct: 460 -------------KRSQDTKIIALYKGSEAVEELQAGEVGVVVLEQTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R ++ D QK    +      V  G L+   ++   ID   R  +  NHS TH
Sbjct: 507 GFIVSGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS    +  RFD++H++ I++ E+  +E  VN  I  N+PV  
Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHTQGISAEEIAEVERRVNAAIIANVPVKV 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ EDA  SGA  L G KY D VRV+++     G +S  LCGGTHV+ TG+I    I+
Sbjct: 627 ETMSIEDAQKSGAVMLFGEKYGDFVRVITM-----GDYSIELCGGTHVARTGDIGFFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AGIRR+EAITG  A +    Q+  +K++ + +K     +V+ +++      + L
Sbjct: 682 SEGGIAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANTKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V        +   +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAVKL 858

Query: 886 DQAIAGVASFLK 897
            + +  V  ++K
Sbjct: 859 PEMLGSVEDWVK 870


>gi|255065962|ref|ZP_05317817.1| alanine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255049873|gb|EET45337.1| alanine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 874

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/912 (39%), Positives = 521/912 (57%), Gaps = 58/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +V+ DH+RS SFLIADG++
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVVADHIRSCSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+       L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALTK--GSNKLDGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN+ +        A      +    K    L      T+F GY+          
Sbjct: 417 DLDEEGFNREM-------EAQRARARAAQNFKANAQLDYAGADTEFTGYE---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ +  E V+E  +G+   VV +QTPFYAE+GGQ+GD 
Sbjct: 460 -------------KRSQDTKIIALYKASEAVDELQAGEAGVVVLEQTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++ D QK    +      V  G L+   ++   ID   R  +  NHS TH
Sbjct: 507 GFIFAGENCFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS    +  RFD++H + I++ E+  +E  VN  I  N+PV  
Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKV 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ EDA  SGA  L G KY D VRV+++     G +S+ LCGGTHV+ TG+I    I+
Sbjct: 627 ETMSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AGIRR+EAITG  A +    Q+  +K++ + +K     +V+ +++      + L
Sbjct: 682 SEGGIAAGIRRVEAITGLAALAWAQNQESLVKNIIAEVKAQTEKDVLAKIQANAANAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V        +   +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKL 858

Query: 886 DQAIAGVASFLK 897
            + +  V  ++ 
Sbjct: 859 PEMLGSVEGWVN 870


>gi|90420928|ref|ZP_01228833.1| alanyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334903|gb|EAS48675.1| alanyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 890

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/894 (52%), Positives = 607/894 (67%), Gaps = 39/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F KN HE + SS L+P NDPTLMFTN+GMV FKN+FTG E   YQ 
Sbjct: 1   MSGVNEIRSAFLDYFAKNDHERVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVETRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              RL +TVY EDEEA  LW+KI+GLS D+IIRI+T+DNFW+M ETGPCGPCSEIFFD  
Sbjct: 121 PADRLLVTVYSEDEEAAALWRKIAGLSDDRIIRISTSDNFWAMGETGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQFEQ +   R  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 EGIPGGPPGSPDEDGDRFIEIWNLVFMQFEQLSADNRVELPRPSIDTGMGLERIAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI + E   G + EG+++ +HRVI DHLRS++FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIASVEATIGSRAEGDSVASHRVIADHLRSTAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A++LG  EP++  +LP L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAKMLGAREPVLYKMLPTLVAEMGRAYPELVRAEALISETLKLEERRFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LL      +     L+G+ AFKLYDT+G PLD+ QD L  RG   +D+ +FN
Sbjct: 361 QTLDRGLSLLTDATEGMDAGAKLSGETAFKLYDTYGFPLDLTQDALRQRG-IEVDLDAFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ AR    G G   +E +WF ++E+ GAT+F+GYD                  
Sbjct: 420 TAMERQKAEARKSWTGSGEAASETVWFPIRERVGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G  V  A +G +V +V +QTPFY E+GGQLGDTG   GDG+
Sbjct: 462 -----TERAEGSVMAVVRNGTEVPAAGAGDEVAIVLNQTPFYGESGGQLGDTGIMRGDGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I D QK AEG+FVH   V+ G ++  M L L +D+  R ++  NHSATHLLH  L  
Sbjct: 517 EIVIADTQKFAEGLFVHRGKVKSGTVKAGMPLDLIVDHGRRTKIRANHSATHLLHEGLRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSHV+Q GS + P+ LRFD +H KPI   EL  +E   N I+ QN PV TR+M  +DA
Sbjct: 577 ILGSHVAQKGSMVAPERLRFDFSHPKPIEPGELAEVERLANGIVLQNAPVETRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IASGA AL G KY D VRVVS+   + G       S  LCGGTHV++TG+I L++I+ ES
Sbjct: 637 IASGAMALFGEKYGDEVRVVSMGTGEEGEKAGKTFSIELCGGTHVNATGDIGLVHILGES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TGQ AR HL+ QD +++ +AS LKVS  +   R+E + EE R+L+   
Sbjct: 697 AVGAGVRRVEALTGQAARDHLLAQDARVRQMASILKVSPADAPARLEAVVEERRRLEREL 756

Query: 775 AKRKLQLNVEDLSC--------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           A+ + +L +               +A V F+  +++ V  K+LK ++D  + ++ SG++ 
Sbjct: 757 AEARKRLALAGDGASGEGGSASKVVAGVGFLGRVLNGVAGKDLKGLVDEAKTQLGSGVVA 816

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            V +    KASV++ VT DL DRF+AV L R ++  +GG GGGGRP MAQ+GGP
Sbjct: 817 FVSVDA-GKASVVVGVTADLTDRFDAVALVRDASVAIGGKGGGGRPDMAQAGGP 869


>gi|296535675|ref|ZP_06897850.1| alanine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296263999|gb|EFH10449.1| alanine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 881

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/895 (47%), Positives = 573/895 (64%), Gaps = 33/895 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR TFL++F ++GH ++ SS L+P NDPTLMFTNSGMV FKN+FTGQEK  Y  
Sbjct: 1   MTSSNDIRATFLDYFARHGHTVVESSPLVPRNDPTLMFTNSGMVQFKNVFTGQEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI+ AW LLT++F L
Sbjct: 61  ATTAQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDQAIEHAWTLLTRDFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TV+ EDE+A  LW+KI+GL  +KIIRI T+DNFW M +TGPCGPCSEIF+D  
Sbjct: 121 PKEKLLVTVFSEDEDAAALWRKIAGLPDEKIIRIPTSDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+ ++    R  LP+ SIDTGMGLER A +LQ 
Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYLEEPAGTRNPLPRPSIDTGMGLERFAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDID F+ LI AS + TG + +G   ++HRV+ DHLRS +FLIADG++P+NEGRGY
Sbjct: 241 KHDNYDIDTFRALILASAEATGQEADGPFKISHRVVADHLRSGAFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRAM +A ++G  EPL+  LLPAL  +MG+AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRILRRAMRHAHMMGTKEPLLYRLLPALIRQMGAAYPELVRAEALISETLKLEENRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             L+RGL LL      LG    L GDVAFKLYDT+G PLD+ QD L   G   +D+  F 
Sbjct: 361 SLLERGLGLLAEESGKLGDKGTLPGDVAFKLYDTYGFPLDLTQDALRGEG-KAVDVAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+ RARA   G G   TE +WF LKEK GAT+F+GY                   
Sbjct: 420 AAMAEQKKRARAAWAGSGEAATETLWFDLKEKLGATEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V  G +VE A  G +V VV +QTPFYAE+GGQ+GDTG   G   
Sbjct: 461 ----STEKAEGEILAVVANGAVVERAGPGTEVAVVLNQTPFYAESGGQVGDTGSITGADG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
                   +K  G+FVH   VE G       +   + ++ R  +  +HSATHLLH AL  
Sbjct: 517 LRIAVRDTQKKLGLFVHLGTVEAGEAAPGKPVQAEVAHERRSAIRAHHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS   PD LRFDV+   P+   +L  +E  VN  I +N  V+TR+M  E A
Sbjct: 577 RLGTHVAQKGSLNAPDRLRFDVSQPTPMQPEDLAWVEAEVNARIRENAEVITRLMTPEAA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + +GA AL G KY D VRVV + ++       GV+S  LCGGTHV  TG+I L  IV+E 
Sbjct: 637 VQAGAMALFGEKYGDEVRVVGMGHDPEATEKHGVYSLELCGGTHVRRTGDIGLFKIVAEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG  A + +  + + L+  A+ LKV+   +  R+  + EE RKL+   
Sbjct: 697 AVSAGVRRVEAVTGAAALALIEAEQKALREAAAALKVNPAELPARIASLVEERRKLERDV 756

Query: 775 AKRKLQLNV--EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           A+ + +L     + S  ++  + F +  + EV  ++LK + +A+ K     ++ LV  + 
Sbjct: 757 AELRKKLATGGSEASVEEVGGLRFSARNLGEVPPRDLKGLAEAILKSGTVDVVALVSTA- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           E KAS++  V +    R +AV L R  +  +GG GGGGRP MAQ+GGP+ +KA+ 
Sbjct: 816 EGKASLVAGVADSAKGRADAVALVRAGSAAVGGKGGGGRPDMAQAGGPDADKAED 870


>gi|225849840|ref|YP_002730074.1| alanyl-tRNA synthetase [Persephonella marina EX-H1]
 gi|225645058|gb|ACO03244.1| alanyl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 878

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/910 (39%), Positives = 530/910 (58%), Gaps = 46/910 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR +FL +F++ GH  + S+S+IP  DPTL+F N+GMVPFKN+F G E+  Y
Sbjct: 1   MKFLTANQIRESFLRYFEERGHTRVKSASIIPETDPTLLFVNAGMVPFKNVFLGLEEKPY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +   + QK  R  GKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+  
Sbjct: 61  KRAVSCQKVFRVSGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKREAIQFAWEYLTEVL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ + +L ++V++ED+EAF++W K+ GL  +KI R+   DNFWSM ETGPCGPCSEI++D
Sbjct: 121 EIPEEKLLVSVFEEDDEAFEIWNKVIGLPEEKIHRLGVEDNFWSMGETGPCGPCSEIYYD 180

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +GE   G     S E  RY+E+WNLVFMQ+ +        LPK +IDTGMGLER+A+VLQ
Sbjct: 181 RGEAF-GNPELGSPEDIRYLEVWNLVFMQYNRDKDGRLTPLPKPNIDTGMGLERIASVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----HRVIVDHLRSSSFLIADGILPA 293
              +NY+ DLF  LI+ ++ V+G  Y+  +  +      RVI DHLR+ +FLI+DG+ P+
Sbjct: 240 GVNSNYETDLFMPLIEFAQSVSGKSYDPEDPGSENTVAMRVIADHLRAITFLISDGVFPS 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ Y   LG   P +   +  +   M   YPELI  +  I+  ++S
Sbjct: 300 NEGRGYVLRRILRRALRYGMELGIERPFLFEGVDVVVDIMKEPYPELIGNRSFIKNLVKS 359

Query: 354 EDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KTL +GL +L  ++  +       + G  AF LYDT+G P+D+++DI    G  
Sbjct: 360 EEEKFIKTLRKGLEILYDIIQKAKKEGRNHITGKEAFLLYDTYGFPVDLLEDIARDNGF- 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           G+DI  + + LEEQ+ RARA      +   + ++  LK K     F+GY+ L        
Sbjct: 419 GVDIAEYYKLLEEQKERARASW-KSQAKEIKPVYLELKNKLPENVFVGYERLEVDD---- 473

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + +++++   V+    G+  E+V D TPFY E GGQ+GD 
Sbjct: 474 ------------------AQILSVLKEDREVDTLHEGETGEIVLDVTPFYPEKGGQVGDR 515

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   GDG    + D Q   EGI VH   V  G ++   ++   +D   R  +  +H+ATH
Sbjct: 516 GIIEGDGFLFDVVDTQTPVEGIIVHRGKVIHGTVKKGETVSAKVDKDTRLDIMRHHTATH 575

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS + PD LRFD TH + +T  ++K +E+ VN+ I +N PV+ 
Sbjct: 576 LLHAALRNLLGDHVKQAGSLVHPDYLRFDFTHFESLTDEDIKRVEELVNEEIMKNEPVIC 635

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M  ++AI SGA A+   KY D VRV+S         S+ LCGGTHVS TG+I    I+
Sbjct: 636 KEMPYDEAIKSGAIAIFDEKYGDTVRVISAG------ISTELCGGTHVSRTGDIGYFKII 689

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+++ +G RRIEA+ G++A    + +   ++++   L   +  ++ ++E +  + ++ Q
Sbjct: 690 SETAVASGTRRIEAVAGRKAVERGLREHFLIENVKRALTAKEDEIIDKIETLKLKLKEAQ 749

Query: 772 LIHAKRKLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                 K +  V+     L+  +   +      +  +   +L+ + D  + K+   ++M+
Sbjct: 750 REIENIKKKSVVDRITDILTVEEKEGIKIAYGSVEGLQPNDLRDLADVARSKLGRSVVMI 809

Query: 828 VGISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             + KEK K + ++ V++DL DR  A ++ +  A  L GG GGGRP MAQ GG   +K  
Sbjct: 810 ASVDKEKNKVNFIVAVSKDLTDRIKAGEIVKKVAPAL-GGKGGGRPDMAQGGGTEPSKLK 868

Query: 887 QAIAGVASFL 896
           +A       +
Sbjct: 869 EAFNIFRKEI 878


>gi|5834358|gb|AAD53924.1|AF179611_8 alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 888

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/916 (48%), Positives = 583/916 (63%), Gaps = 47/916 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPS----SSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP 56
           M   + IR +F   F+K      PS    + L+P NDPTLMF N+GMVPFKN FTG E  
Sbjct: 1   MITTNEIRRSFSRIFRK----EWPSDSTIAPLVPQNDPTLMFVNAGMVPFKNTFTGLESR 56

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+  T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TK
Sbjct: 57  PYKTATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E+ LD  RL +TVY  DEEAF LW+KI+GL  D+II+I T+DNFWSM +TGPCGPCSEIF
Sbjct: 117 EWGLDPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIF 176

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +D G  IPG    + E+G+R++EIWNLVFMQ+EQ N + R  LP+ SIDTGMGLER+A+V
Sbjct: 177 YDHGPEIPGASGLADEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASV 236

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NYD D FK LI AS ++T    +G    +HRVI DHLR++ FL+ADG+LPANEG
Sbjct: 237 LQGVHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEG 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRIMRRAM +A L+G  EPLM  L+PAL +EMG AYPEL++AK LIEETLR E+ 
Sbjct: 297 RGYVLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEET 356

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +TL  GL +L     HL   + L G VAF+LYDT+G P D+  D L AR L  +D  
Sbjct: 357 RFRQTLANGLKILKDETQHLKSGDTLPGAVAFRLYDTYGFPYDLTADALRARNLT-VDQA 415

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A+ EQR  ARA   G G   +++IWF + ++ G T+F GY                
Sbjct: 416 GFDAAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYT--------------- 460

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       S  + A+++ G+ VE A  G  + ++ +QTPFY E+GGQ GD G   G
Sbjct: 461 --------AEKGSGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITG 512

Query: 537 DGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           +   ++ +TD QK    I  H A +E+G ++    + L +D  +R +L  NHSATHLLH 
Sbjct: 513 NNDLKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHA 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HVSQ GS ++ + LRFD +H K ++  EL +IE  VN  I  N  V TR+M 
Sbjct: 573 ALRDQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMT 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYI 710
            E A+ +GA AL G KY + VRV+S+        +    S  LCGGTHVS+ G+I L +I
Sbjct: 633 PESAVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHI 692

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE+++ +GIRRIEA+TG+ AR  L+G+D  L+  AS LK     V  R   I +E RK 
Sbjct: 693 VSETAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKC 752

Query: 771 QLIHAKRKLQLNVED--------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           Q   A +K                +  K+   +F+  +I  ++ K L  ++D  +K I+S
Sbjct: 753 QRSLADQKALAFANANCGQGGNNAAPDKLGAYHFIGQVIEGLEPKALLGLIDENKKIIES 812

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+I L+ +  E +ASV I V++ L  + +AVDL R + + LGG GGGGRP MAQ GGPNG
Sbjct: 813 GVIALITV-NEGRASVAIGVSDSLKGKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNG 871

Query: 883 NKADQAIAGVASFLKK 898
           N+A QA+  V + L+K
Sbjct: 872 NEAAQALEAVKALLEK 887


>gi|330993337|ref|ZP_08317272.1| Alanyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329759367|gb|EGG75876.1| Alanyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 861

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/882 (47%), Positives = 561/882 (63%), Gaps = 31/882 (3%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           +PSSSL+P NDPTL+FTN+GMV FKN+FTGQE   Y   TT QK VRAGGKHNDLDNVG 
Sbjct: 1   MPSSSLVPHNDPTLLFTNAGMVQFKNVFTGQETRPYSRATTAQKVVRAGGKHNDLDNVGY 60

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK 142
           T RHHTFFEM+GNFSFG YFK  AI+LAW L+T  F L + +L  TVY +DEEA  LW++
Sbjct: 61  TARHHTFFEMMGNFSFGDYFKAEAIELAWKLVTGTFGLPKEKLLTTVYADDEEAASLWRR 120

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP-GSSEEGERYIEIW 201
           I+GLS D+IIRI T+DNFW M +TGPCGPCSEIF+D G  + GG P    E+G+R+ EIW
Sbjct: 121 IAGLSDDRIIRIPTSDNFWRMGDTGPCGPCSEIFYDHGPEVAGGPPGSPDEDGDRFTEIW 180

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           NLVFMQ+ +     R  LP+ SIDTG+GLER A +LQ K +NYD D F+ LI AS +VTG
Sbjct: 181 NLVFMQYFENPPGTRSPLPRPSIDTGLGLERFAAILQGKRDNYDTDTFRALILASAEVTG 240

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
              +G    +HRV+ DHLRS+SFLIADG+LP+ +GRGYVLRRIMRRAM +  ++G TEP 
Sbjct: 241 QDPDGPFNASHRVVADHLRSTSFLIADGVLPSKDGRGYVLRRIMRRAMRHLHMMGTTEPT 300

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+PAL  +MG AYPEL+ A+ LIE T++ E+ERF   LDRGL LL      LG    
Sbjct: 301 FYKLVPALIRQMGEAYPELVHARALIEGTMKGEEERFKAMLDRGLSLLADETERLGDGAP 360

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L GDVAFKLYDT G PLD+ QD L       +D+  FN A+E QR RARA   G G   T
Sbjct: 361 LPGDVAFKLYDTFGFPLDLTQDALRGSSH-NVDVAGFNAAMEVQRKRARAAWSGSGDSAT 419

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
           E +WF  ++ +GAT+F+GY                        T    + V+ ++     
Sbjct: 420 ETVWFEARDTFGATEFLGYT-----------------------TETSDAEVQTVIVDNAQ 456

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           VE A  G KV ++ +QTPFY E+GGQ+GDTG     G+ + ITD QKK   + VH+  V 
Sbjct: 457 VESAGPGTKVALLLNQTPFYGESGGQVGDTGTITAPGLHIAITDTQKKLGDLLVHYGTVI 516

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++  M++   +D+  R  +  +HSATHLLH A+   LG+HV+Q GS   PD LRFDV
Sbjct: 517 EGTVKPGMAVTAQVDHDRRSAIRAHHSATHLLHEAMRRRLGAHVTQKGSLNAPDRLRFDV 576

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +  +PIT  EL  IE  VN  I +N  V TR M  E+AI  GA AL G KY D VRVVS+
Sbjct: 577 SQPRPITPEELADIEAEVNARIRENTDVTTRHMTPEEAIEQGAMALFGEKYGDEVRVVSM 636

Query: 682 EYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
              + G    S  LCGGTHV  TG+I L  I SES + +G+RRIEA+TG  A++  +  +
Sbjct: 637 GGPEEGRAGWSIELCGGTHVRRTGDIGLFRITSESGVSSGVRRIEAVTGLAAQNATIATE 696

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNF 796
           E+L  +A+ L+V       R+  + EE + ++   +  + +L        S   +  +  
Sbjct: 697 ERLNQIAAMLRVPPAETPERLAVLLEERKVMERQISDLQRKLASGSQAAASIVDVGGIKL 756

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
            +  + E+ +KELK + D+L+K+I SG+I+L+  + + K S+++  T DL ++ +AV L 
Sbjct: 757 DARNVGELPAKELKPLADSLRKEIGSGVIVLISTA-DGKGSIVVAATPDLGEKVDAVALV 815

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           R ++  +GG GGGGR  MAQ+GGP+  + + A+  V + L++
Sbjct: 816 RAASTAMGGKGGGGRRDMAQAGGPDTTRVEAALEAVRAALQQ 857


>gi|229592147|ref|YP_002874266.1| alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|229364013|emb|CAY51570.1| alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 872

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/891 (42%), Positives = 524/891 (58%), Gaps = 53/891 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGK++DL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW  LT    L 
Sbjct: 61  TSSQKCVRAGGKNSDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWTFLTGVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY  D+EA+ +W +  G+  +++IRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KEKLWVTVYATDDEAYDIWTQQIGVPVERMIRIGDNKGAPYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLER+
Sbjct: 181 IFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + V+Q   +NY+IDLF +L+ AS    G      +  + +V+ DH+RS  FLIADG+LP+
Sbjct: 241 SAVMQHVHSNYEIDLFTNLLSASAAAIGCA--NESQSSLKVVSDHIRSCGFLIADGVLPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA  +   LG T      ++ AL  EMG A+PEL Q +  IE  L++
Sbjct: 299 NEGRGYVLRRIIRRACRHGNKLGATGSFFYKIVAALVAEMGEAFPELKQQQGNIERVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F KTL+ GL +L+  L+ L    ++ GDV FKLYDT+G P+D+  DI   R L  I
Sbjct: 359 EEEQFSKTLEHGLKILEQDLAELK-GTVVPGDVVFKLYDTYGFPMDLTADIARERELT-I 416

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR RAR+ S           + +L +    T+F GY    G+       
Sbjct: 417 DEAGFEREMEAQRVRARSASSFG------LDYNTLVKVDVPTEFTGYKATVGA------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + + A+ + G+ V+    G +  VV DQTPFYAE+GGQ+GD G 
Sbjct: 464 ----------------AKIVALYKDGKSVDVLSEGDEAVVVLDQTPFYAESGGQIGDCGF 507

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D  K     F+HH ++  G L     +   +D   R   ++NHSATHLL
Sbjct: 508 LSSTSGRFEVRDTTKTGG-AFLHHGVLVLGNLTVGAPVDTQVDADVRHATALNHSATHLL 566

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   ++K++ED VN  I +N  V T  
Sbjct: 567 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDVVNAEIRRNTAVETEE 626

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D VRV+S+    GG  S  LCGG H + TG+I LL I+SE
Sbjct: 627 TDIETAKAKGAMALFGEKYGDNVRVLSM----GGDFSVELCGGIHANRTGDIALLKIISE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R L+  
Sbjct: 683 GGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALEKQ 742

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + + +           S   + DV  ++  +   D K L +++D L+ K+   +I+L 
Sbjct: 743 LEQLQAKAASAAGDDLSASAVDVKDVKVLAARLDGQDGKALLALVDQLKNKLGRAVILLG 802

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +  E K  ++  VT+DL  +  A DL + +A  +GG G GGRP MAQ GG
Sbjct: 803 SVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKG-GGRPDMAQGGG 851


>gi|56696902|ref|YP_167264.1| alanyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
 gi|81558517|sp|Q5LRU1|SYA_SILPO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56678639|gb|AAV95305.1| alanyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
          Length = 890

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/914 (47%), Positives = 564/914 (61%), Gaps = 44/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F K GH ++PSS L+P NDPTLMFTNSGMV FKN FTG +K  Y  
Sbjct: 1   MPSLNDIRSTFLNYFAKQGHTIVPSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T++FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELITRDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY  D+EAF++WKK  G+   +IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 PKDRLYTTVYHTDDEAFEIWKK-VGVPESRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEKFEDGSMVDLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   T +   G+  V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKALIEASADATSVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+  L  +MG+AYPEL +A+ LIEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVRTLVGQMGAAYPELGRAQALIEETLLLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L ++  L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELTALPEEAPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G  T   IWF + +  GAT F+GYD                  
Sbjct: 419 AAMAEQKAKARAAWAGSGESTDNAIWFDVLDVAGATDFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T        A+V  G + +    G    VV +QTPFY E+GGQ+GDTG       
Sbjct: 461 -----TEKAEGQALALVVDGALSDRIAEGGSGWVVTNQTPFYGESGGQVGDTGVIRRLEN 515

Query: 540 R----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           R    L     +     ++ H   +ERG L    ++ L +D+  R  +  NHSATHLLH 
Sbjct: 516 RDHVALVEDSRKFADGKVYAHKVTMERGALAKGDAVELEVDHARRSAIRANHSATHLLHE 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS    D LRFD +H+K +T AEL  +   VN  I QN  V TRIM 
Sbjct: 576 ALREALGDHVAQRGSLNAADRLRFDFSHAKALTEAELAQVGAEVNRFIRQNSRVETRIMT 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLY 709
            +DA A GA AL G KY D VRVVS+         DG   S  LCGGTHV+ TG+I +  
Sbjct: 636 PDDARAIGAQALFGEKYGDEVRVVSMGRAETGKGADGKTWSIELCGGTHVAQTGDIGMFV 695

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ +S+  AG+RRIEA+TGQ A  HL  +  +L  + + LK     V  RV  + +E + 
Sbjct: 696 LLGDSASSAGVRRIEALTGQAAFDHLSQEGARLSQVTAMLKAQPAEVAERVRALMDERKA 755

Query: 770 LQLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           LQ   A+ +  L              H++  V F++ ++S V  K+L +++D  + ++ S
Sbjct: 756 LQNEVAQLRRDLAMAGGAGQGGGAETHEVGGVPFLAQVLSGVSGKDLPALIDEHKSRMGS 815

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G ++L+  +  K A     VTEDL  R +AVDL + +   LGG GGGGRP MAQ GG + 
Sbjct: 816 GAVLLIADAGGKAAV-AAGVTEDLTARVSAVDLVKAAVAALGGKGGGGRPDMAQGGGQDA 874

Query: 883 NKADQAIAGVASFL 896
            KAD AI      L
Sbjct: 875 GKADAAIKAAEQVL 888


>gi|190573725|ref|YP_001971570.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|205830222|sp|B2FL33|SYA_STRMK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|190011647|emb|CAQ45266.1| putative alanyl-tRNA synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 882

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/892 (42%), Positives = 533/892 (59%), Gaps = 49/892 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ LW+ + G+  ++I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGVPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI+ + ++TG         + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    L+P L  +MG AYPEL  A   +   L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAVDTVTRALQAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V      + ++ G  AF+LYDT+G PLD+ QDI   R L  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAGKAS-NGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I  F+ A+E+QR  ARA       G    +   L      T F+GYD L+          
Sbjct: 424 IAGFDAAMEQQRETARAAGKF---GGGVTLPAELVATLSPTLFLGYDRLQADGL------ 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++ G  V+ A +G  V V+ +QTPFYAE+GGQ+GDTG  
Sbjct: 475 ----------------TVLALLKDGRPVQSADAGDAVIVITNQTPFYAESGGQVGDTGVL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G+RL + D QK A     H   +  G L+    L   +D + R    +NHSATHLLH
Sbjct: 519 TGNGVRLAVDDTQKFAGQFHGHVGTLSEGGLKVGDVLSGQVDGERRGATILNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS + PD LRFD +H +PI++ EL  IE  VN  +  N       M
Sbjct: 579 AALREVLGSHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHNM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 639 GMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  ++  ++ +L   A  L  S  +VV ++  + +  ++L+   
Sbjct: 694 GVSAGVRRIEAVTGQGALDYVDAEEARLAEAAELLGGSAADVVEKIRALGQRQKQLEREL 753

Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K ++             ++A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 754 EAVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAVIVLAG 813

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ KA+++  V    + +  A +L    A  + GG GGGRP +AQ GG +
Sbjct: 814 A-QDGKAALVAGVNGSAMGKVKAGELLSHIASQI-GGKGGGRPDLAQGGGED 863


>gi|91788770|ref|YP_549722.1| alanyl-tRNA synthetase [Polaromonas sp. JS666]
 gi|123355561|sp|Q129G8|SYA_POLSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91697995|gb|ABE44824.1| alanyl-tRNA synthetase [Polaromonas sp. JS666]
          Length = 878

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/909 (40%), Positives = 529/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR +FL+FF   GH ++PSSSL+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 11  TVADIRKSFLDFFASKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRAA 70

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT  + L  
Sbjct: 71  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTDVYKLPA 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY +D+EA+ +W K  GL  ++++RI  N       DNFW MA+TGPCGPCSEI
Sbjct: 131 DKLWATVYIDDDEAYDIWTKEIGLPPERVVRIGDNKGAKYASDNFWMMADTGPCGPCSEI 190

Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS E +G+RYIEIWN VFMQF+ Q       LP   +DTGMGLER+A
Sbjct: 191 FYDHGPEIAGGPPGSPEQDGDRYIEIWNNVFMQFDMQPDGSVKPLPAPCVDTGMGLERLA 250

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG K    N  + RVI DH+R+++FL++DG+ P+N
Sbjct: 251 AILQHVHSNYEIDVFDALIKAAARETGEKD--LNNKSLRVIADHIRATAFLVSDGVNPSN 308

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L   MG AYP+L   +  I   L++E
Sbjct: 309 EGRGYVQRRIIRRAIRHGYKLGKKTPFFHKLVADLARLMGDAYPKLRTDEARITAVLKAE 368

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL+ G+ +LD  L+  G  ++L GDVAFKL+DT+G PLD+  D+   RG   +D
Sbjct: 369 EERFFETLEIGMTILDTALA--GGAKVLPGDVAFKLHDTYGFPLDLSADVCRERG-VDVD 425

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A++ Q+++ARA           K+  +L+       F GY+ L           
Sbjct: 426 ETGFNAAMDRQKNQARAAGKF-------KMDRALEYAGSGNTFTGYERLE---------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + A+   G  V     GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 469 -------------ETAKIVALYADGVPVAALTKGQSGVVVLDTTPFYAESGGQVGDEGEL 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I       + D  K    ++ HH  VE+G L     +   ++   R     NHSATHL+H
Sbjct: 516 ISGSAHFAVGDTLKIKSDVYGHHGTVEQGTLNVGDHVNARVNLAVRAATVRNHSATHLMH 575

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T  +++ IE  VN  I  N+     +M
Sbjct: 576 KALREVLGEHVQQKGSLVNAERTRFDFAHNAPVTDDQIREIEARVNAEILSNVATDASVM 635

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY D+VRV+S+        S  LCGGTHV+ TG+I L  IV+ES
Sbjct: 636 DMEAAQKTGAMMLFGEKYGDKVRVLSIGS------SKELCGGTHVTRTGDIGLFKIVAES 689

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RR+EA+TG+ A ++L   +  +++ A  LK S   +  R+ ++ ++ + L+   
Sbjct: 690 GVAAGVRRVEAVTGENALAYLQSLESTVQAAAGSLKASPTELQQRIGQVLDQVKSLEKEI 749

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L              +  +  ++  +   D++ L+  MD L+ K+++G+ +L  
Sbjct: 750 AALKGKLASSQGDELMAQAFDVKGLKVLAARLEGADARTLRETMDKLKDKLKTGVFVLAA 809

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +    K  +   VT D +    A +L    A+ +GG G GG+  MA +GG + ++ D A+
Sbjct: 810 VDGN-KVQIAAGVTADSVTVVKAGELVNFVAQQVGGKG-GGKADMAMAGGTDASRLDDAL 867

Query: 890 AGVASFLKK 898
             V +++ +
Sbjct: 868 KSVRAWVTE 876


>gi|218780784|ref|YP_002432102.1| alanyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|218762168|gb|ACL04634.1| Alanyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 875

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/908 (39%), Positives = 535/908 (58%), Gaps = 45/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R+ FLE+F+KN H ++ SSSL+P +DPTL+FTN+GMV FK  F G++K  Y   
Sbjct: 1   MTGNEVRSAFLEYFKKNDHRVVKSSSLVPQDDPTLLFTNAGMVQFKRTFLGEDKRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+L+WDLL  +F L 
Sbjct: 61  ATSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKELAIELSWDLLVNKFGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L++++Y +D+EA  LW+   G+  ++I+R+   DNFWSM +TGPCGPCSEI  D+GE
Sbjct: 121 ADKLWVSIYLDDDEAGLLWRDKIGVPEERIVRLGEKDNFWSMGDTGPCGPCSEIHIDRGE 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+EIWNLVFMQ+ +    +   LP+ SIDTGMGLER+ ++LQ 
Sbjct: 181 AFGCDSPDCAVGCDCDRYLEIWNLVFMQYNRDETGKMTPLPRPSIDTGMGLERICSILQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              NY  DLF  +     +++G K      + V  +VI DH R+++FL+ DGILP+NEGR
Sbjct: 241 ADTNYGTDLFTPIFNRIGELSGKKLGDSKTDDVCMKVIADHSRAAAFLVGDGILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA+ Y R LG+ +  +   + A+C  MG AYP+L + +  I   + +E+ R
Sbjct: 301 GYVLRRIMRRAIRYGRQLGFNKSFLHETVAAVCDSMGGAYPDLTEGRSFITNVIVNEENR 360

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD+GL +L+  L  +    ++ ++G+V FKLYDT+G P+DI++D++  +G   +D 
Sbjct: 361 FSETLDKGLSVLNDALGEMEAKGEKEISGEVIFKLYDTYGFPVDIVEDVVRDKG-IVLDR 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++EQ+ ++R+     G+G   + + SL  +    +F GY    G          
Sbjct: 420 DGFETRMKEQKEKSRSTVAFEGAG---EAFASLSSQGIKCEFQGYHGTSGC--------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  +V+ G+ V+EA +G  V VV + TPFY E+GGQ+GD G   
Sbjct: 468 --------------SKVLLVVKDGKEVQEAQAGDAVSVVTEATPFYGESGGQMGDLGVIT 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG+ L++    K   G+ +H   V +G +    ++ L +D   R+  + NH+ATHLLH 
Sbjct: 514 ADGLELEVVKTLKDPTGLIIHEGKVVKGKIAKGQNVDLKVDEAARQATARNHTATHLLHA 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q GS + P+ LRFD TH  P+T  E   IE  VN+ I  NL V T  M+
Sbjct: 574 ALREVVGDHVKQAGSLVGPERLRFDFTHFSPLTPEETVKIETLVNERIRDNLDVNTVEMD 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A  SGA AL   KY D VRVVS+E       S  LCGGTH   +G++    IV ESS
Sbjct: 634 ADQARESGAMALFEEKYGDTVRVVSMEG-----FSKELCGGTHTERSGDVGFFVIVGESS 688

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG  A  ++ G    L  ++  LK     +  ++E++  + ++ +    
Sbjct: 689 VAAGVRRIEALTGAGAVEYVHGLMSNLNKVSGLLKEKPETLPDKIEKLLAQNKQQEKEIN 748

Query: 776 KRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K ++  +     D    ++     ++  +       ++ + D  + K+QSGI++L G 
Sbjct: 749 ALKAKIAAKASESVDDEIREVRGAKMIAKKVEVDSPAAMRDLADKFRDKLQSGIVVL-GS 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               KA ++++VT+DL  +F A ++ +  AK +GGGG GGRP MAQ+GG       QA+ 
Sbjct: 808 EVNGKALLIVMVTKDLTKQFQAGNIIKHVAKEVGGGG-GGRPDMAQAGGSKPENLSQAME 866

Query: 891 GVASFLKK 898
                +++
Sbjct: 867 KAYQIVEE 874


>gi|310815943|ref|YP_003963907.1| alanyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
 gi|308754678|gb|ADO42607.1| alanyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
          Length = 868

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/868 (49%), Positives = 565/868 (65%), Gaps = 40/868 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL F+ +NGH ++PSS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 24  MTSLADIRSTFLNFYARNGHTIVPSSPLVPRNDPTLMFTNSGMVQFKNTFTGVETRDYVR 83

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTK+F +
Sbjct: 84  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKESAIPFAWELLTKDFGI 143

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ RL +TVY  D+EA  +WKK++GLS D+IIRI TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 144 NKDRLLVTVYHTDDEAANIWKKVAGLSDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 203

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG P    E+G+R+IEIWNLVFMQFEQ     R  LPK SIDTGMGLER+  +LQ 
Sbjct: 204 DHIAGGPPGSPDEDGDRFIEIWNLVFMQFEQFEDGSRTGLPKPSIDTGMGLERIGALLQG 263

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 264 KHDNYDTDLMRALIEASAHATSNDPDGPGKVHHRVIADHLRSTSFLIADGVMPSNEGRGY 323

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  EMG+AYPEL +A+ LIEETLR+E+ RF 
Sbjct: 324 VLRRIMRRAMRHAHMLGAKDPVMYRLVPALVREMGAAYPELNRAQALIEETLRAEETRFK 383

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L  D  L G  AFKLYDT+G PLD+ QD L  +    +D   F 
Sbjct: 384 QTLDRGLRLLDDELGQLPGDAALPGATAFKLYDTYGFPLDLTQDALREKNRT-VDTDGFT 442

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      +WF L E+ G T+F+GYD L+               
Sbjct: 443 AAMNEQKAKARAAWAGSGEQADASVWFDLVEQNGTTEFLGYDTLQ--------------- 487

Query: 480 PPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                       V AIV   G ++E A  G +V+VV +QTPFYAE+GGQ+GD G    D 
Sbjct: 488 --------AEGQVTAIVAPAGALMERAEIGAQVQVVLNQTPFYAESGGQVGDAGLLRTDT 539

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++TD  KK  G F H   V  G +      VLT+D   R Q++ NHSATHL++ AL 
Sbjct: 540 GVIEVTDT-KKHAGAFAHIGTVREGFVAVGQGAVLTVDATRRGQIAANHSATHLVNEALR 598

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS   PD LRFD +H+K +++ E+  ++ +VN  I QN PV TR+M  ++
Sbjct: 599 AALGDHVAQRGSLNAPDRLRFDFSHNKALSADEIAKVQADVNAYIRQNTPVETRVMTPDE 658

Query: 659 AIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           A   GA AL G KY D VRVVS+          D   +S  LCGGTHV+  GEI    ++
Sbjct: 659 ARDLGAQALFGEKYGDEVRVVSMGRLDGSNKGVDKNTYSLELCGGTHVTRLGEIGAFVLL 718

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           S+S+  AG+RR+EA+TGQ A  HL  Q+  L S+AS LK S  +VV RV  + +E + L 
Sbjct: 719 SDSASSAGVRRVEALTGQAALDHLAAQEAALISVASLLKTSAADVVERVRALVDERKALS 778

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A+ +  L +      D++      V+  + ++S V  K+L +++D+ + ++ SG+++
Sbjct: 779 NEVAQLRRDLAMAGGAKNDVAIRDAGGVSLQAQLLSGVTGKDLPALVDSFKSELGSGVVL 838

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVD 854
           L+    + KA+V   VT DL D+ +AV+
Sbjct: 839 LIA-DVDGKAAVAAGVTADLTDKVSAVE 865


>gi|205830260|sp|A5D3F4|SYA_PELTS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 877

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/909 (39%), Positives = 548/909 (60%), Gaps = 49/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++L+FF+K GH++LPS+SLIP NDP++++T +GMVPFK  FTG  KP Y  V
Sbjct: 1   MTGNEIRESYLKFFEKKGHKILPSASLIPLNDPSILWTAAGMVPFKPFFTGAAKPEYTRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+++VG+T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L 
Sbjct: 61  TTCQKCIRT----PDIESVGKTARHHTFFEMLGNFSFGDYFKESAIPWAWEFVTEHLRLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+I+++ +D+EAF++W K  G+ A +I+R+  + NFW +   GPCGPCSEI+ D G 
Sbjct: 117 ADKLWISIFLDDDEAFEIWNKTVGVPAGRIVRMGKDTNFWEIG-VGPCGPCSEIYVDLGA 175

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++EIWNLVF+QF +  +     L    IDTG GLER+A+V+Q 
Sbjct: 176 ERGCGSPECKVGCDCDRFLEIWNLVFIQFFKDEEGNYTPLTSKGIDTGFGLERVASVMQG 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N+D DLF+ ++  +  + G+KY  +G   V  +VI DH R+ +F +ADG LP+NEGR
Sbjct: 236 VPTNFDTDLFREIMDFTAGLFGLKYGVDGRVDVALKVIADHCRAITFAVADGALPSNEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + RLLG  +P +  +  A+  +MG  YPEL+  +  +   +R E+ER
Sbjct: 296 GYVIRRLLRRAVRFGRLLGIEDPFLHEVSGAVVRQMGRVYPELVTQREHVFRVIRREEER 355

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           FG+TL +G  +L+ +++   +    +++G+ AF+LYDT+G PL++ Q++   +GL  +D 
Sbjct: 356 FGETLAQGTEMLNRLIAEARQAGSAVVSGEDAFRLYDTYGFPLELTQEMAGEQGLT-VDT 414

Query: 416 ISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F +A+EEQR RAR+           + ++  ++E+ G T F+GYD L           
Sbjct: 415 DGFGRAMEEQRQRARSARQETDYISGRDAMFKKMREEVGETVFVGYDALE---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         +  V  IVQ G+ +E A +G++VE + D TPFYAE+GGQ+ D G  
Sbjct: 465 -------------ATGRVLRIVQGGKRLESAQAGEEVEFILDVTPFYAESGGQVSDRGKV 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
               + ++I +V K  E +FVH   V  GIL+   ++   +D   R     NHSATHLLH
Sbjct: 512 TAADLEVEIHEVTKPVENLFVHRGKVVAGILKEHDTVTARVDPARRAATCRNHSATHLLH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS + P+ LRFD TH    T  EL+ +E+ VN ++   LPV     
Sbjct: 572 KALKEVLGGHVNQAGSLVEPERLRFDFTHYAAATPEELQKVEELVNRMVLSALPVEAFET 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +  +A   GAAAL G KY +RVRVV +     G  S  LCGGTH+ +T E+ L  ++ ES
Sbjct: 632 SLAEARKMGAAALFGEKYGERVRVVKM-----GDFSLELCGGTHLRNTAEVGLFKLLGES 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG+ A S++  ++E+L  +A  +K +    V RVE + +  R L+  +
Sbjct: 687 SVGAGLRRIEAVTGEGALSYVKAKEEQLAEIARLVKAAPHEAVRRVEGLLQTVRDLEAEN 746

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              + +L    +        ++  V  ++   +  D   L+ ++D L+ ++ SG+I+L G
Sbjct: 747 EALQARLARYQVQDLMDRLREVKGVKVLAGQAAAPDMDSLRGMVDLLRDRVGSGVIVL-G 805

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + E + +++  VT+DL+++  +A  L +  A V+GGGG GGRP MAQ+GG + ++  +A
Sbjct: 806 SAGENRVNLVAAVTKDLVEKGLHAGKLVKELAPVVGGGG-GGRPEMAQAGGKDPSRLKEA 864

Query: 889 IAGVASFLK 897
           +      ++
Sbjct: 865 LEKTYKAVE 873


>gi|254450715|ref|ZP_05064152.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 238]
 gi|198265121|gb|EDY89391.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 238]
          Length = 884

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/893 (47%), Positives = 565/893 (63%), Gaps = 40/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++S IR+TFL+++ + GH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   YQ 
Sbjct: 1   MTSLSDIRSTFLDYYARQGHAVVASSPLVPRNDPTLMFTNSGMVQFKNRFTGVESGDYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+F +
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWNLLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA+ LWKK  G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLVTVYHTDDEAYDLWKK-IGVPEDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG P    E+G+R+IEIWN+VFMQ EQ +      L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPDEDGDRFIEIWNVVFMQNEQFDDGTLKPLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLF+ LI+AS   T     G+  V+HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 240 GHDNYETDLFRALIEASAHATSTDPFGDQNVHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG+AYPEL   + LIE+TL +E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHILGSKDPVMHRLVPALVQQMGAAYPELGLGQTLIEDTLLNEEVRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD  L  + +   L+GD AFKLYDT G PLD+ QD L  +G  G+D   F 
Sbjct: 360 TTLDRGLKLLDDALVDVPEGSDLSGDTAFKLYDTFGFPLDLTQDALREQGR-GVDTDGFK 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+++ARA   G G+     IWF + +K G+T+F+GY+                  
Sbjct: 419 AAMDAQKAKARAAWTGTGASADAAIWFDIADKQGSTEFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + AIV   + V+ A  G  V ++F+QTPFY E+GGQ+GD G    D  
Sbjct: 461 -----TETAQGQLLAIVSDTDPVDSASKGDCVALIFNQTPFYGESGGQVGDEGTVKTDTG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  KK  G+F+H A V  G +       L +D   R  +  NHSATHLL+ AL  
Sbjct: 516 TARITDT-KKVVGLFLHMAEVTSGTITKGQGSELVVDPARRAAIRANHSATHLLNEALRV 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS    D LRFD TH+  +TSAEL  +E +VN  + QN  V TRIM  +DA
Sbjct: 575 ALGDHVVQRGSLNAADRLRFDFTHTGAMTSAELTQVEQDVNRYVQQNTAVSTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+         +G  +S  LCGGTHV+ TG+I +  + SE
Sbjct: 635 RAIGAQALFGEKYGDEVRVVSMGRAKTGKGAEGLTYSLELCGGTHVARTGDIGMFALTSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            +   G+RRIEA+TGQ A ++L  +DE L  +   LK    +V  RV+ + +E + L   
Sbjct: 695 RASSDGVRRIEALTGQTAMTYLRTRDETLGDVEGMLKAKGADVASRVKALMDERKALANE 754

Query: 774 HAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            A+ + ++ +   +         I  + F + ++  +  K+L +++D ++  + SG I+L
Sbjct: 755 VAQLRREVAMGGGAKDEGPQAKTINGIAFKAQVMQGITGKDLPAMIDEMKSVMGSGAILL 814

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +    + KA+V   VT DL+D+ +AVDL R +   LGG GGGGRP MAQ GG 
Sbjct: 815 IA-DGDGKAAVAAGVTADLVDKVSAVDLVRAAVAELGGKGGGGRPDMAQGGGK 866


>gi|152979781|ref|YP_001352273.1| alanyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|205830071|sp|A6SVH6|SYA_JANMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151279858|gb|ABR88268.1| alanyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 869

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/910 (40%), Positives = 528/910 (58%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N S IR  FL+FF+  GH ++ SS L+P NDPTLMFTNSGMV FK++F G++K  Y   
Sbjct: 1   MNSSEIREKFLKFFESKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A++ +W+LLT+ + L 
Sbjct: 61  TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALKWSWELLTQVYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSE 174
             +L  TVY ED+EAF +W K  GL  +++IRI         +DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLLATVYIEDDEAFDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG P    E+G+R+IEIWN VFMQF+         LP   +DTGMGLER+
Sbjct: 181 IFYDHGPHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVKPLPAPCVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+ID F+ LI+A+ + T  K   NN  + +VI DH+R+++FL+ADG++P+
Sbjct: 241 AAILQHVHSNYEIDTFEALIKAAGRETNTKDLSNN--SLKVIADHIRATAFLVADGVIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV RRI+RRA+ +   LG  +P    L+  L  +MG AYP+L      I + L++
Sbjct: 299 NEGRGYVQRRIIRRAIRHGYKLGQKKPFFHKLVKDLVEQMGEAYPKLKADAQRITDVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +TL  G+ +LD  L+  G  ++L G+VAFKL+DT G PLD+  D+   RGL+ +
Sbjct: 359 EEERFFETLANGMEILDAALA--GDAKVLPGEVAFKLHDTFGFPLDLSADVCRERGLS-V 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+E+Q++  RA           K+  +++       F GY+ L          
Sbjct: 416 DEAGFAAAMEKQKAAGRAAGKF-------KMERAVEYTGAGNTFTGYEHLE--------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  +  +G  V     GQ   VV D TPFY+E+GGQ+GD G 
Sbjct: 460 --------------EQATVVGLYFEGTAVPSLKEGQAGIVVLDTTPFYSESGGQVGDQGF 505

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +G++  + D QK    ++ HH +  +G L     +   +D   R     NHS TH++
Sbjct: 506 ISAEGVQFGVEDTQKIKADVYGHHGVQTQGTLTVGDKVKAAVDGARRAATMRNHSVTHIM 565

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD  RFD  H+ P+T  ++  IE  VN  I  N     R+
Sbjct: 566 HKALREVLGDHVQQKGSLVDPDKTRFDFAHNAPVTREQILEIEKRVNAEILLNSDTQARV 625

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A  +GA  L G KY + VRV+ +        S  LCGGTHVS TG+I L  ++SE
Sbjct: 626 MDIESAQKTGALMLFGEKYGETVRVLDIGS------SRELCGGTHVSRTGDIGLFKVMSE 679

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RRIEAITG +A  ++   +  + S A+ +K     +  R+ ++ ++ + L+  
Sbjct: 680 SGVAAGVRRIEAITGAKALGYVQDLEAVIHSAAAMMKTQPAELEPRLAQVLDQMKALERE 739

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L              +  +  ++ ++   D   L++ MD L+ K+++  I+L 
Sbjct: 740 VGALKGKLASSQGDELLAQAVDVKGIKVLAAVLEGADVATLRNTMDKLKDKLKTAAIVLA 799

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K S++  VT D + +  A DL    A+ +GG G GG+P MAQ+GG + +    A
Sbjct: 800 AV-NDGKVSLIAGVTADSIAKVKAGDLVNFVAQQVGGKG-GGKPDMAQAGGTDASGLPTA 857

Query: 889 IAGVASFLKK 898
           + GVA+++ +
Sbjct: 858 LQGVAAWVGE 867


>gi|254460942|ref|ZP_05074358.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2083]
 gi|206677531|gb|EDZ42018.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium HTCC2083]
          Length = 887

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/896 (48%), Positives = 576/896 (64%), Gaps = 41/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F+K GH ++PSS L+P NDPTL+F NSGMV FKN+FTG E   Y  
Sbjct: 1   MASLNDIRSTFLNYFEKQGHAIVPSSPLVPRNDPTLLFANSGMVQFKNLFTGLESRDYAR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT EF++
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKAEAIAYAWELLTVEFNI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY  D+EA  +WKK++GLS D+IIRI T+DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKERLLVTVYHTDDEAADIWKKVAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEQFEDGTMKPLEMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T +  +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 KHDNYDTDLMRSLIEASADATSVDPDGPTKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG+A+PEL QA+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVRQMGAAFPELGQAQALIEETLRLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD  L  L + ++ +GD AFKLYDT G PLD+ QD L  +G    D+  FN
Sbjct: 361 KTLERGLKLLDDELVGLPEGQVFSGDAAFKLYDTFGFPLDLTQDALREKGREA-DVDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+E Q+++ARA   G G      IWF + + +GAT F+GYD                  
Sbjct: 420 QAMEAQKAKARAAWSGTGEAADSAIWFDIVDAHGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      +  +V  G   + A +GQ+V+++ +Q+PFYAE+GGQ+GD G    +  
Sbjct: 462 -----TETAEGQIATLVMDGAEADAAKAGQEVQIILNQSPFYAESGGQVGDKGIIKTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++D  KK++G+ +H A V+ G +    + +L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 TAVVSDT-KKSQGVIIHTATVQDGEIIKGSAAILEVDHGRRTAIRANHSATHLLHEALRA 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +HS  ++S +L  +E +VN  I QN PV TRIM  +DA
Sbjct: 576 ALGDHVAQRGSLNAEDRLRFDFSHSAALSSEDLIKVEKDVNTYIRQNAPVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          +G  +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTQAGSGKGSNGQTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TG+ A  H+  QD +L  +AS LK    +V  RV+ + EE + L  
Sbjct: 696 DSASSAGVRRIEALTGEAALDHMRAQDLRLAKVASDLKAQAADVPARVKALLEERKALSN 755

Query: 773 IHAKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             A+ + +L +   +          +  +NF++ +++ V  K+L +++D  +  I SG +
Sbjct: 756 EVAQLRRELAMSGGAGQGGGAEAEVVNGINFVAQVLTGVSGKDLPALIDEHKAAIGSGAV 815

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +L+  +  K A     VT+D +   +AVDL + +   LGG GGGGR  MAQ GG +
Sbjct: 816 LLIADAGGKAAV-AAGVTDDTVATVSAVDLVKAAVVELGGKGGGGRADMAQGGGKD 870


>gi|86160202|ref|YP_466987.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496877|sp|Q2IG40|SYA_ANADE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|85776713|gb|ABC83550.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 905

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/935 (39%), Positives = 533/935 (57%), Gaps = 76/935 (8%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  F  +F+++GH  + SSSL+P NDPTL+FTN+GMV FK++FTG+E+  Y
Sbjct: 1   MKTPTAAEIRELFQRYFEEHGHRRVASSSLVPQNDPTLLFTNAGMVQFKDVFTGRERRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116
              TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+L+T   
Sbjct: 61  SRATTAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKADAIAWAWELVTSPA 120

Query: 117 EFDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
              + + RL  TV+        DEEAF+LWK   G+  ++I ++   DNFW+M +TGPCG
Sbjct: 121 WLGIAKDRLAATVFAGEGTLPWDEEAFELWKAQ-GVPVERIHKLGAKDNFWAMGDTGPCG 179

Query: 171 PCSEIFFDQGECIPGGLPG-------SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           PCSE+ + QG  +P             + + +R++EIWNLVFMQFE+        LPK S
Sbjct: 180 PCSELHYFQGNDVPCAEEQAGRKCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPS 239

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRS 281
           IDTG GLER+A V Q K +NYD DLF+ +I A E ++  +Y+  +    + RVI DH R+
Sbjct: 240 IDTGAGLERLAAVAQGKRSNYDTDLFRSIIHAVEGLSDKRYDAASDDGVSMRVIADHARA 299

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           ++FL+ DG+LP+NEGRGYVLRRIMRRA+ + + LG   P +  +  A+  EMG+AYPE  
Sbjct: 300 TTFLVGDGVLPSNEGRGYVLRRIMRRAIRHGKRLGLERPFLAAVCGAVIDEMGAAYPETR 359

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK----------------DEILNGD 385
           + +  IE+  + E+E F +TLD+GL +L+G +  L                    I++G 
Sbjct: 360 ENRAFIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDATHDGKPATPAPDRARPIIDGK 419

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
           VAF+LYDT G PLD+ + I   RG   +D   F++ + EQR+R+     G G    + + 
Sbjct: 420 VAFQLYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQRARS--EWKGSGEQGVDDLH 476

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
             +  + G  +F+GY+L                           + VKAI+  G  V  A
Sbjct: 477 KQIAGELGEVKFLGYELP-----------------------AARAQVKAILANGARVARA 513

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G KVE+V D TPFY E+GGQ+GD G   G G+ +++ D Q+   G+  H   V RG +
Sbjct: 514 GKGDKVEIVTDATPFYGESGGQVGDVGHITGAGLEIRVDDAQRPVPGLVTHVGEVLRGEV 573

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               ++ L++D + R  +  NHSATHLL  AL  +LG HV Q GS + PD LRFD +H +
Sbjct: 574 AVGDAVELSVDDRRRDLVRANHSATHLLQLALREVLGEHVKQAGSVVAPDYLRFDFSHFQ 633

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P+T  EL ++E  VN+++ +N    T ++  E+A  +GA  + G KY D VRVV +    
Sbjct: 634 PVTEEELAAVERRVNELVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIGP-- 691

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S  LCGGTHV  +G+I    I SE SI +G+RR+ A TG RA      + E+L+  
Sbjct: 692 ----SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRA 747

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHI 800
           A+ LK     V  ++E+     + L+    + + +               +     ++  
Sbjct: 748 AALLKAGALEVSQKIEQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAAR 807

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +   D K L+ + D L+ ++  G++ L G  ++ KA +L+ VT DL  R  A DL + +A
Sbjct: 808 VEG-DGKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAA 865

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           K++ GG GGG+P MAQ+GG +    ++A+  VA  
Sbjct: 866 KLV-GGSGGGKPDMAQAGGSDPAGLEKALEKVAEL 899


>gi|260574639|ref|ZP_05842642.1| alanyl-tRNA synthetase [Rhodobacter sp. SW2]
 gi|259023056|gb|EEW26349.1| alanyl-tRNA synthetase [Rhodobacter sp. SW2]
          Length = 882

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/891 (48%), Positives = 565/891 (63%), Gaps = 40/891 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFLEFFQ+NGH ++ SS L+P NDPTLMF NSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLEFFQRNGHRVVESSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT++FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPYAWELLTRDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  +WK+++GL   +IIRI T+DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKDKLLVTVYHTDDEAANIWKRVAGLPDSRIIRIPTDDNFWRMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  ++G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 DKIWGGPPGSADQDGDRFIEIWNLVFMQNEQFADGRLVPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRALIEASAHATSTDPDGEGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  +PLM  L+PAL  +MG AYPEL +A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHQLGAQDPLMHRLVPALVRQMGGAYPELTRAQALIEETLQLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL   LS + +   L G+ AFKLYDT+G PLD+ QD L  +G + +D   F+
Sbjct: 361 QTLERGLHLLADELSRIPEGAALPGEAAFKLYDTYGFPLDLTQDALREQGRS-VDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G     KIWF + E +G ++F+GYD                  
Sbjct: 420 AAMAEQKAKARASWAGSGETGDAKIWFQIAEDFGPSEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V  G  V+ A  G +V++V +QTPFYAE+GGQ+GD G    +  
Sbjct: 462 -----TETAEGQVLALVADGAAVQTA--GARVQIVVNQTPFYAESGGQVGDAGWIRTETG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             Q+TD +K A  +    A V  G +       L +D+  R  +  NHSATHLL+ AL  
Sbjct: 515 VAQVTDTKKAAGVVIHV-AEVTEGQISQGQPAKLEVDHSRRAAIRANHSATHLLNEALRR 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +T +EL  +E  VN +I QN PV TR+M  +DA
Sbjct: 574 ALGDHVAQRGSLNAADRLRFDFSHAKGMTPSELAQVEAEVNAVIRQNSPVETRLMTPDDA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+          DG  +S  LCGGTHV+  GEI    I+S
Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGALAGSGKGSDGQTYSLELCGGTHVARLGEIGSFLILS 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES+  +GIRRIEAITG+     +      L++ A+ L     ++  R++ +  E + LQ 
Sbjct: 694 ESASASGIRRIEAITGEGVLRDVRANYAHLEAAAAALGAVPADLAPRIKALMAERKALQN 753

Query: 773 IHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A+ + ++      E      I  V F++ ++S V  K+L  ++D ++ ++ SG ++L+
Sbjct: 754 EVAQLRREVAMGGRAEGPEAKDINGVKFIAQVLSGVSGKDLPGLIDEMKARLGSGAVLLI 813

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
                 K +V   VT DL+ R +AV L + +A+ +GG GGGGRP MAQ+GG
Sbjct: 814 A-DTGGKPAVAAGVTGDLVARLSAVALVKAAAEAMGGKGGGGRPDMAQAGG 863


>gi|254292635|ref|YP_003058658.1| alanyl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254041166|gb|ACT57961.1| alanyl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 897

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/907 (47%), Positives = 584/907 (64%), Gaps = 37/907 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           +V+ +R+ FLE+F  NGHE++ S+ L+P   D TL+F N+GMVPFKN+FTG E P +   
Sbjct: 15  SVNGVRSQFLEYFNSNGHEVVQSAPLVPQGGDSTLLFVNAGMVPFKNLFTGAETPAFLKA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+++TK F L 
Sbjct: 75  TSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIVHAWNVVTKVFGLP 134

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L +TV+ ED+EA  LWKKI+GLS DKIIRI+T+DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 135 VDKLVVTVFSEDDEAAMLWKKIAGLSDDKIIRISTSDNFWSMGDTGPCGPCSEIFYDHGP 194

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS  E+G+R+IEIWNLVFMQF+Q     R  LPK SIDTGMGLER+A VLQ  
Sbjct: 195 DVWGGPPGSPEEDGDRFIEIWNLVFMQFDQSKDGSRVSLPKPSIDTGMGLERIAAVLQGV 254

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            NNY+IDLF++LI A E V G+K     + + RVI DHLRSS+FLIADG+ P+NEGRGYV
Sbjct: 255 HNNYEIDLFQNLIAAEEDVYGLKQSEKTLGSLRVISDHLRSSAFLIADGVTPSNEGRGYV 314

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAM +  LLG  EP M  L+PAL  EMG A+PEL +A+  I  TL  E+ RF +
Sbjct: 315 LRRIMRRAMRHGHLLGSKEPQMHKLVPALVAEMGVAFPELGRAQASIVSTLEQEEGRFQR 374

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL RGL LL+   S +GK ++L G+ AFKLYDT G P+D+ QD+L A+G   +D + F +
Sbjct: 375 TLGRGLALLEDATSSMGKGDVLPGETAFKLYDTFGFPVDLTQDVLRAKG-IEVDEVGFEK 433

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A++ QR  ++A   G   G   K+WF  ++ +GAT+FIGY                    
Sbjct: 434 AMKVQRESSQASWQGAAEGDAVKVWFQTRDAHGATEFIGYSE------------------ 475

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI- 539
                    + +K I+  GE+   A  GQK E+VFD+TPFY E+GGQ GD G     G  
Sbjct: 476 -----EASEAELKTIIIDGELATTANEGQKAELVFDKTPFYGESGGQAGDRGEVRFAGGA 530

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QK+A  +F H   +  G ++  +  +L +D   R  +  NHSATH+LH AL  
Sbjct: 531 VFRVLDTQKRAGDVFSHIGEMVTGDIKAGVKALLEVDSVRRSNIRSNHSATHILHAALRN 590

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS +  D LRFD  HS  ++  EL  IE  VN +I QN  V T+ M  + A
Sbjct: 591 NLGDHVTQKGSLVEEDKLRFDFAHSGTLSQVELDKIEAEVNAVIRQNSEVSTKEMAPDAA 650

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++     G    +S  LCGG HV  TG+I +  I SES +
Sbjct: 651 IEAGAMALFGEKYGDSVRVLAMGEALEGGDKAYSVELCGGIHVRRTGDIAVFAITSESGV 710

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG  A  +L G+    +S+A  LK +      RV  + ++ R L+   + 
Sbjct: 711 SAGVRRIEAVTGAAALEYLKGKVAIARSIADQLKSTIEKAPERVAALQDQKRALENELSD 770

Query: 777 RKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            K +L +   +        +I  +  ++ +   V +K+L+ ++D  +K++ SG+ + V +
Sbjct: 771 AKKKLAMGASAGGAAAGPEEINGIKLLTRVADGVPAKDLRGLIDDAKKQLGSGVTVFVAV 830

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + KA+V   VT+DL D+ +AVDL +++A  +GG GGGGRP MAQ+GGP+G+KA+ A+ 
Sbjct: 831 -NDGKAAVATGVTDDLKDKISAVDLVKVAAAAVGGKGGGGRPDMAQAGGPDGSKANDAVD 889

Query: 891 GVASFLK 897
            V +FLK
Sbjct: 890 AVRAFLK 896


>gi|188996094|ref|YP_001930345.1| alanyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|205830234|sp|B2V709|SYA_SULSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|188931161|gb|ACD65791.1| alanyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 876

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/903 (39%), Positives = 533/903 (59%), Gaps = 41/903 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FL++F+  GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+  Y+  
Sbjct: 4   MTADEIRQSFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QK  R  GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+  ++ 
Sbjct: 64  ASCQKVFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFAWEYLTEHLEIP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L ++V++ED+EAF++W K  GL   KI R+   DNFWSM +TGPCGP SEI++D+GE
Sbjct: 124 KEKLLVSVFEEDDEAFEIWNKHIGLDESKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGE 183

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G     +E+  RY+EIWNLVFMQ+ +  K     LP  SIDTGMGLER+A+VLQ   
Sbjct: 184 KF-GNPEFGAEDDFRYLEIWNLVFMQYNRDEKGVLHPLPNPSIDTGMGLERIASVLQGVD 242

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           +NYD DLFK +IQ +E+V+G +Y     + +  RVI DHLR+ +FLI+DG+LPANEGRGY
Sbjct: 243 SNYDTDLFKPIIQFAEEVSGKEYGKNEKDDIAMRVIADHLRAITFLISDGVLPANEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ Y + LG  +P +   +  +  +M +AYPELIQ +  I+   +SE+E+F 
Sbjct: 303 VLRRIIRRALRYGKNLGIEKPFLYEGVDVVIEKMKTAYPELIQNRSFIKTITKSEEEKFI 362

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTL R + +L  ++          L G+  FKLYDT+G P+D+M++IL   G    D+I 
Sbjct: 363 KTLKRSMDILYQMIEQARKENRRHLTGEETFKLYDTYGFPIDLMEEILKDEGFT-FDLIE 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+  LEEQ+ RAR       S   + ++ +LK K    QF+GY+ L              
Sbjct: 422 FHNLLEEQKERARKSW-KSQSKEIKPVYLTLKNKLPENQFVGYETLTSE----------- 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S V AI++  ++V+ A  G+ +E+V D TPFY E GGQ+GD G   GD
Sbjct: 470 -----------NSKVLAIIKGDQLVDTAKEGEDIEIVLDITPFYPEKGGQIGDRGIIEGD 518

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D Q   +G+ VH   V  G ++    +    D + R  +  +H+ATHLLH AL
Sbjct: 519 EFLFEVLDTQTPVDGLIVHKGKVLFGSVKEGAYVRAKTDKERRENIMRHHTATHLLHAAL 578

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS ++ + LRFD TH + +T  ELK++E+ VN  I +N  VV + M  E
Sbjct: 579 RNVLGDHVKQAGSLVSDEYLRFDFTHFESMTDEELKAVEELVNREIMKNEEVVCQEMQYE 638

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+ SGA A+   KY D VRV+S         S  LCGGTHV  TG+I    I+SES++ 
Sbjct: 639 EALKSGAMAIFEEKYADVVRVISAG------ISKELCGGTHVKRTGDIGYFKILSESAVS 692

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G RRIEA+ G +A    + +   +K L+  L   +  ++ RV ++  + ++ +      
Sbjct: 693 SGTRRIEAVAGIKAVEKGLQEHYIIKDLSRLLTAKEDQLLDRVLKLQNQIKEKEREIENL 752

Query: 778 KLQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           + +L +    E+L+  +          +  ++  EL+ + D L++K+   +I++     E
Sbjct: 753 RKKLALSNINENLNIIEKEGFKVAYVSVENLNPNELREIADHLRQKLGKSVILVASKDAE 812

Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K K + ++ V+++L + + A D+ +  A     G GGGRP  AQ G  + +K  Q     
Sbjct: 813 KQKVNFVVAVSKELSENYKAGDIVKKVASA-ANGSGGGRPDFAQGGINDTSKLSQLFEEF 871

Query: 893 ASF 895
              
Sbjct: 872 KKI 874


>gi|254436958|ref|ZP_05050452.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 307]
 gi|198252404|gb|EDY76718.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 307]
          Length = 884

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/897 (47%), Positives = 565/897 (62%), Gaps = 40/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++S IR+TFL+++ +NGH+++ SS L+P NDPTLMFTN GMV FKN FTG E   YQ 
Sbjct: 1   MTSLSDIRSTFLDYYARNGHKVVASSPLVPRNDPTLMFTNCGMVQFKNRFTGVESGNYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+F +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWNLLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA+ LWKK  G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLVTVYHTDDEAYDLWKK-IGVPEDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG P    E+G+R+IEIWN+VFMQ EQ +     +L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPDEDGDRFIEIWNIVFMQNEQFDDGTMKLLEMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DL + LI+AS   T    +G+  V+HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 240 HHDNYNTDLMRALIEASANATDGAPDGDGNVHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+ AL  +MG+AYPEL Q + LIE+TL +E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAQDPVMHRLVSALIQQMGAAYPELGQGQTLIEDTLLNEEIRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD  L  + +   L+G  AFKLYDT G PLD+ QD L  +G  G+D   F 
Sbjct: 360 TTLDRGLKLLDDALVDVPEGSDLSGATAFKLYDTFGFPLDLTQDALREKGR-GVDTDGFK 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+++ARA   G G+     IWF + + +G T+F+GY+                  
Sbjct: 419 AAMDAQKAKARAAWTGTGASADAAIWFDIVDAHGVTEFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + AIV   + V  A +G  V ++F+QTPFY E+GGQ GD G    D  
Sbjct: 461 -----TETAQGQLLAIVSDTDPVNSANTGDCVALIFNQTPFYGESGGQEGDQGTVKTDTG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD  KK  G+F+H A V  G + T     L +D+  R  +  NHSATHLL+ AL  
Sbjct: 516 TARVTDT-KKVAGLFLHMAEVTAGAITTGQGSELVVDHAQRSAIRANHSATHLLNEALRV 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS    D LRFD TH+  +T+ EL  +E +VN  + QN  V TRIM  +DA
Sbjct: 575 ALGDHVVQRGSLNAADRLRFDFTHTSCMTAVELAQVEHDVNHYVQQNTTVSTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA A  G KY D VRVVS+         D   +S  LCGGTHV+ TG+I +  + SE
Sbjct: 635 RALGAQAQFGEKYGDEVRVVSMGRANTGKGVDRQTYSLELCGGTHVARTGDIGMFALTSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            +   G+RRIEA+TGQ AR +L  +DE L  +   LK    +V  RV+ + +E R L   
Sbjct: 695 RASSDGVRRIEALTGQTARRYLRTRDETLADVEGMLKSKGTDVATRVKALMDERRALANE 754

Query: 774 HAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            A+ + ++ +      E      I  V F + ++  V  K+L +++D ++  + SG ++L
Sbjct: 755 VAQLRREVAMGGGAKDEGTQDKDINGVAFKAQVMQGVTGKDLPAMIDDMKSAMGSGAVLL 814

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +    + KA+V   VT DL+D+ +AVDL R +   LGG GGGGRP MAQ GG + + 
Sbjct: 815 IA-EGDGKAAVAAGVTADLVDKISAVDLVRAAVAKLGGKGGGGRPDMAQGGGKDASN 870


>gi|171058684|ref|YP_001791033.1| alanyl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|205830133|sp|B1Y1G9|SYA_LEPCP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170776129|gb|ACB34268.1| alanyl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 875

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/913 (40%), Positives = 523/913 (57%), Gaps = 56/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+TFL+FF+  GH+++ SS ++P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKASEIRSTFLKFFESKGHQIVGSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L 
Sbjct: 61  TTSQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTEHFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+++W K+ G+ A++I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYSEDDEAYEIWNKVVGVPAERIVRIGDNKGARYMSDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IFFD       G      E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFFDHGEGIPGGPPGSPDEDGDRYIEIWNNVFMQFNRTEDGVMHKLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGI 290
             VLQ   +NY+IDLF  L+ A++        K       + +VI DH+R+ SF I DG+
Sbjct: 241 TAVLQHVHSNYEIDLFVALLAAAKAAVESAGGKDVDPESPSLKVIADHIRACSFTIVDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI RRA+ +   LG   P    ++  L  +MG AYPEL  A+  + E 
Sbjct: 301 IPGNEGRGYVLRRIARRAIRHGYKLGARTPFFHKIVAELVAQMGEAYPELRAAQARVTEV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+ERF +T+  G+ +L+  L+  G  + ++G+ AFKL+DT+G P+D+  D+   RG+
Sbjct: 361 LKQEEERFFQTIQHGMEILEHALA--GGTKQVDGETAFKLHDTYGFPVDLTADVCRERGV 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F+ A+E QRS+ARA      +         L      T F GY+ L       
Sbjct: 419 T-VDQAGFDAAMEHQRSQARAAGKFKMAAG-------LAYSGAPTAFHGYEHLVCE---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +S V AI   G  V+ A +G    +V D TPFYAE+GGQ GD
Sbjct: 467 ------------------TSKVVAIYVDGTPVDAAQAGDDAAIVLDHTPFYAESGGQAGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R+ + D  K    +F HH  +  G ++   S V  +D + R +   NHSAT
Sbjct: 509 SGELRNGSTRVVVADTFKIQADVFGHHGRIVEGSVKVGDSFVAKVDAELRAKTVRNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG+HV Q GS +  +  RFD  H+ P++ A+++ +E  VN  I  N    
Sbjct: 569 HLMHKALREVLGAHVQQKGSLVNAERTRFDFAHNAPVSDAQIRQVEAIVNAEILANAAAS 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            ++M  +DA  SGA  L G KY + VRV+S+        S  LCGGTHV +TG+I L  +
Sbjct: 629 AQVMALDDAQKSGAMMLFGEKYGETVRVLSIGS------SKELCGGTHVKATGDIGLFKV 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+ES + AGIRRIEAITG  A ++L   +  +  +AS LK +   V  R+  + ++ R L
Sbjct: 683 VAESGVAAGIRRIEAITGDNALAYLQSLESTVNGVASALKSAVPEVPARISGLQDQVRAL 742

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A  K +L              I  +  ++ ++   D+  L++ MD L+ K+++  I
Sbjct: 743 EKELAALKGKLASSQGDSLLAQTVDINGLKVLAVVLEGADAATLRTTMDQLKNKLKTAAI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +    K  +   VT D   +  A +L    A+ +GG G GG+P MA +GG + +K 
Sbjct: 803 VLAAVD-GGKVQLAAGVTADSTAKVKAGELVNFVAQQVGGKG-GGKPDMAMAGGTDPSKL 860

Query: 886 DQAIAGVASFLKK 898
             A+A V  ++ +
Sbjct: 861 AAALASVPGWVGE 873


>gi|319794254|ref|YP_004155894.1| alanyL-tRNA synthetase [Variovorax paradoxus EPS]
 gi|315596717|gb|ADU37783.1| alanyl-tRNA synthetase [Variovorax paradoxus EPS]
          Length = 874

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/909 (41%), Positives = 530/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+FF   GH ++PSSSL+P NDPTLMFTNSGMV FK++F G++K  Y    
Sbjct: 7   TVADIRKTFLDFFASKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGEDKRNYVRAA 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  ++  A++LLTK + L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLTWAFELLTKVYKLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY ED+EA+ +W K  GL  ++++RI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 EKLWATVYIEDDEAYDIWTKEIGLPPERVVRIGDNKGGRYMSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD   E   G      E+G+RYIEIWN VFMQF+ Q       LP   +DTGMGLER+A
Sbjct: 187 FFDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFDMQPDGSVKKLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG K  GNN  + RVI DH+R++SFL++DG++P+N
Sbjct: 247 AILQHVHSNYEIDIFDALIKAAARETGEKDLGNN--SLRVIADHIRATSFLVSDGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG  +P    L+P L   MG AYP+L+  +  I +TL++E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKKPFFHKLVPDLVKLMGDAYPKLVADEKRITDTLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  + L GDVAFKL+DT+G PLD+  D+   RG   +D
Sbjct: 365 EERFFETLANGMEILDAALA--GGAKTLPGDVAFKLHDTYGFPLDLSADVCRERG-VSVD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A+E+Q++  RA       G   K+  +++       F GY+ L           
Sbjct: 422 EAGFNVAMEKQKAAGRA-------GGKFKMDRNVEYTGAGNTFTGYEHLE---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ V A+  +G  V E   GQ   VV D TPFY+E+GGQ+GD G  
Sbjct: 465 -------------ESAKVVALYFEGAAVNELKEGQPGIVVLDTTPFYSESGGQVGDQGVL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +G++  + D QK    +F HH    +G L+   ++   +D   R     NHS THL+H
Sbjct: 512 SAEGVQFGVEDTQKIKADVFGHHGTQTQGTLKVGDAVKAAVDGARRNATMRNHSVTHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  D  RFD  H+ P+T  ++  IE  VN  I  N+    R+M
Sbjct: 572 KALREVLGDHVQQKGSLVDADKTRFDFAHNAPVTRDQILEIEKRVNAEILSNVATQARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  IVSE 
Sbjct: 632 DMESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVGRTGDIGLFKIVSEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG  A ++L   +  ++S+A+ LK     + GR+ ++ E+ R L+   
Sbjct: 686 GVAAGVRRIEAVTGANALTYLQDLESTVQSVAATLKSPAAELQGRLSQVLEQVRALEREV 745

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L              I  +  ++  +   D+K L+  MD L+ K+++ II+L  
Sbjct: 746 GSLKGKLASSKGDELIAQAVDINGIKVLAAKLDGADAKTLRDTMDKLKDKLKTAIIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D + +  A +L    A+ +GG G GG+  MA +GG +      A+
Sbjct: 806 VDGD-KVQIAAGVTADTVGKAKAGELVNFVAQQVGGKG-GGKADMAMAGGTDAAGVPAAL 863

Query: 890 AGVASFLKK 898
             V  ++ +
Sbjct: 864 KSVQGWVSE 872


>gi|319763265|ref|YP_004127202.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|317117826|gb|ADV00315.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans BC]
          Length = 873

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/909 (40%), Positives = 520/909 (57%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 6   SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAA 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +I   W+LLT+ + L  
Sbjct: 66  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESIHWGWELLTQVYKLPP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI         +DNFW MA+TGPCGPCSEI
Sbjct: 126 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+R+IEIWN VFMQF+ +       LP   +DTGMGLER+A
Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNHVFMQFDMKEDGSVTPLPAPCVDTGMGLERLA 245

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + T      N   + +VI DH+R+++FL+ADG++P N
Sbjct: 246 AILQHVHSNYEIDLFDALIKAAARETHTADLAN--PSLKVIADHIRATAFLVADGVIPGN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I E LR E
Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGCKTPFFHKLVKDLVQQMGGAYPKLREQQERITEVLRVE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LDG L+  G    L GDVAFKL+DT+G PLD+  D+   RG  G+D
Sbjct: 364 EERFFETLAHGMEILDGALA--GGARQLPGDVAFKLHDTYGFPLDLTCDVCRERG-VGVD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E Q+S ARA           K+  +L+    A +F GY+ L G         
Sbjct: 421 EAGFAAAMEHQKSTARAAGKF-------KMDRALEYGGAANRFTGYEHLSG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + A+   G  V    +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------TAKIVALYADGTSVAALKAGQSGVVVLDSTPFYAESGGQVGDQGLI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D QK    ++ HH ++  G L    ++   +D   R     NHS THL+H
Sbjct: 511 TAGSARFAVQDTQKIKADVYGHHGVLGEGTLNVGDTVQAQVDGAERAATMRNHSVTHLMH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  I  N     R+M
Sbjct: 571 KALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTAGQIREIECRVNAEILANTATDARVM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +V+E 
Sbjct: 631 DIESAQKTGAVMLFGEKYGETVRVLDIG------TSRELCGGTHVQRTGDIGLFKVVAEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG+ A ++L G +  +   A+ LK     +  R+    ++ + L+   
Sbjct: 685 GVAAGVRRIEAVTGENALAYLQGLEATVDQAAAALKAPAAELATRIAGALDQIKALEKEL 744

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L             ++  +  ++  +   D+K+L+  MD L+ K+++  I+L  
Sbjct: 745 AQLKGKLASAQGDELASQAVEVKGIKVLAAKLDGADAKQLRETMDKLKDKLKTAAIVLAA 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D   R  A +L    A  +GG G GG+P MA +GG +     QA+
Sbjct: 805 VDGD-KVQLAAGVTADSTARVKAGELVNFVAGQVGGKG-GGKPDMAMAGGTDAEALPQAL 862

Query: 890 AGVASFLKK 898
           A VA+++ +
Sbjct: 863 ASVAAWVGE 871


>gi|294505017|ref|YP_003569079.1| alanyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|262363080|gb|ACY59801.1| alanyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262367006|gb|ACY63563.1| alanyl-tRNA synthetase [Yersinia pestis D182038]
 gi|294355476|gb|ADE65817.1| alanyl-tRNA synthetase [Yersinia pestis Z176003]
          Length = 847

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/884 (42%), Positives = 536/884 (60%), Gaps = 56/884 (6%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHH
Sbjct: 1   MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145
           TFFEMLGNFSFG YFK  AI  AW+LLT  + F+L + +L++TVY+ D+EA+ +W    G
Sbjct: 61  TFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNLPKEKLWVTVYETDDEAYNIWANEVG 120

Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERY 197
           +  ++IIRI  N       DNFW M +TGPCGPCSEIFFD G+ I GG PGS+ E+G+RY
Sbjct: 121 VPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCSEIFFDHGDHIWGGPPGSAEEDGDRY 180

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           IEIWN+VFMQF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI A  
Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIAAVA 240

Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
            VTG      +  + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG 
Sbjct: 241 DVTGATD--LSSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E     L+  L   MG A  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L 
Sbjct: 299 KETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLKTEEEQFARTLERGLALLDDELSKLT 358

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
             + L+G+ AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR       
Sbjct: 359 -GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARE------ 410

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           S      + SL     A+QF GYD ++                         + V A+ +
Sbjct: 411 SSGFGADYNSLIRVDSASQFSGYDHVQQH-----------------------ATVTALFR 447

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            GE V+E  +G++  VV ++TPFY E+GGQ+GD G          +TD QK       H 
Sbjct: 448 NGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKGELKNATATFSVTDTQKYG-QAIGHV 506

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I+  G LR   S+   +D   R ++ +NHSATHLLH AL  +LG HV+Q GS +    L
Sbjct: 507 GILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHLLHAALRNVLGEHVAQKGSLVNDKYL 566

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H + +   +++ +ED VN+ I +N+PV T +M  + A   GA AL G KY+D+VR
Sbjct: 567 RFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVR 626

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+++     G  S+ LCGGTH S TG+I L  I++ES   AGIRRIEA+TG+ A + L  
Sbjct: 627 VLTM-----GDFSTELCGGTHASRTGDIGLFRILTESGTAAGIRRIEAVTGEGAIALLHQ 681

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIA 792
           Q + L+ +A  +K    N+  +V  + +  + L+    + K Q           S   I 
Sbjct: 682 QSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLIN 741

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            V  +   +  V+ K L++++D L+ ++ S II+L   + + K S+++ VT+DL  +  A
Sbjct: 742 GVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLATTA-DDKVSLIVGVTKDLTGKVKA 800

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +L    A+ + GG GGGRP MAQ+GG +      A+A V +++
Sbjct: 801 GELIADIAQQV-GGKGGGRPDMAQAGGTDVQALPAALASVEAWV 843


>gi|330825460|ref|YP_004388763.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|329310832|gb|AEB85247.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 873

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/909 (40%), Positives = 521/909 (57%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 6   SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAA 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +I+  W+LLT+ + L  
Sbjct: 66  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESIRWGWELLTQVYKLPP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI         +DNFW MA+TGPCGPCSEI
Sbjct: 126 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+R+IEIWN VFMQF+ +       LP   +DTGMGLER+A
Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNHVFMQFDMKEDGSVTPLPAPCVDTGMGLERLA 245

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + T      N   + +VI DH+R+++FL+ADG++P N
Sbjct: 246 AILQHVHSNYEIDLFDALIKAAARETHTADLAN--PSLKVIADHIRATAFLVADGVIPGN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I E LR E
Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGCKTPFFHKLVKDLVQQMGGAYPKLREQQERITEVLRVE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LDG L+  G    L GDVAFKL+DT+G PLD+  D+   RG  G+D
Sbjct: 364 EERFFETLAHGMEILDGALA--GGARQLPGDVAFKLHDTYGFPLDLTCDVCRERG-VGVD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E Q+S ARA           K+  +L+    A +F GY+ L G         
Sbjct: 421 EAGFAAAMEHQKSTARAAGKF-------KMDRALEYGGAANRFTGYEHLSG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + A+   G  V    +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------TAKIVALYADGTSVAALKAGQSGVVVLDSTPFYAESGGQVGDQGLI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D QK    ++ HH ++  G L    ++   +D   R     NHS THL+H
Sbjct: 511 TAGSARFAVQDTQKIKADVYGHHGVLGEGTLNVGDTVQAQVDGAERAATMRNHSVTHLMH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  I  N     R+M
Sbjct: 571 KALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTAGQIREIERRVNAEILANTATDARVM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +V+E 
Sbjct: 631 DIESAQKTGAVMLFGEKYGETVRVLDIG------TSRELCGGTHVQRTGDIGLFKVVAEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG+ A ++L G +  +   A+ LK     +  R+    ++ + L+   
Sbjct: 685 GVAAGVRRIEAVTGENALAYLQGLEATVDQAAAALKAPAAELATRIAGALDQIKALEKEL 744

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L             ++  +  ++  +   D+K+L+  MD L+ K+++  I+L  
Sbjct: 745 AQLKGKLASAQGDELASQAVEVKGIKVLAAKLDGADAKQLRETMDKLKDKLKTAAIVLAA 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D   R  A +L    A  +GG G GG+P MA +GG +     QA+
Sbjct: 805 VDGD-KVQLAAGVTADSTARVKAGELVNFVAGQVGGKG-GGKPDMAMAGGTDAEALPQAL 862

Query: 890 AGVASFLKK 898
           A VA+++ +
Sbjct: 863 ASVAAWVGE 871


>gi|154248002|ref|YP_001418960.1| alanyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
 gi|205830288|sp|A7IMR0|SYA_XANP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|154162087|gb|ABS69303.1| alanyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
          Length = 884

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/894 (49%), Positives = 593/894 (66%), Gaps = 34/894 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR++F+++F K GHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSSFIDYFVKEGHEAVASSPLVPQNDPTLMFTNAGMVQFKNVFTGVEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+T+ F+L
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLVTRTFEL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + RL +TV+ EDEEA+ LWKKI+GLS DKIIRI T+DNFWSM +TGPCGPCSEIFFD  
Sbjct: 121 PRDRLVVTVFSEDEEAYGLWKKIAGLSDDKIIRIPTSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      ++G+R+IEIWNLVFMQFEQ    ER  LP+ SIDTGMGLER++ VLQ 
Sbjct: 181 PNVPGGPPGSPDQDGDRFIEIWNLVFMQFEQLPGGERLALPRPSIDTGMGLERVSAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DL + LI    ++T +  +G    +HRVI DHLR+S FL ADG+LP+NEGRGY
Sbjct: 241 VHDNYDTDLMRALIAEVAELTSVNPDGPQKASHRVIADHLRASVFLTADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  L+P L  EMG AYPE+++A+ L EETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKDPLMHRLVPVLVREMGRAYPEIVRAESLAEETLLLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +L+   + L       G+VAFKLYDT+G PLD+ QD L ARG   +D  +F+
Sbjct: 361 RTLERGLSILEEESTGLTSGGQFPGEVAFKLYDTYGFPLDLTQDALRARG-ISVDTTAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q++ ARA   G G   T+ +WFS++++ GAT+F+GY+                  
Sbjct: 420 AAMARQKAEARASWAGSGEAATDTLWFSVRDEVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G +V+   +G+K  V+ +QTPFYAE+GGQ+GD G   G+G 
Sbjct: 462 -----TEKAEGVVAALVRDGAVVDSLAAGEKGLVILNQTPFYAESGGQVGDIGRVSGEGG 516

Query: 540 RLQITDVQKKA-EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
                   +K    +FVH   VE G L+   +LVL +D+  R  +  NHSATHLLH AL 
Sbjct: 517 VAAQVVATQKKLGDLFVHEVKVETGTLKRGTALVLEVDHARRAAVRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + PD LRFD +H KP++  EL  +E   N  + +N PV TRIM  +D
Sbjct: 577 RVLGDHVAQKGSLVAPDRLRFDFSHPKPLSGGELAEVETIANRFVLRNEPVETRIMAVDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           AI SGA AL G KY D VRVVS+  +DG    +S  LCGGTHV  TG+I L+ ++SES++
Sbjct: 637 AITSGARALFGEKYGDEVRVVSMGTDDGNGAPYSVELCGGTHVKRTGDIGLISVLSESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA+T   AR HL      L   A+ LK     V  RV  + EE R+L+   A+
Sbjct: 697 ASGVRRIEALTADAARRHLNAASAALAGTAAVLKAPVAEVEARVATLVEERRRLERELAE 756

Query: 777 RKLQLN------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            + +L           +   + D+  ++  +  ++ K+LK ++D  +K+I SG++ +VG+
Sbjct: 757 ARKKLAMGGGGEASGDAVRTVGDIKLLARRVEGIEIKDLKGLVDEGKKQIGSGVVAIVGV 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + + KA +++ VT DL+ RF+AV L R+ ++ LGG GGGGRP MAQ+GGP+G K
Sbjct: 817 TSDGKAGIVVGVTADLIARFDAVALVRVGSEALGGKGGGGRPDMAQAGGPDGAK 870


>gi|51893138|ref|YP_075829.1| alanyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|59798515|sp|Q67MV8|SYA_SYMTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51856827|dbj|BAD40985.1| alanyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 872

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/910 (39%), Positives = 520/910 (57%), Gaps = 59/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  F++FF+  GH  +PSSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIRQKFIDFFKSKGHVHVPSSSLVPHNDPTLLFTNAGMNQFKDTFLGLEKREYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDLD VG T RHHTFFEMLGNFSFG YFKE A+  AW+ +T  +   
Sbjct: 61  VTAQKCVRAGGKHNDLDEVGFTARHHTFFEMLGNFSFGDYFKEDALAYAWEFITSPEWLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + RL++++Y +DE+AF +W    G+ AD+I+R+   DNFW M +TGPCGPCSEIF+D 
Sbjct: 121 LPKDRLWVSIYKDDEQAFDVWHNKVGVPADRIVRLGEKDNFWRMGDTGPCGPCSEIFWDM 180

Query: 180 GECIPGGLPGSS----EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P          +R+ E WN VFMQ+ Q  +     L +  +DTG+GLERMAT
Sbjct: 181 GPEYACDHPDGCRIDTCGCDRWREFWNNVFMQYNQTPEG-LVPLERTGVDTGLGLERMAT 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           ++Q   +N+DIDL++ +     +++G KY  EG   V  RVI DH R  +FLIADG+  +
Sbjct: 240 IMQGVWSNWDIDLWQPIFARIHELSGKKYEGEGPEAVAFRVIADHARCCTFLIADGVRFS 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RRI+RRA+ + R+LG+ EP +  +  A+   MG AYPE+ +   +I++ LR 
Sbjct: 300 NEGRGYVMRRILRRAVRFGRVLGFAEPFIWKVAGAVADVMGDAYPEVRERLPVIQDELRR 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL++G+  L+ +L+ + +  + +++G  AF LYDT+G PLDI++D+   +G  
Sbjct: 360 EEERFLRTLEQGMNRLEEILARMRQKGETVISGQDAFVLYDTYGFPLDIVRDVAREQGFT 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   +  A+ EQR+RARA          +       E    T+F+GY  L G      
Sbjct: 420 -VDEQGYQAAMAEQRARARAARDVSYITEVQSRIAGHLEGVAPTRFVGYTELAG------ 472

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+  Q      A  G  V +V D+TPFYAE GGQ+GDT
Sbjct: 473 -----------------EGRVLAVFDQEGNATGAGEGSSVIIVLDRTPFYAEGGGQVGDT 515

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +  G+R+++ D +K   G  +H+  V+ G L     +   +D + R+    NH+ATH
Sbjct: 516 GQIVAPGLRVEVEDCRKLPSGHHLHYGTVQEGFLEVGQQVEARVDARKRKDTQKNHTATH 575

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV Q GS + PD LRFD TH+ P+T  ++ ++E+ +N  I    PV  
Sbjct: 576 LLHKALREVLGTHVQQAGSLVAPDRLRFDFTHTGPMTPEQIAAVEEMINAEIEAAEPVTW 635

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M  ++A A GA AL G KY + VRVVSV        S  LCGG HVS+T E+    I+
Sbjct: 636 TEMPLDEARALGAMALFGEKYGEIVRVVSVGD----GWSRELCGGCHVSNTSEVQYFKIL 691

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I  G+RRIEA+TG     HL     +                   E++    ++++
Sbjct: 692 SESGIGGGVRRIEAVTGPGVIRHLEEAQARAVEAQ--------------EQLRSRMKEME 737

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + +L             ++  V  ++        ++L+++ DA++ K+ SG+++
Sbjct: 738 KELEQLRAKLAASQTDSLVERAQEVGGVKVVAGTAPVATMEDLRNMTDAIRAKLGSGVVV 797

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K +++  VT+DL  R +A +L R  A++ GGGG GGRP MA +GG N  +  
Sbjct: 798 LGAVTSEGKVNLVAAVTKDLAGRVHAGNLIREVARICGGGG-GGRPDMATAGGKNPERLG 856

Query: 887 QAIAGVASFL 896
           +A+  V   +
Sbjct: 857 EALNAVPGLV 866


>gi|294677289|ref|YP_003577904.1| alanyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
 gi|294476109|gb|ADE85497.1| alanyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
          Length = 884

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/892 (49%), Positives = 571/892 (64%), Gaps = 41/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL FF+KNGH ++ SS L+P NDPTLMFTNSGMV FKN FTG EK  Y  
Sbjct: 1   MPSLNDIRSTFLAFFEKNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGVEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTK+FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEKAITYAWELLTKDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  +WKK+SGL+ ++IIRI T DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKSKLLVTVYHTDDEAAAIWKKVSGLTDERIIRIPTKDNFWQMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 181 DHIWGGPPGSKDEDGDRFIEIWNNVFMQNEQFEDGSMVELEMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSADPDGAGKVHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  +A +LG  +P+M  L+PAL  +MG+AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRILRRAARHAHMLGAKDPVMHKLVPALVRQMGAAYPELVRAQALIEETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL+RGL LLD  L+ L +   L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 VTLERGLKLLDDELAALPEGAELPGPAAFKLYDTYGFPLDLTQDALREKGRT-VDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+EEQ+++ARA   G G  T  K+WF + E+ G T+F+GYD                  
Sbjct: 420 AAMEEQKAKARASWSGSGEATDAKLWFEIAERAGVTEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      ++A+V +G  V EA     V++V +QTPFYAE+GGQ+GD G    D  
Sbjct: 462 -----TETAEGQIQALVIEGAEVTEATG--AVQIVVNQTPFYAESGGQVGDHGIIRTDSA 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++ITD  KK  G+F+H   V  G +       L +D+  R  +  NHSATHLLH AL  
Sbjct: 515 EIRITDT-KKVAGVFIHIGEVVEGKVTRGQPAKLEVDHARRSAIRANHSATHLLHEALRR 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H K +T+ EL ++E  VN  I QN PV TRIM  +DA
Sbjct: 574 ALGDHVAQKGSLNAEDRLRFDFSHGKAMTAEELMTVEAEVNAFIRQNTPVETRIMTPDDA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+          DG  +S  LCGGTHV  TG+I     + 
Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGELLGSGKGHDGRTYSLELCGGTHVKRTGDIGAFVALG 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES+  AG+RR EA+TGQ A   L  Q+ +L  +A  LK S   V  RV+ + EE + L  
Sbjct: 694 ESASSAGVRRFEALTGQAALDWLKAQNARLAEVAGLLKTSPAEVADRVKALAEERKALAN 753

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A+ + +L +           +I  + F++ ++S V  K+L +++D L+ K+ SG +++
Sbjct: 754 EVAQLRRELAMGGGAAGGQEVIEIKGLRFIAQVVSGVSGKDLPALVDGLKDKVGSGAVLV 813

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           V      KA+    VT D     +AV++ +++A  LGG GGGGRP MAQ+GG
Sbjct: 814 VA-DTGGKAACAAGVTADKTGTVSAVEIVKIAAAALGGKGGGGRPDMAQAGG 864


>gi|238761735|ref|ZP_04622710.1| Alanyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238700249|gb|EEP92991.1| Alanyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 847

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/884 (42%), Positives = 535/884 (60%), Gaps = 56/884 (6%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHH
Sbjct: 1   MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145
           TFFEMLGNFSFG YFK  AI  AW+LLT  + F+L + +L++TVY+ D+EA+++W    G
Sbjct: 61  TFFEMLGNFSFGDYFKHDAISFAWELLTSAQWFNLPKEKLWVTVYETDDEAYEIWANDIG 120

Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERY 197
           +  ++IIRI  N       DNFW M +TGPCGPC+EIFFD G+ I GG PGS+ E+G+RY
Sbjct: 121 IPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAEEDGDRY 180

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           IEIWN+VFMQF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI+A  
Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVA 240

Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
           +VTG      +  + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG 
Sbjct: 241 EVTGATD--LSSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E     L+  L T MGSA  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L 
Sbjct: 299 KETFFYKLVAPLITVMGSAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT 358

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
             + L+G+ AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR       
Sbjct: 359 -GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARE------ 410

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           S      + SL     A+QF GYD ++                         + V A+ +
Sbjct: 411 SSGFGADYNSLIRVDSASQFSGYDHVQQ-----------------------QATVTALFR 447

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            GE V+E   G++  VV +QTPFY E+GGQ+GD G          + D QK       H 
Sbjct: 448 NGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDKGELKNATATFAVADTQKYG-QAIGHL 506

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +  G LR   S+   +D   R ++ +NHSATHLLH AL   LG HV+Q GS +    L
Sbjct: 507 GQLTHGTLRVNHSIDAQVDVARRNRIRLNHSATHLLHAALRKTLGDHVAQKGSLVNDKYL 566

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H + +   +++ +ED VN+ I +N+PV T +M  + A   GA AL G KY+D+VR
Sbjct: 567 RFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVR 626

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+++     G  S+ LCGG H + TG+I L  I+SES   AGIRRIEA+TG+ A + L  
Sbjct: 627 VLTM-----GDFSTELCGGIHANRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQ 681

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIA 792
           Q + L  +A  +K    N+  +V  + +  + L+    + K Q           S   I 
Sbjct: 682 QSDLLSDVAHLVKGDTNNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLIN 741

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            V  +   +  V+ K L++++D L+ ++ S II+L   + + K S+++ VT+DL  +  A
Sbjct: 742 GVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLATTA-DDKVSLIVGVTKDLTGKVKA 800

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +L    A+ + GG GGGRP MAQ+GG +      A+A V +++
Sbjct: 801 GELIADIAQQV-GGKGGGRPDMAQAGGTDVQALPSALASVEAWV 843


>gi|225023233|ref|ZP_03712425.1| hypothetical protein EIKCOROL_00085 [Eikenella corrodens ATCC
           23834]
 gi|224944057|gb|EEG25266.1| hypothetical protein EIKCOROL_00085 [Eikenella corrodens ATCC
           23834]
          Length = 873

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/913 (39%), Positives = 522/913 (57%), Gaps = 58/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +V+ DH+RS SFLIADG++
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVVADHIRSCSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+       L+G++ FKLYDT+G P D+  DI   R   
Sbjct: 360 KNEESRFAQTLETGMALLENALTK--GSNKLDGEIIFKLYDTYGFPYDLTADICRERN-I 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN+ +        A      +    K    L      T+F GY+          
Sbjct: 417 NLDEDGFNREM-------EAQRARARAAQNFKANAQLDYTGADTEFTGYE---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ +  E V+E   G+   VV +QTPFYAE+GGQ+GD 
Sbjct: 460 -------------KRSQDTKIIALYKGSEAVDELQVGEAGVVVLEQTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +      V  G L+   ++   ID   R  +  NHS TH
Sbjct: 507 GFIFAGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDNIMRNHSVTH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS    +  RFD++H + I + E+  +E  VN  I  N+PV  
Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGINAEEIAEVERRVNAAIIANVPVKV 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ EDA  SGA  L G KY D VRV+++     G +S+ LCGGTHV+ TG+I    I+
Sbjct: 627 ETMSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL 770
           SE  I AGIRR+EAITG  A +    Q+  +K++ + +K     +V+ +++      + L
Sbjct: 682 SEGGIAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V        +   +     ++  I    +  L+ ++  L  K  + +I
Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG + ++ 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDASQV 858

Query: 886 DQAIAGVASFLKK 898
              +     ++++
Sbjct: 859 GTMLDSAEGWVRE 871


>gi|239816150|ref|YP_002945060.1| alanyl-tRNA synthetase [Variovorax paradoxus S110]
 gi|239802727|gb|ACS19794.1| alanyl-tRNA synthetase [Variovorax paradoxus S110]
          Length = 874

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/909 (40%), Positives = 527/909 (57%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+FF   GH ++ SSSL+P NDPTLMFTNSGMV FK++F G++K  Y    
Sbjct: 7   TVADIRKTFLDFFASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYVRAA 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  ++  A++LLTK + L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLTWAFELLTKVYKLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY ED+EA+ +W K  GL  ++++RI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 EKLWATVYIEDDEAYDIWTKDIGLPPERVVRIGDNKGGRYMSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+RYIEIWN VFMQF+ Q       LP   +DTGMGLER+A
Sbjct: 187 FYDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFDMQPDGSVKKLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG K  GNN  + +VI DH+R++SFL+ADG++P+N
Sbjct: 247 AILQHVHSNYEIDIFDALIKAAARETGEKDLGNN--SLKVIADHIRATSFLVADGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG  +P    L+P L   MG AYP+L+  +  I ETL++E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKKPFFHKLVPDLVKLMGEAYPKLVADEKRITETLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G    L G+VAFKL+DT+G PLD+  D+   RG   +D
Sbjct: 365 EERFFETLANGMEILDAALA--GDARTLPGEVAFKLHDTYGFPLDLSADVCRERG-VSVD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A+E+Q++  RA           K+  +++       F GY+ L           
Sbjct: 422 EAGFNAAMEKQKAAGRAAGKF-------KMDRNVEYGGAGNVFTGYEHLE---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ V A+  +G  V++   GQ   VV D TPFY+E+GGQ+GD G  
Sbjct: 465 -------------ENAKVVALYFEGAAVQQLKEGQPGIVVLDTTPFYSESGGQVGDQGVL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +G++  + D QK    +F HH    +G L+   ++   +D   R     NHS THL+H
Sbjct: 512 VAEGVQFGVDDTQKIKADVFGHHGTQTQGTLKVGDTVKAAVDTARRAATMRNHSVTHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  D  RFD  H+  +T  ++  IE  VN  I  N     R+M
Sbjct: 572 KALREVLGAHVQQKGSLVDADKTRFDFAHNAAVTHDQILEIEKRVNAEILANTETHARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  IVSE 
Sbjct: 632 DMESAQKTGAMMLFGEKYGESVRVLDIGS------SRELCGGTHVGRTGDIGLFKIVSEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG  A  +L   +  ++S+A+ LK     + GR+ ++ E+ R L+   
Sbjct: 686 GVAAGVRRIEAVTGANALGYLQELEATVQSVAATLKSPAAELQGRLVQVLEQVRALEREV 745

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L              +  +  ++  +   D+K L+  MD L+ K+++ +++L  
Sbjct: 746 GSLKGKLASSKGDELLAQAVDVNGIKVLAAKLDGADAKTLRDTMDKLKDKLKTAVVVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +    K  V   VT D + +  A +L    A+ +GG G GG+  MA +GG +      A+
Sbjct: 806 VD-GAKVQVAAGVTSDTVGKVKAGELVNFVAQQVGGKG-GGKADMAMAGGTDAAGLPAAL 863

Query: 890 AGVASFLKK 898
             V +++ +
Sbjct: 864 QSVQAWVAE 872


>gi|258592084|emb|CBE68389.1| alanyl-tRNA synthetase [NC10 bacterium 'Dutch sediment']
          Length = 886

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/914 (41%), Positives = 528/914 (57%), Gaps = 47/914 (5%)

Query: 1   MS---NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M        IR  FL FF++NGH ++ SSSL+P  DPTL+FTN+GMVPFK +F G +   
Sbjct: 1   MMSRLTGGEIRERFLRFFERNGHTVVASSSLVPAGDPTLLFTNAGMVPFKGVFLGTDPRP 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           Y+   ++QKC+R  GKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+  W  LT E
Sbjct: 61  YRRAVSIQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEGAIEYGWAFLTCE 120

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
            +L   RL+ T+Y +D+ A +LW++++GL +D+I+R+   DNFWSM ETGPCGPCSE+ F
Sbjct: 121 LELPADRLWATIYKDDDAAGELWQRLTGLPSDRIVRLGEKDNFWSMGETGPCGPCSELIF 180

Query: 178 DQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           DQG  I  G P        +RY+E+WNLVFMQF +        LPK SIDTG GLERMA 
Sbjct: 181 DQGPTIGCGRPTCTIECGCDRYLELWNLVFMQFNRDASGTLTPLPKPSIDTGAGLERMAA 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V Q  T+N++ DL + LI   E+++  +Y  +  + ++ RVI DH R+ +F +ADG+LP+
Sbjct: 241 VCQGVTSNFESDLIRPLIATVEELSQKRYGADEKDDISMRVIADHARAVTFALADGVLPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ + RLLG  EP +      +   M  AYPEL  ++  +E     
Sbjct: 301 NEGRGYVLRRILRRALRHGRLLGLDEPFLASTTHRVIDLMTDAYPELPASRAHVERLAWI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           E++RFG  L   L  L  ++  +        IL G   F+LYDT+G+P D++ +I   + 
Sbjct: 361 EEDRFGIVLREALPRLHDLIEKIKSQTAEQAILPGSKLFELYDTYGVPRDLIDEIAVEQS 420

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             G D   F   L  QR  +RAH    G        F    K   T F+GY+ L      
Sbjct: 421 -VGCDWNGFEIELRHQRETSRAHLKAFGDVQGVAEAFHDLVKTRRTVFLGYERLD----- 474

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                             + + V A++  G  V+    GQ+ EVV DQTPFYAE+GGQ+G
Sbjct: 475 ------------------LEASVVAVIVGGTQVDRMGVGQEGEVVLDQTPFYAESGGQVG 516

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G   GDG+  ++ D ++   G+ VH   V+RG  R+   L+ +++   R     NH+A
Sbjct: 517 DAGYLRGDGVLAEVLDTKRPLAGLIVHRVRVKRGEFRSGQRLLASVEADRRSTTVKNHTA 576

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL  ILG HV Q GS + PD LRFD  H  P++ AE+  IE+ VN  +  N+PV
Sbjct: 577 THLVHAALRQILGDHVRQEGSLVAPDRLRFDFRHYGPVSPAEITQIEEMVNAKLWANVPV 636

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           V   M  ++A+A GA A  G KY D VRVV V        S  LCGGTH  STGEI LL 
Sbjct: 637 VVEEMRLDEALAKGALAFFGDKYGDEVRVVGVA-----DFSIELCGGTHTKSTGEIGLLK 691

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I  E+ + AGIRRIEA+TG  A  +L  + E L+  A  LK     V  +VE +++  R 
Sbjct: 692 IAHETGVAAGIRRIEALTGPGAFQYLKREGEVLRESADRLKSKPLEVPEKVERLFDSARA 751

Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +    + + +L  E          +++ V  ++ ++ + D + L+ ++D ++ KI+SG+
Sbjct: 752 FEREVQRLRAKLGAEMAEELLNKATRVSGVMVVAGLVEQCDQRALRELVDRVKTKIESGV 811

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L   S + +   +  VT DL  R +A  L +  A  + GG GGGR  +A++GG N ++
Sbjct: 812 IVLA-TSLDGRVGWVAAVTPDLTSRLHAGKLVKEVAN-ITGGSGGGRADLAEAGGKNLDE 869

Query: 885 ADQAIAGVASFLKK 898
            D+A+  V   +K+
Sbjct: 870 LDRALQLVPELVKQ 883


>gi|126735784|ref|ZP_01751529.1| alanyl-tRNA synthetase [Roseobacter sp. CCS2]
 gi|126714971|gb|EBA11837.1| alanyl-tRNA synthetase [Roseobacter sp. CCS2]
          Length = 885

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/892 (48%), Positives = 565/892 (63%), Gaps = 41/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MTSLADIRSTFLNYFGKQGHAIVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+F +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFAWELLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EA  +WKK++GL  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKDRLLVTVYHTDDEAADIWKKVAGLPDDRIIRIPTDDNFWRMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ +      L   SIDTGMGLER+  +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEQFDDGSLKPLEMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 241 KHDNYDTDLMRALIEASADATSSDPDGPGNTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  +P+M  L+PAL  +MG+AYPEL Q + LIEETL +E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHQLGGKDPVMHRLVPALVQQMGAAYPELGQGQRLIEETLLNEEVRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L +L  D  L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 QTLDRGLKLLDEELQNLPDDAALPGTAAFKLYDTYGFPLDLTQDALREKGRE-VDTDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF++ ++ GAT F+GYD L                
Sbjct: 420 AAMAEQKAKARAAWSGTGEAADSAIWFNITDESGATDFLGYDTL---------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V  G+  + A     V++V +QTPFYAEAGGQ+GD G    +  
Sbjct: 464 -------TAEGQIMALVVDGDRADHA--DGAVQIVLNQTPFYAEAGGQVGDAGTLRTETG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + +ITD +K  E I VH A V  G L       L +D   R  +  NHSATHLL+ AL  
Sbjct: 515 KAEITDTKKFGE-IHVHFAKVTEGHLHKGQGAELAVDPVRRANIQANHSATHLLNEALRA 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS   PD LRFD +H+K +  AEL  I+ +VN II QN PV TRIM  +DA
Sbjct: 574 VLGDHIAQRGSLNGPDRLRFDFSHTKALNDAELAQIDRDVNAIIRQNSPVETRIMTPDDA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+           G  +S  LCGGTHV   GEI     + 
Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGRQEGSGKGMGGNTYSLELCGGTHVKQLGEIGAFVTLG 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TGQ A  HL  +++ L + A+ LK     +V R++    + ++   
Sbjct: 694 DSASSAGVRRIEALTGQAALDHLRDREKILFAAAAELKTPIDRLVSRIKGESFKLKEALN 753

Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +A+ + +L       +      I  V F + ++S V  K+L +++D ++  ++SG ++L
Sbjct: 754 ENAQLRRELAMGGGAKDAAPSEVINGVAFQAQVLSGVTGKDLPALIDEMKAAMESGAVLL 813

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +      KA+V + VT DL+DR +AVD+ R +   LGG GGGGR  MAQ GG
Sbjct: 814 IA-DAGGKAAVAVGVTADLIDRVSAVDILRAATPELGGKGGGGRADMAQGGG 864


>gi|108763083|ref|YP_633939.1| alanyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|122387764|sp|Q1D084|SYA_MYXXD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|108466963|gb|ABF92148.1| alanyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 898

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/920 (40%), Positives = 538/920 (58%), Gaps = 57/920 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL+FF++ GH  + SSSL+P NDPTLMFTN+GMV FK++FTG+E   Y+  T
Sbjct: 6   TASEIREAFLKFFEERGHRRVASSSLVPANDPTLMFTNAGMVQFKDVFTGRETRDYRRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI   W+ +T+   L  
Sbjct: 66  TSQKCVRAGGKHNDLDNVGFTARHHTFFEMLGNFSFGDYFKADAIAYGWEFVTRTLGLST 125

Query: 123 RRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL +TV++       DEEA++LWKK  G+ A+++ ++   DNFW+M +TGPCGPCSEI 
Sbjct: 126 DRLAVTVFNGEGGTPWDEEAYELWKKQ-GVPAERLYKLGLKDNFWAMGDTGPCGPCSEIH 184

Query: 177 FDQGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFILPKMSIDTGM 228
           + QG+ IP           G + + +R++EIWNLVFMQFE+ +       LPK SIDTG 
Sbjct: 185 YHQGDDIPCVEEAEGKKCQGVACDCDRWLEIWNLVFMQFERKEKDGPLIPLPKPSIDTGA 244

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A+V+Q K +NY+ DLF++++    ++ G  Y   +  + RV+ DH R+++FLI+D
Sbjct: 245 GLERIASVVQGKRSNYETDLFQNILATVSELCGKPYSQESGASQRVVADHSRAAAFLISD 304

Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G+ P+NEGRGYVLRRIMRRA+ +  + LG  +     ++  +   MG AYPEL +++  +
Sbjct: 305 GVQPSNEGRGYVLRRIMRRAIRHGTQQLGLEDVFFFKVVDRVIELMGDAYPELRESRTFV 364

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
            E  R E+  F +TL RGL L++  LS L K   + L+GDV F L+ T+G P D+ Q I 
Sbjct: 365 LEVCRHEETSFRQTLSRGLKLIEEELSELQKAGGKQLSGDVVFLLHGTYGFPWDLTQIIA 424

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG   +D+         +    +    G G   T +++  L E+ G T+F+       
Sbjct: 425 RERG---LDVDLVRFEERLKEEADKNKFAGSGDKATGEVYLKLAERLGTTEFL------- 474

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               +     ++AIV+ G  V +A  G  VE+V D+TPFY E+G
Sbjct: 475 --------------GYEGEGHEGEGSIRAIVKDGAEVTQATQGDTVELVLDRTPFYGESG 520

Query: 526 GQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+GDTG  +G G +   ++TD Q+   G+ VH   V  G  +    +   +D + R+ +
Sbjct: 521 GQMGDTGRIVGHGGKAVAKVTDAQRPVPGLVVHSVEVSEGTFKVGDMVQAGVDSERRKSI 580

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG HV Q GS + PD LRFD  H  P TSA+L+ +ED VN  I
Sbjct: 581 RANHSATHLLHKALKLVLGEHVKQAGSVVAPDYLRFDFAHFSPATSAQLEQVEDLVNGWI 640

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N    TR+M+ EDA  SGA A+ G KY + VRVV+V        S+ LCGGTHV  +G
Sbjct: 641 RDNAGAETRVMSLEDAKKSGAVAMFGEKYGETVRVVTVHP-----ESTELCGGTHVRRSG 695

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  I SES + +G+RRI A+TG  A  H+  Q+ +L+ +A  LK +   V  RVE  
Sbjct: 696 DIGLFKIASESGVASGVRRIVALTGIGALQHVREQEHELRKVAELLKSNPKEVSKRVEAT 755

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  ++L+    +  ++               +  +  ++  +   D   L+ + D L+ 
Sbjct: 756 QKRVKELERKVEEVAVKAQTASSKDLLEQARDVNGMKVLATQVDAADDNVLRGMADQLRD 815

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I+SG++  +G  K+ +A +L+  T+D++ +  NA  L R  AK +GG G GG+  MAQ+
Sbjct: 816 RIRSGVVA-IGGEKDGRAIILVAATKDVVAKGINAGALVREMAKEVGGKG-GGKAEMAQA 873

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GGP+ +K   A+  +   +K
Sbjct: 874 GGPDASKLPAALEKLYELVK 893


>gi|160871945|ref|ZP_02062077.1| alanyl-tRNA synthetase [Rickettsiella grylli]
 gi|159120744|gb|EDP46082.1| alanyl-tRNA synthetase [Rickettsiella grylli]
          Length = 871

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/902 (39%), Positives = 527/902 (58%), Gaps = 45/902 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N +++R  FL +F+K GH ++PS+SLIP +DP+L+FTN+GMVPFK++F G E+  Y   
Sbjct: 1   MNSNALRQLFLNYFKKQGHTIVPSASLIPAHDPSLLFTNAGMVPFKDVFLGLEQRSYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI L+W  +T+E  L 
Sbjct: 61  ASVQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAILLSWKFMTEELGLS 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ITV+ ED+EA  +W     ++  +  R    DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 PEKLWITVFTEDDEAANIWLNEVKINPKRFSRCGRQDNFWSMGDTGPCGPCSEIFYDYGP 180

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG P  S+  G+RY+EIWNLVFMQ+++    +   LPK S+DTGMGLER+A V+Q  
Sbjct: 181 GISGGAPGTSTASGDRYVEIWNLVFMQYQRSFDGKHIALPKPSVDTGMGLERLAAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           TNN+D DLF  LI+   +   +        + RVI DH+R+ +FLI+DG+ P NEGR YV
Sbjct: 241 TNNFDTDLFLPLIKIVAKEASLTDFTTT--SLRVIADHIRACAFLISDGVYPGNEGRSYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   +G   P    L+  L  +M  AYP L++ +  IE+ L  E+++F +
Sbjct: 299 LRRIIRRAVRHGHKIGLDRPFFYRLVRPLALQMQHAYPALVEKQKFIEKILLEEEQKFAR 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL L +  L  L   +   G VAF+LYDT+G P+D+  D+   RGL  ID+  F  
Sbjct: 359 TLTQGLKLFEQELDKLKDKKQFPGLVAFRLYDTYGFPVDLTADMARERGL-VIDMAGFTT 417

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++ Q+ +++  S    +            +  AT+F+GY     +              
Sbjct: 418 EMDAQKKKSKEASHFSTTPHVHSS------EKKATEFVGYKTREQADIP----------- 460

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      +  ++   ++ EE   G++  VV  +TPFYAE+GGQ+GDTG  +    R
Sbjct: 461 -----------IIDLLDDKDLKEELAEGEEGFVVLTKTPFYAESGGQVGDTGYLVNATSR 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +    KK   + +H   + +G L+    +   +D + R   ++NHSATHLLH  L  I
Sbjct: 510 FFVITTLKKGS-LILHRGQLIKGHLKKGDKVKAEVDPKKRHATTLNHSATHLLHAVLREI 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+ V Q GS + P+ LRFD ++S P+T  +LK IE+ VN  I  NLPVVT++M+ EDA 
Sbjct: 569 LGTQVMQKGSLVEPERLRFDFSYSSPLTCEQLKLIENRVNWQIRANLPVVTQVMSMEDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY + VRV+++     G  S  LCGGTHVS TG+I L  I  ESS+  G+
Sbjct: 629 KAGALALFGEKYGNNVRVLTI-----GTFSKELCGGTHVSQTGDIGLFKITEESSVSTGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL- 779
           RRI+A+TGQ A   +   ++++  LA     S+  V  +V    +  + LQ   A  +  
Sbjct: 684 RRIQALTGQYALDWVAALEDQMNQLAKLFHTSKDTVFEKVCLEVKTKQSLQKKIAALQQS 743

Query: 780 --QLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              +  E+L      I  +N +   ++ +DS  L+ ++D L+ K++  +I+L  I + K 
Sbjct: 744 IVAMMGEELVSQALTIKGINLLISEMNGIDSAGLRFLVDQLKNKLKPAVIVLTSIEQ-KN 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +++ VT++L+ +  A +LA   A +  GG GGGR   AQ+GG      +  +  V  +
Sbjct: 803 VQLVVGVTKELVGKIKANELAHSLA-LTMGGRGGGRADFAQAGGGKPEALEATLKSVKHW 861

Query: 896 LK 897
           ++
Sbjct: 862 VE 863


>gi|119946985|ref|YP_944665.1| alanyl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|205830184|sp|A1T001|SYA_PSYIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119865589|gb|ABM05066.1| alanyl-tRNA synthetase [Psychromonas ingrahamii 37]
          Length = 867

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/887 (41%), Positives = 525/887 (59%), Gaps = 46/887 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  F +FF   GH+ + + SL+P +DPTL+FTN+GM  FK+ + G EK  Y   
Sbjct: 3   KSTNEIRQGFRDFFVNKGHQSVSTGSLVPHDDPTLLFTNAGMNQFKDTYLGTEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E  L 
Sbjct: 63  TSSQCCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWEYLTVELGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L++TV+DED EA K+W +  G+    ++RI   DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 123 KDKLWVTVFDEDLEAEKIWIEEIGVDPKCVLRIGAKDNFWSMGDTGPCGPCSEIFYDHGE 182

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PG++ E+G+R+IEIWN+VFMQ+ +        LPK S+DTGMGLER++ ++Q  
Sbjct: 183 DVWGGPPGTAEEDGDRFIEIWNIVFMQYNRHADGTMENLPKPSVDTGMGLERISAIMQNC 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI+   +VTG         + RV+ DH+RS  FLI DG++P+NEGRGYV
Sbjct: 243 HSNYEIDLFQGLIKKVAEVTGASD--LEDKSLRVVADHIRSCGFLICDGVMPSNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +     +   L  +MG AYPEL + +L +E+ LR E+E+F K
Sbjct: 301 LRRIIRRAVRHGHKLGAKDIFFFKIYDELINQMGDAYPELSKQRLFVEKILRREEEQFAK 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLDRGL +LD  L HL   +++ GDV FKLYDT G P D+  DI   RGL  ID   F++
Sbjct: 361 TLDRGLQILDNELDHLE-GQVIPGDVVFKLYDTFGFPADLTADIARERGLT-IDEAGFDK 418

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+ EQR RA+  +           +         T+FIGY+ L+G+              
Sbjct: 419 AMAEQRKRAQQANNFGI------DYNKTLIIDQKTEFIGYETLQGA-------------- 458

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V  +V +G  V     G   +V+   TPFYAEAGGQ GD G  I +   
Sbjct: 459 ---------ATVTHLVVEGAFVNALKEGDSGQVILSATPFYAEAGGQSGDAGKLILNNGV 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +TD +K  +  FVH   V  G ++    +   +D   R+ ++++HSATHLLH AL   
Sbjct: 510 FVVTDTKKSGD-AFVHSGYVGMGSVKVNDKVHAEVDTARRQSIALHHSATHLLHAALRKT 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  D LRFD +H + +++  L  +   VN+ I  N  VVT++M+ E+A 
Sbjct: 569 LGEHVTQKGSLVDADKLRFDFSHFEALSADSLSEVTFLVNEAIRNNYEVVTKLMDIEEAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           +S A AL G KY++ VRVV +     G  S+ LCGGTH   TG++ L  I SES I AG+
Sbjct: 629 SSNAMALFGEKYDEMVRVVQM-----GDFSTELCGGTHAKRTGDLGLFLIRSESGIAAGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA  G  A   +     ++      ++    N+  ++E++ +  + L+   A+ K +
Sbjct: 684 RRIEATVGSAADQVISELLYEVDKACGLVRGDHVNLGEKIEQLVDRSKLLEKEVAELKAK 743

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +          +  +I  V  +   I  +D K L+  +D ++ K+QSGI++L  ++ + K
Sbjct: 744 IASAAGANLIDNAIEINGVKVVIANIEGIDPKLLRDSVDQMKNKMQSGIVVLATVAADDK 803

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            S++  V++DL+ +  A +L  L A  +GG G GGRP MA +GG N 
Sbjct: 804 VSLIAGVSKDLIKKVKAGELVNLVAGPVGGKG-GGRPDMAMAGGNNP 849


>gi|225848695|ref|YP_002728858.1| alanyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644297|gb|ACN99347.1| alanyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 875

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/904 (40%), Positives = 538/904 (59%), Gaps = 41/904 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FL++F+  GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+  Y+  
Sbjct: 4   MAADEIRESFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QK  R  GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+  WD LT    + 
Sbjct: 64  ASCQKVFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFTWDYLTNYLKIP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           Q +L ++V++ED+EAF++W K+ GL  +KI R+   DNFWSM +TGPCGP SEI++D+GE
Sbjct: 124 QEKLLVSVFEEDDEAFEIWNKVIGLPEEKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGE 183

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G     S+E  RY+EIWNLVFMQ+ +        LP  SIDTGMGLER+A+V+Q+  
Sbjct: 184 KF-GNPEFGSDEDFRYLEIWNLVFMQYNRDESGNLTPLPNPSIDTGMGLERIASVIQQVD 242

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           +NYD DLFK +I+ +E++ G  Y     + V  RVI DHLR+ +FLI+DG+LP+NEGRGY
Sbjct: 243 SNYDTDLFKPIIRFAEEIAGKTYGKNEKDDVAMRVIADHLRAITFLISDGVLPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ Y R LG   P +   +  +  +M +AYPEL+  +  I++  +SE+E+F 
Sbjct: 303 VLRRILRRALRYGRNLGIDRPFLYEGVDVVIDKMKNAYPELVPNRNYIKKITKSEEEKFI 362

Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTL R + +L  ++  +     + L G+  FKLYDT+G P+D++QDIL    +   +I  
Sbjct: 363 KTLRRSMDILYQMIETAKKEGRKFLTGEEVFKLYDTYGFPIDLLQDILRDESMT-FNIKE 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + + EQ+ R+R       +   + I+  LK +    +FIGY+ L              
Sbjct: 422 FEELILEQKERSRKAFKT-TAKQVKPIYLQLKSRLPENEFIGYNTLISE----------- 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      SS V AIV++ + V +A  G++VE++ D TPFY E GGQ+GD G   G+
Sbjct: 470 -----------SSKVLAIVKEDQTVSQAKEGEEVEIILDITPFYPEKGGQVGDRGVIEGE 518

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D Q   EG+ +H   +  G ++    +   +D + R  +  +H+ATHLLH AL
Sbjct: 519 NFLAEVIDTQTPTEGLILHKVKILFGTVKEGEFVRAKVDKERRENIMRHHTATHLLHSAL 578

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV Q GS ++ + LRFD TH + ++  E+K IE+ VN  I +N  VV + M+ E
Sbjct: 579 RNILGDHVKQAGSLVSDEYLRFDFTHFESLSDEEIKMIEEFVNREIMKNEEVVCQEMSYE 638

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+ SGA A+   KY D VRV+S         S  LCGGTHV  TG+I    I+SE ++ 
Sbjct: 639 EALNSGAIAIFEEKYGDVVRVISAG------VSKELCGGTHVKRTGDIGYFKILSEYAVS 692

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G RRIEA+ G RA    + +   LK L+  L V +  ++ RV ++  + ++ +      
Sbjct: 693 SGTRRIEAVAGIRAVEQGLKEHFLLKDLSRLLTVKEDELIDRVVKLQNQLKEKERELENL 752

Query: 778 KLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           K +  ++     L+  +  D       I  V   EL+ + D +++K+   +++LV   KE
Sbjct: 753 KKKAALDKLNQTLNIIEKEDYKVAYGEIENVSPNELREIADNIKQKLGKAVVLLVSKDKE 812

Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K K +++ +V++DL DR+ A ++ +  A ++  G GGG+P  AQ GG N  K  Q +   
Sbjct: 813 KSKVNIVALVSKDLTDRYKASEILKKLAPIVE-GSGGGKPDFAQGGGTNLEKVPQLLQEF 871

Query: 893 ASFL 896
            +F+
Sbjct: 872 KNFI 875


>gi|319786629|ref|YP_004146104.1| alanyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465141|gb|ADV26873.1| alanyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 882

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/909 (43%), Positives = 543/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR+ FLEFF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   TTARIRSDFLEFFKDKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT  + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIAWAWELLTGVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ +W+   G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDDEAYGIWRDQIGVPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGEHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF+ LI+ +  +TG         + RVI DH+R+SSFLI DG+LP+N
Sbjct: 248 AILQHVHSNYEIDLFQALIRKAAALTGTPD--LENKSLRVIADHIRASSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    L+  L  +MG AYPEL  A+  ++  L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFHQLVDELVAQMGEAYPELPAARDTVQRALKAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V +H     ++ G  AF+LYDT+G PLD+ QDI   RGL  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAAHAA-GAVIPGVDAFRLYDTYGFPLDLTQDIARERGLT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E+QR  ARA       G   ++   L      T F+GYD L           
Sbjct: 424 VAGFEAAMEQQRETARAAGKF---GGGVQLPAELVATLEPTVFLGYDALEAEGM------ 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G  V+   SG++  V+ D+TPFYAE+GGQ+GDTG  
Sbjct: 475 ----------------KVVALLHDGRPVDSVASGEEAIVLLDRTPFYAESGGQVGDTGVL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G +LQ+ D QK A     H   V  G L+T   L   +D + RR + +NHSATHLLH
Sbjct: 519 EGEGAKLQVGDTQKFAGQFHGHFVRVAEGGLKTGQLLRGAVDGERRRAIVLNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +P+ + E+  IE  VND +  N  VV + M
Sbjct: 579 GALRGLLGTHVQQKGSLVAPDRLRFDFSHFQPVNAEEVARIERMVNDEVRANHAVVIQQM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRVV +        S  LCGGTHV+ TG+I L  IVSE 
Sbjct: 639 GIQEALDLGAMALFGEKYGERVRVVKMGE------SVELCGGTHVARTGDIGLFKIVSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  H+  +   L   AS L  S+G VV R   + E  RKL+   
Sbjct: 693 GVSAGVRRIEALTGQAALEHIAAEGRALDEAASLLGGSRGEVVERARAVAERIRKLEREL 752

Query: 775 AKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +      +        ++ +  ++  +  +D+K L+  +D L++++   +++L G
Sbjct: 753 ESIKAKAASSAAADLAGSAVDVSGIKVLAARLEGIDAKGLREAVDRLKQQLGDTVVLLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             +  K +++  V      +  A +L    A  +GG G GGRP +AQ GG +G     A+
Sbjct: 813 A-QGGKVALVAGVNGAATGKVKAGELLAHVAGRIGGKG-GGRPDLAQGGGEDGPALAPAL 870

Query: 890 AGVASFLKK 898
           A V +++ +
Sbjct: 871 ADVPAWVAE 879


>gi|134298636|ref|YP_001112132.1| alanyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|205830077|sp|A4J2K4|SYA_DESRM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|134051336|gb|ABO49307.1| alanyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
          Length = 878

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/910 (40%), Positives = 547/910 (60%), Gaps = 49/910 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +L FF++ GH++LPS+SLIP NDP++++T +GMVPFK  FTGQ  P YQ 
Sbjct: 1   MLTGKEIREKYLRFFEQRGHQILPSASLIPHNDPSILWTAAGMVPFKPFFTGQAVPEYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R      D+++VGRT RHHTFFEMLGNFSFG YFKE  I  AW+ +TKE +L
Sbjct: 61  VTTCQKCIRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKESIIPWAWEFITKELNL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L+IT+Y +D+EAF++W K+ G+ +++I+R+  + NFW +   GPCGPCSEI+ D G
Sbjct: 117 PKEKLWITIYQDDDEAFEIWNKVVGIPSERIVRLGKDTNFWEIG-VGPCGPCSEIYVDLG 175

Query: 181 ECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G        + +R++EIWNLVF+QF +  +     L    IDTGMGLER+A+VLQ
Sbjct: 176 EARGCGSPECQVGCDCDRFLEIWNLVFIQFFRDEEGNYSPLENKGIDTGMGLERVASVLQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D D+F+ ++  +  + G +Y    +  +  +VI DH R+ +F ++DG LP NEG
Sbjct: 236 GVASNFDTDIFREIMDFTANLAGQEYGQKADIDLALKVIADHCRAVTFAVSDGALPGNEG 295

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYV+RR++RRA+ + R+LG  EP +  +  A+  +M  AYPEL Q    +   +R+E+E
Sbjct: 296 RGYVIRRLLRRAVRFGRVLGVREPFLYKVAQAVIKQMQDAYPELKQKAEHVLRVIRTEEE 355

Query: 357 RFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL  G  +L  ++  +       + GD AFKLYDT G PL++ Q+I   +GL  +D
Sbjct: 356 RFLETLAAGSDILSALINEAKASGASEITGDDAFKLYDTFGFPLELTQEIAEEQGL-AVD 414

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           +  FN A+EEQR RAR+        +   + + +L+E+ G T+FIGY  L          
Sbjct: 415 VEVFNAAMEEQRKRARSARQETEYLSERGVLYKALREELGETRFIGYSALEAD------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S + A+++ G     AV+G++VE+V D TP YAE+GGQ+ D   
Sbjct: 468 ----------------SNIMALLKDGMQEISAVAGEEVEIVLDVTPCYAESGGQVADHAI 511

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G  + ++IT V K  EG+ +H   V  GI++   S+   +D   R+  + NHSATHLL
Sbjct: 512 LRGPDLEVEITSVNKPVEGLVIHRGKVLSGIIKRHDSVKAIVDQPRRQDTARNHSATHLL 571

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS + PD LRFD TH   +TS EL+ IE+ VN+ +  NL +    
Sbjct: 572 HKALKEVLGDHVNQAGSLVEPDRLRFDFTHYAAVTSEELRRIEEIVNEAVLSNLSIEVFE 631

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            +   A   GAAAL G KY  +VRVV +     G  S  LCGGTH++ST E+ L  I +E
Sbjct: 632 TSLSKAKEMGAAALFGEKYGKQVRVVKM-----GDFSMELCGGTHLTSTAEVGLFKIFNE 686

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +S+ AG+RRIEA+TG     +L  ++E+L+ +AS +K     +V R E + ++ + L+  
Sbjct: 687 TSVGAGLRRIEAVTGTGVLKYLKAKEEQLEEIASVIKSPMHELVRRSEALVQQNKSLEQE 746

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               + +L   ++     +  +  +V  ++ +++  D   L+ ++D L+ K+ SG+I+L 
Sbjct: 747 IEALRNKLAKSEVQDILGNIKRAKEVPVLASVVAAPDMDNLRGMVDMLRDKMGSGVILLG 806

Query: 829 GISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + E K +++  VT+DL     +A +L +  AK++GGGG GGRP MAQ+GG N  K  +
Sbjct: 807 STAGE-KVNLVAAVTKDLHGQGLHAGNLVKEIAKMVGGGG-GGRPDMAQAGGKNPEKLQE 864

Query: 888 AIAGVASFLK 897
           AI  V   ++
Sbjct: 865 AIDQVCRVVE 874


>gi|121605522|ref|YP_982851.1| alanyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|205830175|sp|A1VQK2|SYA_POLNA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120594491|gb|ABM37930.1| alanyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 874

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/907 (40%), Positives = 523/907 (57%), Gaps = 56/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+FF   GH ++PSSSL+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   TVADIRKTFLDFFAAKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGVDKRPYVRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175
            RL  TVY+ED+EA+ +W K  GL  +++IRI         +DNFW MA+TGPCGPCSEI
Sbjct: 127 ERLLATVYEEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ IPGG P    E+G+R+IEIWN VFMQF          LP   +DTGMGLER+A
Sbjct: 187 FYDHGDHIPGGPPGSPDEDGDRFIEIWNNVFMQFNMAEDGSVTPLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG    G+   + RVI DH+R+++FL++DG+ P+N
Sbjct: 247 AILQHVHSNYEIDIFDALIKAASRETGEADLGHK--SLRVIADHIRATAFLVSDGVNPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +  LLG   P    L+  L   MG AYP L      I E L++E
Sbjct: 305 EGRGYVQRRIIRRAIRHGYLLGKKTPFFHKLVADLAGLMGDAYPRLAADAQRITEVLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL+ G+ +LD  L+     ++L G+VAFKL+DT+G PLD+  D+   RGL+ +D
Sbjct: 365 EERFFETLETGMQILDAALAD--GVKVLPGEVAFKLHDTYGFPLDLSADVCRERGLS-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ +Q+++ARA           K+  +L        F GY+ L           
Sbjct: 422 EAGFTVAMNQQKAQARAAGKF-------KMDRALDYSGTGNVFTGYEHLE---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         +S + AI   G       +GQ   +V D TPFYAE+GGQ GD G  
Sbjct: 465 -------------ETSKIIAIYADGVSAAALKAGQNGVIVLDTTPFYAESGGQAGDEGEL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I    R  ++D  K    ++ HH  +  G L     +   ++ + R     NHSATHL+H
Sbjct: 512 ISGSARFAVSDTLKIKADVYGHHGTLAEGTLNVGDHVSARVNKEVRAATVRNHSATHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  +  RFD  H+ P+T A+++ +E  VN  I  N       M
Sbjct: 572 KALREVLGAHVQQKGSLVNAERTRFDFAHNAPMTDAQIREVEARVNAEILANSATDASEM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY D VRV+S+        S  LCGGTHV  TG+I L  IV+ES
Sbjct: 632 DMEAAQKTGAMMLFGEKYGDSVRVLSIGS------SKELCGGTHVGRTGDIGLFKIVAES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RR+EA+TGQ A ++L   +  ++S A  LK S   +  R+ ++ ++ + L+   
Sbjct: 686 GVASGVRRVEAVTGQNALAYLQSLESTVQSAAGTLKASPSELQNRIGQVLDQVKALEKEV 745

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L         L    +  +  ++  +   D+K L+  MD L+ K+++ +I+L  
Sbjct: 746 AALKGKLASSQGDELMLQAVDVKGLKVLAARLEGADAKTLRETMDKLKDKLKTAVIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +    K  +   VT D   +  A +L    A  +GG G GG+  MA +GG + +  + A+
Sbjct: 806 VD-GSKVQIAAGVTSDSTGKVKAGELVNFVAGQVGGKG-GGKADMAMAGGTDASNLNAAL 863

Query: 890 AGVASFL 896
             V  ++
Sbjct: 864 DSVLGWV 870


>gi|15836729|ref|NP_297417.1| alanyl-tRNA synthetase [Xylella fastidiosa 9a5c]
 gi|9104908|gb|AAF82937.1|AE003866_2 alanyl-tRNA synthetase [Xylella fastidiosa 9a5c]
          Length = 916

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/910 (40%), Positives = 543/910 (59%), Gaps = 50/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK     V 
Sbjct: 40  TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 99

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT  ++L  
Sbjct: 100 DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 159

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+E++ LW+ + G+  D+I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 160 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 219

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE IPGG P    E+G+R+IEIWNLVFMQF++Q+      LP   +DTGMGLER+A
Sbjct: 220 FYDHGEHIPGGPPGSPDEDGDRFIEIWNLVFMQFDRQSDGTLVPLPAPCVDTGMGLERLA 279

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  + ++T +    N   + RVI DH R+ +FLI DG+LP+N
Sbjct: 280 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNK--SLRVIADHSRACAFLIVDGVLPSN 337

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P   +++P L   MG AYP+L  A   +  TL +E
Sbjct: 338 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 397

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI   RG++ +D
Sbjct: 398 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMS-VD 455

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           ++ F  A+ +QR  ARA       G   ++          T F+GY+ L+          
Sbjct: 456 MVGFEAAMTQQRKTARAAGKF---GRGVQLSAERAAMLSPTVFLGYEQLQADGL------ 506

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G + + A  G +V V+ D+TPFYAE+GGQ+GD G  
Sbjct: 507 ----------------RVVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 550

Query: 535 IGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           +            +K  G F  H   + +G ++    L  ++    R+ +++NHSATHLL
Sbjct: 551 MASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 610

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL ++ G+HV Q GS + PD LRFD +H +PI +A++  IE  VND +  N  V+   
Sbjct: 611 HCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPIAAAQMTLIERMVNDEVRANHLVMIEQ 670

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A+ +GA AL G KY + VRVV++        S  LCGGTH++ TG+I L  I+SE
Sbjct: 671 MGMQAALDAGAMALFGEKYGEHVRVVTMG------TSVELCGGTHINRTGDIGLFKIISE 724

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  +VV  + ++ +  + L+  
Sbjct: 725 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 784

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L    +     +   +ADV  ++  +  +D K L+  +D L+ ++   +I+L 
Sbjct: 785 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 844

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG +G     A
Sbjct: 845 GVTGGKVALVTAVNGRRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGEDGPSLRSA 903

Query: 889 IAGVASFLKK 898
           + GVA+++K+
Sbjct: 904 LDGVATWVKQ 913


>gi|253574903|ref|ZP_04852243.1| alanyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845949|gb|EES73957.1| alanyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 874

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/910 (40%), Positives = 521/910 (57%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF   GH++ PS+SL+P NDP+L++ N+GM P K  F G+ KP    +
Sbjct: 1   MKASEIRSKWLEFFASKGHKIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRIKPENPRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K   
Sbjct: 61  ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEAITWAWEFLTDKKWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  RL +TVY EDEEAFKLW +  G+ AD+II++   DNFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPDRLSVTVYPEDEEAFKLWNEKIGIPADRIIKL--EDNFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           GE              E ER++E+WNLVF QF          LP  +IDTG GLER A++
Sbjct: 174 GEAYGDLSDPECYPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 233

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPAN 294
           LQ+  +N+D DLF+ +IQ +  + G+ Y          +VI DH+R+ +F +ADG+LP+N
Sbjct: 234 LQDVNSNFDTDLFQPIIQKTASLAGVTYGAAEDSDVALKVIADHIRTVTFAVADGVLPSN 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV+RR++RRA+ Y +L+G  +P M  L+  +   MG+ YP+++  +  IE+ +R+E
Sbjct: 294 EGRGYVIRRLLRRAVRYGKLIGLDKPFMFSLVETVGDIMGTYYPDVVIKREFIEKVIRTE 353

Query: 355 DERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  GL +L  +   +       ++GD AFKLYDT+G PLD+ +D     GL+ 
Sbjct: 354 EERFHETLSDGLAILADISAEAKAQGRTQISGDDAFKLYDTYGFPLDLTEDFAAEHGLS- 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RARA     GS   +     L +    T+F+GY+ L         
Sbjct: 413 VDREGFEAAMEEQRERARAARHESGSMMVQGGV--LADFTTKTEFVGYNELE-------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          V++ + AIV     V+    GQ  +V+   TPFYAE+GGQ+ D G
Sbjct: 463 ---------------VTTSIVAIVVDDAFVDTLGEGQSGQVILASTPFYAESGGQVSDQG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     +  + K   G  VH   V+ G LR    +  ++D + R     NH+ATHL
Sbjct: 508 TIHNDSASATVEGLFKAPHGQHVHQVTVKTGELRVGAEVTASVDREQRSHTVKNHTATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS + P  LRFD +H   I+  EL  IE  VN+ I   LPV T 
Sbjct: 568 LHKALKETLGEHVNQAGSLVEPQRLRFDFSHLGSISPEELAEIERRVNEQIWNALPVTTS 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +   ++A A GA AL G KY D VRVV V     G +S  LCGG HV+++ EI L  IVS
Sbjct: 628 LKPIDEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVNNSAEIGLFKIVS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I +G+RRIEA+TG+ A   + GQ + LK  A  LK +  +V  RVE ++++ ++L  
Sbjct: 683 ESGIGSGVRRIEAVTGRGAYLFMDGQLDLLKQAAGLLKANVNDVPKRVEGLFQQLKELSR 742

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   + +L+V +          +     ++  +       L+++ D L+ K+   +++L
Sbjct: 743 ENESLQSKLSVIEAGELTSQVVSVGQTKLLAARVQAGSMDALRTLADELKVKLPDAVLVL 802

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G   E K + ++VV ++ + R  +A  L +  A V GGGG GGRP MAQ+GG + +K D
Sbjct: 803 -GAPNEDKVNFVVVVPKEEVARGLHAGKLVKEIAAVCGGGG-GGRPDMAQAGGKDASKLD 860

Query: 887 QAIAGVASFL 896
           +A+   A ++
Sbjct: 861 EALKVAAEWI 870


>gi|22096207|sp|Q9PH22|SYA_XYLFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 884

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/910 (40%), Positives = 543/910 (59%), Gaps = 50/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK     V 
Sbjct: 8   TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT  ++L  
Sbjct: 68  DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+E++ LW+ + G+  D+I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE IPGG P    E+G+R+IEIWNLVFMQF++Q+      LP   +DTGMGLER+A
Sbjct: 188 FYDHGEHIPGGPPGSPDEDGDRFIEIWNLVFMQFDRQSDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  + ++T +    N   + RVI DH R+ +FLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNK--SLRVIADHSRACAFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P   +++P L   MG AYP+L  A   +  TL +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI   RG++ +D
Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMS-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           ++ F  A+ +QR  ARA       G   ++          T F+GY+ L+          
Sbjct: 424 MVGFEAAMTQQRKTARAAGKF---GRGVQLSAERAAMLSPTVFLGYEQLQADGL------ 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G + + A  G +V V+ D+TPFYAE+GGQ+GD G  
Sbjct: 475 ----------------RVVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           +            +K  G F  H   + +G ++    L  ++    R+ +++NHSATHLL
Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL ++ G+HV Q GS + PD LRFD +H +PI +A++  IE  VND +  N  V+   
Sbjct: 579 HCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPIAAAQMTLIERMVNDEVRANHLVMIEQ 638

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A+ +GA AL G KY + VRVV++        S  LCGGTH++ TG+I L  I+SE
Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVTMG------TSVELCGGTHINRTGDIGLFKIISE 692

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  +VV  + ++ +  + L+  
Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 752

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L    +     +   +ADV  ++  +  +D K L+  +D L+ ++   +I+L 
Sbjct: 753 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG +G     A
Sbjct: 813 GVTGGKVALVTAVNGRRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGEDGPSLRSA 871

Query: 889 IAGVASFLKK 898
           + GVA+++K+
Sbjct: 872 LDGVATWVKQ 881


>gi|270264045|ref|ZP_06192313.1| alanyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270042238|gb|EFA15334.1| alanyl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 839

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/875 (42%), Positives = 535/875 (61%), Gaps = 56/875 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           +FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 2   LFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 61

Query: 97  SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AI  AW+LLT    F+L + RL++TVY+ D+EAF +W+K  G+ A++IIRI
Sbjct: 62  SFGDYFKHDAISYAWELLTGENWFNLPKERLWVTVYETDDEAFDIWQKQIGVPAERIIRI 121

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFM
Sbjct: 122 GDNKGAAFASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFM 181

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF  LI A  +VTG     
Sbjct: 182 QFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFSKLITAVAKVTGA--VD 239

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
            +  + RVI DH+RS +FL++DG++P++EGRGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 240 LDNKSLRVIADHIRSCAFLVSDGVMPSSEGRGYVLRRIIRRAIRHGNMLGAKESFFYKLV 299

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MG A  EL + + L+E+ L++E+++F +TL+RGL LLD  L++L   + L+G+ 
Sbjct: 300 APLIEVMGPAADELKRQQSLVEKVLKTEEDQFARTLERGLALLDEELANLQ-GDTLDGEA 358

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   RGL  +D   F QA+E QR RAR       S      + 
Sbjct: 359 AFRLYDTYGFPVDLTADVCRERGLK-VDEAGFEQAMEAQRRRARE------SSGFGADYN 411

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
           S+    GA+QF GYD                            + V A+ + G+ V+E  
Sbjct: 412 SMIRVDGASQFSGYDHEEQ-----------------------QATVTALFRDGQPVDEIH 448

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G++  VV D+TPFY E+GGQ+GD G     G    ++D QK       H   +  G+L+
Sbjct: 449 VGEEAVVVLDETPFYGESGGQVGDKGVLKTAGADFVVSDTQKYG-QAIGHQGKLSHGVLK 507

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            +  +   ID   R ++ +NHSATHLLH AL   LG HV+Q GS +    LRFD +H + 
Sbjct: 508 VKDRVDAQIDIARRNRIRLNHSATHLLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEA 567

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   +++ +ED VN  + +NLPV T +M  +DA   GA AL G KY+D VRV+++     
Sbjct: 568 MKPEQIRVVEDLVNQQVRRNLPVQTEVMALDDAKEKGAMALFGEKYDDSVRVLTM----- 622

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGGTH S TG+I L  I++ES   AGIRRIEA+TG+ A + L  Q++ L+ +A
Sbjct: 623 GDFSTELCGGTHASRTGDIGLFRILTESGTAAGIRRIEAVTGEGAIATLHQQNDLLQDVA 682

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII 801
             +K    N+  +V  + +  R L+    + K Q   ++ +       K+  V  +   +
Sbjct: 683 QLVKGDNSNLTDKVRAVLDRTRALEKELQQLKDQQAAQESASLSSQAKKVNGVQLLVSQL 742

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
             V++K L++++D L+ ++ S II+L   + + K S++  VT+DL DR  A +L    A+
Sbjct: 743 DNVEAKMLRTMVDDLKNQLGSAIIVLATTA-DDKVSLIAGVTKDLTDRVKAGELIGHVAQ 801

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + GG GGGRP MAQ+GG + +    A+  V +++
Sbjct: 802 QV-GGKGGGRPDMAQAGGTDVSALPAALNSVEAWV 835


>gi|167627901|ref|YP_001678401.1| alanyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|205830099|sp|B0TZY8|SYA_FRAP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167597902|gb|ABZ87900.1| Alanine--tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 865

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/900 (42%), Positives = 528/900 (58%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MISTKELRNKFISYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGLEKRDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W    GL  ++IIRI +NDNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYATDDEAFDVWHNHIGLPKERIIRIDSNDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLP    E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLER+A VLQ+
Sbjct: 181 EDVAGGLPGTPDEDGDRYIEIWNIVFMQFNRHADGTVTDLPKPSVDTGMGLERIAAVLQD 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI+ +++VT       N  + +V+ DH+RS +FLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDIDLFQALIKKAQEVTNADDI--NSPSLKVVADHIRSCAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +     L+  L  +MG AYP+LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKLGAKDIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  +  L   +I++G++AF+LYDT+G PLD+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDTEIVSLK-SDIISGEIAFRLYDTYGFPLDLTADMAREKGLK-VDEEAFK 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + + +Q+ R++        G     + S+      + F GY  L                
Sbjct: 417 EQMLKQKQRSKEA------GKFNVDYNSIINSQAKSDFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G+ V    +G    +V D+TPFYAE+GGQ+GD G   G G+
Sbjct: 455 -------IEDAKVLEIYQDGQPVNAIQAGSTAVIVLDRTPFYAESGGQVGDKGVLEGVGV 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +GIL T   +   ++   R   + NHSATHLLH  L  
Sbjct: 508 EFIVEDVQKSGE-AILHIGKLSKGILNTYDEVTARVNDSVRLATAANHSATHLLHKVLKI 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSH  Q GS +  + LRFD TH K I+  E++ IE  VN  I  N PV T   ++E A
Sbjct: 567 ILGSHAEQKGSLVDDNKLRFDFTHDKAISRVEIEQIETLVNQQIRANYPVATIETSQEKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  IVSES I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIVSESGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEAIT  +A  +    + KL ++    K +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 IRRIEAITANKAIKYTFATENKLAAIKEITKSNDSNLLDKLQSMLEQLKNQEKEIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            +      D+    I  +  +   +  VD K L+  +D  + K    + +L       K 
Sbjct: 742 DILSGANSDIKESSIDGIKLIIANLEGVDIKTLREKIDDYKSKNDKMVAVL-STINADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V++ +     A D+A+  +  +  G GGGRP MAQ GG N    D+A++ + + +
Sbjct: 801 QFVIGVSKSITSLIKAGDIAKEFSGYI-DGKGGGRPDMAQGGGNNSTNIDKALSDLENHI 859


>gi|238758257|ref|ZP_04619436.1| Alanyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238703587|gb|EEP96125.1| Alanyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 847

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/884 (42%), Positives = 534/884 (60%), Gaps = 56/884 (6%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHH
Sbjct: 1   MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145
           TFFEMLGNFSFG YFK  AI  AW+LLT  + F+L + +L++TVY+ D+EA+++W    G
Sbjct: 61  TFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNLPKEKLWVTVYETDDEAYEIWANEVG 120

Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERY 197
           +  ++IIRI  N       DNFW M +TGPCGPC+EIFFD G+ I GG PGS+ E+G+RY
Sbjct: 121 VPCERIIRIGDNKGGAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAQEDGDRY 180

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           IEIWN+VFMQF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI+A  
Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVA 240

Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
           +VTG      +  + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG 
Sbjct: 241 EVTGAAD--LSSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E     L+  L   MG A  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L 
Sbjct: 299 KETFFYKLVAPLIAVMGPAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT 358

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
             + L+G+ AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR       
Sbjct: 359 -GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARE------ 410

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           S      + SL     A+QF GYD +                          + V A+ +
Sbjct: 411 SSGFGADYNSLIRVDSASQFSGYDHV-----------------------HQQATVTALFR 447

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            GE V+E  +G++  VV +QTPFY E+GGQ+GD G          + D QK       H 
Sbjct: 448 NGEAVDEIHAGEEAVVVLNQTPFYGESGGQVGDKGELKNATAVFTVVDTQKYG-QAIGHL 506

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             + +G LR   S+   +D   R ++ +NHSATHLLH AL   LG HV+Q GS +    L
Sbjct: 507 GQLTQGTLRVNHSVDAQVDVARRNRIRLNHSATHLLHAALRKTLGEHVAQKGSLVNDKYL 566

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H + +   +++ +ED VN+ I +NLPV T +M  + A   GA AL G KY+D+VR
Sbjct: 567 RFDFSHFEAMKPEQIRQVEDLVNEQIRRNLPVETEVMELDTAKEKGAMALFGEKYDDQVR 626

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+++     G  S+ LCGG H S TG+I L  I+SES   AGIRRIEA+TG+ A + L  
Sbjct: 627 VLTM-----GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIAQLHQ 681

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIA 792
           Q + L+ +A  +K    N+  +V  + +  + L+    + K Q           S   + 
Sbjct: 682 QSDLLQDVAHLVKGDTHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLVK 741

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
               +   +  V+ K L++++D L+ ++ S II+L   + + K S+++ VT+DL  +  A
Sbjct: 742 GAKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLA-TAADDKVSLIVGVTKDLTGKVKA 800

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +L    A+ + GG GGGRP MAQ+GG +      A+A V +++
Sbjct: 801 GELIADIAQQV-GGKGGGRPDMAQAGGTDVQALPSALASVEAWV 843


>gi|323702194|ref|ZP_08113861.1| alanyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323532881|gb|EGB22753.1| alanyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 877

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/909 (39%), Positives = 549/909 (60%), Gaps = 49/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL FF++ GH++LPS+SLIP NDP++++T +GMVPFK  FTGQ  P Y+ V
Sbjct: 1   MTGKEIREAFLRFFEERGHQILPSASLIPHNDPSILWTAAGMVPFKPFFTGQAVPEYKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+++VGRT RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L 
Sbjct: 61  TTCQKCIRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKEKAIPWAWEFVTEHLKLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+IT+Y +D+EAF +W  + G+ A++I+R+  + NFW +   GPCGPCSEI+ D GE
Sbjct: 117 ADKLWITIYLDDDEAFDIWHNVVGVPAERIVRMGKDTNFWEIG-VGPCGPCSEIYVDLGE 175

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++EIWNLVF+QF +  +     L    IDTGMGLER+A+VLQ+
Sbjct: 176 TRGCGSPNCGVGCDCDRFLEIWNLVFIQFFRDEEGNYSPLKNKGIDTGMGLERVASVLQQ 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +N+D DLF+ ++  +  + G KY       +  +VI DH R+ +F + DG LP NEGR
Sbjct: 236 VNSNFDTDLFREIMDFTANMVGQKYGQDARVDLALKVIADHCRAVTFAVNDGALPGNEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + R+LG  EP +  +  A+  +M  AYP+L Q    I   +R+E+ER
Sbjct: 296 GYVIRRLLRRAVRFGRVLGVHEPFLYKVAGAVINQMAIAYPDLKQRTDHILRVIRTEEER 355

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL  G  +L  ++S         ++G  AF+LYDT G PL++ ++I   +GL+ +D 
Sbjct: 356 FLETLAAGSDILASLISEARAAGKTEISGQDAFRLYDTFGFPLELTREIASEQGLS-VDE 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F  A+EEQR RAR+        +   + + +L+E+ G T+F+GY  L           
Sbjct: 415 DGFTAAMEEQRRRARSARQETEYLSERGVMYKALREELGETRFVGYGTL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V A+++ G     AV+G++VE++ D TP YAE+GGQ+ D    
Sbjct: 464 ------------TADANVLALLKDGLQEISAVAGEEVEIILDVTPCYAESGGQVADYATL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + ++I  V K  EG+FVH   V  G+L+   S+ + +D + R+  + NHSATHLLH
Sbjct: 512 TGPDLEVEIYSVNKPVEGLFVHRGKVVSGVLKRHDSVKVEVDARRRQDTARNHSATHLLH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS + PD LRFD TH   +T  ELK +E+ VN  +  NL V     
Sbjct: 572 KALKQVLGDHVNQAGSLVEPDRLRFDFTHYAALTPEELKQVEELVNQAVLANLSVDVFET 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A A GAAAL G KY  +VRVV +     G  S  LCGGTH++ T E+ L  I++E+
Sbjct: 632 SLSKAKAMGAAALFGEKYGKQVRVVKM-----GDFSLELCGGTHLTCTAEVGLFKIINET 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG     +L  ++E+L+ +A+ +K  +  +V RVE + ++ + L+   
Sbjct: 687 SVGAGLRRIEAVTGPGVLRYLAAKEEQLQEIAAVIKSPEHELVRRVEALVQQNKSLEQEI 746

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              + +L   ++        ++  V  ++ +++  D   L+S++D L+ K+ SG+I+L  
Sbjct: 747 EALRGKLARAEVQDILGQVQEVKGVPVLAAVVAAPDMDNLRSMVDMLRDKLGSGVILLGS 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + E K +++  VT+DL+ R  +A +L +  AK++GGGG GGRP MAQ+GG + +K  +A
Sbjct: 807 KAGE-KVNLVAAVTKDLVGRGLHAGNLVKQIAKMVGGGG-GGRPDMAQAGGKDPSKLKEA 864

Query: 889 IAGVASFLK 897
           I  V + ++
Sbjct: 865 IDQVIAVVE 873


>gi|254283834|ref|ZP_04958802.1| alanyl-tRNA synthetase [gamma proteobacterium NOR51-B]
 gi|219680037|gb|EED36386.1| alanyl-tRNA synthetase [gamma proteobacterium NOR51-B]
          Length = 865

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/902 (41%), Positives = 523/902 (57%), Gaps = 46/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+   H  + SSSL+P +DPTL+FTN+GM  FK  F G E   Y   
Sbjct: 1   MKTAEIREAFLSYFESQQHTRVASSSLVPHDDPTLLFTNAGMNQFKETFLGLEVRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW  LT+   L 
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQFAWTFLTEVLGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITV+  D+EA  +W    G+  +++ R+   DNFW M +TGPCGP SEIF+D G 
Sbjct: 121 KARLWITVHISDDEAAAIWIDEIGIDPNRLSRL-DEDNFWQMGDTGPCGPSSEIFYDHGA 179

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS ++  +RYIEIWNLVFMQF +        LP  S+DTGMGLER+A VLQ  
Sbjct: 180 DVPGGPPGSEDDDLDRYIEIWNLVFMQFNRDADGTLHPLPAPSVDTGMGLERIAAVLQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI A+    G+        + RVI DHLRS  FL+ADG+LP NEGRGYV
Sbjct: 240 HSNYEIDLFQALIAATAARLGVTD--LEHKSLRVIADHLRSCCFLVADGVLPGNEGRGYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG   P    L+P L  +MG AYPEL  ++  I   L +E+++F +
Sbjct: 298 LRRIIRRAIRHGSKLGADGPFFSALVPELVAQMGDAYPELRDSESRIASALANEEDQFAR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD GL +LDG L+ L    ++ G++ F+LYDT+G P+D+  DI   RG   +D+  +  
Sbjct: 358 TLDNGLSILDGELAALS-GTVIPGELVFRLYDTYGFPVDLTNDIARERGFT-LDLDGYEA 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A++EQR R++        G+ +  + +     G T+F GYD                   
Sbjct: 416 AMDEQRKRSQEG------GSFKVDYSNTVALEGETEFTGYD------------------- 450

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               +    + V A+++ G+ V     G    VV ++TPFY E+GGQ+GDTG    + ++
Sbjct: 451 ----SGVSEATVMALLKDGDAVSTLEEGDDGIVVLNRTPFYGESGGQVGDTGFLSANDVK 506

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D  K      +HH  +  G L T+ S+   ID   R+Q+ +NHSATHLLH AL  +
Sbjct: 507 AEVRDTTKAQGH-HLHHVKILSGTLATDASVRAEIDVSVRQQIRLNHSATHLLHAALRQV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +    LRFD ++ KP++  EL +I D VN+ I  N PV T  M+ + A+
Sbjct: 566 LGEHVTQKGSLVDSQRLRFDFSNEKPVSKTELSTISDIVNEQIRGNTPVTTENMSMDAAM 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY D VRV+++  +     S  LCGGTHV  TG+I +L IV+ES + AG+
Sbjct: 626 DAGAMALFGEKYGDSVRVLTMGNDR---FSVELCGGTHVERTGDIGVLKIVAESGVAAGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG RA +     + +L ++   LK     VV +V  +  E R L+   A+ K +
Sbjct: 683 RRIEAVTGARALAAFAAGESQLDAVCEALKTRADTVVDKVTALRSEARDLEKEVARLKQK 742

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L              +  +  ++  I   D   L+  +D  + K+   +++L  +  E K
Sbjct: 743 LASASGGDLTADAVDVGGIKVLAATIDGADVATLRETLDQCKNKLGDAVVLLAAVEGE-K 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  V++ L  +  A DL R  A  LGG G GGRP MAQ GG +       +A + ++
Sbjct: 802 ISLVAGVSKALTKQVKAGDLMREFAGRLGGKG-GGRPDMAQGGGSDVAALPAVLADLPNW 860

Query: 896 LK 897
           ++
Sbjct: 861 VQ 862


>gi|241668454|ref|ZP_04756032.1| alanyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876987|ref|ZP_05249697.1| alanyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843008|gb|EET21422.1| alanyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 865

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/900 (41%), Positives = 527/900 (58%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MISTKELRNKFISYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGLEKRDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W    GL  ++IIRI +NDNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYATDDEAFDVWHNHIGLPKERIIRIDSNDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLP    E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLER+A VLQ+
Sbjct: 181 EDVAGGLPGTPDEDGDRYIEIWNIVFMQFNRHADGTVTDLPKPSVDTGMGLERIAAVLQD 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI+ +++VT       N  + +V+ DH+RS +FLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDIDLFQALIKKAQEVTNADDI--NSPSLKVVADHIRSCAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +     L+  L  +MG AYP+LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKLGAKDIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +T++ G+ + D  ++ L   + ++G++AF+LYDT+G PLD+  D+   +GL  +D  +F 
Sbjct: 359 RTIENGIKIFDTEIASLK-CDTISGEIAFRLYDTYGFPLDLTADMAREKGLK-VDEEAFK 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + + +Q+ R++        G     + S+      + F GY  L                
Sbjct: 417 EQMLKQKQRSKEA------GKFNVDYNSIINSQAKSNFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G+ V    +     +V D+TPFYAE+GGQ+GD G   G G+
Sbjct: 455 -------IEDAKVLEIYQDGQPVNTIQAESTAVIVLDRTPFYAESGGQVGDKGVLEGVGV 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +GIL T   +   ++   R   + NHSATHLLH AL  
Sbjct: 508 EFIVEDVQKSGE-AILHIGKLSKGILNTYDEVTARVNDSVRLATAANHSATHLLHKALKI 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSH  Q GS +  + LRFD TH K I+  E++ IE  VN  I  N PV T   ++E A
Sbjct: 567 VLGSHAEQKGSLVDDNKLRFDFTHDKAISRVEIEQIETLVNQQIRANYPVATIETSQEKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  IVSES I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIVSESGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEAIT  +A  +    + KL ++    K +  N++ +++ + E  +  +   AK K 
Sbjct: 682 IRRIEAITADKAIKYTFAIENKLAAIKEITKSNDSNLLDKLQSMLEHLKNQEKEIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            +      ++    I  +  +   +  VD K L+  +D  + K    + +L       K 
Sbjct: 742 DILSGANSNIKESSIDGIKLIIANLEGVDIKTLREKIDDYKSKNDKMVAVL-STINADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V++ +     A D+A+  +  +  G GGGRP MAQ GG N    D+A++ +  ++
Sbjct: 801 QFVIGVSKSITSLIKAGDIAKEFSGYI-DGKGGGRPDMAQGGGNNSTNIDKALSDLEKYI 859


>gi|256003587|ref|ZP_05428576.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|255992378|gb|EEU02471.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|316939793|gb|ADU73827.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 880

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/906 (38%), Positives = 550/906 (60%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH  LPS SLIP NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK  AI  AW+  T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y++D+EAF++W K  GL  ++I+R+  ++NFW    TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R+IE+WNLVF QF ++       L   +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  + ++    ++TG++Y  +    V+ RVI DH+RS++ +I+DG++P+NEGRGY
Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG   P +  +   +  E   AYPEL +    I++ +R E+E+F 
Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIEESKGAYPELAERAENIKKVIRIEEEKFE 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GLV+L   +    K  +++++GDV F+L+ T+G P+D+ ++I    GL G+D   
Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++E ++ AR               +S  +K   T+F+GY                 
Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKLDKSVKTEFLGYTESE------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V  I+++ ++V+EA  G  V V+ D+TPFYAE+GGQ+GD G    +
Sbjct: 467 ----------ATARVLYIIKEDQVVDEAQKGDSVTVILDRTPFYAESGGQVGDKGLIEAE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G R+++ D +K  +G ++H   +E G LR  M +  TID + R  ++ NH+ THLLH AL
Sbjct: 517 GARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHV+Q GS + PD LRFD TH   +T  E+KS+ED VN+ I +++ V  R M+ +
Sbjct: 577 RNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY D VRVV +     G +S  LCGGTH++ T +   + IVSES + 
Sbjct: 637 EARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG+ A  H   +++ L+ +A  LK +  + V R+E +  E +  Q    + 
Sbjct: 692 SGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L    L        +I  V  ++    + D + L++  D ++ K+ SG+++L G   
Sbjct: 752 RSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTGF 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++++ T+D++ +  +A ++ + +AKV GGGG GGRP MAQ+GG + +K D+A+  
Sbjct: 811 GGKVSLVVMATKDVVAKGIHAGNIIKEAAKVAGGGG-GGRPDMAQAGGKDVSKIDEALKQ 869

Query: 892 VASFLK 897
               ++
Sbjct: 870 AVKVIE 875


>gi|114566020|ref|YP_753174.1| alanyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318869|sp|Q0AZQ1|SYA_SYNWW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114336955|gb|ABI67803.1| alanyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 880

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/910 (40%), Positives = 536/910 (58%), Gaps = 45/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR TFLE+F++ GH ++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MWSSAEIRKTFLEYFEERGHSVVESSSLVPVNDPTLLFTNAGMNQFKDVFLGLDKRKYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L
Sbjct: 61  ATSSQKCVRAGGKHNDLDTVGRTPRHHTFFEMLGNFSFGDYFKREAIGYAWEFLTEVVGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++T+Y +D+EA  LW +ISG+   +I+R+   DNFWSM +TGPCGPCSEI +D+G
Sbjct: 121 PEEKLWVTIYQDDDEAADLWPEISGIDPGRIVRLGEKDNFWSMGDTGPCGPCSEILYDRG 180

Query: 181 ECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                G P       + +R++EIWNLVFMQF +    E   LP+ SIDTGMGLER++++L
Sbjct: 181 IEYSCGAPDCGIGVCDCDRWLEIWNLVFMQFNRDESGEMTPLPRPSIDTGMGLERLSSIL 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEG 296
           Q   +N+D DLF  +I+  E++TG  YE        RVI DH R+ SFLIADG+LP+N+G
Sbjct: 241 QGVDSNFDTDLFIPIIKRIEELTGKAYEQGERGFPFRVIADHSRACSFLIADGVLPSNDG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ + R LG     +   +  +C  M  AYPEL++ +  I+E +R E+E
Sbjct: 301 RGYVLRRILRRALRFGRFLGIEGSFLYKNVDVVCDIMQEAYPELLEKQDFIKEVIRLEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TL+ GL   + ++    +  D ++ G+ AF LYDT+G PLD+ +D+        +D
Sbjct: 361 RFLLTLNDGLKKAEEIMERARQRGDNVIPGEEAFMLYDTYGFPLDLTEDMAEE-NQFTLD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++++EEQR RAR  + G      E++          + F GY+             
Sbjct: 420 KAGFDRSMEEQRQRARQANKGEDLLGQERLLSEKLAGIAPSSFTGYEN------------ 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      +   S++ AI++  E++++A++G++V ++  +TPFYAE+GGQ+ D G  
Sbjct: 468 -----------SRDESVLLAIIKGSELMDKALNGEEVILITARTPFYAESGGQVADCGII 516

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G    L++ DV+K +  I   H  +  G+L T   + L +D   R   + NH+ATHLLH
Sbjct: 517 KGQEGLLRVQDVKKLSAWI--LHYGIVEGVLTTGEGVSLQLDDPARMDTARNHTATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG H  Q GS + P  LRFD +H K ++S EL  IE  VN+ I +  PV T + 
Sbjct: 575 RALREVLGEHAQQKGSLVEPARLRFDFSHLKALSSEELSRIEQMVNEAIWKLYPVTTTVT 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
               A   GA AL G KY + VRVV V+      +SS LCGGTHV +TG+I L  I  E 
Sbjct: 635 ALGQAREMGAMALFGEKYGEEVRVVQVDT-----YSSELCGGTHVQNTGQIGLFKITGEG 689

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           SI +G+RRIEAITG  A  ++   +++LK  AS L+ S   +  R+E +    ++     
Sbjct: 690 SIGSGLRRIEAITGSYALEYIKQLEDELKKAASALRSSPLELAKRIENLNNSLKEKDKEI 749

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                +L+            ++ D   +   +   D   L+   + L+ K+   I+ML  
Sbjct: 750 ENLLQRLSRSSSDELVNKAFQLNDAWILIEEVDIEDPGSLRQNAEMLKDKLGRAIVMLAS 809

Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I  E K S +  V++DLL+   +A  +   +A+V GGGG GGRP MAQ+GG + +K  +A
Sbjct: 810 IKGE-KVSFVCFVSKDLLEQGLHAGKIVAAAAQVAGGGG-GGRPDMAQAGGRDKSKISEA 867

Query: 889 IAGVASFLKK 898
           +A     +KK
Sbjct: 868 LAEARKMVKK 877


>gi|281416686|ref|ZP_06247706.1| alanyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|281408088|gb|EFB38346.1| alanyl-tRNA synthetase [Clostridium thermocellum JW20]
          Length = 880

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/906 (38%), Positives = 551/906 (60%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH  LPS SLIP NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK  AI  AW+  T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y++D+EAF++W K  GL  ++I+R+  ++NFW    TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R+IE+WNLVF QF ++       L   +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  + ++    ++TG++Y  +    V+ RVI DH+RS++ +I+DG++P+NEGRGY
Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG   P +  +   +  E   AYPEL +    I++ +R E+E+F 
Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIEESKGAYPELAERAENIKKVIRIEEEKFE 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GLV+L   +    K  +++++GDV F+L+ T+G P+D+ ++I    GL G+D   
Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++E ++ AR               +S  +K   T+F+GY                 
Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKLDKSVKTEFLGYTESE------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V  I+++ ++V+EA  G+ V V+ D+TPFYAE+GGQ+GD G    +
Sbjct: 467 ----------ATARVLYIIKEDQVVDEAQKGESVTVILDRTPFYAESGGQVGDKGLIEAE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G R+++ D +K  +G ++H   +E G LR  M +  TID + R  ++ NH+ THLLH AL
Sbjct: 517 GARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHV+Q GS + PD LRFD TH   +T  E+KS+ED VN+ I +++ V  R M+ +
Sbjct: 577 RNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY D VRVV +     G +S  LCGGTH++ T +   + IVSES + 
Sbjct: 637 EARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG+ A  H   +++ L+ +A  LK +  + V R+E +  E +  Q    + 
Sbjct: 692 SGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L    L        +I  V  ++    + D + L++  D ++ K+ SG+++L G   
Sbjct: 752 RSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTGF 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++++ T+D++ +  +A ++ + +AKV GGGG GGRP MAQ+GG + +K D+A+  
Sbjct: 811 GGKVSLVVMATKDVVAKGIHAGNIIKEAAKVAGGGG-GGRPDMAQAGGKDVSKIDEALKQ 869

Query: 892 VASFLK 897
               ++
Sbjct: 870 AVKVIE 875


>gi|125975678|ref|YP_001039588.1| alanyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|205830037|sp|A3DKB6|SYA_CLOTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|125715903|gb|ABN54395.1| alanyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
          Length = 880

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/906 (38%), Positives = 550/906 (60%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH  LPS SLIP NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK  AI  AW+  T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y++D+EAF++W K  GL  ++I+R+  ++NFW    TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R+IE+WNLVF QF ++       L   +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  + ++    ++TG++Y  +    V+ RVI DH+RS++ +I+DG++P+NEGRGY
Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG   P +  +   +  E   AYPEL +    I++ +R E+E+F 
Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIKESKGAYPELAERAENIKKVIRIEEEKFE 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GLV+L   +    K  +++++GDV F+L+ T+G P+D+ ++I    GL G+D   
Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++E ++ AR               +S  +K   T+F+GY                 
Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKLDKSVKTEFLGYTESE------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V  I+++ ++V+EA  G  V V+ D+TPFYAE+GGQ+GD G    +
Sbjct: 467 ----------ATARVLYIIKEDQVVDEAQKGDSVTVILDRTPFYAESGGQVGDKGLIEAE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G R+++ D +K  +G ++H   +E G LR  M +  TID + R  ++ NH+ THLLH AL
Sbjct: 517 GARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHV+Q GS + PD LRFD TH   +T  E+KS+ED VN+ I +++ V  R M+ +
Sbjct: 577 RNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY D VRVV +     G +S  LCGGTH++ T +   + IVSES + 
Sbjct: 637 EARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG+ A  H   +++ L+ +A  LK +  + V R+E +  E +  Q    + 
Sbjct: 692 SGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L    L        +I  V  ++    + D + L++  D ++ K+ SG+++L G   
Sbjct: 752 RSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTGF 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++++ T+D++ +  +A ++ + +AKV GGGG GGRP MAQ+GG + +K D+A+  
Sbjct: 811 GGKVSLVVMATKDVVAKGIHAGNIIKEAAKVAGGGG-GGRPDMAQAGGKDVSKIDEALKQ 869

Query: 892 VASFLK 897
               ++
Sbjct: 870 AVKVIE 875


>gi|71066015|ref|YP_264742.1| alanyl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|83305857|sp|Q4FRQ0|SYA_PSYA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71039000|gb|AAZ19308.1| alanyl-tRNA synthetase [Psychrobacter arcticus 273-4]
          Length = 890

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/913 (40%), Positives = 523/913 (57%), Gaps = 54/913 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  F++FF    H  + SSSLIP NDPTL+FTN+GM  FK  F G E   Y    T
Sbjct: 7   SADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVT 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+  I   W+ LT  +   +D
Sbjct: 67  SQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAID 126

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RLY+T+Y+ D+EAF +W K  G+ +++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 127 KNRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGDNKGAPYASDNFWTMGDTGPCGPCTE 186

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +F+D G  I GGLP    E+G+RYIEIWN VFMQF +Q       LP  S+DTGMGLER+
Sbjct: 187 VFYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGTMLPLPAPSVDTGMGLERI 246

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q    NY+IDLF HL+ A+ ++  ++       + +VI DH+R+ SFLIADG+ P+
Sbjct: 247 SAIMQGVHGNYEIDLFVHLMDAAAEILEIE--NQQQSSLKVIADHIRAVSFLIADGVTPS 304

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +   LG        ++  L  EMG AYPEL   + +IE T++ 
Sbjct: 305 NEGRGYVLRRVIRRAVRHGNKLGADSDFFYKMVAPLVAEMGIAYPELKDKQSVIENTIQK 364

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ +F KTL +GL LL   L  L   + L+G+ AFKLYDT+G P+D+  DI   RG   I
Sbjct: 365 EEAQFAKTLAQGLRLLASELEGLQDGDTLSGEAAFKLYDTYGFPVDLTADITRERG-IVI 423

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F++ ++ QR RAR       +G  +  + S+ +    T FIGY+ L          
Sbjct: 424 DEAEFDEHMQAQRERAR------DAGKFDVDYSSVIQVENPTTFIGYEQLEQEGVA---- 473

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             + A+ Q G   +    G +  VV D+TPFYAE GGQ+G+ G 
Sbjct: 474 ------------------IDALYQDGNPADSLTEGMEGVVVLDRTPFYAEGGGQVGELGE 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    + D +K  + I  +  +V  G ++T+ +    +    R   + NHSATHLL
Sbjct: 516 IRTATGVFDVQDTKKSGQAIIHY-GVVTMGEIKTKQTADAQVLSSIRAASAKNHSATHLL 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG  V+Q GS ++ + LRFD ++ KP++ AE+  IE  VN+ I  N P     
Sbjct: 575 HAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSPAEIMRIERLVNEQIQANTPTRIEN 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCGGTHVSSTGEIMLL 708
           M  ++AI  GA AL G KY + VRV+++             S  LCGG HV  TG+I +L
Sbjct: 635 MPIDEAIKQGAMALFGEKYGNDVRVLTMGTDSIVDGQRMPFSIELCGGLHVQRTGDIGVL 694

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AGIRRIEA+T   A  ++   +++L  LAS LKV +  V  RV  + ++ R
Sbjct: 695 KITSESGIAAGIRRIEAVTAMNAIKNIQQSEQQLSELASQLKVKRPEVAQRVRTMADKQR 754

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L+    + + ++              IA +  +   +S VD K ++++MD ++ K+   
Sbjct: 755 DLEKQLERLEQKIASAQAANLLDEVQTIAGIPLLISTLSGVDGKSIRTLMDDIKSKLPDS 814

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L+G  K+++ ++   V + + DR  A D+ R  A  LGG G GG+P  AQ G P  N
Sbjct: 815 VIVLIG-DKDEQLALAANVAKSVTDRIKAGDIIRYLAGELGGKG-GGKPDYAQGGAPKSN 872

Query: 884 KADQAIAGVASFL 896
            +   IA + +++
Sbjct: 873 NSAAVIAALPAWV 885


>gi|118602853|ref|YP_904068.1| alanyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|205830196|sp|A1AXE0|SYA_RUTMC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118567792|gb|ABL02597.1| alanyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 865

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/902 (40%), Positives = 533/902 (59%), Gaps = 44/902 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F+  GH +  S+SLIP ND TL+F N+GMV FK++F+G EK  Y   
Sbjct: 1   MKTAQIRQKFLDYFESKGHTIESSASLIPHNDKTLLFVNAGMVLFKDVFSGVEKRPYMRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LTKE +L 
Sbjct: 61  VSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIYYAWEFLTKELNLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+++V++ED+EA  +W    G   ++I R  T DNFW M +TGPCGP SEIF+D GE
Sbjct: 121 KEKLWVSVFEEDDEAENIWINEIGFPKNRISRCGTKDNFWQMGDTGPCGPSSEIFYDYGE 180

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG P  + E+G+RYIEIWNLVF QF++Q       L    +DTGMGLER+A VLQ K
Sbjct: 181 HIAGGPPGHADEDGDRYIEIWNLVFTQFDKQEDGHLKPLAVPCVDTGMGLERLAAVLQHK 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV-NHRVIVDHLRSSSFLIADGILPANEGRGY 299
            NNYD D F+ L++A   +T       N   + RVI DH+RS++F+I DG+ P+NEGRGY
Sbjct: 241 NNNYDTDGFQSLVKAIVNLTPKSNNIKNNNASVRVIADHIRSTAFMIVDGVNPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RR + +   +G  +     L P L  E   AYPEL QA   +E+ L+ E++RF 
Sbjct: 301 VLRRIIRRGIRHGHKMGIDKVFFYRLAPVLALEFKDAYPELKQALPKVEKVLKREEQRFS 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+G+ LL+  +++L   EI +G   FKLYDT+G P+D+  DI   R L  ID++ F 
Sbjct: 361 QTLDQGMRLLEDAITNLNGSEI-DGKTVFKLYDTYGFPIDLTADIARERHLT-IDMLGFE 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +  QR RAR            KI     +  G T+F+GY+ L                
Sbjct: 419 FEMTRQRDRARQA-------GDFKISKKNVDIIGVTEFLGYEQLENI------------- 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S + A+V+  ++VEE  +G+   VV  Q+ FYAE+GGQ+GD+G      I
Sbjct: 459 ----------SSILALVKNSKLVEEIKAGEYGIVVLAQSSFYAESGGQVGDSGVLSNAKI 508

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++    K+  G+F H+ ++ +G+L+   ++   +D ++R+ ++ NHSATHLLH AL  
Sbjct: 509 EFKVDHTNKQKSGVFEHYGVLNKGVLKVGDTIQANVDKKSRKCIARNHSATHLLHAALRI 568

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG  V+Q GS +  + LRFD +H + IT +++  IE  +N  I  N  V T I+N E+A
Sbjct: 569 VLGETVTQKGSLVDSEKLRFDFSHDEVITKSDINKIEGMINRKILGNTKVHTDIINIENA 628

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
               A AL G KY+D VRV+++  +D    S  LCGGTHV   G+I L  I SES + AG
Sbjct: 629 KKKDAIALFGEKYSDTVRVLTMGKDD---FSVELCGGTHVKQLGDIGLFRITSESGVSAG 685

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG  A          L  ++   K +   VV +V +  ++ ++L+      + 
Sbjct: 686 VRRIEALTGYDAYQFDNQMQNSLSEISQMTKSNNAQVVEKVTQFIKQQKELEEQITIFQK 745

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           QL             ++ ++  +S ++     K+L+++ D L+ K+ S +I+L  +S + 
Sbjct: 746 QLTSNQGDDLIGQVQEVRNIKLLSTVVEGSSGKDLRNIADKLKDKLGSAVIVLAVVSND- 804

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S+++ VT+DL  R+ AV +    A+ + GG GGGRP MAQ GG       +A+A V S
Sbjct: 805 KVSLVVGVTKDLTKRYQAVKILNYVAEQI-GGKGGGRPDMAQGGGTQPEYLAKALASVKS 863

Query: 895 FL 896
            +
Sbjct: 864 LI 865


>gi|220903571|ref|YP_002478883.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867870|gb|ACL48205.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 892

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/916 (39%), Positives = 517/916 (56%), Gaps = 42/916 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +L+FF ++ HE++ S  +IP NDP+L+F NSGMV FK +F G+EK  Y  
Sbjct: 1   MLTAKEIRRRYLDFFHRHQHEIVASGPIIPPNDPSLLFANSGMVQFKKLFLGEEKRSYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R  GKHNDL+NVGRT RHHTFFEMLGNF+FG YFK  AI  AWD +TKE +L
Sbjct: 61  ATTCQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFAFGDYFKREAITWAWDFVTKELEL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+ ED+EA  LW +I+GL A++I+R+   DNFW+M +TGPCGPCSEI+ DQG
Sbjct: 121 PKEKLWVTVFREDDEAAVLWAEIAGLPAERIVRMGEKDNFWTMGDTGPCGPCSEIYVDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +  G      + + +R++EIWNLVF QF+Q     R +L + +IDTGMGLERMA V Q
Sbjct: 181 ADMSCGPDCGIGNCDCDRFLEIWNLVFTQFDQSADGTRTLLARPNIDTGMGLERMAAVAQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY------EGNNIVNHRVIVDHLRSSSFLIADGILP 292
            K +N+D DLF+ +IQ +  + G+ Y        +     RVI DH R+++FL+A G+LP
Sbjct: 241 GKRSNFDCDLFQDIIQYAAGLAGVTYSFSAPDTNDVDTALRVIADHSRAAAFLVAGGVLP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRR++RRA+ +A L+G  EP M  +   +   MG AYPEL+++   I+  + 
Sbjct: 301 SNENRGYVLRRLIRRALRFATLMGVHEPFMHKVARKVTEVMGDAYPELVESADFIDRAVF 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF  TL +GL LL+  L+ L    I  + GD  FKLYDT+G PLDI+ D+   RG 
Sbjct: 361 EEEQRFSLTLKKGLDLLEEELAALKARGITLIPGDFCFKLYDTYGFPLDIVTDVAEKRGF 420

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI----WFSLKEKYGATQFIGYDLLRGS 466
              D   F + ++EQR RAR H    G     +     + SL +    ++F+GY+ L   
Sbjct: 421 HA-DAEGFEKYMQEQRKRARDHQKKGGLLGQGEDGQSPFKSLADGGAESRFVGYEGLTAQ 479

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +                         +   G+ V+    G+    V + TPFY E GG
Sbjct: 480 SPVT----------------------ILLDAAGQPVDVLGEGESGYAVTEATPFYGEGGG 517

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q GDTG         ++    K A  + VH   V RG +     + L +D   R+  + N
Sbjct: 518 QAGDTGLMSATSGEARVLTTHKPAPQLLVHEIEVVRGEILQGKEVRLAVDPDERKATARN 577

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ THLLH AL  +LG HV Q GS +    LRFD +H   +T  EL ++E  VN  I  +
Sbjct: 578 HTCTHLLHAALRRVLGPHVKQAGSLVDGRRLRFDFSHIAALTPEELAAVERQVNAAILAD 637

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-SSALCGGTHVSSTGEI 705
           L V  R M   DA+A+GA AL   KY   VRV++V   +     S  LCGGTH++ TGE 
Sbjct: 638 LEVSAREMPMADAVAAGAIALFNEKYGSTVRVLTVAGAEMCDPESVELCGGTHLARTGEA 697

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
              +IVSES + AG+RRIEA+TG  A  H + Q  +L SLA+ LK   G +  RV+ +  
Sbjct: 698 GAFFIVSESGVAAGMRRIEAVTGWNAYGHAVEQRAELGSLAALLKSKPGQLAERVQTLHG 757

Query: 766 EYRKLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           E +KL+    K                ++  V  ++  +  V  K L+ VMD ++ ++  
Sbjct: 758 EVKKLRKASEKAAAAPASGAELVARAVEVNGVRLLAARLDNVPVKALREVMDDVRSRLSE 817

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             +  +   +E K  +L+ V++DL  RF A  L +  A    GG GGGRP MAQ+GG   
Sbjct: 818 NAVACLATVEEGKVGMLVYVSKDLHGRFTAPALIKTVAAPC-GGSGGGRPDMAQAGGNQP 876

Query: 883 NKADQAIAGVASFLKK 898
               +A A +   +++
Sbjct: 877 EGLAEAFAALKKCIEQ 892


>gi|303245636|ref|ZP_07331919.1| alanyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302492899|gb|EFL52764.1| alanyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 880

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/908 (41%), Positives = 524/908 (57%), Gaps = 42/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  FL+FF   GH+ + SS LIP  DP+L+FTN+GMV FK +F GQ+KP Y+ 
Sbjct: 1   MMTAHEIRAKFLDFFAAQGHQKVASSPLIPREDPSLLFTNAGMVQFKKVFLGQDKPGYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT+   L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTEVIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY TVY +D+EAF LW+K++GLS D+I R+   DNFWSM +TGPCGPCSEI +D+G
Sbjct: 121 DKSRLYATVYQDDDEAFGLWQKVAGLSPDRIYRLGEKDNFWSMGDTGPCGPCSEIMYDRG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G      + + +RY+EIWNLVFMQ++Q    ER  LP+ SIDTGMGLER+A V+Q
Sbjct: 181 EEVSCGPDCGIGTCDCDRYLEIWNLVFMQYDQLESGERVALPRPSIDTGMGLERIAAVVQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+DIDLF+ +I  +  + G+ Y   +      RVI DH R+ +FL+ADG++P+NEG
Sbjct: 241 GVHSNFDIDLFQTIIATAASIAGVTYGATDEQDTALRVIADHSRAVAFLVADGVMPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ + +L+G ++P +      +   MG AYPEL+  +  +E  +R E+E
Sbjct: 301 RGYVLRRLIRRALRFGKLIGLSDPFLFKTAGTVVEVMGDAYPELVATRDFMERMVREEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RFG TLD+GL +L   L  +    ++ + G  AFKLYDT+G PLDI+ D+   RG+   D
Sbjct: 361 RFGVTLDKGLAILAEELDRMEAAGEKTITGQFAFKLYDTYGFPLDIVNDVAGKRGITT-D 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              +   + EQ++RA+    G G      ++  L E    ++F+GY+ L           
Sbjct: 420 EDGYKACMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFVGYETL----------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S V A++  +G+ VE   +G+    V   TPFY E+GGQ GD G 
Sbjct: 469 ------------TAQSRVNALISAEGQAVERLTAGETGYAVCAVTPFYGESGGQAGDVGA 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    +T   K    +  HH  +  G +  +    L +D   R   + NH+ THLL
Sbjct: 517 ITTLTGNATVTGTIKAGPELTAHHITIAAGEILLDQEADLAVDTAVRAATARNHTCTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV+Q GS +TPD LRFD TH   +T  EL  +ED VN  I  + PV T +
Sbjct: 577 HKALKNVLGSHVNQAGSLVTPDRLRFDFTHIAAMTPDELSRVEDEVNAAILLDAPVTTEV 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +  E A A GA AL G KY D VRVV V        S   CGGTH+S+TG+     I++E
Sbjct: 637 LPLEAARAKGATALFGEKYGDTVRVVEVPG-----VSMEFCGGTHLSATGQAGSFLILAE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG RRIEA TG     H+     +L       K   G + GR++++ ++ R L   
Sbjct: 692 SGVAAGTRRIEAATGLNTIKHVREMRGELDESLHAAKAKAGELPGRIKKLQDDIRALTKE 751

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   +L             +I  V  +   +   + K L+  MD L+ K+ SG++ + 
Sbjct: 752 KEQLAAKLASGQGRDLLSGLEEIGGVKVLCAKVDAPNIKALREAMDDLRSKVPSGVVAIA 811

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K S+++ V++DL  RF A  L + +A  +GG G GGRP MAQ+GG N    ++A
Sbjct: 812 AEQDGGKVSLIVAVSKDLHGRFTAPALIKEAAAAVGGSG-GGRPDMAQAGGTNPAGIEEA 870

Query: 889 IAGVASFL 896
            A V + +
Sbjct: 871 FAKVRAVV 878


>gi|326342881|gb|EGD66649.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
          Length = 840

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/875 (43%), Positives = 535/875 (61%), Gaps = 56/875 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           +FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 2   LFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 61

Query: 97  SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI
Sbjct: 62  SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 121

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFM
Sbjct: 122 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 181

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     
Sbjct: 182 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD-- 239

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
            +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 240 LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 299

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + L+G+ 
Sbjct: 300 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGET 358

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR              + 
Sbjct: 359 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYN 411

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
           ++     A++F GYD L                        ++  V A+   G+ V+   
Sbjct: 412 AMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 448

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   +  G L+
Sbjct: 449 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLK 507

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ 
Sbjct: 508 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 567

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     
Sbjct: 568 MKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 622

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A
Sbjct: 623 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVA 682

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII 801
             LK    N+  +V  + E  R+L+    + K Q   ++          +  V  +   +
Sbjct: 683 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 742

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+
Sbjct: 743 SGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 801

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 802 QV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 835


>gi|325496257|gb|EGC94116.1| alanyl-tRNA synthetase [Escherichia fergusonii ECD227]
          Length = 839

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/875 (43%), Positives = 535/875 (61%), Gaps = 56/875 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI
Sbjct: 61  SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFM
Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     
Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD-- 238

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
            +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 239 LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + L+G+ 
Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGET 357

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR              + 
Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYN 410

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
           ++     A++F GYD L                        ++  V A+   G+ V+   
Sbjct: 411 AMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   +  G L+
Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLK 506

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ 
Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     
Sbjct: 567 MKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A
Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVA 681

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII 801
             LK    N+  +V  + E  R+L+    + K Q   ++          +  V  +   +
Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+
Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 801 QV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 834


>gi|301026644|ref|ZP_07190061.1| alanyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|299879631|gb|EFI87842.1| alanyl-tRNA synthetase [Escherichia coli MS 196-1]
          Length = 839

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/875 (43%), Positives = 534/875 (61%), Gaps = 56/875 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI
Sbjct: 61  SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFM
Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     
Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD-- 238

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
            +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 239 LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + L+G+ 
Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGET 357

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR              + 
Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYN 410

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
           ++     A++F GYD L                        ++  V A+   G+ V+   
Sbjct: 411 AMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   +  G L+
Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLK 506

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ 
Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     
Sbjct: 567 MKPEEIRAVEDLVNTQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A
Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVA 681

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII 801
             LK    N+  +V  + E  R+L+    + K Q   ++          +  V  +   +
Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           S V+ K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L  + A+
Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 801 QV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 834


>gi|255263093|ref|ZP_05342435.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255105428|gb|EET48102.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 884

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/893 (47%), Positives = 571/893 (63%), Gaps = 40/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IRT FL++++  GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MPSLNDIRTRFLDYYKSEGHEIVSSSPLVPRNDPTLMFANSGMVQFKNLFTGAESRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+++T+E  +
Sbjct: 61  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAINYAWNMVTRELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY +D+EA  +WKK++GLS DKIIRI T+DNFW M  TGPCGP SEIF+D G
Sbjct: 121 NKDKLVVTVYHDDDEAAAIWKKVAGLSDDKIIRIATDDNFWMMGSTGPCGPSSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRSPLPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLIRALIEASANATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +PLM  L+P+L  +MG+AYPEL QA+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHVHLLGAQDPLMHRLVPSLVGQMGAAYPELGQAQALIEETLRLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  L  L +   L G  AFKLYDT+G PLD+ QD L  +G  G+D   F+
Sbjct: 361 QTLERGLRLLDDELDGLAEGTDLPGQAAFKLYDTYGFPLDLTQDALREKGR-GVDSDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ+++ARA   G G      IW  + ++ GAT F+GYD                  
Sbjct: 420 EAMAEQKAKARAAWSGSGETVDATIWLDIADRDGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + + AIV+ G  ++ A  G  V++V +QTPFY E+GGQ+GDTG    DG+
Sbjct: 462 -----TETAEAQITAIVKHGAEIKSATVGDTVQIVVNQTPFYGESGGQVGDTGVVHADGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD +K A  +F+H A + +G      ++ L +D   R Q+  NHSATHLLH AL  
Sbjct: 517 SARVTDTRKTAG-VFIHIAEITKGTFEVGTAVELNVDPTRRSQIRANHSATHLLHEALRQ 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H K ++  +L+S+E  VN  I QN  V TRIM  +DA
Sbjct: 576 SLGDHVAQRGSLNAPDRLRFDFSHGKALSLEQLQSVEAEVNAYIRQNTGVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+           G  +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 RELGAQALFGEKYGDEVRVVSMGAQPNSGRGSLGNTYSLELCGGTHVGRTGDIGAFVMLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  +G+RRIEA++GQ A  +L  QD +L  +AS LK    +   RV+ + +E + L  
Sbjct: 696 DSASSSGVRRIEALSGQAAMDYLRTQDGRLAEVASVLKTPAADAPARVKALMDERKALAN 755

Query: 773 IHAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             A+ + +L V      +  +   +    F++ ++S V  K+L +++D  + +I SG ++
Sbjct: 756 EVAQLRRELAVSGGGQTDAPAAEDVNGTKFLAQVVSGVTGKDLPALVDDYKAQIGSGAVL 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           L+  +  K A     VT D  +  +AVDL R +   LGG GGGGRP MAQ GG
Sbjct: 816 LIADAGGKAAV-AAGVTADKAEAVSAVDLVRAAVAELGGKGGGGRPDMAQGGG 867


>gi|119478765|ref|ZP_01618604.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119448344|gb|EAW29599.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 874

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/924 (38%), Positives = 527/924 (57%), Gaps = 78/924 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF++ GH  + SSSL+P NDPTL+FTN+GMV FK++F GQ+   Y   
Sbjct: 1   MKSSEIREAFLCFFEEKGHTRVASSSLVPGNDPTLLFTNAGMVQFKDVFLGQDHRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAFAWEFLTAAEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           +   +L +TVY +D EA+ +WK    +  ++IIRI  N       DNFWSM +TGPCGPC
Sbjct: 121 IPADKLTVTVYADDSEAYDIWKNEMLVPEERIIRIGDNKGVKYASDNFWSMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G  I GG P    E+G+R+IEIWN VFMQ+ + +      LP  S+DTGMGLE
Sbjct: 181 SEIFYDHGPEIEGGPPGSPDEDGDRFIEIWNNVFMQYNRSSDGTMADLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A V+Q+  NNY+IDLF++L+ A+ +V G+        + RVI DH+RS +FL+ DG+L
Sbjct: 241 RIAAVMQDVHNNYEIDLFQNLLNAAAKVLGVND--TTDTSLRVIADHIRSCAFLVVDGVL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   +G  E     L+  L  EMG+AYPEL + +  IE+ L
Sbjct: 299 PSNEGRGYVLRRIVRRAVRHGNKMGAKEAFFYRLVAPLALEMGAAYPELPKLQSRIEKVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
            +E+++F KTLD+G+ +L+  L +L   EI  G+  FKLYDT G P+D+  DI   RGL 
Sbjct: 359 LTEEQQFAKTLDQGMRILEADLDNLSGKEI-PGETIFKLYDTFGFPVDLTGDIARERGLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+  QR RAR+ S       ++       +  G T F GYD L+       
Sbjct: 418 -LDEPGFEKAMNAQRQRARSASHFKMELPSD------IDIDGETIFSGYDSLQ------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + A++  GE+V+    G++  VV   TPFY E+GGQ+GD+
Sbjct: 464 ----------------AECEITALLNGGELVDRLTEGEQGVVVLASTPFYGESGGQIGDS 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  +++  K A+   +HH ++ +G L     + + +D   R+  ++NHSATH
Sbjct: 508 GFMEVGATRFDVSETTKNADN-HLHHGVILQGGLSVGDKVSVQVDENVRQATTLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +T+ +L  IE  VN  I  N  V T
Sbjct: 567 LLHAALRQVLGDHVTQKGSLVDSKKLRFDFSHFEGLTADQLAEIETIVNQHIRHNSEVTT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + + A   GA  L G KY D+VRV+++        S+ LCGGTHVS TG I L+ I 
Sbjct: 627 TVTDMDHASELGAMMLFGEKYGDQVRVLAMG---DDGFSTELCGGTHVSRTGNIGLMRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG+RRIEA TG  A +     + ++  +A+ +K S+ NV  +++++ E +++L+
Sbjct: 684 AESGIAAGVRRIEATTGATALALFSDTERRIGEIAALVKGSRENVASKIQQVLESHKQLE 743

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              ++ K ++              +  +  ++  +   D K L   +  L+ K+ S +++
Sbjct: 744 KELSRLKSKMASAAGSELADQAVDVNGIRVVACQLEAADMKTLDDTVSKLKDKLGSSVVL 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL------------GGGGGGGRPHM 874
           L  I  + K ++   V+ DL+ +  A DL +  A ++            G          
Sbjct: 804 LASIDGD-KINLACGVSSDLIKQVRAGDLMKYFAPLVGGKGGGKPDKAKG---------- 852

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
               G +      A+A VA ++++
Sbjct: 853 ---AGSDIAALPSALASVAVWVEE 873


>gi|134302304|ref|YP_001122273.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|205830098|sp|A4IZ01|SYA_FRATW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|134050081|gb|ABO47152.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 865

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 531/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L  D  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +G L     L   +  + R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|51244680|ref|YP_064564.1| alanyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|59798523|sp|Q6AQ16|SYA_DESPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50875717|emb|CAG35557.1| probable alanyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 882

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 558/910 (61%), Gaps = 45/910 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR+ FLE+F+ NGH +  SSSL+P +DPTL+FTN+GMV FK +F G +K  Y   
Sbjct: 1   MKGNEIRSRFLEYFKGNGHTVAESSSLVPKDDPTLLFTNAGMVQFKRVFMGDDKRGYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+LAW+ LT E  L 
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIRLAWNFLTVELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             +++++V+++D+EAF LW+K+  L   +I+R+   DNFW+M +TGPCGPCSEI  DQG 
Sbjct: 121 AEKMWVSVFEDDDEAFALWEKVEDLPKGRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGV 180

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                         + +R++E+WNLVFMQF +        LP+ SIDTGMGLER+A VLQ
Sbjct: 181 GSSPCDNPNCAVGCDCDRFLELWNLVFMQFNRAEDGSLTALPRPSIDTGMGLERVAAVLQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K NNYD DLF  +I   E ++G+KY    +     RVI DH R++SFL+ADG+LP+NEG
Sbjct: 241 GKFNNYDSDLFAPIIAVLEDISGVKYGAAADTDTAIRVIADHARATSFLVADGVLPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRIMRRA+ Y + LG  +P M  +  A+C EM +AYP+L+    L+E+ + +E+E
Sbjct: 301 RGYVLRRIMRRAVRYGKKLGLEKPFMDRVTKAVCAEMQNAYPQLVATAALLEKVVNNEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGK---DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           RF +TL+ GLV LD  +S L     D +++G   FKLYDT G P DI++DI   RG  G 
Sbjct: 361 RFRETLEHGLVQLDEKISQLLTSGGDAVIDGPFIFKLYDTFGFPFDIVRDIALERG-VGF 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+ EQR+++RA   G G    ++   +L +     +F+GY+ L          
Sbjct: 420 DEAGFATAMAEQRAKSRASRKGEGVKLHDEGVKALADAGKKAEFLGYEGLEAD------- 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           S+V+ ++ + G  VE+ V+G+K  V    TPFYAEAGGQ+GD G
Sbjct: 473 ----------------SVVEGLLSEQGSGVEKLVAGEKGRVFVAATPFYAEAGGQMGDRG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G +  +   Q +  G+ +H  +VE G L   + + L +D + R+  + NHSATHL
Sbjct: 517 SVRWQGGQASVYATQAEGTGLILHDLLVEEGELSLGLEVTLQVDDEERKATASNHSATHL 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL ++LG HV Q+GS + P+ LRFD T+   +T+AE+  +E  VN+ I  N  + T 
Sbjct: 577 LQAALISVLGDHVKQSGSLVGPERLRFDFTNFSQLTAAEIAQVETLVNEQIRNNAVIATD 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           ++++++AIA GA AL G KY+D VRVVS+     G +S  LCGGTHV +TGEI L  I+S
Sbjct: 637 VLSKQEAIAGGATALFGEKYDDDVRVVSM-----GDYSRELCGGTHVGATGEIGLFVILS 691

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG+RRIEA+TG+ A +++ G+      LA  L    G++V +VE +    ++ + 
Sbjct: 692 ESGIAAGVRRIEALTGRAALAYVQGRLSTGNELADLLSCKSGDLVPKVESLLTAVKEGEK 751

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A+   QL    L     +   +A +  +   +   ++K L+ + D ++  ++SGI ++
Sbjct: 752 RVAQLAGQLASSGLDDLLNNALTVAGIKVVVAEVPLENAKALRELGDKVRDNLESGIAVI 811

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G     K ++L +VT+DL+DR  A  +    + ++GG G GGRP MAQ+GG   +K  +
Sbjct: 812 GGAV-GGKVALLAIVTKDLVDRIQAGRIVSEVSGIVGGKG-GGRPDMAQAGGTMPDKLSE 869

Query: 888 AIAGVASFLK 897
           AIA V + ++
Sbjct: 870 AIASVPAIIE 879


>gi|320180884|gb|EFW55807.1| Alanyl-tRNA synthetase [Shigella boydii ATCC 9905]
 gi|320189025|gb|EFW63684.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
          Length = 839

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/875 (43%), Positives = 535/875 (61%), Gaps = 56/875 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI
Sbjct: 61  SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFM
Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     
Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD-- 238

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
            +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 239 LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + L+G+ 
Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGET 357

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR              + 
Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYN 410

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
           ++     A++F GYD L                        ++  V A+   G+ V+   
Sbjct: 411 AMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   +  G L+
Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLK 506

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ 
Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     
Sbjct: 567 MKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A
Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVA 681

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII 801
             LK    N+  +V  + E  R+L+    + K Q   ++          +  V  +   +
Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+
Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 801 QV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 834


>gi|194365256|ref|YP_002027866.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|194348060|gb|ACF51183.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 882

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/892 (42%), Positives = 536/892 (60%), Gaps = 49/892 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ LW+ + G+  ++I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGIPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI+ + ++TG         + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    L+P L  +MG AYPEL  A   +   L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAADTVTRALQAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V      + ++ G  AF+LYDT+G PLD+ QDI   R L  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAGKAS-NGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I  F+ A+E+QR  ARA       G    +   L      T+F+GYD L+          
Sbjct: 424 IAGFDAAMEQQRETARAAGKF---GGGVTLPAELVATLSPTRFLGYDRLQADGL------ 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++ G  V+ A +G  V V+ +QTPFYAE+GGQ+GDTG  
Sbjct: 475 ----------------TVLAVLKDGRPVQSANAGDAVIVITNQTPFYAESGGQVGDTGVL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G+RL + D QK A     H  I+  G L+    L   +D + R    +NHSATHLLH
Sbjct: 519 TGNGVRLAVEDTQKFAGQFHGHVGILSEGGLKVGDVLSGQVDGERRGATILNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PI++ EL  IE  VN  +  N       M
Sbjct: 579 AALREVLGTHVQQKGSMVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHNM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 639 GMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  ++  ++ +L   A  L  S  +VV ++  + +  ++L+   
Sbjct: 694 GVSAGVRRIEAVTGQGALDYVDAEEARLAEAADLLGGSAADVVEKIRALGQRQKQLEREL 753

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K ++     +       ++A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 754 ESVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAVIVLAG 813

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ KA+++  V    + +  A +L    A  +GG G GGRP +AQ GG +
Sbjct: 814 A-QDGKAALVAGVNGSAMGKVKAGELLSHIAGQIGGKG-GGRPDLAQGGGED 863


>gi|254374194|ref|ZP_04989676.1| alanyl-tRNA synthetase [Francisella novicida GA99-3548]
 gi|151571914|gb|EDN37568.1| alanyl-tRNA synthetase [Francisella novicida GA99-3548]
          Length = 865

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/900 (42%), Positives = 529/900 (58%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L  D  ++G+VAFKLYDT+G P D+  D+   +G   +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGFK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQFKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  +    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRYTFTSENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|146328813|ref|YP_001209206.1| alanyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
 gi|205830079|sp|A5EW88|SYA_DICNV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146232283|gb|ABQ13261.1| alanyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
          Length = 873

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/899 (40%), Positives = 520/899 (57%), Gaps = 56/899 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F +NGH+++ S+SL+P NDPTL+FTN+GMVPFK +F G E   Y+  
Sbjct: 4   MTTAEIRRAFLNYFSENGHKIVHSASLVPGNDPTLLFTNAGMVPFKELFIGTETRDYRRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT+   L 
Sbjct: 64  TSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWRFLTEVLQLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             +L +TVY ED+EA+++W++  GL AD+IIRI           DNFW+M +TGPCGPC+
Sbjct: 124 AEKLLVTVYHEDDEAYRIWQEKIGLPADRIIRIGDKAGKAKYESDNFWAMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+R+IEIWN+VFMQFE+  +     LPK SIDTGMGLER
Sbjct: 184 EIFYDHGAEIFGGRPGSADEDGDRFIEIWNIVFMQFERDAEGTMKPLPKPSIDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A V+Q   +NYDIDLF HLI A+ +  G K       + +VI DH+R++ FL+ DG+LP
Sbjct: 244 IAAVMQGVHSNYDIDLFIHLIDAAAKAVGCK--NEGQASLKVIADHIRATVFLMVDGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRIMRRA+ +   LG        L+ AL  EMG AYPE+I  +  I ET+R
Sbjct: 302 SNEGRGYVLRRIMRRAIRHGYKLGQQGLFFHKLVAALVAEMGEAYPEIIAEQARITETIR 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ RF +TL  G+ +L+  L+ L    I++G+  FKLYDT+G P+D+  DI   RGL  
Sbjct: 362 KEELRFAQTLTAGMQILEQDLATLK-GTIISGETVFKLYDTYGFPVDLTNDIARERGLT- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   +   ++ QR RA+A        T            G T F+ Y            
Sbjct: 420 LDEAGYEALMQAQRERAKASGTFRADKTYTVS--------GKTAFLAYQQ---------- 461

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S ++AI  Q +  +    G +  +V +Q+PFY E+GGQ+GD+G
Sbjct: 462 -------------EQTESTIEAIFVQEQAADTLDCGDEAVLVLNQSPFYGESGGQIGDSG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     ++D QK+ + + +H   ++RG+L    ++   ID   R  +  +HSATHL
Sbjct: 509 VIYHQNGAFLVSDTQKQGDVL-LHFGRLQRGVLSVGDTVCAEIDRARRAAIRRHHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG+HV Q GS +  D LRFD +H   +T+AE+ ++E  +N+ I +N PV   
Sbjct: 568 LHQALRMTLGTHVQQKGSLVDADKLRFDFSHDAALTAAEIGAVEQLINEQILRNQPVNIS 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  + A A GA AL G KY D VRVV +  +D    S  LCGGTHV  TG++ L+ I++
Sbjct: 628 EMPYDQACAQGAMALFGEKYGDIVRVVKMGADD---FSVELCGGTHVKQTGDLGLVKIIA 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S++ AGIRR+E + G  A  +   Q+ +L+ +A+ LK    + V ++E + ++ + L+ 
Sbjct: 685 QSAVAAGIRRVECVAGLAALRYCQQQETQLQRIAAVLKSDLEHSVEKIERLQQDTKTLEK 744

Query: 773 IHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K  + +        S   I     M+    ++D+  L+   D L+ K Q  ++++
Sbjct: 745 TVQQLKRTVALGGTQETAESVVDIHGWKTMAVRRDDLDNAILRDTADQLRDKYQLDVVVI 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                E  A +++ V +       A  + +  A  +  G GGGRP  AQ+GG N    D
Sbjct: 805 GSSDGE-MARLVVSVAKSAAA-LKAGAIVQTLAAFI-DGKGGGRPDFAQAGGKNIQGLD 860


>gi|291286777|ref|YP_003503593.1| alanyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883937|gb|ADD67637.1| alanyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 877

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/905 (39%), Positives = 515/905 (56%), Gaps = 43/905 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FLE+F ++GHE++ SSSL+P +DPTL+FTN+GM  FK+ F G+E   Y   
Sbjct: 3   MTGQEIRKKFLEYFAEHGHEIVSSSSLVPHDDPTLLFTNAGMNQFKDTFLGRETRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QK VRAGGKHNDL+NVG T+RHHTFFEMLGNFSFG YFKE AI+  W+ LTK   L 
Sbjct: 63  TTSQKVVRAGGKHNDLENVGVTSRHHTFFEMLGNFSFGDYFKEDAIKFGWEFLTKVVGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +++++VY++DEEA ++W+ + GL A  I      DNFW+M +TGPCGPCSEI  DQGE
Sbjct: 123 AEKMFVSVYNDDEEAAQIWRDVIGLDAKDIEYRGEKDNFWAMGDTGPCGPCSEIHIDQGE 182

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P    + E +R++E+WNLVFMQ+ +        LPK SIDTGMGLER+A+V+Q 
Sbjct: 183 HTGCQSPDCDRNCECDRHLELWNLVFMQYNRSEDGTLTPLPKPSIDTGMGLERVASVVQG 242

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DLF  +I+    + G KY     + V+ RVI DH R+++FLI DG+LPAN+GR
Sbjct: 243 VTSNYDTDLFLPIIKYIADLAGKKYGDSEKDNVSMRVIADHSRAATFLIGDGVLPANDGR 302

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRAM + R+LG        +   +   M   Y EL   K  I + + +E++ 
Sbjct: 303 GYVLRRIMRRAMRHGRMLGLEGAFFYKVCGFVVDFMKGHYIELADKKPYIAKVVTNEEQS 362

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TL+ GL ++D +L      + ++G+  FK+YDT G P+D++ DI    G   +D   
Sbjct: 363 FSRTLNTGLKIIDELLEKNKDSKTISGEDIFKMYDTFGFPVDLLADIAEDNGY-VLDNAG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F Q +  Q+ RA+    G G      ++  L      ++F+GY+ L              
Sbjct: 422 FEQEMHTQQERAKKSWSGSGEQRVADVYIKLASTL-KSEFVGYEELE------------- 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V AI++     E A    + +++  +TPFYAE GGQ GD G    D
Sbjct: 468 ----------AESEVAAIIKNDAQSETAEG--ECDIILTKTPFYAEGGGQAGDIGYIKTD 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++T   K  +G+       E G+++   ++   +D   RR    NH++TH+LH AL
Sbjct: 516 TAVFKVTGTHKYGDGMIAMRGFTELGVIKMGETVKAQVDKTARRATERNHTSTHILHKAL 575

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS + P+ LRFD  H  P+++ E+  IE+  N+ I  N  +    MN +
Sbjct: 576 QMVLGDHVRQAGSQVNPERLRFDFNHYAPVSAEEIMRIEEIANEEIQANTALKKTYMNID 635

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA+ SGA AL G KY ++VRVV +     G  S  LCGG HV  TG+I LL + SE+S+ 
Sbjct: 636 DAVNSGAMALFGEKYGNKVRVVEI-----GDFSKELCGGCHVDRTGDIGLLKVTSEASVA 690

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG  A + +   D   K  A  LK +   +  R+ E+ +  +  +    K 
Sbjct: 691 SGVRRIEAVTGMAAVAGMQKLDALAKDGAKLLKTTPDGLYERMVELTDSLKDKEKELKKI 750

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             Q+  +D +        ++ +  ++  ++  D+  ++  +D  + +I SG+++  G   
Sbjct: 751 ADQMASKDAAGLMDDVKIVSGIKVLAAKLANGDADAMRKFVDTARDRIGSGVVV-AGAVT 809

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K   +  VT+D   +  A D+ R  AK+ GGGG GGRP MAQ+GG +  K D+AIA V
Sbjct: 810 DDKVIFVCGVTKDTTGKVKAGDIVREVAKITGGGG-GGRPDMAQAGGKHPEKLDEAIANV 868

Query: 893 ASFLK 897
              ++
Sbjct: 869 EKIVE 873


>gi|224457282|ref|ZP_03665755.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370663|ref|ZP_04986668.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874986|ref|ZP_05247696.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|151568906|gb|EDN34560.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840985|gb|EET19421.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 865

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/900 (42%), Positives = 531/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L  D  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +G L     L   +  + R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGHLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ ++++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSKIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|208779166|ref|ZP_03246512.1| alanyl-tRNA synthetase [Francisella novicida FTG]
 gi|208744966|gb|EDZ91264.1| alanyl-tRNA synthetase [Francisella novicida FTG]
          Length = 865

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/900 (42%), Positives = 530/900 (58%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTNAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L  D  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|313672790|ref|YP_004050901.1| alanyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939546|gb|ADR18738.1| alanyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 873

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/905 (41%), Positives = 553/905 (61%), Gaps = 43/905 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL++F+K+GH+++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MISGKDIREKFLKYFEKHGHKIVDSSSLVPQNDPTLLFTNAGMNQFKDLFLGLEKREYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE  L
Sbjct: 61  ATTCQKVVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEYAWEFLTKELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++++Y +DEEAF++W K+ G+ A+KI+R    DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PEEKLFVSIYYDDEEAFEIWNKVIGIPAEKILRRGEKDNFWSMGDTGPCGPCSEIHIDQG 180

Query: 181 ECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                  P  +   + +R++E+WNLVFMQ+++    +   LPK SIDTGMGLER+  V Q
Sbjct: 181 PEAGCRKPDCNPDCDCDRHLELWNLVFMQYDRSADGKLTPLPKPSIDTGMGLERITAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K +NYD DL K +I+ + ++ G  Y     + V+ RVI DH RS++FLIADG++P+NEG
Sbjct: 241 GKLSNYDTDLIKPIIEFTAKLAGKNYGNNEKDDVSLRVIADHSRSTTFLIADGVIPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRIMRRAM + ++LG+       +   +   MG  Y EL   K  I + +  E++
Sbjct: 301 RGYVLRRIMRRAMRHGKMLGFDGTFFYKVCEFVVDFMGDHYIELKDKKDYISKMVAFEEK 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +TLD GL L+D +L      + ++G   FKLYDT+G P+D++QDI    G   +D++
Sbjct: 361 RFSRTLDLGLKLIDELLEKNKDRKEISGSEIFKLYDTYGFPIDLLQDIAEDNGYK-LDLM 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ +  Q+ RA+ H +G G     +++  L   +  T+F GYD               
Sbjct: 420 GFDKEMALQQERAKKHWVGSGEEKIAEVYKKL--SHLKTEFQGYDN-------------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    + +SS + A+++ GE  +E   G++V+++ +QTPFY E GGQ GDTG    
Sbjct: 464 ---------HSLSSKILALIENGEEKQEVQEGKEVDILLEQTPFYPEGGGQQGDTGTIYS 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                ++ D +K    + VH AIV++G L+   ++   ID   R     NH++THLLH A
Sbjct: 515 REAIAEVKDTKKYGN-LIVHKAIVKKGTLKVGENVTAEIDSVKRIATERNHTSTHLLHKA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +  + LRFD +H + I+  ++  IE  VN II +NL V   +M  
Sbjct: 574 LQMVLGDHVRQAGSLVNDEKLRFDFSHFEAISKDDIIEIERIVNSIIIKNLSVTKTLMPI 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A+ SGA AL G KY+  VRVV V        S  LCGG HV +TGEI    I+ E S+
Sbjct: 634 EEAVKSGAMALFGEKYDRIVRVVEV-----SDFSKELCGGCHVRNTGEIGFFRIIGEMSV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG +A    +     L  +   +KVSQ  +V RV+++ EE + ++     
Sbjct: 689 AAGVRRIEAVTGMKAFDEYVKMKNILDDIMLTIKVSQDQIVSRVKDLLEENKAIKKDLDD 748

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           +K +  ++ +       + I  V  +S  IS  D  +++ + D ++ KI+SGI+++  I+
Sbjct: 749 QKSRELMKMMEDLDRYTYDINGVKLISIKISYPDINKVRELADNIKDKIKSGIVLIAAIN 808

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K ++L  +T DL DRF+A  + +   K+ GGGG GGR   AQ+GG + +K D+A+  
Sbjct: 809 ND-KLTILCGITRDLTDRFSADKIVKEITKITGGGG-GGRSDFAQAGGKDISKLDEALTK 866

Query: 892 VASFL 896
           + SFL
Sbjct: 867 IKSFL 871


>gi|254372737|ref|ZP_04988226.1| hypothetical protein FTCG_00305 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570464|gb|EDN36118.1| hypothetical protein FTCG_00305 [Francisella novicida GA99-3549]
          Length = 865

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 530/900 (58%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTNAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L  D  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGDHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  +     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|56708179|ref|YP_170075.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670650|ref|YP_667207.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|81597416|sp|Q5NFW7|SYA_FRATT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123169359|sp|Q14HB9|SYA_FRAT1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56604671|emb|CAG45729.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320983|emb|CAL09112.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|282159393|gb|ADA78784.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 865

 Score =  844 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/900 (41%), Positives = 530/900 (58%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG  Y +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEVYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L  D  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +G L     L   +  + R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGHLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ ++++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSKIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|258515483|ref|YP_003191705.1| alanyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779188|gb|ACV63082.1| alanyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 878

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/910 (39%), Positives = 539/910 (59%), Gaps = 49/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +FL FF K GH ++PS+SLIP NDP++++T +GMVPFK  FTG   P +  V
Sbjct: 1   MTGNEIRDSFLNFFAKRGHYIIPSASLIPANDPSILWTAAGMVPFKPFFTGAATPEHTRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RHHTFFEMLGNFSFG YFK  AI  AW+ +T    L 
Sbjct: 61  TTCQKCLRT----PDIDVVGKTARHHTFFEMLGNFSFGDYFKTEAINWAWEFVTVNLGLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+I++Y+ D+EAF++W K   + ADKIIR+  + NFW +   GPCGPCSEI+ D GE
Sbjct: 117 KEKLWISIYENDDEAFEIWHKQVAIPADKIIRLGKDTNFWEIG-VGPCGPCSEIYIDLGE 175

Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G    G   + +RY+EIWNLVF+QF +  +     L    IDTGMGLER+A+VLQ+
Sbjct: 176 HRGCGSADCGVGCDCDRYLEIWNLVFIQFFRDEEGNYTPLENKGIDTGMGLERVASVLQD 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N+D DL + ++  + +   + Y  ++   +  +VI DH R+ +F I DG LP+NEGR
Sbjct: 236 VRTNFDTDLLREIMDYTAEQLKVIYGKDDKTDLALKVIADHSRAVTFAIGDGALPSNEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + R LG  E  +  +  A+  +M   Y +L   +  I++ + +E++R
Sbjct: 296 GYVIRRLIRRAVRFGRSLGVDELFLHKVAGAVIHQMSGTYTDLGSNQGHIKKVILNEEKR 355

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL  G  +L+ ++    +  + +++G  AF+LYDT+G PL++ Q+I   +GL  ID 
Sbjct: 356 FSETLANGTEILNKLIEEAIRAGNAVISGLDAFQLYDTYGFPLELTQEIAGEQGL-LIDE 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
            SF QA+E QRSRAR+        +   + + +++++ G T FIGY+ L+          
Sbjct: 415 DSFVQAMESQRSRARSARQETEYISETGVLYKNIRDERGTTNFIGYNALQ---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V A+V+ G+ V+ A +G ++E+V D TP YAEAGGQ+ D    
Sbjct: 465 -------------AEAKVLALVKDGQNVQSAQAGDEIEIVLDITPCYAEAGGQVTDFAVL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + + I+ V K  E + VH   VE G+L+   ++ + +  + R  ++ NHSATHLLH
Sbjct: 512 SGQDLNVMISQVIKPVENLIVHKGKVESGLLQVNDTVKIEVAGERRLSIARNHSATHLLH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS + PD LRFD TH   +++ EL  IE  VN  I  NLPV     
Sbjct: 572 KALKEVLGEHVNQAGSLVEPDRLRFDFTHYAAVSNEELNKIEKIVNRTILSNLPVTVSES 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GAAAL G KY D VRVV +     G  S  LCGGTH+ ST EI L  ++SES
Sbjct: 632 SLSKAREMGAAALFGEKYGDLVRVVKM-----GEFSLELCGGTHIHSTAEIGLFKLISES 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           SI +G+RR+EA+TG+ A  ++  ++++L  LA  +K S   +V RVE I +  ++L+   
Sbjct: 687 SIGSGLRRVEAVTGEGALHYIETKEQQLLMLAHLVKSSPNELVRRVESIIKSVKELEHES 746

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L   ++         I ++  ++   S  D   L++++D L+ KIQSGI+ L  
Sbjct: 747 EALKAKLARFEVENLLSQVKMIKNIKVLAAKASAADMDSLRAMVDLLRDKIQSGIVFL-S 805

Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +   KA+++  VT+DL     +A  L +  A V+GGGG GGRP MAQ+GG + ++  +A
Sbjct: 806 AANNGKANLVAAVTKDLTSIGLHAGKLIKEVAPVVGGGG-GGRPDMAQAGGKDASRIPEA 864

Query: 889 IAGVASFLKK 898
           I  V + + +
Sbjct: 865 IEKVYTVVAE 874


>gi|28198031|ref|NP_778345.1| alanyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182680658|ref|YP_001828818.1| alanyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|32130077|sp|Q87F43|SYA_XYLFT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830289|sp|B2I6K2|SYA_XYLF2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28056091|gb|AAO27994.1| alanyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182630768|gb|ACB91544.1| alanyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|307579119|gb|ADN63088.1| alanyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 884

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/910 (40%), Positives = 539/910 (59%), Gaps = 50/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK     V 
Sbjct: 8   TTSKIRSDFLEFFKNKGHKIVPSAPLVPSNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ ++L  
Sbjct: 68  DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIMWAWELLTQVWELPP 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+E++ LW+ + G+  D+I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I  G      E+G+R+IEIWNLVFMQF++Q+      LP   +DTGMGLER+A
Sbjct: 188 FYDHGEHIPGGPPGSPGEDGDRFIEIWNLVFMQFDRQSDGTLVPLPTPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  + ++T +    N   +  VI DH R+ +FLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNK--SLCVIADHSRACAFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P   +++P L   MG AYP+L  A   +  TL +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLIAVMGDAYPKLQAAAESVMRTLLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMR-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+ +QR  ARA       G   ++          T F+GY+ L+          
Sbjct: 424 MAGFEAAMTQQRKTARAAGKF---GRGVQLSAERAATLSPTVFLGYEQLQADDL------ 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G + + A  G +V V+ D+TPFYAE+GGQ+GD G  
Sbjct: 475 ----------------RVVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           +            +K  G F  H   + +G ++    L  ++    R+ +++NHSATHLL
Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL ++ G+HV Q GS + PD LRFD +H +PI++A++  IE  VND +  N  V+   
Sbjct: 579 HCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPISAAQMTLIERMVNDEVRANHLVMIEQ 638

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A+ +GA AL G KY + VRVV++        S  LCGGTH++ TG+I L  I+SE
Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVTMG------TSVELCGGTHITRTGDIGLFKIISE 692

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  NVV  + ++ +  + L+  
Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANNVVNHIRQLTDRQKTLERE 752

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L    ++        +ADV  ++  +  +D K L+  +D L+ ++   +I+L 
Sbjct: 753 LEKLKGKLISGTITDLLSMAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG +G     A
Sbjct: 813 GVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGEDGPSLRSA 871

Query: 889 IAGVASFLKK 898
           + GVA+++K+
Sbjct: 872 LDGVATWVKQ 881


>gi|317122060|ref|YP_004102063.1| alanyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
 gi|315592040|gb|ADU51336.1| alanyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
          Length = 905

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/894 (41%), Positives = 531/894 (59%), Gaps = 44/894 (4%)

Query: 18  NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDL 77
           +GH ++PSSSLIP +DPTL+FTN+GMV FK++FTG+EK  Y+  TT QKC+RAGGKHNDL
Sbjct: 32  HGHTIVPSSSLIPKDDPTLLFTNAGMVQFKDVFTGKEKVPYKRATTAQKCMRAGGKHNDL 91

Query: 78  DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAF 137
           +NVG+T RHHTFFEMLGNFSFG YFK  AI  AW  LT+E  L + RL+ T+Y ED+EAF
Sbjct: 92  ENVGKTARHHTFFEMLGNFSFGDYFKRDAIHFAWTFLTEELGLPKERLWATIYREDDEAF 151

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEG 194
           +LW++++G+ A +I+R+   DNFW+M +TGPCGPCSEI +D+GE            + + 
Sbjct: 152 QLWQEVTGIPASRIVRLGEKDNFWAMGDTGPCGPCSEIVYDRGEEFRCEAETCAIGACDC 211

Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254
           +R++EIWNLVFMQF +        LP+ SIDTGMGLER+A+V+Q   +N+D DLF+ LI+
Sbjct: 212 DRWLEIWNLVFMQFNRDETGRMEPLPRPSIDTGMGLERIASVMQGVASNFDTDLFRPLIR 271

Query: 255 ASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
           A E++TG +YE        RVI DH R+ +FLIA+G+LP+NEGRG+VLRRI+RRA+ + R
Sbjct: 272 AVEELTGRRYEEGEPGFPFRVIADHARACTFLIAEGVLPSNEGRGHVLRRILRRAVRFGR 331

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           +LG  EP +  L+  +   MG AYPE+ Q    +   +R E+ERF +TLD+G+ +L  V+
Sbjct: 332 ILGIQEPFLYRLVDTVGEVMGGAYPEVRQRADYVARVIRGEEERFFRTLDQGMAILAEVI 391

Query: 374 --SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
             +    D ++ G+ AF LYDT+G PLD+  D     GL  +D   F QA+  QR RARA
Sbjct: 392 ERARARGDGVIRGEEAFVLYDTYGFPLDLTVDAAEEAGLR-VDREGFEQAMAVQRQRARA 450

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                                 AT F GY+ L                            
Sbjct: 451 AREVAEGWDPGSPLALALADEPATVFTGYERLED-----------------------EGT 487

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V+ +V+  + VE A +G++V VV D+TPFYAE GGQ+GDTG     G RL++ D Q    
Sbjct: 488 VRLLVRGDQPVERARAGEEVGVVLDRTPFYAERGGQVGDTGWLEAPGARLEVLDTQPLPG 547

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G F+H A V  G +     +   +D   R  +  NH+ATHLLH AL  +LG HV+Q GS 
Sbjct: 548 GRFLHKARVVEGTVTVGDRVQGRVDAARRAAIMRNHTATHLLHAALKRVLGDHVNQAGSL 607

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           + PD LRFD TH +  T  +L++IED +N +I   +PV     + E+A+ +GA AL G K
Sbjct: 608 VAPDRLRFDFTHFEAPTPDQLRAIEDEINGVILAGVPVRWYWTSLEEALEAGAMALFGEK 667

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y   VRVV +     G +S  LCGGTHV+ST +I L    +E S+ AG+RR+EA+TG  +
Sbjct: 668 YGREVRVVQI-----GDYSLELCGGTHVASTSDIGLFKFTAEGSVAAGVRRVEAVTGWSS 722

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----L 786
             +L  ++  L+ LA  L+V   ++  R+E + E +R L+    + + +L  +       
Sbjct: 723 LEYLRQREAVLQRLAGTLRVPVDDLPERLEALVEAHRDLERQLRQLRGRLARQAADGLLA 782

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
                A V  +   +   D++ L+   D L+++     ++L   S + +A ++  +T   
Sbjct: 783 EAPVAAGVRVIVGELPVDDAEVLRETADYLRQRAGEAAVLLGARSGD-RALLVAAITPGA 841

Query: 847 LDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS-FLKK 898
             R  +A  L    A+ +GGGG GGRP +AQ+GG    +  +A+      +L++
Sbjct: 842 QQRGLHAGRLVGDVARRVGGGG-GGRPDLAQAGGREPGRLAEALDYGRRLWLEQ 894


>gi|315645820|ref|ZP_07898941.1| alanyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315278581|gb|EFU41895.1| alanyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 875

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/913 (39%), Positives = 515/913 (56%), Gaps = 56/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K  F G+ KP    +
Sbjct: 1   MKASEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K   
Sbjct: 61  ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L +TVY EDEEAFKLW +  GL   +II++   DNFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPEKLSVTVYPEDEEAFKLWNEKIGLPESRIIKL--QDNFWEIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           GE    G P S      E ER++E+WNLVF QF          LP  +IDTG GLER A+
Sbjct: 174 GEEYGKGTPESEMFPGGENERWLEVWNLVFTQFNLNKDGSYTPLPNKNIDTGAGLERFAS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   +N+D DLF+ +IQ + ++ G+KY       V  +VI DH+R+  F + DG+LP+
Sbjct: 234 ILQNVDSNFDTDLFQPIIQRTAELAGVKYNDSPEYDVALKVIADHIRTVVFAVGDGVLPS 293

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ Y ++LG  +P M  L   +   MG  YPE+++ +  IE+ + +
Sbjct: 294 NEGRGYVIRRLLRRAVRYGKVLGLDKPFMYTLTETVGDIMGVYYPEVVEKRAFIEKVVAT 353

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KTL  GL +L  V +   K    +++G  AFKLYDT+G P D+ +D     GL 
Sbjct: 354 EEEQFHKTLSDGLGILAEVSAEAKKQGKSVISGSDAFKLYDTYGFPFDLTEDYASENGLT 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EEQR RARA      S   +     L +    ++F+GY+          
Sbjct: 414 -VDREGFDAAMEEQRDRARAARHETESMKIQGGV--LSDYTVKSEFVGYNDT-------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V AIV      +    GQ  +V+ D TPFYAE+GGQ+ D 
Sbjct: 463 ---------------VREAKVLAIVSDDSFADSVSEGQTCQVILDATPFYAESGGQVSDQ 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G  +R ++  + K   G  VH   VE G L+   ++   ++   R  +  NH+ATH
Sbjct: 508 GVLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVTAQVNASMRNDIVKNHTATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN+ + +++PVV 
Sbjct: 568 LLHKALKEVLGDHVNQAGSLVEPQRLRFDFSHFGSITQEELGDIERRVNEQVWKSIPVVI 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T +I +  ++
Sbjct: 628 ERKGIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVGNTSQIGIFKLL 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ES I +G+RRIEA+TG+ A  HL  Q + LK  A  LK +  +V  R+E + ++ + L 
Sbjct: 683 GESGIGSGVRRIEAVTGRYAYEHLEEQLDLLKQAAGLLKSNLTDVPKRIEGLNQQVKDLA 742

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   + +L   + S       ++ +   ++  +       L+ + D L+ K+   I++
Sbjct: 743 RENESLQGKLGAIEASQLTDKVKQVGNTPLLAVEVQAGSMDGLRGIADELKGKLPDAILV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G   + K + ++ V +DL+ + ++A  L +  A V GGGG GGRP MAQ+GG + +K 
Sbjct: 803 L-GSKADDKVNFVVAVPQDLVKKGYHAGKLVKEVASVCGGGG-GGRPDMAQAGGKDASKL 860

Query: 886 DQAIAGVASFLKK 898
            QA+      + K
Sbjct: 861 AQALQHAEELVAK 873


>gi|89256431|ref|YP_513793.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314869|ref|YP_763592.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502533|ref|YP_001428598.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010686|ref|ZP_02275617.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367771|ref|ZP_04983792.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|122325116|sp|Q0BLS9|SYA_FRATO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122500687|sp|Q2A3A9|SYA_FRATH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830095|sp|A7NCD9|SYA_FRATF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89144262|emb|CAJ79545.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129768|gb|ABI82955.1| alanine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253582|gb|EBA52676.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|156253136|gb|ABU61642.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 865

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/900 (42%), Positives = 531/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L  D  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +G L     L   +  + R   + NHSATHLL+ AL  
Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETSIGDIKIVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|328676860|gb|AEB27730.1| Alanyl-tRNA synthetase [Francisella cf. novicida Fx1]
          Length = 865

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/900 (42%), Positives = 530/900 (58%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L  D  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQFKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    I +L   + + K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTKLIAVLTTTNAD-KV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  +     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|308274548|emb|CBX31147.1| Alanyl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 875

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/906 (40%), Positives = 538/906 (59%), Gaps = 45/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FLE+F+K+ H+++ SSSL+P  DPTL+FTN+GMVPFK  F G+EK  Y   
Sbjct: 1   MTGSDIRRQFLEYFKKHDHQIVRSSSLVPVEDPTLLFTNAGMVPFKRTFLGEEKRGYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+A++ AWDLL   F + 
Sbjct: 61  ASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEKAVEYAWDLLVTGFGIP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+++VY +D++A  +W K +G+S D+I+R    DNFWSM +TGPCGPCSEI  D+GE
Sbjct: 121 VDKLWVSVYLDDDQAHDIWHKNAGVSEDRIVRFGDKDNFWSMGDTGPCGPCSEILIDRGE 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      E +RY+EIWNLVFMQFE+    +   LP+ SIDTGMGLER+A+V+Q 
Sbjct: 181 KYGCGKPDCKVGCECDRYLEIWNLVFMQFERDASGKMTPLPRPSIDTGMGLERIASVVQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              NYD DL   +I+ +EQ++  +      + V  +VI DH R+++FLI DGILP+NEGR
Sbjct: 241 VPTNYDTDLIIPIIRKTEQLSQKRLGDSSVSDVAMKVIADHSRAAAFLICDGILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA+ Y R +G  +P +      +   M  AYPE   A+  I   +++E+ R
Sbjct: 301 GYVLRRIMRRAIRYGRNIGLVKPFLHETSQVVIETMKDAYPEFEGAEAFISNVIKNEEAR 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD GL LL+  LS +       ++GD+ FKLYDT+G P+D+++D++    L  +D+
Sbjct: 361 FSETLDNGLRLLNDTLSEIKAKGLNTISGDIIFKLYDTYGFPVDVVRDVVRDENLF-LDM 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN A++ Q+ ++R+ +   G     + + +L       +F+GYD              
Sbjct: 420 DGFNAAMKNQKEKSRSVATFSGIT---EAYKNLSANRLIPEFVGYD-------------- 462

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  IV+ G+   EAV+G  +E+V ++TPFY E+GGQ GD+G   
Sbjct: 463 ---------KQISDSKVLLIVKDGKETAEAVAGSDIEIVTEETPFYGESGGQTGDSGIIS 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
              ++++I D  K A GI +H   +  G +    S+ L++D + R   + NH+ATH+LH 
Sbjct: 514 SSNLKIEIADTIKDAAGIIIHKGKIITGTVSKGQSVTLSVDNKRRSATANNHTATHILHF 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L  ILG HV Q GS ++ + LRFD TH   + S  L+ IE  VN+ I +N       M+
Sbjct: 574 ILKRILGDHVKQAGSFVSSERLRFDFTHFSQVDSDTLEKIETLVNERIRENALTCIEEMD 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A  SGA AL   KY D VRV+S+     G  S  LCGGTH   TG I L  I++ESS
Sbjct: 634 AEKAFKSGATALFEEKYGDVVRVISL-----GEFSKELCGGTHTDRTGNIGLFKIIAESS 688

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TG  A +++    + L   A  +K     +  +VE++  + +  +    
Sbjct: 689 VASGVRRIEALTGAAALNYIQQNMKTLNETARIVKEKPEALPQKVEKMLIQQKAYEKELE 748

Query: 776 KRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K K ++        D     I  V  ++  +   +   L+ + D  + KI+SGI++L G 
Sbjct: 749 KTKAKIASRAADDMDNEIKSINGVKVLAKKVLADNPAALRDLADKFRDKIKSGIVVL-GS 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +   K  ++++VT+DL  +++A ++ +  + V+GGGG GGRP MAQ+GG    K D+A+A
Sbjct: 808 AAGSKVFLIVIVTKDLAGKYHAGNIVKQVSSVVGGGG-GGRPDMAQAGGSIPEKLDEALA 866

Query: 891 GVASFL 896
           G    +
Sbjct: 867 GAYDII 872


>gi|118497373|ref|YP_898423.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|195536062|ref|ZP_03079069.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
 gi|205830097|sp|A0Q604|SYA_FRATN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118423279|gb|ABK89669.1| alanyl-tRNA synthetase [Francisella novicida U112]
 gi|194372539|gb|EDX27250.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 865

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 529/900 (58%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PIEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L  D  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L+  +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRDKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  +     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|187931901|ref|YP_001891886.1| alanyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|205830096|sp|B2SH99|SYA_FRATM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187712810|gb|ACD31107.1| alanyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 865

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/900 (42%), Positives = 531/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E++ F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEKLFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L  D  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q  ++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDDQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +G L     L   +  + R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  D LRFD TH K I+ +E++ IE  VN  I  N PV T  ++++ A
Sbjct: 567 VLGGHAEQKGSLVDEDRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIEISQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDINLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|157364647|ref|YP_001471414.1| alanyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|205830273|sp|A8F866|SYA_THELT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157315251|gb|ABV34350.1| alanyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 858

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/905 (41%), Positives = 549/905 (60%), Gaps = 56/905 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R+ FL FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V
Sbjct: 1   MTGDELRSAFLRFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     ND++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L+
Sbjct: 60  TTCQKCLRT----NDIENVGRTPRHQTFFEMLGNFSFGDYFKKEAIIWAWEFVTEVLKLE 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + RL+ITVY+EDEE+FK+WK I G+   KIIR+  + NFW     TGPCGPCSEI +D G
Sbjct: 116 KDRLWITVYEEDEESFKIWKDIVGVCEKKIIRMGKDTNFWGPAGPTGPCGPCSEIHYDTG 175

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E    G    +   +R++EIWNLVF +F Q  K   + LP+ +IDTG GLER+A+V+Q
Sbjct: 176 LNEDCSDGECTPANSDKRFLEIWNLVFTEFYQDEKGALYPLPRKNIDTGAGLERVASVVQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
           +  +N++ D+FK +I   E V G++Y+ +    ++ RVI DH R+ SFLIADG+ P+NE 
Sbjct: 236 KVESNFETDIFKPIISKIEDVLGVEYKKDEQKDISIRVIADHSRAVSFLIADGVFPSNEE 295

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +  LLG  +P +  +   +   MG+ Y EL   K LI E  R+E+E
Sbjct: 296 RGYVLRRILRRAVRHGVLLGAQKPFLHLINETVIEHMGNTYSELKNRKDLILEVTRAEEE 355

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF KT+ +G  +L  ++S     ++++G+  FKLYDT+G P DI+ D+     L  +D+ 
Sbjct: 356 RFFKTISQGNEMLRDIISR--SSKVIDGEDVFKLYDTYGFPPDIVVDVAKDYNLK-VDLE 412

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + ++ QR RAR+    +    +++I+  L +K   T F+GYD L             
Sbjct: 413 GFEKLMKIQRERARSARNNVEYAKSQEIYDELAQK-SKTVFVGYDTLE------------ 459

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V  + +         SG K E VFD+T FYAE GGQ+ D G  + 
Sbjct: 460 -----------CEAKVIFLKK---------SGTKYEAVFDKTSFYAERGGQVSDVGQIVW 499

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG    +  V    EGI VH   VE+G L+    + L +D + R   + NH+ATHLLH A
Sbjct: 500 DGGSASVEHVFIPVEGIIVHIINVEKGELKEGTKVRLIVDREKRLSTARNHTATHLLHAA 559

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS +TP+ LRFD TH KP+T  EL SIE+ VN+II +++PV+T   + 
Sbjct: 560 LRKVLGTHVKQAGSLVTPEKLRFDFTHHKPLTDNELMSIENMVNEIILRSIPVITEEKSY 619

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+A GA AL G KY D VRVV V        S  LCGGTHV +TG I L  IVSES+I
Sbjct: 620 KEAVAEGAIALFGEKYGDVVRVVKVHS-----FSEELCGGTHVKNTGNIGLFRIVSESAI 674

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G RRIEAITG    ++L  +++ + ++   L  SQ  ++ ++E + E+   LQ    +
Sbjct: 675 SSGTRRIEAITGFNTLNYLRVKEQLVGNICEKLGTSQDEILSKIENLIEKNINLQKELQQ 734

Query: 777 RKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            K +L V  L      +I ++ F+  + ++++S EL+++ D       S + +L   SK+
Sbjct: 735 FKSKLLVSQLKQTPFEQIKNIRFVHCVFNDIESNELRNLSDIAVAGENSTVALLFSTSKD 794

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K ++++ VT+DL  +  A D+A+ +A++L GG GGGRP  AQ+GG + +K +  I    
Sbjct: 795 -KVNLIVRVTQDLAKKIKAGDIAKYAAQILEGG-GGGRPDFAQAGGKDPSKINSVIEYTR 852

Query: 894 SFLKK 898
             L++
Sbjct: 853 KLLEQ 857


>gi|254369401|ref|ZP_04985413.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122351|gb|EDO66491.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 865

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/900 (41%), Positives = 530/900 (58%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++II I ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIHIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L  D  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E   +H   + +G L     L   +  + R   + NHSATHLL+ AL  
Sbjct: 508 EFVVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETSIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|329114349|ref|ZP_08243111.1| Alanyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326696425|gb|EGE48104.1| Alanyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 898

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/886 (47%), Positives = 566/886 (63%), Gaps = 31/886 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IRT FLE+F  NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE   Y  
Sbjct: 18  MLTTNEIRTAFLEYFASNGHQIVPSSSLVPKNDPTLLFTNAGMVQFKNVFTGQETRPYSR 77

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI+ AW+L+TK F+L
Sbjct: 78  ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWNLVTKGFNL 137

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TV+ EDE+A  LW+ I+GL   +IIRI T+DNFW M +TGPCGPCSEIFFD  
Sbjct: 138 PKDKLLVTVFAEDEDAAGLWRSIAGLDDSRIIRIPTSDNFWRMGDTGPCGPCSEIFFDHG 197

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +   G      E+G+R++EIWNLVFMQ+ +     R  LP+ SIDTG+GLER A ++Q 
Sbjct: 198 PDVPGGPPGSPDEDGDRFVEIWNLVFMQYFEDPPGTRSPLPRPSIDTGLGLERFAAIMQG 257

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D F  LIQAS  +T    +G    +HRV+ DHLRS++FLIADG+LP+ +GRGY
Sbjct: 258 KRDNYDTDTFVALIQASADLTHQAADGPFKASHRVVADHLRSTAFLIADGVLPSKDGRGY 317

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  ++G TEP    LLPAL  +MG AYPEL+  + LI ET+R E+ERF 
Sbjct: 318 VLRRIMRRAMRHLHMMGTTEPTFYKLLPALIQQMGGAYPELVHGEALIRETMRGEEERFK 377

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL LL+   SHL     L GDVAF+LYDT G PLD+ QD L   G   +D+  F 
Sbjct: 378 AMLDRGLHLLEEEKSHLASGAPLPGDVAFRLYDTFGFPLDLTQDALRGSGH-DVDVKGFE 436

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR RARA   G G    E IWF  ++K+GA++F+GY                   
Sbjct: 437 DAMSVQRQRARAAWTGSGDTAVETIWFEARDKFGASEFLGY------------------- 477

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V+A++     ++EA  G +V V+ +QTPFY E+GGQ GDTG     G+
Sbjct: 478 ----STEQADGEVQAVIAGNAFLKEAPVGSEVAVLLNQTPFYGESGGQAGDTGFLTASGV 533

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ ITD QKKA  + VH+  V  G LR  M++  T+D+  R  +  +HSATHLLH AL  
Sbjct: 534 KVAITDTQKKAGDLIVHYGTVTEGTLRPGMAVTATVDHDRRSAIRAHHSATHLLHEALRR 593

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS  T + LRFDV+  +PIT  EL +IE  VN+ I +N  VVTR M  ++A
Sbjct: 594 HLGAHVAQKGSLNTAERLRFDVSQPRPITDEELAAIEAEVNNRIRENSQVVTRSMTPDEA 653

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           IA GA AL G KY D VRVVS+          S  LCGGTHV+ TG+I    IVSES + 
Sbjct: 654 IAEGATALFGEKYGDEVRVVSMGAGADNKAPWSMELCGGTHVNRTGDIGQFRIVSESGVS 713

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+ G+ A+   +  +++L  +A+ +KVS  +   R+  + EE R+++   A  
Sbjct: 714 AGVRRIEAVAGKAAQDLTVSNEQRLTQMATMMKVSVADAPERLAAVLEERRQMEKQIAHL 773

Query: 778 KLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + QL   +++     KI      +  + E   +ELK + + + K+  + +++L+  + + 
Sbjct: 774 QRQLATGNVAAAGVDKIGAARLATRNVGETPPRELKGLAETILKQGNADVVVLISTA-DG 832

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           K SV+  V  +++++ +AV L R ++  +GG GGGGR  MAQ+GGP
Sbjct: 833 KGSVVAAVGPEMVEKVDAVALVRTASAAMGGKGGGGRRDMAQAGGP 878


>gi|15606507|ref|NP_213887.1| alanyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|6226165|sp|O67323|SYA_AQUAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2983727|gb|AAC07289.1| alanyl-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 867

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/902 (39%), Positives = 528/902 (58%), Gaps = 48/902 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+  T
Sbjct: 4   SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   L +
Sbjct: 64  SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +DEEA+++W +  G+ +++I R+   DNFW M + GPCGP SEI+ D+GE 
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G         ERY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ K +
Sbjct: 184 YEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ID+   LIQ  E+V+G KY  +    V  RVI DHLR+ +F I+DG++P+NEGRGYV
Sbjct: 236 NFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRAM +   LG   P +   +  +   M   YPEL  ++  ++  ++ E++RF K
Sbjct: 296 IRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIK 355

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G+  +  V+        + L+G   F  YDT+G P+D++ +I   +GL GID+  F
Sbjct: 356 TLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              LEEQR RAR     + +   + ++  LKE    + F+GY+ +               
Sbjct: 415 QCELEEQRERARK-HFKVEAKKVKPVYSHLKELGKTSAFVGYEHMEW------------- 460

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S V  +V+   +V E   G++ EVV  +TPFY E GGQ+GD G    D 
Sbjct: 461 ----------ESQVVGLVKGEGLVSELKEGEEGEVVLKETPFYPEGGGQIGDAGIIESDK 510

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D QK  EGI VH   V +G L+   ++   +D + R  +  NH+ATHLLH AL 
Sbjct: 511 ALFKVEDTQKPTEGIIVHIGKVLKGTLKVGDTVHARVDKERRWDIMRNHTATHLLHAALR 570

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +    LRFD TH   +T  ELK +E+ VN+ I +NLPV    M  ++
Sbjct: 571 NVLGEHVRQAGSLVADKYLRFDFTHFSALTEEELKRVEELVNEKIRENLPVNVMEMAYDE 630

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ +GA A+   KY +RVRV+S      G  S  LCGGTHVS+TG+I    I+SESS+ A
Sbjct: 631 ALKTGAIAIFEEKYGERVRVISC-----GEFSKELCGGTHVSATGDIGYFKIISESSVGA 685

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRI A TG+ +      + + LK  +S L V +  V+ ++EE+ EE +  +    + K
Sbjct: 686 GVRRIVAQTGRWSVETAFKEHQTLKKASSALGVGEEEVIQKIEELKEEIKDREREIQRLK 745

Query: 779 LQLNVEDL----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            +L    +        + D      +  EV+ +EL+++ D L+++ +  ++ +     + 
Sbjct: 746 QELLKLQIREVVKEENVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVVFIASRKGD- 804

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K + +I V++++ D+ NA ++ R   KVL GGG GGR  +AQ GG   +K  +A+  +  
Sbjct: 805 KINFVIGVSKEISDKVNAKEVIREVGKVLKGGG-GGRADLAQGGGKAPDKFPEAVKLLKE 863

Query: 895 FL 896
            L
Sbjct: 864 IL 865


>gi|71275909|ref|ZP_00652192.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Dixon]
 gi|71899253|ref|ZP_00681415.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Ann-1]
 gi|170729338|ref|YP_001774771.1| alanyl-tRNA synthetase [Xylella fastidiosa M12]
 gi|205830290|sp|B0U1K9|SYA_XYLFM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71163286|gb|EAO13005.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Dixon]
 gi|71730986|gb|EAO33055.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Ann-1]
 gi|167964131|gb|ACA11141.1| Alanine--tRNA ligase [Xylella fastidiosa M12]
          Length = 884

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/910 (40%), Positives = 537/910 (59%), Gaps = 50/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK     V 
Sbjct: 8   TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT  ++L  
Sbjct: 68  DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+E++ LW+ + G+  D+I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYRTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I  G      E+G+R+IEIWNLVFMQF++Q+      LP   +DTGMGLER+A
Sbjct: 188 FYDHGEHIPGGPPGSPGEDGDRFIEIWNLVFMQFDRQSDGTLVPLPTPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  + ++T +    N   +  VI DH R+ +FLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNK--SLCVIADHSRACAFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P   +++P L   MG AYP+L  A   +  TL +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMR-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+ +QR  ARA       G   ++          T F+GY+ L+          
Sbjct: 424 MAGFEAAMTQQRKTARAAGKF---GRGVQLSAERAAMLSPTVFLGYEQLQADGL------ 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G + + A  G +V V+ D+TPFYAE+GGQ+GD G  
Sbjct: 475 ----------------RVVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVE-RGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           +            +K  G F  H     +G ++    L  ++    R+ +++NHSATHLL
Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVTRIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL ++ G+HV+Q GS + PD LRFD +H +PI++A++  IE  VND +  N  V+   
Sbjct: 579 HCALRSVFGTHVAQKGSLVAPDRLRFDFSHFEPISAAQMTLIERMVNDEVRANHLVMIEQ 638

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A+ +GA AL G KY + VRVV +        S  LCGGTH++ TG+I L  I+SE
Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVKMG------TSVELCGGTHITRTGDIGLFKIISE 692

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  +VV  + ++ +  + L+  
Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 752

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L    +     +   +ADV  ++  +  +D K L+  +D L+ ++   +I+L 
Sbjct: 753 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG +G     A
Sbjct: 813 GVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGEDGPSLRSA 871

Query: 889 IAGVASFLKK 898
           + GVA+++K+
Sbjct: 872 LDGVATWVKQ 881


>gi|157273379|gb|ABV27278.1| alanyl-tRNA synthetase [Candidatus Chloracidobacterium
           thermophilum]
          Length = 880

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/907 (39%), Positives = 518/907 (57%), Gaps = 44/907 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  FL++F ++GH ++ SS ++P +D TL+FTN+GM  FK++FTG+E   Y  
Sbjct: 1   MLTGHDIRRRFLDYFARHGHRIVKSSPVLPPDD-TLLFTNAGMNQFKDVFTGRETREYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKC+RAGGKHNDLD VG+T RHHTFFEMLGNFSFG YFKE AI  AW+LL +EF L
Sbjct: 60  AASSQKCIRAGGKHNDLDEVGKTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLLREFGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL+ TVY++D+EAF LWKK  G  AD+I+R    +NFW M ETGPCGPCSEI +  G
Sbjct: 120 PLERLWFTVYEDDDEAFALWKK-VGAPADRILRFGKKENFWQMGETGPCGPCSEIHYFLG 178

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + +    P   +  G+  IEIWNLVFMQFE+        LPK S+DTG GLER+A+VLQ 
Sbjct: 179 DDLADNRPEHVNGPGDTTIEIWNLVFMQFERFADGTLKPLPKPSVDTGAGLERLASVLQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K +NYD DL   +++      G  Y     + V+ R+I DH R+++F IADGI P N GR
Sbjct: 239 KKSNYDTDLIFPIVEHIAARAGKPYHYDSPDGVSMRIIADHARATAFSIADGIYPGNTGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
            YVLR+IMRRA+ + R LG     +  +   +   M +A+PEL     +I   + +E++ 
Sbjct: 299 NYVLRKIMRRAIWHGRRLGIENLFLHDITAFVVAHMAAAFPELQTQAEVITRVVTTEEKL 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL  G   L+          +++G  AF LY T+GLPLD++   +  +    +D   
Sbjct: 359 FSATLAAGRKRLEEAFRRAE-HGVVSGADAFDLYQTYGLPLDLIA-YIAEQRGLRVDEAG 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  AL E+R RAR    G  +      + +  +    T F GYD L              
Sbjct: 417 FEAALTEERIRARESWKGGTAKAVAPAYQAALD-GRPTIFRGYDHLSLPDL--------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         V+A+++QGE+VE   +G+  EV+ D+TPFYAEAGGQ+GDTG    +
Sbjct: 467 -------------RVRALIRQGELVEVLRAGEDGEVILDETPFYAEAGGQVGDTGLLENE 513

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++TD      G+ VH   V RG +RT   +  T+D   RR+  +NHSATHLLH AL
Sbjct: 514 AVTMRVTDTVAPVTGLIVHCVKVLRGAVRTHDRVTATVDADRRRRTMLNHSATHLLHAAL 573

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS + PD LRFD TH   +++ E+  +E  VN  I +N P+  R M  +
Sbjct: 574 REVLGAHVKQAGSEVAPDKLRFDFTHYAALSADEIAEVERLVNAQIRRNAPLAKREMPLD 633

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            AIA+GA AL G KY D VRVV V        S  LCGGTHV++TG+I L  I+SESSI 
Sbjct: 634 AAIAAGAIALFGEKYGDVVRVVEVPG-----FSIELCGGTHVTATGDIGLFKIISESSIA 688

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASF--LKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           AG+RRI A+TG+ A       +  L +LA+   L      +  +VE++    R+ +    
Sbjct: 689 AGVRRIIAVTGEAAFERFQADEAILSNLAATFRLGGEVSEIPAQVEKLQASLRQAEREIE 748

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             +L+L  +           I DV  ++  ++E+D   ++ + + L  K+   ++++ G+
Sbjct: 749 SLRLKLAQQRAETALAEARTIGDVRVLALEVTELDKSGVRQLAEYLLGKLGQAVVVV-GL 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             E+K S+ + V + L +R  A  L R  A ++ GG GGGR   A++GG +  +  +A+ 
Sbjct: 808 RSEEKVSLAVRVADPLTNRLQANRLVRELAAMV-GGSGGGRADYAEAGGKDPARLPEALH 866

Query: 891 GVASFLK 897
              + ++
Sbjct: 867 ATPAIVE 873


>gi|91204886|ref|YP_537241.1| alanyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|122426110|sp|Q1RKG2|SYA_RICBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91068430|gb|ABE04152.1| Alanyl-tRNA synthetase [Rickettsia bellii RML369-C]
          Length = 877

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/901 (46%), Positives = 564/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR+ F+ +F+ N H  + SS LIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEIRSKFISYFKANNHTHVSSSPLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYDKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY TVY  D+EA   WKKI+G S D+IIRI TNDNFWSM + GPCGPCSEIF+D GE 
Sbjct: 125 DKLYATVYHTDDEAASYWKKIAGFSDDRIIRIKTNDNFWSMGDLGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ NK  R  LPK SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQINKDTRIDLPKKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K E     ++RVI DHLR+ SFLIADG++P++EGRGYVL
Sbjct: 245 NNYDIDLFQEIISFTENILKVKVEAEAKFSYRVIADHLRACSFLIADGVVPSSEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRAM +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRAMRHAHILGSKEPLMYKLLPKLVDLMGNTYPELKRAESFISSILEQEEIRFKTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL     +L     L+G+VAFKLYDT+G PLD+ +DIL  R    +D   F Q 
Sbjct: 365 LERGLKLLSEETENLNAGGRLSGEVAFKLYDTYGFPLDLTEDILKNRN-IAVDHQGFEQQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQ+  AR   LG G   T+++WF +K KYG+T+F+GY+L                   
Sbjct: 424 MLEQKECARKSWLGSGESKTDQLWFDIKAKYGSTEFLGYNL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEADGKIVALIKDNALVNDISEIDTQFLLIANQTPFYGESGGQMGDIGVIKTQNCE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  ++++G + T+ +   +ID + R+ L I+HSATHLLH  L  I
Sbjct: 521 IEVIDTLKYLGFIIVHKCVLKKGKVITDENANFSIDVKYRQNLRIHHSATHLLHAVLHQI 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +    LRFD++H K +T  E+  IED VN+II  N  V T +M+ EDA+
Sbjct: 581 LGKHVTQKGSLVATSYLRFDISHPKALTPEEIVLIEDKVNEIIRDNHEVDTTLMSTEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AGI
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRHTGDIGCFKITSESAIAAGI 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  ++  LK++ + LK ++  +V +V  I E  ++L+    K    
Sbjct: 696 RRIEAVCGEFVIKLIREKEGLLKNIENSLKTNKNELVSKVNNILERNKELEKELEKTYLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    KI ++  +   +  +D+K L+   + L KK++  +++ VG +   K
Sbjct: 756 SLDLSVEQIEKQAEKIKEIKLIYCHVENLDNKILRQAAENLTKKVEDLVVVYVG-NNSSK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + ++  + D+FNA  +A+  +  LGG GGGG+P +AQ+GG +  K  +    + S 
Sbjct: 815 LSITVGISRAITDKFNAGFIAKELSLFLGGSGGGGQPSIAQAGGSDLAKLPKVKDQLQSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|270157134|ref|ZP_06185791.1| alanyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|289164461|ref|YP_003454599.1| alanyl-tRNA synthetase [Legionella longbeachae NSW150]
 gi|269989159|gb|EEZ95413.1| alanyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|288857634|emb|CBJ11474.1| alanyl-tRNA synthetase [Legionella longbeachae NSW150]
          Length = 860

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/903 (41%), Positives = 535/903 (59%), Gaps = 52/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  F ++F K+GH+L+ SSSLIP NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MKSSEIRQAFFDYFTKHGHQLVESSSLIPANDPTLLFTNAGMVQFKDVFLGVEARSYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT+   L 
Sbjct: 61  VTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTQVMRLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-G 180
           + RL++TVY ED+EA  +W K   +SA +  R    DNFWSM +TGPCGPC+EIF+D   
Sbjct: 121 EERLWVTVYKEDQEAEDIWLKEMKVSAARFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E   G      E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A V+Q  
Sbjct: 181 EIPGGPPGSPDEDGDRYIEIWNLVFMQFNRDKEGHLHPLPKPSVDTGMGLERLAAVVQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID F++LIQ+  ++  +     N+ + +VI DH+RSS+FLIADG++P NEGRGYV
Sbjct: 241 HSNYEIDTFQYLIQSIAKLGEVTD--LNLTSLKVIADHIRSSAFLIADGVIPGNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG   P   HL+ +L T MG AYPELIQ+K  IE  L  E+ +F +
Sbjct: 299 LRRIIRRAIRHGNKLGLPTPFFSHLVESLITVMGDAYPELIQSKSHIERVLNQEENQFAR 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++GL LL   +  LG  EI +G +AFKLYDT+G P+D+  DI   +GL  +D+  FNQ
Sbjct: 359 TLEQGLRLLQEQMHSLGGHEI-SGQIAFKLYDTYGFPIDLTADIAREQGLF-VDMNGFNQ 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +++QR +++A S           + +  +    + F GY+                   
Sbjct: 417 LMQQQREQSQAASQF------SVDYNANTQLDYQSDFHGYEKKE---------------- 454

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                  V + + A++Q G  V+    G K  VV D TPFYAE+GGQ+GD G       R
Sbjct: 455 -------VEAKIIALLQDGMEVQVLNQGMKGAVVLDHTPFYAESGGQVGDKGMLTSTNFR 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D QKK     VH+  +  G    +  +   ID + R  + +NH+ATHLLH AL  +
Sbjct: 508 FRVDDTQKKG-QAIVHYGEMLDGTATLKQFVHAQIDNERREAIRLNHTATHLLHAALKAV 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           +G  V Q GS +  +  RFD +H + +T+ +++ IE  VN+ +  N  VVTR+M+ E A 
Sbjct: 567 VGPQVQQKGSLVDAERARFDFSHFESLTAEQIQEIECLVNEQVRANNEVVTRLMDIESAK 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA AL G KY D VRV+S+     G  S  LCGGTH   TG+I L  I++E  I +GI
Sbjct: 627 KSGAVALFGEKYADEVRVLSM-----GEFSKELCGGTHARRTGDIGLFKIIAEYGIASGI 681

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--- 777
           RRIE +TG+ A + +  Q   L  LAS LK +  N+  +V ++  E + ++   AK    
Sbjct: 682 RRIEMVTGRYALAWVNEQQALLNELASSLKTTATNLSDKVGQLLAENKSMEKEIAKLQTE 741

Query: 778 KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           K+Q +  DL     K+  ++ +   +  VD++ L++ +D L+ +++S +I+L  + +  K
Sbjct: 742 KVQKSGADLANEVEKVNGISLLIKQLEGVDNQTLRTTLDQLKSRLESAVIVLFTLEQN-K 800

Query: 836 ASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +V+  V++ +L +   A  L R        G GGGR  MAQ GG      +  +  +  
Sbjct: 801 MNVIAGVSKSILGKVPAAATLVRHLC-----GKGGGRDDMAQGGGEVPADFESRLKEIKE 855

Query: 895 FLK 897
            ++
Sbjct: 856 MVR 858


>gi|310643515|ref|YP_003948273.1| alanyl-tRNA synthetase [Paenibacillus polymyxa SC2]
 gi|309248465|gb|ADO58032.1| Alanyl-tRNA synthetase [Paenibacillus polymyxa SC2]
          Length = 877

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/911 (38%), Positives = 511/911 (56%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF+  GH + PS+ L+P  DP+L++ N+GM P K  F G+ KP    +
Sbjct: 1   MKASEIRSKWLEFFESKGHVIEPSAPLVPHKDPSLLWINAGMAPLKPYFDGRVKPENPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K   
Sbjct: 61  ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDPKWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  RL +TVY EDEEA+KLW +  GL A++II++   DNFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPERLAVTVYPEDEEAYKLWNEKVGLPAERIIKL--EDNFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           GE               E ERY+E+WNLVF QF          LP  +IDTG GLER A+
Sbjct: 174 GEAYGSDMTDPEMYPGGENERYLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFAS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   +N+D D+F+ LIQ +  + G+KY  N  + V  +VI DH+R+ +F I DG+LP+
Sbjct: 234 ILQNVDSNFDTDIFQPLIQKTAAMAGVKYNDNVDSDVALKVIADHVRTVTFAIGDGVLPS 293

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ Y ++LG   P M  L+  +   MG  YPE++  +  I + +++
Sbjct: 294 NEGRGYVIRRLLRRAVRYGKMLGMNRPFMFELVETVGDIMGVYYPEVVDKRDFIIKVIKT 353

Query: 354 EDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  +   +      +++G  AFKLYDT+G P D+ +D    +GL 
Sbjct: 354 EEERFHETLTDGLAILADISAQAKAEGRNVISGADAFKLYDTYGFPFDLTEDYADEQGLK 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F++A++EQR RAR       S   +    +L +    + F+GY+ L        
Sbjct: 414 -VDREGFDEAMQEQRQRARDAHQDNASMKIQG--GALSDLAVKSDFVGYNDL-------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S + AIV    +VE    GQ  +VV D TPFYAE+GGQ+ D 
Sbjct: 463 ---------------VTESKIVAIVYDDMLVESVSEGQSCQVVLDVTPFYAESGGQVSDH 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G  +  ++  + K  +G  VH  +VE G L    ++   +D  +R ++  NH+ATH
Sbjct: 508 GLLRGGTVTAKVEGLFKAPQGQHVHQVVVEAGELNVGDTVKAEVDQASRGEIEKNHTATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN  I   L V  
Sbjct: 568 LLHKALKEVLGDHVNQAGSLVEPGRLRFDFSHFGSITPEELADIELRVNRAIWSQLNVTI 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +   ++A A GA AL G KY D VRVV V     G +S  LCGG HVS+T +I L  +V
Sbjct: 628 ELKPIDEAKALGAMALFGEKYGDIVRVVKV-----GDYSIELCGGCHVSNTSQIGLFKLV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG+    ++ GQ E LK  A  +K     V  R+E + ++ + L 
Sbjct: 683 SESGIGSGVRRIEAVTGRFGFEYMEGQLELLKVSAGLVKSKLSEVPKRIESLQQQIKDLS 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   + +L+  +         +   V  ++  +       L+++ D L+ K+ + ++ 
Sbjct: 743 RENESLQSKLSAIEAGQLTDQVVQAGGVQLLAARVQASSMDALRAIADELKSKLPAAVLA 802

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G + + K + ++VV  +      +A  L +  A V GGGG GGRP MAQ+GG + +K 
Sbjct: 803 L-GAAMDDKVNFVVVVPAEHTKTGLHAGKLVKEIAAVCGGGG-GGRPDMAQAGGKDASKL 860

Query: 886 DQAIAGVASFL 896
           D+A+      +
Sbjct: 861 DEALQRAHELV 871


>gi|308070327|ref|YP_003871932.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) [Paenibacillus
           polymyxa E681]
 gi|305859606|gb|ADM71394.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) [Paenibacillus
           polymyxa E681]
          Length = 877

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/911 (38%), Positives = 514/911 (56%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF+  GH + PS+ L+P  DP+L++ N+GM P K  F G+ KP    +
Sbjct: 1   MKASEIRSKWLEFFESKGHVIEPSAPLVPHKDPSLLWINAGMAPLKPYFDGRVKPENPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K   
Sbjct: 61  ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDPKWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  RL +TVY EDEEA+KLW +  GL A++II++   DNFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPERLAVTVYPEDEEAYKLWNEKVGLPAERIIKL--EDNFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           GE               E ERY+E+WNLVF QF          LP  +IDTG GLER A+
Sbjct: 174 GEAYGSDMTDPEMYPGGENERYLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFAS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   +N+D D+F+ LIQ +  + G+KY  N  + V  +VI DH+R+ +F I DG+LP+
Sbjct: 234 ILQNVDSNFDTDIFQPLIQKTAAMAGVKYNENVDSDVALKVIADHVRTVAFAIGDGVLPS 293

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ Y ++LG   P M  L+  +   MG  YPE++  +  I + +++
Sbjct: 294 NEGRGYVIRRLLRRAVRYGKMLGMNRPYMFELVETVGDVMGVYYPEVVDKRDFIIKVIKT 353

Query: 354 EDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  +   +      +++G  AFKLYDT+G P D+ +D    +GL 
Sbjct: 354 EEERFHETLTDGLAILSDISAQAKAEGRNVISGADAFKLYDTYGFPFDLTEDYADEQGLK 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F++A++EQR RAR       S   +    +L +    ++F+GY+ L        
Sbjct: 414 -VDREGFDEAMQEQRKRARDAHQDSASMKIQG--GALSDLAVKSEFVGYNDL-------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S + AIV +  +V+    GQ  +VV D TPFYAE+GGQ+ D 
Sbjct: 463 ---------------VTESKIVAIVYEDVLVDSVSEGQSCQVVLDVTPFYAESGGQVSDH 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G  +  ++  + K  +G  VH  +VE G L    ++   +D  +R ++  NH+ATH
Sbjct: 508 GLLRGGTVTAKVEGLFKAPQGQHVHQVVVEAGELNVGDTVKAEVDQASRGEIEKNHTATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN  I   L V  
Sbjct: 568 LLHKALKEVLGDHVNQAGSLVEPGRLRFDFSHFGSITPEELADIELRVNRAIWSQLDVNI 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +   ++A A GA AL G KY D VRVV V     G +S  LCGG HVS+T +I L  +V
Sbjct: 628 ELKPIDEAKALGAMALFGEKYGDIVRVVKV-----GDYSIELCGGCHVSNTSQIGLFKLV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG+    ++ GQ E LK  A  +K     V  R+E + ++ + L 
Sbjct: 683 SESGIGSGVRRIEAVTGRFGFEYMEGQLELLKVSAGLVKSKLSEVPKRIESLQQQIKDLS 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   + +L+V +         +   V  ++  +       L+++ D L+ K+ + +++
Sbjct: 743 RENESLQSKLSVIEAGQLTDQVVQAGGVQLLAARVQASSMDALRAIADELKGKLPAAVLV 802

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G + + K + ++ V  +      +A  L +  A V GGGG GGRP MAQ+GG + +K 
Sbjct: 803 L-GAAMDDKVNFVVAVPAEYTKAGLHAGKLVKEIAAVCGGGG-GGRPDMAQAGGKDASKL 860

Query: 886 DQAIAGVASFL 896
           D+A+      +
Sbjct: 861 DEALQRAHELV 871


>gi|258541879|ref|YP_003187312.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256632957|dbj|BAH98932.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636014|dbj|BAI01983.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639069|dbj|BAI05031.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642123|dbj|BAI08078.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645178|dbj|BAI11126.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648233|dbj|BAI14174.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651286|dbj|BAI17220.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654277|dbj|BAI20204.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12]
          Length = 881

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/903 (47%), Positives = 575/903 (63%), Gaps = 31/903 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IRT FLE+F  NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE   Y  
Sbjct: 1   MLTTNEIRTAFLEYFASNGHQIVPSSSLVPKNDPTLLFTNAGMVQFKNVFTGQETRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI+ AW+L+TK F+L
Sbjct: 61  ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWNLVTKGFNL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TV+ EDE+A  LW+ I+GL   +IIRI T+DNFW M +TGPCGPCSEIFFD  
Sbjct: 121 PKDKLLVTVFAEDEDAAGLWRSIAGLDDSRIIRIPTSDNFWRMGDTGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +   G      E+G+R++EIWNLVFMQ+ +     R  LP+ SIDTG+GLER A ++Q 
Sbjct: 181 PDVPGGPPGSPDEDGDRFVEIWNLVFMQYFEDPPGTRSPLPRPSIDTGLGLERFAAIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D F  LIQAS  +T    +G    +HRV+ DHLRS++FLIADG+LP+ +GRGY
Sbjct: 241 KRDNYDTDTFVALIQASADLTHQAVDGPFKASHRVVADHLRSTAFLIADGVLPSKDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  ++G TEP    LLPAL  +MG AYPEL+  + LI ET+R E+ERF 
Sbjct: 301 VLRRIMRRAMRHLHMMGTTEPTFYKLLPALIQQMGGAYPELVHGEALIRETMRGEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL LL+   SHL     L GDVAF+LYDT G PLD+ QD L   G   +D+  F 
Sbjct: 361 AMLDRGLHLLEEEKSHLASGASLPGDVAFRLYDTFGFPLDLTQDALRGSGH-DVDVKGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+  QR RARA   G G    E IWF  ++K+GA++F+GY                   
Sbjct: 420 EAMAVQRQRARAAWTGSGDTAVETIWFEARDKFGASEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V+A++   E ++EA  G +V V+ +QTPFY E+GGQ GDTG     G+
Sbjct: 461 ----STEQADGEVQAVIAGNEFLKEAPVGSEVAVLLNQTPFYGESGGQAGDTGFLTASGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ +TD QKKA  + VH+  V  G LR  M++  T+D+  R  +  +HSATHLLH AL  
Sbjct: 517 KVAVTDTQKKAGDLIVHYGTVTEGTLRPGMAVTATVDHDRRSAIRAHHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS  T + LRFDV+  +PIT  EL +IE  VN+ I  N  VVTR M  ++A
Sbjct: 577 HLGAHVAQKGSLNTAERLRFDVSQPRPITDEELAAIEAEVNNRIRDNSQVVTRSMTPDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           IA GA AL G KY D VRVVS+          S  LCGGTHV+ TG+I    IVSES + 
Sbjct: 637 IAEGATALFGEKYGDEVRVVSMGAGADNKSPWSMELCGGTHVNRTGDIGQFRIVSESGVS 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+ G+ A+   +  +++L  +A+ +KVS  +   R+  + EE R+++   A  
Sbjct: 697 AGVRRIEAVAGKAAQDLTVSNEQRLTQMAAMMKVSVADAPERLAAVLEERRQMEKQIAHL 756

Query: 778 KLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + QL   +++     KI      +  + E   +ELK + + + K+  + +++L+  + + 
Sbjct: 757 QRQLATGNVAAAGVDKIGAARLATRNVGETPPRELKGLAETILKQGNADVVVLISTA-DG 815

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K SV+  V  +++++ +AV L R ++  +GG GGGGR  MAQ+GGP+   AD A A V  
Sbjct: 816 KGSVVAAVGPEMVEKVDAVALVRAASAAMGGKGGGGRRDMAQAGGPDAQAADTAFAAVRE 875

Query: 895 FLK 897
            LK
Sbjct: 876 ALK 878


>gi|224369825|ref|YP_002603989.1| alanyl-tRNA synthetase [Desulfobacterium autotrophicum HRM2]
 gi|223692542|gb|ACN15825.1| AlaS1 [Desulfobacterium autotrophicum HRM2]
          Length = 872

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/902 (41%), Positives = 542/902 (60%), Gaps = 45/902 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +  R  F+E+F+K+ H  + SSSL+P +DPTL+FTN+GMV FK +FTG EK  Y   
Sbjct: 1   MTGNEARRLFIEYFEKHHHHHVRSSSLVPSDDPTLLFTNAGMVQFKRVFTGDEKRDYSLA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI+ AWDLLT  +  D
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGQYFKDKAIEFAWDLLTNGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+++VY +D+EA+ +W+   G+   +I+R+   DNFWSM +TGPCGPCSEI  D+GE
Sbjct: 121 PEKLWVSVYLDDDEAYNIWRDKIGVPESRIVRLGEKDNFWSMGDTGPCGPCSEIHIDRGE 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      E +RY+E+WNLVFMQF++    +   LPK SIDTG+GLER+ +VLQ+
Sbjct: 181 KYGCGSPDCAVGCECDRYLELWNLVFMQFDRDATGKMTPLPKPSIDTGLGLERVISVLQD 240

Query: 240 KTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              NY+ DLF  +++  E ++         N V  +VI DH R+++FLI DGILP+NEGR
Sbjct: 241 VPTNYETDLFLPIMERVEVLSGLKKDASRENSVAMKVIADHSRAAAFLICDGILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA+ Y R LG   P +   +  +   M  AYPEL ++   I   +++E+ +
Sbjct: 301 GYVLRRIMRRAIRYGRNLGLVRPFLHETVQQVFEIMEQAYPELKESSAFILNVVKNEEAK 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD GL LL+  +        + + GDV FKLYDT G P+DI+ D++  R +  +D+
Sbjct: 361 FSETLDVGLRLLNETIEKTEASGAKQIAGDVIFKLYDTFGFPVDIINDVVADRAIT-LDM 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +N+A+++QR+R+++  +  G G   + + +L  +   T+F GY  L            
Sbjct: 420 DGYNRAMDDQRARSKSSKIFAGVG---EAYKTLTSQGVKTEFTGYTDLE----------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        +S V  IV+    V  A  G ++E+V   TPFYAE+GGQ GD+G   
Sbjct: 466 ------------TTSEVLLIVKNDVAVTTAGQGDQIEIVTRATPFYAESGGQAGDSGVIK 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G  + + +      G+ +HH  V  G L+T+ ++++ +D + R   ++NH+ATHLLH 
Sbjct: 514 TKGCTVAVDNTLADPSGLRIHHGKVVSGALQTKANVLMVVDQEQRAATAMNHTATHLLHA 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q+GS +T D LRFD TH   IT  E++++E  VN  I +N+PV T  M+
Sbjct: 574 ALRKVLGDHVKQSGSLVTKDRLRFDFTHFAAITRQEIEAVESEVNLRIRENVPVATIEMD 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A+ SGA AL   KY DRVRVVS+        S  LCGGTH   +G I L  IVSE  
Sbjct: 634 MDEAVKSGATALFEEKYGDRVRVVSMAG-----FSKELCGGTHTDRSGNIGLFQIVSEGG 688

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +GIRRIEA+TG RA  ++ G    +   +  LK ++G VV +V+ +  + +       
Sbjct: 689 IASGIRRIEALTGARALDYVHGITADILETSRVLKSARGEVVEKVKTLVADKKAADKEIV 748

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K ++  + +        +I  V  +S ++   +  +L+ + D  + KI SG+++L G 
Sbjct: 749 SLKAKIASKSVENMDDDIREIDGVRIVSKLVQIDNPSQLRDLADKFKAKIGSGVVLL-GA 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               KA ++ VV++DL  RF A  + + +A ++GGGG GGRP MAQ+GG      ++A+A
Sbjct: 808 ESNGKALLVSVVSDDLTKRFKAGAIVKKAAAIVGGGG-GGRPDMAQAGGSKPEFLERALA 866

Query: 891 GV 892
            V
Sbjct: 867 SV 868


>gi|325290063|ref|YP_004266244.1| alanyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965464|gb|ADY56243.1| alanyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 875

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/908 (37%), Positives = 520/908 (57%), Gaps = 48/908 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL FFQ+ GH L  S+SLIP NDPTL+ T +GMVPFK  F  Q +P +  
Sbjct: 1   MYTGDQLREMFLNFFQEKGHRLQASASLIPKNDPTLLLTVAGMVPFKPYFMRQVEPPFPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR      DL+ VG+T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L
Sbjct: 61  ATTCQKCVRT----PDLERVGKTARHHTFFEMLGNFSFGDYFKEEAITWAWEYVTEVIKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L+ITV+ ED EA ++W   +G+S D++  +   +NFW+    GPCGPCSEI+ D G
Sbjct: 117 PADQLWITVHPEDHEAREIWINKAGVSPDRL--LDDEENFWAAGPVGPCGPCSEIYVDLG 174

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +R++EIWNLVFMQ+ +        LP+ +IDTGMGLER+ +V+Q
Sbjct: 175 EARGCGKPDCAIGCDCDRFLEIWNLVFMQYTRDESGTLTPLPRQNIDTGMGLERITSVMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF  +I    ++ G+ Y  +       +VI DH R+ +F++ DGI P+++G
Sbjct: 235 GVVSNFDTDLFIPIINKIAEIAGINYKDDPKKDTALKVISDHTRAIAFMLGDGIRPSSDG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ YARL+G  +P +  +   + ++   AYPEL + +  I   L+ E++
Sbjct: 295 RGYVLRRILRRAVRYARLIGIEKPFLEQIFAVIQSKYAHAYPELKENENFILNHLKLEEK 354

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TL++G  +L   +  L K  +  +NG  AF LY+T+G P+++ ++IL   G+  +D
Sbjct: 355 NFQATLEQGTQILQDKVESLKKQGLQEINGTDAFHLYETYGFPVELTEEILAEEGIT-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + ++  A EE R  A+  S  + S        +   + G T+F+GY  L    F      
Sbjct: 414 MENYQLAFEEHRKAAKEQSRQMVSSAENMALINKARELGKTEFVGYRQLSTETF------ 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+    E V  A  G++V  +  +TPFYAE+GGQ+ D G  
Sbjct: 468 -----------------VAALFSGEEEVASAGEGEEVLCLLPRTPFYAESGGQVADKGWI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    Q+ +V+K  +G F H   +  G+L+ + ++V  +D + R+ ++ +HS+THLLH
Sbjct: 511 RSERAEAQVMEVRKLPDGSFCHRLRITSGVLKVQDTVVAEVDGEIRKSIAAHHSSTHLLH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS ++ + LRFD +H   +++ EL ++E+ +N  I   L V    M
Sbjct: 571 TALRKVLGQHVQQAGSLVSEERLRFDFSHFSAMSTEELNTVEEEINRQIRGALSVNIAEM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             EDA A GA AL G KY D VRVV +     G  S+ LCGGTHV +TGEI ++ I+SES
Sbjct: 631 CMEDAKAQGAIALFGEKYGDEVRVVRM-----GEFSTELCGGTHVQNTGEIGIVKILSES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+ G++A +++   +E L+ +A  LK + G  + +  ++  + +  +   
Sbjct: 686 GIGAGLRRIEAVAGKQALAYIHSLEESLEEIAVILKAAPGESLKKAGQMAGQLKDAEREI 745

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K   +L+  +         +I  V  ++  +   D   L+ + D L+ +++ G+I+L G
Sbjct: 746 EKLNARLSKYEAENILDKVQEIQGVKVLAAKVQAPDMDALRKMSDTLKDRLKEGVIIL-G 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S E K   + VV+   L+  +A  + +  A    GG GGGRP MAQ+GG + +K ++A+
Sbjct: 805 ASAEGKVHFVSVVSPSGLNGLHAGKIIKEVAA-FTGGSGGGRPDMAQAGGKDPSKIEEAL 863

Query: 890 AGVASFLK 897
           A V + +K
Sbjct: 864 AKVPAIIK 871


>gi|119713374|gb|ABL97437.1| alanine-tRNA ligase [uncultured marine bacterium EB80_69G07]
          Length = 888

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/912 (44%), Positives = 595/912 (65%), Gaps = 44/912 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +++ IR+TFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKN+FTG EK  YQ  
Sbjct: 4   KSLNEIRSTFLKYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYQRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKER I+LAW+L+TK+F LD
Sbjct: 64  TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKERGIELAWNLITKDFGLD 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TV+ ED+EAF  WKKI+G S D+IIRI+T+DNFWSM ETGPCGPCSEIF+D G+
Sbjct: 124 KNRLYVTVFHEDDEAFNFWKKIAGFSDDRIIRISTSDNFWSMGETGPCGPCSEIFYDHGD 183

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GGLPG+  ++G+R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLER+A +LQ  
Sbjct: 184 HLKGGLPGTKDQDGDRFIEIWNLVFMQYEQVSKDKRIDLPKPSVDTGMGLERIAALLQGT 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY  D FK LI +   VT +K   NNI + RVI DHLR+SSFL+A+G+LP+NEGRGYV
Sbjct: 244 HDNYQTDHFKKLISSISDVTKVKQADNNISSFRVIADHLRASSFLLAEGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRR M ++ LLG  EP+   +  +L  EM   YPEL ++K LI+ETL+ E+E+F  
Sbjct: 304 LRRIMRRGMRHSHLLGSKEPIFYKIFESLKNEMSGNYPELERSKSLIKETLKMEEEKFLV 363

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            LDRG+ +L+  +S +  D++L+GDVAFKLYDT+G PLD+ +DIL  + L  +D   F++
Sbjct: 364 LLDRGIKILNDEISKI--DKVLSGDVAFKLYDTYGFPLDLTEDILKNKSLK-VDHQKFDE 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +++ +  A+ +  G G  + E IWF +K+K G T+F+GY+                   
Sbjct: 421 LMKKSKELAKKNWKGSGDSSEEAIWFLIKDKTGPTEFLGYE------------------- 461

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               +N    +V  +++  +  +   +G++  ++ +QTPFY E+GGQLGD G  +     
Sbjct: 462 ----SNQSEGVVLNLIKNNQESKSLATGEEGMIITNQTPFYGESGGQLGDKGTIVSGNSV 517

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D QKK   +FVH+  V+ G ++    + + ID + R  L   HSATHLLH +L   
Sbjct: 518 FEVEDTQKKLGDLFVHYGSVKTGEIKINDVVEMKIDVERRNNLKAYHSATHLLHESLRRT 577

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS + PD LRFD +H KPIT+ EL++I+  VN+ +     V TRIM  + AI
Sbjct: 578 LGKHVMQKGSLVAPDRLRFDFSHMKPITNEELETIDKLVNEYVKNGSEVTTRIMTPKAAI 637

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA A  G KY + VRVVS+  E     S+ LCGGTHV +TG+I     +S+SSI AG+
Sbjct: 638 EKGALAFFGEKYGEEVRVVSMGKEKDAYFSTELCGGTHVKNTGDIGKFKTISQSSIAAGV 697

Query: 721 RRIEAITGQRARSHLMGQDEK----LKSLASFLKVSQGNVVG-----RVEE--IWEEYRK 769
           RR+EA+  ++    +  +++     ++     +K     ++      +V+   + E  + 
Sbjct: 698 RRVEALRDKQLEDFIKNKEKLSTLSVQKDEETIKDLSSQIIKLGGKPKVDNKDLKEIIKN 757

Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L     +  +   ++D     ++  KI D+      + ++  K+L+ ++D+ +K++  GI
Sbjct: 758 LSKQLEQLNVNSVLQDKTKNIINDQKIKDIKVRFQKVQDLPPKDLRKLVDSGKKELGDGI 817

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +++   S E K  + + +TE L+D+++AV  A+L ++++GG GGGGR   AQ+GG + +K
Sbjct: 818 VIVFASS-EDKVGLGVGITEKLVDKYDAVKFAKLGSEIIGGKGGGGRKDFAQAGGQDKDK 876

Query: 885 ADQAIAGVASFL 896
            D+A   + + +
Sbjct: 877 IDEAFEKLKALI 888


>gi|205830249|sp|A5UY81|SYA_ROSS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 905

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/932 (40%), Positives = 539/932 (57%), Gaps = 69/932 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + ++IR  FL FF++ GH  +PSSSLIP NDPTL+FTNSGMV FK+ F G E+  Y
Sbjct: 1   MKKLSSAAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              TTVQKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI +AW+LLTK F
Sbjct: 61  TRATTVQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKSEAIPMAWELLTKVF 120

Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +L   RL+ TV++       D+EA +LW   +G   D+++R    DNFW MA+TGPCGPC
Sbjct: 121 ELPVERLWFTVFEGDDEVPPDDEAAQLWVA-AGADPDRVLRFGRKDNFWVMADTGPCGPC 179

Query: 173 SEIFFDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEI    G+ +      G + +   Y+EIWN VFMQFE+        L + S+DTGMGLE
Sbjct: 180 SEITIYIGDDLRAMSAQGVNSDDPNYVEIWNNVFMQFERS---TMQPLHRPSVDTGMGLE 236

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           RMA V+Q   + Y+ DLF  LI+    + G         +  +R + DH R+ +FLIADG
Sbjct: 237 RMAMVMQGVHSTYETDLFIPLIERQLALLGADESTYRARVAPYRAVADHSRAVAFLIADG 296

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LP N GR YVLRRI+RRA+   R +G+ +P +  ++ A+  +MG+ YPEL +    I E
Sbjct: 297 VLPGNTGRSYVLRRILRRAVYQGRTVGFEKPFLAEIVAAVIEQMGAVYPELRERADFILE 356

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           T+  E+ +F +TL  G+ +L+ V+  +      ++ GD AF L DT+G PLD+ Q I   
Sbjct: 357 TVDLEERQFLRTLSGGMSILNSVIERVRASGSTVIPGDDAFTLKDTYGFPLDLTQKIAAE 416

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D   + + +EEQR R R  +    +   E +W  +      T+F GY       
Sbjct: 417 HGLT-VDEAGYERRMEEQRDRGRRAAQFKRAAEAE-VWAGI--DLPPTRFTGY------- 465

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                S +V+AIV  G+ V EA +GQ+V++  D TPFYAE+GGQ
Sbjct: 466 ----------------AAVSGSGVVQAIVVAGDQVAEASAGQQVQIALDSTPFYAESGGQ 509

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG  IG   R+++ DVQ+   G+ VH+ +VE G +     +   +D   R  +  NH
Sbjct: 510 VGDTGVLIGPRGRVRVEDVQRPVPGVIVHYGVVESGSVMLHDPVDAHVDSGRRAAIMRNH 569

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + PD LRFD TH++P+T  +L  IE  VN  I  + 
Sbjct: 570 TATHLLHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPLTPEQLHEIERRVNAWIRADT 629

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----------------HS 690
           PVV + ++ + AI +GA AL G KY D VR+V++   +G                    S
Sbjct: 630 PVVWQELSYQAAIEAGAIALFGEKYGDVVRMVTIGCVNGHDAPSPAALAERELAGFPMCS 689

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTHV  +GEI L  I+SESS+ AG+RRIEA+TG  A + +  Q   L+++A+ + 
Sbjct: 690 RELCGGTHVGRSGEIGLFRIISESSVAAGVRRIEALTGPEAEAWVDAQIATLQAVAARVG 749

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVD 805
             Q  +V RVE +  E ++ Q    +   ++   +L     S   + D+ F++  +   +
Sbjct: 750 APQTQLVERVEALIAELKQRQRALDELTARMARSNLEGLLASVQSVGDIRFLAAQVEAPN 809

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLG 864
           +  L+ + D L+ K+ SG+++L  +  + KA +L + T DL   R +A +L +  A ++ 
Sbjct: 810 AARLREMGDWLRDKLGSGVVVLATVF-DGKAQILAMATPDLAGKRIHAGNLVKALAPIV- 867

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG GGGRP MAQ+GG +  K  QA+  VA+ +
Sbjct: 868 GGSGGGRPDMAQAGGRDSAKIPQALEHVAAVI 899


>gi|148657329|ref|YP_001277534.1| alanyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|148569439|gb|ABQ91584.1| alanyl-tRNA synthetase [Roseiflexus sp. RS-1]
          Length = 931

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/932 (40%), Positives = 539/932 (57%), Gaps = 69/932 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + ++IR  FL FF++ GH  +PSSSLIP NDPTL+FTNSGMV FK+ F G E+  Y
Sbjct: 27  MKKLSSAAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPY 86

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              TTVQKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI +AW+LLTK F
Sbjct: 87  TRATTVQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKSEAIPMAWELLTKVF 146

Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +L   RL+ TV++       D+EA +LW   +G   D+++R    DNFW MA+TGPCGPC
Sbjct: 147 ELPVERLWFTVFEGDDEVPPDDEAAQLWVA-AGADPDRVLRFGRKDNFWVMADTGPCGPC 205

Query: 173 SEIFFDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEI    G+ +      G + +   Y+EIWN VFMQFE+        L + S+DTGMGLE
Sbjct: 206 SEITIYIGDDLRAMSAQGVNSDDPNYVEIWNNVFMQFERS---TMQPLHRPSVDTGMGLE 262

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           RMA V+Q   + Y+ DLF  LI+    + G         +  +R + DH R+ +FLIADG
Sbjct: 263 RMAMVMQGVHSTYETDLFIPLIERQLALLGADESTYRARVAPYRAVADHSRAVAFLIADG 322

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LP N GR YVLRRI+RRA+   R +G+ +P +  ++ A+  +MG+ YPEL +    I E
Sbjct: 323 VLPGNTGRSYVLRRILRRAVYQGRTVGFEKPFLAEIVAAVIEQMGAVYPELRERADFILE 382

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           T+  E+ +F +TL  G+ +L+ V+  +      ++ GD AF L DT+G PLD+ Q I   
Sbjct: 383 TVDLEERQFLRTLSGGMSILNSVIERVRASGSTVIPGDDAFTLKDTYGFPLDLTQKIAAE 442

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D   + + +EEQR R R  +    +   E +W  +      T+F GY       
Sbjct: 443 HGLT-VDEAGYERRMEEQRDRGRRAAQFKRAAEAE-VWAGI--DLPPTRFTGY------- 491

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                S +V+AIV  G+ V EA +GQ+V++  D TPFYAE+GGQ
Sbjct: 492 ----------------AAVSGSGVVQAIVVAGDQVAEASAGQQVQIALDSTPFYAESGGQ 535

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG  IG   R+++ DVQ+   G+ VH+ +VE G +     +   +D   R  +  NH
Sbjct: 536 VGDTGVLIGPRGRVRVEDVQRPVPGVIVHYGVVESGSVMLHDPVDAHVDSGRRAAIMRNH 595

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + PD LRFD TH++P+T  +L  IE  VN  I  + 
Sbjct: 596 TATHLLHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPLTPEQLHEIERRVNAWIRADT 655

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----------------HS 690
           PVV + ++ + AI +GA AL G KY D VR+V++   +G                    S
Sbjct: 656 PVVWQELSYQAAIEAGAIALFGEKYGDVVRMVTIGCVNGHDAPSPAALAERELAGFPMCS 715

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTHV  +GEI L  I+SESS+ AG+RRIEA+TG  A + +  Q   L+++A+ + 
Sbjct: 716 RELCGGTHVGRSGEIGLFRIISESSVAAGVRRIEALTGPEAEAWVDAQIATLQAVAARVG 775

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVD 805
             Q  +V RVE +  E ++ Q    +   ++   +L     S   + D+ F++  +   +
Sbjct: 776 APQTQLVERVEALIAELKQRQRALDELTARMARSNLEGLLASVQSVGDIRFLAAQVEAPN 835

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLG 864
           +  L+ + D L+ K+ SG+++L  +  + KA +L + T DL   R +A +L +  A ++ 
Sbjct: 836 AARLREMGDWLRDKLGSGVVVLATVF-DGKAQILAMATPDLAGKRIHAGNLVKALAPIV- 893

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG GGGRP MAQ+GG +  K  QA+  VA+ +
Sbjct: 894 GGSGGGRPDMAQAGGRDSAKIPQALEHVAAVI 925


>gi|225181972|ref|ZP_03735405.1| alanyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167334|gb|EEG76152.1| alanyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 872

 Score =  839 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/906 (39%), Positives = 520/906 (57%), Gaps = 48/906 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR+TFLEFF+   H +LPS SLIP NDPTL+   +GM P K  FTG++ P    V
Sbjct: 1   MKSKEIRSTFLEFFKGKEHLVLPSFSLIPQNDPTLLMVGAGMAPLKPYFTGEKTPPKPRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR      D++ VGRT+RH TFFEMLGNFSFG YFKE AI  AW+L+T  + L 
Sbjct: 61  ATCQKCVRT----PDIERVGRTSRHATFFEMLGNFSFGDYFKEEAILWAWELVTTGYKLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY++VY +D+EA+ +W K  G++ ++I R+   DNFW + + GPCGPCSEI++D G 
Sbjct: 117 EDKLYVSVYLDDDEAYDIWHKKVGIAPERIFRLGKEDNFWEIGQ-GPCGPCSEIYYDLGA 175

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++E+WNLVF QF      E   L + +IDTG GLER+A VLQ 
Sbjct: 176 DRGCGRPNCEVGCDCDRFLEVWNLVFTQFNCTESGEYVPLTQKNIDTGAGLERLAVVLQG 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N ++ID  + L+    +VT  +Y  +     + R+I +HLR  SF++ DGILP NEGR
Sbjct: 236 VNNLFEIDTVRPLLDHFSKVTKTEYGKDQEKDTSLRIITEHLRGISFMVGDGILPGNEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + ++LG  EP + + +  +  E G  YPEL + +  I++ +R E+ER
Sbjct: 296 GYVLRRLLRRAVRHGKILGVGEPFLHNAVNLVVDEYGEFYPELAKGREYIQKVVRLEEER 355

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TL++G+ +LD ++   G   +L GD AFKLYDT+G P+D+ ++IL       +D   
Sbjct: 356 FHETLEQGMKILDELMHKAGPRGVLPGDAAFKLYDTYGFPIDLTKEILAE-NKLILDEEG 414

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + +ALE QR RAR+       G  +  + SL++    T+F GYD L              
Sbjct: 415 YQEALEAQRERARSARGASVFGKDDTDYESLRQL--TTEFTGYDSLE------------- 459

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         V AI++ G+       G + EVV   TPFY E GGQ GDTG  I D
Sbjct: 460 ----------AEGEVLAILKDGQPASAVSEGDEAEVVLSVTPFYGERGGQAGDTGIIITD 509

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G  +++TD         +H   +++G +    +    +    R  +  NH+ATHL+H AL
Sbjct: 510 GGTMEVTDTVMTPFEQVIHRGSIKQGTVSVGDAAKGKVFAPGRSSICRNHTATHLIHTAL 569

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS +TPD LRFD T+    T  +L  +E  VN+ I  N PV   + + +
Sbjct: 570 QEVLGEHVKQAGSLVTPDRLRFDFTNLSAATPEQLAEVEQKVNEKIWANEPVSVTLASLD 629

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL   KY D VR+V V     G +S  LCGGTHV S GEI LL IVSE+ I 
Sbjct: 630 EAKDMGATALFDEKYGDAVRIVRV-----GDYSMELCGGTHVQSAGEIGLLKIVSEAGIG 684

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG  A      +++ L+  A+ LK S   +  R+  +  E++ LQ  + + 
Sbjct: 685 AGMRRIEALTGAAAYRWFAQRNQLLEQCAAQLKSSPEQLPERISGLQAEFKDLQREYQRL 744

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           +L+L   ++        + + V  +S  +S  + + L+ + D L+ K+ SGII+L G + 
Sbjct: 745 QLKLAGMEVDGLLSEVSQKSGVPVLSARVSAGNMETLREMADRLKNKLGSGIIIL-GAAA 803

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K  ++  VT DL+   ++A  L    AK+ GGGG GGRP MAQ+GG + +K + A+  
Sbjct: 804 EGKVLLVGAVTNDLVKAGYHAGKLVGEVAKLTGGGG-GGRPDMAQAGGKDPDKLESALEK 862

Query: 892 VASFLK 897
           V S ++
Sbjct: 863 VDSLVE 868


>gi|326204671|ref|ZP_08194527.1| alanyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325985238|gb|EGD46078.1| alanyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 879

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/906 (37%), Positives = 535/906 (59%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  L S+ L+P NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERYLKFFESKGHLRLASAPLVPKNDPSLLLINSGMAPLKPFFTGQEEPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH T+FEMLGNFSFG YFK  AI  AW+ +T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKNEAIPWAWEFVTEDLKMPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++T+Y++D+EAF +W K+ GL A++I+R+   DNFW    TGPCGPCSEI+FD+G   
Sbjct: 122 KLWVTIYEDDDEAFDIWHKVVGLPAERIVRMGKKDNFWEHG-TGPCGPCSEIYFDRGPEK 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+E WN VF QF +  +     L   +IDTGMGLER+A + Q+  
Sbjct: 181 GCGSPDCKVGCECDRYVEFWNNVFTQFNRDEQGNYTRLTHPNIDTGMGLERLACISQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D   +++    +  G++Y+ +    V+ RVI DH+RS++ ++ DG+LP+NEGRGY
Sbjct: 241 NLFEVDTVWNILDYICKTAGVEYKKSEKTDVSIRVITDHIRSTTMMVCDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG  +P +  +   +  E   AYPEL +    I++ ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGRLLGINKPFLYDVAMVVINESKEAYPELAEKAGYIKKVIKIEEERFE 360

Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            T+D+G+V+L+  +      K E++ G++ FKL+DT+G PLD+ ++I    GL GID   
Sbjct: 361 ATVDQGIVILNDFIDEIKAKKQEVIPGEMVFKLHDTYGFPLDLTREIAEENGL-GIDEDG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++ QR +AR       +       F   +K   T F+GY+ +              
Sbjct: 420 FKKEMDAQRKKARDAHNSKDTSAWSDSVFDKLDKSQKTAFVGYENI-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S++  IV+ GEIV+ A  G ++ V+ D+TPFYAE GGQ+GD+G  I  
Sbjct: 466 ---------VCESVILYIVKDGEIVDTAQEGDEITVILDKTPFYAEMGGQVGDSGALIAK 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              ++I +  K A+G F+H   VE G++ T  ++  +ID + R  ++ NH+ THLLH AL
Sbjct: 517 NGVIKIENCTKTADGKFLHTGFVETGLVETGSTVTASIDEKRRTAINRNHTVTHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG HV Q GS + P+ LRFD +H   +T  ELK +ED  N+ I  ++ V  + M  +
Sbjct: 577 RTVLGDHVHQAGSLVEPNKLRFDFSHFSAMTPEELKKVEDMTNEAILNSMEVDVKEMPID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY + VRVV VE      +S  LCGGTH+ +T +  L+ I+ ES + 
Sbjct: 637 EAKKLGAMALFGEKYGNTVRVVKVE-----DYSVELCGGTHLKNTAQAGLVKILGESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RR+EA+TG+ A  +   ++  L  ++  LK +  + + +VE + +E +  +    + 
Sbjct: 692 AGVRRLEALTGEAAIRYYTERENLLNEVSQALKATPQDSLKKVESLGQELKNAEKEIEQL 751

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L   +      +  ++  V  +      +D + L++  D L+ K+ SG+I+L     
Sbjct: 752 RNKLVSGESESVLANAVEVKGVKVVMARFDTMDMEGLRNTGDMLKNKLGSGVIVLGSGYG 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K S ++  T+D++ +  ++ ++ +  AK  GGGG GGRP MAQ+GG + +K D+A+  
Sbjct: 812 D-KVSFVVTATKDVVAKGIHSGNIIKEVAKTAGGGG-GGRPDMAQAGGKDLSKIDEALKS 869

Query: 892 VASFLK 897
             S ++
Sbjct: 870 AVSIVE 875


>gi|220929512|ref|YP_002506421.1| alanyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999840|gb|ACL76441.1| alanyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 879

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/906 (37%), Positives = 539/906 (59%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  LPS+ L+P NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERYLKFFESKGHLRLPSAPLVPKNDPSLLLINSGMAPLKPFFTGQEEPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH T+FEMLGNFSFG YFK  AI  AW+ +TK+ ++   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKNEAIPWAWEFVTKDLEMPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++T+Y++D+EAF +W K+ GL A++I+R+   DNFW     GPCGPCSEI+FD+G   
Sbjct: 122 KLWVTIYEDDDEAFDIWHKVVGLPAERIVRMGKKDNFWEHG-IGPCGPCSEIYFDRGPEK 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+E WN VF QF +  +     L   +IDTGMGLER+A + Q+  
Sbjct: 181 GCGSPDCKVGCECDRYVEFWNNVFTQFNKDEQGNYTRLAHPNIDTGMGLERLACISQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D   ++++   +  G++Y+ +    V+ RV+ DH+RS++ ++ DG+LP+NEGRGY
Sbjct: 241 NLFEVDTVWNILEFICKTAGVEYKKSEKTDVSIRVVTDHIRSTTMMVCDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG  +P +  +   +  E   AYPEL +    I++ ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGRLLGINKPFLYDVAMVVINESKEAYPELAEKADYIKKVIKIEEERFE 360

Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            T+D+G+++L+  +      K  ++ G++ FKL+DT+G PLD+ ++I    GL GID   
Sbjct: 361 ATVDQGIIILNEFIDEIKAEKQNVIPGEMVFKLHDTYGFPLDLTREIAEENGL-GIDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++ QR +AR       +       +   +K   T F+GY+                
Sbjct: 420 FKREMDAQRKKARDAHNSKDTSAWSDSVYDKLDKSQKTAFVGYENTASD----------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S++  IV+ GEIV+ A  G ++ V+ D+TPFYAE GGQ+GDTG     
Sbjct: 469 ------------SVILYIVKDGEIVDTAQEGDEITVILDKTPFYAEMGGQVGDTGILTAQ 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             +++I +  K A+G F+H   VE GI+ T  ++  +ID + R  ++ NH+ THLLH AL
Sbjct: 517 NGKVKIENCTKTADGKFLHTGFVETGIVETGSTITASIDEKRRIAINRNHTVTHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG HV Q GS + P+ LRFD +H   +T  ELK +ED  N++I  ++ V  + M+ +
Sbjct: 577 RTVLGDHVHQAGSLVEPNKLRFDFSHFSAMTPEELKKVEDITNEVILSSMNVNIKEMSID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY + VRVV VE      +S  LCGGTH+++T +  L+ I+ ES + 
Sbjct: 637 EAKKLGALALFGEKYGNTVRVVKVE-----DYSIELCGGTHLNNTAQAGLVKILGESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RR+EA+TG+ A  +   ++  L  +A  LK +  + + +VE + +E +  +    + 
Sbjct: 692 AGVRRLEALTGEAAIRYYTDRENLLNEVAQALKAAPQDSLKKVESLGQELKNAEKEIEQL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L   +         +I  V  ++     +D + L++  D L+ K+ SG+++L     
Sbjct: 752 RNKLVSGEAESVLANAVEIKGVKVVTARFDTMDMEGLRNTGDMLKNKLGSGVVVLGSGYG 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K S ++  T+D++ +  ++ ++ +  AK  GGGG GGRP MAQ+GG + +K D+A+  
Sbjct: 812 E-KVSFIVTATKDVVAKGIHSGNIIKEVAKTAGGGG-GGRPDMAQAGGKDLSKIDEALKT 869

Query: 892 VASFLK 897
            AS ++
Sbjct: 870 AASIVE 875


>gi|332160302|ref|YP_004296879.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325664532|gb|ADZ41176.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 838

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/875 (42%), Positives = 529/875 (60%), Gaps = 56/875 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AI  AW+LLT  + F+L + +L++TVY+ D+EA+++W    G+  ++IIRI
Sbjct: 61  SFGDYFKHDAISFAWELLTGEQWFNLPKEKLWVTVYETDDEAYEIWANDIGIPRERIIRI 120

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFM
Sbjct: 121 GDNKGSAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFM 180

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI+A  +VTG     
Sbjct: 181 QFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATD-- 238

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
            +  + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 239 LSSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLV 298

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MG A  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L   + L+G+ 
Sbjct: 299 APLIAVMGPAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT-GDTLDGET 357

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR       S      + 
Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARE------SSGFGADYN 410

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
           +L     A+QF GYD +                          + V A+ + GE V+E  
Sbjct: 411 NLIRVDSASQFSGYDHV-----------------------HQQATVTALFRNGEAVDEIH 447

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G++  VV +QTPFY E+GGQ+GDTG          + D QK       H   +  G LR
Sbjct: 448 EGEEAVVVLNQTPFYGESGGQVGDTGELKNATATFAVADTQKYG-QAIGHLGQLAHGTLR 506

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              S+   ID   R ++ +NHSATHLLH AL   LG HV+Q GS +    LRFD +H + 
Sbjct: 507 VNHSIDAQIDAARRNRIRLNHSATHLLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEA 566

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   +++ +ED VN+ I +N+PV T +M  + A   GA AL G KY+D+VRV+++     
Sbjct: 567 MKPEQIRLVEDMVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVRVLTM----- 621

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGG H S TG+I L  I+SES   AGIRRIEA+TG+ A + L  Q + L+ +A
Sbjct: 622 GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVA 681

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII 801
             +K    N+  +V  + +  + L+    + K Q   ++ +        +  V  +   +
Sbjct: 682 HLVKGDTHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSNAKLVNGVKLLVSQL 741

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
             V+ K L++++D L+ ++ S II+L  I+ + K S+++ VT+DL  +  A +L    A+
Sbjct: 742 DNVEPKMLRTMVDDLKNQLGSAIIVLATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQ 800

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + GG GGGRP MAQ+GG N      A+A V +++
Sbjct: 801 QV-GGKGGGRPDMAQAGGTNVQALPSALASVEAWV 834


>gi|284048255|ref|YP_003398594.1| alanyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283952476|gb|ADB47279.1| alanyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 875

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/913 (36%), Positives = 511/913 (55%), Gaps = 58/913 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+FF++ GH +LPS+SLIP +DPTL+   +GM PFK  FTG+ KP  
Sbjct: 1   MKYLSGNEIRQKYLDFFKERGHLVLPSASLIPHDDPTLLLIGAGMAPFKPYFTGKVKPPA 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +TT QKCVR G    D++NVGRT RHHT+FEMLGNFSFG YFK+  I  AW+ LTK  
Sbjct: 61  TRITTCQKCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWAWEFLTKVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L   +L+ITVY +D+EA+ LW  + G+ A++I+++   DN+W +   GPCGP SEI  D
Sbjct: 117 ELPADKLWITVYPKDQEAYDLWHDVCGVPAERIVKL--EDNWWEITSGGPCGPDSEIHID 174

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
            GE    G P      +  R++E+WNLVF Q+ ++       L   +IDTG+GLER+A+V
Sbjct: 175 LGEERGCGSPDCGPGCDCGRFLELWNLVFTQYNKEPDGSYTPLQHKNIDTGLGLERVASV 234

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ K +N++ DL   +I+ + +V+G  Y     + V+ +VI DH RS +F+I DGILP+N
Sbjct: 235 LQNKPSNFETDLIFPIIEYACRVSGKTYNADPKDDVSLKVIADHARSVTFMIGDGILPSN 294

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ + RLLG  +  ++     +    G  Y +L + K  IE+ +  E
Sbjct: 295 EGRGYILRRVLRRAIRHGRLLGIRKEFLVGAADLVIDMYGDHYTDLREKKSYIEKVIAME 354

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL++G  LL+  +  + K    +LNG+ AF+LYDT G P ++ ++IL  +G   
Sbjct: 355 ENSFLQTLEQGTDLLNQKIDAMRKAGSTVLNGEDAFQLYDTFGFPWELTEEILEEQGFT- 413

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E QR RAR+                                +  K +  +
Sbjct: 414 MDKEGFEKAMEAQRERARSARND----------------------------KEGKPVLYE 445

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
            + L            +  V AI      + ++ A SG ++ V+   T F+AE GGQLGD
Sbjct: 446 TRHLKLGTLTVDEASKNGKVAAIFPAHDTQPIQNAKSGDELAVILTNTAFHAEGGGQLGD 505

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG  + D     +TD +K  +G  +    +E+G L     +   ++ + R  ++ NH+AT
Sbjct: 506 TGRLVSDKGIFNVTDTKKLPDGYTIQLGTLEQGTLSVGDEVEFEVNLKRRADIARNHTAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LGSHV+Q GS + PD LRFD +H  P+T  EL  +ED VN+ I   + V 
Sbjct: 566 HLLHAALKQVLGSHVNQAGSYVGPDRLRFDFSHFSPLTEEELAQVEDIVNEKILDAVDVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
                 E A   GA AL G KY   VRVV+V       +S  LCGG HVS+T  I L  I
Sbjct: 626 ISQQELEKAREMGAMALFGEKYGKIVRVVNVPG-----YSMELCGGVHVSNTSHIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SESS+ AG+RRIEA+TG+ A ++    +  +   A+ +K    N+V R+  + E+ R  
Sbjct: 681 LSESSVGAGVRRIEAVTGRGALAYTRELENLIGEAATAVKGRPNNLVTRISALQEDLRAE 740

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + + +L     +        +  V F++  +   D   L+ + D L+ K   G++
Sbjct: 741 KHRADEMEKKLVAAQAASVTADAKDVKGVAFLAQEVKVQDVDALRKMGDTLRDKTG-GVV 799

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L       K ++L++ +++ + +  +A  +A+  A+ + GG GGGRP MAQ+GG + +K
Sbjct: 800 VLAAPMSADKVNILVMASKEAVKKGIHAGKIAKAVAQTM-GGNGGGRPDMAQAGGKDASK 858

Query: 885 ADQAIAGVASFLK 897
             + +A     ++
Sbjct: 859 VQEGLARALELVE 871


>gi|221066868|ref|ZP_03542973.1| alanyl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220711891|gb|EED67259.1| alanyl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 874

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/909 (40%), Positives = 531/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+F+   GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   SVADIRKTFLDFYASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ +I+  W+LLTK F L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESIEWGWELLTKVFGLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175
            +L  TVY ED+EA+ +WK + GL A++IIRI         +DNFW MA+TGPCGPCSEI
Sbjct: 127 EKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGDNKGGKYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWN VFMQF+ +       LP   +DTGMGLER+A
Sbjct: 187 FYDHGEHIAGGPPGSPEEDGDRFIEIWNHVFMQFDMKEDGSVVKLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF+ LI+A+ + T  +    +  + +VI DH+R++SFL++DG++P+N
Sbjct: 247 AILQHVHSNYEIDLFQALIKAAGRETHTED--LSTPSLKVIADHIRATSFLVSDGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I   L++E
Sbjct: 305 EGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVADLVVQMGDAYPKLKEQQAHITSVLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  ++L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 365 EERFFETLANGMEILDSALA--GDVKVLPGDVAFKLHDTYGFPLDLSNDVARERGVT-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A++ Q+  ARA           K+  +L+       F+GYD L           
Sbjct: 422 EAGFNAAMQHQKETARAAGKF-------KMDRALEYTGQGNTFVGYDKL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ + A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 464 ------------AESAKIVALYADGVSVSELKAGQNGVVVLDTTPFYAESGGQVGDQGVI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  + D  K    +F HH ++E G L+   ++   +D   R     NHS TH++H
Sbjct: 512 AAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVGDAVEAQVDTAVRAATMRNHSVTHIMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  +  N P   R+M
Sbjct: 572 KALREVLGGHVQQKGSLVNAERTRFDFAHNAPVTAEQIREIEARVNAEVLANTPTDARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHVS TG+I L  +V ES
Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVSRTGDIGLFKVVGES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIE ITG+ A ++L   +  +   A+  K     +  R+    ++ + L+   
Sbjct: 686 GVAAGVRRIEGITGENALAYLQSLESTVDQAAAAFKAPAAELTNRIGGALDQIKALEKEI 745

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L              +  V  ++  +   D+K L+  MD L+ K+ + +I+L  
Sbjct: 746 AALKGKLASSQGDELATQAADVNGVKVLAAKLEGADAKTLRDTMDKLKDKLGAAVIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT+    +  A +L    A+ +GG G GG+P MA +GG +      A+
Sbjct: 806 VDGD-KVQLAAGVTKAETAKVKAGELVNFVAQQVGGKG-GGKPDMAMAGGTDAAAVPAAL 863

Query: 890 AGVASFLKK 898
           A V +++ +
Sbjct: 864 ASVQAWVAE 872


>gi|332041455|gb|EGI77817.1| alanyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 888

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/923 (39%), Positives = 524/923 (56%), Gaps = 70/923 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 7   SVADIRKTFLDFFASKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRAA 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ ++  AW+LLT  + L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESLNWAWELLTTVYKLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKI---SGLSAD------KIIRIT-------TNDNFWSMAET 166
            +LY TVY ED+EA+ +W+ I   +G + +      +IIRI         +DNFW MA+T
Sbjct: 127 DKLYATVYLEDDEAYGIWEDIFVKAGWTPERIRQENRIIRIGDNKGGRYKSDNFWMMADT 186

Query: 167 GPCGPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           GPCGPCSEIF+D G  I GG P    E+G+R+IEIWN VFMQFE         LP   +D
Sbjct: 187 GPCGPCSEIFYDHGPHIAGGPPGSPDEDGDRFIEIWNNVFMQFEMHEDGTVTPLPAPCVD 246

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFL 285
           TGMGLER+A +LQ   +NY+IDLF  LI+A+ +  G +    +  + RVI DH+R+++FL
Sbjct: 247 TGMGLERLAAILQHVHSNYEIDLFDALIKAAAREVGTQD--LSNPSLRVIADHIRATAFL 304

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ++DG++P+NEGRGYV RRI+RRA+ +   LG   P    L+  L   MG AYP L + + 
Sbjct: 305 VSDGVIPSNEGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVGELVRLMGDAYPRLKEQQQ 364

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            I E L++E+ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT+G PLD+  D+ 
Sbjct: 365 RITEVLKAEEERFYETLANGMEILDAALG--GGAKVLPGDVAFKLHDTYGFPLDLTNDVC 422

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +D   F  A+++Q+++ARA           K+  +L        F+GY+ L  
Sbjct: 423 RERGVT-VDEAGFKSAMDKQKNQARAAGKF-------KMDKALDYTGAGNVFVGYEKLE- 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  ++ + A+   G    +  SGQ   VV D TPFYAE+G
Sbjct: 474 ----------------------AAAKIVALYVDGTPTAQLKSGQDGVVVLDTTPFYAESG 511

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G  +    R ++ D QK    +  HH  +  G L    ++   ++   R     
Sbjct: 512 GQVGDEGLIVAGPARFEVADTQKIKADVHGHHGTLAAGTLNVGDTVTAQVNLSRRAATMR 571

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHS THL+H AL  +LG+HV Q GS +  D  RFD TH+ P+T A++  IE  VN+ I  
Sbjct: 572 NHSVTHLMHKALHEVLGAHVQQKGSLVDADKTRFDFTHNAPVTPAQIAEIERRVNEEILA 631

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N     R+++ E A A+GA  L G KY D VRV+ +        S   CGGTHV  TG+I
Sbjct: 632 NSATQARVLDIEAAKATGAVMLFGEKYGDTVRVLDIG------TSREFCGGTHVPRTGDI 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  IV ES + AGIRR+EA+TG  A  +L   +  +   A  LK     + GR+ ++ +
Sbjct: 686 GLFKIVGESGVAAGIRRVEAVTGANALGYLQTLESTVHQAAGALKAPAAELQGRITQVLD 745

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIAD-----VNFMSHIISEVDSKELKSVMDA 815
           + + L+   A  K +L             ++       +  ++  +   D+K L+  +D 
Sbjct: 746 QVKALEKEIAALKGKLASSQGDELMAQAVEVKGRDGVALRVLAATLQGADAKVLRETLDK 805

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           L+ K+++  I+L  + +  K  +   VT D + +  A +L    A+ +GG G GG+P MA
Sbjct: 806 LKDKLKTAAIVLATV-EGGKVQIAAGVTADSVGKIKAGELVNFVAQQVGGKG-GGKPDMA 863

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
            +GG + +   +A+  V  ++ +
Sbjct: 864 MAGGTDASGLPKALQAVQGWVAE 886


>gi|304316715|ref|YP_003851860.1| alanyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778217|gb|ADL68776.1| alanyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 879

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/906 (39%), Positives = 550/906 (60%), Gaps = 50/906 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF+  GH  LPS SL+P ND +L+  N+GM P K  FTG+E P  + VTT 
Sbjct: 7   NEIREKYLSFFESKGHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGKEIPPRKRVTTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +TK  +L + R
Sbjct: 67  QKCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTKVLELPEDR 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++T+Y+ D+EA+ +W K+ GL  ++I+R+   DNFW +  TGPCGPCSEI+FD+GE   
Sbjct: 123 LWVTIYENDDEAYDIWNKVVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEKG 181

Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P      + +R+IE WNLVF QF++ ++     LPK +IDTGMGLERMAT++Q   +
Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFDKDSEGNYNSLPKPNIDTGMGLERMATIMQGVDS 241

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D+ + +     ++ G+KY  +  N V+ RVI DH+R  +F+I+DGILP+NEGRGYV
Sbjct: 242 IFDVDVIRGITDYVGEMAGVKYGDDKKNDVSLRVITDHIRGVTFMISDGILPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  Y +LLG  +P + +++  +      AYPELI+ K  I++ ++ E+ERF +
Sbjct: 302 LRRILRRAARYGKLLGLDKPFLHNVVDVVVEHYSGAYPELIERKDYIKKVIKKEEERFKE 361

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+GL +LD  ++ L  +   +L G+ AFKLYDT+G P+++ ++IL   G+  +D + +
Sbjct: 362 TIDQGLGILDEYINDLRSEGKTVLEGNKAFKLYDTYGFPIELTKEILNESGMT-VDEVEY 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + LE+QR RAR+      +   + I+ +LK+    T+F+GYD ++              
Sbjct: 421 QKELEKQRLRARSSRKEDNALWEKDIYSTLKDI--ETKFVGYDSVKSD------------ 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + V AI++  E+V+ A +G++V V+ D TPFYAE+GGQ+GD G    + 
Sbjct: 467 -----------AKVLAIIKDNELVDSAEAGEEVNVILDMTPFYAESGGQVGDKGVIKNED 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + + I D +K     FVH   VERGIL    ++   ID +NR   + NH+ATHLLH AL 
Sbjct: 516 VFVNIKDCKKAGGNKFVHIGTVERGILSVGDTVEALIDEKNRLSTARNHTATHLLHSALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +G HV Q GS +TP+ LRFD TH + +T  E+K+IE+ VN+ I +N+ V   IM+ ++
Sbjct: 576 KFIGDHVHQAGSLVTPERLRFDFTHYQALTDEEIKTIENEVNEKIYENIDVSVDIMSHDE 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  GA AL   KY D VRVV+V       +S  LCGGTHV +TG I +  I+SES + A
Sbjct: 636 ALKKGAMALFQEKYGDVVRVVNV-----SDYSKELCGGTHVDNTGNIGVFKIISESGVAA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEA+TG  A  ++  ++E + ++   LKV++ ++V RV  + +  +  +    + K
Sbjct: 691 GIRRIEAVTGINAVKYMNEKEEIIANIGQILKVNEKDIVNRVTGMSQTIKDYEKQIEQLK 750

Query: 779 LQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            ++                 V F+S ++++ D  ELK + D L+ K++S +++     + 
Sbjct: 751 SKIVSSTSERLINLAVDFNGVKFISAVLNDFDVDELKMMGDILKDKLKSAVLV-FATIRN 809

Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K + + + T+D++    N   + +   + + GG GGGRP MAQ  G N +K + A+   
Sbjct: 810 GKINFVGMATKDVVKFGINVGTIIKEVCQ-IAGGKGGGRPDMAQGVGNNLDKVNDALNAS 868

Query: 893 ASFLKK 898
              + +
Sbjct: 869 KMLVME 874


>gi|197301771|ref|ZP_03166841.1| hypothetical protein RUMLAC_00497 [Ruminococcus lactaris ATCC
           29176]
 gi|197299211|gb|EDY33741.1| hypothetical protein RUMLAC_00497 [Ruminococcus lactaris ATCC
           29176]
          Length = 879

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/907 (38%), Positives = 505/907 (55%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH ++ S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLVMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY+ED+EAF +W K  G+ A++I R    DNFW    +GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYEEDDEAFDIWNKKMGIPAERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG     E +RY+EIWN VF QF          L + +IDTGMGLER+A ++Q+  
Sbjct: 181 GCGKPGCTVGCECDRYMEIWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLACIVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L     +++G +Y  +    V+ RV+ DH+RS +F+I+DGILP+N GRGY
Sbjct: 241 SMFDIDTMKALRDHVCRLSGKQYGTDHETDVSLRVVTDHVRSVTFMISDGILPSNSGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG     ++ L   +       YPEL + K  I   +  E+  F 
Sbjct: 301 VLRRLLRRACRHGKLLGIEGAFLVELATTVIEGSKDGYPELEEKKEFIFNVIAKEEANFN 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + + K  +++L+G+ AF+LYDT+G P+D+  +IL  +GL   D   
Sbjct: 361 KTIDQGLAILADMEAEMEKKGEKVLSGENAFRLYDTYGFPIDLTSEILEEKGLT-YDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A EEQR+++            E   +   +    T+F+GYD L              
Sbjct: 420 FKKAQEEQRAKSEGTFGTHSYTGKEVSVYDELDAEIGTEFVGYDHL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V A+  + EIV+    G+K  ++ +QTPFYA  GGQ  D G     
Sbjct: 466 ---------TFDSKVSALTTEDEIVDALSDGEKGTIIVEQTPFYATMGGQEADKGVIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + D    A     H   V +G+++   ++ L ++ +NR     NHSATHLL  AL
Sbjct: 517 EGEFVVEDCIHLAGTKVGHIGHVTKGMIKIGDTVTLEVNAKNRALTERNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +  D LRFD TH   +T  ELK +E+ VN+ I   L VVT+ +  E
Sbjct: 577 RTVLGSHVEQAGSFVNEDRLRFDFTHFSAVTPEELKKVEEIVNEQIQNALEVVTKNLPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV +        S   CGGTHV +T EIM L I+SES + 
Sbjct: 637 EARKTGAQALFGEKYGDVVRVVDMGG-----FSVEFCGGTHVKNTSEIMALKIISESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T      +    +  LK  A  +K S  N+  ++  +  E + L+      
Sbjct: 692 AGVRRIEALTSDGLMKYYAEMEHLLKEAAQLIKASPENLAEKITHLQAENKALKGEVDSL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++  E          ++  V  ++  +  VD  EL+ + D  ++K+  G+++L     
Sbjct: 752 KSKMAQEAAGNVLDRVKEVKGVKLLAAQLDGVDMNELRELGDQFKEKLGEGVVVLASG-N 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K S++  VT   +    +A +L +  A ++GGGG GGRP+MAQ+GG N     QA+  
Sbjct: 811 EGKVSLMATVTNGAMKQGAHAGNLVKAIAGLVGGGG-GGRPNMAQAGGKNPAGIAQALEK 869

Query: 892 VASFLKK 898
               L +
Sbjct: 870 AEEVLAE 876


>gi|254524059|ref|ZP_05136114.1| alanyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219721650|gb|EED40175.1| alanyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 882

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/892 (42%), Positives = 532/892 (59%), Gaps = 49/892 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ LW+ + G+  ++I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGVPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG P    E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI+ + ++TG         + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTAD--LENKSLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    L+P L  +MG AYPEL  A   +   L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAMDTVTRALQAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V      + ++ G  AF+LYDT+G PLD+ QDI   R L  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAGKAS-NGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I  F+ A+E+QR  ARA       G    +   L      T F+GYD L+          
Sbjct: 424 IAGFDAAMEQQRETARAAGKF---GGGVTLPAELVATLSPTVFLGYDRLQADGLS----- 475

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++ G  V+ A +G  V V+ +QTPFYAE+GGQ+GDTG  
Sbjct: 476 -----------------VLALLKDGRPVQSADAGDSVIVITNQTPFYAESGGQVGDTGVL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G+RL + D QK A     H   +  G L+    L   +D + R    +NHSATHLLH
Sbjct: 519 TGNGVRLAVEDTQKFAGQFHGHVGTLSEGGLKIGDVLSGQVDGERRGATILNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PI++ EL  IE  VN  +  N       M
Sbjct: 579 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHTM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 639 AMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  H+  ++ +L   A  L  S  +VV ++  + +  ++L+   
Sbjct: 694 GVSAGVRRIEAVTGQGALDHVDAEEARLAEAAELLGGSAADVVEKIRALGQRQKQLEREL 753

Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K ++             ++A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 754 EAVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAVIVLAG 813

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ KA+++  V      +  A +L    A  +GG G GGRP +AQ GG +
Sbjct: 814 A-QDGKAALVAGVNGSATGKVKAGELLSHIAGQIGGKG-GGRPDLAQGGGED 863


>gi|220906096|ref|YP_002481407.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|219862707|gb|ACL43046.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 889

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/909 (37%), Positives = 514/909 (56%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ++      
Sbjct: 16  MSGAEIRQRFLDFFAARGHKILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQEAEVPRA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR    +ND++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+L+T+ + L 
Sbjct: 75  TTSQKCVR----NNDIENVGRTARHHTFFEMLGNFSFGDYFKPDAIAWAWELVTEVYHLP 130

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL ++V+ +D+EAF++W +  GL   +I R+  + NFW+   TGPCGPCSEI+FD   
Sbjct: 131 ADRLVVSVFQDDDEAFEIWNQKIGLPPQRIRRMGEDSNFWAAGPTGPCGPCSEIYFDFHP 190

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G      ++  R++E++NLVFMQ+ +  +     L   +IDTGMGLERMA VLQ   
Sbjct: 191 E-RGEQNIDLDDDSRFLELYNLVFMQYNRDAEGNLSPLKNKNIDTGMGLERMAQVLQGVP 249

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRG 298
           NNY+ DL   +IQ + ++  + Y  +      + +VI DHLR+   +IADGI  +N GRG
Sbjct: 250 NNYETDLIFPIIQKAAEIADLDYSKSTDSTKISLKVIGDHLRAVMHMIADGITASNVGRG 309

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RR + + RL+G  +P    ++        +AYP +      I+  L+ E+E F
Sbjct: 310 YVLRRLIRRIVRHGRLIGIDKPFTAEVVETAIELAEAAYPNVRLKGDSIKAELQREEESF 369

Query: 359 GKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            KTLDRG  LL  ++S +        ++G  AF LYDT+G PL++ Q+I   +GL  +D+
Sbjct: 370 LKTLDRGEKLLADIISRVQSKPGKQQISGQDAFTLYDTYGFPLELTQEIAAEQGLT-VDL 428

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR RAR     +   T +     L E    T+F+GY               
Sbjct: 429 EGFEAEMEQQRQRARDAHETIDL-TVQGTLDKLAEHIHTTEFLGYSQFSSP--------- 478

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         SIV A++ +G+ V    +G  V++V DQTPFYAE+GGQ+GD G   
Sbjct: 479 --------------SIVTALLVEGQTVTTVEAGTTVQIVLDQTPFYAESGGQIGDRGYLS 524

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           GD + ++I DV +K  GIF+H+  VERG ++    +   ID   RR++  +H+ATHLL  
Sbjct: 525 GDTLLVRIEDV-QKESGIFIHYGRVERGSVQVNDRVTAQIDLSCRRRVQAHHTATHLLQS 583

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++  ++SQ GS ++ D LRFD    +P+T+AEL++IED +N  IA+  P  T ++ 
Sbjct: 584 ALKKLVDDNISQAGSLVSFDRLRFDFNCPRPVTAAELQAIEDQINTWIAEAHPAQTSVLP 643

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A A GA A+ G KY   VRV+ V        S  LCGGTHVS+T EI L  I++E+ 
Sbjct: 644 IAEAKAKGAIAMFGEKYGSEVRVLDVAG-----VSMELCGGTHVSNTAEIGLFKIIAETG 698

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +GIRRIEA+ G     +L  ++  ++ L+   KV    V  RV  +  E +  Q   A
Sbjct: 699 VASGIRRIEAVAGPAVLEYLNLRERVVRDLSDRFKVKPEEVPDRVTALQTELKTTQKQLA 758

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L +            I     +   +  VD++ LK+  + L +K+  G ++L  +
Sbjct: 759 ELKNELALAKSDSLLAQVEAIGSFKVLVAQLEGVDAEALKTAAERLLQKLAPGAVVLASV 818

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + +K +++   + +   +  +A       A+ L GG GGGRP++AQ+GG +  K  +AI
Sbjct: 819 PELEKVNLVAAFSSEAQQKNLHAGKFIGEIAQ-LCGGKGGGRPNLAQAGGRDAAKLPEAI 877

Query: 890 AGVASFLKK 898
                 L +
Sbjct: 878 EFARKKLIE 886


>gi|312171401|emb|CBX79660.1| Alanyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 833

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/869 (42%), Positives = 523/869 (60%), Gaps = 56/869 (6%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK++F GQ+K  Y    + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDVFLGQDKRNYTRAASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157
           K  AI  AW+LLT  + F L + +L++TVY+ D+EAF +W+K  G+  ++IIRI  N   
Sbjct: 61  KHEAIAFAWELLTSSQWFGLPKEKLWVTVYETDDEAFNIWEKEIGVPRERIIRIGDNKGS 120

Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQN 212
               DNFW M +TGPCGPCSEIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF ++ 
Sbjct: 121 AYASDNFWQMGDTGPCGPCSEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRKA 180

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LPK S+DTGMGLER+  VLQ   +NY+IDLF  LIQ+  QVTG      +  + 
Sbjct: 181 DGTMLPLPKPSVDTGMGLERITAVLQHVNSNYEIDLFAQLIQSVAQVTGATD--LSNKSL 238

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG        LL  L   
Sbjct: 239 RVIADHIRSCAFLIADGVIPSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLLAPLIAV 298

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MG+A  +L   +  +E+ LR+E+E+F KTL+RGL LLD  L +L   ++L+G+  F+LYD
Sbjct: 299 MGAAGDDLKSQQSQVEQVLRTEEEQFAKTLERGLALLDEELENLQ-GDMLDGETVFRLYD 357

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T G P+D+  D+   R L  ID   F +A+E+QR RAR       +      + ++    
Sbjct: 358 TFGFPVDLTADVCRERNLK-IDEAGFERAMEQQRQRAR------DASGFGSDYNNVIRID 410

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A++F GY  L+                       +++ + AI   G+      +GQ+  
Sbjct: 411 QASEFKGYQQLQ-----------------------LNAAISAIFVDGQAANTISAGQEGV 447

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D TPFYAE+GGQ+GDTG   G+     +++ QK A+    H   +  G LR    + 
Sbjct: 448 IVLDATPFYAESGGQVGDTGKLQGNSASFIVSNTQKYAQ-AIGHSGKLAIGELRVGDCVA 506

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   R ++ +NHSATHLLH AL  +LG HVSQ GS +    LRFD +H + +T  E 
Sbjct: 507 AQVDEARRARIRLNHSATHLLHAALRQVLGQHVSQKGSLVNDTYLRFDFSHFEAMTPQET 566

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           + +E+ VN  I +NLP+ T IM  E A A GA AL G KY+D VRV+S+     G  S+ 
Sbjct: 567 RQVEEIVNAQIRRNLPIETNIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTE 621

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTH S TG+I L  I SES   AG+RRIEA+TG+ A + L  Q+E+L  +A  +K +
Sbjct: 622 LCGGTHASRTGDIGLFRITSESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAQLVKAN 681

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSK 807
             N+  +V  + +  R L+    + K Q   ++          +     +   +S+V+ K
Sbjct: 682 HSNLNEKVRALIDHARALEKQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPK 741

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L++++D L+ ++ S II+L  ++ + K S++  VT+DL DR  A +L    A+ + GG 
Sbjct: 742 MLRTMVDDLKNQLGSAIIVLATVA-DGKVSLITGVTKDLTDRIKAGELVGELAQKV-GGK 799

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGGRP MAQ+GG +      A+AGV S++
Sbjct: 800 GGGRPDMAQAGGTDAMALPAALAGVESWV 828


>gi|283853948|ref|ZP_06371151.1| alanyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283570662|gb|EFC18719.1| alanyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 880

 Score =  834 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/899 (43%), Positives = 535/899 (59%), Gaps = 42/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL+FF   GH+ + SS LIP  DPTL+FTN+GMV FK +F GQ+KP Y+ 
Sbjct: 1   MMTANEIRAKFLDFFAAQGHQKVASSPLIPREDPTLLFTNAGMVQFKKVFLGQDKPGYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT+   L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTEVIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY TVY +D+EA  LWKKI+GL+ D+I R+   DNFWSM +TGPCGPCSEI FD+G
Sbjct: 121 DKSRLYATVYLDDDEAHGLWKKIAGLTDDRIFRLGEKDNFWSMGDTGPCGPCSEIMFDRG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G      + + +RY+EIWNLVFMQ++Q     R  LP+ SIDTGMGLER+A V+Q
Sbjct: 181 EEVSCGPDCGIGTCDCDRYLEIWNLVFMQYDQIAPGNRVALPRPSIDTGMGLERIAAVVQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+DIDLFK +I ++  + G+ Y  N+      RVI DH RS +FL+ADG++P+NEG
Sbjct: 241 GVHSNFDIDLFKAIIASAATIAGVAYGHNDEHDTALRVIADHSRSVAFLLADGVMPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ + +L+G ++P +      +   MG A+PEL+  +  +E  +R E+E
Sbjct: 301 RGYVLRRLIRRALRFGKLIGLSDPFLYKTAGTVVDVMGDAFPELLAGREFMERVVREEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RFG TLD+GLV+L   L  LG+  + +++G  AFKLYDT+G PLDI+ D+   RG+A  D
Sbjct: 361 RFGVTLDKGLVILAEELDRLGEAGEAVISGQFAFKLYDTYGFPLDIVNDVAGKRGMAA-D 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              +   + EQ++RA+    G G      ++  L E    ++F+GYD L G+        
Sbjct: 420 EDGYRACMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFVGYDALTGA-------- 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S V A+V  +G+ VE  V+G+   +V   TPFY E+GGQ GD G 
Sbjct: 472 ---------------SRVNALVSAEGQAVERLVAGETGYMVCAVTPFYGESGGQSGDVGL 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    +    K    +  HH  V++G +  +    L +D   R   + NH+ATHLL
Sbjct: 517 VSTLTGDAAVIGAIKAGPDLTAHHIEVKKGEILLDQEAELAVDPAVRAATARNHTATHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV+Q GS +TPD LRFD TH   +T  EL  +ED VN  I  + PVVT +
Sbjct: 577 HKALKNVLGSHVNQAGSLVTPDRLRFDFTHIAAMTPDELARVEDEVNAAILLDAPVVTEV 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A A GA AL G KY D VRVV V        +   CGGTH+ +TG+     I+SE
Sbjct: 637 MGIDAARAKGATALFGEKYGDEVRVVEVPG-----VTMEFCGGTHLRATGQAGSFLILSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG RRIEA TG  A  H+     +       LK   G +V RV++++++ R L   
Sbjct: 692 SGVAAGTRRIEAATGLNALRHVREMRGEYDEGLKTLKAKPGELVPRVKKLFDDIRALGKE 751

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   +L             ++  V  +   +   + K L+  MD L+ K+ SG+I L 
Sbjct: 752 KEQLAGKLASGQGRDLMAGLEEVGGVKLLCARVDAPNVKALREAMDDLRSKLPSGVIALA 811

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              ++ K S+++ V++DL  RF A  L + +A  +GG G GGRP MAQ+GG N    D+
Sbjct: 812 AEQEDGKVSLIVAVSKDLHARFTAPVLIKDAAASVGGSG-GGRPDMAQAGGTNPAGIDE 869


>gi|239908964|ref|YP_002955706.1| alanyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|239798831|dbj|BAH77820.1| alanyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 880

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/899 (41%), Positives = 524/899 (58%), Gaps = 42/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLE+F   GH+++ SS L+P  DPTL+FTN+GMV FK +F GQ+KP Y  
Sbjct: 1   MMTATEIRAKFLEYFASKGHQVVASSPLVPREDPTLLFTNAGMVQFKKVFLGQDKPGYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAITFAWEFLTEVIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY TVY +D+EA  LWKKI+GLS ++I R+   DNFWSM +TGPCGPCSEI +D+G
Sbjct: 121 DKSRLYATVYLDDDEAHGLWKKIAGLSDERIFRLGEKDNFWSMGDTGPCGPCSEIMYDRG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G      + + +RY+EIWNLVFMQF+Q     R  LP+ SIDTGMGLER+A V+Q
Sbjct: 181 EEVGCGPNCGIGTCDCDRYLEIWNLVFMQFDQIEPGNRVALPRPSIDTGMGLERIAAVVQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+DIDLF+ +I ++ Q+ G+ Y     +    RVI DH RS +FL+ADG++P+NEG
Sbjct: 241 GVHSNFDIDLFQTIISSAAQIAGVTYGDNDEHDTALRVIGDHSRSVAFLLADGVMPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ + +L+G ++P +      +   MG AYPEL+ ++  +E  +R E+E
Sbjct: 301 RGYVLRRLIRRALRFGKLIGLSDPFLYKTAGVVVDVMGPAYPELVASREFMERVVREEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RFG TLD+GL +L   L  +    +  + G+ AFKLYDT+G PLDI+ D+   RG+A  D
Sbjct: 361 RFGVTLDKGLAILAEELDRMAAAGETTITGEFAFKLYDTYGFPLDIVNDVAGKRGMAA-D 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              +   + EQ++RA+    G G      ++  L E    ++F GY  L           
Sbjct: 420 EDGYRVCMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFTGYTEL----------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S V A++  +G+ VE  ++G+   +V   TPFY E+GGQ GD G 
Sbjct: 469 ------------TAKSRVNALISAEGQAVERLIAGETGYMVSAVTPFYGESGGQAGDVGT 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                  + +    K    +  HH  V++G +  +    L +D   R   + NH+ THLL
Sbjct: 517 VTTLTGDVAVLGTMKAGPELTAHHIQVQKGEILLDQEAELVVDAAVRAATARNHTCTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +TPD LRFD +H   +T+ EL  +ED VN  I  + PVV   
Sbjct: 577 HKALKNVLGGHVNQAGSLVTPDRLRFDFSHVSAMTAEELARVEDEVNAAILLDAPVVVEE 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +  E A A GA AL G KY D V        +    S  LCGGTH+ +TG+    YI+SE
Sbjct: 637 LGIEAARAKGATALFGEKYGDVV-----RVVEVPGVSMELCGGTHIGATGQAGSFYILSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG RRIEA+TG  A  H+     +L      +K   G +  RV+++ +E + L   
Sbjct: 692 SGVAAGTRRIEAVTGVNALRHVREMRGELDEALKTVKAKPGELGARVKKLLDEIKALGKD 751

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   +L             +I  V  +   +     K ++  MD L+ K+ SG++ + 
Sbjct: 752 KEQLAAKLASGQGRDLMAGLEEIGGVKVLCARVDAPSVKAMREAMDDLRSKLPSGVVAIA 811

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              +  K S+++ V++DL DRF A  L + +A  +GG G GGRP MAQ+GG N    D+
Sbjct: 812 SEQEGGKVSLIVAVSKDLHDRFTAPTLIKDAAAAVGGSG-GGRPDMAQAGGTNPAGIDE 869


>gi|238924198|ref|YP_002937714.1| alanyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|238875873|gb|ACR75580.1| alanyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
          Length = 886

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/917 (37%), Positives = 502/917 (54%), Gaps = 57/917 (6%)

Query: 1   MSNV---SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M      + +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P 
Sbjct: 1   MKKSYGVNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPP 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            + VTT QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+ 
Sbjct: 61  RRRVTTCQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEV 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGP 171
             L++ RLY ++Y ED+EAF +W K  G+  D+I R          DNFW     GPCGP
Sbjct: 117 LGLEKDRLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHG-AGPCGP 175

Query: 172 CSEIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           CSEI++D+GE    G P      + +R++E+WN VF QF          L   +IDTGMG
Sbjct: 176 CSEIYYDRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMG 235

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIA 287
           LER+A V+Q+  + +DID  K +     +++G KY     + V+ R+I DH+RSS+FLI+
Sbjct: 236 LERLAVVMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLIS 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG++P+NEGRGYVLRRI+RRA  + R LG     +  +   +  E    YPEL + K  I
Sbjct: 296 DGVMPSNEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
            + L  E+E+F KT+D+GL +L  +  H+  D  ++L+G+ AFKLYDT+G P+D+  +IL
Sbjct: 356 LKVLTQEEEKFAKTIDQGLGILADMEEHMKADGVKVLSGEDAFKLYDTYGFPVDLTAEIL 415

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G    D   F   +E QR +AR           +   ++  +    T+F GYD L  
Sbjct: 416 EEKGFT-YDEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEITTEFTGYDKLTD 474

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  ++ +  +    ++VE    G K  V+   TPFYA  G
Sbjct: 475 -----------------------TAEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMG 511

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ GD G    +     + D  K     + H   V  G++RT     L++D + R     
Sbjct: 512 GQQGDKGIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCR 571

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLL  AL  +LG+HV Q GS    +  RFD +H   +T+ ELK +ED VN+ I +
Sbjct: 572 NHSATHLLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINE 631

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T IM  ++A  +GA AL G KY ++VRVVS+     G  S   CGGTHV +T +I
Sbjct: 632 AIEVRTDIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I+SES + AG+RRIEAITG    ++    +++L+  A  +K +  N+  R+E +  
Sbjct: 687 KAFKILSESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLIA 746

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E + LQ  +   K +   + L         +  +  ++  +  VD   L+ + D+L++K+
Sbjct: 747 EMKALQSENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKL 806

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             G+I+L   S E K +++ + T+  +    +A +L +  A  +GGGG GGRP+MAQ+GG
Sbjct: 807 GEGVIVLAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVGGGG-GGRPNMAQAGG 864

Query: 880 PNGNKADQAIAGVASFL 896
            N      AIA V   L
Sbjct: 865 KNPAGIPDAIASVKDAL 881


>gi|291524925|emb|CBK90512.1| alanyl-tRNA synthetase [Eubacterium rectale DSM 17629]
          Length = 886

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/917 (37%), Positives = 503/917 (54%), Gaps = 57/917 (6%)

Query: 1   MSNV---SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M      + +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P 
Sbjct: 1   MKKSYGVNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPP 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            + VTT QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+ 
Sbjct: 61  RRRVTTCQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEV 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGP 171
             L++ RLY ++Y ED+EAF +W K  G+  D+I R          DNFW     GPCGP
Sbjct: 117 LGLEKDRLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHG-AGPCGP 175

Query: 172 CSEIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           CSEI++D+GE    G P      + +R++E+WN VF QF          L   +IDTGMG
Sbjct: 176 CSEIYYDRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMG 235

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIA 287
           LER+A V+Q+  + +DID  K +     +++G KY     + V+ R+I DH+RSS+FLI+
Sbjct: 236 LERLAVVMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLIS 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG++P+NEGRGYVLRRI+RRA  + R LG     +  +   +  E    YPEL + K  I
Sbjct: 296 DGVMPSNEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
            + L  E+E+F KT+D+GL +L  +  H+  D  ++L+G+ AFKLYDT+G P+D+  +IL
Sbjct: 356 LKVLTQEEEKFAKTIDQGLGILADMEEHMKADGVKVLSGEDAFKLYDTYGFPVDLTAEIL 415

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G    D   F   +E QR +AR           +   ++  +    T+F GYD L  
Sbjct: 416 EEKGFT-YDEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEITTEFTGYDKLTD 474

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  ++ +  +    ++VE    G K  V+   TPFYA  G
Sbjct: 475 -----------------------TAEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMG 511

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ GD G    +     + D  K     + H   V  G++RT     L++D + R     
Sbjct: 512 GQQGDKGIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCR 571

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLL  AL  +LG+HV Q GS    +  RFD +H   +T+ ELK +ED VN+ I +
Sbjct: 572 NHSATHLLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINE 631

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T IM  ++A  +GA AL G KY ++VRVVS+     G  S   CGGTHV +T +I
Sbjct: 632 AIEVRTDIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            +  I+SES + AG+RRIEAITG    ++    +++L+  A  +K +  N+  R+E +  
Sbjct: 687 KVFKILSESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLMA 746

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E + LQ  +   K +   + L         +  +  ++  +  VD   L+ + D+L++K+
Sbjct: 747 EMKALQSENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKL 806

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             G+I+L   S E K +++ + T+  +    +A +L +  A  +GGGG GGRP+MAQ+GG
Sbjct: 807 GEGVIVLAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVGGGG-GGRPNMAQAGG 864

Query: 880 PNGNKADQAIAGVASFL 896
            N      AIA V   L
Sbjct: 865 KNPAGIPDAIASVKDAL 881


>gi|319638074|ref|ZP_07992838.1| alanyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317400719|gb|EFV81376.1| alanyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 964

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/969 (37%), Positives = 516/969 (53%), Gaps = 83/969 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTT-ELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 60  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGP
Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+
Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG  +     L+P L  EMG+AYPEL + +  I E 
Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKEMGAAYPELKEKQTQIMEA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI------LNGDVAFKLYDTHGLPLDIMQDI 404
           LR+E+ RFG+TL++G+ L + VL+ +   ++              L    G+       +
Sbjct: 359 LRAEESRFGETLEKGMGLFNQVLNGMKFLKLESLLPQDGVGKPLTLKTADGVEFTAASRV 418

Query: 405 LCARGLAGIDII---SFNQALEEQRSRARAHSLGLGSGT----------TEKIWFSLKEK 451
             ++    I      S N+ +      A   +    +             + I  S    
Sbjct: 419 APSKKQIVIRPRVSGSLNEGMYIDLQAALETAHIPDAKKPFAEALNTYLMDNIANSKLVI 478

Query: 452 YGATQFIGYDLLRGSKFMKED--------------------------------------R 473
            G   F  YD       +  D                                       
Sbjct: 479 GGEHIFKLYDTYGFPYDLTADMARELGIELDEAGFEREMEAQRARARAAQSFKANAQLPY 538

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +    +          S V A+ + GE V+E   G +  VV D TPFYAE+GGQ+GD G 
Sbjct: 539 EGQDTEFKGYSERQTESKVLALYKDGEQVDELNEGDEGAVVIDFTPFYAESGGQVGDVGY 598

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 599 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 658

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 659 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 718

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +        S+ LCGGTHVS TG+I L  I+SE
Sbjct: 719 MSMEDAQKTGAMMLFGEKYGDEVRVLQMGG-----FSTELCGGTHVSRTGDIGLFKIISE 773

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQL 772
             I AG+RRIEAITG  A      Q+  +K + +  K     +V+ +++      + L+ 
Sbjct: 774 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 833

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A+ K +L V            +     ++  I    +  L+ ++  L  K +  I++L
Sbjct: 834 ELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEAD-AAALREIVTDLTGKSEQAIVLL 892

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           V +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K  +
Sbjct: 893 VAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLPE 950

Query: 888 AIAGVASFL 896
            +  V  ++
Sbjct: 951 MLVSVEGWV 959


>gi|166365301|ref|YP_001657574.1| alanyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|205830148|sp|B0JI84|SYA_MICAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|166087674|dbj|BAG02382.1| alanyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 874

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/904 (37%), Positives = 511/904 (56%), Gaps = 50/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL+FF    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+ P +   T
Sbjct: 6   SGSEIRQRFLDFFAARNHKILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKTPEFPRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  AW+L T+ F+L  
Sbjct: 65  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFNLPP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ EDEEAF +W+   G+ A +I ++   DNFW    TGPCGPCSEI++D    
Sbjct: 121 ERLVVSVFKEDEEAFAIWRDKIGIPAHRIQKMGEEDNFWVSGPTGPCGPCSEIYYDFHPE 180

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  N
Sbjct: 181 L-GDKTIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLANKNIDTGMGLERMAQILQKVAN 239

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   ++  + ++  + Y+  +     + +VI DH+RS   +IADGI  +N  RGY
Sbjct: 240 NYETDLIFPIVAEAARLAAIDYQKADEKTKVSLKVIGDHVRSVVHMIADGISASNTDRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +         S Y  + + + +I+  L  E+ RF 
Sbjct: 300 VLRRLIRRVVRHGRLIGIEGQFITKVAEVAIALSESVYGNVRERETVIKAELEREEARFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL+ +L    +   ++G  AF LYDT+G PL++ Q+I   +GL+ +D   F 
Sbjct: 360 ETLERGEKLLESILEK--EKSQISGVDAFTLYDTYGFPLELTQEIAEEQGLS-VDTAGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q +++Q+ R++A    +   T +     L E    T+F+GY  L+               
Sbjct: 417 QEMKKQQQRSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDLQ--------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++  G+ VE A +G +V+VV D+TPFYAE+GGQ+GD G   GD +
Sbjct: 461 --------ATATVTAVLVAGKTVESAAAGTEVQVVLDRTPFYAESGGQIGDKGYLTGDNL 512

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV +K  GIF+H   +ERGI+ T  ++   ID   RR+   NH+ATHLL  AL  
Sbjct: 513 LIRIEDV-QKESGIFIHFGRIERGIVTTGDTINAQIDRSCRRRAQANHTATHLLQSALKK 571

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   +SQ GS ++ D LRFD    +P+TS+EL+ +E+ +N  IA+       +M  E+A
Sbjct: 572 LVDGGISQAGSLVSFDRLRFDFNCPRPLTSSELQQVEEQINTWIAEAHDTQIAVMGLEEA 631

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRV+ +        S  LCGGTHV +T EI L  I+SE+ I AG
Sbjct: 632 KQKGAIAMFGEKYGSEVRVIDIPS-----VSMELCGGTHVKNTAEIGLFKIISETGIAAG 686

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G    ++L  +D+ +++L    KV    +  R+  +  E +  Q      K 
Sbjct: 687 IRRIEAVAGPAVLAYLNERDQVVRALCDRFKVKPLEIPDRITALQSELKGTQKQLEAVKQ 746

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +            I +   +   + ++D+  L +  + LQ+K+  G ++L       
Sbjct: 747 ELALNKSDALLSQAESIGEFKLLVASLGDIDANALMAAAERLQQKLGEGAVILASTPAAD 806

Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   +  ++      A       AK+  GG GGGRP++AQ+GG + +K  +A+A  
Sbjct: 807 KVSLVAAFSPRVIKDKGLQAGKFIGAIAKICAGG-GGGRPNLAQAGGRDASKLSEALAKA 865

Query: 893 ASFL 896
            S L
Sbjct: 866 KSQL 869


>gi|154502472|ref|ZP_02039532.1| hypothetical protein RUMGNA_00285 [Ruminococcus gnavus ATCC 29149]
 gi|153796868|gb|EDN79288.1| hypothetical protein RUMGNA_00285 [Ruminococcus gnavus ATCC 29149]
          Length = 879

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/906 (38%), Positives = 508/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y+EDEEAF++W K  G+ A++I R    DNFW    +GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYEEDEEAFEIWNKKMGIPAERIFRFGKADNFWEHG-SGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGHYSELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++   +Y  +    ++ RVI DH RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SIFDVDTLKALRDHICRLADTEYGKDAQADISIRVITDHTRSVTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I + +  E+++F 
Sbjct: 301 VLRRLLRRACRHGRLLGIEGSFIPELAQTVIEGSKDGYPELEEKKDFILKVIAKEEDQFN 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + +   +   L+G  AFKLYDT+G P+D+ ++IL  +G+  +D   
Sbjct: 361 KTIDQGLGILAEMTAKMEAEQTTTLSGADAFKLYDTYGFPIDLTKEILEEKGM-QVDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+ ++E QR  ARA          +   +   +    + F+GY+ L              
Sbjct: 420 FHASMEVQRKTARAARGETNYMGADVTVYESIDPSITSTFVGYENLAW------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +    EIVE    GQ+  V  ++TPFYA +GGQ  DTG     
Sbjct: 468 -----------KSPITVLTSDTEIVEALSDGQRGTVFAEETPFYATSGGQEADTGIIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D  K   G   H  +V +G+++T     L +D + R   + NHSATHLL  AL
Sbjct: 517 EGEFKVEDTVKLLGGKIGHVGVVIKGMIKTGDQAELCVDAEKRALSARNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG+HV Q GS +  D LRFD +H   +T+ EL+ +E+ VN+ I   LPV    M  E
Sbjct: 577 RTVLGTHVEQAGSSVNEDRLRFDFSHFSAMTAEELQKVEEIVNEQIVAGLPVKVENMPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV++     G +S   CGGTHV +T EIM   I+SES + 
Sbjct: 637 EARKTGAQALFGEKYGDVVRVVNM-----GDYSIEFCGGTHVKNTNEIMAFKILSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    ++KL   A  LK +  N+  ++  +  E + L       
Sbjct: 692 AGVRRIEALTSKGLIRYYDNLEKKLNEAAKVLKATPDNLAEKIAHLTAENKALHSEVESL 751

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  +          +I  V  ++  +  VD   L+ + D L++K+  G+++L     
Sbjct: 752 KSKLAQDAMGDVMDQVQEIKGVKLLAAEVDGVDMNGLRDLGDQLKEKLGEGVVVLASG-N 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K S+++  T+  +    +A +L +  A ++GGGG GGRP+MAQ+GG N     +A+  
Sbjct: 811 DGKVSLMVTATDAAMKQGAHAGNLVKAIAGLVGGGG-GGRPNMAQAGGKNPAGIQEALKK 869

Query: 892 VASFLK 897
            A  L+
Sbjct: 870 AAEALE 875


>gi|329926749|ref|ZP_08281157.1| alanine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328938949|gb|EGG35317.1| alanine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 875

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/911 (38%), Positives = 516/911 (56%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K  F G+ KP    +
Sbjct: 1   MKASEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K   
Sbjct: 61  ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L +TVY EDEEA+KLW +  GL  ++II++   DNFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPEKLSVTVYPEDEEAYKLWNEKIGLPKERIIKL--QDNFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           GE      P S      E ER++E+WNLVF QF          LP  +IDTG GLER A+
Sbjct: 174 GEGYDTEAPESEMFPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFAS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   +N+D DLF+ +IQ + ++ G+KY       +  +VI DH+R+ +F + DG+LP+
Sbjct: 234 ILQNVASNFDTDLFQPIIQKTAELAGVKYNEKTEYDIALKVIADHIRTVAFAVGDGVLPS 293

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ Y ++LG  +P M  L   +   MG  YPE+++ +  IE+ + +
Sbjct: 294 NEGRGYVIRRLLRRAVRYGKVLGLDKPFMYTLTGTVGDIMGVYYPEVVEKRAFIEKVIAT 353

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KTL  GL +L  V +   K    +++G  AFKLYDT+G P D+ +D     GL 
Sbjct: 354 EEEQFHKTLSDGLNILADVSAEAKKQGKSVISGSDAFKLYDTYGFPFDLTEDYASEHGLT 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A++EQR RARA      S   +     L +    ++F+GY+          
Sbjct: 414 -VDREGFDAAMKEQRDRARAARHETESMKVQGGV--LSDYTVKSEFVGYNDTVS------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V AIV      +    G+  +V+ D TPFYAE+GGQ+ D 
Sbjct: 465 -----------------EAKVLAIVSGDSFADSVSEGETCQVILDVTPFYAESGGQVSDQ 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G  +R ++  + K   G  VH   VE G L+   ++   +D   R  +  NH+ATH
Sbjct: 508 GMLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVKAQVDTAMRNDIVKNHTATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN+ + +++PVV 
Sbjct: 568 LLHKALKEVLGDHVNQAGSLVEPQRLRFDFSHFGSITQEELADIERRVNEQVWKSVPVVI 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T +I +  ++
Sbjct: 628 ERKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVDNTSQIGIFKLL 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ES I +G+RRIEA+TG+ A  HL GQ + LK  A  LK +  +V  R+E + ++ + L 
Sbjct: 683 GESGIGSGVRRIEAVTGRYAYEHLEGQMDLLKQAAGLLKSNLADVPKRIEGLNQQVKDLA 742

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   + +L   + S       ++ + + ++  +       L+ + D L+ K+   I++
Sbjct: 743 RENESLQGKLGAIEASQLTDKVKQVGNTSLLAAEVQAGSMDGLRGIADELKGKLPETILV 802

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L   + + K + ++ V ++L+   ++A  L +  A V GGGG GGRP MAQ+GG + +K 
Sbjct: 803 LGSKAGD-KVNFVVAVPQELVKQGYHAGKLVKEVASVCGGGG-GGRPDMAQAGGKDASKL 860

Query: 886 DQAIAGVASFL 896
            QA+      +
Sbjct: 861 AQALQHAEDLV 871


>gi|299530963|ref|ZP_07044376.1| alanyl-tRNA synthetase [Comamonas testosteroni S44]
 gi|298720920|gb|EFI61864.1| alanyl-tRNA synthetase [Comamonas testosteroni S44]
          Length = 874

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/909 (40%), Positives = 529/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+F+   GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   SVADIRKTFLDFYASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ +I+  W+LLTK F L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESIEWGWELLTKVFGLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175
            +L  TVY ED+EA+ +WK + GL A++IIRI         +DNFW MA+TGPCGPCSEI
Sbjct: 127 EKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGDNKGGKYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWN VFMQF+ +       LP   +DTGMGLER+A
Sbjct: 187 FYDHGEHIAGGPPGSPEEDGDRFIEIWNHVFMQFDMKEDGSVVKLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF+ LI+A+ + T  +    +  + +VI DH+R++SFL++DG++P+N
Sbjct: 247 AILQHVHSNYEIDLFQALIKAAGRETHTED--LSTPSLKVIADHIRATSFLVSDGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I   L++E
Sbjct: 305 EGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVADLVVQMGDAYPKLKEQEAHITSVLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  ++L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 365 EERFFETLANGMEILDSALA--GDVKVLPGDVAFKLHDTYGFPLDLSNDVARERGVT-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A++ Q+  ARA           K+  +L+    A  F GYD L           
Sbjct: 422 EAGFNAAMQHQKETARAAGKF-------KMDRALEYTGDANVFTGYDKL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 464 ------------AEAAKIVALYADGVSVNELQAGQNGVVVLDTTPFYAESGGQVGDQGVI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  + D  K    +F HH ++E G L+   ++   +D   R     NHS TH++H
Sbjct: 512 AAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVGDAVEAQVDTAVRAATMRNHSVTHIMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  +  N     R+M
Sbjct: 572 KALREVLGGHVQQKGSLVNAERTRFDFAHNAPVTAEQIREIEARVNAEVLANTATDARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHVS TG+I L  +V ES
Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVSRTGDIGLFKVVGES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIE ITG+ A ++L   +  +   A+  K     +  R+    ++ + L+   
Sbjct: 686 GVAAGVRRIEGITGENALAYLQSLESTVDQAAAAFKAPVAELTNRIGGALDQIKALEKEI 745

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L              +  V  ++  +   D+K L+  MD L+ K+ + +I+L  
Sbjct: 746 AALKGKLASSQGDELATQAADVNGVKVLAAKLEGADAKTLRDTMDKLKDKLGAAVIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT+    +  A +L    A+ +GG G GG+P MA +GG +      A+
Sbjct: 806 VDGD-KVQLAAGVTKAETAKVKAGELVNFVAQQVGGKG-GGKPDMAMAGGTDAAAVPAAL 863

Query: 890 AGVASFLKK 898
           A V ++  +
Sbjct: 864 ASVQAWAAE 872


>gi|238022662|ref|ZP_04603088.1| hypothetical protein GCWU000324_02571 [Kingella oralis ATCC 51147]
 gi|237865865|gb|EEP67001.1| hypothetical protein GCWU000324_02571 [Kingella oralis ATCC 51147]
          Length = 963

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/966 (36%), Positives = 513/966 (53%), Gaps = 79/966 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FFQ  GH+++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTNELRAKFLQFFQSKGHQIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+  I  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEVIPFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L +TVY ED+EA+ +W  + G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKEKLLVTVYAEDDEAYNIWHDVIGVPAERIVRIGDNKGSRYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG++
Sbjct: 241 RMAAVMQGVHSNYEIDLFQDLLKAVARETGTA-FSMEEPSLKVIADHIRSCSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+P L  EMG AYPEL + +  I E L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKNAFFYKLVPDLVKEMGGAYPELKEKQTHIMEVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQDIL 405
           R E+ RFG+TL++G+ L + V   +          +       +L    G+   ++    
Sbjct: 360 RGEEMRFGETLEKGMGLFNQVWDAMQFAKLESLLPMDGVGEPLRLTTADGVAFTVVSRNA 419

Query: 406 CARGLAGIDII-----------SFNQALEEQRSRARAHSLGLGSGT-TEKIWFSLKEKYG 453
                  +              +    + +++  A         G     I  S     G
Sbjct: 420 GNGKQIVVRPQVSGSLNESFAFNMEDVVTKEKPEAHRAYGEALQGYLKNNIANSKLIMSG 479

Query: 454 ATQFIGYD------------------LLRGSKFMKEDRKVLCQKPPI------------- 482
              F  YD                   L    F +E      +                 
Sbjct: 480 EHIFKLYDTYGFPYDLTADMARELGIELDEEGFEREMEAQRARARAAQNFKANAQVAYDG 539

Query: 483 -------DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       + + V A+ + GE V E  +G+   VV D TPFYAE+GGQ+GD G   
Sbjct: 540 AETQFHGYDKRSLDATVLALYRDGEAVNELNAGESGIVVLDHTPFYAESGGQVGDVGFIF 599

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               R ++ D QK    +  H   +  G L+   S+   +D   R  +  NHS THL+H 
Sbjct: 600 SGENRFEVEDTQKIKAAVHGHFGTLVSGSLKVGDSICAEVDNVVREAIMRNHSVTHLMHK 659

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS    +  RFD++H + IT+ E+  +E  VN  I QN+PV    M+
Sbjct: 660 ALRDVLGTHVEQKGSLQNAELTRFDISHPQAITAEEIAEVERRVNHAIMQNVPVRVETMS 719

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            EDA  SGA  L G KY D VRV+++     G +S+ LCGGTHV+ TG+I    I+SE  
Sbjct: 720 LEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKIISEGG 774

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIH 774
           I AGIRR+EAITGQ A   +  Q+  +K   + +K     +++ +++      + L+   
Sbjct: 775 IAAGIRRVEAITGQAALDWVQNQENLIKEAVNEVKAQGAKDLLAKIQTALAHSKALEKEL 834

Query: 775 AKRKLQLNVEDLSCHKIADVNF----MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           A+ K +L V   +      V      +     E D+  L+ ++  L  K    I++L+  
Sbjct: 835 ARAKAELAVHAGAKLLDNAVTVGAARLVAAQIEADAAALRDIVTDLTSK-GDNIVVLLAA 893

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + K ++   V++ +  +  A DL + +A+ + GG GGGRP +AQ+GG +  K    I 
Sbjct: 894 VNDGKIALCAGVSKAMTAKVKAGDLVKHAAEQI-GGKGGGRPDLAQAGGSDVEKLPAMIE 952

Query: 891 GVASFL 896
            V  ++
Sbjct: 953 SVKDWV 958


>gi|291545954|emb|CBL19062.1| alanyl-tRNA synthetase [Ruminococcus sp. SR1/5]
          Length = 880

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/912 (39%), Positives = 519/912 (56%), Gaps = 50/912 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    V+ +R  FL+F +  GH ++ S SL+P  D +L+  N+GM P K  FTG EKP  
Sbjct: 1   MKKYGVNELRKMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEKPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             VTT QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI  +W+ LT+  
Sbjct: 61  TRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIHWSWEFLTEVV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY ++Y +DEEAF +W K  G+ +++I R    DNFW     GPCGPCSEI++D
Sbjct: 117 GLDADRLYPSIYLDDEEAFNIWNKEVGIPSERIFRFGKEDNFWEHG-AGPCGPCSEIYYD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G PG     + +RY+E+WN VF QFE         L + +IDTGMGLER+A V
Sbjct: 176 RGEKYGCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D    L     ++   +Y     + V+ R+I DH+RS++F+I+DGI+P N
Sbjct: 236 VQDVDSIFDVDTICALRNLVCEIAHKEYEKNYADDVSIRLITDHIRSATFMISDGIMPTN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG     +  L   +     + YPEL + K  I   L +E
Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIEGTFLAKLSAQVIESSKAGYPELEEKKEFIFRVLTNE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           + +F KT+D+GL +L  +   + K  ++ L+GD AFKLYDT+G PLD+ ++IL  +G  G
Sbjct: 356 ENQFNKTIDQGLRILSDMEEDMKKAGEKTLSGDNAFKLYDTYGFPLDLTKEILEEKGY-G 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR +AR           +   +   +    T+F+GYD L         
Sbjct: 415 IDEEGFQKAMEEQRVKARTAREVTNYMGADATVYDDIDVNVTTEFVGYDHL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  +  + EIV+    GQK  V  +QTPFYA  GGQ GDTG
Sbjct: 466 --------------TFDSKVTVLTTETEIVDSLTEGQKGTVFVEQTPFYATMGGQEGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  +  + D  K   G F H   +E G++ +  ++ L ++ + R+    NHSATHL
Sbjct: 512 VIETANGKFVVEDTIKLRGGKFGHVGHMESGMISSGETVSLKVNEEARKDTEKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +TPD LRFD  H + +T+ EL++ E+ VN  I   L V T 
Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFQAMTAEELQATEELVNKEIQAGLDVHTD 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E+A  SGA AL G KY+ +VRVVS+     G  S  LCGGTHV +T  IML  IVS
Sbjct: 632 VMDVEEAKKSGAMALFGEKYDQKVRVVSM-----GDFSKELCGGTHVKNTSSIMLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG+RRIEA+TG+    +   Q+E L   A  LK +   VV ++  +  E + LQ 
Sbjct: 687 ESGIAAGVRRIEALTGKAVIEYYRKQEELLHEAAKALKANTAEVVEKISHLQAEVKALQS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +     L        ++  V  ++  +  VD   L+ + D L++++  G+++L
Sbjct: 747 ENESLKSKAAQSALGDVMDKVVEVNGVKLLAAKVEGVDMNGLRDLGDKLKEQLGEGVVLL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K ++L + T+       +A +L +  A ++GGGG GGRP+MAQ+GG N  KA 
Sbjct: 807 AAV-NDGKVNLLAMATDAAQKAGAHAGNLIKAVATIVGGGG-GGRPNMAQAGGKNPEKAQ 864

Query: 887 QAIAGVASFLKK 898
           +A+   A  L+K
Sbjct: 865 EAMDAAAGILEK 876


>gi|291529066|emb|CBK94652.1| alanyl-tRNA synthetase [Eubacterium rectale M104/1]
          Length = 886

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/917 (37%), Positives = 503/917 (54%), Gaps = 57/917 (6%)

Query: 1   MSNV---SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M      + +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P 
Sbjct: 1   MKKSYGVNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPP 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            + VTT QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+ 
Sbjct: 61  RRRVTTCQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEV 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGP 171
             L++ RLY ++Y ED+EAF +W K  G+  D+I R          DNFW     GPCGP
Sbjct: 117 LGLEKDRLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHG-AGPCGP 175

Query: 172 CSEIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           CSEI++D+GE    G P      + +R++E+WN VF QF          L   +IDTGMG
Sbjct: 176 CSEIYYDRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMG 235

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIA 287
           LER+A V+Q+  + +DID  K +     +++G KY     + V+ R+I DH+RSS+FLI+
Sbjct: 236 LERLAVVMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLIS 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG++P+NEGRGYVLRRI+RRA  + R LG     +  +   +  E    YPEL + K  I
Sbjct: 296 DGVMPSNEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
            + L  E+E+F KT+D+GL +L  +  H+  D  ++L+G+ AFKLYDT+G P+D+  +IL
Sbjct: 356 LKVLTQEEEKFAKTIDQGLGILADMEEHMKADGVKVLSGENAFKLYDTYGFPVDLTAEIL 415

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G    D   F   +E QR +AR           +   ++  +    T+F GYD L  
Sbjct: 416 EEKGFT-YDEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEITTEFTGYDKLTD 474

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  ++ +  +    ++VE    G K  V+   TPFYA  G
Sbjct: 475 -----------------------TAEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMG 511

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ GD G    +     + D  K     + H   V  G++RT     L++D + R     
Sbjct: 512 GQQGDKGIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCR 571

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLL  AL  +LG+HV Q GS    +  RFD +H   +T+ ELK +ED VN+ I +
Sbjct: 572 NHSATHLLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINE 631

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T IM  ++A  +GA AL G KY ++VRVVS+     G  S   CGGTHV +T +I
Sbjct: 632 AIEVRTDIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            +  I+SES + AG+RRIEAITG    ++    +++L+  A  +K +  N+  R+E +  
Sbjct: 687 KVFKILSESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLMA 746

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E + LQ  +   K +   + L         +  +  ++  +  VD   L+ + D+L++K+
Sbjct: 747 EMKALQSENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKL 806

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             G+I+L   S E K +++ + T+  +    +A +L +  A  +GGGG GGRP+MAQ+GG
Sbjct: 807 GEGVIVLAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVGGGG-GGRPNMAQAGG 864

Query: 880 PNGNKADQAIAGVASFL 896
            N      AIA V   L
Sbjct: 865 KNPAGIPDAIASVKDAL 881


>gi|261405443|ref|YP_003241684.1| alanyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261281906|gb|ACX63877.1| alanyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 875

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/911 (38%), Positives = 517/911 (56%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K  F G+ KP    +
Sbjct: 1   MKASEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K   
Sbjct: 61  ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L +TVY EDEEA+KLW +  GL  ++II++   DNFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPEKLSVTVYPEDEEAYKLWNEKIGLPKERIIKL--QDNFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           GE      P S      E ER++E+WNLVF QF          LP  +IDTG GLER A+
Sbjct: 174 GEGYDTEAPESEMFPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFAS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   +N+D DLF+ +IQ + ++ G+KY       +  +VI DH+R+ +F + DG+LP+
Sbjct: 234 ILQNVASNFDTDLFQPIIQKTAELAGVKYNEKTEYDIALKVIADHIRTVAFAVGDGVLPS 293

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ Y ++LG  +P M  L   +   MG  YPE+++ +  IE+ + +
Sbjct: 294 NEGRGYVIRRLLRRAVRYGKVLGLDKPFMYTLTGTVGDIMGVYYPEVVEKRAFIEKVIAT 353

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KTL  GL +L  V +   K    +++G+ AFKLYDT+G P D+ +D     GL 
Sbjct: 354 EEEQFHKTLSDGLNILADVSAEAKKQGKSVISGNDAFKLYDTYGFPFDLTEDYASEHGLT 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A++EQR RARA      S   +     L +    ++F+GY+          
Sbjct: 414 -VDREGFDAAMKEQRDRARAARHETESMKVQGGV--LSDYTVKSEFVGYNDTVS------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V AIV      +    G+  +V+ D TPFYAE+GGQ+ D 
Sbjct: 465 -----------------EAKVLAIVSGDSFADSVSEGETCQVILDVTPFYAESGGQVSDQ 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G  +R ++  + K   G  VH   VE G L+   ++   +D   R  +  NH+ATH
Sbjct: 508 GMLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVKAQVDSAMRNDIVKNHTATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN+ + +++PVV 
Sbjct: 568 LLHKALKEVLGEHVNQAGSLVEPQRLRFDFSHFGSITQEELADIERRVNEQVWKSVPVVI 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T +I +  ++
Sbjct: 628 ERKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVDNTSQIGIFKLL 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ES I +G+RRIEA+TG+ A  HL GQ + LK  A  LK +  +V  R+E + ++ + L 
Sbjct: 683 GESGIGSGVRRIEAVTGRYAYEHLEGQMDLLKQAAGLLKSNLADVPKRIEGLNQQVKDLA 742

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   + +L   + S       ++ + + ++  +       L+ + D L+ K+   I++
Sbjct: 743 RENESLQGKLGAIEASQLTDKVKQVGNTSLLAAEVQAGSMDGLRGIADELKGKLPETILV 802

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L   + + K + ++ V ++L+   ++A  L +  A V GGGG GGRP MAQ+GG + +K 
Sbjct: 803 LGSKAGD-KVNFVVAVPQELVKQGYHAGKLVKEVASVCGGGG-GGRPDMAQAGGKDASKL 860

Query: 886 DQAIAGVASFL 896
            QA+      +
Sbjct: 861 AQALQHAEDLV 871


>gi|322382967|ref|ZP_08056799.1| alanyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153087|gb|EFX45545.1| alanyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 882

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/912 (37%), Positives = 521/912 (57%), Gaps = 54/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L FF   GH++ PS+SL+P ND +L++ N+GM P K  F G+  P    +
Sbjct: 9   MKASEIRSKWLNFFASKGHKVEPSASLVPHNDASLLWINAGMAPLKPYFDGRIIPENPRI 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE+AI  AW+ LT  K   
Sbjct: 69  VNAQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEQAITWAWEFLTDPKWIG 124

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            +  R+ +TVY ED+EAF LW    GL  ++I ++   DNFW + E GPCGPC+EIF+D+
Sbjct: 125 FEPERISVTVYKEDQEAFDLWHNKIGLPEERIYKLGD-DNFWGIGE-GPCGPCTEIFYDR 182

Query: 180 GECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           GE              E ER++E+WNLVF QF          LP  +IDTG GLER A +
Sbjct: 183 GEAYGDLSDPECWPGGENERFLEVWNLVFSQFNHNKDGSYTPLPSKNIDTGAGLERFAAI 242

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   +N+D DLF+ +IQ +  +  + Y+      +  +VI DH+R+ +F + DG+LP+N
Sbjct: 243 LQNVDSNFDTDLFQPMIQKTCGLAKVSYKEKEETDIALKVIADHIRTVAFSVGDGVLPSN 302

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV+RR++RRA+ Y ++LG  +P M  L+PALC  MG  Y E+++ +  IE+ +R+E
Sbjct: 303 EGRGYVIRRLLRRAVRYGKVLGMDKPFMYQLVPALCDVMGMYYTEIVEKQEFIEKIIRTE 362

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  GL +L  +++   K  +  + G  AFKLYDT+G P+D+ +D    +G+  
Sbjct: 363 EERFHETLSDGLEILSHLVAEARKKGMTQIGGQDAFKLYDTYGFPIDLTEDFAAEQGMT- 421

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  +++EQR RARA      S   +     L +    ++F+GY+ L         
Sbjct: 422 VDKEGFEASMQEQRERARAARQDTDSMNVQG--GPLADFTDKSEFVGYNDL--------- 470

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          V + + A++    +V+    G+  +VV D+TPFYAE+GGQ+ D G
Sbjct: 471 --------------VVPAKIIALMHNNTMVDIVNEGEICQVVLDRTPFYAESGGQVSDKG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                   L++ +V K   G  VH  +VE+G  R       ++D   R  +  NH+ATHL
Sbjct: 517 TIRYGETLLRVEEVGKAPHGQHVHTVLVEKGTARVGAETEASVDPSLRGDIVKNHTATHL 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL+ +LG HV+Q GS +    LRFD +H   IT  EL+ +E  VN+ I QN+PV+ +
Sbjct: 577 LHKALNEVLGEHVNQAGSLVAQQRLRFDFSHFGSITEEELQEVERKVNEQIWQNIPVIIK 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A A GA AL G KY   V          G +S  LCGG HV++T EI    IVS
Sbjct: 637 LMPIDEAKAMGAMALFGEKYGKVV-----RVVRVGDYSLELCGGCHVANTAEIGQFKIVS 691

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I +G+RRIEA+ G+ A +++  Q   LK  A  LK    +V  RV+ I  + ++L  
Sbjct: 692 ESGIGSGVRRIEAVAGKHAYTYMEDQIRLLKETAVLLKSKVADVPKRVDSILSQMKELNR 751

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                + +L+  +         ++  +  ++  ++  D   L+ + D ++ +I SG+I+L
Sbjct: 752 EIESLRSKLSHIEAGSLTDQIKEVGGIKLLAAEVNAADMDSLRQLADEMKAQIGSGVIVL 811

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              S + K +++  VT+DL  +  +A  + + +A + GGGG GGRP MAQ+GG + +K  
Sbjct: 812 GAASGQ-KVNLVAAVTQDLTKKGLHAGQIVKAAASICGGGG-GGRPDMAQAGGKDPSKLK 869

Query: 887 QAIAGVASFLKK 898
           +A+  V +++++
Sbjct: 870 EALLYVETYIQQ 881


>gi|159030141|emb|CAO91033.1| alaS [Microcystis aeruginosa PCC 7806]
          Length = 878

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/904 (37%), Positives = 511/904 (56%), Gaps = 50/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL+FF    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+ P +   T
Sbjct: 10  SGSEIRQRFLDFFAARNHKILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKTPEFPRAT 68

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  AW+L T+ F+L  
Sbjct: 69  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFNLPP 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ EDEEAF +W+   G+ A +I ++   DNFW    TGPCGPCSEI++D    
Sbjct: 125 ERLVVSVFKEDEEAFAIWRDKIGIPAHRIQKMGEADNFWVSGPTGPCGPCSEIYYDFHPE 184

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  N
Sbjct: 185 L-GDKTIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLANKNIDTGMGLERMAQILQKVAN 243

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   ++  + ++  + Y+  +     + +VI DH+RS   +IADGI  +N  RGY
Sbjct: 244 NYETDLIFPIVAEAARLAAIDYQKADEKTKVSLKVIGDHVRSVVHMIADGISASNTDRGY 303

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +         S Y  + + + +I+  L  E+ RF 
Sbjct: 304 VLRRLIRRVVRHGRLIGIEGQFITKVAEVAIALSESVYGNVRERETVIKAELEREEARFL 363

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL+ +L    +   ++G  AF LYDT+G PL++ Q+I   +GL+ +D   F 
Sbjct: 364 ETLERGEKLLESILEK--EKSQISGVDAFTLYDTYGFPLELTQEIAEEQGLS-VDTAGFE 420

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q +++Q+ R++A    +   T +     L E    T+F+GY  L+               
Sbjct: 421 QEMKKQQQRSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDLQ--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++  G+ VE A +G +V+VV DQTPFYAE+GGQ+GD G   GD +
Sbjct: 465 --------ATATVTAVLVAGKTVESAAAGTEVQVVLDQTPFYAESGGQIGDKGYLTGDNL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ DV +K  GIF+H   +ERG++ T  ++   ID   RR+   NH+ATHLL  AL  
Sbjct: 517 LIRVEDV-QKESGIFIHFGRIERGVVTTGDTINAQIDRSCRRRAQANHTATHLLQSALKK 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++ + +SQ GS ++ + LRFD    +P+TSAEL+ +E+ +N  IA+       +M  E+A
Sbjct: 576 LVDAGISQAGSLVSFERLRFDFNCPRPLTSAELQQVEEQINTWIAEAHDTQIAVMGLEEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRV+ +        S  LCGGTHV +T EI L  I+SE+ I AG
Sbjct: 636 KQKGAIAMFGEKYGSEVRVIDIPR-----VSMELCGGTHVKNTAEIGLFKIISETGIAAG 690

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G    ++L  +D+ ++ L    KV    +  R+  +  E +  Q      K 
Sbjct: 691 IRRIEAVAGPAVLAYLNERDQVVRDLCDRFKVKPLEIPDRITALQSELKGTQKQLEAVKQ 750

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +            I +   +   + ++D+  L +  + LQ+K+  G ++L       
Sbjct: 751 ELALNKSDALLSQAESIGEFKLLVASLGDIDANALMAAAERLQQKLGEGAVILASTPAAD 810

Query: 835 KASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   +  ++      A       AK+  GG GGGRP++AQ+GG + +K  +A+A  
Sbjct: 811 KVSLVAAFSPRVIKDRGLQAGKFIGAIAKICAGG-GGGRPNLAQAGGRDASKLSEALAKA 869

Query: 893 ASFL 896
            S L
Sbjct: 870 KSQL 873


>gi|323705255|ref|ZP_08116830.1| alanyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535157|gb|EGB24933.1| alanyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 877

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/907 (39%), Positives = 555/907 (61%), Gaps = 51/907 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF+  GH  LPS SL+P ND +L+  N+GM P K  FTG+E P  + VTT 
Sbjct: 7   NEIREKYLSFFESKGHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGKEIPPSRRVTTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +TK  +L + R
Sbjct: 67  QKCIRT----PDIDRVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTKVLELPEDR 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++T+Y+ D+EAF++W K+ GL  ++I+R+   DNFW +  TGPCGPCSEI+FD+GE   
Sbjct: 123 LWVTIYENDDEAFEIWNKVVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEDKG 181

Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P      + +R+IE WNLVF QF++  +     LPK +IDTGMGLER+AT++QE  +
Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFDKDAEGNYNPLPKPNIDTGMGLERIATIMQEVDS 241

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D+ + +     ++ G+KY  +  + V+ RVI DH+R  +F+I+DGILP+NEGRGYV
Sbjct: 242 IFDVDVIRGITDYVGKMAGVKYGADKKSDVSLRVITDHIRGVTFMISDGILPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA  Y +LLG   P +  ++  +      AYPE+ + K  I++ ++ E+ERF +
Sbjct: 302 LRRLLRRAARYGKLLGLDRPFLYDVVDVVVEHYKGAYPEIQERKEYIKKVIKKEEERFKE 361

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+GL +LDG ++ L      +L G  AFKLYDT+G P+++ ++IL   G++ +D   +
Sbjct: 362 TIDQGLDILDGYINDLKASGKNVLEGSKAFKLYDTYGFPIELTKEILSESGMS-VDEDGY 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + LE QR RAR+      +   + I+ ++K+    T+F+GY+  +              
Sbjct: 421 QKELENQRLRARSSRKEDNALWEKDIYSTMKDI--ETKFVGYEAFKSD------------ 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + V AI++  E+V  A +G++V ++ D TPFYAE+GGQ+GD+G    + 
Sbjct: 467 -----------AKVLAIIKDDELVNSAEAGEEVNIILDMTPFYAESGGQVGDSGIIKSED 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + + I D +K     FVH   +ERGIL    ++   ID +NR   + NH+ATHLLH AL 
Sbjct: 516 VYINIKDCKKAGGNKFVHIGTIERGILNVGDTVEAIIDEKNRMSTARNHTATHLLHSALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +G HV Q GS +TPD LRFD TH + +T+ E+K IED VN+ I +++ V   IM++++
Sbjct: 576 KFIGDHVHQAGSLVTPDRLRFDFTHYQALTAYEIKMIEDEVNEKIYESIGVSIDIMSQDE 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI  GA AL   KY D VRVV++       +S  LCGGTHV++T +I    I++ES + A
Sbjct: 636 AIKKGAMALFQEKYGDVVRVVNI-----SDYSKELCGGTHVTNTIQIGAFKIIAESGVAA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG  A   L  + E + ++   LKV++ ++V R+ ++ +  + L+    + K
Sbjct: 691 GVRRIEAVTGLGALEFLNKKGELISNIEQILKVNEKDIVDRIADLSQTIKDLERQLEQLK 750

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            ++ +        S   I  + F+S  ++++D  ELK + D L+ +++S +I+L  I ++
Sbjct: 751 SKVVLSMSDKLINSAEDINGIKFVSATLNDLDVDELKMMGDILKDRLKSTVIILATI-RD 809

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +K + + + T+D ++R  N  ++ R   + +  G GGGR  MAQ  G N  K + A+   
Sbjct: 810 EKINFVGMATKDAIERGINVGNIIREICQ-VADGKGGGRADMAQGVGNNLEKINIALETS 868

Query: 893 AS-FLKK 898
            S F++K
Sbjct: 869 RSLFIEK 875


>gi|326339235|gb|EGD63050.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
          Length = 833

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/869 (43%), Positives = 529/869 (60%), Gaps = 56/869 (6%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157
           K  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N   
Sbjct: 61  KHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGA 120

Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQN 212
               DNFW M +TGPCGPC+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q 
Sbjct: 121 PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQA 180

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + 
Sbjct: 181 DGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSL 238

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   
Sbjct: 239 RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDV 298

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYD
Sbjct: 299 MGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYD 357

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+  D+   R +  +D   F  A+EEQR RAR              + ++    
Sbjct: 358 TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVD 410

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A++F GYD L                        ++  V A+   G+ V+   +GQ+  
Sbjct: 411 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAINAGQEAV 447

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV DQTPFYAE+GGQ+GD G   G      + D QK       H   +  G L+   ++ 
Sbjct: 448 VVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQ 506

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ +   E+
Sbjct: 507 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEI 566

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           +++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     G  S+ 
Sbjct: 567 RAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTE 621

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A  LK  
Sbjct: 622 LCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGD 681

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSK 807
             N+  +V  + E  R+L+    + K Q   ++          +  V  +   +S V+ K
Sbjct: 682 SNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPK 741

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+ + GG 
Sbjct: 742 MLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGK 799

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGGRP MAQ+GG +      A+A V  ++
Sbjct: 800 GGGRPDMAQAGGTDAAALPAALASVKGWV 828


>gi|71083347|ref|YP_266066.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062]
 gi|83305853|sp|Q4FMX6|SYA_PELUB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71062460|gb|AAZ21463.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 889

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/913 (44%), Positives = 582/913 (63%), Gaps = 44/913 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IRTTFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKNIFTG EK  Y   
Sbjct: 4   KTLNQIRTTFLDYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNIFTGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +D
Sbjct: 64  TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEEAISYAWNLITKEFGID 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY  DEEAF  WKKI+G S D+II+I T+DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 124 KNRLYVTVYHNDEEAFNFWKKIAGFSDDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHGD 183

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GGLPG+ +E+G R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLER+A +LQ  
Sbjct: 184 HLEGGLPGTKNEDGNRFIEIWNLVFMQYEQISKDKRINLPKPSVDTGMGLERIAALLQGT 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ D FK LI ++     +K   +N  + RVI DHLR+SSFL+A+G+LP+NEGRGYV
Sbjct: 244 HDNYETDHFKKLILSASDTLNVKVTDDNQSSFRVIADHLRASSFLLAEGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRR M ++ LLG  +P+  ++   L  EM + YPEL +A+ LI+ETL++E+E+F  
Sbjct: 304 LRRIMRRGMRHSHLLGSKKPVFYNIFKTLLEEMSNNYPELERAQSLIKETLKTEEEKFLV 363

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            LDRG+ +L+  L  +   +IL G+VAFKLYDT G PLD+ +DIL  + +  +D   F+ 
Sbjct: 364 LLDRGIKILNEELEKVE--KILPGEVAFKLYDTFGFPLDLTEDILKNKSMT-VDGEKFDL 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++E +  A+ +  G G  + ++IWF +K++ GAT F+GY                    
Sbjct: 421 LMKESKKLAKKNWKGSGDSSVDQIWFDIKDRLGATDFLGY-------------------- 460

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               T+    +V  I++  + V++     +  ++ +QTPFY E+GGQ+ DTG    +   
Sbjct: 461 ---STDKAEGVVTLILKNNKEVQDLQENDEGIIITNQTPFYGESGGQVADTGIISKEAFE 517

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            +++DVQKK   +FVH+  V+RG ++ + ++ L ID Q R  +   HSATHLLH AL  +
Sbjct: 518 FEVSDVQKKLGDLFVHYGKVKRGSVKLKDNVELKIDTQRRNNIRAYHSATHLLHEALRRV 577

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  D LRFD +H KPI+  E++ IE  VN II +   V TRIM  ++A+
Sbjct: 578 LGEHVTQKGSLVQSDRLRFDFSHMKPISDEEIRKIEHYVNSIIEKKSEVKTRIMTPKEAV 637

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY D VRV+S+  E+G   S+ LCGGTHV +T +I    I+S+SSI AG+
Sbjct: 638 ENGALALFGEKYGDEVRVLSMGDEEGKFFSTELCGGTHVVNTADIGKFKIISQSSIAAGV 697

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--------WEE---YRK 769
           RR+EA+   +    L  ++ +        +     +  ++ ++         ++    + 
Sbjct: 698 RRVEALRDAQLIDFLKEKENQSNLSDQKNEAVIKELETKIIKLGGKPNLQNKDQVTLIKD 757

Query: 770 LQLIHAKRKLQLNVEDLSCHKIAD-----VNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L     +  +   ++D   +KI D            I ++  K+L+ ++D  +K+I  G+
Sbjct: 758 LNRQFDQLSVISILKDKDKNKINDQTINGFKVRFQNIIDLPFKDLRKLIDEGKKEIGEGL 817

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +++  I  + K  + + VT+ L  +F+AV + R  ++V+GG GGGGR   AQ+GG   +K
Sbjct: 818 VVIYAI-NDNKVGLAVGVTKTLEKKFDAVKIVRAGSEVIGGKGGGGRADFAQAGGTLPDK 876

Query: 885 ADQAIAGVASFLK 897
            +++   +   + 
Sbjct: 877 IEESFENIKKLIN 889


>gi|320197699|gb|EFW72308.1| Alanyl-tRNA synthetase [Escherichia coli EC4100B]
          Length = 833

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/869 (43%), Positives = 529/869 (60%), Gaps = 56/869 (6%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157
           K  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N   
Sbjct: 61  KHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGA 120

Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQN 212
               DNFW M +TGPCGPC+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q 
Sbjct: 121 PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQA 180

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + 
Sbjct: 181 DGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSL 238

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   
Sbjct: 239 RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDV 298

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYD
Sbjct: 299 MGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYD 357

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+  D+   R +  +D   F  A+EEQR RAR              + ++    
Sbjct: 358 TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVD 410

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A++F GYD L                        ++  V A+   G+ V+   +GQ+  
Sbjct: 411 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAINAGQEAV 447

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV DQTPFYAE+GGQ+GD G   G      + D QK       H   +  G L+   ++ 
Sbjct: 448 VVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLAAGSLKVGDAVQ 506

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ +   E+
Sbjct: 507 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEI 566

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           +++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     G  S+ 
Sbjct: 567 RAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTE 621

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A  LK  
Sbjct: 622 LCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGD 681

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSK 807
             N+  +V  + E  R+L+    + K Q   ++          +  V  +   +S V+ K
Sbjct: 682 SNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPK 741

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+ + GG 
Sbjct: 742 MLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGK 799

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGGRP MAQ+GG +      A+A V  ++
Sbjct: 800 GGGRPDMAQAGGTDAAALPAALASVKGWV 828


>gi|20807697|ref|NP_622868.1| alanyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|22096187|sp|Q8RAH4|SYA_THETN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|20516247|gb|AAM24472.1| Alanyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 878

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/906 (38%), Positives = 534/906 (58%), Gaps = 52/906 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF+  GH  LPS SL+P ND +L+  NSGM P K  FTG+E P  + VTT 
Sbjct: 7   NEIREKFLSFFESKGHLRLPSFSLVPKNDKSLLLINSGMAPLKPYFTGKETPPSRRVTTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ + +   L   R
Sbjct: 67  QRCIRT----PDIERVGKTARHATFFEMLGNFSFGDYFKKEAIPWAWEFVAEVLKLPVDR 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++T+Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGPCSEI+FD+GE   
Sbjct: 123 LWVTIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEKG 181

Query: 185 GGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
            G P      ++ +RY+E WNLVF QF +  +     LP  +IDTGMGLER+A ++Q   
Sbjct: 182 CGKPDCGIGCDDCDRYVEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIAAIMQGVD 241

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +D+D+ + +      +  ++Y  + +  V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 242 TIFDVDVIRGIRDFISDLAEVEYGKDADKDVSIRVITDHIRGITFMISDGILPSNEGRGY 301

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I++ ++ E+ERF 
Sbjct: 302 VLRRLLRRAARHGKLLGLNDAFLYKVVDSVVENYGGAYPEIIERKDYIKKIIKLEEERFK 361

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL +L   ++ L      +L G  AFKLYDT+G PLD+ ++IL   G+  ID   
Sbjct: 362 ETVDQGLAILQDYINELKAQGKTVLEGAKAFKLYDTYGFPLDLTKEILQESGIT-IDEEG 420

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + + LE+QR RAR+      S   + I+ +L +   +T+F+GY++               
Sbjct: 421 YKEELEKQRVRARSSRKEDNSLWEQDIYSTLGDI--STKFVGYEVYES------------ 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V AIV+  E+VE+A +G  V ++ D TPFYAE+GGQ+GD+G    +
Sbjct: 467 -----------EAKVLAIVKDNEVVEQAEAGDDVSIILDVTPFYAESGGQVGDSGVIEEE 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +++ D +K     F+H   VERG++     +V  ID   R+  + NH+ATHLLH AL
Sbjct: 516 DTLIKVNDCKKVGNK-FIHIGTVERGLISVGDKVVAKIDVSKRKGAARNHTATHLLHKAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q+GS +  D LRFD +H + ++  ELK IE+ VN+ I + LPVV    N E
Sbjct: 575 KEVLGDHVNQSGSLVAYDRLRFDFSHYQAVSKEELKKIEERVNEKIYEQLPVVVEEKNYE 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA+  GA AL   KY D+VRVV +       +S  LCGGTHV +T EI +  IVSES++ 
Sbjct: 635 DALKEGAVALFTEKYGDKVRVVKI-----DDYSMELCGGTHVKNTSEIGIFKIVSESAVG 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG  A  +L  Q E L  ++  LK  +  VV ++E + +  +  +      
Sbjct: 690 AGLRRIEALTGIEAIKYLNEQKEILDRVSETLKAQEKEVVSKIENLQQSLKDKEREIEGL 749

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++          S   +  V  ++  + + D + LK++ D L+ +++S  ++L   SK
Sbjct: 750 KTKIASILAETLIDSAISVDGVKVIASRVEDYDMEALKTLGDILKDRLKSAAVILASSSK 809

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + KA  + + T+D +++  N   + + +  +   G GGGR  MAQ  G N +K  +A+  
Sbjct: 810 D-KALFVGMATKDAVEKGVNMGAVIKETCSIAE-GNGGGRAEMAQGTGKNISKVKEALEK 867

Query: 892 VASFLK 897
               +K
Sbjct: 868 AIEIVK 873


>gi|307265211|ref|ZP_07546770.1| alanyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326390157|ref|ZP_08211718.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|306919833|gb|EFN50048.1| alanyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325993805|gb|EGD52236.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 877

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/909 (38%), Positives = 527/909 (57%), Gaps = 55/909 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + VTT 
Sbjct: 7   NEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L   R
Sbjct: 67  QRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEILKLPVDR 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++++Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGP SEI+FD+GE   
Sbjct: 123 LWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEKG 181

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P      + +R+IE WNLVF QF +  +     LP  +IDTGMGLER+AT++Q   +
Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFNKDERGNYHRLPNPNIDTGMGLERIATIMQGVDS 241

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D+ + +     ++  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGYV
Sbjct: 242 IFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I+  ++ E+ERF +
Sbjct: 302 LRRLLRRAARHGKLLGINDTFLYKVVDSVIENYGEAYPEIIERKDYIKRIIKLEEERFKE 361

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+GL +L   +S L      +L G  AFKLYDT+G PLD+ ++IL   G+  +D   +
Sbjct: 362 TIDQGLTILQDYISELKVQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEEGY 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + LE+QR RAR+      S   + I+ +L +    T+F+GYD                 
Sbjct: 421 TKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDTYESD------------ 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S V AIV+  E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    + 
Sbjct: 467 -----------SKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDKGVLENEN 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++ D +K  +        +ERG++     +   ID  +RR  + NH+ATHLLH AL 
Sbjct: 516 ALIKVNDCKKIGDKFIHT-GTIERGLISVGDEVKAQIDVVSRRNAARNHTATHLLHKALK 574

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       ++
Sbjct: 575 EILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTYDE 634

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  GA AL   KY D+VRVV +       +S  LCGGTHV +T EI +  IVSES++ A
Sbjct: 635 AVKEGAVALFTEKYGDKVRVVKI-----DDYSMELCGGTHVKNTNEIGIFKIVSESAVGA 689

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG  A  +L  ++E LK  +  LKV    ++ ++E + +  +       + K
Sbjct: 690 GLRRIEALTGLAAIKYLGEKEEILKEASDLLKVQDKEIISKIESLQQVLKTKDKEIEQLK 749

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           +++          S   +  +  +   + + DS+ LK++ D L+ K++   ++L   + E
Sbjct: 750 IKMASILADSLINSAISLDGIKVVVSKVEDYDSEALKALGDILKDKLKIAAVVLASSTPE 809

Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG- 891
            KA  + + T+D++    +   + +   K +  G GGGRP MAQ  G N +K D+A+   
Sbjct: 810 -KAIFVGMATKDVVQKGIDMGAIIKEVCK-VSEGNGGGRPDMAQGTGKNLSKVDEALNKA 867

Query: 892 ---VASFLK 897
              V   LK
Sbjct: 868 IDIVKEQLK 876


>gi|226311489|ref|YP_002771383.1| alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226094437|dbj|BAH42879.1| alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/916 (40%), Positives = 529/916 (57%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FF + GH + PS+ L+P +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTGNQIRQMFLDFFVEKGHRIEPSAPLVPIDDPSLLWINSGVATLKKYFDGRIIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVGRT RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K
Sbjct: 61  PRITNSQKSIRT----NDIENVGRTARHHTFFEMLGNFSIGEYFKEEAIEWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   L +T++ EDEEAF+LW K  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPELLSVTIHPEDEEAFELWNKKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAFGNDPSDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q   NN++ DL   LI+ + +++G+KY+      V  +VI DH R+  F I DG 
Sbjct: 234 MTSVIQGVDNNFETDLLFPLIEKTTEISGVKYKTSPEMDVALKVIADHARTVVFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYV+RR++RRA+   + LG  +P +  L   + T MG  YPE++Q +  IE+ 
Sbjct: 294 LPSNEGRGYVIRRLLRRAVRMGKKLGVEKPFLYSLTETVGTMMGEFYPEVVQKRAFIEKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L  ++  +       L+G   FK+YDT+G P+D+ +D    +
Sbjct: 354 IRAEEERFHETLNDGLAILSDMVKAAKDSGKTQLSGQDVFKMYDTYGFPVDLTEDFADEQ 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F++A+EEQR RARA    + S   +     L +    +QF+GY  L     
Sbjct: 414 GLT-VDRDGFDKAMEEQRERARAARQDVDSMQIQG--GPLSDLTVTSQFVGYTEL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               +  V+AI+   ++VEEA  GQ V+VV  QTPFYAE+GGQ+
Sbjct: 466 ------------------VATGKVEAIILDNQLVEEAEEGQTVQVVLSQTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  I D ++ ++TDVQK   G  VH  IVE G LR    +   ++ + R  ++ NH+
Sbjct: 508 NDEGFLISDIVKARVTDVQKGPMGQNVHSVIVEAGTLRKGDDVRAEVNREARLAITQNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS + P+ LRFD TH   IT  EL+ IE  VN+ +  NL 
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVAPERLRFDFTHISSITPEELERIEAIVNEKVWANLG 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V        +A A GA AL G KY D VRVV V     G +S  LCGG HV++T EI L 
Sbjct: 628 VEISNKPLAEAKAMGAMALFGEKYGDVVRVVKV-----GEYSLELCGGCHVNNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            +VSES I AG RRIEA+TG+ A   L  Q   LK +A  LK         RVE + ++ 
Sbjct: 683 KLVSESGIGAGTRRIEAVTGRGAYQFLNQQFTTLKEVAQALKAPVLAEAPARVEGLQQQL 742

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +++Q  +   + +L   + +       ++  +N ++  +S VD   L+ ++D L+ K+ S
Sbjct: 743 KEVQRENESLRAKLGNIEAASLTDKLQQVDGMNVLAARVSAVDMDNLRGMVDELKNKLGS 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +I+L  +  + K +++  VT+DL+D   +A  + +  A   GGGG GGRP MAQ+GG +
Sbjct: 803 AVIVLGAVDGD-KVNLVAGVTKDLMDQGIHAGKIIKEVATRCGGGG-GGRPDMAQAGGKD 860

Query: 882 GNKADQAIAGVASFLK 897
            +K  +A+  V  F+K
Sbjct: 861 PSKLQEALDAVVDFVK 876


>gi|299822850|ref|ZP_07054736.1| alanine--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816379|gb|EFI83617.1| alanine--tRNA ligase [Listeria grayi DSM 20601]
          Length = 876

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/913 (37%), Positives = 514/913 (56%), Gaps = 57/913 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   +   +R  FL+FF++ GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSQEVRQMFLDFFKEKGHTIEPSASLVPANDPTLLWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             ++  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRLSNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIVWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY ED+EA  +WK+  GL+   I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPEKLYVTVYPEDKEAKAIWKEKVGLADAHIVEI--EDNFWDIG-VGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDPDDPELYPGGENERYLEIWNLVFSQFNHNPDGSYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF   I+ +E++  ++Y       V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPTIKETEKLANVRYGNSSETDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+L+G  EP M  L+P + + M S YPE+ + +  I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKLIGINEPFMYRLVPVVGSIMKSYYPEVSKQESFIQKI 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +RSE+ERF +TL+ GL +L+ +L  +    +  ++G   FKLYDT+G P+++ ++     
Sbjct: 354 IRSEEERFHETLNEGLAILETILKEAKASGEATISGSAIFKLYDTYGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   +++QR RAR     + S   +     L      + FIGY+       
Sbjct: 414 GL-AVDHEGFEAEMKQQRERAREARADVKSMQVQGEL--LATLTEPSAFIGYENTESR-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +V+E  +G++ +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SQIVYLIQNDTLVDEVKAGEEAQVIFRETPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G          + DVQK      +H   VE G+L++   + L +D   R+    NH+
Sbjct: 508 ADHGTIQSTSGLAYVKDVQKAPNKQNLHRIFVEEGVLKSGEEVDLRVDTYKRKSTVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + P+ LRFD +H   I+ AEL  +E  VN+ I + +P
Sbjct: 568 ATHLLHRALKNVLGEHVNQAGSLVEPERLRFDFSHFSQISEAELAEMEAAVNEKIWEQIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M  ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VVIEEMPIDEAKALGAMALFGEKYGDIVRVVQV-----GRYSIELCGGVHVKNTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SES I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +V+++  E +
Sbjct: 683 KIISESGIGAGTRRIEAVTGEAAYRFVTEQETTLKETAAKLKTNSSEAPQKVDQLLAELK 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L   + +       ++  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENDSLLAKLANTESAAIFEQPEEVNGVPVIAKKVNAKDMNQLRQFVDNWKDKQLEG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +++L   S+E K +++  V+E    ++ A  L +  A  + GG GGG+P MAQ+GG N  
Sbjct: 803 VLVLA-TSEEGKVNLIAAVSEAYRSKYPAGKLIKEVAARV-GGNGGGKPDMAQAGGKNPE 860

Query: 884 KADQAIAGVASFL 896
              +A+A V  ++
Sbjct: 861 ALPEALAFVKEWI 873


>gi|237755762|ref|ZP_04584366.1| alanyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692072|gb|EEP61076.1| alanyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 876

 Score =  829 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/902 (40%), Positives = 535/902 (59%), Gaps = 41/902 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FL++F+  GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+  Y+  
Sbjct: 4   MTADEIRQSFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QK  R  GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   + 
Sbjct: 64  ASCQKVFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFAWEYLTEHLKIP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L ++V++ED+EAF++W K  GL   KI R+   DNFWSM +TGPCGP SEI++D+GE
Sbjct: 124 KEKLLVSVFEEDDEAFEIWNKHIGLDESKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGE 183

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G     +E+  RY+EIWNLVFMQ+ +  K     LP  SIDTGMGLER+A+VLQ   
Sbjct: 184 KF-GSPEFGAEDDFRYLEIWNLVFMQYNRDEKGVLHPLPNPSIDTGMGLERIASVLQGVD 242

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           +NYD DLFK +IQ +E+V+G +Y     + +  RVI DHLR+ +FLI+DG+LPANEGRGY
Sbjct: 243 SNYDTDLFKPIIQFAEEVSGKEYGKNEKDDIAMRVIADHLRAITFLISDGVLPANEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ Y + L   +P +   +  +  +M +AYPELIQ +  I+   +SE+E+F 
Sbjct: 303 VLRRIIRRALRYGKNLSIEKPFLYEGVDVVIEKMKTAYPELIQNRSFIKTITKSEEEKFI 362

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTL R + +L  ++          L G+ AFKLYDT+G P+D+M++IL   G    D+I 
Sbjct: 363 KTLKRSMDILYQMIEQARKENRRHLTGEEAFKLYDTYGFPIDLMEEILKDEGFT-FDLIE 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+  LEEQ+ RAR       S   + ++ +LK K    QF+GY+ L              
Sbjct: 422 FHNLLEEQKERARKSW-KSQSKEIKPVYLTLKNKLPENQFVGYETLTSE----------- 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S V AI++  ++V+ A  G+ VE+V D TPFY E GGQ+GD G   GD
Sbjct: 470 -----------NSKVLAIIKGDQLVDTAKEGEDVEIVLDITPFYPEKGGQVGDRGIIEGD 518

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D Q   +G+ VH   V  G ++    +   +D + R  +  +H+ATHLLH AL
Sbjct: 519 EFLFEVLDTQTPVDGLIVHKGKVLFGSVKEGAYVRAKVDKERRENIMRHHTATHLLHAAL 578

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS ++ + LRFD TH + +T  ELK++E+ VN  I +N  VV + M  E
Sbjct: 579 RNVLGDHVKQAGSLVSDEYLRFDFTHFESMTDEELKAVEELVNREIMKNEEVVCQEMQYE 638

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+ SGA A+   KY D VRV+S         S  LCGGTHV  TG+I    I+SES++ 
Sbjct: 639 EALKSGAMAIFEEKYADVVRVISAG------ISKELCGGTHVKRTGDIGYFKILSESAVS 692

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G RRIEA+ G +A    + +   +K L+  L   +  ++ RV ++  + ++ +      
Sbjct: 693 SGTRRIEAVAGIKAVEKGLQEHYIIKDLSRLLTAKEDQLLDRVLKLQNQIKEKEREIENL 752

Query: 778 KLQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           + +L +    E+L+  +          +  ++  EL+ + D L++K+   +I++     E
Sbjct: 753 RKKLALSNINENLNIIEKEGFKVAYVSVENLNPNELREIADHLRQKLGKSVILVASKDAE 812

Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K K + ++ V+++L + + A D+ +  A  +GG G GGRP  AQ G  + +K  Q     
Sbjct: 813 KQKVNFVVAVSKELSENYKAGDIVKKVASAVGGSG-GGRPDFAQGGINDTSKLSQLFEEF 871

Query: 893 AS 894
             
Sbjct: 872 KK 873


>gi|158521281|ref|YP_001529151.1| alanyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|205830076|sp|A8ZY67|SYA_DESOH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158510107|gb|ABW67074.1| alanyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 876

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/909 (41%), Positives = 532/909 (58%), Gaps = 46/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +  R TFL++F+  GH ++ SSSL+P  DPTL+F N+GMV FK +F G+EK  Y   
Sbjct: 1   MTGNEARKTFLDYFENQGHRVVRSSSLVPQADPTLLFVNAGMVQFKRVFMGEEKRDYTTA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAWDLL   + L 
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKERAIELAWDLLLNGYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L ++V+ ED+EAF +WK   GL+  +I R+   DNFWSM +TGPCGPCSEI+ D+GE
Sbjct: 121 EDKLSVSVFHEDDEAFSIWKDRIGLAESRIARLGEKDNFWSMGDTGPCGPCSEIYMDRGE 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++EIWN+VFMQ+ +Q   E   LP  SIDTGMGLER+  V+Q+
Sbjct: 181 KYGCGRPDCAPGCDCDRFMEIWNMVFMQYNRQASGELTPLPHPSIDTGMGLERICAVIQD 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGR 297
           +  NY+ DLF  +I+  E  +G  Y     ++   +VI DH R+++FLI DG+LP+NEG+
Sbjct: 241 RDTNYETDLFIPIIRGIEAASGKTYGQAPDMDVCMKVIADHSRAAAFLIGDGVLPSNEGK 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y R LG T P +      +   M   YPEL +    I   L +E+ R
Sbjct: 301 GYVLRRILRRAIRYGRQLGLTRPFLSRTAGTVFEVMAEPYPELKENASFITNVLENEEVR 360

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD GL LL   L  +    + ++ G V FKLYDT+G P+DI++D++  + + G+D+
Sbjct: 361 FSETLDNGLRLLSETLDGMAAKGESVIPGGVIFKLYDTYGFPVDIVRDVVREK-MIGLDM 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+ A+ EQ++++R+           + + +L  K   T F+GY  L            
Sbjct: 420 EGFDAAMAEQKAKSRSVVDFSKQP---EAYRNLSAKGMKTGFVGYAGL------------ 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V A+V  G  +E A +GQ++E+V D TPFY  +GGQ+GD G   
Sbjct: 465 -----------AAQATVLALVNGGSELETATAGQEIEIVTDTTPFYGASGGQMGDVGVIT 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG+ + +TD  K   G+ +H   V  G ++   ++ L +D   RR  + NH+ATHLLH 
Sbjct: 514 ADGLEITVTDTIKDPTGLVIHKGQVASGTVKKGQTISLAVDEDRRRATAANHTATHLLHA 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  I+G HV Q GS ++PD +RFD TH   +  A L  IE  VND I +N  V    M+
Sbjct: 574 ALGGIVGDHVKQAGSMVSPDRMRFDFTHFSMLDRATLDRIEVFVNDRIRENRAVTISEMS 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY D VRVV+V+       S  LCGGTH   TG+I L  I+SE+S
Sbjct: 634 MDQAMEQGATALFEEKYGDTVRVVAVDG-----VSKELCGGTHAQRTGDIGLFKILSEAS 688

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TG  A + +  Q   L   A  LK S   +  R++++  E R +    A
Sbjct: 689 VASGVRRIEAVTGAGAVAFVQEQMGILAEAAGMLKESPAALAARIQKLLAESRTMAKEIA 748

Query: 776 KRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             K  L    +          +  V  ++  ++  +   L+ + D L+ K+ SG+++L G
Sbjct: 749 GLKTSLATASMEGPKSDDAKTLNGVKVIARTVTADNPAALRDLADRLKDKLGSGVVVL-G 807

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + + KA +++ V+ DL  RF A D+ R +A V+GG G GGRP MAQ+GGP     + AI
Sbjct: 808 AAADGKAFLIVSVSRDLTGRFKAGDIVREAAAVVGGKG-GGRPDMAQAGGPQPEHLEAAI 866

Query: 890 AGVASFLKK 898
                 + K
Sbjct: 867 QKACDMIGK 875


>gi|304407565|ref|ZP_07389217.1| alanyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304343516|gb|EFM09358.1| alanyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 877

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/910 (39%), Positives = 518/910 (56%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L FF+  GH + PS+SL+P NDP+L++ N+GM P K  F G+  P    +
Sbjct: 1   MKASEIRSKWLAFFESKGHHIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVIPDNPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
           T  QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT      
Sbjct: 61  TNSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKQWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  RL +TVY ED EAF+ W K  GL  ++I ++   +NFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPSRLSVTVYPEDTEAFEFWNKKIGLPEERIYKLD--ENFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           G+              E ER++E+WNLVF QF          LP  +IDTG GLER A++
Sbjct: 174 GDKYGDLNDPECWPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 233

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ+  +N+D DLF+ +I  + ++  + Y  N  + +  +VI DH+R+ +F + DG+LP+N
Sbjct: 234 LQDVDSNFDTDLFRPMIDRTCEIANVSYHVNADHDLALKVIADHIRTVAFAVGDGVLPSN 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV+RR++RRA+ Y + LG   P +  L   +   MG  YPE+++ +  IE  +R+E
Sbjct: 294 EGRGYVIRRLLRRAVRYGKSLGIDRPFLFELTKVVGDVMGMYYPEVVEKREFIERVIRTE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  GL LL  ++S + +     ++G+ AF+LYDT+G P D+ +D     GL  
Sbjct: 354 EERFHETLSDGLTLLGALVSQVREAGKNEISGEDAFRLYDTYGFPFDLTEDYASENGLT- 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F+ A+E QR RARA     G    +     L E    ++F+GY  L         
Sbjct: 413 VDRAGFDSAMEAQRERARAARQETGGMNVQG--GPLSELTEKSEFVGYSEL--------- 461

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S + AIV +  +V+ A  G +V V+ D+TPFYAE+GGQ+GD G
Sbjct: 462 --------------TTNSKITAIVHEDSLVDIAGEGSRVLVLLDRTPFYAESGGQIGDRG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              GDG  L + DV K  +G  VHHAIV  G +R   S   ++    R  +  NH+ATHL
Sbjct: 508 VIQGDGFVLNVEDVTKAPQGQPVHHAIVASGTVRVGESAQASVARDLREDIVKNHTATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H   IT  EL  IE  VN+ I    PVV  
Sbjct: 568 LHKALKEVLGEHVNQAGSLVKSDSLRFDFSHFGAITEEELADIERRVNEQIWIGTPVVIE 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                +A A GA AL G KY D VRVV V       +S  LCGG HV++T +I    ++ 
Sbjct: 628 SKAIAEAKAMGAMALFGEKYGDVVRVVQVGG-----YSIELCGGCHVANTSQIGTFKLIG 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I +G+RRIEA+TG+ A +++  Q + LK  A  LK +  +V  R+E ++ + ++L  
Sbjct: 683 ESGIGSGVRRIEAVTGRHAYAYMEAQFDLLKQAAGLLKSNTADVPKRIEALFGQVKELGR 742

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   + +L+  +          + DV  ++  +S      L+ ++D L+ K+ S II+L
Sbjct: 743 DNESLQAKLSRIEAGSLTDQAKTVGDVTILTAAVSAPSMDALRGIVDELKAKLPSAIIVL 802

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G +++ K +++  V+ D + + FNA  L + +A V GGGG GGRP MAQ+GG + +K  
Sbjct: 803 -GAAQDDKVNLVASVSPDFVKKGFNAGKLVKEAAAVCGGGG-GGRPDMAQAGGKDASKLA 860

Query: 887 QAIAGVASFL 896
            A+      +
Sbjct: 861 DALKLAEELV 870


>gi|67459745|ref|YP_247369.1| alanyl-tRNA synthetase [Rickettsia felis URRWXCal2]
 gi|75535865|sp|Q4UJT5|SYA_RICFE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|67005278|gb|AAY62204.1| Alanyl-tRNA synthetase [Rickettsia felis URRWXCal2]
          Length = 878

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/901 (46%), Positives = 565/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY  DEEA   WKKI+G   D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYVTVYHTDEEAASYWKKIAGFRDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K  R  LP+ SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKIEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRAM +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRAMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G++AFKLYDT+G PLD+ +DIL  R    +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNELSGEIAFKLYDTYGFPLDLTEDILKNRD-ISVDHKRFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLAQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAECKIIALIKDNNLVNDIKEIDTQFLLISNQTPFYGESGGQMGDIGMIFSKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G ++   +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 IEVIDTLKYLGSIIVHKCILKKGQIKIGENANFSIDIKYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDA+
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVDTTLMTTEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  +D  LKS+ S LK ++  ++ +V  I E  ++L+    K    
Sbjct: 696 RRIEAVCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKELEKELEKVHLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +     I  V  +   I  +D+K L+   + L KK++  I++ +  + + K
Sbjct: 756 RLDLSIEQIEKQAEDIKGVKLIYRYIENLDNKVLRQAAENLTKKVEDLIVVYITGNND-K 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++ A  +A+  +  LGG GGGG+  +AQ+GG +  K       +   
Sbjct: 815 LSITVAVSKAITDKYKAGIIAKELSLFLGGSGGGGQASLAQAGGNDIGKLTNIQEKLHGL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|157804247|ref|YP_001492796.1| alanyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
 gi|205830191|sp|A8F078|SYA_RICCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157785510|gb|ABV74011.1| alanyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
          Length = 878

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/901 (45%), Positives = 566/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKTNNHTHVPASSLIPQNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTK+F+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKKFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T+Y  D+EA   WKKI+G   D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 NKLYVTIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEN 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEI N+VFMQ+EQ +K  R  LP+ SIDTGMGLERM  +LQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEILNMVFMQYEQVDKDTRIELPQKSIDTGMGLERMTAILQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K +G    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQKIIDYTENIVKVKVKGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +++  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNIYPELKRSESFISNILEQEEIRFKTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K + L+G++AFKLYDT+G PLD+ +DIL       +D   F + 
Sbjct: 365 LERGLKLLSEETETLTKGDKLSGEIAFKLYDTYGFPLDLTKDILK-NYDISVDHQGFKEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T ++WF +KE+YG+T+F+GY L                   
Sbjct: 424 MLAQKERARKSWLGSGEYKTNQLWFDIKEQYGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     +  +++   +V        +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAECKIIVLIKDNNLVNNIQETDTQFLLISNQTPFYGESGGQMGDNGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGKIHVGENANFSIDVKYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD+++SK +T+ E+  IED VN+II  N  V T +M  EDA+
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISYSKAVTNEEITLIEDKVNEIIRANHEVNTTLMATEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G +S  LCGGTHV   G+I    I +ES+I AGI
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GNNSLELCGGTHVRRLGDIGCFKITNESAIAAGI 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  ++  LKS+ S LK ++  ++ +V  I E  + L+    K    
Sbjct: 696 RRIEAVCGEFVIKLMREKENLLKSVESSLKTNKNELITKVNNILERNKGLEKELEKVHLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L ++  +    +I  V  +   I  +++K L+   + L KK++  I++ + +    K
Sbjct: 756 HLDLSIDQINKEAEEIKGVKLIYQYIENLNNKVLRQAAENLTKKVEDLIVVYI-VGNSDK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D+FNAV++A+  +  LGG GGGG+  +AQ+GG +  K ++    + S 
Sbjct: 815 LSITVAVSKAITDKFNAVNIAKELSLFLGGTGGGGQASLAQAGGHDIGKLNKIHEKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|331091263|ref|ZP_08340104.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330404710|gb|EGG84249.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 879

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/906 (38%), Positives = 513/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+FF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P    VTT
Sbjct: 6   VNELRKMFLDFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRTRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIKWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY+EDEEA+++W K  G++ ++I +    DNFW    +GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYEEDEEAYEIWNKEMGIAPERIFKFGKADNFWEHG-SGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+EIWN VF QF+   K     L + +IDTGMGLER+A+++Q+  
Sbjct: 181 GCGRPDCTVGCECDRYMEIWNNVFTQFDNDGKGHYEELEQKNIDTGMGLERLASIVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L +    + G +Y  E +  V+ RVI DH+RS +F+I+DGI+P+N GRGY
Sbjct: 241 SIFDVDTLKALREHICTLAGTEYGKEYSKDVSIRVITDHIRSVTFMISDGIMPSNNGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R+LG     +  L   +       YPEL + K  I   +R E+E+F 
Sbjct: 301 VLRRLLRRACRHGRILGIEGQFLTKLCETVINGSKDGYPELEEKKDAIFNVIRQEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  ++  +   K+  L+G+ AFKLYDT+G PLD+ ++IL  +G   ID   
Sbjct: 361 KTIDQGLGILSEMIQEMTEKKETTLSGENAFKLYDTYGFPLDLTKEILEEKGF-DIDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  ++EEQR +AR           +   +   +    T+F+GYD L              
Sbjct: 420 FKTSMEEQRVKARKARGVSNYMGADATVYDEIDPSVTTEFVGYDHLTYD----------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + EIV     G+K  +  ++TPFYA  GGQ GD G    +
Sbjct: 469 ------------SDITVLTTENEIVNTLSEGEKGTIFVNRTPFYATMGGQEGDKGLITTE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + +  K   G   H   V +G      ++ L+++   R     NHSATHLL  AL
Sbjct: 517 HAEFAVEETVKLLGGKVGHVGKVTKGSFTVGDAVNLSVEENGRANTCKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TPD LRFD  H   +T  E+   E+ VN  IA+N  V+T +MN E
Sbjct: 577 KTVLGSHVEQKGSLVTPDRLRFDFVHFSAMTPEEIAKTEELVNAEIAKNNAVITEVMNIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A+GA AL G KY + VRVVS+     G  S  LCGGTHV++TG I    I+SE+ + 
Sbjct: 637 QAKATGAMALFGEKYEEDVRVVSM-----GDFSKELCGGTHVANTGMITTFKILSEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG    ++    +++L   A   K +   +  +VE +  E + LQ      
Sbjct: 692 SGVRRIEALTGDGVFAYYREMEKELNEAAKVAKATPAQLKDKVEHMLSEIKSLQSEVEAL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + L        ++  +  ++  + +VD   L+ + D L++K+  G++++   S 
Sbjct: 752 KSKLAKDALGDVMNQITEVKGIKLLATAVEDVDMNGLRDLGDQLKEKLGEGVVVIAS-SA 810

Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K +++ +VT+  +    +A +L +  A ++GGGG GGRP+MAQ+GG N      AIA 
Sbjct: 811 NGKVNLIAMVTDGAMEKGAHAGNLIKGIAALVGGGG-GGRPNMAQAGGKNPAGIPDAIAK 869

Query: 892 VASFLK 897
           V   L+
Sbjct: 870 VQEVLE 875


>gi|289549314|ref|YP_003474302.1| alanyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182931|gb|ADC90175.1| alanyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 864

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/901 (39%), Positives = 516/901 (57%), Gaps = 49/901 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + S+ LIP  DPTL+F N+GMVPFKN+F G EK  Y   
Sbjct: 1   MTGNEIRERFLSFFERKGHTRVRSAPLIPEGDPTLLFVNAGMVPFKNVFLGLEKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  L 
Sbjct: 61  VSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKREAILYAWEFLTQELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+++VY +DEEA ++W +  GL  +++ R+   DNFW M E GPCGP SEI+ ++  
Sbjct: 121 ENRLWVSVYKDDEEALRIWTEEVGLPEERVWRMGEEDNFWQMGEVGPCGPSSEIYVER-- 178

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                        ER++EIWNLVFMQ+ +        LP  SIDTGMGLER+A+VLQ   
Sbjct: 179 ---------DSSEERFLEIWNLVFMQYNRDPSGHLHPLPHPSIDTGMGLERIASVLQNTP 229

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            N++ DL + ++   E++TG  Y  +    V  RVI DHLR+ +F +ADG++ +N GRGY
Sbjct: 230 TNFETDLLRPILAFGEEITGKAYGQDYLTDVALRVIADHLRALTFAVADGVIFSNTGRGY 289

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  EP +   +  +   M  AYPELIQAK  ++  ++ E+ERF 
Sbjct: 290 VLRRILRRALRFGYKLGVYEPFLYKGVDTVVRVMKDAYPELIQAKEYVKGLIKVEEERFL 349

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RG+  ++ +L    K  +L+G   F +YDT+G PLD+++++   +GL  ID+  F 
Sbjct: 350 QTLRRGMPAVEELLQKGEKTGVLDGKDVFTIYDTYGFPLDLLEEMAREKGLT-IDMEGFE 408

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +  QR RAR     + +   + ++  LKE    ++F+GY                   
Sbjct: 409 REMNLQRERARK-HFKIEAKQIKPVYSHLKELGKTSRFVGYQQYSS-------------- 453

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V AIV+ G++V E   G+K E+V ++TPFYAE GGQ+GDTG   G   
Sbjct: 454 ---------FTKVLAIVKDGQLVSELREGEKGEIVIEETPFYAEGGGQVGDTGIIEGMEG 504

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + D Q   EG+ +H  +V +G ++    ++  ID + R  +  NH+ATHLLH AL  
Sbjct: 505 VFHVEDTQSPTEGVILHIGVVTKGRIKVGDEVLAQIDAERREDIRRNHTATHLLHAALRY 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS ++   LRFD THS P+   E+K IE+ VN  I +N PV+   M+   A
Sbjct: 565 VLGDHVRQAGSLVSDKYLRFDFTHSSPLKEEEIKKIEELVNQQIMKNEPVIVEEMDYRTA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I+SGA A+   KY +RVRV+S      G  S  LCGGTHV  TG+I    I+S+ S+ AG
Sbjct: 625 ISSGAIAIFEEKYGERVRVIS-----AGSFSKELCGGTHVDRTGDIGYFKIISQESVGAG 679

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---- 775
           +RRI A TG+ A      +   LK LA  L    GN++  VE++ E  + L+   +    
Sbjct: 680 VRRIVAKTGRWAVEEAYREHILLKELAEHLGTDPGNLLSVVEKLEERVKLLEREKSELEL 739

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           K   +   E L    I  VN    ++   D   L+ + D ++ K  S +I L  +  E K
Sbjct: 740 KLLQEKLKEALKKESINGVNLYWGMVENTDQSALRQMADQIRSKDSSAVIFLASVKGE-K 798

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S L+ V+++L  + +AVD+ +    +LGGGG GGR  +AQ GG   +    A+  + + 
Sbjct: 799 LSTLVAVSKNLTHKLSAVDIVKQIGPILGGGG-GGREDLAQGGGTKPDAFPTAVEKLRAI 857

Query: 896 L 896
           L
Sbjct: 858 L 858


>gi|91762223|ref|ZP_01264188.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718025|gb|EAS84675.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 889

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/913 (43%), Positives = 583/913 (63%), Gaps = 44/913 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IRTTFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKN+FTG EK  Y   
Sbjct: 4   KTLNQIRTTFLDYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +D
Sbjct: 64  TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEEAISYAWNLITKEFGID 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +DEEAF  WKKI+G S D+II+I T+DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 124 KNRLYVTVYHDDEEAFNFWKKIAGFSDDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHGD 183

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GGLPG+ +E+G R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLER+A +LQ  
Sbjct: 184 HLEGGLPGTKNEDGNRFIEIWNLVFMQYEQISKDKRINLPKPSVDTGMGLERIAALLQGT 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ D FK LI ++     +K   +N  + RVI DHLR+SSFL+A+G+LP+NEGRGYV
Sbjct: 244 HDNYETDHFKKLILSASDTLNVKVTDDNQSSFRVIADHLRASSFLLAEGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRR M ++ LLG  +P+  ++   L  EM + YPEL +A+ LI+ETL++E+E+F  
Sbjct: 304 LRRIMRRGMRHSHLLGSKKPVFYNIFKTLLEEMSNNYPELERAQSLIKETLKTEEEKFLV 363

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            LDRG+ +L+  L  +   +IL G+VAFKLYDT G PLD+ +DIL  + +  +D   F+ 
Sbjct: 364 LLDRGIKILNEELEKVE--KILPGEVAFKLYDTFGFPLDLTEDILKNKSMT-VDGEKFDL 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++E +  A+ +  G G  + ++IWF +K++ GAT F+GY                    
Sbjct: 421 LMKESKKLAKKNWKGSGDSSVDQIWFDIKDRLGATDFLGY-------------------- 460

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               T+    +V  I++  + V++     +  ++ +QTPFY E+GGQ+ DTG    +   
Sbjct: 461 ---STDKAEGVVTLILKNNKEVQDLQENDEGIIITNQTPFYGESGGQVADTGIISKEIFE 517

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            +++DVQKK   +F H+  V++G ++ + S+ L ID Q R  +   HSATHLLH AL  +
Sbjct: 518 FEVSDVQKKLGDLFAHYGKVKKGSVKLKDSVELKIDTQRRNNIRAYHSATHLLHEALRRV 577

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  D LRFD +H KPI+  E+K IE  VN II +   V TRIM  ++A+
Sbjct: 578 LGEHVTQKGSLVQSDRLRFDFSHMKPISDEEMKKIEHYVNSIIEKKSEVKTRIMTPKEAV 637

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY D VRV+S+  E+G   S+ LCGGTHV +T +I    I+S+SSI AG+
Sbjct: 638 ENGALALFGEKYGDEVRVLSMGDEEGKFFSTELCGGTHVVNTADIGKFKIISQSSIAAGV 697

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--------WEE---YRK 769
           RR+EA+   +    L  ++ +        +     +  ++ ++         ++    + 
Sbjct: 698 RRVEALRDVQLTDFLKEKENQSNLSDQKNEAVIKELETKIIKLGGKPNLQNKDQVTLIKD 757

Query: 770 LQLIHAKRKLQLNVEDLSCHKIAD-----VNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L     +  +   ++D   +KI D            I ++  K+L+ ++D  +K+I  G+
Sbjct: 758 LNRQFDQLSVISILKDKDKNKINDQTINGFKVRFQNIMDLPFKDLRKLIDEGKKEIGEGL 817

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +++  I  + K  + + VT+ L ++F+AV + R  ++V+GG GGGGR   AQ+GG   +K
Sbjct: 818 VIIYAI-NDNKVGLAVGVTKTLEEKFDAVKIVRAGSEVIGGKGGGGRADFAQAGGTLPDK 876

Query: 885 ADQAIAGVASFLK 897
            +++   +   + 
Sbjct: 877 IEESFENIKKLIN 889


>gi|258511993|ref|YP_003185427.1| alanyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478719|gb|ACV59038.1| alanyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 879

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/912 (38%), Positives = 520/912 (57%), Gaps = 54/912 (5%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M ++    IR  F +FF + GH +LPS  L+P +DPTL++ N+GM P K  F G+E P  
Sbjct: 1   MKSLTGQEIRRAFKQFFAERGHMVLPSFPLVPKDDPTLLWINAGMAPLKPYFDGREIPEV 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +   QKC+R     ND++ VG T RH TFFEMLGNFSFG YFK  AI  AW+ LT+  
Sbjct: 61  PRIVDAQKCIRT----NDIEEVGHTARHQTFFEMLGNFSFGDYFKLEAITWAWEFLTQVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +LD  R+ +T++++D+EAF++W    GL A +I R    DNFW + E GPCGPCSEIF+D
Sbjct: 117 ELDPERISVTIHEDDDEAFEVWHHRVGLPASRIYR-GKEDNFWEIGE-GPCGPCSEIFYD 174

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      + +R++EIWNLVF QF +        LPK +IDTG GLER+A++
Sbjct: 175 RGEAYGCGSPDCKPGCDCDRFLEIWNLVFTQFNKNADGSYSPLPKKNIDTGSGLERLASI 234

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ+  NN++ DLF+ +I  + +++G  Y     + V+ ++I DH+R+ +F I DG+LP+N
Sbjct: 235 LQDVPNNFETDLFRPIINRAAELSGRPYGRSAEDDVHLKIIADHVRTVTFAIGDGVLPSN 294

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV+RR++RRA+   R LG   P +  L+  +   MG  YPE+ + + LIE  +R+E
Sbjct: 295 EGRGYVIRRLLRRAVRSGRKLGVERPFLYELVAVVDRIMGDDYPEVREKRSLIERVVRTE 354

Query: 355 DERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  G  LL+  +       + +L+G+ AF+LYDT+G P+D+  +I   +G   
Sbjct: 355 EERFLQTLAAGEELLNRTIEEVKARGETVLSGEAAFRLYDTYGFPIDLTVEIAREKG-IA 413

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + LEEQR+RAR          +++   +L+     ++F+GYD L         
Sbjct: 414 VDREGFERELEEQRARAREARQVAEGMQSQR--GALETFTEPSRFVGYDEL--------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          V + +  + Q G+ V+    G++ +V+ D TPFYAE+GGQ+GD G
Sbjct: 463 --------------TVDATIIGLFQDGDRVDGLAIGEEGQVILDVTPFYAESGGQVGDRG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G   + ++ DVQK   G  V    V  G L    S+   +D   RR +  NH+ATHL
Sbjct: 509 EIVGANGKAEVLDVQKAPHGQHVMRVRVVDGSLLQGDSVRAHVDEDFRRDIVKNHTATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS + P+ LRFD +H  P+T  EL  +E  VND I ++  V  R
Sbjct: 569 LHKALRDVLGTHVAQAGSLVEPERLRFDFSHFGPLTDEELAEVERRVNDEIWRDHAVHIR 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ ++A A GA AL G KY  RVRVV          S  LCGG HV  T  I    I S
Sbjct: 629 EMDLDEAKAMGAMALFGEKYGQRVRVVQAGE------SIELCGGCHVPRTSVIGQFLITS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I +G RRIEA+TG+ A      ++E+L+ +A  LK +   VV R + + +E R+L+ 
Sbjct: 683 ETGIASGTRRIEAVTGRYAYRVAREREERLRQVADALKTNVSTVVERAQRVVQEMRELER 742

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L          +   +A V  +   +S++D   L+ ++D ++ ++ S +++L
Sbjct: 743 ELESAKARLAHARVDELVANVETVAGVPVIRAALSDLDMDGLRQLVDEIKARVDSVVVVL 802

Query: 828 VGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
               +  K   +  V++D      +A ++ +  A V GGGG GGRP +AQ+GG +  K  
Sbjct: 803 GSAHR-GKVQFVAYVSKDWQSRGLHAGEIVKQVAAVTGGGG-GGRPDLAQAGGRDAAKLA 860

Query: 887 QAIAGVASFLKK 898
           +AI  V   L++
Sbjct: 861 EAIQKVGEILEQ 872


>gi|156743640|ref|YP_001433769.1| alanyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|205830195|sp|A7NQA5|SYA_ROSCS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|156234968|gb|ABU59751.1| alanyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 905

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/928 (39%), Positives = 522/928 (56%), Gaps = 69/928 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + ++IR  FL FF++ GH  +PSSSLIP NDPTL+FTNSGMV FK+ F G E+  Y
Sbjct: 1   MKRLSSAAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              TT QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI +AW+LLTK F
Sbjct: 61  TRATTAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIPMAWELLTKVF 120

Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           DL   RL+ TV++       D+EA +LW   +G   ++++R    DNFW MA+ GPCGPC
Sbjct: 121 DLPVERLWFTVFEGDDEVPPDDEAAQLWVA-AGADPERVLRFGRKDNFWVMADAGPCGPC 179

Query: 173 SEIFFDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEI    G+ +      G + +   Y+EIWN VFMQFE+        L + S+DTGMGLE
Sbjct: 180 SEITIFIGDDLKEMSAKGVNSDDPNYVEIWNNVFMQFERS---TMQPLHRPSVDTGMGLE 236

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           RMA V+Q   + YD DLF  LI+    + G        ++   R + DH R+ +FLIADG
Sbjct: 237 RMAMVMQGVHSTYDTDLFIPLIERQLALLGADEPTYRAHVAPFRAVADHSRAVAFLIADG 296

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LP N GR YVLRRI+RRA+   R +G+ +P +  +   +  +MG+ YPEL +    I E
Sbjct: 297 VLPGNTGRSYVLRRILRRAVYQGRTVGFEKPFLADVAAVVIEQMGAVYPELRERADFILE 356

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           T+  E+ +F +TL  G+ +L  V+  +      ++ GD AF L DT+G PLD+ Q I   
Sbjct: 357 TVDLEERQFLRTLSGGVSILKSVIERVRAVGGTVIPGDDAFTLKDTYGFPLDLTQKIAAE 416

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D   + + +EEQR+R R  +    +   E  W  +      T+F GY       
Sbjct: 417 HGLT-VDEAGYERRMEEQRARGRRAAQFKRAADAEA-WADI--DLPPTRFTGY------- 465

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                           L    S  V+A++  G+ V EAV+GQ+V++  D TPFYAE+GGQ
Sbjct: 466 ----------------LGVSGSGTVQALIVAGDQVAEAVAGQQVQIALDSTPFYAESGGQ 509

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG  IG   R +I DVQ+   G+ VH+ +VE G +    ++   +D   R  +  +H
Sbjct: 510 IGDTGVLIGPRGRARIDDVQRPVPGVIVHYGVVEEGAIAVYETVEAQVDSVRRAAIMRSH 569

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + PD LRFD TH++P+T  +L+ IE  VN  I  + 
Sbjct: 570 TATHLLHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPVTPEQLREIERRVNAWIRADT 629

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----------------HS 690
           PV  + +  + A+ +GA AL G KY D VR+V++   +G                    S
Sbjct: 630 PVAWQELPYQAALEAGAIALFGEKYGDVVRMVTIGCVNGNDALSPAAIAERQRAGFRMCS 689

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTHV  +GEI L  IVSESS+ AG+RRIEA+TG  A   +  Q   L ++A+ + 
Sbjct: 690 RELCGGTHVGRSGEIGLFRIVSESSVAAGVRRIEALTGAEAEQWVDAQIATLHNIAARVG 749

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD 805
                +  R+E +  E ++ Q    +   +    +L         + D+ F++  +   D
Sbjct: 750 APPSQLGERIEALLAELKQRQRALDELHARQARSNLEGLLANVQAVGDIRFLAAQVEAPD 809

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864
           +  L+ + D L+ K+ SG+++L  +  + KA +L + T DL   R +A +L +  A ++ 
Sbjct: 810 TARLREMGDWLRDKLGSGVVVLAAV-IDGKAQILAMATPDLAGRRIHAGNLVKALAPIV- 867

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GG GGGRP MAQ+GG        A+  V
Sbjct: 868 GGSGGGRPDMAQAGGREVAHIPDALEHV 895


>gi|229828473|ref|ZP_04454542.1| hypothetical protein GCWU000342_00535 [Shuttleworthia satelles DSM
           14600]
 gi|229793067|gb|EEP29181.1| hypothetical protein GCWU000342_00535 [Shuttleworthia satelles DSM
           14600]
          Length = 921

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/912 (36%), Positives = 505/912 (55%), Gaps = 45/912 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +L+FF+  GH ++ S SL+P ND +L+  N+GM P K  FTGQE P  + VTT
Sbjct: 35  VNQLRRMYLDFFESKGHLVMKSFSLVPHNDDSLLLINAGMAPLKPYFTGQEIPPRRRVTT 94

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L+  
Sbjct: 95  CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKREAIHWSWEFLTRVLKLEPD 150

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFF 177
           RLY T++ +D+EA+++W +  G++ D + R   +      DNFW    +GPCGPCSEI++
Sbjct: 151 RLYPTIFIDDDEAYEIWTREVGVAPDHVYRFGKDPETGASDNFWEHG-SGPCGPCSEIYY 209

Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D+GE    G       EG+R++EIWN VF QF          L + +IDTGMGLER+A V
Sbjct: 210 DRGEKYGNGPDDVMGGEGDRFMEIWNNVFTQFNNDGHGNYTELAQKNIDTGMGLERLAVV 269

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+    ++ID  K +      ++G  Y    ++ ++ R+I DH+RS++F+I+DGI+P+N
Sbjct: 270 MQDVETVFEIDTMKAIRDEVCALSGKTYEANASDDISIRLITDHIRSTTFMISDGIMPSN 329

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + R+LG +   M  L   +  E    YPEL + +  I   L  E
Sbjct: 330 EGRGYVLRRLIRRASRHGRMLGISGEFMARLADVVIRESRDGYPELAEKQEFIRRVLTEE 389

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           + +F  T+D+GL +L  +   L    + +L+G  AF+LYDT+G P+D+  +IL  +G+  
Sbjct: 390 ERKFNATIDQGLAMLAQLEDQLSARGERVLSGADAFRLYDTYGFPVDLTAEILEEKGMT- 448

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
            D   F  A+EEQR++AR           E   +   +   ++ F+GYD L  S  +   
Sbjct: 449 YDREGFAAAMEEQRAKARGARKASNYMGKEATVYDDIDNSISSSFVGYDKLEASSKISVL 508

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +                      GE+V+    G +  V+ D+TPFY   GGQLGD+G
Sbjct: 509 TTEVNPAEDKY---------------GELVDALTDGSRGTVIVDETPFYGTMGGQLGDSG 553

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ +      G   H   +  G+L+    + L +D   R  ++ NHSATHL
Sbjct: 554 LIETAEGTFRVDETIHLLGGRIGHVGQMISGMLKVGDRVTLQVDADRRANIARNHSATHL 613

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +    LRFD  H   +++ E++ +ED VN+ IA ++PVVT 
Sbjct: 614 LHRALREVLGDHVQQKGSYVDDKKLRFDFVHFSAMSTEEIRKVEDLVNERIAADIPVVTE 673

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM++EDA  +GA AL G KY D VRVV +     G +S+ LCGGTHV  TG+I    ++S
Sbjct: 674 IMSQEDAKKTGAMALFGEKYGDEVRVVEM-----GDYSTELCGGTHVGRTGKIQAFKVIS 728

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E    AG+RRIEA+TG    ++    + +L   A+  K    ++V ++  + EE + L+ 
Sbjct: 729 EVGSSAGVRRIEALTGPAVFAYYEDIERELNEAATAAKTKPSDLVEKIGHMQEEIKGLEA 788

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K     E L     +  +I  V F++  +  VD   L+ + D L+ K+  GI++L
Sbjct: 789 ELESMKAAAAKEALGNVEDAVKEIKGVKFLAKALEGVDMNGLRDLGDQLKAKLGEGIVLL 848

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                + K  ++   TE       +A +L +  A ++GGGG GGRP+MAQ+GG N     
Sbjct: 849 ASA-NDGKVVLMATATEGAQKAGAHAGNLIKGIAGLVGGGG-GGRPNMAQAGGKNPAGIP 906

Query: 887 QAIAGVASFLKK 898
            A+A     L++
Sbjct: 907 AALAEAERVLEE 918


>gi|34222740|sp|Q8DH56|SYA_THEEB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 882

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/912 (38%), Positives = 509/912 (55%), Gaps = 54/912 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+   GH +LPS+SLIP +DPT++ T +GM+PFK IF GQE P     T
Sbjct: 5   TGDQIRQKFLDFYAAKGHTILPSASLIP-DDPTVLLTIAGMLPFKPIFLGQEAPKVPRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+L+T  + L  
Sbjct: 64  TAQKCLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKGEAIAWAWELMTTVYGLPP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ D+EA+ +W +  GL  ++I R+    NFW+   TGPCGPCSEI++D    
Sbjct: 120 ERLLVSVFENDDEAYDIWHRQVGLPKERIQRMGEESNFWTAGPTGPCGPCSEIYYDFYPE 179

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      ++  R+IE++NLVFM+  Q ++  R  L   +IDTGMGLERMA VLQ   N
Sbjct: 180 -KGLANVDLDDDGRFIELYNLVFMELNQDDQGHRTPLKAKNIDTGMGLERMAQVLQGVPN 238

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+A+ Q  G++Y+  N     + +VI DH R+   LIADG+  +N GRGY
Sbjct: 239 NYETDLIFPIIEAAAQRAGIQYQKANASTQTSLKVIGDHTRAVVHLIADGVTASNVGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + ++RLLG    +   L         + YP + + + +I   L+ E+E+F 
Sbjct: 299 VLRRLIRRIVRHSRLLGINGLVTPDLAQVAIDLAANVYPNVRERQAVILSELQREEEQFL 358

Query: 360 KTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           KTLDRG  LL  +LS              L G  AF L+DT+G PL++ Q+I   +G  G
Sbjct: 359 KTLDRGEKLLAEMLSPLKKAKGKKRSQPQLAGRDAFVLFDTYGFPLELTQEIAAEQG-IG 417

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F   + EQR R++A    +     E I  SL ++   TQF GY+ L         
Sbjct: 418 VDVAEFEACMAEQRQRSQAAHETIDVTVQEGID-SLGDQLHPTQFRGYEEL--------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +++ V AI+  G     A +G +V+V+ + TPFYAE+GGQ+GD G
Sbjct: 468 --------------SLTTTVTAILVAGHPATTATAGTEVQVILEATPFYAESGGQIGDRG 513

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                   + I DV +K + +FVH+  VERG L+    +   ID   RR++  +H+ATHL
Sbjct: 514 YLASSDALVHIHDV-QKQKELFVHYGKVERGSLKVGDRVSAQIDLSCRRRVQAHHTATHL 572

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++  ++SQ GS +  D LRFD    +P+T  EL+ IED +N  I+++    T 
Sbjct: 573 LQAALKKLIDENISQAGSLVAFDRLRFDFNCPRPLTREELQQIEDQINAWISESHTTHTY 632

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM   +A A GA A+ G KY ++VRV+ +        S  LCGGTHV +T EI L  I+S
Sbjct: 633 IMALSEAKAKGAIAMFGEKYGEQVRVLDIPG-----VSMELCGGTHVHNTAEIGLFKIIS 687

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AGIRRIEAI G   R +L  +D  ++ L    K     ++ R+ ++  + +  Q 
Sbjct: 688 ESGVAAGIRRIEAIAGAAVRDYLQQRDSIVRELCDRFKAKPEEILDRISQLQADLKAQQK 747

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L +            + + + +   ++ VD + LK+  + L  K+ SG ++L
Sbjct: 748 ALEHLKAELALAKTQALLEQAKPVGNSHVLIASLAGVDPQGLKTAAEWLLNKLGSGAVVL 807

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                  K ++L+  ++D++ R  +A  L    A+V  GG GGGRP+ AQ+GG    K  
Sbjct: 808 ATQPAADKVNLLVAASQDVVQRGVHAGQLVAALAQVC-GGRGGGRPNFAQAGGSQPAKLA 866

Query: 887 QAIAGVASFLKK 898
           +A+    S LK+
Sbjct: 867 EALELAHSRLKE 878


>gi|22299646|ref|NP_682893.1| alanyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|22295830|dbj|BAC09655.1| alanyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 891

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/912 (38%), Positives = 509/912 (55%), Gaps = 54/912 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+   GH +LPS+SLIP +DPT++ T +GM+PFK IF GQE P     T
Sbjct: 14  TGDQIRQKFLDFYAAKGHTILPSASLIP-DDPTVLLTIAGMLPFKPIFLGQEAPKVPRAT 72

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+L+T  + L  
Sbjct: 73  TAQKCLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKGEAIAWAWELMTTVYGLPP 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ D+EA+ +W +  GL  ++I R+    NFW+   TGPCGPCSEI++D    
Sbjct: 129 ERLLVSVFENDDEAYDIWHRQVGLPKERIQRMGEESNFWTAGPTGPCGPCSEIYYDFYPE 188

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      ++  R+IE++NLVFM+  Q ++  R  L   +IDTGMGLERMA VLQ   N
Sbjct: 189 -KGLANVDLDDDGRFIELYNLVFMELNQDDQGHRTPLKAKNIDTGMGLERMAQVLQGVPN 247

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+A+ Q  G++Y+  N     + +VI DH R+   LIADG+  +N GRGY
Sbjct: 248 NYETDLIFPIIEAAAQRAGIQYQKANASTQTSLKVIGDHTRAVVHLIADGVTASNVGRGY 307

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + ++RLLG    +   L         + YP + + + +I   L+ E+E+F 
Sbjct: 308 VLRRLIRRIVRHSRLLGINGLVTPDLAQVAIDLAANVYPNVRERQAVILSELQREEEQFL 367

Query: 360 KTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           KTLDRG  LL  +LS              L G  AF L+DT+G PL++ Q+I   +G  G
Sbjct: 368 KTLDRGEKLLAEMLSPLKKAKGKKRSQPQLAGRDAFVLFDTYGFPLELTQEIAAEQG-IG 426

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F   + EQR R++A    +     E I  SL ++   TQF GY+ L         
Sbjct: 427 VDVAEFEACMAEQRQRSQAAHETIDVTVQEGID-SLGDQLHPTQFRGYEEL--------- 476

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +++ V AI+  G     A +G +V+V+ + TPFYAE+GGQ+GD G
Sbjct: 477 --------------SLTTTVTAILVAGHPATTATAGTEVQVILEATPFYAESGGQIGDRG 522

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                   + I DV +K + +FVH+  VERG L+    +   ID   RR++  +H+ATHL
Sbjct: 523 YLASSDALVHIHDV-QKQKELFVHYGKVERGSLKVGDRVSAQIDLSCRRRVQAHHTATHL 581

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++  ++SQ GS +  D LRFD    +P+T  EL+ IED +N  I+++    T 
Sbjct: 582 LQAALKKLIDENISQAGSLVAFDRLRFDFNCPRPLTREELQQIEDQINAWISESHTTHTY 641

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM   +A A GA A+ G KY ++VRV+ +        S  LCGGTHV +T EI L  I+S
Sbjct: 642 IMALSEAKAKGAIAMFGEKYGEQVRVLDIPG-----VSMELCGGTHVHNTAEIGLFKIIS 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AGIRRIEAI G   R +L  +D  ++ L    K     ++ R+ ++  + +  Q 
Sbjct: 697 ESGVAAGIRRIEAIAGAAVRDYLQQRDSIVRELCDRFKAKPEEILDRISQLQADLKAQQK 756

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L +            + + + +   ++ VD + LK+  + L  K+ SG ++L
Sbjct: 757 ALEHLKAELALAKTQALLEQAKPVGNSHVLIASLAGVDPQGLKTAAEWLLNKLGSGAVVL 816

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                  K ++L+  ++D++ R  +A  L    A+V  GG GGGRP+ AQ+GG    K  
Sbjct: 817 ATQPAADKVNLLVAASQDVVQRGVHAGQLVAALAQVC-GGRGGGRPNFAQAGGSQPAKLA 875

Query: 887 QAIAGVASFLKK 898
           +A+    S LK+
Sbjct: 876 EALELAHSRLKE 887


>gi|160939113|ref|ZP_02086464.1| hypothetical protein CLOBOL_04007 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438076|gb|EDP15836.1| hypothetical protein CLOBOL_04007 [Clostridium bolteae ATCC
           BAA-613]
          Length = 887

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/907 (37%), Positives = 509/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P    VTT
Sbjct: 14  VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRNRVTT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI   W+ LT    LD  
Sbjct: 74  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWTWEFLTDVVGLDPD 129

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G+ A++I +    DNFW    +GPCGPCSE+++D+GE  
Sbjct: 130 RLYPSVYLDDDEAFGIWNKEIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEAF 188

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG     + +RYIE+WN VF QF+         L   +IDTGMGLER+A V+Q   
Sbjct: 189 GCGKPGCTVGCDCDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVVVQGVD 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + + +D  K L+    Q+   +Y+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGY
Sbjct: 249 SLFTVDTNKALLDRVCQLAHTEYQKDHETDVSLRIVTDHVKSCTFMISDGIMPSNEGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R LG     +  L   +       YPEL + + +I + L  E+E+F 
Sbjct: 309 VLRRLLRRAARHGRKLGIEGRFLAGLSETVIELSKDGYPELEEKQAMIFKVLSEEEEKFN 368

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + K  ++ L+G  AFKLYDT+G PLD+ ++IL  RG   +D   
Sbjct: 369 KTIDQGLSILGEMQDEMQKTGNKCLSGANAFKLYDTYGFPLDLTKEILEERGCT-VDEDG 427

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A++EQ+ +AR           +   +   +    T+FIGYD L              
Sbjct: 428 FAAAMKEQKEKARKARKTTNYMGADVTVYQSIDPSVTTEFIGYDRL-------------- 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V  +  + E+V+    GQK  ++ +QTPFY   GGQ GDTG    +
Sbjct: 474 ---------TADSRVTVLTTEEELVQALTDGQKGTIIVEQTPFYGTMGGQQGDTGVISNE 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D      G   H  ++ +G+ +   ++ L++   NR     NHSATHLL  AL
Sbjct: 525 NGAFKVEDTIHLQGGKVGHVGVMTKGMFQVGENVTLSVCAHNRALTCKNHSATHLLQKAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS +    LRFD TH   +T  E+K +E+ VN  I  +LPVVT++M  E
Sbjct: 585 RKVLGDHVEQAGSYVDAGRLRFDFTHFSAMTPDEIKKVEELVNQEIQASLPVVTQVMTLE 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D+VRVV +     G  S+ LCGGTHV +TG I    I+SE+ I 
Sbjct: 645 EAKKTGAMALFGEKYGDKVRVVRM-----GDFSTELCGGTHVPNTGTIAYFKIISEAGIA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    H    +E+L+  A   K +   +  +++ + EE + L   + K 
Sbjct: 700 AGVRRIEALTSEGLMKHYQEVEEELQEAARTAKTTPSALTSKIQSLLEEIKTLHSENEKL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + L        ++  +  ++  ++ VD   ++++ D L+ K+  G+I+L    +
Sbjct: 760 KSKLANDSLGDVMSQVKEVNGLKVLAARVAGVDMNGMRNLGDQLKDKLGEGVIVLA-CEQ 818

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++   T+    +  +A +L +  A ++GGGG GGRP+MAQ+GG N    D A+  
Sbjct: 819 DGKVNLMATATDSAQKKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPAGIDDALKK 877

Query: 892 VASFLKK 898
               +++
Sbjct: 878 AVETVEE 884


>gi|329120448|ref|ZP_08249113.1| alanine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327461906|gb|EGF08236.1| alanine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 992

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/969 (36%), Positives = 512/969 (52%), Gaps = 81/969 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FFQ  GH  + SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 31  MKTSELRQKFLDFFQSKGHTAVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 90

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+  I  AW+ LT  +  +
Sbjct: 91  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEVIPFAWEFLTSPEWLN 150

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L +TVY ED+EA+ +W  + G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 151 IPKEKLLVTVYAEDDEAYNIWHDVIGVPAERIVRIGDNKGSRYASDNFWQMGDTGPCGPC 210

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 211 TEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 270

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG++
Sbjct: 271 RMAAVMQGVHSNYEIDLFQDLLKAVARETGTA-FSMEEPSLKVIADHIRSCSFLIADGVM 329

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+P L  EMG AYPEL + +  I E L
Sbjct: 330 PSNEGRGYVLRRIIRRAVRHGYKLGQKNAFFYKLVPDLVKEMGGAYPELKEKQTHIMEVL 389

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQDIL 405
           R E+ RFG+TL++G+ L + V   +          +       +L    G+   ++    
Sbjct: 390 RGEEMRFGETLEKGMGLFNQVWDAMQFAKLESLLPMDGVGEPLRLTTADGVAFTVVSRNA 449

Query: 406 CARGLAGIDII-----------SFNQALEEQRSRARAHSLGLGSGT-TEKIWFSLKEKYG 453
                  +              +    + +++  A         G     I  S     G
Sbjct: 450 GNGKQIVVRPQVSGSLNESFAFNMEDVITKEKPEAHRAYGEALQGYLKNNIANSKLIMSG 509

Query: 454 ATQFIGYD------------------LLRGSKFMKEDRKVLCQKPPI------------- 482
              F  YD                   L    F +E      +                 
Sbjct: 510 EHIFKLYDTYGFPYDLTADMARELGIELDEEGFEREMEAQRARARAAQNFKANAQVAYDG 569

Query: 483 -------DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       + + V A+ + GE V +  +G+   VV D TPFYAE+GGQ+GD G   
Sbjct: 570 AETQFHGYDKRSLDATVLALYRDGEAVNQLNAGEAGIVVLDHTPFYAESGGQVGDVGFIF 629

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               R  + D QK    +  H   +  G L+   S+   +D   R  +  NHS THL+H 
Sbjct: 630 SGKNRFAVEDTQKIKAAVHGHFGTLVSGSLKVGDSICAEVDNAVREAIMRNHSVTHLMHK 689

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS    +  RFD++H + I++ E+  +E  VN  I  N+PV    M+
Sbjct: 690 ALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKVETMS 749

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            EDA  SGA  L G KY D VRV+++     G +S  LCGGTHV+ TG+I    I+SE  
Sbjct: 750 IEDAQKSGAVMLFGEKYGDFVRVITM-----GDYSIELCGGTHVTRTGDIGFFKIISEGG 804

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           I AGIRR+EAITG  A +    Q+  +K++ + +K     +V+ +++      + L+   
Sbjct: 805 IAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANTKALEKEL 864

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           AK K +L V        +   +     ++  I    +  L+ ++  L  K  + +I+L  
Sbjct: 865 AKAKAELAVHAGAKLLDNAKDLGTAKLVAAQIEAD-AAALREIVTDLTGKSDNAVILLAA 923

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +    K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG + ++    +
Sbjct: 924 V-NNSKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDASQVGTML 981

Query: 890 AGVASFLKK 898
                ++++
Sbjct: 982 DSAEGWVRE 990


>gi|255284141|ref|ZP_05348696.1| alanine--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255265315|gb|EET58520.1| alanine--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 879

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/911 (39%), Positives = 515/911 (56%), Gaps = 50/911 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    V+ +R  FL+FFQ  GH  + S SL+P ND +L+  NSGM P K  FTG E P  
Sbjct: 1   MKQYGVNELRKMFLDFFQSKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGAEIPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+  
Sbjct: 61  RRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY ED+EAF +W K  G+ A++I R    DNFW     GPCGPCSEI++D
Sbjct: 117 GLDADRLYPSVYLEDDEAFDIWNKEVGIPAERIFRFGKEDNFWEHG-AGPCGPCSEIYYD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G PG     + +RYIE+WN VF QFE         L + +IDTGMGLER+A V
Sbjct: 176 RGEKYGCGKPGCTVGCDCDRYIEVWNNVFTQFENDGNGNYTELQQKNIDTGMGLERLAVV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D  + L     +    +Y+ +    V+ R+I DH+RS++F+I+DGI+P N
Sbjct: 236 VQDVDSIFDVDTIEALRNKVCEFAHTEYKTDEKKDVSIRLITDHIRSATFMISDGIMPTN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG +   +  L   +       YPEL + K  I + L  E
Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGISGKFLSELSATVIEGSKDGYPELEEKKDFIFKVLTQE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +++F KT+D+GL +L G+ S +  +  + L G  AF LYDT+G PLD+ ++IL  +G   
Sbjct: 356 EDKFNKTIDQGLSILSGMESKMEAEGVKTLAGRDAFTLYDTYGFPLDLTKEILEEKGYT- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR++AR           +   +   +    T+F+GYD L         
Sbjct: 415 IDEEGFKAAMEEQRTKARNAREVTNYMGADATVYDEIDPSVTTEFVGYDKLEY------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S +  +  + EI E    G+   +  +QTPFYA  GGQ GDTG
Sbjct: 468 ----------------TSKITVLTTEKEITEAVSDGENATIFVEQTPFYATMGGQEGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D  K   G   H   V +G+ +    + L++  + R     NHSATHL
Sbjct: 512 VIRTADAEFEVEDTIKLLGGKVGHVGRVTKGMFKVGDEVTLSVSPKKRADTCKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LG+HV Q GS +TPD LRFD  H  P+T+ E+   E  VN+ IA +LPVVT+
Sbjct: 572 LQKALKTVLGAHVEQKGSLVTPDRLRFDFAHFAPMTAEEIAKTEALVNEQIAASLPVVTQ 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN E+A  +GA AL G KY D VRVVS+     G  S  LCGGTHVS+TG I    IVS
Sbjct: 632 IMNIEEAKKTGAMALFGEKYADDVRVVSM-----GDFSKELCGGTHVSNTGMITTFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG+RRIEA+TG    ++    +++L   A  +K +   ++ R+  + EE +  Q 
Sbjct: 687 ESGIAAGVRRIEALTGDGVFAYYHNLEQQLAEAAKAVKATPATLLDRLHHLTEELKAAQS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L  + L     +  ++  V  ++  +  VD   L+ + D L++K+  G+I+L
Sbjct: 747 EVESLKSRLAKDALGDVMDNVKEVKGVKLLAAKLEGVDMNGLRDLGDQLKEKLGDGVIVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K S+L + T+       +A +L +  A ++GGGG GGRP+MAQ+GG N    +
Sbjct: 807 ASV-NDGKVSLLSMATDGAQKQGAHAGNLIKGIAALVGGGG-GGRPNMAQAGGKNPAGVE 864

Query: 887 QAIAGVASFLK 897
            A+A  A  L+
Sbjct: 865 DALAKAAEVLE 875


>gi|253578839|ref|ZP_04856110.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849782|gb|EES77741.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 879

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/911 (39%), Positives = 518/911 (56%), Gaps = 50/911 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    V+ +R  FL+F +  GH ++ S SL+P  D +L+  N+GM P K  FTG E P  
Sbjct: 1   MKKYGVNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEIPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             V+T QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+  
Sbjct: 61  TRVSTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY ED+EAF +W K  G+ AD+I R    DNFW     GPCGPCSEI++D
Sbjct: 117 GLDADRLYPSVYLEDDEAFDIWNKEIGIPADRIFRFGKEDNFWEHG-AGPCGPCSEIYYD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G PG     + +RY+E+WN VF QFE         L + +IDTGMGLER+A V
Sbjct: 176 RGEKYGCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D    L     +++G +Y    N+ V+ R+I DH+RS++F+I+DGI+P N
Sbjct: 236 VQDVDSIFDVDTICALRNLVCEISGKEYEKNYNDDVSIRLITDHIRSATFMISDGIMPTN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG     +  L   +     + YPEL + K  I + L +E
Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIEGTFLAKLSEEVINGSKAGYPELEEKKEFIFKVLTNE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           + +F KT+D+GL +L  +   +    ++ L+G+ AFKLYDT+G P+D+ ++IL  +G   
Sbjct: 356 ENQFNKTIDQGLRILGEMEDEMKAAGEKTLSGENAFKLYDTYGFPMDLTKEILEEKGY-D 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F + +EEQR++AR+          +   +   +    T+F+GYD L         
Sbjct: 415 IDEAGFQKCMEEQRNKARSAREVTNYMGADATVYDDIDVNVTTEFVGYDHL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  +  + EIV   + GQK  V  +QTPFYA  GGQ+GDTG
Sbjct: 466 --------------TFDSKVTVLTTETEIVNSLMEGQKGTVFTEQTPFYATMGGQVGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  +  + D  K   G F H   +E G++ T  ++ L +D   RR    NHSATHL
Sbjct: 512 VIETANGKFVVEDTIKLRGGKFGHVGHMESGMISTGETVSLKVDEAARRDTEKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LG+HV Q GS +TPD LRFD  H + +T+ E+  +E  VN  I   L V T 
Sbjct: 572 LQKALKTVLGNHVEQKGSLVTPDRLRFDFAHFQAMTADEIAQVEALVNKEIQAGLEVRTD 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E+A  SGA AL G KY+ +VRVVS+     G  S  LCGGTHV++TG IML  IVS
Sbjct: 632 VMDVEEAKKSGAMALFGEKYDQKVRVVSM-----GDFSKELCGGTHVANTGNIMLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG+RRIEA+TG     +   Q+E L   A  LK +   +V ++  +  E + L  
Sbjct: 687 ESGIAAGVRRIEALTGNGVLEYYKKQEELLHEAAKALKANPAEIVEKIGHLQGEVKALSS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +L    L        ++  V  ++  +  VD   L+ + D L+ K+  G+++L
Sbjct: 747 ENESLKSKLAQGALGDVMDKVVEVKGVKLLAAKVDGVDMNGLRDLGDQLKGKLGEGVVLL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             ++ E K ++L + T+       +A +L +  A ++GGGG GGRP+MAQ+GG N  KA 
Sbjct: 807 AAVNGE-KVNLLAMATDAAQKAGAHAGNLIKAVAAIVGGGG-GGRPNMAQAGGKNPAKAQ 864

Query: 887 QAIAGVASFLK 897
           +A+   A  L+
Sbjct: 865 EAVDAAAGILE 875


>gi|325661656|ref|ZP_08150280.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472183|gb|EGC75397.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 879

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/912 (39%), Positives = 517/912 (56%), Gaps = 50/912 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  
Sbjct: 1   MKQYGVNELRKMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AIQ +W+ LT+  
Sbjct: 61  KRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIQWSWEFLTEVV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY +DEEAF++W K  G+ A++I +    DNFW     GPCGPCSEI++D
Sbjct: 117 GLDADRLYPSVYVDDEEAFEIWNKEMGIPAERIFKFGKADNFWEHG-AGPCGPCSEIYYD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V
Sbjct: 176 RGEKYGCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGNYSELEQKNIDTGMGLERLASV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D  K L     +   + Y+   +  V+ R+I DH+RS++F+I+DGI+P N
Sbjct: 236 VQDVDSIFDVDTVKALRDKVCEAANVTYKKDADQDVSIRLITDHIRSATFMISDGIMPTN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG     +  L   +       YPEL + K  I   L  E
Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIEGKFLAKLSETVIEGSKDGYPELDEKKDFIFNVLTQE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +++F KT+D+GL +L  +   + +  +++L+G+ AFKLYDT+G PLD+ ++IL  +G  G
Sbjct: 356 EDKFDKTIDQGLHILSVMQEEMNQAGEKVLSGENAFKLYDTYGFPLDLTKEILEEKGY-G 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+E+QR +AR           +   +   +    T+F+GYD L         
Sbjct: 415 IDEEGFQAAMEKQRVQAREARKETNYMGADATVYDEIDPSVTTEFVGYDTL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  + EI E    GQ+  +  ++TPFYA  GGQ GDTG
Sbjct: 466 --------------SCDSKITVLTTESEITEAVADGQRATIFVEKTPFYATMGGQEGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + +  K   G F H   V +G+ RT  ++ L +  + R     NHSATHL
Sbjct: 512 IIHTADAEFAVEETIKLLGGKFGHIGRVTKGMFRTGDTVTLEVRSKERLNTCKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +TPD LRFD  H   +T  E++++E  VN+ IA+N PVVT 
Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTKEEIEAVEALVNEEIAKNNPVVTE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +MN E+A  +GA AL G KY + VRVV++     G  S  LCGGTHVS+TG I    IVS
Sbjct: 632 VMNVEEAKKTGAMALFGEKYEEDVRVVTM-----GDFSKELCGGTHVSNTGLITTFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+TG    ++   Q++KL   A  LK +  N+  ++  +  E + L  
Sbjct: 687 ESGVAAGVRRIEALTGDGVFAYYKAQEQKLAEAAKLLKATPENLAEKISHLLAETKSLHS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +   E +        +I  V  ++  + +VD   L+ + D L++K+  G++++
Sbjct: 747 EIESLKSKAAQEAVGDVMNQVEEICGVKVLAVRVEDVDMGGLRELGDQLKEKLGEGVVVI 806

Query: 828 VGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              +   K S++   TE  L    +A +L +  A ++GGGG GGRP+MAQ+GG N    D
Sbjct: 807 ASAA-GGKVSLMATATEGALKKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPEGID 864

Query: 887 QAIAGVASFLKK 898
            A++     L +
Sbjct: 865 AALSKAKEVLAE 876


>gi|331084749|ref|ZP_08333837.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330410843|gb|EGG90265.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 879

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/912 (39%), Positives = 516/912 (56%), Gaps = 50/912 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  
Sbjct: 1   MKQYGVNELRKMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AIQ +W+ LT+  
Sbjct: 61  KRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIQWSWEFLTEVV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY +DEEAF++W K  G+ A++I +    DNFW     GPCGPCSEI++D
Sbjct: 117 GLDADRLYPSVYVDDEEAFEIWNKEMGIPAERIFKFGKADNFWEHG-AGPCGPCSEIYYD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V
Sbjct: 176 RGEKYGCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGNYSELEQKNIDTGMGLERLASV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D  K L     +   + Y+   +  V+ R+I DH+RS++F+I+DGI+P N
Sbjct: 236 VQDVDSIFDVDTVKALRDKVCEAANVTYKKDADQDVSIRLITDHIRSATFMISDGIMPTN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG     +  L   +       YPEL + K  I   L  E
Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIEGKFLAKLSETVIEGSKDGYPELDEKKEFIFNVLTQE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +++F KT+D+GL +L  +   + +  +++L+G+ AFKLYDT+G PLD+ ++IL  +G  G
Sbjct: 356 EDKFDKTIDQGLHILSVMQEEMNQAGEKVLSGENAFKLYDTYGFPLDLTKEILEEKGY-G 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+E+QR +AR           +   +   +    T+F+GYD L         
Sbjct: 415 IDEEGFQAAMEKQRVQAREARKETNYMGADATVYDEIDPSVTTEFVGYDTL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  + EI E    GQ+  +  ++TPFYA  GGQ GDTG
Sbjct: 466 --------------SCDSKITVLTTESEITEAVADGQRATIFVEKTPFYATMGGQEGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + +  K   G F H   V +G+  T  ++ L +  + R     NHSATHL
Sbjct: 512 IIHTADAEFAVEETIKLLGGKFGHIGRVTKGMFGTGDTVTLEVKSKERLNTCKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +TPD LRFD  H   +T  E++++E  VN+ IA+N PVVT 
Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTREEIEAVEALVNEEIAKNNPVVTE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +MN E+A  +GA AL G KY + VRVV++     G  S  LCGGTHVS+TG I    IVS
Sbjct: 632 VMNVEEAKKTGAMALFGEKYEEDVRVVTM-----GDFSKELCGGTHVSNTGLITTFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+TG    ++   Q++KL   A  LK +  N+  ++  +  E + L  
Sbjct: 687 ESGVAAGVRRIEALTGDGVFAYYKAQEQKLAEAAKLLKATPENLAEKISHLLAETKSLHS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +   E +        +I  V  ++  + +VD   L+ + D L++K+  G++++
Sbjct: 747 EIESLKSKAAQEAVGDVMNQVEEICGVKVLAVRVEDVDMGGLRELGDQLKEKLGEGVVVI 806

Query: 828 VGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              +   K S++   TE  L    +A +L +  A ++GGGG GGRP+MAQ+GG N    D
Sbjct: 807 ASAA-GGKVSLMATATEGALKKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPEGID 864

Query: 887 QAIAGVASFLKK 898
            A++     L +
Sbjct: 865 AALSKAKEVLAE 876


>gi|193213512|ref|YP_001999465.1| alanyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|193086989|gb|ACF12265.1| alanyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 885

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/922 (36%), Positives = 497/922 (53%), Gaps = 67/922 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR +FL+FF    H ++ S+ +IP  DPTL+FTN+GM  FK++F G+    Y   
Sbjct: 1   MNSREIRQSFLDFFAAKEHRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLGKGTREYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+L+T  + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIGWAWELMTDVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +DEE+FKLW+  + +    I++    DNFW M ETGPCGPCSEI  D   
Sbjct: 121 KERLYATVYHDDEESFKLWQSETDIEHSHILKFGDKDNFWEMGETGPCGPCSEIHIDLTP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GG P  +    R IE+WNLVF+Q+++Q       LP+  +DTGMG ER+  VLQ K+
Sbjct: 181 DGSGG-PLVNVGDHRVIELWNLVFIQYDRQADGSLQPLPQKHVDTGMGFERVTAVLQGKS 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F  L +   ++TG++Y    +    +  RVI DH R+ +F ++DG +P NEGR
Sbjct: 240 SNYDSDVFTPLFEKITELTGVRYTASLDSATDIAMRVIADHCRTLTFALSDGAMPGNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ YA  LG  EP+M  ++  L   MG  +PEL + +  +E+ +R+E+E 
Sbjct: 300 GYVLRRILRRAVRYAGTLGCHEPIMYKMVEVLVRTMGDVFPELEKQQPTVEKIIRAEEES 359

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL RG  + + V++         ++G+ AFKLYDT G PLD+ + +    G  GID 
Sbjct: 360 FLVTLGRGTEIFNEVVAGMKTSGSTTISGEDAFKLYDTFGFPLDLTRLMAAEVGF-GIDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   + EQ++RAR           +   +        T+F+GYD L  S  +   +  
Sbjct: 419 EGFEHCMTEQKTRARMDRKDKMQVQDDGGEWQWFAPEAPTEFVGYDTLETSATLTAVK-- 476

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                           G ++ VV D+TPFYAE+GGQ+GD G   
Sbjct: 477 ------------------------------TGGDRLMVVLDRTPFYAESGGQVGDHGTIE 506

Query: 536 GDGIRLQITDVQKKAEGIFV-----------HHAIVERGILRTEMSLVLTIDYQNRRQLS 584
            D  RL +TD +K  E +                          +S+   +D   R    
Sbjct: 507 TDDYRLDVTDTRKDGELVIHFVTSARDKVRDCAVSPADLSFEGAVSVEAAVDRDRRVATE 566

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS +TP+ LRFD +H   ++  E++ +E  VN  I 
Sbjct: 567 RNHTATHLLHAALRKVLGEHVQQKGSLVTPERLRFDFSHFSKVSPEEMEQVEHEVNAQIR 626

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +   V     +  E+A+  GA A  G KY DRVRVV V        S  LCGGTHV + G
Sbjct: 627 KAAGVTKHADVPYEEALELGALAFFGDKYADRVRVVDVPG-----ISIELCGGTHVGNIG 681

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEE 762
           +I ++ IVSESS+ AGIRRIEA+TG  A + L  +   L+ + + LK+      G +++E
Sbjct: 682 QIGMVKIVSESSVAAGIRRIEAVTGAAAEALLWQEYRNLQEIKNLLKLKADEEAGPKIKE 741

Query: 763 IWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + +E + L     + +L     QL+    S  +I     M+  +  +   EL+    AL+
Sbjct: 742 LLDEKKALDKQLQESRLSGLLNQLSATLASAAEIGGCRIMTEQLDGLGGDELRQAAVALR 801

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++      +L  ++ + K  ++   +++ +   + NA  L + +A  + GG GGG+P +A
Sbjct: 802 EQASCAAGLLCSVT-DGKVFLVGFASDEAVKLKKINAGKLVKEAAACVKGG-GGGKPELA 859

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
            +GG + +   +AI    + +K
Sbjct: 860 TAGGKDPDGIGKAIETFVASVK 881


>gi|153853058|ref|ZP_01994467.1| hypothetical protein DORLON_00452 [Dorea longicatena DSM 13814]
 gi|149753844|gb|EDM63775.1| hypothetical protein DORLON_00452 [Dorea longicatena DSM 13814]
          Length = 887

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/906 (38%), Positives = 514/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 14  VNELRRMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI   W+ LT+   LD  
Sbjct: 74  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWTWEFLTEVVGLDPD 129

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y +D+EAF++W K  G+ A++I R    DNFW     GPCGPCSE+++D+GE  
Sbjct: 130 RLYPSIYQDDDEAFEIWNKEIGIPAERIFRFGKEDNFWEHG-AGPCGPCSEVYYDRGEKY 188

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG     E +RY+EIWN VF QF+         L + +IDTGMGLER+A ++Q+  
Sbjct: 189 GCGQPGCTVGCECDRYMEIWNNVFTQFDNDGHNNYTELEQKNIDTGMGLERLACIVQDVD 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L      + G++Y+ ++    + RV+ DH+RS +F+I+DGILP+N GRGY
Sbjct: 249 SMFDIDTLKALRDHVCNMAGVEYQKDDNTDTSIRVLTDHIRSVTFMISDGILPSNSGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     ++ L   +       YPEL + K  I   +  E+ +F 
Sbjct: 309 VLRRLLRRACRHGRLLGIKGAFLVKLAQTVIDGSKDGYPELEEKKDFIFNVIAKEEAQFN 368

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + K+   +L+G  AFKLYDT+G P+D+  +IL  +GL   D   
Sbjct: 369 KTIDQGLSILADMEEEMKKNGEAVLSGKNAFKLYDTYGFPIDLTSEILEEKGLT-YDEKG 427

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A +EQR+++            +   +   +   +++F+GY+ L              
Sbjct: 428 FEEAQKEQRAKSEGTFGTHNYSGKDASVYDELDAELSSEFVGYNQLE------------- 474

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                     V S V A+  + E+V+    G K  ++  +TPFYA  GGQ  D G    +
Sbjct: 475 ----------VESDVTAMTSETEVVDALTDGDKGTIIVAKTPFYATMGGQEADKGIICTE 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + DV K A G F H   V +G+++    + L +D +NR     NHSATHLL  AL
Sbjct: 525 DGEFVVEDVVKLAGGKFGHVGQVTKGMIKVGDKVTLKVDKENRALAENNHSATHLLQKAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS      LRFD TH   +T+ EL+ +ED VN+ I +NLPVV + M  E
Sbjct: 585 RMVLGNHVEQAGSLNNAQRLRFDFTHFSAMTAEELQKVEDIVNEKIRENLPVVIKNMPIE 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GAAAL G KY D VRVVS+     G  S   CGGTHV +TG IM   I+SE+ + 
Sbjct: 645 EAKKTGAAALFGEKYGDIVRVVSM-----GDFSIEFCGGTHVKNTGNIMAFKILSETGVA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +   Q++KL   A  LK +  N+  +V  +  E + L+      
Sbjct: 700 AGVRRIEALTSKGLLDYYSAQEKKLHETAKLLKATPENIEEKVSHLMNENKVLKGEVESL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + +        ++  V F++  +  VD   L+ + D L++K+  G+I+L  +  
Sbjct: 760 KSKLAKDAMGDVMNQVEEVKGVKFLATSLEGVDMNGLRDLGDQLKEKLGEGVILLASV-N 818

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K S++   T+  +    +A +L +  AK++GGGG GGRP+MAQ+GG N    + A+  
Sbjct: 819 DGKVSLMATATDGAMKQGAHAGNLIKAVAKLVGGGG-GGRPNMAQAGGKNPAGVEDALKA 877

Query: 892 VASFLK 897
               L+
Sbjct: 878 AKEALE 883


>gi|260587849|ref|ZP_05853762.1| alanine--tRNA ligase [Blautia hansenii DSM 20583]
 gi|260542114|gb|EEX22683.1| alanine--tRNA ligase [Blautia hansenii DSM 20583]
          Length = 892

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/905 (39%), Positives = 514/905 (56%), Gaps = 48/905 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  + S SL+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 19  VNELRKMFLEFFESKEHLAMKSFSLVPRNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 78

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD +
Sbjct: 79  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIAWSWEFLTEVVGLDPQ 134

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y+EDEEAF++W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 135 RLYPSIYEEDEEAFEIWNKEMGIPAERIFRFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 193

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+EIWN VF QFE   +     L + +IDTGMGLER+A+V+Q+  
Sbjct: 194 GCGSPDCTVGCECDRYMEIWNNVFTQFESDGEGNYTELVQKNIDTGMGLERLASVVQDVD 253

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     ++   +Y+ +    V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 254 SIFDVDTLCALRTKVCELAHTEYKKDAAKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 313

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I + L  E+E+F 
Sbjct: 314 VLRRLIRRAARHGRLLGIEGKFLAELSAVVIEGSKDGYPELEEKKDFIFQVLTKEEEQFN 373

Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + +         L+G+ AFKLYDT+G PLD+ ++IL  +G   ID   
Sbjct: 374 KTIDQGLNILSEMEAAMKAEGKTELSGEAAFKLYDTYGFPLDLTKEILEEKGCT-IDEAG 432

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A++EQR +AR           +   +   +    T+F+GYD L              
Sbjct: 433 FKAAMDEQREKARIARSTTNYMGADATVYDEIDVNVTTEFVGYDSL-------------- 478

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S +  +  + EI E     Q+  V  +QTPFYA  GGQ GD G     
Sbjct: 479 ---------TCTSKITVLTTEDEITEALTEDQRGTVFVEQTPFYATMGGQQGDKGVITLG 529

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D      G   H  ++ +G+L+T   + L +  + R     NHSATHLL  AL
Sbjct: 530 DAEFKVEDTINLRGGKVGHVGVLTKGMLKTGDVVTLQVCEKYRMNSCKNHSATHLLQKAL 589

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TPD LRFD  H + +T+ EL ++E+ VN  I   LPVVT +M+ E
Sbjct: 590 KTVLGSHVEQKGSLVTPDRLRFDFAHFQSMTAEELAAVEEIVNKEIQAALPVVTEVMSIE 649

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY + VRVVS+     G  S  LCGGTHVS+TG I    I+SES I 
Sbjct: 650 EAKKVGAMALFGEKYGEEVRVVSM-----GDFSKELCGGTHVSNTGVITTFKIISESGIA 704

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG    ++    ++K   +A+ LK S   +  ++  +  E + L   +   
Sbjct: 705 AGVRRIEALTGDGVFAYYKEIEKKQAEIAAMLKTSPSEIEEKIAHLQAEVKALHSENESL 764

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++  E +         +  V  ++  +++VD   L+ + D L++K+  G+++L  ++ 
Sbjct: 765 KAKMAQEAVGDVLNQVQDVKGVKLLAVSLTDVDMNGLRDLGDQLKEKLGEGVVVLASVA- 823

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S+L +VTE       +A +L +  A ++GGGG GGRP+MAQ+GG N +K  +A+  
Sbjct: 824 GGKVSLLAMVTEQAQKAGAHAGNLIKGMAAIVGGGG-GGRPNMAQAGGKNPDKVPEALEA 882

Query: 892 VASFL 896
            A+ L
Sbjct: 883 AANIL 887


>gi|303326376|ref|ZP_07356819.1| alanine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302864292|gb|EFL87223.1| alanine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 892

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/917 (39%), Positives = 515/917 (56%), Gaps = 44/917 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +L+FF ++ HE++PS  LIP NDP+L+FTN+GMV FK +F G+EK  Y  
Sbjct: 1   MLTAQEIRRRYLDFFLRHRHEIVPSGPLIPPNDPSLLFTNAGMVQFKKLFLGEEKRAYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKC+R  GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK  AI  AW  +T+E  L
Sbjct: 61  AASCQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAIAWAWQFVTEELQL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+ ED+EA ++WK ++GL+  +IIR+   DNFW+M +TGPCGPCSEI+ DQG
Sbjct: 121 PKEKLWVTVFREDDEAAEIWKDVAGLTDARIIRMGEKDNFWTMGDTGPCGPCSEIYIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +R++EIWNLVF QF+Q     R +L   +IDTGMGLER+A V Q
Sbjct: 181 EDMSCGPDCGIGKCDCDRFLEIWNLVFTQFDQAADGSRALLAAPNIDTGMGLERIAAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY------EGNNIVNHRVIVDHLRSSSFLIADGILP 292
            K +N+D DLF+ +IQ +  + G+ Y        +     RVI DH RS++FLIA+G+LP
Sbjct: 241 GKRSNFDCDLFQEIIQYAAGLAGVAYSFSAPDTNDVDTALRVIADHSRSAAFLIAEGVLP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRR++RRA+ +A L+G  EP M  +   +   MG AYP+L+++   I+  + 
Sbjct: 301 SNENRGYVLRRLIRRALRFATLMGVHEPFMHKVARKVTEVMGEAYPDLLESADFIDRAVF 360

Query: 353 SEDERFGKT--LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF  T      L+  +          ++ G   FKLYDT+G PLDI+ D+   RG 
Sbjct: 361 EEEQRFSLTLEKGLHLLEEELQRLEAAGQTVIPGAFCFKLYDTYGFPLDIVTDVAGKRGF 420

Query: 411 AGIDIISFNQALEEQRSRARAHSL-----GLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              D   F   + EQR RAR H       G G+G  +  +  L +    + F+GY+ L  
Sbjct: 421 TA-DGSGFEAHMREQRERAREHQKKGGLLGQGAGEGDAAFKKLADDGLRSVFVGYESL-- 477

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                  +S V A++   G  V+    G+    V ++TPFY E+
Sbjct: 478 ---------------------TAASPVTALLDAGGVPVDHLGEGETGFAVTEKTPFYGES 516

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ GD G          +   +K A  + VH   V RG +       L++D  +R+  +
Sbjct: 517 GGQAGDAGLLAVVSGEAGVLTARKPAPDLIVHEIEVLRGEVHLGQEATLSVDADSRQSTA 576

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ THLLH AL   LG+HV Q GS +    LRFD +H   +T  EL ++E +VN  I 
Sbjct: 577 RNHTCTHLLHAALRRTLGTHVKQAGSLVDSRRLRFDFSHIAALTPEELAAVERDVNRAIM 636

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +LPV  R M RE+A+A GA AL G KY + VRV++V  E     S  LCGGTH+S TG+
Sbjct: 637 ADLPVAAREMPREEALAGGAMALFGEKYGETVRVLTVGCEGREPESMELCGGTHLSRTGQ 696

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
                IV+E+ + AG RRIEA+TG  A    + Q  +  +LA  LK   G +  RV+ + 
Sbjct: 697 AGSFLIVAETGVAAGTRRIEAVTGWNAYGLAVEQRAEAAALAGLLKSKPGQLAERVQTLQ 756

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            E +K++    K                +I  V  ++  +  V  K L+ +MD ++ ++ 
Sbjct: 757 TEVKKMRKASEKAAAAPVTGADLLRRAEEINGVRLLAARLENVPVKALREIMDDVRSRLS 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S  +  +   +E K  +L+ V++DL  RF A  L +  A   GG G GGRP +AQ+GG  
Sbjct: 817 SAGVACLATVEEGKVGLLLYVSKDLHGRFTAPALIKEVAAPCGGAG-GGRPDLAQAGGTK 875

Query: 882 GNKADQAIAGVASFLKK 898
               D+A A + + ++K
Sbjct: 876 PEGIDEAFAVLKTLIEK 892


>gi|157826336|ref|YP_001494056.1| alanyl-tRNA synthetase [Rickettsia akari str. Hartford]
 gi|205830190|sp|A8GQ73|SYA_RICAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157800294|gb|ABV75548.1| alanyl-tRNA synthetase [Rickettsia akari str. Hartford]
          Length = 878

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/901 (45%), Positives = 561/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    
Sbjct: 5   TTEEVRSKFITYFKTNNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQTKRPYHTAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAASCWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K  R  LP+ SIDTGMGLERM  VLQ  +
Sbjct: 185 IYGGLPGTKYEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVS 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKIEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRAM +A +LG  EPLM  LLP L   MGS YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRAMRHAHMLGSQEPLMYKLLPKLVDLMGSVYPELKRAESFISRILEQEEIRFKTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G++AFKLYDT+G PLD+ +DIL  R    ID   F + 
Sbjct: 365 LERGLKLLTEETETLKKGNELSGEIAFKLYDTYGFPLDLTEDILKNRD-ISIDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLAQKERARKAWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAECKIIALIKDNNLVNDIKKIDTQFLLISNQTPFYGESGGQMGDIGTIFAKDSD 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I  H  I+++G +    S   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 IEVIDTLKYLGSIIAHKCILKKGQINVGDSANFSIDIKYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T  E+ SIED VN+II  N  V T +M  EDA+
Sbjct: 581 LGQHVTQKGSLVAPTYLRFDISHSKAVTHEEITSIEDKVNEIIRDNHEVNTTLMTTEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             G  AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGVMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGSFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  +D  LKS+ + LK ++  +V +V    E  ++L+    K    
Sbjct: 696 RRIEAVCGEFVIKLIREKDSLLKSIENSLKTNKNELVTKVNNTLERNKELEKELEKTHLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +     I  V  +   I  +D+K L+     L  K++  I++ +  + + K
Sbjct: 756 RLDLSIEQIEKQAEDIKGVKLIYRHIENLDNKVLRQAAANLTNKVEDLIVVYITGNND-K 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + SF
Sbjct: 815 LSITVAVSKAITDKYNACIIAKELSLFLGGSGGGGQASLAQAGGSDIGKLTNIHEKLYSF 874

Query: 896 L 896
           +
Sbjct: 875 I 875


>gi|331083851|ref|ZP_08332960.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330403276|gb|EGG82836.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 879

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/905 (39%), Positives = 516/905 (57%), Gaps = 48/905 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  + S SL+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 6   VNELRKMFLEFFESKEHLAMKSFSLVPRNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD +
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIAWSWEFLTEVVGLDPQ 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y+EDEEAF++W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYEEDEEAFEIWNKEMGIPAERIFRFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+EIWN VF QFE   +     L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFESDGEGNYTELVQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     ++   +Y+ +    V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTLCALRTKVCELAHTEYKKDAAKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I + L  E+E+F 
Sbjct: 301 VLRRLIRRAARHGRLLGIEGKFLAELSAVVIEGSKDGYPELEEKKDFIFQVLTKEEEQFN 360

Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + +         L+G+ AFKLYDT+G PLD+ ++IL  +G   ID   
Sbjct: 361 KTIDQGLNILSEMEAAMKAEGKTELSGEAAFKLYDTYGFPLDLTKEILEEKGCT-IDEAG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A++EQR +AR           +   +   +    T+F+GYD L              
Sbjct: 420 FKAAMDEQREKARIARSTTNYMGADATVYDEIDVNVTTEFVGYDSL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S +  +  + EI+E     Q+  V  +QTPFYA  GGQ GD G     
Sbjct: 466 ---------TCTSKITVLTTEDEIIEALTEDQRGTVFVEQTPFYATMGGQQGDKGVITLG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D      G   H  ++ +G+L+T   + L +  + R     NHSATHLL  AL
Sbjct: 517 DAEFKVEDTINLRGGKVGHVGVLTKGMLKTGDVVTLQVCEKYRMNSCKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TPD LRFD  H + +T+ EL  +E+ VN  I   LPVVT +M+ E
Sbjct: 577 KTVLGSHVEQKGSLVTPDRLRFDFAHFQSMTAEELAKVEEIVNKEIQAALPVVTEVMSIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY + VRVVS+     G  S  LCGGTHVS+TG I    I+SES I 
Sbjct: 637 EAKKAGAMALFGEKYGEEVRVVSM-----GDFSKELCGGTHVSNTGVITTFKIISESGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG    ++    ++K   +A+ LK S   +  ++  +  E + L   +   
Sbjct: 692 AGVRRIEALTGDGVFAYYKEIEKKQAEIAAMLKTSPSEIEEKIAHLQAEVKALHSENESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++  E +        ++  V  ++  +++VD   L+ + D L++K+  G+++L  ++ 
Sbjct: 752 KAKMAQEAVGDVLNQVQEVKGVKLLAVSLTDVDMNGLRDLGDQLKEKLGEGVVVLASVA- 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S+L +VTE       +A +L +  A ++GGGG GGRP+MAQ+GG N +K  +A+  
Sbjct: 811 GGKVSLLAMVTEQAQKAGAHAGNLIKGMAAIVGGGG-GGRPNMAQAGGKNPDKVPEALET 869

Query: 892 VASFL 896
            A+ L
Sbjct: 870 AANIL 874


>gi|229824851|ref|ZP_04450920.1| hypothetical protein GCWU000182_00200 [Abiotrophia defectiva ATCC
           49176]
 gi|229790854|gb|EEP26968.1| hypothetical protein GCWU000182_00200 [Abiotrophia defectiva ATCC
           49176]
          Length = 888

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/912 (38%), Positives = 512/912 (56%), Gaps = 42/912 (4%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M +  V+ +R  FLEFF+K GH  + S SL+P ND +L+  NSGM P K  FTGQE P  
Sbjct: 1   MKSYGVNELRRMFLEFFEKKGHLKMNSFSLVPHNDNSLLIINSGMAPLKPYFTGQEIPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V T QKC+R G    D+DNVG+T RH TFFEMLGNFSFG YFKE AI  AW+ LT+  
Sbjct: 61  KRVCTCQKCIRTG----DIDNVGKTARHGTFFEMLGNFSFGDYFKEEAIPWAWEFLTETV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            +   RLY +VY +D EAF++W K   +SA++I +    DNFW    +GPCGPC+EI+FD
Sbjct: 117 GIPADRLYPSVYVDDNEAFEIWNKKMNISAERIFKFGKEDNFWEHG-SGPCGPCTEIYFD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G PG     + +RY+E+WN+VF QF+   K     L + +IDTGMGLER+A  
Sbjct: 176 RGEKYGCGKPGCTVGCDCDRYMEVWNVVFSQFDNDGKGNYSDLEQKNIDTGMGLERLAVA 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D    L     ++   KY     N ++ RVI DH+RS++F+I+DGI+P+N
Sbjct: 236 VQDVDSIFDVDTLLALRNKVCEIADKKYKDNEKNDISIRVITDHIRSATFMISDGIMPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  + +LLG     ++ L  A+       YPEL + +  I   +  E
Sbjct: 296 EGRGYVLRRIIRRADRHGKLLGIDGAFLVGLAKAVIAGSKDGYPELAEKQDFILNVIEQE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F KT+++GL +L+G+   +     + ++G+ AFKLYDT+G P+D+ ++IL  +G+  
Sbjct: 356 EEKFEKTINQGLEILEGIQKDMEAKGVKTMSGEDAFKLYDTYGFPIDLTKEILEEKGM-D 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID  +F QA++ Q+  AR           +   +   +    ++FIGYD       +   
Sbjct: 415 IDEEAFKQAMKVQKDTARNARKTTSYMGADATIYEQIDPAINSEFIGYDKTEAEGKIVAL 474

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
             V  ++                 ++  I E    G    V+ D TPFYA  GGQLGD G
Sbjct: 475 VSVGSEEDG---------------EESAISEALTDGMTGAVITDVTPFYATKGGQLGDIG 519

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D    A     H   V +G+ +    + L +D +NR     NHSATHL
Sbjct: 520 VITVGDAVFEVKDTIPVAGSKIAHIGKVIKGMFKIGDKVTLKVDAENRMATCRNHSATHL 579

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q+GS       RFD +H K +T  E+K++E  VN+ IA+++PV T+
Sbjct: 580 LQKALREVLGTHVEQSGSYQDAGRTRFDFSHFKAMTPEEIKAVEKLVNEKIAESIPVDTK 639

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E+A  SGA AL G KY D VRVV +     G  S   CGGTHV +TG I    I+S
Sbjct: 640 VMSIEEAKKSGAMALFGEKYGDEVRVVGM-----GDFSKEFCGGTHVKNTGMIGQFKIIS 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AGIRRIEAITG     +    +  +   A  LK S   +V + + + EE + LQ 
Sbjct: 695 ESGVAAGIRRIEAITGNNVIKYYENLENTIAEAAKMLKASPDKLVEKAKHLMEELKSLQS 754

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +   E L        +I  V  ++  I + D  EL+++ D L+ K+  G+I L
Sbjct: 755 ENESLKNKAAKEALGDVMDKVVEIGGVKVLAVDIPDTDGNELRNLGDELKNKLGEGLIFL 814

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
               K+ K +++ + T+  +    +A +L +  A ++GGGG GGRP+MAQ+GG    K  
Sbjct: 815 ASA-KDGKVNLVAMATDGAVKAGVHAGNLIKTVAPIVGGGG-GGRPNMAQAGGKFSEKKA 872

Query: 887 QAIAGVASFLKK 898
            A+  VA  +KK
Sbjct: 873 DAVKAVADEVKK 884


>gi|295109896|emb|CBL23849.1| alanyl-tRNA synthetase [Ruminococcus obeum A2-162]
          Length = 879

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/912 (39%), Positives = 507/912 (55%), Gaps = 50/912 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    V+ +R  FL+F +  GH ++ S SL+P  D +L+  N+GM P K  FTG E P  
Sbjct: 1   MKKYGVNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEIPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             VTT QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+  
Sbjct: 61  TRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY +D+EAF +W K  G+ A++I R    DNFW     GPCGPCSEI++D
Sbjct: 117 GLDADRLYPSVYQDDDEAFNIWNKEVGIPAERIFRFGKEDNFWEHG-AGPCGPCSEIYYD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G PG     + +RY+E+WN VF QFE         L + +IDTGMGLER+A V
Sbjct: 176 RGEKYGCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D    L     +++G +Y     + V+ R+I DH+RS++F+I+DGI+P N
Sbjct: 236 VQDVDSIFDVDTICALRNLVCEISGKEYEKNYQDDVSIRLITDHIRSATFMISDGIMPTN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG     +  L   +     + YPEL + K  I + L +E
Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIKGTFLAKLSEEVINGSKAGYPELEEKKEFIFKVLTNE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           + +F KT+D+GL +L  +   +    ++ L+G+ AFKLYDT+G PLD+ ++IL  +G   
Sbjct: 356 ENQFNKTIDQGLRILGDMEEEMKTAGEKTLSGENAFKLYDTYGFPLDLTKEILEEKGYT- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR +AR           +   +   +    T+F GYD L         
Sbjct: 415 IDEDGFQKAMEEQRVKARTSREVTNYMGADATVYDEIDVNVTTEFEGYDNLIYD------ 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  + +IV   + GQK  V   +TPFYA  GGQ GD G
Sbjct: 469 -----------------SEITVLTTEKDIVTSLMEGQKGTVFVKETPFYATMGGQEGDCG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  +  + D  K   G F H   +E G+L T  ++ L ++ Q RR    NHSATHL
Sbjct: 512 VIETANGKFVVEDTIKLRGGKFGHVGYMESGMLSTGETVSLKVNEQARRDTEKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +TPD LRFD  H + +T  E+   E  VN  I   LPV T 
Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFQAMTPDEIVEAEALVNKEIQAALPVETN 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E+A  SGA AL G KY+ +VRVVS+     G  S  LCGGTHV +T  IML  IVS
Sbjct: 632 IMDIEEAKKSGAMALFGEKYDQKVRVVSM-----GDFSRELCGGTHVRNTSSIMLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG+RRIEA+TG     +   Q+  L   A  LK     V  ++  +  + + LQ 
Sbjct: 687 EAGVAAGVRRIEALTGNGVIEYYKKQEAMLHEAAKALKAQPAEVAEKIAHLQADVKALQS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +L    L         +  V  ++  +  +D   L+ + D L++KI  G+++L
Sbjct: 747 ENESLKSKLAQGSLGDVMNQIVDVKGVKLLASRVEGIDMNGLRDLGDQLKEKIGEGVVVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +    K ++L + T+       +A +L +  A ++GGGG GGRP+MAQ+GG N  KA 
Sbjct: 807 AAV-NGGKVNLLAMATDAAQKAGAHAGNLIKGVAAIVGGGG-GGRPNMAQAGGKNPEKAQ 864

Query: 887 QAIAGVASFLKK 898
           +AI   A  L++
Sbjct: 865 EAIDAAAGILEQ 876


>gi|317500249|ref|ZP_07958478.1| alanine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087517|ref|ZP_08336451.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316898345|gb|EFV20387.1| alanine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406269|gb|EGG85786.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 880

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/912 (38%), Positives = 517/912 (56%), Gaps = 50/912 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  
Sbjct: 1   MKAYGVNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFKE AIQ  W+ LT+  
Sbjct: 61  KRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIQWTWEFLTEVV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY++D EAF++W K  G+ A++I +    DNFW    +GPCGPCSE+++D
Sbjct: 117 GLDPNRLYPSVYEDDAEAFEIWNKKMGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V
Sbjct: 176 RGEKYGCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYSELEQKNIDTGMGLERLASV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D  K L     ++   +Y  E NN V+ RVI DH+RS +F+I+DGI+P+N
Sbjct: 236 VQDVDSIFDVDTIKALRDHVCRLAEKEYGEEYNNDVSIRVITDHVRSVTFMISDGIMPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG  +  +  L   +       YPEL + K  I   +  E
Sbjct: 296 EGRGYVLRRLLRRACRHGRLLGIHKGFLPELAETVIAGSKDGYPELEEKKEFILNVISKE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F KT+D+GL +L  ++S +   +++ILNG+ AF+LYDT+G PLD+ ++IL  +GL  
Sbjct: 356 EEQFNKTIDQGLGILAEMISDMEKKEEKILNGEDAFRLYDTYGFPLDLTKEILEEKGLC- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  ++E QR +AR           +   +   +    ++F+GY+ L         
Sbjct: 415 VDEDGFKASMEVQRKKARDAREVTNYMGADVTVYESIDPNVTSEFVGYEHLTW------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  +  + EI +    G+   V   +TPFYA +GGQ  DTG
Sbjct: 468 ----------------ESDVTVLTTETEIADALSEGEHGTVFVQETPFYATSGGQEADTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D  K   G   H  ++ +G++R+   +VL +D + R   + NHSATHL
Sbjct: 512 YIRTAEGEFKVEDTVKLLGGKVGHVGVMTKGMIRSGDKVVLEVDAKKRALSARNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +  D LRFD TH   +T  E+  +E  VN+ IA+   V  +
Sbjct: 572 LQKALRTVLGSHVEQAGSSVNEDRLRFDFTHFSAMTEDEITQVEKLVNESIAKAYDVDIK 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E+A  +GA AL G KY D VRVV++     G +S   CGGTHV++T EIM L IVS
Sbjct: 632 NMPIEEAKKTGAQALFGEKYGDIVRVVNM-----GDYSIEFCGGTHVNNTSEIMALKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG+RRIEA+T +    +    +EKLK+ A+ LK +  N+  ++  +  E + L  
Sbjct: 687 ETGVAAGVRRIEALTSEGLMKYYAQTEEKLKNAAALLKATPDNLSDKIHHMIAENKTLHS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K ++             ++  +  ++  I  VD   L+ + D L++K+  G+++L
Sbjct: 747 EVESLKSKIAQSAAGDVLDQVKEVKGIKLLAAQIEGVDMNGLRELGDQLKEKLGDGVVVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              S + K S++   T+  + +  +A +L +  A  +GGGG GGRP+MAQ+GG N +   
Sbjct: 807 ASGS-DGKVSLMATATDGAMKKGAHAGNLVKAIAGCVGGGG-GGRPNMAQAGGKNPSGIQ 864

Query: 887 QAIAGVASFLKK 898
            A+      L +
Sbjct: 865 DALKKAEEVLAE 876


>gi|167758103|ref|ZP_02430230.1| hypothetical protein CLOSCI_00441 [Clostridium scindens ATCC 35704]
 gi|167664000|gb|EDS08130.1| hypothetical protein CLOSCI_00441 [Clostridium scindens ATCC 35704]
          Length = 879

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/906 (38%), Positives = 508/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ +I+  W+ LT    LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKESIRWTWEFLTDVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EA+++W K  G+ A++I R    DNFW    +GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYLDDDEAWEIWNKDIGIPAERIFRFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+EIWN VF QF+         L + +IDTGMGLER+A ++QE  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNNNYTELEQKNIDTGMGLERLACIVQEVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L     ++   +Y  +    V+ RVI DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SMFDIDTMKALRDHVCRLAHAEYGRDEETDVSLRVITDHIRSVTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLL      ++ L   +       YPEL + K  I + +  E+E+F 
Sbjct: 301 VLRRLLRRACRHGRLLDIPGEFLVELAQNVIEGSKDGYPELEEKKEFIFKVIAKEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +++   K  ++ L+G  AFKLYDT+G PLD+ ++IL  +G++ +D   
Sbjct: 361 KTIDQGLSILSDMVAETEKKGEKTLDGQNAFKLYDTYGFPLDLTKEILEEKGMS-VDEKG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A+E QR  AR           +   +   +    T+F+GYD L              
Sbjct: 420 FKEAMEIQRKTAREAREVTNYMGADVTVYESIDPSITTEFVGYDNLSY------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V  +    E+V+    G++  +  ++TPFYA +GGQ  D G     
Sbjct: 468 -----------ESEVTVLATDTELVDALSDGERGTIFVEKTPFYATSGGQEADKGIIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + DV K   G F H   V +G+++      L +D  NR   + NHSATHLLH AL
Sbjct: 517 DGEFIVEDVVKLMGGKFGHIGHVSKGMIKVGDKAALEVDTDNRMLSANNHSATHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS +  D LRFD TH   +T  ELK +E  VN+ I   L V  + M  E
Sbjct: 577 RMVLGNHVEQAGSSVNADRLRFDFTHFSALTEEELKKVEAIVNEQIMNCLNVKVQNMPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GAAAL G KY   VRVVS+     G  S   CGGTHV++TG I    I+SE+ + 
Sbjct: 637 EAKKTGAAALFGEKYGSIVRVVSM-----GDFSIEFCGGTHVANTGVITAFKILSETGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    +EKL   A  LK +   +  ++  +  E + L       
Sbjct: 692 AGVRRIEALTSKGLLKYYDELEEKLHEAAKLLKAAPDKLTDKISHLQAENKALHSEVESL 751

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  +          ++  V  ++  + +VD   L+ + D L+KK+  GII++   + 
Sbjct: 752 KSKLAQDAMGDVMDQVVEVKGVKLLATKVEDVDMNGLRDLGDQLKKKLGEGIIVIASAT- 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K S++   T+  +D+  +A +L +  A ++GGGG GGRP+MAQ+GG N    D+AIA 
Sbjct: 811 DGKVSLMATATKGAIDKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPAGMDEAIAK 869

Query: 892 VASFLK 897
            A  L+
Sbjct: 870 AAEVLE 875


>gi|304321543|ref|YP_003855186.1| AlaS, alanyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
 gi|303300445|gb|ADM10044.1| AlaS, alanyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
          Length = 884

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/869 (47%), Positives = 565/869 (65%), Gaps = 32/869 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++V+ IR  FL FF++  HE++PS+ L+P NDPTL+F N+GMVPFKN+FTG +K  Y   
Sbjct: 3   TSVNDIRQAFLSFFEERDHEIVPSAPLVPQNDPTLLFINAGMVPFKNVFTGADKRPYDKA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT+ F L 
Sbjct: 63  VSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIINAWTLLTEVFGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L +T++  D+EA  LWKKI+GL  ++IIRI T DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 123 AEKLLVTIFHTDDEAASLWKKIAGLPEERIIRIATADNFWSMGDTGPCGPCSEIFYDHGP 182

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            IPGG PGS  E+G+R+IEIWNLVFMQF+QQ   ER  LPK SIDTGMGLER+ATVLQ  
Sbjct: 183 QIPGGPPGSPEEDGDRFIEIWNLVFMQFDQQPDGERLSLPKPSIDTGMGLERIATVLQGI 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            NNY+ DLF+ LI AS  VTG    G++++ HRVI DHLR++SFLI+DG+ P+NEGRGYV
Sbjct: 243 HNNYETDLFRALIDASVDVTGRPATGDDLIAHRVIADHLRAASFLISDGVTPSNEGRGYV 302

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAM YA  LG  +PL+  L+PAL  EMG AYP+LI+ + L+++TLR E+ERF  
Sbjct: 303 LRRIMRRAMRYAHGLGAKDPLLTQLVPALVAEMGGAYPDLIRGQSLVQDTLRVEEERFAD 362

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            LDRGL LL      L     L G+ AFKLYDT+G PLD+ +D L   G  G+D   F+ 
Sbjct: 363 LLDRGLKLLADETQSLTPGGTLAGETAFKLYDTYGFPLDLTEDALRRAGY-GLDQAGFDA 421

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+  Q++RARA   G G  + E +WF +K   GAT FIGY                    
Sbjct: 422 AMAAQKARARASWQGSGDASAETVWFDVKADSGATDFIGY-------------------- 461

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
              +      +V A+ Q GE V E+ +G+++  V +QTPFYAE+GGQ GD G A G+ +R
Sbjct: 462 ---VHEEAEGVVLAMAQNGERVAESGAGEEIAFVTNQTPFYAESGGQAGDAGTAEGEAVR 518

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           L ITD +K A  + VH A +++G L+    L L +D + R ++  NHSATHL+H AL   
Sbjct: 519 LVITDTKKGAGSLHVHQARIDKGTLKEGDVLRLKVDGKRRVRIKSNHSATHLVHAALRRH 578

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P+  RFD +H+  +T A++  +E  VN II QN      +M  EDAI
Sbjct: 579 LGDHVTQKGSFVGPESFRFDFSHNDGLTPAQIDEVEAEVNAIIRQNDAGQISLMPYEDAI 638

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           ++GA AL G KY D VRV+ +  +       +S  LCGGTHV+ TG+I L  IVSE ++ 
Sbjct: 639 SAGAMALFGEKYEDEVRVLRLGEDPADPARPYSMELCGGTHVARTGDIALFAIVSEGAVA 698

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG+ AR++   +     + A+ LKVS  ++  R+ ++ +E +KL+      
Sbjct: 699 SGVRRIEAVTGEAARAYYKERAASAAAAAAALKVSIADLPARLSQLMDERKKLEKDLVAA 758

Query: 778 KLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + +  +          + D+ F+  ++  V +KEL+ ++   +KK +  I   +  + E 
Sbjct: 759 RKKAALGGGDGPRTETVGDITFVGQVVEGVPAKELRGLIADAKKKYEKVIAAFIATA-ED 817

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           KAS+ + V++ L++++ A DL R+    L
Sbjct: 818 KASLSVGVSDALIEQWPAPDLVRIGVDAL 846


>gi|227498470|ref|ZP_03928616.1| alanyl-tRNA synthetase [Acidaminococcus sp. D21]
 gi|226903928|gb|EEH89846.1| alanyl-tRNA synthetase [Acidaminococcus sp. D21]
          Length = 874

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/913 (36%), Positives = 510/913 (55%), Gaps = 59/913 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+FF+ +GH +LPS+SLIP +DPTL+   +GM PFK  FTG+ KP  
Sbjct: 1   MKYLTGNEIRQKYLDFFKAHGHLVLPSASLIPHDDPTLLLIGAGMAPFKPFFTGKMKPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +TT QKCVR     +D++NVGRT RHHT+FEMLGNFSFG YFK+  I  AW+ LTKE 
Sbjct: 61  PRITTCQKCVRT----DDIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWAWEFLTKEL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L   +L+IT+Y +D+EA+ +W  + G+  ++I+R+   DNFW +  +GPCGP SEI  D
Sbjct: 117 ELPADKLWITIYPKDDEAYHIWHDVVGVPDERIVRL--EDNFWQIG-SGPCGPDSEIHID 173

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
            G     G P      +  R++E+WNLVF QF Q        L   +IDTG GLER+A+V
Sbjct: 174 LGADKGCGEPTCGPGCDCGRFLELWNLVFTQFNQNADGTYTPLKHKNIDTGAGLERLASV 233

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q K +N++ DL   +I+ + +++  KY  +    ++ +V+ DH RS +F+I DGILP+N
Sbjct: 234 IQGKPSNFETDLIFPIIELACELSHKKYNADAKTDISLKVVADHARSLTFMIGDGILPSN 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ + RLLG     +  L   + +  G  Y EL++ K  I++ +  E
Sbjct: 294 EGRGYVLRRVLRRAIRHGRLLGIRGKFLAALADKVISMYGEHYTELVEKKEFIDKVIDME 353

Query: 355 DERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL +G  LL+  ++        +L+GD AFKLYDT G P ++  +IL  +G+  
Sbjct: 354 ETSFLQTLSQGTDLLNEKIAAMKKENKTVLSGDDAFKLYDTFGFPWEVTDEILQEQGMT- 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F++A+  Q+ RAR                                 +  + +  D
Sbjct: 413 MDKEGFDKAMASQKERARKARND----------------------------KEGRPVMYD 444

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGE--IVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
            + L  +           +V A+ Q+GE   ++E  +G  + ++   T F+AE GGQLGD
Sbjct: 445 TRSLHLEGLTVDEASKEGVVAALYQEGETTPIKEGHTGDSLAIILTNTAFHAEGGGQLGD 504

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG  I D     + + +K  +G  +H   VE G      ++   ++   +  ++ NH+AT
Sbjct: 505 TGRLISDAGIFDVENTKKLPDGTTIHLGTVESGAFSVGQAVTFEVNLDRKADIARNHTAT 564

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS + PD LRFD +H  P+T+ E+  +ED VN+ I   + V 
Sbjct: 565 HLLHAALKKVLGGHVNQAGSYVGPDRLRFDFSHFSPLTAEEVSRVEDLVNEAILDAVDVQ 624

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               + + A   GA AL G KY   VRVV+V       HS  LCGG HVS+T  I L  I
Sbjct: 625 ISEEDIDKAKEMGAMALFGEKYGKIVRVVNVPG-----HSMELCGGVHVSNTSRIGLFKI 679

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           + ESS+ AG+RRIEA+TG  A  +    +  L+  +  +K     ++ R+E + +E +  
Sbjct: 680 LGESSVGAGLRRIEAVTGHGALLYTRELEALLEDASQKVKGRPNTLLSRIEALQDELKAE 739

Query: 771 Q--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825
           +      ++KL       +  K+ DV  +  +I EV   D   L+S+ D L+ K   GI+
Sbjct: 740 KHHAAELEQKLVAAAAQSAGDKVKDVKGIPVLIDEVKVDDVSALRSMGDQLRDKTG-GIV 798

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L      +K ++L + +++ + +  +A  + + +A+VL GG GGGRP MAQ+GG N  K
Sbjct: 799 VLFAAMAPQKVNILTMASKEAVAKGAHAGKIVKAAAQVL-GGNGGGRPDMAQAGGKNSGK 857

Query: 885 ADQAIAGVASFLK 897
             +A+A     ++
Sbjct: 858 IAEAMAETLKVIE 870


>gi|167037465|ref|YP_001665043.1| alanyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167040127|ref|YP_001663112.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300914211|ref|ZP_07131527.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307724554|ref|YP_003904305.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|320115879|ref|YP_004186038.1| alanyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|205830277|sp|B0K994|SYA_THEP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830278|sp|B0K0Q1|SYA_THEPX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|166854367|gb|ABY92776.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|166856299|gb|ABY94707.1| alanyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|300889146|gb|EFK84292.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307581615|gb|ADN55014.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|319928970|gb|ADV79655.1| alanyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 877

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/909 (39%), Positives = 531/909 (58%), Gaps = 55/909 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + VTT 
Sbjct: 7   NEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L   R
Sbjct: 67  QRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEVLGLPVNR 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++++Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGP SEI+FD+GE   
Sbjct: 123 LWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEKG 181

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P      + +R+IE WNLVF QF +  +     LP  +IDTGMGLER+AT++Q   +
Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIATIMQGVDS 241

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D+ + +     Q+  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGYV
Sbjct: 242 IFDVDVIRGITNFVSQIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I  K  I+  ++ E+ERF +
Sbjct: 302 LRRLLRRAARHGKLLGINDTFLYRVVDSVVENYGEAYPEIIDRKDYIKRIVKLEEERFKE 361

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+GL +L   ++ L      +L G  AFKLYDT+G PLD+ ++IL   G+  +D   +
Sbjct: 362 TIDQGLTILQDYINELKVQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEEGY 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + LE+QR RAR+      S   + I+ +L +    T+F+GYD                 
Sbjct: 421 TKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDTYES------------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     +S V AIV+  E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    + 
Sbjct: 466 ----------NSKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDNGILENEN 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + +++ D +K  +  F+H   +ERG++     +   ID  +RR  + NH+ATHLLH AL 
Sbjct: 516 VLIKVKDCKKVGDR-FIHIGTIERGLISVRDEVKAQIDVVSRRNAARNHTATHLLHKALK 574

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       ++
Sbjct: 575 EILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTYDE 634

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  GA AL   KY D+VRVV +       +S  LCGGTHV +T EI +  IVSES++ A
Sbjct: 635 AVKEGAVALFTEKYGDKVRVVKI-----DDYSMELCGGTHVKNTNEIGIFKIVSESAVGA 689

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG  A  +L  ++E LK  +  LK     +V ++E + +  +       + K
Sbjct: 690 GLRRIEALTGLAAIKYLEEKEEILKEASDLLKAQDKEIVSKIESLQQVLKTKDKEIEQLK 749

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           +++          S   +  +  +   + + DS+ LK++ D L+ K+++  I+L   + E
Sbjct: 750 IKMASILANSLINSAISLDGIKVVVSKVEDYDSEALKALGDILKDKLKTAAIVLASSTPE 809

Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG- 891
            KA  + + T+D++    N   + +   K +  G GGGRP MAQ  G N +K ++A+   
Sbjct: 810 -KAIFVGMATKDVVQKGINMGAVIKEVCK-VSEGNGGGRPDMAQGTGKNPSKVEEALNKA 867

Query: 892 ---VASFLK 897
              V   LK
Sbjct: 868 IDIVKEQLK 876


>gi|166030431|ref|ZP_02233260.1| hypothetical protein DORFOR_00092 [Dorea formicigenerans ATCC
           27755]
 gi|166029789|gb|EDR48546.1| hypothetical protein DORFOR_00092 [Dorea formicigenerans ATCC
           27755]
          Length = 893

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/906 (38%), Positives = 512/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  L S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 21  VNELRRMFLEFFESKDHLALKSFSLVPHNDKSLLLINSGMAPMKPYFTGQEIPPRRRVTT 80

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD  
Sbjct: 81  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWTWEFLTEVVGLDPE 136

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY+ D+EA+++W K  G+ A++I R    DNFW    +GPCGPCSE+++D+GE  
Sbjct: 137 RLYPSVYENDDEAWEIWNKEIGVPAERIFRFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 195

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG     E +RY+EIWN VF QF          L + +IDTGMGLER+A V+Q+  
Sbjct: 196 GCGKPGCTVGCECDRYMEIWNDVFSQFNNDGHGNYSDLAQKNIDTGMGLERLACVVQDVD 255

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L      ++G  Y  +    V+ RV+ DH+RS +F+I+DGI+P+N GRGY
Sbjct: 256 SMFDIDTMKALRDHVCAMSGKHYGIDHETDVSLRVVTDHIRSVTFMISDGIMPSNSGRGY 315

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     ++ L   +       YPEL + K  I   +  E+ +F 
Sbjct: 316 VLRRLLRRACRHGRLLGIEGAFLVELAQTVIDGSKDGYPELEEKKDFIFNVIAKEEAQFN 375

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + K+   +L+G+ AFKLYDT+G P+D+  +IL  +GL   D   
Sbjct: 376 KTIDQGLSILADMEEEMKKNGETVLSGENAFKLYDTYGFPIDLTSEILEEKGLT-YDKEG 434

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A +EQR+++            +   +   +   AT+F+GY+ L              
Sbjct: 435 FEKAQKEQRAKSEGTFGTHSYTGKDATVYDELDAKLATEFVGYENL-------------- 480

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V A+  + EIV+    G+K  ++ D+T FY   GGQ GD G     
Sbjct: 481 ---------VCDAKVTALTSEEEIVDALSDGEKGTIIVDKTTFYGTMGGQEGDIGTIKTA 531

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + +    A     H   V  G+++   ++ + +D +NR   + NHSATHLL  AL
Sbjct: 532 DGEFVVENTIHLAGTKIGHVGYVSHGMIKVGDTVSMEVDKENRNLSARNHSATHLLQAAL 591

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS +  + LRFD TH   ++  ELK +E+ VN+ IA+ LPVV + M  E
Sbjct: 592 RQVLGTHVEQAGSYVDAERLRFDFTHFSALSKEELKQVENIVNEKIAECLPVVAKNMPIE 651

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GAAAL G KY D VRVVS+     G  S   CGGTHVS+TG I  L I+SE+ + 
Sbjct: 652 EARKTGAAALFGEKYGDVVRVVSM-----GDFSVEFCGGTHVSNTGVISALKIISETGVA 706

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    ++KL+  A+ +K +   +  ++  +  E + L       
Sbjct: 707 AGVRRIEALTSKGLLKYYDDMEKKLQEAAALVKATPNQLSDKIRHLQAENKDLHSELESV 766

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++  E          ++  V  ++  + +VD   L+ + D L++K+  G+I+L   + 
Sbjct: 767 KSKMAKEAMGDVSDQVTEVKGVKLIAAKVDDVDMNGLRDLGDQLKEKLGEGVIVLASAA- 825

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++ + T++ + +  +A +L +  A ++GGGG GGRP+MAQ+GG N +  D AIA 
Sbjct: 826 GGKVSLVAMATDEAVKKGAHAGNLIKGIAGLVGGGG-GGRPNMAQAGGKNPDGIDAAIAK 884

Query: 892 VASFLK 897
           V+  L+
Sbjct: 885 VSEVLE 890


>gi|302391203|ref|YP_003827023.1| alanyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
 gi|302203280|gb|ADL11958.1| alanyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
          Length = 875

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/907 (39%), Positives = 540/907 (59%), Gaps = 49/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL++F+  GH +LPS+ L+P NDP+L++ N+GM PFK  F GQ  P    +
Sbjct: 3   MTSKEIRQKFLDYFESKGHLILPSAPLVPQNDPSLLWINAGMTPFKPYFNGQATPPKTRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R     ND+ NVG+T+RHHTFFEMLGNFSFG YFKE AI+ ++D L  E +L 
Sbjct: 63  VTSQKCIRT----NDIGNVGKTDRHHTFFEMLGNFSFGDYFKEEAIKWSYDFLVNEIELK 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           Q RL+I++Y +DEEAF++WK   G+  ++I+R+  ++NFW +  TGPCGPCSEI +D G 
Sbjct: 119 QDRLWISIYKDDEEAFEIWKNKIGIPTERIVRMGKDENFWQIG-TGPCGPCSEIHYDLGA 177

Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                       + +RY E+WNLVF Q++     E   LP  +IDTGMGLER+A+++Q+ 
Sbjct: 178 EFGCSDNCDFGCDCDRYREVWNLVFTQYDYTEDGEYKTLPSKNIDTGMGLERLASIIQQV 237

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +N++ DLF  +I+   + T   YE ++     +RVI DH+RS +  I DG+LP+NEGRG
Sbjct: 238 DSNFETDLFIPIIEFISEHTEYDYESSDEIKSAYRVIADHIRSVTLAIGDGVLPSNEGRG 297

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y++RR++RRA+ YA+ L    P +  ++P +   MG+ Y E+   +  I++T++SE+ +F
Sbjct: 298 YIIRRVLRRAVRYAKKLDLKLPFLHRIVPVVVDIMGNEYTEIADKEEQIKKTIKSEEVKF 357

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TLD+G+V+L+ ++  L     E++ GD  F LYDT+G P ++ ++I   RG   ID  
Sbjct: 358 QETLDQGMVILEELIDELEGEGREVIPGDEVFTLYDTYGFPKELTEEIAQERGYR-IDSE 416

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            F +A+EEQR+RARA        + E +++  L+++    +F+GY               
Sbjct: 417 GFEEAMEEQRARARAAQKDHDWSSAEIELFKELRDEIEMPEFVGYTQPE----------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V  I++  E+V+   +G++ +VV  +TPFYAE+GGQ+GD G  +
Sbjct: 466 ------------CETEVVKIIKDNELVDSLSAGEEGQVVLTKTPFYAESGGQIGDKGALL 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D I + + D Q+KAE +  H  ++E G L     L   I    R  +  NH+ATHLLH 
Sbjct: 514 SDDITVTVVDTQEKAE-LISHQVVIEAGKLSVGDKLTAKIQTDQRIYIRRNHTATHLLHQ 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV Q+GS +TP+ LRFD TH + ++  ELK IE+ VN +I +NL V      
Sbjct: 573 ALRDILGEHVDQSGSLVTPERLRFDFTHFEAVSEEELKEIEERVNQVIRKNLEVEVLKTT 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GAAAL   +Y+D VRV+ +     G +S  LCGGTHV + GEI L  I SE  
Sbjct: 633 LEEAKKMGAAALFSEQYDDEVRVIKI-----GDYSLELCGGTHVDAAGEINLFKITSEGG 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG+ A +++  Q++ LK  A+ LK +   VV ++E++  + + L+    
Sbjct: 688 IAAGVRRIEAVTGKEALNYINQQEDILKEAAAALKANPEEVVEKIEKLQSKIKDLEAEVT 747

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K K +L             +I  +N +   +  +D++ L+++ D +++++ SGII+L   
Sbjct: 748 KFKNKLADSQADEVASDIEEINGINVVLEEVEGLDAEGLRTMGDNIKEELDSGIIILASK 807

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   + +VT+DL+D  +NA  +    A+V GGGG GGRP MAQ+GG   +K D A 
Sbjct: 808 LGE-KVLFVSLVTDDLVDEGYNAGQIIGEVARVAGGGG-GGRPDMAQAGGSQPDKLDAAF 865

Query: 890 AGVASFL 896
                 +
Sbjct: 866 KKARELI 872


>gi|52081222|ref|YP_080013.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786603|ref|YP_092432.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319644810|ref|ZP_07999043.1| alanyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
 gi|59798507|sp|Q65GS5|SYA_BACLD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52004433|gb|AAU24375.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349105|gb|AAU41739.1| AlaS [Bacillus licheniformis ATCC 14580]
 gi|317392619|gb|EFV73413.1| alanyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
          Length = 878

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/915 (38%), Positives = 525/915 (57%), Gaps = 58/915 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SLIP  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKTLTSAQVRQMFLDFFKEKGHAVEPSASLIPHEDPSLLWINSGVATLKKYFDGRVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTDQK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL +TV+ ED+EA++LW K  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPERLSVTVHPEDDEAYELWSKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGEDYGNDPSDPELYPGGENERYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q+   NYD DLF  +I+A+E ++G KY          +V+ DH+R+++F + DG 
Sbjct: 234 MVSVIQDAKTNYDTDLFMPIIKATEAISGEKYGTSAEKDTAFKVVADHIRTAAFAVGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYV+RR++RRA+ YA+ +    P M  L+P +   M + Y E+ +    I + 
Sbjct: 294 LPSNEGRGYVIRRLLRRAVRYAKSININRPFMYELVPVVADIMAAFYGEVKEKADFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL  GL +L  V+       + I++G+  FKLYDT+G P+++ ++     
Sbjct: 354 IKTEEERFHETLHEGLAILSEVIQKEKAKGNRIISGEDVFKLYDTYGFPVELTEEYAEDE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F + +++QR RAR     +GS   +    +L++    ++FIGY  ++    
Sbjct: 414 GME-VDHEGFEREMDKQRERARQARQDVGSMQVQG--GALRDIMTESEFIGYSDIK---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  ++Q GE+V+    GQKV+ + ++TPFYAE+GGQ+
Sbjct: 467 -------------------TETKIAELLQDGELVDLVQEGQKVQFILEKTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G        +++TDV+K   G  +H  IVE G ++  MS+   +  + R+ +  NH+
Sbjct: 508 GDKGWVKSGDAAIRVTDVKKAPNGQHLHEGIVESGAIKKGMSVTAEVTERLRKDIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS +T   LRFD +H   +T  EL+ IE  VN+ I  ++P
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTDSRLRFDFSHFGQVTKEELEQIETKVNEKIWASIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A A GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VQIDLKPIAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVRNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TGQ A   +  + E L+  A  LK +   V  R+E +  + +
Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYEEMNAKLELLEQAAEVLKTNVKEVPKRIEALQSDLK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             Q  +     +L  ++         +I  +  ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 DAQRENESLLAKLGNKEAGEILEKVKEIDGIKLLAEKVNAKDMNHLRTMVDDLKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  E K ++   VT+DL++R F+A  L +  A+  GGGG GGRP MAQ+GG   
Sbjct: 803 VIVLGAVQNE-KVNISAGVTKDLIERGFHAGKLVKQVAEACGGGG-GGRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            +  +A+A    ++K
Sbjct: 861 ERLAEALASAEEWVK 875


>gi|291550263|emb|CBL26525.1| alanyl-tRNA synthetase [Ruminococcus torques L2-14]
          Length = 879

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/896 (38%), Positives = 500/896 (55%), Gaps = 48/896 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY++D+EAF++W K  G+ A++I R    DNFW    +GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYEDDDEAFEIWNKKMGIPAERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG     E +RY+EIWN VF QF          L + +IDTGMGLER+A ++Q+  
Sbjct: 181 GCGKPGCTVGCECDRYMEIWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLACIVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L      ++G +Y  +    V+ RV+ DH+RS +F+++DGILP+N GRGY
Sbjct: 241 SMFDIDTMKALRDHVCNLSGKQYGIDHETDVSLRVVTDHIRSVTFMVSDGILPSNSGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG     ++ L   +       YPEL + K  I   +  E+  F 
Sbjct: 301 VLRRLLRRACRHGKLLGIDGAFLVELATTVIEGSKDGYPELEEKKEFIFNVIAKEEANFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + + K+  ++L+G+ AFKLYDT+G P+D+  +IL  +GL   D   
Sbjct: 361 KTIDQGLAILADMEAEMEKNGEKVLSGENAFKLYDTYGFPVDLTSEILEEKGLT-YDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A EEQR+++            E   +   +    T+F+GYD L              
Sbjct: 420 FKKAQEEQRAKSEGTFGTHSYTGKEVSVYDQLDAALETEFVGYDNL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V A+  + E+V+    G+K  ++ +QTPFYA  GGQ  D G     
Sbjct: 466 ---------TFDSKVTALTTETEVVDALSDGEKGTIIVEQTPFYATMGGQEADKGVIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + D    A     H   V +G+++   ++ L +D +NR     NHSATHLL  AL
Sbjct: 517 DGEFVVEDCIHLAGTKVGHVGHVVKGMIKIGDAVTLEVDAKNRALTERNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +  D LRFD TH   +T  ELK +E+ VN+ IA  L VVT+ +  E
Sbjct: 577 RTVLGSHVEQAGSFVNADRLRFDFTHFSAVTPEELKKVEEIVNEQIANALAVVTKNLPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV +        S   CGGTHV +T EI  L I+SES + 
Sbjct: 637 EARKTGAQALFGEKYGDVVRVVDMSG-----FSVEFCGGTHVKNTSEITALKIISESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +   ++    +  LK  A  +K +  N+  ++  +  E + L+      
Sbjct: 692 AGVRRIEALTSEGLMNYYAEMERLLKEAAQLVKATPENLAEKITHLQAENKSLKGEVESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++             ++  V  ++  +  VD   L+ + D L++K+  G+++L     
Sbjct: 752 KSKMAQSAAGDILDQVKEVKGVKLLAAQLDGVDMNGLRDLGDQLKEKLGEGVVVLASG-N 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + K S++   T+  +    +A +L +  A ++GGGG GGRP+MAQ+GG N      
Sbjct: 811 DGKVSLMATATDGAMKQGAHAGNLVKAIAGLVGGGG-GGRPNMAQAGGKNPAGIPD 865


>gi|153814718|ref|ZP_01967386.1| hypothetical protein RUMTOR_00933 [Ruminococcus torques ATCC 27756]
 gi|145847749|gb|EDK24667.1| hypothetical protein RUMTOR_00933 [Ruminococcus torques ATCC 27756]
          Length = 880

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/912 (38%), Positives = 517/912 (56%), Gaps = 50/912 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  
Sbjct: 1   MKAYGVNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFKE AIQ  W+ LT+  
Sbjct: 61  KRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIQWTWEFLTEVV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY++D EAF++W K  G+ A++I +    DNFW    +GPCGPCSE+++D
Sbjct: 117 GLDPNRLYPSVYEDDAEAFEIWNKKMGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V
Sbjct: 176 RGEKYGCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYSELEQKNIDTGMGLERLASV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D  K L     ++   +Y  E NN V+ RVI DH+RS +F+I+DGI+P+N
Sbjct: 236 VQDVDSIFDVDTIKALRDHVCRLAEKEYGEEYNNDVSIRVITDHVRSVTFMISDGIMPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG  +  +  L   +       YPEL + K  I   +  E
Sbjct: 296 EGRGYVLRRLLRRACRHGRLLGIHKGFLPELAETVIAGSKDGYPELEEKKEFILNVISKE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F KT+D+GL +L  ++S +   +++ILNG+ AF+LYDT+G PLD+ ++IL  +GL  
Sbjct: 356 EEQFNKTIDQGLGILAEMISDMEKKEEKILNGEDAFRLYDTYGFPLDLTKEILEEKGLC- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  ++E QR +AR           +   +   +    ++F+GY+ L         
Sbjct: 415 VDEDGFKASMEVQRKKARDAREVTNYMGADVTVYESIDPNVTSEFVGYEHLTW------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  +  + EI +    G+   V   +TPFYA +GGQ  DTG
Sbjct: 468 ----------------ESDVTVLTTETEIADALSEGEHGTVFVQETPFYATSGGQEADTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D  K   G   H  ++ +G++R+   +VL +D + R   + NHSATHL
Sbjct: 512 YIRTAEGEFKVEDTVKLLGGKVGHVGVMTKGMIRSGDKVVLEVDAKKRALSARNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +  D LRFD TH   +T  E+  +E  VN+ IA+   V  +
Sbjct: 572 LQKALRTVLGSHVEQAGSSVNEDRLRFDFTHFSAMTEDEITQVEKLVNESIAKAYDVDIK 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E+A  +GA AL G KY D VRVV++     G +S   CGGTHV++T EIM L IVS
Sbjct: 632 NMPIEEAKKTGAQALFGEKYGDIVRVVNM-----GDYSIEFCGGTHVNNTSEIMALKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG+RRIEA+T +    +    +EKLK+ A+ LK +  N+  ++  +  E + L  
Sbjct: 687 ETGVAAGVRRIEALTSEGLMKYYAQTEEKLKNAAALLKATPDNLSDKIHHMIAENKTLHS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K ++             ++  +  ++  I  VD   L+ + D L++K+  G+++L
Sbjct: 747 EVESLKSKIAQSAAGDVLDQVKEVKGIKLLAAQIEGVDMNGLRELGDQLKEKLGDGVVVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              S + K S++   T+  + +  +A +L +  A  +GGGG GGRP+MAQ+GG N +   
Sbjct: 807 ASGS-DSKVSLMATATDGAMKKGAHAGNLVKAIAGCVGGGG-GGRPNMAQAGGKNPSGIQ 864

Query: 887 QAIAGVASFLKK 898
            A+      L +
Sbjct: 865 DALKKAEEVLAE 876


>gi|239948196|ref|ZP_04699949.1| alanyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922472|gb|EER22496.1| alanyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 878

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/901 (45%), Positives = 563/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K  R  LP+ SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG     +RVI DHLR+SSFLIADG++P+NEGR YVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVEGEAKFFYRVIADHLRASSFLIADGVIPSNEGRSYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+++DIL  R    +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLIEDILKNRD-ISVDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAECKIIALIKDNNLVNDIKEIDTQFLLISNQTPFYGESGGQMGDIGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDA+
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEINLIEDKVNEIIRDNHEVNTTLMATEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRCTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  +D  LKS+ S LK ++  ++ +V  I E  RKL+    K    
Sbjct: 696 RRIEAVCGEFVIKLMREKDNLLKSVESSLKTNKNELITKVNNILERNRKLEKELEKTHLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQAEQITGIKLLHKKVGNIDNKILRQAAENLTKKLEDLIVVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNAGIIAKELSLFLGGSGGGGQASLAQAGGNDIGKLTNIHKKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|86606529|ref|YP_475292.1| alanyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|123738092|sp|Q2JTG8|SYA_SYNJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|86555071|gb|ABD00029.1| alanyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 883

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/907 (38%), Positives = 520/907 (57%), Gaps = 50/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + ++IR  FL+F+ + GH++LPS+SL+P  DPT++ T +GM+PFK IF G + P Y  VT
Sbjct: 6   SGAAIRQAFLDFYAQRGHQVLPSASLVPE-DPTVLLTIAGMLPFKPIFLGHQDPQYPRVT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F L  
Sbjct: 65  TAQKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWELVTEVFGLPP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ EDEEAF LW+   G+   +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 121 ERLVVSVFREDEEAFALWRDAIGIPPHRIRRMGEEDNFWAAGPTGPCGPCSEIYYDFKPE 180

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G       +  R++EI+NLVFM+  + ++     L + +IDTG+GLER+A VLQ   N
Sbjct: 181 L-GDEQIDLGDDSRFLEIYNLVFMELNRDSEGRLTPLARQNIDTGLGLERLAQVLQGVPN 239

Query: 243 NYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   ++Q + ++  + Y        V+ +VI DH R+   LIADG++P+N  RGY
Sbjct: 240 NYETDLIFPIVQKAAEIARVDYFQASPEQKVSLKVIGDHARAVMHLIADGVIPSNVDRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RLLG  EP  + ++        +AYPE+ + + +I+  L+ E+E+F 
Sbjct: 300 VLRRLIRRMVRHGRLLGIGEPFTLPVVETAIQLAEAAYPEVREREAVIKAELQREEEQFL 359

Query: 360 KTLDRGLVLLDGVLSHLG---KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           KTL+RG  LL  + +++      + ++G  AFKL+DT+G PL++ Q+I   RG + +D+ 
Sbjct: 360 KTLERGERLLFDLFANVTASGAPKQISGADAFKLFDTYGFPLELTQEIAQERGFS-VDVQ 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F Q +E+QR RARA    L     +     L E    T+F+GY                
Sbjct: 419 GFEQEMEKQRQRARAAHQTLDVTA-QGSLDELAEFLIETEFLGYSQ-------------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    +    +V+A++ +G+ V +  +GQ V+VV D+TPFYAE+GGQ+GD G   G
Sbjct: 464 ---------SSARGVVEALLVEGKSVPQVEAGQSVQVVLDRTPFYAESGGQIGDRGYLAG 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG+ +++ DVQK+ + +FVH   VERGILR    +   ID   RR+   +H+ATHLL  A
Sbjct: 515 DGVLVRVEDVQKRGD-LFVHFGWVERGILRVGDPVQAQIDLACRRRAQAHHTATHLLQAA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ++   +SQ GS +  D LRFD T S+P+T  EL+ +ED VN  IA+  P    IM  
Sbjct: 574 LKKVVDPSISQAGSLVAFDRLRFDFTLSRPLTPEELQQVEDLVNTWIAEAHPAQVSIMPL 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            +A A GA A+ G KY   VRVV          S  LCGGTHVS+T EI L  I+SES +
Sbjct: 634 AEAKARGAIAMFGEKYGAEVRVVDFPG-----VSMELCGGTHVSNTAEIGLFKIISESGV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AGIRRIEA+ G     +L  +D  ++ L++  K     +  RV  +  E +  Q    +
Sbjct: 689 AAGIRRIEAVAGPAVLEYLNERDSVVRELSAQFKAKPQEIPERVAALQAELKAAQRALEE 748

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + QL +            + ++  ++  +     + LK+  + L  K+  G ++L  + 
Sbjct: 749 ARSQLALLQAERLLPQAVAVGNLQILAAELGSTPPEALKTAAEHLLHKLGEGAVVLGSVP 808

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +  K S++   +  +      A       AK+ GGGG GGRP++AQ+GG    K  QA+ 
Sbjct: 809 EAGKVSLVAAFSPAVQKLGLKAGSFIGEIAKLTGGGG-GGRPNLAQAGGKQPEKLAQALQ 867

Query: 891 GVASFLK 897
                L+
Sbjct: 868 VAQERLQ 874


>gi|237739614|ref|ZP_04570095.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229423222|gb|EEO38269.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 867

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++  Y  
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L++TV+  D+EA ++W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K NN++ DL   +++ + ++TG +Y        + +VI DH R+ +FL+ DG++P+NE
Sbjct: 236 QGKPNNFETDLLFPILEEAARITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +      AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+V+FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEVSFKLYDTYGFPYELTEEIAEERGVTVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +K+G T+F GY+       +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYEKTEDEATLLSSR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGR 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DV +K + IF+H   +E+G      +  L ++   R   + NH+ATHLL
Sbjct: 504 IYSDNFSAKVLDV-QKQKDIFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + PD LRFD +H + +T+ +L  IE+ VN+ I + + VV   
Sbjct: 563 HKALREVVGTHVQQAGSLVDPDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIDVVVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY + VRVV V        S+ LCGGTH+ +  +I L  IVSE
Sbjct: 623 HSIEEAKNLGAMMLFGDKYGEVVRVVDVSG-----FSTELCGGTHIDNIAKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      + + LK +   LK S  NVV +VE+  E  +  +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLAEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKDAEKA 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K ++ + +         +I     +     +  + +L++++D ++   +  I++L 
Sbjct: 738 LESLKQKIALFETKAALSGMEEINGAKVLIATFKDKTADDLRTMIDTIKDNNEKAIVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K S  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG + +K   A
Sbjct: 798 STQ--DKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESKLLDA 854

Query: 889 IAGVASFLK 897
              + + ++
Sbjct: 855 FKEIRAIIE 863


>gi|163781728|ref|ZP_02176728.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882948|gb|EDP76452.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 873

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/903 (39%), Positives = 524/903 (58%), Gaps = 48/903 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF++ GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y    
Sbjct: 4   SAHEIRELFLSFFERKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGVEKRPYTRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFKE AI+ AW+ +T    L +
Sbjct: 64  SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKESAIEYAWEFVTGTLKLPE 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +DEEA+++W +  G+ +++I ++   DNFW M ETGPCGP SEI+ D+GE 
Sbjct: 124 EKLYVSVYRDDEEAYRIWSEKVGVPSERIWKLGDEDNFWQMGETGPCGPSSEIYVDRGEE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G         ERY+EIWNLVFMQ+ +  K     LPK +IDTGMGLER+A+VLQ    
Sbjct: 184 YEG--------DERYLEIWNLVFMQYNRDEKGNLTPLPKPNIDTGMGLERVASVLQNTKT 235

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NY+ID+   LI+  E V+G +Y    +  V  RVI DHLR+  F I+DG+LP+NEGRGYV
Sbjct: 236 NYEIDIIYPLIEFGEGVSGHRYGESPDTDVALRVIADHLRALIFAISDGVLPSNEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRA+ +   LG  EP +   +  +   M   YPEL  ++  ++  +R E+ERF +
Sbjct: 296 IRRILRRALRFGYKLGVEEPFLNRGIDLVVDIMKDPYPELDMSREFVKGVVRGEEERFIR 355

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G+  ++ ++    +   + L G+  FK YDT+G PLD++ +I   RGL  IDI  F
Sbjct: 356 TLKAGMQAVEELIERAKEEGRDTLKGEEVFKAYDTYGFPLDLIDEIARERGLK-IDIAGF 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + +E+QR RAR     + +   + ++  LK+    ++F+GY+                 
Sbjct: 415 QEEMEKQRERARK-HFKVETKKVKPVYQHLKDIGKTSEFVGYEHYEY------------- 460

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + +  +V+  E+V E   G++ E++  +TPFY E GGQ+GDTG    D 
Sbjct: 461 ----------ETELMGVVKGEELVSELSEGEEAELILRETPFYPERGGQVGDTGVIESDR 510

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D Q   +G+ VH   + +G LR    +V  +D + R  +  NH+ATHLLH AL 
Sbjct: 511 ALFKVEDTQSPVDGVIVHRGKLLKGTLRVGDRVVARVDRERREDIMRNHTATHLLHAALK 570

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +    LRFD TH + +T  ELKSIE+ VN+ I +N+PV    M+ + 
Sbjct: 571 NLLGEHVRQAGSLVADRYLRFDFTHFEALTREELKSIEELVNEKIRENMPVQVNEMDYQS 630

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ SGA A+   KY D VRV+S      G  S  LCGGTHVS TG+I    I+SESS+ A
Sbjct: 631 ALRSGAVAIFEEKYGDTVRVIS-----AGEFSRELCGGTHVSRTGDIGYFKILSESSVGA 685

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RR+ A TG+ A      +   L+ +A  L   +  V+ R+E +  E ++ +   ++ +
Sbjct: 686 GVRRLIAQTGRWAVETAFREHTLLEDVAQSLNAKEEEVLSRLESLKSELKEKEREISRLR 745

Query: 779 LQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            +L    +       ++ +          V ++EL+++ D L+ K    ++ L+   K+ 
Sbjct: 746 QELLKFQIETSVKREEVGEFTLFWGKFKGVGAEELRNLADMLRHKTGKDVVFLLS-EKDG 804

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S ++ V+++  DR  A  L +   + L GGG GGR  +AQ GG N    ++A+  + +
Sbjct: 805 KLSTVVAVSKETTDRVKANQLIKELGRALKGGG-GGREDLAQGGGSNPGGFEEAVKILRN 863

Query: 895 FLK 897
            LK
Sbjct: 864 RLK 866


>gi|300868714|ref|ZP_07113325.1| Alanyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300333275|emb|CBN58517.1| Alanyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 879

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/905 (38%), Positives = 505/905 (55%), Gaps = 50/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL+F+ + GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ  P     T
Sbjct: 9   SGSEIRQKFLDFYAQRGHKILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRSPQSPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI  AW+L T+ F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKQAIAWAWELCTEVFGLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L I+V+ ED+EAF LW K  G+   +I R+   DNFW    TGPCGPCSEI++D    
Sbjct: 124 ENLVISVFREDDEAFDLWAKEIGIPPQRIQRMGEEDNFWVSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              G     E+  R+IEI+NLVFMQ+ +        L   +IDTGMGLERMA VLQ+  N
Sbjct: 184 K--GDDIDLEDDTRFIEIYNLVFMQYNRDAAGNLTPLQNQNIDTGMGLERMAQVLQKVPN 241

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +++ + ++  + Y   +     + +VI DH+R+   +IAD I  +N GRGY
Sbjct: 242 NYETDLIFPIVKTAAEIARIDYSQADENTKISLKVIGDHIRAVVNMIADEIRASNIGRGY 301

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA+ + RL+G     +  +          AYP + Q    I+  L  E+  F 
Sbjct: 302 VLRRLIRRAVRHGRLIGIEGGFITKVAETAIALCEDAYPNVRQRSAAIQAELEREEANFL 361

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TL+RG  LL  ++  L +     ++G  AF LYDT+G PL++ Q+I   +GL  +D+  
Sbjct: 362 RTLERGEKLLAEIIDRLQQQGKNQIDGQDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEG 420

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F QA+EEQR+R +     +   T +     L E   AT+F+GY  L  +           
Sbjct: 421 FEQAMEEQRNRGKDAHETIDL-TVQGSLDKLAENIHATEFVGYKQLSSNV---------- 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         VK I+  G+ VEEA    +++V+ +QTPFYAE+GGQ+GD G   GD
Sbjct: 470 -------------QVKVILVNGKSVEEASEESEIQVILNQTPFYAESGGQIGDRGDLSGD 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            I ++I DV KK    FVH   +ERG LR   S+   +D   RR++  NHSATHLL  AL
Sbjct: 517 SILVKIEDV-KKESDFFVHFGRIERGTLRVGDSMTAQVDNSRRRRVQANHSATHLLQAAL 575

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+ + +SQ GS +  D LRFD    + IT+ EL+ IED +N  IA+        M   
Sbjct: 576 KQIVDNSISQAGSLVDFDRLRFDFNCPRSITAEELQKIEDLINSWIAEAHLAEIAQMPIA 635

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA A+ G KY D VRV+          S  LCGGTHVS+T EI L  IVSE+ I 
Sbjct: 636 EAKKKGAVAMFGEKYGDVVRVIDFPG-----VSMELCGGTHVSNTAEIGLFKIVSETGIS 690

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +GIRRIEA++GQ    +L  +D+ ++ L    K     +  R+  +  E +  Q      
Sbjct: 691 SGIRRIEAVSGQAVLDYLNVRDKVVRDLGDRFKAKPEELPNRITNLQNELKANQKELEAL 750

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L +        S   + +   +   + +VD++ LK+  + LQ+K+ +  ++L  + +
Sbjct: 751 KSELAIAKSDQLLSSAESVGEFKIIIAELGDVDTEALKTAAERLQQKLGNAAVVLASVPE 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   + D+  +   A       AK+ GGGG GGRP++AQ+GG + +K  +A+  
Sbjct: 811 ADKVSLVAAFSADVNKKGLQAGKFIGQIAKICGGGG-GGRPNLAQAGGRDASKLKEALES 869

Query: 892 VASFL 896
             + L
Sbjct: 870 ARNLL 874


>gi|86608988|ref|YP_477750.1| alanyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123751690|sp|Q2JLC4|SYA_SYNJB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|86557530|gb|ABD02487.1| alanyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 884

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/911 (38%), Positives = 518/911 (56%), Gaps = 54/911 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + ++IR TFL+F+ + GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ  P Y  VT
Sbjct: 6   SGAAIRQTFLDFYAQRGHQVLPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRDPEYPRVT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F L  
Sbjct: 65  TAQKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAWAWELVTEVFGLPP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ EDEEAF LW+   G+ A +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 121 ERLVVSVFREDEEAFALWRDEIGIPAHRIQRMGEADNFWAAGPTGPCGPCSEIYYDFKPE 180

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R++EI+NLVFM+  + ++     L K +IDTG+GLER+A VLQ   N
Sbjct: 181 L-GDERIDLEDDSRFLEIYNLVFMELNRDSEGHLMPLAKQNIDTGLGLERLAQVLQGVPN 239

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ +  + G+ Y   N    ++ +VI DH R+   LIADG+LP+N  RGY
Sbjct: 240 NYETDLIFPIIQTAAGIAGLNYSKANPEQQISLKVIGDHARAVMHLIADGVLPSNVDRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RLLG  EP  + ++        +AYP++ + + LI+  L+ E+E+F 
Sbjct: 300 VLRRLIRRMVRHGRLLGIGEPFTIPVIETAIQLAEAAYPQVRERETLIKTELQREEEQFL 359

Query: 360 KTLDRGLVLL-------DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           KTL+RG  LL       +         + ++G  AFKL+DT+G PL++ Q+I    G + 
Sbjct: 360 KTLERGERLLLDLFTAVESSRRDSSSPKQISGADAFKLFDTYGFPLELTQEIAQEHGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F Q +E+QR RARA    +     +     L +    T+F+GY            
Sbjct: 419 VDLEGFEQEMEKQRQRARAAHQTIDLTA-QGSLDELADFLSQTEFLGYSQ---------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        +    +V+A++ +G+ V +  +GQ V+VV D+TPFYAEAGGQ+GD G
Sbjct: 468 -------------SSARGVVEALLVEGKSVPQVEAGQAVQVVLDRTPFYAEAGGQIGDRG 514

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              GDG+ ++I DVQK+ + +FVH   VERGILR    +   ID   RR+   +H+ATHL
Sbjct: 515 YLSGDGLLVRIEDVQKQGD-LFVHFGRVERGILRVGDPVQAQIDLACRRRAQAHHTATHL 573

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  I+   + Q GS +  D LRFD T S+P+T  EL+ IE+ VN  IA+       
Sbjct: 574 LQAALKRIVDPSIGQAGSLVAFDRLRFDFTLSRPVTPEELEQIENLVNTWIAEAHAAQVA 633

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM   +A A GA A+ G KY   VRV+          S  LCGGTHV++T EI L  I++
Sbjct: 634 IMPLAEAKARGAVAMFGEKYGAEVRVIDFPG-----VSMELCGGTHVNNTAEIGLFKIIA 688

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AGIRRIEA+ G     +L  +D  ++ L++  K     +  RV  +  E +  Q 
Sbjct: 689 ETGVAAGIRRIEAVAGPAVLEYLNERDRVVRELSAQFKAKPQELPERVAALQAELKAAQK 748

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + + QL +            +AD+  +   +     + LK+  + L  K+  G ++L
Sbjct: 749 ELEEVRSQLALLQAEGLLAQAVAVADLKVLVAELGSTTPEALKTAAEHLLHKLGEGAVVL 808

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             + +  K S++   +  +      A       AK+ GGGG GGRP++AQ+GG    K  
Sbjct: 809 GSVPEAGKVSLVAAFSPAVQQLGLKAGSFIGEIAKLTGGGG-GGRPNLAQAGGKQPEKLA 867

Query: 887 QAIAGVASFLK 897
           +A+      L+
Sbjct: 868 EALQVARERLQ 878


>gi|254469063|ref|ZP_05082469.1| alanyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087873|gb|EDZ65156.1| alanyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 873

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/913 (40%), Positives = 539/913 (59%), Gaps = 57/913 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL FF++ GH ++ SSSL+P +DPTL+F N+GM  FK+ F G +KP Y
Sbjct: 1   MKSLTSNQIREIFLNFFREKGHTVVSSSSLVPSDDPTLLFANAGMNQFKDFFLGYKKPKY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ F
Sbjct: 61  TTATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAIQYAWELLTERF 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPC 172
            +   +L +TVY ED EA+ +WK +  + A+KII+I         DNFW M +TGPCGPC
Sbjct: 121 QIPAEKLLVTVYHEDTEAYDIWKNVIKIPAEKIIKIADKSEKYISDNFWMMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G  IPGG PGS  E+G+R+IEIWNLVFMQF +    E   LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGADIPGGPPGSEDEDGDRFIEIWNLVFMQFNRNENGEMEALPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++LI  + Q    K   ++  + +VI DH+RS +FLI DG+ 
Sbjct: 241 RISAVLQSVHSNYEIDLFQNLIHDAAQALKCKDLSHS--SLKVIADHIRSIAFLINDGVQ 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N+GRGYVLRRI+RRA+ +   LG TE  +M +L +L   M  AYPEL+     IE+T 
Sbjct: 299 PSNDGRGYVLRRILRRAIRHGYKLGATESFLMPILNSLAKNMQEAYPELLTNIKKIEKTT 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
             E+++F +T+  G+ +L+  ++     K  +L+G VAFKL+DT+G P+D+  DI     
Sbjct: 359 LQEEDKFFETIANGMSILEQEINLTKKNKSTMLSGSVAFKLHDTYGFPIDLTADICREHN 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F+Q + EQ+++A+  S             S+      T+F+ Y         
Sbjct: 419 IT-IDQAGFDQDMAEQKNKAKNASQFKAKD-------SIVIDIDPTKFLAYTH------- 463

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                           N   S +++I+   E   E  +     +V  ++PFYAE+GGQ+G
Sbjct: 464 ----------------NEEFSTIESIILNNEPAVEVSANSTCNLVVKESPFYAESGGQVG 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D     + D QK   G+ +H   + RG L+ +  ++  +D+  R  +  NHSA
Sbjct: 508 DTGRIFNDQAEFVVHDTQKLPNGVILHIGELVRGQLKIKDPVLCQVDHIRRDSIKRNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL TILG HV Q GS +     RFD +HS  ++  E++ +E  VN+ I QN P 
Sbjct: 568 THLLHKALKTILGDHVEQKGSLVNEFRTRFDFSHSSALSETEIQQVEQIVNNEILQNNPT 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              +M  + A  SGA  L G KY+D VRV+++        S  LCGGTHV++TG+I L  
Sbjct: 628 SAEVMALDKAKKSGAMMLFGEKYDDEVRVLTIGN------SKELCGGTHVNATGDIGLFK 681

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++ES I +G+RRIEA TG      +  Q++ L + A  LK ++ +V  +++++ ++ + 
Sbjct: 682 ILNESGISSGVRRIEATTGVSLIQIIDKQNQLLNATAKELKTTKDDVAEKIKQVIDQVKT 741

Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +   A+ K ++              I     +S  I  ++  +L++++D L+  I SGI
Sbjct: 742 QEKTIAQLKQKITNASKNDLLDQIEVIDGTKVLSTNIDNMEIPQLRALIDDLKNNIGSGI 801

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L  I++  K ++ + VT+D+ ++F+A  +A   A ++ GG GGG+P MA +GG N N 
Sbjct: 802 IILATINQ-GKINIAVGVTKDITNQFHAGKIAGQLANMV-GGNGGGKPDMAMAGGQNIND 859

Query: 885 ADQAIAGVASFLK 897
             +A+  +   L 
Sbjct: 860 LPEALIKIKKLLN 872


>gi|118594479|ref|ZP_01551826.1| alanyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
 gi|118440257|gb|EAV46884.1| alanyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
          Length = 872

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/913 (39%), Positives = 528/913 (57%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL+FF+  GH ++ SSSL+P  DPTL+FTN+GM  FK++F G+E+  Y  
Sbjct: 1   MLSSQHIRAQFLKFFEDKGHHVVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGEEQRNYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F +
Sbjct: 61  AASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFAWELLTEVFAI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L +TVY +D EA+ +W+K  G+  +KII+I  N       DNFW M +TGPCGPCS
Sbjct: 121 PKEKLLVTVYADDNEAYSIWEKDIGIPTEKIIKIGDNKGSQYASDNFWMMGDTGPCGPCS 180

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG+PGS +E+G+R+IEIWNLVFMQF + +K     LPK S+DTGMGLER
Sbjct: 181 EIFYDHGDTIEGGVPGSHNEDGDRFIEIWNLVFMQFNRDDKGVMHPLPKPSVDTGMGLER 240

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  +LQ+  +NYDID+F+ LI  + ++   K       + +V+ DH+R+++FLI DG+LP
Sbjct: 241 ITAILQDVHSNYDIDIFRELIAEAAKL--TKTNNTEHPSLKVLSDHIRATTFLIGDGVLP 298

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           ANEGRGYVLRRI+RRA+ +   LG   P    L+  L   MG  Y    +   LIE  + 
Sbjct: 299 ANEGRGYVLRRIIRRAIRHGYKLGVRAPFFFKLVAPLNLVMGDTYRFSKEQSSLIESEIH 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF +T++ G+ +L+  +  L       ++G VAFKL+DT G PLD+  D+    G 
Sbjct: 359 LEEKRFFETIENGMGILEDTIKELVGKNKTAISGKVAFKLHDTFGFPLDLTADVCRENG- 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             I+   F+  +++Q++ AR            K    +      T F+GYD         
Sbjct: 418 ISINSEEFDAEMDKQKTMAREAGNF-------KAKLQINYSGPDTVFLGYD--------- 461

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                          +  S+I+  I+   + V    +G+   ++ DQTPFYAE+GGQ+GD
Sbjct: 462 --------------KSSTSAILLGILTHEQSVASITNGESAMLILDQTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +     +TD  K    I+VH   + +G L     +   I++++R+ +  NHSAT
Sbjct: 508 IGSISSEEGVFDVTDTFKIKGNIYVHVGSMIKGKLSINDKIEADINHEHRQHVMRNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  ILG+H+ Q GS +     RFD +H KP+T  E  SIE  VN  I +N    
Sbjct: 568 HLMHKALKEILGNHIEQKGSLVDSYRTRFDFSHPKPLTYKEKTSIELMVNQEILKNQTTQ 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +M+ + A  +GA  L G KY D+VRV+ +        S  LCGGTHV+ TG+I L  I
Sbjct: 628 ASVMDIDSAKKTGAMMLFGEKYGDKVRVLEIGN------SKELCGGTHVAKTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SES I +GIRR+EA TG      +  Q+  + ++   L V    V  +V ++ ++ +  
Sbjct: 682 QSESGISSGIRRVEATTGLNVIGLIAAQETIIDNVTKELNVGASEVTSKVSQLMKQLKDN 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + I ++ K ++   + S             F+   +  V++ EL+ ++D L++K QS +I
Sbjct: 742 EKIISQLKSKIAGSEGSDLVGQAIDTGKYQFLGVSVDRVEANELREMIDNLKEKFQSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G     K S  + VT++L     A D+A+L  + +GG G GGR +MA +GGPN    
Sbjct: 802 IL-GSHSNNKVSFAVGVTDNLTQEIKAGDIAKLLGEAVGGKG-GGRDNMAMAGGPNIQLI 859

Query: 886 DQAIAGVASFLKK 898
           D+AI+ +   L K
Sbjct: 860 DEAISQIKDHLIK 872


>gi|167767297|ref|ZP_02439350.1| hypothetical protein CLOSS21_01816 [Clostridium sp. SS2/1]
 gi|167711272|gb|EDS21851.1| hypothetical protein CLOSS21_01816 [Clostridium sp. SS2/1]
          Length = 868

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/900 (39%), Positives = 509/900 (56%), Gaps = 48/900 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            +LEFF+  GH  L S SL+P ND +L+  N+GM P K  FTGQE P    VTT QKC+R
Sbjct: 1   MYLEFFESKGHLALKSFSLVPKNDNSLLLINAGMAPLKPYFTGQEVPPRTRVTTCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LTK   LD  RLY +V
Sbjct: 61  TG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTKVIGLDPDRLYPSV 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y++D+EAF++W+K  G++ ++I R    DNFW     GPCGPCSEI++D+GE    G P 
Sbjct: 117 YEDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGSPD 175

Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                + +RY+E+WN VF QFE         L   +IDTGMGLER+A V+QE  + +D+D
Sbjct: 176 CTVGCDCDRYMEVWNNVFTQFENDGHNHYTELENKNIDTGMGLERLAVVVQEVDSIFDVD 235

Query: 248 LFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             K +     +V G+ Y  +    V+ RVI DH+RS++F+++DGI P+NEGRGYVLRR++
Sbjct: 236 SIKAIRDEICKVAGVTYGADHETDVSIRVITDHIRSATFMLSDGITPSNEGRGYVLRRLI 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + RLLG     +  +   +  E    YPEL +    I   L  E+++F KT+D+G
Sbjct: 296 RRAARHGRLLGIDHLFLTDISKVVIRESKDGYPELEEKAEFIFNHLSQEEKQFNKTIDQG 355

Query: 366 LVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L  +   + +   + L G  AFKLYDT+G PLD+  +IL  +G   +D   F + ++
Sbjct: 356 LSILADMEKAMNEKGSKELAGADAFKLYDTYGFPLDLTIEILEEKGFT-VDKEGFEKEMQ 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR  ARA          +   +   +    T+F+GYD L                    
Sbjct: 415 VQRETARAARKTTNYMGADATVYEQLDPAMTTKFVGYDEL-------------------- 454

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                   + A+  + E+V     G K  +V DQT FYA +GGQ  D G  I      ++
Sbjct: 455 ---TCEGEITAMTTETEVVSTLNKGDKGTIVADQTAFYATSGGQEADKGVIISGDASFEV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DV K + G F H   V  G        V T++ +NR   + NHSATHLL  AL  +LG+
Sbjct: 512 EDVIKLSGGKFGHVGHVVEGTFNVGDKAVFTVNEKNRALGAKNHSATHLLQKALREVLGT 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS    + LRFD TH  P++  E+  +E  VN+ IAQ+LPVVT++M+ E+A  +G
Sbjct: 572 HVEQAGSLNNAEHLRFDFTHFSPLSDDEIARVEKIVNEKIAQDLPVVTKVMSMEEAKKTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRVVS+     G  S  LCGGTHV +TG I    I+SE+ + +G+RRI
Sbjct: 632 AMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVKNTGAITAFKILSETGVASGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+T Q   ++   Q+E+LK  A  LK +   ++ R+E +  E ++L+  +   K +L  
Sbjct: 687 EAVTDQGVFNYYHKQEEELKEAAKALKATPATLLTRIESLLAEVKELKSENESLKSKLAK 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + L        ++  V  ++  I +VD   L+ + D L++K+  G+I+L    K+ K  +
Sbjct: 747 DALGDVMDQVEEVKGVKLLATSIEDVDMNGLRELGDNLKEKLGEGVIVLAS-QKDGKVFL 805

Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + +VT++      +A +L +  A  +GGGG GGRP+MAQ+GG N     +A+A V   L+
Sbjct: 806 VAMVTDEAQKAGAHAGNLIKAIAGCVGGGG-GGRPNMAQAGGKNPAGIPEAVAKVKEILE 864


>gi|148244942|ref|YP_001219636.1| alanyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
 gi|205830283|sp|A5CVU0|SYA_VESOH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146326769|dbj|BAF61912.1| alanyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
          Length = 865

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/902 (40%), Positives = 531/902 (58%), Gaps = 44/902 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F+  GH +  S+SLIP ND TL+F N+GMVPFK++F+G EK  Y   
Sbjct: 1   MKTAQIRQKFLDYFESKGHIIESSASLIPHNDKTLLFVNAGMVPFKDVFSGIEKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LTKE +L 
Sbjct: 61  VSVQRCARAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIHYAWEFLTKELNLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           ++ L+++V+D+D EA  +W    G   ++I R    DNFW M +TGPCGP SEIF+D GE
Sbjct: 121 KKNLWVSVFDQDNEAEDIWVNEIGFPKNRISRCGAKDNFWQMGDTGPCGPSSEIFYDHGE 180

Query: 182 CIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG P  ++E+G+RYIEIWNLVF +F++Q       L    +DTGMGLER+  VLQ K
Sbjct: 181 HIAGGPPGHANEDGDRYIEIWNLVFTEFDKQEDGYLKPLAVPCVDTGMGLERLVAVLQHK 240

Query: 241 TNNYDIDLFKHLIQASEQVTGM-KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            NNYD D F++L++A   +T       +N  + RVI DH+RS++F+I DG++P+NEGRGY
Sbjct: 241 NNNYDTDGFQNLVKAVVNLTPKFNNIKDNNASVRVITDHIRSAAFMIVDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RR + +   +G  +     L   L  E    YPEL QA   +E+ L+ E++RF 
Sbjct: 301 VLRRIIRRGIRHGHKMGIGKVFFYRLASILALEFKDVYPELEQALSKVEKVLKREEQRFS 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD+G+ +L+ V+++    EI NG + FKLYDT+G P+D+  DI   R L  ID+  F 
Sbjct: 361 KTLDQGMSILEEVITNFKGSEI-NGKIVFKLYDTYGFPVDLTSDIARERNLT-IDMSGFE 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +QR RAR         +  KI     +    T+F+GY  L+               
Sbjct: 419 VEMTKQRDRARQA-------SDFKISEKGVDIAERTEFLGYKQLKNV------------- 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S+++AI+   E+VE+   G    VV  Q+ FYAE+GGQ+GD G      +
Sbjct: 459 ----------SLIQAIINNNELVEKIEVGDHGIVVLAQSSFYAESGGQIGDKGILSNMQV 508

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++    K+  G F HH ++ +G+L+   ++   +D ++R+ ++ NHSATHLLH AL  
Sbjct: 509 EFRVDHTNKQKSGAFEHHGVLNKGVLKVSDAVQANVDKKSRKCIARNHSATHLLHAALHI 568

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG  V Q GS +  + LRFD ++ K I  ++L+ IE  VN  I  N  V T I N E A
Sbjct: 569 VLGKAVMQKGSLVGSEKLRFDFSYDKVIVKSDLERIESIVNRKILGNTKVYTDITNIEGA 628

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA  L G KY D VRV+++        S  LCGGTHV+  G+I L  I+SESS+ AG
Sbjct: 629 KKKGAMTLFGKKYGDTVRVLTMGK---NEFSVELCGGTHVNQLGDIGLFRIISESSVSAG 685

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KR 777
           +RRIEA+TG  A          L  +A   + S   VVG+V ++ ++ ++L+   A  ++
Sbjct: 686 VRRIEALTGYDAYQFDNRIQNSLNKIAQMTRSSNTEVVGKVTQLIKQQKELEKQIATFQK 745

Query: 778 KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K+  N  D   +   ++  +  +S ++  V SK+L++++D L+ K+ S +I+L  +  + 
Sbjct: 746 KIANNQGDDLIVQAQEVKGIKLLSTVVEGVTSKDLRNIVDKLKDKLSSAVIVLAVVIND- 804

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S++  VT+DL  ++ A  +    AK + GG G GR  MAQ GG       +A+A V S
Sbjct: 805 KVSLVTGVTKDLTKQYQARKILNHVAKQI-GGKGDGRSDMAQGGGTKPECLIKALASVKS 863

Query: 895 FL 896
            +
Sbjct: 864 LI 865


>gi|315651872|ref|ZP_07904875.1| alanine--tRNA ligase [Eubacterium saburreum DSM 3986]
 gi|315485874|gb|EFU76253.1| alanine--tRNA ligase [Eubacterium saburreum DSM 3986]
          Length = 885

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/906 (38%), Positives = 511/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ IR  FLEFF+  GH ++ S SL+P ND +L+  NSGM P K  FTGQE P  + V T
Sbjct: 12  VNQIRKKFLEFFESKGHLVMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVCT 71

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD  
Sbjct: 72  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVAGLDPN 127

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++W K  G+ AD+I +    DNFW   E GPCGPCSE+++D+GE  
Sbjct: 128 RLYPSVYLDDDEAFEIWNKEIGIPADRIYKFGKEDNFWEHGE-GPCGPCSEVYYDRGEKY 186

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +RY+EIWN VF QF    K     L + +IDTGMGLER+A  LQ+  
Sbjct: 187 GCGKPTCTVGCDCDRYMEIWNNVFSQFNSDGKGNYTELIQKNIDTGMGLERLAVALQDVE 246

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +++D  K L+    ++    Y+ +    V+ R+I DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 247 SIFEVDTIKALLDKVAELAHTSYKEDEKKDVSLRLITDHIRSCTFMISDGIMPSNEGRGY 306

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R+LG  +  + +L   +       YPEL + K +I + L  E+ +F 
Sbjct: 307 VLRRLLRRAARHGRMLGIKDTFLANLANKVIELSKDGYPELEEKKEMILKVLTEEENKFN 366

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +  +L K    I++G+ AF+LYDT+G PLD+ ++I+  +G + +D   
Sbjct: 367 KTIDQGLSILSDIEENLSKSGQRIISGEDAFRLYDTYGFPLDLTKEIIEEKGFS-VDEDG 425

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN+A+E QR++ARA          +   +   +    + F GYD L              
Sbjct: 426 FNKAMEAQRNQARAARKATNYMGADVTIYQSLDPKLTSVFEGYDSLTD------------ 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +  + A+  + EIVE    G    ++ D+T FYA  GGQ  D G     
Sbjct: 474 -----------TGKITALTTEDEIVEAVAEGDHGTIILDKTSFYATMGGQNADIGIIKTA 522

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + DV K       H   V +G+ +   ++   +D +NRR+ + NHSATHLLH AL
Sbjct: 523 NSVFNVVDVIKLGGNKIGHVGYVSQGMFKLGDTVETVVDAENRRRTAANHSATHLLHKAL 582

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS +    LRFD TH K ++  EL  +E  VN  I ++LPVVT +M+ E
Sbjct: 583 REVLGNHVEQAGSYVDARRLRFDFTHFKSLSKEELDDVEALVNREINKSLPVVTDVMDVE 642

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A  SGA AL G KY   VRVVS+     G  S  LCGGTHV +T +I L  I+S++ I 
Sbjct: 643 SAKKSGAMALFGEKYQKDVRVVSM-----GDFSKELCGGTHVHNTADIKLFKIISDNGIA 697

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T           + ++   A  LK ++  +V + E + EE + L+  + K 
Sbjct: 698 AGVRRIEALTNDGVIEFYKNIENRMNECAKLLKTNENELVSKTESVLEEIKTLKSENEKL 757

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  E L     S  +I  + F++  +S V+  EL+++ D L+  +  G+++L     
Sbjct: 758 KAKLASEALGDSKESIEEIGGIKFIAMHVSGVEMNELRNLGDKLKSDVDDGMVVLAS-DV 816

Query: 833 EKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K ++L +   + L    +A ++ +  A ++GGGG GGRP++AQ+GG N      A+  
Sbjct: 817 DGKVNLLCMAGDKALAVGAHAGNIIKGIAAIVGGGG-GGRPNIAQAGGKNPKGIKDALDK 875

Query: 892 VASFLK 897
                K
Sbjct: 876 AKEVFK 881


>gi|289578243|ref|YP_003476870.1| alanyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289527956|gb|ADD02308.1| alanyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 877

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/906 (38%), Positives = 534/906 (58%), Gaps = 51/906 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + +TT 
Sbjct: 7   NEIREKYLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKAYFTGKEVPPSKRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C+R      D++ VG+T RH TFFEMLGNFS G YFK+ AI  AW+ +T+   L   R
Sbjct: 67  QRCIRT----PDIERVGKTARHGTFFEMLGNFSIGDYFKKEAIPWAWEFVTEILKLPVDR 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++++Y+ED+EAF++W KI GL +++I+R+   DNFW +  TGPCGPCSEI+FD+GE   
Sbjct: 123 LWVSIYEEDDEAFEIWNKIVGLPSERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEKG 181

Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P      + +R+IE WNLVF QF +  +     LP  +IDTGMGLERMAT++Q   +
Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERMATIMQGVDS 241

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D+ + +     ++  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGYV
Sbjct: 242 IFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I+  ++ E+ERF +
Sbjct: 302 LRRLLRRAARHGKLLGINDAFLYKVVDSVVENYGEAYPEIIERKDYIKRIIKVEEERFKE 361

Query: 361 TLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+GL +L   ++   L    +L G  AFKLYDT+G PLD+ ++IL   G   +D   +
Sbjct: 362 TIDQGLTILQDYINELKLQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEVG-IVVDEEGY 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + LE+QR RAR+      S   + I+ +L +    T+F+GY                  
Sbjct: 421 TKELEKQRIRARSRRKEDNSLWEQDIYSTLGDI--KTKFVGYT----------------- 461

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                 T G +S V AIV++ E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    + 
Sbjct: 462 ------TYGCNSKVLAIVKEEELVEEAEAGDDVSIILDITPFYAESGGQIGDKGVLENEN 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + +++ D +K  +  FVH   +ERG++     +   ID  +R   + NH+ATHLLH AL 
Sbjct: 516 VLIRVKDCKKIGDK-FVHIGTIERGLISVGDDVKARIDVVSRNNAARNHTATHLLHKALK 574

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       ++
Sbjct: 575 EILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKKIENRVNEKIYQSLNVYIEEKTYDE 634

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  GA AL   KY D+VRVV +       +S  LCGGTHV +T EI L  +VSES++ A
Sbjct: 635 ALKEGAVALFTEKYGDKVRVVRI-----DDYSVELCGGTHVKNTNEIGLFKVVSESAVGA 689

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG  A  +L  ++E LK  +  LK     +V ++E + +  +       + K
Sbjct: 690 GLRRIEALTGPYAIKYLEEKEEILKGASDLLKAQDKELVSKIEGLQQALKAKDKEIEQLK 749

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           +++          S   +  +  +   I + DS+ LK++ D L+ K+++ +++L   + E
Sbjct: 750 IKMASILADSLINSAISLDGIRVVVSKIEDYDSEALKALGDILKDKLKTAVVVLASSTLE 809

Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            KA  + + T+D++    N   + + + K +  G GGGRP +AQ  G N +K  +A+   
Sbjct: 810 -KAIFVGMATKDVVQKGINMGAVIKEACK-VSEGNGGGRPDIAQGTGKNPSKVKEALDKA 867

Query: 893 ASFLKK 898
              +K+
Sbjct: 868 IEVVKE 873


>gi|121535965|ref|ZP_01667759.1| alanyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121305457|gb|EAX46405.1| alanyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 869

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/905 (39%), Positives = 517/905 (57%), Gaps = 55/905 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF    H +LPS+SLIP NDPTL+   +GM PFK  FTG+ KP +  +
Sbjct: 1   MTGNELRKKFLQFFASKDHLVLPSASLIPENDPTLLLIGAGMAPFKPFFTGKMKPPHPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR G    D++NVGRT RHHTFFEMLGNFSFG YFK  AI  +W+ +T+  +L 
Sbjct: 61  ATCQKCVRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKREAITWSWEFITEHLNLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+IT++ ED+EAF++W K  G+  D+I+R+   DNFW +   GPCGPCSEI  D GE
Sbjct: 117 KDKLWITIHTEDDEAFEIWHKEVGVPVDRIVRL--EDNFWEIGP-GPCGPCSEIHIDLGE 173

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P        +RY+EIWNLVF Q+++  +     L K +IDTG GLER+A+VLQ 
Sbjct: 174 ERGCGKPDCRVGCSCDRYLEIWNLVFTQYDRDEEGNYTPLAKKNIDTGAGLERIASVLQN 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K +N++ DL   +I+ + +V G+ Y       V+ +VI DH RS + +IADG+LP+NEGR
Sbjct: 234 KRSNFETDLLFPIIEHTAKVAGVTYGESAKTDVSLKVIADHGRSLTIMIADGVLPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + RLLG  +P +  ++  +       YPE+   K  I++ ++ E+ER
Sbjct: 294 GYVLRRILRRAVRHGRLLGIDKPFLADIVDVVANIFAEPYPEINDKKAYIKKVVQLEEER 353

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL +G+ LL+  +  L +    +L+G   FKLYDT G P ++ Q+IL    +  +D 
Sbjct: 354 FNATLAQGMELLNSHIRVLKESGKTVLDGATGFKLYDTFGFPWELTQEILAEHDME-LDR 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+QA++EQR RARA                L      TQ + YD              
Sbjct: 413 AGFDQAMDEQRQRARAARQENEERVVVPDLSGLV-----TQELKYD-------------- 453

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        S+ V  ++Q G++VE A  GQ+V ++ D TPFYAE GGQ+GD+G   
Sbjct: 454 ---------PQAESARVVLVLQDGKVVEAAHDGQEVALILDVTPFYAEGGGQVGDSGTLT 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                + +   +K  +G   H   V  G ++    + + +D   RR  S NH+ATHLLH 
Sbjct: 505 AQYGTVAVVTARKLPDGTIYHVGSVTEGTIKPGDMVKIAVDAARRRDASRNHTATHLLHA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS + PD LRFD +H  P+T  +L  +E+ VN++I +N+ V      
Sbjct: 565 ALKKVLGEHVNQAGSYVGPDRLRFDFSHFAPVTVEQLAEVENMVNEVILRNIAVGRIETT 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +E A   GA AL G KY +RV VV +        S  LCGGTHVSST EI    IVSE+ 
Sbjct: 625 QELAREMGATALFGEKYGERVSVVII-----DDFSKELCGGTHVSSTAEIGQFKIVSETG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +GIRRIEA+TG  A  ++  ++E L++ A  LK    ++VGR++ +    + L+   A
Sbjct: 680 IGSGIRRIEAVTGYAALEYIRSREEILQAAALALKSRPEDLVGRIDGVLARVKDLEKELA 739

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +L    +        +I  V  ++  +   D  +L+S  D ++ +++SG++ L  +
Sbjct: 740 ALKTKLAKFAVEDLLANKKEINGVALVAGQVDAADMDDLRSTADLVRDRLRSGVVALGAV 799

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + E K + +++ T D + R  +A ++ +  AKV GGGG GGRP MAQ+GG    K   A+
Sbjct: 800 TGE-KVNFVVMATADAVARGVHAGNIIKEMAKVAGGGG-GGRPDMAQAGGKQPAKLADAL 857

Query: 890 AGVAS 894
                
Sbjct: 858 RIAQE 862


>gi|302386453|ref|YP_003822275.1| alanyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302197081|gb|ADL04652.1| alanyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 879

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/912 (38%), Positives = 513/912 (56%), Gaps = 50/912 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  V+ +R  FLEFF+   H  + S SL+P ND +L+  NSGM P K  FTGQE P  
Sbjct: 1   MKNYGVNELRRMFLEFFESKEHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI  +W+ LT   
Sbjct: 61  RRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWSWEFLTGVI 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY ED+EAF++W K  G++ ++I R    DNFW     GPCGPCSEI++D
Sbjct: 117 GLDPDRLYPSVYLEDDEAFEIWNKKIGIAPERIFRFGKADNFWEHG-AGPCGPCSEIYYD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      + +RY+E+WN VF QFE         L + +IDTGMGLER+A V
Sbjct: 176 RGEKYGCGSPDCTVGCDCDRYMEVWNNVFTQFENDGHGNYEELAQKNIDTGMGLERLAVV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D  K L+     +   +Y+ N    V+ R+I DH+RS +F+I+DGI+P+N
Sbjct: 236 VQDVDSIFDVDTIKALLNRVAALARTEYKKNADVDVSLRLITDHVRSCTFMISDGIMPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG     +  L   +       YPEL + K +I + L  E
Sbjct: 296 EGRGYVLRRLLRRAARHGRLLGIEGKFLADLSTTVIELSKDGYPELEEKKAMILKVLTQE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +++F KT+D+GL +L  +   +    + IL+G+ AFKLYDT+G PLD+  +IL  +   G
Sbjct: 356 EDKFNKTIDQGLAILGELEEEMVKKGETILSGENAFKLYDTYGFPLDLTLEILEEKNF-G 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+++QR  AR           +   +   +    T+FIGYD L         
Sbjct: 415 VDEEGFKAAMQKQRETARNARKTTNYMGADVTVYQSIDPAITTEFIGYDKL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +    ++VE    G+   +V +QT FY   GGQ GD G
Sbjct: 466 --------------ICDSKILVLTTDTDLVEALTDGETGTIVTEQTVFYGTMGGQQGDVG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + D    ++ +      G   H   + +G+L++   + L +   NR+    NHSATHL
Sbjct: 512 YIVSDRGEFKVEETIHLQGGKVGHVGKMAKGMLQSGDVVTLKVCEGNRQNTGKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +  D LRFD TH   +T  E++ +E  VN+ I ++LPV T 
Sbjct: 572 LQKALRTVLGSHVEQAGSFVDGDKLRFDFTHFSAMTPEEIRQVETLVNEKIKESLPVKTE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  EDA  SGA AL G KY D VRVV +     G  S+ LCGGTH+++TG I    I+S
Sbjct: 632 IMTLEDAKKSGAMALFGEKYGDTVRVVKM-----GDFSTELCGGTHINNTGVIGSFKILS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG+RRIEA+TG     +    +++L   A   K     +  ++E + +E + L  
Sbjct: 687 ETGIAAGVRRIEALTGDGLMHYYQETEKELHEAAKAAKTMPSALTSKIESLLDEIKALHS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + K K +L  + L        ++  V  ++  + +VD   L+++ D L++K+  G+I++
Sbjct: 747 ENEKLKSRLAKDSLGNVMDQVKEVKGVKILATKVMDVDMNGLRNLGDQLKEKLGEGVIVI 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             I ++ K +++  VT++   +  +A +L +  A ++GGGG GGRP+MAQ+GG N +  +
Sbjct: 807 ASI-QDDKVNLMAAVTDEAQKKGAHAGNLIKAIASLVGGGG-GGRPNMAQAGGKNPSGVE 864

Query: 887 QAIAGVASFLKK 898
             +  V   + +
Sbjct: 865 ACLEKVTEVVAE 876


>gi|269925210|ref|YP_003321833.1| alanyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269788870|gb|ACZ41011.1| alanyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 879

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/907 (39%), Positives = 517/907 (57%), Gaps = 47/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ FLEFF+  GH ++PSSSL+P  DPTL+FTNSGMV FK++F G+E   Y   
Sbjct: 1   MKSSEIRSKFLEFFEARGHTVVPSSSLVPAKDPTLLFTNSGMVQFKDVFLGRESRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG + RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L+
Sbjct: 61  TTAQKCMRAGGKHNDLENVGPSARHLTFFEMLGNFSFGDYFKREAIGYAWEFVTQVLGLE 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ TV+  D+EA  LW++++GL   +IIR+   DNFW MA+ GPCGP SEIF+D+G 
Sbjct: 121 PSRLWATVHYTDDEAASLWQEVAGLPESRIIRMGDEDNFWQMADVGPCGPNSEIFYDRGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P    + +  R+ E WNLVFMQ+ Q     R  LPK +IDTG+GLER + ++Q 
Sbjct: 181 EKGCGDPNCTPAHDCGRFWEFWNLVFMQYYQDESGNRTPLPKKNIDTGLGLERTSAIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + ++ DLF  ++   +++     +     IV +RVI DH RS +FLIADG+ P NEGR
Sbjct: 241 VDSIFETDLFVPIMDEVQRIAGHSDEDRRREIVAYRVIADHSRSLAFLIADGVTPGNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
            YVLRRI+RRA+ + R +G     +      +   MG  Y EL      I++  R+E+E 
Sbjct: 301 SYVLRRIIRRAIRFGRRIGIEGHFLSDTARVVVDIMGHHYTELEDQWSFIDKVTRAEEEH 360

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL RG+  LD ++  L     + + G+ AF+LYDT+G PLD+  ++   RG + +D 
Sbjct: 361 FSRTLARGVAQLDDLIDKLSASGQKEIPGEDAFRLYDTYGFPLDLTLELARDRGFS-VDT 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A+E QR+++RA S             S       TQF GY  L            
Sbjct: 420 EGFKRAMERQRAQSRAASTFTAKMPAAYAALS----GEPTQFTGYTTLED---------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        +  V AI+++GE+V++   GQ+ E++ D+TPFYAEAGGQ+GDTG   
Sbjct: 466 -------------TGRVMAIIREGELVDKVEHGQEAEILLDRTPFYAEAGGQVGDTGVIT 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G      + D Q+   G  +H   V  G +    ++ L +D + R+ +  NH+ATH+LH 
Sbjct: 513 GPEGDFHVLDTQRPVNGYILHRGRVLHGSISVGQNVDLVVDARRRQDIMRNHTATHILHK 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L  +LG H  Q GS + PD LRFD TH   ++  E   IE  +ND+   +  V  +   
Sbjct: 573 TLRDVLGPHARQAGSLVAPDRLRFDFTHPSQLSDEEFFEIERIINDVSQDDRKVYAQEKP 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +AIASGA AL G KY D VRVVS+E      + S LCGGTHV  TGEI  +YI SE S
Sbjct: 633 YTEAIASGAMALFGEKYGDIVRVVSIE-----DYGSELCGGTHVHHTGEIGPIYITSEGS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RR+EA+TG+ A  +   + E L+ L + LKV    +  +V  + E  R+ +    
Sbjct: 688 IASGVRRVEAVTGRGAIKYARERMELLERLGAKLKVPTSEIERQVALLQERLREQERQIE 747

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + + QL   ++     +  ++     +    S    + +  + D L+ +++SG+++ VG 
Sbjct: 748 QLRRQLAAGEIDQMLRNVRQVDGTKLLVAQTSLDSREAMSDLADRLRDRLRSGVVV-VGS 806

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K S++ VVT DL+    +A  L +  + ++GGGG GGRP  A++GG    K ++A+
Sbjct: 807 VLQGKPSIVAVVTPDLVQKGVHAGKLVKEISALVGGGG-GGRPDRAEAGGRFPEKLEEAL 865

Query: 890 AGVASFL 896
             V   L
Sbjct: 866 GSVDEVL 872


>gi|225570650|ref|ZP_03779673.1| hypothetical protein CLOHYLEM_06750 [Clostridium hylemonae DSM
           15053]
 gi|225160477|gb|EEG73096.1| hypothetical protein CLOHYLEM_06750 [Clostridium hylemonae DSM
           15053]
          Length = 879

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/907 (37%), Positives = 507/907 (55%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLE+F+  GH ++ S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEYFESKGHLIMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPKKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ +I+  W+ LT    L+  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKESIRWTWEFLTDVVGLEPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EA+++W K  G++ ++I R    DNFW    +GPCGPCSE+++D+G   
Sbjct: 122 RLYPSVYLDDDEAWEIWNKDIGIAPERIFRFGKEDNFWEHG-SGPCGPCSEVYYDRGPKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+EIWN VF QF+         L + +IDTGMGLER+A V+Q   
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNNNYTELEQKNIDTGMGLERLACVVQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L      +T  +Y  ++   V+ RVI DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SMFDIDTIKALRDHVCHITKTEYGQDDETDVSLRVITDHIRSVTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     ++ L   +       YPEL + K  I + +  E+E+F 
Sbjct: 301 VLRRLLRRACRHGRLLGVEGEFLVELARTVIEGSRDGYPELEEKKDFIFKVIAKEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + + K+  + L+GD AFKLYDT+G PLD+ ++IL  +GL+ +D   
Sbjct: 361 KTIDQGLSILAEMEAEMEKNGEKTLSGDHAFKLYDTYGFPLDLTKEILEEKGLS-VDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  ++E QR  AR           +   +        ++F+GYD L              
Sbjct: 420 FRASMEVQRRTAREAREVTNYMGADATVYESIAPEVTSEFVGYDNL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V  +  + EI +    G +  V  ++TP YA +GGQ  D G     
Sbjct: 466 ---------SFESSVTVLTTETEITDALSDGDRGTVFVEKTPLYATSGGQEADKGYIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ DV K   G   H   V +G+++T  ++ L +D +NR   + NHSATHLLH AL
Sbjct: 517 DGEFRVEDVVKLLGGKIGHVGYVTKGMIKTGDTVTLEVDEENRALSARNHSATHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG+HV Q GS +  + LRFD TH   +T  ELK +E+ VN  I   LPV    +  E
Sbjct: 577 RTVLGTHVEQAGSSVNAERLRFDFTHFSALTKEELKKVEEIVNAQIMAALPVKVENLPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GAAAL G KY D VRVVS+     G  S   CGGTHV +TG I    I+SE+ + 
Sbjct: 637 EARKTGAAALFGEKYGDIVRVVSM-----GDFSVEFCGGTHVENTGVITAFKIISETGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    +++L   A  +K S   +  ++  +  E + L       
Sbjct: 692 AGVRRIEALTSKGLLDYYDELEKRLAEAAKLVKASPDKLAEKITHLLAENKTLHSEVESL 751

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  +          ++  V  ++  +  VD   L+ + D L+ K+  G+I++   + 
Sbjct: 752 KSKLAQDAMGDVMDQVTEVKGVKLLATEVEGVDMNGLRDLGDQLKDKLGEGVIVIASAA- 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K +++   T+  +++  +A +L +  A ++GGGG GGRP+MAQ+GG N +    AIA 
Sbjct: 811 GGKVNLMATATKGAIEKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPDGISSAIAK 869

Query: 892 VASFLKK 898
               L++
Sbjct: 870 AGEVLEE 876


>gi|15644148|ref|NP_229197.1| alanyl-tRNA synthetase [Thermotoga maritima MSB8]
 gi|6707752|sp|Q9X1B6|SYA_THEMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|4981959|gb|AAD36467.1|AE001792_7 alanyl-tRNA synthetase [Thermotoga maritima MSB8]
          Length = 863

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/902 (39%), Positives = 533/902 (59%), Gaps = 48/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V
Sbjct: 4   MTSEEIREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + 
Sbjct: 63  ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + +L+++VY+EDEEAF++W +  GL   +I+R+   DNFW     TGPCGP +EIF+D G
Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKRILRMGKEDNFWGPAGPTGPCGPDTEIFYDTG 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C  G     +    R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   ++
Sbjct: 179 YSKGCPEGEGCTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D DLF+ +I+  E++TG+ Y+ +    V+ RVI DH+R+ +FLI++G+ P+NE
Sbjct: 239 QGVYSNFDTDLFQPIIKRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRAM +  LLG +EP +  ++ A+  +MG  YPE+++ + +++E L +E+
Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF KTL++G+ + D ++        ++ + AF+LYDT+GLPL++  +I   +G   +D+
Sbjct: 359 NRFLKTLEQGMKVFDEIVEK---KGKIDSEDAFRLYDTYGLPLELTLEIAKEKG-VEVDV 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +EEQ+ ++RA  +G         +     K   T+F GY+ L            
Sbjct: 415 QEFNKYMEEQQRKSRAA-MGDVEFARRYEYLEKLPKDFRTEFTGYEKLED---------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V  + +  E VEEA  G  VEVVF +TPFYAE GGQ+ DTG   
Sbjct: 464 -------------EGEVVLVARDDETVEEASEG-TVEVVFSRTPFYAEKGGQVSDTGMVE 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  +  V + +EG+ VH   +  G LR    ++L +D + R     NH+ATHLLH 
Sbjct: 510 WRDGKALVEYVFEASEGVIVHRIKILDGTLRRGQKVILRVDKKRREATMRNHTATHLLHA 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD LRFD TH K ++SAE++ +ED VN+ I + +PV  R  +
Sbjct: 570 ALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSAEIEQVEDLVNEWIMEAIPVEVRYTS 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A+ SG  AL   KY D V        +    S  LCGGTHV +TG+I L  I+SE S
Sbjct: 630 YEEAVKSGVVALFTEKYGDVV-----RVVEVPGVSKELCGGTHVKNTGQIGLFKIISEES 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TG  A   L  Q + +  L   L   +  +  RV  + E+ ++L+   +
Sbjct: 685 VSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKLS 744

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           + ++      +   +   V     +   V++K L  + D + KK   GI++L     E K
Sbjct: 745 QGRISEERIAMKQLE-DGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVILFS-KFENK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+++ V+E+LL +++A  +AR  AK L GG GGGR + AQ+GG +  +    +  +  F
Sbjct: 803 VSLVVKVSENLLGKYDASSIARNIAKEL-GGNGGGRKNFAQAGGRHPERIKDVLERLEEF 861

Query: 896 LK 897
           L+
Sbjct: 862 LR 863


>gi|170289222|ref|YP_001739460.1| alanyl-tRNA synthetase [Thermotoga sp. RQ2]
 gi|205830279|sp|B1LBS9|SYA_THESQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170176725|gb|ACB09777.1| alanyl-tRNA synthetase [Thermotoga sp. RQ2]
          Length = 863

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/902 (39%), Positives = 532/902 (58%), Gaps = 48/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V
Sbjct: 4   MTSEEIREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + 
Sbjct: 63  ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + +L+++VY+EDEEAF++W +  GL   KI+R+   DNFW     TGPCGP +EIF+D G
Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTG 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C  G     +    R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   ++
Sbjct: 179 YSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D DLF+ +I   E++TG+ Y+ +    V+ RVI DH+R+ +FLI++G+ P+NE
Sbjct: 239 QGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRAM +  LLG +EP +  ++ A+  +MG  YPE+++ + +++E L +E+
Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF KTL++G+ + D ++        ++ + AF+LYDT+GLPL++  +I   +G   +D+
Sbjct: 359 NRFLKTLEQGMKVFDEIVEK---KGKIDSEDAFRLYDTYGLPLELTLEIAKEKG-VEVDV 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +EEQ+ ++RA  +G         +     K   T+F GY+ L            
Sbjct: 415 QEFNKYMEEQQRKSRAA-MGDVEFARRYEYLEKLPKDFRTEFTGYEKLED---------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V  I +  E VEEA  G  VEVVF +TPFYAE GGQ+ DTG   
Sbjct: 464 -------------EGEVVLIARDDETVEEASEG-TVEVVFSRTPFYAEKGGQVSDTGMVE 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  +  V + +EG+ V    +  G LR    +VL +D + R     NH+ATHLLH 
Sbjct: 510 WRDGKALVEYVFEASEGVIVQRIKILDGTLRRGQKVVLRVDKKRRESTMRNHTATHLLHA 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD LRFD TH K ++SAE++ +ED VN+ I + +PV  R  +
Sbjct: 570 ALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSAEIEQVEDLVNEWIMEAIPVEVRYTS 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A+ SG  AL   KY D V        +    S  LCGGTHV +TG+I L  I+SE S
Sbjct: 630 YEEAVKSGVVALFTEKYGDVV-----RVVEVPGVSKELCGGTHVKNTGQIGLFKIISEES 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TG  A   L  Q + +  L   L   +  +  RV  + E+ ++L+   +
Sbjct: 685 VSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKLS 744

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           + ++   +  +   +   V     +   V++K L  + D + KK   GI++L     E K
Sbjct: 745 QGRISEKMIAMKQLE-DGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVILFS-KFENK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +++ V+E+LLDR++A  +AR  AK L GG GGGR + AQ+GG +  +    +  +  F
Sbjct: 803 VFLVVKVSENLLDRYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERIKDVLERLEEF 861

Query: 896 LK 897
           L+
Sbjct: 862 LR 863


>gi|281412824|ref|YP_003346903.1| alanyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281373927|gb|ADA67489.1| alanyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 863

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/902 (39%), Positives = 533/902 (59%), Gaps = 48/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V
Sbjct: 4   MTSEEIREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + 
Sbjct: 63  ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + +L+++VY+EDEEAF++W +  GL   KI+R+   DNFW     TGPCGP +EIF+D G
Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTG 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C  G     +    R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   ++
Sbjct: 179 YSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D DLF+ +I   E++TG+ Y+ +    V+ RVI DH+R+ +FLI++G+ P+NE
Sbjct: 239 QGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRAM +  LLG +EP +  ++ A+  +MG  YPE+++ + +++E L +E+
Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF KTL++G+ + D ++        ++ + AF+LYDT+GLPL++  +I   +G   +D+
Sbjct: 359 NRFLKTLEQGMKVFDEIVEK---KGKIDSEDAFRLYDTYGLPLELTLEIAKEKG-VEVDV 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +EEQ+ ++RA  +G         +     K   T+F GY+ L            
Sbjct: 415 QEFNKYMEEQQRKSRAA-MGDVEFARRYEYLEKLPKDFRTEFTGYEKLED---------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V  I +  E VEEA  G  VEVVF +TPFYAE GGQ+ DTG   
Sbjct: 464 -------------EGEVVLIARDDETVEEASEG-TVEVVFSRTPFYAEKGGQVSDTGMVE 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  +  V + +EG+ VH   +  G LR    +VL +D + R     NH+ATHLLH 
Sbjct: 510 WRDGKALVEYVFEASEGVIVHRIKILDGTLRRGQKVVLRVDKKRRESTMRNHTATHLLHA 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD LRFD TH K ++S+E++ +ED VN+ I + +PV  R  +
Sbjct: 570 ALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSSEIEQVEDLVNEWIMEAIPVEVRYTS 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A+ SG  AL   KY D V        +    S  LCGGTHV +TG+I L  I+SE S
Sbjct: 630 YEEAVKSGVVALFTEKYGDVV-----RVVEVPGVSKELCGGTHVKNTGQIGLFKIISEES 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TG  A   L  Q + +  L   L   +  +  RV  + E+ ++L+   +
Sbjct: 685 VSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKLS 744

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           + ++   +  +   +   V     +   V++K L  + D + KK   GI++L     E K
Sbjct: 745 QGRISEKMITMKQLE-DGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVILFS-KFENK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +++ V+E+LLDR++A  +AR  AK L GG GGGR + AQ+GG +  +    +  +  F
Sbjct: 803 VFLVVKVSENLLDRYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERIKDVLERLEEF 861

Query: 896 LK 897
           L+
Sbjct: 862 LR 863


>gi|218132498|ref|ZP_03461302.1| hypothetical protein BACPEC_00357 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992608|gb|EEC58610.1| hypothetical protein BACPEC_00357 [Bacteroides pectinophilus ATCC
           43243]
          Length = 868

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/901 (38%), Positives = 514/901 (57%), Gaps = 48/901 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            +L+FF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT QKC+R
Sbjct: 1   MYLDFFESKGHLKMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTTCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  RLY +V
Sbjct: 61  TG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDASRLYPSV 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y +D+EAF +W K  G++ ++I R    DNFW    +GPCGPCSEI++D+GE    G PG
Sbjct: 117 YVDDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKYGCGKPG 175

Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+  + +D+D
Sbjct: 176 CTVGCDCDRYMEVWNNVFSQFNNDGHGNYSDLIQKNIDTGMGLERLAVVVQDVDSIFDVD 235

Query: 248 LFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             + L     ++ G+ Y+ +    V+ RVI DH+RS +F+++DGI+P+NEGRGYVLRR++
Sbjct: 236 TLQALRNKVCEMAGVTYKEDEKTDVSIRVITDHIRSVTFMVSDGIMPSNEGRGYVLRRLL 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + RLLG     +  L   +       YPEL + K  I + +  E+++F KT+D+G
Sbjct: 296 RRAARHGRLLGIEGKFLSKLCETVIEGSKDGYPELDEKKAFIFKVIDQEEDKFNKTIDQG 355

Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L+ + + L K  ++IL+G  AFKLYDT+G PLD+ ++IL  +G+  ID   F  A+E
Sbjct: 356 LGILEQLEADLVKTGNKILSGADAFKLYDTYGFPLDLTKEILEEKGIT-IDEEGFKSAME 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR +AR           +   +   +    + F+GYD L                    
Sbjct: 415 EQRIKARTARKTTNYMGADATVYDEIDPAITSSFVGYDKLTN------------------ 456

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S V  +  +  +VE    G +  +V D+T FY   GGQ GD G         ++
Sbjct: 457 -----QSKVSVLTTEENVVEALSDGDRGTIVVDETVFYGSMGGQEGDRGVITSPEGEFRV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
                   G   H  ++ +G+++T  ++ LT+D   R     NHSATHLL  AL  +LG+
Sbjct: 512 DTTIHLKGGRIGHVGVMTKGMIKTGDTVTLTVDAPARAATCANHSATHLLQKALRDVLGT 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS + PD LRFD  H + +T  E+ S+E  VN+ IA+ LPVVT IM+ EDA  +G
Sbjct: 572 HVEQKGSYVDPDRLRFDFAHFQAMTPDEIASVESIVNEKIAEALPVVTNIMSLEDAKKTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D+VRVVS+     G  S+ LCGGTHV++T  IML  IVSES + AGIRRI
Sbjct: 632 AMALFGEKYGDKVRVVSM-----GDFSTELCGGTHVANTSNIMLFKIVSESGVAAGIRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG    ++    +  L       K     ++ R+  + +E + L   + K K +L  
Sbjct: 687 EALTGNGVLAYYRNIENTLAEACRTAKTEPSQLIHRIASMNDEIKSLSSENEKLKAKLAN 746

Query: 784 ED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           E       +  +I    F+   +++VD   L+++ D ++ KI SGI++L     + K ++
Sbjct: 747 EAVGDVLANVQEIGSFRFLPVSVADVDMNGLRTLGDNMKDKIGSGIVILASTQGD-KVNI 805

Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + + T+D + +  +A +L +  A ++GGGG GGRP+MAQ+GG N    D+ +A  A    
Sbjct: 806 IAMATDDAVAKGAHAGNLIKAVAPIVGGGG-GGRPNMAQAGGKNPAGIDEMLAKAAEVAA 864

Query: 898 K 898
           +
Sbjct: 865 Q 865


>gi|326791257|ref|YP_004309078.1| alanyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326542021|gb|ADZ83880.1| alanyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 881

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/911 (36%), Positives = 503/911 (55%), Gaps = 49/911 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   +++ +R  +L+FF+   H    S  L+P ND +L+  N+GM P K  FTGQE+P  
Sbjct: 1   MKNYSLNELREMYLKFFESKMHLRAKSFPLVPHNDNSLLLINAGMAPLKPYFTGQEEPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + +TT QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFKE AI+ AW+ +TK  
Sbjct: 61  RRMTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIEWAWEFVTKHL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++   RL+ TVY +DEEA ++W+   GL  +K+I +   DNFW     GPCGPCSEI+FD
Sbjct: 117 EIPVERLFATVYQDDEEAAEIWRNKIGLPNEKVIYMGKEDNFWEAGIDGPCGPCSEIYFD 176

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +G       P      + +RY+E WNLVF QFE+        L + +IDTGMGLER+A +
Sbjct: 177 RGPEFGCDSPDCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAAM 236

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q  ++ +D+D  K +     Q+ G+ Y     N V+ RVI DH+RS +F+ ADG+LP+N
Sbjct: 237 MQGVSSIFDVDTIKAIRDHVCQLAGVTYGENYKNDVSIRVITDHIRSVTFMAADGVLPSN 296

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV+RR++RRA+ +A+LLG     +  L+  +       Y EL      I + L  E
Sbjct: 297 EGRGYVMRRLLRRAVRHAKLLGIEGLFLKDLVKTVVDNSKHEYTELEDKYEYITKLLTVE 356

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++ F +T+DRGL +L   +  +  +   +L+G   F L DT+G P+D+  +IL  +GL  
Sbjct: 357 EKNFNETIDRGLNILKAHIDEMKAEGKTVLDGKACFTLSDTYGFPIDLTHEILEEQGLKA 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
            D   F   ++ QR +AR    G      ++  F+  +    T F+GYD L         
Sbjct: 417 -DEEGFKVEMDAQRQKARDARGGSKYMGADETIFNQMDSTMKTTFVGYDKLE-------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +  ++ +    E++E A  G  + VV  +TPFYAE+GGQ GDTG
Sbjct: 468 ---------------TTGTLEVLANDEELLEAAGCGDSIYVVISETPFYAESGGQAGDTG 512

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  +  ++D  K   G F HHA V  G +    S   T++  +R   S NHSATHL
Sbjct: 513 LITTATGKAVVSDTTKVIGGKFAHHAQVVEGSIEKGQSATFTVENVSRMDTSRNHSATHL 572

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G H+ Q GS +  D LRFD TH + +T  +L+ +E  VN+ I + L +  +
Sbjct: 573 LQKALREVVGGHIEQAGSNVNKDRLRFDFTHFEALTHEQLEKVEALVNEKILEGLTITIK 632

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  ++A   GA AL G KY   VRVV++     G +S  LCGGTH+ +T  I    I+S
Sbjct: 633 EMPIDEARKLGAMALFGEKYGQTVRVVNM-----GDYSVELCGGTHLQNTAAIGTFKIIS 687

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG+RRIEA+TG+ A       +  L  +++ +K  +  VV +VE +  E + L+ 
Sbjct: 688 ETGVAAGVRRIEAVTGRGALHFYQTMENSLNEVSALVKAKKTEVVKKVESMTIELKNLEK 747

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + K K ++              I  +  +   I E+D  +LK++ D+L+ ++Q G+++L
Sbjct: 748 ENEKLKAEIAASKAGALTEQAKTINGIKVLVSQIDELDMNDLKNMGDSLKDQLQDGVVLL 807

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +    + K +++ + T   +++  +   +    A V+GG G GGRP+MAQ+GG + +K  
Sbjct: 808 MSHVAD-KVNLVAMATPSAVEKGVHCGQIISAVAGVVGGKG-GGRPNMAQAGGKDASKIK 865

Query: 887 QAIAGVASFLK 897
           +AI    + + 
Sbjct: 866 EAITVAETTIN 876


>gi|120611698|ref|YP_971376.1| alanyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
 gi|205829963|sp|A1TRL4|SYA_ACIAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120590162|gb|ABM33602.1| alanyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
          Length = 948

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/931 (37%), Positives = 502/931 (53%), Gaps = 62/931 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR +FL+FF   GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 9   SVADIRKSFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 68

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L +
Sbjct: 69  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDSLKWAWELLTEVYGLPK 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI         +DNFW MA+TGPCGPCSEI
Sbjct: 129 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 188

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  IPGG PGS  E+G+R+IEIWN VFMQF+         LP   +DTGMGLER+A
Sbjct: 189 FYDHGPHIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERLA 248

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LIQA+ + TG     N   + +VI DH+R+++FL++DG++P+N
Sbjct: 249 AILQHVHSNYEIDLFAALIQAAARETGTADLAN--PSLKVIADHIRATAFLVSDGVIPSN 306

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I E L++E
Sbjct: 307 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHSLVKDLVAQMGDAYPKLREQEQRITEVLKAE 366

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDV--AFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  G+ LLD  L      + L       F         +    D+  A  +  
Sbjct: 367 EERFFETLANGMDLLDSALDIQLASKALQNKTLRWFASEGREEKLVSFKDDVQVAEAVLI 426

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF------SLKEKYGAT----------- 455
            D +   + ++  +      +      +  + W        L  K   T           
Sbjct: 427 SDELRSTEYMQRLKETVPGLNEVKTLHSVIRDWSGLTLPGDLAFKLHDTYGFPLDLTNDV 486

Query: 456 -QFIGYDLLRGSKFMKEDRKV-------------------LCQKPPIDLTNGVSSIVKAI 495
            +  G  +         DR+                       +         S+ + AI
Sbjct: 487 CRERGVTVDEDGFKAAMDRQKAQARAAGKFKMDKALEYGGEANRFSGYDGLTESAKIVAI 546

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
              G   +   +GQ   VV D TPFYAE+GGQ+GD G     G R  + D  K    ++ 
Sbjct: 547 YVDGTSAQALEAGQNGVVVLDNTPFYAESGGQVGDQGVIHAGGARFAVDDTLKIRADVYG 606

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           HH  +E G LR   ++   +D   R     NHS TH++H AL  +LGSHV Q GS +  +
Sbjct: 607 HHGRLESGTLRVGDAVQAEVDAALRAATMRNHSVTHIMHKALREVLGSHVQQKGSLVNAE 666

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             RFD  H+ P+T A+++ IE  VN+ I  N P   R+M+ E A  +GA  L G KY + 
Sbjct: 667 RTRFDFAHNAPVTDAQIREIERRVNEEILANTPTGARVMDIESAQKTGAMMLFGEKYGET 726

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRV+ +        S  LCGGTHV+ TG+I L  +V ES + AG+RRIEA+TG  A ++L
Sbjct: 727 VRVLDIG------TSRELCGGTHVARTGDIGLFKVVGESGVAAGVRRIEAVTGAGALAYL 780

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHK 790
              ++ +   A  L+     + GR+ +  E+ + L+   A  K +L              
Sbjct: 781 QQLEDTVAKAAGALRAPAAEITGRIGQALEQVKALEREVAALKGKLASSQGDELAGQAVD 840

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           +  +  ++  +   D+K L+  MD L+ K++S  I+L  +    K  +   VT D + + 
Sbjct: 841 VKGLKVLAATLPGADAKTLRDTMDKLKDKLKSAAIVLAAVD-GAKVQIAAGVTPDAMAKV 899

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            A +L    A  + GG GGG+P MA +GG +
Sbjct: 900 KAGELVNFVASQV-GGKGGGKPDMAMAGGTD 929


>gi|313623696|gb|EFR93847.1| alanyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 879

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/916 (38%), Positives = 514/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDESDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ++G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQADFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L +     ++ + G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      ++F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTDKSEFVGYNTTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +V+E  SG + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQDDTLVDEVASGSEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE++  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L  +  + K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 VLVLGAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGTALDYVSTWVKE 876


>gi|119487555|ref|ZP_01621165.1| alanyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119455724|gb|EAW36860.1| alanyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 891

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/916 (37%), Positives = 503/916 (54%), Gaps = 60/916 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL F+ + GH+++PS+SL+P  DPT++ T +GM+PFK IF GQ  P     T
Sbjct: 9   SGSEIRQKFLNFYAERGHKIMPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRPPEVPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI   W+L T+ F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKTQAIAWGWELSTEVFGLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+++D+EAF++W+   G+ A +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 124 ERLVVSVFEDDDEAFEIWRDEIGIPAHRIQRMGEDDNFWKSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   N
Sbjct: 184 L-GDDKIDLEDDTRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQSVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  + G+ Y+ ++     + +VI DH+R+   LI DG+  +N GRGY
Sbjct: 243 NYETDLIFPIIKTAADIAGIDYKKSDKKTQVSLKVIGDHVRAVVHLITDGVTASNIGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G        +           YP+  + + +I+  L+ E+ERF 
Sbjct: 303 ILRRLIRRVVRHGRLIGIEGEFTTKVAETAIRLSEEVYPQTRERETVIKAELQREEERFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEI------------LNGDVAFKLYDTHGLPLDIMQDILCA 407
           +TL+RG  LL  ++      EI            ++G  AF LYDT+G PL++ Q+I   
Sbjct: 363 ETLERGEKLLTDIIEKAISKEIPPQSPLSKGGGMISGKDAFVLYDTYGFPLELTQEIAEE 422

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D+  F   +EEQR+R++     +   T +     L E    T F+GY  L    
Sbjct: 423 SGLT-VDVSGFEVEMEEQRNRSKDAHETIDL-TVQGSLDKLAENIHPTAFLGYSELVS-- 478

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 ++VK I+ +G+ VE A +G KV++V DQTPFYAE+GGQ
Sbjct: 479 ---------------------EAVVKVILIEGKSVESAEAGTKVQIVLDQTPFYAESGGQ 517

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G        +++ DV +K   IF+H   VERGIL   M++   ID   RR+   NH
Sbjct: 518 IGDRGFLSFGDTVVRVKDV-QKESNIFIHLGKVERGILTVGMTVNAQIDRACRRRAQANH 576

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  I+   +SQ GS ++ + LRFD    + +T  E++ +ED VN  IA+  
Sbjct: 577 TATHLLQSALKLIVDPTISQAGSLVSFERLRFDFNCPRSLTPEEVQQVEDQVNSWIAEAH 636

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           P +   M  EDA   GA A+ G KY+D VRVV          S  LCGGTHV++T EI L
Sbjct: 637 PAIVAEMPLEDAKNKGATAMFGEKYSDVVRVVDYAG-----VSMELCGGTHVNNTAEIGL 691

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSE+ I +GIRRIEA+ GQ    +L  +D  +K L    K     +  R+  +  E 
Sbjct: 692 FKIVSETGISSGIRRIEAVAGQSVLDYLKVRDNVVKELGDRFKAKPEELPERITNLQNEL 751

Query: 768 RKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +  Q      K +L +            I D+  +   +  VD+  LK   + LQ+K+  
Sbjct: 752 KATQKQLEAAKGELAIAKSDQLLAEAETIGDIKILVAELPGVDADSLKKAAERLQQKLGE 811

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
             ++L    +E K S++   +  +    +  A       AK+ GGGG GGRP+ AQ+GG 
Sbjct: 812 SAVVLGSSPEEGKVSLVAAFSAKVHKEKKLQAGKFIGNIAKICGGGG-GGRPNFAQAGGR 870

Query: 881 NGNKADQAIAGVASFL 896
           + +K  +A+    + L
Sbjct: 871 DASKLSEALDTAKTQL 886


>gi|16800607|ref|NP_470875.1| alanyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|20532255|sp|Q92BK9|SYA_LISIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|16414012|emb|CAC96770.1| alanyl-tRNA synthetase [Listeria innocua Clip11262]
          Length = 879

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/916 (37%), Positives = 514/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSEDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDESDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ++G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L +     ++ + G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      ++F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTDKSEFVGYNTTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +V+E  SG + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQDDTLVDEVASGSEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V+   M   +A   GA AL G KY + VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VIIEEMPIAEAKELGAMALFGEKYGEVVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE++  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVRRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L  +  + K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 VLVLGAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGTALDYVSTWVKE 876


>gi|42520697|ref|NP_966612.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|48428514|sp|P61709|SYA_WOLPM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|42410437|gb|AAS14546.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 877

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/899 (43%), Positives = 556/899 (61%), Gaps = 51/899 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F++FF  N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +  
Sbjct: 1   MKLNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE  LD
Sbjct: 61  VSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL ITVY  D+EA+++W+KISG S+DKIIRITT+DNFWSM  TGPCGPCSEIF+D G 
Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHG- 179

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                   + +EG+R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   
Sbjct: 180 ------SPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVH 233

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF  LI  S++  G      N + H++I DHLR+++FLIA+G+LP NEGR YVL
Sbjct: 234 DNYDIDLFSALISKSQEYCGRT---ENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVL 290

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAKLLIEETLRSEDERFG 359
           RR++RRA  Y  LLGY + L+  + P L     SAY   EL++AK LIE TL+SE+E F 
Sbjct: 291 RRLIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYMGAELVRAKSLIETTLKSEEENFK 350

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL +G+ LL+   + L   + L G+ AFKLYDT+G PLDI  D+L  +     D   F+
Sbjct: 351 DTLMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGFPLDITLDVLKEK-KINFDQKGFD 409

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+ RARA   G G  + E++WF L  K+G T+F+GY+                  
Sbjct: 410 DAMGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTKFVGYE------------------ 451

Query: 480 PPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     + + AIV  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I   
Sbjct: 452 ----FNEVSDAKILAIVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSD 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + I +   K   +++H  IV+ G +    ++  +ID + R+ L  NHSATHLLH  L 
Sbjct: 508 RSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFTLR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV+Q GS + PD LRFD +H+  +T  +L  +ED VN +I +NL   T+I +   
Sbjct: 568 KILGDHVTQKGSLVAPDRLRFDFSHNTQMTQDQLFWVEDMVNSLIRENLSASTKIQSMNQ 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI  GA AL G KY ++VRVV +        S  LCGGTHV  TGEI L  IV+ESS+  
Sbjct: 628 AIDEGAMALFGEKYGNQVRVVKIGD------SRELCGGTHVEHTGEIGLFKIVTESSVAF 681

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TGQ A +++   +  LK +A F+K     +  R+  + +E++K +       
Sbjct: 682 GVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEITSRLSILSQEHKKSETKIKNLY 741

Query: 779 LQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            +L + E++   +I  +NF+SH  +++ +  ++  +  LQ++    +I      K+ K  
Sbjct: 742 KKLVSAENIKSTEINGINFISHTFTDIPANVIREFV--LQQQKPKTVIAFTATEKD-KTV 798

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++I V++DL+++ +A +L  ++ K       GG   +AQ  G + NK D AI  + S +
Sbjct: 799 LIIKVSKDLINKISAKELISIAVK----KNCGGNAELAQ-TGCDSNKIDDAITAIYSKI 852


>gi|99036095|ref|ZP_01315128.1| hypothetical protein Wendoof_01000018 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 877

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/899 (44%), Positives = 556/899 (61%), Gaps = 51/899 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F++FF  N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +  
Sbjct: 1   MKLNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE  LD
Sbjct: 61  VSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL ITVY  D+EA+++W+KISG S+DKIIRITT+DNFWSM  TGPCGPCSEIF+D G 
Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHG- 179

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                   + +EG+R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   
Sbjct: 180 ------SPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVH 233

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF  LI  S++  G      N + H++I DHLR+++FLIA+G+LP NEGR YVL
Sbjct: 234 DNYDIDLFSALISKSQEYCGRT---ENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVL 290

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAKLLIEETLRSEDERFG 359
           RR++RRA  Y  LLGY + L+  + P L     SAY   EL++AK LIE TL+SE+E F 
Sbjct: 291 RRLIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYMGAELVRAKSLIETTLKSEEENFK 350

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL +G+ LL+   + L   + L G+ AFKLYDT+G PLDI  DIL  +     D   F+
Sbjct: 351 DTLMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGFPLDITLDILKEK-KINFDQKGFD 409

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+ RARA   G G  + E++WF L  K+G T+F+GY+                  
Sbjct: 410 DAMGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTKFVGYE------------------ 451

Query: 480 PPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     + + AIV  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I   
Sbjct: 452 ----FNEVSDAKILAIVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSD 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + I +   K   +++H  IV+ G +    ++  +ID + R+ L  NHSATHLLH  L 
Sbjct: 508 RSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFTLR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV+Q GS + PD LRFD +H+  +T  +L  +ED VN +I +NL   T+I +   
Sbjct: 568 KILGDHVTQKGSLVAPDRLRFDFSHNTQMTQDQLFWVEDMVNSLIRENLSASTKIQSMNQ 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI  GA AL G KY ++VRVV +        S  LCGGTHV  TGEI L  IV+ESS+  
Sbjct: 628 AIDEGAMALFGEKYGNQVRVVKIGD------SRELCGGTHVEHTGEIGLFKIVTESSVAF 681

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TGQ A +++   +  LK +A F+K     +  R+  + +E++K +       
Sbjct: 682 GVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEITSRLSILSQEHKKSETKIKNLY 741

Query: 779 LQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            +L + E++   +I  +NF+SH  +++ +  ++  +  LQ++    +I      K+ K  
Sbjct: 742 KKLVSAENIKSTEINGINFISHTFTDIPANVIREFV--LQQQKPKTVIAFTATEKD-KTV 798

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++I V++DL+++ +A +L  ++ K       GG   +AQ  G + NK D AI  + S +
Sbjct: 799 LIIKVSKDLINKISAKELISIAVK----KNCGGNAELAQ-TGCDSNKIDDAITAIYSKI 852


>gi|323692006|ref|ZP_08106254.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14673]
 gi|323503929|gb|EGB19743.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14673]
          Length = 879

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/907 (37%), Positives = 509/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P    VTT
Sbjct: 6   VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRNRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF +W K  G+  ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLEDDEAFDIWNKEMGIPKERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RYIE+WN VF QF          L   +IDTGMGLER+A V+QE  
Sbjct: 181 GCGSPDCTVGCECDRYIEVWNNVFTQFNNDGHGNYTELEHKNIDTGMGLERLAVVVQEVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + + +D  K L+    ++   KY+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGY
Sbjct: 241 SLFTVDTNKALLDRVCELAHTKYQEDHETDVSLRIVADHIKSCTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + + LG     M  L   +       YPEL +   +I + L  E+++F 
Sbjct: 301 VLRRLLRRAARHGKKLGIEGKFMAELSKTVIALSKDGYPELEEKSAMIFKVLSEEEDKFN 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + +    + +L+GD AFKLYDT+G P+D+ ++IL  + L+ +D   
Sbjct: 361 KTIDQGLAILADMETEMAKNNETVLSGDNAFKLYDTYGFPIDLTREILEEKNLS-LDEDG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A+++Q+ +ARA          +   +   +    T+F GY  L              
Sbjct: 420 FTAAMKKQKEQARAARKTTNYMGADVTVYQSIDPAVTTEFDGYGKL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + EIVE    GQ   ++  +TPFYA  GGQ  D G     
Sbjct: 466 ---------AEESEITVLTTETEIVEALTDGQAGTIIVKKTPFYATMGGQQADVGVITAQ 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + D  K   G   H   V +G+ +T  ++ L +D +NR     NHSATHLLH AL
Sbjct: 517 DAEFTVKDTIKLQGGKVGHVGYVTKGMFKTGDTVTLKVDKENRELTERNHSATHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG+HV Q GS +T D LRFD TH   +T  E+ ++E  VND IA  LPV T +M  +
Sbjct: 577 RTVLGTHVEQAGSLVTKDRLRFDFTHFSAMTDEEIAAVEKLVNDEIAAALPVETMVMTLD 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV +     G  S+ LCGGTHV +T  I    IVSE+ I 
Sbjct: 637 EAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVDNTSSISAFKIVSEAGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T     ++    +++L   A  +K +   +  ++E + +E + L   + K 
Sbjct: 692 AGVRRIEALTSTGLMNYYKEMEKELHEAARVVKSTPSGLTAKLESMLDEIKALHSENEKL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + L        ++  V  ++  + +VD   L+++ D L++K+  G++++  + +
Sbjct: 752 KSKLANDSLGDVMNQVQEVNGVKLLAVQVKDVDMNGLRNLGDQLKEKLGEGVVVIASV-Q 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++  VT +   +  +A +L +  A ++GGGG GGRP+MAQ+GG N      A+  
Sbjct: 811 DGKVNLMASVTGEAQKKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPAGIPDALKK 869

Query: 892 VASFLKK 898
            A  +++
Sbjct: 870 AAETVRE 876


>gi|16331117|ref|NP_441845.1| alanyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|2500959|sp|P74423|SYA_SYNY3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1653611|dbj|BAA18523.1| alanyl-tRNA synthetase [Synechocystis sp. PCC 6803]
          Length = 877

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/901 (38%), Positives = 512/901 (56%), Gaps = 50/901 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FL FF    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+   +   TT Q
Sbjct: 12  EIRQQFLNFFADRQHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKSAEFPRATTSQ 70

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI  AW+L T+ F L   RL
Sbjct: 71  KCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKSQAIAWAWELSTQVFKLPAERL 126

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++V++ED+EAF +W+   G+ A +I R+  +DNFW    TGPCGPCSEI++D    + G
Sbjct: 127 VVSVFEEDDEAFAIWRDEIGIPAHRIQRMGADDNFWVSGPTGPCGPCSEIYYDFHPEL-G 185

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                 E+  R+IE +NLVFMQ+ + N      L K +IDTGMGLERMA +LQ+  NNY+
Sbjct: 186 DEKLDLEDDSRFIEFYNLVFMQYNRDNAGNLTPLEKKNIDTGMGLERMAQILQKVPNNYE 245

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   +IQ +  + G+ Y   N     + +VI DH+RS   +IADGI  +N GRGYVLR
Sbjct: 246 TDLIFPIIQTAANIAGIDYAQANEKTKVSLKVIGDHVRSVVHMIADGISASNLGRGYVLR 305

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RLLG        +           YP +++ + LIE+ L+ E+  F KTL
Sbjct: 306 RLIRRVVRHGRLLGINGEFTTKVAATAVQLAQPVYPNVLERQSLIEQELQREEAAFLKTL 365

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL  +++    +  + G  AF LYDT G PL++ Q+I   +G+  +D+  F +A+
Sbjct: 366 ERGEKLLADLMADGVTE--IAGADAFTLYDTFGFPLELTQEIAEEQGIT-VDVEGFEKAM 422

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           +EQ+ R++A    +     E +   L      T+F+GY  L+                  
Sbjct: 423 QEQQERSKAAHETIDLTVQESLD-KLANHIHPTEFLGYTDLQS----------------- 464

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S+IVKA++  GE+V++AV+GQ V++V DQTPFY E+GGQ+GD G   GD + ++
Sbjct: 465 ------SAIVKAVLVGGELVDQAVAGQTVQIVLDQTPFYGESGGQIGDKGFLNGDNLLIR 518

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           I DV K+  GIF+H   VERG ++   ++  TID   RR+   NH+ATHLL  AL  ++ 
Sbjct: 519 IEDV-KRESGIFIHFGRVERGTVQIGTTITATIDRACRRRAQANHTATHLLQSALKRVVD 577

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
             +SQ GS +  + LRFD    + +T  EL+ IED +N  IA+       +M   DA A 
Sbjct: 578 EGISQAGSLVDFNRLRFDFNSPRAVTMEELQQIEDLINQWIAEAHQTEVAVMPIADAKAK 637

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+ G KY   VRV+ V        S  LCGGTHV++T EI L  IV+E+ I AG+RR
Sbjct: 638 GAIAMFGEKYGAEVRVIDVPG-----VSLELCGGTHVANTAEIGLFKIVAETGIAAGVRR 692

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G     +L  ++  +K L   LK     +  RV ++ +E +  Q      K +L 
Sbjct: 693 IEAVAGPSVLDYLNVREAVVKELGDRLKAKPEEIPDRVHQLQQELKASQKQLEALKQELA 752

Query: 783 VEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           ++           + +   +   +  VD + LK+  + LQ+K+    ++L  I +E K S
Sbjct: 753 LQKSEQLLTQAQTVGEFKILVADLGTVDGESLKTAAERLQQKLGESAVVLASIPEEGKVS 812

Query: 838 VLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           ++   +  L    +  A       AK+ GGGG GGRP++AQ+GG + +K  +A+A     
Sbjct: 813 LVAAFSPQLVKTKQLKAGQFIGAIAKICGGGG-GGRPNLAQAGGRDASKLPEALATAKQT 871

Query: 896 L 896
           L
Sbjct: 872 L 872


>gi|262066712|ref|ZP_06026324.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291379511|gb|EFE87029.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 867

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/909 (36%), Positives = 511/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++  Y  
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA ++W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K NN++ DL   +++ + ++TG +Y        + +VI DH R+ +FL+ DG++P+NE
Sbjct: 236 QGKPNNFETDLLFPILEEAARITGSQYGKNSETNFSLKVITDHARAVTFLVNDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +      AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVTVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +K+G T+F GY+ ++    +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYENIQDEAKLLSSR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGR 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DV +K + IF+H   +E+G      +  L ++   R   + NH+ATHLL
Sbjct: 504 IYSDDFSAKVLDV-QKQKDIFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + PD LRFD +H + +T+ +L  IE+ VN+ I + + VV   
Sbjct: 563 HKALREVVGTHVQQAGSLVDPDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIEVVVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY + VRVV V        S+ LCGGTH+ +  +I L  IVSE
Sbjct: 623 HSIEEAKNLGAMMLFGDKYGEVVRVVDVPG-----FSTELCGGTHIDNIAKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      + + LK +   LK S  NVV +VE+  E  ++ +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKETERE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K ++ + +         +I  V  +     +  +++L++++D ++   +  +++L 
Sbjct: 738 LETLKQKIALFETKAALSGMEEINGVKVLVAAFKDKKAEDLRTMIDTIKDNNEKAVVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K S  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG + +K   A
Sbjct: 798 STQ--DKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESKLLDA 854

Query: 889 IAGVASFLK 897
              + + ++
Sbjct: 855 FKEIRATIE 863


>gi|291485146|dbj|BAI86221.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
          Length = 878

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/915 (37%), Positives = 520/915 (56%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRIVNAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +TV+ EDEEA++ W K  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q    N+D DLF  +I+A+E ++G  Y  +N      +VI DH+R+ +F ++DG 
Sbjct: 234 MVSVIQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ +    I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  ++         +++G   FKLYDT+G P+++ ++     
Sbjct: 354 IKTEEERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F + + +QR RAR     +GS   +    +L++    + F+GY   +    
Sbjct: 414 NMT-VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQTKAD-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  ++Q G+++EEA  G+ V+++ D+TPFYAE+GGQ+
Sbjct: 469 ---------------------ANIIVLLQDGQLIEEAYEGESVQIILDETPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +   ++I DVQK   G  VH  +VE G ++  + +   ++   R  +  NH+
Sbjct: 508 GDKGYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++P
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VSIDLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TGQ A   +  Q   LK  A  LK +   V  RV  +  E +
Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           + Q  +     +L   +         ++  VN ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 EAQRENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  + K ++   VT+DL+++  +A  L + +A+V GGGG GGRP MAQ+GG   
Sbjct: 803 VIVLGAVQND-KVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGG-GGRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            K ++A+A V  ++K
Sbjct: 861 EKLEEALASVEDWVK 875


>gi|260494135|ref|ZP_05814266.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260198281|gb|EEW95797.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 867

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/909 (36%), Positives = 509/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y        + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGMQLVNQEIDNLLTNGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVTVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYEKTEDEGKLLSLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DV +K + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFIGKVLDV-QKQKDIFIHTVEFEKGIAEENKTYKLEVDIVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGIEVNISH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  IVSE
Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG+RRIEA TG  A      + + LK +   LK +  N++ +VE+  E  +  +  
Sbjct: 678 SGIAAGVRRIEAKTGYGAYLVEKTEADILKDIEKKLKATNSNLIEKVEKTLETLKDTEKE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I     +     +  +++L++++D ++ + +  II+L 
Sbjct: 738 LEALKQKLALFETKAAISGMEEIGGAKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVREIIE 863


>gi|331002247|ref|ZP_08325766.1| alanyl-tRNA synthetase 1 [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330411341|gb|EGG90757.1| alanyl-tRNA synthetase 1 [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 885

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/908 (37%), Positives = 517/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             V+ IR  FL+FF++ GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + V
Sbjct: 10  KGVNRIRKKFLDFFEEKGHLSMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRV 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD
Sbjct: 70  CTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVAGLD 125

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY +VY ED+EAF++W K  G+ A++I +    DNFW   E GPCGPCSE+++D+GE
Sbjct: 126 ANRLYPSVYLEDDEAFEIWNKEIGIPAERIFKFGKEDNFWEHGE-GPCGPCSEVYYDRGE 184

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+E+WN VF QF    K     L + +IDTGMGLER+A  LQ+
Sbjct: 185 KYGCGKPSCTVGCDCDRYMEVWNNVFSQFNSDGKGNYTELVQKNIDTGMGLERLAVALQD 244

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +++D  K L+     +    Y+ +    ++ R+I DH+RS +F+I+DGI+P+NEGR
Sbjct: 245 VESIFEVDTIKSLLDRVAALAKTSYKEDAKKDISLRLITDHIRSCTFMISDGIMPSNEGR 304

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  +  +  L   +       YPEL + K +I + L  E+ +
Sbjct: 305 GYVLRRLLRRAARHGRMLGIKDTFLASLANTVIELSKDGYPELEEKKEMILKVLTEEENK 364

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT+D+GL +L  +  +L K  +++++G+ AF+LYDT+G PLD+ ++I+  +G   +D 
Sbjct: 365 FDKTIDQGLSILSEIEENLTKSGEKVISGEDAFRLYDTYGFPLDLTKEIIEEKGFT-VDE 423

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+A+E QR++ARA          +   +   +    + F GYD L            
Sbjct: 424 AGFNKAMEAQRNQARAARKATNYMGADVTIYQSLDPKLTSVFEGYDSLLD---------- 473

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        +  + A+  + EIVE    G    ++ D+T FYA  GGQ  D G   
Sbjct: 474 -------------TGKITALTTEDEIVEAIAEGDHGTIILDKTSFYATMGGQNADIGLIK 520

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D     + DV K +     H   V +G+ +   ++   +D  NR++ + NHSATHLLH 
Sbjct: 521 KDDAVFNVVDVIKLSGDKIGHVGFVTKGMFKLGDTVETVVDADNRKKTAANHSATHLLHK 580

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS +  D LRFD TH K +T  E+ ++E+ VN  I + LPVVT +MN
Sbjct: 581 ALREVLGNHVEQAGSYVAADRLRFDFTHFKSLTKEEIANVEEIVNAEINKALPVVTDVMN 640

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            EDA  SGA AL G KY   VRVVS+     G  S  LCGGTHV +T +I L  ++SE+ 
Sbjct: 641 VEDAKKSGAMALFGEKYRGDVRVVSM-----GDFSKELCGGTHVHNTADIKLFKVLSENG 695

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG+         + +++ +A  LK  +  ++ + E + +E + L+  + 
Sbjct: 696 IAAGVRRIEALTGEGVIEFYQDIESRMQKMAELLKTGEAELITKAESLLDEMKTLKSENE 755

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K K +L  E L     +   I  V F++  +S V+  EL+++ D L+  +  G+++L   
Sbjct: 756 KLKAKLASEALGDSAENIETINGVKFIAMQVSGVEMNELRNLGDKLKNDVDDGMVVLAS- 814

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K ++L +  ++ L    +A ++ +  A ++GGGG GGRP++AQ+GG N      A+
Sbjct: 815 DVDGKVNLLCMAGDNALKAGAHAGNIIKAIATLVGGGG-GGRPNIAQAGGKNPAGIKDAL 873

Query: 890 AGVASFLK 897
                  K
Sbjct: 874 DKAKEEFK 881


>gi|158320695|ref|YP_001513202.1| alanyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|205829976|sp|A8MGI3|SYA_ALKOO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158140894|gb|ABW19206.1| alanyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 880

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/910 (38%), Positives = 520/910 (57%), Gaps = 50/910 (5%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FLEFF+   H + PS+ L+P  D +L+  NSGM P K  F G E+P  
Sbjct: 1   MKKLGVNEIRKEFLEFFRSKEHIIHPSAPLVPQKDKSLLLINSGMAPLKPYFAGLEEPPG 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + + T QKC+R G    D++NVGRT RH TFFEMLGNFSFG YFK+ ++   W+ +TK  
Sbjct: 61  KRMATCQKCIRTG----DIENVGRTARHATFFEMLGNFSFGDYFKKESLTWGWEFVTKNL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L   +L+ TVY +D+EAF++W K  GL  ++I+R+   DNFW +   GPCGPCSEI+FD
Sbjct: 117 ELPVDKLWATVYVDDDEAFEIWNKQIGLPEERIVRLGKADNFWEIG-LGPCGPCSEIYFD 175

Query: 179 QGECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G        E +RY+E WN VF QF++  +     LP  +IDTGMGLERMA +
Sbjct: 176 RGEDYGCGCEECKPGCECDRYVEFWNHVFTQFDRDEEGNYHPLPNPNIDTGMGLERMACI 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   + +DID  + ++ +  ++T  +Y+ +    V+ R+I DH+RS S +I DGILP+N
Sbjct: 236 MQGVDSIFDIDTMQDILNSVCKITSSEYKKDERTDVSIRIITDHVRSISLMIGDGILPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + +LLG     +  L+  +    G  Y EL+  K  I+  ++ E
Sbjct: 296 EGRGYVLRRLLRRAARHGKLLGVNRAFLYELVDRVADNYGETYVELVDNKDYIKRVIKVE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T+D+G+ +L+  +  L   K+ +L+G  AFKLYDT+G P D+ ++IL  +GL+ 
Sbjct: 356 EERFMETIDQGMDILNQYIEELVTLKETVLSGVNAFKLYDTYGFPFDLTKEILEEKGLS- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   +E+QR RAR   +G  +   ++  FS  +K   T F GY            
Sbjct: 415 LDETGFESEMEKQRQRARDARIGADTEGWKEDIFSGLDKEIQTAFKGYTNFE-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          V   V AIV    +VE+   G++  V+ D+T FY E GGQ+GD G
Sbjct: 467 ---------------VEGKVLAIVSNDTVVEQCDKGKEATVILDETAFYGEGGGQVGDIG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               + +RL + D +K       H   VE G ++    +   +D   R   + NH+ATHL
Sbjct: 512 TLYNEAVRLSVLDTKKGPHNQVHHVVRVEEGTIKIGDEVKAKVDMVTRMSTARNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  I+G HV Q GS +TPD LRFD TH + +T  ++  IE+ VN  I   L V T 
Sbjct: 572 LHKALRDIVGEHVHQAGSLVTPDRLRFDFTHFEGLTKDQITQIEEKVNQQILMALDVRTF 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             + EDA   GA AL G KY D VRVV V     G +S+ LCGGTHV+++GEI +  ++S
Sbjct: 632 ETSIEDAKKIGAQALFGEKYGDVVRVVKV-----GEYSTELCGGTHVTNSGEIGMFIMLS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG+RRIEAITG  A  ++    + ++ +A  LK    NVV RV ++  E ++   
Sbjct: 687 EAGVAAGVRRIEAITGMEAYKYVQKNQKTIQEIADTLKTQVQNVVERVADLVHETKEKDR 746

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K QL              +  +N +  ++   +  +L+ + D L++KI SG+I+L
Sbjct: 747 EINKLKSQLASNSTGDILDKATVVGGINVVVEVLENQEMDDLRKIGDVLKEKIGSGVIVL 806

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              +++ K + + + T+D +    +A +L + +AK+ GGGG GGRP MAQ+GG N  K  
Sbjct: 807 GSSNQD-KVNFVAMATKDAVSKGVHAGNLVKEAAKIAGGGG-GGRPDMAQAGGKNPQKIQ 864

Query: 887 QAIAGVASFL 896
           +A+  V   L
Sbjct: 865 EALDTVKEIL 874


>gi|294783331|ref|ZP_06748655.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294480209|gb|EFG27986.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 867

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++  Y  
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA ++W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K NN++ DL   +++ + ++TG +Y        + +VI DH R+ +FL+ DG++P+NE
Sbjct: 236 QGKPNNFETDLLFPILEEAARITGSQYGKSSETNFSLKVITDHARAVTFLVNDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +      AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+V+FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEVSFKLYDTYGFPYELTEEIAEERGVTVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +K+G T+F GY+       +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYEKTEDEATLLSSR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGR 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DV +K + IF+H   +E+G      +  L ++   R   + NH+ATHLL
Sbjct: 504 IYSDNFSAKVLDV-QKQKDIFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS +  D LRFD +H + +T+ +L  IE+ VN+ I + + VV   
Sbjct: 563 HKALREVVGTHVQQAGSLVDSDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIDVVVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY + VRVV V        S+ LCGGTH+ +  +I L  IVSE
Sbjct: 623 HSIEEAKNLGAMMLFGDKYGEVVRVVDVPG-----FSTELCGGTHIDNIAKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      + + LK +   LK S  NVV +VE+  E  +  +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKDTEKS 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K ++ + +         +I     +     +  + +L++++D ++   +  I++L 
Sbjct: 738 LETLKQKIALFETKAALSGMEEINGAKVLIATFKDKTADDLRTMIDTIKDNNEKAIVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K S  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG + +K   A
Sbjct: 798 STQ--DKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESKLLDA 854

Query: 889 IAGVASFLK 897
           +  + + ++
Sbjct: 855 LKEIRATIE 863


>gi|196250079|ref|ZP_03148773.1| alanyl-tRNA synthetase [Geobacillus sp. G11MC16]
 gi|196210263|gb|EDY05028.1| alanyl-tRNA synthetase [Geobacillus sp. G11MC16]
          Length = 878

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/915 (39%), Positives = 523/915 (57%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTSAEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL +TV+ EDEEA+ +W+   GL  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++LQ+   N++ DLF  +I+A+EQ+ G +Y  + N  V  +VI DH+R+ +F + DG 
Sbjct: 234 MCSILQDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL  GL +L  V+    K    ++ G+ AF+LYDT+G PL++ ++     
Sbjct: 354 IRTEEERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G++ +D   F + +E QR RARA    + S   +     L +    ++F+GYD L     
Sbjct: 414 GMS-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKDESRFVGYDEL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              VSS V AI++ G+ VEE  +G++ +++ D TPFYAE+GGQ+
Sbjct: 466 ------------------VVSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G+     + DVQK   G  +H  +VERG ++        +D   R Q+  NH+
Sbjct: 508 ADQGVFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I +++P
Sbjct: 568 ATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E R
Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELR 742

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +LQ  +     +L   +         ++  V  ++  +   D  +L+++ D L++K+ + 
Sbjct: 743 QLQRENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  + +  K  ++  VT+DL+ + ++A  L +  A   GGGG GGRP MAQ+GG + 
Sbjct: 803 VIVLAAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKDA 860

Query: 883 NKADQAIAGVASFLK 897
           NK  +A+  V +++K
Sbjct: 861 NKVGEALDYVETWVK 875


>gi|327439562|dbj|BAK15927.1| alanyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 890

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/924 (36%), Positives = 507/924 (54%), Gaps = 69/924 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L FF++ GH + PS+ L+P NDP+L++ NSG+   K  F G+  P    +
Sbjct: 6   MTGSEIRRLYLNFFKEKGHHIEPSAPLVPINDPSLLWINSGVATLKPYFDGRIIPDNPRI 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ +I  AW+ LT  K   
Sbjct: 66  TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKESIHYAWEFLTDPKWMG 121

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L +T++ ED+EA+ +W    G+  +++IR+    NFW + E GP GP SEIF+D+
Sbjct: 122 FDPEKLSVTIHPEDQEAYDVWHNEIGIPKERLIRL--EGNFWDIGE-GPSGPNSEIFYDR 178

Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           GE    G P     +  E ERY+EIWNLVF QF          LPK +IDTGMGLER+ +
Sbjct: 179 GEEYGVGAPEEEMYTGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVS 238

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRS 281
           V+Q    N+D DLF  +I+ +E      Y+  + V+               +VI DH+R+
Sbjct: 239 VVQNVPTNFDTDLFMPIIEKTETFANRTYKRPHEVDLNEIFGSTEDVNTPFKVIADHIRT 298

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G  +P M  L+P +   M   YP++ 
Sbjct: 299 VAFAIGDGALPSNEGRGYVLRRLLRRAVRYAKKIGIEKPFMFELVPTVGEIMHDFYPQVK 358

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399
           + +  I+  +++E+ RF +TLD GL + + V        + ++ G  AF+LYDT G P++
Sbjct: 359 EKEAFIQRVIKNEEVRFHETLDGGLAIFNEVAESQKAKGETVIPGADAFRLYDTFGFPIE 418

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + ++     G+  +D   F  ++E+QR RAR     + S   +     L      + FI 
Sbjct: 419 LTEEYAEEVGMT-VDQEGFEASMEQQRERARNARADVDSMQVQNEV--LSNLTQQSTFI- 474

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L                         S+ V AIV  G+    A  G++  V+  +TP
Sbjct: 475 YDALE-----------------------ASAKVAAIVVNGQETSTASEGEEALVILSETP 511

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE GGQ+ DTG    DG    + DVQK   G  +H  +VE G +         ++   
Sbjct: 512 FYAEMGGQIADTGIIKADGFTAIVKDVQKAPNGQPLHTVVVESGEMNVGDIATAKVEEAK 571

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ +  NH+ATHL+H AL  +LG HV+Q GS + PD LRFD +H    T  EL  +E  V
Sbjct: 572 RKLILKNHTATHLMHRALKDVLGDHVAQAGSYVGPDRLRFDFSHFGAATKEELAQVERAV 631

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ I +++ VV + M+ + A A GA AL G KY D VRVV+V       +S  LCGG HV
Sbjct: 632 NEKIWEDIEVVIQEMDIDSAKAMGAMALFGEKYGDVVRVVAV-----SDYSIELCGGLHV 686

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S + EI +  IVSES I AG RRIEA+TG+ A   +  ++  L   A  LK +  +V  R
Sbjct: 687 SRSSEIGIFKIVSESGIGAGTRRIEAVTGKAAYEAIKEEEAILNEAAGLLKSNAKDVATR 746

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMD 814
           V  +  +Y++LQ  +     ++          +  KI DV  ++  +   D+ +L+ +MD
Sbjct: 747 VATLQADYKELQRENDSLSQKIANAQAGAVLDAAQKIGDVTVLATRVEAKDNNQLRQMMD 806

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
            L++K++S +I+L  +  + K  +   VT+D++   ++A ++ +  A+   GG GGGRP 
Sbjct: 807 DLKEKMESAVIVLGAVDGD-KVMLCAGVTKDIVGGNYHAGNIVKQVAEAC-GGKGGGRPD 864

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MA +G  + +K + A+  V   +K
Sbjct: 865 MAMAGAKDASKLEDALNAVYEHVK 888


>gi|321312266|ref|YP_004204553.1| alanyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|320018540|gb|ADV93526.1| alanyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 878

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/915 (37%), Positives = 519/915 (56%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRIVNAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +TV+ EDEEA++ W K  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q    N+D DLF  +I+A+E ++G  Y  +N      +VI DH+R+ +F ++DG 
Sbjct: 234 MVSVIQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ +    I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  ++         +++G   FKLYDT+G P+++ ++     
Sbjct: 354 IKTEEERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F + + +QR RAR     +GS   +    +L++    + F+GY   +    
Sbjct: 414 NMT-VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQTQAD-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  ++Q G+++EEA  G+ V+++ D+TPFYAE+GGQ+
Sbjct: 469 ---------------------ANIIVLLQDGQLIEEAHEGESVQIILDETPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +   ++I DVQK   G  VH  +VE G ++  + +   ++   R  +  NH+
Sbjct: 508 GDKGYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++P
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VSIDLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TGQ A   +  Q   LK  A  LK +   V  RV  +  E +
Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             Q  +     +L   +         ++  VN ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 DAQRENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  + K ++   VT+DL+++  +A  L + +A+V GGGG GGRP MAQ+GG   
Sbjct: 803 VIVLGAVQND-KVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGG-GGRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            K ++A+A V  ++K
Sbjct: 861 EKLEEALASVEDWVK 875


>gi|289434784|ref|YP_003464656.1| hypothetical protein lse_1419 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171028|emb|CBH27570.1| alaS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 879

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/916 (37%), Positives = 516/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  +W++  GL+ + I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWREKIGLTDEHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDENDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ++G+KY  E  N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++++ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSTFVGYNTTEYV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V+E  +G + +++F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYIIQNDALVDEVAAGSEAQLIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H  +V+ G+L T  ++ L+++   RR+   NH+
Sbjct: 508 ADKGTIQSETGLAYVEDVQKAPNKQNIHRVVVKEGVLTTGDTVKLSVNKVKRRETVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN  I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNKKIWEQIA 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      ++E +  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKAAYHFVTEQENTLKHAANLLKTTTKETPQKIELLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  VN ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVRRENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGSALDYVSTWVKE 876


>gi|239827827|ref|YP_002950451.1| alanyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|239808120|gb|ACS25185.1| alanyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 877

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/915 (38%), Positives = 519/915 (56%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTSAQVRKMFLDFFKEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL +T++ ED+EAF++W K  GL  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPDRLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEEFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++LQ    N++ DLF  +I+A+EQ++G KY  +    V  +VI DH+R+ +F I DG 
Sbjct: 234 MCSILQGVPTNFETDLFMPIIRATEQISGEKYGVDKEKDVAFKVIADHIRAVTFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+ +    I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQLHIERPFMYELVPVVGEIMNDFYPEVKEKAAFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL  GL +L  V+         I++G+  F+LYDT+G P+++ ++     
Sbjct: 354 IKNEEERFHETLHEGLAILASVIQKEKERGSNIISGEDVFRLYDTYGFPVELTEEYAHEE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F + +E QR RARA    + S   +     L +    ++F+GYD L     
Sbjct: 414 GME-VDHDGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKTESEFVGYDQL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S V  IV+ G++V E   G++ +++ D TPFYAE+GGQ+
Sbjct: 466 ------------------HAQSTVAVIVKDGQLVNEVKEGEEAQIILDVTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +  +  + DVQK   G  +HH IVE+G LR   +    ID   R  +  NH+
Sbjct: 508 ADQGWIENETTKAFVKDVQKAPNGQHLHHIIVEKGTLRKGETYTAQIDEAKRASIIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + PD LRFD +H   +   EL+ IE  VN+ I +++P
Sbjct: 568 ATHLLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V        +A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VEIFYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+ +A  LK +   +V R++ +  E R
Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMNEQITLLQEVAQKLKTNPKEIVNRIDALMNEIR 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +LQ  +     +L   +         ++  +  ++  ++  D   L++++D L++K+ S 
Sbjct: 743 QLQRENESLAARLGNMEAANLVNKVKEVNGIPVLASKVNANDMNHLRTMVDELKQKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           II+L  +  E K +++  +T DL+++ ++A  L +  A   GGGG GGR  MAQ+GG + 
Sbjct: 803 IIVLAAVQGE-KVNLIAGITNDLIEKGYHAGKLIKEVAVRCGGGG-GGRADMAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
           +K  +A+  V  ++K
Sbjct: 861 SKVGEALQYVEQWIK 875


>gi|152976803|ref|YP_001376320.1| alanyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|205829984|sp|A7GT67|SYA_BACCN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152025555|gb|ABS23325.1| alanyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 880

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFKEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWHEKIGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDPSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q    N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQNVPTNFDTDLFMPMIGATESISGEKYRSGDAEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYAKKLNMNRPFMYELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPVELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHAGFEAEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D+G  + DG+++ + DVQK   G  +H  +VE G+L  + ++   ID +NR  +  NH
Sbjct: 508 IADSGYLLTDGVKVLVKDVQKAPNGQNLHKVVVEEGVLTKDATVKAVIDTKNRSSIVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTAERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKAAYELMNDQVSLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      +   +  +N ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDAVVSVDGINVLATKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +I+L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVIVLAAV-NDDKVNILAGVTKDLVGQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + D+A+A V  ++K
Sbjct: 861 PAQVDEALAFVQEYVK 876


>gi|16079794|ref|NP_390618.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310677|ref|ZP_03592524.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315000|ref|ZP_03596805.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221319921|ref|ZP_03601215.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324202|ref|ZP_03605496.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|3122886|sp|O34526|SYA_BACSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2635186|emb|CAB14682.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 878

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/915 (37%), Positives = 519/915 (56%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRIVNAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +TV+ EDEEA++ W K  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q    N+D DLF  +I+A+E ++G  Y  +N      +VI DH+R+ +F ++DG 
Sbjct: 234 MVSVIQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ +    I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  ++         +++G   FKLYDT+G P+++ ++     
Sbjct: 354 IKTEEERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F + + +QR RAR     +GS   +    +L++    + F+GY   +    
Sbjct: 414 NMT-VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTVESTFVGYSQTKAD-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  ++Q G+++EEA  G+ V+++ D+TPFYAE+GGQ+
Sbjct: 469 ---------------------ANIIVLLQDGQLIEEAHEGESVQIILDETPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +   ++I DVQK   G  VH  +VE G ++  + +   ++   R  +  NH+
Sbjct: 508 GDKGYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++P
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VSIDLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TGQ A   +  Q   LK  A  LK +   V  RV  +  E +
Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             Q  +     +L   +         ++  VN ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 DAQRENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  + K ++   VT+DL+++  +A  L + +A+V GGGG GGRP MAQ+GG   
Sbjct: 803 VIVLGAVQND-KVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGG-GGRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            K ++A+A V  ++K
Sbjct: 861 EKLEEALASVEDWVK 875


>gi|28210757|ref|NP_781701.1| alanyl-tRNA synthetase [Clostridium tetani E88]
 gi|41018208|sp|Q896F2|SYA_CLOTE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28203195|gb|AAO35638.1| alanyl-tRNA synthetase [Clostridium tetani E88]
          Length = 879

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/907 (37%), Positives = 521/907 (57%), Gaps = 48/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L FF+  GH  + S SL+P ND +L+  N+GM P K  FTG + P    V
Sbjct: 4   MGLNEIREAYLNFFEGKGHLRMESFSLVPKNDKSLLLINAGMAPLKPYFTGVQTPPKSRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +TK  ++ 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKCEVIPWAWEFVTKSLNIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-G 180
           + +LY+T+Y +D+EA+ +W K + +   +I R+   DNFW + + GPCGPCSEI + + G
Sbjct: 120 KDKLYVTIYLDDDEAYDIWTKSTDIDPSRIFRLGKEDNFWEIGQ-GPCGPCSEIHYQREG 178

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I        + + +  IE WNLVF QF++   +    L   +IDTGMGLERMAT++Q 
Sbjct: 179 EKINSVEEFIKKSDDDEVIEFWNLVFTQFDKDENENYNRLAHPNIDTGMGLERMATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +++D  K ++    ++  +KY       ++ RVI DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VNSIFEVDTIKAVLDEISEIANIKYGENKEKDISLRVITDHVRSVTFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG     +  +   +      AY EL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRASRHGKLLGIKGNFLYKVCKVVIENSHKAYKELKEKEEYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  L    +++L GD AFKLYDT+G P+++ ++IL  +    ID 
Sbjct: 359 FAETIDGGIQILNEYVDELINKGEKVLPGDKAFKLYDTYGFPIELTKEILEEKS-IDIDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + +E Q+ RARA         +E    +       T+F+GY  L            
Sbjct: 418 GGFTKEMEAQKQRARAAREETNYMGSEDTIINKLPIELQTEFLGYSEL------------ 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V + + AI++  E+VEE   G K  ++ D+TPFY+E GGQ+GDTG   
Sbjct: 466 -----------SVEAKIIAIIKGEELVEELKQGDKGIIIVDKTPFYSEKGGQIGDTGILA 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G  ++++I D +    G  +H   +  G ++ + ++ LT+D   R  +  NHSATHLLH 
Sbjct: 515 GKNVKVKIQDCRNNISGKILHFVEILEGSIKLQDTVNLTVDRLRRDAIRKNHSATHLLHE 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  I+G+H+ Q GS +    LRFD  H   +T  ELK++E  VN  I + +PV T++MN
Sbjct: 575 ALKKIVGAHIEQAGSFVDEHRLRFDFNHFSSLTKEELKNVEKLVNKKIMEVIPVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  SGA AL   KY+++VRVVS+     G  S  LCGGTHVS++GEI L  I+SE+ 
Sbjct: 635 IEEAKESGAVALFDEKYDEKVRVVSL-----GDFSKELCGGTHVSNSGEIGLFKIISETG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIE +TG  A  ++  ++  L+ L   LK S  +++ +     EE +  +    
Sbjct: 690 VAAGVRRIEGVTGFNALKYIEEKEALLEGLCEVLKCSNKDIINKATSQIEEIKNKEKEIN 749

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +L          +  ++  +  +S ++ ++D   L+ + D L+ KIQ G+++L  +
Sbjct: 750 NLKSKLASGSQEDILKNIKEVKGIKLVSGVLKDIDGGALRDLADKLRDKIQEGLVVLASV 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   + + T++ + +  +   + +  A + GGGG GGRP MAQ+GG N  KA++AI
Sbjct: 810 -GEGKIQFVAMATKEAVAKGAHCGKIIKEVASIAGGGG-GGRPDMAQAGGKNPEKAEEAI 867

Query: 890 AGVASFL 896
           A V   L
Sbjct: 868 AKVEDIL 874


>gi|303230862|ref|ZP_07317609.1| alanine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514622|gb|EFL56617.1| alanine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 872

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/910 (37%), Positives = 500/910 (54%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +
Sbjct: 1   MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD
Sbjct: 61  TTSQKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKDAIHWAWEFLTEVIKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG 
Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ 
Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQH 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N++ DL   +I+A+ +  G+KY    N  V+ +VI DH R+ + LI+DG+LP+NEGR
Sbjct: 234 CKTNFETDLIFPIIKATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ER
Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGLFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEER 353

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID 
Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDH 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+ A++EQR RAR   +   +         LK++                        
Sbjct: 413 EGFDAAMKEQRERAREARVKEDAKVATPDITFLKDE------------------------ 448

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                 ++     +S V  + +  E ++ AV G ++ V+   TPF+AE GGQLGDTG  +
Sbjct: 449 ----ELVENEAETASSVLMLGKGSERLQTAVDGDEITVIVRTTPFHAEGGGQLGDTGFIV 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G   ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH 
Sbjct: 505 GSMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTARRAAMARNHTATHLLHA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+
Sbjct: 565 ALKRVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SES 
Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSESG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRIEAITG+ A          ++ +AS LK     V  R+ ++  E ++      
Sbjct: 680 IGSGVRRIEAITGRAALDAAKHDRLTIERIASELKTKPAQVEERLHQVLAEAKETAKELD 739

Query: 776 KRKLQLN---VEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829
           + + +++     D+   K  I DV F++  +      EL+   D    K+  SG++++  
Sbjct: 740 QIRKEVSAAGAADIVAGKVMIGDVAFVAASVKASSIDELRDFADMGLDKLDGSGVVLVGA 799

Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + +  V++D++     A ++ + +A+ + GG GGGRP MAQ+GG    K   A
Sbjct: 800 AMGDDKVNFVCKVSKDVVGKGVKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMDA 858

Query: 889 IAGVASFLKK 898
           +      +K+
Sbjct: 859 LKAAGEAVKE 868


>gi|257452890|ref|ZP_05618189.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|317059432|ref|ZP_07923917.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313685108|gb|EFS21943.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
          Length = 866

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/910 (35%), Positives = 501/910 (55%), Gaps = 58/910 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF+   H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK  AI  +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKREAIVWSWEFVTEVLGL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+  D+EA K+W +      ++I+R+  ++N+W+   TG CGPCSEI  D G
Sbjct: 116 PKDKLWVTVFTTDDEAEKIWIEDCHFPKERIVRMGESENWWAAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     RYIEIWNLVF ++ +        LPK +IDTG GLER+A ++
Sbjct: 176 PEYGGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K+NN++ DL   L++ + ++T  KY        + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKSNNFETDLLFPLVEEAGRLTNSKYHESPEKDFSLKVITDHSRAVTFLIHDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ + RLLG  E  +  ++  +  +   AYP+L      I++ ++ E+
Sbjct: 296 GRGYVLRRILRRAVRHGRLLGQKELFLYKMVKKVVDQFAIAYPDLTANLENIQKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  +    +     L+G++ FK+YDT+G P ++ ++I   RG   +
Sbjct: 356 EKFSNTLDQGIQLVNEQIEMALQAGKSSLDGEITFKMYDTYGFPYELTEEICNERG-IAV 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +K+G T+F GY        +   R
Sbjct: 415 SQEEFLAKMEEQKEKARSARAVIMEKGQDSFIEEFYDKHGVTEFTGYHSTEEKAKLLNIR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                    + ++FD+TPFY E+GGQ+GD G 
Sbjct: 475 Q-------------------------------KEDGTLLLIFDKTPFYGESGGQVGDHGS 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  + ++ DV KK + IF H   V  G         LT+D + R  +S NH+ATHLL
Sbjct: 504 ISSEAFQGKVLDV-KKQKEIFTHIVEVVSGEAEEGKEYTLTVDSKYRAAVSKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  + LRFD +H + +T  +++ +E+ VN+ I++ + V    
Sbjct: 563 HKALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIQEVEERVNEKISEAIAVEVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              E+A A GA  L G KY D VRVV V        S+ LCGG HV + G I L  IVSE
Sbjct: 623 KTMEEAKACGAMMLFGDKYGDVVRVVHVPG-----FSTELCGGIHVENIGHIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A   +      LK  A  LK     ++ +VE++ +E ++    
Sbjct: 678 GGIAAGVRRIEAKTGYEAYRFVEENIGMLKKTAKLLKTEDSLLLEKVEKVLQEEKEKARE 737

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K ++  ++         +IADV        +    +L+ ++D ++ K ++ I++L 
Sbjct: 738 ITSLKDKIAKQEAEALYTHALEIADVKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              +  K S  + V++ L  ++ A +L +++A+ + GG GGG+P  AQ+GG + +K ++A
Sbjct: 798 STFE--KLSFAVGVSKALTGKYKAGNLVKIAAE-ITGGKGGGKPDFAQAGGKDKSKIEEA 854

Query: 889 IAGVASFLKK 898
           +  +   +K+
Sbjct: 855 MEAIKKAIKE 864


>gi|257466745|ref|ZP_05631056.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917894|ref|ZP_07914134.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691769|gb|EFS28604.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 866

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/910 (35%), Positives = 501/910 (55%), Gaps = 58/910 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF+   H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIVWSWEFVTEVLGL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+  D+EA K+W +      ++I+R+  ++N+W+   TG CGPCSEI  D G
Sbjct: 116 PKDKLWVTVFTTDDEAEKIWIEDCHFPRERIVRMGESENWWAAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     RYIEIWNLVF ++ +        LPK +IDTG GLER+A ++
Sbjct: 176 PEYGGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K+NN++ DL   L++ + ++T  KY        + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKSNNFETDLLFPLVEEAGRLTNSKYHESPEKDFSLKVITDHSRAVTFLIHDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ + RLLG  E  +  ++  +  +   AYP+L      I++ ++ E+
Sbjct: 296 GRGYVLRRILRRAVRHGRLLGQKELFLYKMVKKVVDQFAIAYPDLTANLENIQKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  +    +     L+G++ FK+YDT+G P ++ ++I   RG   +
Sbjct: 356 EKFSNTLDQGIQLVNEQIEMALQAGKSSLDGEITFKMYDTYGFPYELTEEICNERG-IAV 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +K+G T+F GY        +   R
Sbjct: 415 SQEEFLAKMEEQKEKARSARAVIMEKGQDSFIEEFYDKHGVTEFTGYHSTEEKAKLLNIR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                    + ++FD+TPFY E+GGQ+GD G 
Sbjct: 475 Q-------------------------------KEDGTLLLIFDKTPFYGESGGQVGDHGS 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  + ++ DV KK + IF H   V  G         LT+D + R  +S NH+ATHLL
Sbjct: 504 ISSEAFQGKVLDV-KKQKEIFTHIVEVVSGEAEEGKEYTLTVDSKYRAAVSKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  + LRFD +H + +T  +++ +E+ VN+ I++ + V    
Sbjct: 563 HKALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIQEVEERVNEKISEAIAVEVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              E+A   GA  L G KY D VRVV V        S+ LCGG HV + G I L  IVSE
Sbjct: 623 KTMEEAKVCGAMMLFGDKYGDVVRVVHVPG-----FSTELCGGIHVENIGHIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A   +      LK  A  LK     ++ +VE++ +E ++    
Sbjct: 678 GGIAAGVRRIEAKTGYEAYRFVEENIGMLKKTAKLLKTEDSLLLEKVEKVLQEEKEKARE 737

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K ++  ++         +IADV        +    +L+ ++D ++ K ++ I++L 
Sbjct: 738 ITSLKEKIAKQEAEALYTHALEIADVKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              +  K S  + V++ L  ++ A +L +++A+ + GG GGG+P  AQ+GG + +K ++A
Sbjct: 798 STFE--KLSFAVGVSKALTGKYKAGNLVKIAAE-ITGGKGGGKPDFAQAGGKDKSKIEEA 854

Query: 889 IAGVASFLKK 898
           +  +   +++
Sbjct: 855 MEAIKKAIEE 864


>gi|222100169|ref|YP_002534737.1| Alanyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
 gi|221572559|gb|ACM23371.1| Alanyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
          Length = 864

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/902 (39%), Positives = 538/902 (59%), Gaps = 49/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  +
Sbjct: 4   MTSEEIREAFLRFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + 
Sbjct: 63  ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + +L+++VY+EDEEAF++W +  GL   KI+R+   DNFW     TGPCGP +EIF+D G
Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRLGKEDNFWGPAGPTGPCGPDTEIFYDTG 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C  G     +    R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   ++
Sbjct: 179 YSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D DLF+ +I+A E++TG+ Y+ +    ++ RVI DH+R+ +FLI++G+ P+NE
Sbjct: 239 QGVYSNFDTDLFQPIIKAIEELTGVSYKTDEEKDISIRVIADHIRAITFLISEGVFPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRAM +  LLG  EP +  ++ A+  +MG  YPE+++ K +++E L SE+
Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMNEPFLYKVVDAVVEKMGKVYPEIVRGKDMVKEVLSSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF KTL++G+ + D ++        ++   AF+LYDT+GLPL++  +I   +G   ID+
Sbjct: 359 NRFLKTLEQGMRIFDELVEK---KGKIDSQDAFRLYDTYGLPLELTLEIAKEKG-VEIDV 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ ++EQ+ ++R     +      +   SL E +  T+F GY+ L            
Sbjct: 415 KDFDRYMKEQQRKSREAMGKVEFAKRYEYLESLPEGF-KTEFTGYERLED---------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         +    I ++   +EEA     VEVVF +TPFYAE GGQ+ D G   
Sbjct: 464 -------------EAETVLIAKENRPLEEAKEKDTVEVVFSRTPFYAEKGGQVSDVGTVE 510

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +    ++  V +  EG+ VH   V +GILR    + L +D + R+    NH+ATHLLH 
Sbjct: 511 WESGEGRVEYVFEALEGVIVHRIRVLKGILRRGQKVFLKVDRKRRKDTMRNHTATHLLHA 570

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + P+ LRFD TH + +++ E+K +ED VN+ I Q +PV  R  +
Sbjct: 571 ALRKVLGEHVRQAGSLVAPERLRFDFTHYRALSAEEIKKVEDMVNEWIMQAIPVEVRYTS 630

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+AI SG  AL   KY D V        +    S  LCGGTHV +TG+I L  IVSE S
Sbjct: 631 YEEAIRSGVIALFTEKYGDVV-----RVVEVPGVSKELCGGTHVKNTGQIGLFKIVSEES 685

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RR+EA+TG      +   ++ +  L   L   +  ++ RVE + E+ R+L+   +
Sbjct: 686 VSSGVRRVEAVTGFYTLELIRRYEDVMTRLKELLGAGENEIINRVESLREKVRELERRLS 745

Query: 776 KRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + ++  + E +S  K+ D       +   V+SK L  + D +  + +SG+++L     E 
Sbjct: 746 QGRV--SEERISEKKLNDGTKLFYGVFEGVESKHLGGIADNVLNREKSGVVVLFSRF-ED 802

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S+++ V+ DL+++++A  +AR  AK L GG GGGR + AQ+GG +  + D+ +  +  
Sbjct: 803 KVSLVVKVSNDLIEKYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERLDEVLNRLEE 861

Query: 895 FL 896
           FL
Sbjct: 862 FL 863


>gi|225389081|ref|ZP_03758805.1| hypothetical protein CLOSTASPAR_02827 [Clostridium asparagiforme
           DSM 15981]
 gi|225044859|gb|EEG55105.1| hypothetical protein CLOSTASPAR_02827 [Clostridium asparagiforme
           DSM 15981]
          Length = 887

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/907 (37%), Positives = 511/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 14  VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK+ AI+  W+ LT+   LD  
Sbjct: 74  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKDDAIRWTWEFLTEVVGLDPD 129

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF++W +  G+ A++I +    DNFW    +GPCGPCSE+++D+GE  
Sbjct: 130 RLYPSVYLEDDEAFRIWNEKIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 188

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG     + +RYIE+WN VF QF+   K     L   +IDTGMGLER+A V+Q   
Sbjct: 189 GCGKPGCTVGCDCDRYIEVWNNVFTQFDNDGKGHYTELEHKNIDTGMGLERLAVVVQGVD 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + + +D  K L+    ++   +Y+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGY
Sbjct: 249 SLFTVDTNKALLDRVCELAHTEYQKDHETDVSLRIVADHVKSCTFMISDGIMPSNEGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R LG     M  L   +       YPEL   K +I + L  E+++F 
Sbjct: 309 VLRRLLRRAARHGRKLGIEGQFMAGLAATVIELSKDGYPELEDNKAMIFKVLEQEEDKFN 368

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L+  ++ +    +  L G  AFKLYDT+G PLD+ ++IL  +G  G+D   
Sbjct: 369 KTIDQGLSILNDRIADMQAKGENTLAGADAFKLYDTYGFPLDLTREILEEKGY-GVDEDG 427

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A++EQ+ +AR           +   +   +    T+F+GY+ L              
Sbjct: 428 FAAAMKEQKDKARNARKTTNYMGADVTVYQSIDPAITTEFVGYNNL-------------- 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + EIVE    GQ+  V+ +QTPFY   GGQ GD G   G 
Sbjct: 474 ---------TAESKITVLTTEDEIVEALTDGQRGTVITEQTPFYGTMGGQQGDVGVITGQ 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D      G   H  ++  G+L+   ++ L++  +NR     NHSATHLL  AL
Sbjct: 525 NGEFKVEDTIHLQGGKVGHVGVMTHGMLQNGNTVTLSVCARNRALTCQNHSATHLLQKAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q+GS +    LRFD TH   +T  EL  +E+ VN  I   LPV T++M  +
Sbjct: 585 RLVLGEHVKQSGSYVDAGRLRFDFTHFSAMTPEELGKVEELVNQEIRAGLPVETQVMTLD 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV +     G  S+ LCGGTHV++TG I    I+SE+ I 
Sbjct: 645 EAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVANTGSIASFKILSETGIA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    H    +++L   A   K +   +  ++E + EE + L   + K 
Sbjct: 700 AGVRRIEALTSEGLMKHYEEVEKELHEAAKTAKTTPAGLSAKIEGLLEEIKALSAENEKL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + L        ++  V  ++  +++VD   L+ + D L+ K+  G++++  +  
Sbjct: 760 KSKLAKDSLGDVMNQVKEVNGVKVLASQVADVDMNGLRGLGDQLKDKLGEGVVLIASVM- 818

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++   T+    +  +A +L +  A ++GGGG GGRP MAQ+GG N    ++A+  
Sbjct: 819 DGKVNLMATATDGAQKKGAHAGNLIKAIAGLVGGGG-GGRPGMAQAGGKNPAGVEEALKK 877

Query: 892 VASFLKK 898
               +++
Sbjct: 878 AVEVVEE 884


>gi|306820448|ref|ZP_07454084.1| alanine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551523|gb|EFM39478.1| alanine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 880

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/908 (36%), Positives = 528/908 (58%), Gaps = 47/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +FL+FF+   H +  S SL+P ND +L+  N+GM P KN F G E P  + +
Sbjct: 4   MKANDIRKSFLDFFESKEHYVKNSFSLVPKNDKSLLLINAGMAPLKNYFLGIETPPAKRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR G    D++N+G+T RH TFFEMLGNFSFG YFK  A   AW+ +TK   +D
Sbjct: 64  ATCQKCVRTG----DIENIGKTARHATFFEMLGNFSFGDYFKNEATAFAWEFVTKVLKMD 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET-GPCGPCSEIFFDQG 180
           + +L++TVY+ED+EA ++W+   G++ D+I+++   DNFW +    GPCGPCSEI+ D+G
Sbjct: 120 EEKLWVTVYEEDDEALEIWRDKVGVNPDRIVKLGKEDNFWEIGNGQGPCGPCSEIYIDRG 179

Query: 181 ECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G        + +R++E WNLVF QF++Q       L   +IDTGMGLERMA ++Q
Sbjct: 180 EEFGCGHKDCKPGCDCDRFLEFWNLVFTQFDKQVDGSYKKLEHPNIDTGMGLERMACIMQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              + +DID  K++     +++G KY+ +    V+ R+I DH+R+ +F+++DGI+P+NEG
Sbjct: 240 GVDSIFDIDTMKNIRDKVCEISGKKYQQDEKTDVSIRIITDHIRAITFMVSDGIVPSNEG 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR+ RRAM +A+LLG  +  +  L   +       Y EL Q +  I + L+ E+E
Sbjct: 300 RGYVLRRLARRAMRHAKLLGIEQKFIETLANVVIDVYQDGYEELGQNRDYINKVLKIEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +FG+T++ G+ +L+  ++      +  +NG  AFKLYDT+G PL++  +I   +  + +D
Sbjct: 360 KFGETIETGMNILNQYIADSQKANNSKINGQDAFKLYDTYGFPLELTLEIAEEKNCS-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I  F   +E QR RAR           +    SL      T+FIGY+ L           
Sbjct: 419 IEEFENQMEMQRQRARNARAKGSDIGWKDEISSLDLSVKNTEFIGYEKLED--------- 469

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          +++  IV  G++ ++A  GQ++ ++FD+TPFYAE+GGQ+GDTG  
Sbjct: 470 --------------KAVIADIVIDGKLSDKAAQGQEIILIFDKTPFYAESGGQVGDTGLI 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
               + +Q+ +V K   G+F+HH  + +G L+    + L +D +NR     NH+ATHLLH
Sbjct: 516 KNATVEIQVNNVTKSTNGLFLHHCKLNKGELKKGDKVELLVDVKNRFATMRNHTATHLLH 575

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG H+ Q GS ++PD LRFD  H   ++  EL  +E  VN+ I   + V T++M
Sbjct: 576 KALKVVLGDHIQQAGSLVSPDRLRFDFNHFAQVSKEELMKVEQLVNEQIYNAIDVQTQVM 635

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + EDA  +GA +L   KY + VRV+S+     G  S   CGGTHV ++ EI +  IVSE 
Sbjct: 636 DIEDAKKTGAMSLFDEKYGETVRVLSI-----GEFSKEFCGGTHVKNSNEIGMFKIVSEG 690

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEAITG    + ++ + E +++++S LK SQ N++ R  ++  E + LQ   
Sbjct: 691 GVASGVRRIEAITGYSVYNFIVEKQELIENVSSTLKTSQDNLLKRASDLMAENKNLQKKI 750

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + +      D+     S  KI DVN +     +++   L+     +  K+++ +++   
Sbjct: 751 KEVQSAGAKTDIDSVIKSAKKINDVNLVISSFEDMEDDILRDFAQNIIDKVENSVVVFSN 810

Query: 830 ISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           ++ E  K + L +V ++L+ ++NA  + +  A ++ GG GGG+P+MA +GG + +K  +A
Sbjct: 811 VNTENQKLTFLCMVAKNLIPKYNAGKIVKEVA-MVTGGNGGGKPNMAMAGGKDVSKIQEA 869

Query: 889 IAGVASFL 896
           ++     L
Sbjct: 870 LSKAEEVL 877


>gi|328554359|gb|AEB24851.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
 gi|328912763|gb|AEB64359.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 878

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/915 (37%), Positives = 518/915 (56%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   L +TV+ EDEEA+ LW +  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGEKYGNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q    N+D DLF  +I+A+E+++G  Y  +       +VI DH+R+ +F ++DG 
Sbjct: 234 MVSVIQNVPTNFDTDLFMPIIEAAERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +G + P M  L+P +   M + YPE+ + +  I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTIGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+    ++   I++G   FKLYDT+G P+++ ++     
Sbjct: 354 IKTEEERFHETLNEGLAILSDVIKKEKENGSGIISGKDVFKLYDTYGFPVELTEEY-AED 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
               +D   F   +E+QR RAR     +GS   +    +L++    + F+GY   +    
Sbjct: 413 EQMKVDHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSATK---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + V  ++  G+++ EA  G  V+++ D+TPFYAE+GGQ+
Sbjct: 467 -------------------AEAKVIELLHDGQLISEAHEGDTVQILLDETPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G        + I DV+K   G  VH   V+ G ++   S+   ++ Q R  +  NH+
Sbjct: 508 GDRGVLRSAQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++P
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWASIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A   GA AL G KY D VRVV V     G +S  LCGG HV++T EI L 
Sbjct: 628 VAIDLKPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK +  +V  R++ +  E +
Sbjct: 683 KIVSESGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKTNVKDVPKRIQSLQAELK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           + Q  +     +L   +          I  V  ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 EAQRENESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  + K ++   VT+DL+++  +A  + + +A+V GGGG GGRP MAQ+GG   
Sbjct: 803 VIILGAVQND-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVCGGGG-GGRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            K ++A+     ++K
Sbjct: 861 EKLEEALTSAEDWIK 875


>gi|261418428|ref|YP_003252110.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319767612|ref|YP_004133113.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261374885|gb|ACX77628.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317112478|gb|ADU94970.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 878

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/915 (38%), Positives = 518/915 (56%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTSAQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL +TV+ EDEEA+ +W+   GL  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++LQ+   N++ DLF  +I+A+EQ+ G +Y  + +  V  +VI DH+R+ +F I DG 
Sbjct: 234 MCSILQDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKHIGIERPFMYELVPVVGEIMHDYYPEVKEKADFIARV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL  GL +L  V+    +   +++ G+ AF+LYDT+G P+++ ++     
Sbjct: 354 IRTEEERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTEEYAAEA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F + +E QR RARA    + S   +     L +    ++F+GYD L     
Sbjct: 414 GMT-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKDESRFVGYDEL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               +S V AIV+ G +VEE  +G++ +++ D TPFYAE+GGQ+
Sbjct: 466 ------------------VAASTVIAIVKDGRLVEEVKAGEEAQIIVDVTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK   G  +H  IVE G ++        +D   R ++  NH+
Sbjct: 508 ADQGVFESETGTAVVKDVQKAPNGQHLHAIIVEYGTVKKGSRYTARVDEAKRMRIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I ++LP
Sbjct: 568 ATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVNEQIWKSLP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTSAIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E +
Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARLDGLFAELK 742

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L+  +     +L   +          +  V  ++  +   D  +L+++ D L++K+ + 
Sbjct: 743 ELERENESLASRLAHMEAEHLTRQVKDVNGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L    +  K  ++  VT+DL+ + F+A  L +  A   GGGG GGRP +AQ+GG + 
Sbjct: 803 VIVLASA-QGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRCGGGG-GGRPDLAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
           +K  +A+  V +++K
Sbjct: 861 SKVGEALGYVETWVK 875


>gi|260583982|ref|ZP_05851730.1| alanine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260158608|gb|EEW93676.1| alanine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 881

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/920 (37%), Positives = 507/920 (55%), Gaps = 62/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + S IR  +L+FFQ+ GH++ PS+SLIP NDPTL++ NSG+   K  F G E P  
Sbjct: 1   MKKLSSSEIRQMYLDFFQEKGHKVHPSASLIPVNDPTLLWINSGVATLKKYFDGTETPEV 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG T RHHT FEM+GNFS G YFKE  I  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEVIPWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  RLY+T Y +D E   LW +  GL  D II +   DNFW +   GPCGP +EIF
Sbjct: 117 WLALDPNRLYVTYYPKDPETKYLWMEKVGLPEDHIIPV--EDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF QF          LP  ++DTGMGLE
Sbjct: 174 YDRGEKYQTLAEDDPENYPGGENERYLEIWNLVFSQFNHMPDGTYPPLPHKNVDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           R+ +V+Q+   N++ DLF  +IQ  EQ++   KY  +    V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSVIQDTPTNFETDLFMPIIQQLEQLSAGKKYNTSKDLDVSFKVIADHIRAVSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGY++RR++RR++ + + LG     +  L+P + + M S YPE+ +    I+
Sbjct: 294 GALPSNEGRGYIIRRLIRRSVMHGQRLGIQGSFLTKLVPTVASIMHSYYPEVTENMEFIQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + +E+ RF +T+  GL +L+ V + +      +L+G+ AFKLYDT+G P ++  +   
Sbjct: 354 KVIANEENRFQETIHDGLAILETVFAEMKEQNQTVLSGENAFKLYDTYGFPYELTLEYAS 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G   +D   F   ++ Q+ RARA      S   +     L++    + F+GYD     
Sbjct: 414 DNGYE-VDEEGFQAEMKAQKERARAARNTETSMNVQSAV--LRDITVESTFVGYDRT--- 467

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                   ++ AIV + E+VE A+   +V+VVF+QTPFYAE GG
Sbjct: 468 --------------------TEKGLLSAIVYEDELVESALEDTRVQVVFNQTPFYAEMGG 507

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G    +  ++  T VQ KKA      H I     ++   + VL +D Q R +L  
Sbjct: 508 QLSDHGVIKDESGQVVATVVQVKKAPNGQPLHTIDVIAPMQLNSTYVLEVDQQERAKLIK 567

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H +Q GS + P  LRFD +H   +T+ EL  +E  VN+ I  
Sbjct: 568 NHTATHLLHQALKEVLGTHANQAGSLVAPGYLRFDFSHFGQVTAEELAEMERIVNEKIWA 627

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            L VVT     E+A   GA AL G KY ++VR+V++        S  LCGG HVS+T EI
Sbjct: 628 ALDVVTVETTLEEAKKLGAMALFGEKYGNKVRMVNIAN-----WSIELCGGVHVSNTQEI 682

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764
            L  I+SES I AG+RRIEA+T Q A   L   +  LK +AS +K V   +   RV  + 
Sbjct: 683 GLFKILSESGIGAGVRRIEAVTSQEAFELLAKHELLLKQIASDVKSVQLDSTPERVSHLQ 742

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E ++ Q   +  K +L   ++     S     + +F++  +   D  EL+ + D  ++K
Sbjct: 743 QELKEAQHEISALKAKLMKSEVADLFESVSTAGNYSFITVHLPNKDMNELRQLADTWRQK 802

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S + ++   ++ +KA++L  V++D  ++   A D+ +  A  + GG GGGRP MAQ+G
Sbjct: 803 AASDVFVVA-TNEGEKANLLAAVSKDANEKGIKAGDIIKSIASHIQGG-GGGRPDMAQAG 860

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      A+  V  FL +
Sbjct: 861 GKNPAGIPAALKAVEEFLTQ 880


>gi|297529280|ref|YP_003670555.1| alanyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297252532|gb|ADI25978.1| alanyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 878

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/915 (38%), Positives = 519/915 (56%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTSAQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL +TV+ EDEEA+ +W+   GL  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++LQ+   N++ DLF  +I+A+EQ+ G +Y  + +  V  +VI DH+R+ +F I DG 
Sbjct: 234 MCSILQDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKHIGIERPFMYELVPVVGEIMHDYYPEVKEKADFIARV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL  GL +L  V+    +   +++ G+ AF+LYDT+G P+++ ++     
Sbjct: 354 IRTEEERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTEEYAAEA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F + +E QR RARA    + S   +     L +    ++F+GYD L     
Sbjct: 414 GMT-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKDESRFVGYDEL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               +S V AIV+ G +VEE  +G++ +++ D TPFYAE+GGQ+
Sbjct: 466 ------------------VAASTVIAIVKDGRLVEEVKAGEEAQIIVDVTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK   G  +H  IVERG ++        +D   R ++  NH+
Sbjct: 508 ADQGVFESETGTAVVKDVQKAPNGQHLHAIIVERGTVKKGSRYTARVDEAKRMRIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I ++LP
Sbjct: 568 ATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVNEQIWKSLP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTSAIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E +
Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARLDGLFAELK 742

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L+  +     +L   +          +  V  ++  +   D  +L+++ D L++K+ + 
Sbjct: 743 ELERENESLAARLAHMEAEHLTRQVKDVNGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L    +  K  ++  VT+DL+ + F+A  L +  A   GGGG GGRP +AQ+GG + 
Sbjct: 803 VIVLASA-QGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRCGGGG-GGRPDLAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
           +K  +A+  V +++K
Sbjct: 861 SKVGEALGYVETWVK 875


>gi|237744281|ref|ZP_04574762.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229431510|gb|EEO41722.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 867

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/909 (36%), Positives = 510/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y        + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAGKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLKNIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGMQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVTVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYEKTEDEGKLLSLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DV +K + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDDFIGKVLDV-QKQKDIFIHTVEFEKGIAEENKTYKLKVDIVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGIEVNISH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  IVSE
Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG+RRIEA TG  A      + + LK +   LK +  N++ +VE+  E  +  +  
Sbjct: 678 SGIAAGVRRIEAKTGYGAYLVEKTEADILKDIERKLKATNSNLIEKVEKTLETLKDTEKE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I     +     +  +++L++++D ++ + +  II+L 
Sbjct: 738 LEALKQKLALFETKAAISGMEEIGGTKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            I    K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K   A
Sbjct: 798 SIQ--DKLAFAVGVTKTLTDKVKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVRDIIE 863


>gi|254931439|ref|ZP_05264798.1| alanyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|293582990|gb|EFF95022.1| alanyl-tRNA synthetase [Listeria monocytogenes HPB2262]
          Length = 879

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 514/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ++G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++I+ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEQV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGTALDYVSTWVKE 876


>gi|89895167|ref|YP_518654.1| hypothetical protein DSY2421 [Desulfitobacterium hafniense Y51]
 gi|122482444|sp|Q24UT2|SYA_DESHY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89334615|dbj|BAE84210.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 875

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/908 (37%), Positives = 522/908 (57%), Gaps = 48/908 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +R  FL FF   GH +LPS+SLIP +DPTL+ T +GMVPFK  F  + +P +  
Sbjct: 1   MYTGNQLRDMFLNFFASKGHRILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPPFPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR      DL+ VG+T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L
Sbjct: 61  ATTSQKCVRT----PDLEVVGKTARHHTFFEMLGNFSFGDYFKAEAIPWAWEFVTEVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L+ITV+ EDEEA  LW + +G+S ++I      +N W+    GPCG CSEI+ D G
Sbjct: 117 PIDQLWITVHPEDEEAKNLWIEKTGVSPERIKY--DPENLWAAGPVGPCGYCSEIYVDLG 174

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +R++EIWNLVFMQ+ +        LPK +IDTGMGLER+A+V+Q
Sbjct: 175 ESRGCGKPDCALGCDCDRFLEIWNLVFMQYNRDEAGLLTPLPKQNIDTGMGLERIASVMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF  +I    +++G+ Y     N V  +V+ DH R+ SF+++DGI P +EG
Sbjct: 235 GAASNFDTDLFLPIINKVAELSGIPYHDSPKNDVAMKVVADHTRAVSFMLSDGIRPGSEG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ YARLLG  +P +  +   +  +    YPEL + +  I   LR E++
Sbjct: 295 RGYVLRRILRRAIRYARLLGIDKPFLEQIFLIIQKDYSHHYPELKENENFILNHLRLEEK 354

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TL++G  +L   +  L +  + +L+G  AF LY+T+G P+++ +++L  +G++ +D
Sbjct: 355 NFQATLEQGTQILQDKVKTLQEAGETMLSGADAFYLYETYGFPVELTEEMLIEQGMS-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +FN A EE R  A+  S  + +           +  G T F+GY  L           
Sbjct: 414 METFNAAAEEHRRLAKEQSQQMKAVQESAAISEKAKALGTTPFLGYHEL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V+A+ + GE V++A  G +V +   ++PFYAE+GGQ+ D+G  
Sbjct: 463 ------------AAHTKVEALFRDGEEVKDAAEGDEVLIFLRESPFYAESGGQISDSGVI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                  ++ +V+K   G   H  ++ +G+L T   +   +D   R   + +HSATHLL 
Sbjct: 511 RSLRAEAKLIEVKKGVTGTVYHRFLLTQGVLHTGDEVEALVDEHLRLATARHHSATHLLQ 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +TPD LRFD TH   +TSAEL+ +ED +N+ +  N+PV    M
Sbjct: 571 AALRAVLGEHVQQAGSLVTPDRLRFDFTHFSALTSAELQRVEDLLNEAVLANMPVAAEEM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A ASGA AL G KY D VRVVS+     G +S  LCGGTH+ +TG+I L+ I+SE 
Sbjct: 631 SLDAAKASGATALFGEKYGDTVRVVSM-----GDYSLELCGGTHIRATGDIGLVKIISEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+ G  A  ++   ++++   A  LK    +++ R++ +  + + L+   
Sbjct: 686 GIGAGLRRIEAVAGAEALKYMRSLNDQILDAAQLLKAQPSDLLKRIQGLLVQVKDLEKEV 745

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +   ++   ++         +  V  ++  +S  D   L++  D L+ K++ G+++L G
Sbjct: 746 QQLNAKVAKSEVESLLQQVKDVEGVPVLAAKVSAQDMDTLRNTADLLKDKMKDGVLVL-G 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + E K + + VVT   L   +A  + +  AK+ GGGG GGRP MAQ+GG +  K  +A+
Sbjct: 805 AAVEGKVNWVTVVTPVGLRGLHAGQIIKEVAKITGGGG-GGRPDMAQAGGKDAAKLGEAL 863

Query: 890 AGVASFLK 897
             V + +K
Sbjct: 864 DQVPAIIK 871


>gi|319651658|ref|ZP_08005785.1| alanyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317396725|gb|EFV77436.1| alanyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/915 (38%), Positives = 531/915 (58%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLSGAEIRRMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIIWAWEFLTDKN 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               +  +L +T++ ED+EAFK+W++  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFEDEKLSVTIHPEDDEAFKIWREKVGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E +RY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGPEYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V+Q    N+D DLF  +I+ +E+++G KY       V  +VI DH+R+ +F + DG 
Sbjct: 234 MASVVQNVPTNFDTDLFMPIIRGTEEISGKKYGASKETDVAFKVIADHIRTVAFAVGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +   EP M  L+P +   M   YPE+ +    I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQININEPFMYDLVPVVGEIMHDFYPEVKEKTEFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL  GL +L  V+    +     + G   F+LYDT+G P+++ ++     
Sbjct: 354 IKNEEERFHETLHEGLAILSSVIKKEKEKGSVTIQGADVFRLYDTYGFPVELTEEYAEEE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F + +E QR RAR+    + S   +     L E    ++F+GYD L+ +  
Sbjct: 414 GMK-VDHAGFEKEMEGQRERARSARQDVDSMQVQGGV--LGELKIESEFVGYDKLQTA-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + V AIV+ G++++EA +G++V+++ ++TPFYAE+GGQ+
Sbjct: 469 ---------------------AKVAAIVKDGQLIDEAHAGEEVQLILNETPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +G+++ I DVQK   G  +H A++E G L+ E S++ ++D Q R ++  NH+
Sbjct: 508 ADQGTLKAEGLKVSIKDVQKAPNGQNLHRAVIEEGTLKAEASVLASVDEQIRSKVIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSHV+Q GS + PD LRFD +H   ITS EL+ IE  VN+ I  +L 
Sbjct: 568 ATHLLHQALKDVLGSHVNQAGSLVGPDRLRFDFSHFGQITSEELEKIEAIVNEQIWVSLD 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V     + ++A A GA AL G KY   VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VDINFKDIDEAKAMGAMALFGEKYGKIVRVVQV-----GDYSLELCGGCHVPNTSSIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AG RRIEA+TG+ A   L  Q   LK  +  LK +  ++  R++ +  E +
Sbjct: 683 KIQSESGIGAGTRRIEAVTGEAAYKLLNDQIHVLKEASGKLKTNPKDLSSRIDVLLGEMK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +LQ  +     +L   +         +I  +  ++  +   D   L+++ D L++K+ S 
Sbjct: 743 QLQRENESLAAKLGNIEAGSLVSKAKEINGITVLAEKVQASDMNNLRNMADDLKQKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L  +  E K +++  VT+DL+ + F+A    +  A   GGGG GGRP MAQ+GG + 
Sbjct: 803 VVVLGSV-NEGKVNIIAGVTDDLIKKGFHAGKAVKEVAAKCGGGG-GGRPDMAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
            K + A+  V  ++K
Sbjct: 861 EKLESALQFVEEWVK 875


>gi|317471795|ref|ZP_07931133.1| alanyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316900721|gb|EFV22697.1| alanyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 879

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/910 (38%), Positives = 521/910 (57%), Gaps = 50/910 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M +  V+ +R  FL+FF+   H ++ S SL+P ND +L+  N+GM P K  FTGQE P  
Sbjct: 1   MKSYGVNELRKMFLDFFESKDHLVMKSFSLVPQNDKSLLLINAGMAPLKPYFTGQEVPPK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             V T QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+  
Sbjct: 61  TRVATCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY +D+EAF++W+K  G++ ++I R    DNFW     GPCGPCSEI++D
Sbjct: 117 GLDPERLYPSVYLDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      E +RY+E+WN VF QFE         L   +IDTGMGLER+A V
Sbjct: 176 RGEKYGCGSPDCTVGCECDRYMEVWNNVFTQFENDGNGNYEELDNKNIDTGMGLERLAVV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +QE  + +D+D  K +     ++ G+ Y  +  N ++ RVI DH+RS+SF+I+DG++P+N
Sbjct: 236 VQEVDSIFDVDTIKAIRDRICELAGVTYGADEKNDISIRVITDHIRSASFMISDGVMPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + R+LG  E  +  L   +  E    YPEL + +  I + L +E
Sbjct: 296 EGRGYVLRRLIRRAARHGRMLGMKELFLAGLSKTVIAESKDGYPELKEKEEFIYKVLTTE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F +T+D+GL +L  +   + ++    L G  AFKLYDT+G PLD+ ++IL  +G   
Sbjct: 356 EEQFNRTIDQGLQILADMEEAMSREGKKELAGKDAFKLYDTYGFPLDLTKEILEEKG-IS 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E+QR +AR           +   +   +    ++F+GYD L         
Sbjct: 415 VDETGFQKAMEQQRKQAREARETTNYMGADATVYEQLDPAMTSEFVGYDTL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S + A+     + +  V GQ+  ++  +TPFYA +GGQ  D G
Sbjct: 466 --------------TCESEIIAMTTDKNLTDSLVEGQRGTIICSRTPFYATSGGQEADQG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + +     + DV K + G F H   V  G L     ++L ++ +NRRQ   NHSATHL
Sbjct: 512 VILSENSSFAVEDVIKLSGGKFGHVGYVNEGNLSVGEKVLLNVNERNRRQTEKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS      LRFD TH  P+TS E+K +ED VN+ IA N PV T+
Sbjct: 572 LQKALRTVLGSHVEQAGSSNNAKHLRFDFTHFSPMTSEEIKKVEDIVNEEIAANRPVETK 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ ++A  +GA AL G KY D VRVVS+     G  S  LCGGTHV++TG I +  I+S
Sbjct: 632 LMSMDEAKNTGAMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVANTGSITVFKILS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG+RRIEAIT +    +    +E+L   A  +K +   ++ R+E +  E ++L  
Sbjct: 687 ETGVAAGVRRIEAITDKAVFEYYEKMEEELMEAAKVVKSTPAKLMARLEALMTELKELHS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +L  + L         +  V  ++  +++VD   L+ + D+L++K+  G+I+L
Sbjct: 747 ENESLKSKLAKDALGDVMDQVQDVNGVKLLAAKVADVDMNGLRELGDSLKEKLGEGVIVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              S   K  ++ + T+       +A +L +  A  +GGGG GGRP+MAQ+GG      D
Sbjct: 807 AS-SLGGKVFLVAMATDGAQKAGAHAGNLIKGIAGCVGGGG-GGRPNMAQAGGKKPEGID 864

Query: 887 QAIAGVASFL 896
            AIA     L
Sbjct: 865 DAIAKAKEEL 874


>gi|313637763|gb|EFS03118.1| alanyl-tRNA synthetase [Listeria seeligeri FSL S4-171]
          Length = 879

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/916 (38%), Positives = 516/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  +W++  GL+ + I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWREKIGLTDEHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDENDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ++G+KY  E  N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQTAFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++++ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSTFVGYNTTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V+E  +G   +++F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYIIQNDALVDEVAAGXXAQLIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H  +V+ G+L T  ++ L++D   RR+   NH+
Sbjct: 508 ADKGTIQSETGLAYVEDVQKAPNKQNIHRVVVKEGVLTTGDTVKLSVDKVKRRETVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIA 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK S      ++E +  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKAAYHFVTEQENTLKHAANLLKTSTKETPQKIELLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  VN ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVRRENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  E K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGE-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGSALDYVSTWVKE 876


>gi|138896126|ref|YP_001126579.1| alanyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|134267639|gb|ABO67834.1| Alanyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 892

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/915 (39%), Positives = 522/915 (57%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P  
Sbjct: 15  MKKLTSAEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDN 74

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 75  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 130

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL +TV+ EDEEA+ +W+   GL  ++IIR+     FW + E GP GP +EIF
Sbjct: 131 WIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRLEGK--FWDIGE-GPSGPNTEIF 187

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 188 YDRGEAFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 247

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++LQ+   N++ DLF  +I+A+EQ+ G +Y  + N  V  +VI DH+R+ +F + DG 
Sbjct: 248 MCSILQDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGA 307

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   
Sbjct: 308 LPSNEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARV 367

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL  GL +L  V+    K    ++ G+ AF+LYDT+G PL++ ++     
Sbjct: 368 IRTEEERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEA 427

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G++ +D   F + +E QR RARA    + S   +     L +    ++F+GYD L     
Sbjct: 428 GMS-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKDESRFVGYDEL----- 479

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              VSS V AI++ G+ VEE  +G++ +++ D TPFYAE+GGQ+
Sbjct: 480 ------------------VVSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQI 521

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G+     + DVQK   G  +H  +VERG ++        +D   R Q+  NH+
Sbjct: 522 ADQGVFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHT 581

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I +++P
Sbjct: 582 ATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIP 641

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 642 VDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLF 696

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E R
Sbjct: 697 KIVSESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELR 756

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +LQ  +     +L   +         ++  V  ++  +   D  +L+++ D L++K+ + 
Sbjct: 757 QLQRENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  + +  K  ++  VT+DL+ + ++A  L +  A   GGGG GGRP MAQ+GG + 
Sbjct: 817 VIVLAAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKDA 874

Query: 883 NKADQAIAGVASFLK 897
           NK  +A+  V +++K
Sbjct: 875 NKVGEALDYVETWVK 889


>gi|157965032|ref|YP_001499856.1| alanyl-tRNA synthetase [Rickettsia massiliae MTU5]
 gi|157844808|gb|ABV85309.1| Alanyl-tRNA synthetase [Rickettsia massiliae MTU5]
          Length = 883

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/901 (45%), Positives = 559/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 10  TTEEVRSKFITYFKANNHTHVPTSSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 70  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 129

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 130 DKLYATIYHTDDEAASYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 189

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 190 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 249

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNY+IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 250 NNYNIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 309

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 310 RRIMRRSMRHAHMLGAKEPLMYKLLPKLVDLMGNVYPELKRAERFISSILEQEEIRFKAT 369

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL       +D   F + 
Sbjct: 370 LERGLKLLTEETEMLTKGNELSGEVAFKLYDTYGFPLDLTEDILK-TRDISVDHKGFEEQ 428

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 429 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 469

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 470 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 525

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 526 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 585

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T  M  EDA+
Sbjct: 586 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVNTTFMATEDAV 645

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I SES+I AG+
Sbjct: 646 KQGAMALFGEKYDSEVRVVKM-----GETSLELCAGTHVRRTGDIGCFKITSESAIAAGV 700

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  +D  LKS+ S LK ++  ++ +V  I E  ++++    K    
Sbjct: 701 RRIEAVCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKEVEKELEKTHLA 760

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 761 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 819

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 820 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHKKLYSL 879

Query: 896 L 896
           L
Sbjct: 880 L 880


>gi|47093426|ref|ZP_00231191.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|226224105|ref|YP_002758212.1| alanyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|254824437|ref|ZP_05229438.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|254852128|ref|ZP_05241476.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|300764830|ref|ZP_07074820.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|47018205|gb|EAL08973.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|225876567|emb|CAS05276.1| alanyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605431|gb|EEW18039.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|293593673|gb|EFG01434.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|300514506|gb|EFK41563.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|328465542|gb|EGF36771.1| alanyl-tRNA synthetase [Listeria monocytogenes 1816]
          Length = 879

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++I+ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGTALDYVSTWVKE 876


>gi|256844995|ref|ZP_05550453.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256718554|gb|EEU32109.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 867

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDKNSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y        + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGITVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYEKTEDEGKLLNLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                   K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 E-------------------------------TKDGKYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DV +K + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFVGKVLDV-QKQKDIFIHTVEFEKGISEENKTYKLVVDVVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVSISY 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            N E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  I+SE
Sbjct: 623 HNIEEAKKLGAMMLFGDKYGDMVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIISE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      +   L  +   LK +  N+V +VE+  E  ++ +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I  V  +     +  +++L++++DA++ + +  II+L 
Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L D+  A DL +  A+ + GG GGGR   AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-ITGGKGGGRADFAQAGGKDEEKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVRGIIE 863


>gi|296333167|ref|ZP_06875620.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675327|ref|YP_003866999.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296149365|gb|EFG90261.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413571|gb|ADM38690.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 878

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/915 (37%), Positives = 517/915 (56%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRIVNAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               DQ  L +TV+ EDEEA++ W K  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDQELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q    N+D DLF  +I+A+E ++G  Y  +N      +VI DH+R+ +F ++DG 
Sbjct: 234 MVSVIQNVPTNFDTDLFVPIIKATETISGEIYGTDNVKDTAFKVIADHIRTVAFAVSDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ +    I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTINIHRPFMYDLVPVVAEIMADFYPEVKEKSDFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  ++         +++G   FKLYDT+G P+++ ++     
Sbjct: 354 IKNEEERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F + + +QR RAR     +GS   +    +L++    + F+GY   +    
Sbjct: 414 NMT-VDHKGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQTKAD-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + V  ++Q G+ ++EA  G+ V+++ D+TPFYAE+GGQ+
Sbjct: 469 ---------------------ANVIVLLQDGQFIDEAHEGESVQIILDETPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +   ++I DVQK   G  VH  +VE G ++  + +   ++   R  +  NH+
Sbjct: 508 GDKGYLRSEQAIVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSSVIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++P
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A   GA AL G KY D VRVV V       +S  LCGG HV +T EI L 
Sbjct: 628 VSIDLKPIAEAKEMGAMALFGEKYGDIVRVVQVGG-----YSLELCGGCHVRNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TGQ A   +  Q   LK  A  LK +   V  RV  +  E +
Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQAADELKTNIKEVPKRVAALQAELK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           + Q  +     +L   +         ++  V  ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 EAQRENDTLLAKLGNVEAGAILSKVKEVDGVRVLAEKVNAKDMNHLRTMVDELKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  + K ++   VT+DL+++  +A  L + +A+V GGGG GGRP MAQ+GG   
Sbjct: 803 VIVLGAVQND-KVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGG-GGRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            K ++A+A V  ++K
Sbjct: 861 EKLEEALASVEDWVK 875


>gi|205830251|sp|A8F323|SYA_RICM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 878

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/901 (45%), Positives = 559/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPTSSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAASYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNY+IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYNIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGAKEPLMYKLLPKLVDLMGNVYPELKRAERFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL       +D   F + 
Sbjct: 365 LERGLKLLTEETEMLTKGNELSGEVAFKLYDTYGFPLDLTEDILK-TRDISVDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T  M  EDA+
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVNTTFMATEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCAGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  +D  LKS+ S LK ++  ++ +V  I E  ++++    K    
Sbjct: 696 RRIEAVCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKEVEKELEKTHLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHKKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|205830105|sp|A4IR80|SYA_GEOTN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 878

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/915 (39%), Positives = 522/915 (57%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTSAEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL +TV+ EDEEA+ +W+   GL  ++IIR+     FW + E GP GP +EIF
Sbjct: 117 WIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRLEGK--FWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++LQ+   N++ DLF  +I+A+EQ+ G +Y  + N  V  +VI DH+R+ +F + DG 
Sbjct: 234 MCSILQDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL  GL +L  V+    K    ++ G+ AF+LYDT+G PL++ ++     
Sbjct: 354 IRTEEERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G++ +D   F + +E QR RARA    + S   +     L +    ++F+GYD L     
Sbjct: 414 GMS-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKDESRFVGYDEL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              VSS V AI++ G+ VEE  +G++ +++ D TPFYAE+GGQ+
Sbjct: 466 ------------------VVSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G+     + DVQK   G  +H  +VERG ++        +D   R Q+  NH+
Sbjct: 508 ADQGVFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I +++P
Sbjct: 568 ATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E R
Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELR 742

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +LQ  +     +L   +         ++  V  ++  +   D  +L+++ D L++K+ + 
Sbjct: 743 QLQRENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  + +  K  ++  VT+DL+ + ++A  L +  A   GGGG GGRP MAQ+GG + 
Sbjct: 803 VIVLAAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKDA 860

Query: 883 NKADQAIAGVASFLK 897
           NK  +A+  V +++K
Sbjct: 861 NKVGEALDYVETWVK 875


>gi|34763053|ref|ZP_00144027.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27887279|gb|EAA24376.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 867

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y        + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGITVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYEKTEDEGKLLNLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                   K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 E-------------------------------TKDGKYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DV +K + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFVGKVLDV-QKQKDIFIHTVEFEKGISEENKTYKLVVDVVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVSISY 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            N E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  I+SE
Sbjct: 623 HNIEEAKKLGAMMLFGDKYGDMVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIISE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      +   L  +   LK +  N+V +VE+  E  ++ +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I  V  +     +  +++L++++DA++ + +  II+L 
Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L D+  A DL +  A+ + GG GGGR   AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-ITGGKGGGRADFAQAGGKDEEKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVRGIIE 863


>gi|308174440|ref|YP_003921145.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307607304|emb|CBI43675.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
          Length = 878

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/915 (37%), Positives = 522/915 (57%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   L +TV+ EDEEA+ LW +  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGEKYGNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q+   N+D DLF  +I+A+E+++G  Y  +       +VI DH+R+ +F ++DG 
Sbjct: 234 MVSVIQDVPTNFDTDLFMPIIEATERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +G + P M  L+P +   M + YPE+ + +  I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTIGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+    +    I++G   FKLYDT+G P+++ ++     
Sbjct: 354 IKTEEERFHETLNEGLAILSDVIKKEKEKGSGIISGKDVFKLYDTYGFPVELTEEY-AED 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
               +D   F   +E+QR RAR     +GS   +    +L++    + F+GY  ++    
Sbjct: 413 EQMKVDHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSAVK---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + V  ++  G+++ EA  G  V+++ D+TPFYAE+GGQ+
Sbjct: 467 -------------------AEAKVIELLHDGQLISEAQEGDTVQILLDKTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +   + I DV+K   G  VH   V+ G ++   S+   ++ Q R  +  NH+
Sbjct: 508 GDRGVLRSEQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I +++P
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWESIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A   GA AL G KY D VRVV V     G +S  LCGG HV++T EI L 
Sbjct: 628 VAIDLKPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK +  +V  R++ +  E +
Sbjct: 683 KIVSESGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKSNVKDVPKRIQSLQAELK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           + Q  +     +L   +          I  V  ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 EAQRENESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  E K ++   VT+DL+++  +A  + + +A+V GGGG GGRP MAQ+GG   
Sbjct: 803 VIILGAVQNE-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVCGGGG-GGRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            K ++A+A    ++K
Sbjct: 861 EKLEEALASAEDWIK 875


>gi|15613830|ref|NP_242133.1| alanyl-tRNA synthetase [Bacillus halodurans C-125]
 gi|20139935|sp|Q9KDE6|SYA_BACHD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|10173883|dbj|BAB04986.1| alanyl-tRNA synthetase [Bacillus halodurans C-125]
          Length = 879

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 525/916 (57%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH++ PS+SL+P +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKYLTSAQVRQMFLDFFKEKGHDVEPSASLVPHDDPSLLWINSGVATLKKYFDGRVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ +L +TV+ ED+EA+  WK+  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDKEKLSVTVHPEDDEAYSYWKEKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E +RY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPEYGDQPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q    N++ DLF  +I+A+E+++G +Y  ++   V+ +VI DH+R+ +F I DG 
Sbjct: 234 MVSVIQNVPTNFETDLFMPIIRATEKISGTEYGSHHEADVSFKVIADHIRTVTFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGDIMVDFYPEVKEKAAFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L+ V+     +    ++G   F+LYDT+G P+D+ ++ +  +
Sbjct: 354 VKTEEERFHETLNEGLSILEKVIDKAKSEGASTISGSDVFRLYDTYGFPVDLTEEYVEEQ 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D+  F   +E QR RAR      GS   +     L +    + FIGY  L     
Sbjct: 414 GL-QVDLDGFEAEMERQRERARTARQQAGSMQVQDEV--LGQITVDSTFIGYKQL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + ++ IV    + +   +GQ+ +V+  +TPFYAE+GGQ+
Sbjct: 466 ------------------STETTIETIVLDKTVADYVGAGQEAKVILKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G      ++DVQK   G  +H  IV+ G L+    +   ++   R  +  NH+
Sbjct: 508 ADKGIIRGANGFAVVSDVQKAPNGQHLHTVIVKEGTLQVNDQVQAIVEETERSGIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS ++ + LRFD +H   +T  E + IE  VN+ I Q + 
Sbjct: 568 ATHLLHRALKDVLGEHVNQAGSLVSEERLRFDFSHFGQVTDEEKEKIERIVNEKIWQAIK 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       ++A A GA AL G KY D VRVV V     G +S  LCGG HV++T EI L 
Sbjct: 628 VNISTKTLDEAKAIGAMALFGEKYGDIVRVVEV-----GDYSIELCGGCHVTNTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+TG+ A   +  Q + LK  A+ +K     +V  RVE + ++ 
Sbjct: 683 KIVSESGIGAGVRRIEAVTGKEAFLFMAKQLDLLKETAATVKAKNVKDVPVRVEALQQQI 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+LQ  +     +L   +         KI  V  ++  IS  D   L+S++D L+++I S
Sbjct: 743 RELQRENESLNAKLGNMEAGSLVNEVQKIEGVPVLAKAISGADMDGLRSIVDKLKQEIPS 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +I+L G + E K +++  VT+DL+++ ++A  L +  A   GGGG GGRP MAQ+GG  
Sbjct: 803 VVIVL-GTASEGKVNIVAGVTKDLINKGYHAGKLVKEVATRCGGGG-GGRPDMAQAGGKQ 860

Query: 882 GNKADQAIAGVASFLK 897
             K   A++ V  ++K
Sbjct: 861 PEKLQDALSFVYEYVK 876


>gi|256027953|ref|ZP_05441787.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289765898|ref|ZP_06525276.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289717453|gb|EFD81465.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 867

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/909 (36%), Positives = 509/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y        + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAGKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + +R E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVRIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGMQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVTVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYEKTEDEGKLLSLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQ K + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IHSDDFIGKVLDVQ-KQKDIFIHTVEFEKGIAEENKTYKLEVDTVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGVEVNISH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  IVSE
Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVPGF-----STELCGGTHIDNIGKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG+RRIEA TG  A      + + LK +   LK +  N++ +VE+  E  +  +  
Sbjct: 678 SGIAAGVRRIEAKTGYGAYLVEKTEADILKDIEKKLKATNSNLIEKVEKTLETLKDTEKE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I     +     +  +++L++++D ++ + +  II+L 
Sbjct: 738 LETLKQKLALFETKAAISGMEEIGGAKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLTDKVKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEKLLDA 854

Query: 889 IAGVASFLK 897
              +   ++
Sbjct: 855 FKEIREIIE 863


>gi|303229350|ref|ZP_07316140.1| alanine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515886|gb|EFL57838.1| alanine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 872

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/910 (37%), Positives = 499/910 (54%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +
Sbjct: 1   MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD
Sbjct: 61  TTSQKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKDAIHWAWEFLTEVIKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG 
Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ 
Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQH 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N++ DL   +I+A+ +  G+KY    N  V+ +VI DH R+ + LI+DG+LP+NEGR
Sbjct: 234 CKTNFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ER
Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGLFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEER 353

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID 
Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDH 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+ A++EQR RAR   +   +         LK++                        
Sbjct: 413 EGFDAAMKEQRERAREARVKEDAKVATPDITFLKDE------------------------ 448

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                 ++     +S V  + +  E ++ AV G ++ V+   TPF+AE GGQLGDTG  +
Sbjct: 449 ----ELVENEAETASSVLMLGKGSERLQTAVDGDEITVIVRTTPFHAEGGGQLGDTGFIV 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G   ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH 
Sbjct: 505 GPMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTARRAAMARNHTATHLLHA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+
Sbjct: 565 ALKRVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SES 
Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSESG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRIEAITG+ A          ++ +A  LK     V  R+ ++  E ++      
Sbjct: 680 IGSGVRRIEAITGRAALDAAKHDRLTIERIAGELKTKPAQVEERLHQVLVEAKETAKELD 739

Query: 776 KRKLQLN---VEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829
           + + +++     D+   K  I DV F++  +      EL+   D    K+  SG++++  
Sbjct: 740 QIRKEVSAAGAADIVAGKVMIGDVAFVAASVKASSIDELRDFADMGLDKLDGSGVVLVGA 799

Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + +  V++D++     A ++ + +A+ + GG GGGRP MAQ+GG    K   A
Sbjct: 800 AMGDDKVNFVCKVSKDVVGKGVKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMDA 858

Query: 889 IAGVASFLKK 898
           +      +K+
Sbjct: 859 LKAAGEAVKE 868


>gi|218437893|ref|YP_002376222.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|218170621|gb|ACK69354.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 881

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/906 (37%), Positives = 514/906 (56%), Gaps = 50/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL+FF KN H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+KP Y   T
Sbjct: 9   SGSEIRSYFLDFFAKNQHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQKPDYPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVFKLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            ++ ++V++ED+EAF++W+    +   +I R+   DNFW    TGPCGPCSE+++D    
Sbjct: 124 DQIVVSVFEEDDEAFEIWRDKINIPPQRIKRMGKKDNFWQAGPTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ Q  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GDKTIDLEDDSRFIEFYNLVFMQYNQDAEGNLTPLQNKNIDTGMGLERMAQILQKVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQA+  +  ++Y+  +     + +VI DH+R+   +IADGI  +N GRGY
Sbjct: 243 NYETDLIFPIIQAAADIAKIEYKKADEKTKVSLKVIGDHVRAVVHMIADGITASNTGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +         +AYP + Q +  I+  L  E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGIEGAFINQVAEVAIALSETAYPNVRQRETPIKGELDREEAAFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            TL+RG  LL  +++ + K +   ++G  AFKLYDT+G PL++ Q+I    GL  +++  
Sbjct: 363 TTLERGEKLLSEIIAKVKKSKKKQISGVDAFKLYDTYGFPLELTQEIAEEEGLT-VNVEE 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F++ +++Q+ +++A    +   T +     L E    T+F+GY   +             
Sbjct: 422 FDEEMKKQQDQSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDAQSV----------- 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V+ ++  G+ V+ A +G +V++V +QTPFYAE+GGQ+GD G   G+
Sbjct: 470 ------------AHVEVVLVDGKTVDSAEAGTEVQIVLNQTPFYAESGGQIGDKGYLTGE 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ DV +K    FVH   VERG +    S+  TID   RR++  +H+ATHLL  AL
Sbjct: 518 TLVVRVEDV-QKESAFFVHFGRVERGTITVGDSVTATIDRACRRRVQAHHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   VSQ GS +T D LRFD    +P+T  EL+ IED +N+ IA+       IM  E
Sbjct: 577 KKIVDDSVSQAGSLVTFDRLRFDFNCPRPVTPEELQQIEDLINNWIAEAHEAHVSIMALE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY   VRV+ V        S  LCGGTHV +T EI L  I+SES + 
Sbjct: 637 EAKAKGAVAMFGEKYGAEVRVLDVPG-----VSMELCGGTHVRNTAEIGLFKIMSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+ G     +L  ++  +K L    KV    +  R+  +  E +  Q      
Sbjct: 692 AGIRRIEAVAGPAVLEYLNEREAVVKDLCDRFKVKPHEISDRITALQSELKSTQKQMESL 751

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L +        +   + D   +   I  VD   L +  + LQ+K+    ++L  I  
Sbjct: 752 QQELAIAKSDQLLSNAESVGDFKVLVAEIEGVDPNGLMTAAERLQQKLGESAVILGSIPS 811

Query: 833 EKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E K S++   +  ++   +  A       AK+ GGGG GGRP++AQ+GG + +K  +A+ 
Sbjct: 812 EGKVSLVAAFSPKVIKEKKLQAGKFIGEIAKICGGGG-GGRPNLAQAGGRDSSKLKEALE 870

Query: 891 GVASFL 896
                L
Sbjct: 871 SAKKQL 876


>gi|313608702|gb|EFR84533.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
          Length = 879

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKSLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++I+ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRVSVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVEQLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVEGD-KVNLISAVSEEAIKSGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGTALDYVSTWVKE 876


>gi|297544523|ref|YP_003676825.1| alanyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842298|gb|ADH60814.1| alanyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 877

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/909 (39%), Positives = 535/909 (58%), Gaps = 55/909 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + +TT 
Sbjct: 7   NEIREKYLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKAYFTGKEVPPSKRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C+R      D++ VG+T RH TFFEMLGNFS G YFK+ AI  AW+ +T+   L   R
Sbjct: 67  QRCIRT----PDIERVGKTARHGTFFEMLGNFSIGDYFKKEAIPWAWEFVTEILKLPVDR 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++++Y+ED+EAF++W KI GL +++I+R+   DNFW +  TGPCGPCSEI+FD+GE   
Sbjct: 123 LWVSIYEEDDEAFEIWNKIVGLPSERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEKG 181

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P      + +R+IE WNLVF QF +  +     LP  +IDTGMGLERMAT++Q   +
Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERMATIMQGVDS 241

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D+ + +     ++  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGYV
Sbjct: 242 IFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I+  ++ E+ERF +
Sbjct: 302 LRRLLRRAARHGKLLGINDAFLYKVVDSVVENYGEAYPEIIERKDYIKRIIKVEEERFKE 361

Query: 361 TLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+GL +L   ++   L    +L G  AFKLYDT+G PLD+ ++IL   G   +D   +
Sbjct: 362 TIDQGLTILQDYINELKLQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEVG-IVVDEEGY 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + LE+QR RAR+      S   + I+ +L +    T+F+GY                  
Sbjct: 421 TKELEKQRIRARSRRKEDNSLWEQDIYSTLGDI--KTKFVGYT----------------- 461

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                 T G +S V AIV++ E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    + 
Sbjct: 462 ------TYGSNSKVLAIVKEEELVEEAEAGDDVSIILDITPFYAESGGQIGDKGVLENEN 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + +++ D +K  +  FVH   +ERG++     +   ID  +R   + NH+ATHLLH AL 
Sbjct: 516 VLIRVKDCKKIGDK-FVHIGTIERGLISVGDDVKARIDVVSRNNAARNHTATHLLHKALK 574

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       ++
Sbjct: 575 EILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKKIENRVNEKIYQSLNVYIEEKTYDE 634

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  GA AL   KY D+VRVV +       +S  LCGGTHV +T EI L  +VSES++ A
Sbjct: 635 ALKEGAVALFTEKYGDKVRVVRI-----DDYSVELCGGTHVKNTNEIGLFKVVSESAVGA 689

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG  A  +L  ++E LK  +  LK     +V ++E + +  +       + K
Sbjct: 690 GLRRIEALTGPYAIKYLEEKEEILKGASDLLKAQDKELVSKIEGLQQALKAKDKEIEQLK 749

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           +++          S   +  +  +   I + DS+ LK++ D L+ K+++ +++L   + E
Sbjct: 750 IKMASILADSLINSAISLDGIRVVVSKIEDYDSEALKALGDILKDKLKTAVVVLASSTLE 809

Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK----ADQA 888
            KA  + + T+D++    N   + + + K +  G GGGRP +AQ  G N +K     D+A
Sbjct: 810 -KAIFVGMATKDVVQKGINMGAVIKEACK-VSEGNGGGRPDIAQGTGKNPSKVKEALDKA 867

Query: 889 IAGVASFLK 897
           I  V   LK
Sbjct: 868 IEVVKEQLK 876


>gi|253583470|ref|ZP_04860668.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251834042|gb|EES62605.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 866

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/909 (37%), Positives = 518/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF+   H+   S+SLIP +D TL+ T +GMVPFK  F GQ++  Y  
Sbjct: 1   MLTGNQIRKEFIEFFEAKHHKHFESASLIP-DDATLLLTVAGMVPFKPYFLGQKEAPYPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AIQ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L+++V+  D+EA ++W +      ++++R+  ++N+W+   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVSVFTTDDEAEQIWIEKCNFPKERLVRLGEDENWWAAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A ++
Sbjct: 176 PAYGGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAMV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K+NN++ DL   LI+ + ++T  +Y  +     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKSNNFETDLLFPLIEEAAKLTNSQYGRDEEENFSLKVITDHSRAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ + RLLG++E  +  ++  + + M +AYP+L      I++ ++ E+
Sbjct: 296 GRGYVLRRILRRAVRHGRLLGHSELFLYKMVDKVVSMMENAYPDLRSNVEHIKKVVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F +TLD+G+ L++  +  L    I  L+G+V FKLYDT+G P ++ ++I   +G   I
Sbjct: 356 EKFSRTLDQGMQLVNQEIEKLKAANITKLDGEVTFKLYDTYGFPYELTEEICQEKG-IEI 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   + EQ+ +ARA    +     +       ++YGAT+F GY  L+ +  +   R
Sbjct: 415 SKEEFEAKMTEQKEKARAAREVVMEKGQDSFIEEFYDRYGATEFSGYTTLKDTGKLLSSR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                    G+         K  ++FD TPFY E+GGQ  D G 
Sbjct: 475 ------------------------DGK-------DNKKLMIFDVTPFYGESGGQAADIGM 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G+G   ++ DVQ K +GIF+H   V +G         L ID  NR   + NH+ATHLL
Sbjct: 504 ITGNGFEGKVIDVQ-KQKGIFIHTVEVLKGTPIEGEEYFLEIDEANRMATAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS +  + LRFD  H + +T+ EL+ +E+ VN+ IA+ + V    
Sbjct: 563 HEALREVLGSHVQQAGSFVNGERLRFDFNHYEAMTAEELEKVEELVNEKIAEAIDVKIAN 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++A  +GA AL G KY D VRVVSVE       S  LCGGTH+ + G+I L  I SE
Sbjct: 623 MSMDEAKKAGATALFGDKYGDVVRVVSVEGF-----SIELCGGTHIDNIGKIGLFKIESE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + I AGIRRIEA+TG+ A   +   +  LK++   +K  + N++ RVE++ E  ++    
Sbjct: 678 AGIAAGIRRIEAVTGKGAYKVVKDTEMLLKNVEKVVKSDEANLLDRVEKMVETIKENSKE 737

Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K     ++      +   I  V  +        + +L+ ++D ++ K+ + +++L 
Sbjct: 738 LEELKSRFTQIEAQALAENSEIINGVTVIMKTFKTRTADDLRKMIDYVKDKMTNTVVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             +   KA     VT++L  +  A +L + +A V+ GG GGGRP  AQ+GG +  K  +A
Sbjct: 798 SST--DKAIFAAGVTKELTSKVKAGNLVKEAA-VITGGNGGGRPDFAQAGGKDVTKIQEA 854

Query: 889 IAGVASFLK 897
           +  V   LK
Sbjct: 855 MDSVKETLK 863


>gi|219669584|ref|YP_002460019.1| alanyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219539844|gb|ACL21583.1| alanyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 875

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/908 (37%), Positives = 521/908 (57%), Gaps = 48/908 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +R  FL FF   GH +LPS+SLIP +DPTL+ T +GMVPFK  F  + +P +  
Sbjct: 1   MYTGNQLRDMFLNFFASKGHRILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPPFPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR      DL+ VG+T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L
Sbjct: 61  ATTSQKCVRT----PDLEVVGKTARHHTFFEMLGNFSFGDYFKAEAIPWAWEFVTEVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L+ITV+ EDEEA  LW + +G+S ++I      +N W+    GPCG CSEI+ D G
Sbjct: 117 PIDQLWITVHPEDEEAKNLWIEKTGVSPERIKY--DPENLWAAGPVGPCGYCSEIYVDLG 174

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +R++EIWNLVFMQ+ +        LPK +IDTGMGLER+A+V+Q
Sbjct: 175 ESRGCGKPDCALGCDCDRFLEIWNLVFMQYNRDESGLLTPLPKQNIDTGMGLERIASVMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF  +I    +++G+ Y     N V  +V+ DH R+ SF+++DGI P +EG
Sbjct: 235 GAASNFDTDLFLPIINKVSELSGIPYHDSPKNDVAMKVVADHTRAVSFMLSDGIRPGSEG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ YARLLG  +P +  +   +  +    YPEL + +  I   LR E++
Sbjct: 295 RGYVLRRILRRAIRYARLLGIDKPFLEQIFLIIQRDYSHHYPELKENENFILNHLRLEEK 354

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TL++G  +L   +  L +  + +L+G  AF LY+T+G P+++ +++L  +G++ +D
Sbjct: 355 NFQATLEQGTQILQDKVKTLQEAGETMLSGADAFYLYETYGFPVELTEEMLIEQGMS-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +FN A EE R  A+  S  + +           +  G T F+GY  L           
Sbjct: 414 METFNAAAEEHRRLAKEQSQQMKAVQESAAISEKAKALGTTPFLGYHEL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V+A+ + GE V++A  G +V +   ++PFYAE+GGQ+ D+G  
Sbjct: 463 ------------AAHTRVEALFRDGEEVKDAAEGDEVLIFLRESPFYAESGGQISDSGLI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                  ++ +V+K   G   H  ++ +G+L T   +   +D   R   + +HSATHLL 
Sbjct: 511 RSLRAEAKLIEVKKGVTGTVYHRFLLTQGVLHTGDEVEALVDEHLRLATARHHSATHLLQ 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +TPD LRFD TH   +TSAEL+ +ED +N  +  N+PV    M
Sbjct: 571 SALRAVLGEHVQQAGSLVTPDRLRFDFTHFSALTSAELQRVEDLLNKAVLANMPVAAEEM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A ASGA AL G KY D VRVVS+     G +S  LCGGTH+ +TG+I L+ I+SES
Sbjct: 631 SLDAAKASGATALFGEKYGDTVRVVSM-----GDYSLELCGGTHIHATGDIGLVKIISES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+ G  A  ++   ++++   A  LK    +++ R++ +  + + L+   
Sbjct: 686 GIGAGLRRIEAVAGAEALKYMRSLNDQILDAAQLLKAQPSDLLKRIQGLLVQVKDLEKEV 745

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +   ++   ++         +  V  ++  +S  D   L++  D L+ K++ G+++L G
Sbjct: 746 QQLNAKVAKSEVESLLQQVKDVEGVPVLAAKVSAQDMDTLRNTADLLKDKMKDGVLVL-G 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + E K + + VVT   L   +A  + +  AK+ GGGG GGRP MAQ+GG +  K  +A+
Sbjct: 805 AAVEGKVNWVTVVTPVGLRGLHAGQIIKEVAKITGGGG-GGRPDMAQAGGKDAAKLGEAL 863

Query: 890 AGVASFLK 897
             V   +K
Sbjct: 864 DQVPGIIK 871


>gi|259046499|ref|ZP_05736900.1| alanine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036664|gb|EEW37919.1| alanine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 914

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/920 (37%), Positives = 499/920 (54%), Gaps = 62/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + S IR  +L+FFQ+ GH++ PS+SLIP NDPTL++ NSG+   K  F G E P  
Sbjct: 35  MKKLSSSEIRQMYLDFFQEKGHKVHPSASLIPVNDPTLLWINSGVATLKKYFDGTETPEV 94

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG T RHHT FEM+GNFS G YFKE  I  AW+ LT  K
Sbjct: 95  PRITNAQKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEVIPWAWEFLTSEK 150

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  RLY+T Y +D E   LW    GL  D II +   DNFW +   GPCGP +EIF
Sbjct: 151 WLGLDPDRLYVTYYPKDPETKALWMDKVGLPEDHIIPV--EDNFWDIG-AGPCGPDTEIF 207

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF QF          LP  ++DTGMGLE
Sbjct: 208 YDRGEKYNNLAEDDPENYPGGENERYLEIWNLVFSQFNHMPDGTYPPLPHKNVDTGMGLE 267

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           R+ +V+Q+   N++ DLF  +I+  E ++   KY  +    V+ +VI DH+R+ SF I D
Sbjct: 268 RVVSVIQDTPTNFETDLFMPIIKQLESLSAGKKYNDSKELDVSFKVIADHIRAVSFAIGD 327

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGY++RR++RR++ + + LG     +  L+P +   M S YPE+ +    I+
Sbjct: 328 GALPSNEGRGYIIRRLIRRSVMHGQRLGIQGSFLTKLVPTVAQIMHSYYPEVTENMEFIQ 387

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + +E+ RF +T+  GL +L+ + +      +  L+G+ AFKLYDT+G P ++  +   
Sbjct: 388 KVIANEENRFQETIHDGLSILETIFADMKASNETTLSGENAFKLYDTYGFPYELTLEYAS 447

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G   +D   F   ++ Q+ RARA      S   +     L++    ++F+GY      
Sbjct: 448 DNGFT-VDEEGFQAEMQAQKDRARAARNTETSMNVQSAV--LRDITVESEFVGY------ 498

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                             +     ++KAIV   E+VE A      ++VFD+TPFYAE GG
Sbjct: 499 -----------------ASTTEEGVLKAIVVDDELVESAHKDAHAQLVFDRTPFYAEMGG 541

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G        +    +Q KKA      H +   G L+   +  L +D   R ++  
Sbjct: 542 QLADHGTIQDANGTVVANVLQVKKAPNGQPLHTVEVIGDLQVNAAYTLVVDASERAKIIK 601

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H +Q GS +TP GLRFD +H   +TS EL  +E  VN+ I  
Sbjct: 602 NHTATHLLHQALKDVLGTHANQAGSLVTPTGLRFDFSHFGQVTSEELAEMERIVNEKIWA 661

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            L VVT     EDA + GA AL G KY + VR+V++     G  S  LCGG HV++T EI
Sbjct: 662 GLEVVTVETTLEDAKSRGAMALFGEKYGNLVRMVNI-----GDWSIELCGGIHVANTQEI 716

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            L  IVSES I AG+RRIEA+T + A   L   +  LK +A  +K      VV RV  + 
Sbjct: 717 GLFKIVSESGIGAGVRRIEAVTSKEAFDLLSHHENLLKQVAGEVKAIQLDTVVERVATLG 776

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E ++     AK K ++   +++       ++   +F++  +   +  EL+ + D  ++K
Sbjct: 777 QELKEANGEIAKLKAKIMKSEVADVFNNVEEVNGTSFITVALENKEMDELRQLADTWRQK 836

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I ++   S + KA++L+ V++D   R   A D+ +  A  + GG GGGRP MAQ+G
Sbjct: 837 GASDIFVVGTASAD-KANLLVAVSKDANARGLKAGDIIKAIAPAIQGG-GGGRPDMAQAG 894

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N     QA   +  +L K
Sbjct: 895 GKNPAGIPQAFELLKEYLAK 914


>gi|294792102|ref|ZP_06757250.1| alanine--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294457332|gb|EFG25694.1| alanine--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 871

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/909 (37%), Positives = 500/909 (55%), Gaps = 55/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +
Sbjct: 1   MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD
Sbjct: 61  TTSQKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG 
Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ 
Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQG 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N++ DL   +I+A+ +  G+KY    N  V+ +VI DH R+ + LI+DG+LP+NEGR
Sbjct: 234 CKTNFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ER
Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEER 353

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID 
Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDH 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A++EQR RAR   +                               +K    D   
Sbjct: 413 EGFEAAMKEQRERAREARVK----------------------------EAAKVATPDITF 444

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L  +  ++     +S V  + +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +
Sbjct: 445 LKDEELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIV 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G   ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH 
Sbjct: 505 GPMGKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+
Sbjct: 565 ALKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ 
Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRIEAITG+ A          ++ +AS LK     +  R+ ++  E ++      
Sbjct: 680 IGSGVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEDRLHQVLAEAKETAKELE 739

Query: 776 KRKLQLN---VEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829
           + + +++     D+   K  I DV F++  +      EL+ + D    K+  SG++++  
Sbjct: 740 QIRKEVSAAGAADIVAGKVVIGDVEFVAAAVKASSIDELRDLADLGLDKLNGSGVVLVGA 799

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K  +A
Sbjct: 800 AMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMEA 858

Query: 889 IAGVASFLK 897
           +      LK
Sbjct: 859 LKAGGEALK 867


>gi|291087654|ref|ZP_06347045.2| alanine--tRNA ligase [Clostridium sp. M62/1]
 gi|291074356|gb|EFE11720.1| alanine--tRNA ligase [Clostridium sp. M62/1]
          Length = 868

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/901 (37%), Positives = 514/901 (57%), Gaps = 48/901 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT QKC+R
Sbjct: 1   MFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTTCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  RLY +V
Sbjct: 61  TG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPDRLYPSV 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y +D+EAF +W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE    G PG
Sbjct: 117 YQDDDEAFDIWNKEMGIPAERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPG 175

Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                + +RYIE+WN VF QF+         L   +IDTGMGLER+A ++Q+  + + ID
Sbjct: 176 CTVGCDCDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVIVQDVDSLFTID 235

Query: 248 LFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             K L+     + G +Y+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGYVLRR++
Sbjct: 236 TNKALLDRVCALAGKEYQKDHETDVSLRIVTDHIKSCTFMISDGIMPSNEGRGYVLRRLL 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + R LG     +  L   +       YPEL + K +I + L  E+++F KT+D+G
Sbjct: 296 RRAARHGRKLGIEGKFLAELSRTVIELSKDGYPELDEKKAMIFKVLTEEEDKFNKTIDQG 355

Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L+ + S + K  +++L+G+ AFKLYDT+G P+D+ ++IL  R L+ +D   F   ++
Sbjct: 356 LSILNEMESEMAKKGEKVLSGENAFKLYDTYGFPVDLTKEILEERDLS-VDEEGFAACMK 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           +Q+  ARA          +   +   +    T+F+GYD L                    
Sbjct: 415 KQKDAARAARKTTNYMGADVTVYQSIDPAVTTEFVGYDRLVH------------------ 456

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S +  +  + E+VE    GQ   ++  +TPFYA  GGQ  D G    +    ++
Sbjct: 457 -----ESEITVLTTEDELVEALTDGQNGTIIVKETPFYATMGGQQADIGVISTENGTFEV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D  K   G   H   V +G+ +    + LT++ +NR   + NHSATHLLH AL T+LG+
Sbjct: 512 KDTIKLQGGKVGHVGTVTKGMFKVGDQVTLTVNKENRELTARNHSATHLLHKALRTVLGT 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS +T D LRFD TH   +T  E+ ++E  VND IA +LPVVT IM+ E+A  +G
Sbjct: 572 HVEQAGSLVTKDRLRFDFTHFSAMTPDEIAAVEKMVNDEIAASLPVVTDIMSLEEAKKTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY + VRVV +     G  S+ LCGGTHV +T  I    IVSE+ I AG+RRI
Sbjct: 632 AMALFGEKYGESVRVVRM-----GDFSTELCGGTHVPNTSTISAFKIVSEAGIAAGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+T      +    +++L   A  +K +   +  +++ + +E + L   + K K +L  
Sbjct: 687 EALTSTGLMDYYHEMEQELHEAAKLVKSTPAALHDKLQAMLDELKALHSENEKLKSRLAN 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + L        +I  V  ++  +  VD   L+++ D L++K+  G++++  + ++ K ++
Sbjct: 747 DSLGDVLNQVKEINGVKLLAVRVDGVDMNGLRNLGDQLKEKLGEGMVVIASV-QDGKVNL 805

Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +   TE    +  +A +L +  A ++GGGG GGRP+MAQ+GG N    + A+      + 
Sbjct: 806 MASATEGAQKKGAHAGNLIKAIASLVGGGG-GGRPNMAQAGGKNPAGVEDALRKAEEVIA 864

Query: 898 K 898
           +
Sbjct: 865 E 865


>gi|315303256|ref|ZP_07873900.1| alanyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628368|gb|EFR96857.1| alanyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 879

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/916 (37%), Positives = 512/916 (55%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  +W+   GL+ + I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWRDKIGLTDEHIVEID--DNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDENDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ++G+KY  E  N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++++ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      + F+GY+       
Sbjct: 414 GLR-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSTFVGYNTTEYV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+    +V+E  +G + +++F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYIIHNDVLVDEVAAGSEAQLIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK          +V+ G+L T  ++ L++D   RR+   NH+
Sbjct: 508 ADKGTIQSETGLAHVEDVQKAPNKQNXXXVVVKEGVLTTGDTVKLSVDKVKRRETVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E  VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEKIVNEKIWEQIA 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      ++E +  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKAAYHFVTEQENILKHAANLLKTTTKETPQKIELLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  VN ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVRRENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGSALDYVSTWVKE 876


>gi|312143796|ref|YP_003995242.1| alanyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904447|gb|ADQ14888.1| alanyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 877

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/910 (38%), Positives = 524/910 (57%), Gaps = 50/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L+FF+   H +L S+ L+P NDP+L++ N+GM PFK  F G  +P +  +
Sbjct: 3   KTGDEIRQAYLDFFESKDHLVLDSAPLVPKNDPSLLWINAGMAPFKAYFDGSLEPPHPRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R     ND++NVG+T RHHT+FEMLGNFSFG YFKE+AI  AW+ +T+  + +
Sbjct: 63  ATSQKCIRT----NDIENVGKTARHHTYFEMLGNFSFGDYFKEKAIIWAWEFVTEVLEFE 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+IT+Y +D+EA  +W+K  GL  ++I+R+   +NFW +  TGPCGPCSEI +D+G 
Sbjct: 119 EDRLWITIYKDDDEAHDIWQKKVGLPEERIVRMGKKENFWQIG-TGPCGPCSEIHYDRGI 177

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                       EG+R++EIWNLVF Q+      E   LP  +IDTGMGLER+A++LQ  
Sbjct: 178 EFGDSSEDVLGGEGDRFLEIWNLVFTQYNYTEAGEYKELPNKNIDTGMGLERVASILQNT 237

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             N++ DL K +I      TG+ Y+ ++     +RVI DH+RS +  I+DG LP+NEGRG
Sbjct: 238 KTNFETDLIKPIIDEVVAKTGIAYQKDDESQTAYRVIADHIRSVAVAISDGALPSNEGRG 297

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YV+RR++RRA  Y R +G+TEP +  L+      +    P+L Q    +E  ++SE+E F
Sbjct: 298 YVIRRLIRRAARYGRKIGFTEPFLYELVKTTAEVVKGVAPDLKQQLAHVENVIKSEEESF 357

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            KTL++GL +L+  L  L     E+L+G  AF LYDT+G PLD+ +DI    G+  +D  
Sbjct: 358 LKTLEQGLNILEDFLVDLKAENKEVLSGKNAFILYDTYGFPLDLTKDIASEAGIM-VDEE 416

Query: 417 SFNQALEEQRSRARAHSLG--LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
            F   +  QR RAR         SG  +K++ S K +  A +F GY  L           
Sbjct: 417 GFEAEMAAQRKRAREAREETSFSSGEIDKLYASFKAEVEAVEFTGYHSL----------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S V  IV++ + ++    G++  +V  +TPFYAE+GGQLGD G  
Sbjct: 466 ------------TEESEVVGIVRENQKLQSIKKGEEANLVLHKTPFYAESGGQLGDKGII 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++ +   +A+ + VH   VE+G L+   S+   +    R+  + +HSATHLLH
Sbjct: 514 KNENFEAKVLNTFARAK-LPVHKVKVEKGELKRGDSVKAVVYDDRRKATARHHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L  +LG HV+Q+GS + P+ LRFD TH   ++  EL  IE  +N  + +N PV T   
Sbjct: 573 KTLKEVLGEHVNQSGSLVAPEKLRFDFTHFSALSDQELNEIEKRINKAVMENYPVETEEK 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A A GA AL G KY++ VRVV +     G +S  LCGGTHV +TG+I    I+SES
Sbjct: 633 ALEEAKAMGAEALFGEKYDEEVRVVKM-----GDYSLELCGGTHVDATGDIGPFKIISES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+ G+ A  +   + + L   A+ LK     V  R++++ +E ++LQ   
Sbjct: 688 GIAAGVRRIEAVVGEFALDYFNEKVDILNQAAAELKTEPDQVADRIKDLQKEKKELQKEL 747

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L              +A +N ++  +SE+D++ L++++D L+ K+ S +I+L  
Sbjct: 748 QSLKQKLAGSKKDELLDKLKNVAGINVLTAELSELDNQGLRNLIDQLKDKLDSAVIVLAS 807

Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K   +  VT DL++  F+A  +    A+V GGGG GGRP MAQ+GG   +K   A
Sbjct: 808 -KGQNKVVFVASVTADLIEQGFHAGKIISEVAQVAGGGG-GGRPDMAQAGGSKVDKTAAA 865

Query: 889 IAGVASFLKK 898
           +A V   +KK
Sbjct: 866 LAKVEEIIKK 875


>gi|217964349|ref|YP_002350027.1| alanyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|217333619|gb|ACK39413.1| alanyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|307571085|emb|CAR84264.1| alaS [Listeria monocytogenes L99]
          Length = 879

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++I+ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNIHRVSVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVEQLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGTALDYVSTWVKE 876


>gi|188586395|ref|YP_001917940.1| alanyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|205830160|sp|B2A5J7|SYA_NATTJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|179351082|gb|ACB85352.1| alanyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 878

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/910 (36%), Positives = 517/910 (56%), Gaps = 52/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FLEFF+   H +  S S+IP NDP+++   +GM P K  FTG++ P    +
Sbjct: 1   MRTHEIRKKFLEFFETKDHYVRKSYSIIPENDPSILLIGAGMAPLKPYFTGEKTPPSPRM 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR      D++ VG T RH TFFEMLGNFSFG YFK  AI   ++  T+   L 
Sbjct: 61  ATSQKCVRT----PDIEEVGITARHATFFEMLGNFSFGDYFKREAIFWGYEFCTEWLSLS 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ +VY +D+EA+ +W    G+  ++I+R+   DNFW +  TGPCGPCSEI +D+G 
Sbjct: 117 PEKLWASVYLDDDEAYDIWHDEVGIPHERIVRLGKEDNFWEIG-TGPCGPCSEIHYDRGA 175

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+EIWNLVF QF +  +     L + +IDTG GLER+A +LQ+
Sbjct: 176 EYGCDSPDCKPGCDCDRYLEIWNLVFTQFNRDEEGNYTTLKQKNIDTGAGLERLAVLLQD 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGR 297
             + Y+ID+ K ++    Q++G+ Y  +N    + R+I +HLRS +F++ DG+LPANEGR
Sbjct: 236 VPSIYEIDIIKPILDHVIQLSGVNYGEDNDKDISLRIITEHLRSVTFIVGDGVLPANEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA  + +LLG  +  M   +  +   M  AYPEL + +  I++ +  E++R
Sbjct: 296 GYVLRRILRRASRHGKLLGIKDTFMSDGVDLVIDIMKEAYPELEERREYIKKIVEIEEDR 355

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT+D+GL +L+  L ++ K     L G  AFKLYDT+G PL++ ++I+   G   +D 
Sbjct: 356 FNKTVDQGLGILNEFLENMNKQGKNTLEGSDAFKLYDTYGFPLELTREIVQENGYT-LDE 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + L  QR +AR          TE       +     +F GYD L            
Sbjct: 415 QGFQEELNRQREQARKAQQESEGMLTESNAMKQFQDQ-KVEFTGYDNLEQ---------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                         S +  I+  +  ++++E   G++V+++ + TPFY E+GGQ+GDTG 
Sbjct: 464 -------------ESQIIGIIDHKNDDLLKEVQEGEEVQILINPTPFYGESGGQIGDTGE 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D  R  + +         V    V  G LRT   +   +DYQ R+ +  NHSATH+L
Sbjct: 511 IFSDNGRAHVKNSSVNGYDQTVLQVKVTDGQLRTGDKVSGKVDYQRRKDIMKNHSATHML 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H+AL  ++G+HV Q GS + PD LRFD TH  P++  E+K IE  VN +I +N  V    
Sbjct: 571 HYALKKVVGAHVEQAGSLVAPDRLRFDFTHFAPLSEDEIKQIELEVNKLIRENSRVRVIN 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA AL   KY   VRV+ +        +  LCGGTH ++TGE+ L  I ++
Sbjct: 631 TDLEEAKELGAVALFEDKYEQEVRVIEIGP------AVELCGGTHATATGELGLFKIDNQ 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +S+ AG+RR+EA+TGQ A  +L  + E+++ +A  LK  +  VV + +E  E+++     
Sbjct: 685 TSVGAGVRRLEALTGQHALEYLDQKAEQIQDIAELLKTEENKVVEKTQEFLEDFKAKDKE 744

Query: 774 HAKRKLQL---NVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K Q+    V+DL      I+D   +++ +++ D+  L+ + + ++ K+ SG+++L 
Sbjct: 745 IEKLKNQIFTFKVDDLLAQSKDISDFKLVANQLNDFDADSLRDLSERVKNKLDSGVVVL- 803

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G S   KA  + +VT+DL+++  +A ++ +  AK+ GGGG GGRP MAQ+GG   +K ++
Sbjct: 804 GSSTNNKALFVAMVTKDLVEKGVHAGNIVKEVAKITGGGG-GGRPDMAQAGGKEPDKLNE 862

Query: 888 AIAGVASFLK 897
           AI  V + ++
Sbjct: 863 AIMKVETLVR 872


>gi|294785718|ref|ZP_06751006.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|294487432|gb|EFG34794.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 867

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/909 (36%), Positives = 508/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y        + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLGNIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGITVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYEKTEDEGKLLNLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                   K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 E-------------------------------TKDGKYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DV +K + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFVGKVLDV-QKQKDIFIHTVEFEKGIAEENKTYKLVVDVVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IE+ VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEKLSKIENIVNEKIREGIEVSISY 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            N E+A   GA  L G KY D+VRVV V        S+ LCGGTH+ + G+I L  I+SE
Sbjct: 623 HNIEEAKKLGAMMLFGDKYGDKVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIISE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      +   L  +   LK +  N+V +VE+  E  ++ +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I  V  +     +  +++L++++DA++ + +  II+L 
Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L+D+  A DL +  A+ + GG GGGR   AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLIDKIKAGDLVKKLAE-ITGGKGGGRADFAQAGGKDEEKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVRGIIE 863


>gi|238916897|ref|YP_002930414.1| alanyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
 gi|238872257|gb|ACR71967.1| alanyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
          Length = 880

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/908 (37%), Positives = 515/908 (56%), Gaps = 48/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +L+FF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRLYLDFFESKGHLKMKSFSLVPHNDNSLLIINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWSWEFLTETVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y +D+EAF +W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYQDDDEAFNIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG     + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  + L     ++ G+KY+ +    V+ RVI DH+RS +F+++DGI+P+NEGRGY
Sbjct: 241 SIFDVDTLQALRNKVCEMAGVKYKEDEKQDVSIRVITDHIRSVTFMVSDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + +  I + +  E+++F 
Sbjct: 301 VLRRLLRRAARHGRLLGIEGKFLSKLCETVIEGSKDGYPELEEKRTFITKVISEEEDKFN 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L+ + + L    + +L+G  AFKLYDT+G P+D+ ++IL  + +  ID   
Sbjct: 361 KTIDQGLSILNDMEAELASKGENVLSGADAFKLYDTYGFPMDLTKEILEEKNIT-IDEAG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN A+EEQR +AR           +   +   +    + F+GYD L              
Sbjct: 420 FNAAMEEQRVKARNARKVTNYMGADATVYDEIDPAITSAFVGYDKLTN------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + E+V+    G K  V+ D+T FYA  GGQ GD G     
Sbjct: 468 -----------ESEITVLTTEEEVVDALSEGDKGTVIVDETVFYATMGGQEGDKGVIKTS 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +    K   G   H   + +G+++   +  + +    R     NHSATHLL  AL
Sbjct: 517 EGEFAVETTIKLKGGKIGHVGTMTKGMMKVGDTATMEVSPAYRADTCKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS + PD LRFD TH + +T  E+  +ED VN+ IA+ +PVVT +M  E
Sbjct: 577 RIVLGDHVEQKGSYVDPDRLRFDFTHFQSMTKEEIAKVEDIVNEKIAEAIPVVTDVMTIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY ++VRVV++     G  S   CGGTHV++T  I L  IVSE+ + 
Sbjct: 637 EAKKTGAMALFGEKYGEKVRVVAM-----GDFSKEFCGGTHVANTANIRLFKIVSEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    ++ ++  A   K     +V ++  + +E + L   + K 
Sbjct: 692 AGVRRIEALTDKGVIKYYAELEKTIEEAAKAAKAEPVQLVKKIAAMNDEIKSLMSENEKL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L    L        ++  V +++  +  VD  EL+++ D L+ +I SG++++V    
Sbjct: 752 KAELANNALGDTAGDIKEVNGVKYIATKVDGVDMNELRNLGDKLKGEIGSGVVVIVSAQG 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K SV+ + T+D++ +  +A +L +  A ++GGGG GGRP+MAQ+GG N    D+ IA 
Sbjct: 812 ADKVSVIAMATDDVIAKGAHAGNLIKALAPIVGGGG-GGRPNMAQAGGKNPAGIDELIAK 870

Query: 892 VAS-FLKK 898
           V    L++
Sbjct: 871 VPDTILEQ 878


>gi|154686881|ref|YP_001422042.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|205829982|sp|A7Z735|SYA_BACA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|154352732|gb|ABS74811.1| AlaS [Bacillus amyloliquefaciens FZB42]
          Length = 878

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/915 (37%), Positives = 524/915 (57%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKHLTSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   L +TV+ EDEEA+ LW +  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGEKYGNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q+ + N+D DLF  +I+A+E+++G  Y  +       +VI DH+R+ +F ++DG 
Sbjct: 234 MVSVIQDVSTNFDTDLFMPIIEATERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ LG + P M  L+P +   M + YPE+ + +  I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTLGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+    +    I++G   FKLYDT+G P+++ ++     
Sbjct: 354 IKTEEERFHETLNEGLAILSDVIKKEKEKGSGIISGKDVFKLYDTYGFPVELTEEY-AED 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
               +D   F   +E+QR RAR     +GS   +    +L++    + F+GY  ++    
Sbjct: 413 EQMTVDHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSAVK---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + V  ++  G+++ EA  G  V+++ D+TPFYAE+GGQ+
Sbjct: 467 -------------------AEAKVIELLHDGQLISEAHEGDTVQILLDKTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +   + I DV+K   G  VH   V+ G ++   S+   ++ Q R  +  NH+
Sbjct: 508 GDRGVLRSEQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I +++P
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWESIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A   GA AL G KY D VRVV V     G +S  LCGG HV++T EI L 
Sbjct: 628 VAIDLKPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK +  +V  R++ +  E +
Sbjct: 683 KIVSESGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKSNVKDVPKRIQSLQAELK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           + Q  +     +L   +          I  V  ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 EAQRENESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  E K ++   VT+DL+++  +A  + + +A+V GGGG GGRP MAQ+GG + 
Sbjct: 803 VIILGAVQNE-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVCGGGG-GGRPDMAQAGGKHP 860

Query: 883 NKADQAIAGVASFLK 897
            K ++A+A    ++K
Sbjct: 861 EKLEEALASAVDWIK 875


>gi|162453400|ref|YP_001615767.1| hypothetical protein sce5124 [Sorangium cellulosum 'So ce 56']
 gi|205830212|sp|A9FRF5|SYA_SORC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161163982|emb|CAN95287.1| alaS [Sorangium cellulosum 'So ce 56']
          Length = 917

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/926 (36%), Positives = 499/926 (53%), Gaps = 52/926 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R TFLEFF + GHE++PS+ L+P NDPTLMF N+GMV FK++FTG+++  YQ   
Sbjct: 8   SSDLLRRTFLEFFAQRGHEIVPSAPLVPQNDPTLMFVNAGMVQFKDVFTGKDRRPYQRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+NVG T RH TFFEMLGNFSFG YFKE AI  AW+LLTK +D+  
Sbjct: 68  SSQKCIRISGKHNDLENVGVTARHQTFFEMLGNFSFGDYFKEDAIAFAWELLTKVYDISP 127

Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL +T+Y        D+EA  +W+K++G   D+I+R+   DNFW+M + GPCGPCSEI 
Sbjct: 128 SRLVVTIYNGEGGFPADDEAAAIWRKVTGFGDDRILRLGLADNFWTMGDVGPCGPCSEIH 187

Query: 177 FDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQ-QNKQERFILPKMSIDTGMGLERM 233
           F  G+       G     +G  + EIWN VFMQ+E+ +       LP  SIDTGMGLER+
Sbjct: 188 FFHGKEPDVARFGEEPRIDGTGWTEIWNNVFMQYERAEKDGPLVPLPAPSIDTGMGLERL 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290
           A+VLQ  T+NYD DL + L+  + +++G  Y     ++ V+ RVI DH R+++FLIA+G+
Sbjct: 248 ASVLQGVTSNYDTDLLRGLVDKAAELSGKPYSGGSADDDVSMRVIADHARTAAFLIAEGV 307

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P  + R YVLRR+MRRA+ +   LG   P +  +   +   MG  YPEL   + LI   
Sbjct: 308 MPEKQRREYVLRRVMRRAIRHGHRLGIDRPFLHEVALEVVRRMGETYPELRDRRELIARV 367

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              E+ RF  TL RG+ +LD     +    +  L    A  LY T+G PLD+ Q I    
Sbjct: 368 TEDEEVRFRSTLKRGMKILDERFDEMRSSGERTLPAAAAADLYTTYGFPLDLTQVISAES 427

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSK 467
                   +        +    A      +   +      + K      F GY+   G  
Sbjct: 428 NFDVDVQGA----EAIIKGAGEADGPIDPTAAVDPAHREARAKLAQPVVFTGYEHEEGDS 483

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            +    +V  Q             V+A+      VE A +G  VE+V  +TPFYAE+GGQ
Sbjct: 484 EIVAIVRVEIQGEGDRAR-----KVRAL------VERAEAGAAVEIVVRETPFYAESGGQ 532

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G    DG R+++ D QK   G+ VH  +V  G L     + L +D+  R     NH
Sbjct: 533 VGDVGEVTADGARVEVKDTQKPLAGLVVHEGVVHEGALAVGQRVHLAVDHAARSATRRNH 592

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATH+LH AL  +LG H  Q GS + PD LRFD TH++P+T  E+  IED VN+ +  N 
Sbjct: 593 SATHVLHWALRKVLGEHAQQKGSRVGPDVLRFDFTHNRPLTREEISRIEDLVNEKVLTNA 652

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T I+  ++A   GA A+   KY D VR++++           LCGGTH  + G+I L
Sbjct: 653 KVTTEILAMDEARRRGAMAIFEEKYGDTVRMLTMTP-----EVVELCGGTHACALGDIGL 707

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I SE  + AG+RRI A TG  A ++  G + +L       K   G++  ++ +I    
Sbjct: 708 FKITSEGGVAAGVRRILASTGLNALAYARGVEAELARARQVAKAQGGDLAEKIGKIVAHE 767

Query: 768 RKLQLIHAKRKLQLNVEDLS---------------CHKIADVNFMSHII-SEVDSKELKS 811
           R+L+   A+ + ++                        I  +  ++  +    +   L+ 
Sbjct: 768 RELEKKVAELERRILEGAGPAQGGGGGGIDAMLDGARDIGGIKVLARRVPDGTNPGALRD 827

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           + + L+ K+     +L+G +   KA + +++++   +R  A +L +  A+++ GG GGGR
Sbjct: 828 LAEKLRDKLGDRSAVLLGAAVGDKAQLAVMLSKSATERLKAGELIKPIARIV-GGSGGGR 886

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLK 897
           P MAQ+GG +  + D AIA + + ++
Sbjct: 887 PDMAQAGGTDVAQLDAAIAALYTEVE 912


>gi|290893863|ref|ZP_06556841.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|290556580|gb|EFD90116.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
          Length = 879

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKMLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++I+ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVEQLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGTALDYVSTWVKE 876


>gi|15604686|ref|NP_221204.1| alanyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E]
 gi|6226166|sp|Q9ZCA4|SYA_RICPR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3861381|emb|CAA15280.1| ALANYL-TRNA SYNTHETASE (alaS) [Rickettsia prowazekii]
 gi|292572518|gb|ADE30433.1| Alanyl-tRNA synthetase [Rickettsia prowazekii Rp22]
          Length = 877

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/890 (46%), Positives = 557/890 (62%), Gaps = 37/890 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPDNDPSLMFVNSGMVQFKNVFTGQEKRSYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL++VG T RHHTFFEMLGNFSFG YFKE+AI   WDLLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLEHVGYTARHHTFFEMLGNFSFGDYFKEQAIYYTWDLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T+Y  D+ A   WKKI+GL  D+IIRI TNDNFWSM +TGPCGPCSEIFFD GE 
Sbjct: 125 DKLYVTIYHTDDPAASYWKKIAGLKDDRIIRIKTNDNFWSMGDTGPCGPCSEIFFDHGEE 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E  +R+IEIWN+VFMQ+EQ NK+ R  LPK SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDENCDRFIEIWNMVFMQYEQINKETRIELPKKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K +G    ++RVI DHLR+SSFLIADGI+P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKIKVDGEAKFSYRVIADHLRASSFLIADGIIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRAM +A +LG  EPLM  LLP L   MG+ YPEL  A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRAMRHAHMLGAKEPLMYKLLPKLVDLMGNIYPELKIAESFISSILEQEEIRFKTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +  +D   F + 
Sbjct: 365 LERGLKLLTEETKTLTKGSKLSGEVAFKLYDTYGFPLDLTEDILKNRDIT-VDHKGFEEL 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE+YG+T+F+GY L                   
Sbjct: 424 MLTQKERARKSWLGSGESKTDQLWFDIKEQYGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V+       +  ++ +QTPFY E+GGQ+GD G     G  
Sbjct: 465 ----NEAECKIIALIKNNNLVDNIQEINTQFLLIANQTPFYGESGGQMGDIGMIFSQGSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +  L I+ + R+ L I+HSATH+LH  L  I
Sbjct: 521 IEVIDTFKYLRSIIVHKCILKKGKINIGENANLNINIRYRQNLRIHHSATHILHAVLHKI 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +T   LRFD+ HSK IT+ E+  IED VN+II  N  V T +M  EDAI
Sbjct: 581 LGKQVIQKGSLVTSTYLRFDINHSKAITNQEITLIEDQVNEIIRNNHEVTTTVMFTEDAI 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I+SES+I AG+
Sbjct: 641 KQGAIALFGEKYDSEVRVVKI-----GETSLELCCGTHVKRTGDIGSFKIISESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  +D  LKS+ S  K ++  ++ +V  I E  ++L+    K    
Sbjct: 696 RRIEAVCGEFVIKLIRERDSLLKSIESSFKTNKNELITKVINILERNKELEKELEKAHLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +        +I  +  +   +  +++K L+   + L KK+++ I++ +    + K
Sbjct: 756 SLDLSIEQIKKQTKEITGIKLLYKEVGNINNKILRQAAENLTKKVENLIVVYIAHGVD-K 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            S+ + V++ + D+FNA  +A+  +  LGG GGGG+  +AQ+GG +    
Sbjct: 815 LSITVAVSKAITDKFNAGIIAKELSLFLGGSGGGGQASIAQAGGNDIINL 864


>gi|116872933|ref|YP_849714.1| alanyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123461085|sp|A0AIV3|SYA_LISW6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116741811|emb|CAK20935.1| alanyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 879

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 514/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  +W++  GLS + I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWREKIGLSEEHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPTFGDDTSDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY  N  N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHNQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++++ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      ++F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTAKSEFVGYNATEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V+E  SG+  +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYIIQDDALVDEVASGKTAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE++  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHTANLLKATTKEAPQKVEQLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  E K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGE-KVNLISAVSEDAIKAGYHAGKLLKEVATKC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++ +K+
Sbjct: 861 AELATALDYVSTCVKE 876


>gi|257462579|ref|ZP_05626989.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|317060231|ref|ZP_07924716.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313685907|gb|EFS22742.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 866

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/910 (35%), Positives = 503/910 (55%), Gaps = 58/910 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF+   H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIVWSWEFVTEVLGL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+  D+EA K+W +      ++I+R+  ++N+W+   TG CGPCSEI  D G
Sbjct: 116 PKDKLWVTVFTTDDEAEKIWIEECHFPKERIVRMGESENWWAAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     RYIEIWNLVF ++ +        LPK +IDTG GLER+A ++
Sbjct: 176 PAYGGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K NN++ DL   L++ + ++T   Y        + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKENNFETDLLFPLVEEAGRLTNSTYHENPEKDFSLKVITDHSRAVTFLIHDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLG  E  +  ++  +  +   AYP+L      I++ ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGQKELFLYKMVKKVVEQFAVAYPDLAANMENIQKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  ++   +     L+G++ FK+YDT+G P ++ ++I   +G   +
Sbjct: 356 EKFSNTLDQGIQLVNEQIALALQAGKTKLDGEITFKMYDTYGFPYELTEEICHEKG-IAV 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F + +EEQ+ +ARA    +     +       + +G T+F GY   +    +   R
Sbjct: 415 SQEEFLEKMEEQKEKARAARAVIMEKGQDSFIEKFYDTHGVTEFTGYHSSQEKAKLLNVR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                                + ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 T-------------------------------REDGTLLLIFDKTPFYAESGGQVGDRGM 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  + ++ DV KK + IF+H      G L+      L +D + R  +S NH+ATHLL
Sbjct: 504 IFSNAFQGKVLDV-KKQKEIFIHVVESISGELKEGEECSLEVDMKYRAAVSKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  + LRFD +H + +T  ++K +E+ VN+ I++ + V    
Sbjct: 563 HKALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIKLVEERVNEKISEAIAVEISH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A A GA  L G KY D VRVV V        S+ LCGG HV + G I L  IVSE
Sbjct: 623 KSMEEAKACGAMMLFGDKYGDTVRVVDVPGF-----STELCGGIHVENIGHIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A   +    E L+  A+ LK     +V +VE++ +E ++    
Sbjct: 678 GGIAAGVRRIEAKTGYEAYRFVEENMEILQKSATLLKTESSLLVEKVEKVLQEEKEKSRE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K ++  ++         ++A          +    +L+ ++D ++ K ++ I++L 
Sbjct: 738 IASLKEKIAKQEAEALYSHMLEMAGAKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             S+  K S  + V++ L  ++ A +L ++ A+ + GG GGG+P  AQ+GG +  K  +A
Sbjct: 798 STSE--KLSFAVGVSKALTSKWKAGNLVKILAE-ITGGKGGGKPDFAQAGGKDKTKIAEA 854

Query: 889 IAGVASFLKK 898
           +  V   +++
Sbjct: 855 MEAVKKAIQE 864


>gi|303238701|ref|ZP_07325234.1| alanyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302593820|gb|EFL63535.1| alanyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 879

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/906 (36%), Positives = 535/906 (59%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  LPS  L+P NDP+L+  NSGM P K  FTG+E+P  + V T
Sbjct: 6   LNELRERYLKFFEGKGHLRLPSFPLVPQNDPSLLLINSGMAPLKPYFTGKEEPPRRRVAT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFITEDLKMPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++T+Y++D+EAF++W K  GL  ++I+R+   DNFW    TGPCGPCSEI++D+G   
Sbjct: 122 KLWVTIYEDDDEAFEIWNKDVGLPPERIVRMGKKDNFWEHG-TGPCGPCSEIYYDRGVER 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +R+IE WN VF QF +  +     LP  +IDTGMGLER+A + Q+  
Sbjct: 181 GCGKPDCKVGCECDRFIEFWNNVFTQFNKDEEGNYTKLPNPNIDTGMGLERLACISQDVE 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  +++++   +   +KY  ++   ++ RVI DH+RS++ +++DG++P+NEGRGY
Sbjct: 241 NLFEVDTVRNVLEYVCKTADVKYHESDKTDISIRVITDHIRSTTMMVSDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +P +  +   +  E   AYPEL + +  I++ +R E+E+F 
Sbjct: 301 VLRRLLRRAARHGKLLGINKPFLYDISMIVINESREAYPELEEKREYIQKVIRIEEEKFD 360

Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            T+D+GL++L+  +        E + G +A++L+ T+G P+D+ ++I    GL  ID   
Sbjct: 361 LTIDQGLIILNKYIEETKAKNAETITGTMAYELHSTYGFPIDLTREISEENGL-AIDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   + E R   R   L   S       +S  +K   +QF+GY                 
Sbjct: 420 FKAKMLEHRIIGREDYLSKQSSAWSDDIYSSLDKNLKSQFVGYSE--------------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                   N   + V  I++  E+V+ A  G+ V V+ D+TPFYA +GGQ+GD G   G+
Sbjct: 465 --------NVAEAKVLYIIKNDEVVQTAKEGESVTVILDKTPFYAASGGQVGDEGYIEGN 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            +R++I D +K  +G ++H  +VE+G L T   +  +ID + R  ++ NH+ THLL  AL
Sbjct: 517 DVRIRIEDCKKTDDGKYLHTGVVEKGTLETGADVKASIDIRRRTSIARNHTTTHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS + PD LRFD  H   +TS E+  +E  VN+ I ++L V  + M  +
Sbjct: 577 RNVLGTHVHQAGSLVEPDRLRFDFAHFSAMTSEEIAKVESEVNEKILESLIVDVKEMPID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY + VRVV +       +S   CGGTH+ ST +   + I+SES + 
Sbjct: 637 EAKKLGATALFGEKYGNIVRVVKIA-----DYSMEFCGGTHLKSTSQAGFVKILSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG+ A ++L  +++ +  ++S LK S  + V R+E +  E +  Q    + 
Sbjct: 692 AGVRRIEALTGEAALAYLHEREKLINEVSSALKSSPQDSVKRIEAMAIELKSAQKEIEQL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L    L     +  ++  V  +     ++D + L++  D ++ K+ SG+++L G   
Sbjct: 752 RSKLVSGSLDEVFSNAVEVKGVKVVKARFDQLDMEALRNTGDTIRNKMGSGVVVL-GSGY 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K S +++ T+D++ +  ++ ++ +  AK+ GGGG GGRP MAQ+GG + +K D+AI  
Sbjct: 811 EGKVSFVVMATKDVVAKGIHSGNIIKEVAKIAGGGG-GGRPDMAQAGGKDLSKIDEAIDY 869

Query: 892 VASFLK 897
               ++
Sbjct: 870 SIKVIE 875


>gi|297620478|ref|YP_003708615.1| Alanyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297375779|gb|ADI37609.1| Alanyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
          Length = 870

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/907 (38%), Positives = 522/907 (57%), Gaps = 51/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  F+ +F++NGH  +PSS ++P +DPTL+F N+GM  FK+IF G+    Y+  
Sbjct: 1   MNTQEIRRKFINYFRENGHTHVPSSPILPHDDPTLLFINAGMNQFKDIFLGKSVRDYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R GGKHNDL+NVG T RH TFFEMLGNFSFG YFK+ AI+ AW++ T  F+LD
Sbjct: 61  VTSQKCIRVGGKHNDLENVGHTLRHLTFFEMLGNFSFGDYFKKEAIRFAWEVSTTVFELD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R++ TV+ ED+EA+++WK+   +  +KI R     NFWSM +TGPCGPCSE+ +D+G 
Sbjct: 121 PERIWPTVFREDDEAYEIWKEY--VPEEKITRFDEKQNFWSMGDTGPCGPCSELLYDRGP 178

Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P   E+ ERY+E WNLVFMQ+ +  +     LPK SIDTG GLER+ ++  + 
Sbjct: 179 KYGNAKTPLEDEKEERYMEFWNLVFMQYNRDEEGVMHPLPKPSIDTGSGLERVVSIKMDV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGR 297
            + YD D+ + LI   E+++G+ Y+G +       RVI DH+R  +F IADG+ P+N  R
Sbjct: 239 ESVYDTDVLRALITRVEEISGIGYDGADKEKAPAFRVIADHIRCLAFAIADGVQPSNVDR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+++RRA+ Y R+LG   P +  L+P L   MGS YPEL Q++  I E L +E+E 
Sbjct: 299 GYVLRKVLRRAVRYGRMLGLDRPFLADLVPLLIELMGSDYPELKQSENRIGEILTTEEEN 358

Query: 358 FGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           F +TL RG  +L+ ++     +   + G+ AFKL DT+G PL+ +  I     L  +D  
Sbjct: 359 FIRTLRRGGNILNQIIDEAKKEHRQITGEEAFKLKDTYGFPLEEILLIALDDELE-VDTK 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F +  EE + R+R          +E    +L E + + +F+GY+               
Sbjct: 418 RFIELEEEAKERSRKTRKSTQQLASE----NLFEGFASCEFLGYEETE------------ 461

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V AI+     V++  +GQ+  +V D+TPFYAE GGQ+GD G   G
Sbjct: 462 -----------AEGKVAAIIVDNAFVDQLEAGQEGMIVLDRTPFYAEKGGQVGDKGLLTG 510

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +     ++D Q   +GI  H   +ERG +R +  L+  +D + R+ ++ +H+ATHLLH A
Sbjct: 511 ENSLFHVSDCQSPYKGIIAHLGKLERGAIRLKDPLMARVDLERRQSIANHHTATHLLHWA 570

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS + PD LRFD +H K +T  E++ IED VN  I +N+ V +  ++ 
Sbjct: 571 LCKVLGDHVKQAGSVVAPDRLRFDFSHHKGLTQKEIRDIEDLVNAKIRENIAVKSYELSY 630

Query: 657 EDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           E+AI         G KY++ VRV+ +       +S  LCGGTHV   G I L  I  E S
Sbjct: 631 EEAIQREEIKQFFGDKYDNIVRVIDI------DYSKELCGGTHVKQLGSIGLFRIAKEGS 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG  A      ++  L S+A  LK     ++ R+  + EE ++L     
Sbjct: 685 IAAGVRRIEAVTGSWAEQRSREEENLLLSIADSLKTQPQKLIQRINSLLEENKELAQELK 744

Query: 776 KRK---LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K   L+  V DL     ++  + F++  ++ + S E++ + D     ++SG+++L   
Sbjct: 745 TLKSAHLKNIVADLINKAEEVQGIRFIAQEVA-LSSDEMRQLADDAVNALESGVVVLAA- 802

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S + +  ++  V++D++D+   A DL +  A ++GGGG GG+ H AQ+GG    K  QA+
Sbjct: 803 SLDGRCQLMARVSDDMIDKGIKASDLIKTLAPIIGGGG-GGKAHFAQAGGKTPEKISQAL 861

Query: 890 AGVASFL 896
           + V + L
Sbjct: 862 STVRTLL 868


>gi|78044932|ref|YP_359396.1| alanyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123576855|sp|Q3AEN8|SYA_CARHZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|77997047|gb|ABB15946.1| alanyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 874

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/908 (37%), Positives = 529/908 (58%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH++LPS+SLIP NDP+L++T +GMVPFK  FTG   P  + V
Sbjct: 1   MLAREIREKFLKFFESKGHKILPSASLIPANDPSLLWTAAGMVPFKPYFTGAAVPEVRRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+++VGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   + 
Sbjct: 61  TTCQKCLRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWEFVTEHLGIS 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LYIT+Y +D+EAF +W  + G+ A++I R+  + NFW +   GPCGPCSEI+ D G 
Sbjct: 117 KDKLYITIYLDDDEAFDIWHNVVGVPAERITRLGKDTNFWEIG-VGPCGPCSEIYVDLGP 175

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P    + +  R++EIWNLVF+QF +  +     L +  IDTGMGLER+A+VLQ 
Sbjct: 176 EKGCGSPDCGVACDCGRFLEIWNLVFIQFFRDEQGNYTPLEQKGIDTGMGLERVASVLQG 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +N+D D+F+ ++  + Q+ G+KY  +    V  +VI DH R+ +F I DG LP+NEGR
Sbjct: 236 VPSNFDTDIFREIMDYAAQILGVKYGYDEKVDVALKVIADHTRAITFAITDGALPSNEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + RLL   EP +  +   +  +MG  YPEL +      + ++ E+E+
Sbjct: 296 GYVIRRLLRRALRFGRLLDREEPFLHLVAAKVIEQMGDVYPELREKAEHTLKIIKLEEEK 355

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL++GL +L  ++  L ++    + G +AFKLYDT+G P+++ ++I   +G   +D 
Sbjct: 356 FRETLNQGLSMLAELMERLTQEGKKEIPGHLAFKLYDTYGFPIELTKEIAEEKGFT-VDE 414

Query: 416 ISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F Q +EEQR RAR     +    T +     LKE+ G   F+GY+ L           
Sbjct: 415 EGFKQQMEEQRRRAREAREDVDYLSTRDAFLKQLKEELGEVTFVGYEKL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ + AI++ G+ VE   + ++ E++   TPFY E GGQ+ D G  
Sbjct: 464 ------------SESTEIIAIIKNGQKVESLAAEEEGEIITRVTPFYPEGGGQVADKGEI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +GDG +L + DV+K      +H   V  G ++      L +D   R   + NH+ATHLLH
Sbjct: 512 LGDGFKLSVLDVEKPLSDFILHKVKVVEGSVKVGDKATLMVDETTRMSTARNHTATHLLH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS +TP+ LRFD TH + ++  +L+ IE+ VN+ I +NL V     
Sbjct: 572 KALKMVLGEHVNQAGSLVTPERLRFDFTHFEGVSDEDLRKIENIVNEAILRNLLVQIDYT 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A  +G  AL   KY D VRVV +     G  S+ LCGGTHVSSTG I    I+ ES
Sbjct: 632 TLDEARKAGVIALFDEKYGDLVRVVKI-----GEFSAELCGGTHVSSTGVIGFFKILGES 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           SI AG+RRIEA+TG  A  ++   ++ L+      K +   +  ++    +  ++     
Sbjct: 687 SIGAGVRRIEALTGLGALEYVRSLEDTLQKATEPYKCTFAELPEKISNTLKTLKEKDREI 746

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                ++   ++     S  +I  V  +S II   D + L+   D ++  + + +++L G
Sbjct: 747 EALMQKIASIEVKSLLNSVREIKGVKVLSAIIDGADMEGLRKAYDVVKASLANYVVLLAG 806

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + K+ K + L  V ++L D+++A +L + +AK+ GGGG GGRP MAQ+GG N  K  +A+
Sbjct: 807 V-KDGKVNFLAGVDKNLTDKYHAGELVKEAAKIAGGGG-GGRPDMAQAGGKNPEKVKEAL 864

Query: 890 AGVASFLK 897
             + ++++
Sbjct: 865 QVIDAYVQ 872


>gi|311069223|ref|YP_003974146.1| alanyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310869740|gb|ADP33215.1| alanyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 878

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/915 (37%), Positives = 521/915 (56%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKHLTSAEVRQMFLNFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +TV+ ED+EA++LW +  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDEELLSVTVHPEDDEAYELWAQKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDPADSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGI 290
           M +V+Q    N+D DLF  +I+A+E ++   Y  +++ N   +VI DH+R+ +F ++DG 
Sbjct: 234 MVSVIQNVPTNFDTDLFMPIIKATETISSEAYGQDDVKNTAFKVIADHIRTVAFAVSDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ + +  I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTININRPFMYDLVPVVAEIMVDFYPEVKEKEEFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  ++         +++G   FKLYDT+G P+++ ++     
Sbjct: 354 IKTEEERFHETLNEGLAILSEMIKKEKDKGSSLISGTDVFKLYDTYGFPVELTEEY-AED 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
               +D   F + +E+QR+RAR     +GS   +    +L++    + F+GY   +    
Sbjct: 413 EQMKVDHKGFEEEMEKQRARARNARQDVGSMQVQG--GALRDVTVESTFVGYTNTKSD-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S V  ++Q GE++EEA  G+ ++++ ++TPFYAE+GGQ+
Sbjct: 469 ---------------------SSVVELLQDGELIEEAHEGETIQILLNETPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G        ++ITDVQK   G  VH  +VE G L+  M +   ++   R  +  NH+
Sbjct: 508 GDKGYLRSAQAVVRITDVQKAPNGQNVHEGLVESGTLQKGMHVTAEVEDHMRSGVIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I +++P
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEVIVNEKIWESIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A   GA AL G KY D VRVV V       +S  LCGG HV +T EI L 
Sbjct: 628 VSIDLKPINEAKEMGAMALFGEKYGDIVRVVQVGG-----YSLELCGGCHVKNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TGQ A   +  Q   LK +A  LK +  +V  RV  +  + +
Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYLEMNSQIGLLKQVAGELKTNVKDVPKRVAALQADLK 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           + Q  +     +L   +          I+ V  ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 EAQRENESLLAKLGNAEAGAILSNVKDISGVKVLAEKVNAKDMNHLRTMVDELKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L  +  + K ++   VT+DL+D+  +A  L + +A++ GGGG GGRP MAQ+GG   
Sbjct: 803 VVVLGAVQND-KVNISAGVTKDLIDKGLHAGKLVKQAAEMCGGGG-GGRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            K   A+  V  ++K
Sbjct: 861 EKLQDALTSVEEWVK 875


>gi|282890190|ref|ZP_06298720.1| hypothetical protein pah_c014o045 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499847|gb|EFB42136.1| hypothetical protein pah_c014o045 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 876

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/909 (39%), Positives = 508/909 (55%), Gaps = 48/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL +F+++GH ++ SS + P +DP+L+FTN+GM  FK++F G+    Y   
Sbjct: 1   METQRIRRQFLNYFKEHGHRVISSSPVFPHDDPSLLFTNAGMNQFKDVFLGKSARDYHRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R GGKHNDL+NVG T+RH TFFEMLGNFSFG YFK  AIQ AWD+ T+ F  D
Sbjct: 61  TTSQKCIRVGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKAEAIQFAWDISTQVFGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            + ++ TV+ +DEEAF+LW +   + A KI R    DNFWSM E GPCGPCSE+++D+G 
Sbjct: 121 PQHIWPTVFRDDEEAFELWTRY--VPASKITRFGEKDNFWSMGEVGPCGPCSELYYDRGS 178

Query: 182 CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              P   P     GERY+E WNLVFMQF +        LP+ SIDTG G+ER+  +    
Sbjct: 179 KYGPANNPSEDVTGERYLEFWNLVFMQFNRLEDGSLSPLPRPSIDTGAGIERVVGLKMGV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGR 297
            + +  D+ + LI  +EQV    Y+  NI       VI DHLR  +F IADG+ P+N  R
Sbjct: 239 DSVFGTDVLRELIAQTEQVFNKSYDPTNIQTAPAFHVIADHLRCLAFAIADGVQPSNVDR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+++RRA+ Y R LG   P +  +LP L   MG  Y EL+QA+  I E L  E+E 
Sbjct: 299 GYVLRKVLRRAVRYGRSLGMDTPFLADILPRLVATMGEDYKELVQAQQRIAEILTVEEEA 358

Query: 358 FGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           F +TL RG  +L+ ++         ++GD AFKL DT+G PL+ ++ I     L  ID  
Sbjct: 359 FLRTLRRGGNILNQIIEGAQNTHHRISGDDAFKLKDTYGFPLEEIELIARDANL-VIDKE 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F     E + R+R          +  ++    + + AT F+GY+ L             
Sbjct: 418 RFELLENEAKERSRQVQKTTQQIASTNLFVDFVKTHAATTFLGYEQL------------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V  +V   + V + ++GQ   ++ DQTPFYAE GGQ+GDTG  + 
Sbjct: 465 ----------SARATVTGLVVDQQFVNQIIAGQDAMIILDQTPFYAEMGGQIGDTGTIVN 514

Query: 537 DGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 Q+T+     +G+  H   +  G L+   S+  ++D   R+++  NH+ATHLLH 
Sbjct: 515 HQGMSFQVTNTISPYQGVIAHVGTLTHGHLKVGDSVEASVDAPRRQKIENNHTATHLLHW 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + P  LRFD +H KP+T  EL  IE+ VN  I  NLPV T  + 
Sbjct: 575 ALHHVLGEHVKQAGSVVEPGRLRFDFSHHKPLTKQELNEIENLVNQRIRLNLPVKTYEIA 634

Query: 656 REDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            E+A  S       G KY  +VRVV          S  LCGGTH S+ G I L  I  E 
Sbjct: 635 YEEAQKSTDIKQFFGEKYGAKVRVV------DAEFSKELCGGTHTSALGNIGLFRIAKEG 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
           SI AG+RRIEA+TG+ A S     ++ + SLA  LK     +  R+E++ EE ++L    
Sbjct: 689 SIAAGVRRIEAVTGEDAESLSRHSEQFIDSLAELLKTQPQKLQERIEKLVEENKQLAQEM 748

Query: 774 --HAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
               K K++  V +LS     I  +  +   + +V + EL++ ++ LQ K+ SG+I L G
Sbjct: 749 KNLKKGKMEGMVTELSQQTEVIHHIPTIIAKV-DVPAAELRNFLELLQAKMGSGVIAL-G 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           +++E K  ++I V++DL+ +  NA  L +  A ++  G GGG+P+MAQ+GG    K  +A
Sbjct: 807 VTEEDKCHLIIRVSDDLVAKGINASQLIKTLAPMIE-GTGGGKPNMAQAGGKAPQKLTEA 865

Query: 889 IAGVASFLK 897
           +A     L+
Sbjct: 866 LAKFRELLQ 874


>gi|154483551|ref|ZP_02025999.1| hypothetical protein EUBVEN_01255 [Eubacterium ventriosum ATCC
           27560]
 gi|149735461|gb|EDM51347.1| hypothetical protein EUBVEN_01255 [Eubacterium ventriosum ATCC
           27560]
          Length = 886

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/911 (37%), Positives = 521/911 (57%), Gaps = 50/911 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    ++ +R  FL+FF+  GH ++ S SL+P ND +L+  N+GM P K  FTGQE P  
Sbjct: 8   MKQYGLNELRKMFLDFFESKGHLVMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPR 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             V T QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+  
Sbjct: 68  TRVATCQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKREAIHWSWEFLTEVV 123

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L+  RLY +VY ED+EAF +W K  G+ A++I +    DNFW     GPCGPCSEI++D
Sbjct: 124 GLEADRLYPSVYLEDDEAFDIWNKEMGIPAERIFKFGKEDNFWEHG-AGPCGPCSEIYYD 182

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +G     G PG     E +RYIEIWN VF QFE         L + +IDTGMGLER+ATV
Sbjct: 183 RGAKYGCGKPGCTVGCECDRYIEIWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLATV 242

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D  K L     ++   +Y+      V+ R++ DH+RS++F+I+DGI+P+N
Sbjct: 243 VQDVDSIFDVDTIKALRDKVCELANKEYKKEYKWDVSIRIVTDHIRSATFMISDGIMPSN 302

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + +LLG     +  L   +       YPEL + K +I + L  E
Sbjct: 303 EGRGYVLRRLIRRAARHGKLLGIDGRFLSTLSETVIESSKDGYPELEEKKSMIFKVLSEE 362

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           + +F KT+D GL +L  +   +       L+G+ AFKLYDT+G PLD+ ++IL  +G  G
Sbjct: 363 ENKFNKTIDTGLNILADMEEEMKKNNQTQLSGENAFKLYDTYGFPLDLTEEILEEKGF-G 421

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E QR +AR+          +   +   +K   T+F+GYD L         
Sbjct: 422 VDEDGFKEAMEVQRKKARSARKKTNYMGADATVYEQLDKALTTKFVGYDKLISD------ 475

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            ++V A+  + E+V+  V G K  +V ++TPFY   GGQ+GD G
Sbjct: 476 -----------------TVVTALTTEKEVVQALVDGDKGTIVTEETPFYGTMGGQVGDKG 518

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + +G   ++ +      G   H   V +G+++      + +D   R   S NHSATHL
Sbjct: 519 IIVTNGGEFKVEETIHLLGGKIGHVGTVVKGMIQVGDKATMKVDSAFRADTSKNHSATHL 578

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LG HV Q GS +  D LRFD TH + +T  E++ +E+ VN+ IA  L V+T+
Sbjct: 579 LQKALKTVLGEHVEQAGSYVDADRLRFDFTHFQAMTKEEIEKVENLVNEQIATGLDVITK 638

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ ++A  +GA AL G KY ++VRVVS+     G +S  LCGGTHVS+T  I    I+S
Sbjct: 639 EMSLDEAKETGAMALFGEKYGEKVRVVSM-----GDYSIELCGGTHVSNTNVISSFKIIS 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+T      H    +  L   A   K     +V +++ +++E ++L  
Sbjct: 694 ESGVAAGVRRIEALTSTGLMKHYKESENVLNQAAKLAKSEPVALVEKIQALYDEIKELSK 753

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + K K +L  E +        ++  V  ++  +  V   EL+++ D L++K+  G++++
Sbjct: 754 ENEKLKAKLANEAVGDVLSQVVEVKGVKLLATHVEGVGMNELRNLGDQLKEKMGGGVVVI 813

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           V   ++ KA+V+++  ED +    +A ++ +  AK++GGGG GGRP+MAQ+GG N   A 
Sbjct: 814 VST-QDGKANVIVMADEDAISKGAHAGNMIKEIAKLVGGGG-GGRPNMAQAGGKNPAGAK 871

Query: 887 QAIAGVASFLK 897
            A+    + L+
Sbjct: 872 DAVEAAKTILE 882


>gi|194017184|ref|ZP_03055796.1| alanyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194011052|gb|EDW20622.1| alanyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 878

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/915 (37%), Positives = 512/915 (55%), Gaps = 58/915 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SL+P +DPTL++ NSG+   K  F G+  P  
Sbjct: 1   MKTLTSAQVRQMFLDFFKEKGHAVEPSASLVPHDDPTLLWINSGVATLKKYFDGRVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  +
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSDE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   L +TV+ EDEEA+ LW+   G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPNLLSVTVHPEDEEAYVLWRDKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE     +         E ERY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGDDMNDPELYPGGENERYLEVWNLVFSEFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q    N+D DLF  +I+A E ++G  Y          +VI DH+R+ +F ++DG 
Sbjct: 234 MVSVIQNVPTNFDTDLFMPIIRAVETISGESYGETKEKDTAFKVIADHIRTVAFAVSDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YP++   +  I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTIHIHRPFMFDLVPVVAEIMKDFYPDVQAKEEFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+          ++G+  FKLYDT+G P+++ ++     
Sbjct: 354 IKNEEERFHETLNEGLAILSEVIKKERDKGSTQISGEDVFKLYDTYGFPVELTEEYAEDE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F   +E+QR RAR     +GS   +    +L +    + F+GY+ L     
Sbjct: 414 NMT-VDREGFQAEMEKQRERARNARQDVGSMQVQG--GALGDIKVESTFVGYENL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  ++Q GEIV EA  G  V+++ D+TPFYAE+GGQ+
Sbjct: 466 ------------------TADAHIVELLQNGEIVTEAHEGDTVQILLDETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G      + + I DV+K   G  VH  +V  G  +  + +   ++   R+ +  NH+
Sbjct: 508 ADKGTLKSAEVNIDIKDVKKAPNGQHVHEGVVVSGTAKKGLEVTAEVESALRKGIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSHV+Q GS +  + LRFD +H   +T  EL  IE  VN+ I + + 
Sbjct: 568 ATHLLHQALKDVLGSHVNQAGSLVNENRLRFDFSHFGQVTKEELSQIEKIVNEKIWEGIS 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VAIDLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVQNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AG RRIEA+TG+ A   L  Q   L+  AS LK +  +V  R+  +  + +
Sbjct: 683 KIASESGIGAGTRRIEAVTGKGAYEELNDQLTILEQAASELKSNTKDVPKRIASLQADLK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           ++Q  +     +L+  +         +I  V  ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 EVQRENESLLAKLSQAEAGSILEKVTEIGGVKVLTEKVNAKDMNHLRTMVDDLKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  + +  K ++   VT+D++++  +A  L + +A++ GGGG GGRP MAQ+GG   
Sbjct: 803 VIVLGAV-QNGKVNISAGVTKDVIEKGLHAGKLVKQAAEICGGGG-GGRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            K ++A+A V   +K
Sbjct: 861 EKLEEALAIVEESVK 875


>gi|46907732|ref|YP_014121.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b F2365]
 gi|59798548|sp|Q71ZG6|SYA_LISMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|46881001|gb|AAT04298.1| alanyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 879

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++I+ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKLEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGTALDYVSTWVKE 876


>gi|312110118|ref|YP_003988434.1| alanyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|311215219|gb|ADP73823.1| alanyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 877

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/915 (38%), Positives = 523/915 (57%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTSAQVRKMFLDFFKEKGHAIEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +  VQK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRICNVQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               +  RL +T++ ED+EAF++W K  GL  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFEPERLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEEFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++LQ    N++ DLF  +I+A+E+++G +Y  +    V  +VI DH+R+ +F I DG 
Sbjct: 234 MCSILQGTPTNFETDLFMPIIRATERISGEQYGADAEKDVAFKVIADHIRAVTFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ +A+ L    P M  L+P +   MG  YPE+ +    I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRFAKQLHIERPFMYELVPVVGEIMGDFYPEVKEKAAFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL  GL +L  V+    +   ++++G+  F+LYDT+G P+++ ++     
Sbjct: 354 IKTEEERFHETLHEGLAILASVIEKEKERGSDVISGEDVFRLYDTYGFPVELTEEYAQEE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F + +E QR RARA    + S   +     L +    ++F+GYD L     
Sbjct: 414 GMK-VDHEGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKVESRFVGYDEL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S V  IV+ G + +E   G++ +++ D TPFYAE+GGQ+
Sbjct: 466 ------------------HAQSKVAVIVKDGNLADEVSEGEEAQIILDVTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +  R  + DVQK   G  +HH IVE+G L+   + +  ID   R  +  NH+
Sbjct: 508 ADQGWLENETARAFVKDVQKAPNGQHLHHIIVEKGTLKKGETYMARIDEAKRASIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + PD LRFD +H   +   EL+ IE  VN+ I +++P
Sbjct: 568 ATHLLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V        +A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VDIFYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+ +A  LK S   +  R++ +  E R
Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMNEQIALLQEVAQKLKTSPKEITHRIDALMNEIR 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +LQ  +     +L   +         ++  +  ++  ++  D   L++++D L++K+ S 
Sbjct: 743 QLQRENESLAARLGNMEAASLVNKVKQVNGIPVLASKVNAADMNHLRTMVDELKQKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  E K S++  +T+DL+++ ++A  L +  A   GGGG GGR  MAQ+GG + 
Sbjct: 803 VIVLAAVHGE-KVSLIAGITDDLVEKGYHAGKLIKEVAVRCGGGG-GGRADMAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
            K  +A+  V +++K
Sbjct: 861 GKVGEALQYVETWIK 875


>gi|257784262|ref|YP_003179479.1| alanyl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257472769|gb|ACV50888.1| alanyl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 881

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/907 (39%), Positives = 509/907 (56%), Gaps = 46/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  G +  PSSSL+P  DP+L+  N+GM  FK  + G +       
Sbjct: 7   MTTAEIREDFLSFFESKGCKRYPSSSLVPS-DPSLLLANAGMNQFKEYYQGIKTMKEIGA 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKC+R     ND+DN+G  +RH +FFEMLGNFSFGGY K  A   A + ++  +   
Sbjct: 66  TSCQKCLRT----NDIDNIG-DSRHLSFFEMLGNFSFGGYTKRDACTWAMEFISSPEHLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY TV+ +D+EA ++WK + G++ D I R+   DNFW+   TGPCGPCSEI+FDQ
Sbjct: 121 LPLDRLYFTVFTDDDEAIEIWKSL-GITEDHITRLGEEDNFWAAGPTGPCGPCSEIYFDQ 179

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G    G  P   ++G+RY+E WNLVF QF++Q       LP  +IDTGMGLER+A ++Q 
Sbjct: 180 GPEFEGEAP--GDDGDRYLEFWNLVFTQFDRQEDGSLPELPHRNIDTGMGLERIAAIMQH 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +  NY+ D+ + LI   E+++G KY   +    + R++ DH R+ +F+I DGILP NEGR
Sbjct: 238 EGTNYEGDIMRTLISLGEKLSGKKYHSTDEIDRSLRILADHSRAVTFMIGDGILPGNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
            Y+LRR++RRA+ + RLLG     M      +   +G+ YPEL++   LI+  L +E+ER
Sbjct: 298 SYILRRLLRRAVYHGRLLGIQGTFMAEYAHEVAVLLGAEYPELVEKSALIDGILTAEEER 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           FG TLD G   L   L  L     L+G+VAF L+DT+G P+D+ ++I    G   +D+ +
Sbjct: 358 FGATLDAGESKLTAELEQLEDGAQLSGEVAFLLHDTYGFPIDLTREIAANAGH-VVDMDA 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+ A+ EQR RAR  +     G  + IW +L ++   T F GYD    S           
Sbjct: 417 FDAAMTEQRERARKSANRDAWGNAQSIWVALSDRLDETVFDGYDNNELSGV--------- 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         V A+VQ G+ VE A  G +VEVV D+TPFYAE GGQ+GDTG   G 
Sbjct: 468 -------------RVVALVQDGQEVESATVGSEVEVVLDRTPFYAEMGGQVGDTGRLSGP 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ + +TD + +  G+  H  +VE G L    S+  TID   R  +  NH+ATHLL  AL
Sbjct: 515 GLYVHVTDTKHRDGGLESHIGVVEEGTLSIGDSVTATIDAGRRELIRRNHTATHLLDAAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS + PD +RFD TH + +T  EL  IE  VN  I    P+VT+IM+ E
Sbjct: 575 KKVLGDHVNQAGSLVAPDRMRFDFTHFEALTKDELDRIEGMVNAEIFAAKPIVTKIMSIE 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA A+GA AL G KY D VRVVS   ED    S  LCGGTH  +T ++ L  I+SESS+ 
Sbjct: 635 DAKAAGAVALFGEKYGDVVRVVSAGTEDT-PFSRELCGGTHARNTADLGLFKIISESSVG 693

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +  RRIEA+T   A  ++  +  +L  +A+ LKV    V  RVE++ ++ R         
Sbjct: 694 SNSRRIEAVTSMGAIEYVDERLAQLDEVAAALKVRPSAVADRVEQLQQDLRAANHKLEAA 753

Query: 778 K-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ--SGIIMLVGI 830
                  Q+     S  ++   + +   +  +  KEL+S  D ++          ++   
Sbjct: 754 LTGAGSNQVAEALKSAVQLNGYSCVIAKLEGLSGKELRSAWDGIRDASDGQPVACVIASA 813

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K S+L   T+  +   F+A D+ +  A+ + GG GGG+P MAQ+GG N    D A+
Sbjct: 814 TADGKVSLLAGATDSAVAAGFSAGDIVKEIAEFV-GGRGGGKPAMAQAGGSNAAGIDAAL 872

Query: 890 AGVASFL 896
               + L
Sbjct: 873 DAARTKL 879


>gi|110597674|ref|ZP_01385959.1| alanyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110340794|gb|EAT59271.1| alanyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 901

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/923 (36%), Positives = 509/923 (55%), Gaps = 68/923 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y   
Sbjct: 16  MNSREIRQSFLDFFAQKGHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLDKGTRPYNRA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+L+T  + L 
Sbjct: 76  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAITWAWELMTGVWKLP 135

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY TVY +D+E+F++WK  + +S + I+R    DNFW M ETGPCGPCSEI  D  +
Sbjct: 136 ADRLYATVYQDDDESFQIWKDHTSISPEHILRFGDKDNFWEMGETGPCGPCSEIHIDLTD 195

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G     +    R IE+WNLVF+Q+ +Q+      LP   +DTGMG ER+A V+Q K+
Sbjct: 196 DASGKS-LVNVGDYRVIELWNLVFIQYNRQSDGRLEPLPNKHVDTGMGFERVAAVMQGKS 254

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+FK L     ++TG++Y    +  + +  RVI DH R+ +F ++DG +P+NEGR
Sbjct: 255 SNYDTDVFKPLFDRITEITGVRYGASMDEPHDIAMRVIADHARTLTFALSDGAMPSNEGR 314

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y++ LGY EP++  L+  L   MG  +PEL + +  + + +RSE+E 
Sbjct: 315 GYVLRRILRRALRYSKNLGYNEPILHQLVGTLADSMGDVFPELKKQRDTVSKIIRSEEES 374

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ + + V+S +   +  ++ G  AFKLYDT+G P D+ + +    GL  +D 
Sbjct: 375 FIVTLDRGIEIFNDVVSKVRSAKGTVIKGVDAFKLYDTYGFPFDLTRLMASDEGL-QVDG 433

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++EQ++RARA          +   +       AT F+GY+ L     +   +  
Sbjct: 434 EGFEHCMQEQKTRARADRKEKHQIEEDGSQWLWFSDQHATSFVGYEQLELPVRIIACKHA 493

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                            +K+ ++ D+TPFYAE+GGQ+GD G   
Sbjct: 494 K--------------------------------EKLLILLDKTPFYAESGGQVGDRGWIE 521

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS------------LVLTIDYQNRRQL 583
               RLQ+TD  K  + I          IL T ++               ++D+  R+  
Sbjct: 522 TASYRLQVTDTVKDGDAIVHVVTAAFDKILDTAVNPADLTIDEGQLSAEASVDHHIRQDT 581

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  ILG HV Q GS + P+ LRFD +H   ++ AE+  +E +VN+ I
Sbjct: 582 ERNHTATHLLHGALRRILGQHVQQKGSYVNPERLRFDFSHFSKMSDAEIARVEASVNEEI 641

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +   V     +  +DAIA GA A  G KY D VRVV V        S  LCGGTHV + 
Sbjct: 642 RRAEEVQKHADIPYDDAIAKGALAFFGDKYADLVRVVEVPG-----ISVELCGGTHVDNI 696

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVE 761
           G I L  IVSESS+ +G+RRIEA+TG+ A   L  +  +L+ +   LK      V  R+ 
Sbjct: 697 GRIGLFKIVSESSVASGVRRIEALTGKSAEKLLWQEYAELQQIRQLLKAKGDEPVASRIV 756

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDAL 816
           E+ +  ++L+    + ++   ++ LS       +++    ++ ++   D   L+S   AL
Sbjct: 757 ELMDARKELEKELHEIRIGSLLQSLSVDLQSAPEVSGCKLLAKVVEGADGDALRSAGLAL 816

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874
           ++ +     +L  + ++ K S+ +  ++  +     +A  L R  A+ + GG GGG+P  
Sbjct: 817 REAVPCAAGLLCSV-QDGKVSLAVFASDKAVKELGIDAGKLIREVAQHVQGG-GGGKPEF 874

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           A +GG N +  ++A+    + +K
Sbjct: 875 ATAGGKNPDGVNKALEAFTTAVK 897


>gi|228960660|ref|ZP_04122305.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799024|gb|EEM45996.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 880

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229918435|ref|YP_002887081.1| alanyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|229469864|gb|ACQ71636.1| alanyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 880

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/911 (39%), Positives = 527/911 (57%), Gaps = 57/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF+  GH + PS+SL+P  DPTL++ NSG+   K  F G+  P    + 
Sbjct: 8   TGAQIRQMYLDFFKSKGHSVEPSASLVPVEDPTLLWINSGVATLKKYFDGRVIPANPRIV 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E AI   W+LLT  + + L
Sbjct: 68  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSVGEYFREEAITWGWELLTSDEWYGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +T++ +DEE+ ++W  + G+ AD+II +   DNFW + E GP GP +EIFFD+G
Sbjct: 124 DPDRLSVTIHPDDEESKQIWMNL-GMPADRIIPL--EDNFWEIGE-GPSGPNTEIFFDRG 179

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWN+VF Q+          LP+ +IDTGMGLERMA+V
Sbjct: 180 PAFGDDPTDPELYPGGENERYLEIWNIVFSQYNHDGHGNYTELPRKNIDTGMGLERMASV 239

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ+   N+D DLF  +I+ +E+++G  Y  +    V  +VI DH+R+ SF I DG LP+N
Sbjct: 240 LQDVPTNFDTDLFMPIIRETEKISGDVYRQDSSKDVAFKVIADHIRTVSFAIGDGALPSN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA++LG   P M  L+  +   M   YP++ + K  I++ +++E
Sbjct: 300 EGRGYVLRRLLRRAVRYAKMLGIERPFMYELVDVVGDIMVDFYPQVNEKKDFIKKVIKNE 359

Query: 355 DERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ V          I++G  AF+LYDT+G PL++  +         
Sbjct: 360 EERFHETLNDGLAILNEVAKAQKAAGSNIISGQDAFRLYDTYGFPLELTIEY-AEDHQMT 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+ EQR RAR     + S   +     L +    + F+GY+ L         
Sbjct: 419 VDEDGFKEAMNEQRERARQARADVESMQIQSGV--LADITMPSTFLGYNNLE-------- 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           ++ + +++  GE+ +   +G++ +V+ DQTPFYAE+GGQ+GD G
Sbjct: 469 ---------------TNAKIISLIHNGELADVVAAGEEAQVILDQTPFYAESGGQIGDKG 513

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G+   L++ DV K   G  +H   VE G+ + E+++  ++D  +R+ +  NH+ATHL
Sbjct: 514 QIVGEDFLLRVKDVSKAPNGQNLHTVTVESGVAKAEVAVTASVDQASRQAIVKNHTATHL 573

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +TPD LRFD +H   +TS EL+SIE  VN+ I  ++ V   
Sbjct: 574 LHRALKDTLGEHVNQAGSLVTPDRLRFDFSHFGQVTSEELQSIERQVNEKIWASIGVDIE 633

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            MN  DA A GA AL G KY D VRVVS      G +S  LCGG HVS+T EI L  I+S
Sbjct: 634 EMNIADAKAKGAMALFGEKYGDVVRVVS-----AGDYSVELCGGIHVSNTAEIGLFKILS 688

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG  A   +  Q E L++ A  LK     V  RV+ +  E ++++ 
Sbjct: 689 ESGIGAGTRRIEAVTGAGAYEVMNQQIETLEAAAKLLKTKPLEVPARVQALQAEIKEVER 748

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L   + S        I  V  ++  +   D   L+S++D L+ K+ S +I+L
Sbjct: 749 ASESLKAKLANIEASSLTDAIETIGGVQLIAKRVDGQDMDALRSMVDDLKGKLGSAVIIL 808

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              + E K +++  VT+DL DR F+A  L +  A   GGGG GGRP MAQ+GG +  K D
Sbjct: 809 GSANGE-KVNLVAGVTKDLNDRGFHAGKLIKEVATRCGGGG-GGRPDMAQAGGRDATKLD 866

Query: 887 QAIAGVASFLK 897
           +A+   + +++
Sbjct: 867 EALKFASHYVE 877


>gi|229146959|ref|ZP_04275323.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228636558|gb|EEK93024.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
          Length = 880

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL    ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLITQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|228902916|ref|ZP_04067057.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228967463|ref|ZP_04128492.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792240|gb|EEM39813.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228856700|gb|EEN01219.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 880

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H   VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     +  +A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 NVEISQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|320161086|ref|YP_004174310.1| alanyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319994939|dbj|BAJ63710.1| alanyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 911

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/926 (38%), Positives = 527/926 (56%), Gaps = 47/926 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M       IR TF++FF + GH  +PSSSL+P  D TL+FTN+GMV FK++F G +   Y
Sbjct: 1   MKKWTGVEIRQTFIDFFVQRGHTFVPSSSLVPGGDQTLLFTNAGMVQFKDVFLGTDHRPY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+R  GKHNDLD+VGR + HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ +
Sbjct: 61  SRAVNSQKCMRVAGKHNDLDDVGRDDTHHTFFEMLGNWSFGDYYKKEAIAWAWELLTQVY 120

Query: 119 DLDQRRLYITVYDE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
            LD  RLY T + +       DEEA ++W+     + + ++     DNFW MA+TGPCGP
Sbjct: 121 QLDPARLYATCFKDEKGDIPTDEEAAEVWRSQPNFNPEHVLFFGRKDNFWEMADTGPCGP 180

Query: 172 CSEIFFDQGEC------IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           CSEI  D+G        +PG +   + + +R++EIWNLVF+Q+ + +  E   LP+  +D
Sbjct: 181 CSEIHIDRGPEACDKKGVPGHVCRVNGDCKRFLEIWNLVFIQYNRLSPTELEPLPQRHVD 240

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSS 283
           TGMG ER+ ++LQ  ++NY  DL   L+Q ++++TG        NI  +RVI DH R+++
Sbjct: 241 TGMGFERLVSLLQGVSSNYRTDLLWPLLQKTQELTGHTDAEREANITPYRVIADHARAAT 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           FLIADG++P N GR YV R I+RRA  +   +G  EP +  +   +    G  YPEL++ 
Sbjct: 301 FLIADGVVPGNTGRNYVCRMIIRRAARFGGKIGLKEPFLAKVAEVVIQNYGDFYPELVRN 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIM 401
           +  I + +  E+ERF +TL+ G+  L   L  L    ++IL+G  AF LY THGLPL++ 
Sbjct: 361 RTAILDGITREEERFQRTLESGMKELQESLDGLKGKGEKILDGKKAFDLYATHGLPLELT 420

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           +DI   +GL  +D   F  A+EE R  + A       G  +   +               
Sbjct: 421 RDIAQEQGL-DVDQQGFRDAMEEHRLASGAGKAFGPLGGEDVDLYRPA------------ 467

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L   +   +  K   +  P +    V   + A+ ++G+ V    +G +VEV+  +T FY
Sbjct: 468 -LESLQAEGKLGKAGVEYNPYEWLE-VEGELLALFREGQRVSSVSAGDQVEVLLPRTGFY 525

Query: 522 AEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
            EAGGQ+ D G  +        +++T+++K A G+ VH   V RG       ++  +D Q
Sbjct: 526 VEAGGQVSDAGTIVSVNEPRWEIRVTEMRKPAAGVIVHVGEVVRGTPTVGDWVIARVDTQ 585

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            RR +  NH+ATHLLH  L  +LG H  Q GS + PD LRFD TH +P+T  +L+ IE  
Sbjct: 586 RRRDIMRNHTATHLLHAELQEVLGEHARQAGSLVAPDRLRFDFTHPEPLTPEQLERIEAG 645

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I +N+P+ TR+   ++AIA GA AL G KY + VR V +   D    S  LCGGTH
Sbjct: 646 VNRAILENIPLQTRVKPLQEAIAEGAMALFGEKYGEVVRTVMIGETD--PLSYELCGGTH 703

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  TG+I L  IVSE S  AG+RRIEA+TG+ A   +  +   ++  A  L  S   V  
Sbjct: 704 VHETGDIGLFLIVSEGSAAAGVRRIEAVTGRGAYELVQKRFRNMRKTAEMLSASMDEVPE 763

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNV----EDLSCHK-IADVNFMSHIISEVDSKELKSVM 813
           RVE + +E   L+   A  + Q+      +DL     I DV  ++ +I  VD+  L+S+ 
Sbjct: 764 RVENLLDEMSILRKAVASLRQQVASLAFDQDLEKVTFIEDVAVLTSLIQGVDADTLRSLA 823

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
           D  +++  +G+++L  +  + K  ++  VT+DL+ R F+A DL +  A V+GGGG GGRP
Sbjct: 824 DRFRQRYSTGVVVLASVV-DGKPVIIGAVTDDLVKRNFHAGDLVKRVAAVVGGGG-GGRP 881

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            +AQ+GG + ++  +A+     ++K+
Sbjct: 882 TLAQAGGRDVSRLSEALDQTYGYVKE 907


>gi|30264458|ref|NP_846835.1| alanyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47529915|ref|YP_021264.1| alanyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187280|ref|YP_030532.1| alanyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|65321756|ref|ZP_00394715.1| COG0013: Alanyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|165872747|ref|ZP_02217375.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167636505|ref|ZP_02394802.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167638586|ref|ZP_02396862.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170689638|ref|ZP_02880820.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170709398|ref|ZP_02899809.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177653242|ref|ZP_02935494.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190566972|ref|ZP_03019888.1| alanyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227817167|ref|YP_002817176.1| alanyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|229602565|ref|YP_002868676.1| alanine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254684144|ref|ZP_05148004.1| alanyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254736491|ref|ZP_05194197.1| alanyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741529|ref|ZP_05199216.1| alanyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254751372|ref|ZP_05203409.1| alanyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254757704|ref|ZP_05209731.1| alanyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|33301676|sp|Q81LK0|SYA_BACAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|30259116|gb|AAP28321.1| alanine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47505063|gb|AAT33739.1| alanyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181207|gb|AAT56583.1| alanyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|164711523|gb|EDR17072.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167513434|gb|EDR88804.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167528098|gb|EDR90895.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170125697|gb|EDS94613.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170666408|gb|EDT17189.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172081524|gb|EDT66596.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190561963|gb|EDV15932.1| alanyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227003572|gb|ACP13315.1| alanine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|229266973|gb|ACQ48610.1| alanine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 880

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILSEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D GC + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGCLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AGIRRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGIRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229192600|ref|ZP_04319561.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228590907|gb|EEK48765.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 10876]
          Length = 880

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVAAESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|30022464|ref|NP_834095.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|206969900|ref|ZP_03230854.1| alanyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|229081653|ref|ZP_04214148.1| Alanyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229111861|ref|ZP_04241407.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|229129669|ref|ZP_04258637.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229180664|ref|ZP_04308004.1| Alanyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|296504879|ref|YP_003666579.1| alanyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|33301672|sp|Q817Z0|SYA_BACCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29898022|gb|AAP11296.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|206735588|gb|EDZ52756.1| alanyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228602809|gb|EEK60290.1| Alanyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228653786|gb|EEL09656.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|228671617|gb|EEL26915.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228701657|gb|EEL54148.1| Alanyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|296325931|gb|ADH08859.1| alanyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 880

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|295399321|ref|ZP_06809303.1| alanyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978787|gb|EFG54383.1| alanyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 877

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/915 (38%), Positives = 522/915 (57%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTSAQVRKMFLDFFKEKGHAIEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +  VQK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRICNVQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               +  RL +T++ ED+EAF++W K  GL  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFEPERLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEEFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++LQ    N++ DLF  +I+A+E+++G +Y  +    V  +VI DH+R+ +F I DG 
Sbjct: 234 MCSILQGTPTNFETDLFMPIIRATERISGEQYGADAEKDVAFKVIADHIRAVTFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ +A+ L    P M  L+P +   MG  YPE+ +    I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRFAKQLHIERPFMYELVPVVGEIMGDFYPEVKEKAAFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL  GL +L  V+    +   ++++G+  F+LYDT+G P+++ ++     
Sbjct: 354 IKTEEERFHETLHEGLAILASVIEKEKERGSDVISGEDVFRLYDTYGFPVELTEEYAQEE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F + +E QR RARA    + S   +     L +    + F+GYD L     
Sbjct: 414 GMK-VDHEGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKVESHFVGYDEL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S V  IV+ G + +E   G++ +++ D TPFYAE+GGQ+
Sbjct: 466 ------------------HAQSKVAVIVKDGNLADEVSEGEEAQIILDVTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +  R  + DVQK   G  +HH IVE+G L+   + +  ID   R  +  NH+
Sbjct: 508 ADQGWLENETARAFVKDVQKAPNGQHLHHIIVEKGTLKKGETYMARIDEAKRASIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + PD LRFD +H   +   EL+ IE  VN+ I +++P
Sbjct: 568 ATHLLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V        +A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VDIFYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+ +A  LK S   +  R++ +  E R
Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMNEQIALLQEVAQKLKTSPKEITHRIDALMNEIR 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +LQ  +     +L   +         ++  +  ++  ++  D   L++++D L++K+ S 
Sbjct: 743 QLQRENESLAARLGNMEAASLVNKVKQVNGIPVLASKVNAADMNHLRTMVDELKQKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  E K S++  +T+DL+++ ++A  L +  A   GGGG GGR  MAQ+GG + 
Sbjct: 803 VIVLAAVHGE-KVSLIAGITDDLVEKGYHAGKLIKEVAVRCGGGG-GGRADMAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
            K  +A+  V +++K
Sbjct: 861 GKVGEALQYVETWIK 875


>gi|237741671|ref|ZP_04572152.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|229429319|gb|EEO39531.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
          Length = 867

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/909 (36%), Positives = 507/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y        + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLGNIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGITVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYEKTEDEGKLLNLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                   K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 E-------------------------------TKDGKYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DV +K + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFVGKVLDV-QKQKDIFIHTVEFEKGIAEENKTYKLVVDVVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IE+ VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEKLSKIENIVNEKIREGIEVSISY 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            N E+A   GA  L G KY D+VRVV V        S+ LC GTH+ + G+I L  I+SE
Sbjct: 623 HNIEEAKKLGAMMLFGDKYGDKVRVVDVPG-----FSTELCEGTHIDNIGKIGLFKIISE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      +   L  +   LK +  N+V +VE+  E  ++ +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I  V  +     +  +++L++++DA++ + +  II+L 
Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L+D+  A DL +  A+ + GG GGGR   AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLIDKIKAGDLVKKLAE-ITGGKGGGRADFAQAGGKDEEKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVRGIIE 863


>gi|307152653|ref|YP_003888037.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306982881|gb|ADN14762.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 881

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/906 (37%), Positives = 510/906 (56%), Gaps = 50/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL+F+ K  H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+K  Y   T
Sbjct: 9   SGSEIRSYFLDFYAKKEHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQKSDYPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVFGLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+ ++V+ ED+EAF+LW+   G+   +I R+   DNFW    TGPCGPCSE+++D    
Sbjct: 124 NRIIVSVFQEDDEAFELWRDKIGIPPHRIKRMGEEDNFWKSGPTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GDKNIDLEDDSRFIEFYNLVFMQYNRDAQGNLTPLQNKNIDTGMGLERMAQILQKVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ++ ++ G+ Y+  +     + +VI DH+R+   +IADGI  +N GRGY
Sbjct: 243 NYETDLIFPIIQSAAEIAGIDYKKADEKTKISLKVIGDHVRAVVHMIADGITASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G     +  +     +     YP +   +  I+  L+ E+  F 
Sbjct: 303 ILRRLIRRVVRHGRLIGIDGAFINKVAEVAISLSEDIYPIVRVRETPIKAELQKEEAAFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            TL+RG  LL  +++ + + +   ++G  AF LYDT+G PL++ Q+I   +GL  +D   
Sbjct: 363 VTLERGEKLLSEIIADVKRRKKKQISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDEDQ 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN+ +++Q+ R++A    +   T +     L E    TQF+GY                 
Sbjct: 422 FNEEMKKQQERSKAAHETIDL-TVQGSLDKLAEHIHPTQFLGYQDAASV----------- 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + ++ ++  G+ V+ A +G +V++V +QTPFYAE+GGQ+GD G   G+
Sbjct: 470 ------------AQIEVVLVDGKTVDSAEAGTEVQIVLNQTPFYAESGGQIGDKGYITGE 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ DV +K    FVH   VERG +    ++  TID   RR++  +H+ATHLL  AL
Sbjct: 518 NLVIRVEDV-QKESAFFVHFGRVERGTVSVGDTITATIDRACRRRVQAHHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   VSQ GS +T D LRFD    + +T  EL+ IED +N  IA+     T IM  E
Sbjct: 577 KKIVDESVSQAGSLVTFDRLRFDFNCPRAVTPQELQQIEDLINSWIAEAHDAHTYIMALE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY   VRV+ V        S  LCGGTHV +T EI L  I+SES I 
Sbjct: 637 EAKAKGAVAMFGEKYGAEVRVLDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G     +L  +D  +K L    KV    +  R+  +  E +         
Sbjct: 692 SGVRRIEAVAGPAVLEYLNERDTVVKDLCDRFKVKPNEISDRITALQSELKATLKQLEAA 751

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L +        +   + +   +   +  VD   L +  + LQ+K+  G ++L  IS 
Sbjct: 752 QQELAIAKSDQLLANADAVGEFKVLVAEMEGVDPNGLMTAAERLQQKLGEGAVILGAISA 811

Query: 833 EKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E K S++   +  ++   +  A       AK+ GGGG GGRP++AQ+GG + +K   A++
Sbjct: 812 EGKVSLVAAFSPKVVKEKKLQAGKFIGEVAKICGGGG-GGRPNLAQAGGRDPSKLKDALS 870

Query: 891 GVASFL 896
                L
Sbjct: 871 AAKKQL 876


>gi|228993127|ref|ZP_04153049.1| Alanyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228999175|ref|ZP_04158757.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229006723|ref|ZP_04164357.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228754584|gb|EEM03995.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228760792|gb|EEM09756.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|228766586|gb|EEM15227.1| Alanyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 880

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFEEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY G +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRGGDVEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYAKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++   ++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTAISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHTGFEAEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  E ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQSLHKIVVEEGTLTKESAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATH+LH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHILHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVSLLKEAAGKMKTNPKDILTRVDGLFTEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVVTVDGVNVLATKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  E K ++L  VT+DL++  ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLAAV-NEDKVNILAGVTKDLINQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + D A+A V  ++K
Sbjct: 861 PAQVDDALAFVEEYVK 876


>gi|218231748|ref|YP_002369198.1| alanyl-tRNA synthetase [Bacillus cereus B4264]
 gi|218159705|gb|ACK59697.1| alanine--tRNA ligase [Bacillus cereus B4264]
          Length = 880

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAVKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|254724685|ref|ZP_05186468.1| alanyl-tRNA synthetase [Bacillus anthracis str. A1055]
          Length = 880

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILSEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D GC + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGCLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|282850479|ref|ZP_06259858.1| alanine--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579972|gb|EFB85376.1| alanine--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 871

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/909 (37%), Positives = 497/909 (54%), Gaps = 55/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +
Sbjct: 1   MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD
Sbjct: 61  TTSQKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG 
Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ 
Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQG 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N++ DL   +I+A+ +  G+KY    N  V+ +VI DH R+ + LI+DG+LP+NEGR
Sbjct: 234 CKTNFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ER
Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEER 353

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID 
Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKAAVIPGTEVFKLYDTYGFPWELTEEIASERGFT-IDH 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A++EQR RAR   +   +         LK++                        
Sbjct: 413 EGFEAAMKEQRERAREARVKEDAKVATPDITFLKDE------------------------ 448

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                 ++     +S V  + +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +
Sbjct: 449 ----ELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIV 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G   +++I + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH 
Sbjct: 505 GPMGKVEIHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+
Sbjct: 565 ALKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ 
Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRIEAITG+ A          ++ +AS LK     +  R+ ++  E +       
Sbjct: 680 IGSGVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEERLHQVLTEAKDTAKELE 739

Query: 776 KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829
           + + +L+    +        + DV F+   +      EL+ + D    K+  SG++++  
Sbjct: 740 QIRKELSAAGAADIIAGKVVVGDVEFVGAAVKASSIDELRDLADMGLDKLNGSGVVLVGA 799

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I  + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K  +A
Sbjct: 800 IMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMEA 858

Query: 889 IAGVASFLK 897
           +      LK
Sbjct: 859 LKAGGEALK 867


>gi|157693144|ref|YP_001487606.1| alanyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|205829985|sp|A8FFM9|SYA_BACP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157681902|gb|ABV63046.1| alanine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 878

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/915 (37%), Positives = 510/915 (55%), Gaps = 58/915 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SL+P +DPTL++ NSG+   K  F G+  P  
Sbjct: 1   MKTLTSAQVRQMFLDFFKEKGHAVEPSASLVPHDDPTLLWINSGVATLKKYFDGRVVPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  +
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSDE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   L +TV+ EDEEA+ LW+   G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPNLLSVTVHPEDEEAYVLWRDKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE     +         E ERY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGHDMNDPELYPGGENERYLEVWNLVFSEFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q    N+D DLF  +I+A E ++G  Y          +VI DH+R+ +F ++DG 
Sbjct: 234 MVSVIQNVPTNFDTDLFMPIIRAVETISGESYGETKEKDTAFKVIADHIRTVAFAVSDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YP++   +  I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTIHIHRPFMFDLVPVVAEIMKDFYPDVQAKEEFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+          ++G+  FKLYDT+G P+++ ++     
Sbjct: 354 IKNEEERFHETLNEGLAILSEVIKKERDKGSSQISGEDVFKLYDTYGFPVELTEEY-AED 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
               +D   F   +E+QR RAR     +GS   +    +L +    + F+GY+ L     
Sbjct: 413 EHMTVDREGFQAEMEKQRERARNARQDVGSMQVQG--GALGDIKVESTFVGYENLTAVAH 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           M E                       ++Q GEIV EA  G  V+++ D+TPFYAE+GGQ+
Sbjct: 471 MIE-----------------------LLQNGEIVSEAHEGDTVQILLDETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G      + + I DV+K   G  VH  +V  G  +  + +   ++   R+ +  NH+
Sbjct: 508 ADKGTLKSAEVIIDIKDVKKAPNGQHVHEGVVVSGTAKKGLVVTAEVESALRKGIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSHV+Q GS +  + LRFD +H   +T  EL  IE  VN+ I + + 
Sbjct: 568 ATHLLHQALKDVLGSHVNQAGSLVNENRLRFDFSHFGQVTKEELSQIEKIVNEKIWEGIS 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VAIDLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVQNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AG RRIEA+TG+ A   L  Q   L+  AS LK +  +V  R+  +  + +
Sbjct: 683 KIASESGIGAGTRRIEAVTGKGAYEELNDQLGILEQAASELKSNTKDVPKRIASLQADLK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           ++Q  +     +L+  +         +I  V  ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 EVQRENESLLAKLSQAEAGSILEKVTEIGGVKVLTEKVNAKDMNHLRTMVDDLKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  + +  K ++   VT+D++++  +A  L + +A++ GGGG GGRP MAQ+GG   
Sbjct: 803 VIVLGAV-QNGKVNISAGVTKDVIEKGLHAGKLVKQAAEICGGGG-GGRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            K ++A+  V   +K
Sbjct: 861 EKLEEALTSVEESVK 875


>gi|228954673|ref|ZP_04116696.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228805000|gb|EEM51596.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 880

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIDATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVENTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229086952|ref|ZP_04219109.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228696328|gb|EEL49156.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 880

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFEEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ ED+EAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDDEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDVEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYAKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHAGFEAEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++  ++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDGLQAGEEGHLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  E ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVVTVDGVNVLATKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A++ V  ++K
Sbjct: 861 PAQVEEALSFVEEYVK 876


>gi|229032038|ref|ZP_04188021.1| Alanyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|228729283|gb|EEL80277.1| Alanyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 880

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDQEGFESEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ G+  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGKYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229543743|ref|ZP_04432803.1| alanyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229328163|gb|EEN93838.1| alanyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 881

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/920 (39%), Positives = 526/920 (57%), Gaps = 64/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR+ FL+FF++ GH++ PS+SLIP NDP+L++ NSG+   K  F G   P  
Sbjct: 1   MKKRSSAEIRSMFLDFFKEKGHKVEPSASLIPVNDPSLLWINSGVATLKKYFDGTVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E AI  AW+LLT  K
Sbjct: 61  PRIVNAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAIAWAWELLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F + + +LY+TVY +D ++   WKK  G+S D II +    NFW + E GP GP +EIF
Sbjct: 117 WFGMPKEKLYVTVYPDDLDSIACWKK-IGVSPDHIIPL--EGNFWEIGE-GPSGPDTEIF 172

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF         E   LPK +IDTGM
Sbjct: 173 FDRGEKYDPERLGIRLLQEDMENDRYIEIWNIVLSQFNAIPGVPRSEYPELPKKNIDTGM 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFL 285
           GLERMA VLQ    NYD DLF  +IQ  E+++G KY   N       +VI DH+R+ +F 
Sbjct: 233 GLERMACVLQGVDTNYDSDLFMPIIQEVEKISGKKYRAGNKEADTAFKVIADHIRTVAFA 292

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +ADG LP+NEGRGYVLRR++RRA+ YA  L      M  L+P +   M S YPE+ +   
Sbjct: 293 VADGALPSNEGRGYVLRRLLRRAVRYAIQLDIHGAFMYKLVPTVGRIMNSYYPEVEKNAD 352

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
            +++ +RSE+ERF +TL+ GL +L+  +  +     E L G+  F LYDT+G P+++ ++
Sbjct: 353 FVQKVVRSEEERFQETLNEGLSILEERIRAAKKNGLEQLPGEDIFMLYDTYGFPVELTEE 412

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               +GL   D   F + +E QR RAR       S + +     L      ++FIGYD L
Sbjct: 413 YAHDQGLRA-DHEGFEKEMERQRERARNARQQAESMSVQGGV--LGNITVKSEFIGYDHL 469

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G                       ++ V  +++ G+I E A SG+++  + DQTPFYAE
Sbjct: 470 EG-----------------------TAHVAVLLKDGDITESAASGEEIRFILDQTPFYAE 506

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ D G    +G+++++T+VQK   G  +H  +V  G ++T   +   +D   RR  
Sbjct: 507 SGGQIADHGTLTAEGLKVEVTNVQKAPNGQNLHQGVVVSGTIKTGQEVFAQVDGAKRRDT 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG HV+Q GS + P  LRFD +H   +T  EL+ IE  VN+ I
Sbjct: 567 EKNHSATHLLHQALKDVLGVHVNQAGSLVEPGRLRFDFSHFGQVTEEELEKIETIVNEKI 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +LPV T +   ++A A GA AL G KY + VRVV +     G +S  LCGG HVS+T 
Sbjct: 627 WASLPVTTDLKKLDEAKAMGAMALFGEKYGEIVRVVQM-----GDYSLELCGGCHVSNTA 681

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  IVSES I AG RRIEA+TG+ A   +  Q   LK  ++ LK     +  R++ +
Sbjct: 682 QIGLFKIVSESGIGAGTRRIEAVTGKYAYGLMQEQLHLLKEASAKLKAKPTELPDRIDAL 741

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E ++ Q  +A    +L   +          +  +N ++  +   D  +L+++ D L++
Sbjct: 742 QQELKEAQRENASLAAKLANIEAGSLVDRVKVVDGINVLAAKVEAGDMNQLRNMADDLKQ 801

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K+ SGII+L   + E KAS +  VT+DL+++ ++A  L +  A   GGGG GGRP MAQ+
Sbjct: 802 KLGSGIIVLAAAT-EGKASFIAGVTKDLVEKGYHAGKLVKEVASRCGGGG-GGRPDMAQA 859

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG    + D A+  V  ++K
Sbjct: 860 GGKQPEQIDAALQIVEEWVK 879


>gi|42783517|ref|NP_980764.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|48428502|sp|P61697|SYA_BACC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|42739446|gb|AAS43372.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 880

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYADSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K+QS
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLQS 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|312135147|ref|YP_004002485.1| alanyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311775198|gb|ADQ04685.1| alanyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 879

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/909 (37%), Positives = 520/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 1   MATDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 61  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL   +I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 117 RERLWVTIYEEDDEAFEIWHKEVGLEPQRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 175

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 176 DKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VT  +Y  +    V+ RVI DH+R   F+I DGILP+NEGR
Sbjct: 236 VDSLFDIDIVKAIRDKVCEVTSYEYRKDTEKDVSVRVITDHIRGIVFMIGDGILPSNEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     ++YPEL+Q    I++ L +E+ R
Sbjct: 296 GYVLRRLIRRASRHGRMLGKKEAFLHLIVDTVIESYKNSYPELVQKVEYIKKVLYNEESR 355

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  ILNG++AFK+YDT+G PLD+ ++I   +G+  +D 
Sbjct: 356 FNQTIDVGLEILENEIEKLKKNKETILNGEIAFKMYDTYGFPLDLTKEIAAEKGII-VDQ 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   + E    T F+GY+ L+           
Sbjct: 415 ERFDELMQQQKERARAAQKELENVGWKDINIVIDEDI-ETVFVGYETLKQ---------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S +  I  + E V  A       V+ D+TPFYAE+GGQ+ D G   
Sbjct: 464 -------------ESKILKIFMESEEVAYAKEEDVCFVILDKTPFYAESGGQIADKGILE 510

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K  +G  +H   V +G +    S+V  +D   R     NH+ATHLLH 
Sbjct: 511 GEGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVDEDLRFATMKNHTATHLLHS 570

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS ++PD LRFD  H +P++  ++  IE  VN++I Q +PV   + +
Sbjct: 571 ALRKILGQHAQQSGSQVSPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 630

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +        S  LCGGTHV +TG+I +  I+SESS
Sbjct: 631 LDSALRMGAIALFDEKYSNLVRVIKI-----DDFSMELCGGTHVDNTGQIGMFKIISESS 685

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK L S +K S    +V ++E++  + + L+   
Sbjct: 686 VAAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIVSKIEQLENKIKNLENEV 745

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   +LS          +   + +     D   +K + D ++++  S  I+L  
Sbjct: 746 EKYKLLVVENELSLLFSKAIDYGEFKLIVNRKETDDMDYVKLLTDKIKER-DSKAIVLNI 804

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           + +  K +VL+  +++ + +  +   + R    V+ GG GGGRP  AQ GG +  K D A
Sbjct: 805 LEQGNKVTVLMSCSKEAVKKGVDCGKVVREVCSVV-GGKGGGRPDFAQGGGNDILKIDIA 863

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 864 VQTAENILK 872


>gi|229587224|ref|YP_002845725.1| alanyl-tRNA synthetase [Rickettsia africae ESF-5]
 gi|228022274|gb|ACP53982.1| Alanyl-tRNA synthetase [Rickettsia africae ESF-5]
          Length = 878

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/901 (45%), Positives = 561/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R    +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRD-IAVDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I +H  I++RG +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIIHKCILKRGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDAI
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAI 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+   + +  +D  LKS+ S  K ++  ++ +V  I E  ++++    K    
Sbjct: 696 RRIEAVCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|229071897|ref|ZP_04205108.1| Alanyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228711193|gb|EEL63157.1| Alanyl-tRNA synthetase [Bacillus cereus F65185]
          Length = 880

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIDATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T  + S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVAIESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVENTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|324328292|gb|ADY23552.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 880

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTAVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYADSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K+QS
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLQS 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|228910224|ref|ZP_04074042.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228849388|gb|EEM94224.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 880

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H   VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     +  +A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 NVEISQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229175062|ref|ZP_04302580.1| Alanyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228608430|gb|EEK65734.1| Alanyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 880

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+  +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVLVVGEVMKDFYPEVVEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDQEGFESEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|254303692|ref|ZP_04971050.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323884|gb|EDK89134.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 867

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L++TV+  D+EA ++W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVTVFTTDDEAERIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K NN++ DL   +++ + ++TG +Y        + +VI DH R+ +FL+ DG++P+NE
Sbjct: 236 QGKANNFETDLLFPILEEAAKITGSQYGKNPEIDFSLKVITDHARAVTFLVNDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGYT+  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYTDLFMYKMVDKVVEKFEVAYPDLRKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVTVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+ +     +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGITKFTGYEKIEDEGKLLSIR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DV +K + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDSFEAKVLDV-QKQKDIFIHTVEFEKGIAEENKTYKLEVDIVKRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS +  + LRFD +H + +T+ +L  IED VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDSEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVAVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  IVSE
Sbjct: 623 HTIEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      +   LK +   LK +  N+V +VE+  E  R  +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEREEANILKDIEKKLKATNINLVEKVEKTLETLRDTEKE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I     +     +  +++L++++D ++   + GII+L 
Sbjct: 738 LETLKQKLALFETKSAISDMEEIGGAKVLIATFKDKSTEDLRTMIDTIKDNNEKGIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K S  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K   A
Sbjct: 798 STQ--DKLSFAVGVTKTLTDKVKAGDLVKKLAE-ITGGKGGGRPDFAQAGGKDEGKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVREIIE 863


>gi|229163337|ref|ZP_04291289.1| Alanyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228620118|gb|EEK76992.1| Alanyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 880

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ ED+EAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDDEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRDGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDQAGFESEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGMHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNSKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229152592|ref|ZP_04280781.1| Alanyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228630853|gb|EEK87493.1| Alanyl-tRNA synthetase [Bacillus cereus m1550]
          Length = 880

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  ++E G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVIEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAVKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|209523613|ref|ZP_03272167.1| alanyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209496018|gb|EDZ96319.1| alanyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 876

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/904 (37%), Positives = 494/904 (54%), Gaps = 51/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL F+ +  H+++PS+SL+P  DPT++ T +GM+ FK IF GQ        T
Sbjct: 9   SGSEIRQKFLNFYAERQHKIMPSASLVPE-DPTVLLTIAGMLQFKPIFLGQRPREVNRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +W+   G+   +I R+   DNFW    TGPCGPCSEI++D    
Sbjct: 124 ERLIVSVFEEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ   N
Sbjct: 184 -KGDDNIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  + G+ Y  ++     + +VI DHLR+   LIADG+  +N GRGY
Sbjct: 243 NYETDLIFPIIKTAADLAGIDYAKSDDKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G T      +           YP   + + +I+  L+ E+ RF 
Sbjct: 303 ILRRLIRRVVRHGRLIGITGEFTTKVAETAIGLSEDVYPNTRERERVIKGELQREESRFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  +L+   + + ++G  AF LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 363 ETLERGEKLLAELLAK--QPDQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVDGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +  QR R++A    +   T +     L E+   T F+GYD                  
Sbjct: 420 AEMSAQRKRSQAAHETIDL-TVQGSLDKLAEQIHPTTFLGYDFPDS-------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V+A++  G+ V EAV+G +V++V DQTPFY E+GGQ+GD G      +
Sbjct: 465 ---------EATVEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +   D  KK   IF+H   VERG L   +++   ID   RR+   NH+ATHLL  AL  
Sbjct: 516 -IVRVDDVKKDSDIFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T+ EL+ +E+ VN  IA+  P     M  E+A
Sbjct: 575 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRVV          S  LCGGTHV++T EI L  IVSE+ I AG
Sbjct: 635 KNKGAIAMFGEKYAAVVRVVDYPG-----VSMELCGGTHVTNTAEIGLFKIVSETGIAAG 689

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ GQ    +L  +D  +K L   LK     +  R   +  E +  Q      K 
Sbjct: 690 IRRIEAVAGQSVLDYLNVRDAVVKELGDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 749

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +           ++ D+  +   +  VD + LK+  + LQ+K+    ++L  +S + 
Sbjct: 750 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVS-DG 808

Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   +  ++   +  A       AK+ GGGG GGRP++AQ+GG + +K  +A++  
Sbjct: 809 KVSLVAAFSPVVVKDKKLQAGKFIGAIAKLCGGGG-GGRPNLAQAGGRDPSKLPEALSTA 867

Query: 893 ASFL 896
            S L
Sbjct: 868 KSQL 871


>gi|229048096|ref|ZP_04193669.1| Alanyl-tRNA synthetase [Bacillus cereus AH676]
 gi|228723251|gb|EEL74623.1| Alanyl-tRNA synthetase [Bacillus cereus AH676]
          Length = 880

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEIKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K++  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKINPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|225873568|ref|YP_002755027.1| alanine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793929|gb|ACO34019.1| alanine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 982

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1009 (35%), Positives = 520/1009 (51%), Gaps = 149/1009 (14%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR TFL FF+  GH  + SSSL+P NDPTL+FTN+GM  FK++F G E   Y   T
Sbjct: 5   SGSDIRETFLRFFETKGHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGLEHRDYARAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T      +
Sbjct: 65  TSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKADAIAYAWELVTSLDWLGI 124

Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            + +LY+T++        DEEA++LW+   G+ A++I      DNFW M +TGPCGPCSE
Sbjct: 125 PKEKLYVTIFKGENGVPRDEEAYELWRGQ-GVPAERIFEFGAKDNFWQMGDTGPCGPCSE 183

Query: 175 IFFDQG---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           IF+D G      PG      ++  RY+EIWNLVFMQF++    E  +LPK SIDTG GLE
Sbjct: 184 IFYDMGMDAAETPGVDKPFGQDDARYVEIWNLVFMQFDRSANGELALLPKPSIDTGAGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--------------------- 270
           R+A+VLQ K +N++ DLF  LIQ + ++TG++   +                        
Sbjct: 244 RLASVLQGKVSNFETDLFTPLIQKAAELTGVRVSQSASQQVSEPAKGSQGEGDVSGNDLS 303

Query: 271 -----------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
                                  + R+I DH R+++FLI+DG+LPANEGRGYVLR+I+RR
Sbjct: 304 RAAHGAKQEGVLAPEGKELTGNASLRIIADHARAATFLISDGVLPANEGRGYVLRKILRR 363

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
            + + RLLG  +P M  ++ A+  EM  AYPEL ++   + + + +E+ +F + L+ G  
Sbjct: 364 GIRHGRLLGQEQPFMGQMVYAVRDEMQVAYPELKESAERVAKVVEAEERQFARVLEVGSA 423

Query: 368 LLDGVLSH---------------------------------------------LGKDEIL 382
            LD ++                                                 +  +L
Sbjct: 424 QLDQLIRSEAAGNGSDSGDRWGSGAGTGDGAGFGDGSGFGGGSGSGAGFGDGSGSERRVL 483

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           +G  AF LY+T+GLPLD M D     G    D+  F +A  E+++RARA   G    +  
Sbjct: 484 HGREAFHLYETYGLPLDFMMDAARDAG-IDFDLTGFEEARAEEQARARASWKGGAKQSAS 542

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
            ++  L      T F GY  LR                         + V AIV+ G+ V
Sbjct: 543 PVYREL----PKTIFEGYGKLRVEG----------------------AEVLAIVKDGQGV 576

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIV 560
           + A  G  VEVV + T FYA++GGQ+GD G    D     +       K       H  V
Sbjct: 577 KAANPGDAVEVVLNATSFYADSGGQMGDHGWLYSDDHNSVVAEVSGCTKPVQGVFAHKAV 636

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
            R  L     +   +D   R     NH+ THLLH AL  +LG+HV Q GS + P  LRFD
Sbjct: 637 LRQTLALGDKVDTVVDADFRAATRRNHTGTHLLHAALREVLGTHVKQAGSLVEPGRLRFD 696

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED--AIASGAAALLGTKYNDRVRV 678
            +H   I   ELK IED +N  +  N  V T      D       A AL G KY +RVRV
Sbjct: 697 FSHFTQIADEELKDIEDLINRQVLVNTRVETIEDVPIDVAVNEYHAMALFGEKYGERVRV 756

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +     G  S+ LCGGTH  +TGEI ++ ++SE S+ +G+RR+EA+TG  A       
Sbjct: 757 VKI-----GDFSTELCGGTHTGATGEIGVVKLMSEGSVSSGVRRVEAVTGLGALDEFRRG 811

Query: 739 DEKLKSLASFLK-----VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SC 788
            + +  LA+ L           +  R+    EE +KL+    + +++     +       
Sbjct: 812 YQ-VAQLAAQLAPSAEMSPAEALQHRLAAQDEELKKLKRELDQVRMKSAASAVSGAANQA 870

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
            ++  V  ++  + ++D  ++++++D L+ ++ SG+++L    +E K ++++ VT+DL  
Sbjct: 871 AEVNGVKVLAQRVDQLDRGQMRTLVDNLRNQLGSGVVVLGSAQEEGKVALIVGVTKDLTG 930

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +  A  +    AK + GG GGGRP MA++GG + ++ D A+AGV   +K
Sbjct: 931 KVQAGKVVAQVAKQV-GGSGGGRPDMAEAGGKDASQLDAALAGVPEVVK 978


>gi|317128237|ref|YP_004094519.1| alanyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315473185|gb|ADU29788.1| alanyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 878

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/915 (38%), Positives = 533/915 (58%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+FF++ GH++ PS+SL+P  DPTL++ NSG+   K  F G+  P  
Sbjct: 1   MKKLSSAEVRQMYLDFFKEKGHDVEPSASLVPHEDPTLLWINSGVATLKKYFDGRVIPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAILWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +L +T+Y +D+EAF+LW K  GL   +IIR+   +NFW + E GPCGP +EIF
Sbjct: 117 WIGFDPEKLSVTIYPDDDEAFELWNKEIGLPESRIIRL--EENFWDIGE-GPCGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDHNDPELYPGGENERYLEIWNLVFSQFNHNADGSYMPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q+   N+D DLF  +I  +E ++G  Y     +    +VI DH+R+ +F I DG 
Sbjct: 234 MVSVIQDAKTNFDTDLFLPIIHETENISGSNYGKNAVDDTAFKVIADHIRTVTFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+P + + M   YPE+ + +  I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQIHIERPFMYELVPVVGSVMKEFYPEVTEKEAFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+        E+++G   F+LYDT+G P+D+ ++ +   
Sbjct: 354 IKNEEERFHETLNEGLAILTKVIEKAKGENKEVIDGVDVFRLYDTYGFPVDLTEEYVLEA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G + +D   F   +++QR RARA     GS  T+     L      ++F+GYDLL     
Sbjct: 414 GFS-VDRDGFESEMKKQRERARAARQDAGSMQTQDEI--LGNIKEESEFVGYDLLE---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              + ++V  IV+    V EA  G+KV+V+ D+TPFYAE+GGQ+
Sbjct: 467 -------------------IPAVVSVIVKDKAFVNEAKQGEKVQVITDRTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    + + L + +V+K   G  +H   V +G L   M+    +D QNR+ +  NH+
Sbjct: 508 ADKGSFENENVTLAVLEVKKAPNGQNLHTVEVIKGTLTKNMTFAAKVDAQNRKGVIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  D LRFD +H   I+  EL+ IE  VN+ +   + 
Sbjct: 568 ATHLLHQALKDVLGGHVNQAGSLVAQDRLRFDFSHFGQISEDELEKIESIVNEKVWDGIE 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   +  +A   GA AL G KY D VRVV V     G +S  LCGG HVS++ EI L 
Sbjct: 628 VQTMYKSLTEAKEMGAMALFGEKYGDTVRVVRV-----GDYSLELCGGCHVSNSAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE  I AG+RRIEA+T + A   + GQ + LK  A  LK    +V  R+E++ ++++
Sbjct: 683 KIVSEGGIGAGVRRIEAVTAKNAYQFMNGQLDVLKESAHLLKAKLNDVPFRIEQLQQQFK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L+  +     +L+  +         ++  ++ +   ++  D   L+ + D+L++KI+SG
Sbjct: 743 ELERENESFAAKLSQVEAGNVMDELKEVDGISILVKKVNVPDMNRLRQMADSLKEKIESG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  ++ + K +++  V++DL+   ++A ++ +  A   GGGG GGRP MAQ+GG + 
Sbjct: 803 ILVLAAVNND-KVNIITSVSKDLVKEGYHAGNIVKEVATRCGGGG-GGRPDMAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
           +K D+A+  V   LK
Sbjct: 861 SKLDEALKIVPDLLK 875


>gi|229019610|ref|ZP_04176423.1| Alanyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|229025848|ref|ZP_04182246.1| Alanyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228735459|gb|EEL86056.1| Alanyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228741690|gb|EEL91877.1| Alanyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 880

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDQAGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLTDGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGMHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V       +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQVGG-----YSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +S + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASVS-DDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229158004|ref|ZP_04286075.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228625457|gb|EEK82213.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 4342]
          Length = 880

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|89100981|ref|ZP_01173826.1| alanyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084317|gb|EAR63473.1| alanyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 877

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/911 (38%), Positives = 521/911 (57%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FLEFF++ GH + PS+ L+P +DP+L++ NSG+   K  F G+  P    +T
Sbjct: 5   TGSEIRRLFLEFFKEKGHSVEPSAPLVPHDDPSLLWINSGVATLKKYFDGRVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT       
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIDWAWEFLTDERWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +T++ EDEEAF +W    G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DKEKLSVTIHPEDEEAFSIWTNKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+E+WNLVF +F          LPK +IDTGMGLERMA+V
Sbjct: 178 PEYGDDQNDPELYPGGENERYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMASV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I A E+++G KY  +N      +VI DH+R+ +F I DG LP+N
Sbjct: 238 VQNVATNFDTDLFMPIIHAVEKISGSKYGESNEQDTAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +    P M  L+  +   M   YP++ +    I++ +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKQININRPFMFELVDVVGEIMADFYPQVTEKAEFIKKVIKNE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  V+    +    I+ G   F+LYDT+G P+++ ++     G+  
Sbjct: 358 EERFHETLNDGLSILSSVIKKEKEKGSNIIPGSDVFRLYDTYGFPVELTEEYAEEEGMK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F   +E QR RAR     +GS   ++    L +    ++F+GY+ L         
Sbjct: 417 IDQDGFEAEMEGQRERARTARQDVGSMKVQEGV--LGDIKTESRFVGYEGLE-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V  I++ G++ E A +G++V+++ DQTPFYAE+GGQ+ D G
Sbjct: 467 ---------------AKSVVAVIIKDGQVAEAAGAGEEVQLILDQTPFYAESGGQIADNG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+G+++ I DVQK   G  +H A+VE GIL TE  +   +D  +R ++  NH+ATHL
Sbjct: 512 VLEGEGVKVIIKDVQKAPNGQNLHSAVVESGILETEAGVTAKVDPDSRNKVIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS + PD LRFD +H   +   EL+ IE+ VN+ I  +L VV  
Sbjct: 572 LHQALKDVLGTHVNQAGSLVGPDRLRFDFSHFGQVKEDELEKIEEIVNEKIWSSLNVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  I+S
Sbjct: 632 NKGIDEAKAMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVRNTSAIGLFKIIS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA TG+ A   L  Q   L   A+ LK S  +V  RV+ +  E R+LQ 
Sbjct: 687 ESGIGAGTRRIEAATGEAAYKLLKEQVNILTEAAASLKSSPRDVASRVDALLGEMRQLQR 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L   +         +   + +++  +   D   L+++ D L++K+ S +++L
Sbjct: 747 ENESLSAKLGNIEAGSLVSKAKEENGITYLAAKVQAADMNNLRNMADDLKQKLGSAVVVL 806

Query: 828 VGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  E K +++  VT+D +   ++A  + +  A   GGGG GGRP MAQ+GG +  K +
Sbjct: 807 GSV-NEGKVNLIAAVTKDYIEKGYHAGKVIKEVAARCGGGG-GGRPDMAQAGGKDPEKLE 864

Query: 887 QAIAGVASFLK 897
            A+  V  ++K
Sbjct: 865 SALQFVEEWVK 875


>gi|284050469|ref|ZP_06380679.1| alanyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 876

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/906 (37%), Positives = 494/906 (54%), Gaps = 51/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL F+ +  H+++PS+SL+P  DPT++ T +GM+ FK IF GQ        T
Sbjct: 9   SGSEIRQKFLNFYAERQHKIMPSASLVPE-DPTVLLTIAGMLQFKPIFLGQRPREVNRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ ED+EAF +W+   G+   +I R+   DNFW    TGPCGPCSEI++D    
Sbjct: 124 ERLIVSVFKEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ   N
Sbjct: 184 -RGDDHIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  + G+ Y  ++     + +VI DHLR+   LIADG+  +N GRGY
Sbjct: 243 NYETDLIFPIIKTAADLAGIDYAKSDNKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G        +     +     YP   + + +I+  L+ E+ RF 
Sbjct: 303 ILRRLIRRVVRHGRLIGIRGEFTTQVAETAISLSQDVYPNTRERERVIKGELQREESRFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  +L    + E ++G  AF LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 363 ETLERGEKLLAELLEK--QPEQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +  QR R++A    +   T +     L E+   T F+GYD                  
Sbjct: 420 AEMSAQRKRSQAAHETIDL-TVQGSLDKLAEQIHPTAFLGYDFPDS-------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V+A++  G+ V EAV+G +V++V DQTPFY E+GGQ+GD G      +
Sbjct: 465 ---------EATVEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +   D  KK   IF+H   VERG L   +++   ID   RR+   NH+ATHLL  AL  
Sbjct: 516 -IVRVDDVKKDSDIFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T+ EL+ +E+ VN  IA+  P     M  E+A
Sbjct: 575 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRVV          S  LCGGTHV++T EI L  IVSE+ I AG
Sbjct: 635 KNKGAIAMFGEKYAAVVRVVDYPG-----VSMELCGGTHVTNTAEIGLFKIVSETGIAAG 689

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ GQ    +L  +D  +K L+  LK     +  R   +  E +  Q      K 
Sbjct: 690 IRRIEAVAGQSVLDYLNVRDTVVKELSDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 749

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +           ++ D+  +   +  VD + LK+  + LQ+K+    ++L  +S + 
Sbjct: 750 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVS-DG 808

Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   +  ++   +  A       AK+ GGGG GGRP++AQ+GG + +K  +A++  
Sbjct: 809 KVSLVAAFSPVVIKDKKLQAGKFIGAIAKLCGGGG-GGRPNLAQAGGRDPSKLPEALSTA 867

Query: 893 ASFLKK 898
            S L +
Sbjct: 868 KSQLIE 873


>gi|169831075|ref|YP_001717057.1| alanyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
 gi|205830046|sp|B1I370|SYA_DESAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169637919|gb|ACA59425.1| alanyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
          Length = 880

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/908 (39%), Positives = 542/908 (59%), Gaps = 50/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N S IR  +LEFF   GH ++PS+SLIP NDPTL++T++GMVPFK  FTG   P ++ V
Sbjct: 1   MNSSEIRKRYLEFFAARGHRVIPSASLIPGNDPTLLWTSAGMVPFKPYFTGVATPEFRRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D++ VGRT RHHTFFEMLGNFSFG YFKERAI  AW+ +T++  L 
Sbjct: 61  VTCQKCLRT----PDIEMVGRTARHHTFFEMLGNFSFGDYFKERAIPWAWEFVTRDLGLA 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+I+VY +D EAF  W+ + G+ A++I+R+  + NFW +   GPCGPCSE+++D+G 
Sbjct: 117 PEHLWISVYLDDNEAFDHWRGL-GVPAERIVRLGRDTNFWEIG-VGPCGPCSEVYYDRGP 174

Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                    G   + +R++EIWNLVF+Q+ +    +   L    IDTGMGLER+A+VLQ 
Sbjct: 175 AYGCESASCGPGCDCDRWLEIWNLVFIQYFRNEAGDYSPLESPGIDTGMGLERVASVLQG 234

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N+D DLF+ LI  +  V G++Y  +       +VI DH R+ +F IADG+LP+NEGR
Sbjct: 235 VNTNFDTDLFRGLIDYTAGVLGVRYGDDPAGDAALKVIADHGRAITFAIADGVLPSNEGR 294

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+  A LLG  +P +  +  A+  +M  AYPEL  A+  + + +R E+ER
Sbjct: 295 GYVIRRLLRRAVRKALLLGREKPFLEGVALAVIEQMAGAYPELETARDSVRKVVRFEEER 354

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL +G  ++  +++     K   L G  AF+LYDT+G PL++ ++I   +GL  +D 
Sbjct: 355 FRQTLTQGNEIIGRLIAEARAEKRSTLEGAAAFQLYDTYGFPLELTREICAEQGL-AVDE 413

Query: 416 ISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F  AL+ Q+ +AR+           E  + +L+++ G T+F+GY+ L           
Sbjct: 414 AGFEAALKAQQQKARSSRRETRYVEERETFFRNLRDEIGLTRFVGYEQLEAD-------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V+A+++ G+ V  A SG++V +V D TP YAE+GGQ+GD G  
Sbjct: 466 ---------------AGVRALIRDGQRVPAAGSGEQVSLVVDTTPCYAESGGQVGDHGLI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+ +R +ITD     EG+ VH  +VE G+L     + + +D   RR++  NH+ATHLLH
Sbjct: 511 EGENVRGRITDTFAPVEGLHVHEVVVEAGVLEEGARIRILVDGSRRRKICRNHTATHLLH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L  +LG+HV+Q GS + P+ LRFD TH +P++ AEL  +E  +N+I+  NL V +   
Sbjct: 571 RTLKAVLGTHVNQAGSLVAPERLRFDFTHIQPLSEAELAEVESRINEIVLSNLRVESFQT 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A   GA AL G KY D VRVV ++       S  LCGGTHV ST EI  + I +ES
Sbjct: 631 SFDRARELGAVALFGEKYGDLVRVVQIDG-----VSMELCGGTHVLSTAEIGPVKITAES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RR+EA+TG  A + L  ++E+L  +A  ++V    +V  VE + +  +KLQ  +
Sbjct: 686 SVGAGLRRLEAVTGMEALAFLNSRNEQLHRIAQAVRVPVSELVVHVERLLDHQKKLQREN 745

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + + +L V ++            V  ++  +   D  EL+S++D L++++ S +I+L  
Sbjct: 746 EQLQDRLQVYEVKELLDRASTHEGVRILATSVRARDMAELRSMLDLLRERLGSAVIVLGS 805

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K S++  V+ DL+ R  +A  + + +A V GGGG GGRP MAQ+GG N  K  +A
Sbjct: 806 AVN-GKVSLVASVSRDLVARGLHAGAIIKEAAAVAGGGG-GGRPEMAQAGGKNPEKLTEA 863

Query: 889 IAGVASFL 896
           +      +
Sbjct: 864 LEKARQVV 871


>gi|291570537|dbj|BAI92809.1| alanyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 878

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/906 (37%), Positives = 494/906 (54%), Gaps = 51/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL F+ +  H+++PS+SL+P  DPT++ T +GM+ FK IF GQ        T
Sbjct: 11  SGSEIRQKFLNFYAERQHKIMPSASLVPE-DPTVLLTIAGMLQFKPIFLGQRPREVNRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F L  
Sbjct: 70  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ ED+EAF +W+   G+   +I R+   DNFW    TGPCGPCSEI++D    
Sbjct: 126 ERLIVSVFKEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYDFHPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ   N
Sbjct: 186 -RGDDHIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  + G+ Y  ++     + +VI DHLR+   LIADG+  +N GRGY
Sbjct: 245 NYETDLIFPIIKTAADLAGIDYAKSDNKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G        +     +     YP   + + +I+  L+ E+ RF 
Sbjct: 305 ILRRLIRRVVRHGRLIGIRGEFTTQVAETAISLSQDVYPNTRERERVIKGELQREESRFL 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  +L    + E ++G  AF LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 365 ETLERGEKLLAELLEK--QPEQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVEGFE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +  QR R++A    +   T +     L E+   T F+GYD                  
Sbjct: 422 AEMSAQRKRSQAAHETIDL-TVQGSLDKLAEQIHPTAFLGYDFPDS-------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V+A++  G+ V EAV+G +V++V DQTPFY E+GGQ+GD G      +
Sbjct: 467 ---------EATVEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +   D  KK   IF+H   VERG L   +++   ID   RR+   NH+ATHLL  AL  
Sbjct: 518 -IVRVDDVKKDSDIFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T+ EL+ +E+ VN  IA+  P     M  E+A
Sbjct: 577 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRVV          S  LCGGTHV++T EI L  IVSE+ I AG
Sbjct: 637 KNKGAIAMFGEKYAAVVRVVDYPG-----VSMELCGGTHVTNTAEIGLFKIVSETGIAAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ GQ    +L  +D  +K L+  LK     +  R   +  E +  Q      K 
Sbjct: 692 IRRIEAVAGQSVLDYLNVRDTVVKELSDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 751

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +           ++ D+  +   +  VD + LK+  + LQ+K+    ++L  +S + 
Sbjct: 752 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVS-DG 810

Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   +  ++   +  A       AK+ GGGG GGRP++AQ+GG + +K  +A++  
Sbjct: 811 KVSLVAAFSPVVIKDKKLQAGKFIGAIAKLCGGGG-GGRPNLAQAGGRDPSKLPEALSTA 869

Query: 893 ASFLKK 898
            S L +
Sbjct: 870 KSQLIE 875


>gi|218899557|ref|YP_002447968.1| alanyl-tRNA synthetase [Bacillus cereus G9842]
 gi|218542758|gb|ACK95152.1| alanyl-tRNA synthetase [Bacillus cereus G9842]
          Length = 880

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V++GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKKGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H   VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     +  +A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 NVEISQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|257468000|ref|ZP_05632096.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062286|ref|ZP_07926771.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313687962|gb|EFS24797.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 866

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/909 (36%), Positives = 514/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF+   H+   S+SLIP +D TL+ T +GMVPFK  F GQ++  Y  
Sbjct: 1   MLTGNQIRKEFIEFFEAKHHKHFESASLIP-DDATLLLTVAGMVPFKPYFLGQKEAPYPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L+++V+  D+EA ++W +      ++++R+  ++N+W+   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVSVFTTDDEAEQIWIEKCNFPKERLVRLGEDENWWAAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A ++
Sbjct: 176 PAYGGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAMV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K+NN++ DL   L++ + ++T  +Y  +     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKSNNFETDLLFPLVEEAVKLTNSQYGRDEEENFSLKVITDHSRAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ + RLLG +E  +  ++  + + M +AYP+L      I++ ++ E+
Sbjct: 296 GRGYVLRRILRRAVRHGRLLGQSELFLYKMVDKVVSMMENAYPDLRSNIDHIKKVVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F +TLD+G+ L++  +  L    I  L+G+V FKLYDT+G P ++ ++I   +    I
Sbjct: 356 EKFSRTLDQGMQLVNQEIEKLKAAGITKLDGEVTFKLYDTYGFPYELTEEICQEK-EIEI 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   + EQ+ +ARA    +     +       +KYGAT+F GY  L+ +  +   R
Sbjct: 415 SKEEFEAKMTEQKEKARAAREVVMEKGQDSFIEEFYDKYGATEFTGYTTLKDTGKLLSAR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                  + G+            ++FD TPFY E+GGQ  D G 
Sbjct: 475 DG---------------------KDGKK----------LMIFDTTPFYGESGGQAADIGI 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G+G   ++ DVQ K +GIF H   V +G         L +D  NR   + NH+ATHLL
Sbjct: 504 ITGNGFEGKVIDVQ-KQKGIFTHTVEVLKGTPIEGEEYFLEVDEANRMATAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS +  + LRFD  H + +T  EL+ +E+ VN+ IA+ + V    
Sbjct: 563 HEALREVLGSHVQQAGSFVNGERLRFDFNHYEAMTGEELEKVEELVNEKIAEAINVSVAD 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++A  +GA AL G KY D VRVVSVE       S  LCGGTH+ + G+I L  I SE
Sbjct: 623 MSMDEAKKAGATALFGDKYGDVVRVVSVEGF-----SIELCGGTHIDNIGKIGLFKIESE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + I AGIRRIEA+TG+ A   +   +  LK++   +K  + N++ RVE++ E  ++    
Sbjct: 678 AGIAAGIRRIEAVTGKGAYKAVKNIEMLLKNVEKVVKSDEANLLDRVEKMVETIKENSKE 737

Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K     ++      +   I  V  +        + +L+ ++D ++ K+ + +++L 
Sbjct: 738 LEELKSRFTQIEAQALAENSEVINGVTVIMKTFKTTTADDLRKMVDYVKDKMANTVVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             +   KA     VT++L  +  A +L + +A V+ GG GGGRP  AQ+GG +  K  +A
Sbjct: 798 SGA--DKAIFAAGVTKELTSKVKAGNLVKEAA-VITGGNGGGRPDFAQAGGKDATKIQEA 854

Query: 889 IAGVASFLK 897
           +  V   LK
Sbjct: 855 MNAVKETLK 863


>gi|309389100|gb|ADO76980.1| alanyl-tRNA synthetase [Halanaerobium praevalens DSM 2228]
          Length = 877

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/910 (39%), Positives = 537/910 (59%), Gaps = 50/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L+FF+  GH +L S+ LIP +DPTL++ N+GM PFK  F G  +P    +
Sbjct: 3   KSGDEIRQAYLDFFESKGHLILDSAPLIPKDDPTLLWINAGMAPFKPYFNGSLEPPKTRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           +T QKC+R     ND++NVG+T RHHT+FEMLGNFSFG YFKE AI  AW+ +T+  +L+
Sbjct: 63  STSQKCIRT----NDIENVGKTARHHTYFEMLGNFSFGDYFKEEAISWAWEFVTEVLELE 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+IT+Y+EDEEAF +W    GL  ++I+R+   +NFW +  TGPCGPCSEI +D+G 
Sbjct: 119 EDRLWITIYEEDEEAFAIWHDKVGLDEERIVRMGKKENFWQIG-TGPCGPCSEIHYDRGP 177

Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                       EG+RY+EIWNLVF Q+      E   LP  +IDTGMGLER+A++LQ  
Sbjct: 178 EAGESEEDVLGGEGDRYLEIWNLVFTQYNYTEAGEYQELPNKNIDTGMGLERVASILQAT 237

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
             N++ DL K LI    +++G+ Y+ +     ++RVI DH+RS+S  I+DG LP+NEGRG
Sbjct: 238 ETNFETDLIKPLIDQVVEMSGIDYQKDEQSLTSYRVIADHIRSASVAISDGALPSNEGRG 297

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YV+RR++RRA  Y R LG+ EP +  L+      + +  P+L +    ++  ++SE++ F
Sbjct: 298 YVIRRLIRRAARYGRKLGFKEPFLYQLVEKTAEIVAAVAPDLKKQLAHVKNVIKSEEKSF 357

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL++GL +L+ +L++L     E+++G  AF+LYDT+G PLD+ +DI    G+  +D  
Sbjct: 358 LQTLEQGLNILEDILNNLKAENKEVISGQDAFRLYDTYGFPLDLTEDIAAEEGIK-VDQK 416

Query: 417 SFNQALEEQRSRARAHSLG--LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
            F + +E QR RAR         +G  EKI+   +++  A  F GY  L+          
Sbjct: 417 GFEKEMEAQRKRAREARAETSFNNGEIEKIYAEYQDQIEARNFTGYHSLQ---------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  +V+  +  +   +G K E++  +TPFYAE+GGQLGD G  
Sbjct: 467 -------------AKAQIVGLVKAEKAQKSLKAGDKAEIILTKTPFYAESGGQLGDKGVI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D    ++ D  KKAE +FVH   V++G +     +   + +  R   + +HSATHLLH
Sbjct: 514 KNDQFEAEVKDTVKKAE-VFVHQVEVKKGKIEVGEEVTAVVYHNRREATARHHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q+GS + PD LRFD TH   ++S EL+ +E  VN  I +N PV T I 
Sbjct: 573 KALKEVLGEHVNQSGSLVAPDRLRFDFTHFSALSSQELEELERKVNKAIRENYPVETEIK 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY   VRVV +     G  S  LCGGTHV +TG+I    I++ES
Sbjct: 633 AIDEAKDMGATALFGEKYGQEVRVVKM-----GDFSLELCGGTHVRATGDIGAFKIINES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG+ A  +   + E L  LA+ LK    N++ RV+++ +E ++L+   
Sbjct: 688 GIAAGVRRIEAVTGEYALDYFNSKLELLNQLAAELKTDPNNLLQRVKQVKKEQKELEKEL 747

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L             ++A +N ++  + ++D+  L+++ D L+ KI SGII+L  
Sbjct: 748 ETMKEKLAGSKKDDLIDQLEEVAGINLLTAELEDLDNSALRNLTDQLKDKIDSGIIVLAS 807

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              E K   +  V+EDL+ + F A ++    AK+ GGGG GGRP MAQ+GG        A
Sbjct: 808 -KGENKVIFVASVSEDLIAKGFKAGNIIAQVAKIAGGGG-GGRPDMAQAGGSKPENTSAA 865

Query: 889 IAGVASFLKK 898
           +A V + +K+
Sbjct: 866 LAEVKNIIKE 875


>gi|118479549|ref|YP_896700.1| alanyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|196034339|ref|ZP_03101748.1| alanyl-tRNA synthetase [Bacillus cereus W]
 gi|196044886|ref|ZP_03112120.1| alanyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|218905583|ref|YP_002453417.1| alanyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225866370|ref|YP_002751748.1| alanyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|205829983|sp|A0RJ00|SYA_BACAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118418774|gb|ABK87193.1| alanyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|195992881|gb|EDX56840.1| alanyl-tRNA synthetase [Bacillus cereus W]
 gi|196024374|gb|EDX63047.1| alanyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|218536398|gb|ACK88796.1| alanyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225787137|gb|ACO27354.1| alanine--tRNA ligase [Bacillus cereus 03BB102]
          Length = 880

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|56421091|ref|YP_148409.1| alanyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|81557818|sp|Q5KWU5|SYA_GEOKA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56380933|dbj|BAD76841.1| alanyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 887

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/924 (38%), Positives = 519/924 (56%), Gaps = 67/924 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTSAQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPEN 60

Query: 59  QAVT---------TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQL 109
             +            QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  
Sbjct: 61  PRICIVPENPRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHW 116

Query: 110 AWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           AW+ LT  K    D  RL +TV+ EDEEA+ +W+   GL  ++IIR+    NFW + E G
Sbjct: 117 AWEFLTSDKWIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-G 173

Query: 168 PCGPCSEIFFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           P GP +EIF+D+GE               E +RY+E+WNLVF QF          LPK +
Sbjct: 174 PSGPNTEIFYDRGEAFGNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKN 233

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRS 281
           IDTGMGLERM ++LQ+   N++ DLF  +I+A+EQ+ G +Y  + +  V  +VI DH+R+
Sbjct: 234 IDTGMGLERMCSILQDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRA 293

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ 
Sbjct: 294 VTFAIGDGALPSNEGRGYVLRRLLRRAVRYAKHIGIDRPFMYELVPVVGEIMHDYYPEVK 353

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLD 399
           +    I   +R+E+ERF +TL  GL +L  V+    +   +++ G+ AF+LYDT+G P++
Sbjct: 354 EKADFIARVIRTEEERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIE 413

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + ++     G+  +D   F + +E QR RARA    + S   +     L +    ++F+G
Sbjct: 414 LTEEYAAEAGMT-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKDESRFVG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L                         +S V AIV+ G +VEE  +G++ +++ D TP
Sbjct: 471 YDEL-----------------------VAASTVIAIVKDGRLVEEVKAGEEAQIIVDVTP 507

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE+GGQ+ D G    +     + DVQK   G  +H  IVERG ++        +D   
Sbjct: 508 FYAESGGQIADQGVFESETGTAVVKDVQKAPNGQHLHAIIVERGTVKKGSRYTARVDEAK 567

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R ++  NH+ATHLLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  V
Sbjct: 568 RMRIVKNHTATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIV 627

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ I ++LPV       E+A A GA AL G KY D VRVV V     G +S  LCGG HV
Sbjct: 628 NEQIWKSLPVDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHV 682

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T  I L  IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R
Sbjct: 683 PNTSAIGLFKIVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNAR 742

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMD 814
           ++ ++ E ++L+  +     +L   +          +  V  ++  +   D  +L+++ D
Sbjct: 743 LDGLFAELKELERENESLAARLAHMEAEHLTRQVKDVNGVPVLAAKVQANDMNQLRAMAD 802

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
            L++K+ + +I+L    +  K  ++  VT+DL+ + F+A  L +  A   GGGG GGRP 
Sbjct: 803 DLKQKLGTAVIVLASA-QGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRCGGGG-GGRPD 860

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           +AQ+GG + +K  +A+  V +++K
Sbjct: 861 LAQAGGKDPSKVGEALGYVETWVK 884


>gi|206889357|ref|YP_002248379.1| alanyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741295|gb|ACI20352.1| alanyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 875

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/908 (39%), Positives = 538/908 (59%), Gaps = 46/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL++F   GHEL+ SS LIP +DP+L+FTN+GMV FK +F G+E+  Y   
Sbjct: 1   MQSSEIRKLFLDYFVSKGHELVKSSPLIPKDDPSLLFTNAGMVQFKRVFLGEEQRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKH+DL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L 
Sbjct: 61  TTCQKCIRAGGKHSDLENVGFTARHHTFFEMLGNFSFGDYFKRDAILFAWELLTEHFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L++++Y +D+EA ++W++  G+ +++I+R+   DNFW M +TGPCGPCSEI  DQGE
Sbjct: 121 KEKLWVSIYKDDDEAAEIWEEEIGIPSERIVRLGEKDNFWQMGDTGPCGPCSEIIIDQGE 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++E+WNLVFMQ+ +  + +   LPK SIDTGMGLER+  V Q 
Sbjct: 181 DFGCGQPDCSVGCDCDRFLELWNLVFMQYNRDEEGKLTPLPKPSIDTGMGLERITAVKQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K  N+D DLF+ +I        +KY  +    ++ +VI DH+R+++FL+A+G++P+NEGR
Sbjct: 241 KRTNFDTDLFEPIISEICSTLNVKYGKDRKTDISIKVIADHIRAATFLVAEGLIPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA  + +LL Y +      +  +  ++G  YPE++  +  IE+ ++ E+ER
Sbjct: 301 GYVLRRIIRRAGRHIKLLEYDKTAFYRFVEPVVYKLGEVYPEIVSERERIEKIIKIEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F ++L++   + D ++++L K +  ++ G   FKLYDT GLP D+++++     L  ID 
Sbjct: 361 FLRSLEKAQQIFDDIINNLKKTDSKLIPGHEIFKLYDTFGLPFDLIKEMAQDSEL-QIDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           I F Q L +QR RARA       G  E ++  L+ +    +FIGY               
Sbjct: 420 IGFQQELNKQRERARAAQKSEEVGIGE-VYKQLRPQSENLRFIGYTDYE----------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + + AIV+  E V E    ++ E+   +TPFYAE+GGQ+GDTG  I
Sbjct: 468 ------------TETDIYAIVKNSERVNELNKDEEGEIFLFKTPFYAESGGQVGDTGMII 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +  + ++ D  KK  G+  H   V  G ++    +   ID + R+ +  NH+ATHLLH 
Sbjct: 516 SNSGKAEVYDT-KKISGLHCHKVRVIEGTIKEGDKVFAKIDLERRKAIKRNHTATHLLHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL T+LG HV Q GS + PD LRFD TH + +   EL+ IE  VN+ I +NLPV   I +
Sbjct: 575 ALRTVLGEHVKQAGSLVAPDRLRFDFTHFEAVNDEELREIERIVNEKILENLPVKIEIKS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A+  G  AL   KY D VRVV +        S  LCGGTH  STGEI   YIVSE S
Sbjct: 635 LDEALNEGVTALFEDKYEDTVRVVKIVG-----FSKELCGGTHCDSTGEIGSFYIVSEGS 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +GIRRIEA+TG  A  +     E+LK+++S LK      V  VE +  E ++ Q    
Sbjct: 690 VASGIRRIEAVTGIEAFKYSNINREQLKAISSILKS--AEPVKAVERLVAELKEKQQEIE 747

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +L  +++        +I  V  ++  +  VD K L+++ D L++K+   II+L+  
Sbjct: 748 VLKNKLISQNIEEIVKQAKEIDGVKALAVKLDGVDLKSLRTLSDKLKEKLHPAIILLIS- 806

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + +  +L+ VT+D+ ++++A  L R   + + GG GGGR   AQ G P+G   ++   
Sbjct: 807 KADGQGILLLSVTKDITNKYDAGKLMRNIVQAV-GGKGGGRQETAQGGCPDGESLEKVSE 865

Query: 891 GVASFLKK 898
              S ++K
Sbjct: 866 IFYSLIEK 873


>gi|148270517|ref|YP_001244977.1| alanyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|205830276|sp|A5IMH8|SYA_THEP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|147736061|gb|ABQ47401.1| alanyl-tRNA synthetase [Thermotoga petrophila RKU-1]
          Length = 863

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/902 (39%), Positives = 534/902 (59%), Gaps = 48/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V
Sbjct: 4   MTSEEIREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + 
Sbjct: 63  ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + +L+++VY+EDEEAF++W +  GL   KI+R+   DNFW     TGPCGP +EIF+D G
Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTG 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C  G     +    R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   ++
Sbjct: 179 YSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D DLF+ +I   E++TG+ Y+ +    V+ RVI DH+R+ +FLI++G+ P+NE
Sbjct: 239 QGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHMRAITFLISEGVFPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRAM +  LLG +EP +  ++ A+  +MG  YPE+++ + +++E L +E+
Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVAEKMGKVYPEIVRGESMVKEVLSAEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF KTL++G+ + D ++   G+   ++ + AFKLYDT+GLPL++  +I   +G   +D+
Sbjct: 359 SRFLKTLEQGMKVFDEIVEKKGR---IDSEDAFKLYDTYGLPLELTLEIAREKG-VEVDV 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +EEQ+ ++R    G         +     K   T+F GY+ L            
Sbjct: 415 KEFNKYMEEQQRKSRVAL-GDVEFARRYEYLEELPKDFRTEFTGYEKLED---------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V  I +  + VE+A     VEVVF +TPFYAE GGQ+ DTG   
Sbjct: 464 -------------EGEVVLIAKNEKAVEDATE-DAVEVVFSKTPFYAEKGGQVSDTGTVE 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +  +  +  V + +EG+ VH   V  G LR    +VL +D + R     NH+ATHLLH 
Sbjct: 510 WEDGKALVEYVFEASEGVIVHRIKVLAGTLRRGQKVVLRVDKKRREATMRNHTATHLLHA 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD LRFD TH K ++ AE++ +E+ VN+ I + +PV  R  +
Sbjct: 570 ALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSMAEIEQVENLVNEWIMEAIPVEVRYTS 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A+ SG  AL   KY D V        +    S  LCGGTHVS+TG+I L  I+SE S
Sbjct: 630 YEEAVKSGVVALFTEKYGDVV-----RVVEVPGVSKELCGGTHVSNTGQIGLFKIISEES 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TG      L  Q + +  L   L   +  +  RV  + E+ ++L+   +
Sbjct: 685 VSSGVRRIEAVTGFSTLELLRNQKKLIDQLKEILGAREDELTDRVLGLREKVKELEKKLS 744

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           + ++      +   +         +  +V++K L  + D + KK + GI++L+    E K
Sbjct: 745 QGRISEEKIAMKQLE-DGARVFYAVFEDVEAKHLGGIADNVLKKEREGIVILLS-KFEDK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+++ V+E+LLD+++A  +AR  AK L GG GGGR + AQ+GG +  K    +  +  F
Sbjct: 803 VSLVVKVSENLLDKYDASSIARNIAKEL-GGSGGGRRNFAQAGGRHPEKIRGVLERLEEF 861

Query: 896 LK 897
           L+
Sbjct: 862 LR 863


>gi|301055897|ref|YP_003794108.1| alanyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300378066|gb|ADK06970.1| alanyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 880

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G+L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGMLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229105022|ref|ZP_04235676.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228678399|gb|EEL32622.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-28]
          Length = 880

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYCNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHKGFEAEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S + A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNIVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L    ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKGAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     + E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 NVEISQKSIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++LV +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLVSV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|313680711|ref|YP_004058450.1| alanyl-tRNA synthetase [Oceanithermus profundus DSM 14977]
 gi|313153426|gb|ADR37277.1| alanyl-tRNA synthetase [Oceanithermus profundus DSM 14977]
          Length = 895

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/926 (36%), Positives = 507/926 (54%), Gaps = 70/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--P--- 56
              + IR  +L FF++ GH  LP  SLIP +DPTL+F  +GM P K  F G +   P   
Sbjct: 1   MTTAEIREKYLRFFEEKGHLRLPPFSLIPEDDPTLLFIVAGMAPLKPYFMGAKPVFPGHE 60

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             ++ V T QKC+R G    D++NVGRT RH+TFFEMLGNFSFG YFK+ AI  AW+ +T
Sbjct: 61  GEHRRVVTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAIAWAWEFVT 116

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGP 168
             K   LD  RLY+TVY +D+EA+ +W+ + G+  ++I R   ++NFW     S    GP
Sbjct: 117 DPKWLGLDPDRLYVTVYKDDDEAYAIWRDVVGVPEERISRWDEDENFWPAGAISEGPNGP 176

Query: 169 CGPCSEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNK----QERFILPKM 222
           CGPCSEIF+D+G               G+R++EIWNLVF QF +            LP+ 
Sbjct: 177 CGPCSEIFYDRGPGFGSPDETGPNTGSGDRFVEIWNLVFTQFNRSGPIPGEGVLEPLPQK 236

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSS 282
           +IDTGMGL R+A +LQ+  + Y  D FK LI    + +G+ Y+G   V+HRVI DH+R+ 
Sbjct: 237 NIDTGMGLYRVAAILQDVEDFYATDTFKPLIDLVAERSGVPYKGALSVSHRVIADHVRAV 296

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
              ++DG   +N GRGYV+RR++RRA+ +  LLG  EP +  L P +   +G  YPE+ +
Sbjct: 297 VAALSDGATFSNTGRGYVIRRLLRRAVRHGYLLGIKEPFLHELAPVVAELLGDYYPEMKE 356

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
               ++  +R+E+ RF +TL++G+  L+ +L+ L + ++L G+ AF+L+DT+G PLD+ +
Sbjct: 357 QLASVQPAIRAEEARFLETLEQGIRRLESLLAGLKEGDVLPGEEAFRLHDTYGFPLDLTE 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGY 460
           +I   RG+  +D   F +A+ EQ  RARA S   G            + E +GAT+F GY
Sbjct: 417 EIAAERGVK-VDREGFERAMREQVERARAASAFSGDVFAAAAPALERVFEDHGATEFTGY 475

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           + L                            V  I+Q    ++   +GQ  +VV D+TPF
Sbjct: 476 ERLED-----------------------EGKVLLILQGEAELDRLEAGQGGQVVLDRTPF 512

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE GGQ+GD+G     G R ++   +K  +G+ +H   VE G L    ++   +D + R
Sbjct: 513 YAEGGGQVGDSGYLEWPGGRARVVTTKKSKQGLHLHEVEVEEGALAVGAAVRAVVDPERR 572

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                NH+ATHLLH AL  +LG  V Q GS + PD LRFD TH+  ++  E++ +E  VN
Sbjct: 573 -CTEKNHTATHLLHAALRAVLGPQVRQAGSLVAPDRLRFDFTHAAALSPEEVRKVELLVN 631

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSAL 693
             +  + PV    M  E+A  +GA AL G KY D VRVV VE         +  V S  L
Sbjct: 632 RWVQADFPVSWTFMPLEEAKKAGAMALFGEKYADTVRVVKVEGSPDTAGILEAEVRSMEL 691

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG HV  TGEI    I +E ++ AG+RRIEA+TG+ A  +     ++  +LA  L  S 
Sbjct: 692 CGGCHVRRTGEIGYFVITAEEAVSAGVRRIEALTGEAAVRYARDLLDRDAALARALGTSL 751

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSK 807
             +  R+E++ +E ++L+  + K    L    L      +  +     +++   + +D  
Sbjct: 752 EGLPQRIEKLQQELKQLRRENEKLAADLARAQLGGGGAPAVREAGGWRYVAAAFAGLDVP 811

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGG 866
            L+ V D + ++    ++++         ++++ V+ D + R   A  + R  A+   GG
Sbjct: 812 SLRQVADEILERYGVDLVVVGA-----GGALIVKVSPDAVQRGLAAGQVIRALAER-TGG 865

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGV 892
            GGG+PH+AQ GG +  KA  A+  V
Sbjct: 866 RGGGKPHLAQGGGFDVEKALAALDEV 891


>gi|49481702|ref|YP_038439.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|59798537|sp|Q6HDD7|SYA_BACHK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49333258|gb|AAT63904.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 880

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ + TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLNVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRGSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|228948102|ref|ZP_04110386.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123929|ref|ZP_04253121.1| Alanyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228659231|gb|EEL14879.1| Alanyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228811460|gb|EEM57797.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 880

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADCGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|296327899|ref|ZP_06870435.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296155033|gb|EFG95814.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 867

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/908 (36%), Positives = 504/908 (55%), Gaps = 58/908 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAEKIWVEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y        + +VI DH R+ +FL+ DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAGKITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGYT+  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYTDLFMYKMVDKVVEKFEVAYPDLRKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLINGKNKLDGEISFKLYDTYGFPYELTEEIAEERGITVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTEFTGYEKTEDEGKLLSLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +   +                               K  ++FD+TPFY E+GGQ+GD G 
Sbjct: 475 EAKDR-------------------------------KYLLIFDKTPFYGESGGQIGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DV +K + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFEAKVLDV-QKQKDIFIHTVKFEKGIPEENKTYKLEVDVIKRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS +  + LRFD +H + +T  +L  IED VN  I + + VV   
Sbjct: 563 HKALREVVGTHVQQAGSLVDSEKLRFDFSHYEALTEEQLSKIEDIVNKKIREGIEVVVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  I SE
Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVHG-----FSTELCGGTHIDNIGKIGLFKITSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      + + LK++   LK +  N+V +VE+  E  +  +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEADILKNIEKKLKATNSNLVEKVEKNLETLKDTEKE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I  V  +     +  +++L++++D ++   +  I++L 
Sbjct: 738 LEALKQKLALFETKAAISGMEEIGGVKVLIAAFKDKSTEDLRTMIDTIKDNNEKAIVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-ITGGKGGGRPDFAQAGGKDEGKLLDA 854

Query: 889 IAGVASFL 896
              V   +
Sbjct: 855 FKEVREII 862


>gi|294628346|ref|ZP_06706906.1| alanyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292831679|gb|EFF90028.1| alanyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 890

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/924 (36%), Positives = 514/924 (55%), Gaps = 64/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA ++W ++ G+  ++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYKDDDEAEQIWHEVVGVPKERIQRLGMKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+       N +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTGKDNFEILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I+ + ++TG+ Y   +   V+ RV+ DH+R+++ LI D
Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVIKKATELTGVAYGDAHASDVSLRVVTDHMRTATMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVRDLIDVVVNMMGQQYPELVTDRERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+  F KTL  G  +LD  ++   +   ++L+GD AF L+DT G P+D+  ++  
Sbjct: 355 KVALAEENAFLKTLKAGTNILDTAVTETKQSGGKVLSGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T FIGY    G
Sbjct: 415 EQGLS-VDEEGFRRLMKEQRERAKADAQAKKTGHADLGAYREIADTAGETDFIGYTDTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGVSSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG   +  G  ++I D QK   G++VH  +V+ G +        +ID + R+ ++
Sbjct: 511 GQIGDTGRIKVDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAHASIDGRRRKAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVHAEVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQK 818
            + +  +    K + +  ++  +       DV  ++     +       +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGVALVTGQVPDGTTPDDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           +IQ G   ++ L  +    K   +I   E   +R   A DL R +AK LGGGG GG+P +
Sbjct: 806 RIQGGRAAVVALFTV-NNGKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDV 863

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ GG N     +A+  V   + +
Sbjct: 864 AQGGGQNPAAVGEAVDAVERLVAE 887


>gi|52141119|ref|YP_085711.1| alanyl-tRNA synthetase [Bacillus cereus E33L]
 gi|196039230|ref|ZP_03106536.1| alanine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|206976027|ref|ZP_03236937.1| alanyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217961878|ref|YP_002340448.1| alanyl-tRNA synthetase [Bacillus cereus AH187]
 gi|222097831|ref|YP_002531888.1| alanyl-tRNA synthetase [Bacillus cereus Q1]
 gi|228917022|ref|ZP_04080582.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228935709|ref|ZP_04098522.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229141125|ref|ZP_04269667.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|229198515|ref|ZP_04325219.1| Alanyl-tRNA synthetase [Bacillus cereus m1293]
 gi|59798503|sp|Q634F6|SYA_BACCZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51974588|gb|AAU16138.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|196029857|gb|EDX68458.1| alanine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|206745779|gb|EDZ57176.1| alanyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217067465|gb|ACJ81715.1| alanyl-tRNA synthetase [Bacillus cereus AH187]
 gi|221241889|gb|ACM14599.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus Q1]
 gi|228585018|gb|EEK43132.1| Alanyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228642403|gb|EEK98692.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|228823947|gb|EEM69766.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842629|gb|EEM87717.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 880

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|228929433|ref|ZP_04092454.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228830221|gb|EEM75837.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 880

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ +++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNRLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|228987640|ref|ZP_04147754.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228772100|gb|EEM20552.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 880

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+  +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVTVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQTDELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|210615765|ref|ZP_03290746.1| hypothetical protein CLONEX_02964 [Clostridium nexile DSM 1787]
 gi|210150101|gb|EEA81110.1| hypothetical protein CLONEX_02964 [Clostridium nexile DSM 1787]
          Length = 885

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/907 (38%), Positives = 515/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL FF+   H ++ S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 12  VNELRKMFLNFFESKEHLVMKSFSLVPNNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 71

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 72  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIHWSWEFLTEVVGLDPD 127

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G++ ++I +    DNFW    +GPCGPCSEI++D+GE  
Sbjct: 128 RLYPSVYVDDQEAFDIWNKEMGIAPERIFKFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 186

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 187 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYEELEQKNIDTGMGLERLASVVQDVD 246

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     +   ++Y  + +  V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 247 SIFDVDTIKALRDKVCEFASVEYKADADKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 306

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I + L  E+++F 
Sbjct: 307 VLRRLIRRAARHGRLLGIDGKFLAKLSATVIEGSKDGYPELEEKKEFIFKVLTQEEDKFN 366

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + +    +L+G  AFKLYDT+G PLD+ ++IL   G   ID   
Sbjct: 367 KTIDQGLSILASMQDEMKEAGKTVLSGADAFKLYDTYGFPLDLTKEILEEAGYT-IDEEG 425

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  ++EEQR +AR           +   +   E    ++F+GYD L              
Sbjct: 426 FKASMEEQRVKARNAREVTNYMGADATVYDEIEASVTSEFVGYDRLTH------------ 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S +  +  + EIVE    GQ   +  D+TPFYA  GGQ GDTG    +
Sbjct: 474 -----------TSKISVLTTESEIVEAITEGQNGTIFVDETPFYATMGGQEGDTGIICTE 522

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +++  K   G   H   V +G+ +   S+ L +  + R     NHSATHLL  AL
Sbjct: 523 DAEFTVSNTIKLLGGKIGHVGNVTKGMFKVGDSVTLEVAEKERANTCKNHSATHLLQKAL 582

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TPD LRFD  H   +T  EL+ +E+ VN  IA+N+PVVT +MN E
Sbjct: 583 KTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTPEELEKVENIVNTEIAKNVPVVTEVMNIE 642

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A+GA AL G KY + VRVVS+     G  S  LCGGTHVS+TG I    IVSE+ + 
Sbjct: 643 QAKATGAMALFGEKYEEDVRVVSM-----GDFSKELCGGTHVSNTGNITTFKIVSEAGVA 697

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG     +    +++L   A   K +  N+  ++E +  E + LQ      
Sbjct: 698 AGVRRIEALTGDGVFCYYKEVEKELAEAAKAAKSTPANLKEKIEHMQAEMKALQSEIESL 757

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +   + L        ++  V  ++  + +VD   L+ + D L++K+  G++++   + 
Sbjct: 758 KSKAAKDALGDVMNQVKEVNGVRLLATAVEDVDMNGLRDLGDQLKEKLGEGVVVIASSAS 817

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K +++ + T++ +++  +A +L +  A ++GGGG GGRP+MAQ+GG N      AIA 
Sbjct: 818 -GKVNLIAMATDEAMEKGAHAGNLIKGIAALVGGGG-GGRPNMAQAGGKNPAGIPDAIAK 875

Query: 892 VASFLKK 898
            A  L +
Sbjct: 876 AAEVLAE 882


>gi|47566576|ref|ZP_00237398.1| alanyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47556606|gb|EAL14938.1| alanyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 880

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  ++K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDEKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|228923140|ref|ZP_04086431.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836519|gb|EEM81869.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 880

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+  +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVTVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLIGQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|289523056|ref|ZP_06439910.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503599|gb|EFD24763.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 880

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/908 (37%), Positives = 526/908 (57%), Gaps = 48/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL +F++  H+  PS SLIP +DPTL+FT +GMVPFK  F G +KP     T
Sbjct: 5   SGKELRELFLSYFEQKEHKRFPSFSLIP-DDPTLLFTIAGMVPFKPYFLGLKKPEVLRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT+RHHTFFEMLGNFSFG YFKERAI  AW+ LTK   LD 
Sbjct: 64  TSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKERAIPWAWEFLTKVIGLDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+Y T+Y +D+EAF++W K+ GL   KI+R+   DNFW+    GPCGPCSE+ +DQG  
Sbjct: 120 ERMYATIYLDDDEAFEIWNKVVGLPESKIVRMGEKDNFWAAGPIGPCGPCSELIYDQGPA 179

Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P      + +RY+E+WNLVFMQ+ +  +     LPK +IDTGMGLER+A+++Q  
Sbjct: 180 FSCGKPDCFVGCDCDRYLEVWNLVFMQYNRDEEGNLTPLPKKNIDTGMGLERLASIVQGA 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            ++++ DLF  LI+   +++G++Y  +       RVI DHLR+ +F+IADG+LP+NEGRG
Sbjct: 240 RSDFETDLFLPLIEKVSRLSGVEYAADKRFDTAMRVIADHLRALAFMIADGVLPSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  Y R+LG   P ++ L+P L   M   Y EL++ +  IE  +  E++RF
Sbjct: 300 YVLRRLLRRASRYGRVLGLDRPFLIELMPELLEIMADHYKELVEYRSTIESVINLEEKRF 359

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TLD+G  LL+  +S + +    +L+G+ AF LYDT+G PL++ ++I   +G   +D  
Sbjct: 360 SRTLDQGSALLEEEISRVIRSGSSVLSGETAFTLYDTYGFPLELTEEICQEQG-IEVDRE 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + +E QR  AR  S  L S   +++  +L  K+G T+F+GY+               
Sbjct: 419 EFERCMERQREMARTASKQLASMAKKEVHSTLLAKFGPTKFVGYE--------------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                   ++   S V AI++    VEEA  G++VE++  +TPFYAE GGQ+GD G    
Sbjct: 464 --------SDEAESKVLAILKDSREVEEAHEGEEVEILLAETPFYAEKGGQVGDKGWIET 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              +L++ D     + +  H   V+ G +  +      +D   R  +  +H++TH++H A
Sbjct: 516 STGKLEVLDTYYYHDVLIAHRVRVKSGYVSADDEAKAKVDLSRRNAIRRHHTSTHIIHEA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L+ +LG H+ Q GS ++P+ LRFD TH   I+  ++  IE   N++I  N+ +     + 
Sbjct: 576 LTRVLGPHIRQAGSYVSPNYLRFDFTHFDAISRDDIVKIEQIANEVIQANIKLNIFETSM 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A   GA A    KY DRVRV+ +       + + LCGG HV++TG+I L  IV E SI
Sbjct: 636 EEAKKIGAKAFFDEKYGDRVRVIQIPG-----YCAELCGGLHVNATGDIGLTKIVKEESI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRI A+ G  A SH     + ++ L     V  G++  +  ++++E + L+    +
Sbjct: 691 GSGLRRITALAGMAAVSHYQELFDLVEDLTLISGVEAGSLKEKFTDVFQEIKNLKTELQR 750

Query: 777 RKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
             L+L +            +     ++    ++D+  L+ V D L+K ++  +++L   S
Sbjct: 751 SNLKLALSQCDKILSQRQIVNGFTLLTGKFEDLDADILRQVGDHLKKGLKKVLLVLGS-S 809

Query: 832 KEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            E K  ++ +  ED + D  +A       AK++  GGGGGRP++AQ+GG    K + A+ 
Sbjct: 810 FEGKVVLVAMADEDAVRDGIHAGKFINRVAKIV-DGGGGGRPNVAQAGGKKVEKLEDALN 868

Query: 891 GVASFLKK 898
            V   L +
Sbjct: 869 AVPRILTE 876


>gi|229098860|ref|ZP_04229796.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|229117885|ref|ZP_04247247.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228665542|gb|EEL21022.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228684533|gb|EEL38475.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 880

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHKGFEAEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S + A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNIVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L    ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKGAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     + E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 NVEISQKSIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++LV +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLVSV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|300119209|ref|ZP_07056906.1| alanyl-tRNA synthetase [Bacillus cereus SJ1]
 gi|298723429|gb|EFI64174.1| alanyl-tRNA synthetase [Bacillus cereus SJ1]
          Length = 880

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHLGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYIK 876


>gi|295695750|ref|YP_003588988.1| alanyl-tRNA synthetase [Bacillus tusciae DSM 2912]
 gi|295411352|gb|ADG05844.1| alanyl-tRNA synthetase [Bacillus tusciae DSM 2912]
          Length = 878

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/907 (38%), Positives = 520/907 (57%), Gaps = 52/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FLEFF    H++ PS+SL+P +DP+L++ N+GM P K  F G++ P    +
Sbjct: 1   MKGAEIRKKFLEFFASKDHDVYPSASLVPVDDPSLLWINAGMAPLKPFFDGRKVPPNPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+R     ND++NVG+T RH TFFEMLGNFS G YFK+ AI  AW+ LT+   LD
Sbjct: 61  ASSQKCIRT----NDIENVGKTARHQTFFEMLGNFSIGDYFKKEAIDWAWEFLTEHMGLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL +T++ ED+EA++LW +  G+ A +I R+   DNFW + E GP GPCSEIF+D+GE
Sbjct: 117 PERLSVTIHPEDDEAYELWHRRIGVPAHRIFRM--EDNFWEIGE-GPSGPCSEIFYDRGE 173

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   E +R++EIWNLVF QF          LPK +IDTGMGLERMA+V+Q+
Sbjct: 174 NRGCGRPECNVGCECDRFLEIWNLVFTQFNHNPDGTYTPLPKKNIDTGMGLERMASVMQD 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +N+D DLF+ +I+A+ +  G++Y  E    V  +VI DH+R++ F + DG+LP NEGR
Sbjct: 234 VDSNFDTDLFRPIIEAAAEAAGVQYGQEKQWDVALKVIADHIRTAVFAVGDGVLPGNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
            Y++RR++RRA+ Y R LG+  P +  L+P +   MG AYPE+++    I   +++E+ER
Sbjct: 294 SYIIRRLLRRAVRYGRNLGFDRPFLYRLVPVVGEVMGEAYPEIVEKGDFIVRAVKAEEER 353

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL  G  +L+  +  L       L G+ AF+LYDT G P+D+ ++I   +G   +D 
Sbjct: 354 FLETLAEGEQVLEDYIEKLRSAGRTTLAGEDAFRLYDTFGFPIDLTKEIASEQG-IDVDE 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F QALE QR RARA    + S  +++    L +    ++F+GY++L            
Sbjct: 413 EGFAQALEAQRERARAARQDVESMQSKRGV--LVDLEAPSRFVGYEVLE----------- 459

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V+ +V    +VE    G +  +V ++TPFYAE+GGQ+ D G   
Sbjct: 460 ------------TQSRVEVLVVDDRVVERVSEGDQCLIVLNETPFYAESGGQVADRGTIE 507

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               RL++ DVQK   G  VH   V RG +     +   +D + R  +  NH+ATHLLH 
Sbjct: 508 TATARLEVEDVQKAPRGQHVHRCRVVRGTVTAGEVVRARVDRRYREDIIKNHTATHLLHK 567

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS +    LRFD +H  P+   EL+++E  VN+ I +N PV  R M 
Sbjct: 568 ALREVLGEHVAQAGSLVADSRLRFDFSHYGPLAPEELEAVERVVNEEIWRNEPVDIREMP 627

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY +RVRVV       G  S  LCGG HV  T EI +  IVSE+ 
Sbjct: 628 LDEAKAMGAMALFGEKYGERVRVVK-----AGDFSIELCGGCHVRRTSEIGVFKIVSETG 682

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRIEA+TG+ A + L  + + L   AS L+V+  +V  ++E++  + ++ +    
Sbjct: 683 IGSGVRRIEAVTGRHAYAFLDSRLKGLDRAASLLRVAPADVPDKLEQVLGDMKETERELE 742

Query: 776 K-----RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
                  + Q          I  V  ++ ++      +++ ++D L + I SG+++L G 
Sbjct: 743 SWRDRWIRGQALRLADRVTDIQGVPVVAEVVEGATPDQMRRMVDVLWETIHSGVVVL-GS 801

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +E K   +  V+ D +    +A  L +  A   GGGG GG+P +AQ+GG +  K  +A+
Sbjct: 802 KQEDKVMFVAAVSPDWVAKGLHAGQLVKEVAAAAGGGG-GGKPDLAQAGGRHPEKLAEAL 860

Query: 890 AGVASFL 896
           + V  ++
Sbjct: 861 SRVPGWV 867


>gi|288555383|ref|YP_003427318.1| alanyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288546543|gb|ADC50426.1| alanyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 879

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/912 (38%), Positives = 523/912 (57%), Gaps = 57/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+FF++ GH++ PS+SL+P  DP+L++ NSG+   K  F G+  P    +T
Sbjct: 5   TSAQVRQMYLDFFKEKGHDIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +L +TV+ ED EA+  W K  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DPEKLSVTVHPEDNEAYDYWAKNIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+E+WNLVF QF          LPK +IDTGMGLERM +V
Sbjct: 178 PSYGDDANDPELYPGGENERYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +IQA+EQ+T +KY  +    V  +VI DH+R+ +F + DG LP+N
Sbjct: 238 IQDTKTNFETDLFMPIIQATEQLTSVKYGADTETDVAFKVIADHVRTVTFAVGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+L+G   P M  L+P +   M   YPE+ +    I++ +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKLIGIDRPFMYELVPVVGEIMVDFYPEVKEKTEFIQKVMKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +LD +L+      +E+++G   F+LYDT+G P+D+ ++ +  +GL  
Sbjct: 358 EERFHETLNEGLGILDKILAEAKGKNEEVISGSDVFRLYDTYGFPVDLTEEYVEEKGLT- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F   +E+QRSRARA     GS   +     L E    + F+GY+ L         
Sbjct: 417 IDRDGFEVEMEQQRSRARAARQESGSMQVQDEL--LGEINAESTFVGYNQL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V  ++   E +    +G+  +V+   TPFYAE+GGQ+ DTG
Sbjct: 466 --------------SAEGTVSVLIAGKERMSSVPAGETAQVILSTTPFYAESGGQVADTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G+G+  ++T+V K   G  +H  +VE G L+  +++  T++  +R  +  NH+ATHL
Sbjct: 512 TIVGEGVIARVTEVTKAPNGQHLHTVVVEEGELKEGVTVTSTVEETSRIGIVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS ++ D LRFD +H   +T  EL  IE+ VN+ +   + V   
Sbjct: 572 LHQALKDVLGVHVNQAGSLVSEDRLRFDFSHFGQVTKEELTKIEEIVNEKVWNAISVDIS 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  +VS
Sbjct: 632 EKKLAEAKEMGAMALFGEKYGDTVRVVQV-----GDYSLELCGGCHVRNTAEIGLFKVVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQ 771
           ES I AG+RRIEA+TGQ A   +  Q   L + +  +K     +V  R+E + ++ R LQ
Sbjct: 687 ESGIGAGVRRIEAVTGQGAYEFMNDQLRLLTTASELVKAKNVKDVPARIEAMQQQIRDLQ 746

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L   +         ++  V  +S  ++  D   L++++D L++ + SG+I+
Sbjct: 747 RENESLSSKLGNMEAGNLIDEAVEVNGVKVLSKEVNASDMDGLRAIVDKLKQDLDSGVIV 806

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  +S E K +++  VT+DL+    +A  L +  A   GGGG GGRP MAQ+GG    + 
Sbjct: 807 LGAVSGE-KVNLVAGVTKDLISQGHHAGKLVKEVASRCGGGG-GGRPDMAQAGGKKPEQL 864

Query: 886 DQAIAGVASFLK 897
            +A+A V  F+K
Sbjct: 865 AEALAYVPEFVK 876


>gi|15893250|ref|NP_360964.1| alanyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|20532256|sp|Q92G00|SYA_RICCN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15620469|gb|AAL03865.1| alanyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
          Length = 878

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/901 (45%), Positives = 562/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R    +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRD-IAVDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q++RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKARARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I +H  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIIHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDAI
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAI 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+   + +  +D  LKS+ S  K ++  ++ +V  I E  ++++    K    
Sbjct: 696 RRIEAVCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQSAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|327398418|ref|YP_004339287.1| alanyl-tRNA synthetase [Hippea maritima DSM 10411]
 gi|327181047|gb|AEA33228.1| alanyl-tRNA synthetase [Hippea maritima DSM 10411]
          Length = 860

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/900 (39%), Positives = 528/900 (58%), Gaps = 45/900 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FLE+F++NGH ++ S+ L+P NDPTL+F N+GMV FKN+F G+EK  Y   
Sbjct: 1   MKSSDLRKAFLEYFKENGHTIVKSAPLVPKNDPTLLFVNAGMVQFKNVFLGKEKRDYARA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   WD +T+   +D
Sbjct: 61  TSCQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFGWDFVTRVLGID 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+IT++ +D+EAF++W K  G+ + +I+R+  +DNFW+M +TGPCGPCSEI  DQG 
Sbjct: 121 KDKLWITIFKDDDEAFEIWNKQEGVPSSRIVRMDEHDNFWAMGDTGPCGPCSEIHIDQGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P    + + +RY+E+WNLVFMQ+ +        LPK SIDTGMGLER++ +LQ 
Sbjct: 181 DVGCGKPNCSVACDCDRYLELWNLVFMQYNRDEDGNMTPLPKPSIDTGMGLERVSAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGR 297
             +N+DID+F+H+I    +   + Y  ++  +   RVI DHLR+  FLIADG+ P  EGR
Sbjct: 241 VHSNFDIDIFRHIIGNISEFFRIDYGKDSNRDVGVRVIADHLRAMDFLIADGVFPDKEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRAM + + LG  EP +   +  +   MG  YPEL+Q K ++   +++E+E+
Sbjct: 301 GYVLRRIMRRAMRFGKKLGANEPFLYRFIDTVNDVMGDVYPELLQNKEMVVNVVKAEEEQ 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TLD GL +L+ +        +++ + AFKLYDT+G P+D+  DI    G   +D+  
Sbjct: 361 FFETLDSGLRILNDIFDKAT-KRVVDAESAFKLYDTYGFPIDLTVDIAKENGFE-VDVKD 418

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN+ LE+QR  +R    G G       +  + ++ G T+F+GYD                
Sbjct: 419 FNELLEKQREASRKSWKGSGDEFVWDAFGDIYKQKGKTEFVGYDEFE------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + +  IV + + ++E         +FD+TPFYAE+GGQ+ DTG  +  
Sbjct: 466 ----------TKARLLGIVGKDKKIKEQAQRGVYYFIFDKTPFYAESGGQVADTGFILKG 515

Query: 538 GIRLQITDVQKKAE-GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             R  ++DV+K  +  +FVH   V  G         L I+   R+ ++ +H+ATHLL  A
Sbjct: 516 NARAFVSDVKKYFDGNLFVHKVDVLEGEFELNDECDLRINVARRKNIARHHTATHLLDAA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG HV Q GS +  + LRFD TH   +T  +++ IE+ +N  I +N PV T  M+ 
Sbjct: 576 LIKILGKHVRQAGSLVEDNRLRFDFTHFSKLTDEQIEEIEELINSWIVENYPVKTETMSL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DAI SGA AL   KY+D VRVVSV     G  S  LCGGTHV ++GEI L  ++ ES++
Sbjct: 636 DDAINSGAIALFDEKYSDEVRVVSV-----GNISKELCGGTHVKASGEIGLFKVIHESAV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA  G  A  ++   ++ LK  AS L +    +            +       
Sbjct: 691 AKGIRRIEAKVGVEAYEYVKQIEKVLKDAASKLGIPITELPL--------KIEELKKKKT 742

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            K Q   +     K+  ++    +    D  EL+ + D ++ K++S I++L    K+ + 
Sbjct: 743 LKSQPKFDPSKVVKVNGIDVYVDVFENEDVSELRHLGDTVKSKLKSCIVVLF-DKKDDRV 801

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +V+++VT+DL +R  A D+    ++ LGG G GG+   AQ GG + ++ ++ I  + SFL
Sbjct: 802 NVIVMVTKDLANRIKAKDVVGKISRALGGKG-GGKEEFAQGGGRDLDRLEEIIRSINSFL 860


>gi|34581082|ref|ZP_00142562.1| alanyl-tRNA synthetase [Rickettsia sibirica 246]
 gi|28262467|gb|EAA25971.1| alanyl-tRNA synthetase [Rickettsia sibirica 246]
          Length = 878

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/901 (45%), Positives = 562/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHIHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WK+I+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAAAYWKQIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R    +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRD-IAVDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I +H  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIIHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDAI
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAI 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+   + +  +D  LKS+ S  K ++  ++ +V  I E  ++++    K    
Sbjct: 696 RRIEAVCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|123967582|ref|YP_001008440.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|205830182|sp|A2BNH2|SYA_PROMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123197692|gb|ABM69333.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 886

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/908 (34%), Positives = 497/908 (54%), Gaps = 52/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+ +  H+++PS+SLIP +DPT+M T +GM+PFK +F G ++   +  T
Sbjct: 11  TGDEIRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+T  + L  
Sbjct: 70  SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSV 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V+ EDEE+ K+W    G+  D+I+++   DNFWS  +TGPCGPCSE+++D    
Sbjct: 126 ENIIVSVFHEDEESAKIWSDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ+ +    +   L   +IDTGMGLERMA +LQ+K N
Sbjct: 186 -KGLQNIDLEDGDRFIEFYNLVFMQYNRDPNGKLTDLKFKNIDTGMGLERMAQILQKKQN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ   ++  + Y  ++  N    ++I DH R+   LI+DG+  +N GRGY
Sbjct: 245 NYETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVSASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG T   + H+       M + YP+L     LI   ++ E+ RF 
Sbjct: 305 ILRRLIRRMVRHGRLLGITNEFLPHIASVGINLMQNNYPDLKNNNDLILNEIKIEEIRFR 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LLD ++S     ++++G  AF+LYDT+G PL++  +I        +D+  F 
Sbjct: 365 ETLERGEKLLDELISS--GQKLISGFKAFELYDTYGFPLELTVEIAEEHS-ISVDVKGFE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +  Q+ RA+A S  +       +   + + +  T F GY  L                
Sbjct: 422 EEMNVQKERAKAASSNIDLTLEGSLEREI-DVFNKTVFNGYKSLLS-------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + +K I     +V+EA  GQKV +V DQT FY E+GGQ+GD G    + +
Sbjct: 467 ---------EAEIKGIFLDSTLVKEASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSNDV 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D   + + +F+H+  +++G L     +   +   NR + + NH+ATHLL  AL +
Sbjct: 518 EVLV-DNVMRKKNVFLHYGTIKKGKLTIGQKVKTNVSSSNRAKAAANHTATHLLQSALKS 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   V Q GS +  + LRFD   S PI+  ++  IE  VN  I +N  +  + M++ +A
Sbjct: 577 VINESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHSLEIKNMSKSEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A+ G KY+D VRVV+V        S  LCGGTHV +T E+    I+SE  I AG
Sbjct: 637 LEKGAVAMFGEKYDDEVRVVNVPG-----VSMELCGGTHVKTTSELGSFKIISEEGISAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E         K K 
Sbjct: 692 VRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQAELINKNKEIQKMKD 751

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG---IS 831
           ++          S   +   + + + I  +D   L+S    L   + +  I+++G     
Sbjct: 752 EIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVILGGIPNP 811

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + +K   ++ + +D +    +A  L    A++  GG GGG+P+ AQ+G  + +K   A+ 
Sbjct: 812 ENRKLLFVVSLGDDAVKIGLHAGKLINEIARICSGG-GGGKPNFAQAGAKDIDKLSDALD 870

Query: 891 GVASFLKK 898
              ++L+K
Sbjct: 871 YAKNYLQK 878


>gi|51474024|ref|YP_067781.1| alanyl-tRNA synthetase [Rickettsia typhi str. Wilmington]
 gi|59798518|sp|Q68VQ7|SYA_RICTY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51460336|gb|AAU04299.1| Alanine translase [Rickettsia typhi str. Wilmington]
          Length = 877

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/901 (45%), Positives = 557/901 (61%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPDNDPSLMFVNSGMVQFKNVFTGQEKRSYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL++VG T RHHTFFEMLGNFSFG YFKE+AI   WDLLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLEHVGYTARHHTFFEMLGNFSFGDYFKEQAIYYTWDLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T+Y  D+ A   W+KISGL  D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYVTIYHTDDTAASYWEKISGLRDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEE 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+ +R+IEIWN+VFMQ+EQ NK+ R  LPK SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDCDRFIEIWNMVFMQYEQINKETRIELPKKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K +G    ++RVI DHLR+SSFLIADGI+P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVDGEAKFSYRVIADHLRASSFLIADGIIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRAM +A +LG  EPLM  LLP L   MG+ YPEL  A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRAMRHAHMLGAKEPLMYKLLPKLVDLMGNIYPELKIAEGFISSILEQEEIRFKTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R    +D   F + 
Sbjct: 365 LERGLKLLTEETKTLTKGNKLSGEVAFKLYDTYGFPLDLTEDILKNRD-IAVDHKGFEEL 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE+YG+T+F+GY L                   
Sbjct: 424 MLIQKERARTSWLGSGESKTDQLWFDIKEQYGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   + +       +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAKCKIIALIKNNNLADTIQEVDTQFLLIANQTPFYGESGGQMGDIGMIFSQDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +    ID + R+ L I+HSATH+LH  L  I
Sbjct: 521 VEVIDTLKYLRSIIVHKCILKKGKINIGENANFNIDIKYRKNLRIHHSATHILHAVLHKI 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +T   LRFD+ HSK IT+ E+  IED VN+II  N  V T +M  EDAI
Sbjct: 581 LGKQVIQKGSLVTSTYLRFDINHSKAITNEEITLIEDKVNEIIRNNHEVNTTVMFTEDAI 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I+SESSI AG+
Sbjct: 641 KQGAIALFGEKYDSEVRVVKI-----GETSLELCCGTHVKRTGDIGAFKIISESSIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  +D  +K + S +K ++  ++ +V  I E  ++L+    K    
Sbjct: 696 RRIEAVCGEFVIKLIREKDNLIKLIESSVKTNKNELITKVTNILERNKELEKELEKAHLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +        +IA +  +   +  +++K L+   + L +K+++ I++ +      K
Sbjct: 756 GLDLSIEQIKKQAEQIAGIKLLYKKVGNINNKILRQAAENLTQKLENLIVVYIAHGV-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D+FNA  +A+  +  LGG GGGG+  +AQSGG +          + S 
Sbjct: 815 LSITVAVSKAITDKFNAGIIAKELSLFLGGSGGGGKASIAQSGGNDIVNLTNINKKLLSL 874

Query: 896 L 896
           +
Sbjct: 875 I 875


>gi|157829157|ref|YP_001495399.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933886|ref|YP_001650675.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
 gi|205830193|sp|B0BVK9|SYA_RICRO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830194|sp|A8GU16|SYA_RICRS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157801638|gb|ABV76891.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908973|gb|ABY73269.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
          Length = 877

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/901 (45%), Positives = 558/901 (61%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKAEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R    +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNKLSGEVAFKLYDTYGFPLDLTEDILKNRD-IAVDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+  AR   LG G   T ++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKELARKSWLGSGESKTNQLWFDIKEQHGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTISAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDAI
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAI 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+   + +   D  LKS+ S  K ++  ++ +V  I E  ++++    K    
Sbjct: 696 RRIEAVCGEFVITLMRENDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|226323189|ref|ZP_03798707.1| hypothetical protein COPCOM_00961 [Coprococcus comes ATCC 27758]
 gi|225208379|gb|EEG90733.1| hypothetical protein COPCOM_00961 [Coprococcus comes ATCC 27758]
          Length = 855

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/888 (38%), Positives = 502/888 (56%), Gaps = 48/888 (5%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT QKC+R G    D++NVG+
Sbjct: 1   MKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTTCQKCIRTG----DIENVGK 56

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK 142
           T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  RLY +VY++D+EA+K+W +
Sbjct: 57  TARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPDRLYPSVYEDDDEAWKIWNE 116

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGERYIEI 200
             G++ ++I R    DNFW    +GPCGPCSEI++D+GE    G PG     E +RY+EI
Sbjct: 117 EIGIAPERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKYGCGKPGCTVGCECDRYMEI 175

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           WN VF QF+         L + +IDTGMGLER+A ++Q+  + +DID  K L     ++ 
Sbjct: 176 WNNVFSQFDNDGHGNYSELKQKNIDTGMGLERLACIVQDVDSMFDIDTLKALRDQVCEIA 235

Query: 261 GMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
           G+ Y  N    V+ RVI DH+RS SF+I+DGI+P+NEGRGYVLRR++RRA  + RLL   
Sbjct: 236 GVSYGDNESTDVSLRVITDHVRSVSFMISDGIMPSNEGRGYVLRRLLRRACRHGRLLNIA 295

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
              +  L   +       YPEL + K  I   +R E+E+F KT+D+GLV+L+ +   + +
Sbjct: 296 PGFLTDLAATVIEGSKDGYPELEEKKDFIMNVIRKEEEQFEKTIDQGLVILNEMKEKMAE 355

Query: 379 D--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
           +  + L+G+ AFKLYDT+G P+D+ ++IL       ID   F  A+E QR  AR      
Sbjct: 356 EGTKTLSGEDAFKLYDTYGFPIDLTKEILE-EEGIDIDEEGFKAAMEVQRQTARKARKAT 414

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
                +   +   +    ++F+GY+ L                          S +  + 
Sbjct: 415 NYMGADATVYESIDPSVTSKFVGYEHLEY-----------------------ESKITVLT 451

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
            + EIV+    G++  +  D+TPFYA +GGQ  D G          + DV+K   G   H
Sbjct: 452 TEDEIVDALSDGERGTIFVDETPFYATSGGQEADHGVIKCGDGEFVVEDVKKMLGGKIGH 511

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
              + +G+++    + LT+D Q R   + NHSATHLL  AL T+LG+HV Q+GS +    
Sbjct: 512 IGYMAKGMMKVGDQVTLTVDSQRRVLCARNHSATHLLQKALRTVLGTHVEQSGSYVDDKR 571

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           LRFD +H   +T  EL+ +ED VN+ I+++LPVV + M  E+A  +GA AL G KY D V
Sbjct: 572 LRFDFSHFSAMTPEELQKVEDMVNESISRSLPVVIKNMPIEEARKTGAQALFGEKYGDIV 631

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVV++     G +S   CGGTHV++T EI    I+SES + AG+RRIEA+T +    +  
Sbjct: 632 RVVNM-----GDYSIEFCGGTHVANTSEIGAFKILSESGVAAGVRRIEALTSKGLMDYYG 686

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKI 791
             ++ L   A  LK +   V  ++  +  E ++L       K +L  +          ++
Sbjct: 687 ELEQLLHEAAKLLKATPDTVSEKIAHLQAENKELHSEVESLKSKLAKDAMGDVMDQVEEV 746

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-F 850
           A V  ++  + ++D   L+ + D L++KI  G++++   S   K S++   T++ + +  
Sbjct: 747 AGVKVIAVSVEDMDMNGLRDLGDQLKEKIGEGVVVIAS-SANGKVSLMATATDEAMKKGA 805

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +A +L +  A  +GGGG GGRP+MAQ+GG N      A+A V   L +
Sbjct: 806 HAGNLIKAIASCVGGGG-GGRPNMAQAGGKNPAGIPDALAKVKEVLAE 852


>gi|254415207|ref|ZP_05028969.1| alanyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196178013|gb|EDX73015.1| alanyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 877

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/906 (37%), Positives = 496/906 (54%), Gaps = 50/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+F+ K  H++LPS+SL+P +DPT++ T +GM+PFK IF GQ +  +   T
Sbjct: 9   SGNQIRQKFLDFYDKRQHQVLPSASLVP-DDPTVLLTIAGMLPFKPIFLGQRQSDFSRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  AW+L T  F+L  
Sbjct: 68  TSQKCLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTNVFELPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ ED+EAF +W+   G+ A +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 124 ERLIVSVFREDDEAFAIWRDKIGIPAHRIQRMGEEDNFWASGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +        L   +IDTG+GLERMA +LQ+  N
Sbjct: 184 -KGDKDIDLEDDTRFIEYYNLVFMQYNRDADGNLTPLQNKNIDTGLGLERMAQILQQVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++  + Y  ++     + +VI DH+R+   LIADGI  +N GRGY
Sbjct: 243 NYETDLIFPIIKTAAEIAELDYAKSDEKTKVSLKVIGDHIRAVVHLIADGITASNIGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G        +           YP + +    I+  L+ E+ +F 
Sbjct: 303 ILRRLIRRVVRHGRLIGIQGEFTTQVADTAIALAEDTYPNVRERNDAIQAELQREESQFR 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RG  LL  +L+   +   ++G  AF LYDTHG PL++ Q+I    GL  +DI  + 
Sbjct: 363 KTLARGEKLLADILAQKPEQ--ISGRDAFTLYDTHGFPLELTQEIAEEHGLT-VDIAGYE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQ+  ++A    +     +     +     AT+F+GY                   
Sbjct: 420 AAMKEQQENSQAAHETVDL-LAQGSLDEVTSGVAATEFLGYT------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A+V +GE VE A +G +V+VV DQTPFYAE+GGQ+GD G   GD  
Sbjct: 461 -----VPATTAQVMALVAEGESVESAQTGTEVQVVLDQTPFYAESGGQIGDRGYLSGDN- 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +   D  KK    FVH   VERG L    ++   ID   RR+   NH+ATHLL  AL  
Sbjct: 515 LVVRIDDVKKESDFFVHFGRVERGTLNLGDTVTAQIDRACRRRAQANHTATHLLQAALKK 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD   S+ +TS EL  IED +N  IA+       IM   DA
Sbjct: 575 IVDPSISQAGSLVAFDRLRFDFNCSRSLTSEELTQIEDQINTWIAEAHGADVAIMPLTDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY D VRV+          S  LCGGTHV++T EI +  IV+E+ + +G
Sbjct: 635 KAKGAIAMFGEKYADEVRVIDFPG-----VSMELCGGTHVNNTAEIGVFKIVAETGVASG 689

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G     +L  +D+ +K L+   KV    +  R+  +  E +  Q      K 
Sbjct: 690 IRRIEAVAGPAVLDYLNLRDKVVKELSDRFKVKPEEIPDRITNLQNELKASQKELEAVKQ 749

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +            + +   +   + +++   LK+  + LQ+K+    ++L  +  E 
Sbjct: 750 ELALAKSDQVLSQAESVGEFKVLVANLGDIEPDALKTAAERLQQKLGDSAVVLGSVPTEG 809

Query: 835 KASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   +  +    +  A       AK+ GGGG GGRP++AQ+GG + +K  +A+   
Sbjct: 810 KVSLVAAFSAKIYKDKQLQAGKFIGGIAKLCGGGG-GGRPNLAQAGGRDASKLPEALDAA 868

Query: 893 ASFLKK 898
              L +
Sbjct: 869 KRQLIE 874


>gi|291522221|emb|CBK80514.1| alanyl-tRNA synthetase [Coprococcus catus GD/7]
          Length = 880

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/908 (38%), Positives = 510/908 (56%), Gaps = 48/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +++ +R  FLEFF+  GH  + S SLIP ND +L+  NSGM P K  FTG E P  + VT
Sbjct: 6   SLNELRKMFLEFFESKGHLAMKSFSLIPHNDNSLLLINSGMAPLKPYFTGAEIPPRRRVT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R G    DL+NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD 
Sbjct: 66  TCQKCIRTG----DLENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTQVVGLDP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY ++Y +D+EAF +W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE 
Sbjct: 122 DRLYPSIYQDDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEK 180

Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G PG     + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+ 
Sbjct: 181 YGCGKPGCTVGCDCDRYMEVWNNVFSQFNNDGHNHYTDLIQKNIDTGMGLERLAVVVQDV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +D+D  + L      + G+KY  +    V+ R+I DH+RS++F+I+DGI+P+NEGRG
Sbjct: 241 DSIFDVDTIQALRNKVCDLAGVKYLEKHETDVSIRIITDHIRSATFMISDGIMPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG     +  L   +       YPEL + K  I   L  E+++F
Sbjct: 301 YVLRRLIRRAARHGRLLGIEGKFLAKLSATVIETSKDGYPELEEKKEFIFNVLTQEEDKF 360

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            KT+D+GL +L+ +   L     ++L+G  AFKLYDT+G P+D+ ++IL  +G   ID  
Sbjct: 361 NKTIDQGLSILNEMEEKLSAEDKKVLDGADAFKLYDTYGFPMDLTKEILEEKGY-DIDEE 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F   ++EQR +AR           +   +   +    + F+GY+               
Sbjct: 420 GFTVCMQEQRQKARDARKVSNYMGKDATVYDEIDPSVTSVFVGYEKTE------------ 467

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S +  +  + E+ +    GQ   +   +TPFYA +GGQ+ DTG   G
Sbjct: 468 -----------CESPITVLTTETELTDALTDGQTGTIFTQETPFYATSGGQMADTGVITG 516

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                ++ DV K   G   H  +V  G+ +    + L I+ + R   + NHSATHLL  A
Sbjct: 517 PEGTFEVKDVVKLLGGKIGHIGVVTSGMFKKGDVVKLAINKEKRSDTAKNHSATHLLQKA 576

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LGSHV Q GS    D LRFD TH   +T  EL  +ED VN+ IA+ LPV+T++MN 
Sbjct: 577 LRIVLGSHVEQAGSFNNQDKLRFDFTHFSALTQEELDRVEDIVNEEIAKGLPVLTKVMNI 636

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           EDA  +GA AL G KY+D VRVVS+     G  S  LCGGTH  +T  I    I+SE+ +
Sbjct: 637 EDAKKTGAMALFGEKYSDDVRVVSM-----GDFSKELCGGTHTDNTASIAAFKIISETGV 691

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG     +    ++KL   A   K     +V R+E + EE + L   + +
Sbjct: 692 AAGVRRIEALTGNGVFKYYKEVEKKLHEAAKTAKCDPAQLVKRIEGLHEEIKTLTAENNQ 751

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K ++  + +         +  V+F+   + ++D +EL ++ D L+ K+  G+I+L    
Sbjct: 752 LKNKMAKDAMGDVMNQVKDVNGVSFLPVHVKDIDMQELMNLGDQLKAKLGDGVILLAS-E 810

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K S+L + T+  + +  +A +L +  AK++GGGG GGRP+MAQ+GG N    +QA+ 
Sbjct: 811 NGGKVSLLAMATDGAMKKGAHAGNLIKAVAKLVGGGG-GGRPNMAQAGGKNPAGINQALE 869

Query: 891 GVASFLKK 898
             A  L K
Sbjct: 870 AGAEELAK 877


>gi|167746982|ref|ZP_02419109.1| hypothetical protein ANACAC_01694 [Anaerostipes caccae DSM 14662]
 gi|167653942|gb|EDR98071.1| hypothetical protein ANACAC_01694 [Anaerostipes caccae DSM 14662]
          Length = 868

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/899 (38%), Positives = 514/899 (57%), Gaps = 48/899 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            FL+FF+   H ++ S SL+P ND +L+  N+GM P K  FTGQE P    V T QKC+R
Sbjct: 1   MFLDFFESKDHLVMKSFSLVPQNDKSLLLINAGMAPLKPYFTGQEVPPKTRVATCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+   LD  RLY +V
Sbjct: 61  TG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVVGLDPERLYPSV 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y +D+EAF++W+K  G++ ++I R    DNFW     GPCGPCSEI++D+GE    G P 
Sbjct: 117 YLDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGSPD 175

Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                E +RY+E+WN VF QFE         L   +IDTGMGLER+A V+QE  + +D+D
Sbjct: 176 CTVGCECDRYMEVWNNVFTQFENDGNGNYEELDNKNIDTGMGLERLAVVVQEVDSIFDVD 235

Query: 248 LFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             K +     ++ G+ Y  +  N ++ RVI DH+RS+SF+I+DG++P+NEGRGYVLRR++
Sbjct: 236 TIKAIRDRICELAGVTYGADEKNDISIRVITDHIRSASFMISDGVMPSNEGRGYVLRRLI 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + R+LG  +  +  L   +  E    YPEL + +  I + L +E+E+F +T+D+G
Sbjct: 296 RRAARHGRMLGMKDLFLAGLSKTVIAESKDGYPELKEKEEFIYKVLTTEEEQFNRTIDQG 355

Query: 366 LVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L  +   + ++    L G  AFKLYDT+G PLD+ ++IL  +G   +D   F +A+E
Sbjct: 356 LQILADMEEAMSREGKKELAGKDAFKLYDTYGFPLDLTKEILEEKG-ISVDETGFQRAME 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           +QR +AR           +   +   +    ++F+GYD L                    
Sbjct: 415 QQRKQAREARETTNYMGADATVYEQLDPAMTSEFVGYDTL-------------------- 454

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S + A+    E+ +  V GQ+  ++  +TPFYA +GGQ  D G  + +     +
Sbjct: 455 ---TCESEIIAMTTDQELTDSLVEGQRGTIICSRTPFYATSGGQEADQGVILSENSSFAV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DV K + G F H   V  G L     ++L ++ +NRRQ   NHSATHLL  AL T+LGS
Sbjct: 512 EDVIKLSGGKFGHVGYVNEGNLSVGEKVLLNVNERNRRQTEKNHSATHLLQKALRTVLGS 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS      LRFD TH  P+T  E+K +E  VN+ IA +LPV T++M+ ++A  +G
Sbjct: 572 HVEQAGSSNNAKHLRFDFTHFSPMTPEEIKKVEHIVNEEIAASLPVETKLMSMDEAKNTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRVVS+     G  S  LCGGTHV++TG I    I+SE+ I AG+RRI
Sbjct: 632 AMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVANTGSITAFKILSETGIAAGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EAIT +    +    +E+L   +  +K +   ++ R+E +  E ++L   +   K +L  
Sbjct: 687 EAITDKAVFEYYEKMEEELMEASKVVKSTPAKLMARLEALMTELKELHSENESLKSKLAK 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + L         +  V  ++  +++VD   L+ + D+L++K+  G+I+L   S   K  +
Sbjct: 747 DALGDVMDQVQDVNGVKLLAAKVADVDMNGLRELGDSLKEKLGEGVIVLAS-SLGGKVFL 805

Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + + T+       +A +L +  A  +GGGG GGRP+MAQ+GG      D AIA     L
Sbjct: 806 VAMATDGAQKAGAHAGNLIKGIAGCVGGGG-GGRPNMAQAGGKKPEGIDDAIAKAKEEL 863


>gi|269798241|ref|YP_003312141.1| alanyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094870|gb|ACZ24861.1| alanyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 871

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/909 (36%), Positives = 498/909 (54%), Gaps = 55/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P  + +
Sbjct: 1   MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QK +R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD
Sbjct: 61  TTCQKSMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG 
Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ 
Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQG 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N++ DL   +I+A+ +  G+ Y    N  V+ +VI DH R+ + LI+DG+LP+NEGR
Sbjct: 234 CKTNFETDLIFPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ER
Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGITSIAEKQDFVKRVVQNEEER 353

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID 
Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDH 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A++EQR RAR   +   +         LK++                        
Sbjct: 413 EGFEAAMKEQRERAREARVKEDAKVATPDITFLKDE------------------------ 448

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                 ++     +S V  + +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +
Sbjct: 449 ----ELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIV 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G   ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH 
Sbjct: 505 GPMGKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+
Sbjct: 565 ALKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEVLVNEEILKATDLAIAEMS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ 
Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRIEAITG+ A          ++ +AS LK     +  R+ ++  E ++      
Sbjct: 680 IGSGVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEERLHQVLAEAKETAKELE 739

Query: 776 KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829
           + + +++    +        + DV F++  +      EL+ + D    K+  SG++++  
Sbjct: 740 QIRKEVSAAGAADIIAGKVVVGDVEFVAAAVKASSIDELRDLADMGLDKMNGSGVVLVGA 799

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           +  + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K  +A
Sbjct: 800 VMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMEA 858

Query: 889 IAGVASFLK 897
           +      LK
Sbjct: 859 LKAGGEALK 867


>gi|78778430|ref|YP_396542.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
 gi|123554842|sp|Q31DD9|SYA_PROM9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78711929|gb|ABB49106.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 886

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/908 (34%), Positives = 500/908 (55%), Gaps = 52/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+ +  H+++PS+SLIP +DPT+M T +GM+PFK +F G ++   +  T
Sbjct: 11  TGDEIRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+T  + L  
Sbjct: 70  SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSV 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V+ EDEE+ K+W+   G+  D+I+++   DNFWS  +TGPCGPCSE+++D    
Sbjct: 126 ENIIVSVFHEDEESAKIWRDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ+ + +  +   L   +IDTGMGLERMA +LQEK N
Sbjct: 186 -KGLQNIDLEDGDRFIEFYNLVFMQYNRDSNGKLTDLKFKNIDTGMGLERMAQILQEKQN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ   ++  + Y  ++  N    ++I DH R+   LI+DG+  +N GRGY
Sbjct: 245 NYETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVAASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG T   + H+       M + YP+L     LI   ++ E+ RF 
Sbjct: 305 ILRRLIRRMVRHGRLLGITNEFLPHIATVGINLMQNNYPDLKNNNDLILNEIKIEEIRFR 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LLD ++S     ++++G  AF+LYDT+G PL++    +       +D+  F 
Sbjct: 365 ETLERGEKLLDELISS--GQKLISGFKAFELYDTYGFPLELT-VEIAEENSISVDVKGFE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +  Q+ RA+A S  +       +   + + +  T F GYDLL                
Sbjct: 422 EEMNAQKERAKAASSNIDLTLEGSLEREI-DLFNKTVFNGYDLLLS-------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + +K I     +V++A  GQKV +V DQT FY E+GGQ+GD G      +
Sbjct: 467 ---------EAEIKGIFLDSTLVKQASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSKDL 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D   + + +F+H+  +++GIL     +   +   NR + + NH+ATHLL  AL +
Sbjct: 518 EVLV-DNVMRKKNVFLHYGTIKKGILTIGQKVKTNVSSSNRAKAAANHTATHLLQSALKS 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   V Q GS +  + LRFD   S PI+  ++  IE  VN  I +N  +  + M++ +A
Sbjct: 577 VVNESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHALEIKNMSKSEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A+ G KY+D VRVV+V        S  LCGGTHV +T E+    I+SE  I AG
Sbjct: 637 LEKGAVAMFGEKYDDEVRVVNVPG-----VSMELCGGTHVKTTSELGSFKIISEEGISAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E         K K 
Sbjct: 692 VRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQAELINKNKEIQKMKD 751

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG---IS 831
           ++          S   +   + + + I  +D   L+S    L   + +  I+++G     
Sbjct: 752 EIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVILGGIPNP 811

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + +K   ++ + +D +    +A  +    A++  GG GGG+P+ AQ+G  + +K   A+ 
Sbjct: 812 ENRKLLFVVSLGDDPVKIGLHAGKIINEIARICSGG-GGGKPNFAQAGAKDIDKLSDALD 870

Query: 891 GVASFLKK 898
              ++L+K
Sbjct: 871 YAKNYLQK 878


>gi|212638588|ref|YP_002315108.1| alanyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|212560068|gb|ACJ33123.1| Alanyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 877

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/915 (39%), Positives = 531/915 (58%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTSAQVRQMFLDFFKEKGHAVEPSASLIPIDDPSLLWINSGVATLKKYFDGRVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL +T++ EDEEAF +W    GL  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPNRLSVTIHPEDEEAFDIWHNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEQFGNDPNDPELYPGGENERYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           M ++LQ+   N+D DLF  +I+A+EQ++G  Y  +    V  +VI DH+R+ +F I DG 
Sbjct: 234 MCSILQDVPTNFDTDLFMPIIRATEQISGETYRTDAEKDVAFKVIADHIRTVTFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+ +    I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQLNIQRPFMYELVPVVGEIMVDYYPEVKEKASFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+    +   + ++G+  F+LYDT+G P+++ ++     
Sbjct: 354 IKNEEERFHETLNEGLAILASVIEKEKQRGSDTISGEDVFRLYDTYGFPVELTEEYAEEE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F + +E QR RARA    + S   +     L +    + F+GYD L     
Sbjct: 414 GMK-VDHAGFEREMERQRERARAARQDVDSMQVQGGV--LGDIKVESTFVGYDQL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +SS+V+ IV+ G++V E   GQ+ +V+  +TPFYAE+GGQ+
Sbjct: 466 ------------------SISSVVEVIVKDGQLVNEVSEGQEAQVILRETPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G+  +  + DVQK   G  +HH +VE+G+++T  + +  +D   R  +  NH+
Sbjct: 508 ADRGWIEGETGKAYVKDVQKAPNGQHLHHIVVEQGVIQTNGTYIAHVDEAARVDIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I +NL 
Sbjct: 568 ATHLLHQALKDVLGVHVNQAGSLVAPDRLRFDFTHFGQVKQEELEQIEAIVNEQIWRNLS 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       ++A A GA AL G KY D VRVV V     G +S  LCGG HV++T EI L 
Sbjct: 628 VAIEYKPLDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   LK +A  LK +  +V+ R++ +  + R
Sbjct: 683 KIVSESGIGAGTRRIEAVTGKAAYRLMNDQIALLKEVAEKLKTNPKDVLTRIDTLMNDMR 742

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +LQ  +     +L+  +         ++  V  ++  ++  D   L++++D L++K+ S 
Sbjct: 743 ELQRENESLAARLSHMEAENLVNQVKEVNGVPLVTSKVNNADMNSLRAMVDDLKQKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           II+L  + +  K +++  VT DL+DR ++A  L +  A   GGGG GGR  MAQ+GG + 
Sbjct: 803 IIVLASVQQN-KVNLIAGVTNDLIDRGYHAGKLIKEVATRCGGGG-GGRADMAQAGGKDA 860

Query: 883 NKADQAIAGVASFLK 897
           NK D+A+  V  ++K
Sbjct: 861 NKVDEALKFVEQWVK 875


>gi|228941556|ref|ZP_04104105.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974486|ref|ZP_04135053.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981080|ref|ZP_04141381.1| Alanyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228778621|gb|EEM26887.1| Alanyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228785203|gb|EEM33215.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818112|gb|EEM64188.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942170|gb|AEA18066.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 880

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               ++  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFNKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLIGQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|126695385|ref|YP_001090271.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|205830177|sp|A3PA95|SYA_PROM0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126542428|gb|ABO16670.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 886

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/908 (34%), Positives = 496/908 (54%), Gaps = 52/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+ +  H+++PS+SLIP +DPT+M T +GM+PFK +F G ++   +  T
Sbjct: 11  TGDEIRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+T  + L  
Sbjct: 70  SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSV 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V+ EDEE+ K+W    G+  D+I+++   DNFWS  +TGPCGPCSE+++D    
Sbjct: 126 ENIIVSVFHEDEESAKIWIDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ+ +    +   L   +IDTGMGLERMA +LQ+K N
Sbjct: 186 -KGLQNIDLEDGDRFIEFYNLVFMQYNRDQNGKLTDLKFKNIDTGMGLERMAQILQKKQN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ   ++  + Y  ++  N    ++I DH R+   LI+DG+  +N GRGY
Sbjct: 245 NYETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVAASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG T   + H+       M + YP+L     LI   ++ E+ RF 
Sbjct: 305 ILRRLIRRMVRHGRLLGITNEFLPHIASVGINLMQNNYPDLKNNNDLILNEIKIEEIRFR 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LLD ++S     ++++G  AF+LYDT+G PL++    +       +D+  F 
Sbjct: 365 ETLERGEKLLDELISS--GQKLISGFKAFELYDTYGFPLELT-VEIAEENSISVDVKGFE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +  Q+ RA+A S  +       +   + + +  T F GY+ L                
Sbjct: 422 EEMNAQKERAKAASSNIDLTLEGSLEREI-DLFNKTVFNGYNSLLS-------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + +K I     +V++A  GQKV +V DQT FY E+GGQ+GD G      +
Sbjct: 467 ---------EAEIKGIFLDSTLVKQASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSKDV 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D   + + +F+HH  +++GIL     +   +   NR + + NH+ATHLL  AL  
Sbjct: 518 EVLV-DNVMRKKNVFLHHGTIKKGILTIGQKVKTNVSSSNRAKAAANHTATHLLQSALKL 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   V Q GS +  + LRFD   S PI+  ++  IE  VN  I +N  +  + M++ +A
Sbjct: 577 IVNESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHALEIKNMSKSEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A+ G KY+D VRVV+V        S  LCGGTHV +T E+    I+SE  I AG
Sbjct: 637 LEKGAVAMFGEKYDDEVRVVNVPG-----VSMELCGGTHVKTTSELGSFKIISEEGISAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E         K K 
Sbjct: 692 VRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQSELINKNKEIQKMKD 751

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG---IS 831
           ++          S   +   + + + I  +D   L+S    L   + +  I+++G     
Sbjct: 752 EIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVILGGIPNP 811

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + +K   ++ + +D +    +A  L    A++  GG GGG+P+ AQ+G  + +K   AI 
Sbjct: 812 ENRKLLFVVSLGDDAVKIGLHAGKLINEIARICSGG-GGGKPNFAQAGAKDIDKLSDAID 870

Query: 891 GVASFLKK 898
              ++L+K
Sbjct: 871 YAKNYLQK 878


>gi|257059315|ref|YP_003137203.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|256589481|gb|ACV00368.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 879

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/906 (37%), Positives = 513/906 (56%), Gaps = 48/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+F+    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+ P Y   T
Sbjct: 9   TGAQIRDKFLQFYASKHHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKNPDYPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  +W+L T+ F+L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWSWELSTQVFNLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V++ED+EAF++W+   G+   +I R+   DNFW    TGPCGPCSE+++D    
Sbjct: 124 ENIVVSVFEEDDEAFQIWQNSIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GEENIDLEDDSRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+ Y+  +     + +VI DH+RS   +IADGI  +N  RGY
Sbjct: 243 NYETDLIFPIIETAAKIAGINYKNTDKKTKVSLKVIGDHVRSVVHMIADGITASNTDRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +         S YP + + +  I+  L+ E+ RF 
Sbjct: 303 VLRRLIRRVVRHGRLIGIEGEFITQVAETAMQLSESVYPNVRERETAIKGELQREESRFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  +++   K+  ++G  AF LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 363 ETLERGEKLLAEIIAKTPKNTAISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEGFE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQ+ R++A    +   T +     L E    T+F+GY   +               
Sbjct: 422 AAMKEQQERSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYSSPQ--------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   + + V+A++  G+ VE A +G +V+++ DQTPFY E+GGQ+GD G   GD +
Sbjct: 466 --------IMAKVQAVLVDGKTVENASAGTEVQIILDQTPFYGESGGQIGDRGYLTGDNL 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV KK  GIFVH   VERGI+  E ++  TID   RR++  +H+ATHLL  AL  
Sbjct: 518 VVRIEDV-KKESGIFVHFGRVERGIIAVENTVTATIDRACRRRVQAHHTATHLLQAALKK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   +SQ GS +  D LRFD    + ITSAEL+ IE  +N  IA+       IM+ E A
Sbjct: 577 VVDESISQAGSLVDFDRLRFDFNCPRSITSAELQEIEALINTWIAEAHDTQVSIMDLEKA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY+  VRV+ V        S  LCGGTHV +T EI L  I+SES I +G
Sbjct: 637 KAKGAIAMFGEKYSAEVRVIDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGISSG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+ G     +L  ++  +K L    K+    +  R+  +  E +  Q      K 
Sbjct: 692 VRRIEAVAGPAVLEYLNVRETVVKDLCDRFKIKPEEISDRITALQSELKTTQKELEAVKQ 751

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L V            +     +   + ++D K L++  + LQ+K+    ++L  +  E 
Sbjct: 752 ELAVAKSDQLLSQAESVGSFKILVSEMGDLDGKALQTAAERLQQKLGEAAVILASVPSED 811

Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K  ++   ++ +    +  A       AK+ GGGG GGRP++AQ+GG + NK  +A+   
Sbjct: 812 KVVLVAAFSDKVHKEKQLMAGKFIGEIAKICGGGG-GGRPNLAQAGGRDANKLPEALLIA 870

Query: 893 ASFLKK 898
              L +
Sbjct: 871 KQQLIE 876


>gi|163942138|ref|YP_001647022.1| alanyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|229135211|ref|ZP_04264010.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|205829987|sp|A9VI09|SYA_BACWK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|163864335|gb|ABY45394.1| alanyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|228648253|gb|EEL04289.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 880

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDQAGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVAISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229186628|ref|ZP_04313789.1| Alanyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228596887|gb|EEK54546.1| Alanyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
          Length = 880

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI   W+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWGWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|302871868|ref|YP_003840504.1| alanyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574727|gb|ADL42518.1| alanyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 881

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/909 (37%), Positives = 518/909 (56%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL   +I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPQRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 178 DKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VT  +Y       V+ RVI DH+R   F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRNKVCEVTNYEYGKNAEKDVSVRVITDHIRGIVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRASRHGRMLGKKEAFLHLIVDTVIESYKNPYPELVQKAEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  ILNG++AFK+YDT+G PLD+ ++I   +G+  +D 
Sbjct: 358 FNQTIDVGLEILENEIEKLKKNKETILNGEIAFKMYDTYGFPLDLTKEIAAEKGII-VDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   ++E    T F+GY+ L+           
Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIEEDI-ETVFVGYETLKQ---------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S +  I  + E V  A       V+ D+TPFYAE+GGQ+ D G   
Sbjct: 466 -------------ESKILKIFMEDEEVAYAKEEDVCFVILDKTPFYAESGGQVADKGILE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K  +G  +H   V +G +    S++  +D   R     NH+ATHLLH 
Sbjct: 513 GEGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVIAKVDEGLRFATMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS ++ D LRFD  H +P++  ++  IE  VN++I Q +PV   + +
Sbjct: 573 ALRKILGQHAQQSGSQVSADRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++    + L+   
Sbjct: 688 VAAGVRRIEAITGNKVYEFILNSQQTLKQLRSKVKASTDSEILAKIEQLENRIKDLENEV 747

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   ++S          +   + +     D   +K   D ++++  S  I+L  
Sbjct: 748 EKYKLLVIESEISSLIDKAVNYGEFKLIVNRKETDDMDYVKLFTDKIKER-DSKAIVLNI 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           + +  K +VL+  +++ + +  +   + +    VL GG GGGRP  AQ GG +  K D A
Sbjct: 807 LEQGNKVTVLMSCSKEAVKKGVDCGKVVKEICAVL-GGKGGGRPEFAQGGGNDILKIDIA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 VQTAENILK 874


>gi|302327820|gb|ADL27021.1| alanine--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 882

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/911 (37%), Positives = 509/911 (55%), Gaps = 53/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R +F++FF+  GH  + SS ++P +DPTLMFTN+GM  FK IF G     ++  
Sbjct: 5   MTSAQVRESFIKFFESKGHLFVRSSPVVPHDDPTLMFTNAGMNQFKAIFLGDNPKGWKRA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD VGR N HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + L 
Sbjct: 65  CNSQKCLRVSGKHNDLDVVGRDNYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKLP 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + RL+ TVY +D+EA+++WK +SGL  D+I+R   + NFW M +TGPCGPCSEI +D+G 
Sbjct: 125 KERLFATVYQDDDEAWQIWKDVSGLPDDRIMRFDAHSNFWEMGDTGPCGPCSEIHYDRGD 184

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E     + G + E +RYIEIWN VFMQ+E+ +      L   ++DTGMG ER+  
Sbjct: 185 LATQAETFKDPIKGVNGENDRYIEIWNNVFMQYERVSDGSLIPLKAKNVDTGMGFERICA 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPAN 294
           +LQ KT+NYD D+F  +I    +++G+ Y        HRVI DH+R+ SF IADG LP+N
Sbjct: 245 ILQGKTSNYDTDVFTPIIAKIAELSGVPYNDGEAGTPHRVIADHIRAISFAIADGALPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +ARLLG  +P +  L+  L   MG A+PE+ + K  +   ++SE
Sbjct: 305 EGRGYVLRRILRRASRFARLLGQKKPFICQLVQVLADTMGDAFPEIRERKEFVASVIKSE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F +TLD GL     + + L K + + GD  F LYDT+G P D+   +   +GL  ID
Sbjct: 365 EESFIRTLDAGLERFAAISAELKKGDKIPGDKVFLLYDTYGFPPDLTGILAEEKGL-LID 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              + + + EQ+ RARA+     +    + W    E   +T F+GY+L      +     
Sbjct: 424 EEGYEKCMNEQKERARANMKQGINTMGTEGWTQYSE--ASTNFVGYELSACETKVVR--- 478

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                                 ++ + V          +V + +PFYAE GGQ+GD G  
Sbjct: 479 ---------------------WREDKGVLS--------IVLETSPFYAEMGGQVGDKGTL 509

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATH 591
           +   + +Q+ D   K     +    V +G           + T+D   R  +  NHSATH
Sbjct: 510 VSADLEIQVFDT-VKVNDTALCRGKVVKGEANEKTMGAVFMATVDNDRRADIRKNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG+HV Q GS ++ + LRFD +H   +T+ E++ +ED VN  I + LPV T
Sbjct: 569 LLQAALREVLGTHVQQQGSFVSNELLRFDFSHFNAMTAEEIQKVEDIVNAKIMECLPVHT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ ++A ASGA AL G KY D+VRVV +    G   S  LCGG HV +TG I ++ IV
Sbjct: 629 DVMDVDEAKASGAMALFGEKYGDKVRVVKMGD-AGVEFSRELCGGLHVQNTGNIGMVKIV 687

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SESS+ AG+RRIEA++G+ A S L    + L +L   L+     V+ R+++ + + + L+
Sbjct: 688 SESSVSAGVRRIEAVSGRGALSLLRAGTQILNALREQLRCKDAEVLDRIQQTFAKTQNLE 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNF----MSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                 KL+L     +      +N     +      +  ++ K+++D +Q K+    + +
Sbjct: 748 KSLQFVKLELATLAAAELLNGGINVMGVNLFVRELSLPDEKYKNLLDGVQNKLDVDSVAV 807

Query: 828 VGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +        S+ ++V +++      A D+ R  AK    G GGGRP  AQ+G     K  
Sbjct: 808 IANKDNGSGSIAVMVGKNVQAKGIKAGDIVRDLAKACN-GKGGGRPDRAQAGTREPEKIA 866

Query: 887 QAIAGVASFLK 897
           +AIA   ++++
Sbjct: 867 EAIANANNWIR 877


>gi|229062084|ref|ZP_04199409.1| Alanyl-tRNA synthetase [Bacillus cereus AH603]
 gi|229169132|ref|ZP_04296847.1| Alanyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228614360|gb|EEK71470.1| Alanyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228717236|gb|EEL68911.1| Alanyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 880

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDQAGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  E ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKALIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVAISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|311031558|ref|ZP_07709648.1| alanyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 877

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/915 (38%), Positives = 532/915 (58%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKHLTSAQVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPAN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGEYFKKEAIDWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               +  +L +T++ EDEEA+K W ++ G+ A++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFEAEKLSVTIHPEDEEAYKYWNEVIGVPAERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE     L         E ERY+EIWNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDLNDPELYPGGENERYLEIWNLVFSEFNHNPDHTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q+   N+D DLF  +I+A+E V+G KY  N       +VI DH+R+ +F + DG 
Sbjct: 234 MVSVIQDVPTNFDTDLFIPIIEATENVSGEKYRTNVEKDTAFKVIADHIRTVTFAVGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ LG   P M  L+P +   M   YPE+ + +  I+  
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQLGINRPFMYELVPVVAEIMVDFYPEVKEKQDFIQRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V++   +D   +++G  AF+LYDT+G P+++ ++ +  +
Sbjct: 354 VKTEEERFHETLNDGLAILSTVIAKAKEDGSTVVSGSDAFRLYDTYGFPVELTEEYVEEQ 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F + +E QR RAR+      S   +     L E    + F+GYD L     
Sbjct: 414 GMT-LDHEGFEKEMEMQRDRARSARQDSNSMQVQSGV--LGEIRTESSFVGYDQL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV+ GE+ + AV+G +V+V+  +TPFYAE+GGQ+
Sbjct: 466 ------------------TAETTLSIIVKNGELADSAVTGDEVQVILAETPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  + +  R  + DVQK   G  +H  +VE G+L  E ++   +  +NR Q+  NH+
Sbjct: 508 ADHGYIVTESGRGFVKDVQKAPNGQNLHTIVVEEGVLNREQAVKAEVHAKNRAQIIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  +LG+HV+Q GS +T D LRFD +H   +T  E++ IE  VN+ I  ++ 
Sbjct: 568 ATHILHQALKDVLGTHVNQAGSQVTADRLRFDFSHFGQVTQEEIEKIEAIVNEKIWASIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV    +  +A A GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VVIENKSISEAKAMGAMALFGEKYGDIVRVVQV-----GEYSLELCGGCHVPNTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RR+EA+TG+ A   L  Q + LK  A+ LK     V  R++ +  + +
Sbjct: 683 KIVSESGIGAGTRRMEAVTGEGAYRLLNDQVQLLKDAAAKLKTKPQEVGTRIDVLLSDMK 742

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +LQ  +     +L   + S        +  V  +   ++  D   L++++D L+ K+ SG
Sbjct: 743 ELQRENQSLASKLGNIEASSLSSKAKDVNGVTMLVSKVAGTDMNNLRTMVDDLKNKLGSG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           II+L  + ++ K ++   VT+DL+++ ++A  + +  A   GGGG GGRP MAQ+GG N 
Sbjct: 803 IIVLASV-QDGKVNISAGVTKDLIEKGYHAGKVVKEVATRCGGGG-GGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLK 897
            + D A+  V  ++K
Sbjct: 861 EQVDSALQSVEDWIK 875


>gi|322434171|ref|YP_004216383.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321161898|gb|ADW67603.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 941

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/970 (35%), Positives = 512/970 (52%), Gaps = 114/970 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL FF+   H  + SSSL+P NDPTL+FTN+GM  FK++F G EK  Y    
Sbjct: 5   SGSQIREDFLRFFEGKAHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGAEKRDYSRAA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120
           + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT    F +
Sbjct: 65  SSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKKDAIAYAWELLTSAAWFAI 124

Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           D+ +LY+T+++       DEEA++ W +  G+ A++I  +   DNFW+M +TGPCGPCSE
Sbjct: 125 DKEKLYVTIFEGDEKVPRDEEAYQFWLE-VGVPAERIFELGAKDNFWAMGDTGPCGPCSE 183

Query: 175 IFFDQG--ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           I++D G      G      E+ +RY+EIWNLVFMQFE+ +      LPK SIDTGMGLER
Sbjct: 184 IYYDLGLAASESGADVPFGEDDQRYMEIWNLVFMQFERASDGTLTPLPKPSIDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRS 281
           ++ VLQ   +NYD DLF  LI+ + ++T      N  +           + R+I DH R+
Sbjct: 244 VSCVLQGVMSNYDTDLFIPLIKRAAELTLKPTSENPDMGHPVGDEKGAASLRIIADHARA 303

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           ++FLIADG+ PANEGRGYVLR+I+RR + + RLLG  +P M  ++ A+  EM  AYPEL+
Sbjct: 304 ATFLIADGVQPANEGRGYVLRKILRRGIRHGRLLGQEQPFMFEMVKAVRDEMKVAYPELV 363

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK----------------------- 378
           +    + + + +E+E+F + +++ +  LD  L  + +                       
Sbjct: 364 EHAERVSKVVLAEEEQFARVIEKAMNELDRTLDAIKQLPSVLDRWNKTPESAPDYKEAEA 423

Query: 379 -----------------------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
                                    +  G  AF  ++T+GLP+D M+D     G   +D 
Sbjct: 424 AFWVTFELVHRTVNKNEARPKSRHGMFPGRTAFFFFETYGLPIDFMEDAARDAG-IELDR 482

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A  E++ RARA   G    T   ++  L      T+F GY  LR           
Sbjct: 483 AEFEKAKIEEQERARASWKGGSQKTASPVYRELA----KTEFEGYSALRVDG-------- 530

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V A+V+ G  V     G++ EVV D T FYA++GGQ+GD G   
Sbjct: 531 --------------ARVIALVKDGVGVHVLSPGEEGEVVLDATSFYADSGGQVGDVGWLY 576

Query: 536 GDGIRLQITDVQ--KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                  + +V+   K       H ++ +  +     +   ++ + R     NH+ THLL
Sbjct: 577 AADHTTVLAEVRGANKPVQGVFAHKVIAKVAIAVGDEVDTVVNGEVRAATMRNHTGTHLL 636

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-- 651
           H AL  +LG HV Q GS +  D LRFD +H   +   EL+ IE  VN  + +N PV T  
Sbjct: 637 HAALREVLGKHVKQAGSLVNRDRLRFDFSHFTGVAEEELREIETIVNAQVLKNTPVETLV 696

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +         GA AL G KY D+VRVV +     G  S+ LCGGTH  +TGEI ++ +V
Sbjct: 697 DVPIDVAVNDYGAMALFGEKYGDKVRVVRI-----GEFSTELCGGTHTLATGEIGVIKLV 751

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ESS+ +G+RR+EAI+G  A             ++  +      +  R+    EE +KL+
Sbjct: 752 GESSVASGVRRLEAISGTGALDEFRRGF----EVSRVVPGGAAGLRDRLASDEEEIKKLR 807

Query: 772 LIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 +L+      +       ++  V  ++  +  VD  +++ ++D L+ K+ SG+++
Sbjct: 808 RELDGLRLKAAQAATADAAAGAIEVKGVKVLAKRLDGVDKAQMRELVDQLRGKLGSGVVV 867

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + E K ++++ VT+DL  +  A  +  L A ++ GG GGGRP +A++GG + ++ D
Sbjct: 868 LGAATAEGKVALIVGVTKDLTGKVQAGKIVGLLAALV-GGKGGGRPDLAEAGGSDVSQLD 926

Query: 887 QAIAGVASFL 896
            A+      +
Sbjct: 927 AALGKAGEVV 936


>gi|160880749|ref|YP_001559717.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|205829959|sp|A9KMW7|SYA1_CLOPH RecName: Full=Alanyl-tRNA synthetase 1; AltName: Full=Alanine--tRNA
           ligase 1; Short=AlaRS 1
 gi|160429415|gb|ABX42978.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 879

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/911 (38%), Positives = 513/911 (56%), Gaps = 50/911 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    V+ +R  +L+FF+  GH  L S SL+P ND +L+  NSGM P K  FTGQE P  
Sbjct: 1   MKVYGVNELRKMYLDFFESKGHLKLNSFSLVPQNDKSLLLINSGMAPLKPYFTGQEIPPK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+  
Sbjct: 61  KRVTTCQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L   RLY ++Y ED+EAF +W K  G++ ++I R+   DNFW     GPCGPCSEI++D
Sbjct: 117 GLSGDRLYPSIYLEDDEAFDIWNKEVGIAPERIFRMGKADNFWEHG-AGPCGPCSEIYYD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      E +R+IE+WN VF QF          L   +IDTGMGLER+A V
Sbjct: 176 RGEKYGCGDPNCTVGCECDRFIEVWNNVFTQFNSDGNGNYEELENKNIDTGMGLERLAVV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+    +DID  K +     ++   +Y  +    ++ R+I DH+RS +F+ +DGI+P+N
Sbjct: 236 VQDVDTLFDIDTMKAIRDHVCKMANAEYKVDPKKDMSIRLITDHIRSVTFMTSDGIIPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG     +  L   +  E    YPEL + K  I + L  E
Sbjct: 296 EGRGYVLRRLLRRAARHGRLLGIQGKFLAELSKTVIAESKDGYPELEEKKEYILKVLTIE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F KT+D+GL +L  +   L     + LNG+ AFKLYDT+G PLD+ ++IL  +G + 
Sbjct: 356 EEKFNKTIDQGLSILSEMEEALVSNGTKTLNGEDAFKLYDTYGFPLDLTKEILEEKGFS- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A++ QR  AR+          +   +   +    + F+GYD           
Sbjct: 415 IDEEGFKKAMQVQRETARSARAVTNYMGADASIYDEIDPAITSNFVGYDRTSH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S +  +  + ++ +E V GQ   ++ D+TPFYA  GGQ  D G
Sbjct: 468 ----------------TSKISVLTTETDLTDEVVGGQTATIIVDETPFYATMGGQTADIG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G     ++ D  K   G   H   V +G  +   ++ LTID Q R+ +  NHSATHL
Sbjct: 512 FIVGKDAEFEVEDTIKLKGGRVGHLGTVTKGSFKVGETVTLTIDTQKRQAIGKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LGSHV Q GS +T + LRFD TH   +T  E+  +E  VN+ IA+N+PVVT 
Sbjct: 572 LQKALRNVLGSHVEQAGSFVTSERLRFDFTHFSALTKEEIAKVEAMVNEEIAKNVPVVTD 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ EDA  SGA AL G KY D VRVV++     G  S  LCGGTHV++TG I +  I+S
Sbjct: 632 VMSVEDAKKSGAMALFGEKYGDSVRVVTM-----GDFSKELCGGTHVANTGSITVFKILS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG+RRIEAIT      +    +E+L   A   K    ++V R+E + EE +    
Sbjct: 687 EAGIAAGVRRIEAITSNAVFEYYKSMEEELHEAAKVAKTEPASLVKRIESLQEELKTALS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + K K +L    L        ++  V  ++  +++ D   L+++ D L++K+   +I+L
Sbjct: 747 ENEKLKAKLANNSLGDVMNQVVEVKGVKLLASKVTDADMNGLRNLGDQLKEKLGECVILL 806

Query: 828 VGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              S E K +++ + T+  +    +A +L +  A ++GGGG GGRP+MAQ+GG N +  D
Sbjct: 807 ASAS-EDKVNLIAMATDGAMAKGAHAGNLIKEVAVLVGGGG-GGRPNMAQAGGKNPSGID 864

Query: 887 QAIAGVASFLK 897
            AI    S ++
Sbjct: 865 AAIEKAVSVVE 875


>gi|298491784|ref|YP_003721961.1| alanyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233702|gb|ADI64838.1| alanyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 880

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/907 (36%), Positives = 508/907 (56%), Gaps = 49/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+F+ + GHELLPS+SL+P  DPT++ T +GM+PFK IF GQ  P ++  T
Sbjct: 9   SGNDIRALFLDFYTQRGHELLPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRTPDFKRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W+L T+ F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWELSTQVFRLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +W+   G++  +I R+  ++NFW    TGPCGPCSEI +D    
Sbjct: 124 ERLVVSVFEEDDEAFGIWRDKIGVNEKRIKRMGADENFWVSGPTGPCGPCSEIHYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +   +    L   +IDTGMGLERMA +LQ K N
Sbjct: 184 L-GEDNIDLEDDSRFIEFYNLVFMQYNRDASENLTPLQNKNIDTGMGLERMAQILQNKPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + +V  + Y  ++     + +VI DH+RS   +IAD I  +N GRGY
Sbjct: 243 NYETDLIFPIIETAAKVAKIDYHHSDEDTKVSLKVIGDHIRSVVHMIADEIRASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G  E  +  +     +   S YP L Q +  I+  L+ E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGICEEFINQVAERAISLSESVYPNLRQREASIKAELQREEANFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTLDRG  LL  ++  + +  +  ++G  AF LYDT+G PL++ Q++     L  +D+  
Sbjct: 363 KTLDRGEKLLAEIIQEVKQKGLTSMSGKSAFTLYDTYGFPLELTQEVAEENNLT-VDVDG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN  +++Q  RA+A    +   T +     L E    T+FIGY                 
Sbjct: 422 FNAEMQKQVERAKAAHETIDL-TVQGSLDKLVEHIHTTEFIGYT---------------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V+ ++  G   E A +G++V++V D+TPFYAE+GGQ+GD G   G 
Sbjct: 465 -------AAATTAKVEVLLVGGISEETAEAGREVQIVLDRTPFYAESGGQIGDKGYISG- 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              L   +  KK    FVH   +E G LR   ++   I+   RR+   NH+ATHLL  AL
Sbjct: 517 DGVLVRVEEVKKESDFFVHFGHIESGTLRIGDNVKAQINTAYRRRSQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++   +SQ GS ++ D LRFD    + +TS E++ IE+ VN  I++       ++   
Sbjct: 577 KKVVDEGISQAGSLVSFDRLRFDFNCPRALTSEEVQQIEELVNTWISEAHSAKIEVLPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY + VRV+          S  LCGGTHV++TGEI +  I+SE+ + 
Sbjct: 637 EAKARGAVAMFGEKYGNEVRVIEFPG-----VSMELCGGTHVNNTGEIGVFKIISEAGVS 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +GIRRIEA++G     +L  +D+ +  L+  LKV    +  R+  +  E R  +      
Sbjct: 692 SGIRRIEAVSGAAILDYLNVRDKVVNDLSDRLKVKPEEIPDRIRTLQTELRNSEKEIQTL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +            +A+   +   + +VD++ LK+  + L + I +G ++L  I +
Sbjct: 752 KSQLAIVKSDSLLKTAKTVAEHRIIVAQMEDVDAESLKAAAERLLQTIGNGAVVLASIPE 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   + ++  +   A       A++  GG GGG+P++AQ+GG + +K  QA+  
Sbjct: 812 AGKVSIVAAFSSEVNKKGVEAGKFVGAIARICSGG-GGGKPNLAQAGGRDASKLPQALET 870

Query: 892 VASFLKK 898
             + L++
Sbjct: 871 AKTELEE 877


>gi|323490022|ref|ZP_08095243.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323396318|gb|EGA89143.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 874

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/915 (38%), Positives = 513/915 (56%), Gaps = 59/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+    IR  +++FF++ GH+  PS+ L+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKNLKAEDIRQMYIDFFKEKGHDQEPSAPLVPFEDPSLLWINSGVATLKKYFDGRVIPNN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGEYFKTEAIHWAWEFLTDEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +L +T++ EDEEA+ +W    G+ A++IIR+    NFW + E GP GP SEIF
Sbjct: 117 WIGFDADKLSVTIHPEDEEAYAIWLNEVGVPAERIIRL--EGNFWDIGE-GPSGPNSEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+EIWNLVF QF         +LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDISDPELYPGGENERYLEIWNLVFSQFNHNPDHTYTLLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA V Q+   NYD DLF  +I+ +E+++G KY       +  +VI DH+R+ +F I DG 
Sbjct: 234 MACVAQDVPTNYDTDLFIPIIKKTEEISGKKYGENAEMDMAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ +A+ LG  +P M  L+P +   M S YPE+   +  I   
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRFAKKLGVEQPFMYDLVPVVGDVMKSFYPEVNAKQDFIIRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++ E++RF +TL  GL +L  V+          + G+ AF+LYDT+G P+++ ++     
Sbjct: 354 MKLEEQRFHETLHDGLTILSSVIEKQKAAGQNEIPGEDAFRLYDTYGFPVELTEEYAEEE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQR RAR     + S  ++     L     A++FIGY        
Sbjct: 414 GM-AVDHKGFETAMQEQRDRARNARQNVNSMQSQSEV--LGNIKEASEFIGYSQTVSD-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + V  I++ GE+V+ A  G++VEV+ DQTPFYAE+GGQ+
Sbjct: 469 ---------------------ANVLFIIKDGELVDSAQEGEEVEVILDQTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    D ++  + +V+K   G  +H   V  G   T+ S+   +D   RR    NH+
Sbjct: 508 ADRGTLSNDFVQASVLNVKKAPNGQNLHSVRVNTGE-LTKTSVQAQVDASERRHTVKNHT 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS + PD LRFD +H   +T  EL++IE  VN+ +   + 
Sbjct: 567 ATHLLHQALKDVLGTHVNQAGSYVGPDRLRFDFSHFGQVTKEELETIEQIVNEKVWDGIA 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   N ++A   GA AL G KY D VRVV +       +S  LCGG HV +T EI L 
Sbjct: 627 VQTGYYNLQEAKEMGAMALFGEKYGDVVRVVEIGG-----YSLELCGGVHVLNTSEIGLF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE  I AGIRRIEA+TG+ A  +L   +  L++ A  LK S  ++V +V+ +  E +
Sbjct: 682 KIVSEGGIGAGIRRIEAVTGKGAYENLKDSETILENAAGLLKSSPRDMVQKVQTVQAEMK 741

Query: 769 KLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            LQ  +     +++         +  K+ D+  +S  +   D+ +L+ ++D L+ K+   
Sbjct: 742 SLQRENESLLAKISNAQSAGILDAAQKVGDITVLSVKVEAKDNNQLRQLLDDLKSKMDKA 801

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L     + K  +   VT+DL    ++A  + +  A+   GG GGGRP MA +G  + 
Sbjct: 802 VIVLGATDGD-KVMLAAGVTKDLAGGDYHAGQIVKHVAEQC-GGKGGGRPDMAMAGAKDA 859

Query: 883 NKADQAIAGVASFLK 897
           +K D+A+  V S +K
Sbjct: 860 SKLDEALESVYSLVK 874


>gi|58698333|ref|ZP_00373249.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225630565|ref|YP_002727356.1| alanyl-tRNA synthetase [Wolbachia sp. wRi]
 gi|58535157|gb|EAL59240.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225592546|gb|ACN95565.1| alanyl-tRNA synthetase [Wolbachia sp. wRi]
          Length = 880

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/902 (44%), Positives = 555/902 (61%), Gaps = 54/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F++FF  N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +  
Sbjct: 1   MKLNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE  LD
Sbjct: 61  VSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL ITVY  D+EA+++W+KISG S+DKIIRITT+DNFWSM  TGPCGPCSEIF+D G 
Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGNTGPCGPCSEIFYDHG- 179

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                   + +EG+R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   
Sbjct: 180 ------SPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVH 233

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF  LI  S++  G      N + H++I DHLR+++FLIA+G+LP NEGR YVL
Sbjct: 234 DNYDIDLFSALISKSQEYCGRT---ENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVL 290

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356
           RR++RRA  Y  LLGY + L+  + P L        MG  YPELI+AK LIE TL+SE+E
Sbjct: 291 RRLIRRAARYIHLLGYNDSLLHRVFPVLIDSTSSAYMGDIYPELIRAKSLIETTLKSEEE 350

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            F  TL +G+ LL+   + L   + L G+ AFKLYDT+G PLDI  DIL  +     D  
Sbjct: 351 NFKDTLMKGISLLEKFTADLKSGDTLPGESAFKLYDTYGFPLDITLDILKEK-KINFDQK 409

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A+ EQ+ RARA   G G  + E++WF L +K+G T+F+GY+               
Sbjct: 410 GFDDAMGEQKERARAKWAGSGEKSVEQVWFDLIDKFGKTKFVGYE--------------- 454

Query: 477 CQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        + + AIV  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I
Sbjct: 455 -------FNEVNDAKILAIVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLI 507

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                + I +   K   +++H  IV+ G +    ++  +ID + R+ L  NHSATHLLH 
Sbjct: 508 KSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHF 567

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L  ILG HV+Q GS + PD LRFD +H+  +T  +L  +ED VN +I +NL   T+I +
Sbjct: 568 VLRKILGDHVTQKGSLVAPDKLRFDFSHNTQVTQDQLFLVEDMVNSLIRENLSTSTKIQS 627

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              AI  GA AL G KY ++VRVV +        S  LCGGTHV  TGEI L  IV+ESS
Sbjct: 628 MNQAIDEGAMALFGEKYGNQVRVVKIGD------SRELCGGTHVEHTGEIGLFKIVTESS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           +  G+RRIEA+TGQ A +++   +  LK +A F+K     ++ R+  + +E ++ +    
Sbjct: 682 VAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEIINRLNILNQERKESEAKIK 741

Query: 776 KR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
              K  ++ E +   +I  +NF+SH  + + +  ++  +  LQ++    II      K+ 
Sbjct: 742 NLYKKLISAESIKSTEINGINFVSHAFTNIPANIIREFV--LQQQKPKTIIAFTATEKD- 798

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  ++I V++DL ++ +A +L  ++ +       GG   +AQ  G + NK D AI  + S
Sbjct: 799 KTVLIIKVSKDLANKISAKELVSIAVE----KNCGGNAELAQ-TGCDSNKIDDAITAICS 853

Query: 895 FL 896
            +
Sbjct: 854 KI 855


>gi|160902096|ref|YP_001567677.1| alanyl-tRNA synthetase [Petrotoga mobilis SJ95]
 gi|205830174|sp|A9BJE0|SYA_PETMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160359740|gb|ABX31354.1| alanyl-tRNA synthetase [Petrotoga mobilis SJ95]
          Length = 876

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/910 (37%), Positives = 530/910 (58%), Gaps = 48/910 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M       IR  FL FF+K GH+ LPSSSLIP NDP L+FT +GMVPFK IF G+ +P Y
Sbjct: 1   MKYFTSEEIRENFLYFFEKKGHKKLPSSSLIP-NDPQLLFTVAGMVPFKPIFWGKVEPTY 59

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +TT QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+E 
Sbjct: 60  TRITTCQKCLRT----NDIENVGRTPRHHTFFEMLGNFSFGDYFKKEAIKWAWEFLTEEL 115

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFF 177
            L   +L+ +VY+ D+EAF +WK    +  +KI+R    +N+W    +TGPCGPCSEI+F
Sbjct: 116 GLPAEKLWASVYETDDEAFNIWKDDIKIPENKILRFGKEENWWGPAGQTGPCGPCSEIYF 175

Query: 178 DQG---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           D G    C        + +  R++EIWN+VF ++          LP+ +IDTG G ER+ 
Sbjct: 176 DTGYTENCPDQENCTPACDCGRFVEIWNIVFTEYYSDENGNLSPLPRKNIDTGAGFERIC 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
            V Q K +N+D DLFK +I+  +++ G+K+    +  V+ +VI DH R+ +FLI++GI+P
Sbjct: 236 AVTQGKYDNFDSDLFKEIIEEIQRIFGVKFRVNKSKDVSIKVIADHSRAIAFLISEGIIP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ +  LL    P +  +L  +  +MG  YPELI+ + LI++   
Sbjct: 296 SNEGRGYVLRRLIRRAVRHGALLEAKGPFLSSILETVIKKMGKIYPELIEKEALIKDISF 355

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F +T+++G+  L+ ++ +L  +  L G +AF+LYDT+G PLD+ ++IL  +G   
Sbjct: 356 MEEEKFFETMEKGMERLNNIIQNLNNETTLPGKIAFELYDTYGFPLDLTKEILSEKG-IE 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + + +QR  AR+ S  +   T ++I+  + +    T+FIGYD L  ++     
Sbjct: 415 VDEKEFTELMNKQREMARSASGKVEYDTEKQIYKEIDKFLTPTEFIGYDKLSSTE----- 469

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V+ I++   IV +A  G ++E+ F +TPFYAE GGQ+ D G
Sbjct: 470 ------------------EVQLIIKGNSIVPQAQEGDEIELFFPKTPFYAERGGQVSDKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++  V+     I  H   +++G ++    + L +D + R+    NH+ATHL
Sbjct: 512 VIYNETFEAEVIHVKPIRNEIISHLVKIKKGSIKNGERVFLKVDEKKRKATEKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ++G H+ Q GS + P+ LRFD TH +P+T  ++K IE  +N+ I + +PV   
Sbjct: 572 LHSALRKVIGEHIRQAGSYVAPERLRFDFTHYEPLTQDQIKQIEYLINEQIQKAIPVNIY 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           + + E+A +    AL   KY + VR+V +        S  LCGGTHVS+TGEI L  I+ 
Sbjct: 632 LKSLEEAKSMDVIALFEEKYGEVVRIVEI-----DDFSRELCGGTHVSNTGEIGLFKILE 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ESSI +G+RRIEAITG  + ++    +  + +L+  L  S+  +  ++E I +  +  + 
Sbjct: 687 ESSISSGVRRIEAITGFESLNYATELESIMTNLSKMLDSSRDQIPDKIEGILKTIKNQEK 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + + QL  +++         I     +   +  ++     +  D L +K+  G+++L
Sbjct: 747 EIKQLQFQLATKNIERLAETPQIIEGEKVVVAQLENLEKDVHANTADILLQKLGRGVVIL 806

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              S  ++ S+++ V++D   +F+A ++AR  A  LGGGG GG P  AQ+GG   NK  +
Sbjct: 807 FNKSNNEQVSLVVKVSKDTSKKFHAGNIARKIASYLGGGG-GGGPTFAQAGGKYANKVKE 865

Query: 888 AIAGVASFLK 897
            I  +  F++
Sbjct: 866 VIEHINDFME 875


>gi|16803544|ref|NP_465029.1| alanyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|47097201|ref|ZP_00234765.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|224501556|ref|ZP_03669863.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|254898330|ref|ZP_05258254.1| alanyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254912178|ref|ZP_05262190.1| alanyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936506|ref|ZP_05268203.1| alanyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|20532249|sp|Q8Y722|SYA_LISMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|16410933|emb|CAC99582.1| alanyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|47014415|gb|EAL05384.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609100|gb|EEW21708.1| alanyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|293590151|gb|EFF98485.1| alanyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 879

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++++ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR+RARA    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGTALDYVSTWVKE 876


>gi|218246265|ref|YP_002371636.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|218166743|gb|ACK65480.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8801]
          Length = 879

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/906 (37%), Positives = 512/906 (56%), Gaps = 48/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+F+    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+ P Y   T
Sbjct: 9   TGAQIRDKFLQFYASKHHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKNPDYPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  +W+L T+ F+L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWSWELSTQVFNLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V++ED+EAF++W+   G+   +I R+   DNFW    TGPCGPCSE+++D    
Sbjct: 124 ENIVVSVFEEDDEAFQIWQNSIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GEENIDLEDDSRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+ Y+  +     + +VI DH+RS   +IADGI  +N  RGY
Sbjct: 243 NYETDLIFPIIETAAKIAGINYKNTDEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +         S YP + + +  I+  L+ E+ RF 
Sbjct: 303 VLRRLIRRVVRHGRLIGIEGEFITQVAETAMQLSESVYPNVRERETAIKGELQREESRFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  +++   K+  ++G  AF LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 363 ETLERGEKLLAEIIAKTPKNTAISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEGFE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQ+ R++A    +   T +     L E    T+F+GY   +               
Sbjct: 422 AAMKEQQERSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYSSPQ--------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   + + V+A++  G+ VE A +G +V+++ DQTPFY E+GGQ+GD G   GD +
Sbjct: 466 --------IIAKVQAVLVAGKTVENASAGTEVQIILDQTPFYGESGGQIGDRGYLTGDNL 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV KK  GIFVH   VERG +  E ++  TID   RR++  +H+ATHLL  AL  
Sbjct: 518 VVRIEDV-KKESGIFVHFGRVERGTIAVENTVTATIDRACRRRVQAHHTATHLLQAALKK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   +SQ GS +  D LRFD    + ITSAEL+ IE  +N  IA+       IM+ E A
Sbjct: 577 VVDESISQAGSLVDFDRLRFDFNCPRSITSAELQEIEALINTWIAEAHDTQVSIMDLEKA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY+  VRV+ V        S  LCGGTHV +T EI L  I+SES I +G
Sbjct: 637 KAKGAIAMFGEKYSAEVRVIDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGISSG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+ G     +L  ++  +K L    K+    +  R+  +  E +  Q      K 
Sbjct: 692 VRRIEAVAGPAVLEYLNVRETVVKDLCDRFKIKPEEISDRITALQSELKTTQKELEAVKQ 751

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L V            +     +   + ++D K L++  + LQ+K+    ++L  +  E 
Sbjct: 752 ELAVAKSDQLLSQAESVGSFKILVSEMGDLDGKALQTAAERLQQKLGEAAVILASVPSED 811

Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K  ++   +E +    +  A       AK+ GGGG GGRP++AQ+GG + NK  +A+   
Sbjct: 812 KVVLVAAFSEKVHKEKQLMAGKFIGEIAKICGGGG-GGRPNLAQAGGRDANKLPEALLIA 870

Query: 893 ASFLKK 898
              L +
Sbjct: 871 KQQLIE 876


>gi|222824071|ref|YP_002575645.1| alanyl-tRNA synthetase [Campylobacter lari RM2100]
 gi|222539293|gb|ACM64394.1| alanyl-tRNA synthetase [Campylobacter lari RM2100]
          Length = 845

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/896 (38%), Positives = 508/896 (56%), Gaps = 58/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +LEFF+  GHE+ PSS L+P +D TL+FTN+GMVPFKNIFTG+         T+ 
Sbjct: 2   DIRKEYLEFFKSKGHEITPSSPLVP-DDATLLFTNAGMVPFKNIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEILKLPKER 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EA+ LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHESDDEAYNLWQK--HIEKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGAEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER++ + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGTLTPLPKPSIDTGMGLERVSAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I++  ++ G  Y   +  ++RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIIESIAKLCGKTYIYESGASYRVIADHIRSSVFLLAQGVGFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           IMRRA+ +  LLG     M  L+  +C  MG  Y  L + K  I+E ++ E+ERF  T++
Sbjct: 299 IMRRALRHGYLLGLKRAFMYELVDVVCELMGGHYTYLNEKKEFIKEQIKLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L      +I +G+VAFKLYDT+G PLD+ QD+L  + L+ +D   FN+ ++
Sbjct: 359 NGIEIFNEELKKT--KDIFSGEVAFKLYDTYGFPLDLTQDMLREKNLS-VDEAKFNELMQ 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ+ RA+A   G G       +  L EK+G   F GY+                      
Sbjct: 416 EQKDRAKASWKGSGDKAVSGDFKVLLEKFGKNTFSGYENYE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 + + AI+ +  +I+ EA +G    ++ ++TPFYA +GGQ  D G    + +   
Sbjct: 457 ----EKTKIIAILDENFKIITEAKAGDIAWLMLEKTPFYATSGGQSADIGFINENEVLDT 512

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                     + +         L+T   ++  ID + R Q++ +HSATHLLHHAL  ILG
Sbjct: 513 QKFFDINLSQVKLKQ------NLKTNDEVLACIDTKKREQIARHHSATHLLHHALREILG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SH+SQ GS +  + LRFD TH K +   ELK IE  VN  I Q       I++  +A  S
Sbjct: 567 SHISQAGSLVEHNKLRFDFTHPKALNKEELKQIEALVNTYIMQANEAKVEILSLNEAKKS 626

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY ++VRV+++        S   CGGTHV ++ EI   YIV ES + AG+RR
Sbjct: 627 GAIALFSEKYQEKVRVLTLGA------SKEFCGGTHVKNSSEIGSFYIVKESGVSAGVRR 680

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A  ++    ++L      LK    +++  V ++  E   L+          +
Sbjct: 681 IEAVVSKAALDYVNENLKELNQAKEELK--IHDILSYVAKLKNEIVSLKNELKN----SS 734

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             +LS  ++  + +    I   DS ++K+++D  + K  + +++L+   KE K  +   V
Sbjct: 735 KTELSSKELNGIQYCVQKI---DSGDIKTMIDEFKNKF-NKVVILLLQEKEGKIIIAAGV 790

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +       A  L +  A++L GG GGGR   A +GG + +K +QA+      +++
Sbjct: 791 KD---ASLKAGALVKEIAQML-GGNGGGRDDFATAGGKDTSKIEQALDHARKIIEE 842


>gi|297584730|ref|YP_003700510.1| alanyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297143187|gb|ADH99944.1| alanyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 877

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 515/915 (56%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKRLTSAEVRQMYLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT   
Sbjct: 61  PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAILWAWEFLTDKR 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +L +T+Y ED+EAF++W +  GL  ++IIR+   +NFW + E GPCGP +EIF
Sbjct: 117 WIGFDADKLAVTIYPEDDEAFEIWHQKVGLPKERIIRL--EENFWDIGE-GPCGPNTEIF 173

Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ER++EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDPNDPEMFPGGENERHLEIWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q+   N+D DLF  LI+ +E+++G  Y  ++      +VI DH+R+ +F I+DG 
Sbjct: 234 MVSVIQDARTNFDTDLFVPLIEETERLSGKTYGEDDQADTAFKVIADHIRTVTFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ LG  +  M  L+P + + M   YPE+ +    I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQLGLDDAFMYKLVPVVGSIMTEFYPEVGEKADFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RF +TL  G+ ++  ++    ++    ++G+  FKLYDT+G P+D+ ++ +   
Sbjct: 354 VKTEEDRFHETLQDGMNMIVNLIKEAKENGQTDISGEAVFKLYDTYGFPVDLTEEYVEEA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F++ ++ QR RAR+     GS   +       E+  A+ F GY  L+    
Sbjct: 414 GLT-VDKAGFDKEMKAQRDRARSARQDSGSMQLQDEVLGSIEE--ASSFTGYTHLQD--- 467

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                  V AIV+ G  V+ A  G +++ +  +TPFYAE+GGQL
Sbjct: 468 --------------------EGTVSAIVKDGSRVDFATEGDEIQFMLTRTPFYAESGGQL 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +G+ +++ DV+K   G  +H   +  G L+   ++   +  + R+ +  NH+
Sbjct: 508 ADQGTVHAEGVTVEVDDVKKAPNGQHLHIGKISEGTLKAGAAVTAEVKERMRKAIIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  D LRFD +H   +T  E+  +E  VN+ I  ++P
Sbjct: 568 ATHLLHQALKDVLGEHVNQAGSSVGDDRLRFDFSHFGQMTEEEVNRVEAIVNEKIWASIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V     + + A   GA AL G KY   VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VEIMNTSIDHAKEMGAMALFGEKYGKEVRVVQV-----GEYSLELCGGCHVQNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            +VSE+ I AG+RR+EA+TG+ A   +  Q   L   A+ LK    +V  RV+++ ++ R
Sbjct: 683 KLVSEAGIGAGVRRVEAVTGKGAYEFMNHQLAYLDEAAAKLKTKVADVPYRVDQLQKQLR 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +          +L+  +          I  +  +   +   D   L+   D L++KI SG
Sbjct: 743 EKDKEVESLSAKLSNLEAGSVLDDVETIEGIPVLYKQVEAKDMNTLRKTADTLKEKIPSG 802

Query: 824 IIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           II++  ++ + K S++  V++D + + ++A +L +  A + GGGG GGRP MAQ+GG N 
Sbjct: 803 IIVIGAVTGD-KVSIVASVSKDYVTEGYHAGNLVKEIAGMCGGGG-GGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLK 897
           +   +A+  V   +K
Sbjct: 861 DALPEALKKVPELIK 875


>gi|294793973|ref|ZP_06759110.1| alanine--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455543|gb|EFG23915.1| alanine--tRNA ligase [Veillonella sp. 3_1_44]
          Length = 871

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/909 (36%), Positives = 496/909 (54%), Gaps = 55/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P  + +
Sbjct: 1   MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QK +R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD
Sbjct: 61  TTCQKSMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG 
Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ 
Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQG 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N++ DL   +I+A+ +  G+ Y    N  V+ +VI DH R+ + LI+DG+LP+NEGR
Sbjct: 234 CKTNFETDLIFPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ER
Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGITSIAEKQDFVKRVVQNEEER 353

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID 
Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDH 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A++EQR RAR   +   +         LK++                        
Sbjct: 413 EGFEAAMKEQRERAREARVKEDAKVATPDITFLKDE------------------------ 448

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                 ++     +S V  + +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +
Sbjct: 449 ----ELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIV 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G   ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH 
Sbjct: 505 GPMGKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+
Sbjct: 565 ALKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ 
Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFIGSFRLTSEAG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRIEAITG+ A          ++ +AS LK     +  R+ ++  E ++      
Sbjct: 680 IGSGVRRIEAITGRAALEAAKQDRLTIERMASELKTKSPQIEERLHQVLTEAKETVKELE 739

Query: 776 KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829
           + + +++    +        + DV F+   +      EL+ + D    K+  SG++++  
Sbjct: 740 QIRKEVSAAGAADIIAGKVMVGDVEFVGAAVKASSIDELRDLADMGLDKLNGSGVVLVGA 799

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K  +A
Sbjct: 800 AMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMEA 858

Query: 889 IAGVASFLK 897
           +      LK
Sbjct: 859 LKAGGEALK 867


>gi|224500670|ref|ZP_03669019.1| alanyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 879

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++++ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR+RARA    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPKEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGTALDYVSTWVKE 876


>gi|19704032|ref|NP_603594.1| alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|22096188|sp|Q8RFJ8|SYA_FUSNN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|19714224|gb|AAL94893.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 867

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGNYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 IQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y        + +VI DH R+ +FL+ DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAGKITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEIAYPDLRKNVENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLTNGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVIVL 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 416 -REEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTEFTGYEKTEDEGKLLSLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +   +                               K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 EAKDR-------------------------------KYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQ K + IF+H   +E+G+     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFAGKVLDVQ-KQKDIFIHTVKLEKGMPEENKTYKLEVDVVKRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  I+G+HV Q GS +  + LRFD +H + +T  +L  IED VN  I + + VV   
Sbjct: 563 HKALREIVGTHVQQAGSLVDSEKLRFDFSHYEALTEEQLSKIEDIVNKKIREGIEVVVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  I SE
Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVHGF-----STELCGGTHIDNIGKIGLFKITSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      + + LK++   LK +  N+V +VE+  E  +  +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEADILKNIEQKLKATNSNLVEKVEKNLETLKDTEKE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I  V  +     +  +++L++++D ++   +  II+L 
Sbjct: 738 LEILKQKLALFETKAAISGMEEIGGVKVLIAAFKDKSTEDLRTMIDTIKDNNEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-ITGGKGGGRPDFAQAGGKDEGKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVREIIE 863


>gi|21673007|ref|NP_661072.1| alanyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|41018235|sp|Q8KG04|SYA_CHLTE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21646071|gb|AAM71414.1| alanyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 885

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/933 (36%), Positives = 499/933 (53%), Gaps = 85/933 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR +FL+FF    H ++ S+ +IP  DPTL+FTN+GM  FK++F G+    Y   
Sbjct: 1   MNSREIRQSFLDFFAGKEHRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLGKGTREYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+L+T+ + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIGWAWELMTEVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +DEE+FKLW+  + +    I++    DNFW M ETGPCGPCSEI  D   
Sbjct: 121 KERLYATVYHDDEESFKLWQSETDIEHSHILKFGDKDNFWEMGETGPCGPCSEIHIDLTP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GG P  +    R IE+WNLVF+Q+++Q       LP+  +DTGMG ER+A VLQ K+
Sbjct: 181 DGSGG-PLVNVGDHRVIELWNLVFIQYDRQADGTLVPLPQKHVDTGMGFERVAAVLQGKS 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F  L     ++TG  Y    +  + +  RVI DH R+ +F ++DG +P NEGR
Sbjct: 240 SNYDSDVFAPLFDRITELTGTVYTASLDSPSDIAMRVIADHCRTLTFALSDGAMPGNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ YA  LG  EP++  ++  L   MG  +PEL + +  +E+ +R+E+E 
Sbjct: 300 GYVLRRILRRAVRYAGTLGCHEPIIYKMVEVLVRTMGDVFPELEKQQATVEKIIRAEEES 359

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL RG  + + V++ +       ++G  AFKLYDT G PLD+ + +    GL GID 
Sbjct: 360 FLVTLGRGTEIFNEVVADMKTAGSTTISGADAFKLYDTFGFPLDLTRLMAAEVGL-GIDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   + EQ++RAR    G      +   +        T F+GYD+L            
Sbjct: 419 AGFEHCMMEQKTRARMDRKGKMQMQDDGGEWQWFAPEAPTTFVGYDMLETEAT------- 471

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                    +V   VSG K+ +V DQTPFYAE+GGQ+GD G   
Sbjct: 472 -------------------------LVAARVSGDKLLMVLDQTPFYAESGGQVGDHGTLE 506

Query: 536 GDGIRLQITDVQKKAEGIFV-----------HHAIVERGILRTEMSLVLTIDYQNRRQLS 584
             G RL +TD +K  E I                          +S+   +D   R    
Sbjct: 507 TAGYRLDVTDTRKDGEQIVHVVTSAHDKVRDCAVTPADVSFDGVVSVKAAVDRDRRVATE 566

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS +TP+ LRFD +H   +++ EL+ +E  VN  I 
Sbjct: 567 RNHTATHLLHAALRKVLGEHVQQKGSLVTPERLRFDFSHFSKVSAEELEQVEHEVNAEIR 626

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +   V     +  E+A+A GA A  G KY DRVRVV V        S  LCGGTHV + G
Sbjct: 627 KAASVTKHADVPYEEALALGALAFFGDKYADRVRVVEVPG-----ISIELCGGTHVGNIG 681

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEE 762
           +I ++ IVSESS+ AGIRRIEA+TG  A + L  +   L+ + + LK+      G +++E
Sbjct: 682 QIGMVKIVSESSVAAGIRRIEAVTGAAAEALLWQEYRDLQEIKNLLKLKADEEAGPKIKE 741

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE + L     + +L   ++ L+       ++     M+  +  V   EL+    AL+
Sbjct: 742 LLEEKKALDKQLQESRLAGLLDRLAASLAGGEEVNGCRIMTERLDGVSGDELRQAAVALR 801

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLG-------GGGG 868
           +++   + +L G++ + K S++   +++ +   + +A  L + +A  +            
Sbjct: 802 ERVPCAVGLLCGVA-DGKVSLVAFASDEAVKSLKLDAGKLVKEAAASVKGGGGGKL---- 856

Query: 869 GGRPHMAQSGGPNGNKADQAIA----GVASFLK 897
                +A +GG      D+AI      V S L+
Sbjct: 857 ----ELATAGGKEPAGIDKAIEVFVASVKSALQ 885


>gi|302550143|ref|ZP_07302485.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302467761|gb|EFL30854.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 890

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/924 (36%), Positives = 506/924 (54%), Gaps = 64/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA ++W ++ G+  ++I R+   DN+WSM   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYKDDDEAERIWHEVVGVPKERIQRLGMKDNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+ +       + +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYVRGEGTGKDSFEILGELPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I  + ++TG++Y   +    + RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVINKATELTGVRYGDAHDSDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVDTVIEMMGQQYPELITDRERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+  F KTL  G  +LD  +  +      +L GD AF L+DT G P+D+  ++  
Sbjct: 355 KVALAEENAFLKTLKAGTNILDTAVTDTKAAGSTVLPGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT-EKIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G      +  + ++ GAT FIGY     
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAQAKKTGHAGAGAYREIADQAGATDFIGYTDTES 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGILVDGASSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG   +  G  ++I D QK   G++VH  +V+ G +        +ID + R  ++
Sbjct: 511 GQIGDTGKIKVDTGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAHASIDGRRRTAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVQAEVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQK 818
            + +  +    K + +  ++  +       DV  ++     +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGIAVVTGQVPDGTTADDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           +IQ G   ++ L  ++   K   +I   E   +R   A DL R +AK LGGGG GG+P +
Sbjct: 806 RIQGGRPAVVALFAVAN-GKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDV 863

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ GG N      A+  V   + +
Sbjct: 864 AQGGGQNPAAVGDAVDAVERLVAE 887


>gi|295706696|ref|YP_003599771.1| alanyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294804355|gb|ADF41421.1| alanyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 877

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/915 (39%), Positives = 522/915 (57%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+FF++ GH++ PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTSAQVRQMYLDFFKEKGHDVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AIQ AW+ LT  K
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIQWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +L +TV+ EDEEAFK+W +  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDADKLSVTVHPEDEEAFKIWNEKMGVPKERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDLTDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q+   N+D DLF  +I+A+E ++G KY  N+      +VI DH+R+ +F + DG 
Sbjct: 234 MVSVIQDVQTNFDTDLFMPIIEATENISGAKYRTNDEQDTAFKVIADHIRTVTFAVGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+ +    I+  
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKKLNINRPFMYELVPVVGEIMVDFYPEVKEKTDFIQRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+        + + G+  F+LYDT+G P+++ ++     
Sbjct: 354 VKNEEERFHETLNDGLAILATVIKKEKAQNSDTVQGEDVFRLYDTYGFPVELTEEYAEDE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  ID   F + +E QR RARA      S   +     L E   A++F+GYD       
Sbjct: 414 NMK-IDHAGFEREMEAQRERARAARQDSSSMQVQGGV--LGEVTVASEFVGYD------- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                            N V ++V+AI+  GE+V+ A +G + +V+   TPFYAE+GGQ+
Sbjct: 464 ----------------KNEVETVVEAIIVDGELVDRAEAGTEAQVILSHTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G         ++ DVQK   G  V    V  G L    +   T+D +NR  +  NH+
Sbjct: 508 ADQGTIQSAAGTAEVKDVQKAPNGQNVQTVAVTNGELVKGETYTATLDEENRSAIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG+HV+Q GS +T D LRFD +H   +T  EL+ IE  VN+ I  ++ 
Sbjct: 568 ATHLLHQALKDTLGTHVNQAGSLVTADRLRFDFSHFGQVTQEELEKIEQIVNEKIWDSIS 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VQIENKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSVIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   LK  A+ +K +  ++VGRVE + EE R
Sbjct: 683 KIVSESGIGAGTRRIEAVTGKAAYQLMNDQVGLLKEAAAKVKSNPRDLVGRVEGLLEEIR 742

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            LQ  +     +L   +          I  VN ++  ++  D   L++++D L++K++S 
Sbjct: 743 NLQRENDSLSTKLGNIEAGNLVDRVQNINGVNVLAAKVNATDMNNLRAMVDDLKQKLESA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L     E K +++  VT+DL+ +  +A  L +  A + GGGG GGRP MAQ+GG + 
Sbjct: 803 VIVLASPQGE-KVNIIAGVTKDLIAKGHHAGKLVKEVATICGGGG-GGRPDMAQAGGKDA 860

Query: 883 NKADQAIAGVASFLK 897
           ++ ++A+  V  ++K
Sbjct: 861 SQIEKALGTVEEWVK 875


>gi|260438422|ref|ZP_05792238.1| alanine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292809008|gb|EFF68213.1| alanine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 884

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/910 (37%), Positives = 507/910 (55%), Gaps = 52/910 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRKYLEFFESKGHLKMNSFSLVPQNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D+DNVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LTK   +++ 
Sbjct: 66  CQKCIRTG----DIDNVGKTARHLTFFEMLGNFSFGDYFKHEAINWSWEFLTKVIGMEED 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRI-----TTNDNFWSMAETGPCGPCSEIFFD 178
           RLY ++Y +D+EAF +W K  G+ A++I R         DNFW     GPCGPCSEI++D
Sbjct: 122 RLYPSIYADDDEAFNIWTKEVGVPAERITRFYRDENGDCDNFWEHG-AGPCGPCSEIYYD 180

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +G     G P      + +R++E+WN VF QFE         L + +IDTGMGLER+A V
Sbjct: 181 RGIKYGCGKPDCKVGCDCDRFMEVWNNVFTQFESDGHHHYTELKQKNIDTGMGLERLAVV 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +DID  K +     ++ G+ Y    +  V+ R+I DH+RS +F+ +DGI+P+N
Sbjct: 241 VQDVDSVFDIDTMKAIRDKICELAGVTYMEDEHKDVSIRLITDHIRSVTFMASDGIIPSN 300

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + R LG     +  L   +       YPEL + + LI + L +E
Sbjct: 301 EGRGYVLRRLLRRAARHGRTLGIDGLFLAKLATTVIDSSKDGYPELDEKRELILKVLTTE 360

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E F KT+D+GLV+L  + S L       L+G+ AF+LYDT+G P+D+  +IL  +G   
Sbjct: 361 EENFNKTIDQGLVILSDLESRLVKEGKTCLDGEDAFRLYDTYGFPIDLTNEILEEKGFT- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  FN A+ +Q+  AR           +   +   +    ++F+GYD L         
Sbjct: 420 VDMDGFNNAMNKQKETARGARKETNYMGADATVYDKIDTRITSEFVGYDTLE-------- 471

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +    +I +    G +  ++ ++TPFYA  GGQ GDTG
Sbjct: 472 ---------------TESEITVLTTSEDITDTLAEGMEGTIIVNKTPFYATMGGQQGDTG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             I +G   ++ D  +   G   H   V  G  +    + LT+D + R   + NHSATHL
Sbjct: 517 VIICNGSVFEVIDTIRLKGGRVGHVGKVTAGSFKVGDKVTLTVDEKKRIDTAKNHSATHL 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q GS +TPD LRFD TH +P+T  E++ +E  VN+ I +++ V T+
Sbjct: 577 LQEALRIVLGNHVEQAGSLVTPDRLRFDFTHFQPMTEEEIEKVEAIVNEQIEKSIDVETK 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           ++  EDA  +GA AL   KY D VRVV +     G  S   CGGTHVS+TG I    IVS
Sbjct: 637 VLAIEDAKKTGAKALFNEKYGDTVRVVCM-----GDFSKEFCGGTHVSNTGLINSFKIVS 691

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+TG    ++    ++K   +    K +  NV  ++  +  E + L  
Sbjct: 692 ESGVAAGVRRIEALTGNGVFAYYKDIEKKYNDICKAAKATPANVEEKIAHMQAEIKSLNS 751

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +   E L         +  V F++  +++VD  EL+++ D L+ KI SG+++L
Sbjct: 752 EIESLKNKAANEALGDVLNQAEDVNGVKFLAVKLNDVDMNELRNLSDDLKSKIGSGVVVL 811

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                  K ++++  T+D++    +A ++ + +A  +GGGG GGRP+MAQ+GG N    +
Sbjct: 812 ASAMGSDKVNLIVTATDDIVKAGVHAGNIIKSAAPCVGGGG-GGRPNMAQAGGKNPAGIE 870

Query: 887 QAIAGVASFL 896
           +A       L
Sbjct: 871 KAFETAKETL 880


>gi|225572273|ref|ZP_03781137.1| hypothetical protein RUMHYD_00567 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040257|gb|EEG50503.1| hypothetical protein RUMHYD_00567 [Blautia hydrogenotrophica DSM
           10507]
          Length = 868

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/900 (39%), Positives = 513/900 (57%), Gaps = 48/900 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            FLEFF+  GH  L S SLIP ND +L+  NSGM P K  FTG E P  + VTT QKC+R
Sbjct: 1   MFLEFFESKGHLALKSFSLIPQNDKSLLLINSGMAPMKPYFTGAEIPPRKRVTTCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+   LD  RLY ++
Sbjct: 61  TG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVVGLDPDRLYPSI 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y +DEEAF++W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE      PG
Sbjct: 117 YLDDEEAFEIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCKKPG 175

Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                + +RYIEIWN VF QFE   +     L + +IDTGMGLER+ATV+QE  + +D+D
Sbjct: 176 CTVGCDCDRYIEIWNNVFTQFENDGEGHYTELEQKNIDTGMGLERLATVVQEVDSIFDVD 235

Query: 248 LFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
               L     ++ G++Y  +    V+ R+I DH++SS+F+I+DGI+P NEGRGYVLRR++
Sbjct: 236 TNCALRNRVCELAGVEYLKDEKTDVSIRLITDHVKSSTFMISDGIMPTNEGRGYVLRRLI 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + RLLG     M  L   +       YPEL + K  I   L +E+ +F KT+D+G
Sbjct: 296 RRAARHGRLLGIDGKFMAKLSATVIEGSKDGYPELEEKKDFIFNVLNNEENQFNKTIDQG 355

Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L  +   + K   ++L G+ AFKLYDT+G PLD+ ++IL  +G   +D   F +A+E
Sbjct: 356 LRILADLEEKMEKAGTKVLTGEEAFKLYDTYGFPLDLTKEILEEKGR-QVDEEGFQKAME 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR +AR           +   +   +    T+F+GY+ L                    
Sbjct: 415 IQRKQAREAREVSNYMGADATVYDEIDPSVTTEFVGYEHL-------------------- 454

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S +  +  + EIV   + GQ+  V   +TPFYA  GGQ GDTG         Q+
Sbjct: 455 ---AFESEITVLTTEKEIVSSLMEGQRGTVFVKKTPFYATMGGQEGDTGLISTANGVFQV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            +  K   G + H   +  G+L  +  + L ++ Q RR    NHSATHLL  AL  +LG+
Sbjct: 512 EETIKLRGGKYGHVGHMVSGMLSVQDVVRLEVNVQGRRDTEKNHSATHLLQKALKVVLGA 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS +TPD LRFD  H + +T  E++ +E  VN  I + LPV T IM+ E+A  +G
Sbjct: 572 HVEQKGSLVTPDRLRFDFAHFQAMTPEEMEKVEKLVNQEIQEALPVRTDIMDIEEAKKTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY++ VRVVS+     G  S  LCGGTHVS+T +I+L  +VSES I AG+RRI
Sbjct: 632 AMALFGEKYDEEVRVVSM-----GEFSKELCGGTHVSNTSQILLFKLVSESGIAAGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG     +    +  L   A   K S G +  ++  +  E + L   +   K ++  
Sbjct: 687 EALTGNGVMEYYKNLESLLNQAAKAAKTSTGELSDKIFHMQNEIKALHSENESLKSKMAQ 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + L        ++  V  ++  +  VD   L+ + D L++K++ G+++L+ +    K ++
Sbjct: 747 DSLGDVMNQVTEVKGVKLLAVKLENVDVSGLRDLGDQLKEKLEEGVVVLITV-NSGKVNL 805

Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L + T+  +    +A +L + +A ++GGGG GGRP+MAQ+GG +  K ++A+  +   L+
Sbjct: 806 LAMATDGAMKQGAHAGNLIKAAAAIVGGGG-GGRPNMAQAGGKSPEKVEEALQKIPEILE 864


>gi|325679252|ref|ZP_08158839.1| alanine--tRNA ligase [Ruminococcus albus 8]
 gi|324109038|gb|EGC03267.1| alanine--tRNA ligase [Ruminococcus albus 8]
          Length = 885

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/906 (33%), Positives = 471/906 (51%), Gaps = 44/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++++ +R ++L+FF+  G     S  L+P ND +L+   +GM P K  FTGQE P    +
Sbjct: 4   TSLNDLRESYLKFFESKGCLRHKSYPLVPQNDKSLLLIVAGMAPLKPYFTGQEVPPRVRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T RH T+FEMLGNFSFG YFK+ AI  AW+ +T    L 
Sbjct: 64  TTCQKCIRTG----DIENVGKTARHGTYFEMLGNFSFGDYFKKEAIAWAWEYVTDVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+++VY++D+EA K+W +  G+  D I+R+   DNFW     GPCGPCSEI+FD+GE
Sbjct: 120 LDRLHVSVYEDDDEAEKIWHEEIGVPMDHIVRMGKEDNFWEAGTDGPCGPCSEIYFDRGE 179

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+E WNLVF QFE+        L + +IDTGMGLER+A ++Q 
Sbjct: 180 KYGCGKPTCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAALMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +D+D  K +     ++ G +Y  E    V+ RVI DH+R+ +FL +DG+LP+NEGR
Sbjct: 240 VDSIFDVDTVKAIRDHICKIAGCEYGKEYKKDVSIRVITDHIRAVTFLASDGVLPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + +LLG     +  L+  +       Y EL +    I + L +E++ 
Sbjct: 300 GYVMRRLLRRAVRHGKLLGINGLFLKDLVKTVVDCNKCEYNELEEKFDYIVKVLTTEEQN 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  T+DRG+ +LD  +  L  +    L+G+  FKL DT+G PLD+ ++IL  +GL   D 
Sbjct: 360 FNSTIDRGMKILDEYIEKLQAEGKTTLDGESCFKLSDTYGFPLDLTREILEEKGLTA-DE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +   +E+QR  AR      G    E+  F   +K  +T+F GYD              
Sbjct: 419 EGYAVCMEKQRETARGARESQGYMGAEETVFHKIDKNVSTKFTGYDKTED---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        + ++  +    +++E A     V +V DQT FYAE+GGQ GDTG   
Sbjct: 469 -------------TGVISYLANDEDLIENAGVEDVVYIVPDQTCFYAESGGQAGDTGVIE 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               + ++ D QK   G F     V  G L    ++   +D   R     NHS  HLL  
Sbjct: 516 TATGKAEVLDTQKAVGGKFALKVKVTEGALTKGQAVTFKVDKAKRLATMRNHSCAHLLQS 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL T+LG HV Q G  +    LRFD +H + +T+ E   +E  VN  I   L +    M 
Sbjct: 576 ALRTVLGEHVHQAGQLVDSQRLRFDFSHFEAMTADEKAQVEALVNKYIFDALDITMEEMP 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A   GA AL G KY + VRVV++        S   CGGTH+ +T +I L  I+SE+S
Sbjct: 636 IAEAQKLGAMALFGEKYGETVRVVTMGDR-ANAASIEFCGGTHLDNTSKIGLFKIISENS 694

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIH 774
           + +G+RR+EA+TG      L    E +   A  LK  +   +V R   + +E + L+   
Sbjct: 695 VASGVRRVEAVTGTGVLELLNSNIETINKAAETLKLNNPAELVSRCGAVMQEIKGLEKER 754

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              +  +              +  V+  +  ++ V    L+ + D L+    + +I+++ 
Sbjct: 755 DSLETAMANMRAKSVLENAVDVKGVSVATAQLNGVKPDVLRKMADELKAANDN-VIVVMT 813

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K ++++   +D + +  +A  +A   A  L  G GGGRP  A +G  + +    A
Sbjct: 814 TVNGDKGNIVVAAGKDAVAKGAHAGKIAGKIAA-LTNGKGGGRPDSAMAGVGDVSLIASA 872

Query: 889 IAGVAS 894
           +   A 
Sbjct: 873 LEKAAE 878


>gi|262048613|ref|ZP_06021496.1| alanyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|259163260|gb|EEW47819.1| alanyl-tRNA synthetase [Staphylococcus aureus D30]
          Length = 876

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/914 (37%), Positives = 509/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD        
Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSA
Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M+   A   GA AL G KY+D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYSDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q  
Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              ++++ +  ++K
Sbjct: 861 NISKSLSFIKDYIK 874


>gi|15894955|ref|NP_348304.1| alanyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|20532257|sp|Q97IG3|SYA_CLOAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15024640|gb|AAK79644.1|AE007677_6 Alanyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325509092|gb|ADZ20728.1| alanyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 881

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/911 (35%), Positives = 512/911 (56%), Gaps = 50/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR ++L FF+K  H  LPS SLIP ND +L+  N+GM P K  FTG + P    V
Sbjct: 4   MGLNDIRESYLSFFEKKEHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFTGLQTPPKTRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++N+G+T+RH TFFEMLGNFSFG YFKE  I  AW+ +T+     
Sbjct: 64  TTCQKCIRTG----DIENIGKTSRHGTFFEMLGNFSFGDYFKEEVISWAWEYITEVLKFP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + R+YIT+Y +D+EAFK+W + +G+   +I R    DNFW    +GPCGPCSE+ FD+ E
Sbjct: 120 KDRIYITIYLDDDEAFKIWTEKAGVDPSRIFRFGKEDNFWEHG-SGPCGPCSEMHFDRRE 178

Query: 182 CIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                         ++ +  IE WNLVF QF++        L   +IDTGMGLER+AT++
Sbjct: 179 KPDLIKTREKFIELQDKDEVIEFWNLVFTQFDKDEDGNYNKLKNPNIDTGMGLERIATIM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   + ++ID  + ++ A  ++  +KY     N V+ R+I DH+RS +F+I+DGILP+NE
Sbjct: 239 QNTDSIFEIDTIREVLDAVCKICNVKYGENHKNDVSLRIITDHIRSVTFMISDGILPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + + LG  +  +  L   +      AY EL + +  I+  +  E+
Sbjct: 299 GRGYVLRRLLRRAARHGKTLGIEKTFLCGLCDVVIKNSKGAYKELEEKQDYIKNVIEIEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           +RF +TLD G+ +L   +    L   ++++G+ AF+LYDT+G P+++ Q+IL  +G   I
Sbjct: 359 KRFDETLDSGMEILKNYIDELSLENKKVMSGEKAFRLYDTYGFPVELTQEILEEKG-IEI 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F+  +E+Q++RAR           E        +   T+F+GY+            
Sbjct: 418 DMNDFHSEMEKQKNRARDAREESNYMGKEIKLIDKLPESVTTKFVGYNSTSTD------- 470

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S V+ +++  E V     G+   VV ++TPFYAE GGQ+GD G 
Sbjct: 471 ----------------SKVEVLIKDDEFVSTINEGESGIVVTEETPFYAEMGGQIGDKGI 514

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G     ++ D +    G  +H   V +G +    ++ L ++Y+ R+ +  NH+ATH+L
Sbjct: 515 IFGKNGEAKVVDCKNNISGKIIHIVQVVKGSIEKNENVTLEVNYKKRKDICKNHTATHML 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  ++GSH++Q+GS +  + LRFD TH   +T  E+  +E  VND I     V T I
Sbjct: 575 QAALKKVVGSHINQSGSYVDNERLRFDFTHFTALTDEEILKVEAMVNDEIMAAYDVKTDI 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++A  +GA AL   KY +RVRVVSV     G  S  LCGGTHV+++GEI L  I+SE
Sbjct: 635 MSVDEAKKTGAMALFDEKYGNRVRVVSV-----GDFSRELCGGTHVNNSGEIGLFKIISE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AGIRRIEAITG+ A  +    D  ++++   LK S+ +++ ++ +   E ++ +  
Sbjct: 690 SGVAAGIRRIEAITGKEAVRYTEENDNLIRNIEQELKCSKKDILNKINQYHSELKEKEKE 749

Query: 774 HAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L          S  +++ V +++  +  +    L+ + D ++ KI  G+++L 
Sbjct: 750 INILKGKLASGFEENILSSVKEVSGVKYVASEVKGISGDTLRELCDKVRNKIDDGMVLLA 809

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
               E K   + + +++ + +  +   + +  A +  GG GGGRP MAQ+GG +G K + 
Sbjct: 810 SKDGE-KVQFVAMASKNAVKKGVHCGKVIKEVASMC-GGNGGGRPDMAQAGGKDGEKLET 867

Query: 888 AIAGVASFLKK 898
           A+  V + ++K
Sbjct: 868 ALKEVGNIMEK 878


>gi|253733131|ref|ZP_04867296.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728887|gb|EES97616.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|329733217|gb|EGG69554.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 877

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/915 (37%), Positives = 507/915 (55%), Gaps = 58/915 (6%)

Query: 1   MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M      S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P 
Sbjct: 1   MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
              +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  
Sbjct: 61  KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSD 116

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EI
Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173

Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           F+D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLE
Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           RMA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG
Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+ 
Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD       
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD------- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+
Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHS
Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGTTVSAEVNQNDRRDIQKNHS 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + 
Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L 
Sbjct: 628 VNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767
            IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E 
Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEE 742

Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q 
Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG   
Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860

Query: 883 NKADQAIAGVASFLK 897
               ++++ +  ++K
Sbjct: 861 ENISKSLSFIKDYIK 875


>gi|261415443|ref|YP_003249126.1| alanyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371899|gb|ACX74644.1| alanyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 882

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/911 (37%), Positives = 508/911 (55%), Gaps = 53/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R +F++FF+  GH  + SS ++P +DPTLMFTN+GM  FK IF G     ++  
Sbjct: 5   MTSAQVRESFIKFFESKGHLFVRSSPVVPHDDPTLMFTNAGMNQFKAIFLGDNPKGWKRA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD VGR N HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + L 
Sbjct: 65  CNSQKCLRVSGKHNDLDVVGRDNYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKLP 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + RL+ TVY +D+EA+++WK +SGL  D+I+R   + NFW M +TGPCGPCSEI +D+G 
Sbjct: 125 KERLFATVYQDDDEAWQIWKDVSGLPDDRIMRFDAHSNFWEMGDTGPCGPCSEIHYDRGD 184

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E     + G + E +RYIEIWN VFMQ+E+ +      L   ++D GMG ER+  
Sbjct: 185 LATQAETFKDPIKGVNGENDRYIEIWNNVFMQYERVSDGSLIPLKAKNVDIGMGFERICA 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPAN 294
           +LQ KT+NYD D+F  +I    +++G+ Y        HRVI DH+R+ SF IADG LP+N
Sbjct: 245 ILQGKTSNYDTDVFTPIIAKIAELSGVPYNDGEAGTPHRVIADHIRAISFAIADGALPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +ARLLG  +P +  L+  L   MG A+PE+ + K  +   ++SE
Sbjct: 305 EGRGYVLRRILRRASRFARLLGQKKPFICQLVQVLADTMGDAFPEIRERKEFVASVIKSE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F +TLD GL     + + L K + + GD  F LYDT+G P D+   +   +GL  ID
Sbjct: 365 EESFIRTLDAGLERFAAISAELKKGDKIPGDKVFLLYDTYGFPPDLTGILAEEKGL-LID 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              + + + EQ+ RARA+     +    + W    E   +T F+GY+L      +     
Sbjct: 424 EEGYEKCMNEQKERARANMKQGINTMGTEGWTQYSE--ASTNFVGYELSACETKVVR--- 478

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                                 ++ + V          +V + +PFYAE GGQ+GD G  
Sbjct: 479 ---------------------WREDKGVLS--------IVLETSPFYAEMGGQVGDKGTL 509

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATH 591
           +   + +Q+ D   K     +    V +G           + T+D   R  +  NHSATH
Sbjct: 510 VSADLEIQVFDT-VKVNDTALCRGKVVKGEANEKTMGAVFMATVDNDRRADIRKNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG+HV Q GS ++ + LRFD +H   +T+ E++ +ED VN  I + LPV T
Sbjct: 569 LLQAALREVLGTHVQQQGSFVSNELLRFDFSHFNAMTAEEIQKVEDIVNAKIMECLPVHT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ ++A ASGA AL G KY D+VRVV +    G   S  LCGG HV +TG I ++ IV
Sbjct: 629 DVMDVDEAKASGAMALFGEKYGDKVRVVKMGD-AGVEFSRELCGGLHVQNTGNIGMVKIV 687

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SESS+ AG+RRIEA++G+ A S L    + L +L   L+     V+ R+++ + + + L+
Sbjct: 688 SESSVSAGVRRIEAVSGRGALSLLRAGTQILNALREQLRCKDAEVLDRIQQTFAKTQNLE 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNF----MSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                 KL+L     +      +N     +      +  ++ K+++D +Q K+    + +
Sbjct: 748 KSLQFVKLELATLAAAELLNGGINVMGVNLFVRELSLPDEKYKNLLDGVQNKLDVDSVAV 807

Query: 828 VGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +        S+ ++V +++      A D+ R  AK    G GGGRP  AQ+G     K  
Sbjct: 808 IANKDNGSGSIAVMVGKNVQAKGIKAGDIVRDLAKACN-GKGGGRPDRAQAGTREPEKIA 866

Query: 887 QAIAGVASFLK 897
           +AIA   ++++
Sbjct: 867 EAIANANNWIR 877


>gi|229013606|ref|ZP_04170737.1| Alanyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|228747665|gb|EEL97537.1| Alanyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 880

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY       
Sbjct: 414 AGMT-VDQAGFENEMEKQRERARAARQDVDSMQVQGGV--LGEVKVASEFVGY------- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    S V A+V+ GE  +   + ++ +++ D TPFYAE+GGQ
Sbjct: 464 ----------------GTVATESNVVALVKNGEYTDSLQADEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  E ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKALIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVAISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGG GGRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGG-GGRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|302561723|ref|ZP_07314065.1| alanyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302479341|gb|EFL42434.1| alanyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 890

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/921 (36%), Positives = 509/921 (55%), Gaps = 62/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSSQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLDAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G         +  +  RY+EIWNLVFMQ+E+       + +    LP  +IDTG+GL
Sbjct: 176 YDRGPEFGAEGGPAVNDE-RYVEIWNLVFMQYERGEGTGKDDFEILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I  + ++TG++Y   +   V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVIARATELTGVQYGDAHASDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELVTDRERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+  F KTL  G  +LD  +  +      +L GD AF L+DT G P+D+  ++  
Sbjct: 355 KVALAEENAFLKTLKAGTNILDTAITDTKSAGSAVLPGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR +A+A +L   +G  +   +  + ++ GAT FIGY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQREKAKADALSKKTGHADLGAYREIADRAGATDFIGYTATEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTVVGILVDGVSSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG    D    ++I D QK   G++VH  +V+ G +        +ID + R  ++
Sbjct: 511 GQIGDTGRIRADNGAVIEIRDCQKPVPGVYVHKGVVQVGEITVGARAHASIDGRRRTAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVRADVMGIDEARKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   LK     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVNQLTELLKGRSEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQK 818
            + +  +    K + +  ++  +       DV  ++     +       +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGVAVVTGQVPDGTTPDDLRKLVLDVRG 805

Query: 819 KIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G  +++ +      K   +I   +   +R   A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIQGGRAVVVALFTVNNGKPLTVIATNDAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG N     +A+  V   +
Sbjct: 865 QGGGQNPAAVGEAVDAVERLV 885


>gi|172036637|ref|YP_001803138.1| alanyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|205830042|sp|B1WYQ5|SYA_CYAA5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|171698091|gb|ACB51072.1| alanyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 879

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/906 (36%), Positives = 503/906 (55%), Gaps = 48/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+F+ ++ H++LPS+SL+P  DPT++ T +GM+PFK IF GQ++P +   T
Sbjct: 9   TGNQIRDRFLQFYAQHNHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKQPDFPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK + L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVYRLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V+++D+EAFKLW+++ G+   +I R+   DNFW    TGPCGPCSE+++D    
Sbjct: 124 ENIVVSVFEKDDEAFKLWEEMIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFM++ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GEDNIDLEDDSRFIEFYNLVFMEYNRDAEGNLAPLQNKNIDTGMGLERMAQILQKVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  +  + Y+        + +VI DH+RS   +IADGI  +N  RGY
Sbjct: 243 NYETDLIFPIIETAANIANIDYQKATEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +         +AYP++ + +  I+  L  E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGIEGQFIKQVAETAIELSENAYPQVRERESFIKGELEREETAFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RG  LL  ++        ++G  AF LYDT+G PL++ Q+I     L       F 
Sbjct: 363 KTLERGEKLLAEIIEKTETQGQISGVDAFTLYDTYGFPLELTQEIAEESNLTVNIEE-FE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +Q+ R++A    +   T +     L E    T F+GY  L+               
Sbjct: 422 AEMRQQQERSKAAHETIDL-TVQGSLDKLAEHIHPTAFLGYTDLQ--------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   +++ V+A++ QG+ V+ A +G +V++V DQTPFY E+GGQ+GD G   G+ +
Sbjct: 466 --------LTAKVEAVLIQGKTVDTAEAGSEVQIVLDQTPFYGESGGQIGDRGFLTGENL 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ DV +K  GIFVH   VERG +     +  TID   RRQ+  NH+ATHLL  AL  
Sbjct: 518 VIRVEDV-QKESGIFVHFGRVERGSVSVNDQVTATIDRACRRQVQANHTATHLLQAALKK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   +SQ GS +  D LRFD    + +TS EL+ IED +N  IA+       +M  E A
Sbjct: 577 VVDKSISQAGSLVAFDRLRFDFNCPRAVTSEELQEIEDLINTWIAEAHETEIAVMPIETA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRV+ V        S  LCGGTHV +T EI L  I+SES I +G
Sbjct: 637 KEKGAIAMFGEKYGSEVRVIDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGISSG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+ G     +L  ++  +K L    K+    +  R+  +  E +  Q      K 
Sbjct: 692 VRRIEAVAGPAVLEYLKVRETVVKDLCDRFKIKPEEISDRITTLQSELKTTQKELEAVKQ 751

Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            L V            I +   +   + E+D+K L++  + LQ+K+  G ++L  I  E 
Sbjct: 752 DLAVAKSDQLLTEAESIGEFKLLVSDMGEMDAKALQTAAERLQQKLGEGAVILGSIPSEG 811

Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   ++ +    +  A       AK+ GGGG GGRP++AQ+GG   +K  +A+   
Sbjct: 812 KVSLVAAFSKKVNQEKQLQAGKFIGQIAKICGGGG-GGRPNLAQAGGREPSKLSEALLTA 870

Query: 893 ASFLKK 898
              L +
Sbjct: 871 KEQLTE 876


>gi|254829737|ref|ZP_05234392.1| alanyl-tRNA synthetase [Listeria monocytogenes 10403S]
          Length = 879

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTYFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++++ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR+RARA    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDRVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELRTALDYVSTWVKE 876


>gi|161509845|ref|YP_001575504.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848647|ref|ZP_06789393.1| alanyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|304380785|ref|ZP_07363452.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|205830218|sp|A8Z4F6|SYA_STAAT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160368654|gb|ABX29625.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|269941104|emb|CBI49490.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|294824673|gb|EFG41096.1| alanyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|302751447|gb|ADL65624.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340661|gb|EFM06594.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|320140495|gb|EFW32349.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144034|gb|EFW35803.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314293|gb|AEB88706.1| Alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728452|gb|EGG64889.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 877

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/915 (37%), Positives = 507/915 (55%), Gaps = 58/915 (6%)

Query: 1   MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M      S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P 
Sbjct: 1   MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
              +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  
Sbjct: 61  KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSD 116

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EI
Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173

Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           F+D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLE
Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           RMA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG
Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+ 
Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD       
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD------- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+
Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHS
Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + 
Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L 
Sbjct: 628 VNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767
            IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E 
Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEE 742

Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q 
Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG   
Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860

Query: 883 NKADQAIAGVASFLK 897
               ++++ +  ++K
Sbjct: 861 ENISKSLSFIKDYIK 875


>gi|323439035|gb|EGA96767.1| alanyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323442822|gb|EGB00447.1| alanyl-tRNA synthetase [Staphylococcus aureus O46]
          Length = 877

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/915 (37%), Positives = 507/915 (55%), Gaps = 58/915 (6%)

Query: 1   MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M      S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P 
Sbjct: 1   MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
              +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  
Sbjct: 61  KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSD 116

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EI
Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173

Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           F+D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLE
Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           RMA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG
Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+ 
Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKVTTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD       
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD------- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+
Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHS
Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + 
Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L 
Sbjct: 628 VNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767
            IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E 
Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEE 742

Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q 
Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG   
Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860

Query: 883 NKADQAIAGVASFLK 897
               ++++ +  ++K
Sbjct: 861 ENISKSLSFIKDYIK 875


>gi|282916887|ref|ZP_06324645.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283770692|ref|ZP_06343584.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|282319374|gb|EFB49726.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283460839|gb|EFC07929.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
          Length = 876

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKVTTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD        
Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSA
Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGLVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q  
Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              ++++ +  ++K
Sbjct: 861 NISKSLSFIKDYIK 874


>gi|283470895|emb|CAQ50106.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398]
          Length = 877

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/915 (37%), Positives = 507/915 (55%), Gaps = 58/915 (6%)

Query: 1   MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M      S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P 
Sbjct: 1   MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
              +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  
Sbjct: 61  KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSE 116

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EI
Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173

Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           F+D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLE
Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           RMA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG
Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+ 
Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD       
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD------- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+
Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHS
Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + 
Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L 
Sbjct: 628 VNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767
            IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E 
Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEE 742

Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q 
Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG   
Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860

Query: 883 NKADQAIAGVASFLK 897
               ++++ +  ++K
Sbjct: 861 ENISKSLSFIKDYIK 875


>gi|57650500|ref|YP_186513.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87161149|ref|YP_494270.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195427|ref|YP_500231.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221731|ref|YP_001332553.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|221141112|ref|ZP_03565605.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258450555|ref|ZP_05698617.1| alanyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|284024675|ref|ZP_06379073.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|71153554|sp|Q5HFE4|SYA_STAAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122539371|sp|Q2FXV9|SYA_STAA8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123485547|sp|Q2FGA8|SYA_STAA3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830217|sp|A6QHF9|SYA_STAAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57284686|gb|AAW36780.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87127123|gb|ABD21637.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202985|gb|ABD30795.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150374531|dbj|BAF67791.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|257861713|gb|EEV84512.1| alanyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|315198685|gb|EFU29013.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 876

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD        
Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSA
Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q  
Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              ++++ +  ++K
Sbjct: 861 NISKSLSFIKDYIK 874


>gi|294501349|ref|YP_003565049.1| alanyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294351286|gb|ADE71615.1| alanyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 877

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/915 (39%), Positives = 522/915 (57%), Gaps = 58/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+FF++ GH++ PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTSAQVRQMYLDFFKEKGHDVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AIQ AW+ LT  K
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIQWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +L +TV+ ED+EAFK+W +  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDADKLSVTVHPEDKEAFKIWNEKMGVPKERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE     L         E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDLNDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q+   N+D DLF  +I+A+E ++G KY  N+      +VI DH+R+ +F + DG 
Sbjct: 234 MVSVIQDVQTNFDTDLFMPIIEATENISGAKYRTNDEQDTAFKVIADHIRTVTFAVGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+ +    I+  
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKKLNINRPFMYELVPVVGEIMVDFYPEVKEKTDFIQRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+        + + G+  F+LYDT+G P+++ ++     
Sbjct: 354 VKNEEERFHETLNDGLAILATVIKKEKAQNSDTVQGEDVFRLYDTYGFPVELTEEYAEDE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  ID   F + +E QR RARA      S   +     L E   A++F+GYD       
Sbjct: 414 NMK-IDHAGFEREMEAQRERARAARQDSSSMQVQGGV--LGEVTVASEFVGYD------- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                            N V ++V+AI+  GE+V+ A +G + +V+   TPFYAE+GGQ+
Sbjct: 464 ----------------KNEVETVVEAIIVDGELVDRAEAGTEAQVILSHTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G         ++ DVQK   G  V    V  G L        T+D +NR  +  NH+
Sbjct: 508 ADQGTIQSAAGTAEVKDVQKAPNGQNVQTVAVTNGELVKGEIYTATLDEENRSAIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG+HV+Q GS +T D LRFD +H   +T  EL+ IE  VN+ I  ++ 
Sbjct: 568 ATHLLHQALKDTLGTHVNQAGSLVTADRLRFDFSHFGQVTQEELEKIEQIVNEKIWDSIS 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VQIENKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSVIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   LK  A+ +K +  ++VGRVE + EE R
Sbjct: 683 KIVSESGIGAGTRRIEAVTGKAAYQLMNDQVGLLKEAAAKVKSNPRDLVGRVEGLLEEIR 742

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            LQ  +     +L   +          I  VN ++  ++  D   L++++D L++K++S 
Sbjct: 743 NLQRENDSLSTKLGNIEAGNLVDRVQNINGVNVLAAKVNATDMNNLRAMVDDLKQKLESA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L     E K +++  VT+DL+ +  +A  L +  A + GGGG GGRP MAQ+GG + 
Sbjct: 803 VIVLASPQGE-KVNIIAGVTKDLIAKGHHAGKLVKEVATICGGGG-GGRPDMAQAGGKDA 860

Query: 883 NKADQAIAGVASFLK 897
           ++ ++A+  V  ++K
Sbjct: 861 SQIEKALGTVEEWVK 875


>gi|312793514|ref|YP_004026437.1| alanyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180654|gb|ADQ40824.1| alanyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 883

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/909 (37%), Positives = 521/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 178 EKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VT  +Y  +    V+ RVI DH+R + F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  ILNG++AF++YDT+G PLD+ ++I   +G+  +D 
Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKEIILNGEIAFRMYDTYGFPLDLTKEIAAEKGII-VDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   + E    T F+GYD L            
Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLEQD--------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I    E            V+ D+TPFYAE+GGQ+ D G   
Sbjct: 467 --------------AKILKIFLDNEETAYVKEEDVCFVILDKTPFYAESGGQVADKGILE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K  +G  +H   V +G +    S+V  ++ + R     NH+ATHLLH 
Sbjct: 513 GEGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVNEELRLATMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS +TPD LRFD  H +P++  ++  IE  VN++I Q +PV   + +
Sbjct: 573 ALRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSALKMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +A   ++   + LK L S +K S    ++ ++E++    + L+   
Sbjct: 688 VAAGVRRIEAITGNKAYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENTIKALENEV 747

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   +LS          +   + +     D   +K + D ++++  S  I+L  
Sbjct: 748 EKYKLLVVENELSSLFGKAVDYGEFKLIVNRKETDDMDYVKLLTDKIKER-DSKAIVLNI 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I +  K ++L+  +++ + +  +   + +    VL GG GGGRP  AQ GG + +K D A
Sbjct: 807 IQQGSKVTILMSCSKEAVKKGVDCGKVVKEVCSVL-GGKGGGRPDFAQGGGNDISKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 LQTAENILK 874


>gi|282908937|ref|ZP_06316755.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911255|ref|ZP_06319057.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|295428195|ref|ZP_06820827.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297590838|ref|ZP_06949476.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|282324950|gb|EFB55260.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327201|gb|EFB57496.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|295128553|gb|EFG58187.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297575724|gb|EFH94440.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437914|gb|ADQ76985.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 877

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/915 (37%), Positives = 507/915 (55%), Gaps = 58/915 (6%)

Query: 1   MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M      S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P 
Sbjct: 1   MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
              +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  
Sbjct: 61  KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSD 116

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EI
Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173

Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           F+D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLE
Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           RMA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG
Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+ 
Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD       
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD------- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+
Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHS
Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + 
Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L 
Sbjct: 628 VNIQEMDIVSAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767
            IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   N VV ++ ++ +E 
Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDNQVVDKLTQLQDEE 742

Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q 
Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG   
Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860

Query: 883 NKADQAIAGVASFLK 897
               ++++ +  ++K
Sbjct: 861 ENISKSLSFIKDYIK 875


>gi|49483863|ref|YP_041087.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425743|ref|ZP_05602167.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428403|ref|ZP_05604801.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431041|ref|ZP_05607420.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433727|ref|ZP_05610085.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436642|ref|ZP_05612686.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282904199|ref|ZP_06312087.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282906025|ref|ZP_06313880.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282914423|ref|ZP_06322209.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282919393|ref|ZP_06327128.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282924718|ref|ZP_06332386.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|283958379|ref|ZP_06375830.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503498|ref|ZP_06667345.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510515|ref|ZP_06669221.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293531055|ref|ZP_06671737.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|56749413|sp|Q6GG85|SYA_STAAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49241992|emb|CAG40689.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271437|gb|EEV03583.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275244|gb|EEV06731.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278244|gb|EEV08886.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281820|gb|EEV11957.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283993|gb|EEV14116.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282313553|gb|EFB43948.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282317203|gb|EFB47577.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282321604|gb|EFB51929.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282331317|gb|EFB60831.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595817|gb|EFC00781.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|283790528|gb|EFC29345.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920323|gb|EFD97389.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095164|gb|EFE25429.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466879|gb|EFF09399.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|315195518|gb|EFU25905.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 876

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD        
Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSA
Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMDIVSAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   N VV ++ ++ +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDNQVVDKLTQLQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q  
Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              ++++ +  ++K
Sbjct: 861 NISKSLSFIKDYIK 874


>gi|258424044|ref|ZP_05686926.1| alanyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257845665|gb|EEV69697.1| alanyl-tRNA synthetase [Staphylococcus aureus A9635]
          Length = 877

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/915 (37%), Positives = 506/915 (55%), Gaps = 58/915 (6%)

Query: 1   MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M      S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P 
Sbjct: 1   MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
              +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  
Sbjct: 61  KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSD 116

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EI
Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173

Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           F+D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLE
Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           RMA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG
Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+ 
Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD       
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD------- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+
Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHS
Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + 
Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L 
Sbjct: 628 VNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV     VV ++ ++ +E 
Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSNDQVVDKLTQLQDEE 742

Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q 
Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG   
Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860

Query: 883 NKADQAIAGVASFLK 897
               ++++ +  ++K
Sbjct: 861 ENISKSLSFIKDYIK 875


>gi|21283297|ref|NP_646385.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49486451|ref|YP_043672.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297207662|ref|ZP_06924097.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300911744|ref|ZP_07129187.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|33301697|sp|Q8NW87|SYA_STAAW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56749384|sp|Q6G8V1|SYA_STAAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21204737|dbj|BAB95433.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49244894|emb|CAG43355.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|296887679|gb|EFH26577.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300885990|gb|EFK81192.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 876

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD        
Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSA
Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q  
Sbjct: 743 ALLKQLEQRDKEITSLKMGNIENQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              ++++ +  ++K
Sbjct: 861 NISKSLSFIKDYIK 874


>gi|298694898|gb|ADI98120.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133]
          Length = 876

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKETTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD        
Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSA
Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q  
Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              ++++ +  ++K
Sbjct: 861 NISKSLSFIKDYIK 874


>gi|302333292|gb|ADL23485.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 876

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/914 (36%), Positives = 508/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDPSEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++         ++G  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKVTTNEISGKDAFKLYDTYGFPIELTEEIAVQAG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD        
Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITFASTFVGYD-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSA
Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q  
Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              ++++ +  ++K
Sbjct: 861 NISKSLSFIKDYIK 874


>gi|262051273|ref|ZP_06023497.1| alanyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|282920165|ref|ZP_06327890.1| alanyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|259160910|gb|EEW45930.1| alanyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|282594513|gb|EFB99498.1| alanyl-tRNA synthetase [Staphylococcus aureus A9765]
          Length = 876

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD        
Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSA
Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q  
Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDRVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              ++++ +  ++K
Sbjct: 861 NISKSLSFIKDYIK 874


>gi|172058083|ref|YP_001814543.1| alanyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|205830090|sp|B1YJE5|SYA_EXIS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|171990604|gb|ACB61526.1| alanyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 880

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/911 (38%), Positives = 520/911 (57%), Gaps = 57/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FFQ  GH + PS+SL+P  DPTL++ NSG+   K  F G+  P    + 
Sbjct: 8   TGAQIRQMYLDFFQSKGHAIEPSASLVPIEDPTLLWINSGVATLKKYFDGRVIPQNPRIV 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E AI+  W+LLT  + + L
Sbjct: 68  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSVGDYFREDAIKWGWELLTSDEWYGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +T++ ED+ A ++W ++ G+ A++II +   DNFW + E GP GP +EIFFD+G
Sbjct: 124 DPDRLSVTIHPEDDAARQIWLEL-GVPAERIIPL--EDNFWEIGE-GPSGPNTEIFFDRG 179

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWN+VF Q+          LP+ +IDTGMGLERMA+V
Sbjct: 180 PAFGDDPNDSELYPGGENERYLEIWNIVFSQYNHDGHGNYTELPRKNIDTGMGLERMASV 239

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N+D DLF  +I  +E+++G +Y  +    V  +VI DH+R+ +F I DG LP+N
Sbjct: 240 MQDVPTNFDTDLFMPIIHKTEEISGKRYREDTKLDVAFKVIADHIRTVAFAIGDGALPSN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA++LG   P M  L+  + + M   YP++ +    I+  +++E
Sbjct: 300 EGRGYVLRRLLRRAVRYAKMLGIERPFMYELVDTVGSVMVDFYPQVPEKADFIKRVIKNE 359

Query: 355 DERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  GL +L+ V   +    + I++G+ AF+LYDT+G PL++            
Sbjct: 360 EERFHETLHDGLAILNTVAQAAKNNGEHIISGEDAFRLYDTYGFPLELT-VEYAEDHQMS 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A++EQR RARA     GS   +     L      +QF+GY  L         
Sbjct: 419 VDEEGFKRAMDEQRKRARAAREDGGSMQQQSEV--LATLTVPSQFVGYTDLEAD------ 470

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + + A++  GE V E  +G++ +++ D TPFYAE+GG++ D+G
Sbjct: 471 -----------------AKIIALLHDGERVTEVAAGEEAQLLLDVTPFYAESGGEVADSG 513

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G    L + DVQK   G  +H  +V  GI   + S+   ++  +R+ ++ NH+ATHL
Sbjct: 514 TITGPDFVLDVKDVQKAPNGQNLHTVVVRTGIALADASVHAAVEASSRQAITKNHTATHL 573

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG+HV+Q GS ++ + LRFD +H   +T+ EL +IE +VN  I  +L V   
Sbjct: 574 LHKALKDTLGTHVNQAGSLVSAERLRFDFSHFGAVTAEELATIEQDVNQAIWASLAVEIE 633

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            MN  DA A GA AL G KY + VRVVS      G +S  LCGG HV +T EI L  IVS
Sbjct: 634 EMNIADAKAKGAMALFGEKYGETVRVVS-----AGTYSIELCGGIHVRNTAEIGLFKIVS 688

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG  A   + G  + L+  A  LK     V GR+E +  + R+ + 
Sbjct: 689 ESGIGAGTRRIEAVTGAGAYHVMNGHLQTLEQAARVLKTKTTEVPGRIEALQVQLRETER 748

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            H   + +L   + +       +I  V  ++  +   D   L+ +MD L+  + S II+L
Sbjct: 749 AHESLQAKLANIEAASLKDDVEQINGVQVLAKQVDVSDMDALRGMMDELKSSLGSAIIVL 808

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                + K +++  V++DL+D  ++A  L +  A   GGGG GGRP MAQ+GG +  K +
Sbjct: 809 GSAQGD-KVNLVASVSKDLIDQGYHAGKLIKEVATRCGGGG-GGRPDMAQAGGKDPAKLN 866

Query: 887 QAIAGVASFLK 897
           +A+A  + +++
Sbjct: 867 EALAFTSHYVQ 877


>gi|254828262|ref|ZP_05232949.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258600650|gb|EEW13975.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
          Length = 879

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++++ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR+RARA    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNT 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELGTALDYVSTWVKE 876


>gi|238651102|ref|YP_002916960.1| alanyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
 gi|238625200|gb|ACR47906.1| alanyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
          Length = 878

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/901 (45%), Positives = 557/901 (61%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHIPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKAEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAENFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R    +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRD-IAVDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T ++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKERARKSWLGSGESKTNQLWFDIKEQHGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAKCKIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDA+
Sbjct: 581 LGKHVIQKGSLVAPTYLRFDISHSKTVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGATALFGEKYDSEVRVVKM-----GETSLELCSGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA  G+   + +  +D  LKS+ S  K ++  ++ +V  I E  ++++    K    
Sbjct: 696 RRIEAACGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|160933050|ref|ZP_02080439.1| hypothetical protein CLOLEP_01892 [Clostridium leptum DSM 753]
 gi|156868124|gb|EDO61496.1| hypothetical protein CLOLEP_01892 [Clostridium leptum DSM 753]
          Length = 877

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/911 (35%), Positives = 501/911 (54%), Gaps = 51/911 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    ++ +R  +L+FF+  GH  LPS SL+P  D +L+  NSGM P K  FTG+  P  
Sbjct: 1   MKWTGLNELREKYLQFFESKGHLRLPSFSLVPNGDKSLLLINSGMAPMKKYFTGEVTPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             VTT QKC+R      D++ VG T RH T+FEMLGNFSFG YFK  A   AW+  TK  
Sbjct: 61  NRVTTCQKCIRT----PDIERVGITARHGTYFEMLGNFSFGDYFKHEATAWAWEFCTKVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L   R+++++Y +D+EAF +W K  G+   +I+R+   DNFW    TGPCGPCSE++FD
Sbjct: 117 ELPVERIWVSIYQDDDEAFDIWTKEVGVDPSRIVRLGKEDNFWEHG-TGPCGPCSELYFD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      + +RY+E WNLVF QF+   +     L   +IDTGMGLER+A +
Sbjct: 176 RGEEYGCGSPTCGVGCDCDRYVEFWNLVFSQFDNDGQGNYTPLEHKNIDTGMGLERLACI 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   N + +D  +++++   ++ G++Y  +    ++ RV+ DH+RS++F+I DG++P+N
Sbjct: 236 MQGVDNLFLVDTVQNIMKHISKIAGVEYGADPKTDISLRVVTDHIRSTTFMIGDGVMPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG   P +  +   +  E  SAYPEL++ +  I++ +  E
Sbjct: 296 EGRGYVLRRLLRRAARHGRLLGIRRPFLAEVCDTVINENQSAYPELVEKRDFIKKLISVE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F +T+D+GL +L  ++ +  + +IL+G  AF+L DT+G PLD+ ++I+  +G+  +D
Sbjct: 356 EENFDRTIDQGLQILGALIEN-SEKKILSGAEAFRLNDTYGFPLDLTKEIIAEKGMT-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + L EQR+RAR      G+         L +   AT+F GY  L+          
Sbjct: 414 ESEFQRLLSEQRTRARNARKNAGADAWLSESVDL-DGIPATEFTGYATLKD--------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + AI++ GE VE A     V VV D+TPFYAE+GGQ+GDTG  
Sbjct: 464 --------------TARILAILRDGERVESAEMNDDVVVVLDRTPFYAESGGQVGDTGFL 509

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D  K   G+F+HH  V    L     +   +D   R  +  NH+A HLL 
Sbjct: 510 TDGAGRFAVLDTTKHHSGVFLHHCHVVVEGLSVGSEVECVVDGIRRYNIMRNHTAAHLLQ 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q G  +    +RFD TH   +T  E   +E+ VND I   + V +  M
Sbjct: 570 AALRKVLGTHVEQAGQLVDGQRVRFDFTHFSALTKEETARVEEIVNDEILSAVQVTSTEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A   GA AL G KY D VRVV       G  S+  CGGTHV++T  + L  I+SES
Sbjct: 630 PIEEAKKLGAMALFGEKYGDIVRVVQ-----AGEFSTEFCGGTHVNNTARLGLFKIISES 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLI 773
           S+ +G+RRIE +TG+    H+    + ++  +S LK  +   +    E +  E ++L+  
Sbjct: 685 SVASGVRRIEGVTGRGVLQHMAEDAKTIQDASSALKLNNPAELPEACEHLLSEQKELRRE 744

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K   +L    +     S   +  V  ++   S   +  L+++ D +++   + + +  
Sbjct: 745 LEKANARLANWQVDGLFDSAEMVKGVKIITGSFSSTTADALRTMSDRVRENAPNSVAVFA 804

Query: 829 GISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            I  + KA +     ++      +A ++ R +AK + GG GGG+P  A +G  +  K D+
Sbjct: 805 AI-NDGKAVLSATAGKEAQQKGCHAGNIVRAAAK-VAGGNGGGKPDFAMAGAKDLTKIDE 862

Query: 888 AIAGVASFLKK 898
           A+A V + + +
Sbjct: 863 ALAAVNTIVSE 873


>gi|253732273|ref|ZP_04866438.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724062|gb|EES92791.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 877

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/915 (36%), Positives = 506/915 (55%), Gaps = 58/915 (6%)

Query: 1   MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M      S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P 
Sbjct: 1   MMKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
              +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  
Sbjct: 61  KPRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSD 116

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EI
Sbjct: 117 KWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEI 173

Query: 176 FFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           F+D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLE
Sbjct: 174 FYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           RMA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG
Sbjct: 234 RMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+ 
Sbjct: 294 ALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKR 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 VIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D+ +F   +++QR RAR       S   +     LK     + F+GYD       
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSVSTFVGYD------- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+
Sbjct: 464 ----------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHS
Sbjct: 508 ADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHS 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + 
Sbjct: 568 ATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGID 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L 
Sbjct: 628 VNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767
            IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E 
Sbjct: 683 KIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEE 742

Query: 768 RKLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q 
Sbjct: 743 KALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQD 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG   
Sbjct: 803 TIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQP 860

Query: 883 NKADQAIAGVASFLK 897
               ++++ +  ++K
Sbjct: 861 ENISKSLSFIKDYIK 875


>gi|126641224|ref|YP_001084208.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 837

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/872 (42%), Positives = 500/872 (57%), Gaps = 52/872 (5%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK+ F G EK  Y   TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDCFLGLEKRDYVRATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157
           K  A++ AW+ LT  +   L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N   
Sbjct: 61  KRDALKFAWEFLTSEQWLALPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGE 120

Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQN 212
               DNFW+M +TGPCGPCSEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +  
Sbjct: 121 KYASDNFWAMGDTGPCGPCSEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTA 180

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LP  S+DTGMGLER++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + 
Sbjct: 181 DGVLHPLPAPSVDTGMGLERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEG--QPSL 238

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH RS  FLIADG+ P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   
Sbjct: 239 RVVADHARSCCFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEV 298

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MG AYPEL   + +IE TL  E+E+F KTL++GL LL+G L+ L  D+ + G   FKLYD
Sbjct: 299 MGQAYPELEARREVIEATLIREEEQFAKTLEQGLKLLEGELAQLK-DKTIPGATVFKLYD 357

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P D+  DI   RG   ID   F   +  QR RAR       +G     + ++ +  
Sbjct: 358 TYGFPTDLTADIARERGFI-IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVE 410

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
           G TQF GY    G                          + AI + G  V+E   G +  
Sbjct: 411 GETQFDGYTNTTG-----------------------QGQIVAIYKDGVQVDEVSEGDEAL 447

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V +QTPFYAE+GGQ+GDTG    +    ++ D +K     FVH  IV  G L+T  ++ 
Sbjct: 448 IVLNQTPFYAESGGQIGDTGIFKNETGIFEVQDTKKSGG-AFVHQGIVTVGNLKTSQNVE 506

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +    R   + NHSATHLLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L
Sbjct: 507 AIVKADIREATARNHSATHLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQL 566

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSS 691
           + +E  VN  I  N  V T +++ E A A GA  L G KY D VRV+S+    D    S 
Sbjct: 567 QQVERLVNAEIIANTAVTTELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSI 626

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGG HV  TG+I L  I SE  + AG+RRIEA+TG +A   +   D  ++ + S LK 
Sbjct: 627 ELCGGIHVKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKA 686

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDS 806
            +   V RV+   E    LQ    +   +L     +        IA    +   +  VD+
Sbjct: 687 QKDQTVERVQANVELVSALQKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDA 746

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           K L+++ D+++ K+++ +I+L G+  + K S+L  V         A D+ +  A  L GG
Sbjct: 747 KALRNLHDSVKSKLENAVIVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GG 804

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            GGG+P +AQ G P   K  Q +A + ++L++
Sbjct: 805 KGGGKPDLAQGGAPLNEKFGQVMAALPAWLEQ 836


>gi|153953949|ref|YP_001394714.1| alanyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|219854563|ref|YP_002471685.1| hypothetical protein CKR_1220 [Clostridium kluyveri NBRC 12016]
 gi|205830035|sp|A5N7T5|SYA_CLOK5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146346830|gb|EDK33366.1| AlaS [Clostridium kluyveri DSM 555]
 gi|219568287|dbj|BAH06271.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 879

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/907 (36%), Positives = 524/907 (57%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+K  H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V T
Sbjct: 6   LNQIREMYLSFFEKKAHLRLPSFSLVPQNDKSLLLINAGMTPLKPYFTGLKVPPSKRVAT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKKEAIPWAWEFITEVLKLPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY+T+Y +D+EA+ +W K + +   KI R+   DNFW     GPCGPCSEI++D+ +  
Sbjct: 122 RLYVTIYLDDDEAYDIWVKSTDVDPSKIFRLGKEDNFWEHG-VGPCGPCSEIYYDRAQEK 180

Query: 184 PG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                    + + ++ +E WNLVF QF++        L   +IDTGMGLERMAT++Q + 
Sbjct: 181 INSVEEFVEAADNDKIVEFWNLVFTQFDKDENGNYNRLSNPNIDTGMGLERMATIMQGEN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +++D    +++    ++G KY    NN ++ R+I DH+RS +F+I+DGILP+NEGRGY
Sbjct: 241 SIFEVDTINAILKEVCNISGTKYNEHKNNDISIRIITDHIRSITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + + LG  +  +  L   +      +YP+L   K  I++ +R E+ERF 
Sbjct: 301 VLRRLLRRAAKHGKSLGIDDRFLYKLSNVVIDNSCESYPKLKDRKEYIKKVIRLEEERFD 360

Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D G+ +L+  +  L      +L G+ AFKLYDT+G P+++ ++IL  + + G+D+  
Sbjct: 361 ETIDSGMKILNEFIEELENSNSLLLEGEKAFKLYDTYGFPIELTEEILQEKNM-GVDLEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN+ ++ Q+  AR+          E    +    Y  T F GY+ L              
Sbjct: 420 FNKKMQNQKEMARSARTETNYMGAEDTVLNKIPLYIDTVFEGYNSLES------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S VK ++++GE V     G+K  ++   TPFYAE GGQ+GD G    +
Sbjct: 468 -----------TSKVKLMIKEGEFVSLLSQGEKGVILVANTPFYAEMGGQVGDKGIIYNE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               +I D +    G  +H   V  G +  E +++L +D   R  +  NH++THLL  AL
Sbjct: 517 NFEGKIIDCKNNVAGKILHFVEVISGSVSLEDTVLLKVDKNRRDDIRRNHTSTHLLGEAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q+GS +    LRFD  H + +   +L+ +E+ VN+ I +   V T +M+ E
Sbjct: 577 RRVLGEHVHQSGSYVDEHRLRFDFNHFESLNDKQLREVEELVNENIRKAKTVNTNLMSLE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  SGA A+  +KY+D VRVVS+     G  S  LCGGTHV ++GEI L  IVSE+ I 
Sbjct: 637 EAKKSGAVAIFDSKYSDEVRVVSI-----GDFSRELCGGTHVGNSGEIGLFKIVSEAGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+TG+ A  +L  + + LK +A+  K S+  +V +++  + E R+L+    + 
Sbjct: 692 AGIRRIEAVTGREAVEYLYSKSDMLKEIANKFKCSEKEIVHKLDLQFNELRELRKELEEF 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K++L              +  +N  + I+ +VD   L+ + D ++ K Q+ +++L G + 
Sbjct: 752 KIKLAGSAEESILNGVKIVKGINLFTGILKDVDGNALRELADKIRSKSQNAVVLL-GSNA 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K +++ + T+D +++  +   + +  A V GGGG GGRP MAQ+GG   +K ++AI  
Sbjct: 811 EGKVNLVAMATKDAVEKGVHCGKIIKEVAAVAGGGG-GGRPDMAQAGGKFPDKLEEAIGK 869

Query: 892 VASFLKK 898
            ++ ++K
Sbjct: 870 CSAIMEK 876


>gi|94676688|ref|YP_588660.1| alanyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|205829990|sp|Q1LTQ4|SYA_BAUCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94219838|gb|ABF13997.1| alanyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 884

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/911 (38%), Positives = 524/911 (57%), Gaps = 59/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL FF + GH+++ SSSL+  NDPTL+FTN+GM  FK++F G +K +YQ+ T
Sbjct: 5   STAELRQEFLNFFHQKGHKIVASSSLVSHNDPTLLFTNAGMNQFKDVFLGLDKRLYQSAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T Q+C+RAGGKHNDL+ VG T RHHTFFEMLGNFSFG YFK  AIQLAW+LLT  + F+L
Sbjct: 65  TAQRCIRAGGKHNDLEKVGYTARHHTFFEMLGNFSFGAYFKCEAIQLAWELLTGGQWFNL 124

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+E + +W K   +  ++I+RI  N       DNFW M + GPCGPCS
Sbjct: 125 PKDKLWVTVYATDDETYNIWAKQINIPRERIVRIGDNKGKAYASDNFWQMGDIGPCGPCS 184

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G  + G  PGS  E G+RYIEIWNLVF+QF +Q       L K S+DTGMGLER
Sbjct: 185 EIFFDHGNHLFGAPPGSQGEYGDRYIEIWNLVFIQFNRQMDGTLIPLQKPSVDTGMGLER 244

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDID+F  LI+A   VT       N  + +VI DH+RS +FL++DG++P
Sbjct: 245 IAAVLQHVNSNYDIDIFSQLIKAVADVTK----ATNTSSLQVIADHIRSCAFLVSDGVVP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           + +GRGYVLR I+RRA+ +  +LG  +     L+  L   MGS   +L Q + ++E+ LR
Sbjct: 301 SQDGRGYVLRHIIRRAIRHGYMLGARDAFFYKLVAPLIEVMGSTADQLKQQQNMVEQVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL +L+ VL+ L   + L+G+ AF LYDT+GLP+ +  DI   R +  
Sbjct: 361 TEEEQFSQTLERGLFMLEQVLTKLT-GDTLDGETAFSLYDTYGLPIYLTTDICRERNIK- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+E QR+RAR  S           + S+      T+F+GY  L+        
Sbjct: 419 VDENGFKSAMEVQRNRAREASRFSYK------YNSMLSINQYTRFLGYKHLKS------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V A+    + VE     +K  V+ D TPFY E+GGQ+GD+G
Sbjct: 466 ----------------QGKVTALYLNDQSVEVIYHSEKAIVILDYTPFYGESGGQIGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D +K    +  H  ++  G LR    +   ++   R ++S+NHSATHL
Sbjct: 510 KITAANGIFEVIDTKKYGNAL-GHLGMLNYGELRIGDQVTAKVNQLRRDRISVNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG HV Q GS +    LRFD +H + +   ++  +E  +N  I +NL + T 
Sbjct: 569 LQSALRQLLGKHVVQRGSLVHDQYLRFDFSHHQAMQVEQIHEVEKIINQQIRRNLIIKTD 628

Query: 653 IMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           +M  E A   GA ++L  +Y   +VRV+S+     G  S+ LC GTH S TG+I L +I 
Sbjct: 629 MMTLEAAQNQGAISVLDHQYESSQVRVLSI-----GDFSTELCCGTHASRTGDIGLFWIS 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I  GIRRIEAITG+ A  +L  Q   ++ ++   K    N+V +V  +    ++L+
Sbjct: 684 SESGIALGIRRIEAITGEFALKNLHQQSNLVQQISQLFKNDGSNLVEKVRGLQNHIKQLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             + + K +   +++        K+     +   +  ++ K ++ ++D ++ ++ S +I+
Sbjct: 744 SKYQQLKSKQVAQEIAVLSRKISKMHGTQVLVSKLENIEPKIMRHIVDEIKHQLGSVVII 803

Query: 827 LVGIS-KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  I+  + K +++  VT+DL +R  A D+ R   +   GG GGG   +A +G    N+ 
Sbjct: 804 LANINLVDGKVNLIAGVTDDLTNRIQASDIIRTLIQK-FGGRGGGSKKIAYAGSITTNEL 862

Query: 886 DQAIAGVASFL 896
              +  +   +
Sbjct: 863 STVLYYIEKIV 873


>gi|257055557|ref|YP_003133389.1| alanyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
 gi|256585429|gb|ACU96562.1| alanyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
          Length = 888

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/920 (36%), Positives = 516/920 (56%), Gaps = 61/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   FL++F+++GH  +PS+SLI  +DPTL+F N+GMV FK  F G+  P Y   
Sbjct: 1   METHEINKRFLDYFERHGHTKVPSASLI-LDDPTLLFVNAGMVQFKPYFLGEVPPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D+D VG+T RH+TFF+M GNFSFG YFK+ AI+LAW+ +T      
Sbjct: 60  TSVQKCVRTG----DIDEVGKTTRHNTFFQMAGNFSFGDYFKQGAIELAWEFITTSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L+  RL+ TVY+ D EA  LW+ ++GL +++I     +DN+W M   GPCGPCSEI+
Sbjct: 116 GLGLNPDRLWATVYEHDAEAAALWRDVAGLPSERIQFRGPDDNYWDMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFMQ  +      Q       LP+ +IDTGMG+
Sbjct: 176 YDRGPEY-GREGGPVVDEDRYLEIWNLVFMQEMRGELSPKQGHAPIGELPQKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+ +G +Y  +  + V  RVI DH RS   LIAD
Sbjct: 235 ERVAYLLQGVENVYETDLVRPVITKAEEFSGRRYGADHADDVRFRVIADHARSGVMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NE RGYVLRR++RR +   RLLG  EP++      +   M  +YPE+ +    I 
Sbjct: 295 GVTPGNEARGYVLRRLLRRIVRSVRLLGVHEPVLPEFAAVVRDAMAPSYPEIARDFDRIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+E F  TL  G  + D       +    IL+GD AF+L+DT+G P+D+  ++  
Sbjct: 355 DVMRAEEEAFLATLTSGSRIFDLAAQETKRAGGTILSGDKAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F   +E+QR RA+A +    +G  +  ++  L E++G T+F+GY  L+ 
Sbjct: 415 EQGLS-VDEEGFRTLMEQQRQRAKADAASRKTGHGDLSVYRKLLEEHGETEFLGYTDLQ- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  ++ V  ++  G+ V  A  G   E+V D+TPFYAE G
Sbjct: 473 ----------------------ATARVLGLLVDGKPVRSASEGSVAELVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ DTG  IG+G  L++ DVQ+   G+FVH   V  G +  +  L  ++D   R  ++ 
Sbjct: 511 GQIADTGVLIGEGAELKVLDVQRLVPGLFVHRVEVVAGEVGVDTQLTASVDGTRRASIAR 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHL+H A+    G+  +Q GS  TP  +RFD T  K ++   L  +E+ VND +  
Sbjct: 571 SHSATHLVHAAVRGAYGNRAAQAGSLNTPGRMRFDFTTPKSVSDDVLTEVEEEVNDYLQT 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           ++ V      ++ A+  GA AL G KY DRVRVV +     G +S  LCGGTHV   G++
Sbjct: 631 DVEVQAYTTTKDRALELGAIALFGEKYGDRVRVVDM-----GDYSRELCGGTHVERIGQL 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ +VS+SS+ +G+ R+EA+ G  A  H+  +   +  LAS LKV    V  R++++  
Sbjct: 686 GLVKLVSDSSVGSGVHRVEALVGTDALRHVRKEQLLVSQLASTLKVPADEVPSRIQDVLT 745

Query: 766 EYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819
             R  +    + +L+  +   S       +IA V+ ++  +  EVD+  L+ +   ++ +
Sbjct: 746 RLRNAEKEIEQLRLREVLNSASTLAERAREIAGVSVVAERLDQEVDAGALRKLTGEVRNR 805

Query: 820 IQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           + S  G++ L   S E K S ++  T +  D    A  L    A+++ GG GGG+P MAQ
Sbjct: 806 LGSRPGVVALFAPSGEGKVSFVVATTAEARDAGLAAGKLVPAFAELV-GGRGGGKPDMAQ 864

Query: 877 SGGPNGNKADQAIAGVASFL 896
            GG      +QAI  + + +
Sbjct: 865 GGGSRPEGVEQAIEALRAAV 884


>gi|15924608|ref|NP_372142.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927198|ref|NP_374731.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|148268099|ref|YP_001247042.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394167|ref|YP_001316842.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979936|ref|YP_001442195.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316601|ref|ZP_04839814.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006403|ref|ZP_05145004.2| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793693|ref|ZP_05642672.1| alanyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258411008|ref|ZP_05681288.1| alanyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258420190|ref|ZP_05683145.1| alanyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258438192|ref|ZP_05689476.1| alanyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443655|ref|ZP_05691994.1| alanyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258448776|ref|ZP_05696888.1| alanyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258453595|ref|ZP_05701573.1| alanyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|269203244|ref|YP_003282513.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893121|ref|ZP_06301355.1| alanyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282928252|ref|ZP_06335857.1| alanyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|295406740|ref|ZP_06816545.1| alanyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|296276721|ref|ZP_06859228.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297245678|ref|ZP_06929543.1| alanyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|54039649|sp|P67011|SYA_STAAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|54042024|sp|P67010|SYA_STAAM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830214|sp|A7X328|SYA_STAA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830215|sp|A6U287|SYA_STAA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830216|sp|A5ITE3|SYA_STAA9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13701416|dbj|BAB42710.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|14247389|dbj|BAB57780.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741168|gb|ABQ49466.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946619|gb|ABR52555.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156722071|dbj|BAF78488.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787665|gb|EEV26005.1| alanyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257840158|gb|EEV64622.1| alanyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257843901|gb|EEV68295.1| alanyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257848236|gb|EEV72227.1| alanyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257851061|gb|EEV75004.1| alanyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257858054|gb|EEV80943.1| alanyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257864326|gb|EEV87076.1| alanyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|262075534|gb|ACY11507.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282590059|gb|EFB95141.1| alanyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282764439|gb|EFC04565.1| alanyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|285817300|gb|ADC37787.1| Alanyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|294968487|gb|EFG44511.1| alanyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|297177329|gb|EFH36581.1| alanyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|312830005|emb|CBX34847.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315129899|gb|EFT85889.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727520|gb|EGG63976.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
          Length = 876

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/914 (36%), Positives = 508/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD        
Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSA
Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S +KV   + VV ++ ++ +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQLQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q  
Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              ++++ +  ++K
Sbjct: 861 NISKSLSFIKDYIK 874


>gi|224476716|ref|YP_002634322.1| alanyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421323|emb|CAL28137.1| putative alanyl-tRNA synthetase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 876

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/914 (37%), Positives = 510/914 (55%), Gaps = 57/914 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S IR  F+++F++ GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKQLKASEIRQNFIDYFKEQGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREIPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  +
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSDR 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ LW  + GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDTEAYDLWHDVIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGPEYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q    NY+ DLF  +I+  E+++G KY+ +    V  +VI DH+R+ +F I DG 
Sbjct: 234 MASIAQNVRTNYETDLFMPIIEDVEKISGKKYQEDADQDVAFKVIADHIRTIAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+ A+   M   YPE+ Q    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLDINEPFMYQLVDAVADIMEPYYPEVKQKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++        ++NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEEGLAILNDMIKDAKAGGNVINGKDAFKLYDTYGFPIELTEEIADNEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK     + F GYD++      
Sbjct: 414 LT-VDMKTFEAEMQKQRDRARQARQKSESMQIQSEV--LKNITTQSTFTGYDVMDQ---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              ++ +  I+  GE VE+A +G  V  V + TPFYA +GGQ+ 
Sbjct: 467 -------------------NTKITDIIVNGERVEKADAGDTVFFVLEATPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    +   +++T+V     G  +H   V+ G +     +  ++++ +RR +  NHSA
Sbjct: 508 DQGTVSNENFEIEVTEVTNAPNGQNLHKGAVQFGQVAEGAEVEASVNHADRRDIKKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  D LRFD +H  P+T  EL+ +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVEGDRLRFDFSHFGPVTEEELEQVERRVNEEIWKGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M  E+A ASGA AL G KY D VRVV +        S  LCGG HV +T EI L  
Sbjct: 628 TIKEMPIEEAKASGAMALFGEKYGDVVRVVDMSP-----FSIELCGGIHVQNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L     K K++   +K  Q   V  +V ++ +  +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEEIQNKFKAVKHQVKAKQDEQVAEKVSQLIDNEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L     +R      L++   D    +I  +  ++  +   ++K L+  MD  + K+Q  
Sbjct: 743 QLHKQLEQRNQEITALKMGSIDDQIEEINGLKVLALQVDAENAKALRQTMDDFKSKLQDS 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L     + K +++  V +   D+  A DL +  A V+ GG GGGRP MAQ GG   +
Sbjct: 803 VIILASDVGD-KVALVATVPKSETDKVKAGDLIKNMAPVV-GGKGGGRPDMAQGGGSEPS 860

Query: 884 KADQAIAGVASFLK 897
           K  +A+  + +++K
Sbjct: 861 KITEALQFIKNYIK 874


>gi|255026679|ref|ZP_05298665.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 879

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 513/916 (56%), Gaps = 58/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PXMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIIFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++++ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR+RARA    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNP 860

Query: 883 NKADQAIAGVASFLKK 898
            +   A+  V++++K+
Sbjct: 861 AELRTALDYVSTWVKE 876


>gi|299140238|ref|ZP_07033404.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298597777|gb|EFI53949.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 895

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/931 (37%), Positives = 516/931 (55%), Gaps = 78/931 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL FF++ GH  + SSSL+P NDPTL+FTN+GM  FK++F G E   Y    
Sbjct: 5   SGNQIREEFLRFFEEKGHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGAETRDYSRAA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT    F +
Sbjct: 65  SSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKRDAIKYAWELLTSEDWFGI 124

Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           D+ +LY+T+++       D EA + W + +G+  D+I  +   DNFW+M +TGPCGPCSE
Sbjct: 125 DKSKLYVTIFEGDAAVPRDNEAEQFWLE-AGVPKDRIYELGAKDNFWAMGDTGPCGPCSE 183

Query: 175 IFFDQG--ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           I++D G      G      E+ +RY+EIWNLVFMQF++ +      LPK SIDTGMGLER
Sbjct: 184 IYYDLGLAASETGEDKPFGEDDQRYMEIWNLVFMQFDRSSDGVLTPLPKPSIDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVNHRVIVD 277
           +A VLQ K +NY+ DLF  L+ A+ ++T                   +     + R+I D
Sbjct: 244 VACVLQGKLSNYESDLFTPLLAAAVKLTNFAQSSELREASIEQLAVSDEKGAASLRIIAD 303

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H R+S+FLI+DG+LPANEGRGYVLR+I+RR + + RLLG  +P M  ++ A+  EMG AY
Sbjct: 304 HARASTFLISDGVLPANEGRGYVLRKILRRGIRHGRLLGQEKPFMHEMVLAVRDEMGEAY 363

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL  +   + + + +E+++F +TL+ GL  ++            +G  AF LY+T G+P
Sbjct: 364 PELKDSAERVAKVVLAEEQQFARTLELGLRQMNEETLR-------SGSQAFHLYETFGMP 416

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           LD M D     G    D+  F  A EE++ RARA   G    +   ++  L      T+F
Sbjct: 417 LDFMVDAARDAG-IEFDMAGFEAAKEEEQQRARASWKGGSQKSASPVYRELA----KTEF 471

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY  LR                         + V A+V+ G  V E   G+  EVV D 
Sbjct: 472 EGYTSLRVDG----------------------AKVIALVKDGVGVNELKPGETGEVVLDA 509

Query: 518 TPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           T FYA++GGQ+GD G          +      KK       HA+  +  +    ++   +
Sbjct: 510 TSFYADSGGQVGDVGWLYSADHNTVVAEVSGCKKPVQGVFAHAVTVKQSIAVGDTVDTVV 569

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           + + R  +  NH+ THLLH AL  +LG+HV Q GS      LRFD +H   +   EL+ +
Sbjct: 570 NGEVRAAVMRNHTGTHLLHAALRQVLGTHVKQAGSLNDRARLRFDFSHFTGVADEELQEV 629

Query: 636 EDNVNDIIAQNLPVVTRIMNRED--AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           ED VN  +  N  V T +    D      GA AL G KY +RVRVV +     G  S+ L
Sbjct: 630 EDIVNRQVLANTLVQTLVDVPIDVAVHELGAMALFGEKYGERVRVVKI-----GDFSTEL 684

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-S 752
           CGGTH+++TGEI L+ +V E ++ +G+RR+EA+TG  + +     D  +  +A+      
Sbjct: 685 CGGTHIAATGEIGLVKLVGEGAVASGVRRVEAVTGTGSLAVFRR-DADVAKVAAQFGAGD 743

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSK 807
             ++  RV    +E +KL+    + +++      +       ++  V  ++  +  +D  
Sbjct: 744 ADSLRARVAAQDDEMKKLRRELEQMRMKSASAATADAASSAVEVKGVKVLAQRVDALDKS 803

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
           ++++++D L+ K+ SG+++L G + E + S+++ VT+DL+ +  A  +    A  +GG G
Sbjct: 804 QMRNLVDELRGKLGSGVVVL-GAATEGRVSLIVGVTKDLIGKVQAGKIVGQIAAKVGGKG 862

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            GGRP +A++GG +    D A+A  A  + +
Sbjct: 863 -GGRPDLAEAGGSDVAALDGALASAAGVVGE 892


>gi|312898889|ref|ZP_07758277.1| alanyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620051|gb|EFQ03623.1| alanyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 868

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/905 (37%), Positives = 503/905 (55%), Gaps = 53/905 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L+FF+   H  L S SL+P NDP+L+   +GM P K  FTG+  P    V
Sbjct: 4   MTGNEIRKAYLDFFESKKHLKLHSFSLVPENDPSLLLIGAGMAPLKPYFTGKLVPPSYRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+  +LD
Sbjct: 64  TTSQKCIRTG----DIDNVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWEFLTEVLELD 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+TVY EDEEA+ +W  I GL+ ++I ++   DNFW + E GPCGP SEIF+D G 
Sbjct: 120 TNKLYVTVYPEDEEAYDIWHNIVGLADERIFKL--EDNFWEIGE-GPCGPDSEIFYDLGP 176

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   + +RY+EIWNLVF QF +        L K +IDTG GLER+A+V+Q+
Sbjct: 177 ERGCGKPTCNVGCDCDRYLEIWNLVFTQFNKTKDGSYEPLEKKNIDTGAGLERLASVIQQ 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-NHRVIVDHLRSSSFLIADGILPANEGRG 298
           K +N++ DL   ++Q    V    Y         +VI DH+R+ + +I DGILP+NEGRG
Sbjct: 237 KESNFETDLLFPIMQRVIDVCHGDYNNKEQKIAVKVIGDHIRAVTMMIGDGILPSNEGRG 296

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + R+LG  E  +  L+  +      AYPEL + K LI+  + +E+ +F
Sbjct: 297 YVLRRILRRAVRFGRVLGIEEAFLADLVDIVIDMYKEAYPELAERKELIKTVIATEEAQF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TL +GL LL+ ++       +L G+  FKLYDT G P+++ ++I+   G+  ID   F
Sbjct: 357 SATLAQGLELLNAMIEDADGTGVLAGEKVFKLYDTFGFPVELTEEIVQEHGMT-IDHDGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++A++ Q+ RARA    + +                                 D   L Q
Sbjct: 416 DKAMKAQQERARAARAKVSAKVA----------------------------TPDTTGLDQ 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
              +   N V++ V  I   G  VE A     + ++ D+TPF+AE GGQ+GDTG   G  
Sbjct: 448 SALVKDENAVNARVVLIGIDGAAVERAEKDTAITIILDKTPFHAEGGGQIGDTGYITGPS 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++TD +  A G+    AIV  G L     + +T+D      ++ NH+ATHLL  AL 
Sbjct: 508 GKAEVTDTKSLANGLTYMIAIVTEGSLSRGDEVDITVDKVRNLDIARNHTATHLLQAALR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV+Q GS +TP+ LRFD TH  P+T+ EL  +E  VN  I +N+ +    M  +D
Sbjct: 568 KVLGTHVNQAGSLVTPERLRFDFTHFSPMTNEELAEVEKEVNRQIMKNVDLEIEEMPVDD 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI  GA AL G KY D VRVV+V        S  LCGG+HV +T  I    IV ES    
Sbjct: 628 AIKKGAMALFGEKYGDIVRVVNVPG-----FSCELCGGSHVPNTSVIGSFRIVGESGTGT 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEA+TG+ A    +     L+  A+ LK  + ++  ++E++    ++ +   A+  
Sbjct: 683 GIRRIEAVTGKAAHERAVADAVLLQEAATLLKSKEADIPAKIEQLLTALKEAEREVAQLS 742

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +L    L     +  +I  V+  +  ++   ++ L+ + D +  K+    I+L+G  + 
Sbjct: 743 HKLATSSLDDILAAKEEIHGVSVTAASVTVDSAEGLRDMADMVLDKVGG--IVLLGAVQG 800

Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K S +  V ++L    ++A  + + +A   GGGG GGRP MAQ+GG +  K ++A+   
Sbjct: 801 DKVSFVCKVDKELTKQGYHAGKIVKAAAVAAGGGG-GGRPDMAQAGGKDPQKLEEALKAG 859

Query: 893 ASFLK 897
              ++
Sbjct: 860 KEAVQ 864


>gi|258446862|ref|ZP_05695016.1| alanyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257854437|gb|EEV77386.1| alanyl-tRNA synthetase [Staphylococcus aureus A6300]
          Length = 876

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/914 (36%), Positives = 509/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD        
Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSA
Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M+   A   GA AL G KY D VRVV++      + S  LCGG HV +T EI L  
Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMA-----LFSIELCGGIHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S +KV   + VV ++ ++ +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQLQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q  
Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              ++++ +  ++K
Sbjct: 861 NISKSLSFIKDYIK 874


>gi|224372192|ref|YP_002606564.1| alanyl-tRNA synthetase [Nautilia profundicola AmH]
 gi|223588444|gb|ACM92180.1| alanyl-tRNA synthetase [Nautilia profundicola AmH]
          Length = 853

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/900 (39%), Positives = 525/900 (58%), Gaps = 55/900 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FLEFF+  GH++ PS+ L+P +DPTL+FTN+GMVPFK IFTG++  P      + 
Sbjct: 2   DIRKKFLEFFESKGHKVYPSAPLVP-DDPTLLFTNAGMVPFKPIFTGEKPAPEPPRACSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG TNRHHT FEMLGNFSFG YFKE AI  AW+ +T+  +L + +
Sbjct: 61  QLCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFGDYFKEEAIAYAWEFVTEVLELPKEK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L+IT+++ D+EA K+W+K   +  ++I+++   DNFW M +TGPCGPCSEI FDQG +  
Sbjct: 121 LWITIHESDDEAGKIWEKY--VPKERIVKMGDKDNFWQMGDTGPCGPCSEIHFDQGADKF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+ +    +   LPK SIDTGMGLER+  + +  T+N
Sbjct: 179 NSPEDYLGGDGDRFLEIWNLVFMQYNRDESGKLTPLPKPSIDTGMGLERITAIKEGVTSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           YD  +F+ L++   ++TG +Y  +    +HRVI DH+R+ +FL A G+  + EGRGYVLR
Sbjct: 239 YDSSIFRPLLEKIVEITGKEYHTDKRGASHRVIADHIRAVTFLTAQGVQFSREGRGYVLR 298

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RR + +  LLG  EP M  ++  L  +MG  YP L++ K  +++T++ E+ERF +T+
Sbjct: 299 RILRRGVRHGYLLGMREPFMYKIVDTLAEQMGEQYPYLLEKKESVKDTIKLEEERFFETI 358

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           D+G+ L +  L      +  +G+VAFKLYDT+G PLD+ QD+L       +D+ +FN  +
Sbjct: 359 DKGMQLFEEELKKTT-GDTFSGEVAFKLYDTYGFPLDLTQDMLREVN-KQVDMKTFNALM 416

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           +EQ+ RARA+  G G     KI     EK    +F+GY+                     
Sbjct: 417 QEQKDRARANWKGSG---DVKINLKDLEKVENNKFVGYEHTEY----------------- 456

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG----CAIGDG 538
                  + VKA+  +   + E ++G    V+ ++TPFYAE+GGQ+GD G          
Sbjct: 457 ------KTKVKALFDENMNMVETLNG-SGWVMLEETPFYAESGGQVGDKGELRTYPTSQN 509

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             L+I       +     +              V+    +NR +++ NH+ATHLLH AL 
Sbjct: 510 GELRIVAKVVDTKKFDDKNLSKVVEAELKTGDEVVAKVDENRSEIAKNHTATHLLHAALR 569

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +  + LRFD TH K +T  EL+SIE+ VN +IA+++P   + M+ ++
Sbjct: 570 KVLGEHVTQAGSLVEANRLRFDFTHPKALTKEELESIEEMVNRVIAKSIPAEVKEMSIDE 629

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA AL G KY D VRVV       G  S  LCGGTHV++T E+   YI+ ES + A
Sbjct: 630 AKKMGAMALFGEKYGDVVRVVKF-----GDFSVELCGGTHVNNTAEVNSFYIIKESGVSA 684

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+ G  A  +  G  + ++ + S  K    ++   VE+  EE +KL+    + +
Sbjct: 685 GVRRIEAVAGFGAYRYAKGFRDLVEEIKSENKAK--DLKAFVEKQKEEIKKLKTEIKELE 742

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            +  V+++       +N++   I   +   L+ +   L+ ++ + +  L G +K  K ++
Sbjct: 743 -KAAVKEIKPVNKDGINYVIERIDNAN---LREIATDLKGRVDNLVAFLAGENK-GKVTL 797

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           + V T   +D   A DL +  A ++ GG GGG+P  AQ GG +  K D+ IA V   L K
Sbjct: 798 VAVST---VDSVKAGDLIKNYAPIV-GGKGGGKPDFAQGGGKDSGKIDEMIAQVKKDLIK 853


>gi|312127607|ref|YP_003992481.1| alanyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777626|gb|ADQ07112.1| alanyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 881

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/909 (37%), Positives = 520/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 178 EKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHKLKNPNIDTGMGLERIAAIMQE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VT  +Y  +    V+ RVI DH+R + F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  ILNG++ FK+YDT+G PLD+ ++I   +G+  +D 
Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKETILNGEIVFKMYDTYGFPLDLTKEIAAEKGII-VDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   + E    T F+GYD L+           
Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLKQ---------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I    E    A       V+ D+TPFYAE+GGQ+ D G   
Sbjct: 466 -------------EAKILKIFLDNEETAYAKEDDVCFVILDKTPFYAESGGQVADKGILE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K   G  +H   V +G +    S+V  +D + R     NH+ATHLLH 
Sbjct: 513 GEGVLAEVLDVKKGPRGTILHKVKVLKGEISVLSSVVAKVDEELRLATMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS ++PD LRFD  H +P++  ++  IE  VN++I Q +PV   + +
Sbjct: 573 ALRKILGQHAQQSGSQVSPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++  + + L+   
Sbjct: 688 VAAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLENEV 747

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   +LS          +   + +     D   +K + D ++++  S  I+L  
Sbjct: 748 EKYKLLVVENELSSLYSKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKER-DSKAIVLNI 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I +  K ++L+  +++ + +  +   + +    VL GG GGGRP  AQ GG +  K D A
Sbjct: 807 IQQGSKVTILMSCSKEAVKKGVDCGKVVKEVCSVL-GGKGGGRPDFAQGGGNDVLKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 LQTAENILK 874


>gi|312875971|ref|ZP_07735960.1| alanyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797169|gb|EFR13509.1| alanyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 883

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/909 (37%), Positives = 520/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 178 EKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VT  +Y  +    V+ RVI DH+R + F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  ILNG++AF++YDT+G PLD+ ++I   +G+  +D 
Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKETILNGEIAFRMYDTYGFPLDLTKEIAAEKGII-VDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   + E    T F+GYD L            
Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLEQD--------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I    E            V+ D+TPFYAE+GGQ+ D G   
Sbjct: 467 --------------AKIFKIFLDNEETAYVKEEDVCFVILDKTPFYAESGGQVADKGILE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K  +G  +H   V +G +    S+V  +D + R     NH+ATHLLH 
Sbjct: 513 GEGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVDEELRLATMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS +TPD LRFD  H +P++  ++  IE  VN++I Q +PV   + +
Sbjct: 573 ALRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSALKMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++    + L+   
Sbjct: 688 VAAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENTIKALENEV 747

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   +LS          +   + +     D   +K + D ++++  S  I+L  
Sbjct: 748 EKYKLLVVENELSSLFGKAVDYGEFKLIVNRKETDDMDYVKLLTDKIKER-DSKAIVLNI 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I +  K ++L+  +++ + +  +   + +    VL GG GGGRP  AQ GG + +K D A
Sbjct: 807 IQQGSKVTILMSCSKEAVKKGVDCGKVVKEVCSVL-GGKGGGRPDFAQGGGNDISKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 LQTAENILK 874


>gi|325265418|ref|ZP_08132142.1| alanine--tRNA ligase [Clostridium sp. D5]
 gi|324029419|gb|EGB90710.1| alanine--tRNA ligase [Clostridium sp. D5]
          Length = 879

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/894 (38%), Positives = 501/894 (56%), Gaps = 48/894 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDDAIKWSWEFLTEVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++W K  G+ A++I +    DNFW    +GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLDDDEAFEIWNKKMGIPAERIFKFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+EIWN VF QF+   K     L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGKGNYVELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++    Y   +   V+ RVI DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SIFDVDTIKALRDHVCRLADAAYGNEDNTDVSIRVITDHVRSVTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLL      +  L   +       YPEL + K  I + +  E+E+F 
Sbjct: 301 VLRRLLRRACRHGRLLNIEGNFLPALAETVIEGSKDGYPELEEKKDFILKVIAKEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            T+D+GLV+L  +++ + K     L+GD AFKLYDT+G P+D+ ++IL  + +  +D   
Sbjct: 361 NTIDQGLVILSDMIAGMEKRGEITLSGDDAFKLYDTYGFPIDLTKEILEEKEM-NVDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+ A+E QR  ARA          +   +   +    + F+GYD L              
Sbjct: 420 FHAAMEIQRKTARAARGVTNYMGADVTVYESIDPSITSTFVGYDNL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + E+ E    G++  +   +TPFYA +GGQ  D+G     
Sbjct: 466 ---------VYESEITVLTSETEVAEALSDGERGTIFVKETPFYATSGGQEADSGVIRTP 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D  K   G   H   V +G+++T     L +D + R   + NHSATHLL  AL
Sbjct: 517 EGEFKVEDTIKLLGGKIGHVGHVVKGMVKTGDKAELAVDARKRSLSARNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG+HV Q GS +  D LRFD TH   ++  ELK +E+ VN+ IA+ LPV  + M  E
Sbjct: 577 RTVLGTHVEQAGSSVNEDRLRFDFTHFSALSQEELKQVENIVNEHIAEALPVDIQNMPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV++        S   CGGTHV +T EIM   I+SE+ + 
Sbjct: 637 EARKTGAQALFGEKYGDIVRVVNMGG-----FSIEFCGGTHVKNTSEIMAFKIISETGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T Q    +    + K+   A  LK S  N+  ++  +  E + L       
Sbjct: 692 AGVRRIEALTSQGLLDYYDALEVKMNEAAKLLKASSDNLAEKITHVMAENKTLHSEVESL 751

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  +          ++  V  ++  +  VD   L+ + D +++K+  G+++L   S 
Sbjct: 752 KSRLAQDAMGDVMDQVREVKGVKLLAAEVDGVDMNGLRDLGDQMKEKLGEGVVVLASGS- 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           + K S+++  T+  +    +A +L +  A ++GGGG GGRP+MAQ+GG N    
Sbjct: 811 DGKVSLMVTATDGAMKQGAHAGNLVKAIAGLVGGGG-GGRPNMAQAGGKNPAGI 863


>gi|254425077|ref|ZP_05038795.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196192566|gb|EDX87530.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 887

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/905 (37%), Positives = 496/905 (54%), Gaps = 49/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL F++  GH +L S+SL+P  DPT++ T +GM+PFK IF GQ    +   T
Sbjct: 19  SGADIRKQFLSFYEARGHRILDSASLVPE-DPTVLLTIAGMLPFKPIFLGQRSVEFDRAT 77

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI  AW+L T+ F L  
Sbjct: 78  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKAQAIAWAWELSTEIFKLPA 133

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+  +++ +D+EAF +W+   G+  ++IIR+   DNFW    TGPCGPCSE+++D    
Sbjct: 134 DRIVPSIFRDDDEAFAIWRDEIGIPENRIIRMGEADNFWKSGPTGPCGPCSELYYDFHPE 193

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ   N
Sbjct: 194 -RGDDTIDLEDDTRFIEYYNLVFMQYNRDAEGNLEPLQAQNIDTGLGLERMAQILQGVPN 252

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQA+ Q+  + Y        V+ +VI DH+R+   ++ADGI  +N GRGY
Sbjct: 253 NYETDLILPIIQAAAQIANLDYHQATDAQKVSLKVIGDHVRAVMHMVADGISASNVGRGY 312

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RLLG   P    +          AYP +   +  I+  L  E+ +F 
Sbjct: 313 VLRRLIRRVVRHGRLLGIDRPFTTEVAERSIALTEDAYPAVRTRETAIKNELDREETQFL 372

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RG   L  +L+   + + ++G  AF+LYDT+G PL++ Q+I    G+  +D   F 
Sbjct: 373 QTLARGEKRLADILAE--QPKQVSGKDAFELYDTYGFPLELTQEIAEESGIT-VDTERFE 429

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +QR R++A    +       +  +L E+  +T+FIGY  L                
Sbjct: 430 IEMSQQRERSKAAHETIDLTVQSSLD-TLAEQIDSTEFIGYQRLNS-------------- 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+AI+  GE V+ A +G  V++V DQTPFYAE+GGQ+GD G   GD +
Sbjct: 475 ---------QSRVEAILINGESVDLAETGDDVQIVLDQTPFYAESGGQIGDRGYLSGDTV 525

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV+K+    FVH   VERG L  +  +   ID   RR+   NH+ATHLL  AL +
Sbjct: 526 VIRIEDVKKEGAF-FVHFGKVERGSLTVDSQVSAQIDRACRRRAQANHTATHLLQAALKS 584

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   +SQ GS +  D LRFD    + +T  +L+ +E  VN  IA+      + M   +A
Sbjct: 585 LVNESISQAGSLVDFDRLRFDFHCPQALTPEQLQQVEKQVNSWIAEAHDADVQTMPIAEA 644

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY D VRV+          S  LCGGTHVS+T EI +  I+SE+ I AG
Sbjct: 645 KAKGAVAMFGEKYGDEVRVIDYPG-----VSMELCGGTHVSNTAEIGVFKIISETGIAAG 699

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G     +L  +D  ++ L++  K     +  RV  +  E +  Q   A  K 
Sbjct: 700 IRRIEAVAGPAVLDYLEVRDRIVRDLSARFKTKPEEISDRVTALQTELKNAQKDLAALKS 759

Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +            I  +  +   +  V++  LK+  + L +K+  G ++L  +  E 
Sbjct: 760 ELALAKSDQLLNKAEAIGGIPIIVANLEAVEADALKTAAERLLQKLGDGAVVLGSVPTEG 819

Query: 835 KASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K S++   ++ ++     A       AK+ GGGG GGRPH AQ+GG +  K  +A+    
Sbjct: 820 KVSLVAAFSKPVISKGLQAGKFIGGIAKLTGGGG-GGRPHFAQAGGRDATKLPEALEVAK 878

Query: 894 SFLKK 898
             +K+
Sbjct: 879 DQIKE 883


>gi|291542143|emb|CBL15253.1| alanyl-tRNA synthetase [Ruminococcus bromii L2-63]
          Length = 877

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/910 (35%), Positives = 496/910 (54%), Gaps = 52/910 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    ++ +R  FLEFF+  G   LPS SL+P +D +L+  NSGM P K  FTG+  P  
Sbjct: 1   MKWTGLNELREKFLEFFESKGCLRLPSFSLVPKDDNSLLLINSGMAPMKKYFTGEVTPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R      D++ VG T RH TFFEMLGNFSFG YFK  A   AW+  TK  
Sbjct: 61  KRVTTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFGDYFKHEATAWAWEFFTKVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++   +LY+++Y++D+EAF +W K  G+    ++R+   DNFW    +GPCGPCSEI+FD
Sbjct: 117 EMPPEKLYVSIYEDDDEAFDIWTKEVGVDPSHMVRLGKEDNFWEHG-SGPCGPCSEIYFD 175

Query: 179 QGECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +G+    G P      E +R++E+WNLVF QFE   K     L   +IDTGMGLER+A V
Sbjct: 176 RGDEKGCGRPDCHVGCECDRFVEVWNLVFTQFESDGKGNYTPLEHPNIDTGMGLERLACV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   N + +D  +++++   Q+TGM+Y  N    V+ RVI DH+RS++F+I DG+LP+N
Sbjct: 236 MQGVDNLFLVDTIQNIMKHISQITGMEYGKNEKSDVSLRVITDHIRSTTFMIGDGVLPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EG+GYVLRR++RRA  + RLLGY EP +  +   +  E  +AYPEL + +  I + ++ E
Sbjct: 296 EGKGYVLRRLLRRAARHGRLLGYNEPFLYKVCDTVIKENLTAYPELKEKQEFITKVIKVE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F KT+D+G  +L+G++      ++L+G+ AFKL DT+G P+D+ ++IL  +G+  +D
Sbjct: 356 EESFAKTIDQGFKMLNGIMDS-EDVKVLSGEDAFKLNDTYGFPIDLTREILSEKGIK-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F + ++EQ+ R+R      G+         L +    T+F+GY  L+          
Sbjct: 414 VERFRELMKEQKKRSRDARKNAGADAWISDATDLSD-VANTEFVGYTDLKS--------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         +S V AIV+ G  V+    G+   +V D+TPFY E GGQ+GDTG  
Sbjct: 464 --------------TSKVLAIVKDGVRVDSIGEGENAIIVLDKTPFYGEGGGQVGDTGVM 509

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIV-ERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   + +  K   G    HA   + G +     +   +D + R  ++ NH+A HLL
Sbjct: 510 ESGSFSADVDNTTKNPSGTIYLHACTVKSGSINVGAEVSTAVDEERRADITRNHTAAHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG+HV Q G  ++ D  RFD TH + +T+ EL  +++ VN  I + +PV T+ 
Sbjct: 570 QSALREVLGNHVQQAGQLVSDDYFRFDFTHFEALTAKELIEVQNLVNKKILEAIPVTTQE 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  E+A   GA AL G KY D VRVVS      G  S   CGGTHV +T  + L  I  E
Sbjct: 630 MPIEEAKKLGAMALFGEKYGDVVRVVS-----AGDFSVEFCGGTHVKNTANLGLFRIRQE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQL 772
            S+ AG+RRIEA+TG     ++ G    +  + S LK  +   VV  V++  +  ++ Q 
Sbjct: 685 GSVAAGVRRIEALTGMGVLKYINGMSAVIMDVCSLLKIANPKAVVEGVQKAEQLIKEQQR 744

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              +   +L V  +        +   V  ++  I + ++  L+++ +  +      + +L
Sbjct: 745 EINELNSKLAVAQIGQLFAGTTEENGVRVVTGRIDKANADILRTMCEKARDFAPKCVCVL 804

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                + K +      ++ L    NA  + +  A+   GG GGG+P MA +G     K  
Sbjct: 805 A-TENDGKVTFAAACGKEALALGANAGKIIKAVAQK-AGGNGGGKPDMAMAGAKQPEKIS 862

Query: 887 QAIAGVASFL 896
           +A+  V   +
Sbjct: 863 EALDSVKETV 872


>gi|126660159|ref|ZP_01731277.1| alanyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126618524|gb|EAZ89275.1| alanyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 879

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/906 (36%), Positives = 505/906 (55%), Gaps = 48/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+F+ +  H++LPS+SLIP  DPT++ T +GM+PFK IF GQ++P +   T
Sbjct: 9   TGNQIRDRFLQFYAQQNHQILPSASLIPE-DPTVLLTIAGMLPFKPIFLGQKQPDFPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L T+ + L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTQVYQLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V++ D+EAFKLW+++ G+   +I R+   DNFW    TGPCGPCSE+++D    
Sbjct: 124 ENIVVSVFENDDEAFKLWEEMIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFM++ +  +     L K +IDTGMGLERMA +LQ+  N
Sbjct: 184 -RGEESIDLEDDSRFIEFYNLVFMEYNRDVEGNLTPLQKKNIDTGMGLERMAQILQKVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  +  + Y         + +VI DH+RS   +I+DGI  +N  RGY
Sbjct: 243 NYETDLIFPIIETAANIANINYHKATEKTKVSLKVIGDHVRSVVHMISDGITASNTDRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +          AYP++ + +  I+  L  E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGIEGQFINQVAETAIQLSQKAYPQVRERESFIKGELEREETAFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RG  LL  ++    K   ++G  AF LYDT G P ++ Q+I     L       F 
Sbjct: 363 KTLERGEKLLAEIIEKTEKQGQISGVDAFTLYDTFGFPFELTQEIAEESNLTVNIKE-FE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +++Q+ R++A    +   T +     L E    T+F+GY  L+               
Sbjct: 422 AEMKQQQERSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDLQ--------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   +++ V+A++ QG+ V+ A +G +V++V DQTPFY E+GGQ+GD G   G+ +
Sbjct: 466 --------LTAKVEAVLIQGKSVDIAEAGSEVQIVLDQTPFYGESGGQIGDRGFLTGENL 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ DV +K  GIFVH   VERG +    ++  TID   RRQ+  NH+ATHLL  AL  
Sbjct: 518 VIRVDDV-QKESGIFVHFGRVERGQIAINDNVKATIDRACRRQVQANHTATHLLQAALKK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++ + +SQ GS +  D LRFD    + +TS EL+ IED +N  IA+     T +M  E A
Sbjct: 577 VVDNSISQAGSLVAFDRLRFDFNCPRAVTSEELQEIEDLINTWIAEAHDTETAVMPLETA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY+  VRV+ V        S  LCGGTHV +T EI L  I+SES I +G
Sbjct: 637 KEKGAIAMFGEKYSAEVRVIDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGISSG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G     +L  ++  +K L    K+    +  R+  +  E +  Q      K 
Sbjct: 692 IRRIEAVAGPAILEYLKVRETVVKDLCDRFKIKPEEISDRITTLQSELKTTQKQLEAVKQ 751

Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            L V            I +   +   + E+D+K L++  + LQ+K+  G ++L  I  E 
Sbjct: 752 DLAVAKSDQLLNEAETIGEFKLLVSDMGELDAKALQTAAERLQQKLGEGAVILGSIPSEG 811

Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   ++ +    +  A       AK+ GGGG GGRP++AQ+GG   +K  +A++  
Sbjct: 812 KVSLVAAFSKKVNKEKQLQAGKFIGQIAKICGGGG-GGRPNLAQAGGREPSKLSEALSTA 870

Query: 893 ASFLKK 898
              L +
Sbjct: 871 KQQLIE 876


>gi|222529322|ref|YP_002573204.1| alanyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456169|gb|ACM60431.1| alanyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 883

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/909 (38%), Positives = 524/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 178 EKGCGRPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VTG  Y  +    V+ RVI DH+R + F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTGYDYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  +LNG++AFK+YDT+G PLD+ ++I   +G+  ID 
Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKETVLNGEIAFKMYDTYGFPLDLTKEIAAEKGII-IDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   + E    T F+GYD L+           
Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLKQ---------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I    E    A       V+ D+TPFYAE+GGQ+ D G   
Sbjct: 466 -------------EAKILKIFLDNEEPAYAKEEDVCFVILDKTPFYAESGGQVADKGILE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K   G  +H   V +G +    S+V  +D + R     NH+ATHLLH 
Sbjct: 513 GEGVLAEVLDVKKGPRGTILHKVKVLKGEITVLSSVVAKVDEELRLAAMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS +TPD LRFD  H +P++  +L  IE+ VN+II Q +PV   + +
Sbjct: 573 ALRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQLIEIEEMVNNIIQQAIPVEKIVTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++  + + L++  
Sbjct: 688 VAAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLEVEI 747

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   +LS          +   + +     D   +K + D +++K  S  I+L  
Sbjct: 748 EKYKLLVVENELSSLFGKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKEK-DSKAIVLNI 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           + +  K +VL+  +++ + +  +   + +    VL GG GGGRP  AQ GG + +K D A
Sbjct: 807 LEQSSKVTVLMSCSKEAVKKGVDCGKVVKEICSVL-GGKGGGRPDFAQGGGNDISKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 VQTAENILK 874


>gi|242242892|ref|ZP_04797337.1| alanyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233667|gb|EES35979.1| alanyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 876

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/911 (37%), Positives = 515/911 (56%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +
Sbjct: 4   MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   
Sbjct: 64  VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++  +LY+T++ ED EA+++W +  GL   +IIRI    NFW + E GP GP +EIF+D+
Sbjct: 120 MEPEKLYVTIHPEDTEAYRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176

Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLERM +
Sbjct: 177 GLAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           + Q    NY+ DLF  +I+  E V+G KY  ++   V  +VI DH+R+ SF IADG LPA
Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPA 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  ++S
Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSHFIKRVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E+ERF +TL+ GL +L+ ++      D+++ G  AFKLYDT+G P+++ +++     L+ 
Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLS- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+ +F Q +++QR RAR       S   +     LK     +QF+GY+           
Sbjct: 416 VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDDSQFVGYETTDY------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S++  I+  GE V+ A +G+ +  +  +TPFYA +GGQ+ D G
Sbjct: 467 ----------------QSLLTHIIYNGEEVKHAEAGETIYFILRETPFYAVSGGQVADKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + +TDV K   G  +H  +V+ G       +   ++ ++RR +  NHSATHL
Sbjct: 511 TVGNENFEINVTDVTKAPNGQNLHKGVVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I + + V  +
Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T EI L  IVS
Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFKIVS 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771
           ES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++ EE ++L 
Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNTIKNHLKVKSDNQVVEKVKQLQEEEKELL 745

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               +R      L+L   +     I D+  ++  +   + K ++S+MD  + K+Q  II+
Sbjct: 746 KQLEQRNKEITSLKLGNIEEQVELINDLKVLATEVEIPNPKAIRSIMDDFKSKLQDTIIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP MAQ GG    K  
Sbjct: 806 LVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863

Query: 887 QAIAGVASFLK 897
           +A+  +  ++K
Sbjct: 864 EALRFIKDYIK 874


>gi|6707748|sp|Q9XDM3|SYA_AQUPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|4587716|gb|AAD25871.1|AF027500_1 alanyl-tRNA synthetase [Aquifex pyrophilus]
          Length = 871

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/902 (39%), Positives = 531/902 (58%), Gaps = 48/902 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+  T
Sbjct: 4   SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   L +
Sbjct: 64  SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY++VY +DEEA+++W +  G+ +++I R+   DNFW M +TGPCGP SEI+ D+GE 
Sbjct: 124 ERLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDTGPCGPSSEIYVDRGEE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G          RY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ K +
Sbjct: 184 YEGEE--------RYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ID+   LI+  E+V+G KY  +    V  RVI DHLR+ +F I+DG++P+NEGRGYV
Sbjct: 236 NFEIDIIYPLIEFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRAM +   LG TEP +   +  +   M   YPEL  ++  ++  ++ E+ERF +
Sbjct: 296 IRRILRRAMRFGYQLGITEPFLYKGIDLVVDIMKEPYPELELSRDFVKGIVKGEEERFIR 355

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G+  +  V+        + L G   F  YDT+G P+D++Q+I   +GL  ID+  F
Sbjct: 356 TLRSGMEYIQEVIEKALSEGRKTLTGKEVFTAYDTYGFPVDLIQEIAKEKGLE-IDLEGF 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              LEEQR RAR     + +   + ++  LKE    ++F+GY+ L               
Sbjct: 415 QCELEEQRERARKS-FKIETKEVKPVYAHLKELGITSRFVGYEHLEY------------- 460

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + V  I+   EIV E   G++ E++  +TPFY E GGQ+GD+G    D 
Sbjct: 461 ----------ETEVLGIIVGDEIVSEIKEGEEGEIILRETPFYPEGGGQIGDSGIIETDK 510

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D Q+  EGI VH   + +G +  +  +   +D + R  +  NH+ATHLLH AL 
Sbjct: 511 GIFKVEDTQRPTEGIIVHIGKLLKGKISVKDIVHARVDKERRWDIMRNHTATHLLHAALR 570

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +    LRFD TH  P+T  E+K IE+ VN+ I +NLPV    M  ++
Sbjct: 571 NLLGEHVRQAGSLVADKYLRFDFTHFSPLTEEEIKRIEELVNEKIRENLPVSVMEMAYQE 630

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ +GA A+   KY +RVRV+S      G  S  LCGGTHVS+TG+I    I+SESS+ A
Sbjct: 631 ALQTGAIAIFEEKYGERVRVISC-----GEFSKELCGGTHVSATGDIGYFKIISESSVGA 685

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRI A TG+ A +    +   LK +++ L V +  VV +VEE+ EE ++ +    K +
Sbjct: 686 GVRRIVAQTGRWAVNTAFEEHTTLKKVSNALGVKEDEVVQKVEELKEEIKEKEKEIQKLR 745

Query: 779 LQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            ++      E +   +  ++     +  +V+ +EL+++ D L+++    ++ +    KE 
Sbjct: 746 QEILKLQIREKVKEERHRELTLYYGVFEDVEPEELRNLADILRQRTGKDVVFIAS-KKEG 804

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K + +I  ++ +     A +L R   KVL GGG GGR  +AQ GG   +K D+++  +  
Sbjct: 805 KINFVIASSKGISKEVRANELIRQVGKVLKGGG-GGREDLAQGGGKAPDKFDESVKLLKE 863

Query: 895 FL 896
            L
Sbjct: 864 LL 865


>gi|270290968|ref|ZP_06197191.1| alanyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|270280364|gb|EFA26199.1| alanyl-tRNA synthetase [Pediococcus acidilactici 7_4]
          Length = 881

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/915 (35%), Positives = 501/915 (54%), Gaps = 60/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR  +L+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   KSSSEIRRMYLDFFKSKGHVVEPSASLIPKDDPTLLWVNSGVATMKKYFDGSVVPEVPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFKE AI  AW+LLT  + FD
Sbjct: 64  TSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +D  +LY+TVY +DEEA K+W + +G+    I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 MDPEKLYVTVYPKDEEAKKIWLE-TGVDPSHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 GECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           GE          E        R++EIWN+VF QF  +       LP  +IDTGMGLER+ 
Sbjct: 176 GEEFNNLADDDPENYPGGENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVV 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +V Q+   N++ DLF  +I   E+++G KY  + N+ V+ +VI DH R+ +F I DG +P
Sbjct: 236 SVFQDAPTNFETDLFLPIIHEVEKLSGKKYGVDKNDDVSFKVIADHARAITFAIGDGAIP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV+RR++RRA+ + + L   +P +  ++P +   M   YPE++  K  IE+ ++
Sbjct: 296 SNEGRGYVIRRLLRRAVMHGKKLNINKPFLYQMVPVVGKIMEDYYPEVLADKDYIEKVIK 355

Query: 353 SEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF +TL  GL LL+ +++       ++++G  AF+L+DT+G PL++ ++    +G+
Sbjct: 356 SEEDRFNETLTDGLELLNSIIADTKADHSKVISGKDAFRLFDTYGFPLELAKEYAEDQGM 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +++Q+ RAR+      S   +     L +    ++++GYD L+      
Sbjct: 416 E-IDEAGFADEMQKQKERARSARSNAKSMGVQSDL--LTDLKTPSEYVGYDTLKVDA--- 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              +++K I+Q  ++ +    G+   V+FD TPFYAE GGQ+ D
Sbjct: 470 -------------------AVLKDIIQDDQLTDTVNPGE-ARVLFDVTPFYAEMGGQVAD 509

Query: 531 TGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G        +       + A      H I  +  +    S  L +D     ++  NH+A
Sbjct: 510 QGVIEDADGNVVAEVVDVQHAPNGQNLHTIKAKREMHAGESFTLIVDRAFHLKVEKNHTA 569

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL  +LG H  Q GS + P  LRFD TH   +T  +L+ +E+ +ND I   +PV
Sbjct: 570 THLLDQALRDVLGEHTHQAGSLVEPGYLRFDFTHFGQVTDEDLQKVEEIINDKIYDEIPV 629

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T   + E     GA AL   KY  +VRVVSV     G +S   CGGTHV +T EI L  
Sbjct: 630 TTVETDLETGKKMGAIALFDDKYGKKVRVVSV-----GDYSREFCGGTHVKNTNEIGLFK 684

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYR 768
           IVSES + AG+RRIEA+T Q A   L G++  L+  A  LK     +V  +VE++  + +
Sbjct: 685 IVSESGVGAGVRRIEAVTSQAALEFLNGEEALLQKAAGLLKSAQVKDVPAKVEQLQAQVK 744

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     + + ++   +++       +I  +  ++  +      +L+ + D  + K QS 
Sbjct: 745 DLNQTINQLEAKIAQAEVANIYDQVQEINGIRLITAEVQVSGMDQLRQMADDWKTKDQSD 804

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L     E KA+++  V +  +     A DL +  A  + GG GGGRP+MAQ+GG   
Sbjct: 805 VLVLGAKIGE-KANLIAAVKDPFVKEGLKAGDLIKAIAPKVNGG-GGGRPNMAQAGGSAP 862

Query: 883 NKADQAIAGVASFLK 897
            K ++A+   + +L+
Sbjct: 863 EKINEALKAASEWLE 877


>gi|319400948|gb|EFV89167.1| alanyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 876

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/911 (37%), Positives = 512/911 (56%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +
Sbjct: 4   MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   
Sbjct: 64  VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++  +LY+T++ ED EA+++W +  GL   +IIRI    NFW + E GP GP +EIF+D+
Sbjct: 120 MEPEKLYVTIHPEDTEAYRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176

Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLERM +
Sbjct: 177 GSDYGNDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           + Q    NY+ DLF  +I+  E V+G KY  ++   V  +VI DH+R+ +F IADG LPA
Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTIAFAIADGALPA 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  ++S
Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSHFIKRVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E+ERF +TL+ GL +L+ ++      ++++ G  AFKLYDT+G P+++ +++   +    
Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSNQVIKGHDAFKLYDTYGFPIELTEELAT-QEKLS 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+ +F Q +++QR RAR       S   +     LK     +QF+GY+           
Sbjct: 416 VDMSTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDDSQFVGYETTDY------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S++  I+  GE V+ A +G+ +  +  +TPFYA +GGQ+ D G
Sbjct: 467 ----------------QSLITHIIYNGEEVKHAEAGETIYFILRETPFYAVSGGQVADKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + +TDV K   G  +H  IV+ G       +   ++ ++RR +  NHSATHL
Sbjct: 511 TVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I + + V  +
Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T EI L  IVS
Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFKIVS 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771
           ES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++ +E + L 
Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNTIKNHLKVKSDNQVVEKVKQLQDEEKGLL 745

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               +R      L++   +     I +V  ++  +   D K ++S MD  + K+Q  II+
Sbjct: 746 KQLEQRNKEITSLKMGNIEEQVELINNVKVLATEVEIPDPKAIRSTMDDFKSKLQDTIIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP MAQ GG    K  
Sbjct: 806 LVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863

Query: 887 QAIAGVASFLK 897
           +A+  +  ++K
Sbjct: 864 EALRFIKDYIK 874


>gi|238018985|ref|ZP_04599411.1| hypothetical protein VEIDISOL_00847 [Veillonella dispar ATCC 17748]
 gi|237864469|gb|EEP65759.1| hypothetical protein VEIDISOL_00847 [Veillonella dispar ATCC 17748]
          Length = 871

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/903 (36%), Positives = 496/903 (54%), Gaps = 55/903 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +
Sbjct: 1   MKGNELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD
Sbjct: 61  TTSQKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG 
Sbjct: 117 KNRLYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ 
Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQG 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N++ DL   +I+A+ +  G+ Y    N  V+ +VI DH R+ + LI+DG+LP+NEGR
Sbjct: 234 CKTNFETDLIYPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ER
Sbjct: 294 GYVLRRILRRAVRHGRLLGIESIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEER 353

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID 
Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDH 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A++EQR RAR   +   +         LK++         +LL            
Sbjct: 413 EGFEAAMKEQRERAREARVKEDAKVATPDITFLKDE---------ELLEDEAV------- 456

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        +S V  I +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +
Sbjct: 457 ------------TASSVLMIGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIV 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G   ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH 
Sbjct: 505 GPMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+
Sbjct: 565 ALKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ 
Sbjct: 625 MDEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRIEAITG+ A +        ++ +A  LK     V  R+ ++  E ++      
Sbjct: 680 IGSGVRRIEAITGRAALNAAKHDRLTIERMAGELKTKAPQVEERLHQVLAEAKETAKELE 739

Query: 776 KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829
           + + +++    +        I DV F++  +      EL+ + D    ++  SG++++  
Sbjct: 740 QIRKEVSAAGAADIIAGKVMIGDVAFVAAAVKASSIDELRDLADMGLDQLNGSGVVLVGA 799

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K  +A
Sbjct: 800 AMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLAEA 858

Query: 889 IAG 891
           +  
Sbjct: 859 LKA 861


>gi|269792643|ref|YP_003317547.1| alanyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100278|gb|ACZ19265.1| alanyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 882

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/912 (36%), Positives = 512/912 (56%), Gaps = 51/912 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL FF++ G    PS+SL+P +DP+L+FT +GMVPFK  F G ++P  
Sbjct: 1   MKWRSGNELREMFLSFFEEKGCVRYPSASLVP-DDPSLLFTIAGMVPFKPYFLGIKEPKE 59

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R     ND+DNVGRT RHHTFFEMLGNFSFG YFK   I  AW+ LT+  
Sbjct: 60  RRVTTAQKCIRT----NDIDNVGRTARHHTFFEMLGNFSFGDYFKAEVIPWAWEFLTQRV 115

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            +D  RLY+TV+ +D+EA  +W    G+  D+I R+   DNFW+    GPCGPCSEI +D
Sbjct: 116 GMDPDRLYVTVFRDDDEAESIWMSSVGVPKDRIFRMGEEDNFWAAGPVGPCGPCSEIIYD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           QG     G P      + +RY+E+WNLVFMQ+ +        LP+ +IDTGMGLER+++V
Sbjct: 176 QGPEFSCGKPSCGVGCDCDRYLEVWNLVFMQYNRDEAGNLTPLPRKNIDTGMGLERLSSV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   ++++ DLFK +I  + Q++G+ Y       +  RVI DH+R+++F++ADG+LP+N
Sbjct: 236 VQWVRSDFETDLFKPIIDRACQISGVAYGSSPQGDLAVRVISDHIRAAAFMVADGVLPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EG GYVLRR++RR + + RLLG   P ++ +LP +   MG  Y EL++ +  I + L  E
Sbjct: 296 EGPGYVLRRLIRRTIRFGRLLGIDRPFLLEVLPVVEQVMGGHYGELVEHRSTINQVLELE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           + RF +TL++G  LL+  +  +      +  G+VAF+LYDT+G PL++  ++   +GL+ 
Sbjct: 356 ESRFLRTLEQGSALLEEEVRRVRSRGLSVFPGEVAFELYDTYGFPLELTSEMCQEQGLS- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +DI +F +A+E QR  AR+ S    +  T  ++  +  K G  +FIGYD   G       
Sbjct: 415 VDIEAFERAMERQRELARSGSKHASAAVTRTVYSDVL-KAGRIRFIGYDSEEG------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+V++GE+++ A  G +VEV  D TPFY E GGQ+GD G
Sbjct: 467 ----------------EARVVALVREGEMIQSAREGDRVEVFLDVTPFYGEKGGQVGDRG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               DG   Q+ D Q   +G+  H A + +G LR    +   +D + R  +  +H+ATH+
Sbjct: 511 EIRWDGGLAQVEDAQCPMDGLTSHLATLVQGELRVGQRVFCRVDGERRWHIRRHHTATHI 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q+GS +     RFD  H  P++  E+  +ED VN +I ++  V T 
Sbjct: 571 LHEALGRVLGGHVRQSGSWVGDGFFRFDFNHFSPLSDEEIARVEDLVNQVILEDRRVTTL 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             + + A   GA AL   KY   VRVVSVE       S+ LCGGTHVSS+G+I L  I  
Sbjct: 631 ETSMDSAREMGAKALFDEKYGQVVRVVSVEG-----FSTELCGGTHVSSSGQIGLFKIQR 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I +G+RRI A  G  +        E +K  +S L V    V  R+ ++  E + L+ 
Sbjct: 686 EEGIGSGLRRITATAGLASLEAYRRAAEVVKGASSALGVEAETVRDRIMDLMREVKSLER 745

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + +LQ+  E L        ++  +  +S +  +    EL+++ D++++     + +L
Sbjct: 746 ELRQLRLQVKSEGLKRALEAPQEVKGIKVLSFLTEDSSPDELRAMGDSVREMYPDSVCVL 805

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +      K  V+++ ++  +     A  L +     L G   GG+ + AQ GG   ++ +
Sbjct: 806 IS-RNGGKFMVIVMCSDGAVSKGVKAGSLIKSLGA-LWGFNAGGKANTAQGGGEWTDRME 863

Query: 887 QAIAGVASFLKK 898
             +  +   + +
Sbjct: 864 GLLRSMEEQVSQ 875


>gi|164688540|ref|ZP_02212568.1| hypothetical protein CLOBAR_02185 [Clostridium bartlettii DSM
           16795]
 gi|164602953|gb|EDQ96418.1| hypothetical protein CLOBAR_02185 [Clostridium bartlettii DSM
           16795]
          Length = 879

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/908 (38%), Positives = 542/908 (59%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F +FF+  GH +  SSSLIP ND +L+  NSGM P KN F+G E P    +
Sbjct: 4   MGCNEIRKSFTDFFESKGHYIGKSSSLIPKNDKSLLLINSGMAPLKNYFSGVEVPPKNRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           +TVQKC+R G    D++NVG+T RH TFFEM+GNFSFG YFKE AI+ AW+ +TK  ++ 
Sbjct: 64  STVQKCIRTG----DIENVGKTARHGTFFEMMGNFSFGDYFKEDAIKWAWEFVTKHLEIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +++ TVY  D+EA  LW K S +  ++I+R+  +DNFW +   GPCGPCSE+++D+GE
Sbjct: 120 EDKIWATVYLNDDEAHDLWLKYSSIPEERIVRLGKDDNFWEIG-LGPCGPCSELYYDRGE 178

Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                        + +RY+E WNLVF QF++Q       L   +IDTGMGLER+  ++Q+
Sbjct: 179 QYGCDNPDCKPGCDCDRYLEFWNLVFTQFDRQEDGSYPELAHKNIDTGMGLERIGCIMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D  + +I   E+V+G+KY  +  + V+ R+I DH+R+ SF+IADGILP+NEGR
Sbjct: 239 VDNIFEVDTIRAIIDEIERVSGVKYGVDAKSDVSIRIITDHIRAMSFMIADGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG  E  + +L   +    G AYPEL++ +  I++ ++ E+E+
Sbjct: 299 GYVLRRLLRRAARHGKLLGIKEDYLYNLFDVVKEVSGEAYPELVEKEGYIKKVIKIEEEK 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D+G  +L+G +  L    +  L G+  FKLYDT+G P+D+ Q+IL   G   +D 
Sbjct: 359 FNETIDQGSEILNGYIEELKANNESTLAGEKVFKLYDTYGFPMDLTQEILEEVGF-DLDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN  +++QR RAR+    +   + ++   S  +   A+ F GY  L            
Sbjct: 418 EGFNTEMDKQRERARSARGNMEGESWKEDPLSTLDSSVASTFCGYKHL------------ 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        + +V AIV+  EIV+    G K  +V D+T FYAE GGQ+GD+G   
Sbjct: 466 -----------STTGVVNAIVKDDEIVDSITEGDKAIIVLDRTTFYAEGGGQVGDSGILE 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +    ++   +K A     H  IV++G + T+  L   ++ + R   + NHSATHLLH 
Sbjct: 515 NENAVFEVITTKKGANNTIKHIGIVKKGSINTKDELKSLVNREIRMASARNHSATHLLHK 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS +TP+ LRFD+TH +PI+  EL  +E  VND+I Q+L +   +M 
Sbjct: 575 ALKETLGEHVNQAGSLVTPERLRFDITHFEPISKEELDIVERKVNDVILQSLDIDCEVMG 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A   GA AL G KY + VRVVS+     G +S  LCGGTH+++T ++ L  I+SE  
Sbjct: 635 INEAKEKGAMALFGEKYGNEVRVVSM-----GDYSIELCGGTHLNNTSQVGLFKILSEGG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEAITG+    +L  +DE ++   + LK  + N+V RV  + EE + L     
Sbjct: 690 VAAGVRRIEAITGRSVYEYLNNRDELIEETCNALKTKEDNLVHRVNALVEENKSLTKELH 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +++++       S  ++  VN ++    ++D   LK + D L+ K+QSG++ +  +
Sbjct: 750 DVKAKMSLQSADKLMDSKVEVNGVNLVTAKFEDMDMNSLKEMADNLRDKLQSGVVAISNV 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S + K + ++  T+D++DR  ++ ++ +  AK+ GG G GGRP+MAQ+G  +  K D+A+
Sbjct: 810 S-DSKVNFVVTATKDVIDRGIHSGNIVKEIAKIAGGKG-GGRPNMAQAGATDATKIDEAL 867

Query: 890 AGVASFLK 897
           +     +K
Sbjct: 868 SYACEVIK 875


>gi|291544162|emb|CBL17271.1| alanyl-tRNA synthetase [Ruminococcus sp. 18P13]
          Length = 883

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/908 (35%), Positives = 496/908 (54%), Gaps = 50/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL FF+  GH  + S+SLIP  D +L+  NSGM P K  F GQ  P    VTT
Sbjct: 6   LNELREKFLSFFESKGHTRMDSASLIPQGDNSLLLINSGMAPLKKYFLGQATPPNVRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++ VG+T RH T+FEMLGNFSFG YFK  AI+ AW+  TK  +L   
Sbjct: 66  CQKCIRT----PDIERVGKTARHGTYFEMLGNFSFGDYFKTEAIEWAWEFFTKVLELPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY++VY++D+EA+ +W K  G++ D + R+   DNFW    +GPCGPCSEI+FD+G   
Sbjct: 122 KLYVSVYEQDDEAYDIWIKHIGVAPDHMTRLGKEDNFWEHG-SGPCGPCSEIYFDRGPEK 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +R++E+WNLVF QF    K     +   +IDTGMGLER+A V+Q   
Sbjct: 181 GCGSPDCKVGCECDRFVEVWNLVFSQFNSDGKGHYAEMEHKNIDTGMGLERLACVMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  ++++Q   ++ G+ Y  +    V+ RVI DH+RS++F++ DG+ PANEGRGY
Sbjct: 241 NLFEVDTVQNIMQHICRIAGITYKEDPKKDVSLRVITDHVRSTTFMVGDGVTPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VL+R++RRA  + ++LG  EP +  +   +  E  +AYPEL + K LI + +R E+E F 
Sbjct: 301 VLKRLLRRAARHGKMLGIQEPFLYQVAETVIHENENAYPELAEKKDLICKIIRHEEESFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+G  LL+  L  +  D   +L+G  AFKL DT+G PLD+  +I   RG+  +D   
Sbjct: 361 KTIDKGTELLNMFLDRVSSDSLSMLSGADAFKLSDTYGFPLDLTMEIAAERGIK-VDEDK 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + +E+Q+S ARA        +      +       T+F+GY  +              
Sbjct: 420 FRELMEQQKSMARADRASKVKTSWSNESIADI-SAPKTEFVGYTQM-------------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + +  I   G+ V+    G    ++ D+TPFYAE+GGQ+ DTG  +G 
Sbjct: 465 ---------SCGAKILGIFADGKQVDSIREGDVAALILDRTPFYAESGGQVADTGEIVG- 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + DV+K   G F+H   +E GIL+    +   ID   R  +  NH+A HLL  AL
Sbjct: 515 NGAFAVADVKKLESGHFMHMGSLEDGILKVGDEVSAQIDADRRMSIMRNHTAAHLLQAAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q G  +  +  RFD +H   +TS EL+++ED VN  I + LP+  + M  E
Sbjct: 575 RQVLGDHVHQAGQLVNAEHCRFDFSHFNAMTSEELQAVEDLVNRKIFEALPITMQEMPIE 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY + VRVVS+E       S+  CGGTH+ +T  + L  I+SESS+ 
Sbjct: 635 EARKLGAMALFGEKYGNIVRVVSMEG-----FSTEFCGGTHLDNTSRVGLFKILSESSVA 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHAK 776
           AG+RRIEA+TG           ++L   AS LK+ +   +V R   +  E ++ +     
Sbjct: 690 AGVRRIEAVTGTGVLKSYQEMQQRLHFAASALKLGNPLELVERCTAMIAELKEKEHQIDA 749

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
             +++    +S       +I+ V  +S   +   +  L+ + D ++ ++   I+ +    
Sbjct: 750 LNMKIADSQISGLFENAKEISGVRVISAFFNGTGADMLRQMGDQVKDRLDGNIVAVFAGM 809

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             +K +   V  ++ + +  +A  + +  +  + GG GGGRP  A +G       D+A+A
Sbjct: 810 NGEKGTFYCVCGKEAVKKGAHAGKIVQRVSA-ITGGKGGGRPDSAMAGIGKQYMVDEALA 868

Query: 891 GVASFLKK 898
            + + + +
Sbjct: 869 ALDAIVGE 876


>gi|205830241|sp|Q31PW3|SYA_SYNE7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 876

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/905 (38%), Positives = 505/905 (55%), Gaps = 50/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR TFL+FF+  GH  LPS+SLIP  DPT++ T +GM+PFK IF GQ+       T
Sbjct: 7   SGDQIRETFLKFFEGKGHRRLPSASLIPE-DPTVLLTIAGMLPFKPIFLGQQVAEVPRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F +  
Sbjct: 66  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 122 ERLAVSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPE 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE++NLVFMQ+ +        L K +IDTGMGLERMA VLQ   N
Sbjct: 182 L-GNDGLDLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPN 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQA   +    Y   +     + +VI DHLR+ + LIADG+  +N GRGY
Sbjct: 241 NYETDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G   P    +       M + YP L + +  I+  L  E++RF 
Sbjct: 301 VLRRLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  L           + + G+ AF LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 361 ETLERGEKL--LAELLAAATDQIRGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFE 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR R++A    +   T +     L E+   T+F+GY                   
Sbjct: 418 AAMAAQRQRSQAAHETIDL-TVQGSLDRLAEQIHPTEFVGY------------------- 457

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G   G+ +
Sbjct: 458 ----GDAVATAKVTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV +K  G FVH+  +ERG+L+   S+   ID   RR+   NH+ATHLL  AL  
Sbjct: 514 IVRIEDV-QKESGFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T  EL+ IED +N  IA+    V  +M    A
Sbjct: 573 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 632

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V        S  LCGGTHV++T EI L  I+SE+ + +G
Sbjct: 633 KAKGAVAMFGEKYGAEVRVIDVPG-----VSMELCGGTHVANTAEIGLFKIISEAGVASG 687

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+ G     +L  +D  ++ L+   K     +  RV  + EE +  Q      K 
Sbjct: 688 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 747

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833
           +L +            + D   +   ++ VD+  L++  + LQ+K+   G ++L    +E
Sbjct: 748 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 807

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +++      ++ +   A       AK+ GGGG GGRP++AQ+GG + +K  +AIA  
Sbjct: 808 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGG-GGRPNLAQAGGRDASKLPEAIAAA 866

Query: 893 ASFLK 897
              LK
Sbjct: 867 LDQLK 871


>gi|81299685|ref|YP_399893.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|81168566|gb|ABB56906.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
          Length = 899

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/905 (38%), Positives = 505/905 (55%), Gaps = 50/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR TFL+FF+  GH  LPS+SLIP  DPT++ T +GM+PFK IF GQ+       T
Sbjct: 30  SGDQIRETFLKFFEGKGHRRLPSASLIPE-DPTVLLTIAGMLPFKPIFLGQQVAEVPRAT 88

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F +  
Sbjct: 89  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPA 144

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 145 ERLAVSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPE 204

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE++NLVFMQ+ +        L K +IDTGMGLERMA VLQ   N
Sbjct: 205 L-GNDGLDLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPN 263

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQA   +    Y   +     + +VI DHLR+ + LIADG+  +N GRGY
Sbjct: 264 NYETDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGY 323

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G   P    +       M + YP L + +  I+  L  E++RF 
Sbjct: 324 VLRRLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFL 383

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  L           + + G+ AF LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 384 ETLERGEKL--LAELLAAATDQIRGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFE 440

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR R++A    +   T +     L E+   T+F+GY                   
Sbjct: 441 AAMAAQRQRSQAAHETIDL-TVQGSLDRLAEQIHPTEFVGY------------------- 480

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G   G+ +
Sbjct: 481 ----GDAVATAKVTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 536

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV +K  G FVH+  +ERG+L+   S+   ID   RR+   NH+ATHLL  AL  
Sbjct: 537 IVRIEDV-QKESGFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 595

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T  EL+ IED +N  IA+    V  +M    A
Sbjct: 596 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 655

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V        S  LCGGTHV++T EI L  I+SE+ + +G
Sbjct: 656 KAKGAVAMFGEKYGAEVRVIDVPG-----VSMELCGGTHVANTAEIGLFKIISEAGVASG 710

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+ G     +L  +D  ++ L+   K     +  RV  + EE +  Q      K 
Sbjct: 711 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 770

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833
           +L +            + D   +   ++ VD+  L++  + LQ+K+   G ++L    +E
Sbjct: 771 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 830

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +++      ++ +   A       AK+ GGGG GGRP++AQ+GG + +K  +AIA  
Sbjct: 831 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGG-GGRPNLAQAGGRDASKLPEAIAAA 889

Query: 893 ASFLK 897
              LK
Sbjct: 890 LDQLK 894


>gi|29833392|ref|NP_828026.1| alanyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|41018194|sp|Q827S4|SYA_STRAW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29610515|dbj|BAC74561.1| putative alanyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
          Length = 890

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/924 (36%), Positives = 510/924 (55%), Gaps = 64/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L F+++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFYEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA  +W+   G+ A++I R+   DN+WSM   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYLDDDEAETIWRDKIGVPAERIQRLGKKDNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+       + +    LP+ +IDTG+G+
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTSKDDFEILGDLPQKNIDTGLGM 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +IQ + ++TG++Y   +   V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVIQKATELTGVEYGAAHGSDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVDVVIAMMGQQYPELISDRQRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  +LD  +  +     ++L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTETKASGGQVLPGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T FIGY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAQSKKTGHADLGAYREIADAAGETDFIGYTQTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGILVDGVSSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG   +  G  +++ D QK   G++VH  +V+ G +       ++ID + R+ ++
Sbjct: 511 GQIGDTGRIKVESGAIIEVRDCQKPVPGVYVHKGVVQVGEVTVGAKAQVSIDVRRRKAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +  +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTTVMTDVEQQINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  +   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQIQELVKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    + + +  ++       S   +  +  ++  +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIERFRAEKVLQAAAGLVDSAKDVRGIALVTGQVPDGTTADDLRRLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           +IQ G   ++ L       K   +I   E   +R   A DL R +AK LGGGG GG+P +
Sbjct: 806 RIQGGRPAVVALFTTV-GGKPLTVIATNEAARERGLKAGDLVRAAAKTLGGGG-GGKPDV 863

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ GG N     +AI  V   + +
Sbjct: 864 AQGGGQNPAAIGEAIDAVERLVTE 887


>gi|225377640|ref|ZP_03754861.1| hypothetical protein ROSEINA2194_03291 [Roseburia inulinivorans DSM
           16841]
 gi|225210504|gb|EEG92858.1| hypothetical protein ROSEINA2194_03291 [Roseburia inulinivorans DSM
           16841]
          Length = 886

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/911 (37%), Positives = 512/911 (56%), Gaps = 54/911 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT 
Sbjct: 8   NELRRMYLEFFESKGHLKMNSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTTC 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LTK   L++ R
Sbjct: 68  QKCIRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTKVLGLEEDR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSEIFFD 178
           LY ++Y ED+EAF +W K  G+ A++I R          DNFW     GPCGPCSEI++D
Sbjct: 124 LYPSIYGEDDEAFNIWTKEVGVPAERITRFYRDPETGECDNFWEHG-AGPCGPCSEIYYD 182

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      + +R++E+WN VF QFE   K     L + +IDTGMGLER+A V
Sbjct: 183 RGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELSQKNIDTGMGLERLAVV 242

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +DID  K +     +++G KY  +  + V+ R+I DH+RSS+F+I+DGI+P+N
Sbjct: 243 MQDVDSVFDIDTMKAIRDRVCELSGKKYEVDAMDDVSIRLITDHIRSSTFMISDGIMPSN 302

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  + R+LG     M  L   +  E    YPEL + K  I + L  E
Sbjct: 303 EGRGYVLRRIIRRAARHGRMLGIDGIFMAELAKTVINESKDGYPELEEKKDFILKVLAQE 362

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F KT+D+GL +L+ +   +     ++L+GD AFKLYDT+G P+D+  +IL  +G   
Sbjct: 363 EEKFAKTIDQGLAILEDMEKEMIASGSKVLSGDNAFKLYDTYGFPMDLTSEILEEKGFT- 421

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR+ AR +         +   +   +    T+F+GYD L  +      
Sbjct: 422 IDEDGFKKAMEVQRTTARKNRKTTNYMGADATVYDEIDPSVTTEFVGYDKLETA------ 475

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  +  + EIVE    G+   ++ ++TPFYA  GGQ GD G
Sbjct: 476 -----------------STVTVLTSETEIVEALSDGEIGTIIVEETPFYATMGGQQGDKG 518

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D  K   G   H   +  G++++   + L++D   R +   NHSATHL
Sbjct: 519 VIYTADGTFKVEDTIKLLGGKVGHVGKMTSGMIKSGDKVTLSVDADLRGKTCKNHSATHL 578

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q GS    +  RFD +H + +T+ E+  +E  VND IA +L V T 
Sbjct: 579 LQKALREVLGTHVEQAGSYQDAERTRFDFSHFQAMTAEEIAKVEKIVNDEIAADLEVRTD 638

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  E+A  +GA AL G KY ++VRVVS+     G  S   CGGTHV  TGEI    I+S
Sbjct: 639 VMTVEEAKKTGAMALFGEKYGEKVRVVSM-----GEFSKEFCGGTHVKHTGEIAAFKIIS 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+TG    ++    + +L+  A   K +   +V ++E +  E + L  
Sbjct: 694 ESGVAAGVRRIEALTGDNVFAYYKNIEAELERAAKAAKTTPAALVEKIEHMMAEIKALNA 753

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +   E L        ++  V  ++  ++ VD   L+ + D L+ K+  G+++L
Sbjct: 754 ENESLKSKAAKEALGDVMDQVVEVKGVKLLATSVAGVDMNGLRDLGDQLKGKLGEGVVVL 813

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                + K +++ + TE+ + +  +A +L +  A  +GGGG GGRP+MAQ+GG N     
Sbjct: 814 AS-EADGKVNLVAMATEEAMKKGAHAGNLIKAIAGKVGGGG-GGRPNMAQAGGKNPAGIP 871

Query: 887 QAIAGVASFLK 897
            A+A     L+
Sbjct: 872 DAVAEAKVALE 882


>gi|291563232|emb|CBL42048.1| alanyl-tRNA synthetase [butyrate-producing bacterium SS3/4]
          Length = 884

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/906 (37%), Positives = 512/906 (56%), Gaps = 41/906 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRMFLEFFESKEHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  AW+ LT+   +   
Sbjct: 66  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWAWEFLTECVGIPAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++W +  G+  ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLDDDEAFRIWNEEIGIPKERIYRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 P-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       EG+R++E+WN+VF QF          L + +IDTGMGLER+A V Q+  +
Sbjct: 181 GTGPEDVMGGEGDRFMEVWNVVFSQFNNDGHGNYTDLIQKNIDTGMGLERLAVVCQDVAS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D  + L+     +   +YE ++   V+ R+I DH++S +F+ +DGI+P+NEGRGYV
Sbjct: 241 LFDVDTNRALMDEVGALAHCRYEEDDKKDVSLRIIADHVKSCTFMASDGIMPSNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            RR++RRA  + R+LG     M  L   +       YPEL + K +I   +  E+ERF  
Sbjct: 301 FRRLLRRAARHGRILGIEGNFMTKLAQVVIDLSKDGYPELEEKKDMILRVIDQEEERFAN 360

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+GL +L  +   +     ++L G+ AFKLYDT+G P+D+ ++IL  +GL  +D   F
Sbjct: 361 TIDKGLEILADLEKDMEAKGTKVLAGEDAFKLYDTYGFPIDLTKEILDDKGLT-VDEEGF 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++A++ QR  AR+          + I+  L +    + F GYD L     +    ++   
Sbjct: 420 HKAMQVQRETARSARKTTNYMGRDDIYQKL-DASLTSAFTGYDKLEDESKVTALVRLAAD 478

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +                  + EI +    G+K  V+  +TPFY   GGQ+GD G      
Sbjct: 479 EEG----------------EDEIADAVTDGEKACVITSETPFYGTMGGQVGDRGVIESAN 522

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++ D      G   H   +  G+ +T  ++ L ++ +NR  +  NHSATHLLH AL 
Sbjct: 523 GKFEVEDTIHLQGGKIGHIGHMVSGMFQTGETVTLKVNEENRSLIGRNHSATHLLHKALR 582

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           T+LG+HV Q GS +T D LRFD TH   ++  E+K +E+ VN  I   LPVVT +M+ ED
Sbjct: 583 TVLGTHVEQAGSLVTRDRLRFDFTHFSAMSQDEIKEVENIVNKEIRAALPVVTDVMSLED 642

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  +GA AL G KY D+VRVV +     G  S+ LCGGTHV +T EI    I+SE+ + A
Sbjct: 643 AKKTGAMALFGEKYGDKVRVVRM-----GDFSTELCGGTHVKNTSEISCFKILSEAGVAA 697

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+T      H    +++L + A+  K +  ++  ++E + EE + L   + K K
Sbjct: 698 GVRRIEALTSDGLIHHYENVEQELHAAAAAAKSTPADLTTKIESMMEEIKTLHSENEKLK 757

Query: 779 LQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +L  E          ++  V  ++     VD   L+++ D L++K+  G++++  +  +
Sbjct: 758 SKLAKEAMGDVMDQVQEVKGVKVLAVRADGVDMNGLRNLGDQLKEKLGEGVVVIASVL-D 816

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +++  VT++   +  +A +L +  A ++GGGG GGRP+MAQ+GG        A+A V
Sbjct: 817 GKVNLMAAVTDEAQKKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKKPEGVADALAKV 875

Query: 893 ASFLKK 898
           A  + +
Sbjct: 876 AEVVSE 881


>gi|289450565|ref|YP_003475604.1| alanine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185112|gb|ADC91537.1| alanine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 886

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/907 (37%), Positives = 500/907 (55%), Gaps = 45/907 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  LPS SL+P  DP+++  N+GM P K  F G E P  + VTT
Sbjct: 6   LNEIREKYLSFFESKGHLRLPSFSLVPQKDPSILLINAGMTPLKPYFIGTEVPPCKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++ VG T+RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L + 
Sbjct: 66  CQKCIRT----PDIERVGYTSRHGTFFEMLGNFSFGDYFKAEAISWAWEFITEVLKLPEE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLYITVY +D+EA+  W +  G++ +KI R+   DNFW    TGPCGPCSEI FD+G  +
Sbjct: 122 RLYITVYKDDDEAYDYWHQKIGVAENKIYRLGKEDNFWEHG-TGPCGPCSEIHFDRGPNV 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R++E WNLVF QF++Q       +   +IDTG GLER A ++Q   
Sbjct: 181 GCGRPDCHVGCDCDRFVEFWNLVFSQFDRQEDGTYLPMVHKNIDTGGGLERFACIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  + ++ A  ++  + Y  ++   V  RVI DH+RS++ +I+DG+LP+NEGRGY
Sbjct: 241 NLFEVDTVRRILDAVCKIAKVHYGNDHMADVAIRVITDHIRSTTMMISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  Y RLLG     +  LLP +  E   AYPEL + +  I   + +E++RF 
Sbjct: 301 VLRRLLRRAARYGRLLGIDGLFLHDLLPVVVQESCGAYPELKEREDYILRVIETEEKRFD 360

Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+ +G  LLDG +  +       L+GDV FKL+DT+G PLD+ ++I   +G   +D   
Sbjct: 361 KTVKQGSQLLDGYINEAKKAGSGELSGDVVFKLHDTYGFPLDLTREIAAEQG-ISVDEAG 419

Query: 418 FNQALEEQRSRARAHSL-GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F + ++ Q+  ARA      GS        +  E    TQF+GY        +       
Sbjct: 420 FKKNMQRQKDEARAALKAKGGSAWAAGCLPAEVEHKNPTQFVGYSEFSAKGKLLYIISSD 479

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
               PI                  ++  A     V ++ D+TPFYA  GGQ+GD G   G
Sbjct: 480 EAGEPI------------------LLPMAGVDADVILITDRTPFYATGGGQVGDIGTITG 521

Query: 537 DGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           +   ++++ D  K AEGIF+HH  V  G L   M L L ++   R  +  NHSATHLLH 
Sbjct: 522 EHGLKVEVKDTTKTAEGIFLHHCHVIAGSLEPGMELDLAVNRPVRMDIMRNHSATHLLHK 581

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL T+LG+HV+Q GS +  + LRFD  H KP T+ EL+ IE  VN  I  N   VT +M 
Sbjct: 582 ALRTVLGTHVTQAGSLVNAEHLRFDFHHMKPCTAEELRQIEAEVNRAILANYQSVTEVMP 641

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A   GA AL   KY D VRVVS+     G +S   CGGTH+S T ++ + +IVSE S
Sbjct: 642 MAEAKKKGAMALFDEKYGDMVRVVSM-----GDYSVEFCGGTHLSETSQVGIFHIVSEGS 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +GIRRIEAITG  A   L    +     A  LK+   ++  R+ ++  + +       
Sbjct: 697 VASGIRRIEAITGSAALRWLQDLQKTTAEAADMLKIKVADLPERIAQLQNDLKAETKKFQ 756

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L             + A +N+++  +S     +L+++ ++L+ ++    ++L G 
Sbjct: 757 ALQSELAKAQAAELKNKAREAAGINYLAAAVSVDGVDDLRAMAESLRSQLAPAAVVL-GA 815

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K + + + + + + +   A +L + +A + GGGG GGRP MAQ+GG +  K  +A+
Sbjct: 816 EINGKLNFVAMASPEAVKKGVKAGNLVKAAASISGGGG-GGRPDMAQAGGKDVAKLPEAL 874

Query: 890 AGVASFL 896
           A     +
Sbjct: 875 AAAEQEI 881


>gi|289423561|ref|ZP_06425362.1| alanine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289156063|gb|EFD04727.1| alanine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 878

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/908 (37%), Positives = 522/908 (57%), Gaps = 49/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F EFF+  GH +  S SL+P ND +L+  NSGM P KN F+G E P  + +
Sbjct: 4   MGLNEIRKNFTEFFRSKGHYIAKSHSLVPSNDKSLLLINSGMAPLKNYFSGVETPPKERM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           +TVQKC+R G    D++NVG T RH TFFEM+GNFSFG YFK+ AI  AW+ +T+   L 
Sbjct: 64  STVQKCIRTG----DIENVGVTARHATFFEMMGNFSFGDYFKKDAITWAWEFITQWLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++++TVY+ D+EA+ LWK + G   ++I+R+  +DNFW +   GPCGPCSEI+FD+GE
Sbjct: 120 EEKIWVTVYESDDEAYDLWKNMIGFPEERIVRLGKDDNFWEIG-LGPCGPCSEIYFDKGE 178

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G        + +R++E WNLVF QF++Q       L   +IDTGMGLERMA V+Q+
Sbjct: 179 KYGCGCEDCKPGCDCDRFLEFWNLVFTQFDRQEDGSYGDLENKNIDTGMGLERMACVMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  + ++Q   ++ G  Y  +  N  + R+I DH+RS SF++ADGILP+NEGR
Sbjct: 239 VDTIFEVDTIQEVLQNVCKIAGKTYGNDPKNDKSIRIITDHIRSVSFMVADGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG     +  L+  +    G AYPEL++ +  I++ +  E+E+
Sbjct: 299 GYVLRRLLRRAARHGKLLGIEGGFLNDLVDVVIKTSGEAYPELVEKEAYIKKVIGIEEEK 358

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F + L +GL +L              ++G++AFKLYDT+G PLD+  +IL   G+  +D 
Sbjct: 359 FAEALHQGLEILKSYTEETKDAGKTHISGEMAFKLYDTYGFPLDLTMEILEDEGMT-VDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++ Q+ RARA          ++   +  E   +++F GY  L+           
Sbjct: 418 EGFEAEMQAQKDRARAARGNREGDAWKEDPLTRLED-ASSEFDGYKNLKMD--------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S VKAIV   E+V+    G + E++ D T FY   GGQ+GD G   
Sbjct: 468 --------------SKVKAIVADNELVDSIEEGCEAELILDTTTFYPNGGGQVGDKGTIE 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ D  K A     H   +  G L+    +  +++ + R   + NHSATHLLH 
Sbjct: 514 SDIGVFEVVDTIKGANSSIKHIGRLVSGSLKLGDLVATSVNKELRMDAARNHSATHLLHK 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL T+LG HV+Q GS + PD LRFD TH + IT  +L  IE+ VND + +++P+   +MN
Sbjct: 574 ALKTVLGEHVNQAGSLVAPDRLRFDFTHFESITKDQLLEIEEMVNDFVLESMPITAEVMN 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A   GA AL G KY + VRVV++     G  S  LCGGTH+ +T ++ L  IVSES 
Sbjct: 634 INAAKEMGATALFGEKYGENVRVVTM-----GDCSIELCGGTHLDNTAQVGLFKIVSESG 688

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEAITG+     +   D  + S+   LK  + N+  R + I EE + L+    
Sbjct: 689 VAAGVRRIEAITGRSVYQSIKDTDRLVASVVDILKTREDNLFERAKTIVEENKALEKELQ 748

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K ++++E+      S  +I  VN +++    +D   L+   D L+ K++SG+++L  +
Sbjct: 749 AIKAKMSMENADSVLDSKIEIKGVNLITNRYEGMDMDTLRQAADQLRDKLESGVVVLANV 808

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K +++   +++ +D+  +A ++ R  AK+ GG G GGRP+MAQ+G  + +K D+A+
Sbjct: 809 T-DGKINIVATASKEAIDKGAHAGNIVREVAKIAGGKG-GGRPNMAQAGASDISKLDEAL 866

Query: 890 AGVASFLK 897
           +     ++
Sbjct: 867 SAAKEIVE 874


>gi|190571072|ref|YP_001975430.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019592|ref|ZP_03335398.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357344|emb|CAQ54775.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995014|gb|EEB55656.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 860

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/902 (44%), Positives = 559/902 (61%), Gaps = 54/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F++FF  N HE +PSS LIP +DPTLMFTN+GMV FKNIFTG +K   +  
Sbjct: 1   MKLNEIRERFIKFFVNNNHEQVPSSPLIPEHDPTLMFTNAGMVQFKNIFTGTQKTEMKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG T+RHHTFFEMLGNFSFG YFKE AI+ AW  +T+E  LD
Sbjct: 61  VSSQKCLRAGGKHNDLENVGYTSRHHTFFEMLGNFSFGDYFKETAIEFAWKFITEELSLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL ITVY  D+EA+++W+KISG S DKIIRITT+DNFWSM  TGPCGPCSEIF+D G 
Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSDDKIIRITTDDNFWSMGNTGPCGPCSEIFYDHG- 179

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                   +  E +R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   
Sbjct: 180 ------NSALHEDDRIVEIWNLVFMEFNKDEEGNLQKLPKKCIDTGMGLERIAAVMQNVH 233

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF  L+  S++  G      N V H++I DHLR+++FLIA+G+LP NEGR YVL
Sbjct: 234 DNYDIDLFSALVSKSQEYCGNT---ENKVAHKIIADHLRAAAFLIAEGVLPGNEGRNYVL 290

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCT-----EMGSAYPELIQAKLLIEETLRSEDE 356
           RR++RRA  Y  LLGY + L+  + PAL        MG AYPELI+AK LIE TL+SE+E
Sbjct: 291 RRLIRRAARYIHLLGYNDSLLNLVFPALIDGTSLAYMGDAYPELIRAKSLIETTLKSEEE 350

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            F  TL +G+ LLD   + L   + L+G+ AFKLYDT+G PLDI  DIL  R     D  
Sbjct: 351 NFKDTLMKGINLLDKFTADLKSGDTLSGESAFKLYDTYGFPLDITLDILKER-KINFDQK 409

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A++EQ+ RARA+  G G  + E++WF+L +++G T+F+GY+               
Sbjct: 410 GFDNAMKEQKERARANWTGSGEKSVEQVWFNLIDQFGKTEFVGYERDEVKD--------- 460

Query: 477 CQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        + V AI+  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I
Sbjct: 461 -------------ATVLAIISSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGNFI 507

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                    +   K   +++H  IVE G +R   ++  +I+ + R+ L  NHSATHLLH 
Sbjct: 508 KSDGSTLTVENTNKINDLYLHRCIVESGSVRKGDTVTASINKKRRQDLRRNHSATHLLHF 567

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV+Q GS + P+ LRFD +H+KP+T  +L S+ED VN +I +NL   T++  
Sbjct: 568 ALRKILGDHVTQKGSLVAPNRLRFDFSHNKPVTQDQLSSVEDIVNSLIRENLSTSTKVQG 627

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++AI  GA AL G KY D VRVV +        S  LCGGTHV  TGEI L  I +E S
Sbjct: 628 MDEAIDEGAMALFGEKYGDNVRVVKIGD------SKELCGGTHVERTGEIGLFKIAAECS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + + +RRIEA+TGQ A +++   +  LK +A  +K     ++ R+  + +E ++ ++   
Sbjct: 682 VASRVRRIEALTGQEAINYVRNNEISLKKVAECVKAPVNEIISRLSILSQERKEFEVKIK 741

Query: 776 KR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
              K  ++VE +   +I  +NF+SH  + V    ++     LQ++    +I  + I K+ 
Sbjct: 742 NLYKKLISVETVKSTEINGINFVSHTFNNVPGSIIREFA--LQQQKPKTVIAFMVIEKD- 798

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  +++ V++DL ++ NA +L     +       GG   +AQ  G + NK D AI  + S
Sbjct: 799 KTVLIVKVSKDLTNKINAKELVSTLTRRDC----GGNAELAQ-TGCDNNKIDDAITAIHS 853

Query: 895 FL 896
            +
Sbjct: 854 KI 855


>gi|82751218|ref|YP_416959.1| alanyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|123547858|sp|Q2YT60|SYA_STAAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|82656749|emb|CAI81178.1| alanyl-tRNA synthetase [Staphylococcus aureus RF122]
          Length = 876

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/914 (36%), Positives = 506/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK    A+ F+GYD        
Sbjct: 414 LK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYD-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D   + +++V K   G  +H   V+ G +    ++   ++  +RR +  NHSA
Sbjct: 508 DTGIVYNDNFEIAVSEVTKAPNGQNLHKGAVQFGQVNVGATVSAEVNQNDRRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S +KV   + V+ ++ ++ +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVIDKLTQLQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     +   +   ++K ++S MD  + K+Q  
Sbjct: 743 ALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L +   A DL +  A ++  G GGGRP MAQ GG    
Sbjct: 803 IIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIVS-GKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              ++++ +  ++K
Sbjct: 861 NISKSLSFIKDYIK 874


>gi|297198338|ref|ZP_06915735.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197714390|gb|EDY58424.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 890

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/923 (36%), Positives = 509/923 (55%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  RL+ITVY +D+EA ++W ++ G+  ++I R+   DN+WSM   GPCGPCSEI 
Sbjct: 116 GYGLEADRLWITVYKDDDEAERIWHEVVGVPKERIQRLGMKDNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+       N +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKDNFEILGELPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I+ + ++TG+ Y   +    + RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVIKKATELTGVAYGDAHDSDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P+++ L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVLDLVDTVIAMMGQQYPELVTDRERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+  F KTL  G  +LD  +  +     ++L GD AF L+DT G P+D+  ++  
Sbjct: 355 KVAVAEENAFLKTLKAGTNILDTAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT-EKIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A + G  +G      + ++ ++ G T+F+GY     
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAQGKKTGHAGAGAYRAIADQAGETEFLGYSDTES 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGILVDGASSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG   +  G  ++I D QK   G++VH  +V+ G +         ID + R  ++
Sbjct: 511 GQIGDTGRIKVDSGAVIEIRDCQKPVPGVYVHKGVVQFGEVTVGAKAHAAIDNRRRTAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTSQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQK 818
            + +  +    K + +  ++  +       DV  ++     +       +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGIAVVTGQVPDGTTPDDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   ++ L  ++  K  +V+            A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIQGGRAAVVALFTVNNGKPLTVIATNEPARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N     +A+  V   + +
Sbjct: 865 QGGGQNPAAIGEAVDAVERTVGE 887


>gi|315282412|ref|ZP_07870831.1| alanyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313613946|gb|EFR87671.1| alanyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 864

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/901 (38%), Positives = 508/901 (56%), Gaps = 56/901 (6%)

Query: 14  FFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGK 73
           FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    +   QK +R    
Sbjct: 1   FFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMANAQKSIRT--- 57

Query: 74  HNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYD 131
            ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D  +LY+TVY 
Sbjct: 58  -NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPKWIGFDPDKLYVTVYP 116

Query: 132 EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP--- 188
           EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G           
Sbjct: 117 EDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIFYDRGPSFGDDASDPE 173

Query: 189 -GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                E ERY+EIWNLVF QF          LPK +IDTGMGLERM +++Q+   N++ D
Sbjct: 174 LYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSIIQDAPTNFETD 233

Query: 248 LFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           LF  +I+  EQ+ G+KY  +  N V  +VI DH+R+ +F I DG LP+NEGRGY+LRR++
Sbjct: 234 LFMPIIREVEQIAGVKYGQKQENDVAFKVIADHIRTVAFAIGDGALPSNEGRGYILRRLL 293

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E+ERF +TL+ G
Sbjct: 294 RRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTEEERFHETLNEG 353

Query: 366 LVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L+ +L +     ++++ G   FKLYDT G P+++ ++     GL  +D   F   ++
Sbjct: 354 LAILETILKNAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK-VDHAGFEAEMK 412

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR RAR+    + S   +     L      ++F+GY+                      
Sbjct: 413 EQRDRARSARADVKSMQVQGEL--LANLTEKSEFVGYNTTEHV----------------- 453

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S +  ++Q   +V+E  +G++ +V+F +TPFYAE+GGQ+ D G    +     +
Sbjct: 454 ------SEILYLIQNDTLVDEVAAGEEAQVIFKETPFYAESGGQVADKGTIESETGLAYV 507

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHLLH AL   LG 
Sbjct: 508 EDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLLHRALKDTLGE 567

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV   M   +A   G
Sbjct: 568 HVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEEMPIAEAKELG 627

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVSE+ I AG RRI
Sbjct: 628 AMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVSETGIGAGTRRI 682

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG+ A   +  Q+  LK  A+ LK +      +VE++  + R+++  +     +L  
Sbjct: 683 EAVTGKEAYRFVTEQENTLKHAANLLKTTTKETPQKVEQLQADLREVKRENESLLSKLAS 742

Query: 784 EDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
              +       +I  V  ++  ++  D  +L+  +D  + K   G+++L  +  + K ++
Sbjct: 743 AASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGVLVLGAVQGD-KVNL 801

Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N  +   A+  V++++K
Sbjct: 802 ISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELGTALDYVSTWVK 860

Query: 898 K 898
           +
Sbjct: 861 E 861


>gi|329767041|ref|ZP_08258569.1| alanyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328837766|gb|EGF87391.1| alanyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 873

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/913 (36%), Positives = 514/913 (56%), Gaps = 57/913 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+FF + GH++ PS+SL+P +DPTL++ NSG+   K  F G+E P  
Sbjct: 1   MKQLTSTQIRRMYLDFFVEKGHKIEPSASLVPVDDPTLLWINSGVATLKKYFDGREIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  A+  AW+ LT  K
Sbjct: 61  PRITNSQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKNEAVPWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L++ +L +T++ ED EA+ LW  + GL  D+IIRI    NFW + E GP GP +EIF
Sbjct: 117 WLGLEKEKLSVTIHPEDTEAYDLWHNVIGLPEDRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WN+VF Q+          LP  +IDTGMGLER
Sbjct: 174 YDRGEDADTWSPKEEMYPGGENDRYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           + +VLQ+   N+D DLF  +I+  E+++G KY       V  +VI DH+R+ +F IADG 
Sbjct: 234 IVSVLQDVPTNFDTDLFIPIIREIEKLSGAKYGVNAEQDVAFKVIADHIRTVAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++LG  +  M  L   +   M   YP + ++   +++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLGLNKSFMYKLTDVVAEIMEDYYPNVKESANFVKDV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +  E++RF +TL+ G  +L+ +   +    ++++G  AFKLYDT G P+++ ++     G
Sbjct: 354 ILKEEDRFHETLNEGEAILNNIAKEVKDTTKVISGKDAFKLYDTFGFPIELTEEYAEELG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +DI  FN+ +E+Q+ RAR+      S   +   ++     G ++F GY  L      
Sbjct: 414 LT-VDIDGFNEEMEKQKERARSSRQEDSSMQVQSDLYN--RIVGDSEFTGYTKLTD---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                 + AIV +   ++E     + V+VVFD+TPFYAE+GGQ+
Sbjct: 467 -------------------EGKLLAIVDKDDNLLENYKGEENVKVVFDKTPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  + +G + ++ DV+K  +   +H   V  G L       L +D   R  +  NH+
Sbjct: 508 ADRGLVLAEGFKAEVIDVKKLPDKRHIHLVKVLEGELVVGKEYKLEVDRAYRLNIEKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL+ AL   +GSH+ Q GS +T + LRFD+TH  P+T  E++ +E  VN  I   L 
Sbjct: 568 ATHLLNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWNALE 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + T  M   +A   GA AL G KY D VRVVS+     G +S  LCGGTH +++ E+ + 
Sbjct: 628 IKTEEMPIAEARKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNANSAEVGIF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES + AG+RRIEA+TG+ A  +L  Q+E L+S+    K +  NVV +V  +  E +
Sbjct: 683 KIVSESGVAAGVRRIEALTGKAAYEYLREQEETLRSVEKLTKANVSNVVEKVSGLQSEIK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           KL       + ++   +L     +  ++  VN ++ ++   +   LK ++D  + K+++ 
Sbjct: 743 KLAKEKESLQQKIANAELNNLVNNIKEVNGVNVLTSVVESENMNHLKQLVDNAKSKLENY 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I    +  E K + ++ V + + D++NA  L  + A V   G GGGRP MAQ+G  N +
Sbjct: 803 VIAFASV-NEDKVNFVVAVDKAITDKYNAGKLVNVLATVC-DGRGGGRPDMAQAGAKNKD 860

Query: 884 KADQAIAGVASFL 896
             D+A   + + +
Sbjct: 861 NIDKAFEELLANI 873


>gi|239932415|ref|ZP_04689368.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291440781|ref|ZP_06580171.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291343676|gb|EFE70632.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 889

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/921 (37%), Positives = 505/921 (54%), Gaps = 63/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSAQDKG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA ++W ++ G+  ++I R+   DNFW M   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYQDDDEAEQIWHEVVGVPKERIQRLGKKDNFWDMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFIL----PKMSIDTGMGLE 231
           +D+G    G   G +   ERY+EIWNLVFMQ+E+ +   + + +    P  +IDTG+GLE
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGPGKDYPILGDLPSKNIDTGLGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289
           R+A +LQ   N Y+ID    +I  + ++TG++Y       V+ RV+ DH+R+S  LI DG
Sbjct: 235 RLAMILQGVQNMYEIDTSMAVIDKATELTGVRYGDAQASDVSLRVVTDHMRTSVMLIGDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPELI  +  IE+
Sbjct: 295 VTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELITDRERIEK 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +E+  F KTL  G  +LD  +S        +L GD AF L+DT G P+D+  ++   
Sbjct: 355 VALAEENAFLKTLKAGTNILDTAVSDTKAAGSTVLPGDKAFLLHDTWGFPIDLTLEMAAE 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGS 466
           +GL+ +D   F + ++EQR RA+A +    +G  +   +  + ++ GAT FIGY    G 
Sbjct: 415 QGLS-VDEEGFRRLMKEQRERAKADARAKKTGHADLGAYREIADRAGATDFIGYTHTEG- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  I+  G     A  G +VE+V D+TPFYAE GG
Sbjct: 473 ----------------------ESTVVGILVDGVPSAAATEGDEVEIVLDRTPFYAEGGG 510

Query: 527 QLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+GDTG      G  +++ D QK   G++VH  +V+ G +  +     +ID + R  ++ 
Sbjct: 511 QIGDTGRIRTDSGAVIEVRDCQKPVPGVYVHKGVVQVGEVTVDAKAHASIDARRRTAIAR 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSATHL H AL   LG   +Q GS   P   RFD      +    +  +E  +N+++A+
Sbjct: 571 AHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPQTVMLDVEQKINEVLAR 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++
Sbjct: 631 DLDVRADVMGIDEARKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQL 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ ++ ESSI +G+RRIEA+ G  A   L  +   +  L   LK     +  +V  +  
Sbjct: 686 GLVKLLGESSIGSGVRRIEALVGVDAYHFLAREHTVVNQLTELLKGRSEELPEKVSAMLG 745

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQKK 819
             +  +    K + +  ++  +       DV  ++     +     + +L+ ++  ++ +
Sbjct: 746 RLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGVAVVTGQVPDGTTADDLRKLVLDVRGR 805

Query: 820 IQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           IQ G   ++ L       K   +I   E   +R   A DL R +AK LGGGG GG+P +A
Sbjct: 806 IQGGRAAVVALFTTVN-GKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 863

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG N     +A+  V   +
Sbjct: 864 QGGGQNPAAIGEAVDAVERLV 884


>gi|56750673|ref|YP_171374.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|56685632|dbj|BAD78854.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
          Length = 892

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/905 (38%), Positives = 505/905 (55%), Gaps = 50/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR TFL+FF+  GH  LPS+SLIP  DPT++ T +GM+PFK IF GQ+       T
Sbjct: 23  SGDQIRETFLKFFEGKGHRRLPSASLIPE-DPTVLLTIAGMLPFKPIFLGQQVAEVPRAT 81

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F +  
Sbjct: 82  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPA 137

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 138 ERLAVSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPE 197

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE++NLVFMQ+ +        L K +IDTGMGLERMA VLQ   N
Sbjct: 198 L-GNDGLDLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPN 256

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQA   +    Y   +     + +VI DHLR+ + LIADG+  +N GRGY
Sbjct: 257 NYETDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGY 316

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G   P    +       M + YP L + +  I+  L  E++RF 
Sbjct: 317 VLRRLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFL 376

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  L           + + G+ AF LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 377 ETLERGEKL--LAELLAAATDQIRGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFE 433

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR R++A    +   T +     L E+   ++F+GY                   
Sbjct: 434 AAMAAQRQRSQAAHETIDL-TVQGSLDRLAEQIHPSEFVGY------------------- 473

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G   G+ +
Sbjct: 474 ----GDAVATAKVTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 529

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV +K  G FVH+  +ERG+L+   S+   ID   RR+   NH+ATHLL  AL  
Sbjct: 530 IVRIEDV-QKESGFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 588

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T  EL+ IED +N  IA+    V  +M    A
Sbjct: 589 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 648

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V        S  LCGGTHV++T EI L  I+SE+ + +G
Sbjct: 649 KAKGAVAMFGEKYGAEVRVIDVPG-----VSMELCGGTHVANTAEIGLFKIISEAGVASG 703

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+ G     +L  +D  ++ L+   K     +  RV  + EE +  Q      K 
Sbjct: 704 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 763

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833
           +L +            + D   +   ++ VD+  L++  + LQ+K+   G ++L    +E
Sbjct: 764 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 823

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +++      ++ +   A       AK+ GGGG GGRP++AQ+GG + +K  +AIA  
Sbjct: 824 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGG-GGRPNLAQAGGRDASKLPEAIAAA 882

Query: 893 ASFLK 897
              LK
Sbjct: 883 LDQLK 887


>gi|262277414|ref|ZP_06055207.1| alanyl-tRNA synthetase [alpha proteobacterium HIMB114]
 gi|262224517|gb|EEY74976.1| alanyl-tRNA synthetase [alpha proteobacterium HIMB114]
          Length = 892

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/916 (43%), Positives = 581/916 (63%), Gaps = 47/916 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +   R TF  FF+KN H+++ SSSLIP NDPTLMF+NSGMV FKN+FTG EK  Y   
Sbjct: 3   KTLRDTRETFKNFFKKNDHKVISSSSLIPQNDPTLMFSNSGMVQFKNVFTGVEKRDYNRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+L+TK+F L 
Sbjct: 63  TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEQAIAYAWELITKDFALP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L +TV+ ED+EA+ LWKKI+G S DKII+I T+DNFWSM ETGPCGPCSEIF+D GE
Sbjct: 123 KNKLCVTVFSEDQEAYDLWKKIAGFSEDKIIKIPTSDNFWSMGETGPCGPCSEIFYDHGE 182

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS  E+G+R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLERMA VLQ  
Sbjct: 183 HLFGGPPGSKDEDGDRFIEIWNLVFMQYEQISKDKRVNLPKPSVDTGMGLERMAAVLQGT 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY IDLF+ L+  S  +T  +   + I +HRVI DHLR+S FLIADG++P+NEGRGYV
Sbjct: 243 HDNYQIDLFQKLVDLSADITKTRINNDTIPSHRVISDHLRASCFLIADGLMPSNEGRGYV 302

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAM +A  LG  + ++  ++  L  EM S Y EL +AK LI+ET+ +E+E+F  
Sbjct: 303 LRRIMRRAMRHANTLGSKDHVLSKMIDHLIKEMSSEYNELDRAKDLIKETITNEEEKFQS 362

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            L  G+ ++    + +  +  L+G+VAFKLYDT+G PLD+ +D      +  +D   FNQ
Sbjct: 363 MLSNGMKIIHDEKNKIK-NNTLSGEVAFKLYDTYGFPLDLTEDYFKPLKIK-VDTEKFNQ 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E+++  AR    G GS + +KIWF LK+++G+T+F+GY                    
Sbjct: 421 LMEKRKQEARKSWKGSGSDSIDKIWFDLKDRHGSTEFVGY-------------------- 460

Query: 481 PIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
               +    + V +IV Q GE + +A    K++++ +QT FYAE+GGQ+GD+G    +  
Sbjct: 461 ---SSEKTEAKVNSIVNQDGEEILKAKEKDKIKIITNQTCFYAESGGQVGDSGIIKTETG 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QK    +F+H   V+ G +       L I+ + R  +  NHSATHLLH AL  
Sbjct: 518 TAEVEDTQKFFGSLFIHIGFVKEGYIEKNQDSYLEINLERRENIKSNHSATHLLHAALRE 577

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD ++SK I S + K I   VN  I +N  V+TR+M+ E A
Sbjct: 578 ELGNHVAQRGSYVGPDRLRFDFSYSKQINSEQQKKINSRVNHFINKNDKVITRLMSPEKA 637

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I  GA AL G KY + VRVVS+   +  + S  LCGGTHV +TG+I    I++ESSI +G
Sbjct: 638 IKEGAMALFGEKYGEEVRVVSMGKNNDKIFSLELCGGTHVENTGKIGQFSIINESSIASG 697

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-----QLI- 773
           +RRIEA+ G   +++L  ++   +      K+    ++ +++++  +Y+       +   
Sbjct: 698 VRRIEALRGDELKTYLENKNLSKQENLKKNKLKFEEIINQIKKLKGDYKNFSEYQNEKQI 757

Query: 774 ------HAKRKLQLNVEDLSCHKI-----ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                   K + +  ++D + + I       +  ++ I+  + SK+++ ++D   K   +
Sbjct: 758 NDALNYLNKLRAKNILDDKNKNIITSNSKNGIEIINQILIGLSSKDIRGLVDQGTKTKDN 817

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG--P 880
            II ++ + +++K S+ + ++++L +R++A + A+  +  LGG GGGGR   AQ+GG   
Sbjct: 818 TIIFIISL-EDQKTSIGVGISQNLTNRYDAANFAKKISIYLGGKGGGGRKDFAQAGGGTS 876

Query: 881 NGNKADQAIAGVASFL 896
              KA +A+  ++  +
Sbjct: 877 TLEKAKEALNKLSEEI 892


>gi|205371826|sp|Q5N4B5|SYA_SYNP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 876

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/905 (38%), Positives = 505/905 (55%), Gaps = 50/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR TFL+FF+  GH  LPS+SLIP  DPT++ T +GM+PFK IF GQ+       T
Sbjct: 7   SGDQIRETFLKFFEGKGHRRLPSASLIPE-DPTVLLTIAGMLPFKPIFLGQQVAEVPRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F +  
Sbjct: 66  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 122 ERLAVSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPE 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE++NLVFMQ+ +        L K +IDTGMGLERMA VLQ   N
Sbjct: 182 L-GNDGLDLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPN 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQA   +    Y   +     + +VI DHLR+ + LIADG+  +N GRGY
Sbjct: 241 NYETDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G   P    +       M + YP L + +  I+  L  E++RF 
Sbjct: 301 VLRRLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  L           + + G+ AF LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 361 ETLERGEKL--LAELLAAATDQIRGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFE 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR R++A    +   T +     L E+   ++F+GY                   
Sbjct: 418 AAMAAQRQRSQAAHETIDL-TVQGSLDRLAEQIHPSEFVGY------------------- 457

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G   G+ +
Sbjct: 458 ----GDAVATAKVTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV +K  G FVH+  +ERG+L+   S+   ID   RR+   NH+ATHLL  AL  
Sbjct: 514 IVRIEDV-QKESGFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T  EL+ IED +N  IA+    V  +M    A
Sbjct: 573 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 632

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V        S  LCGGTHV++T EI L  I+SE+ + +G
Sbjct: 633 KAKGAVAMFGEKYGAEVRVIDVPG-----VSMELCGGTHVANTAEIGLFKIISEAGVASG 687

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+ G     +L  +D  ++ L+   K     +  RV  + EE +  Q      K 
Sbjct: 688 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 747

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833
           +L +            + D   +   ++ VD+  L++  + LQ+K+   G ++L    +E
Sbjct: 748 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 807

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +++      ++ +   A       AK+ GGGG GGRP++AQ+GG + +K  +AIA  
Sbjct: 808 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGG-GGRPNLAQAGGRDASKLPEAIAAA 866

Query: 893 ASFLK 897
              LK
Sbjct: 867 LDQLK 871


>gi|46447153|ref|YP_008518.1| alanyl-tRNA synthetase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81626678|sp|Q6MB06|SYA_PARUW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|46400794|emb|CAF24243.1| probable alanyl-tRNA synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 878

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/909 (37%), Positives = 509/909 (55%), Gaps = 47/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  FLE+F+K+ H+++ SSS++P +DPTL+F N+GM  FK++F G+    Y  
Sbjct: 1   MLTQS-IRRQFLEYFKKHQHQIVSSSSVLPHDDPTLLFNNAGMNQFKDVFLGKSYRDYNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+R GGKHNDL+NVG T+RH TFFEMLGNFSFG YFK +AI+ AW++ T+ F  
Sbjct: 60  AATSQKCIRVGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKTQAIRFAWEVSTQVFGF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  R++ TV+ ED+E F+LW +   + A++I R    DNFW+M +TGPCGPCSE+ +D+G
Sbjct: 120 EPERIWPTVFREDDETFELWTQY--VPAERITRFGEKDNFWAMGDTGPCGPCSELLYDRG 177

Query: 181 ECIPGG-LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                   P     GER++E WNLVFMQF +Q    +  LPK SIDTG GLER+  +   
Sbjct: 178 SDYGNATKPSEDSSGERFLEFWNLVFMQFNRQTSGVQNPLPKPSIDTGAGLERVINLKMG 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGR 297
             + ++ D+ + +I   E ++G+ Y   +  +   RVI DHLR  SF IADG+ P+N  R
Sbjct: 238 VNSVFETDILRSIIAQIELLSGIAYHPQDQQSAAFRVIADHLRCLSFAIADGVQPSNVDR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+++RRA+ Y R L   +P +  +LP L + MGS YPEL++ +  I E L  E+E 
Sbjct: 298 GYVLRKVLRRAVRYGRTLKLEKPFLAEVLPQLVSTMGSDYPELVKGQDRIAEILTIEEEA 357

Query: 358 FGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           F +TL RG  +L+ V+       +I++GD AFKL DT+GLP++ +  I    GL  +D  
Sbjct: 358 FIRTLKRGGNILNQVIEKSRASHQIISGDDAFKLKDTYGLPIEEILLIAKDSGLK-VDEP 416

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            + Q  EE + R+R     +     E I+    +  G T+F G+                
Sbjct: 417 RYQQLEEEAKQRSRHVHKTVHQIAGENIFADFVKVRGETKFAGFTQ-------------- 462

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    N + S V  +   GE VEE  SGQ+  V   +TPFYAE GGQ+GDTG    
Sbjct: 463 ---------NSLKSSVVGLFVNGEFVEEMQSGQEGLVFLSETPFYAEMGGQVGDTGTLEN 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              +  + D     +G+  H   +  G L+    +  +ID + R++++ NH+ATHLLH A
Sbjct: 514 SNSKFSVEDCVVPYKGLIAHKGKLNTGSLKNGEMITASIDKKRRQKIANNHTATHLLHWA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG H+ Q GS + P  LRFD +H K ++  E + IED VN  I +NLPV    +  
Sbjct: 574 LHQILGEHIKQAGSVVDPQRLRFDFSHHKALSLEESRQIEDLVNQKIRENLPVKCYEIKY 633

Query: 657 EDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           E+A          G KY   VRV+ +       +S  LCGGTH S+ G I L  I+ ES 
Sbjct: 634 EEAQKKEDIKQFFGEKYGSTVRVIDI------DYSKELCGGTHTSALGNIGLFRILKESG 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AGIRRIEA+TG  A       ++ L++LA  LKV    V+ ++E++ EE ++      
Sbjct: 688 IAAGIRRIEAVTGAEAELLQRQDEDLLRTLAQQLKVPIHQVLEKLEKLQEENKQFIAELK 747

Query: 776 KRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +     +N       ++ + + +    + +  +EL+  +D +  +I S +I+L   
Sbjct: 748 EIKKKELNVLINGFIKKIEQLGNTSVLILE-TALSVEELRLCVDLISDQIPSAVIILGAA 806

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K  +L+ +++DL+    NA ++ ++   ++  G GGG+ H AQ GG       +A 
Sbjct: 807 FPD-KCQILVKISDDLVKQGINANEIIKILMPIVE-GSGGGKQHTAQGGGKKPAMLGEAF 864

Query: 890 AGVASFLKK 898
             +  +LK+
Sbjct: 865 KQIRIYLKE 873


>gi|239623766|ref|ZP_04666797.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521797|gb|EEQ61663.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 887

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/907 (37%), Positives = 511/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 14  VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD  
Sbjct: 74  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVVGLDAD 129

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF +W K  G+ A +I +    DNFW    +GPCGPCSE+++D+GE  
Sbjct: 130 RLYPSVYLEDDEAFDIWNKEIGIPAGRIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEQY 188

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RYIE+WN VF QF+         L   +IDTGMGLER+A V+Q   
Sbjct: 189 GCGSPDCTVGCECDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVVVQGVD 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + + +D  K L+    +++  +Y+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGY
Sbjct: 249 SLFTVDTNKALLDRVCELSHTEYQKDHETDVSLRIVADHVKSCTFMISDGIMPSNEGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R LG     +  L   +       YPEL + +++I + L  E+++F 
Sbjct: 309 VLRRLLRRAARHGRKLGIEGRFLAELSRTVIELCKDGYPELEEKQVMIFKVLSEEEDKFN 368

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL++L  +   + K+    L+G  AFKLYDT+G PLD+ ++IL  +G  G+D   
Sbjct: 369 KTIDQGLMILGEMEEEMQKEGSRTLSGTNAFKLYDTYGFPLDLTKEILEEKGY-GVDEDG 427

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+ A++EQ+ +AR           +   +   +    T+F+GYD L              
Sbjct: 428 FDAAMKEQKEKARKARKTTNYMGADVTVYQSIDPSITTEFVGYDKL-------------- 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + E+V+    GQK  V+  QTPFY   GGQ GD G  + +
Sbjct: 474 ---------SAVSRITVLTTEDELVQALTDGQKGTVIVGQTPFYGTMGGQQGDVGVIVNE 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D      G   H  I+ +G+L+ + S+ L++  +NR  +  NHSATHLL  AL
Sbjct: 525 NGEFKVEDTIHLQGGKVGHVGIMTKGMLKVDDSVTLSVCGKNRALICKNHSATHLLQKAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS +    LRFD TH   +T  E+K +E  VN  I  +LPVVT IM  E
Sbjct: 585 RLVLGDHVEQAGSYVDAGRLRFDFTHFSAMTPEEIKKVEALVNKEIQASLPVVTEIMTLE 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV +     G  S+ LCGGTHV++T  I    I+SE+ I 
Sbjct: 645 EAKKTGAMALFGEKYGDSVRVVEM-----GDFSTELCGGTHVANTNNIASFKILSEAGIA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    +  L   A   K +   ++ ++  + +E + L   + K 
Sbjct: 700 AGVRRIEALTSEGLMKYYEEMEAGLHEAAKAAKTTPAALISKIHALLDEIKSLNSENEKL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + L        ++  V  ++  +S VD   L+S+ D L+ K+  G+++LV   +
Sbjct: 760 KSRLANDSLGDVMSQVKEVNGVKVLASRVSGVDMNGLRSLGDQLKDKLGDGVVVLVS-EQ 818

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++   T+ +  +  +A +L +  A ++GGGG GGRP MAQ+GG N    + A+  
Sbjct: 819 DGKVNLMATATDAVQKKGAHAGNLIKAIAGLVGGGG-GGRPGMAQAGGKNPAGIEDALKK 877

Query: 892 VASFLKK 898
               +++
Sbjct: 878 AVEVVEE 884


>gi|312622432|ref|YP_004024045.1| alanyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202899|gb|ADQ46226.1| alanyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 883

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/909 (38%), Positives = 522/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 178 EKGCGRPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VTG  Y  +    V+ RVI DH+R + F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTGYDYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+L   E  +  ++  +     + YPEL+Q    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRAARHGRMLDKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  +LNG++AFK+YDT+G PLD+ ++I   +G+  ID 
Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKETVLNGEIAFKMYDTYGFPLDLTKEIAAEKGII-IDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   + E    T F+GYD L+           
Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLKQ---------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I    E    A       V+ D+TPFYAE+GGQ+ D G   
Sbjct: 466 -------------EAKILKIFLDNEETAYAKEEDVCFVILDKTPFYAESGGQVADKGILE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K   G  +H   V +G +    S+V  +D + R     NH+ATHLLH 
Sbjct: 513 GEGVLAEVLDVKKGPRGTILHKVKVLKGEITVLSSVVAKVDEELRLATMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS +TPD LRFD  H +P++  +L  IE  +N+II Q +PV   + +
Sbjct: 573 ALRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQLIEIEKMINNIIQQAIPVEKIVTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++  + + L++  
Sbjct: 688 VAAGVRRIEAITGNKVYGFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLEVEI 747

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   +LS          +   + +     D   +K + D ++++  S  I+L  
Sbjct: 748 EKYKLLVVENELSSLFGKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKER-DSKAIVLNI 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           + +  K +VL+  +++ + +  +   + +    VL GG GGGRP  AQ GG + +K D A
Sbjct: 807 LEQSSKVTVLMSCSKEAVKKGVDCGKVVKEICSVL-GGKGGGRPDFAQGGGNDISKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 LQTAENILK 874


>gi|126698879|ref|YP_001087776.1| alanyl-tRNA synthetase [Clostridium difficile 630]
 gi|254974827|ref|ZP_05271299.1| alanyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255092215|ref|ZP_05321693.1| alanyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255100300|ref|ZP_05329277.1| alanyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255306239|ref|ZP_05350411.1| alanyl-tRNA synthetase [Clostridium difficile ATCC 43255]
 gi|255313954|ref|ZP_05355537.1| alanyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255516634|ref|ZP_05384310.1| alanyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255649733|ref|ZP_05396635.1| alanyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|260682889|ref|YP_003214174.1| alanyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260686487|ref|YP_003217620.1| alanyl-tRNA synthetase [Clostridium difficile R20291]
 gi|306519842|ref|ZP_07406189.1| alanyl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|122974138|sp|Q18BE7|SYA_CLOD6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115250316|emb|CAJ68138.1| Alanyl-tRNA synthetase [Clostridium difficile]
 gi|260209052|emb|CBA62175.1| putative alanyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260212503|emb|CBE03433.1| putative alanyl-tRNA synthetase [Clostridium difficile R20291]
          Length = 879

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/908 (36%), Positives = 538/908 (59%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR+ FLEFF+  GH +  S SL+P ND +L+  NSGM P KN F+G E P    +
Sbjct: 4   MGLNEIRSKFLEFFESKGHYVANSYSLVPNNDKSLLLINSGMAPLKNYFSGVEVPPSVRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D++NVG T RH TFFEM+GNFSFG YFK  +I+  W+ +T+  ++ 
Sbjct: 64  CTSQKCIRTG----DIENVGITARHATFFEMMGNFSFGDYFKRESIKWGWEFVTEWLNIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++++TVY+ED++++ +W K      ++++R+  +DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 120 EDKIWVTVYEEDDDSYDIWAKEMNFPEERMVRLGKDDNFWEIG-TGPCGPCSEIYFDRGE 178

Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                        + +RY+E WN VF QF++  +    +L   +IDTGMGLERM  ++Q 
Sbjct: 179 EYGCDNPDCKPGCDCDRYLEFWNHVFTQFDRDEEGNYSLLENKNIDTGMGLERMGCIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K +++A E++TG+KY     N ++ R+I DH+R+ +FL++DG+LP+NEGR
Sbjct: 239 VDTIFEVDTIKSILEAVEKLTGVKYGENPKNDISIRIITDHIRAVTFLVSDGVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG  E  +  L+  +      AYP L++ +  I++ +  E+E+
Sbjct: 299 GYVLRRLLRRAARHGKLLGVKELFLQKLIDEVIKVNDKAYPVLVEKESYIKKVVGIEEEK 358

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D+G  +L+  +         +L+G  AFKLYDT+G P+D+ ++IL       +D 
Sbjct: 359 FNETIDQGTEILNSYIEVLKNEGKTVLSGQEAFKLYDTYGFPIDLTKEILEEE-HLSVDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +FN+ +E+Q+ RAR     +   + ++   S  E    + F GY  + G          
Sbjct: 418 EAFNEEMEKQKERARNARGNMDGESWKEDPLSKLESTVDSTFNGYSEIYG---------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           ++AIV+  E+V+ A  G KV +V D T FY E GGQ+GD G   
Sbjct: 468 -------------EGTIEAIVKDDELVQSAEEGDKVSIVLDNTTFYPEGGGQVGDCGLIT 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            + + L++ + +K A     H  I++ G +     +   +D + R   + NHSATHLLH 
Sbjct: 515 NENLVLEVLNTKKGANNSIKHIGIIKSGRISNGDKVKTLVDRETRMSAARNHSATHLLHK 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS +TP+ LRFD+TH + I++ ELK IE+ VN++I  +L +   IMN
Sbjct: 575 ALREVLGEHVNQAGSLVTPERLRFDITHFEAISNEELKVIEEKVNNVILSSLDIKCDIMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A   GA AL G KY D VRVVS+     G +S+ LCGGTH+++T ++ +  I+SE  
Sbjct: 635 IKEAKEKGATALFGEKYGDEVRVVSM-----GDYSTELCGGTHLTNTSQVGMFKILSEGG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEAITG+    +L  +D  +  +   LK  + N++ R+  + EE + L     
Sbjct: 690 VAAGVRRIEAITGKAVYEYLKERDGIISEVCVNLKSKEDNLIQRISSLLEENKNLSKELH 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +++++ +     S  ++  VN +++    +D   L+   D L+ K+ SG+++L  +
Sbjct: 750 DMKAKMSLQSVDSIFDSKVEVNGVNLITNKFEGMDMDTLRETADNLRDKLGSGVVVLANV 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K + ++  T+D+LD+  ++ ++ R  AK+ GG G GGRP+MAQ+G  + +K DQA+
Sbjct: 810 V-DDKVNFVVTATKDVLDKGIHSGNIVREVAKIAGGKG-GGRPNMAQAGASDVSKVDQAL 867

Query: 890 AGVASFLK 897
           +  +  +K
Sbjct: 868 SYASEVIK 875


>gi|310658795|ref|YP_003936516.1| alanyl-tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308825573|emb|CBH21611.1| alanyl-tRNA synthetase [Clostridium sticklandii]
          Length = 882

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/912 (37%), Positives = 529/912 (58%), Gaps = 50/912 (5%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  + IR  +L FF+   H    S SL+P ND +L+  N+GM P KN F G E P  
Sbjct: 1   MKNLGVNEIREKYLSFFRSKDHYSRSSFSLVPENDKSLLLINAGMAPMKNYFMGLETPPN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + + T QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +TK+ 
Sbjct: 61  KRMATCQKCVRTG----DIENVGKTARHATFFEMLGNFSFGDYFKKEAIAWAWEFVTKDL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFF 177
           +L+   L++TVY ED+EAF +W+K   +  ++I+R+   DNFW +   TGPCGPCSEI+ 
Sbjct: 117 ELNPDDLWVTVYLEDDEAFDIWEKDINVPKERIVRLGKEDNFWEIGTGTGPCGPCSEIYI 176

Query: 178 DQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D+G+      P      + +R++E WNLVF QF +        LP  +IDTGMGLERMA 
Sbjct: 177 DRGKEFGCSDPDCKPGCDCDRFLEFWNLVFTQFNKDEDGNYNPLPNPNIDTGMGLERMAC 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           ++Q   + +DID  K +     +++G +Y       V+ R+I DH R+ +FLI+DG+LP+
Sbjct: 237 IMQGVDSIFDIDTMKSIRDNVCELSGKEYGKSTETDVSIRLITDHSRAVTFLISDGVLPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA  + RLLG     ++ L+  +    G AYP+L++ K  I++ L  
Sbjct: 297 NEGRGYVLRRLIRRAARHGRLLGIKNNFLVKLMETVIENYGEAYPDLVEKKEYIKKILTV 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F +TLD+G+V+L   +  +     ++L+G+ AF+LYDT+G P+++  +I+   GL 
Sbjct: 357 EEEKFSETLDQGMVILKEYMDKIKSESKDVLSGEDAFRLYDTYGFPIELTLEIVEEYGLK 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +++Q+ RAR+     G    ++   +L       +FIGY+ L        
Sbjct: 417 -VDEDGFKAEMQKQKERARSARTDKGVEGWKETADTLTFSIEKNEFIGYNELE------- 468

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ +K I+   + ++    GQ  E+VF++TPFYAE+GGQ+ D 
Sbjct: 469 ----------------ASAQIKDIIFDNQKIDILSEGQAGELVFEKTPFYAESGGQVADK 512

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ DVQK   G+F+H   V  G  +      L +D + R+    NH+ TH
Sbjct: 513 GIVKSENFVAEVKDVQKSHNGLFIHRVEVVSGEAKLSDKCELVVDEKLRKSTQRNHTCTH 572

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+H+ Q GS ++   LRFD TH +PITS +L  IE+ VN+ I +  PV  
Sbjct: 573 LLHKALRQVLGAHIHQAGSLVSDTRLRFDFTHFEPITSEQLSQIENMVNEAIFKAYPVKV 632

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +MN E+A  SGA AL   KY D VRVVSV     G  S+ LCGGTHVS++ +I +  I+
Sbjct: 633 EVMNIEEAKKSGAMALFDEKYEDNVRVVSV-----GEFSTELCGGTHVSNSSDIGMFKIL 687

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEAITG     +L+ ++  L  + S +K ++ N+V ++ +  E+Y+  Q
Sbjct: 688 SESGIASGVRRIEAITGSNVYQYLLEKEAVLDEIKSLVKSNEDNLVIKLSQTIEDYKTAQ 747

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +K K ++    ++        I  + ++     ++D + L++V + +  KI++ +++
Sbjct: 748 KELSKLKSEIAKNQINEILEGAKDIDGIKYVYSSFEDLDDETLRNVAENVIDKIENSVVL 807

Query: 827 LVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L     E K S + +V++  L    +A    +  + + GGGG GG+P+MAQ+GG + +K 
Sbjct: 808 L-SSYFENKISFVCMVSKGALQKGVHAGKFIKEVSSLTGGGG-GGKPNMAQAGGKDISKL 865

Query: 886 DQAIAGVASFLK 897
            +A+    + LK
Sbjct: 866 GEAMKQSETILK 877


>gi|170078279|ref|YP_001734917.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|205830236|sp|B1XP68|SYA_SYNP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169885948|gb|ACA99661.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 877

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/906 (37%), Positives = 506/906 (55%), Gaps = 50/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FLEFF +  H +LPS+SL+P  DPT++ T +GM+PFK IF GQ+       T
Sbjct: 9   SGSEIRSKFLEFFNQRQHPILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQDAPSPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  AW+L T+ F LD 
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFQLDP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + + ++V+ ED+EAF++W+   G++  +IIR+   DNFW    TGPCGPCSE+++D    
Sbjct: 124 KNIVVSVFREDDEAFEIWRDKVGVNPKRIIRMGEEDNFWKSGPTGPCGPCSELYYDFKPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GDDNIDLEDDTRFIEYYNLVFMQYNRDAEGHLTPLQNKNIDTGMGLERMAQILQQVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + +  G+ YE  +     + +VI DH+RS   +IADGI  +N  RGY
Sbjct: 243 NYETDLIFPIIETAAKAAGIHYEKADEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +         +AYP   + +  I++ L  E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGIDGNFINQVAETAIQLSEAAYPNTRERESFIKQELEREENNFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RG  LL  +++   +++ ++G  AF L+DT G P ++ Q+I    GL  +D   + 
Sbjct: 363 KTLERGEKLLADIIAK--EEKQISGVDAFTLFDTFGFPFELTQEIAEENGLT-VDAEGYQ 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +++Q+ R++A    +   T +     L E    T F+GY  L+               
Sbjct: 420 AEMKKQQERSKAAHETIDL-TVQGSLDELAEHIHPTAFLGYTDLQSQV------------ 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       ++A++  G  VE A +G  V+++ +QTPFYAE+GGQ+GD G   GD +
Sbjct: 467 -----------KIEAVLVDGHRVETAEAGVVVQLICNQTPFYAESGGQIGDRGYFSGDQL 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV +K  G FVHH  VERG L    ++  TID   RR+   NH+ATHLL  AL  
Sbjct: 516 VVRINDV-QKESGFFVHHGKVERGSLTVGDTVNATIDRACRRRAQANHTATHLLQAALKN 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T+AEL  IE  +N  IA+       +M   +A
Sbjct: 575 IVDDSISQAGSLVDFDRLRFDFNCPRALTAAELTQIEAQINTWIAEAHEGQVAVMPIAEA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY + VRVV          S  LCGGTHV +T EI L  I+SE+ I +G
Sbjct: 635 KAKGAVAMFGEKYGEEVRVVDFPG-----VSMELCGGTHVKNTAEIGLFKIISETGISSG 689

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G     +L  +D+ +K L    K     +  RVE I  E R  Q    K K 
Sbjct: 690 IRRIEAVAGPAVLEYLKVRDQVVKDLGDKFKAKPEEITERVENIQAELRNTQKELEKVKA 749

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +            + +   +   + ++D+K L++  + LQ+K+    ++L    ++ 
Sbjct: 750 ELAIAKSEALVSQAETVGEFQILVENMGDLDAKALQTAAERLQQKLGEAAVVLGSTPEDG 809

Query: 835 KASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   +E +    +  A       AK+ GGGG GGRP++AQ+GG + +K  +A+   
Sbjct: 810 KVSLVAAFSEGIYKGKKVQAGKFIGGIAKLCGGGG-GGRPNLAQAGGRDASKLPEALHTA 868

Query: 893 ASFLKK 898
              L++
Sbjct: 869 KQQLRE 874


>gi|242373918|ref|ZP_04819492.1| alanyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
 gi|242348472|gb|EES40074.1| alanyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
          Length = 876

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/914 (36%), Positives = 506/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED  A+K+W +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDTGAYKIWNEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQNDPEEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q    NY+ DLF  +I   E ++G KY   +   V  +VI DH+R+ +F IADG 
Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENISGKKYLEVDEQDVAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+  +      +  + G+ AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLEEGLAILNQFIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK     + F+GY+        
Sbjct: 414 LT-VDMATFENEMQQQRDRARQARQNSQSMQIQSEV--LKNITDDSTFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S +  ++  GE VE   +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 467 -------------------QSTITHLIYNGEEVESVEAGETVYFILKETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    +   + +T+V K   G  +H   V+ G       +  +++   RR +  NHSA
Sbjct: 508 DEGTVGNENFEIAVTEVTKAPNGQNLHKGTVQFGQATVGAEVDASVNKDERRAIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  D LRFD +H  P++  E+  +E  VN+ I + + V
Sbjct: 568 THLLHQALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMSQEEIDQVERRVNEEIWRGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M  ++A + GA AL G KY D VRVV++        S  LCGG HV++T EI L  
Sbjct: 628 RIQEMGIDEAKSMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L     K  ++ + +KV   + VVG++ ++ EE +
Sbjct: 683 IVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNNVKVKSDDQVVGKITQLQEEEK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +     I D+  ++  +   ++K ++S MD  + K+Q  
Sbjct: 743 NLLKQLEQRNKEITSLKMGNIEDQVETINDLKVLATEVDVPNAKAIRSTMDDFKSKLQDA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   +   K S++  V + L D+  A DL +  A V+ GG GGGRP MAQ GG    
Sbjct: 803 IIVLAS-NVNGKVSIIATVPKSLTDQVKAGDLIKHMAPVV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
           K  +A+  +  ++K
Sbjct: 861 KITEALRFIKDYIK 874


>gi|116493011|ref|YP_804746.1| alanyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
 gi|122265525|sp|Q03ER8|SYA_PEDPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116103161|gb|ABJ68304.1| alanyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
          Length = 881

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/915 (34%), Positives = 492/915 (53%), Gaps = 60/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR  +L+FF+  GH + PS+SL+P +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   KSSSEIRRMYLDFFKSKGHIIEPSASLVPQDDPTLLWINSGVATMKKYFDGSVVPEVPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFKE AI  AW+LLT  + + 
Sbjct: 64  TSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWYG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +D  +LY+TVY +DEEA K+W + + +    I+++   DNFW + E GP GP SEIF+D+
Sbjct: 120 MDPEKLYVTVYPKDEEAKKIWLE-TPIDPSHIVKV--EDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 GECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           GE          E        R++EIWN+VF QF  +       LP  +IDTGMGLER+ 
Sbjct: 176 GEAFNNLEDDDPENYPGGENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVV 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +V Q+   N++ DLF  +I   E+++G KY     + ++ +VI DH R+ +F I DG +P
Sbjct: 236 SVFQDAPTNFETDLFLPIIHEVEKLSGKKYGENKESDISFKVIADHARAITFAIGDGAIP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV+RR++RRA+ + + LG  E  +  ++P +   M   YPE++  +  I + ++
Sbjct: 296 SNEGRGYVIRRLLRRAVMHGKQLGVNETFLYKMVPVVGEIMKDYYPEVLADQDYIAKVIK 355

Query: 353 SEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF +TL  GL LL+ ++        + ++G  AF+L+DT+G PL++ ++    +GL
Sbjct: 356 SEEDRFSETLTDGLELLNTIIDETKTKGSDTISGFDAFRLFDTYGFPLELAKEYASDKGL 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F   +++Q+ RAR+      S   +     L +    ++++GYD LR      
Sbjct: 416 K-VDEAGFEDEMQKQKERARSARSTEKSMGVQSDL--LTDLKTESKYVGYDTLRVD---- 468

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             ++I++ ++Q G++ +    G+   V+F+ TPFYAE GGQ+ D
Sbjct: 469 ------------------NAILENVIQDGKLTDIVEPGE-ARVLFNITPFYAEMGGQVAD 509

Query: 531 TGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G        +    +  + A      H I     + +  +  L ++     ++  NH+A
Sbjct: 510 QGEIRDANGEIVAEVIDVQHAPNGQNLHTIKALKKMHSGAAYTLEVNRAFHLKVEKNHTA 569

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL  ILG H  Q GS + P  LRFD TH   +T+ +L  +E  +N+ I   +PV
Sbjct: 570 THLLDQALRDILGDHTQQAGSLVEPGYLRFDFTHFGQVTNEDLDRVEKIINEKIYDEIPV 629

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T   + E     GA AL   KY  +VRVV +     G +S   CGGTHV +T EI L  
Sbjct: 630 TTVETDLETGKKMGAIALFNDKYGKKVRVVGI-----GDYSKEFCGGTHVKNTNEIGLFK 684

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYR 768
           IVSES + AG+RRIEA+T Q A   L  ++  LK  A  LK     +V  + E++    +
Sbjct: 685 IVSESGVGAGVRRIEAVTSQAALEFLNTEENLLKQTAGLLKSAQLKDVPTKTEQLQSNVK 744

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L    ++ + ++             +I  V  ++  +      +L+ + D  + K QS 
Sbjct: 745 ALTQKISQLEAKIAKSQAANIGDEMVEINGVRLIAADVQVSGMDQLRQMADDWKNKDQSD 804

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L     E KA+++  V +D + +   A DL +  A  + GG GGGRP+MAQ+GG N 
Sbjct: 805 VLVLAAKIGE-KANLIAAVKDDFVKKGLKAGDLIKAIAPKVNGG-GGGRPNMAQAGGSNP 862

Query: 883 NKADQAIAGVASFLK 897
           +    A+     +L+
Sbjct: 863 DNIKAALQAAREWLE 877


>gi|295111268|emb|CBL28018.1| alanyl-tRNA synthetase [Synergistetes bacterium SGP1]
          Length = 879

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/906 (37%), Positives = 497/906 (54%), Gaps = 47/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R  FL+F+++ G    PS SLIP +DP+L+FT +GMVP K  + G  +P Y  + 
Sbjct: 5   TGRELREMFLKFWEEKGSHRCPSFSLIP-DDPSLLFTIAGMVPLKPYYLGIRQPPYPRIV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVGRT RHHTFFEMLGNFS+G YFK+ AI  AW+ LT    LD 
Sbjct: 64  TSQKCVRT----NDIENVGRTARHHTFFEMLGNFSWGSYFKKEAITWAWEFLTDRIGLDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY T+Y +DEE+ ++W + +GL  D+I+R   ++N+W M +TGPCGPCSEI++D+G  
Sbjct: 120 NRLYATIYQDDEESREVWHRQAGLPEDRILRFGQDNNYWFMGDTGPCGPCSEIYYDRGPD 179

Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P      + +RY+EIWNLVF QF++Q       LP  +IDTGMGLER+A+V+Q  
Sbjct: 180 YGCGKPSCGVGCDCDRYLEIWNLVFTQFDRQKDGSLPNLPHKNIDTGMGLERLASVVQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             +Y+ DLF  LI+ +    G++Y     N +  RVI DH+RS +F++ADG+LPAN+G G
Sbjct: 240 DTDYETDLFTPLIRHTCARAGIQYGQGGRNDMAVRVIADHVRSVAFMLADGVLPANDGPG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA+ + RLLG+    +   +P L   MG  Y ELI  +  IE+ +  E+ERF
Sbjct: 300 YVLRRLLRRAVRFGRLLGFEGAFLCEYMPILIDLMGDPYRELIDQRPTIEQIITVEEERF 359

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL +G  L +   + L       + G+V F LYDT+G P ++ +++   +G   +D  
Sbjct: 360 QRTLQQGTDLFEAETARLAAAGRREVPGEVVFTLYDTYGFPPELTREMADEQGF-AVDEA 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+++QR RARA S    S     ++  L+ + GAT+F GY                
Sbjct: 419 GFKAAMQQQRDRARASSKQKKSALAGDVYTELENEGGATRFTGY---------------- 462

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                   +   +  V AI+ +    +      + E+V D+TPFYAE GG++GDTG    
Sbjct: 463 -------ASAMGAGKVTAILTKEGRRDHVEGNGEFELVLDETPFYAERGGEVGDTGTIRD 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
               L++ +       + VH   +  G +R   S+    D   R+ +  NH+ THLLH A
Sbjct: 516 GETTLEVLNTVPHGG-VIVHRVRMTEGSVRVGDSMTAEADDARRQAIRRNHTGTHLLHEA 574

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +T   LRFD TH  P+T  +++ +E  VN  I +N+PV T     
Sbjct: 575 LGRVLGRHVRQAGSLVTDRFLRFDFTHHTPLTDGQIEEVERIVNGEILRNVPVSTAEHTL 634

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A   GA AL   KY D VRVV+V        S  LCGG HV +TG+I    ++ E SI
Sbjct: 635 EEARELGAKALFDEKYGDVVRVVTVP-----DFSMELCGGLHVRATGDIGSFKVLREESI 689

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---I 773
            +G RRI A+TG      +       + L   L   +  +  + +++ EE R LQ     
Sbjct: 690 GSGTRRILAMTGMEVVELMQVLFGLRRRLMGILSADEEGLEAKAKDLAEELRALQKRAQE 749

Query: 774 HAKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            A+ +L  NV+  +   ++           +V S  L+ V D ++      + +L  + +
Sbjct: 750 RARHELTDNVDRFVERRRVGGAVLHIGRFPDVKSDVLRDVGDRVKAGPDPSVALLASVDE 809

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
               +++++  +  +    NA  + R ++ VL GG GGGRP  AQ GG +G K D+A+  
Sbjct: 810 NGACTLIVMADDRAVKLGANAGAIVREASAVL-GGKGGGRPSTAQGGGRDGEKLDEALER 868

Query: 892 VASFLK 897
            A  LK
Sbjct: 869 AAEVLK 874


>gi|56963357|ref|YP_175088.1| alanyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|59798485|sp|Q5WHM8|SYA_BACSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56909600|dbj|BAD64127.1| alanyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 876

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/910 (38%), Positives = 517/910 (56%), Gaps = 56/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + +S+R  F++FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   SSASVRQMFIDFFKEKGHSVEPSASLVPFEDPSLLWINSGVATLKKYFDGRVIPENPRIV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE+AI+ AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEQAIEWAWEFLTDKKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            Q RL +TV+ EDEEA++ W +  GL  ++IIR+    NFW + E GP GP SEIF+D+G
Sbjct: 121 PQERLSVTVHPEDEEAYRYWHQHIGLPEERIIRL--EGNFWDIGE-GPSGPNSEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM +V
Sbjct: 178 PEYGDDPNDPELYPGGENERYLEIWNLVFSQFNHNADGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q+   N++ DLF  +I+A+E +    Y+  +    +VI DH+R+ +F + DG LP+NEG
Sbjct: 238 IQDTPTNFETDLFMPIIEATEALASTTYKEAD-TAFKVIADHIRTVAFAVGDGALPSNEG 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ +A+ +G   P M  L+P +   M   YPE+   +  I   +R+E+E
Sbjct: 297 RGYVLRRLLRRAVRFAKSIGIDRPFMYELVPVVGAIMKDFYPEVADKQDFIARVIRTEEE 356

Query: 357 RFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL+ GL +L  ++  +     E + G+ AF+LYDT+G P+D+ ++ +   GL  +D
Sbjct: 357 RFHETLNEGLAILSDIIEKAKATNKETIAGEDAFRLYDTYGFPIDLTEEYVHDEGLT-VD 415

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F+Q +E+QR RARA      S + ++  F   E    + F+GY+             
Sbjct: 416 RAGFDQEMEQQRQRARAARQESASMSVQEDVFG--EVKTPSVFVGYEHTETD-------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          +++  +V+  E VE+AV G  ++   D+TPFYAE+GGQ+ D G  
Sbjct: 466 ---------------AVITTLVRGKEKVEQAVQGDVIQFFLDETPFYAESGGQVADRGMI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + D  +  + DV+K   G  +H A V  G + T       I+ + R  +  NH+ATHLLH
Sbjct: 511 VTDTGQAVVKDVKKAPNGQHLHTAEVTIGEISTGQQASARIEVRERLDIVKNHTATHLLH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS ++ + LRFD +H   +T  EL+ IE+ VN+ + Q LPV   I 
Sbjct: 571 QALKDVLGEHVNQAGSLVSSERLRFDFSHFGQVTPNELQQIEEIVNEKVWQALPVDISIQ 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A A+GA AL G KY   VRVV V     G +S  LCGG HV +T EI L  I SES
Sbjct: 631 RLEEAKAAGAMALFGEKYGSEVRVVRV-----GDYSLELCGGCHVRNTAEIGLFKITSES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLI 773
            I AG+RRIEA+T + A   L  Q   LK  A  LK  +  +V  R+E + EE RK Q  
Sbjct: 686 GIGAGVRRIEAVTSKGAYQFLSEQTAILKDAAERLKAKRLSDVPQRIESLQEELRKAQRE 745

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +     +L   +         +I  V  ++  +   D++ L+S++D L++  +  +I+L 
Sbjct: 746 NESLTAKLGQAEAGNLNDQVKEIGGVAVIAAQVDAKDTEALRSMVDTLKQAHEKAVIVLA 805

Query: 829 GISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +   K + +  VT+  + + F+A  L +  A   GGGG GGRP MAQ+GG +  K D+
Sbjct: 806 AKTGN-KLAFVAGVTKPAIAEGFHAGKLIKEVAARTGGGG-GGRPDMAQAGGKDPAKLDE 863

Query: 888 AIAGVASFLK 897
           A+A V  ++K
Sbjct: 864 ALAYVHEYVK 873


>gi|241890033|ref|ZP_04777331.1| alanyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241863655|gb|EER68039.1| alanyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 873

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/913 (36%), Positives = 513/913 (56%), Gaps = 57/913 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+FF + GH++ PS+SL+P +DP+L++ NSG+   K  F G+E P  
Sbjct: 1   MKQLTSTQIRRMYLDFFVEKGHKIEPSASLVPIDDPSLLWINSGVATLKKYFDGREIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  A+  AW+ LT  K
Sbjct: 61  PRITNSQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKNEAVPWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L++ +L +T++ ED EA+ LWK + GL  ++IIRI    NFW + E GP GP +EIF
Sbjct: 117 WLGLEKEKLSVTIHPEDTEAYDLWKNVIGLPEERIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E +RY+E+WN+VF Q+          LP  +IDTGMGLER
Sbjct: 174 YDRGEEADTWSPKEEMYPGGENDRYLEVWNVVFSQYNHNADGTYSELPAKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           + +VLQ+   N+D DLF  +I+  E+++G KY       V  +VI DH+R+  F IADG 
Sbjct: 234 IVSVLQDVPTNFDTDLFIPIIREIEKLSGAKYGVSTEQDVAFKVIADHIRTVVFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ +A++LG     M  L   +   M   YP + ++   +++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRFAKVLGLNNSFMYKLTDVVAEIMVDYYPNVKESASFVKDV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +  E++RF +TL  G  +L+ + + +    ++++G  AFKLYDT G P+++ ++     G
Sbjct: 354 ILKEEDRFHETLHEGETILNNIANEVKDTTKVISGKDAFKLYDTFGFPIELTEEYAEELG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +DI  FN+ +E+Q+ RAR+      S   +   +S  +  G ++F GY  L      
Sbjct: 414 LT-VDIDGFNEEMEKQKERARSSRQDDSSMQVQSDLYS--KIVGDSEFTGYTSLTD---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE-VVFDQTPFYAEAGGQL 528
                                 V AIV + + + E   G++V  VVF++TPFYAE+GGQ+
Sbjct: 467 -------------------EGKVLAIVDREDNLLENYKGEEVVKVVFERTPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +G + ++ DV+K  +   +H   V  G L       L ++   R  +  NH+
Sbjct: 508 ADKGLVTAEGFKAEVVDVKKLPDKRHIHFVKVVEGELVVGKEYKLEVNRPYRLNVEKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL+ AL   +GSH+ Q GS +T + LRFD+TH  P+T  E++ +E  VN  I   L 
Sbjct: 568 ATHLLNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWNALE 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + T  M   +A   GA AL G KY D VRVVS+     G +S  LCGGTH  ++ E+ + 
Sbjct: 628 IKTEEMPIAEARKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNVNSAEVGIF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES + AG+RRIEA+TG+ A  +L  Q+E L+S+    K +  NVV +V  +  + +
Sbjct: 683 KIVSESGVAAGVRRIEALTGKAAYEYLREQEETLRSVEKLTKANSSNVVEKVSSLQSDIK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           KL       + ++   +L     +  ++  VN ++ ++   +   LK ++D  + K+++ 
Sbjct: 743 KLSKEKESLQQKIANAELNNLVNNIKEVNGVNVLTSVVESENMNHLKQLVDNAKSKLENY 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I    +  E K + ++ V + + D++NA  L  + A V   G GGGRP MAQ+G  N +
Sbjct: 803 VIAFASV-NEDKVNFVVAVDKAITDKYNAGKLVNVLATVC-DGRGGGRPDMAQAGAKNKD 860

Query: 884 KADQAIAGVASFL 896
             D+A   + + +
Sbjct: 861 NIDKAFDELLANI 873


>gi|304385238|ref|ZP_07367583.1| alanine--tRNA ligase [Pediococcus acidilactici DSM 20284]
 gi|304328445|gb|EFL95666.1| alanine--tRNA ligase [Pediococcus acidilactici DSM 20284]
          Length = 881

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/915 (35%), Positives = 499/915 (54%), Gaps = 60/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR  +L+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   KSSSEIRRMYLDFFKSKGHVVEPSASLIPKDDPTLLWVNSGVATMKKYFDGSVVPEVPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFKE AI  AW+LLT  + FD
Sbjct: 64  TSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +D  +LY+TVY +DEEA K+W + +G+    I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 MDPEKLYVTVYPKDEEAKKIWLE-TGVDPSHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 GECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           GE          E        R++EIWN+VF QF  +       LP  +IDTGMGLER+ 
Sbjct: 176 GEEFNNLADDDPENYPGGENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVV 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +V Q+   N++ DLF  +I   E+++G KY  + N+ V  +VI DH R+ +F I DG +P
Sbjct: 236 SVFQDAPTNFETDLFLPIIHEVEKLSGKKYGVDKNDDVPFKVIADHARAITFAIGDGAIP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV+RR++RRA+ + + L   +P +  ++P +   M   YPE++  K  IE+ ++
Sbjct: 296 SNEGRGYVIRRLLRRAVMHGKKLNINKPFLYQMVPVVGKIMEDYYPEVLADKDYIEKVIK 355

Query: 353 SEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF +TL  GL LL+ +++       ++++G  AF+L+DT+G PL++ ++    +G+
Sbjct: 356 SEEDRFNETLTDGLELLNSIIADTKADHSKVISGKDAFRLFDTYGFPLELAKEYAEDQGM 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +++Q+ RAR+      S   +     L +    ++++GYD L+      
Sbjct: 416 E-IDEAGFADEMQKQKERARSARSNAKSMGVQSDL--LTDLKTPSEYVGYDTLKVDA--- 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              +++K I+Q  ++ +    G+   V+FD TPFYAE GGQ+ D
Sbjct: 470 -------------------AVLKDIIQDDQLTDTVNPGE-ARVLFDVTPFYAEMGGQVAD 509

Query: 531 TGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G        +       + A      H I  +  +    S  L +D     ++  NH+A
Sbjct: 510 QGVIEDADGNVVAEVVDVQHAPNGQNLHTIKAKREMHAGESFTLIVDRAFHLKVEKNHTA 569

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL  +LG H  Q GS + P  LRFD TH   +T  +L+ +E+ +ND I   +PV
Sbjct: 570 THLLDQALRDVLGEHTHQAGSLVEPGYLRFDFTHFGQVTDEDLQKVEEIINDKIYDEIPV 629

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T   + E     GA AL   KY  +VRVVSV     G +S   CGGTHV +T EI L  
Sbjct: 630 TTVETDLETGKKMGAIALFDDKYGKKVRVVSV-----GDYSREFCGGTHVKNTNEIGLFK 684

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYR 768
           IVSES + AG+RRIEA+T Q A   L G++  L+  A  LK     +V  +VE++  + +
Sbjct: 685 IVSESGVGAGVRRIEAVTSQAALEFLNGEEALLQKAAGLLKSAQVKDVPAKVEQLQAQVK 744

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     + + ++   +++       +I     ++  +      +L+ + D  + K QS 
Sbjct: 745 DLNQTINQLEAKIAQAEVANIYDQVQEINGFRLITAEVQVSGMDQLRQMADDWKTKDQSD 804

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L     E KA+++  V +  +     A DL +  A  + GG GGGRP+MAQ+GG   
Sbjct: 805 VLVLGAKIGE-KANLIAAVKDPFVKEGLKAGDLIKAIAPKVNGG-GGGRPNMAQAGGSAP 862

Query: 883 NKADQAIAGVASFLK 897
            K ++A+   + +L+
Sbjct: 863 EKINEALKAASEWLE 877


>gi|317056551|ref|YP_004105018.1| alanyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315448820|gb|ADU22384.1| alanyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 885

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/909 (33%), Positives = 468/909 (51%), Gaps = 42/909 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++++ +R ++L+FF+  G     S  L+P ND +L+   +GM P K  FTGQE P    +
Sbjct: 4   TSLNDLRESYLKFFESKGCLRHKSYPLVPQNDKSLLLIVAGMAPLKPYFTGQEVPPRVRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T RH T+FEMLGNFSFG YFK+ AI  AW+ +T    L 
Sbjct: 64  TTCQKCIRTG----DIENVGKTARHGTYFEMLGNFSFGDYFKKEAIAWAWEYVTDVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+++VY++D+EA K+W +  G+  D I+R+   DNFW     GPCGPCSEI+FD+GE
Sbjct: 120 LDRLHVSVYEDDDEAEKIWHEEIGVPMDHIVRMGKEDNFWEAGTDGPCGPCSEIYFDRGE 179

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+E WNLVF QFE+        L + +IDTGMGLER+A ++Q 
Sbjct: 180 KYGCGKPTCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAALMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +D+D  K +     ++ G +Y  E    V+ RVI DH+R+ +FL +DG+LP+NEGR
Sbjct: 240 VDSIFDVDTVKAIRDHICKIAGCEYGAEYKKDVSIRVITDHIRAVTFLASDGVLPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + +LLG     +  L+  +       Y EL +    I + L +E++ 
Sbjct: 300 GYVMRRLLRRAVRHGKLLGINGLFLKDLVKTVVDCNKCEYNELEEKFDYIVKVLTTEEQN 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  T+DRG+ +LD  +  L  +    L+G+  FKL DT+G PLD+ ++IL  +GL+  D 
Sbjct: 360 FNSTIDRGMKILDEYIEKLQAEGKTTLDGESCFKLSDTYGFPLDLTREILEEKGLSA-DE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +   +E+QR  AR      G    E+  F   +K  +T+F GYD              
Sbjct: 419 EGYAVCMEKQRETARGARESQGYMGAEETVFHKIDKNVSTKFTGYDKTED---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        + ++  +    +++E A     V +V DQT FYAE+GGQ GDTG   
Sbjct: 469 -------------TGVISYLANDEDLIENAGVEDVVYIVPDQTCFYAESGGQTGDTGIVE 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  + D QK   G F     V  G L     +   +D   R     NHS  HLL  
Sbjct: 516 TATGKADVLDTQKAVGGKFALKVKVTEGALTVGQQVTFKVDKAKRLATMRNHSCAHLLQA 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL ++LG HV Q G  +    LRFD +H + +T+ E   +E  VN  I   L +    M 
Sbjct: 576 ALRSVLGDHVHQAGQLVDSQRLRFDFSHFEAMTNEEKAKVEALVNKYIFDALDITMEEMP 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A   GA AL G KY + VRVV++  +     S   CGGTH+++T +I L  I+SE+S
Sbjct: 636 IAEAQKLGAMALFGEKYGETVRVVTMGDKSDAA-SIEFCGGTHLNNTSKIGLFKIISENS 694

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIH 774
           + +G+RRIEA+TG      L    + +   +  LK  +   +V R   +  E + L+   
Sbjct: 695 VASGVRRIEAVTGTGVLELLNSNIDTINKASETLKLNNPAELVARCGAVMHEIKGLEKER 754

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              +  +              +  V+  +  ++ +    L+ + D L+    + ++++  
Sbjct: 755 DSLETSMANMRAKSVLENAVDVNGVSVATAQLTNIKPDVLRKMADELKAANDNVLVIMTT 814

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ EK   V     E +    +A  +A   A  L  G GGGRP  A +G  +      A+
Sbjct: 815 VNGEKGNIVAAAGKEAVAKGAHAGKIAGKIAA-LTNGKGGGRPDSAMAGVGDVTLIGAAL 873

Query: 890 AGVASFLKK 898
              A    +
Sbjct: 874 EKAAEVAGE 882


>gi|37521917|ref|NP_925294.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|44888325|sp|Q7NI36|SYA_GLOVI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|35212916|dbj|BAC90289.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 871

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/909 (37%), Positives = 501/909 (55%), Gaps = 57/909 (6%)

Query: 1   MSNV---SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M  V   ++IR  FL+FF+   H  LPS+SL+P +DPT++ T +GM+PFK +F G+ +  
Sbjct: 1   MPTVLNGNAIREKFLQFFESKQHRRLPSASLVP-DDPTVLLTIAGMLPFKPVFMGKRERP 59

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
              VTT QKCVR     ND++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+L+T  
Sbjct: 60  APRVTTSQKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKREAIGWAWELVTGV 115

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F+L   RL+++VY+EDEEA  LW++++GL   ++ ++  + NFW    TGPCGPCSEI++
Sbjct: 116 FELPPERLWVSVYEEDEEALVLWQEVAGLPPVRVRKMGADSNFWESGPTGPCGPCSEIYY 175

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           D      G      ++  R++EI+NLVFMQ  + ++     LP+ +IDTG+GLERMA VL
Sbjct: 176 DFHPE-RGEGDIDLDDDSRFLEIYNLVFMQLNRDSEGTFSELPRKNIDTGLGLERMAQVL 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPAN 294
           Q   NNY+ DL   +I+ +E ++G  Y   +     + ++I DH R+   L+ADG+LP N
Sbjct: 235 QGVPNNYETDLVFPIIRKAEVLSGRDYFKADDQQKTSFKIIGDHTRAVVHLVADGVLPGN 294

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GRGY+LRR++RR + + R+LG     +  +       MG AYP L++++ LI   L +E
Sbjct: 295 LGRGYILRRLIRRMVRHGRMLGIAGSFLPQMATVAVELMGGAYPNLLESRELILTRLATE 354

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + +F +TL+ G  LLD +L    K   ++G  AF LYDT+G PL++  ++   RGL  +D
Sbjct: 355 ESQFLQTLETGERLLDEILGRSEKR--ISGVDAFMLYDTYGFPLELTMEVAAERGLE-VD 411

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + ++ +A+E+QR RAR  +  +                  T F+GY              
Sbjct: 412 VAAYEEAMEKQRERARRAAKTVDLTQGAS-----LADLERTDFLGY-------------- 452

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          ++VK ++ +GE +E A +G  V++V DQTPFY E GGQ+GD G  
Sbjct: 453 ---------RNVASKAMVKLVLFEGEPIERASAGASVQLVLDQTPFYPEGGGQIGDRGYL 503

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + ++I DVQK+ + + +H   +ERG + T  S+   ID  +RR+   +H+ATHLL 
Sbjct: 504 SGPDLLVRIEDVQKR-DTVILHTGRIERGTVATGDSVQAQIDLADRRRSQAHHTATHLLQ 562

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG  V Q GS +  D LRFD +  K ++ AE++ +ED VN  IA+   +   +M
Sbjct: 563 AALKKVLGESVQQQGSLVAFDRLRFDFSWPKALSQAEIQQVEDLVNTWIAEAHTLSQEVM 622

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             + A A GA A  G KY   VRV+ V        S  LCGGTHV +T EI L  +VSE+
Sbjct: 623 PIDQAKARGALAFFGEKYGSEVRVIDVPG-----VSIELCGGTHVRNTAEIGLFKMVSET 677

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I +G+RRIEA+ G     +L  +D   + LA   KV    +  RV  +  + ++ Q   
Sbjct: 678 GIASGVRRIEAVAGPAVLEYLRLRDTVTRQLADEFKVQVEQIPQRVAALTSDLKQAQKQI 737

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLV 828
              K  L                    +   + + + + LKS  + L  K+   G ++L 
Sbjct: 738 DSLKAALATARAEALLGQAETTGGFRVLVADLGDTEPEALKSAAEHLLAKLGEGGAVVLG 797

Query: 829 GISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                 K S++    +  +    NA       AK+ GGGG GGRP++AQ+GG    K   
Sbjct: 798 SAPAADKVSLVAAFGKGAVAKGLNAGKFVGEVAKITGGGG-GGRPNLAQAGGKQPEKLKN 856

Query: 888 AIAGVASFL 896
           A++  +S L
Sbjct: 857 ALSEASSKL 865


>gi|255655294|ref|ZP_05400703.1| alanyl-tRNA synthetase [Clostridium difficile QCD-23m63]
 gi|296451278|ref|ZP_06893018.1| alanine--tRNA ligase [Clostridium difficile NAP08]
 gi|296880370|ref|ZP_06904333.1| alanine--tRNA ligase [Clostridium difficile NAP07]
 gi|296259884|gb|EFH06739.1| alanine--tRNA ligase [Clostridium difficile NAP08]
 gi|296428611|gb|EFH14495.1| alanine--tRNA ligase [Clostridium difficile NAP07]
          Length = 879

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/908 (36%), Positives = 538/908 (59%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR+ FLEFF+  GH +  S SL+P ND +L+  NSGM P KN F+G E P    +
Sbjct: 4   MGLNEIRSKFLEFFESKGHYVANSYSLVPNNDKSLLLINSGMAPLKNYFSGVEVPPSVRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D++NVG T RH TFFEM+GNFSFG YFK  +I+  W+ +T+  ++ 
Sbjct: 64  CTSQKCIRTG----DIENVGITARHATFFEMMGNFSFGDYFKRESIKWGWEFVTEWLNIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++++TVY+ED++++ +W K      ++++++  +DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 120 EDKIWVTVYEEDDDSYDIWAKEMNFPEERMVKLGKDDNFWEIG-TGPCGPCSEIYFDRGE 178

Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                        + +RY+E WN VF QF++  +    +L   +IDTGMGLERM  ++Q 
Sbjct: 179 EYGCDNPDCKPGCDCDRYLEFWNHVFTQFDRDEEGNYSLLENKNIDTGMGLERMGCIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K +++A E++TG+KY     N ++ R+I DH+R+ +FL++DG+LP+NEGR
Sbjct: 239 VDTIFEVDTIKSILEAVEKLTGVKYGENPKNDISIRIITDHIRAVTFLVSDGVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG  E  +  L+  +      AYP L++ +  I++ +  E+E+
Sbjct: 299 GYVLRRLLRRAARHGKLLGVKELFLQKLIDEVIKVNDKAYPVLVEKESYIKKVVGIEEEK 358

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D+G  +L+  +         +L+G  AFKLYDT+G P+D+ ++IL       +D 
Sbjct: 359 FNETIDQGTEILNSYIEVLKNEGKTVLSGQEAFKLYDTYGFPIDLTKEILEEE-HLSVDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +FN+ +E+Q+ RAR     +   + ++   S  E    + F GY  + G          
Sbjct: 418 EAFNEEMEKQKERARNARGNMDGESWKEDPLSKLESTVDSTFNGYSEIYG---------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           ++AIV+  E+V+ A  G KV +V D T FY E GGQ+GD G   
Sbjct: 468 -------------EGTIEAIVKDDELVQSAKEGDKVSIVLDNTTFYPEGGGQVGDCGLIT 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            + + L++ + +K A     H  I++ G +     +   +D + R   + NHSATHLLH 
Sbjct: 515 NENLVLEVLNTKKGANNSIKHIGIIKSGSISNGDKVKTLVDRETRMSAARNHSATHLLHK 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS +TP+ LRFD+TH + I++ ELK IE+ VN++I  +L +   IMN
Sbjct: 575 ALREVLGEHVNQAGSLVTPERLRFDITHFEAISNEELKVIEEKVNNVILSSLDIKCDIMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A   GA AL G KY D VRVVS+     G +S+ LCGGTH+++T ++ +  I+SE  
Sbjct: 635 IKEAKEKGATALFGEKYGDEVRVVSM-----GDYSTELCGGTHLTNTSQVGMFKILSEGG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEAITG+    +L  +D  +  +   LK  + N++ R+  + EE + L     
Sbjct: 690 VAAGVRRIEAITGKAVYEYLKERDGIISEVCVNLKSKEDNLIQRISSLLEENKNLSKELH 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +++++ +     S  ++  VN +++    +D   L+   D L+ K+ SG+++L  +
Sbjct: 750 DMKAKMSLQSVDSIFDSKVEVNGVNLITNKFEGMDMDTLRETADNLRDKLGSGVVVLANV 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K + ++  T+D+LD+  ++ ++ R  AK+ GG G GGRP+MAQ+G  + +K DQA+
Sbjct: 810 V-DDKVNFVVTATKDVLDKGIHSGNIVREVAKIAGGKG-GGRPNMAQAGASDVSKVDQAL 867

Query: 890 AGVASFLK 897
           +  +  +K
Sbjct: 868 SYASEVIK 875


>gi|27468219|ref|NP_764856.1| alanyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57867101|ref|YP_188758.1| alanyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251811025|ref|ZP_04825498.1| alanyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875956|ref|ZP_06284823.1| alanine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|33301694|sp|Q8CSA7|SYA_STAES RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71153555|sp|Q5HNT2|SYA_STAEQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|27315765|gb|AAO04900.1|AE016748_134 alanyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57637759|gb|AAW54547.1| alanyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805443|gb|EES58100.1| alanyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294981|gb|EFA87508.1| alanine--tRNA ligase [Staphylococcus epidermidis SK135]
          Length = 876

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/911 (37%), Positives = 512/911 (56%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +
Sbjct: 4   MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   
Sbjct: 64  VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++  +LY+T++ ED EAF++W +  GL   +IIRI    NFW + E GP GP +EIF+D+
Sbjct: 120 MEPEKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176

Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLERM +
Sbjct: 177 GSAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           + Q    NY+ DLF  +I+  E V+G KY  ++   V  +VI DH+R+ SF IADG LPA
Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPA 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  ++S
Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E+ERF +TL+ GL +L+ ++      D+++ G  AFKLYDT+G P+++ +++     L+ 
Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLS- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+ +F Q +++QR RAR       S   +     LK     +QF+GY+           
Sbjct: 416 VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDESQFVGYETTDY------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S++  I+  GE V+   +G+ +  +  +TPFYA +GGQ+ D G
Sbjct: 467 ----------------QSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVSGGQVADKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + +TDV K   G  +H  IV+ G       +   ++ ++RR +  NHSATHL
Sbjct: 511 TVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I + + V  +
Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T EI L  IVS
Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFKIVS 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771
           ES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++ EE + L 
Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQLQEEEKGLL 745

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               +R      L++   +     I ++  ++  +   + K ++S MD  + K+Q  II+
Sbjct: 746 KQLEQRNKEITSLKMGNIEEQVELINNLKVLATEVEIPNPKAIRSTMDDFKSKLQDTIIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP MAQ GG    K  
Sbjct: 806 LVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863

Query: 887 QAIAGVASFLK 897
           +A+  +  ++K
Sbjct: 864 EALRFIKDYIK 874


>gi|158337563|ref|YP_001518738.1| alanyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|205829961|sp|B0CFX4|SYA_ACAM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158307804|gb|ABW29421.1| alanyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 873

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/903 (36%), Positives = 500/903 (55%), Gaps = 49/903 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR TFL+F+   GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ +      T
Sbjct: 6   SGAQIRQTFLDFYAAKGHKILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQREAEVPRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVG+T RHHT+FEMLGNFSFG YFKE+AI  AW+L T+ + L  
Sbjct: 65  TSQKCIRT----NDIENVGQTARHHTYFEMLGNFSFGDYFKEQAIAWAWELSTEVYKLPP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+  +V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 121 ERIVPSVFEEDDEAFAIWRDKIGIPEHRIQRMGAEDNFWASGPTGPCGPCSELYYDFYPE 180

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFM++ + +  +   L   +IDTG+GLERMA +LQ   N
Sbjct: 181 -KGDDKIDLEDDTRFIEYYNLVFMEYNRDSDGKLAPLKNKNIDTGLGLERMAQILQGVPN 239

Query: 243 NYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+   K +     + +V+ DH+RS   +IADGI  +N GRGY
Sbjct: 240 NYETDLIFPIIETAAKIAGIKYKKSKAKTKTSLKVVGDHVRSVVQMIADGITASNVGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + +L+G     +  +       +  AYPE+ + + +I+  L  E+ +F 
Sbjct: 300 VLRRLIRRVVRHGQLIGIDGAFITQVAETAIASLEVAYPEVREREKIIKTELEREEAQFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RG  LL  +++   K   ++G  AF LYDT+G PL++ Q+I   +GL  +D   F 
Sbjct: 360 KTLNRGEKLLGEIMAKKPKQ--ISGKDAFDLYDTYGFPLELTQEIAAEQGLT-VDEDGFA 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++EQ+ R R+    +   T +     L      T F+GY                   
Sbjct: 417 KAMKEQQDRGRSAHKTIDL-TVQSALEQLAATVHPTDFLGYTDF---------------- 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V A++ +GE V++A +G +V++  DQTPFYAE+GGQ+GD G   G  +
Sbjct: 460 -------SAKAKVAALLVKGETVDQASAGSEVQIALDQTPFYAESGGQIGDRGYLNGKDV 512

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV +K   IF+H+  +ERG L     L   ID   RRQ+  +H+ATHLL  AL  
Sbjct: 513 VVRIEDV-QKESDIFIHYGRIERGTLEVGDKLTAQIDLACRRQVQAHHTATHLLQAALKN 571

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   + Q GS +  D LRFD  +++ +T  +++ IE  +N  IA+     T +M   +A
Sbjct: 572 IVDESIGQAGSLVAFDRLRFDFNYNQAVTPEQIQEIETQINTWIAEAHTTETEVMPIAEA 631

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V        S  LCGGTHV +T EI L  IV+E+ + +G
Sbjct: 632 KAKGAVAMFGEKYGAEVRVMDVPG-----VSMELCGGTHVKNTSEIGLFKIVTEAGVASG 686

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEAI G     +L  +D  ++ L+   K     +  R+  +  + +  Q      K 
Sbjct: 687 VRRIEAIAGPAVLEYLNVRDAVVRDLSDRFKAKPEELPERITTLQADLKTAQKQLDTLKA 746

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           QL +              +V  +   +  VDS+ LK+    L +K+  G ++L  +  E 
Sbjct: 747 QLALVKSEQLLDQAEPAGEVKVLVSQLEGVDSESLKTAAGRLLQKLGEGAVVLGSVPAEG 806

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K S++   +  +++    A       AK  GGGG GGRP++AQ+GG + +K   A+    
Sbjct: 807 KVSLVAAFSPKVIEQGLQAGKFVGAIAKQCGGGG-GGRPNLAQAGGRDPSKLADALDDAQ 865

Query: 894 SFL 896
             L
Sbjct: 866 KQL 868


>gi|329770463|ref|ZP_08261842.1| alanyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328836318|gb|EGF85984.1| alanyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 873

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/913 (36%), Positives = 518/913 (56%), Gaps = 57/913 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL+FF + GH++ PS+SL+P +DPTL++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTSTEIRRMFLDFFVEKGHKIEPSASLVPVDDPTLLWINSGVATLKKYFDGRVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  A+  AW+ LT  K
Sbjct: 61  PRITNSQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKPEAVAWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L++ +L +T++ ED EA+ +W    GL  ++IIRI    NFW + E GP GP +EIF
Sbjct: 117 WLGLEKEKLSVTIHPEDTEAYDIWHNQIGLPEERIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WN+VF Q+          LP  +IDTGMGLER
Sbjct: 174 YDRGEETDTKSPKEEMYPGGENERYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           +A+VLQ+   N+D DLF  +I   E+++G KY  NN      +VI DH+R+  F IADG 
Sbjct: 234 IASVLQDVPTNFDTDLFMPIINEIEKLSGKKYGVNNEKDEAFKVIADHIRTVVFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L      M  L   +   M   YP + ++   +++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLELNNSFMYKLTDVVAEIMNDYYPNVKESADFVKDV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +  E++RF +TL+ G  +L+G++S +    +I++G  AFKLYDT G P+++ ++     G
Sbjct: 354 ILKEEDRFHETLNEGEAILNGIVSEVKDTTKIISGKDAFKLYDTFGFPIELTEEYAEEYG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +DI  FN+ +E+Q+ RAR+      S   +   +S     G ++FIGY         
Sbjct: 414 LK-VDIDGFNEEMEKQKERARSSRQDDSSMQVQSDLYS--RIIGNSEFIGYTQFE----- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                             VSS + AIV ++  ++++    + V+VVF++TPFYAE+GGQ+
Sbjct: 466 ------------------VSSKLLAIVDKEDNLLDKYSDEEVVKVVFEKTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  + +G + ++ DV+K  +   +H   V  G  +      L +    R  +  NH+
Sbjct: 508 ADHGEILANGFKAKVLDVKKLPDKRHIHFVKVLEGEFKVGNEYELIVSRDFRLNVEKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL+ AL   +GSH+ Q GS +T + LRFD+TH  P+T  E++ +E  VN  I   L 
Sbjct: 568 ATHLLNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWNALE 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + T  M   +A   GA AL G KY D VRVVS+     G +S  LCGGTH S++ E+ + 
Sbjct: 628 IKTEEMPIAEARKLGAQALFGEKYGDIVRVVSI-----GDYSIELCGGTHNSNSSEVGIF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++SE+ + AG+RRIEA+TG+ A  +L  Q+E L+++    K +  NVV +V  +  E +
Sbjct: 683 KVISETGVAAGVRRIEALTGRAAYEYLRQQEETLRTVEKLTKANASNVVEKVTNLQTEIK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           KL       + ++   +L     +  ++  +N ++ ++   +   LK ++D  + K+++ 
Sbjct: 743 KLSKEKESLQQKIANAELNNLVNNIKEVNGINVLTSLVESENMNHLKQLVDNAKSKLENY 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II    I  + K + ++ V + + D++NA  L  + A V   G GGGRP MAQ+G  N +
Sbjct: 803 IIAFASI-NDDKVNFVVAVDKAITDKYNAGKLVNILATVCE-GRGGGRPDMAQAGAKNKD 860

Query: 884 KADQAIAGVASFL 896
             D+A   + + +
Sbjct: 861 NIDKAFEELIANI 873


>gi|312880061|ref|ZP_07739861.1| alanyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
 gi|310783352|gb|EFQ23750.1| alanyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
          Length = 880

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/906 (38%), Positives = 518/906 (57%), Gaps = 46/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FL +F++ G    PS SL+P +DPTL+FT +GMVPFK  F G + P     TT
Sbjct: 6   AAKLREQFLSYFEEKGSRRYPSFSLVP-DDPTLLFTIAGMVPFKPYFLGLKTPEVTRATT 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR     ND+DNVGRT RHHTFFEMLGNFSFG YFK   I  AW  LT+   LD  
Sbjct: 65  AQKCVRT----NDIDNVGRTARHHTFFEMLGNFSFGDYFKAEVIPWAWTFLTERVGLDPN 120

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           R+Y TVY +D+EA  +W+   GL+AD++IR+   DNFW+    GPCGPCSE+ +DQG   
Sbjct: 121 RMYATVYRDDDEAADIWRNSVGLAADRVIRLGEEDNFWAAGPVGPCGPCSELLYDQGPAF 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P        +RY+EIWNLVFMQF +        LPK +IDTGMGLER+++V+Q+  
Sbjct: 181 SCGSPDCAPGCSCDRYLEIWNLVFMQFNRDEAGVLTPLPKKNIDTGMGLERLSSVVQQVK 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           ++++ DLF+ L+  +  + G+ Y     + +  RVI DHLR+++F+IADGILP+NEG GY
Sbjct: 241 SDFETDLFRPLVDKACSLAGVSYGAGPGSDLAVRVIADHLRATAFMIADGILPSNEGTGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA+ + RLL   EP ++ LLP +   +   Y EL++ +  I + +  E+ RFG
Sbjct: 301 VLRRLLRRAVRFGRLLDLREPFLLELLPQVEATLADPYQELLRYRSTIAQVVDLEERRFG 360

Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TL++G  LL+  +  +     + L+G+VAF+LYDT+G P+++ +++    GL+ +D   
Sbjct: 361 RTLEQGSDLLEQEIGCTKRSGGKELSGEVAFELYDTYGFPVELTEEMCSEAGLS-VDQKG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F QA+E Q+ RARA S    +      +  L ++ G T F+GY++               
Sbjct: 420 FAQAMERQKERARASSKQTCATMGSNAYTELADRQGPTVFLGYEMEE------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         V A+++ G +++ A  G+  EVV D+TPFYAE GGQ+GD G   G+
Sbjct: 467 ----------ARGTVLALLRDGVLLDRAEEGETAEVVLDRTPFYAERGGQVGDQGTLSGE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+  ++ D       +  H   + +G+L    +L   +D   R  +  +H+ THLLH AL
Sbjct: 517 GLEAEVEDTVHPCGDLVAHRVRIRKGVLLPGATLEARVDGARRGDIRRHHTTTHLLHEAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
           + +LG HV Q GS ++P+GLRFD  H  P+T  +++ +ED VN+ + +NLPV TR  + E
Sbjct: 577 TQVLGDHVRQAGSLVSPEGLRFDYNHFAPLTPEQIQEVEDRVNEQVLKNLPVTTRETDLE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A GA AL   KY +RVRVVSVE      +S+ LCGGTHV +TGEI L+ +  +  I 
Sbjct: 637 TAKALGAKALFEEKYGERVRVVSVEG-----YSTELCGGTHVCATGEIGLVKVHKDEGIG 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRI+A +G+ +          L+ + S L V    +  +   + EE++ L+    + 
Sbjct: 692 AGLRRIQATSGRASLRWSQEVSTVLRDVTSLLTVDPDALCEKTASLLEEHKALERKWRQA 751

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            LQ  +  L        ++ DV  +     ++D+  L+ + D ++ +  S + +L   + 
Sbjct: 752 LLQTELMRLDAVVMGRKRVGDVEVVISFYEDLDTDLLRQIGDQVKGRFPSSVSVLATKNA 811

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           EK   V++   E +    +A  LA+    +L G  GGG+P MAQ GG         +  V
Sbjct: 812 EKFLVVIMATDEAVAKGVHAGKLAKSLGALL-GCNGGGKPQMAQVGGKFTTPLKGPLESV 870

Query: 893 ASFLKK 898
              + +
Sbjct: 871 PQMVAE 876


>gi|329724728|gb|EGG61234.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 876

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/911 (37%), Positives = 513/911 (56%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +
Sbjct: 4   MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   
Sbjct: 64  VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++  +LY+T++ ED EAF++W +  GL   +IIRI    NFW + E GP GP +EIF+D+
Sbjct: 120 MEPEKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176

Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLERM +
Sbjct: 177 GSAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           + Q    NY+ DLF  +I+  E V+G KY  ++   V  +VI DH+R+ SF IADG LPA
Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPA 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  ++S
Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E+ERF +TL+ GL +L+ ++      D+++ G  AFKLYDT+G P+++ +++     L+ 
Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLS- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+ +F Q +++QR RAR       S   +     LK     +QF+GY+           
Sbjct: 416 VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDESQFVGYETTDY------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S++  I+  GE V+   +G+ +  +  +TPFYA +GGQ+ D G
Sbjct: 467 ----------------QSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVSGGQVADKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + +TDV K   G  +H  IV+ G       +   ++ ++RR +  NHSATHL
Sbjct: 511 TVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I + + V  +
Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T EI L+ IVS
Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLVKIVS 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771
           ES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++ EE + L 
Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQLQEEEKGLL 745

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               +R      L++   +     I ++  ++  +   + K ++S MD  + K+Q  II+
Sbjct: 746 KQLEQRNKEITSLKMGDIEEQVELINNLKVLATEVEIPNPKAIRSTMDDFKSKLQDTIIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP MAQ GG    K  
Sbjct: 806 LVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863

Query: 887 QAIAGVASFLK 897
           +A+  +  ++K
Sbjct: 864 EALRFIKDYIK 874


>gi|33860604|ref|NP_892165.1| alanyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|41018179|sp|Q7V3N0|SYA_PROMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33633546|emb|CAE18503.1| Alanyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 886

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/907 (34%), Positives = 502/907 (55%), Gaps = 52/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL F+ +  H+++PS+SLIP +DPT+M T +GM+PFK +F G ++   +  T
Sbjct: 11  TGDEIRKEFLNFYHEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+T  + L  
Sbjct: 70  SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIEWAWELVTDIYGLSA 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V+ ED+++ K+WK+  G+   +II++   DNFWS  +TGPCGPCSE++FD    
Sbjct: 126 ENIIVSVFHEDDDSVKIWKEDIGIHPKRIIKLGEKDNFWSSGKTGPCGPCSELYFDFKPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ+ +    +   L   +IDTGMGLERMA +LQ+K N
Sbjct: 186 -KGVQNIDLEDGDRFIEFYNLVFMQYNRDPDGQLTDLKYKNIDTGMGLERMAQILQKKKN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ + +++ + Y        ++ ++I DH+R+   LI+DG++ +N GRGY
Sbjct: 245 NYETDLIFPIIQKASEISKIDYYSSGERTKISLKIIGDHIRAVIHLISDGVIASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG     +  L       M   YP+L      I   ++ E+ RF 
Sbjct: 305 ILRRLIRRMVRHGRLLGLKNEFLSKLASVGIKLMQENYPDLKNNCDHILSEIKIEEIRFR 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LLD ++S     +++ G  AF+LYDT+G PL++ ++I       G+D+  F+
Sbjct: 365 ETLERGEKLLDELISS--GQKMITGFKAFELYDTYGFPLELTEEIAQENN-IGVDVKGFD 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +  Q+ RA+A S  +       +   + + +  T F GYD L                
Sbjct: 422 KEMSAQKERAKAASQIIDLTLEGSLEREI-DLFDKTLFNGYDSLDSD------------- 467

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + +K I  +  +V++A  GQKV +V DQT FY E+GGQ+GD G  + + +
Sbjct: 468 ----------AEIKGIFLESTLVKQASEGQKVLIVLDQTSFYGESGGQVGDIGTILSNDL 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D   + + +F+H+ IV++GIL     +   ++   R + + NH+ATHLL  AL  
Sbjct: 518 EVVV-DNVIRKKNVFLHYGIVKKGILSLGQKVKTKVNDLARAKAAANHTATHLLQSALKV 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   V Q GS +  + LRFD   SKPIT  ++  +E  VN  I +N  +  + M + +A
Sbjct: 577 VVNESVGQKGSLVAFNKLRFDFNSSKPITKDQIFKVETLVNSWILENHSLNIKNMAKSEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A+ G KY+D VRVV V        S  LCGGTHV +T E+    I+SE  I AG
Sbjct: 637 LERGAVAMFGEKYDDEVRVVDVPS-----VSMELCGGTHVKTTSELGCFKIISEEGISAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA++GQ A  +   ++  +  L   LK +   ++ RV  +  E         K K 
Sbjct: 692 VRRIEALSGQSAFEYFSDKNSLVSQLCDLLKANPNQLLDRVNSLQSELINKNKEIQKMKD 751

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           ++          S +K+   + +   +  +D   L+S    L  K+    ++++G   +K
Sbjct: 752 EIAYFKYSSLSSSANKVGLFSLIISQLDGLDGNSLQSAALDLTSKLGDKSVVILGGIPDK 811

Query: 835 ---KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K   ++   EDL+ R  +A  L    +++  GG GGG+P+ AQ+G  + +K + A+ 
Sbjct: 812 ENRKLLFVVSFGEDLVKRGMHAGKLINDISRICSGG-GGGKPNFAQAGAKDIDKLNDALE 870

Query: 891 GVASFLK 897
                L+
Sbjct: 871 YARKDLR 877


>gi|194337650|ref|YP_002019444.1| alanyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310127|gb|ACF44827.1| alanyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 888

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/924 (35%), Positives = 502/924 (54%), Gaps = 68/924 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FL++F +  H ++ S+ +IP +DPTL+FTN+GM  FK++F G+    Y   
Sbjct: 1   MKSWEIRQSFLDYFAQKAHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGKGSRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKQEAITWAWELLTDVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +D+E+F++WK  + ++ D IIR    DNFW M ETGPCGPCSEI  D  E
Sbjct: 121 KERLYATVYQDDDESFQIWKTATDINPDHIIRFGEKDNFWEMGETGPCGPCSEIHIDLTE 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G    +    R IE+WNLVF+Q+ +Q+      LP   +DTGMG ER+A VLQ K 
Sbjct: 181 D-GSGHSLVNVGDYRVIELWNLVFIQYNRQSDGSLEPLPMKHVDTGMGFERVAAVLQGKG 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV----NHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F+ L     ++TG++Y  +         RVI DH R+ +F ++DG +P+NEGR
Sbjct: 240 SNYDSDVFQPLFDRITEITGVRYGASMDDPLDIAMRVIADHARTLTFALSDGAMPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y++ LGY EP++  L+  L   MG  +PEL + +  + + +R+E+E 
Sbjct: 300 GYVLRRILRRALRYSKNLGYNEPILHQLVGTLAASMGDVFPELRKQQETVSKIIRAEEES 359

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ + + V+  +       + G+ AFKLYDT+G P D+ + +    G + +D 
Sbjct: 360 FIVTLDRGIEIFNEVIEQVRSANSTTITGEDAFKLYDTYGFPFDLTRLMASDVGFS-VDG 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +++Q++RAR           +   +        ++F GYD L     +   + +
Sbjct: 419 EGFEHCMQQQKTRARTDRKEKHQVQDDGSQWLWFSDVHRSEFAGYDQLEMPVLITGIKHL 478

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                             K+ +V D+TPFYAE+GGQ+GD G   
Sbjct: 479 QG--------------------------------KLLLVLDRTPFYAESGGQVGDRGWIE 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL------------VLTIDYQNRRQL 583
               RLQ++D  K  + I          IL T +S+              ++D   R+  
Sbjct: 507 SATYRLQVSDTIKDGDAIVHLVTEAFDKILDTPISVDDLQLDEKELSAEASVDRHLRQDT 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHL+H AL  ILG HV Q GS +  + LRFD +H   +T AE++++E +VND I
Sbjct: 567 ECNHTATHLMHSALRRILGQHVQQKGSYVNAERLRFDFSHFSRMTEAEIEAVEADVNDHI 626

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +  PV     +  +DAIA GA A  G KY DRVRV+ +        S  LCGGTH  + 
Sbjct: 627 RRAEPVQKHADVLYDDAIAMGALAFFGDKYADRVRVIEIPG-----ISVELCGGTHADNI 681

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVE 761
           G I L  IVSESS+ +G+RRIEA+TG+ A   L  +  +L+ +   LK      V+ ++ 
Sbjct: 682 GRIGLFKIVSESSVASGVRRIEALTGKAAEKLLWKEYHELQQVRHLLKAKGDEPVLEKIV 741

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDAL 816
            + +  ++L+   +  ++   V  L+        I+    M+ ++ EVD   L+    AL
Sbjct: 742 ALMDAKKELEKELSGSRVGSLVTSLTAELDASPDISGCRVMTKVLEEVDGDTLRQAALAL 801

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874
           + +  S   +L  + ++ K +++   ++  +     +A  L R +A+ + GG GGG+P  
Sbjct: 802 RDQATSVAGLLCSV-EDGKIALVSFASDKAVREFGIDAGKLIREAAQCVHGG-GGGKPEF 859

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           A +GG N     +A     + +++
Sbjct: 860 ATAGGKNPEGIQKAFDTFLAAIRE 883


>gi|330813881|ref|YP_004358120.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486976|gb|AEA81381.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 900

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/919 (42%), Positives = 560/919 (60%), Gaps = 49/919 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R TF +FF+ N H+++ SS L+P NDPTLMF NSGMV FKN+FTG E+  Y+  
Sbjct: 4   KTLQDVRKTFKDFFKANDHQIVDSSPLVPQNDPTLMFANSGMVQFKNVFTGLEQRDYKRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW L+TKE+ L 
Sbjct: 64  TTAQKCVRAGGKHNDLENVGFTPRHHTFFEMLGNFSFGDYFKEEAINYAWQLITKEYSLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+TV+ ED+EA+ LW KI+G + D+II+I T+DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 124 KDKLYVTVFSEDQEAYDLWHKITGFNEDRIIKIPTSDNFWSMGDTGPCGPCSEIFYDHGD 183

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GGLPG+  E+G+R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLERM  VLQ  
Sbjct: 184 HLFGGLPGTKDEDGDRFIEIWNLVFMQYEQVSKDKRINLPKPSVDTGMGLERMTAVLQGT 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY IDLFK +I  +E +   K    N  ++RVI DHLR+S+FLI+DG+LP+NEGRGYV
Sbjct: 244 HDNYQIDLFKKIILDTESLFEQKLSEKNTASYRVIADHLRASAFLISDGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAM ++ +LG T+P++  +LP +   M   YP+L  AK LI+ET+ +E+ERF  
Sbjct: 304 LRRIMRRAMRHSNVLGKTDPILYKVLPTIIELMKEEYPQLENAKDLIKETVVTEEERFSS 363

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            L  GL +L+  +  +  DE L G VAFKLYDT+G P+D+ QD+L  + +  ID   F +
Sbjct: 364 LLKNGLKILNDEVKKIK-DETLPGSVAFKLYDTYGFPVDLTQDVLKEKNIK-IDHDEFKK 421

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSL-----KEKYGATQFIGYDLLRGSKFMKEDRKV 475
             E+ +  ARA   G GS   +KIWF +     KEK   T+F GY               
Sbjct: 422 LREQSKVEARASWKGTGSVGIDKIWFEIVSGQNKEKLADTEFFGY--------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                    ++ + S + +IV++ +   E   G    ++F+QT FYAE+GGQ+ DTG   
Sbjct: 467 --------GSDQIESKLLSIVKEKKASLEIREGDSASLIFNQTVFYAESGGQISDTGTIE 518

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            + +  +++D QK     +VH  +V++G L+   + +L ID + R ++  NHSATHLLH 
Sbjct: 519 SNEVLFEVSDTQKIFGTFYVHSGVVKKGTLKLGDNFILKIDKKRRDKIKCNHSATHLLHA 578

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HVSQ GS + PD LRFD +HSKPI+  E+  +  NVN ++     V T +M 
Sbjct: 579 ALREKLGKHVSQKGSYVGPDRLRFDFSHSKPISKQEIVELNKNVNAVVINGGEVKTTLMT 638

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + AI  GA AL G KY D VRVV++   +    S  LCGGTHV+    I    I++ESS
Sbjct: 639 PKKAIEQGAMALFGEKYGDEVRVVTMGNFNNKTFSIELCGGTHVTELSTIDNFEIINESS 698

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYR---- 768
           I +G+RRIEA+ G    +H    ++  K   + L      +   ++++    E+++    
Sbjct: 699 IASGVRRIEALRGDELSTHKQSLNKLAKEKETSLNSQIKGLESNIKKLNGNLEDFKDFSP 758

Query: 769 -----KLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQK 818
                KL+ ++     +  ++D   + I D            I  +  K+L++++D  +K
Sbjct: 759 EVKLVKLKSLYESLYKKNILQDSKKNIIKDYPLKDLTVRIQYIYGLSGKDLRTIVDDNKK 818

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +I S  +       + K ++ + +T++L +  +A   A+  +K L G GGGGR   AQ+G
Sbjct: 819 EIGSSAVFTFS-ELDNKLNIAVGITDELTNNLDASFFAKEISKFLKGKGGGGRKDFAQAG 877

Query: 879 GPNGNKADQAIAGVASFLK 897
           G   +        V   ++
Sbjct: 878 GEPPSNLKTVYDFVLKLVE 896


>gi|118475098|ref|YP_892193.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
 gi|205830013|sp|A0RPR0|SYA_CAMFF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118414324|gb|ABK82744.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
          Length = 845

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/897 (39%), Positives = 518/897 (57%), Gaps = 59/897 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64
            IR  +L+FF+  GHE++ S+ L+P +D TL+FTN+GMVPFK+IFTG        + T+ 
Sbjct: 2   DIRKEYLDFFKSKGHEIITSAPLVP-DDATLLFTNAGMVPFKSIFTGDVPRPNPPIRTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   L + +
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAISYAWEFVTEVLKLPKDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV+++D+EA++LW+K   +  D+I R    DNFW+M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHEKDDEAYELWQKF--IQKDRIYRFGDKDNFWAMGDTGPCGPCSEIFYDQGSEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQFE+        LPK SIDTGMGLER+  + ++K +N
Sbjct: 179 NSDEDYMGGDGDRFLEIWNLVFMQFERSKDGTMTPLPKPSIDTGMGLERVTAIKEDKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  LF  LI    ++   +YE     ++RVI DH+RS +FL+A G+    EGRGYVLRR
Sbjct: 239 YDSSLFMPLINEVAKLCHKQYEYKTGASYRVISDHIRSVTFLLAQGVNFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  +   MG  Y  L + K  ++E ++ E+ERF  T+ 
Sbjct: 299 ILRRAVRHGYLLGIKEPFMYKLVDKVVELMGEHYSYLKEKKEYVKELIKLEEERFLATIV 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            GL L +  L+      + +G+VAFKLYDT+G PLD+  D+L  +GL+ +D   F+  + 
Sbjct: 359 AGLDLFNEELAKTS-SNVFSGEVAFKLYDTYGFPLDLTADMLREKGLS-VDEAKFDALMN 416

Query: 424 EQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EQ++RA+A   G G    E   + +L E++G  +FIGYD L+                  
Sbjct: 417 EQKARAKASWKGSGDAAKESGDFKTLLEEFGENKFIGYDNLKS----------------- 459

Query: 483 DLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                 SS V A++  + + V E  +G+   V+ D TPFYA++GGQ GDT         L
Sbjct: 460 ------SSKVLALLNSEFKRVNELKNGEIGYVMLDSTPFYAQSGGQCGDT-------GML 506

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
                    +   ++ +++E         +VL     NR ++  +HSATHLL  AL  +L
Sbjct: 507 GENQALDTKKYFGLNLSMIEAKNSIKIGDIVLCEVSLNRLEIRRHHSATHLLQAALRNVL 566

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G+H++Q GS +  D LRFD +H KP+T  EL+ IE+ VN+ I +  P    IM+ ++A  
Sbjct: 567 GAHIAQAGSSVEADKLRFDFSHPKPVTKEELEKIENFVNEAILKGAPAKIEIMDIQNAKK 626

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL G KY D+VRV+++        S  LCGGTHV +  EI   +IV ES + AG+R
Sbjct: 627 SGAIALFGEKYADKVRVLTLGP------SKELCGGTHVENLNEIGSFFIVRESGVSAGVR 680

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+  + A        +++  +   LK +   +   ++++ +E + LQ      K   
Sbjct: 681 RIEAVCSKAALELSKEFRKEINDIKDSLKGADPLLS--IKKLKDEIKSLQND---LKNAS 735

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           N +DL    I  V  +          ++KS +D L+ K    ++ L G+ K+ K S+   
Sbjct: 736 NTKDLDVKDINGVKVVVSKFDG----DIKSKIDELKNKFDKVVVFLAGV-KDGKVSLGSG 790

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +++      A +L +  A ++GGGG GGR   A +GG + +K D+A+     F+ +
Sbjct: 791 -SKNTS--IKAGELVKTVAPIVGGGG-GGRDDFATAGGKDESKIDEALNAATKFISE 843


>gi|119513305|ref|ZP_01632344.1| Alanyl-tRNA synthetase, class IIc [Nodularia spumigena CCY9414]
 gi|119462040|gb|EAW43038.1| Alanyl-tRNA synthetase, class IIc [Nodularia spumigena CCY9414]
          Length = 880

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/906 (36%), Positives = 507/906 (55%), Gaps = 49/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL FF + GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ    +   T
Sbjct: 9   SGNEIRDIFLNFFAQRGHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRTAEFNRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI   W+L T+ F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKPQAIAWGWELSTQVFGLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L ++V+++D+EA+ +W+   G+   +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 124 EKLVVSVFEDDDEAYNIWRDDIGVPEARIKRMGEDDNFWVSGHTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GDENIDLEDDTRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+ Y  ++     + +VI DH+RS   +IAD I  +N GRGY
Sbjct: 243 NYETDLIFPIIETAAEIAGIDYHKSDETTQVSLKVIGDHVRSVVQMIADEIRASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RLLG     +  +     +   SAYP + Q +  I+  L+ E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLLGINSEFITQVAETAISLSESAYPNVRQREAAIKAELQREEANFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TLDRG  LL+ ++  + +     ++G+ AF LYDT G PL++ Q+I        +D   
Sbjct: 363 RTLDRGEKLLEEIIQEVKQQGKTSISGESAFTLYDTFGFPLELTQEIAAE-NQLTVDEAG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN  +++Q  RA+A    +   T +     L E   AT+FIGY    G            
Sbjct: 422 FNTEMQKQVERAKAAHETIDL-TVQGSLDKLAEHIQATEFIGYTQPVG------------ 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V+AI+  G   EEA +G ++++V +QTPFYAE+GGQ+GD G   G 
Sbjct: 469 -----------TANVEAILIDGIAQEEAEAGTEIQIVLNQTPFYAESGGQIGDKGYISG- 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              L   +  K+    F+H   +ERG +R   S+   ID   RR+   NH+ATHLL  AL
Sbjct: 517 DGVLVRVEDVKRESDFFIHFGRIERGTIRVGDSVTAQIDRTCRRRAQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++   +SQ GS ++ D LRFD    + +T+AE++ +E  VN  IA+       ++   
Sbjct: 577 KKLVDDSISQAGSLVSFDRLRFDFNCPRGLTAAEVEQVEAQVNTWIAEAHTANIEVLPIA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY + VRV+          S  LCGGTHVS+T EI +  I+SE+ + 
Sbjct: 637 EAKARGAVAMFGEKYGEEVRVIDFPS-----VSMELCGGTHVSNTAEIGIFKIISEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  +   A  
Sbjct: 692 SGVRRIEAVSGPAILDYLNVRDKVVKDLSDRFKVKPEELPERITTLQTELRNSEKQLATL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +            + +   +   + +VD + LK+  + L +KI +G ++L  + +
Sbjct: 752 KSQLAIAKSDSLLQTVESVGEYQILVAQMEDVDPESLKTAAERLLQKIGNGAVVLGSVPE 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   + ++  +   A       AK+ GGGG GGRP++AQ+GG + NK  +A+A 
Sbjct: 812 AGKVSIVAAFSAEVNKKGLQAGKFVGAVAKICGGGG-GGRPNLAQAGGRDANKLPEALAK 870

Query: 892 VASFLK 897
             S L+
Sbjct: 871 AHSDLQ 876


>gi|293366424|ref|ZP_06613102.1| alanine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319458|gb|EFE59826.1| alanine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735187|gb|EGG71479.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU045]
          Length = 876

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/911 (37%), Positives = 511/911 (56%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +
Sbjct: 4   MKASEIRQKYLNFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   
Sbjct: 64  VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++  +LY+T++ ED EAF++W +  GL   +IIRI    NFW + E GP GP +EIF+D+
Sbjct: 120 MEPEKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176

Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLERM +
Sbjct: 177 GSAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           + Q    NY+ DLF  +I+  E V+G KY  ++   V  +VI DH+R+ SF IADG LPA
Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPA 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  ++S
Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E+ERF +TL+ GL +L+ ++      D+++ G  AFKLYDT+G P+++ +++     L+ 
Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLS- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+ +F Q +++QR RAR       S   +     LK     +QF+GY+           
Sbjct: 416 VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDESQFVGYETTDY------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S++  I+  GE V+   +G+ +  +  +TPFYA +GGQ+ D G
Sbjct: 467 ----------------QSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVSGGQVADKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + +TDV K   G  +H  IV+ G       +   ++ ++RR +  NHSATHL
Sbjct: 511 TVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I + + V  +
Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T EI L  IVS
Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFKIVS 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771
           ES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++ EE + L 
Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQLQEEEKGLL 745

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               +R      L++   +     I ++  ++  +   + K ++S MD  + K+Q  II+
Sbjct: 746 KQLEQRNKEITSLKMGNIEEQVELINNLKVLATEVEIPNPKAIRSTMDDFKSKLQDTIIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP MAQ GG    K  
Sbjct: 806 LVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863

Query: 887 QAIAGVASFLK 897
           +A+  +  ++K
Sbjct: 864 EALRFIKDYIK 874


>gi|152991270|ref|YP_001356992.1| alanyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
 gi|205830162|sp|A6Q576|SYA_NITSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151423131|dbj|BAF70635.1| alanyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
          Length = 850

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/895 (38%), Positives = 502/895 (56%), Gaps = 50/895 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FL +F    H + PS+ L+P  DPTL+FTN+GMVPFK IFTG+        T+ Q
Sbjct: 2   DIRKEFLNYFASKAHTIYPSAPLVPE-DPTLLFTNAGMVPFKKIFTGEMPAEVPRATSCQ 60

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+  +L   +L
Sbjct: 61  TCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIAYAWEFVTEVLELPVEKL 120

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           ++TV++ D+EA K+W+K   +  D+I R    DNFW M +TGPCGPCSEIF+DQG E   
Sbjct: 121 WVTVHESDDEAEKIWQKF--VKKDRIKRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHFK 178

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+    E   LPK SIDTGMGLER+  + +   +NY
Sbjct: 179 GPEDYLGGDGDRFLEIWNLVFMQYERNEAGELLPLPKPSIDTGMGLERITAIKEGVLSNY 238

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  LI A   ++  KY      + RVI DH+R+ +FL++ G++ +NEGRGYVLRRI
Sbjct: 239 DSSLFMPLIDAISDLSKKKYIYKEGASFRVIADHIRAVTFLLSQGVMFSNEGRGYVLRRI 298

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RR + +  LLG  EP M  L   +   MG  Y  L +    ++E +R+E+ERF +T++ 
Sbjct: 299 LRRGVRHGYLLGLKEPFMYRLADKVAEIMGGHYSYLYEKLSTVKEQIRAEEERFYQTIEA 358

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ L +  L+      I +GDVAFKLYDT+G PLD+ +D+L  +GL  +D   F   ++E
Sbjct: 359 GMRLFEEELAKT--KTIFSGDVAFKLYDTYGFPLDLTEDMLREKGLR-LDKERFETLMQE 415

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           QR RA+A   G G       +  L       +F+GY+ L+                    
Sbjct: 416 QRQRAKAAWKGSGDVALSGDFKELL--GLKNEFVGYEKLKAH------------------ 455

Query: 485 TNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +I+  ++ +  +  E    GQK  ++ ++TPFYAE+GGQ+GD G           
Sbjct: 456 -----TIITGLLDESFKKCESLKPGQKGWILLEETPFYAESGGQIGDRGEIRLYEGEKIA 510

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             +  K         +     ++ + ++   +D   R  ++ +HSATH+LH AL  ILG 
Sbjct: 511 KVLDTKKFFDLNMSLVEAIKEVKKDEAVEAVVDKSRRE-IAKHHSATHILHSALRKILGE 569

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS +  + LRFD +H KP+ + E++ IE+ VN++IAQ +      M  + A   G
Sbjct: 570 HVTQQGSLVEANRLRFDFSHPKPLNAQEIERIENFVNEVIAQGIEAKVEEMPIDKAKEKG 629

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRVV       G  S  LCGGTHV ++ EI   +I  ES + +G+RRI
Sbjct: 630 AMALFGEKYGDVVRVVEF-----GDVSVELCGGTHVKNSAEIGSFFITKESGVSSGVRRI 684

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G  A        E L   +  +K    +++  ++++ +E + L+    K    ++ 
Sbjct: 685 EAVCGMSAVKLAKSWRESLVKASEEVKNK--DILLGIKKLKDEIKDLKQEI-KNISSVSA 741

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           ++L+  +I  V  +   I EVD+ ++K ++D L+   +   +ML     EK   ++    
Sbjct: 742 KELASQEINGVRVV---IDEVDAGDIKKIIDDLKNAHEKLAVMLFQKRGEK--VLIAAGA 796

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           + +  +  A D  +  A V+GGGG GGRP  AQ+GG N  K  +A      + K+
Sbjct: 797 KGV--KLKAGDWVKSVAPVVGGGG-GGRPDFAQAGGKNPEKIGEAKKAALEYAKE 848


>gi|42522107|ref|NP_967487.1| hypothetical protein Bd0501 [Bdellovibrio bacteriovorus HD100]
 gi|48428503|sp|P61698|SYA_BDEBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|39574638|emb|CAE78480.1| alaS [Bdellovibrio bacteriovorus HD100]
          Length = 907

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/938 (39%), Positives = 524/938 (55%), Gaps = 76/938 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  F+++F+KNGH+++PSSSLIP NDPTL+F N+GM  FKN F G EK  Y   
Sbjct: 1   MKSSEIRNAFIKYFEKNGHKVVPSSSLIPENDPTLLFANAGMNQFKNTFLGLEKRDYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI  AW+ LTKE  + 
Sbjct: 61  VTAQKCVRAGGKHNDLENVGFTARHHTFFEMVGNFSFGDYFKKDAIHFAWEFLTKELAIP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+TV+  D+EA  +W    G+  ++I R    DNFW M +TGPCGPC+EIF+D G 
Sbjct: 121 KEKLYVTVHISDDEAADIWHNQEGVPRERIFRF-DKDNFWKMGDTGPCGPCTEIFYDHGP 179

Query: 182 C---IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
               I     G     +R++EIWNLVFMQ+ +        LPK S+DTG GLERM+  +Q
Sbjct: 180 KAGTISDPFKGIEAGEDRFVEIWNLVFMQYFENPPGTLTPLPKPSVDTGGGLERMSAAMQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI------------VNHRVIVDHLRSSSFLI 286
              NNYD DLF+ +IQ + ++  ++Y  +                 RV+ DH RS+SFLI
Sbjct: 240 GVFNNYDTDLFQPMIQLACKIGNIEYISDKEVLAKNPAAAEVTSALRVLADHCRSTSFLI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG LP+NEGRGYVLRRIMRRA+ Y R L   +  +  +  AL   MGS YPEL   +  
Sbjct: 300 ADGALPSNEGRGYVLRRIMRRAIRYGRKLSADKSFLPGMAEALIESMGSVYPELKTRRDH 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDI 404
           I  T+R E++RF  TLD+G  +L+  L       I  L+G+V F++YDT+G P D+ + I
Sbjct: 360 ILNTIRDEEDRFIATLDKGTAILEDELKKAKSKGIKELSGEVVFRMYDTYGFPADLTRVI 419

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT----QFIGY 460
              +G   ++  +F + +E+ R++++A   G   G  E       + Y  +     F+GY
Sbjct: 420 ANEQG-IEVNEAAFEKEMEDNRAKSKASWKGKSMGADEAHMIKFAKDYLQSGKSVTFLGY 478

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +   G                          V  +      V+E  +G    ++ + T F
Sbjct: 479 EGTIGD-----------------------GKVMGLSNGQAEVQELKTGDTGLMILNATTF 515

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y E GGQ GD G  + D  R ++ +   K + I +HH  +E G  +   ++V  +D   R
Sbjct: 516 YGEGGGQSGDVGYIMHDTNRARVINT-TKIDDIVLHHVEIEHGSFKVGTAVVTGVDPVER 574

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           R  + NHSATHLLH AL  +LG+HV+Q GS +     RFD TH+KP++S E+K IED VN
Sbjct: 575 RNTAANHSATHLLHAALRKVLGTHVTQAGSLVDSQKTRFDFTHNKPVSSEEIKKIEDLVN 634

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           + IA+  PV T +M+ + A+  GA AL G KY   VRV+++     G  S  LCGGTHV 
Sbjct: 635 EQIARCNPVQTEMMSHKAALEKGAMALFGEKYASDVRVLTM-----GDFSCELCGGTHVK 689

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS---LASFLKVS----- 752
           +T EI L  IVSE+ + +G+RRIEAIT   A  ++M     L      A F K       
Sbjct: 690 NTSEIRLFKIVSEAGVSSGVRRIEAITADNALQYMMSAVTHLDDALAAAGFQKSPHYIKH 749

Query: 753 ------QGNVVGRVEEIWEEYRKLQLIHAKRK-LQLNVEDLSCHKI-------ADVNFMS 798
                    +  RVE + ++ ++L+    K +  Q+NV+DL+ + +       A    + 
Sbjct: 750 LETTGETATLANRVESLKDQVKQLEKEMKKLQGGQVNVDDLAANALTFKTKAGASAKLVL 809

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             +   D + L  V D L+ KIQSGI+++VG   +    +++ V++++     A DL + 
Sbjct: 810 ADVPLDDRQVLAEVTDHLKNKIQSGIVVVVG-QGDGSHPIIVSVSKEISGETKAGDLLKE 868

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            A V+GG G GGRP  AQ   PN  + ++A + V S L
Sbjct: 869 VAGVMGGKG-GGRPDFAQGAAPNRAQLNEAFSKVKSML 905


>gi|169334468|ref|ZP_02861661.1| hypothetical protein ANASTE_00871 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259185|gb|EDS73151.1| hypothetical protein ANASTE_00871 [Anaerofustis stercorihominis DSM
           17244]
          Length = 874

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/905 (36%), Positives = 519/905 (57%), Gaps = 46/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +++ +R  FLEF++  GH  L S SL+P ND +L+  NSGM P K  F G+E P  + VT
Sbjct: 5   SLNELRKMFLEFYESKGHLRLESFSLVPHNDKSLLLINSGMAPLKPYFIGEEVPPKKRVT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R      D+DNVG+T RH TFFEMLGNFSFG YFK+ AI  AW+ LT++  LD+
Sbjct: 65  TCQKCIRT----PDIDNVGKTARHGTFFEMLGNFSFGDYFKKEAIAFAWEFLTEKIGLDK 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY+ D+EA ++WK   GL+ ++I R+   DNFW +   GPCGPCSEI+ D+GE 
Sbjct: 121 DKLYVSVYENDDEAAEIWKNDIGLTDNRITRLGKEDNFWEIG-LGPCGPCSEIYVDRGEE 179

Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                P      + +RY+E+WNLVF QF++  +     L   +IDTGMGLER+A  +QE 
Sbjct: 180 YGCDRPTCGVGCDCDRYMEVWNLVFTQFDKDKEGNYNKLEHPNIDTGMGLERLAAYVQEV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N +++D  ++++    +++G KY    N+ V+ RVI DH+RSS F+ +DGIL +NEGRG
Sbjct: 240 DNIFEVDTIRYILDYICEISGKKYGVNENDDVSIRVITDHIRSSVFMASDGILTSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVL+RI+RRAM + +LLG     M  +   +    G AYP L + +  I + +  E+E+F
Sbjct: 300 YVLKRILRRAMRHGKLLGIEGHFMEGVAKKVIEISGEAYPALREKETTILKLINIEEEKF 359

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +T+++GL ++D ++++L   + L G  AFKLYDT+G PL++ ++IL  +GL  +D   F
Sbjct: 360 NETVNQGLSMIDELIANLK-GDTLGGLDAFKLYDTYGFPLELTEEILEEKGLK-VDKNGF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +A++EQ+ +AR+        + +    +      +T+F GY+ L               
Sbjct: 418 EKAMQEQKDKARSARNNKEIVSYKGDLTNFIANLPSTEFSGYESLSD------------- 464

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        V  I++  E ++    G+   V+F++TPFYA +GGQ+ D G    D 
Sbjct: 465 ----------KGKVIEIIKDNEAIDILNEGEIGLVIFNRTPFYATSGGQVHDIGKIEDDK 514

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +  ++  V K  +  FVH   +  G L  +    +T+D QNR     NHSATHLLH AL 
Sbjct: 515 VNAKVKSVTKSGDK-FVHEVEIISGSLEADKEYSMTVDKQNRLNTERNHSATHLLHKALK 573

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +  + LRFD +H + +T+ EL  IE  VN  I     V     + ++
Sbjct: 574 EVLGEHVNQAGSYVDSERLRFDFSHFEKVTNEELDEIEKRVNAEILNKDEVNYFETSIDE 633

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA AL G KY   VRVV +     G +S  LCGG HV++T +I +  I+SESS+ +
Sbjct: 634 ARKLGATALFGEKYGSNVRVVKM-----GDYSIELCGGCHVNNTNDISMFKILSESSVAS 688

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEAITG+ A    + +  +L+++   L+++  N++ +V+E+  + + L       +
Sbjct: 689 GVRRIEAITGKCAIEESLEKYHELQTIKDKLRLNNNNIIEKVDELLNKNKSLLKELEAFR 748

Query: 779 LQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            + N + +S        +     +   +  ++  +L+ + D ++ K+++ I+ LV ++ E
Sbjct: 749 KEANKDVVSGIIDNAFDVNGTKCVFAKVDGLNVNDLRELSDKVKDKVENVIVFLVSVAGE 808

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K   +     E + D FN     +  A  +G G GGGRP MAQ+G  + +KAD A+    
Sbjct: 809 KGFMIASASKEAVKDGFNCGKFIKDVAVSIGSG-GGGRPDMAQAGIKDISKADMALENAK 867

Query: 894 SFLKK 898
            F+K+
Sbjct: 868 GFIKE 872


>gi|227833217|ref|YP_002834924.1| Alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184203|ref|ZP_06043624.1| alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454233|gb|ACP32986.1| Alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 895

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/928 (35%), Positives = 488/928 (52%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F + F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MKTHEIRERFTQHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFANG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTNSVE 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
                LD  RL++TVY +D+EA  +W    G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 DGGLGLDPERLWVTVYLDDDEAADIWHDKIGVPRERIQRLGMEDNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGM 228
           I++D+G    G   G  E+ +RY+EIWNLVFMQ E+         +    LPK +IDTGM
Sbjct: 176 IYYDRGPEY-GQDGGPVEDDDRYMEIWNLVFMQNERGEGIGKGNFEIIGELPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSF 284
           G+ER+A +LQ   N Y+ DL + +I  +E++TG KY       +++  RV+ DH R+   
Sbjct: 235 GIERVACILQGVDNVYETDLLRPVIDVAEELTGAKYVPDAPKEDLIRFRVVADHSRTGMM 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NEGRGY+LRR++RR +  A+LLG     M   +  +   M  +YPE+ + +
Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSAKLLGAKGETMERFMNTIMDTMTPSYPEIAENR 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK------DEILNGDVAFKLYDTHGLPL 398
             I     +E++ F KTL+ G  L D  ++ L         ++L+G+ AF+L+DT+G P+
Sbjct: 355 ERILRVALAEEKAFLKTLESGTKLFDEAVTELKNTSRAATPKVLSGEKAFELHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++    GL  +D+  F+ A+ EQR RA+A +     G  +   +        T F 
Sbjct: 415 DLTLEMAQEAGLT-VDMEGFDAAMGEQRRRAKADNQAKKHGHADLSLYREWVDNHPTLFT 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY+ L                          + V  +V+ GE V E  +G  VEV+ DQ+
Sbjct: 474 GYETLES-----------------------EAKVLGLVRDGEKVSEVQAGDTVEVILDQS 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           P YAEAGGQ  D G  I     L++ DVQK  + ++VH A V  G L     +   +D Q
Sbjct: 511 PLYAEAGGQTADRGRIIAGETLLEVNDVQKIGKKLWVHKATVTAGGLELGNGVTAAVDEQ 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      HSATHL+H AL  +LG    Q GS   P  LRFD  ++  +T  +L  I   
Sbjct: 571 WRHGAVQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTDQLTQEQLDEIALV 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  + Q+ PV T   + + A   GA AL G  Y   VRVV +    GG  S  LCGGTH
Sbjct: 631 TNQAVDQHFPVNTIETSLDKAKEMGAMALFGENYGSEVRVVEM----GGPFSIELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +T EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV   ++  
Sbjct: 687 VKNTAEIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPE 746

Query: 759 RVEEIWEEYRKLQLIHAKR-KLQLNVEDLS----CHKIADVNFMSHII-SEVDSKELKSV 812
           R+ ++ E+ +  +   A+  K QL  +          I D   ++  +   V+  +L+++
Sbjct: 747 RIAQLTEKLKAAEKQIAELHKAQLMSQTAEMISTAKTINDFTLVAVKLPKGVNGGDLRTL 806

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
              ++ ++     +++L   ++  K   ++  T+   +R   A DL +L +  +  G GG
Sbjct: 807 ASDIKNRLGDVAAVVVLASENEGGKMPFIVGATKAANERGVKAGDLVKLVSGYV-DGKGG 865

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G+P MAQ  G N      A   V   L+
Sbjct: 866 GKPDMAQGSGVNIEGLQAAFDAVRDELE 893


>gi|21220002|ref|NP_625781.1| alanyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|256788900|ref|ZP_05527331.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289772786|ref|ZP_06532164.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|22096206|sp|Q9KXP9|SYA_STRCO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|8249960|emb|CAB93381.1| alanine tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289702985|gb|EFD70414.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 890

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/922 (36%), Positives = 503/922 (54%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSAQDKG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA ++W  + G+ +++I R+   DN+WSM   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYQDDDEAERIWHDVVGVPSERIQRLGKKDNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+         +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKEEFEILGELPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I  + ++TG+ Y       V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVINKATELTGVAYGDAQASDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELVTDRERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+  F KTL  G  +LD  +S        +L GD AF L+DT G P+D+  ++  
Sbjct: 355 KVALAEENAFLKTLKAGTNILDTAVSDTKASGGTVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT-EKIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G      +  + +K GAT F+GY     
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAQAKKTGHAGAGAYREIADKAGATDFVGYTDTES 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGILVDGASSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG   +  G  +++ D QK   G++VH  +V+ G +        +ID + R+ ++
Sbjct: 511 GQIGDTGRIRVDTGAVIEVRDCQKPVPGVYVHKGVVQVGEVTVGAKAQASIDDRRRKAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A S L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYSFLAREHTVVAQLQELIKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    K + +  ++       S   +  V  ++  +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAGGLADSAKDVRGVALVTGQVPDGTTADDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           +IQ G   ++ L       K   +I   E   +R   A DL R +AK LGGGG GG+P +
Sbjct: 806 RIQGGRAAVVALFTTVN-GKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDV 863

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ GG N      A+  V   +
Sbjct: 864 AQGGGQNAAAIGDAVDAVERLV 885


>gi|260893293|ref|YP_003239390.1| alanyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260865434|gb|ACX52540.1| alanyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 874

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/907 (38%), Positives = 529/907 (58%), Gaps = 49/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL++F++ GH +LPS+SLIP  DP+L++T +GMVPFK  FTG  KP ++ V
Sbjct: 1   MEAKEIRQRFLDYFRRKGHVILPSASLIPAGDPSLLWTAAGMVPFKPYFTGAAKPEFRRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D+++VG+T RH TFFEMLGNFSFG YFK  AI +AW+ +TKE  LD
Sbjct: 61  ATCQKCLRT----QDIESVGKTARHLTFFEMLGNFSFGDYFKAEAIAMAWEFVTKELGLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ +V+++DEEAF+LW K  G+  ++I+R+  + NFW +   GPCGPCSEI++D G 
Sbjct: 117 IDRLWFSVFEDDEEAFELWCK-MGVKPERIVRLGRDTNFWEIG-VGPCGPCSEIYYDFGP 174

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G       + +RY+EIWNLVF+Q+ +  K     L    IDTGMGLER+ATVLQ  
Sbjct: 175 AFACGPDCHVGCDCDRYLEIWNLVFIQYYRDEKGNYLPLENKGIDTGMGLERVATVLQGV 234

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           T+ +  DLF+ ++ A+E+              +VI DH+R+ +F +A+G+LP+NEGRGYV
Sbjct: 235 TSPFATDLFRDIVAAAERELRSP---VPNRRVKVIADHVRAVTFGVAEGVLPSNEGRGYV 291

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RR++RRA+ Y  L G  EP +  +  A+C +MG  YPEL+  +  I   +R+E+ERF  
Sbjct: 292 IRRLLRRALLYGVLAGREEPFLGKVAAAVCDKMGEVYPELVANREHILRVIRAEEERFLG 351

Query: 361 TLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL +G+ LL+  +        ++L G+ AF+LYDT+G PL++ ++I   +GL  +D   F
Sbjct: 352 TLSQGMELLNRNIEQVLARGGKVLPGEEAFRLYDTYGFPLELTEEICAEKGL-AVDKEGF 410

Query: 419 NQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
            + +E QR RAR     +   G  E+ +  L+E+ G+  F+GY+ L              
Sbjct: 411 KREMEAQRERARRARETVEYLGERERFYRELREEKGSVDFVGYEQL-------------- 456

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V A+V++ +    A +G++VEVV D TPFYAE GGQ+ D G     
Sbjct: 457 ---------NTRSRVVALVKEAKPQSSASAGEEVEVVLDVTPFYAEKGGQVSDKGVLRFP 507

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +  V++  EG+ VH   V++G L+    +   +D + RR+ + NH+ATHLLH AL
Sbjct: 508 SGEALVEYVEQPVEGMVVHRVKVQKGELKVGDEVEAAVDAERRRRTARNHTATHLLHQAL 567

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV Q GS + PD LRFD  H + +T  E+K +E  VN+I+   LPVVT   + E
Sbjct: 568 KEILGPHVKQAGSLVAPDRLRFDFDHYQALTPEEIKRVEKRVNEIVLAALPVVTFTTSLE 627

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA AL G KY + VRVV +     G +S  LC GTH+ +T E+ +  IV+E+S+ 
Sbjct: 628 EAQAMGAVALFGEKYGETVRVVKI-----GDYSIELCAGTHLRNTAEVGVFKIVAEASVA 682

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           A  RRIEA+TG+RA ++    ++  + +A  LK     +  +VE   +E + L   +   
Sbjct: 683 ANTRRIEAVTGERALAYFEELEDDYRRIAFLLKAPARGLSQKVEAWLQEMKALARENEAL 742

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L +           +I  V  ++  +   D+  L+S+ D L++K+ +  ++L+G S 
Sbjct: 743 RDKLALYTMQELLDKVQEIDGVKVLAAKVEAPDTARLRSLADLLREKLGNASVVLLGASG 802

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K ++++  T   + R  NA  + +  A+V+ GGG GGR    Q+GG N  +  +A+  
Sbjct: 803 DGKVNLVVAATPGAVARGINAAQIVKAMAQVVEGGG-GGRAEFGQAGGKNPGRLGEALRL 861

Query: 892 VASFLKK 898
               L++
Sbjct: 862 GQELLRQ 868


>gi|119356090|ref|YP_910734.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|205830021|sp|A1BD33|SYA_CHLPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119353439|gb|ABL64310.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 888

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/924 (35%), Positives = 500/924 (54%), Gaps = 68/924 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y   
Sbjct: 1   MNSREIRQSFLDFFDRKGHTIVRSAPVIPLDDPTLLFTNAGMNQFKDVFLDKGTRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAISWAWELLTSVWHLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +DEE++ LW++ + +  D II+    DNFW M ETGPCGPCSEI  D  E
Sbjct: 121 KERLYATVYYDDEESYLLWQEETDIPHDHIIKFDEKDNFWEMGETGPCGPCSEIHIDLTE 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G P  +    R IE+WNLVF+Q+ +Q       LP+  +DTGMG ER+  V+Q K 
Sbjct: 181 D-GSGKPLVNAGDYRVIELWNLVFIQYNRQADGRLEPLPQKHVDTGMGFERVCAVMQGKA 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKYE----GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F+ L     ++TG+ Y       + +  RV+ DH R+ +F + DG +P+NEGR
Sbjct: 240 SNYDTDVFRPLFDRITEITGVSYNASLDDPSDIAMRVLADHARTLTFALTDGAMPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y++ LG +EPL+  L+  L   MG  +PEL + +  +   +R+E+E 
Sbjct: 300 GYVLRRILRRALRYSKTLGCSEPLLYRLVETLAASMGDVFPELRKQQQAVSRIIRAEEES 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ + + +++ +      +++GD AF+LYDT G PLD+ + +    G   +D 
Sbjct: 360 FLATLDRGIEIFNELIAAVRSRGTTVVSGDDAFRLYDTFGFPLDLTRLMAAEAGFE-VDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ ++EQ++RAR           ++  ++       + F GY  L     +      
Sbjct: 419 EGFDRCMKEQKTRARQDRRDKQHLKGDEGEWTWFSAERTSVFTGYHSLEELASITGVSIF 478

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                             ++ VV D+TPFYAE+GGQ GD G   
Sbjct: 479 S--------------------------------DRLLVVLDRTPFYAESGGQCGDRGWIE 506

Query: 536 GDGIRLQITDVQKKAEGIFV------------HHAIVERGILRTEMSLVLTIDYQNRRQL 583
               RL+++D +K  + I                +  +      +++   ++D  +R+  
Sbjct: 507 TAAYRLRVSDTRKDGDMIVHLVTEVRDSVSDGAISPADLSFDEGKLACRASVDRSDRQGT 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL   LG HV Q GS ++ + LRFD +H   +TS EL  +E  VN+ I
Sbjct: 567 ERNHTATHLLHAALRRTLGQHVQQKGSFVSSERLRFDFSHFARLTSEELAIVESEVNEQI 626

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
               PVV    +  ++AIA GA A  G KY DRVRVV +        S  LCGGTHV S 
Sbjct: 627 RSAEPVVKHQDIPYDEAIARGALAFFGDKYADRVRVVEIAG-----LSVELCGGTHVDSI 681

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761
           G+I L  IVSESS+ +G+RRIEA+TG+ A   L  +  +L+ +   LK+     V+GR+ 
Sbjct: 682 GQIGLFKIVSESSVASGVRRIEALTGKAAEVLLWKEYRELQDIRQMLKLKADEEVIGRIA 741

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           E+ +  ++L+      + +     L     +   +  + FM+  +  VD   L+  + AL
Sbjct: 742 ELADSKKELEKQLQVYRTEALSGILQRSLDAAESVGSIRFMTLRLEHVDQDSLRQAVLAL 801

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874
           ++K  +   +L    ++ K S+     E  +     +A  L R +A  + GG GGG+P  
Sbjct: 802 REKDPASTGLLC-TEEDGKVSLTAFAGERAVGEFGLDAGKLVREAAAFVRGG-GGGKPEF 859

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           A +GG +     +A    A+ +++
Sbjct: 860 ATAGGKDPEGIQKAFDSFAASVRE 883


>gi|315638099|ref|ZP_07893284.1| alanine--tRNA ligase [Campylobacter upsaliensis JV21]
 gi|315481947|gb|EFU72566.1| alanine--tRNA ligase [Campylobacter upsaliensis JV21]
          Length = 844

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/896 (39%), Positives = 517/896 (57%), Gaps = 58/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IRT FL FF   GHE+ PSS L+P +D +L+FTN+GMVPFKNIFTG+         T+ 
Sbjct: 2   DIRTQFLNFFASKGHEITPSSPLVP-DDASLLFTNAGMVPFKNIFTGEVPRPTPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+  I  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEVIAYAWEFVTEVLKLPKER 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV+++D+EA+ LW+  + +  ++I R    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHEKDDEAYTLWQ--AHIEKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  + + K +N
Sbjct: 179 HSSEDYMGGDGDRFLEIWNLVFMQYERSSDGTLSPLPKPSIDTGMGLERVYAIKEGKLSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  LI     + G  Y   +  ++RVI DH+RSS+FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPLINQIASLCGRAYVYESGASYRVIADHIRSSAFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  LC  MG  Y  L + K +I+E ++ E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGLKEPFMYKLVDVLCELMGGHYAYLNEKKEVIKEQIKLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +G+ L +  L+      I +G++AFKLYDT+G PLD+ QD+L  +GL+ ID   F + + 
Sbjct: 359 KGIELFNEELAKT--QNIFSGEIAFKLYDTYGFPLDLTQDMLREKGLS-IDEECFERLMS 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ+ RA+A   G G       +  L E++G  +F+GY                       
Sbjct: 416 EQKERAKAAWKGSGDKAVSGDFKILLERFGKNEFVGYTQ--------------------- 454

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  ++ E+   GQ   V  D+TPFYA +GGQ+GD G    + I   
Sbjct: 455 --KACESQILALLDENFKMQEKLHKGQTGWVFLDKTPFYANSGGQVGDKGFLGENEISDT 512

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
               +     I   +       L+ +  L+  ID   R Q++ +HSATHLLH+AL  ILG
Sbjct: 513 QKFFELNLSKITAKN------ELKLDEKLLAHIDEGKREQIARHHSATHLLHYALRKILG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           +H++Q GS +  + LRFD  H K +T  EL+ IE+ VN++I+ + P +   M+ +DA  S
Sbjct: 567 AHIAQAGSLVEFNKLRFDFNHPKALTKEELEKIENLVNEMISSSYPALLEEMSLDDAKKS 626

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY ++VRV+S+        S  LCGGTHV+++ EI   +I+ ES + AG+RR
Sbjct: 627 GAIALFSEKYENKVRVLSLGE------SKELCGGTHVNNSAEIGSFFILKESGVSAGVRR 680

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A ++     ++L+SL   LK +  +++  + ++  E  KL+          N
Sbjct: 681 IEAVVSKAAHAYAKNALKELESLKIELKNN--DLLSGISKLKNEISKLKNELKN----SN 734

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             +L    I  V      I   D   +K+++D  + + +  +I+L+   KE K S+   V
Sbjct: 735 QNELKSENIKGVQICIAKIENGD---IKAMIDHFKNQFEKAVILLI-QEKEGKISLAAGV 790

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                    A +L +  A +L GG GGG+   A +GG +  K D+A+    SF++K
Sbjct: 791 KNAP---LKAGNLVKNIAMIL-GGNGGGKDDFATAGGKDLTKIDEALKEAKSFIEK 842


>gi|146296899|ref|YP_001180670.1| alanyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|205830010|sp|A4XKP4|SYA_CALS8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145410475|gb|ABP67479.1| alanyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 881

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/909 (38%), Positives = 518/909 (56%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDKVGKTARHATFFEMLGNFSFGDYFKKEAITWAWEFVTEILKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL   +I R+   DNFW +  TGPCGPCSEI+FD+G 
Sbjct: 119 KERLWVTIYEEDDEAFEIWHKEVGLEEGRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGV 177

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G    G   + +RY+E WNLVF QF++        L   +IDTGMGLER+A ++Q 
Sbjct: 178 DKGCGKETCGIGCDCDRYVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQG 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     ++TG +Y  +    V+ RVI DH+R + F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRDKICEITGCEYGKDSEKDVSIRVITDHIRGTVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     S YPELIQ    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRAARHGRMLGKRETFLHLIVDTVIEAYKSPYPELIQKGEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL LL+  +  L   K+ +L G++AFKLYDT+G PLD+ ++I   +G+  +D 
Sbjct: 358 FNQTIDIGLELLENEIDRLKKNKENVLKGEIAFKLYDTYGFPLDLTREIAAEKGII-VDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ ++EQ+ RAR     L +   + I  +++++   T F+GYD L            
Sbjct: 417 AGFDRLMQEQKERARMAQKELENIGWKDINITIEDEV-ETVFVGYDTLE----------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  I    + V  A  G    ++ D+TPFYAE+GGQ+ D G   
Sbjct: 465 ------------TQSRVLKIFSNDDEVSYAKEGDICYIILDKTPFYAESGGQVADKGVLE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +G   ++ DV+K  +G  +H A V +G +  + ++   ++   R     NH+ATHLLH 
Sbjct: 513 TEGGVAEVLDVKKGPKGTILHKAKVIKGEIAVDNNIFAKVNKNLRLATMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           +L  ILG H +Q+GS + P+ LRFD  H +P++  ++  IE  VNDII Q +PV     +
Sbjct: 573 SLRRILGEHATQSGSLVEPERLRFDFAHFEPLSEEQIVEIEKMVNDIIQQAIPVEKIQTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + AI  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSAIKMGATALFDEKYSNIVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK + + LK +    +V ++ ++ E    L+   
Sbjct: 688 VAAGVRRIEAITGNKVYEFMLNNQKVLKDIRNKLKANSDSEIVAKINQLEERITALEKEL 747

Query: 775 AKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL L   +LS       +I +   + +     D+  ++ + D +++K  S  I+L  
Sbjct: 748 EKHKLLLVDNELSLLYNEGLQIGEFRLIINKKETHDTDYIRLLTDRVREK-DSKAIVLNL 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I ++KKA VL+  +++ + +  +     +   +VL GG GGGRP  AQ GG      D A
Sbjct: 807 IKQDKKAIVLMACSKEAVKKGIDCGKTVKDVCEVL-GGKGGGRPDFAQGGGNKIENLDLA 865

Query: 889 IAGVASFLK 897
                  +K
Sbjct: 866 AQRAIELIK 874


>gi|118444620|ref|YP_878353.1| alanyl-tRNA synthetase [Clostridium novyi NT]
 gi|205830036|sp|A0Q151|SYA_CLONN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118135076|gb|ABK62120.1| alanyl-tRNA synthetase [Clostridium novyi NT]
          Length = 879

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/908 (37%), Positives = 513/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +L+FF+  GH  LPS S++P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEM+GNFSFG YFK   I  AW+  T+   L 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHATFFEMMGNFSFGDYFKNEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179
           + +LY+T+Y +D+EA+ +W   + +    I R+   DNFW     GPCGPCSEI F  D 
Sbjct: 120 KEKLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDN 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE           + +R +E WNLVF QF++        L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEIKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++     +   KY  +    V+ R+I DH+RS S +I+D +LP+NEGR
Sbjct: 239 VETIFEVDTIKSILDKVAALANTKYGEDELKDVSLRIITDHVRSVSVMISDEVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG     +  ++ ++    G AYPEL + K  I++ +  E+ER
Sbjct: 299 GYVLRRLLRRAARHGKLLGIKGTFLYKIVDSVIENSGEAYPELKEKKDYIKKVISIEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +  L K+   +L+G+  FKLYDT+G PL++ ++IL  +G+  +D+
Sbjct: 359 FAETIDSGMEILKEYIEDLEKNNKKVLSGEKVFKLYDTYGFPLELTEEILEEKGIT-VDM 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            SFN+ ++EQR RARA         T+            T F GY+ L            
Sbjct: 418 DSFNKEMKEQRERARAARSESTYMGTDVKILDTIPSEIETTFDGYENLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       + S VK I++     +    G+K  +V D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------LQSKVKVIIKDDAFADCINKGEKGIIVTDRTPFYAEMGGQIGDKGTIS 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG   ++ D +    G  VH   V  G ++ E  ++L +D + R  +  NHSATHLLH 
Sbjct: 515 ADGFMAKVQDCKNNIGGKIVHFVEVTEGSIKLEDEVLLEVDRKRRENIGKNHSATHLLHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  D LRFD TH + +T  ELK +ED VND I     VVT+ M 
Sbjct: 575 ALRKVVGEHVHQSGSYVDEDKLRFDFTHFESLTHEELKKVEDLVNDTIESVWDVVTKEMT 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  SGA AL   KY D+VRVV +     G  S+ LCGGTH+S+ G+I L  IVSES 
Sbjct: 635 IEEAKNSGAMALFDEKYGDKVRVVKM-----GDFSTELCGGTHISNVGKIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG RRIEA+TG +A   +  + + L+ +AS LK S+ +++ R+ +   E +      +
Sbjct: 690 IAAGTRRIEAVTGHKALEFIEHKSDLLRQIASMLKCSEKDIINRLNQQNAELKDKDKEIS 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +L          +  ++  V      + +VD + L+++ D ++ KI+SG+++L G 
Sbjct: 750 ALKSKLASGSEDDILKNIKEVKGVKLAVAALKDVDGEALRNLGDKIKNKIESGVVVL-GS 808

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   + + ++D++    +   + R  AK+ GGGG GGRP MAQ+GG    K + AI
Sbjct: 809 EVEGKVQFIAMASKDVVSKGVHCGTIVREIAKIAGGGG-GGRPDMAQAGGRLPEKLNDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 NEVENIME 875


>gi|295094821|emb|CBK83912.1| alanyl-tRNA synthetase [Coprococcus sp. ART55/1]
          Length = 887

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/901 (37%), Positives = 496/901 (55%), Gaps = 40/901 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEF +  GH  + S SLIP ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFMESKGHLRMKSFSLIPHNDNSLLLINSGMAPLKPYFTGQEVPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD+ 
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWTWEFLTEVVGLDKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G+ AD+I R    DNFW     GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYQDDDEAFDIWNKEIGVDADRIFRFGKEDNFWEHG-AGPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG     + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFNNDGHNNYTELEQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++ G++Y  +    V+ R+I DH+RS +F+ +DGI+P+NEGRGY
Sbjct: 241 SIFDVDTIKALRDKVCEMAGVEYETDHEKDVSIRLITDHIRSVTFMTSDGIVPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +      AYPEL + K  I   +  E+E F 
Sbjct: 301 VLRRLLRRAARHGRLLGIKGKFLSELAKTVIEVSEDAYPELSEKKEYIFNKIDKEEESFN 360

Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D GL +L   +       +++L+GD AFKLYDT+G PLD+ ++IL   G   +D   
Sbjct: 361 KTIDTGLAILKDYIDETKAAGEKVLSGDKAFKLYDTYGFPLDLTKEILEEEG-IEVDEDR 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + +  Q+  AR           +   +        ++F+GYD L     +      + 
Sbjct: 420 FTECMNIQKETARKARKTTTYMGADATVYEQLPVDMTSEFVGYDKLTYKSTISAITTEVG 479

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +                  ++  + +    G +  V+  +TPFYA  GGQ+GD G    +
Sbjct: 480 EGDD---------------KKSVLADTVSEGAQASVIVPETPFYATMGGQIGDKGIIKTE 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + D  K   G   H   VE G L       LT+D +NR  +  NHSATHLL  AL
Sbjct: 525 NGTFVVEDTVKVVGGKIAHIGYVESGELNVGDEAELTVDAENRALICNNHSATHLLQRAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS + P  LRFD +H + +T  E+K +ED VN+ I  ++PV T +M+ +
Sbjct: 585 KMVLGDHVEQAGSLVEPGRLRFDFSHDQAMTKEEIKKVEDIVNEQIQLDIPVCTDVMSVD 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY ++VRVVS+     G  S  LCGGTHV+STG I    I+SE+ + 
Sbjct: 645 EAKETGAMALFGEKYGEKVRVVSM-----GDFSKELCGGTHVASTGAIKTFKIISEAGVA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG RRIEA+T   A  +    +++L   A   K     V  R+E++  E ++L   + K 
Sbjct: 700 AGTRRIEALTSVGALDYYRNVEQELMDAAKAAKTDIYGVASRIEQLLAEVKELTNENKKL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++  E       S      +  ++  I + D   L+++ D  + K+   +++L    K
Sbjct: 760 KDKMAKEAAGDVLSSAIDKDGIKILTAAIPDTDMNSLRNLGDDFKSKLGDSVVVLASA-K 818

Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++ + T+  +    +A ++ +  A ++GGGG GGRP+MAQ+GG N +  + A+A 
Sbjct: 819 DGKVNLIAMATDGAVAKGAHAGNIIKAVAGLVGGGG-GGRPNMAQAGGKNPDGIEAALAQ 877

Query: 892 V 892
            
Sbjct: 878 A 878


>gi|290961838|ref|YP_003493020.1| alanine tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260651364|emb|CBG74486.1| alanine tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 890

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/924 (36%), Positives = 510/924 (55%), Gaps = 64/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVNAGMVPFKPYFLGEVKPSFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQHAWELLTSPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY +D+EA ++W +  G+  ++I R+   DN+WSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYKDDDEAERIWHEQIGVPKERIQRLGKKDNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+     +         P  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTSKEDFEILGELPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I  + ++TG++Y   +   V+ RV+ DH+R++  LI D
Sbjct: 235 ERLAMILQGVQNLYEIDTSMAVIDKATEITGVRYGDAHASDVSLRVVTDHIRTAVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLIDVVIGMMGQQYPELVTDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +LD  ++   +   ++L+GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKQAGGQVLSGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T+FIGY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRDRAKADARAKKTGHADLGAYREIADAAGETEFIGYSDTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTVVGILVDGLSSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG   +  G  ++I D QK   G++VH  +V+ G +        +ID + R  ++
Sbjct: 511 GQIGDTGRIRVDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAQASIDGRRRTAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   I++ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVHAEILSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTSQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    K + +  ++       S   ++ V  ++  +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVSGVAVVTGQVPDGTTADDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           +IQ G   ++ L       K   +I   E   +R   A DL R +AK LGGGG GG+P +
Sbjct: 806 RIQGGRAAVVALFTAVN-GKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDV 863

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ GG N     +A+  V   + +
Sbjct: 864 AQGGGQNPAAIGEAVDAVERLVAE 887


>gi|168186831|ref|ZP_02621466.1| alanyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169295233|gb|EDS77366.1| alanyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 879

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/908 (37%), Positives = 517/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +L+FF+  GH  LPS S++P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEM+GNFSFG YFK   I  AW+  T+   L 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHATFFEMMGNFSFGDYFKNEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179
           + +LY+T+Y +D+EA+ +W   + +    I R+   DNFW     GPCGPCSEI F  D 
Sbjct: 120 KDKLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDN 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE           + +R +E WNLVF QF++        L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEIKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++     +   +Y  +    V+ R+I DH+RS S +I+D +LP+NEGR
Sbjct: 239 VETIFEVDTIKSILDKVATLANTEYGKDEIKDVSLRIITDHVRSVSVMISDEVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG     +  ++ ++    G AYPEL + K  I++ +  E+ER
Sbjct: 299 GYVLRRLLRRAARHGKLLGIKGTFLYKIVDSVIENSGEAYPELKEKKEYIKKVISIEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   + +L     ++L+G+  FKLYDT+G PL++ ++IL  +G+  +D+
Sbjct: 359 FAETIDSGMEILKQYIENLEENNQKVLSGEKVFKLYDTYGFPLELTEEILEEKGII-VDM 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RARA         T+            T F GY+ L            
Sbjct: 418 DGFNKEMKEQRERARAARSESTYMGTDVKILDTIPSEIETVFDGYENLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       + S VK I++  + V+    G+K  +V ++TPFYAE GGQ+GD G   
Sbjct: 467 ------------LQSKVKIIIKDDDFVDCIKKGEKGIIVTERTPFYAEMGGQIGDRGTIS 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG   ++ D +    G  VH   V  G ++ E  ++L +D + R  +  NHSATHLLH 
Sbjct: 515 ADGFIAKVQDCKNNIGGKIVHFVEVIEGNIKLEDEVLLEVDRRRRENVGKNHSATHLLHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  D LRFD TH + +T  ELK +ED VN+ I     VVT+ M+
Sbjct: 575 ALRKVIGEHVHQSGSYVDEDKLRFDFTHFESLTDEELKEVEDLVNNTIENVYDVVTKEMS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  SGA AL   KY DRVRVV +     G  S+ LCGGTH+S+ G+I L  IVSES 
Sbjct: 635 IEEARNSGAMALFDEKYGDRVRVVKM-----GEFSTELCGGTHISNVGKIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG RRIEA+TG +A   +  + + L+ +++ LK S+ +++ R+ +   E +      +
Sbjct: 690 IAAGTRRIEAVTGHKALEFIEHKSDLLRQISNMLKCSEKDIINRLNQQSAELKDKDKEIS 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +L          +  +I  VN     + +VD + L+++ D ++ KI+SG+++L G 
Sbjct: 750 VLKSKLASGSEDDILKNVKEIKGVNLAVAALKDVDGEALRNLGDKIKNKIESGVVVL-GS 808

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   + + ++D + R  +  ++ R  AK+ GGGG GGRP MAQ+GG    K + AI
Sbjct: 809 EVEGKVQFIAMASKDAVSRGVHCGNIVREIAKIAGGGG-GGRPDMAQAGGRLPEKLNDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 NEVENIME 875


>gi|186681072|ref|YP_001864268.1| alanyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|205830164|sp|B2J876|SYA_NOSP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|186463524|gb|ACC79325.1| alanyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 880

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/906 (36%), Positives = 503/906 (55%), Gaps = 49/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR TFL FF +  H++LPS+SL+P  DPT++ T +GM+PFK IF GQ  P ++  T
Sbjct: 9   SGNEIRNTFLNFFAQRSHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRTPEFKRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F    
Sbjct: 68  TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFGFSP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+++D+EAF +W+   G+   +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 124 QNLVVSVFEDDDEAFAIWRDQIGVPVARIKRLGEDDNFWVSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 -RGDENIDLEDDSRFIEFYNLVFMQYNRDVLGNLTPLQNKNIDTGMGLERMAQILQKVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ + Q+ G+ Y  ++     + +VI DH+RS   +IAD I  +N GRGY
Sbjct: 243 NYETDLIFPIIQTAAQIAGIDYHSSDEKTKVSLKVIGDHVRSVVHMIADEIRASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G +      +  +      SAYP + Q +  I+  L+ E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGISGEFTTQVAESAIALSESAYPNVRQREAAIKAELQREESNFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TLDRG  LL+ ++  + +     ++G+ AF LYDT+G PL++ Q++     L  +D   
Sbjct: 363 RTLDRGEKLLEEIIQEVKQQGSTQISGESAFTLYDTYGFPLELTQEVAEENNLT-VDAEG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +E Q+ R R     +   T +     L E    T+F+GY                 
Sbjct: 422 FEAQMEIQKGRGRDAHETIDL-TVQGSLDKLAEHIQVTEFLGYTQ--------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                   +  ++I++AI+ +G   EEA +G +V++V D+TPFYAE+GGQ+GD G   G 
Sbjct: 466 --------SAATAIIEAILLEGVSQEEAEAGTQVQIVLDKTPFYAESGGQIGDRGYISG- 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +   +  KK    FVH   +ERG LR    +   ID   RR+   NH+ATHLL  AL
Sbjct: 517 DGIVVRVEDVKKESDFFVHFGRIERGTLRVGDRVTAQIDPACRRRAQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   +SQ GS ++ D LRFD    + +T+ E++ +E+ VN  IA+       ++   
Sbjct: 577 KKIVDDGISQAGSLVSFDRLRFDFNCPRALTAEEVQQVEEQVNSWIAEAHAAKVEVLPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY D VRV+          S  LCGGTHVS+T EI +  I+SE+ + 
Sbjct: 637 EAKAKGAVAMFGEKYGDEVRVIDFPN-----VSMELCGGTHVSNTAEIGVFKIISEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  Q      
Sbjct: 692 SGVRRIEAVSGPAILDYLNLRDKVVKDLSDRFKVKPEELPDRITSLQSELRNSQKELETL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K+QL +            + D   +   +  VD + LK+  + L +KI +G ++L  + +
Sbjct: 752 KVQLAIAKSDSLLQTAETVGDHKIIVAQLENVDPESLKTAAERLLQKIGNGAVVLGSVPE 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   + ++  +   A       AK+ GGGG GGRP++AQ+GG + +K   A+  
Sbjct: 812 ADKVSIVAAFSPEVNKKGLQAGKFVGAIAKICGGGG-GGRPNLAQAGGRDASKLPDALGQ 870

Query: 892 VASFLK 897
             S LK
Sbjct: 871 AESDLK 876


>gi|282866222|ref|ZP_06275269.1| alanyl-tRNA synthetase [Streptomyces sp. ACTE]
 gi|282559006|gb|EFB64561.1| alanyl-tRNA synthetase [Streptomyces sp. ACTE]
          Length = 889

 Score =  787 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/923 (36%), Positives = 504/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP    V
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+ LT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQFAWEALTNSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL+ITVY +D+EA ++W++  G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GFGLDPERLWITVYLDDDEAEQIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +   P        +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKDDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG++Y   +   V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGAEHGSDVSLRVVADHIRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T  ++  L+  +   MG  YPEL+  +  +E
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGQVVKDLVDVVIDTMGQQYPELVTDRKRVE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +LD  +S       ++L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVSETKATGGKVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T+F GY   +G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADNSGLTEFTGYTSTQG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  +Q+ DVQ+   G+ VH   V+ G +    S++  ID   RR ++
Sbjct: 511 GQLADQGRIRLDTGAVIQVRDVQQPVPGVSVHKGSVQVGEVTVGSSVLAAIDTTRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ +DA   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   LK     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELLKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQK 818
            + +  +    K + +  ++  +       DV  ++     +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLVESAKDVRGVALVTGQVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++Q G   ++ L   +  +  +V+            A DL R +AK LGGGG GG+P +A
Sbjct: 806 RVQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N +    A+A V   + +
Sbjct: 865 QGGGQNPDAIGDAVAAVERLVTE 887


>gi|296185456|ref|ZP_06853866.1| alanine--tRNA ligase [Clostridium carboxidivorans P7]
 gi|296050290|gb|EFG89714.1| alanine--tRNA ligase [Clostridium carboxidivorans P7]
          Length = 879

 Score =  787 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/912 (36%), Positives = 512/912 (56%), Gaps = 50/912 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    ++ +R  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  
Sbjct: 1   MKKIGLNELREMYLKFFESKEHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             VTT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFKE AI  AW+  T+  
Sbjct: 61  TRVTTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEAIPWAWEFTTEVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L + +LY+T+Y +D+EA  LW K + +   +I R+  +DNFW     GPCGPCSEI FD
Sbjct: 117 KLPKDKLYVTIYLDDDEAHDLWVKKTDIDPSRIFRLGKDDNFWEHG-IGPCGPCSEIHFD 175

Query: 179 QGECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +G            + + +R +E WNLVF QF++        L   +IDTGMGLER+AT+
Sbjct: 176 RGNEKINTVEEFLKAADEDRVVEFWNLVFTQFDKDEDGNYNKLKNPNIDTGMGLERIATI 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   + +++D  + ++    +V  ++Y  +    ++ RVI DH+RS SF+I+DGILP+N
Sbjct: 236 MQGTNSIFEVDTIRAILDEVSKVAKIEYGKDEKSDISMRVITDHVRSVSFMISDGILPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + + LG     +  L   +       Y EL + +  I++ ++ E
Sbjct: 296 EGRGYVLRRLLRRAAKHGKSLGINNAFLYKLTDMVIDNSCGNYAELAEKRDYIKKVIKLE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T+D G+ +L+  + +L    + IL+G+ AFKLYDT+G P+++ ++IL  + +  
Sbjct: 356 EERFDETIDSGMQILNEFIENLKINNETILSGEKAFKLYDTYGFPIELTEEILEEKDMK- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  FN+ ++ QR RARA          E    +       T+F GYD L         
Sbjct: 415 VDLEGFNKEMQNQRERARAAREETNYMGAEDTILNKIPLEIETKFNGYDTL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S VK +++  E V   V G K  +V + TPFYAE GGQ+GD G
Sbjct: 466 --------------HTTSKVKILIKNEEFVSTMVEGDKGVIVTENTPFYAEMGGQIGDHG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D  + ++ D +K   G  +H   V  G +  +  + L ++   R  +  NH+ATHL
Sbjct: 512 IISTDSFKAEVVDCKKNVAGKILHFVKVLSGTIGVDHQVTLNVNEARRNNIRRNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L+ AL  +LG HV Q+GS +  + LRFD  H +  +  ELK +E  VND I + L V T+
Sbjct: 572 LNEALRKVLGEHVHQSGSYVDDERLRFDFNHFEAPSHEELKKVEALVNDEIVKVLNVQTQ 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E+A  +GA AL   KY D VRVVSV     G  S  LCGGTHVS++GEI L  I+S
Sbjct: 632 SMSLEEAKETGAIALFDNKYKDEVRVVSV-----GDFSKELCGGTHVSNSGEIGLFKIIS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AGIRRIEA+TG +A +++  +++ +K + + L+ S+  ++ +++    E ++   
Sbjct: 687 EAGVAAGIRRIEAVTGPKAIAYVEAKNDLIKEIGNKLRCSEKEIIHKLDLQALELKEKDK 746

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A+ K +L             ++  +   + ++ +VD   L+ + D ++ K    +++L
Sbjct: 747 EIAELKSKLAGSAEDEILNGFQEVKGIKLFTGVLKDVDGNALRDLADKIRNKGGECVVVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  E K   + + T++ + +  +   + +  A + GGGG GGRP MAQ+GG    K +
Sbjct: 807 GSVV-EGKVQFVSMTTKEAIAKGVHCGKIIKEVAAIAGGGG-GGRPDMAQAGGKLPEKVE 864

Query: 887 QAIAGVASFLKK 898
            AI    S L+K
Sbjct: 865 DAIGSCVSILEK 876


>gi|23099464|ref|NP_692930.1| alanyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
 gi|33301696|sp|Q8EPS9|SYA_OCEIH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|22777693|dbj|BAC13965.1| alanyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
          Length = 879

 Score =  787 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/914 (36%), Positives = 515/914 (56%), Gaps = 58/914 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  F++FF++  H + PS+SL+P  DPTL++ NSG+   K  F G+  P  
Sbjct: 1   MKSLTSAEIRQMFIDFFKEKSHSVEPSASLVPHEDPTLLWINSGVATLKKYFDGRVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ A++ AW+ LT  K
Sbjct: 61  PRIVNAQKSIRT----NDIENVGYTARHHTFFEMLGNFSIGDYFKKEAMEWAWEFLTDEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
             + D+  L +TV+ ED+EA+ +W    G+  ++IIRI   +NFW + E GP GP +EIF
Sbjct: 117 WINFDEALLSVTVHPEDDEAYDIWLNDIGIPKERIIRI--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E  RY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDPQDPELYPGGENNRYLEVWNLVFSQFNHNPDDTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           + +++Q+   N++ DLF  +I+ +E+++  KY  +     + +VI DH+R+ SF I DG 
Sbjct: 234 LTSIIQQVPTNFETDLFMPIIRETERISKRKYGNSEAEDTSFKVIADHIRTVSFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRR++RRA+ +A+ LG  EP M  L+P +   M   YPE+ +    I   
Sbjct: 294 MPSNEGRGYVLRRLIRRAIRFAKDLGVNEPFMYQLVPVVGDIMKDFYPEVQKDAGYISNV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++ E+ERF +TL+ GL++L  ++        E+  G+  F+LYDT+G P ++ ++ +  +
Sbjct: 354 IKVEEERFHETLNDGLIILASIIEEERKKGSEVFPGEEVFRLYDTYGFPKELTEEYVEQQ 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   ++   +++ + +QR RAR     + S   +   F+  E    + F+GYD L+    
Sbjct: 414 GFT-VNQAGYDKEMNKQRERARNARQKVDSMQVQDTIFT--EINVDSTFVGYDQLQK--- 467

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + ++A+V+    +EEA  G  + V   +TPFYAE+GGQ+
Sbjct: 468 --------------------ETTIEALVKDKNQIEEANQGDVLYVFLKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     ++DVQK   G  +H   ++ G  +    +   ++   R  +  NH+
Sbjct: 508 ADNGWIYSENASAYVSDVQKSPNGDHIHQIEIKEGSFKINQPVHAVVERTFRNHVIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSHV+Q GS + P+ LRFD +H   +T+ EL+ IE  VN+ I ++LP
Sbjct: 568 ATHLLHQALKDVLGSHVNQAGSLVRPERLRFDFSHFHGVTAEELQQIELKVNEKIWESLP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       ++A A GA AL G KY D VRVV +     G +S  LCGG HV +T EI L 
Sbjct: 628 VAIDSKKIDEAKAMGAMALFGEKYGDIVRVVQI-----GDYSIELCGGCHVINTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IV E+ I AG RRIEA+T ++A  +L  + + L + A  LK S+  +  R+E +  E +
Sbjct: 683 KIVQETGIGAGTRRIEAVTSKQAYDYLNTKLDLLHNSAQKLKTSEEQLPERIEGLQVELK 742

Query: 769 KLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             Q        +L+  + S       +I+ V  ++  ++  D  +L+S+MD L++K+ SG
Sbjct: 743 DSQKQVDSLSAKLSNLEASSILDEVKEISGVPVLAQEVNVKDMNQLRSMMDELKQKLSSG 802

Query: 824 IIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L       K  ++  VT+D L    +A ++ + +A V GGGG GGRP MAQ+GG + 
Sbjct: 803 VILLAA-ENNGKVQLVAGVTKDMLEKNMHAGNIVKQAATVCGGGG-GGRPDMAQAGGKDP 860

Query: 883 NKADQAIAGVASFL 896
           +K  +A+  V  ++
Sbjct: 861 SKIKEALQSVEQYI 874


>gi|57506111|ref|ZP_00372033.1| alanyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
 gi|57015595|gb|EAL52387.1| alanyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
          Length = 844

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/896 (39%), Positives = 515/896 (57%), Gaps = 58/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  FL FF   GHE+ PSS L+P +D +L+FTN+GMVPFKNIFTG+         T+ 
Sbjct: 2   DIRAQFLNFFASKGHEITPSSPLVP-DDASLLFTNAGMVPFKNIFTGEVPRPTPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+  I  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEVIAYAWEFVTEVLKLPKER 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV+++D+EA+ LW+  + +  ++I R    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHEKDDEAYTLWQ--AHIEKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  + + K +N
Sbjct: 179 HSSEDYMGGDGDRFLEIWNLVFMQYERSSNGTLSPLPKPSIDTGMGLERVYAIKEGKLSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  LI     + G  Y   +  ++RVI DH+RSS+FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPLINQIASLCGRAYVYESGASYRVIADHIRSSAFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  LC  MG  Y  L + K  I+E ++ E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGLKEPFMYKLVDVLCELMGGHYAYLNEKKEAIKEQIKLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +G+ L +  L+      I +G++AFKLYDT+G PLD+ QD+L  +GL+ ID   F + + 
Sbjct: 359 KGIELFNEELAKT--QNIFSGEIAFKLYDTYGFPLDLTQDMLREKGLS-IDEECFERLMS 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ+ RA+A   G G       +  L E++G  +F+GY                       
Sbjct: 416 EQKERAKAAWKGSGDKVVSGDFKILLERFGKNEFVGYTQ--------------------- 454

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  ++ E+  +GQ   V  D+TPFYA +GGQ+GD G    + I   
Sbjct: 455 --KACESQILALLDENFKMQEKLHNGQTGWVFLDKTPFYANSGGQVGDKGFLGENEISDT 512

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
               +     I   +       L+ +  L+  ID   R Q++ +HSATHLLH+AL  ILG
Sbjct: 513 QKFFELNLSKITAKN------ELKLDEKLLAHIDEDKREQIARHHSATHLLHYALRKILG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           +H++Q GS +  + LRFD  H K +T  EL+ IE+ VN++I+ + P +   M+ +DA  S
Sbjct: 567 THIAQAGSLVEFNKLRFDFNHPKALTKEELEKIENLVNEMISSSYPALLEEMSLDDAKKS 626

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY  +VRV+S+        S  LCGGTHV+++ EI   +I+ ES + AG+RR
Sbjct: 627 GAIALFSEKYESKVRVLSLGE------SKELCGGTHVNNSAEIGSFFILKESGVSAGVRR 680

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A ++     ++L+SL   LK +  +++  + ++  E  KL+          N
Sbjct: 681 IEAVVSKAAHTYAKNALKELESLKIELKNN--DLLSGISKLKNEISKLKNELKN----SN 734

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             +L    +  V      +   D   +K+++D  + + +  +I+L+   KE K S+   V
Sbjct: 735 QNELKSENVKGVQICIAKVENGD---IKAMIDHFKNQFEKAVILLI-QEKEGKISLAAGV 790

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                    A +L +  A +L GG GGG+   A +GG +  K D+A+    SF++K
Sbjct: 791 KNAP---LKAGNLVKNIAMIL-GGNGGGKDDFATAGGKDLTKIDEALKEAKSFIEK 842


>gi|329938948|ref|ZP_08288322.1| alanyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329301833|gb|EGG45726.1| alanyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 890

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/923 (36%), Positives = 509/923 (55%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE A +LAW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAAKLAWELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY+ED+EA ++W+ I G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEAEKLWITVYEEDDEAERIWRDIVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+         +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKEDFEILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I  + ++TG+ Y   +    + RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNLYEIDTSMAVIGKATELTGVAYGDAHDSDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVETVIATMGQQYPELVTDRERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+ RF KTL+ G  +LD  +  +      +L GD AF L+DT G P+D+  ++  
Sbjct: 355 KVALAEEARFLKTLNAGTNVLDTAVTETKAAGSTVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +L   +G  +   +  + +  GAT FIGY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADALAKKTGHADLGAYREIADSAGATDFIGYTETEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTVVGILVDGLSSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG      G  ++I D QK   G++VH  +V+ G +        +ID + R+ ++
Sbjct: 511 GQIGDTGRIRTDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGARAQASIDDRRRKAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A S L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYSFLAREHTVVHQLTELVKGRPEELPEKVAGML 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMS----HIISEVDSKELKSVMDALQK 818
              +  +    K + +  ++          DV  ++     +     + +L+ ++  ++ 
Sbjct: 746 ARLKDAEKEIEKFRAEKVLQAAGGLAASAKDVRGLALVTGQVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   ++ L  ++  +  +V+            A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIQGGRAAVVALFAVNNGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N     +A+  V   + +
Sbjct: 865 QGGGQNPAAVGEAVDAVERLVAE 887


>gi|253681881|ref|ZP_04862678.1| alanine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253561593|gb|EES91045.1| alanine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 879

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/908 (36%), Positives = 505/908 (55%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +L+FF+  GH  LPS S++P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+  T+   + 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHATFFEMLGNFSFGDYFKNEVIPWAWEFTTEVLKMP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179
           + +LY+T+Y +D+EA+ +W   + +    I R+   DNFW     GPCGPCSEI F  D 
Sbjct: 120 KDKLYVTIYLDDDEAYDIWTTKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDN 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE           + +R +E WNLVF QF++        L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEIKSVEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  + ++     +    Y  +    ++ R+I DH+RS S +I+D +LP+NEGR
Sbjct: 239 VETIFEVDTIRSILDKVANLANTTYGEDSVKDMSLRIITDHVRSVSVMISDEVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  ++ ++    G AYPEL + K  I++ +  E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGIQGTFLHKIVNSVIENSGDAYPELKEKKDYIKKVISIEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +  L      +L+G+  FKLYDT+G PL++ ++IL  + +  +D+
Sbjct: 359 FAETIDSGMEILKEYIEELEKENKNVLSGEKVFKLYDTYGFPLELTEEILEEKNIT-VDM 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++ QR RARA         T+            T+F GY  L            
Sbjct: 418 DGFNEEMKVQRERARAARSESTYMGTDVKVIDTIPSEIETKFDGYKNLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       + S +K I++  +  +   +G+K  +V D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------LQSKIKVIIKNDDFADCIKAGEKGIIVTDKTPFYAEMGGQIGDKGTIS 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG   ++ + +    G  +H   V  G ++    ++L +D   R  +S NHS THLLH 
Sbjct: 515 ADGFVAKVENCKNNIGGKIIHFVEVIEGNIKLGDEVLLEVDRVRRDNVSKNHSTTHLLHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q+GS +  D LRFD TH + +T  EL  +ED VN+II++   V T  M 
Sbjct: 575 ALREVLGDHVHQSGSYVDEDKLRFDFTHFEGVTQEELTKVEDLVNNIISKVYEVETNEMT 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  SGA AL   KY D+VRVV +     G  S  LCGGTH+S+ G+I L  IVSES 
Sbjct: 635 IEEARQSGAMALFDEKYGDKVRVVKI-----GNFSVELCGGTHISNIGKIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AGIRRIEA+TG +A   +  +   LK +A  LK S+ +++ R+ +   E ++ +   A
Sbjct: 690 IAAGIRRIEAVTGTKALEFIKDKSNLLKEVAELLKCSEKDILNRLNQQSLELKEKEKEIA 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +L          +  +I  V      + +VD + L+++ D ++ K+ SG+++L G 
Sbjct: 750 SLKSKLASGSEDEILNNVKEIKGVKLAVANLKDVDGEALRNLGDKIKNKLGSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   + + ++D++    +   + R  AK+ GGGG GGRP MAQ+GG    K   A+
Sbjct: 809 EVEGKVQFIAMASKDVVSKGVHCGTIVREIAKIAGGGG-GGRPDMAQAGGRLPEKLKDAM 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 NAVENIME 875


>gi|227505016|ref|ZP_03935065.1| alanyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198380|gb|EEI78428.1| alanyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 895

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/929 (35%), Positives = 492/929 (52%), Gaps = 67/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F + F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MKTHEIRERFTQHFVKTGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT    
Sbjct: 60  LATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWSLLTGSVE 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY +D+EA  +W +  G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 DGGFGLDPERLWVTVYLDDDEAADIWHEQVGVPRERIQRLGMEDNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGM 228
           I++D+G    G   G   +  RY+EIWNLVFMQ E+         +    LPK +IDTG+
Sbjct: 176 IYYDRGPEY-GAEGGPVADDNRYMEIWNLVFMQNERGEGIGKGNFEILGPLPKKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSF 284
           G+ER+A +LQ   N Y+ DL + +I A+E++TG KY       + +  RVI DH R+   
Sbjct: 235 GIERVACILQGVDNVYETDLLRPVIDAAEELTGAKYGEGASDQDNIRFRVIADHSRTGMM 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NEGRGY+LRR++RR +  ARLLG T P M   +  +   M  +YPE+   +
Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSARLLGATAPSMERFMNTIMDTMTPSYPEIADNR 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG------KDEILNGDVAFKLYDTHGLPL 398
             I     +E++ F KTL+ G  L D  +  L         +IL+G+ AF+L+DT+G P+
Sbjct: 355 ERILRVAIAEEKAFLKTLESGTKLFDEAVEALKSTSRAATPKILSGEKAFELHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++    GL  +D+  FN+A+ EQR RA+A +     G  +   +        T F 
Sbjct: 415 DLTLEMAQEAGLE-VDMDGFNEAMGEQRRRAKADNQAKKHGHADLSLYREWVDNNPTVFT 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY+ L                          + +  +V+ G+ V E   G++VEV+ DQ+
Sbjct: 474 GYETLTSD-----------------------AKIIGLVRDGQKVNEVHEGEQVEVILDQS 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           P YAE+GGQ  D G        L++ DVQK  + ++VH A V  G L    ++   +D +
Sbjct: 511 PLYAESGGQTADRGRIYAGESLLEVGDVQKIGKKLWVHKATVTAGGLDLGSTVTAEVDQK 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++ A+L+ I   
Sbjct: 571 WRHGAVQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSPAQLEEIALI 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  +  +  V T   + E A   GA AL G  Y  +VRVV +    GG  S  LCGGTH
Sbjct: 631 TNQAVDAHFAVNTIETSLEQAKQMGAMALFGENYGSQVRVVEM----GGPFSIELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V++T EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LK+   ++  
Sbjct: 687 VANTSEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGISRELKIQSEDLPE 746

Query: 759 RVEEIWEEYRKLQLIHAKR-KLQLNVEDLS----CHKIADVNFMSHIIS-EVDSKELKSV 812
           R+ ++ E+ +  +    +  K QL  +          +     +S  +   V   +L+++
Sbjct: 747 RIAQLTEKLKAAEKQIDELHKAQLMAQTADMIGGAITVNGFAVVSVRLPNNVSGGDLRTL 806

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
              ++ ++    G+++L   ++  K   ++  T+  + R   A DL +  +  +  G GG
Sbjct: 807 ATDIKNRLGDEAGVVVLASENEGGKTPFIVGATKAAVARGIKAGDLVKTISGYV-DGKGG 865

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G+P MAQ  G N      A   +   L+K
Sbjct: 866 GKPDMAQGSGANAEGLQAAFNALRDELEK 894


>gi|304440318|ref|ZP_07400207.1| alanine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371070|gb|EFM24687.1| alanine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 874

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/911 (37%), Positives = 501/911 (54%), Gaps = 50/911 (5%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+    IR  FLEFF+   H +L S  LIP  D +L+   +GM P K  FTG+  P  
Sbjct: 1   MKNLGLHEIRKEFLEFFKSKDHLILKSFPLIPKQDKSLLLIGAGMAPMKKYFTGELTPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V+T QKC+R G    D++NVG T+RH TFFEMLGNFSFG YFK  AI  AW+ LT+  
Sbjct: 61  KRVSTCQKCIRTG----DIENVGLTDRHATFFEMLGNFSFGDYFKHEAISWAWEFLTEHL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L + +L++TV+ EDEEA+K+W+    +  ++I+++   DNFW + E GP GPCSEI+ D
Sbjct: 117 ELPKDKLWVTVFYEDEEAYKIWRDEIHIPEERIVKMGKEDNFWEL-EVGPSGPCSEIYVD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      E +R+IE+WNLVF QF++        L   +IDTGMGLER+ATV
Sbjct: 176 RGEEYGCGDPDCKPGCECDRFIEVWNLVFTQFDKDEAGVYHPLAHPNIDTGMGLERIATV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N ++ID  K++I+  E+++  KY+ +N   ++ RVI DH R+ +F+I+D + P+N
Sbjct: 236 LQNTNNIFEIDAIKNIIEKIEELSNYKYKTDNKKDISVRVITDHARAMTFMISDTVRPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG     +  +   +       Y +L + +  I+E +R E
Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIKRAFLSEIADLIIDSWSVEYDDLKENREKIKEVIRIE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F +T+D+G+ +L+  L  L K+   +L GD AFKLYDT+G P+D+  +IL   G   
Sbjct: 356 EEKFLETIDQGMNILNSYLEELDKENTKVLPGDKAFKLYDTYGFPIDLTIEILEDSGYE- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F++ +EEQR RAR        G T K      E    T+F GY            
Sbjct: 415 VDRKGFDENMEEQRRRARESRDHDQIGWTSKESEHYYEDLN-TEFTGYSDDESD------ 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  IV  GE+V+ A  GQ+   V D+TPFY E GGQ+GD G
Sbjct: 468 -----------------SKIVRIVLNGEVVDSACEGQRAIFVLDKTPFYGEGGGQVGDIG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   + I D +K ++GI +    V  GI +    +   ID + R  +  NHS THL
Sbjct: 511 TVTSDNFEIDIIDTKKTSKGIVLMIGDVTAGIAKVGSDVHTEIDVERRNNIRRNHSVTHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +  D +RFD TH + I+  +LK IE+ VN  I + LPV T 
Sbjct: 571 LHKALKEVLGNHVNQAGSLVRDDYMRFDFTHFEAISQEDLKKIEEIVNKEIFRALPVETI 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           I N ++A   GA  L   KY D VRVV +     G  S  LCGGTHV +T EI +  I+ 
Sbjct: 631 ITNPKEAAELGAVGLFEEKYGDIVRVVKM-----GDFSIELCGGTHVKNTSEIGMFKILQ 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I +G+RR+E ITG     +L    E++  ++  +K ++  +  ++E    E ++ Q 
Sbjct: 686 EGGISSGVRRVECITGPAVYKYLNENIEQIDRISKLVKANKSEIEHKIETTQNELKEAQK 745

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K      ++        +I     + +    +D   L+ + D ++ K+ S +++ 
Sbjct: 746 EIEIIKKDKAKSEVDNVLDTKFEIDGGFGLVYKFENMDVSTLRDLADTVKDKLGSAVVV- 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                E K + +   + ++  ++NA  + R  AK+  GG GGGRP MA +G  +  K D+
Sbjct: 805 FSTVNEGKLNFVAAASNEISKKYNAGSIVREVAKIC-GGSGGGRPTMATAGASDLTKVDE 863

Query: 888 AIAGVASFLKK 898
           A+      L +
Sbjct: 864 ALNFAKKLLTE 874


>gi|310829304|ref|YP_003961661.1| alanyl-tRNA synthetase [Eubacterium limosum KIST612]
 gi|308741038|gb|ADO38698.1| alanyl-tRNA synthetase [Eubacterium limosum KIST612]
          Length = 879

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/906 (36%), Positives = 511/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  L S  L+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 6   LNEIREKFLAFFESKGHLRLKSFPLVPINDKSLLLINSGMAPMKPYFTGDEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK+ AI  AW+  T+  ++D  
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFCTEVMEMDPE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           ++Y+++Y +DEEA  +W    G+  ++I+R+   DNFW     GPCGPCSE+++D+GE  
Sbjct: 122 KIYVSIYLDDEEAHDIWHDEIGVPEERIVRLGKEDNFWEHG-LGPCGPCSELYYDRGEEY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+E WNLVF QF++  +     L   +IDTGMGLER+AT++Q   
Sbjct: 181 GCGSPDCAPGCECDRYVEFWNLVFTQFDKDEEGNYNPLANPNIDTGMGLERLATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N ++ID   H++    +  G+KY     + V+ RVI DH+RS +F+IADG++P NEGRGY
Sbjct: 241 NIFEIDTIGHILNYICKKAGVKYGENAQDDVSIRVITDHVRSVTFMIADGVMPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  E  +  +   +      AYPEL + +  I++ +R E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGMQELFLYDVAKEVVRVSADAYPELAEKQDYIQKLIRIEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL LL+  L  L   ++++  G  AFKLYDT+G P D+ ++I+  RGL  +    
Sbjct: 361 ETIDQGLSLLEKELDSLIEQEEKVFPGQGAFKLYDTYGFPYDLTKEIVEERGLT-LIASE 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A++EQR RAR               F+        +F+GY+ L              
Sbjct: 420 FEEAMQEQRERARKARAESELAVWADDPFNPLGPDALVEFVGYENLE------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +  +  ++   E+V E  +G+ V V+ D+T FYAE+GGQ+GD G  +  
Sbjct: 467 ----------ANGKIIGLISGEELVSEVHAGEDVLVLLDKTSFYAESGGQVGDKGQIVSG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +++TD +K +    +H+  V  G  +    +   ++ + R     NH++THLL  AL
Sbjct: 517 DRVIEVTDCKKGSLSRHIHYGKVVSGTFKMGEEVTTKVNRELRAATQRNHTSTHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS ++PD LRFD  H +P+T  E + +E+ VN  I + + V     + +
Sbjct: 577 KQVLGDHVEQAGSFVSPDRLRFDFNHFQPMTHEEKRQVEEIVNKAILEAMDVAIFETSID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA + GA AL G KY + VRVV V     G  S  LCGG H++++ ++ +  I+SE+ + 
Sbjct: 637 DARSMGAMALFGEKYGEVVRVVKV-----GDFSIELCGGCHITNSAQVGMFKILSETGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA TG  A  H+   D+ L   A  LK +  +++ +V E+ E+ +  + +  + 
Sbjct: 692 AGIRRIEAATGMNAVHHVEQMDDTLLETAEALKTNPDHLLEKVTELAEQSKHKEKVINEL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +     +         I  V      +  VD +EL+++ D L+ ++ SGI++L G   
Sbjct: 752 KHKFAGNMVMDIHQKVTVIDGVQTTIAEVEGVDMEELRNISDMLKDRMGSGIVLL-GTRG 810

Query: 833 EKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           ++K + +   T+D L   F+A  L +  A++ GGGG GGRP MAQ+GG    K  +A+  
Sbjct: 811 KEKVNFIATATKDILNKGFHAGKLIKEVAQIAGGGG-GGRPDMAQAGGKKPEKLGEALEK 869

Query: 892 VASFLK 897
               +K
Sbjct: 870 AKEIIK 875


>gi|195953907|ref|YP_002122197.1| alanyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933519|gb|ACG58219.1| alanyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 856

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/903 (35%), Positives = 503/903 (55%), Gaps = 53/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL FF+  GH ++ SSS++P +DPTL+F N+GMVPFKN+F G E   Y+  
Sbjct: 1   MKTDEIREKFLSFFENKGHTVVKSSSIVPKSDPTLLFVNAGMVPFKNVFLGLESLPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKC R  GKHNDL++VGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   L 
Sbjct: 61  TSCQKCFRVSGKHNDLESVGRTTRHHTFFEMLGNFSFGDYFKKEAILYAWEFVTEVLRLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++Y++V+  D+EA+ +WK +  +  DKI R+   DNFW M ETGPCG  SEI+ D+GE
Sbjct: 121 KDKIYVSVHQNDQEAYDIWKDMVKVPEDKIWRMGDEDNFWQMGETGPCGYSSEIYIDRGE 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                        ERY+EIWNLVFMQF +        L K SIDTGMGLER+A+V+Q K 
Sbjct: 181 KYSQ--------DERYLEIWNLVFMQFNKDESGHMEPLAKPSIDTGMGLERIASVIQGKD 232

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           +N++ID+   +I   E ++  +Y+ +    +  RVI DH R+ +  I++GI+P+NEGRGY
Sbjct: 233 SNFEIDIIMPIIHFVEDLSSKRYKTDEETDIAMRVIADHSRACTVAISEGIIPSNEGRGY 292

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           V+R+++RRA+ +   +G  E  +   +  +   + +AYPEL  +K  ++  +++E+ RF 
Sbjct: 293 VVRKVLRRAVRFGYKIGIKEEFLYKSIDVVVDTLKNAYPELEMSKEFVKNIIKAEESRFL 352

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+  L L D  ++   K  +++GD  FK YDT+G PLDI+Q++   +G+  +D+  F 
Sbjct: 353 ETLENSLELFDRYIAE-NKSNVISGDFIFKAYDTYGFPLDILQEMTHEKGMT-LDMKGFY 410

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + LE+Q+  +R H         ++++ S+K+K   + F GY                   
Sbjct: 411 ELLEKQKEESRKHFK--SEEKVDEVYLSIKDK-ARSIFTGYTHTE--------------- 452

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I++ G++ EE    +   ++ ++TPFY E GGQ+GD+G       
Sbjct: 453 --------EQAKVLFIIKDGKMTEELKEQEDGIIILNKTPFYPEKGGQIGDSGILENSEA 504

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + D +   +G+  H   V +G LR    ++  ID + R  +  +H++THLLH AL  
Sbjct: 505 LFIVNDTKTPTDGVIAHIGKVIKGRLRVGTDVLAKIDKERREDIKRHHTSTHLLHAALRN 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           + G  V Q GS +  + LRFD T  + +   EL+++E  +N+ I +N  +  + +  ++A
Sbjct: 565 MFGESVRQAGSYVGDEFLRFDFTFYRSLKPEELEALEAMINEEIMKNEEIFVKELPYQEA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I +GA A+   KY D VRV+S      G  S  LCGGTHV  TG+I    ++SESS+ AG
Sbjct: 625 IKTGAIAIFEEKYGDVVRVIS-----AGDFSKELCGGTHVKRTGDIGYFKLISESSVGAG 679

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRI A  G++A        + LK++   +  ++ N++ RV  + EE ++        K 
Sbjct: 680 IRRIIAKAGRKAVREAYEDSKLLKTIYQEIGANKQNLLERVIALKEELKEKDNQIQMLKS 739

Query: 780 QL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +L        L+  +I  +     I+ E     L+ + D+ + +  + ++ LV  S   K
Sbjct: 740 KLVRLEAKASLNIEQINGIKLYWGILEEASLDNLREIADSYR-QHPNTVVFLVSKSP--K 796

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+LI  ++DL     A  + +  AK +  G GGGR  +AQ G       + A+  + S 
Sbjct: 797 KSILIARSKDLNYDMKA--IIKDIAKPME-GSGGGREDLAQGGVQKIETFNSALEVLKSI 853

Query: 896 LKK 898
           L K
Sbjct: 854 LSK 856


>gi|219847052|ref|YP_002461485.1| alanyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
 gi|219541311|gb|ACL23049.1| alanyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
          Length = 894

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/920 (38%), Positives = 510/920 (55%), Gaps = 57/920 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR TF+ FF+++GH  +PSSSL+  +DPTL+F NSGMV FK++F G+E+  Y    
Sbjct: 5   TAAQIRETFISFFKRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYTRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI+LAW LLT+EF L  
Sbjct: 65  TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIRLAWKLLTEEFQLPV 124

Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL+ TV+        D+EA  LW    G    +++R    DNFW M +TGPCGPCSEI 
Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIAQ-GADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G+ +      G + +   Y+EIWN VFMQ+++        LP+ S+DTGMGLERMA 
Sbjct: 184 IYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRA---TMQPLPRPSVDTGMGLERMAM 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V+Q   + YD DLF  +I     V G    +   +   +R I DH R+ +FLIADG+LP 
Sbjct: 241 VMQGVHSTYDTDLFVSIINRIIAVRGSDEEHYQAHRSAYRAIADHSRAIAFLIADGVLPG 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GR YVLRRI+RRA    R +G+  P +  ++  +  +MG  YPEL+  + LI      
Sbjct: 301 NLGRPYVLRRILRRAAYQGRTIGFERPFLAEVITTVIDQMGEVYPELVNRRELILSAADQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ +F +TL  GL  L+ V+  +      ++ G  AF L DT+G PLD+ Q I   +GL 
Sbjct: 361 EERQFLRTLSGGLSRLNAVIEQVRTRGETVIPGTDAFVLKDTYGFPLDLTQKIAAEQGLT 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   +  A+ EQR+R+RA + G   G  + +W  L     A+ F GY+ L        
Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAAGKRGGEAD-LWAEL--DLPASHFTGYERLSDR----- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V  ++  G+ +  A+ G++V++V D TPFYAE+GGQ+GDT
Sbjct: 472 ------------------ATVIGMLADGDAITSAMVGRQVQIVLDTTPFYAESGGQVGDT 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +G    +QI D ++   G+ VH+  V  G +     +  T+D   R  +  NH+ATH
Sbjct: 514 GVLVGPEGSVQIEDTRRPLPGLIVHYGRVVSGTIHVGDQVQATVDMVRRADIQRNHTATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  AL  +LG H +Q GS + PD LRFD TH+KP+   EL+ IE  +N  +  +  V  
Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKPLDPEELREIERRLNAWVRADASVRW 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGE 704
            I     AIA GA AL G KY D VRVV++E        E     S  LCGGTHV+ TGE
Sbjct: 634 EITGYRSAIARGAIALFGEKYGDTVRVVTIERGTGIENGEYASRDSLELCGGTHVNRTGE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I+ E SI +GIRR+EA+TG+ A      Q + L+ LA+ +      ++ R+E + 
Sbjct: 694 IGFVRILGEGSIGSGIRRVEALTGRGAELWAEEQAQTLRDLAARINAQPAQLIERIEALL 753

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            E R+ +      + +L  E L         +A +  ++  +     + L+ + + L+ K
Sbjct: 754 AENRQRRQELEALRSKLAREMLDTLVHRTQTVAGIPLLAAEVEADSVERLREMGEYLRDK 813

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + S +I+L G     K  +L +VT DL+ R  NAV + +  A ++GGGG GGRP +AQ+G
Sbjct: 814 LGSAVIVL-GAQINGKPQLLTIVTSDLVKRGLNAVHIVKPLAAIVGGGG-GGRPEIAQAG 871

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G   ++   AI      L +
Sbjct: 872 GRTPDRLAAAITAAVDVLAE 891


>gi|225026503|ref|ZP_03715695.1| hypothetical protein EUBHAL_00752 [Eubacterium hallii DSM 3353]
 gi|224956191|gb|EEG37400.1| hypothetical protein EUBHAL_00752 [Eubacterium hallii DSM 3353]
          Length = 867

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/901 (36%), Positives = 497/901 (55%), Gaps = 48/901 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT QKC+R
Sbjct: 1   MYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRKRVTTCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++NVG+T+RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  RLY +V
Sbjct: 61  TG----DIENVGKTDRHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVVGLDADRLYPSV 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y ED+EAF +W+   G++ ++I +    DNFW     GPCGPCSEI++D+GE    G PG
Sbjct: 117 YLEDDEAFAIWRDEIGIAPERIFKFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPG 175

Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                + +RY+E+WN VF QFE         L + +IDTGMGLER+A ++Q+  + +D+D
Sbjct: 176 CTVGCDCDRYMEVWNNVFTQFENDGHNNYTTLKQKNIDTGMGLERLAVIVQDVGSIFDVD 235

Query: 248 LFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             + L     +V    Y     + ++ R+I DH+RS++F+I+DGI+P+NEGRGYVLRRI+
Sbjct: 236 TIRSLRDKICEVAKKTYKENEQDDISIRLITDHIRSATFMISDGIMPSNEGRGYVLRRII 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + RLLG     +  L   +       YPEL + K  I   +  E+ +F KT+D+G
Sbjct: 296 RRAARHGRLLGIEGKFLAELSKTVIEGSKDGYPELEEKKDFIYNVIIQEEGKFNKTIDQG 355

Query: 366 LVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L  +   + +  +  L+G  AFKLYDT+G PLD+ ++IL  +G   ++  +F   + 
Sbjct: 356 LAILADLEESMKEKGVKELDGQDAFKLYDTYGFPLDLTKEILEEKGYT-VNEEAFQTCMN 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ+ +AR+          +   +   +    + F+GY+                      
Sbjct: 415 EQKEKARSARKTTNYMGADVTVYESIDPSVTSTFVGYETQE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S +  +    E+ E    GQ   +  D+TPFYA  GGQ  D+G          +
Sbjct: 456 ----CDSKITVMTTDTELTEALTDGQAGTIFVDETPFYATGGGQHADSGVITCKDGEFVV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DV K   G   H   V +G+ +   ++ L+++   R   +  HSATHLL  +L T+LG+
Sbjct: 512 EDVVKMLGGKIGHIGHVTKGMFKVGDTVTLSVNKAQRADTAKGHSATHLLQKSLRTVLGN 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q+GS +  D LRFD +H + +T+ EL  +E  VN+ IA++L V T IM+ ++A  +G
Sbjct: 572 HVEQSGSYVDKDRLRFDFSHFQALTAEELAEVEKMVNEKIAEDLTVSTEIMSVDEAKNTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D+VRVV++     G  S   C GTHV  TG I    I+SE+ + AGIRRI
Sbjct: 632 AMALFGEKYGDKVRVVTM-----GDFSKEFCAGTHVPHTGVIKAFKIISETGVAAGIRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG     + + +++ L   A   K     +  +++ + +E + L   + K K Q+  
Sbjct: 687 EALTGDGVMKYYLDEEKTLHEAAKAAKAEPHKLAEKIQSMLDEIKALSAENEKLKDQIAK 746

Query: 784 EDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            +++       +  D   +   + +VD   L+++ D L+ KI SG+++L       K ++
Sbjct: 747 SEVADVMDQVVEAGDYKVLPVSVKDVDMNALRTLGDDLKGKIGSGVVILAS-DMGGKVNL 805

Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           ++  T+D +    +A  + + +A ++GGGG GGRP+MAQ+GG N      A+       K
Sbjct: 806 IVTATDDAVKAGAHAGKIIKEAAALVGGGG-GGRPNMAQAGGKNPAGIKAALEKAVEIAK 864

Query: 898 K 898
           +
Sbjct: 865 E 865


>gi|163814106|ref|ZP_02205498.1| hypothetical protein COPEUT_00259 [Coprococcus eutactus ATCC 27759]
 gi|158450555|gb|EDP27550.1| hypothetical protein COPEUT_00259 [Coprococcus eutactus ATCC 27759]
          Length = 887

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/901 (37%), Positives = 493/901 (54%), Gaps = 40/901 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEF +  GH  + S SLIP ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFMESKGHLRMKSFSLIPHNDNSLLLINSGMAPLKPYFTGQEVPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD+ 
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWTWEFLTEVVGLDKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G+SAD+I R    DNFW     GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYQDDDEAFDIWNKEIGVSADRIFRFGKEDNFWEHG-AGPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG     + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFNNDGHNNYTELEQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++ G++Y  +    V+ R+I DH+RS +F+ +DGI+P+NEGRGY
Sbjct: 241 SIFDVDTIKALRDKVCEMAGVEYETDHEKDVSIRLITDHIRSVTFMTSDGIVPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +      AYPEL + K  I   +  E+E F 
Sbjct: 301 VLRRLLRRAARHGRLLGIKGKFLSELAKTVIEVSEDAYPELCEKKEYIFNKIDKEEESFN 360

Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D GL +L   +       +++L+GD AFKLYDT+G PLD+ ++I+       +D   
Sbjct: 361 KTIDTGLAILKDYIEETKAAGEKVLSGDKAFKLYDTYGFPLDLTKEIIE-EEGIEVDEAR 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + +  Q+  AR           +   +        ++F+GYD L     +      L 
Sbjct: 420 FTECMNIQKETARNARQTTTYMGADATVYEQLPVDMTSEFVGYDKLTYKSKITAITTELG 479

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +                  ++  + +    G +  ++  +TPFYA  GGQ+GD G     
Sbjct: 480 EGKD---------------KKSVLADTVSEGAQATIIVPETPFYATMGGQIGDKGIIKTK 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + D  K   G   H   VE G L       LT+D +NR  +  NHSATHLL  AL
Sbjct: 525 NGTFVVEDTVKVVGGKIAHIGYVESGELNVGDEAELTVDAENRALICNNHSATHLLQKAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS + P  LRFD +H + +T  E+K +ED VN+ I  ++PV T IM  +
Sbjct: 585 KMVLGDHVEQAGSLVEPGRLRFDFSHDQAMTKEEIKKVEDIVNEQIQLDVPVCTDIMTVD 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY ++VRVVS+     G  S   CGGTHV++TG I +  IVSE+ + 
Sbjct: 645 EAKKTGAMALFGEKYGEKVRVVSI-----GDFSKEFCGGTHVANTGVIGMFKIVSETGVA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG RRIEA+T   A  +    + +L   A   K     V  R+E++  E ++L   + K 
Sbjct: 700 AGTRRIEALTSIGALEYYRSMESELVEAAKAAKTDIHGVAARIEQLLAEVKELTNENKKL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++  E       +      +  ++  I + D   L+++ D  + K+   I++L    K
Sbjct: 760 KDKMAKEAAGDVLSNAIDKDGIKILTAAIPDTDMNSLRNLGDDFKSKLGDSIVVLASA-K 818

Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++ + T+  +    +A ++ +  A ++GGGG GGRP+MAQ+GG + N  D A+A 
Sbjct: 819 DGKVNLIAMATDGAVAKGAHAGNIIKAVAGLVGGGG-GGRPNMAQAGGKDPNGIDAALAQ 877

Query: 892 V 892
            
Sbjct: 878 A 878


>gi|325104121|ref|YP_004273775.1| alanyl-tRNA synthetase [Pedobacter saltans DSM 12145]
 gi|324972969|gb|ADY51953.1| alanyl-tRNA synthetase [Pedobacter saltans DSM 12145]
          Length = 880

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/926 (34%), Positives = 496/926 (53%), Gaps = 78/926 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF   GH+++PS+ ++  NDPTLMFTN+GM  FK++F G+    Y  V
Sbjct: 3   MTAKEIRQAFLDFFASKGHQIVPSAPIVVKNDPTLMFTNAGMNQFKDLFLGEAPIKYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT    LD
Sbjct: 63  ADTQRCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTDVLKLD 122

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++ DE        +A+  WK    +   +I++    DNFW M +TGPCGPCS
Sbjct: 123 KDRLYVTVFEGDEKEGLPMDQDAYDFWKAF--VPESRILKGNKKDNFWEMGDTGPCGPCS 180

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI FD           G    + +  + IEIWN VFM+F +        LP   +DTGMG
Sbjct: 181 EIHFDNRSDEERAKVDGATLVNADDPQVIEIWNNVFMEFNRLKDGSLKKLPAQHVDTGMG 240

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHLR 280
            ER+  V+Q KT+NYD D+F  +I    +  G+ Y              V  RV+ DH+R
Sbjct: 241 FERLVRVIQGKTSNYDSDVFTPIIDFISKSAGIPYNAAATPDDKDWGQAVAMRVMADHIR 300

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339
           + +F IADG LP+N   GYV+RRI+RRA+ YA   LG+ EP +  L+P L  +    + E
Sbjct: 301 AIAFAIADGQLPSNNKAGYVIRRILRRAVRYAYQYLGFKEPFLNKLVPLLAAQFKGVFDE 360

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           LI  +  +++ +  E+  F +TL+ G+   +  +      +I +G  AF+LYDT+G P+D
Sbjct: 361 LISQQDFVQKVILEEENSFLRTLENGINRFEKYIQDNQDRQI-DGAFAFELYDTYGFPID 419

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + + +   +GL  +D+  F+  L++Q+ R+RA      +      W ++ E     +F+G
Sbjct: 420 LTELMAREKGLT-VDMAGFDTELQKQKERSRAA-----TAIDAGDWITVNED-DEVEFVG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD +  +  + + RKV                            +A   ++ ++V D TP
Sbjct: 473 YDEVVATSRILKYRKV----------------------------KAKGKEQYQLVLDVTP 504

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE+GGQ+GD+G    +   + I D +K+   I       +        + +  ++   
Sbjct: 505 FYAESGGQVGDSGVLENENESIIINDTKKENGLIIH---FADVLPHNLNATFIAKVNVHT 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR    NHSATHLLH AL  +LG HV+Q GS +  D LRFD +H   +T  E+  IE  V
Sbjct: 562 RRLTENNHSATHLLHAALKAVLGDHVNQKGSLVNADVLRFDFSHFSKVTEQEIAKIEAIV 621

Query: 640 NDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  + +N+P    R +  + A+ SG  AL G KY D VRV++ +      +S  LCGGTH
Sbjct: 622 NQKVRENIPLKEERNVPYQKALESGVTALFGEKYGDYVRVITFDDS----YSKELCGGTH 677

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG+I    IVSES++ AG+RRIEAIT  +A  ++  Q + L  L   LK +  ++  
Sbjct: 678 VKATGQIGYFKIVSESAVAAGVRRIEAITADKAEEYINNQAQLLAVLKELLK-NPKDLTK 736

Query: 759 RVEEIWEEYRKLQLIHAK--RKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVM 813
            VE + EE  KL+    K   +    ++D+   K   + DVN ++  I   +++ +K++ 
Sbjct: 737 SVESLLEENNKLKKEIEKSVLEKASVLKDVLKSKVTVVNDVNLIAEEIDLSNAEAIKNLA 796

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR 871
             L+  + +  ++L G + + K ++ ++++++L+     +A  + R  AK + GG GGG+
Sbjct: 797 YQLKDIVDNLFLVL-GANIDGKPNLTVMISDNLVKEKGLDAGKIIRELAKEINGG-GGGQ 854

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLK 897
           P  A +GG N      A+     +LK
Sbjct: 855 PFYATAGGKNPEGLKSALEKAIIYLK 880


>gi|314933784|ref|ZP_07841149.1| alanine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653934|gb|EFS17691.1| alanine--tRNA ligase [Staphylococcus caprae C87]
          Length = 876

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/914 (37%), Positives = 509/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED  A+K+W +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDTGAYKIWNEDIGLDETRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G+      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGDEYGQNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q    NY+ DLF  +I   E V+G KY       V  +VI DH+R+ +F IADG 
Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENVSGKKYLEVEEQDVAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++      +  + G+ AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLEEGLSILNQLIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L+ +D+ +F   +++QR RAR       S   +     LK     + F+GY+        
Sbjct: 414 LS-VDMTTFENEMQQQRDRARQARQSSQSMQIQSEV--LKNITDDSTFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               SI+  ++  GE VE   +G+ V      TPFYA +GGQ+ 
Sbjct: 467 -------------------QSIITHLIYNGEEVESVEAGETVYFTLKATPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + +++V K   G  +H  IV+ G       +  +++ ++RR +  NHSA
Sbjct: 508 DEGTIGNDKFEIAVSEVTKAPNGQNLHKGIVQYGQATVGAEVDASVNKEDRRAIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  D LRFD +H  P+T  EL  +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGYHVNQAGSLVEADRLRFDFSHFGPMTQEELDQVERRVNEEIWRGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M  ++A + GA AL G KY+D VRVV++        S  LCGG HVS+T EI L  
Sbjct: 628 RIQEMGIDEAKSMGAMALFGEKYSDIVRVVNMAP-----FSIELCGGIHVSNTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L     K  ++ + +KV     VVG+V ++ EE +
Sbjct: 683 IVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNHVKVKSDEQVVGKVTQLQEEEK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +     I D+  ++  +   ++K ++S MD  + K+Q  
Sbjct: 743 SLLKQLEQRNKEITSLKMGNVEDQVEVINDLKVLATEVEVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L D+  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIVLAS-NVDGKVSIIATVPKSLTDQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              +A+  +  ++K
Sbjct: 861 NITEALHFLKDYIK 874


>gi|313895726|ref|ZP_07829282.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975852|gb|EFR41311.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 875

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/911 (36%), Positives = 511/911 (56%), Gaps = 59/911 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + +R T+L+FF +K  H  L S SLIP +DPTL+   +GM P K  FTG+ KP    
Sbjct: 4   MTGNELRETYLQFFAEKKDHLRLASYSLIPEDDPTLLLIGAGMAPLKPFFTGKMKPPRPR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L
Sbjct: 64  ITTSQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIEL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++++Y +D EA  +W +  GL  D I+ +   DNFW +   GPCGP SEI+ D G
Sbjct: 120 PKEKLWVSIYPDDNEARAIWLEQPGLLPDHIVPLN--DNFWEIGP-GPCGPDSEIYIDLG 176

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +R++EIWNLVF Q+++  + E  +L   +IDTG GLER+A+V+Q
Sbjct: 177 EERGCGEPTCGVGCDCDRFLEIWNLVFTQYDRTEEGEYNLLAHKNIDTGCGLERLASVVQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I  + +++G+ Y  +    ++ +VI DH RS S +I DGILP+NEG
Sbjct: 237 NKETNFETDLLYPIIAYASKISGVAYGSDKRKDISLKVIADHARSISVMIMDGILPSNEG 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRR +RRA+ + R+LG T+P +   + A+      A  + EL   +  I+  +R E
Sbjct: 297 RGYVLRRTLRRAIRHGRMLGITDPFLDGAVDAVVEIFRGAPDFSELTAKQEYIKRVIRVE 356

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF  TL +G+ LL+G +  L ++   +L GD+ FKLYDT+G P ++ ++IL   G+  
Sbjct: 357 EERFASTLAQGMELLNGEIGRLKEENKVVLPGDIGFKLYDTYGFPRELTEEILHEHGIT- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D + F++ +E QRSRAR+                                        D
Sbjct: 416 LDGVEFDKEMEAQRSRARSARA-----------------------------ENQVVAVPD 446

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +        +    ++V AI + GEIV+    G+   ++ D+TPFYAE GGQ+GD G
Sbjct: 447 LSNIDTSALRSDSTAKEAVVAAIWRDGEIVDSLRDGESAGIILDRTPFYAEGGGQVGDEG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   + I++ +K  +G   H A VE G +     + +T++ + +   + NH+ATHL
Sbjct: 507 VLRSDLGYISISNAKKLPDGTIYHIAYVEEGEIHRGDRVDITVNRERKLSSARNHTATHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G+HV Q GS +TPD LRFD T+ +P+T  +++ IE+ VN  I +++ +   
Sbjct: 567 LQAALQRVVGAHVKQAGSLVTPDRLRFDFTNFEPVTEQQIRDIEELVNAEILRSVDLDIS 626

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M   DA   GA AL G KY D VRVVSV        S  LCGG+HV +TG+I L  I+ 
Sbjct: 627 MMPIADAKNMGAMALFGEKYGDIVRVVSVPG-----FSIELCGGSHVGNTGQIGLFKIIG 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEAITG+ A S+       ++ ++  LK    ++  ++++  +E + +Q 
Sbjct: 682 ESGVAAGVRRIEAITGKAAFSYAATLYHTVQEISEKLKTRPEDLSSQIDKFLDERKAMQE 741

Query: 773 IHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              +      K       ++  +I   + +    +     EL+++ D   +K+  GI++L
Sbjct: 742 QLRQFAEFRDKADAQKLLMAVREIGAFHVVVGKANVDSMDELRTIADLACEKLDHGIVIL 801

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K S+++   ++ +    +A  + + +AK +GGGG GGRP MAQ+GG       
Sbjct: 802 AAV-IDDKVSLVVKADKNAVSAGAHAGQIIKEAAKEVGGGG-GGRPDMAQAGGKTPENIP 859

Query: 887 QAIAGVASFLK 897
           QA     S ++
Sbjct: 860 QAFDAAISVIQ 870


>gi|260887236|ref|ZP_05898499.1| alanine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|260863298|gb|EEX77798.1| alanine--tRNA ligase [Selenomonas sputigena ATCC 35185]
          Length = 871

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/912 (37%), Positives = 512/912 (56%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + +R  +L+FF +K GH  LPS+SLIP NDPTL+   +GM PFK  FTG+ KP    
Sbjct: 1   MTGNELREAYLQFFAEKKGHLRLPSASLIPANDPTLLMIGAGMAPFKPFFTGKMKPPRTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT Q+CVR G    D++NVGRT RH T+FEMLGNFSFG YFK+ AI  AW+ LT   DL
Sbjct: 61  ITTSQRCVRTG----DIENVGRTARHQTYFEMLGNFSFGDYFKKEAIPWAWEFLTDVLDL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TVY +D+EA  +W++  G   D I+++   DNFW +   GPCGP SEI+ D G
Sbjct: 117 PKEKLWVTVYPKDDEAAAIWREQPGFPQDHIVKLD--DNFWEIGP-GPCGPDSEIYIDLG 173

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +RY+EIWNLVF QF++    +   L   +IDTG GLER+A+VLQ
Sbjct: 174 EERGCGSPDCAVGCDCDRYLEIWNLVFTQFDRTEDGQYNPLEHKNIDTGCGLERLASVLQ 233

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I+ + +V+G+ Y       V+ +VI DH RS + +I DGILP+NEG
Sbjct: 234 NKKTNFETDLLFPIIEYASKVSGVVYGENAEKDVSLKVIADHARSMAIMIMDGILPSNEG 293

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRRI+RRA+ + R+LG  +  +   + A+      A  + EL + K  I++ +  E
Sbjct: 294 RGYVLRRILRRAVRHGRILGIHDKFLEGAIDAVAEIYKGAADFEELAEKKEYIKKVISIE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++RF  TL +G+ LL+G +  L ++  ++L G++ FKLYDT+G P ++  +IL       
Sbjct: 354 EDRFAATLAQGMELLNGHIEDLKREGKKVLPGEIGFKLYDTYGFPWEVTDEILHE-NEME 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  SF +A+EEQR RARA                                   +    D
Sbjct: 413 LDKDSFEKAMEEQRERARAARQ-----------------------------ENQRVAVPD 443

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +         N   S V AI + G +V+E   G++  ++   TPFYAE GGQ+GD G
Sbjct: 444 LSGIDTSHLCVDENAKESTVVAIWKDGVLVDELADGEEAGIILQSTPFYAEGGGQVGDAG 503

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +  R+Q+ + +K  +G   H   VE G+L+    + + ID+  +   + NH+ATHL
Sbjct: 504 LLETEFGRVQVANAKKLPDGTVYHIGYVEEGMLKVGDHVSIRIDWMKKLSSARNHTATHL 563

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G  V+Q GS + P+ LRFD ++ +P+T+ +L+ +E  VN+ I    PV   
Sbjct: 564 LQAALKRVVGDQVNQAGSLVMPERLRFDFSNFEPVTALQLQEVERLVNEQILMAKPVEIA 623

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  + A   GA AL G KY D VRVVSV        S  LCGG+HV + GEI +  IVS
Sbjct: 624 QMEIDKAKKLGAMALFGEKYGDVVRVVSVP-----DFSIELCGGSHVKNIGEIGMFKIVS 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I +G+RRIEA+TG+ A  ++  + E L + A   K     +V  +E    E +KL+ 
Sbjct: 679 ETGIASGVRRIEALTGRAAIDYMNEKAETLAAAAHAFKCRDDEIVSHIESTLAENKKLKQ 738

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A    +  + D         +I D++F S I+   +  +L+ + D L  +++SG+++L
Sbjct: 739 EIASFTKERAMGDVDTLLAQKKQIKDLSFASGIVEADNIDDLRKIADMLLDRLESGVVVL 798

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                E K S++   ++  + +  +A ++ + +AK++GGGG GGR  MAQ+GG    K  
Sbjct: 799 AAAH-EGKVSLVAKASDAAVAKGAHAGNIVKAAAKIVGGGG-GGRKEMAQAGGKEPAKMP 856

Query: 887 QAIAGVASFLKK 898
           +A+      L +
Sbjct: 857 EALQEAERVLAE 868


>gi|302533385|ref|ZP_07285727.1| alanyl-tRNA synthetase [Streptomyces sp. C]
 gi|302442280|gb|EFL14096.1| alanyl-tRNA synthetase [Streptomyces sp. C]
          Length = 889

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/923 (35%), Positives = 510/923 (55%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP     
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVNAGMVPFKPYFLGETKPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY +D+EA  +W+ + G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYLDDDEAETIWRDVIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +   P        +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + +++ + ++TG++Y     + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMEKATELTGVRYGAAKGSDVSMRVVADHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RL+G T P++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVQDLIDVVIDTMGQQYPELITDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K +  G  +LD  +  +      +L+GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKAVKGGTNILDTAVTETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  GAT+F GY     
Sbjct: 415 EQGLS-VDEPGFRRLMQEQRDRAKADAKAKKTGHADMSAYREIADGSGATEFTGY----- 468

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              TN   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 469 ------------------ATNQGESTIVGLLVNGVSAPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  +++ DVQ+   G+ VH   V+ G +    S    ID + RR ++
Sbjct: 511 GQLADQGRIKLDTGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +ND+++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINDVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVTAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTSQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIASML 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +  ++  +       D+  ++ ++ +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLASNAQDIRGVALVVGQVPDGTGADDLRKLVLDVRG 805

Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ     ++ L  ++ ++  +V+            A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIQGDRPAVVALFTVANDRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N     +AIA V   + +
Sbjct: 865 QGGGQNPGAVPEAIAAVERLVAE 887


>gi|113478168|ref|YP_724229.1| alanyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|122964340|sp|Q10VG8|SYA_TRIEI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110169216|gb|ABG53756.1| alanyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
          Length = 874

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/905 (37%), Positives = 504/905 (55%), Gaps = 53/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL F+ +  H +LPS+SL+P  DPT++ T +GM+PFK IF GQ+   Y   T
Sbjct: 7   TGNEIRKKFLSFYAQREHTILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQPRQYPRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK  AI LAW+L TK F L  
Sbjct: 66  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKPEAIALAWELSTKIFALPP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ ED+EAF +W+   G+ A +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 122 ERLVVSVFREDDEAFAIWRDQIGIPAHRIQRMDEADNFWASGPTGPCGPCSEIYYDFHPE 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  N
Sbjct: 182 L-GDDHIDLEDDTRFIEFYNLVFMQYNRDANGNLTPLENRNIDTGMGLERMAQILQKVPN 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  +  + Y  ++     + +VI DH+R+ + LIADG+  +N GRGY
Sbjct: 241 NYETDLIFPIIKTASDIADIDYRKSDDKTKVSLKVIGDHVRAVANLIADGVTASNVGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G +      +     T     YP L + + +I+  L+ E+ RF 
Sbjct: 301 ILRRLIRRVVRHGRLIGISGEFTSKVAETAITLAEDIYPNLRERETVIKAELQREESRFL 360

Query: 360 KTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TL+RG  LL  +++     K + ++G+ AFKLYDT+G PL++ Q+I    GL  +D+  
Sbjct: 361 ETLERGEKLLAEIMAKPETKKTQHISGEDAFKLYDTYGFPLELTQEIAEENGLT-VDVSM 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+Q ++  + R+++    +     + +   +      TQF+GY  L              
Sbjct: 420 FDQEMKLAQIRSQSAHETIDLTAQDGVKLDI----DKTQFLGYTDLSSP----------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V A+V  GE +E   +G +V++V D+TPFYAE+GGQ+ D G   GD
Sbjct: 465 ------------AQVMALVGDGEQLETVQAGAQVQIVLDKTPFYAESGGQIADRGYLSGD 512

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + ++I DV +K   IFVH   +ERG L+  M++   ID   RR+   NH+ATHLL  AL
Sbjct: 513 SLVVRIEDV-QKQNNIFVHFGRIERGRLQLGMTVNAQIDGTCRRRAQANHTATHLLQAAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            +++ S +SQ GS ++ D LRFD    + +   E++ +E  VN  IA+        M  E
Sbjct: 572 RSLVDSSISQAGSLVSFDRLRFDFNCPRGLKPEEVEQVEAQVNSWIAEAHSATVAEMPLE 631

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A GA A+ G KY D VRVV          S  LCGGTHV++T EI +  I+SE+ I 
Sbjct: 632 VAKAKGAVAMFGEKYADVVRVVDYPG-----VSMELCGGTHVNNTAEIGVFKIISEAGIS 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G     +L  +D  +K L+   K     +  RV  + +E +  Q      
Sbjct: 687 SGVRRIEAVAGLAVLDYLKVRDAVVKELSDRFKAKPEELSERVSNLQQELKDSQKQLEAL 746

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L V        +   + +   +   +  VD++ LK+  + LQ+K+    ++L G + 
Sbjct: 747 KGELAVAKSDQLLGNAETVGEFQILVAEMPGVDAEALKTAAERLQQKLDESAVVL-GSAA 805

Query: 833 EKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K S++   ++ +      A       AK+ GGGG GGRP++AQ+GG + +K  +A+  
Sbjct: 806 EGKVSLVAAFSKSVNGKGLQAGKFIGGIAKICGGGG-GGRPNLAQAGGRDPSKLKEALES 864

Query: 892 VASFL 896
               L
Sbjct: 865 AKEQL 869


>gi|319957309|ref|YP_004168572.1| alanyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
 gi|319419713|gb|ADV46823.1| alanyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
          Length = 859

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/896 (37%), Positives = 511/896 (57%), Gaps = 52/896 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  +L++F + GH ++PSS L+P +DPTL+FTN+GMV FK+IFTG+   P     T+ 
Sbjct: 2   DIRKMYLDYFAQRGHRVVPSSPLVP-DDPTLLFTNAGMVQFKSIFTGEAPIPNPPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T  +   L  
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFVTGEEYLALPV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-E 181
            ++++TV++ D+EA+++WK+   ++ ++I R    DNFW M +TGPCGPCSEIF+DQG E
Sbjct: 121 EKIWVTVHESDDEAYEIWKE--HIAEERIKRFGDKDNFWQMGDTGPCGPCSEIFYDQGAE 178

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G       +G+R++EIWNLVFMQ+E+    E   LPK SIDTGMGLER+  + +   
Sbjct: 179 HFNGPEDYMGGDGDRFLEIWNLVFMQYERDETGELHPLPKPSIDTGMGLERVVAIKEGVF 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYD  LFK LI A  ++ G       I ++RVI DHLRS++FL+A G+    EGRGYVL
Sbjct: 239 NNYDSSLFKPLIDAITEIVGKAPTEETIASYRVIADHLRSTTFLLAQGVNFDKEGRGYVL 298

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRA+ +  LLG  EP M  L+  L  +MG  Y  L +    ++  ++ E+ERF +T
Sbjct: 299 RRIMRRAIRHGYLLGLREPFMHRLVDTLVEQMGGHYDYLPKRAEAVKTAMKMEEERFFET 358

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           ++ G+ L +  L      ++ +G+VAFKLYDT+G PLD+ QD+L  +G   +D+ +F   
Sbjct: 359 IEAGIKLFNEELQRT--KDVFSGEVAFKLYDTYGFPLDLTQDMLREKG-IELDMATFEGK 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQ++++RA   G G       + +L+E++G  +F+GY+       +            
Sbjct: 416 MAEQKAKSRAAWKGSGDAAVSGDFKALEERHGPNRFVGYEETDTKTRI------------ 463

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIR 540
                     V  + +  + V++        V+ D TPFYAE+GGQ+GD G   +  G  
Sbjct: 464 ----------VALLDENFKEVQKLEG--LGWVMLDPTPFYAESGGQVGDRGELVVWSGGP 511

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
                  +K   + + +   E   L     +   +D   R+ ++ +HSATHLLH AL  +
Sbjct: 512 NVKVLDTRKFHALNLSYVDTEGNTLEVGQEVEALVDDSRRQ-IAKHHSATHLLHAALREV 570

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +    LRFD TH K +++ EL+ +E  VN+++ + +    +++  E+A 
Sbjct: 571 LGEHVTQAGSLVEATRLRFDFTHPKALSAEELQKVEHWVNEVVDRAIEGEVKVLPIEEAK 630

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY D VRVV       G  S  LCGGTHV +T E+ L  I  ES + AG+
Sbjct: 631 KEGAMALFGEKYGDEVRVVRF-----GDASVELCGGTHVRNTAEVGLFAITKESGVSAGV 685

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+ G+ +         + K +   +K      +  + ++ E+ + L+       L 
Sbjct: 686 RRIEAVCGKESAKLFDHLRRERKEIVEAVKNP--EPLAGIAKLKEQIKTLKSELDAA-LA 742

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
              ++L+  KI D+  +   + EV + ++K ++D ++ + +   +ML     +K   +L 
Sbjct: 743 GGAKELAEEKIGDITVI---VDEVKAGDIKKMIDEIKNRHEKVAVMLFQKKGDK--VLLA 797

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +++      A D  +  A +LGGGG GGRP  AQ+GG N  K  +A+     +L
Sbjct: 798 AGSKNTP--VKAGDWIKEVAPILGGGG-GGRPDFAQAGGKNPEKIPEAMRAAKGYL 850


>gi|309791340|ref|ZP_07685863.1| alanyl-tRNA synthetase [Oscillochloris trichoides DG6]
 gi|308226650|gb|EFO80355.1| alanyl-tRNA synthetase [Oscillochloris trichoides DG6]
          Length = 895

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/918 (38%), Positives = 523/918 (56%), Gaps = 56/918 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR T+L+FF+++GH ++PS+SL+  +DPTL+F NSGMVPFK++F G E+  Y   TT
Sbjct: 8   AAQIRETYLKFFERHGHTIVPSTSLVVADDPTLLFVNSGMVPFKDVFLGLEQRPYSRATT 67

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R  GKHNDL+ VG + RH TFFEMLGNFSFG YFK  AI +AW LL +EF L   
Sbjct: 68  AQKCLRVSGKHNDLEEVGPSPRHQTFFEMLGNFSFGDYFKADAIAMAWKLLVEEFKLPVE 127

Query: 124 RLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           RL+ TV+  D+      EA +LW    G    +++R    DNFW M +TGPCGPCSEI  
Sbjct: 128 RLWFTVFAGDDEVPADEEAAQLWIAQ-GADPARVLRFGRKDNFWVMGDTGPCGPCSEITM 186

Query: 178 DQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
             G+ +      G + +   Y+EIWN VFMQ+E+        LP+ S+DTGMGLERM  V
Sbjct: 187 YIGDDLAKMSAAGVNSDDPDYVEIWNNVFMQYERS---TMRPLPRQSVDTGMGLERMTMV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   +NYD DLF  +I       G    +   N+  +R I DH R+ +FLIADG+LP N
Sbjct: 244 MQGVHSNYDTDLFVPIINRIITELGSDEAHYRANLAPYRAIADHSRAIAFLIADGVLPGN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GR YVLRRI+RRA    R +G+T P +  ++  +  EM  AYP+L +    I E+  +E
Sbjct: 304 NGRSYVLRRILRRAAYQGRSIGFTRPFLAEVISTVIGEMAPAYPQLAERHAFILESANAE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +++F +TL  G+  L  ++  +       + G+ AF L DT+G PLD+ Q I    GL  
Sbjct: 364 EQQFLRTLSGGISRLSTIIEQVQSSGGNAVPGNDAFVLKDTYGFPLDLTQRIAGEAGLT- 422

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   +  A+ EQR R+RA +     G   +IW    +   +T+F+GY  +         
Sbjct: 423 VDEAGYTAAMNEQRERSRAAAQF-KRGADAEIWAD--KGLPSTEFLGYTQV--------- 470

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           S  + A+V  G+ V  A +G  VE+V D+TPFYAE+GGQ+GD+G
Sbjct: 471 --------------AASGQILALVANGDDVSSATTGSPVEIVLDRTPFYAESGGQVGDSG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G    +++ D  + A G+ VH+ +VE G +    ++   +    R  +  NH+ATH+
Sbjct: 517 RLVGPHGTVRVDDTLRPAPGLIVHYGVVESGQVTVGEAVQAEVAVTRRADIERNHTATHM 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G H +Q GS + PD LRFD TH++ + +A+L+ IE  +N  +  +  V  +
Sbjct: 577 LQRALRDVVGEHAAQAGSLVAPDRLRFDFTHNRALDTAQLREIESRLNAWVRADGAVAWQ 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIM 706
           +M+ + A+ +GA AL G KY D+VR+V++E       E     S  LCGGTHV  TGEI 
Sbjct: 637 VMDYQAALDAGAIALFGEKYGDQVRMVTIERNGTTSMEFASRDSRELCGGTHVKRTGEIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + +V ESSI +GIRRIEA+TG+ A      Q E L+ LA  L VS   V  RVE++  E
Sbjct: 697 YVRLVGESSIGSGIRRIEALTGRGAEVWAEQQAEVLRDLAGRLGVSVAQVSERVEQLVSE 756

Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+ Q      + ++    +       ++   V  ++  +   D+  L+ + D L+ K+ 
Sbjct: 757 NRQRQQELDALRGKMARASIESLLDTVNRDGAVPVLAAQVEAEDANRLREMGDWLRDKLG 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           SG+I+L  +  E K  +L +VT DL+   ++A +L +  A+++GGGG GGRP MAQ+GG 
Sbjct: 817 SGVIVLGTVIAE-KPQILTMVTPDLVKAGYHAGNLVKALAQIVGGGG-GGRPEMAQAGGR 874

Query: 881 NGNKADQAIAGVASFLKK 898
           +  K  + IA     + +
Sbjct: 875 DVRKLAEVIARAPELVAE 892


>gi|223044141|ref|ZP_03614180.1| alanyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442535|gb|EEE48641.1| alanyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 876

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED  A+K+W +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDTGAYKIWNEDIGLDETRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G+      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGDEYGQNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q    NY+ DLF  +I   E V+G KY       V  +VI DH+R+ +F IADG 
Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENVSGKKYLEVEEQDVAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++      +  + G+ AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLEEGLSILNQLIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L+ +D+ +F   +++QR RAR       S   +     LK     + F+GY+        
Sbjct: 414 LS-VDMTTFENEMQQQRDRARQARQSSQSMQIQSEV--LKNITDDSTFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               SI+  ++  GE VE   +G+ V      TPFYA +GGQ+ 
Sbjct: 467 -------------------QSIITHLIYNGEEVESVEAGETVYFTLKATPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + +++V K   G  +H  IV+ G       +  +++ ++RR +  NHSA
Sbjct: 508 DEGTIGNDKFEIAVSEVTKAPNGQNLHKGIVQYGQATVGAEVDASVNKEDRRAIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  D LRFD +H  P+T  EL  +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMTQEELDQVERRVNEEIWRGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M  ++A + GA AL G KY D VRVV++        S  LCGG HVS+T EI L  
Sbjct: 628 RIQEMGIDEAKSMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVSNTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L     K  ++ + +KV     VVG+V ++ EE +
Sbjct: 683 IVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNHVKVKSDEQVVGKVTQLQEEEK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +     I D+  ++  +   ++K ++S MD  + K+Q  
Sbjct: 743 SLLKQLEQRNKEITSLKMGNVEDQVEVINDLKVLATEVEVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L D+  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIVLAS-NVDGKVSIIATVPKSLTDQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              +A+  +  ++K
Sbjct: 861 NITEALHFIKDYIK 874


>gi|308233742|ref|ZP_07664479.1| alanyl-tRNA synthetase [Atopobium vaginae DSM 15829]
 gi|328943732|ref|ZP_08241197.1| alanine--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327491701|gb|EGF23475.1| alanine--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 882

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/905 (37%), Positives = 505/905 (55%), Gaps = 44/905 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  G +   SSSLIP  DP+L+  N+GM  FK  + G +       
Sbjct: 9   MTTAEIREDFLSFFESKGCKRYESSSLIPE-DPSLLLANAGMNQFKEYYQGTKTMREIGA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119
           T+ QKC+R     ND++N+G   RH +FFEMLGNFSFGGY K +AI  AW+ +T      
Sbjct: 68  TSCQKCLRT----NDIENIG-DARHLSFFEMLGNFSFGGYTKAQAIAWAWEFITSPAHLG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + RLY+TV+ +D+EA +LW++  G++ D I R+   DNFW+   TGPCGPCSEI+FDQ
Sbjct: 123 LPKDRLYVTVFTDDDEACELWQQQ-GVALDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQ 181

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G    G  P   ++G+RY+E WNLVF QF++Q       LP  +IDTGMGLERMA ++Q 
Sbjct: 182 GPSFEGEKP--GDDGDRYLEFWNLVFTQFDRQEDGSMPELPHRNIDTGMGLERMAAIMQH 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +NY+ D+ + LI   E+++   Y  +     + R++ DH R+ +F+I DGILP NEGR
Sbjct: 240 EGSNYEGDVLRSLIGVGEELSHKTYHSSERVDTSLRILADHARAVTFMIGDGILPGNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + RL+G     +      +   M   YP+L+Q K LIE  + +E++R
Sbjct: 300 GYVLRRLLRRAIYHGRLMGIEGSFLTKYSAEVMRLMAQVYPQLLQNKALIEGIISAEEQR 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TLD G   L   L+HL    +L G+VAFKL+DT+G P+D+ ++I    G   +D+ +
Sbjct: 360 FTATLDAGEQALKDELAHLDAGSVLPGEVAFKLHDTYGFPIDLTREIALGLGH-DVDMDT 418

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + +E+QRSRARA +     GT+  +W  L + +  T F+GYD                
Sbjct: 419 FEKLMEDQRSRARAQATRDAWGTSNSVWAKLSDSHEMTTFVGYDHNTLDG---------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V A+V  G  V++  +  +VEVV D TPFY E GGQ+GDTG    +
Sbjct: 469 ------------AHVVALVVDGASVDKVQANTRVEVVLDATPFYGERGGQVGDTGYLSNE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            ++L++ +   +   +  H  ++E+G L    +L   ID   R  +  NH+ATHLL  AL
Sbjct: 517 SVKLRVENTLHREGELLSHECVLEQGTLAVGDTLNCAIDVHRRECIRRNHTATHLLDAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HVSQ GS + PD LRFD TH + +T A++  +E  VND I    P+VTRIM+RE
Sbjct: 577 IKVLGDHVSQAGSLVAPDRLRFDFTHFEALTPAQIAQVEQLVNDEIFAAEPMVTRIMSRE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  SGA  L    Y D VRVVS    D   +S  LCGGTH  +T +I    I+SE+S+ 
Sbjct: 637 EAKNSGAIQLFEDMYGDDVRVVSTGTSD-HPYSRELCGGTHARNTADIGCFKIISETSVG 695

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + +RR+EA+T      ++  ++++L  +A  LK    +VV RVE + +E   L+    + 
Sbjct: 696 SNVRRLEALTSLGYIDYMKTREDELSQIACLLKCRPQDVVSRVEALKDEKNALEKKVKEA 755

Query: 778 K-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGIS 831
                  +++    +   + D   +   +  V  K+L+SV D + +++      +L+  +
Sbjct: 756 LTGSSSQKVSSALENALDLGDYKVVLAHLEGVSGKDLRSVWDGIHQRLGEKSACVLLSAT 815

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            +K   +       +   FNA  L +  A     G GGGRP MAQ+GG      + A+A 
Sbjct: 816 ADKVQLLAAATQAAVDAGFNAGALIKNIAP-CVDGRGGGRPVMAQAGGNRVEGINDALAL 874

Query: 892 VASFL 896
               L
Sbjct: 875 AKQLL 879


>gi|291460300|ref|ZP_06599690.1| alanine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417055|gb|EFE90774.1| alanine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 882

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/904 (37%), Positives = 505/904 (55%), Gaps = 40/904 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF++  H  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRMFLEFFEEKQHLRMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFKE AI  AW+ LT+   +   
Sbjct: 66  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKEEAIHWAWEFLTERVGIPAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++WK+  G++ ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLDDDEAFRIWKEEIGIAPERIYRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 P-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       EG+R++E+WN+VF QF          L   +IDTGMGLER+A V Q+  +
Sbjct: 181 GTGPEDVMGGEGDRFMEVWNIVFSQFNNDGHGVYTELEHKNIDTGMGLERLAVVCQDVLS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D  + +++    +   +Y  +    V+ R+I DH++S +F+ +DGILP+NEGRGYV
Sbjct: 241 LFDVDTNRAMMEEIGALAHCRYEEDPEKDVSFRIIADHVKSCTFMASDGILPSNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            RR++RRA  + ++LG     M  L   +       YPEL + + +I   +  E+ERF  
Sbjct: 301 FRRLLRRAARHGKILGLKGRFMAALSQKVIELSKDGYPELEEKREMILRVIEQEEERFQN 360

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+GL +L  +   + K   ++L+G+ AF+LYDT G P D+ ++IL  +G + ID   F
Sbjct: 361 TIDKGLEILSELQEEMKKRGEKVLSGEDAFRLYDTFGFPPDLTREILSDKGQS-IDEEGF 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +A+  QR  ARA          + I+  L  K   T+F GY  L     +    ++  +
Sbjct: 420 QKAMRLQRETARAARKSTNYMGRDDIYQRLDPKL-RTEFTGYHSLTERSKITALVRLAPE 478

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                              + EIV+    G++  V+ ++TPFYA  GGQ+GDTG  +G  
Sbjct: 479 DG-----------------EDEIVDVLTDGERGAVLTERTPFYATMGGQVGDTGSILGGE 521

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + +      G       +  G+L+      L +D   R + + NH+ATHLLH AL 
Sbjct: 522 GDFTVEETIHLQGGKIAEIGTMRSGMLKAGEEAELRVDPIRRERTARNHTATHLLHEALR 581

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV Q G+      LRFD TH + +T  E++ +E+ VN  I++  PV T  M+ ED
Sbjct: 582 EVLGNHVEQAGAYYDDKRLRFDFTHFEALTEEEIRKVEEIVNREISKLTPVKTEEMSLED 641

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  SGA AL G KY DRVRVVSV     G  S  LCGGTHV++T EI  L I+SE  I +
Sbjct: 642 AKKSGAVALFGEKYGDRVRVVSV-----GDFSKELCGGTHVANTAEIQGLKILSEQGIAS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+T +   ++   ++E L+  A  LK    ++  R+  + +E +  +      +
Sbjct: 697 GVRRIEALTSENLMAYFSEEEELLREAAKLLKTEPKHLSERILALEKELKDSRAEAESLR 756

Query: 779 LQLNVE---DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            +L  E   +LS  +I+ V+F++  +   D   L+ + D L+++     I+L    K  K
Sbjct: 757 AKLAKESMGELSVEEISGVSFLAKALEGADGNSLRELGDQLKERYPDAFIVLAS-DKGGK 815

Query: 836 ASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
             ++    +  + +  +A  L R  A +LGGGG GGRP+MAQ+GG + ++  +A+     
Sbjct: 816 PCLMATAADSAVKKGADAGALIRAVAPILGGGG-GGRPNMAQAGGKDTSRIPEALEKARE 874

Query: 895 FLKK 898
             K+
Sbjct: 875 IAKE 878


>gi|330839006|ref|YP_004413586.1| alanyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|329746770|gb|AEC00127.1| alanyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 874

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/912 (37%), Positives = 512/912 (56%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + +R  +L+FF +K GH  LPS+SLIP NDPTL+   +GM PFK  FTG+ KP    
Sbjct: 4   MTGNELREAYLQFFAEKKGHLRLPSASLIPANDPTLLMIGAGMAPFKPFFTGKMKPPRTR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT Q+CVR G    D++NVGRT RH T+FEMLGNFSFG YFK+ AI  AW+ LT   DL
Sbjct: 64  ITTSQRCVRTG----DIENVGRTARHQTYFEMLGNFSFGDYFKKEAIPWAWEFLTDVLDL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TVY +D+EA  +W++  G   D I+++   DNFW +   GPCGP SEI+ D G
Sbjct: 120 PKEKLWVTVYPKDDEAAAIWREQPGFPQDHIVKLD--DNFWEIGP-GPCGPDSEIYIDLG 176

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +RY+EIWNLVF QF++    +   L   +IDTG GLER+A+VLQ
Sbjct: 177 EERGCGSPDCAVGCDCDRYLEIWNLVFTQFDRTEDGQYNPLEHKNIDTGCGLERLASVLQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I+ + +V+G+ Y       V+ +VI DH RS + +I DGILP+NEG
Sbjct: 237 NKKTNFETDLLFPIIEYASKVSGVVYGENAEKDVSLKVIADHARSMAIMIMDGILPSNEG 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRRI+RRA+ + R+LG  +  +   + A+      A  + EL + K  I++ +  E
Sbjct: 297 RGYVLRRILRRAVRHGRILGIHDKFLEGAIDAVAEIYKGAADFEELAEKKEYIKKVISIE 356

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++RF  TL +G+ LL+G +  L ++  ++L G++ FKLYDT+G P ++  +IL       
Sbjct: 357 EDRFAATLAQGMELLNGHIEDLKREGKKVLPGEIGFKLYDTYGFPWEVTDEILHE-NEME 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  SF +A+EEQR RARA                                   +    D
Sbjct: 416 LDKDSFEKAMEEQRERARAARQ-----------------------------ENQRVAVPD 446

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +         N   S V AI + G +V+E   G++  ++   TPFYAE GGQ+GD G
Sbjct: 447 LSGIDTSHLCVDENAKESTVVAIWKDGVLVDELADGEEAGIILQSTPFYAEGGGQVGDAG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +  R+Q+ + +K  +G   H   VE G+L+    + + ID+  +   + NH+ATHL
Sbjct: 507 LLETEFGRVQVANAKKLPDGTVYHIGYVEEGMLKVGDHVSIRIDWMKKLSSARNHTATHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G  V+Q GS + P+ LRFD ++ +P+T+ +L+ +E  VN+ I    PV   
Sbjct: 567 LQAALKRVVGDQVNQAGSLVMPERLRFDFSNFEPVTALQLQEVERLVNEQILMAKPVEIA 626

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  + A   GA AL G KY D VRVVSV        S  LCGG+HV + GEI +  IVS
Sbjct: 627 QMEIDKAKKLGAMALFGEKYGDVVRVVSVP-----DFSIELCGGSHVKNIGEIGMFKIVS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I +G+RRIEA+TG+ A  ++  + E L + A   K     +V  +E    E +KL+ 
Sbjct: 682 ETGIASGVRRIEALTGRAAIDYMNEKAETLAAAAHAFKCRDDEIVSHIESTLAENKKLKQ 741

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A    +  + D         +I D++F S I+   +  +L+ + D L  +++SG+++L
Sbjct: 742 EIASFTKERAMGDVDTLLAQKKQIKDLSFASGIVEADNIDDLRKIADMLLDRLESGVVVL 801

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                E K S++   ++  + +  +A ++ + +AK++GGGG GGR  MAQ+GG    K  
Sbjct: 802 AAAH-EGKVSLVAKASDAAVAKGAHAGNIVKAAAKIVGGGG-GGRKEMAQAGGKEPAKMP 859

Query: 887 QAIAGVASFLKK 898
           +A+      L +
Sbjct: 860 EALQEAERVLAE 871


>gi|239637575|ref|ZP_04678547.1| alanyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596793|gb|EEQ79318.1| alanyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 876

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/914 (37%), Positives = 508/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKNEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+K+W +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDIEAYKIWNEKIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEDFGKDDPEEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I   EQV+G  Y  NN      +VI DH+R+ SF IADG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIINEVEQVSGKNYLQNNDQDVAFKVIADHIRTISFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKSDFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+G +S   + ++ +NG  AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLEEGLSILNGFISQAKEGNQEINGKDAFKLYDTYGFPIELTEELATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK     + F+GYD        
Sbjct: 414 LT-VDMTTFETEMQQQRDRARQARQNSQSMQVQSEV--LKNITTESHFVGYDTTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  ++Q GE V++A + + +  +   TPFYA +GGQ+ 
Sbjct: 467 -------------------QTELIHLIQNGEEVDKADAEETIYFMLKDTPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + +T+V K   G  +H   V+ G +     +  +++   RR +  NHSA
Sbjct: 508 DKGIVSNDHFEIAVTEVTKAPNGQNLHKGTVQFGQVNKGSEVDASVNKDERRSIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS + P+ LRFD +H   +T  E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGEHVNQAGSLVEPNRLRFDFSHFGQMTQDEINQVERRVNEEIWRGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + MN ++A A GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 RIQEMNIDEAKAMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVENTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    E+   +   +KV   + VV ++ +I +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEHIQEQFNLVKDLVKVKTDDQVVDKITQIQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +     I  +  ++  +   ++K ++S MD  + K+Q  
Sbjct: 743 SLIKQLEQRDKEITSLKMGNIEDQVETINGLKVLATEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L   + + K S++  V +D  D+  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 VIILAS-NVDDKVSIIATVPKDQTDKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              +++  +  ++K
Sbjct: 861 NITESLRFIKDYIK 874


>gi|331269730|ref|YP_004396222.1| alanyl-tRNA synthetase [Clostridium botulinum BKT015925]
 gi|329126280|gb|AEB76225.1| alanyl-tRNA synthetase [Clostridium botulinum BKT015925]
          Length = 879

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/908 (37%), Positives = 507/908 (55%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +L+FF+  GH  LPS S++P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+  T+   + 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHATFFEMLGNFSFGDYFKNEVIPWAWEFTTEVLKMP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179
           + +LY+T+Y +D+EA+ +W   + +    I R+   DNFW     GPCGPCSEI F  D 
Sbjct: 120 KDKLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDN 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE           + +R +E WNLVF QF++        L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEIKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNKLEFPNIDTGMGLERMATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++     +    Y  +    ++ R+I DH+RS S +I+D +LP+NEGR
Sbjct: 239 VETIFEVDTIKSILDKVANLANTSYGEDSVKDMSLRIITDHVRSVSVMISDEVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  ++ ++    G AYPEL + K  I++ +  E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGIQGTFLHKIVDSVVENSGDAYPELKEKKDYIKKVISIEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +  L     +IL+G+  FKLYDT+G PL++ ++IL  + +  +D+
Sbjct: 359 FSETIDSGMEILKEYIEELEKENKKILSGEKVFKLYDTYGFPLELTEEILEEKNMT-VDM 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++ QR RARA         T+            T+F GY+ L            
Sbjct: 418 DGFNKEMKVQRERARAARSESTYMGTDVKVIDTIPSEIETKFDGYNNLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       + S +K I++  +  +    G+K  +V D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------LQSQIKVIIKNDDFADCIKKGEKGIIVTDKTPFYAEMGGQIGDKGTIS 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG   ++ + +K   G  +H   V  G +     ++L +D + R  +S NHS THLLH 
Sbjct: 515 ADGFVAKVENCKKNIGGKIIHFVEVVEGSINLGNEVLLEVDKRRRDNVSKNHSTTHLLHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q+GS +  D LRFD TH + +T  EL  +ED VND+I++   V T  M 
Sbjct: 575 ALRKVLGDHVHQSGSYVDEDKLRFDFTHFEGVTQEELTKVEDLVNDVISKVYEVETNEMT 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  SGA AL   KY D+VRVV +     G  S  LCGGTH+S+ G+I L  IVSES 
Sbjct: 635 IEEARQSGAMALFDEKYGDKVRVVKM-----GNFSVELCGGTHISNIGKIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AGIRRIEA+TG +A   +  +   L+ +A  LK S+ ++V R+ +   E ++ +   A
Sbjct: 690 IAAGIRRIEAVTGTKALEFMKDKSNLLREVAEMLKCSEKDIVNRLNQQNLELKEKEKEIA 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +L          +  +I  +      + +VD + L+++ D ++ K+ SG+++L G 
Sbjct: 750 ALKSKLASGSEDEILNNIKEIKGIKLAVADLKDVDGEALRNLGDKIKNKLGSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   + + ++D++    +   + R  AK+ GGGG GGRP MAQ+GG    K   A+
Sbjct: 809 EVEGKVQFIAMASKDVVSKGVHCGTIVREIAKIAGGGG-GGRPDMAQAGGRLPEKLKDAM 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 NAVENIME 875


>gi|75906451|ref|YP_320747.1| alanyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|123745317|sp|Q3MGN4|SYA_ANAVT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|75700176|gb|ABA19852.1| alanyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
          Length = 880

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/906 (36%), Positives = 506/906 (55%), Gaps = 49/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IRT FL+F+ + GH++L S+SL+P  DPT++ T +GM+PFK IF GQ  P ++  T
Sbjct: 9   SGNEIRTRFLDFYAQRGHQILASASLVPE-DPTVLLTIAGMLPFKPIFLGQRTPEFKRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RH TFFEMLGNFSFG YFKE+AI   W++ T+ F L +
Sbjct: 68  TSQKCIRT----NDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EA+ +W+   G++  +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 124 ERLVVSVFEEDDEAYVIWRDQIGVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLER+  +LQ+  N
Sbjct: 184 -RGDENIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQQVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+ Y  ++     + +VI DH+RS   +IAD I  +N GRGY
Sbjct: 243 NYETDLIFPIIETAAKIAGIDYHSSDETTKVSLKVIGDHVRSVVHMIADEIRASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G +   +  +         SAYP + + + +I+  L  E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGISGEFINQVAERAIALSESAYPNVRKRETVIKAELEREEANFL 362

Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTLDRG  LL+ ++         I++G+ AF LYDT+G PL++ Q+I     L  +D   
Sbjct: 363 KTLDRGEKLLEEIIQQVKKQGQTIISGESAFTLYDTYGFPLELTQEIAEENNLT-VDEDD 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN  +++Q  RA+A    +   T +     L E   AT+FIGY                 
Sbjct: 422 FNVEMQKQVERAKAAHETIDL-TVQGSLDKLAEHIHATEFIGYSQ--------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V+ ++  G + EEA +G +V++V D+TPFYAE+GGQ+GD G   G 
Sbjct: 466 --------ATATAKVEVLLVDGVVQEEAEAGTEVQIVLDKTPFYAESGGQIGDRGYISG- 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +   +  KK    FVH   +ERG LR   S+   ID   RR+   NH+ATHLL  AL
Sbjct: 517 DGIVVQVEDVKKESDFFVHFGRIERGTLRVGDSVTAQIDRAGRRRAQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            TI+   +SQ GS ++ D LRFD    + +T+ E++ +E+ +N  IA+       ++   
Sbjct: 577 KTIVDGGISQAGSLVSFDRLRFDFNSPRGLTAEEIQQVEEQINTWIAEAHSAKIEVLPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY D VRV+          S  LCGGTHVS+T EI +  I+SE+ + 
Sbjct: 637 EAKARGAVAMFGEKYGDEVRVIDFPG-----VSMELCGGTHVSNTAEIGVFKIISEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  +      
Sbjct: 692 SGVRRIEAVSGLAVLDYLNVRDKVVKDLSDRFKVKPEELPERITTLQNELRTTEKQLETL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +            + D   +   +  VD + LKS  + L +KI +G ++L  + +
Sbjct: 752 KGQLAIAKSDSLLQTADTLGDHKIIVAQLEGVDPESLKSAAERLLQKIGNGAVVLGSVPE 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   + ++  +   A       AK+ GGGG GGRP++AQ+GG + +K   A+  
Sbjct: 812 ADKVSLVAAFSPEVNKKGLQAGKFIGAIAKICGGGG-GGRPNLAQAGGRDASKLPTALEQ 870

Query: 892 VASFLK 897
             S LK
Sbjct: 871 AQSELK 876


>gi|313904037|ref|ZP_07837417.1| alanyl-tRNA synthetase [Eubacterium cellulosolvens 6]
 gi|313471186|gb|EFR66508.1| alanyl-tRNA synthetase [Eubacterium cellulosolvens 6]
          Length = 897

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/915 (36%), Positives = 508/915 (55%), Gaps = 49/915 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL +F++     L S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 9   VNELREMFLSYFEEKECLRLGSFSLVPHNDNSLLIINSGMAPMKPWFTGQEIPPRKRVTT 68

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    DL+NVG+T RH TFFEMLGNFSFG YFK+ AI  AW+ LT+   LD  
Sbjct: 69  CQKCIRTG----DLENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFLTERVGLDAD 124

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +DEE++ +W     + A++I +    DNFW    +GPCGPC+EI++D+G   
Sbjct: 125 RLYPSVYVDDEESYNIWLNDMHIPAERIYKFGKEDNFWEHG-SGPCGPCTEIYYDRGPQF 183

Query: 184 PGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       EG+R++E+WN+VF QF    K     L + +IDTGMGLER+A  +QE  +
Sbjct: 184 GNGPEDVMGGEGDRFMEVWNVVFSQFNNDGKGNYTDLVQKNIDTGMGLERLAVAVQEVGS 243

Query: 243 NYDIDLFKHLIQASEQVT-GMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            +D+D  K L     ++  G+KYE      + V+ R++ DH R+ +F+I+DGI+P+N GR
Sbjct: 244 LFDVDTVKALRDLICELAGGVKYEQPGTEESDVSVRIVTDHARAMTFMISDGIMPSNNGR 303

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + R LG T   +  L   +       YPEL + +  I   +++E+++
Sbjct: 304 GYVLRRIIRRAVRHGRKLGITGSFLTKLAENVIEGSKDGYPELAEKRDFILNVIQAEEDK 363

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT ++G+ +L  +         + L+G  AFKLYDT+G PLD  ++IL   G   +D+
Sbjct: 364 FEKTYEQGMDILQSMQDALKAEGKKELSGPDAFKLYDTYGFPLDNTKEILEENGF-AVDV 422

Query: 416 ISFNQALEEQRSRARAHSLGLGS----GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             F  A++ QR  AR      G            +   +    + F+GY  L  +  +  
Sbjct: 423 AGFEAAMKNQRETAREDRKKSGKSATYMGAAATVYEDMDPAVNSAFVGYQGLEATGKIVA 482

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                      D                 + E    GQ   V+ DQTPFY   GGQ+GD 
Sbjct: 483 LAAFAADDDEDDS----------------VAEALSDGQSGAVITDQTPFYGTMGGQIGDK 526

Query: 532 GCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           G  +        +++  +  A     H   V +G+L+T   + L +D +NR  ++ NHSA
Sbjct: 527 GVIVLGDGEAVFEVSATEHVAGNKIAHIGKVVKGMLKTGDEVSLKVDAKNRLAIARNHSA 586

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+  AL  +LG+HV Q GS    D  RFD +H + +TS E++ +ED VN+ I++ L V
Sbjct: 587 THLMQKALREVLGTHVEQAGSYQDADRTRFDFSHFQAMTSEEIRKVEDMVNEKISEGLAV 646

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T++M  ++A  +GA AL G KY D VRVV +     G  S+ LCGGTHV +T +I    
Sbjct: 647 TTQVMTLDEAKKTGAMALFGEKYGDEVRVVKM-----GDFSTELCGGTHVENTQQIAQFK 701

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+SE+ + AG+RRIEA+TG   R +    + +  + A+ LK +   +   + ++ EE + 
Sbjct: 702 ILSENGVAAGVRRIEALTGDNVRRYYEKLEAQTNAAAALLKATPATLADHIRKLQEELKA 761

Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+  +   K +     L     +  +I  V F++  +S VD  EL+++ D L+ K+  G+
Sbjct: 762 LKSENEALKSKEAQNALGDVMNNIKEINGVPFLATAVSGVDMNELRNLGDELKAKVAGGV 821

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++LV    + K +++ + T++ + +  +A ++ + SAK++GGGG GGRP+MAQ+GG + +
Sbjct: 822 VLLVS-DNDGKVNMMCMATDEAMKKGAHAGNIIKASAKIVGGGG-GGRPNMAQAGGKDAS 879

Query: 884 KADQAIAGVASFLKK 898
               AIA     L +
Sbjct: 880 GIPAAIAEAEKVLAE 894


>gi|149924852|ref|ZP_01913189.1| alanyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
 gi|149814267|gb|EDM73872.1| alanyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
          Length = 919

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/925 (36%), Positives = 500/925 (54%), Gaps = 51/925 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+ FL FF++ GH  +PSS L+P +DPTL+F N+GMV FK++FTG++K  Y   T+ Q+
Sbjct: 10  IRSAFLSFFEERGHAAVPSSPLVPFDDPTLLFVNAGMVQFKDVFTGRDKRDYTRATSAQR 69

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDLDNVG T RHHT FEMLGNFSFG YFK  AI+  W+ LT+  +L   +L 
Sbjct: 70  CLRAGGKHNDLDNVGFTPRHHTLFEMLGNFSFGDYFKRDAIRWGWEFLTQVLELPAEKLV 129

Query: 127 ITVYDE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++V++        D+EA+ LW +I  +  ++I      +NFW M +TGPCGPCSEI   +
Sbjct: 130 VSVFNGEGENAPFDQEAYDLWAEI--IPKERIYAFDAKENFWQMGDTGPCGPCSEIHIWR 187

Query: 180 GE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           GE            G + E ++Y+E+WNLVFMQ+E+    E   LP  S+DTG GLER+A
Sbjct: 188 GEGGAPPDGGKPGKGPAFEDDKYMELWNLVFMQYEKLASGEMTKLPAPSVDTGAGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPA 293
            VL+    NY+  LF  ++   + + G+         ++RVI DH R+++FLIADG+ P 
Sbjct: 248 AVLEGVETNYETGLFVPIVDKVKALAGVSGHQGEREASYRVIADHARATAFLIADGVTPD 307

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
             GR YVLRRIMRRA+ +A L+G  +     +   +    G AYPEL +A+ +I   ++ 
Sbjct: 308 QTGRPYVLRRIMRRAIRHATLVGLEDLFFHEVCDEVVNRFGEAYPELREAREVIAGAVKI 367

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E F +TL RGL  +  +L+       ++   D A  LY + G P+D+ + I     L 
Sbjct: 368 EEEGFRRTLARGLRRVSKILAGLEAEGSKVFPVDEAADLYTSAGFPIDLTRVIAEENELT 427

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLLRGSKFMK 470
             +     +   ++   + A   G G      ++F +  + G  T F+GY    G   +K
Sbjct: 428 LDEAAVAEKLEAQKGESSFA---GGGGSKVADVYFDIVNELGQGTAFLGYGATAGEATLK 484

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                  +    +     +            VE A +GQ VE++FDQ+PFY E+GGQ+GD
Sbjct: 485 AIVIPAPEPAEGEPALEPT-----------RVESAQAGQAVELIFDQSPFYGESGGQVGD 533

Query: 531 TGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           TG          + +T   K   G+ VHH  +  G +      VL +D   R  +  NHS
Sbjct: 534 TGALRAVDGGAVVTVTQTSKPTGGLHVHHGELAGGSIAVGQRFVLEVDVARRDAIRRNHS 593

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LHHAL  +LG HV+Q GS + PD LRFD +H++ +T  E + IE  VN ++  N P
Sbjct: 594 ATHMLHHALRKVLGKHVAQKGSLVAPDRLRFDFSHARSVTREETRRIEAEVNAMVLANAP 653

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSALCGGTHVSSTGEI 705
             T  M+  DA  +GA  L G KY   VRVV++   +   G   S  LCGGTHV+  G++
Sbjct: 654 TGTAEMSLADAKQAGAIGLFGEKYGAEVRVVTIGEVETEAGEERSVELCGGTHVARAGDV 713

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IV+E  +  G+RRIEA+TG  A   +  + E +  +AS L+    G V+GR+E++ 
Sbjct: 714 GLFKIVAEGGVAQGVRRIEAMTGMGAVEWVQERAEVVDQVASDLRARDLGEVLGRLEKLH 773

Query: 765 EEYRKLQLIHAKRKLQLN-----VEDLSCHKIAD----VNFMSHIISEVDSKELKSVMDA 815
           EE           K +L       +     ++      V   +  I   D K ++   D 
Sbjct: 774 EELAARGREIDSLKRKLATGGGGSQASEVVEVEGGGKTVKLTARRIPVADPKIMREAADT 833

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPH 873
           L+ ++ SG+++L G  ++ KA++L+  T+DL      +A  LA      +  G GGGRP 
Sbjct: 834 LRDRMGSGVVVLAG-ERDGKANLLVATTKDLAKGKIVHAGKLAAALVVHV-DGRGGGRPD 891

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
           MAQ+GGP     D  +A  A  L K
Sbjct: 892 MAQAGGPKVAGLDDVVAHAAEELAK 916


>gi|193214313|ref|YP_001995512.1| alanyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|193087790|gb|ACF13065.1| alanyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 887

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/923 (37%), Positives = 506/923 (54%), Gaps = 69/923 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF    HE++ S+ +IP +DPTL+FTN+GM  FK++F G     Y   
Sbjct: 1   MTSKEIRQAFLDFFTSKQHEIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGIGSRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAITWAWELLTDVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +D+EAF+LWK  + ++A  I R    DNFW M ETGPCGPCSEI  D   
Sbjct: 121 KDRLYATVYKDDDEAFELWKSETDIAASHIQRHGEKDNFWEMGETGPCGPCSEIHIDLTP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G     +      IEIWNLVF+Q+ +    +   LP   +DTGMG ER+A VLQ KT
Sbjct: 181 DKSGAA-LVNAGRPEVIEIWNLVFIQYNRDAAGKLHPLPAKHVDTGMGFERIAAVLQGKT 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F  +++    +TG  Y    E +  +  RV+ DH+R+ +F IADG  P+NEGR
Sbjct: 240 SNYDSDVFTPILKKIGDITGKTYGGSMESDTDMAMRVLADHIRTLAFAIADGGTPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RR + YAR LG  EP +  L   LC  MG  +PEL++ + +IE+ +++E+E 
Sbjct: 300 GYVLRRILRRGVRYARQLGQNEPTLYKLTEVLCETMGDVFPELVERRQVIEQVIKAEEES 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRG+ + +GV   L K   ++++G  AFKLYDT+G PLD+ + +    GL+ +D 
Sbjct: 360 FLQTLDRGIEIFNGVTEKLKKSGGKVIDGADAFKLYDTYGFPLDLTRLMAEEIGLS-VDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++EQ+ RAR       +   E   +++  +   T+F GY+ L     +   +K 
Sbjct: 419 DGFLANMKEQKDRARKDRKEKSAVAEESGEWTIFAETLKTEFSGYETLEQKSRIARAKK- 477

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                          +G+K+ +V ++TPFYAE+GGQ GD+G   
Sbjct: 478 -------------------------------AGEKLLLVLEKTPFYAESGGQQGDSGEIE 506

Query: 536 GDGIRLQITDVQKKAEGIFVHH-------------AIVERGILRTEMSLVLTIDYQNRRQ 582
            D     I+D QK+ + +                          + +     ++ + R  
Sbjct: 507 TDAFSFHISDTQKEGDLVLHIVDKITDKESGDAVAIENFDLEKLSSLEADAKVNAETRGA 566

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NH+ATHLLH AL  +LG HV Q GS + P+ LRFD +H + ++   +  IE  VN  
Sbjct: 567 TARNHTATHLLHEALREVLGEHVQQKGSLVGPERLRFDFSHFERVSEEAMAQIEQIVNAQ 626

Query: 643 IAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I     V     +  EDA   GA A  G KY D VRVV V       +S   CGGTH+ +
Sbjct: 627 IRMAKAVKKHADVPFEDAKKMGALAFFGDKYGDFVRVVEVPG-----YSVEFCGGTHLDN 681

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRV 760
            GEI LL IVSESSI +GIRR+EA+TG+ A         KL++L   L     + V+ RV
Sbjct: 682 IGEIGLLKIVSESSIASGIRRVEAVTGKVAEDLFRSDRRKLQALRDTLSAQSEDAVLERV 741

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           ++I EE ++L+    K +L+L    L     +   +  V  ++  +    + ELK + + 
Sbjct: 742 QKILEEKKELEKEVEKLRLELAASALDGLVKNAETLNGVKILAAEVKVSGADELKQLGEM 801

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPH 873
            + K+ SG+++L     E KAS++  V++D++   +  A  L    AKV+ GGG GGRP+
Sbjct: 802 ARSKLGSGVLLLGAALGE-KASLVAAVSDDVIKSHKLQAGKLVGEVAKVVKGGG-GGRPN 859

Query: 874 MAQSGGPNGNKADQAIAGVASFL 896
           +A +GG +  K  +AI      +
Sbjct: 860 LATAGGKDPQKLSEAIEKFKEIV 882


>gi|182625718|ref|ZP_02953487.1| alanyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177909120|gb|EDT71595.1| alanyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 879

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/908 (36%), Positives = 517/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +
Sbjct: 4   MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE
Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                      + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q 
Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGR
Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKVIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +DI
Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDI 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +FN+ ++EQR RAR          +E+   +  +    T+F GY  L            
Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNIT 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH 
Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M+
Sbjct: 575 ALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES 
Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++     A
Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L             +I  V  ++  + +VD   L+ + D ++ K+ +GI++L   
Sbjct: 750 ELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS- 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K +++ + T++ L +  +   + +  A V+GGGG GGRP MAQ+GG N     +A+
Sbjct: 809 DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867

Query: 890 AGVASFLK 897
                 ++
Sbjct: 868 EKAKEVVE 875


>gi|110799076|ref|YP_696466.1| alanyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|168211405|ref|ZP_02637030.1| alanyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|123148653|sp|Q0TPH4|SYA_CLOP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110673723|gb|ABG82710.1| alanyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|170710656|gb|EDT22838.1| alanyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
          Length = 879

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/908 (36%), Positives = 517/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +
Sbjct: 4   MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE
Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                      + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q 
Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGR
Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +DI
Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDI 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +FN+ ++EQR RAR          +E+   +  +    T+F GY  L            
Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------LNSKVIVLGNNEEFKSELKEGEEGFLLTDKTPFYAEMGGQVGDRGNIT 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH 
Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M+
Sbjct: 575 ALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES 
Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++     A
Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L             +I  V  ++  + +VD   L+ + D ++ K+ +GI++L   
Sbjct: 750 ELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS- 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K +++ + T++ L +  +   + +  A V+GGGG GGRP MAQ+GG N     +A+
Sbjct: 809 DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867

Query: 890 AGVASFLK 897
                 ++
Sbjct: 868 EKAKEVVE 875


>gi|18310762|ref|NP_562696.1| alanyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|168218241|ref|ZP_02643866.1| alanyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|20532247|sp|Q8XJH6|SYA_CLOPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|18145443|dbj|BAB81486.1| alanine-tRNA ligase [Clostridium perfringens str. 13]
 gi|182379737|gb|EDT77216.1| alanyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 879

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/908 (36%), Positives = 517/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +
Sbjct: 4   MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE
Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                      + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q 
Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGR
Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +DI
Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDI 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +FN+ ++EQR RAR          +E+   +  +    T+F GY  L            
Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNIT 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH 
Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M+
Sbjct: 575 ALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES 
Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++     A
Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L             +I  V  ++  + +VD   L+ + D ++ K+ +GI++L   
Sbjct: 750 ELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS- 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K +++ + T++ L +  +   + +  A V+GGGG GGRP MAQ+GG N     +A+
Sbjct: 809 DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867

Query: 890 AGVASFLK 897
                 ++
Sbjct: 868 EKAKEVVE 875


>gi|330684847|gb|EGG96537.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 876

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/914 (36%), Positives = 508/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKNEAIEFAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+K+W +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDVEAYKIWNEKIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGADFGKDDPEEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I   EQV+G  Y    +  V  +VI DH+R+ SF IADG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIINEVEQVSGKTYLQNIDQDVAFKVIADHIRTISFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVAEIMEPYYPNVKEKSEFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+G +S   + ++ +NG  AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLEEGLAILNGFISQAKEGNQEINGKDAFKLYDTYGFPIELTEELATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK     + F+GY+        
Sbjct: 414 LT-VDMTTFEAEMQQQRDRARQARQNSQSMQVQSEV--LKNITTESHFVGYNTTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  ++Q GE V++A +G+ +  +   TPFYA +GGQ+ 
Sbjct: 467 -------------------QTELIHLIQNGEEVDKADTGETIYFMLKDTPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + +T+V K   G  +H   ++ G +     +  +++   RR +  NHSA
Sbjct: 508 DKGTVSNDHFEIAVTEVTKAPNGQNLHKGTIQFGQVTKGAEVDASVNKDERRSIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS + P+ LRFD +H   +T  E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVEPNRLRFDFSHFGQMTQDEINQVERRVNEEIWRGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + MN ++A A GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 RIQEMNIDEAKAMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVENTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    E+   +   +KV   + VV ++ +I +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEHIQEQFNLVKDLVKVKTDDQVVDKITQIQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +     I  +  ++  +   ++K ++S MD  + K+Q  
Sbjct: 743 SLIKQLEQRDKEITSLKMGNIEEQVETINGLKVLATEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L   + + K S++  V +D  D+  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 VIILAS-NVDGKVSIIATVPKDQTDKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              +++  +  ++K
Sbjct: 861 NITESLRFIKDYIK 874


>gi|288819149|ref|YP_003433497.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288788549|dbj|BAI70296.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752733|gb|ADO46216.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 871

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/904 (38%), Positives = 520/904 (57%), Gaps = 49/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL FF+K GH  + S+ L+P +DPTL+F N+GMVPFKN+F G EK  Y  
Sbjct: 1   MFSTDEIRELFLSFFEKKGHVRVRSAPLVPESDPTLLFVNAGMVPFKNVFLGIEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKC+R  GKHNDL++VG T+RHHTFFEMLGNFSFG YFK++AI+ AW+ +T+   L
Sbjct: 61  AVSCQKCLRVSGKHNDLESVGYTSRHHTFFEMLGNFSFGDYFKKQAIEYAWEFITQYLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LYITV++EDEE +++W+   GL   +I +    DNFW M +TGPCGP SEI FD+G
Sbjct: 121 PEDKLYITVFEEDEETYRIWRDDIGLEEGRIWKRGEEDNFWQMGDTGPCGPSSEIHFDKG 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E   G           Y+E+WNLVFMQ+ +  K     LPK +IDTGMGLER+A+VLQ+ 
Sbjct: 181 EGEEGER---------YLEVWNLVFMQYNRDEKGNLTPLPKPNIDTGMGLERIASVLQKT 231

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             NY+ID+ + L+   E+++  +Y       V  RVI DHLR+ +F I+DG+LP+N GRG
Sbjct: 232 KTNYEIDIIRPLVAFGEELSQKRYGESFEVDVALRVIADHLRAITFAISDGVLPSNVGRG 291

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YV+RRI+RRA+ YA  LG  EP +   +  +   M  AYPEL  +   ++  ++ E+E+F
Sbjct: 292 YVIRRILRRALRYAYKLGVQEPFLYRGIDLVVDIMKRAYPELETSIGFVKSVVKGEEEKF 351

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             TL   + +++ ++          ++G   F LYDT+G PLD+++DI   +GL  +D+ 
Sbjct: 352 INTLKNAMPVVEEIIHKTLEEGRSSISGAQVFTLYDTYGFPLDMLEDIAREKGLY-VDMK 410

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + +E QR +AR     + S   + I+  LKE    +QF+GYD  +            
Sbjct: 411 GFEEQMELQREKARK-HFKITSKEVKPIYAHLKELGKTSQFVGYDQYQ------------ 457

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V AI++ G++V E   G++ E+V ++TPFYAE GGQ+GD G   G
Sbjct: 458 -----------AETKVIAIIKDGQMVSELKEGEEGELVLEKTPFYAERGGQVGDKGFIRG 506

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G    + D Q   EG+  H   + +G L+    +   ID + R  +  NH+ATHLLH  
Sbjct: 507 EGAYFMVEDTQSPVEGVITHIGKLIKGSLKVMDQVHAIIDRERREDIRRNHTATHLLHAV 566

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS ++   LRFD TH + +    L  IE+ VN+ I QN  V     + 
Sbjct: 567 LRHVLGDHVRQAGSLVSDQYLRFDFTHYEALDWDRLSRIEELVNEHIRQNYEVSVEETDY 626

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
             AI  GA A+   KY+DRVRV++V     G  S  LCGGTHV  TG+I    IVSESS+
Sbjct: 627 TKAIKEGAIAIFEEKYSDRVRVITV-----GEVSKELCGGTHVRRTGDIGYFKIVSESSV 681

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRI A TG+ A      +   L+ L+  L V Q ++   ++ +  + ++ +   A+
Sbjct: 682 GAGVRRIVAKTGRWAVEDAFREHRMLQELSISLGVKQEDIPDAIQRLERQLKEKEKEVAR 741

Query: 777 RK----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            K     Q+  + L    I  +        ++D+++L++  D ++   ++ ++  +   K
Sbjct: 742 LKELLLEQMVQKQLKEELINGIRLYWGFFEDIDTEDLRNTADRIRSSSENCVVFFI-TKK 800

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            ++ S L+ ++++L+ + +A ++ +   KVLGGGG GGR  +AQ GG N     +AI  +
Sbjct: 801 GERLSTLLALSKNLVPKLSAKEMIKEVGKVLGGGG-GGREDLAQGGGTNLQAVGKAIERL 859

Query: 893 ASFL 896
              +
Sbjct: 860 KDLI 863


>gi|313893025|ref|ZP_07826602.1| alanine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442378|gb|EFR60793.1| alanine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 871

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/903 (36%), Positives = 494/903 (54%), Gaps = 55/903 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF+  GH  L + SLIP NDP+L+   +GM P K  FTG+  P  + +
Sbjct: 1   MKGNELRQAYLQFFESKGHLKLDTFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q C+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD
Sbjct: 61  TTSQTCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA+  W K  G+    I R+   DNFW + E GPCGP SEIFFDQG 
Sbjct: 117 KNRLYVTVYPDDQEAYDTWHKDCGVEESHISRL--EDNFWEIGE-GPCGPDSEIFFDQGP 173

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ 
Sbjct: 174 EHGCDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQG 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N++ DL   +I+A+ +  G+ Y    N  V+ +VI DH R+ + LI+DG+LP+NEGR
Sbjct: 234 CRTNFETDLIYPIIEATAKRAGVTYNENPNTDVSLKVIADHARAVTALISDGVLPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + RLLG     +  L+  +   +G     + + K  ++  +++E+ER
Sbjct: 294 GYVLRRILRRAVRHGRLLGIEGIFLTPLVDVVVEILGPGIKSIAEKKDFVKRVVQNEEER 353

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID 
Sbjct: 354 FNQTLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDH 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A++EQR RAR   +   +         LK++         +LL            
Sbjct: 413 EGFEAAMKEQRERAREARVKEDAKVATPDITFLKDE---------ELLEDESVKA----- 458

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  + +  + ++ A  G ++ ++   TPF+AE GGQLGDTG  +
Sbjct: 459 --------------SSVLMVGKGAKRLQTAADGDEITIIVRTTPFHAEGGGQLGDTGFIV 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G   ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH 
Sbjct: 505 GPMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVALEVDTNRRSAMARNHTATHLLHA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ + +   +    M+
Sbjct: 565 ALKQILGDHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEVLKATDLAIAEMS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A   GA AL G KY D VRVV V        S  LCGG+HV +T  +    + SE+ 
Sbjct: 625 MDEAKEKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFVGSFRLTSEAG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRIEAITG+ A          ++ +A  LK     V  R+ ++  E ++      
Sbjct: 680 IGSGVRRIEAITGRAALDAAKQDRLTIERMAGELKTKAPQVEERLHQVLAEAKETAKELE 739

Query: 776 KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829
           + + +++    +        I DV F++  +      EL+ + D    ++  SG++++  
Sbjct: 740 QIRKEVSAAGAADIIAGKVMIGDVAFVAAAVKASSIDELRDLADMGLDQLNGSGVVLVGA 799

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K  QA
Sbjct: 800 AMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMQA 858

Query: 889 IAG 891
           +  
Sbjct: 859 LKA 861


>gi|17229910|ref|NP_486458.1| alanyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|20532251|sp|Q8YUD4|SYA_ANASP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|17131510|dbj|BAB74117.1| alanyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 880

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/906 (36%), Positives = 502/906 (55%), Gaps = 49/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IRT FL+F+ + GH++L S+SL+P  DPT++ T +GM+PFK IF GQ  P ++  T
Sbjct: 9   SGNEIRTRFLDFYAQRGHQILASASLVPE-DPTVLLTIAGMLPFKPIFLGQRTPEFKRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RH TFFEMLGNFSFG YFKE+AI   W++ T+ F L +
Sbjct: 68  TSQKCIRT----NDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EA+ +W+   G++  +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 124 ERLVVSVFEEDDEAYAIWRDQIGVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLER+  +LQ   N
Sbjct: 184 -RGDDNIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQRVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+ Y  ++     + +VI DH+RS   +IAD I  +N GRGY
Sbjct: 243 NYETDLIFPIIETAAKIAGIDYHSSDESTKVSLKVIGDHVRSVVHMIADEIRASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G +   +  +         SAYP + Q + +I+  L  E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGISGEFINQVAETAIALSESAYPNVRQRETVIKAELEREEANFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTLDRG  LL  +++ + K    +++G  AF LYDTHG PL++ Q+I     L  +D+  
Sbjct: 363 KTLDRGEKLLAEIIAEVKKQGKTVISGKDAFTLYDTHGFPLELTQEIAEENNLT-VDVEG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + +E Q+   R     +   T +     L E   AT+FIGY                 
Sbjct: 422 FQKQMEIQQQGGRGAHETIDL-TVQGSLDKLAEHIHATEFIGYSQ--------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V+ ++  G + EEA +G +V++V D+TPFYAE+GGQ+GD G   G 
Sbjct: 466 --------ATATAKVEVLLVDGVVQEEAEAGTEVQIVLDETPFYAESGGQIGDRGYISG- 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +   +  KK    FVH   +ERG LR   ++   ID   RR+   NH+ATHLL  AL
Sbjct: 517 DGIVVQVEDVKKESDFFVHFGRIERGTLRVGDNVTAQIDRAGRRRAQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            TI+   +SQ GS ++ D LRFD    + +T  E++ +E+ +N  IA+       ++   
Sbjct: 577 KTIVDGGISQAGSLVSFDRLRFDFNSPRGLTVEEIQQVEEQINTWIAEAHSAKIELLPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY D VRV+          S  LCGGTHVS+T EI +  I+SE+ + 
Sbjct: 637 EAKARGAVAMFGEKYGDEVRVIDFPG-----VSMELCGGTHVSNTAEIGVFKIISEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  +      
Sbjct: 692 SGVRRIEAVSGLAVLDYLNVRDKVVKDLSDRFKVKPEELPERITTLQNELRTTEKQLETL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +              D   +   +  VD + LKS  + L +KI +G ++L  + +
Sbjct: 752 KGQLAIAKSDSLLQTADTCGDYKIIVAQLEGVDPESLKSAAERLLQKIGNGAVVLGSVPE 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   + ++  +   A       AK+ GGGG GGRP++AQ+GG + +K   A+  
Sbjct: 812 ADKVSLVAAFSPEVNKKGLQAGKFIGAIAKICGGGG-GGRPNLAQAGGRDASKLPAALEQ 870

Query: 892 VASFLK 897
             S LK
Sbjct: 871 AQSELK 876


>gi|110802307|ref|YP_699065.1| alanyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|122956614|sp|Q0SS42|SYA_CLOPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110682808|gb|ABG86178.1| alanine--tRNA ligase [Clostridium perfringens SM101]
          Length = 879

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/908 (37%), Positives = 517/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +
Sbjct: 4   MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE
Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                      + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q 
Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGR
Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +DI
Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDI 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +FN+ ++EQR RAR          +E+   +  +    T+F GY  L            
Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNIT 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH 
Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M+
Sbjct: 575 ALKEILGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES 
Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++     A
Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L             +I  V  ++  + +VD   L+ + D ++ K+ +GI++L   
Sbjct: 750 ELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS- 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K +++ + T++ L +  +   + +  A V+GGGG GGRP MAQ+GG N     +A+
Sbjct: 809 DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867

Query: 890 AGVASFLK 897
                 ++
Sbjct: 868 EKAKEVVE 875


>gi|168207852|ref|ZP_02633857.1| alanyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170660832|gb|EDT13515.1| alanyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
          Length = 879

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/908 (36%), Positives = 517/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +
Sbjct: 4   MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE
Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                      + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q 
Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGR
Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +DI
Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDI 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +FN+ ++EQR RAR          +E+   +  +    T+F GY  L            
Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNIT 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH 
Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M+
Sbjct: 575 ALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES 
Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++     A
Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L             +I  V  ++  + +VD   L+ + D ++ K+ +GI++L   
Sbjct: 750 ELKAKLVQGAEDDILKDKIEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLASG 809

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K +++ + T++ L +  +   + +  A V+GGGG GGRP MAQ+GG N     +A+
Sbjct: 810 -NGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867

Query: 890 AGVASFLK 897
                 ++
Sbjct: 868 EKAKEVVE 875


>gi|315640863|ref|ZP_07895962.1| alanine--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315483402|gb|EFU73899.1| alanine--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 880

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/917 (35%), Positives = 497/917 (54%), Gaps = 61/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQVRQLFLDFFRSKGHTVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFKE AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKEDAIHFAWEFLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL+ + II I   DNFW +   GP GP SEIF
Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWSEEIGLTPEHIIEI--EDNFWDIG-AGPSGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G                 E ERY+EIWNLVF +F  +       LP  +IDTGMGLE
Sbjct: 174 YDRGPEYLDIAEDDPENFPGGENERYLEIWNLVFSEFNHKPDNTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT---GMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q    N++ DLF  +I + E+++            V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSIIQNAPTNFETDLFLPIIHSVEELSQGVHYGDSLQTDVSFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE+++ +  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGQKLGIQQAFLYKLVPVVGHIMESYYPEVLKQQAFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+          L G   FKLYDT+G P+++ +++  
Sbjct: 354 KVVRNEEERFHETINEGLAILNEVIEDVKANNRTTLAGQAIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D + F + ++ QR RARA      S   +     L +    + ++GY  L   
Sbjct: 414 DAGLK-VDHVGFEKEMQAQRDRARAGRSKEQSMGVQSTL--LTDIKVESDYVGYSDLE-- 468

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+     V++   G   +++F +TPFYAE GG
Sbjct: 469 ---------------------AKSALVLIISDDAFVKKIDEG-SAQLIFAKTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ DTG  +     +       KKA      H +  +G L       L ++     +   
Sbjct: 507 QVADTGIVVNSEGMIVADVTNVKKAPNGQFLHTVTVKGQLIEGTEYFLQVNTAKHNKTIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATH+LH AL  +LGSH +Q GS + P+ LRFD TH   +T  EL  +E  VN+ I +
Sbjct: 567 NHTATHMLHKALKEVLGSHANQAGSLVAPEHLRFDFTHFGQVTPEELVKMEQIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LPVVT   + + A A GA AL G KY   VRVV++        S  LCGG HV +T +I
Sbjct: 627 ALPVVTVETDIDSAKAMGAMALFGEKYGHDVRVVNIA-----DWSIELCGGNHVKNTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IVSES I AG+RRIEA+T + A      Q+E+LK +AS +K  Q   VV +V+++ 
Sbjct: 682 GLFKIVSESGIGAGVRRIEAVTSKEAYLLAREQEEQLKQVASLVKSPQLKEVVSKVDQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ ++ Q  +     +L  +  S       ++  V +++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLKEAQKENDTLSTKLANQQASDIFTDIKEVNGVTYVASQVNVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L   + EK   ++ +  + +   + A +L +  A  +GGGG GGRP MAQ+GG
Sbjct: 802 AISDVLVLATAADEKVNLLVAMSEQAIQKGYKAGELVKAIAPKVGGGG-GGRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V+ +L
Sbjct: 861 KNPAGIPDALAAVSEWL 877


>gi|300854401|ref|YP_003779385.1| alanyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300434516|gb|ADK14283.1| alanyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 879

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/908 (37%), Positives = 516/908 (56%), Gaps = 50/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+K GH  +PS SL+P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNQIREMYLSFFEKKGHLRMPSFSLVPNNDKSLLLINAGMAPLKPYFTGLKVPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFKE  I  AW+  T    + + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEVIPWAWEFTTDVLKIPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y +D+EA+ +W K + +   +I R+   DNFW     GPCGPCSEI +D+GE  
Sbjct: 122 KLYVTIYLDDDEAYDIWVKKTDIDPSRIFRLGKEDNFWEHG-AGPCGPCSEIHYDRGEGK 180

Query: 184 --PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                    + + +R +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q K 
Sbjct: 181 ITTVDEFVKAGDSDRVVEFWNLVFTQFDKDEEGNYNKLSHPNIDTGMGLERMATIMQGKN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +++D    +++    + G++Y  N    ++ R+I DH+RS +F+I+DGILP+NEGRGY
Sbjct: 241 SIFEVDTINSILKEVSNMAGIEYSKNEKSDMSMRIITDHVRSVTFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + + LG  E  +  L   +       YPEL + +  I++ ++ E+ERF 
Sbjct: 301 VLRRLLRRAAKHGKSLGIKEGFLYKLTEVVINNSCGNYPELKEKEEYIKKIIKLEEERFD 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D G+ +L+  +S L   K+ +L G+ AFKLYDT+G P+++ Q+IL  +G+  +D+  
Sbjct: 361 ETIDSGMQILNDFISDLKSNKNTVLEGEKAFKLYDTYGFPIELTQEILEEKGMT-VDLDE 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FNQ +++QR RAR+          E    +       T F GYD L+             
Sbjct: 420 FNQNMKDQRERARSARAETNYMGAENTVLNKIPFEINTVFEGYDRLKS------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      SS VK IV+  E V     G++  ++   TPFYAE GGQ+GD G    +
Sbjct: 468 -----------SSKVKLIVKDEEFVSVLNEGEEGVIITANTPFYAEMGGQVGDKGTVFSE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             + ++ D +K   G  +H   V  G +  E ++ L++D   R  +  NH+ATHLL  AL
Sbjct: 517 NFKGEVLDCKKNLAGKVLHFVKVISGSINLEDTIELSVDEDRRSNIRKNHTATHLLDSAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG  V Q+GS +    LRFD  H + ++  +L++IE+ VN+ I +  PV T IM+ E
Sbjct: 577 KQVLGEQVHQSGSYVDESRLRFDFNHFEAVSYEKLRNIENLVNESIMKVYPVKTTIMSLE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  SGA AL   KY D VRVVSV     G  S  LCGGTHVS++GEI L  I SE+ I 
Sbjct: 637 EAKESGAIALFDNKYKDEVRVVSV-----GNFSKELCGGTHVSNSGEIGLFKITSETGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+TG+ A  ++  + + L+ ++S LK S+  +V +++ +     K      + 
Sbjct: 692 AGIRRIEAVTGKMAAEYVNSKSDILREISSKLKCSEKEIVHKLD-LQSSELKELEKEIEE 750

Query: 778 KLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
                          S  KI  ++  + I+ +VD   L+ + D ++ K ++  ++L+G S
Sbjct: 751 LKLKVAGSAEDDILKSVEKIGGIDLFTGILKDVDGNSLRELADKIRSKSEN-CVVLLGSS 809

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K  ++ + T++ +    +   + +  A + GGGG GGRP MAQ+GG   +K  +AI 
Sbjct: 810 IGGKVQLVAMATKEAVKSGIHCGKIIKEVAAITGGGG-GGRPDMAQAGGRLPDKLQEAIG 868

Query: 891 GVASFLKK 898
              + + K
Sbjct: 869 KSNTIITK 876


>gi|326800500|ref|YP_004318319.1| alanyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326551264|gb|ADZ79649.1| alanyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 871

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/917 (35%), Positives = 485/917 (52%), Gaps = 69/917 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL FF+  GHE++PS+ ++  NDPTLMFTN+GM  FK +F G+    Y  V
Sbjct: 1   MTSREIRQAFLNFFKSKGHEIVPSAPIVVKNDPTLMFTNAGMNQFKELFLGEAPIKYSRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT  + +D
Sbjct: 61  VDTQRCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTNVYKID 120

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++        ED EA+  WK+   + + +I++    DNFW M ETGPCGPCS
Sbjct: 121 KDRLYVTVFEGDSEEGLPEDAEAYGYWKE--HIDSTRILKGNKKDNFWEMGETGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + IEIWN VFMQF +        LP   +DTGMG
Sbjct: 179 EIHVDCRSDEERRMIDGSTLVNADHPQVIEIWNNVFMQFNRLKDGSLQPLPAKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+  VLQ KT+NYD D+F+ LIQ   +   ++Y       +  RV+ DH+R+ SF IA
Sbjct: 239 FERLVRVLQSKTSNYDTDIFQPLIQLIAKAAKVQYGENEQQDIAMRVMADHIRAISFAIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L + EP +  L+  L  +    + EL + +  
Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNFKEPFLNTLVIPLAQQFEGVFDELYKQQDF 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +++ +  E+  F +TL  G+   +   +      +++GD AF+LYDT+G P+D+   +  
Sbjct: 359 VQKVVLEEELSFLRTLVTGIQRFESYHTD---QGLVSGDFAFELYDTYGFPIDLTDLMAR 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G   +D+  F  AL +Q+ R+RA          +   +    + G T F+GYD L   
Sbjct: 416 EKGWK-VDMPGFENALNKQKERSRAA------TAIDTGDWVTVNEDGETHFVGYDNLATE 468

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             + + RKV                             A    + ++V  QTPFYAE GG
Sbjct: 469 TKILKYRKV----------------------------SAKGKIQYQLVLSQTPFYAEGGG 500

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GDTG  I +  +  I  V  K E   + H   +      E      +    RR +  N
Sbjct: 501 QVGDTGILIHETSKETIQIVDTKKENGLIIH-FSDELPSHLEGVFFAKVAEDRRRDIQSN 559

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG HV+Q GS ++ + LRFD +H   ++  EL+ +E  VN  I +N
Sbjct: 560 HSATHLLHAALKQVLGEHVNQKGSLVSEEVLRFDFSHFAKVSDEELRRVEQVVNAKIREN 619

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           L +   R +   DAI  G  AL G KY D VRV+  +       S  LCGGTHV  TG I
Sbjct: 620 LALDERRNVPYNDAIDMGVTALFGEKYGDFVRVIIFDEN----FSKELCGGTHVQYTGNI 675

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I+SE ++ AG+RRIEAITG+RA   +  QDE +  L + LK    ++   +  + +
Sbjct: 676 GFFKILSEGAVAAGVRRIEAITGRRAEEIIDRQDELINELKNLLK-HPKDLSAAITGLLQ 734

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E  KL+    K  ++   +           I  V F+   +   ++  +K++  A++K I
Sbjct: 735 ENSKLKKEVEKSLVEKAQQLRQVLVEKAIDINGVRFIGEQVELPNADAVKNLAFAIKKAI 794

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +G+ +++    + K ++ +V+++DL++R  +A  + R  AK + GG GGG+P  A +GG
Sbjct: 795 DNGLFLVLAADFDGKPNLTVVLSDDLVNRGLDAGKIVRELAKEIKGG-GGGQPFYATAGG 853

Query: 880 PNGNKADQAIAGVASFL 896
            + +    A+    SF+
Sbjct: 854 KDSSGLTVALEKAKSFV 870


>gi|41018232|sp|Q8FT23|SYA_COREF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 890

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/923 (35%), Positives = 494/923 (53%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F   F   GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVE 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              + LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGYGLDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228
           I++D+G    G   G + +  RY+EIWNLVFM+FE+       + +    LPK +IDTGM
Sbjct: 176 IYYDRGPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ   N Y+ DL + +I  +E +TG  Y  +N   +  RVI DH R+   LI
Sbjct: 235 GVERVACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+ + +  
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F KTL  G  L +   +         + G  AF L+DT+G P+D+  ++
Sbjct: 355 ILRVAITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D+  F   + EQRSRA+A S     G  +   +        T F G++ L 
Sbjct: 415 AAEAGLE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELE 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+
Sbjct: 474 S-----------------------QSRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAES 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQLGD G  +     + I DVQK  + ++VH A+V  G L     +V  +D Q R    
Sbjct: 511 GGQLGDRGRILMGDTVVDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATHL+H AL  +LG    Q GS   P  LRFD  ++  +T  +L  I+   N+ + 
Sbjct: 571 QAHTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +
Sbjct: 631 TDWAVNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + ++ ESSI +G+RRIEA +G  + ++L  +    +SL+S LK    ++  R+ ++ 
Sbjct: 687 IGPVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLL 746

Query: 765 EEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
           ++ +  +   A   +R+L    E+      +I  +  +   +   +D+ +L+++   L+ 
Sbjct: 747 DKLKAAEKEIATLHRRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRD 806

Query: 819 KI--QSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           K+    G++++   S++  K   +   T+  + R  ++ +L +L    +  G GGG+P M
Sbjct: 807 KLSNGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDM 865

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           AQ  G + +  D A   V + L+
Sbjct: 866 AQGSGSDIDGLDAAFNAVRAELE 888


>gi|300784619|ref|YP_003764910.1| alanyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299794133|gb|ADJ44508.1| alanyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 886

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/919 (36%), Positives = 509/919 (55%), Gaps = 61/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   I   FL  F+  GH  +PS+ LI  +DP L+F N+GMV FK  F G+  P Y   
Sbjct: 1   MDTHEITDRFLRHFEGRGHTRVPSAPLI-LDDPNLLFVNAGMVQFKPYFLGEAPPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D+D VG+T RH+TFF+M GNFSFG YFKE AI+ AW+L+TK     
Sbjct: 60  TSVQKCVRT----PDIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAIEAAWELITKPQTEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY++D EA  LW+K++GL  ++I      DN+W M   GP GPCSEI+
Sbjct: 116 GFGLDPERIWATVYNDDSEAAGLWRKLTGLPGERIQARDGKDNYWDMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------KQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ  + +       +    LPK +IDTGMG+
Sbjct: 176 YDRGPAY-GREGGPVADEDRYIEIWNLVFMQDVRGDLSPKLGHKPIGELPKKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+AT+LQ   N Y+ DL + +I  +E+ +G +Y     + V  RVI DH R+   LI D
Sbjct: 235 ERVATILQGVENVYETDLVRPVIGRAEEFSGRRYGSNHADDVRFRVIADHARTGVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RR +   RLLG  EP++      +   MG  YPEL+     I 
Sbjct: 295 GVTPGNDGRGYVLRRLLRRIVRSTRLLGVQEPVLQEFAKVVRDTMGPTYPELVSGFDRIN 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E +R E+E F  TL  G  + D       +   ++L GD AF+L+DT+G P+D+  ++  
Sbjct: 355 EVVRIEEEAFLSTLTSGSRIFDMAAEETKRGGGDVLAGDKAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL  +D   F   + EQR+RA+A +    +G  +   +  + E++G T+F+GY  L+ 
Sbjct: 415 EQGLT-VDEEGFRTLMNEQRTRAKADAAARKTGHGDLSEYRKVLEQHGETEFLGYTDLQ- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + V A+++ G+ V    +G+K E+V D+TPFYAE+G
Sbjct: 473 ----------------------AEAKVVALLEDGQPVRSVSAGKKAELVLDRTPFYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ DTG  +GDG+ L++ DVQK   G++VH   V  G +  +  +  ++D   R  +  
Sbjct: 511 GQVADTGVLLGDGVELKVLDVQKIVPGLYVHRVEVVDGEIGLDSKVTGSVDAHRRLSIER 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHL+H A+    G   +Q GS  +P  +RFD T    +++  L  +E  VND +  
Sbjct: 571 SHSATHLVHAAVRGAYGKRAAQAGSLNSPGRMRFDFTTPGSVSADVLTEVEQEVNDYLQT 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V +    ++ A+  GA AL G KY + VRVV +     G +S  LCGGTHV   G++
Sbjct: 631 NVEVQSFTTTKDKALELGAVALFGEKYGNDVRVVDM-----GDYSRELCGGTHVDRIGQL 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ +VS++SI +G+ R+EA+ G  A  ++  +   +  LA+  KV    + GR++++  
Sbjct: 686 GLVKLVSDASIGSGVHRVEALVGTDALKYVRKEQLLVSQLANTFKVPSDQLPGRIDDVLT 745

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             +  +   A+ K Q  +           +I  V  ++ ++ +VD   L+++   ++ ++
Sbjct: 746 RLKNAEKEIAQLKTQQVLGSAGALVDKAQEIGGVTVVAEVVPDVDGNGLRALASDIRGRL 805

Query: 821 Q--SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
               G++ L   + E K S ++  T+   ++   A  L    A+ + GG GGG+P MAQ 
Sbjct: 806 GTRPGVVALFSPAGE-KLSFVVATTKAAQEKGIAAGKLVPSFAEKI-GGRGGGKPDMAQG 863

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N   A +A+  + S +
Sbjct: 864 GGTNPAGAAEAVTALRSAI 882


>gi|160892619|ref|ZP_02073409.1| hypothetical protein CLOL250_00149 [Clostridium sp. L2-50]
 gi|156865660|gb|EDO59091.1| hypothetical protein CLOL250_00149 [Clostridium sp. L2-50]
          Length = 888

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/907 (38%), Positives = 511/907 (56%), Gaps = 40/907 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SLIP ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLKMNSFSLIPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LTK   LD+ 
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWSWEFLTKVVGLDEN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y++D+EAF +W K  G++ +KI R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYEDDDEAFDIWNKEIGIAPEKIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG     + +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGHNNYTELVQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++ G+KY  +    V+ RVI DH+RS +F+ +DGILP+NEGRGY
Sbjct: 241 SIFDVDTIKALRDKVCEMAGVKYMEDEKTDVSIRVITDHIRSVTFMASDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +      AYPEL + K  I   + +E+E F 
Sbjct: 301 VLRRLLRRAARHGRLLGIEGRFLAELSKTVIEVSKDAYPELEEKKAHIFTCINTEEENFN 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L+G +  L     ++LNG+ AFKLYDT+G PLD+ ++IL  +G   +D   
Sbjct: 361 KTIDQGLSILNGFVEELNNSGKKVLNGENAFKLYDTYGFPLDLTKEILEEKG-IEVDTEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN+A+++QR  AR           +   +   +    ++FIGYD +  S  +        
Sbjct: 420 FNKAMDKQRETARKSRKVSNYMGADSTIYEDIDTALTSKFIGYDKVEASSNIIAITAEYK 479

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +   +                 E+V+    G    ++  +TPFYA  GGQ+GD G    +
Sbjct: 480 EGDQVTS---------------ELVDVISEGTNGSIITAETPFYATMGGQIGDAGVIETE 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             R  + D  K A     H   VE G L+   +  L++    R  +  NHSATHLL  AL
Sbjct: 525 SGRFIVKDTIKVAGDKIAHLGYVESGELKNGSTAKLSVTADRRALICKNHSATHLLQKAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS ++ D LRFD TH + +T  E+  +E  VN+ I ++L V T +M+ E
Sbjct: 585 KMVLGDHVEQAGSYVSEDRLRFDFTHFQAMTPEEIAKVEAIVNEQIDKDLKVKTEVMSIE 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA  +GA AL G KY ++VRVVS+        S   CGGTHV +TG I    I+SE  + 
Sbjct: 645 DAKKTGAMALFGDKYGEKVRVVSM-----DDFSVEFCGGTHVPNTGVIGTFKIISEMGVA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T   A ++    +++LK+ A   K     +  ++E +  E + L   ++K 
Sbjct: 700 AGVRRIEALTSVGAFNYYKEMEDELKAAAKAAKAEPAKLAEKIETMLAEIKALTSENSKL 759

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L              I  V  ++  + + D   L+++ D  + K+ + +I+L    K
Sbjct: 760 KDKLAKNSAGDALADAIDINGVKVLATSVEDTDMNALRNLGDDFKNKLGTSVIVLASA-K 818

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++ + T+D + +  +A ++ + SA ++GGGG GGRP+MAQ+GG N      A+A 
Sbjct: 819 DGKVNLIAMATDDAVKKGAHAGNIIKASAALVGGGG-GGRPNMAQAGGKNPAGIADALAK 877

Query: 892 VASFLKK 898
                K+
Sbjct: 878 AVETAKE 884


>gi|315658110|ref|ZP_07910982.1| alanine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|315496439|gb|EFU84762.1| alanine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 876

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/915 (36%), Positives = 498/915 (54%), Gaps = 57/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQMYIDFFVEKGHMVEPSAPLVPIDDNSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ LW    GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMAMEPDKLYVTIHPEDTEAYHLWHNDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAFGKNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  +I+  E+V+G KY       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVAQNVRTNYETDLFMPIIEEVEKVSGKKYLEIPEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLDIQEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL  GL +LD +++        +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLQEGLSILDQLIAKAKLTTKEINGSDAFKLYDTYGFPIELTEEIATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D+ +F   +++QR RAR       S   +     LK     ++F+GY+        
Sbjct: 414 IT-VDMETFENEMQQQRDRARQARQNSQSMQIQSEV--LKNITTKSKFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  ++  G+ V  A +G  +  V  +TPFYA +GGQ+ 
Sbjct: 467 -------------------QTEITDLIYNGQAVSHAEAGDIIYFVLKETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + + +V K   G  +H   ++ G +     +   ++   RR +  NHSA
Sbjct: 508 DHGTVGNDNFEIAVEEVTKAPNGQNLHKGTIQFGHVTVNSHVDANVNKDERRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  + LRFD +H  P+T+ E++ +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVESERLRFDFSHFGPMTNEEIEHVERRVNEEIWRGISV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M   +A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMPIAEAKEMGAMALFGEKYGDVVRVVNMAP-----FSLELCGGIHVQNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           I+SES   AG+RRIEA+TG+ A  +L G   K     ++LKV   + V+ +V ++ EE +
Sbjct: 683 IISESGTGAGVRRIEALTGRAAFLYLEGIQRKFNQTKTYLKVKSDDQVMEKVVQLQEEVK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +     +R      L++   +    +I     ++  +   + K ++  MD  + K+Q  
Sbjct: 743 HVNKQLEQRNKEITTLKMGNIEDQVEEINGFKVLATQVDIANPKAIRETMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L+    E K S++  V +    +  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILIS-EVEGKVSLIATVPKADTSKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLKK 898
              +++  +  ++KK
Sbjct: 861 NITESLRFIKDYIKK 875


>gi|329961902|ref|ZP_08299915.1| alanine--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328531125|gb|EGF57975.1| alanine--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 873

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/919 (35%), Positives = 483/919 (52%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRESFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y       +  RV+ DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIADMAGTTYGNNQQQDIAMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELIAQKD 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LL+  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETGILRYRQVKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETVEVIDTKKENNLPIHI---TKKLPEHLEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSCTHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AGIRRIEA TG R    L    + ++ L +    +  ++   + +
Sbjct: 674 GNIGMVKIVSESSVAAGIRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAP-DLSAAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  S  +I  V  +    + V +  +K++   L+
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAQLKEKLLQSVQEINGVKVIKFCSAMVPADAVKNIAFQLR 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A  L + +AK++ GG GGG+PH A 
Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGALVKEAAKLIQGG-GGGQPHFAT 851

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 852 AGGKNPDGIKAAVDKVIEL 870


>gi|307693255|ref|ZP_07635492.1| alanyl-tRNA synthetase [Ruminococcaceae bacterium D16]
          Length = 890

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/912 (36%), Positives = 511/912 (56%), Gaps = 54/912 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+++P    VTT
Sbjct: 9   LNELREMFLSFFETKGHLRLPSFSLIPQNDASLLLINSGMAPMKPFFTGEQEPPRHRVTT 68

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKC+R G    D++N+G+T RH T+FEMLGNFSFG YFK+ AI  AW+ LT  +   LD
Sbjct: 69  CQKCIRTG----DIENIGKTARHGTYFEMLGNFSFGDYFKKEAIHWAWEFLTSKEWVGLD 124

Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             RLY +V+        D+EAF++W +  G+ A++I +    DNFW    +GPCGPCSEI
Sbjct: 125 PERLYPSVFAGNETTPADDEAFRIWNEEIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           ++D+GE    G PG     + +RYIE+WN+VF QF+   +     L + +IDTGMGLER+
Sbjct: 184 YYDRGEQWGCGKPGCTVGCDCDRYIEVWNVVFSQFDNDGENHYTELKQKNIDTGMGLERL 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGIL 291
           A V Q   + +D+D   ++ +   ++TG  Y  ++   V+ RVI DH+RS++F+I DG+L
Sbjct: 244 ACVCQGVPSLFDVDTVMNITRKVTEITGASYGQSHATDVSLRVITDHIRSATFMICDGVL 303

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA  + +LLG  +P +  +   +  E    YPEL + +  I + +
Sbjct: 304 PSNEGRGYVLRRLLRRAARHGKLLGVNDPFLYTVCDTVIHENEGHYPELRERQDYITKVI 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           R E+E F KT+D GL + + +LS      +   +G  AFKLYDT+G P+D+  +++  +G
Sbjct: 364 RVEEENFAKTIDGGLKIFNDMLSEHKAKGESTFSGADAFKLYDTYGFPIDLTLEMVEEQG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F++ ++EQR RAR     LG      +     +    T+F+GYD        
Sbjct: 424 MK-LDEAEFHKQMDEQRQRARKAREALGDLGWAGV--EFGKDVPETEFVGYDHTAIDD-- 478

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V A+V + E  EE + G +  VV D+TPFYAE GGQ+ 
Sbjct: 479 --------------------AKVVALVVENEQAEEVMPGVEAIVVLDKTPFYAEMGGQVA 518

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    DG+  Q+TDVQK   G ++H   + +G+L+   ++   ID + R+ +   HSA
Sbjct: 519 DHGTISADGVTFQVTDVQKNKGGKYMHTGKLTQGVLKVGDTVSAAIDVKRRKAVMRAHSA 578

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL T+LG HV Q GS +  D LRFD TH   +T+ EL  +   VN+ + +   +
Sbjct: 579 THLLDKALRTVLGDHVHQAGSLVEEDRLRFDFTHFSALTAEELAKVSAMVNEAVLEGYDI 638

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T ++  E+A   GA AL G KY D VRVV +       +S   CGGTH+ +T ++ + +
Sbjct: 639 HTDVLPIEEAKKKGAIALFGEKYGDTVRVVDMGE----GYSVEFCGGTHLDNTAKVGVFH 694

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE S+ +G+RRIEA TGQ +   +    E L   A+ LK   G +  + E+   E + 
Sbjct: 695 ISSEFSVASGVRRIEATTGQASLDVMNRNQEMLFQAAAALKAKPGELREKAEQTMLEVKT 754

Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  +  K K + +  +         ++ ++  ++  I++ D+ +L+ + D L+ K  + +
Sbjct: 755 LHQMVEKFKAKESAGEADRFLFGARQVGELKVLTATIADADANKLRQMGDMLRDKAPNVV 814

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            +L  ++ EK   + +   E +     A ++ +    +  GG GGG+P  A  GG +  K
Sbjct: 815 AVLATVNGEKITFLAVCGKEAVAKGIKAGEIIKNVTAIC-GGKGGGKPDSAMGGGTDILK 873

Query: 885 ADQAIAGVASFL 896
            D A+A +  F+
Sbjct: 874 LDDALASIDDFV 885


>gi|222527366|ref|YP_002571837.1| alanyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|222451245|gb|ACM55511.1| alanyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 894

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/918 (38%), Positives = 514/918 (55%), Gaps = 57/918 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR TFL FF ++GH  +PSSSL+  +DPTL+F NSGMV FK++F G+E+  Y    
Sbjct: 5   TAAQIRETFLSFFIRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYSRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI LAW LLT+EF L  
Sbjct: 65  TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIALAWKLLTEEFKLPV 124

Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL+ TV+        D+EA  LW    G    +++R    DNFW M +TGPCGPCSEI 
Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIAQ-GADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G+ +      G + +   Y+EIWN VFMQ+++        LP+ S+DTGMGLERMA 
Sbjct: 184 MYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRA---TMQPLPRPSVDTGMGLERMAM 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V+Q   + Y+ DLF  +I    +  G    +   +   +R I DH R+ +FLIADG+LP 
Sbjct: 241 VMQGVHSTYETDLFVAIINQIIKTRGSDEEHYHAHRSAYRAIADHARAIAFLIADGVLPG 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GR YVLRRI+RRA    R +G+  P +  ++ ++  +MG AYPEL++ + LI      
Sbjct: 301 NLGRSYVLRRILRRAAYQGRTIGFERPFLADVITSVIEQMGEAYPELVKRRELILSAADQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ +F +TL  GL  L GV+       ++++ G+ AF L DT+G PLD+ Q I   +GL 
Sbjct: 361 EERQFLRTLSGGLTRLQGVIEQVRARGEQVIPGNDAFVLKDTYGFPLDLTQKIAAEQGLT 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   +  A+ EQR+R+RA +     G  + +W  L     A+ F GY+ L        
Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAASKRGGEAD-LWADL--DLPASHFTGYERLSDR----- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V  ++  G+ +  A +G+ V++V D TPFYAE+GGQ+GDT
Sbjct: 472 ------------------ATVIGMLGDGDALTSADTGRSVQIVLDTTPFYAESGGQIGDT 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +G    +QI D ++   G+ VH+  V  G +     +  T+D   R  +  NH+ATH
Sbjct: 514 GLLVGPEGSVQIEDTRRPLPGLIVHYGRVVNGRISVGDQVQATVDVVRRADIQRNHTATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  AL  +LG H +Q GS + PD LRFD TH+K +   EL+ +E  +N  +  +  V  
Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKAVDPEELREVEQRLNKWVRADTTVRW 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGE 704
            I   +DA+A GA AL G KY D VR+V++       E E     S  LCGGTHV+ TGE
Sbjct: 634 EITGYQDAMARGAIALFGEKYGDTVRLVTIERGQTLAEGEFASRDSLELCGGTHVNHTGE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + IVSE SI +GIRRIEA+TG+ A   +  Q + L+ LA+ +      ++ R++ + 
Sbjct: 694 IGFVRIVSEGSIGSGIRRIEALTGRGAEGWVEQQAQTLRELAARINAQPAQLLERIDALL 753

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            E+R+ +      + +L  E L         +A V  ++  +       L+ + + L+ K
Sbjct: 754 AEHRQRKQELEALRSKLAREQLDLLLGRVQHVAGVPLLAAEVEADSVDRLREMGEYLRDK 813

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + + +I+L G     K  +L +VT DL+ R  NAV L +  A ++GGGG GGRP +AQ+G
Sbjct: 814 LGNAVIVL-GAQINGKPQLLTIVTPDLVRRGLNAVQLVKPLAALVGGGG-GGRPEIAQAG 871

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K   AI      L
Sbjct: 872 GRHPDKLAAAIGAAVEVL 889


>gi|163849369|ref|YP_001637413.1| alanyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|205830020|sp|A9WCR2|SYA_CHLAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|163670658|gb|ABY37024.1| alanyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
          Length = 894

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/918 (38%), Positives = 514/918 (55%), Gaps = 57/918 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR TFL FF ++GH  +PSSSL+  +DPTL+F NSGMV FK++F G+E+  Y    
Sbjct: 5   TAAQIRETFLSFFIRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYSRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI LAW LLT+EF L  
Sbjct: 65  TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIALAWKLLTEEFKLPV 124

Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL+ TV+        D+EA  LW    G    +++R    DNFW M +TGPCGPCSEI 
Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIAQ-GADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G+ +      G + +   Y+EIWN VFMQ+++        LP+ S+DTGMGLERMA 
Sbjct: 184 MYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRA---TMQPLPRPSVDTGMGLERMAM 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V+Q   + Y+ DLF  +I    +  G    +   +   +R I DH R+ +FLIADG+LP 
Sbjct: 241 VMQGVHSTYETDLFVAIINQIIKTRGSDEEHYHAHRSAYRAIADHARAIAFLIADGVLPG 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GR YVLRRI+RRA    R +G+  P +  ++ ++  +MG AYPEL++ + LI      
Sbjct: 301 NLGRSYVLRRILRRAAYQGRTIGFERPFLADVITSVIEQMGEAYPELVKRRELILSAADQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ +F +TL  GL  L GV+       ++++ G+ AF L DT+G PLD+ Q I   +GL 
Sbjct: 361 EERQFLRTLSGGLTRLQGVIEQVRARGEQVIPGNDAFVLKDTYGFPLDLTQKIAAEQGLT 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   +  A+ EQR+R+RA +     G  + +W  L     A+ F GY+ L        
Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAASKRGGEAD-LWADL--DLPASHFTGYERLSDR----- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V  ++  G+ +  A +G+ V++V D TPFYAE+GGQ+GDT
Sbjct: 472 ------------------ATVIGMLGDGDALTSADTGRSVQIVLDTTPFYAESGGQIGDT 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +G    +QI D ++   G+ VH+  V  G +     +  T+D   R  +  NH+ATH
Sbjct: 514 GLLVGPEGSVQIEDTRRPLPGLIVHYGRVVNGRISVGDQVQATVDVVRRADIQRNHTATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  AL  +LG H +Q GS + PD LRFD TH+K +   EL+ +E  +N  +  +  V  
Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKAVDPEELREVEQRLNKWVRADTTVRW 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGE 704
            I   +DA+A GA AL G KY D VR+V++       E E     S  LCGGTHV+ TGE
Sbjct: 634 EITGYQDAMARGAIALFGEKYGDTVRLVTIERGQTLAEGEFASRDSLELCGGTHVNHTGE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + IVSE SI +GIRRIEA+TG+ A   +  Q + L+ LA+ +      ++ R++ + 
Sbjct: 694 IGFVRIVSEGSIGSGIRRIEALTGRGAEGWVEQQAQTLRELAARINTQPAQLLERIDALL 753

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            E+R+ +      + +L  E L         +A V  ++  +       L+ + + L+ K
Sbjct: 754 AEHRQRKQELEALRSKLAREQLDLLLGRVQHVAGVPLLAAEVEADSVDRLREMGEYLRDK 813

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + + +I+L G     K  +L +VT DL+ R  NAV L +  A ++GGGG GGRP +AQ+G
Sbjct: 814 LGNAVIVL-GAQINGKPQLLTIVTPDLVRRGLNAVQLVKPLAALVGGGG-GGRPEIAQAG 871

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K   AI      L
Sbjct: 872 GRHPDKLAAAIGAAVEVL 889


>gi|70726302|ref|YP_253216.1| alanyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|83305859|sp|Q4L6W5|SYA_STAHJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68447026|dbj|BAE04610.1| alanyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
          Length = 876

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/915 (35%), Positives = 498/915 (54%), Gaps = 57/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  AW+ LT   
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIHFAWEFLTSEN 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+++W    GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDSEAYRIWNDEIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G+      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGDEYGQDDPSEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  +I   E+V   KY     + +  +VI DH+R+ +F IADG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIINEVEKVADKKYLVNNEHDIAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLDINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL  GL +L+ +L+     +  +NG  AFKLYDT+G P+++ +++     
Sbjct: 354 IKSEEERFHETLQEGLAILNNLLAKAKSSNNEINGSDAFKLYDTYGFPIELTEELASQEN 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              +D+ +F + +++QR+RAR       S   +     LK     ++F+GY+        
Sbjct: 414 -ISVDMATFEKEMDQQRTRAREARQSSQSMQIQSEV--LKNITTESKFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  ++  GE VE A  G+ V  +  +TPFYA +GGQ+ 
Sbjct: 467 -------------------QTTLTDLIYNGEKVESAEPGETVYFILKETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    +   +++T+V K   G  +H  +++ G +     +  +++   R+ +  NHSA
Sbjct: 508 DKGTVGNENFEIEVTEVTKAPNGQNLHQGVIQFGQVTINSDVDASVNRDERKDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  + LRFD +H  P+T  E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGEHVNQAGSLVESERLRFDFSHFGPMTQDEIDQVERRVNEEIWRGISV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M   +A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMPINEAKQMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVDNTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           I+SES   AG+RRIEA TG+ A  HL     K  S+   +KV   N V  ++ ++ EE +
Sbjct: 683 IISESGTGAGVRRIEAFTGKSAFLHLEDIQNKFNSIKDQVKVKSDNQVFDKIVQLQEEEK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     ++  +   ++KE++  MD  + K Q  
Sbjct: 743 NLHKQLEQRNKEITSLKMGNIEDQIEEINGFKVLATEVEVSNAKEIRQTMDDFKSKQQDA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L     E K S++  V ++  D+  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILASDLGE-KVSLIATVPKEQTDKIKAGDIIKNMAPLV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLKK 898
              +A+  +  ++KK
Sbjct: 861 NISEALRFIKDYIKK 875


>gi|169343614|ref|ZP_02864613.1| alanyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|169298174|gb|EDS80264.1| alanyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
          Length = 879

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/908 (36%), Positives = 514/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +
Sbjct: 4   MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE
Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                      + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q 
Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGR
Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +    +DI
Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEK-CLELDI 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +FN+ ++EQR RAR          +E+   +  +    T+F GY  L            
Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        +S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------FNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNIT 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH 
Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M+
Sbjct: 575 ALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES 
Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++     A
Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L             +I  V  ++  + +VD   L+ + D ++ K+ +GI++L   
Sbjct: 750 ELKAKLVQGAEDDILKDKIEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLASG 809

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K +++ + T++ L +  +   + +  A V+GGGG GGRP MAQ+GG N     +A+
Sbjct: 810 -NGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867

Query: 890 AGVASFLK 897
                 ++
Sbjct: 868 EKAKEVVE 875


>gi|168214257|ref|ZP_02639882.1| alanyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|170714273|gb|EDT26455.1| alanyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
          Length = 879

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/908 (36%), Positives = 516/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +
Sbjct: 4   MGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE
Sbjct: 120 KDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGE 178

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                      + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q 
Sbjct: 179 GKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGR
Sbjct: 239 VDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +DI
Sbjct: 359 FNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDI 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +FN+ ++EQR RAR          +E+   +  +    T+F GY  L            
Sbjct: 418 ENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       ++S V  +    E   E   G+   ++ D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------LNSKVIVLGNNEEFKAELKEGEDGFLLTDKTPFYAEMGGQVGDRGNIT 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH 
Sbjct: 515 SETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLHE 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M+
Sbjct: 575 ALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEMS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES 
Sbjct: 635 LDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++     A
Sbjct: 690 VAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEIA 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L             +I  V  ++  + +VD   L+ + D ++ K+ +GI++L   
Sbjct: 750 ELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLSDKVRNKLNNGIVVLAS- 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K +++ + T++ L +  +   + +  A V+GGGG GGRP MAQ+GG N     +A+
Sbjct: 809 DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGG-GGRPDMAQAGGKNPENIAKAL 867

Query: 890 AGVASFLK 897
                 ++
Sbjct: 868 EKAKEVVE 875


>gi|189468166|ref|ZP_03016951.1| hypothetical protein BACINT_04561 [Bacteroides intestinalis DSM
           17393]
 gi|189436430|gb|EDV05415.1| hypothetical protein BACINT_04561 [Bacteroides intestinalis DSM
           17393]
          Length = 872

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/919 (35%), Positives = 488/919 (53%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRNSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIDWAWEYLVEVLKI 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W     L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKNLYATVFEGSPEEGLERDNEAAAFW--EQHLPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRPEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y  +N   +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIADMAGTAYGKDNQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRQAFMYKLLPVLIENMGEAYPELEAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LISKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +LKE+   T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAIETGDWITLKER--TTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D + R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPAHPEAPMMACVDTEKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  EDA   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEDAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    +   ++ LK L +    +  ++ G + +
Sbjct: 674 GNIGMIKIVSESSVAAGVRRIEAYTGARVEELMDTIEDTLKDLKALFNNAP-DLAGTIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       + K     E L  +  +I  +  +      + ++ +K++   L+
Sbjct: 733 YIEENAGLKKQMEDFMREKEAQIKERLLKNMQEIHGIKVIKICAP-IPAESIKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLCFVAGTINEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + AI  V   
Sbjct: 851 AGGKNIDGLNAAIEKVLEL 869


>gi|256962036|ref|ZP_05566207.1| alanyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|293383058|ref|ZP_06628976.1| alanine--tRNA ligase [Enterococcus faecalis R712]
 gi|293388219|ref|ZP_06632740.1| alanine--tRNA ligase [Enterococcus faecalis S613]
 gi|312907353|ref|ZP_07766344.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312909969|ref|ZP_07768817.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|256952532|gb|EEU69164.1| alanyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|291079723|gb|EFE17087.1| alanine--tRNA ligase [Enterococcus faecalis R712]
 gi|291082403|gb|EFE19366.1| alanine--tRNA ligase [Enterococcus faecalis S613]
 gi|310626381|gb|EFQ09664.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311289927|gb|EFQ68483.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
          Length = 880

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF
Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDVG--DNFWDIG-AGPSGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F    +     LP  +IDTGMGLE
Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +     + L+G + FKLYDT G P+++ +++  
Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L   
Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+Q   +V EA +G   E++F +TPFYAE GG
Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    V  KKA      H +     L       L +D + R ++  
Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I
Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R LQ  + +   +L  +           +  V +++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   ++++K S+L  +T+D+      A DL +  A  +  GGGGGRP MAQ+G
Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKV-DGGGGGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+A V ++L
Sbjct: 860 GKNPAGIADALAEVENWL 877


>gi|289550615|ref|YP_003471519.1| Alanyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289180147|gb|ADC87392.1| Alanyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 876

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 498/915 (54%), Gaps = 57/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQMYIDFFVEKGHMVEPSAPLVPIDDNSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ LW    GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMAMEPDKLYVTIHPEDTEAYHLWHNDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAFGKNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  +I+  E+V+G KY       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVAQNVRTNYETDLFMPIIEEVEKVSGKKYLEIPEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLDIQEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL  GL +LD +++        +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLQEGLSILDQLIAKAKLTTKEINGSDAFKLYDTYGFPIELTEEIATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D+ +F   +++QR RAR       S   +     LK     ++F+GY+        
Sbjct: 414 IT-VDMETFENEMQQQRDRARQARQNSQSMQIQSEV--LKNITTKSKFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  ++  G+ V  A +G  +  V  +TPFYA +GGQ+ 
Sbjct: 467 -------------------QTEITDLIYNGQAVSHAEAGDIIYFVLKETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + + +V K   G  +H   V+ G +     +   ++   RR +  NHSA
Sbjct: 508 DHGTVGNDNFEIAVEEVTKAPNGQNLHKGTVQFGHVTVNSHVDANVNKDERRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  + LRFD +H  P+T+ E++ +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVESERLRFDFSHFGPMTNEEIEHVERRVNEEIWRGISV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M   +A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMPIAEAKEMGAMALFGEKYGDVVRVVNMAP-----FSLELCGGIHVQNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           I+SES   AG+RRIEA+TG+ A  +L G   K     ++LKV   + V+ +V ++ EE +
Sbjct: 683 IISESGTGAGVRRIEALTGRAAFLYLEGIQHKFNQTKTYLKVKSDDQVMEKVVQLQEEVK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +     +R      L++   +    +I     ++  +   + K ++  MD  + K+Q  
Sbjct: 743 HVNKQLEQRNKEITTLKMGNIEDQVEEINGFKVLATQVDIANPKAIRETMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L+    E K S++  V +    +  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILIS-EVEGKVSLIATVPKADTSKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLKK 898
              +++  +  ++KK
Sbjct: 861 NITESLRFIKDYIKK 875


>gi|160947669|ref|ZP_02094836.1| hypothetical protein PEPMIC_01604 [Parvimonas micra ATCC 33270]
 gi|158446803|gb|EDP23798.1| hypothetical protein PEPMIC_01604 [Parvimonas micra ATCC 33270]
          Length = 868

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/904 (37%), Positives = 520/904 (57%), Gaps = 54/904 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +LEFF+  GH  L S  LIP ND +L+  N+GM P K+ FTG +K      T+
Sbjct: 6   LNEIREEYLEFFESKGHLRLKSYPLIPNNDKSLLLINAGMAPLKDYFTGVKKMSKNRATS 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D+DNVG+T RH TFFEMLGNFSFG YFK  AI  AW+ LT++ ++D+ 
Sbjct: 66  SQKCIRTA----DIDNVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWEFLTEKLEMDKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            L +TVY+ED+EA+ +W+   GLSA+KI R+   DNFW + E GPCGPCSEI +D+GE  
Sbjct: 122 LLSVTVYEEDDEAYDIWRNEVGLSAEKIQRLGKEDNFWEL-EVGPCGPCSEIMYDRGEKY 180

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                      +R++EIWNLVF QF +        L   +IDTGMGLER+  VL+EK N 
Sbjct: 181 T-------NPDDRFMEIWNLVFTQFNKDKDGNYHRLEHPNIDTGMGLERLTLVLEEKDNI 233

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++I L   +I+  E+++G+KY+ N    ++ RVI DH R+ +FLI DG++P+NE RGYVL
Sbjct: 234 FEIGLVDTIIKKIEEISGVKYKSNEISDISIRVIADHARAMTFLIYDGVIPSNEQRGYVL 293

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RRA  + +LLG  +  ++ +   +     + YPEL++    I + L +E+ +F +T
Sbjct: 294 RRLIRRAARHGKLLGIKDNFLVDVSKVVMEAYNTEYPELLEDSERIFKILNAEESKFQET 353

Query: 362 LDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +++GL +L+  +        +IL+GD AFKLYDT+G PLD+ ++IL  + +  +D  +FN
Sbjct: 354 IEQGLGILNSYIEDEKSKNSKILSGDKAFKLYDTYGFPLDLTKEILEEQKMT-VDEEAFN 412

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +E+Q+ RAR       +G +EK      +    T+F+GY                   
Sbjct: 413 KNMEKQKIRARQGRNVSSAGWSEK-NTDYLKSLETTEFLGYTE----------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                 N     V  + +    V     G K  +V D+T FY E GGQ+GD G   G   
Sbjct: 455 ------NVCIGKVIKLFKDELEVSILNQGDKALLVSDKTVFYGEGGGQVGDVGIIEGKHC 508

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L++ D +K       H   V  G ++    L+  ID  NRR +  NHSATHLLH AL  
Sbjct: 509 KLKVLDTKKNKNNGIFHSVEVIEGSVKLNDELIFKIDVNNRRDIMKNHSATHLLHQALIE 568

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+H++Q GS +  + LRFD+TH + I+  +LK +E  VND IA NL  + + +  E++
Sbjct: 569 VLGNHINQAGSLVDANKLRFDITHFEAISPEDLKRVEQIVNDKIALNLETIIKEVPLEES 628

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA  L   KY D VRVVS         S  LCGGTHV +  EI +  I+SESS+ AG
Sbjct: 629 SKMGAIGLFEDKYKDIVRVVSFGG-----WSIELCGGTHVKNVSEIQMFKIISESSVAAG 683

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEAITG++   +L   + +++ +++ LK  +  +V +   + +E + L+    + KL
Sbjct: 684 VRRIEAITGRKVYDYLKKTENQIEEVSNVLKCKKAEMVSKAVSMVDEIKSLEKELKEIKL 743

Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           ++ +  L        +I  ++F++  +   +  +L+ ++D L+ K+ + +I+   + +  
Sbjct: 744 EITLSSLDSFIAEKKEINGISFIAKKVEFENQNDLRDLIDKLRDKLGTSVIVFANVYQ-G 802

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +  + V++DL   + NA ++ R  AK++ GG GGGRP +A +GG + +K D A+    
Sbjct: 803 KLTFTVGVSKDLNARKINAGNIVREIAKLV-GGNGGGRPDIASAGGKDLDKVDFALKQAE 861

Query: 894 SFLK 897
             LK
Sbjct: 862 EILK 865


>gi|237785598|ref|YP_002906303.1| alanyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758510|gb|ACR17760.1| Alanyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 886

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/920 (35%), Positives = 486/920 (52%), Gaps = 59/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F E F K GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MYTHEIRERFTEHFVKAGHTSVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFNTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSIQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGNYFKEGAITHAWELLTSSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++T+Y +D+EA  +W    G+  ++I R+   DN+WSM   GPCGP SEI+
Sbjct: 116 GFGLDPDRLWVTIYQDDDEAGDIWHDKIGIPRERIQRLGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G   +  RYIEIWNLVFM+ E+         +    LPK +IDTG+G+
Sbjct: 176 YDRGPEY-GKEGGPVVDDTRYIEIWNLVFMEKERGEGTGKENFEILGPLPKKNIDTGLGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E++TG  Y     + V  RVI DH R++  LI D
Sbjct: 235 ERVACILQGVDNVYETDLLRPVIDVAEELTGAPYGARHADDVRFRVIADHCRTALMLILD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+      I 
Sbjct: 295 GVAPSNEGRGYILRRLLRRIVRSARLLGATHETMERFMETVRRTMTPSYPEIEDNWERIR 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
            T  +E+  F  TL+ G  L   +   L      +  G  AF L+DTHG P+D+  ++  
Sbjct: 355 STAVAEERAFLATLESGEKLFTTIAEDLKARGETVFPGSDAFILHDTHGFPVDLTAEMAN 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +GL  +D  +F++ +++Q++RA+A +     G      +       AT F GYD L   
Sbjct: 415 EQGLT-LDRDAFDRHMQDQKARAKADNRAKKHGHANLSVYRPFVDNHATVFTGYDTLED- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                    +  +V  G++VE+A  G  V+V+ D+TPFYAE+GG
Sbjct: 473 ----------------------EGTILGMVSNGQLVEKATEGDHVDVILDRTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G     G RL++ DVQK  + ++VH   V  G +   M +   +D Q R      
Sbjct: 511 QMADHGELSTAGARLKVNDVQKIGKKLWVHKTEVTGGEIAVGMKVEGKVDPQWRHAARQA 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THL+H AL  +LG    Q GS   P  LRFD   ++P+T  +LK I+D  N  +  +
Sbjct: 571 HSGTHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNFNRPLTDGQLKDIQDIANSAVDAD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T   + ++A   GA AL G  Y D VRVV +    GG  S  LCGGTHV    ++ 
Sbjct: 631 YTVNTIETSLDEAKKMGALALFGQSYGDWVRVVEI----GGPFSMELCGGTHVDHASQVG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G RRIEA TG  +  +L  Q   L ++A+ LK    +V  RV+++   
Sbjct: 687 PIAVLGESSVGSGARRIEAYTGMDSFRYLAQQQSTLTTVATSLKAPADDVPERVDQLAAR 746

Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
               +   A+   Q              ++ +V  ++  +S+V++K+L+ +   ++ ++ 
Sbjct: 747 LHDAERAVARAHQQALQSKADEFVAHAQRLNNVTVVAESVSDVEAKDLRPMALDVRNRLG 806

Query: 822 S--GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +   +++L+  + + K   ++   E    +  NA  L +   + +  G GGG+P MAQ  
Sbjct: 807 NEPAVVVLISSTGD-KVPFVVSANEQATGNGINANSLVKTIGQSVN-GRGGGKPDMAQGS 864

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G +      A+  V   LKK
Sbjct: 865 GSDATGISHALDAVLDDLKK 884


>gi|310778164|ref|YP_003966497.1| alanyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309747487|gb|ADO82149.1| alanyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 868

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/911 (36%), Positives = 513/911 (56%), Gaps = 58/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF++  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIRQRFVEFFKEKEHKHYESASLIP-DDPTLLLTVAGMVPFKPFFLGQKEAPNSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V T QKC+R     NDL+NVG+T RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L
Sbjct: 60  VVTYQKCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFITEVLGL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +++I+V+  D+EA K+W +   +  ++I+R+   DN+WS   TG CGPCSEI+ D G
Sbjct: 116 EKEKMWISVFTTDDEAEKIWIEKCNIPKERIVRLGEEDNWWSAGPTGSCGPCSEIYVDMG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +    +R++EIWNLVF ++ ++       LPK +IDTG GLER+A+V+
Sbjct: 176 IEYGGDENSKPGDPEADDRFLEIWNLVFTEWNKKEDGTLEPLPKKNIDTGAGLERIASVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+K NNY+ DL   +I+ + ++T  +Y        + +VI DH+R  SFLI DG+LP+NE
Sbjct: 236 QKKINNYETDLILPIIEEAGRLTSSEYGKTEKTDFSLKVIADHIRGISFLINDGVLPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + RLLG +E  +  L+  +   M  AYPE+++    I++ ++ E+
Sbjct: 296 GRGYVLRRVLRRAVRHGRLLGTSENFLYKLVDKVVEIMKGAYPEILENMEHIKKIIKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TL +G+ +++  +    +  +  L+G++ FKLYDT+G P ++ ++I   +    +
Sbjct: 356 EKFSHTLGQGMQMVNDEIEKAKESGENKLSGEITFKLYDTYGFPYELTEEICEEKD-VEV 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
            +  F   +EEQ+ RAR+    +     +       +KYG T F GY+ L+    +    
Sbjct: 415 YLEEFTAKMEEQKKRARSAREVVMEKGQDSFVEEFYDKYGKTVFEGYEKLQNKSIVYH-- 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                       VE      KV ++F++TP YAE+GGQ  D G 
Sbjct: 473 ----------------------------VENIDEN-KVMLIFNKTPLYAESGGQASDHGT 503

Query: 534 AIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              DG++ +I DVQ +K   +          +L+  + + LT+D + RR +  NH+ATHL
Sbjct: 504 VTADGLKGKIIDVQKQKEIFMHTVVVDEGMDLLKKGLEVTLTVDDERRRDIMRNHTATHL 563

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LGSHV Q GS +  D LRFD TH + +T  +L+ +E  VN  I +N  +  +
Sbjct: 564 LHKALKDVLGSHVQQAGSLVDADRLRFDFTHYEAVTRDQLEEVEKIVNRQIFKNTSLKVQ 623

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  ++A  SG+ AL G KY D VRVV+V       +SS LCGG HV  TGEI L  I++
Sbjct: 624 HMTLDEAKESGSTALFGDKYGDLVRVVNVPG-----YSSELCGGIHVDRTGEIGLFNILT 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG RRIEA TG  +   +   +  + S++  LK    ++  ++E+  E +R+   
Sbjct: 679 ETGVAAGTRRIEATTGVASYKTVNQMERLILSVSDALKTDPKHLEEKIEKTIEAFRETNK 738

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L   +      +  +I +V  +       ++  L+ ++D  + K+ S II+L
Sbjct: 739 ELEALKSKLASYEANSLFDNIEEINNVKVLIKAFEGKEAGSLREIVDKAKDKLGSCIIVL 798

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                 +KA   + VT+DL+ +  A DL +  AK + GG GGGRP  AQ+GG +G K  +
Sbjct: 799 GT--DNEKAVFAVGVTKDLMSKVKAGDLVKEIAK-IAGGNGGGRPDFAQAGGKDGKKVPE 855

Query: 888 AIAGVASFLKK 898
           A+      L +
Sbjct: 856 ALDHARKILTE 866


>gi|259507362|ref|ZP_05750262.1| alanine--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|259165073|gb|EEW49627.1| alanine--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 906

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/921 (35%), Positives = 494/921 (53%), Gaps = 62/921 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61
              IR  F   F   GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     
Sbjct: 19  THEIRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANGTA 77

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 78  TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVEEG 133

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 134 GYGLDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIY 193

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G + +  RY+EIWNLVFM+FE+       + +    LPK +IDTGMG+
Sbjct: 194 YDRGPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGMGV 252

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E +TG  Y  +N   +  RVI DH R+   LI D
Sbjct: 253 ERVACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLILD 312

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+ + +  I 
Sbjct: 313 GVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRERIL 372

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  L +   +         + G  AF L+DT+G P+D+  ++  
Sbjct: 373 RVAITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEMAA 432

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D+  F   + EQRSRA+A S     G  +   +        T F G++ L   
Sbjct: 433 EAGLE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELES- 490

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+GG
Sbjct: 491 ----------------------QSRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAESGG 528

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           QLGD G  +     + I DVQK  + ++VH A+V  G L     +V  +D Q R      
Sbjct: 529 QLGDRGRILMGDTVVDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAARQA 588

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHL+H AL  +LG    Q GS   P  LRFD  ++  +T  +L  I+   N+ +  +
Sbjct: 589 HTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVDTD 648

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +I 
Sbjct: 649 WAVNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQIG 704

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESSI +G+RRIEA +G  + ++L  +    +SL+S LK    ++  R+ ++ ++
Sbjct: 705 PVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLLDK 764

Query: 767 YRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            +  +   A   +R+L    E+      +I  +  +   +   +D+ +L+++   L+ K+
Sbjct: 765 LKAAEKEIATLHRRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRDKL 824

Query: 821 --QSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
               G++++   S++  K   +   T+  + R  ++ +L +L    +  G GGG+P MAQ
Sbjct: 825 SNGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDMAQ 883

Query: 877 SGGPNGNKADQAIAGVASFLK 897
             G + +  D A   V + L+
Sbjct: 884 GSGSDIDGLDAAFNAVRAELE 904


>gi|25028304|ref|NP_738358.1| alanyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|23493588|dbj|BAC18558.1| putative alanyl-tRNA synthetase [Corynebacterium efficiens YS-314]
          Length = 926

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/921 (35%), Positives = 494/921 (53%), Gaps = 62/921 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61
              IR  F   F   GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     
Sbjct: 39  THEIRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANGTA 97

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 98  TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVEEG 153

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 154 GYGLDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIY 213

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G + +  RY+EIWNLVFM+FE+       + +    LPK +IDTGMG+
Sbjct: 214 YDRGPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGMGV 272

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E +TG  Y  +N   +  RVI DH R+   LI D
Sbjct: 273 ERVACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLILD 332

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+ + +  I 
Sbjct: 333 GVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRERIL 392

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  L +   +         + G  AF L+DT+G P+D+  ++  
Sbjct: 393 RVAITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEMAA 452

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D+  F   + EQRSRA+A S     G  +   +        T F G++ L   
Sbjct: 453 EAGLE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELES- 510

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+GG
Sbjct: 511 ----------------------QSRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAESGG 548

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           QLGD G  +     + I DVQK  + ++VH A+V  G L     +V  +D Q R      
Sbjct: 549 QLGDRGRILMGDTVVDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAARQA 608

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHL+H AL  +LG    Q GS   P  LRFD  ++  +T  +L  I+   N+ +  +
Sbjct: 609 HTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVDTD 668

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +I 
Sbjct: 669 WAVNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQIG 724

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESSI +G+RRIEA +G  + ++L  +    +SL+S LK    ++  R+ ++ ++
Sbjct: 725 PVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLLDK 784

Query: 767 YRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            +  +   A   +R+L    E+      +I  +  +   +   +D+ +L+++   L+ K+
Sbjct: 785 LKAAEKEIATLHRRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRDKL 844

Query: 821 --QSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
               G++++   S++  K   +   T+  + R  ++ +L +L    +  G GGG+P MAQ
Sbjct: 845 SNGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDMAQ 903

Query: 877 SGGPNGNKADQAIAGVASFLK 897
             G + +  D A   V + L+
Sbjct: 904 GSGSDIDGLDAAFNAVRAELE 924


>gi|320528969|ref|ZP_08030061.1| alanyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320138599|gb|EFW30489.1| alanyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 872

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/911 (35%), Positives = 511/911 (56%), Gaps = 59/911 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + +R  +L FF +K  H  L S SLIP +DPTL+   +GM P K  FTG+ KP    
Sbjct: 1   MTGNELREAYLRFFAEKKDHLRLASYSLIPEDDPTLLLIGAGMAPLKPFFTGKMKPPCPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L
Sbjct: 61  ITTSQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIEL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++++Y +D EA  +W +  GL  D I+ +   DNFW +   GPCGP SEI+ D G
Sbjct: 117 PKEKLWVSIYPDDNEARAIWLEQPGLLPDHIVPLN--DNFWEIGP-GPCGPDSEIYIDLG 173

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +R++EIWNLVF Q+++  + E  +L   +IDTG GLER+A+V+Q
Sbjct: 174 EGRGCGEPTCGVGCDCDRFLEIWNLVFTQYDRTEEGEYNLLAHKNIDTGCGLERLASVVQ 233

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I  + +++G+ Y  + +  ++ +VI DH RS S +I DGILP+NEG
Sbjct: 234 NKETNFETDLLYPIIAYASKISGVAYGSDKSKDISLKVIADHARSISVMIMDGILPSNEG 293

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRR +RRA+ + R+LG T+P +   + A+      A  + EL   +  I+  +R E
Sbjct: 294 RGYVLRRTLRRAIRHGRMLGITDPFLDGAVDAVVEIFRGAPDFSELTAKQEYIKRVIRVE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF  TL +G+ LL+G +  L ++   +L GD+ FKLYDT+G P ++ ++IL   G+  
Sbjct: 354 EERFASTLAQGMELLNGEIDRLKEENKVVLPGDIGFKLYDTYGFPRELTEEILHEHGIT- 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D + F++ +E QRSRAR+                                        D
Sbjct: 413 LDGVEFDKEMEAQRSRARSARA-----------------------------ENQVVAVPD 443

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +        +    ++V AI + GEIV+    G+   ++ D+TPFYAE GGQ+GD G
Sbjct: 444 LSNIDTSALRSDSTAKEAVVAAIWRDGEIVDSLRDGESAGIILDRTPFYAEGGGQVGDEG 503

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   + I++ +K  +G   H A VE G +     + +T++ + +   + NH+ATHL
Sbjct: 504 VLRSDLGYISISNAKKLPDGTIYHIAYVEEGEIHRGDRVDITVNRERKLSSARNHTATHL 563

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G+HV Q GS +TPD LRFD T+ +P+T  +++ IE+ VN  I +++ +   
Sbjct: 564 LQAALQRVVGAHVKQAGSLVTPDRLRFDFTNFEPVTEQQIRDIEELVNAEILRSVDLDIS 623

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M   DA   GA AL G KY D VRVVSV        S  LCGG+HV +TG+I L  I+ 
Sbjct: 624 MMPIADAKNMGAMALFGEKYGDIVRVVSVPG-----FSIELCGGSHVGNTGQIGLFKIIG 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AG+RRIEAITG+ A S+       ++ +++ LK    ++  ++++  +E + +Q 
Sbjct: 679 EFGVAAGVRRIEAITGKAAFSYAATLYHTVQEISAKLKTRPEDLSYQIDKFLDERKAMQE 738

Query: 773 IHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              +      K       ++  +I   + ++   +     EL+++ D   +K+  GI++L
Sbjct: 739 QLRQFAEFRDKADAQKLLMAVREIGAFHVVAGKANVDSMDELRTIADLACEKLDHGIVIL 798

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K S+++   ++ +    +A  + + +AK +GGGG GGRP MAQ+GG       
Sbjct: 799 AAV-IDDKVSLVVKADKNAVSAGAHAGQIIKEAAKEVGGGG-GGRPDMAQAGGKTPENIP 856

Query: 887 QAIAGVASFLK 897
           QA     S ++
Sbjct: 857 QAFDAAISVIQ 867


>gi|313683350|ref|YP_004061088.1| alanyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
 gi|313156210|gb|ADR34888.1| alanyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
          Length = 851

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/900 (38%), Positives = 506/900 (56%), Gaps = 55/900 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQ 59
           M     +R  FL FF+   HE +PSS L+P +D TL+FTN+GMVPFK+IFTG    P   
Sbjct: 1   MM---DVREAFLAFFESKQHERVPSSPLVP-DDATLLFTNAGMVPFKSIFTGDIPIPANP 56

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             T+ Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   
Sbjct: 57  RATSAQTCIRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKEEAIAHAWEFVTEVMK 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + +L++TV++ D+EA ++WKK   ++AD+I+R+   DNFW M +TGPCGPCSEIF DQ
Sbjct: 117 LPKEKLWVTVHESDDEAEEIWKK--HIAADRIMRLGDKDNFWQMGDTGPCGPCSEIFIDQ 174

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G E   G       +G+R++EIWNLVFMQ+E+  K E   LPK SIDTGMGLER   VL+
Sbjct: 175 GAEHFNGPEDYMGGDGDRFLEIWNLVFMQYERNAKGELKPLPKPSIDTGMGLERATAVLE 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             T+NYD  LF  +I+  E + G  Y      ++RVI DH+R+ +FL+A G   +NEGRG
Sbjct: 235 GVTSNYDSTLFMPIIKKVEALIGKPYVYATGASYRVIADHIRTVTFLLAQGTNFSNEGRG 294

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +  LLG+T+P M  +   +   MG  YP +++   +++E +  E+ERF
Sbjct: 295 YVLRRILRRAVRHGYLLGFTKPFMFEVADTVAELMGKQYPYIVEKLAVLKEQIMLEEERF 354

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KT+  G+ L +  L +       +G+VAFKLYDT G PLD+ +D+L  + L+ +D+ +F
Sbjct: 355 FKTIASGIELFNEELKNT--KGTFSGEVAFKLYDTFGFPLDLTEDMLREKNLS-LDVETF 411

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              + EQR RA+A   G G    E  + +L E +G   FIGY   +    ++        
Sbjct: 412 ETLMSEQRKRAKAAWKGSGDAHVEGDFKTLLETFGVNTFIGYAYTKAPVKIQ-------- 463

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                           + +  E V++  + QK  V+ ++TPFYAE+GGQ GDTG      
Sbjct: 464 --------------ALLGENFERVDQLHAHQKGWVLLEETPFYAESGGQCGDTGTLDDKA 509

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             L                    +  L    ++   +D +    ++ +HSATHLLH AL 
Sbjct: 510 TVLDTKKFHGLNLSHI-----ETKATLSVGDTVNALVDPERNE-IAKHHSATHLLHAALY 563

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H+SQ GS +  + LRFD +H K ++  E+  +E+ VN  +   L  +TR M+ +D
Sbjct: 564 EVLGEHISQAGSLVEHNRLRFDFSHPKAMSHEEIALVEERVNYHVFHALEGMTREMSIDD 623

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  SGA A  G KY D VRVV+      G  S   CGG HV +T  I    IV ES + A
Sbjct: 624 AKKSGAKAQFGEKYGDTVRVVNF-----GTASIEFCGGVHVDNTATIGTFVIVKESGVSA 678

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+ G  A +    Q   L+ + + +K    +V+  +E + E+ + L+   +   
Sbjct: 679 GVRRIEAVCGNAAYNLFKQQRHLLEEVEASVKNR--DVLAGIERLKEQVKTLKHEMSAL- 735

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                E+L+   I     +   ++E+ + ++K  +D L+ +  S  ++L  I K+ K  +
Sbjct: 736 ASSAKEELAVTMIGSTAVV---VAELGAGDIKERIDELKNQHDSVAVLLFQI-KDDKVLL 791

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                        A D  +  A +LGGGG GGRP  AQ+GG + +K  +A     +++ K
Sbjct: 792 AAGAKNTP---LKAGDWIKTIAPILGGGG-GGRPDFAQAGGKDASKLGEAKDAALAYVTK 847


>gi|299144219|ref|ZP_07037299.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518704|gb|EFI42443.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 874

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/911 (37%), Positives = 538/911 (59%), Gaps = 52/911 (5%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+    IR+ +L FF+   H +LPS SLIP ND +L+   +GM P K  FTG+  P  
Sbjct: 1   MKNLKLHEIRSLYLNFFESKQHLMLPSFSLIPKNDKSLLLIGAGMAPMKKYFTGELTPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKCVR G    D++NVG+T+RH TFFEMLGNFSFG YFK  AI  AW+ LT++ 
Sbjct: 61  RRVTTCQKCVRTG----DIENVGKTDRHATFFEMLGNFSFGDYFKREAITWAWEFLTEQI 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ +  L++TVY ED+EAF++W +   +  ++I+++  +DNFW + E GP GPCSEI+ D
Sbjct: 117 EISKDDLWVTVYHEDDEAFRIWNEEIKVPKERIVKLGKDDNFWEL-EVGPSGPCSEIYVD 175

Query: 179 QGECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G        + +R+IE+WNLVF QF++        L   +IDTGMGLER+ATV
Sbjct: 176 RGEAYGCGDKNCKPGCDCDRFIEVWNLVFTQFDKDESGVYHPLKNPNIDTGMGLERLATV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   N ++ID  + +I+  E+++G KYE +     + RVI DH+R+ +F+I+D I P+N
Sbjct: 236 VQHTNNIFEIDAIQDIIREIEKISGYKYETDKKLDESVRVITDHIRAMTFMISDTIRPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG-SAYPELIQAKLLIEETLRS 353
           EGRGYVLRR +RRA  + R+LG  +  +  L   +    G   YPELI+ +  I+  +++
Sbjct: 296 EGRGYVLRRFIRRAARHGRILGIKKSFLSELSDLIINSWGADYYPELIENRDNIKSVIKA 355

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F +T+++G+ +L+  +  L +   +IL+G+ AFKLYDT+G P+D+  +IL      
Sbjct: 356 EEEKFLETIEQGMSMLESHILDLKEKKLDILDGEYAFKLYDTYGFPVDLTAEILDE-NSI 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F++ ++ QR RARA      +            +    +F+GY+          
Sbjct: 415 KLDRDGFDKNMDAQRKRARAARDDSDNIGWGSHDNEKIYEGLKNEFVGYE---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         +   + +  +V+  E+V++   G++  ++ D+TPFYAE+GGQ GDT
Sbjct: 465 -------------KDECKANIIELVKLNELVDKLTKGERGIIILDKTPFYAESGGQAGDT 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D  ++++ D +K  +G+ +H   VE GI+     +   ID   R  +  NHS TH
Sbjct: 512 GIIESDKFKIKVIDTKKNVKGLHLHMVEVEEGIVEKSE-VSAKIDVIRRFNIRRNHSVTH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +  + +RFD TH + I   +L+ IED VN  I + LPV T
Sbjct: 571 LLHKALKEVLGNHVNQAGSEVLDNRMRFDFTHFEAIDKEDLQKIEDRVNQKIFEALPVKT 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I N EDA   GA  L   KY+  VRVV++     G +S  LCGGTHVS+T EI +  I+
Sbjct: 631 TITNPEDAYKLGAVGLFEEKYSSVVRVVTM-----GDYSMELCGGTHVSNTSEISMFKII 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+ I +G+RRIE+ITG    S+L   +      AS LK ++ +++ +++ + E  +  +
Sbjct: 686 SENGISSGVRRIESITGPAVYSYLNNLENLRDESASTLKSNKSDIIQKIKLLTENVKAYE 745

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + KL+   +++S       KI  +N++++  +EVD   L+++ D +++K+ S +++
Sbjct: 746 KQIEELKLKTAKDEVSEIIKNVKKINSINYVTYRFNEVDVNTLRNLADEVREKVGS-VVV 804

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L     + K + +  V++DL+  + +A ++ +  AKV GGGG GGRP MA +GG + +K 
Sbjct: 805 LFATEIDDKVNFVCAVSQDLVKQKISAGNIVKEVAKVTGGGG-GGRPDMATAGGKDASKI 863

Query: 886 DQAIAGVASFL 896
           D A+  + + L
Sbjct: 864 DLALEEIKNIL 874


>gi|314936266|ref|ZP_07843613.1| alanine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313654885|gb|EFS18630.1| alanine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 876

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/914 (36%), Positives = 502/914 (54%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASDIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA++LW +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDVEAYRLWHENIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF ++          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQNDPAEEMYPGGENERYLEVWNLVFSEYNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I+  E ++G KY  NN   V  +VI DH+R+ SF I+DG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIIEEVEHISGKKYLENNEQDVAFKVIADHIRTISFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKSDFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL  G+ +L+ +++   +    +NG  AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLQEGVSILNQLITQAKESTHQINGSDAFKLYDTYGFPIELTEELASQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D+ +F   +E+QR+RAR       S   +     LK     +QF+GY+        
Sbjct: 414 IT-VDMATFEAEMEQQRTRAREARQSSQSMQVQSDV--LKNINTKSQFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               +I+  ++  G+ V  A +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 467 -------------------QTILTDLIYNGKTVTSAEAGETVYFILKETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + + +V K   G  +H  IV+ G +     +  T++ + R+ +  NHSA
Sbjct: 508 DKGTVGNDQFEIAVQEVTKAPNGQNLHQGIVQFGQVSVNSHVDATVNKEERKDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV+Q GS +  + LRFD +H  P+T  E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKEILGEHVNQAGSLVESERLRFDFSHFGPMTKEEIDQVERRVNEEIWRGISV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M  ++A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 HIQEMPIQEAKEMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVDNTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +      K  S+   LKV     V  +V +I E  +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYFEDIQNKFNSVKEQLKVKSDKQVYDKVVQIQENEK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L     +R      L++   +     I     ++  +   + KE++  MD  + K Q  
Sbjct: 743 QLNKQLEQRNKEITSLKMGNIEDQVEMINGFKVLATEVEVSNPKEIRQTMDDFKSKKQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L G   E K S++  V ++L  +  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILAGHVGE-KVSLIAAVPKELTSQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              +++  +  ++K
Sbjct: 861 NISESLRFIKDYIK 874


>gi|239978415|ref|ZP_04700939.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291450311|ref|ZP_06589701.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291353260|gb|EFE80162.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 890

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/923 (35%), Positives = 502/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+  P     
Sbjct: 1   MESAEIRRRWLRFFEERGHAVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEATPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTTSQEQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA  +W++  G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYLDDDEAETIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   +++   P        +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEDKENFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ+  N Y+ID  + +I  + ++TG++Y  +  + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQDVRNLYEIDTSRIVIDKATELTGVQYGADQASDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPELI  +  I 
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAVRNMRLLGATGPVVAELVDTVIESMGQQYPELITERKRIL 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +LD  +  +      +L+GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKAAGSTVLSGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  GAT F GY    G
Sbjct: 415 EQGLS-VDEPGFRRLMKEQRERAKADARAKKTGHADLSAYREVADAAGATDFTGYLATEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  ++  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTVVGLLVDGVSSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG     +G  +++ DVQK   G+ VH  +V+ G +         ID   RR ++
Sbjct: 511 GQIADTGRIRFDNGAVVEVRDVQKPVPGVHVHKGVVQVGEVTVGSPAYAAIDVGRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      +  A L  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPGAVLTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M+ +DA   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + ++ +    + + +               +     ++  +     + +L+ ++  ++ 
Sbjct: 746 GKLKEAEKEIERFRAEKVLQAAAGLAAGAQDVRGTALVTGRVPDGTGADDLRKLVLDVRG 805

Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      ++ L  ++ ++  +V+            A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIPADRPAVVALFTVANDRPLTVVATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N    D+A++ V   + +
Sbjct: 865 QGGGQNPQAIDEAVSAVERQVAE 887


>gi|329957545|ref|ZP_08298020.1| alanine--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328522422|gb|EGF49531.1| alanine--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 873

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/921 (35%), Positives = 487/921 (52%), Gaps = 73/921 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G  Y       +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIGDMSGTAYGKNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLQE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  L+  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHLEAPLMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS ++P+ LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHVEQKGSLVSPESLRFDFSHFQKVTDEEIRRVEHIVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFSS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    L    + ++ L +    +  ++ G + +
Sbjct: 674 GNIGMIKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAP-DLSGAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       K K     E L  +  +I  V  +    + + +  +K++   L+
Sbjct: 733 YIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKVIKFCAAMIPADAVKNIAFQLR 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 851

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG N +  + A+  V     
Sbjct: 852 AGGKNPDGLNAAVEKVIELAN 872


>gi|329121068|ref|ZP_08249699.1| alanine--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|327471230|gb|EGF16684.1| alanine--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 885

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/908 (34%), Positives = 500/908 (55%), Gaps = 55/908 (6%)

Query: 2   SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + IR  +L FF+ K  H  L S  LIP +DP+L+   +GM P K  FTG+ +P    
Sbjct: 17  MKGNDIREAYLSFFEEKKNHLRLKSFPLIPKDDPSLLLIGAGMAPMKPYFTGKVEPPCHR 76

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   +
Sbjct: 77  ITTSQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWAWEFLTEVLKM 132

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+T++ +D++A+  W K  G++ + I R+   DNFW + E GPCGP SEIFFDQG
Sbjct: 133 DKERLYVTIFPDDQDAYNYWHKNMGVAENHIYRL--EDNFWEIGE-GPCGPDSEIFFDQG 189

Query: 181 ECIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E            +G+R++EIWNLVF QF++Q       L K +IDTG GLER+A V+Q+
Sbjct: 190 ESFGTDPANQMGGDGDRFLEIWNLVFSQFDRQKDGTYLPLAKKNIDTGAGLERLAAVMQQ 249

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K NN++ DLF  +I  + +++G  Y  + ++ V  +VI DH R+ + +I+DG+LP+NEGR
Sbjct: 250 KKNNFESDLFFPIISEASKLSGAVYGVKESDDVALKVISDHARAITNMISDGVLPSNEGR 309

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + +L+G  +  M  ++  +   M   YPEL + +  I++    E+ER
Sbjct: 310 GYVLRRVLRRAIRFGKLIGIEKQFMGRMIDVVVDMMKPEYPELYEKRDFIKKVASVEEER 369

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL+ G  LL  ++    K  I  L+G+  FKLYDT+G P ++  +I    G++ ID 
Sbjct: 370 FQSTLNAGTELLSEMIEDSKKKHINKLSGEYVFKLYDTYGFPWELTDEIAKEEGMS-IDK 428

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  ++ +Q+ RAR   + + +                              +  D   
Sbjct: 429 EGFIISMNKQKERARNARVKISAKV----------------------------LTPDTTK 460

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L  K        V + +  + + GE +  A  G+ + V+    PF+AE GGQ+GD G   
Sbjct: 461 LDAKNLTVKDEDVDTTIVMLGKNGEEILSATDGEDLVVILKNNPFHAEGGGQMGDIGILR 520

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++ + +K  +GI      +  G +     + + +D   R  L+ NH+ THLLH 
Sbjct: 521 NSSGVFEVHNTKKLPDGIVYLIGTITEGKISVNDIVEVKVDRVRRAALAKNHTGTHLLHA 580

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG   +Q GS + PD LRFD T ++P+T+ ++  +E  VN+ I ++L + T+ + 
Sbjct: 581 ALRQVLGKQATQAGSLVAPDHLRFDFTWNEPLTAKQINDVEKLVNEKILESLTLTTKEVP 640

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  +GA AL G KY   VR+V +     G  S  LCGG+H  +TGE+    I+SES 
Sbjct: 641 LEEARKAGALALFGEKYGKIVRMVRI-----GDFSLELCGGSHTHTTGEVGSFRIISESG 695

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRI A+TG  A   ++   + +++ A  LK  +  ++ +++++  + +K +    
Sbjct: 696 IGSGLRRIVALTGISAYKAMVSDRKLIENSAVLLKCKKEEILNKIDKLNGDLKKAEHDIL 755

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K K +    +LS           ++F +      +  EL+ + D ++ K+  G  +L  +
Sbjct: 756 KLKNEQAKGELSSLMSDIKNKNGISFFASTAHADNINELRKIADMIKDKLPKGAFVLSSV 815

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S   K + + + +++ ++   +   +    AK+  GG GGG+P +AQ+GG + +K + AI
Sbjct: 816 SN-GKVNFVGMASKEAVEAGIHMGKVVSQVAKICNGG-GGGKPTVAQAGGKDISKVEDAI 873

Query: 890 AGVASFLK 897
                 ++
Sbjct: 874 KESEKIIE 881


>gi|325570263|ref|ZP_08146129.1| alanine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325156746|gb|EGC68920.1| alanine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 880

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/918 (36%), Positives = 501/918 (54%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRMTNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL+ + I+ I   DNFW +   GPCGP SEIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWAEEVGLTPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G                 E ERY+EIWNLVF +F  Q       LP  +IDTGMGLE
Sbjct: 174 YDRGPEFNDVAEDDPENYPGGENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT---GMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q    N++ DLF  +I A   ++            ++ +VI DH+R+ SF I D
Sbjct: 234 RMVSIVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIDAAFLYKLVPIVGEIMESYYPEVLEQQEFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V++       + L G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRNEEERFHETINEGLDILNQVIAQVKADNQDTLAGQDIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F Q ++ QR+RARA      S   +     L +    ++F+GYD L   
Sbjct: 414 DEGLK-VDHQGFEQEMDAQRARARAARQTELSMGVQSAL--LTDIKVDSRFVGYDSLE-- 468

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 +S +  I+Q   + +   +G+  +++F +TPFYAE GG
Sbjct: 469 ---------------------ANSELLVIIQDEALHDSVSTGE-AKLIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ DTG  + +   +       KKA      H    +  L+  ++  L +D   R ++  
Sbjct: 507 QVADTGTIVAEDGTIVAEVTDVKKAPNGQFLHTATVKAPLQEGVNYFLQVDQHRRNKIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LGSH +Q GS + P  LRFD +H   +TS EL  +E  VN  I +
Sbjct: 567 NHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQIVNQKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LPVVT   + + A   GA AL G KY   VRVV+V        S  LCGGTHV++T +I
Sbjct: 627 ALPVVTIETDIDTAKGMGAMALFGEKYGHDVRVVNVA-----DWSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T Q A + L  ++ +LK++A  +K      VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSQEAYTLLHEEETQLKAIAGIVKSAQLKEVVAKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + R+LQ  +     +L  +          ++  +  ++  ++  D  +L+ + D  ++K
Sbjct: 742 AQLRELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I++L   + + K ++L  + +        A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 DHSDILVLA-TANDGKVNLLAAMNKVANEKGLKAGDLIKEIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+   A++L
Sbjct: 860 GKNPEGITAALETAAAWL 877


>gi|313891768|ref|ZP_07825373.1| alanine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|313119762|gb|EFR42949.1| alanine--tRNA ligase [Dialister microaerophilus UPII 345-E]
          Length = 869

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/908 (34%), Positives = 499/908 (54%), Gaps = 55/908 (6%)

Query: 2   SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + IR  +L FF+ K  H  L S  LIP +DP+L+   +GM P K  FTG+ +P    
Sbjct: 1   MKGNDIREAYLSFFEEKKNHLRLKSFPLIPKDDPSLLLIGAGMAPMKPYFTGKVEPPCHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   +
Sbjct: 61  ITTSQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWAWEFLTEVLKM 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+T++ +D++A+  W K  G++ + I R+   DNFW + E GPCGP SEIFFDQG
Sbjct: 117 DKERLYVTIFPDDQDAYNYWHKNMGVAENHIYRL--EDNFWEIGE-GPCGPDSEIFFDQG 173

Query: 181 ECIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E            +G+R++EIWNLVF QF++Q       L K +IDTG GLER+A V+Q+
Sbjct: 174 ESFGTDPANQMGGDGDRFLEIWNLVFSQFDRQKDGTYLPLVKKNIDTGAGLERLAAVMQQ 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K NN++ DLF  +I  + +++G  Y  + ++ V  +VI DH R+ + +I+DG+LP+NEGR
Sbjct: 234 KKNNFESDLFFPIISEASKLSGAVYGVKESDDVALKVISDHARAITNMISDGVLPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + +L+G  +  M  ++  +   M   YPEL + +  I++    E+ER
Sbjct: 294 GYVLRRVLRRAIRFGKLIGIEKQFMGRMIDVVVDMMKPEYPELYEKRDFIKKVASVEEER 353

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL+ G  LL  ++    K  I  L+G+  FKLYDT+G P ++  +I    G++ ID 
Sbjct: 354 FQSTLNAGTELLSEMIEDSKKKHINKLSGEYVFKLYDTYGFPWELTDEIAKEEGMS-IDK 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  ++ +Q+ RAR   + + +                              +  D   
Sbjct: 413 EGFIISMNKQKERARNARVKISAKV----------------------------LTPDTTK 444

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L  K        V + +  + + GE +  A  G+ + V+    PF+AE GGQ+GD G   
Sbjct: 445 LDAKNLTVKDEDVDTTIVMLGKNGEEIVSATDGEDLVVILKNNPFHAEGGGQMGDIGILR 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++ + +K  +GI      +  G +     + + +D   R  L+ NH+ THLLH 
Sbjct: 505 NSSGVFEVHNTKKLPDGIVYLIGTITEGKISVNDMVEVKVDRVRRAALAKNHTGTHLLHA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG   +Q GS + PD LRFD T ++P+T+ ++  +E  VN+ I  +L + T+ + 
Sbjct: 565 ALRQVLGKQATQAGSLVAPDHLRFDFTWNEPLTAKQINDVEKLVNEKILGSLTLTTKEVP 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  +GA AL G KY   VR+V +     G  S  LCGG+H  +TGE+    I+SES 
Sbjct: 625 LEEARKAGALALFGEKYGKIVRMVRI-----GDFSLELCGGSHTHTTGEVGSFRIISESG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRI A+TG  A   ++   + +++ A  LK  +  ++ +++++  + +K +    
Sbjct: 680 IGSGLRRIVALTGISAYEAMVNDRKLIENSAVLLKCKKEEILNKIDKLNGDLKKAEHDII 739

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K K +    +LS           ++F +      +  EL+ + D ++ K+  G  +L  +
Sbjct: 740 KLKNEQAKGELSSLMSDIKNKNGISFFASTAHADNINELRKIADMIKDKLPKGAFVLSSV 799

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S   K + + + +++ ++   +   +    AK+  GG GGG+P +AQ+GG + +K + AI
Sbjct: 800 SN-GKVNFVGMASKEAVEAGIHMGKVVSQVAKICNGG-GGGKPTVAQAGGKDISKVEDAI 857

Query: 890 AGVASFLK 897
                 ++
Sbjct: 858 KESEKIIE 865


>gi|228475198|ref|ZP_04059924.1| alanine--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270809|gb|EEK12211.1| alanine--tRNA ligase [Staphylococcus hominis SK119]
          Length = 876

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/914 (36%), Positives = 501/914 (54%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASDIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA++LW +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDVEAYRLWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF ++          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQNDPAEEMYPGGENERYLEVWNLVFSEYNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I+  E ++G KY  NN   V  +VI DH+R+ SF I+DG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIIEEVEHISGKKYLENNEQDVAFKVIADHIRTISFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKSDFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL  G+ +L+ +++   +    +NG  AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLQEGVSILNQLITQAKESTHQINGSDAFKLYDTYGFPIELTEELASQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D+ +F   +E+QR+RAR       S   +     LK     +QF+GY+        
Sbjct: 414 IT-VDMATFEAEMEQQRTRAREARQSSQSMQVQSDV--LKNINTKSQFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               +I+  ++  G+ V  A +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 467 -------------------QTILTDLIYNGKTVTSAEAGETVYFILKETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + + +V K   G  +H  IV+ G +     +   ++ + R+ +  NHSA
Sbjct: 508 DKGTVGNDQFAIAVQEVTKAPNGQNLHQGIVQFGQVSVNSHVDAAVNKEERKDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV+Q GS +  + LRFD +H  P+T  E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKEILGEHVNQAGSLVESERLRFDFSHFGPMTEEEIDQVERRVNEEIWRGISV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M  ++A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 HIQEMPIQEAKEMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVDNTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +      K  S+   LKV     V  +V +I E  +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYFEDIQNKFNSVKEQLKVKSDKQVYDKVVQIQENEK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L     +R      L++   +     I     ++  +   + KE++  MD  + K Q  
Sbjct: 743 QLNKQLEQRNKEITSLKMGNIEDQVEMINGFKVLATEVEVSNPKEIRQTMDDFKSKKQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L G   E K S++  V ++L  +  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILAGHVGE-KVSLIAAVPKELTSQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              +++  +  ++K
Sbjct: 861 NISESLRFIKDYIK 874


>gi|224418366|ref|ZP_03656372.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253827685|ref|ZP_04870570.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313141896|ref|ZP_07804089.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253511091|gb|EES89750.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313130927|gb|EFR48544.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 853

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/901 (37%), Positives = 508/901 (56%), Gaps = 58/901 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FLEFFQ  GH++  S  L+P +DPTL+FTN+GMV FK+IFTG+       
Sbjct: 1   MK--KDVRALFLEFFQSKGHKIYESMPLVP-DDPTLLFTNAGMVQFKDIFTGKVPTPSPN 57

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             T+ Q C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFK+ AI  AW+ +T+   
Sbjct: 58  IATSAQLCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEVLG 117

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             +  LY+T+++ D+EAF+LWK+   + +++I R+   DNFW M +TGPCGPCSEIF DQ
Sbjct: 118 FSKEVLYVTIHESDDEAFELWKE--HIDSNRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQ 175

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G E   G       +G+R++EIWNLVFMQ+E+  +     LPK SIDTGMGLER+  +L+
Sbjct: 176 GAEKFNGPEDYFGGDGDRFLEIWNLVFMQYERDIEGNLKPLPKPSIDTGMGLERVMALLE 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K++N+D  LF  LI   E++ G KY   +  + RVI DH R+ +FL+A G+    EGRG
Sbjct: 236 GKSSNFDSSLFMPLIAKVEEIVGQKYFYESGASFRVIADHARAVAFLLAQGVNFDKEGRG 295

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +  LLG  +P +  +L ++C  MGS Y  L + K +I+   ++E+ERF
Sbjct: 296 YVLRRILRRAVRHGYLLGMRKPFVYEVLESVCENMGSHYHYLKEKKEIIKTQCKAEEERF 355

Query: 359 GKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            +TL+ G+ L +    VL       + +G++AFKLYDT+G PLD+ QD+L   G  G+DI
Sbjct: 356 FETLENGMNLFNKELEVLKKEKSKALFSGEIAFKLYDTYGFPLDLTQDMLRENGF-GVDI 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            SF   +++Q+ +A+A+  G G    E  + +L  K+G   FIGY+              
Sbjct: 415 DSFEVCMQKQKEQAKANWKGSGDSIQEGDFKTLLSKFGENVFIGYECAES---------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + A++ +     + + G K  V+FD+TP Y ++GG +GD G  +
Sbjct: 465 -------------KSKILALLDENFKEVKTLQG-KGYVMFDKTPLYPQSGGPIGDKGRIL 510

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +      KK  G+ +      +  L     + + +      +++ +HSATHLLH 
Sbjct: 511 QQNEIVATITDTKKYFGLNISTLETLK-PLEIGQEVWIEVSKDR-LEIAKHHSATHLLHK 568

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H++Q GS +  + LRFD +H K ++  EL  +E  VN+ I +  P +  +M 
Sbjct: 569 ALREVLGDHITQAGSLVESNRLRFDFSHPKALSYEELNKVELLVNEKILKANPQICEVMG 628

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A + GA AL G KY + VRV+S         S  LCGG HV +T  I   YIV ES 
Sbjct: 629 IEAAKSKGAMALFGEKYGENVRVISFGD------SIELCGGIHVENTANIGSFYIVKESG 682

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+ G+ A  +      ++ S    LK    N++  +++  E+ + L+    
Sbjct: 683 VSSGVRRIEAVCGKAAYYYGKEALSEIASAKEMLKTQ--NLLEGIKKQKEQIKALKSQGG 740

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
             K ++N       KI ++N +S +I      ++K ++D ++ K +  +I+L+    ++ 
Sbjct: 741 NSKNEINNL-----KIQEINGISMVIQGFSGSDIKEIIDEIKNKYEKVVILLI----DES 791

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +   V         A    +  AKV+ GG GGGR   A +GG   +K ++A+     F
Sbjct: 792 GRIAAGVKNAP---IKAGIWVKEVAKVM-GGNGGGRDDFATAGGKALDKIEEALKKAKEF 847

Query: 896 L 896
           +
Sbjct: 848 V 848


>gi|224538063|ref|ZP_03678602.1| hypothetical protein BACCELL_02953 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520311|gb|EEF89416.1| hypothetical protein BACCELL_02953 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 872

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 490/919 (53%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRNSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVDVLKI 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKNLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRPEEEKAQIPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ+KT+NYD D+F+ +++A   +TG KY  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQDKTSNYDTDVFQPILKAIGNMTGKKYGEDEKSDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRQAFMYKLLPVLIENMGEAYPELEAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LISKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPAHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  EDA   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEDAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    +   ++ LK L +    +  ++ G + +
Sbjct: 674 GNIGMIKIVSESSVAAGVRRIEAYTGARVEELMDTIEDTLKDLKALFNNAP-DLAGTIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       + K     E L  +  +I  +  +      + ++ +K++   L+
Sbjct: 733 YIEENAGLKKQMEDFMREKEAQIKERLLKNMQEIHGIKVIKICAP-IPAESIKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLCFVAGTINEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + AI  V   
Sbjct: 851 AGGKNIDGLNAAIEKVLEL 869


>gi|189345755|ref|YP_001942284.1| alanyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|189339902|gb|ACD89305.1| alanyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 888

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/924 (35%), Positives = 501/924 (54%), Gaps = 68/924 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FL+FF    H+++ S+ +IP +DPTL+FTN+GM  FK++F G+    Y   
Sbjct: 1   MKSREIRQSFLDFFAGKEHKIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGKGSRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAISWAWELLTSVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TV+ +D+E+F+LW+ ++ +  D I+R    DNFW M E+GPCGPCSEI  D  E
Sbjct: 121 KERLYATVFRDDDESFQLWQTVTDIPHDHILRFGEKDNFWEMGESGPCGPCSEIHIDLTE 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G    +    R IE+WNLVF+Q+ +Q       LP+  +DTGMG ER+  V+Q K 
Sbjct: 181 D-GSGKSLVNVGDYRVIELWNLVFIQYNRQGDGRLEPLPQRHVDTGMGFERVCAVMQGKG 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F+ L     ++TG+ Y    +    +  RVI DH R+ +F ++DG +P+NEGR
Sbjct: 240 SNYDTDVFRPLFDRITEITGVVYKATMDDPCDIAMRVIADHARTLTFALSDGAMPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y++ LG +EP++  L+  L   MG  +PEL++ +  +   +R+E+E 
Sbjct: 300 GYVLRRILRRALRYSKTLGCSEPILHQLVGTLAVSMGEEFPELVKQQETVSRIVRAEEES 359

Query: 358 FGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ + + V+  +       + GD AF+LYDT G PLD+ + +    G   +D 
Sbjct: 360 FLATLDRGIEIFNEVIAGARAAGAAAITGDDAFRLYDTFGFPLDLTRLMAAEAGFE-VDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++EQ++RAR           +   +    +   + F GYD L     +     +
Sbjct: 419 PGFEHCMQEQKTRARQDRKDKRQLQEDGGEWMWFSEERTSVFTGYDSLEELSSIAGVSML 478

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                             +V +V D+TPFYAE+GGQ GD G   
Sbjct: 479 P--------------------------------DRVLLVLDRTPFYAESGGQSGDCGWIE 506

Query: 536 GDGIRLQITDVQKKAEGIFVH------------HAIVERGILRTEMSLVLTIDYQNRRQL 583
               RL+++D +K  + I                   +      +++   ++D  NR+  
Sbjct: 507 TAEYRLKVSDTRKDGDAIVHVVTEAHDTARDSAIDPADVSFDGGKLACRASVDRANRQGT 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  ILG HV Q GS ++ + LRFD +H   +TS EL+S+E  VN+ I
Sbjct: 567 ERNHTATHLLHAALRRILGQHVQQKGSFVSAERLRFDFSHFSKLTSGELESVESEVNEQI 626

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
                V+    +  ++A+  GA A  G KY DRVRVV +        S  LCGGTHV S 
Sbjct: 627 RSAETVIKHQDVPYDEALGKGALAFFGDKYADRVRVVEIPG-----LSIELCGGTHVDSI 681

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVE 761
           G+I L  IVSESS+ +G+RRIEA+TG+ A   +  +  +L+ +   LK+     V  ++ 
Sbjct: 682 GQIGLFKIVSESSVASGVRRIEALTGKAAEQLMWKEYRELQEIRHMLKLKAEEPVTAKIV 741

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           E+ E  ++L+ +  + +     + L     +  ++  +  M+ ++  VD++ L+    AL
Sbjct: 742 ELAESKKELEKLLQEYRSSALADILLHALDASEEVNGIRIMARMLDHVDAEALRQATLAL 801

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874
           ++K+     +L  +  E K S++    +  +     +A  L R +AK + GG GGG+P  
Sbjct: 802 REKVAGSAGILCTVD-EGKVSLIAFAGDRAVRDFGIDAGKLVREAAKNVQGG-GGGKPEF 859

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           A +GG N    ++A     + +++
Sbjct: 860 ATAGGKNPEGIEKAFEVFVAAVRE 883


>gi|294811565|ref|ZP_06770208.1| Alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|326440050|ref|ZP_08214784.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294324164|gb|EFG05807.1| Alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 889

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/923 (35%), Positives = 508/923 (55%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLINAGMVPFKPYFLGETKPPFPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+L+W+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLSWELLTTPVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G         +  +  RY+EIWNLVFMQ+E+   + +   P        +IDTG+GL
Sbjct: 176 YDRGPAFGAEGGPAVNDE-RYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG++Y  +  + V+ RVI DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHASDVSLRVIADHIRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVAALVDVVVRTMGEQYPELVTDRTRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+ RF KTL+ G  +L+G +  +      +L GD AF L+DT G P+D+  +I  
Sbjct: 355 AVALAEEARFLKTLNAGTNVLEGAITEAKATGGTVLAGDKAFLLHDTWGFPIDLTLEIAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR++A+A +    +G  +   +  + +  GAT+F GY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRAKAKADAKAKKTGHADLSAYREVADGSGATEFTGYAATEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  +++ DVQ+   G+ VH   V+ G +    S    ID + RR ++
Sbjct: 511 GQLADQGRIKLDSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +  + L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGAPSAVPGSVLTDVEQRINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVQAEVMSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQK 818
            + +  +    K + +               I  V  +S  + +   + +L+ ++  ++ 
Sbjct: 746 AKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIHGVALVSGRVEDGTSADDLRRLVLDVRG 805

Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      ++ L  ++  +  +V+            A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIPGDRPAVVALFTVANGRPLTVIATNEAGRERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N     +AIA V   + +
Sbjct: 865 QGGGQNPEAVGEAIAAVERLVAE 887


>gi|160891225|ref|ZP_02072228.1| hypothetical protein BACUNI_03673 [Bacteroides uniformis ATCC 8492]
 gi|317481112|ref|ZP_07940189.1| tRNA synthetase class II [Bacteroides sp. 4_1_36]
 gi|156859446|gb|EDO52877.1| hypothetical protein BACUNI_03673 [Bacteroides uniformis ATCC 8492]
 gi|316902713|gb|EFV24590.1| tRNA synthetase class II [Bacteroides sp. 4_1_36]
          Length = 872

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 489/919 (53%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSAEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G KY  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGKKYGEDEKSDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG+AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGAAYPELDAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LL+  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKAAGKNEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVVDTKKENNLPIHI---TKKLPEHMEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    +   ++ L  L +    +  ++ G + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEELMNTIEDTLHDLKALFNNAP-DLAGTIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  ++  V  +      + ++ +K++   L+
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAQLKERLLKNVQEVNGVKVIKFCAP-LPAETVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GQITENLFFVAGTEAEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + AI  V   
Sbjct: 851 AGGKNADGLNAAIDKVLEL 869


>gi|254519282|ref|ZP_05131338.1| alanyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226913031|gb|EEH98232.1| alanyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 879

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/912 (36%), Positives = 525/912 (57%), Gaps = 52/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF+   H  L S  L+P ND +L+  N+GM P K  FTG ++P  + +
Sbjct: 4   MGTNELREAYLKFFESKDHLRLESFPLVPKNDKSLLLINAGMAPLKPYFTGLQEPPRKRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFKE  I  AW+ +T+   + 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEIIPWAWEFITETLQIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+T+Y ED+EA+ +W K + +   +I R+  +DNFW +   GPCGPC+EI +D+GE
Sbjct: 120 KDKLYVTIYLEDDEAYDIWCKKTDVDPKRIFRLGKDDNFWEIG-VGPCGPCTEIHYDRGE 178

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                      + + +R +E WNLVF QF++  +     L   +IDTGMGLER+AT++Q 
Sbjct: 179 GAITNVEDFVKASDEDRVVEFWNLVFTQFDKDEEGNYNRLANPNIDTGMGLERIATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N ++ID  K+++Q   +++G+KY  +    ++ R+I DH++S + LI+DG+ P+NEGR
Sbjct: 239 VDNIFEIDTVKNILQKVSELSGVKYGEDKLKDISLRIITDHVKSVTMLISDGVQPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  ++ ++      AYP LI++K  IE  +  E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGIKGLFLTDIVESVVENYSGAYPMLIESKEYIERIVSLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +    ++ L G+ AFKLYDT+G P+++ ++IL  +G+  +D 
Sbjct: 359 FNETIDSGMNILNDYIEEMEASNEKTLKGEKAFKLYDTYGFPIELTEEILEEKGM-NVDY 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F + ++EQR RAR+         +++   +  +    T+FIGYD +            
Sbjct: 418 EAFRKEMDEQRQRARSARGESSYMGSDENPINKIDASINTEFIGYDNIE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V+S +  +      V+E   G+K  +V D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------VNSKILVLANDNNFVDELSKGEKGYIVTDKTPFYAEMGGQVGDKGIIK 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                  + D +K   G  +H+  V  G ++      L ID   R  ++ NH+ATH+LH 
Sbjct: 515 TASGEAYVYDTKKNVGGKTIHYVKVVEGTIKINEEANLKIDVLRRNNIAKNHTATHMLHE 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV+Q GS +  + LRFD  H + +T  E++ IE+ VN  I +   V T +M 
Sbjct: 575 ALKQVVGKHVNQAGSYVDDERLRFDFAHFQGLTEEEIEKIEELVNKKIMEVFNVDTNLMT 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A  SGA AL   KY D+VRVVSV     G  S  LCGGTHV+++GEI L  I++E+ 
Sbjct: 635 LDEAKESGAMALFDDKYGDKVRVVSV-----GEFSKELCGGTHVNNSGEIGLFKIINEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA++G  A  ++  +   LK   S LK S+ +V+ ++     E ++ +   +
Sbjct: 690 VAAGIRRIEAVSGLNAIKYMEEKQRLLKEACSALKCSEKDVLKKIASQGAEIKEKEKEIS 749

Query: 776 KRKLQLN--VEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L   VED    S  ++  +  +++ +  +D   L+ + D ++ K+ SG+++L+  
Sbjct: 750 ELKSKLTCGVEDDILSSVKEVNGIKVVAYGLEGIDGNALRDLGDKMRSKLSSGVVVLLS- 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +   K +V+ + T+D L    N   + +  A V+GGGG GGRP MAQ+GG N      AI
Sbjct: 809 NVGGKVNVVSMATKDVLEKGINCGKIIKEVAAVVGGGG-GGRPDMAQAGGKNPENIKSAI 867

Query: 890 AG----VASFLK 897
                 V S +K
Sbjct: 868 EKTYLVVESLIK 879


>gi|270294506|ref|ZP_06200708.1| alanyl-tRNA synthetase [Bacteroides sp. D20]
 gi|270275973|gb|EFA21833.1| alanyl-tRNA synthetase [Bacteroides sp. D20]
          Length = 872

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 489/919 (53%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSAEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVSGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G KY  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGKKYGEDEKSDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG+AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGAAYPELDAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LL+  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKSTGKNEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVVDTKKENNLPIHI---TKKLPEHMEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    +   ++ L  L +    +  ++ G + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEELMNTIEDTLHDLKALFNNAP-DLAGTIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  ++  V  +      + ++ +K++   L+
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAQLKERLLKNVQEVNGVKVIKFCAP-LPAETVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GQITENLFFVAGTEAEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + AI  V   
Sbjct: 851 AGGKNADGLNAAIDKVLEL 869


>gi|73662452|ref|YP_301233.1| alanyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|83305860|sp|Q49Y56|SYA_STAS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|72494967|dbj|BAE18288.1| alanyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 876

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/914 (35%), Positives = 519/914 (56%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  F+++F + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQNFIDYFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++ + LY+T++ ED+EA+++W +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMAMEPKLLYVTIHPEDKEAYRIWNEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ER++E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEDFGQDDPAEEMYPGGENERFLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q    NY+ DLF  +I   E+V+G  Y  N+   V  +VI DH+R+ +F IADG 
Sbjct: 234 MASLAQNVRTNYETDLFMPIIHEVEKVSGKTYLENDNYDVAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLDINEPFMYRLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ +++        ++G  AFKLYDT+G P+++ ++I     
Sbjct: 354 IKSEEERFHETLEEGLAILNNLVAQAKTSTHEISGKDAFKLYDTYGFPVELTEEIATQEN 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L+ ID+ +F + +++QR RAR       S   +     LK+    + F+GYD++  +   
Sbjct: 414 LS-IDMQTFEEEMQQQRDRARQARQNSQSMQVQSEV--LKKITTDSTFVGYDVMDKA--- 467

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S++  I+Q GE+VE A +G+ +  +  +TPFYA +GGQ+ 
Sbjct: 468 --------------------SVITDIIQNGELVESAEAGETIYFILRETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    +   + +T+V K   G  +H   ++ G ++    +  +++++ RR +  NHSA
Sbjct: 508 DQGTISNENFEIAVTEVTKAPNGQNLHKGEIQFGTVKKNAEVSASVNHKERRSIKKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  D LRFD +H  P+T  E+ ++E  VN+ I  ++ V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMTQEEIDTVERRVNEEIWNSIEV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M   +A   GA AL G KY + VRVV++        S  LCGG HV++T EI L  
Sbjct: 628 DIQEMPISEAKQLGAMALFGEKYGEIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L     +  ++ S +KV   + V+ ++  + +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKSAFLYLETIQSQFNAVKSQVKVKSDDQVLEKIVHMQDEEK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L     ++  ++    +        +I  +  ++  +   ++K ++  MD  + K+Q  
Sbjct: 743 ELTKQLEQKNKEVTSLKMGDITNQVEEINGLKVLATEVDVPNAKAIRETMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L+  + + K S++  V + L D+  A D+ +  A V+ GG GGGRP MAQ GG    
Sbjct: 803 VIVLIS-NIDGKVSLVATVPKALTDKVKAGDIIKNMAPVV-GGKGGGRPDMAQGGGTEPK 860

Query: 884 KADQAIAGVASFLK 897
              +++  +  ++K
Sbjct: 861 NITESLRFIKDYIK 874


>gi|228470921|ref|ZP_04055766.1| alanyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|228307318|gb|EEK16332.1| alanyl-tRNA synthetase [Porphyromonas uenonis 60-3]
          Length = 872

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/918 (36%), Positives = 496/918 (54%), Gaps = 68/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  FL+FF+++GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G ++P Y+ 
Sbjct: 1   MMTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK+ AI+ AW  LT+   L
Sbjct: 61  AADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAIEFAWTFLTERLHL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+TV+          D+EA   W + +  + D+II  +  DNFW M +TGPCGPC
Sbjct: 121 PKDRLYVTVFGGSAEEGLSRDDEAAGYWLQHT--TEDRIIDGSRKDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++    IEIWNLVFMQ++++       LP   IDTGM
Sbjct: 179 SEIHIDLRSEEERQEICGRDLVNKDHPLVIEIWNLVFMQYDRKADGHLEPLPHKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   +Q K +NYD DLF  LI+A E ++G +Y  N    +  RV+ DH+R+ +F I
Sbjct: 239 GFERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ YA   L   EP++  LLP L   MG AYPE++  + 
Sbjct: 299 ADGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGGAYPEIVAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDI 404
           LI   ++ E+E F +TL +GL LL+  +  L +D ++L+G  AF LYDT+G PLD+ + I
Sbjct: 359 LIASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  RG+  +D ++F++ ++EQ+           +      W  L E+   + F+GY+ L+
Sbjct: 419 LSERGMT-LDQVAFDKLMQEQK-----SRARQAAAVDAADWEVLDEETSESTFVGYETLQ 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +K                                +VV  +TPFYAE 
Sbjct: 473 IETHILRYRKVADKKHSY----------------------------YQVVLAETPFYAEM 504

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G  I            K+   + VH           +  L+  +  + R    
Sbjct: 505 GGQVGDKGVLIAQDGTEYPILDTKRENNLTVHIL--STLPADPKQPLIARVGAELRHLTE 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHL+HHAL  +LG+HV Q GS ++ D LRFD +H K +T  E+  +E  VN  I 
Sbjct: 563 ANHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVNAEIR 622

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + P    R +    A   GA AL G KY D VRV+          S  LCGGTHV+STG
Sbjct: 623 ADRPRDEHRNVPIAQAKEMGAMALFGEKYGDEVRVIKYGD------SVELCGGTHVASTG 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    I+SE SI AGIRRIEA+TG +A  ++   +E+L+     L      +   ++ +
Sbjct: 677 QIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPL-KALDRL 735

Query: 764 W----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                E+ + ++     +  Q+ ++ L+         +  +   + S   K V   ++++
Sbjct: 736 IAESAEQRKAIEQYTKAQAEQIALQALADQTKRGETTIVTVNKSMSSDVAKDVAGTIRER 795

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +Q   + L+G ++E K ++ ++++ DL+D+  NA  L +  A ++ GG GGG+PH A +G
Sbjct: 796 LQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNAGKLIKEVASLIKGG-GGGQPHFATAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      AI  + S +
Sbjct: 855 GRNPEGLQAAIDHIVSLI 872


>gi|167764982|ref|ZP_02437103.1| hypothetical protein BACSTE_03375 [Bacteroides stercoris ATCC
           43183]
 gi|167697651|gb|EDS14230.1| hypothetical protein BACSTE_03375 [Bacteroides stercoris ATCC
           43183]
          Length = 873

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 486/919 (52%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   +TG  Y       +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMTGATYGKNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLQE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------FQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E   +  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHLEAPFMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    L    + ++ L +    +  ++ G + +
Sbjct: 674 GNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDAFQDTMRDLKALFNNAP-DLSGTIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       K K     E L  +  ++     +    + + +  +K++   L+
Sbjct: 733 YIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEVNGTKVIKFCAAMIPADTVKNIAFQLR 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 851

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 852 AGGKNPDGLNAAVDKVLEL 870


>gi|299535706|ref|ZP_07049027.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298728906|gb|EFI69460.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 886

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/924 (36%), Positives = 510/924 (55%), Gaps = 68/924 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +LEFF++ GH   PS+ L+P NDP+L++ NSG+   K  F G+  P    +
Sbjct: 1   MKAVDIRRMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRIIPDNPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K   
Sbjct: 61  TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D   L IT++ ED+EA+ +W +  G+  +++IR+    NFW + E GP GP SEIF+D+
Sbjct: 117 FDPALLSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDR 173

Query: 180 GECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G                E ERY+EIWNLVF QF          LPK +IDTGMGLER+ +
Sbjct: 174 GVEYGSDENDPEMYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRS 281
           V+Q    N+D DLF  +I+  E+    KY+    V+               +VI DH+R+
Sbjct: 234 VVQNVPTNFDTDLFMPIIEKIEEFANRKYKRPGEVDLNEIFGSEEDINTPFKVIADHIRT 293

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G  +P M  L+P +   M   YPE+ 
Sbjct: 294 VAFAIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVT 353

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399
           +    I+  +++E+ RF +TLD GL + + V+        + + G  AF+LYDT+G P++
Sbjct: 354 EKCEFIQRVIKNEEIRFHETLDGGLAIFNEVVESQKAAGHDYIPGADAFRLYDTYGFPIE 413

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + ++     G+  +D   F +A+EEQR RARA    + S   +     L     A++F+G
Sbjct: 414 LTEEYAEEVGMK-VDHEGFEEAMEEQRERARAARQDVDSMQVQNEV--LANLTVASEFVG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L                        V++ + A++  G++ + A  GQ+  V+  +TP
Sbjct: 471 YDTL-----------------------TVNTEIAAMIVNGQVAKVASEGQEALVILAKTP 507

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE GGQ+ D+G    D     + DVQK   G  +H  +VE G +  E ++   ++  +
Sbjct: 508 FYAEMGGQIADSGTISNDSFTAVVKDVQKAPNGQPLHTVVVESGEMHVEDAVQAVVNRDD 567

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  +  NH+ATH++  AL  +LG HV+Q GS + PD LRFD +H   +T  EL+ IE  V
Sbjct: 568 RNLIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIV 627

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ +  ++ VV      ++A A GA AL G KY D VRVVS+     G +S  LCGG HV
Sbjct: 628 NEKVWDDIEVVIEEKGIDEAKAMGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHV 682

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             + EI    IVSE  I AG RRIEA+TG+ A   +  ++  L   A+ LK +  ++V +
Sbjct: 683 KRSSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEAVKEEEALLNDAAALLKANAKDIVTK 742

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMD 814
           V+ +  +Y++LQ  +     ++          +   I DV  +S  +   D+ +L+ +MD
Sbjct: 743 VQALQADYKELQRENEALSQKIANAQAGAIVDAAQTIGDVTVLSTKVEAKDNNQLRQMMD 802

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
            L+ K+   +I+L  +  + K  +   V+++L+   ++A ++ ++ A+   GG GGGRP 
Sbjct: 803 DLKAKMPKAVIVLGAVDGD-KVMLCAGVSKELVGGNYHAGNIVKMVAEAC-GGKGGGRPD 860

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MA +G  + +K D+A+  V  ++K
Sbjct: 861 MAMAGAKDASKLDEALLSVYDYVK 884


>gi|218961963|ref|YP_001741738.1| alanyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
 gi|167730620|emb|CAO81532.1| alanyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
          Length = 866

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/907 (37%), Positives = 498/907 (54%), Gaps = 55/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  F++FF   GH  +PSS +IP +DPTL+F N+GM  FK+IF GQ++  Y+ 
Sbjct: 1   MISSKEIRQQFIDFFLNRGHIFVPSSPVIPEDDPTLLFANAGMNQFKSIFLGQKEITYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDL+ VG+   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + +
Sbjct: 61  VVNSQKCIRAGGKHNDLEEVGKDGYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D EAF++WK+ + +    I      DNFW M ETGPCGPCSEI  D+G
Sbjct: 121 PKDKLYATVYKTDTEAFEIWKQETDIDPTHISYFDDKDNFWEMGETGPCGPCSEIHIDRG 180

Query: 181 ------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
                 +  PG +   +    R+IE+WNLVF+Q+ ++  +    L    +DTG G ER+A
Sbjct: 181 SSHCTRQNEPGHICKINGGCSRFIELWNLVFIQYNREADKTLSPLKNKFVDTGAGFERLA 240

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ+K +NY+ DLF  LI   E+++G+ Y     + HRVI DH+R   F +ADG  P+N
Sbjct: 241 QVLQDKNSNYETDLFMPLINKIEELSGVAYTQETGMPHRVIADHIRCLCFALADGGFPSN 300

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  Y RLLG+ EP +  L+P +  +M   + EL   +  I+  +++E
Sbjct: 301 EGRGYVLRRILRRAARYGRLLGFAEPFLHLLVPLVIEQMAHHFSELNGKEDYIKMVIKAE 360

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF KTLD GL     +   L   E+++G  AF LYDT+G P D+   +   +GL  ID
Sbjct: 361 EERFNKTLDTGLEKFREITQKLK-GEVISGSDAFILYDTYGFPPDLTAILAEEKGLK-ID 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + ++ QR RAR  S         + W         T+F+GY       +++    
Sbjct: 419 YEGFEKEMQLQRKRARKASKFTLF-VNNEDWIEFS-PVTPTEFVGYKENTVQTYIQRYA- 475

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                                               + +   QTPFYAE+GGQ+ DTG  
Sbjct: 476 ------------------------------IQEKGLILMQLAQTPFYAESGGQVSDTGKI 505

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +   L+IT+V+K+ E I  +   ++RG +     +   ID + R+ ++ NH+ATHLLH
Sbjct: 506 YNEEFELEITNVRKQDEYIIHY-GKLKRGTVN-NAPVTAEIDRERRKSIARNHTATHLLH 563

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG H  Q GS +  D LRFD  H + +T  E++ +ED VN  +  N  V T + 
Sbjct: 564 KALREVLGEHTVQKGSLVHSDYLRFDFAHFRALTLEEIRKVEDIVNQAVLDNRKVKTTVK 623

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N E+A   GA AL G KY+++VRVV VE       S  LCGGTH+SSTGEI L  I+SES
Sbjct: 624 NIEEAKKEGAIALFGEKYSEKVRVVCVEN-----FSQELCGGTHISSTGEIGLFKIISES 678

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S  AGIRRIEAITG  A   +    +KL  +++ L     N+  ++E   E+   L+   
Sbjct: 679 SSAAGIRRIEAITGISALKWVQDLQDKLSRISTLLNSPVKNIESKLEATLEQISALEREL 738

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +   + +        K  +   +       + +ELK+  + L+ K+Q  I +L  
Sbjct: 739 KSAKAKEEEKFVQELLSKATKQENYLLIKAQTEFDNLEELKTTAEQLKTKMQGTIAVLFN 798

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + ++ K ++L VV+ DL+ ++NA  +    A  L  G GGGR  +A +GG +       +
Sbjct: 799 LYQD-KLNILCVVSADLIPKYNAGKIVAKLANELK-GKGGGRTDIAMAGGKDIANLASVM 856

Query: 890 AGVASFL 896
             V   +
Sbjct: 857 EKVPEII 863


>gi|149194975|ref|ZP_01872068.1| alanyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149134896|gb|EDM23379.1| alanyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 846

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/891 (39%), Positives = 512/891 (57%), Gaps = 52/891 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL+FF+  GH++ PS+ L+P +DP+L+FTN+GMVPFK IFTG++  P     T+ 
Sbjct: 2   DIRKKFLDFFESKGHKVYPSAPLVP-DDPSLLFTNAGMVPFKPIFTGEKPAPTPPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG TNRHHT FEMLGNFSFG YFKE AI  AW+ +T+   LD+ R
Sbjct: 61  QLCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFGDYFKEEAIAYAWEFVTEVLKLDKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+IT+++ D+EA K+W+K   +S D+I+++   DNFW M +TGPCGPCSEI +DQGE   
Sbjct: 121 LWITIHESDDEAGKIWQKY--VSKDRIVKMGDKDNFWQMGDTGPCGPCSEIHYDQGEKFN 178

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   EG+R++EIWNLVFMQ+ +    +   LP+ SIDTGMGLER+  V +   +NY
Sbjct: 179 SSEDYLGGEGDRFLEIWNLVFMQYNRDESGKLTPLPRPSIDTGMGLERITAVFEGVESNY 238

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +  +FK LIQ   ++TG +Y  +    +HRVI DH+R+ SFL+A G+    EGRGYVLRR
Sbjct: 239 ETSIFKPLIQKVVEITGKEYFKDKRGASHRVIADHIRAVSFLVAQGVRFDREGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RR + +  +LG  EP M  ++  L  +M   YP L + K  I+E ++ E+ERF +T+D
Sbjct: 299 ILRRGVRHGYMLGMKEPFMYKIVDTLANQMKDNYPYLEEKKEAIKEAIKIEEERFFETID 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +G+ L    LS      I +G+VAFKLYDT+G PLD+ QD+L       +DI +F++ ++
Sbjct: 359 KGMALFKEELSKTT-GNIFSGEVAFKLYDTYGFPLDLTQDMLREVNKK-VDIETFDRLMK 416

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ+ RARA+  G G     KI     EKY   +F+GY+                      
Sbjct: 417 EQKERARANWKGSGDK---KINLKDLEKYPPNKFVGYEKTSH------------------ 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 + +KA+    E  E         V+ ++TPFYAE+GGQ+GD G    +   L+I
Sbjct: 456 -----KTKIKALF-DEEFNEVDKLNGSGWVMLEETPFYAESGGQVGDRGELRIENGELRI 509

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             V  K      + + VE+  L+    ++  +D   R  ++ +HSATHLLH AL  +LG 
Sbjct: 510 NVVDTKKFDE-RNLSKVEKAKLKVGDEVLAVVDESRRE-IAKHHSATHLLHSALRKVLGE 567

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H++Q GS +  + LRFD TH K ++  EL  IE+ VN +IA+        M+ ++A   G
Sbjct: 568 HITQAGSLVEANRLRFDFTHPKALSKEELNKIEEMVNRVIARGFEGEVSEMSIDEAKKLG 627

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRVV       G  S  LCGGTHV +T EI   YIV ES + AG+RRI
Sbjct: 628 AMALFGEKYGDIVRVVKF-----GDFSIELCGGTHVKNTSEIGSFYIVKESGVSAGVRRI 682

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G  A  +     + ++ L S  K +    + +  E  +E  K      K   Q  V
Sbjct: 683 EAVVGYSAYEYGKNYRDLVEELKSKNKTND---LDKFIEKQKEEIKKLKEEIKSLKQAAV 739

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           +++       +NF+   I   +   L+ +   L+ ++ + +  L+G +K  K + +  V+
Sbjct: 740 KEIKPINKDGINFVIERIDNAN---LREIATDLKGRVDNLVTFLIGENK-GKVNFVA-VS 794

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           +  +    A DL +  A ++ GG GGG+P  AQ GG +  + D+ I  V  
Sbjct: 795 K--VKDIKAGDLIKEFAPIV-GGKGGGKPDFAQGGGKDIERIDEVIKKVKE 842


>gi|154250174|ref|YP_001410999.1| alanyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|205830091|sp|A7HN59|SYA_FERNB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|154154110|gb|ABS61342.1| alanyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 867

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/907 (40%), Positives = 536/907 (59%), Gaps = 56/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L FF+K GH+ LPS+SLIP +DP LMFT +GMVPFK IF G+  PVY  V
Sbjct: 4   MTSDEIREAYLSFFEKKGHKRLPSASLIP-DDPQLMFTVAGMVPFKPIFWGKVDPVYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ +TK  ++ 
Sbjct: 63  TTCQKCVRT----NDIENVGRTPRHHTFFEMLGNFSFGDYFKQEAIEWAWEFVTKVLEMP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + +L+++VY+ D+EA+++W+K+ G+   KI+R++  DNFW     TGPCGPCSEIF+D G
Sbjct: 119 EEKLWVSVYEYDDEAYEIWRKL-GVPERKIVRMSKEDNFWGPAGPTGPCGPCSEIFYDTG 177

Query: 181 ECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             +P   G  P  +    RYIEIWNLVF +F Q  +     LP+ +IDTG GLER++ ++
Sbjct: 178 VEVPVPEGQDPTPANTDGRYIEIWNLVFTEFYQDEEGNLHPLPRKNIDTGAGLERISAMM 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    N+D DLFK +I++ E V  + Y+ +    V+ RVI DH+RS +F+IADG+LP+NE
Sbjct: 238 QGVYWNFDTDLFKPIIESIENVLKVSYKSDKVKDVSIRVIADHVRSVTFMIADGVLPSNE 297

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +  LLG  EP +  ++ ++  +MG  YPE+++ +  +E  ++SE+
Sbjct: 298 GRGYVLRRVLRRALRHGVLLGAKEPFLYKIVDSVVQKMGKIYPEIVEKQSFVENIVKSEE 357

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            +F   L RGL ++  ++        ++ + AFKLYDT+G P+DI++DI    G   +D 
Sbjct: 358 LKFINNLSRGLEIVQKIV---TTSGKISAEDAFKLYDTYGFPIDILRDIATENGYE-LDE 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + LEEQR R+R    G      +  + +L      T F+GYD L            
Sbjct: 414 KGFEKYLEEQRERSRKA-QGEVEFAQKTGYENL---GIETVFVGYDTLVS---------- 459

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S V  I   GE VE+A     + E++ D TPFYAE GGQ+ DTG  
Sbjct: 460 -------------ESSVLKIRVNGEFVEKAEGNDLECELILDITPFYAEKGGQVADTGVI 506

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   +  V    EGI VH      G +     +   +D   R+    NH+ATH+LH
Sbjct: 507 KSQDGLFTVEYVYSPVEGIIVHRG-KLNGKISVNEKVQSQVDEIKRKSTMRNHTATHILH 565

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS + P  LRFD TH + +T  E+  IE+ VN++I + +PVVT I 
Sbjct: 566 SALRKVLGSHVRQAGSLVEPTRLRFDFTHYQALTKDEITKIENIVNEVILKAIPVVTEIK 625

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A+  GA AL   KY D VRVV V        S  LCGGTHV +TGEI L  IVSES
Sbjct: 626 SYDEAVKEGAMALFEEKYGDFVRVVKV-----SDFSEELCGGTHVKNTGEIGLFKIVSES 680

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEAITG  +  +L   +E  + L   L+  +  +V ++++I EE + L+   
Sbjct: 681 AVSAGVRRIEAITGLNSLEYLRTDEELFEKLKLLLEAPKSEIVEKIQKILEEKKNLEKEI 740

Query: 775 AKRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + K +L   +    K+    ++ ++  ++ +V+   LK ++D +  +I+ GI++L+   
Sbjct: 741 QEIKRKLINPEEIAKKVKEYNNIKYVVSVLEDVEPDILKDLIDNISDRIK-GIVLLISKM 799

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K  V + V ++L   +NA ++A+L +KVLGGGG GG P  AQ+GG    K D+A   
Sbjct: 800 SD-KIIVTVKVPKELTQDYNAGNIAKLVSKVLGGGG-GGSPTFAQAGGKLIEKIDEATEL 857

Query: 892 VASFLKK 898
               ++K
Sbjct: 858 FEKIIRK 864


>gi|270307496|ref|YP_003329554.1| alanyl-tRNA synthetase [Dehalococcoides sp. VS]
 gi|270153388|gb|ACZ61226.1| alanyl-tRNA synthetase [Dehalococcoides sp. VS]
          Length = 876

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/905 (37%), Positives = 519/905 (57%), Gaps = 47/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    +T
Sbjct: 8   SSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC R      D+++VG    H T FEMLGNFS G YFK+ AI  AW+ +T+  ++  
Sbjct: 68  SCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNIPA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQGE 181
            RL++TVY +D+EA  LWK+  G+S  +I+R+   DNFW    ++GPCGPCSEI +D G+
Sbjct: 123 ERLWVTVYLDDDEAIALWKEQ-GVSEGRIVRLGAADNFWGPAGDSGPCGPCSEIHYDFGQ 181

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G    +   +  R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  ++Q 
Sbjct: 182 EMGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILMQS 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K N Y+ D+F  +++ + Q++G KY  +       R++ +H R  +FLIADG++P   GR
Sbjct: 242 KKNVYETDIFAPIVEKACQLSGKKYGCDTATDRALRIVSEHSRGITFLIADGVIPDKAGR 301

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + R LG  +P ++ +  A+   M   YPEL + +  + E + SE+ R
Sbjct: 302 GYVLRRLLRRAVLFGRRLGLEKPFLVDMAGAVIARMSGIYPELKKRQTYVLEMIASEEAR 361

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TL  GL LL+ ++  +   +I +G  AFKLYDT+G P+++  +I   RGL+ +D+  
Sbjct: 362 FSETLATGLELLEEIVRQIKGGQI-SGQDAFKLYDTYGFPVEMTTEIAAERGLS-VDLGG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +E QR++AR+                       T F+GY+L R             
Sbjct: 420 FEAEMEVQRTKARSSRKFSFDAAATAEAVKNMRHGEKTCFVGYELTRQ------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG  I  
Sbjct: 468 -----------KSTIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEIITG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G R ++ +      G+F+H   V  G L+   S    ID + RR ++ NH+ATH+L  AL
Sbjct: 517 GGRFEVKNTLHLPNGVFLHQGRVISGCLKISESAAAHIDEERRRDIARNHTATHILQTAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG  V Q GS +TP+ LRFD +H +P+T  E++  E+ VND I +NLPV    M   
Sbjct: 577 RQVLGEQVQQRGSVVTPERLRFDFSHLRPMTKDEIRRAEEFVNDKIRRNLPVYAEEMPYR 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A+  G  AL G KY DRVRV+ V        S+ LCGGTHVS++GEI L  IVSESS+ 
Sbjct: 637 HALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVSASGEISLFKIVSESSVG 693

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG+ A +++  Q + L  L+  L+ +    + ++ E+ EE   L+      
Sbjct: 694 AGLRRIEAVTGREAEAYINLQQDSLSELSGMLEAAPEESLRKLAELKEEIDTLKKTVQNL 753

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + Q++  +             +  +   ++ V++  L+   D L+ K+ SG+I+L  +S 
Sbjct: 754 ERQMSRGEAEELLSKAEDYKGIKLLVSRMTSVNADTLRETADFLRDKLGSGVIVLGTVS- 812

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K   L +VT DL+++ ++A ++ +  +++ GGGG GG+P+MAQ GG +  K D+A+  
Sbjct: 813 EDKPFFLCMVTPDLIEKGYHAGNIVKKLSQIAGGGG-GGKPNMAQGGGRDKAKLDEALQA 871

Query: 892 VASFL 896
           V   L
Sbjct: 872 VKGML 876


>gi|34556759|ref|NP_906574.1| alanyl-tRNA synthetase [Wolinella succinogenes DSM 1740]
 gi|44888324|sp|Q7MAD3|SYA_WOLSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|34482473|emb|CAE09474.1| ALANYL-TRNA SYNTHETASE [Wolinella succinogenes]
          Length = 855

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/893 (37%), Positives = 504/893 (56%), Gaps = 48/893 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL++F   GH +  S  L+P +DPTL+FTN+GMV FK+IFTG+   P     T+ 
Sbjct: 2   DIRKLFLDYFASKGHAVYESMPLVP-DDPTLLFTNAGMVQFKDIFTGKVPAPTNPRATSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFKE+AI  AW+ +T+     +  
Sbjct: 61  QLCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGDYFKEQAIDHAWEFVTEVLGFSKEV 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC-I 183
           L++TV++ D+EAF+LW+K   + A +I R+   DNFW M +TG CGPCSEIF DQGE   
Sbjct: 121 LWVTVHESDDEAFELWQK--HVDASRIKRMGDKDNFWQMGDTGACGPCSEIFVDQGEEKF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+A + + K++N
Sbjct: 179 HGSEDYFGGDGDRFLEIWNLVFMQYERSSDGTLTPLPKPSIDTGMGLERVAALKEGKSSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I+  E++TG  Y   +  ++RVI DH+RS  FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPMIRKVEELTGKPYHYESGASYRVIADHIRSICFLLAQGVNFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG   P +  +   +C +MG  Y  L + +  I+     E+ERF  T+ 
Sbjct: 299 ILRRAVRHGYLLGLNAPFLHEVAEVVCGQMGDHYGYLKEKREHIKRLTFQEEERFFATIA 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ +    L       + +G+ AFKLYDT G PLD+ +D+L  +G   +D+ +F   ++
Sbjct: 359 GGMEVFKKELEKT--QSVFSGEAAFKLYDTFGFPLDLTEDMLREKG-IRVDLAAFEACMK 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR+RA+A   G G    E  +  L E + +  F+GY+                      
Sbjct: 416 EQRARAKASWKGSGDELKEGDFALLLEAFPSNSFVGYE---------------------- 453

Query: 484 LTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                +S + AI+ +  + V    +G+   V+ ++TPFYAE+GGQ GD G     G  + 
Sbjct: 454 -KEAHTSKLLAILNRDYKRVSSLGAGESGFVMLEETPFYAESGGQCGDEGELRARGRIVA 512

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                KK  G+ +         +    +L   +  +   ++  +HSATHLLH  L   LG
Sbjct: 513 QVQGTKKYFGLNLSRIEAL-DEICEGETLEAVVSRER-LEVQKHHSATHLLHAILRQKLG 570

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV+Q GS +  D LRFD +H K +T  E+  +E+ VN +I+ ++P  TR M  ++A AS
Sbjct: 571 DHVAQAGSLVEKDRLRFDFSHPKALTHEEVGMVEEEVNRLISLSIPSRTREMRVDEAKAS 630

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D VRVV     D G  S  LCGGTHV ++  I   YI  ES + AG+RR
Sbjct: 631 GAMALFGEKYGDLVRVV-----DFGEASVELCGGTHVENSAHIGSFYITKESGVSAGVRR 685

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G  A  +     +++      LK  +  +   +E++ E+ R+L+   +      +
Sbjct: 686 IEAVCGMAAYHYGKEALQEIAEAKEILKAKELKL--GIEKLKEQVRELKSEMSALSSSKS 743

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
                   + +   +   +  +++ ++K+ +D ++ + +   ++L+ + KE+K  +   V
Sbjct: 744 GAISEGVMMGETRVI---VETLEAGDIKNSIDEIKNRYEKVAVLLLQV-KEEKVMLAAGV 799

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +  DR  A    +  A +LGGGG GGR   AQ+GG + +KAD+A+    ++
Sbjct: 800 KGE--DRIKAGAWIKEIAPILGGGG-GGRDDFAQAGGKDASKADEALQSAKNY 849


>gi|218129222|ref|ZP_03458026.1| hypothetical protein BACEGG_00798 [Bacteroides eggerthii DSM 20697]
 gi|217988600|gb|EEC54920.1| hypothetical protein BACEGG_00798 [Bacteroides eggerthii DSM 20697]
          Length = 873

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/919 (35%), Positives = 482/919 (52%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y       +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGTTYGVNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNVQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL    +   DI  F+  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENDMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLQE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHLEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +  D LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGDHVEQKGSLVNSDSLRFDFSHFQKVTDEEIRQVEHIVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    L    + ++ L +    +  ++ G + +
Sbjct: 674 GNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAP-DLSGAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       K K     E L  +  +I  V  +    + + +  +K++   L+
Sbjct: 733 YIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKVIKFCAAMIPADAIKNIAFQLR 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 851

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 852 AGGKNPDGLSAAVDKVIEL 870


>gi|110637850|ref|YP_678057.1| alanyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|123058839|sp|Q11V49|SYA_CYTH3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110280531|gb|ABG58717.1| alanyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 877

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/921 (34%), Positives = 489/921 (53%), Gaps = 72/921 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF   GH+++PS+ ++  NDPTLMFTN+GM  FK+ F G E P Y+ +
Sbjct: 1   MTSAEIRQQFLDFFASKGHQIVPSAPIVNKNDPTLMFTNAGMNQFKDYFLGNETPKYRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  +W+LLT  + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKEEAIAWSWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T+++ D+        EA+  WKK   ++ D+I+     DNFW M E GPCGPCS
Sbjct: 121 KDRLYVTIFEGDDKEKLARDTEAYNFWKKW--IAEDRILLGNKKDNFWEMGEQGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + +EIWN VF+QF ++       LP   +DTGMG
Sbjct: 179 EIHVDLRTDEEVKAVDGKTLVNNDHPQVVEIWNNVFIQFNRKADGSLEELPDKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+   +Q+K +NYD D+F  +I    +  G+KY  +    +  RV+ DH+R+ SF+IA
Sbjct: 239 FERLCMAIQKKKSNYDTDVFTPMIDFVAKAAGIKYGADEKTDIAMRVMADHIRAISFVIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   EP +  L+  L  ++   +PEL   +  
Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNLKEPFLYKLVAVLADQLAHVFPELKSQQDF 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           + + ++ E+  F +TLD GL  L+ +   L   +   ++G  AF+LYDT G PLD++Q I
Sbjct: 359 VAKVVQEEEISFLRTLDIGLSKLEQIREELKAKKATTIDGKTAFELYDTFGFPLDLIQLI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F+  +  Q+ R++         + E   +++  +    +F+GYD L 
Sbjct: 419 ARENGLT-VDEAGFDTEMAAQKQRSKKA------ASVETSDWTIVTEDDEVEFVGYDHLI 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +  + + R+V  +                               + ++V D TPFYAE+
Sbjct: 472 STSRIIKYRQVKTKGK----------------------------DQYQLVLDTTPFYAES 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ GDTG  +    ++++ +  K+   I       E+     +  +   ++   R    
Sbjct: 504 GGQAGDTGTLVQGDKKIKVLNTVKENNLIIHI---TEQLPADLKAPVDCKVNVLQRSLTE 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LGSHV+Q GS +    LRFD +H   +T  ELK +E  VN+ I 
Sbjct: 561 NNHSATHLLHAALKQVLGSHVNQKGSLVNESVLRFDFSHFSKVTEEELKKVELIVNEKIR 620

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+ +   R +  E+A   GA AL G KY + VR+++ +       S  LCGGTHVSSTG
Sbjct: 621 ENISLNERRNVPIEEAKKLGAMALFGEKYGEYVRMITFDDS----FSRELCGGTHVSSTG 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    I SESS+ AG+RRIEA+T   A   +  Q   L  +   +K +  ++V  +E++
Sbjct: 677 KIGFFKITSESSVAAGVRRIEALTATAAEVFVDEQQTTLAKITELMK-NPKDLVKSLEDL 735

Query: 764 WEEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE   LQ         K K        +  K+ D+N +   +       ++ V   L++
Sbjct: 736 LEERIVLQKQLDEYQAEKSKAIAKSLKDTVEKVGDINVIRAKLVLPSVDAMRQVAYDLKQ 795

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            + + +++L  ++ + K ++ ++++++L+     NA  + R  +K + GG GGG+P  A 
Sbjct: 796 TVDNLLLVLA-VNVDGKPNIAVMISDNLVADKGLNASQMIRELSKEIQGG-GGGQPFYAT 853

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG   N  D+ IA     ++
Sbjct: 854 AGGKELNGLDKVIAKSKDLIQ 874


>gi|189463200|ref|ZP_03011985.1| hypothetical protein BACCOP_03913 [Bacteroides coprocola DSM 17136]
 gi|189430179|gb|EDU99163.1| hypothetical protein BACCOP_03913 [Bacteroides coprocola DSM 17136]
          Length = 872

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 485/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F++FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  A++ L     L
Sbjct: 61  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAYEYLVSVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA   W +      D II    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYVTVFEGSPSEGISRDDEAAGYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSAEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+A   ++G KY  +    V  RV+ DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKAIGDLSGKKYGDDEKVDVTMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   LG  +  M  LLP L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLLPVLIENMGGAYPELKAQQA 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  ++         ++G  AF LYDT G P D+ + 
Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLDKTMAETKAAGKTEISGVDAFTLYDTFGFPFDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   GL   D+  F   +++Q+ RAR       +      W +LKE  G T F+GYD  
Sbjct: 419 ILRENGLTA-DVKGFEAEMQKQKERARNA-----AAVETGDWVTLKE--GETTFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V   TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   + I D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQIGDTGVLVSEFETIDIIDTKKENNLPIHI---AKKLPEHLEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TPD LRFD +H + +T  +++ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGAHVEQKGSLVTPDSLRFDFSHFQKVTPEQIREVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHVS+T
Sbjct: 620 RENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGS------SIEFCGGTHVSAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AGIRRIEA+TG +         + +  L +    +  ++   + +
Sbjct: 674 GKIGMVKIISESSVAAGIRRIEAVTGAKVEEMFDTVQDAINDLKALFNNAP-DLKAAISK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       K K       L     +I  V  +  ++  + +  +K++   L+
Sbjct: 733 YIEENAGLKKQMEEFMKEKEAAVKNKLIEGAKEINGVKVIQAVLP-MPADAVKNIAFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +    + +++G   E K  + + +++D +    NA  L R +AK++ GG GGG+PH A 
Sbjct: 792 GQFPENLFVVIGSVFENKPLLTVTMSDDQVKAGLNAGQLVREAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  + S 
Sbjct: 851 AGGKNPDGLSAAVDKIVSL 869


>gi|332176358|gb|AEE12048.1| alanyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 872

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/918 (36%), Positives = 494/918 (53%), Gaps = 68/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  FL+FF+++GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G ++P Y+ 
Sbjct: 1   MMTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI+ AW  LT+   L
Sbjct: 61  AADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAIKYAWTFLTERLQL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+TV+          D+EA   W + +  + D+II  +  DNFW M +TGPCGPC
Sbjct: 121 PKDRLYVTVFGGSPEEGLSRDDEAASYWLQYT--TEDRIIDGSRKDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++    IEIWNLVFMQ++++       LP   IDTGM
Sbjct: 179 SEIHIDLRSEEERQAVCGRDLVNKDHPLVIEIWNLVFMQYDRKVDGHLEPLPHKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   +Q K +NYD DLF  LI+A E ++G +Y  N    +  RV+ DH+R+ +F I
Sbjct: 239 GFERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ YA   L   EP++  LLP L   MG AYPE++  + 
Sbjct: 299 ADGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGEAYPEIVAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDI 404
           LI   ++ E+E F +TL +GL LL+  +  L +D ++L+G  AF LYDT+G PLD+ + I
Sbjct: 359 LIASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  RG+  +D ++F++ ++EQ+           +      W  L E+   + F+GY+ L+
Sbjct: 419 LSERGMT-LDQVAFDKLMQEQK-----SRARQAAAIDAADWEVLDEETTESTFVGYETLQ 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +K                                +VV  +TPFYAE 
Sbjct: 473 IETHILRYRKVADKKRSY----------------------------YQVVLAETPFYAEM 504

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G  I            K+   + VH           +   +  +  + R    
Sbjct: 505 GGQIGDKGVLIAQDGTEYPIIDTKRENNLPVHIL--STLPANPKQPFIARVGDELRHLTE 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHL+HHAL  +LG+HV Q GS ++ D LRFD +H K +T  E+  +E  VN  I 
Sbjct: 563 ANHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVNAEIR 622

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + P    R +    A   GA AL G KY D VRV+          S  LCGGTHV+STG
Sbjct: 623 ADRPRDEQRNVPIAKAKEMGAMALFGEKYGDEVRVIKYGD------SVELCGGTHVASTG 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    I+SE SI AGIRRIEA+TG +A  ++   +E+L+     L      +   ++ +
Sbjct: 677 QIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPL-KALDRL 735

Query: 764 W----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                E+ + ++     +  Q+ ++ L+         +  +   + S   K V   ++++
Sbjct: 736 IAEGAEQRKAIEQYTKAQAEQIALQALADQTKRGETTIVTVNKPMSSDVAKDVAGTIRER 795

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +Q   + L+G ++E K ++ ++++ DL+D+  NA  L +  A ++ GG GGG+PH A +G
Sbjct: 796 LQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNASKLIKEVASLIKGG-GGGQPHFATAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      AI  + S +
Sbjct: 855 GRNPEGLQAAIDHIVSLI 872


>gi|159900152|ref|YP_001546399.1| alanyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|205830067|sp|A9B660|SYA_HERA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|159893191|gb|ABX06271.1| alanyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 889

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/904 (37%), Positives = 494/904 (54%), Gaps = 56/904 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL++F + GH ++PSSSLIP ++PTL+FT +GMV F ++F G+E   Y   
Sbjct: 1   MKGSELRQRFLDYFARQGHAVVPSSSLIPADNPTLLFTVAGMVQFNDVFLGRESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+R  GK NDL+NVG + RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+E  LD
Sbjct: 61  VSSQKCLRISGKQNDLENVGPSPRHHTFFEMLGNFSFGDYFKKDAIRFAWEFLTQEIGLD 120

Query: 122 QRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            +R+++++Y+       DEEA  LW   + + A++I+R    DN WS  + GP GPCSEI
Sbjct: 121 PKRMWVSIYEGDEQIPADEEAHDLWL--AYMPAERILRFDAKDNLWSAGDVGPRGPCSEI 178

Query: 176 FFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            +  G+     +P   + E + Y+EIWNLVFMQ+ +       +LPK SIDTGM LER+A
Sbjct: 179 HYYIGDDPDNQVPEGVNSEDDTYMEIWNLVFMQYNRDENGVLTLLPKPSIDTGMSLERLA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
            V Q    +Y+ DLF  +I    ++ G    +   N   + V+ DH RS +F+IADG+ P
Sbjct: 239 IVKQGVFRSYETDLFTPIIHTVMELLGTGSDHYQANSSAYHVVADHSRSIAFMIADGLRP 298

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGR YVLRR++RRA  + + +G+  P +   +  +   MG+AYPEL   +  I E + 
Sbjct: 299 GNEGRSYVLRRLVRRAAYFGQTIGFKAPFLAETIATVIDMMGAAYPELRSKQAYIAEVVT 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERF KTL  GL  L+ +L +     + +G  AFKLYDT+G PLD+ + I+  RGL  
Sbjct: 359 GEEERFNKTLAGGLRQLEAMLPNQADKAVFSGADAFKLYDTYGFPLDLTERIVAERGLT- 417

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  +   LE QR+R R  +       TE+ W         T F GY+ L         
Sbjct: 418 VDLAGYEAELEAQRARGRGAAQFKKGAVTER-WAE--RNLAPTSFTGYNELESW------ 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V A+   GE +     GQ+V  V D+TP YAE+GGQ+GD+G
Sbjct: 469 -----------------GHVLALEFDGEELGTVQRGQEVAFVLDRTPCYAESGGQMGDSG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G    + I DVQK   G+FVH   V +G +     + +T+D   RR +  NH+ATHL
Sbjct: 512 VLVGPHGTIVIDDVQKPVPGVFVHRGKVSKGSVSLGEQVTVTVDAARRRDIVRNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG H  Q GS + P+ LRFD  + K ++S +L+ IED VN  I  +  V   
Sbjct: 572 LHRALRDTLGDHAEQKGSLVAPERLRFDFNNQKGLSSEQLQQIEDQVNAWIRADSKVEAA 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSST 702
            M    A   GA AL G KY D VRVV+V   +              S  LCGG HV+ T
Sbjct: 632 EMALPQARELGAMALFGEKYGDVVRVVTVGCGNASDHIHTNSEAPVCSRELCGGVHVART 691

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           GEI    IVSE S+ +G+RRIEA+TG+ A   +  Q + +++L   L    G V  +++ 
Sbjct: 692 GEIGFFKIVSEGSVASGVRRIEAVTGRAAAEWVSQQAQLIRTLGDKLGAQPGKVEEKLDA 751

Query: 763 IWEEYRKLQLIHAKRKLQLNV---EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQ 817
           +  + +  +    + + ++     + L   KI  A    +   +   D+   + + + L+
Sbjct: 752 LLLDQKARRDEIERLRGEIAAGQVDSLLAQKIEQAGTPLVVARVEASDADSFRRLGEQLR 811

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            KI SG+++L G   + K  +L   T D +    +A +L +  A  +GGGG GGR   AQ
Sbjct: 812 DKIGSGVVIL-GTVIDGKPLLLAAATADQVKAGRHAGNLVKALAAKVGGGG-GGRADFAQ 869

Query: 877 SGGP 880
           +GG 
Sbjct: 870 AGGR 873


>gi|147668699|ref|YP_001213517.1| alanyl-tRNA synthetase [Dehalococcoides sp. BAV1]
 gi|205830043|sp|A5FSU1|SYA_DEHSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146269647|gb|ABQ16639.1| alanyl-tRNA synthetase [Dehalococcoides sp. BAV1]
          Length = 871

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/907 (37%), Positives = 512/907 (56%), Gaps = 47/907 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    
Sbjct: 1   MFSSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + + QKC R      D+++VG    H T FEMLGNFS G YFK+ AI  AW+ +T+  ++
Sbjct: 61  MASCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQ 179
              RL+ITVY +D+EA  LWK+  G+  ++I+R+   DNFW    ++GPCGPCSEI +D 
Sbjct: 116 PAERLWITVYLDDDEAIALWKEQ-GVPENRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174

Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G+    G    +   +  R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  ++
Sbjct: 175 GQETGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILM 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K N Y+ D+F  +++ +  ++G KY  +       R++ +H R  +FLIADG++P   
Sbjct: 235 QSKKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDKA 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + R LG   P ++ +  A+   M   YPEL + +  + E + SE+
Sbjct: 295 GRGYVLRRLLRRAVLFGRRLGLERPFLVDMAGAVINRMSGIYPELKKRQTYVLEMIASEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF +TL  GL LL+ ++       I +G  AFKLYDT+G P+++  +I   +GL+ +D+
Sbjct: 355 ARFSETLATGLELLEEIVRQTKGGRI-SGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VDL 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E QR++AR+                       T F+GY+L             
Sbjct: 413 DGFESEMEIQRTKARSSRKFSFDAAATAEAVKNMRHAEKTCFVGYEL------------- 459

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S +K I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG  I
Sbjct: 460 ----------AIQKSTIKDILTEGGTVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEII 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  R ++ +      G+F+H   V  G L+   +    I+ + RR ++ NH+ATH+L  
Sbjct: 510 TDAGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHILQT 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG  V Q GS +TPD LRFD +H KP++  E++ +E+ VND I +NLPV    M 
Sbjct: 570 ALREVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMP 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A+  G  AL G KY DRVRV+ V        S+ LCGGTHV+++GEI L  I+SESS
Sbjct: 630 YRHALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVTASGEIALFKIMSESS 686

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG+ A + +  Q + L  L+  L+ +      ++ E+ EE   L+    
Sbjct: 687 VGAGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKAVQ 746

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + Q++  +             V  +   ++ V++  L+   D L+ K+ SG+I+L G 
Sbjct: 747 NLERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GT 805

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   L +VT DL+ + ++A ++ +  +++ GGGG GG+P+MAQ GG + +K D+A+
Sbjct: 806 VTEDKPFFLCMVTPDLIAKGYHAGNIVKKLSQIAGGGG-GGKPNMAQGGGRDKSKLDEAL 864

Query: 890 AGVASFL 896
             V   +
Sbjct: 865 QAVKGMI 871


>gi|317475197|ref|ZP_07934464.1| tRNA synthetase class II [Bacteroides eggerthii 1_2_48FAA]
 gi|316908650|gb|EFV30337.1| tRNA synthetase class II [Bacteroides eggerthii 1_2_48FAA]
          Length = 873

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/919 (35%), Positives = 483/919 (52%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADSSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y       +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGTTYGVNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNVQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLQE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHLEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +  D LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGDHVEQKGSLVNSDSLRFDFSHFQKVTDEEIRQVEHIVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    L    + ++ L +    +  ++ G + +
Sbjct: 674 GNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAP-DLSGAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       K K     E L  +  +I  V  +    + + +  +K++   L+
Sbjct: 733 YIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKVIKFCAAMIPADAIKNIAFQLR 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 851

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 852 AGGKNPDGLSAAVDKVIEL 870


>gi|224025892|ref|ZP_03644258.1| hypothetical protein BACCOPRO_02638 [Bacteroides coprophilus DSM
           18228]
 gi|224019128|gb|EEF77126.1| hypothetical protein BACCOPRO_02638 [Bacteroides coprophilus DSM
           18228]
          Length = 872

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/919 (35%), Positives = 481/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F++FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+  I  A++ L     L
Sbjct: 61  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEVIGWAYEYLVTVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA   W +      D II    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYVTVFEGSPEEGLARDDEAAGYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSEEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    ++G KY  +    V  RV+ DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKVIGDLSGKKYGDDEKVDVAMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   LG  +  M  L+P L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVPVLIENMGGAYPELKAQQA 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LL+  +  +       ++G  AF LYDT G P D+ + 
Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLEKTMNEAKAAGKTEISGVDAFTLYDTFGFPFDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   GL   D+  F   +++Q+ RAR       +      W +LKE  G T F+GYD  
Sbjct: 419 ILRENGLTA-DVKGFEAEMQKQKERARNA-----AAVETGDWVTLKE--GETTFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V   TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLSDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   + I D +K+           ++     +  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIDIIDTKKENNLPIHI---TKKLPEHLDAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TPD LRFD +H + +T  +L+ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPDSLRFDFSHFQKVTPEQLREVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHVS+T
Sbjct: 620 RENIPLTEYRNLPIEKARELGAIALFGEKYGDEVRVVQFGS------SIEFCGGTHVSAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AG+RRIEA+TG +         + L  L +    +  ++   + +
Sbjct: 674 GKIGMVKIISESSVAAGVRRIEAVTGAKVEEIFDTVQDTLSDLKALFNNAP-DLKAAISK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K       L      I  V  +  ++  + +  +K++   L+
Sbjct: 733 YIDENAGLKKQVEEFMKEKEASVKNKLIEGAKDINGVKVIKAVLP-MPADAVKNIAFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +    + +++G   + K  + + ++ED +    NA  L R +AK++ GG GGG+PH A 
Sbjct: 792 GQFTENLFVVIGSVFDNKPLLTVTMSEDQVKAGLNAGQLVREAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 851 AGGKNPDGLSAAVDKVIEL 869


>gi|206896025|ref|YP_002246808.1| alanyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|206738642|gb|ACI17720.1| alanyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 876

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/902 (37%), Positives = 514/902 (56%), Gaps = 50/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR+ +L FF++ GH  LPSSSL+P +DPTLMFT++GMV FK  F GQ +P  + +
Sbjct: 3   MSGDEIRSVYLSFFEEKGHLRLPSSSLLP-DDPTLMFTSAGMVQFKPYFLGQAQPPAKRI 61

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TTVQKC+R G    DL+NVG T+RHHTFFEMLGNFS G YFK+ AI  AW+L+T+ F L 
Sbjct: 62  TTVQKCLRTG----DLENVGHTSRHHTFFEMLGNFSIGDYFKKEAILWAWELVTQRFKLP 117

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
             RL++T+Y +D+E+F +W  + GL  ++I+R+   +NFW     TGPCGPCSEI +D G
Sbjct: 118 PERLWVTIYQDDDESFDIWHNLVGLPENRIVRMGKEENFWGPPGPTGPCGPCSEIHYDMG 177

Query: 181 ECIPGGLPG--SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E  P   P    + EGER+ E WNLVF Q+ Q        LP+ +IDTGMGLERMA ++Q
Sbjct: 178 EEWPCDDPSKGPAAEGERFREFWNLVFTQYYQDENGNLSDLPRKNIDTGMGLERMAAIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K  N++ DLF+ +I+A  Q+TG KY   N+V  RVI DH+R+ +F I DG +P+NEGRG
Sbjct: 238 GKPTNFETDLFQPIIEAIGQLTGKKY-EENLVAFRVIADHIRALTFAITDGAVPSNEGRG 296

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YV+RRI RR++ Y   LG  EP + +++P +     + YPELI  + L  + ++ E+E F
Sbjct: 297 YVIRRIARRSVRYGLQLGKEEPFLYNIVPVVVEHYKNWYPELIGGQDLSMKLIKQEEEAF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL      LD ++  + K  I  +  +  F+LYDT+GLPLDI+ D+L    L+  D  
Sbjct: 357 LRTLSSSQRYLDELVQQMKKQGIKEVPAEEVFRLYDTYGLPLDIIDDVLQENNLST-DKE 415

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
             NQ +E+ + ++RA   G  +  T+ I+  L      T+F GYD L             
Sbjct: 416 KLNQIIEQYKEQSRASWKGGEAVLTDTIFTRLVGNI-KTEFTGYDQLED----------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       SS + A V+      E   G +  ++ + TPFYAE+GGQ  D G    
Sbjct: 464 ------------SSTIIATVKDNSR-TELHEGDEGAIIVEHTPFYAESGGQEADHGIITT 510

Query: 537 DGIRLQITDVQKK-AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           +    ++ DVQK     + VH+  V  G+++      L +D + R+ +   H+ATHLLH 
Sbjct: 511 ETGTFRVDDVQKVLGGNVIVHYGQVTSGVIKEGQQAFLQVDIERRKAMQRAHTATHLLHA 570

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD  RFD +H + ++ A+++ +E  VN+ + +N  V     +
Sbjct: 571 ALRRVLGDHVRQGGSKVGPDWFRFDFSHFESMSPAQIQEVERLVNEQVLENKEVNIFFTS 630

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A   GA AL G KY + VRVV V        S  LCGGTH   TG+I L +I+SES+
Sbjct: 631 LDEAKKMGAMALFGEKYGETVRVVEVP-----DWSMELCGGTHAKRTGDIGLFHIISESA 685

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
              GIRRIEAITG++A  HL   ++ +K +A  L  S+  VV +++++ ++ ++      
Sbjct: 686 SSQGIRRIEAITGKKALEHLWNLEKLVKDVAEELDTSKDMVVQKLQKLNQDLKEKDKEIK 745

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
               +++  +         +I  + F++ +    D   L   +DA++       +  +G 
Sbjct: 746 HLIERVHTAEGKELFTKAEEINGIKFINAVFPPRDPSALIIAVDAMRS-FNKPFVAALGT 804

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              +K  +++  + D+ ++ N  ++  ++A  + GG GGGRP + Q+GG + ++   A+ 
Sbjct: 805 LNNEKPVLVLAASPDVAEKVNLREVVNMAASYI-GGKGGGRPTLVQAGGTDASRLSVAVQ 863

Query: 891 GV 892
             
Sbjct: 864 QA 865


>gi|86151665|ref|ZP_01069879.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315124034|ref|YP_004066038.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841294|gb|EAQ58542.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315017756|gb|ADT65849.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 842

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/897 (38%), Positives = 506/897 (56%), Gaps = 62/897 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V          V+ + TPFYA +GGQ  D          + 
Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503

Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             +V    +   ++ + V+ G   +    +   ID + R Q++ +HSATHLLHHAL  IL
Sbjct: 504 KREVLDTQKFFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREIL 563

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A  
Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKK 623

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+R
Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+  + A   +  Q E+L  +   LK +  +++  V+++  E   L+          
Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILNGVKKLKNEILSLKNELKN----S 731

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           +  +L    I  V      I   D+ ++K+++D  + K    +I+L+ + K++K ++   
Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           V +       A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 788 VKDAP---LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|300770787|ref|ZP_07080665.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762344|gb|EFK59162.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 893

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/919 (35%), Positives = 500/919 (54%), Gaps = 71/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL FF+   H+++PS+ ++  NDPTLMFTN+GM  FK+ F G+ +P Y  +
Sbjct: 23  MTNREIREAFLNFFKSKNHQIVPSAPVVVKNDPTLMFTNAGMNQFKDFFLGEAQPKYSRI 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+LLT  + LD
Sbjct: 83  ADTQRCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKKEAIEWAWELLTVVYKLD 142

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T+++ D+        EA+  WK    +S D+I+     DNFW M ETGPCGPCS
Sbjct: 143 KDRLYVTIFEGDDSEGLVKDTEAYDFWKSW--ISEDRILLGNKKDNFWEMGETGPCGPCS 200

Query: 174 EIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI +D           G    + +  + IEIWNLVFMQF +        LP   +DTGMG
Sbjct: 201 EIHYDMRTEEERRTTPGQSLVNADHPQVIEIWNLVFMQFNRLKNGSLESLPAKHVDTGMG 260

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+   +Q K++NYD D+F+ +I    Q  G++Y  +    +  RV+ DH+R+ SF IA
Sbjct: 261 FERLVRAIQGKSSNYDTDVFQPMIAFIAQKAGIQYGADERTDIAMRVLSDHIRAVSFAIA 320

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L +  P +  L+P L  E    + ELIQ +  
Sbjct: 321 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNFKTPFINELVPLLAKEFEGVFDELIQQQDF 380

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +++ +  E+  F +TL  G+   +        +  + G+ AF+L+DT+G P+D+ + +  
Sbjct: 381 VQKVVLEEEVSFLRTLVTGVQRFESYAES---NTAVGGEFAFELFDTYGFPIDLTELLAR 437

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  +D+  F +AL+ Q+ R+RA      +      W ++ E     +F+GYD L+ +
Sbjct: 438 EKGME-VDMAGFQEALQIQKDRSRAA-----TAIDTGDWVAVSED-DQVEFVGYDNLKAT 490

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             + + RKV                             A   ++ ++V   TPFYAE GG
Sbjct: 491 TEIVKYRKVT----------------------------AKGKEQYQLVLSVTPFYAEGGG 522

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD+G  + +    +I     K E   + H       ++ E +    +D Q R     N
Sbjct: 523 QVGDSGVLLSESTGEKIYITDTKKENGLIVH-FTNTLPVQMEGTFEAKVDVQKRLDTENN 581

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG+HV+Q GS +  D LRFD++H   +T  ELK +ED VN  I +N
Sbjct: 582 HSATHLLHAALKEVLGTHVNQKGSLVNADILRFDISHFAKVTEEELKQVEDIVNAKIREN 641

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +P+   R +  + A+ SG  AL G KY D VRV++ + +     S  LCGGTHV +TG+I
Sbjct: 642 IPLKEQRHVPFQQALDSGVTALFGEKYGDYVRVITFDDQ----FSKELCGGTHVKATGQI 697

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I+SES++ AG+RRIEAITG +  + +    + +  L   L  +  + V  + ++ +
Sbjct: 698 GFFKIISESAVAAGVRRIEAITGTKCAAVIREHFDLVHRLGELLH-NPKDFVSTLSKVID 756

Query: 766 EYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E   L+    K  ++ ++      +    +I  VNF++  +   +++ LK++  AL+  +
Sbjct: 757 ENSALKKEIEKSIIEKSLALKSDLEQKIQQIDGVNFLATQVELPNAEALKTLAYALKGAV 816

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +  ++L G   + K ++ +VV++ L      NA  + R  AK + GG GGG+P  A +G
Sbjct: 817 DNLFLVL-GADFDGKPNLTVVVSDQLSKERGLNAGTIVRELAKEINGG-GGGQPFFATAG 874

Query: 879 GPNGNKADQAIAGVASFLK 897
           G N      AIA   ++++
Sbjct: 875 GKNPEGLPAAIAKAKNYIQ 893


>gi|226227321|ref|YP_002761427.1| alanyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
 gi|226090512|dbj|BAH38957.1| alanyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
          Length = 928

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/952 (37%), Positives = 507/952 (53%), Gaps = 109/952 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--YQ 59
            N S IR+ FL FF+KNGH + PSSSL+P +DPTL+FTN+GMV FK +F G E+     +
Sbjct: 1   MNASEIRSRFLAFFEKNGHAIRPSSSLVPADDPTLLFTNAGMVQFKKVFLGMEEAPDGKR 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TT QKCVRAGGKHNDL+ VG T RHHTFFEMLGNFSFG YFK  AI+ AW+ +T++  
Sbjct: 61  RATTSQKCVRAGGKHNDLEQVGHTARHHTFFEMLGNFSFGDYFKRDAIKFAWEFITEDLK 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD- 178
           + +  L +TV+ ED+EA +LWK ++ +  ++I  +   DNFW MA+TGPCGPC+EI+ D 
Sbjct: 121 IPREHLRVTVFHEDDEARQLWKDVADVPENRIYGLGAKDNFWQMADTGPCGPCTEIYVDL 180

Query: 179 --------------------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI 218
                               + E           E  R++EIWNLVFMQF++Q       
Sbjct: 181 AKLAADWAFPADATGEWTNTEIEDYSLDAFVEGAEAGRFLEIWNLVFMQFDRQADGTLVP 240

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------- 267
           LPK S+DTG GLER+A V+Q  TNN+  DLF+ LI   E V G+ Y              
Sbjct: 241 LPKPSVDTGAGLERIAAVMQGVTNNFHTDLFRPLIAKVEDVVGIGYPYRPGVGLGKAYAK 300

Query: 268 -----NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
                +  + RV+ DH R+  FL+ADG+ P+NEGRGYVLRRI+RRA+ +A LLG  EP +
Sbjct: 301 DGQEIDPASFRVLADHARAVGFLLADGVFPSNEGRGYVLRRILRRAVRHAWLLGRREPTL 360

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS------HL 376
           +H++  L   M   YPEL   +  I ET R+E++RF  T+D G+   + +          
Sbjct: 361 VHVVEVLIDTMRDLYPELHVRRKHILETTRAEEDRFLTTIDAGMSRFEELAPAASTQGST 420

Query: 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
                L+G+ AF+LYDT G P+D+   +   RG   +DI  F ++L+ QR +++      
Sbjct: 421 TMRGTLSGEDAFRLYDTFGFPIDLTDLMARERGY-LVDIAGFERSLQAQRKQSQEDRKSR 479

Query: 437 GSGTTEKIWFSLKEKYGATQ-------FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
               +   +          Q       F+GY+                          + 
Sbjct: 480 QITVSADDFADPTHWTHDQQHQAALGRFVGYETTE-----------------------IE 516

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           +IV A       V +   G +V V+  +TPFYAE+GGQ+ D G   G+G  +++ +V+K 
Sbjct: 517 TIVTA-------VRQLPDG-RVAVMLRETPFYAESGGQVSDHGTITGEGWTVEVNEVRKL 568

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              I    +                +    RR    +H+ATHLLH AL  +LG HV Q G
Sbjct: 569 DGRIAAIGSSTGE---IIFGRAHAVVPRDRRRDTERHHTATHLLHAALRKVLGDHVHQAG 625

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           S +TPD LRFD TH  P+T+ +L +IE +VN  + Q+ PV TR  +  DA+A GA AL G
Sbjct: 626 SLVTPDRLRFDFTHHGPVTAEQLAAIEADVNAGVWQSAPVNTREESYVDAVAHGAMALFG 685

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            KY D VRVV +        S  LCGGTHV +T EI L+ +++ES + AG+RRIEA++G 
Sbjct: 686 EKYGDVVRVVEIPSL-----SVELCGGTHVRNTAEIGLVRVINESGVAAGVRRIEAVSGP 740

Query: 730 RARSHLMGQDEKLKSLASFLKVS-------QGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           RA   L  ++  L  +AS LKV           +  +++ + +E ++L+    +      
Sbjct: 741 RAFQFLADRERALLQVASRLKVPMSGMTSGAEQIERKLDALMDERKQLEKRLEESLRGGG 800

Query: 783 VED-------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
                               F++  +   D K L+++ DA+++ + SG+ +L     + K
Sbjct: 801 AGGGLAQQLIAKAIDAGGTRFIAAKVDVPDVKALQALGDAVREALGSGVAVLGAALADGK 860

Query: 836 ASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            ++L V T+D  DR   A  + R  A  + GG GGG+PHMAQ+ G    + D
Sbjct: 861 GALLAVATDDARDRGLRADAVVRDVAATV-GGRGGGKPHMAQA-GVEPGQID 910


>gi|302335910|ref|YP_003801117.1| alanyl-tRNA synthetase [Olsenella uli DSM 7084]
 gi|301319750|gb|ADK68237.1| alanyl-tRNA synthetase [Olsenella uli DSM 7084]
          Length = 880

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/905 (38%), Positives = 507/905 (56%), Gaps = 44/905 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF+  G  L PSSSL+P  DP+L+ TN+GM  FK  + G +       
Sbjct: 8   MTTAEIREDYLRFFESKGCRLYPSSSLVPE-DPSLLLTNAGMNQFKEYYQGTKTMREIGA 66

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKC+R     ND+DN+G  +RH +FFEMLGNFSFGGY K  AI  AW+ +T  +   
Sbjct: 67  TSCQKCLRT----NDIDNIG-DSRHLSFFEMLGNFSFGGYTKADAIAWAWEFITAAEHLG 121

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + RLY+TV+++D+EA +LW    G++ D I R+   DNFW+   TGPCGPCSEI+FDQ
Sbjct: 122 LPKDRLYMTVFEDDDEAIELWHAQ-GVAYDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQ 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G    G  P   ++GERY+E WNLVF Q+++Q       LP  +IDTGMGLER+A ++Q 
Sbjct: 181 GPAFEGERP--GDDGERYLEFWNLVFTQYDRQEDGSMPELPHRNIDTGMGLERIAAIMQH 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +NY+ D+ + LI   EQ+ G++Y        + R++ DH R+ +F+I DGILP+NEGR
Sbjct: 239 EGSNYEGDVLRTLIGVGEQLAGVRYREGAATDTSLRILADHSRAVTFMIGDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + RL+G     +      +   M   YP+L++ + LI+  + +E+ER
Sbjct: 299 GYVLRRLLRRAVYHGRLMGVHGSFLPTYAHEVTRLMADVYPQLVENQALIDGIISAEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           FG TLD G   L   L  L   E L+G+VAF+L+DT+G P+D+ ++I  A G   +D+ +
Sbjct: 359 FGATLDAGEGNLTAALGRLDAGEALSGEVAFRLHDTYGFPIDLTREIAAAAGHE-VDMAA 417

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+ A+ +QR RAR  +     G +  +W SL ++ G T+F GYD                
Sbjct: 418 FDGAMAKQRERARQAANRDAWGASNNVWVSLSDRLGETEFCGYDEDTVEG---------- 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V AIV+ G  V+ A  G+ VEVV D+T FY E GGQ GD+G  + +
Sbjct: 468 ------------ARVLAIVRDGSEVDVACRGEHVEVVLDRTSFYGEMGGQQGDSGKLVCE 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              L ++D + +  G   H   V  G LR   S+   ID+  R  +  NH+ATHLL  AL
Sbjct: 516 DATLAVSDAKHRDGGFVSHVGEVTAGELRVGESVRAVIDHGRRELIRRNHTATHLLDAAL 575

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HVSQ GS + P  LRFD TH + +++ E+  +E  VN  I    PVVT +M  E
Sbjct: 576 KRVLGDHVSQAGSLVGPSRLRFDFTHFEAMSAEEMARVEGMVNAEIFAAEPVVTTVMGIE 635

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A ASGA AL G KY D VRVVS    D    S  LCGGTH  +T E+ L  IVSE S+ 
Sbjct: 636 EAKASGAVALFGEKYGDVVRVVSTGASD-EPFSRELCGGTHARNTAELGLFKIVSEGSVG 694

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + +RR+EA+T   A  +L  +  ++  +A+ L+    +V  RVE++  E  + +      
Sbjct: 695 SNVRRLEAVTSMGAIEYLDERLAQIDQVAAGLRCRPSDVAARVEQLKAEKAETEHKLRAA 754

Query: 778 K---LQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
                   V D     I       +   +  V  KEL+S  D+++ ++      ++    
Sbjct: 755 LTGGSSNAVADAIASAIDRGAYRLVLARLDGVSGKELRSAWDSVRDRLGVDCACVLASES 814

Query: 833 EKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K  +L   T+  +   F+A D+ R  A ++GG G GG+P MAQ+GG + +  D A+  
Sbjct: 815 DGKVGLLAAGTDGAVSAGFSAGDIIRSVAGLVGGRG-GGKPAMAQAGGSDPSGIDAALEE 873

Query: 892 VASFL 896
               L
Sbjct: 874 AGRLL 878


>gi|260361824|ref|ZP_05774840.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|308114481|gb|EFO52021.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030]
          Length = 788

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/832 (41%), Positives = 485/832 (58%), Gaps = 67/832 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTDVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG P    E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMAILNEALDNLD-GKVLDGETVFKLYDTYGFPADLTNDVAREREF-A 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY            
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNAAIKVDTQTEFCGY------------ 460

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                      +    SS V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 461 -----------VGTKGSSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK       HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTEAGVFRVEDTQKLGN-AIAHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A   +  Q  K +               ++ E  ++ + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQAAKYEE--------------KLAESAQKAKTLEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
              K K ++   +         ++     +   +   DSK L++++   + K
Sbjct: 730 ELQKLKDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVTTSRTK 781


>gi|205830053|sp|A6TQZ4|SYA_ALKMQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 880

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/908 (37%), Positives = 528/908 (58%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  FL+F+++  H +  S  L+P ND +L+  N+GM P KN F+G E P  + +
Sbjct: 4   MGLNEIRKLFLDFYEEKEHYVQSSYPLVPHNDKSLLLINAGMAPLKNYFSGVETPPSKRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D++NVG+T+RH TFFEMLG+F+FG YFK  +IQ  W+  TK  ++ 
Sbjct: 64  ATCQKCIRTG----DIENVGKTSRHATFFEMLGSFAFGDYFKTESIQWGWEFATKYLEMP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +++ +VY+ED+EA+ +W+    +  ++I+R+   DNFW +   GPCGPCSE++FD+G+
Sbjct: 120 EDKIWASVYEEDDEAYGIWENQIKMPKERIVRLGKEDNFWEIG-VGPCGPCSELYFDRGD 178

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G        + +R++E WN VF QF++       +LP  +IDTGMGLER+A ++Q+
Sbjct: 179 KYSCGHDDCKPGCDCDRFVEFWNHVFTQFDKDEAGNYNLLPNPNIDTGMGLERVACIMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +++D  KH++ +    T  +Y  +    ++ R+I DHLRS +F+I DGILP+NEGR
Sbjct: 239 VDSIFEVDTMKHILNSVCTATNTQYNKDVKTNISLRIITDHLRSITFMIGDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG ++  +  L+  +    G AY EL++ K  I++ ++ E++R
Sbjct: 299 GYVLRRLLRRAARHGKLLGVSKSFLYELMDTVTETYGGAYSELVEKKDYIKKIIQVEEDR 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+ +GL +L+  +  +    + +LNG  AFKLYDT+G PLD+ ++IL  R +  +D 
Sbjct: 359 FQETIHQGLEILNQHIEEMIGKSENMLNGTYAFKLYDTYGFPLDLTKEILEEREMT-VDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR+RAR    G  +   ++  F   +K   T F GY+ LR           
Sbjct: 418 SEFESEMEKQRNRARKARSGGDTEGWKEDAFDALDKNIQTSFKGYETLR----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V AI+++ + V    +G++V +V D+TPFY E+GGQ+GD G   
Sbjct: 467 ------------AEGKVLAIIEENQSVNLTSAGKEVVIVLDKTPFYPESGGQIGDIGHIF 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    Q+ D ++        +  + RGIL+   S+   +D + R     NH+ATHLLH 
Sbjct: 515 KDEFEGQVLDTKQGKNQRIHQYIKILRGILQVGDSIQGEVDKEPRHNTERNHTATHLLHK 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  I+G HV Q GS +TP+ LRFD +H + ++SA+L  +E  VN  I   L V T   +
Sbjct: 575 ALKGIIGEHVEQAGSLVTPEKLRFDFSHFEGLSSADLSKVELEVNQEILNALNVDTVEAS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL G KY D VRVV       G +S  LCGGTHV ++ EI    I+SE+ 
Sbjct: 635 LEEAKKMGAMALFGEKYGDDVRVVKT-----GDYSVELCGGTHVKNSSEIGTFLILSETG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TGQ A  H+  +   ++ + S LK     +  RVEE+ +E ++      
Sbjct: 690 VAAGVRRIEAVTGQEAYHHIKREQGLIQDIESLLKTKGEQLTKRVEELLKETKEKDKELQ 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L  + +         I   N + H   E   ++L+++ D+L++KI SG+I L   
Sbjct: 750 QLKSKLANQSIDEILNQIEVIEGTNLLVHHFGEQSMEDLRNIGDSLKQKIGSGVIALGAE 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S + KAS  +  T+D++++  ++ ++ R  AK+ GGGG GGRP MAQ+GG N  K   A+
Sbjct: 810 SND-KASFFVTATKDVVEKGVHSGNMIREVAKIAGGGG-GGRPDMAQAGGKNPEKIQSAL 867

Query: 890 AGVASFLK 897
           + V   LK
Sbjct: 868 SIVKGLLK 875


>gi|307243232|ref|ZP_07525403.1| alanine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306493360|gb|EFM65342.1| alanine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 878

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/906 (36%), Positives = 515/906 (56%), Gaps = 49/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR+ F +FF+   H +  S SLIP ND +L+  NSGM P KN F+G E P    ++T
Sbjct: 6   LNEIRSRFTKFFESKEHYIAKSHSLIPSNDKSLLLINSGMAPLKNYFSGVEIPPKNRMST 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQKC+R G    D++NVG T RH TFFEM+GNFSFG YFK+ AI  AW+ +T   ++ + 
Sbjct: 66  VQKCIRTG----DIENVGVTARHATFFEMMGNFSFGDYFKKEAIAWAWEFITVWLEIPEE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TVY+ D+EA+ LWK + G   +KI+R+  +DNFW +   GPCGPCSEI+FD+GE  
Sbjct: 122 KLWVTVYESDDEAYNLWKDMIGFPEEKIVRLGKDDNFWEIG-LGPCGPCSEIYFDKGEKY 180

Query: 184 PGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G        + +R++E WNLVF QF+++       L   +IDTGMGLERMA V+QE  
Sbjct: 181 GCGCEDCKPGCDCDRFLEFWNLVFTQFDRKEDGSYGELDHKNIDTGMGLERMACVMQEVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +++D  + ++    Q+ G+ Y  +     + R+I DH+RS +F++ DGILP+NEGRGY
Sbjct: 241 TIFEVDTIRSVLNRVCQLAGITYGQDAKKDKSVRIITDHIRSVAFMVGDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG  +  +  ++  +    G AYPELI+    I++ +  E+E+FG
Sbjct: 301 VLRRLLRRAARHGRLLGIKDNFLNEIVEVVFDTCGQAYPELIEKNDYIKKVIGIEEEKFG 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TL++GL +L      L     + ++G+ AFKLYDT G PLD+  +IL   GL  +D   
Sbjct: 361 ETLEQGLEILKSYTEDLVAGGGDTISGEQAFKLYDTFGFPLDLTMEILEDEGLK-VDTEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++ Q+ RARA          ++   +  E   ++ F GY  L              
Sbjct: 420 FEKEMQAQKDRARAARGNTEGDAWKEDPLTSLEDASSS-FDGYHNL-------------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S +KA+V    +V+    G +  ++ D+T FY   GGQ+GD G  + D
Sbjct: 465 ---------VKASTIKAMVADNALVDTLEEGLEAAIILDETSFYPNGGGQVGDKGQILSD 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D  K A G   H   +  G L     +   +D   R   + NH+ATHLLH AL
Sbjct: 516 TGLFEVEDTVKGANGSIKHIGRIVSGSLTKGEKVETRVDKALRMDAARNHTATHLLHKAL 575

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS + P  LRFD+TH + +T  E+  +E  VN+ I +  PV   +MN  
Sbjct: 576 KEVLGDHVNQAGSLVEPYRLRFDITHFEAMTKEEISRVEAMVNEFILEAHPVTAELMNIN 635

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA AL G KY + VRVV +     G  S  LCGGTH+ +T ++ +  IVSE  + 
Sbjct: 636 EARAMGAMALFGEKYGEEVRVVKM-----GDCSVELCGGTHLDNTSQVGMFKIVSEGGVA 690

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEAITG+    +++ +D  + +++  +K  + N+V R   + +E ++L+      
Sbjct: 691 AGVRRIEAITGRAVYQYMLAKDSLINNISDIMKTREDNLVVRANSLVDENKQLEKEVHDL 750

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++++++          I  V  ++    ++D   L+ V D L+ K+ + +++L  I+ 
Sbjct: 751 KSKISMQNAGNALDDSLDIKGVKLLTAKYEDMDIDTLREVADNLRDKLGTSVVVLANIAG 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K + +   ++D +D+  +A ++ R  AK+ GG G GGRP+MAQ+GG +    DQA+A 
Sbjct: 811 D-KINFVATASKDAIDKGAHAGNIVREVAKIAGGKG-GGRPNMAQAGGSDKTMVDQALAS 868

Query: 892 VASFLK 897
               ++
Sbjct: 869 AQKVVE 874


>gi|229496595|ref|ZP_04390309.1| alanyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316492|gb|EEN82411.1| alanyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 873

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/916 (35%), Positives = 478/916 (52%), Gaps = 69/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  F+ FF +  H ++PS+ ++   DPTLMFTN+GM  FK+I  G  +  Y  +
Sbjct: 1   MTANEIRAAFVAFFAEKQHHIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVEAKYPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L +   + 
Sbjct: 61  ADAQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAISWAWEFLHERLGIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY T+++         D EA   W +   L  ++I+     DNFW M ETGPCGPCS
Sbjct: 121 ADRLYATIFEGAESDGSERDNEAASYWGRF--LPQERILDGNKKDNFWEMGETGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + +EIWNLVFMQ+ +       +LP   IDTGMG
Sbjct: 179 EIHIDLRSDEERMQQSGRELVNRDHPQVVEIWNLVFMQYNRMADGSLSLLPHKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   +Q K +NYD D+F+ LI A  Q++G+ Y       V  RV+ DH+R+ +F I 
Sbjct: 239 FERLCMAMQGKRSNYDTDVFQPLIGAVAQLSGIPYGKEESSDVAMRVVADHVRTIAFAIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG  E  M  LLP L   MG AYPELI  + L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGRREAFMYALLPTLIESMGGAYPELIAQREL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           I++ +R E+E F +TL+ G+ LLD  +  LG    L+G  AF LYDT G PLD+ + IL 
Sbjct: 359 IQKVMREEEESFLRTLEAGIKLLDKKIEELGNKGQLSGHDAFVLYDTFGFPLDLTELILR 418

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G+  +D   F++ + EQ++RAR+      +      W +L E  G T F+GYD     
Sbjct: 419 EHGMT-LDQKGFDREMAEQKARARSA-----AQLETDDWVTLAE--GETLFVGYDQTEAD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   R V  +                                 +VV   TPFYAE GG
Sbjct: 471 CSILRYRHVKQKNK----------------------------DFYQVVLSATPFYAEMGG 502

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD+G  + +          K+   + VH   + +       +    ID + RR    N
Sbjct: 503 QVGDSGILVDEEGMRYAIVDTKRENNLPVHL--MPKLPNDPGQTFRAEIDQERRRMAEAN 560

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS ++P+ LRFD +H   +T  E++ +E+ V   +  +
Sbjct: 561 HTATHLLHQALRMVLGEHVEQKGSFVSPEVLRFDFSHYNKLTPEEIRQVEELVTQAVRAD 620

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            P    R +   +A A GA AL G KY + VRV+          S  LCGGTHV STG I
Sbjct: 621 YPREEHRNIPIAEARAMGAMALFGEKYGEEVRVMKYG------TSIELCGGTHVPSTGMI 674

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IVSESSI AG+RRIEA+T   A + L  Q++ LK + + L  +  +VV  ++++  
Sbjct: 675 GAFRIVSESSIAAGVRRIEAVTATNAEAFLYKQEDTLKEIKALLNNTP-DVVKALQKLLS 733

Query: 766 EYRKLQLIHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVD-SKELKSVMDALQKKIQ 821
           E   L+      +    +   ++L    I    +   ++   + +  +K +   L+ ++Q
Sbjct: 734 EESALKSELDTLQRSHAIRLKKELLASSIERSGYRLFVLQGEEKADIIKDIAFQLRGELQ 793

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              + +   ++  +  + ++++E+ +    +A +L + +A+++ GG GGG+PH A +GG 
Sbjct: 794 EPFVFVAATTEGARGLLSVMLSEEAVTLGLHAGNLVKEAARLIQGG-GGGQPHFATAGGK 852

Query: 881 NGNKADQAIAGVASFL 896
           + N   QA+  + S +
Sbjct: 853 DANGLPQALELILSRV 868


>gi|319892672|ref|YP_004149547.1| Alanyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162368|gb|ADV05911.1| Alanyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
          Length = 876

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/914 (38%), Positives = 515/914 (56%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASDIRQMYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREVPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  +
Sbjct: 61  PRIVNAQKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSER 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ LW  + GL+ D+IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMAMEPEKLYVTIHPEDTEAYDLWTNVVGLTEDRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDSAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPSKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q+   NY+ DLF  +I   E ++G KY  + +N V  +VI DH+R+ +F I+DG 
Sbjct: 234 MTSISQDVRTNYETDLFMPIIGQVEAISGKKYLVDKDNDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I   
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLEINEPFMYQLVEIVADIMEPYYPNVKEKGDFIARV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++      +E + G+ AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEEGLAILNDLIKQAKSSNETIAGEDAFKLYDTYGFPIELTEEITLNEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           LA ID+ SFN  +E QR RAR       S   +     LKE    ++F+GY+        
Sbjct: 414 LA-IDMDSFNDHMEAQRDRARKARQSSQSMQVQSEV--LKEINTVSKFLGYEAFETH--- 467

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  IV+ GE V  A +G+ +  + DQTPFYA +GGQ+ 
Sbjct: 468 --------------------AKITDIVRDGERVTMADAGETIHFILDQTPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G        +Q+T+V K   G  +H  +V+ G +R    +  TID Q R  +  NHSA
Sbjct: 508 DKGTVSNAQFEIQVTEVIKAPNGQHLHTGVVQFGEVREAAEVTATIDRQARTAIMKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  D LRFD +H  P+T+ E+K +E  VN+ I  ++PV
Sbjct: 568 THLLHAALKKVLGEHVNQAGSLVDSDRLRFDFSHIAPMTAKEMKQVEQMVNEEIWNSIPV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + MN EDA A GA AL G KY D VRVV+++       S  LCGGTHV +T EI L  
Sbjct: 628 EIQEMNIEDAKAKGAMALFGEKYGDIVRVVNMQP-----FSIELCGGTHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYR 768
           I SES   AG+RRIEA+TGQ A  +L    ++  +L   +K      V+ +VE++    +
Sbjct: 683 ITSESGTGAGVRRIEAVTGQNAFLYLEHYLDQFNALKQQVKAKSDAQVIEKVEQLQYNEK 742

Query: 769 KLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L+        A  +L++         I D++ +   +   ++K +++ MD  + K+Q  
Sbjct: 743 TLKQTIEDKNKALNELKMGNIKDQVETINDMSVLITEVEVDNAKAMRTTMDDFKSKLQDS 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L       K S++  V + L DR  A D+ +  A V+ GG GGGRP MAQ GG    
Sbjct: 803 IIVLAS-DVGGKVSLIASVPKALTDRVKAGDIIKNMAPVV-GGKGGGRPDMAQGGGTEPG 860

Query: 884 KADQAIAGVASFLK 897
           K  +A+  + +++K
Sbjct: 861 KITEALQFIKNYIK 874


>gi|288574979|ref|ZP_06393336.1| alanyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570720|gb|EFC92277.1| alanyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 878

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/907 (37%), Positives = 517/907 (57%), Gaps = 47/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  F++F+   G +   S SL+P  DPTL+FT +GMVPFK  + G  +P   + 
Sbjct: 4   KSGKEIRRLFVDFWVSKGAKHYDSFSLVPE-DPTLLFTIAGMVPFKKYYLGIAEPDVDSA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR     ND+DNVGRT RHHTFFEMLGNFS+GGYFK+ +I   W+ LT+   LD
Sbjct: 63  VTSQKCVRT----NDIDNVGRTARHHTFFEMLGNFSWGGYFKKESITWGWEFLTEVIGLD 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+Y T+Y +DEEAF +W K  GL   +I+R   ++NFW M   GPCGP SEI +DQG 
Sbjct: 119 PDRMYATIYKDDEEAFDVWNKDVGLPDSRILRFGEDENFWFMGPQGPCGPDSEILYDQGP 178

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G       E +RY+EIWN VF Q+++Q       LP+ +IDTGMGLER+ +++Q  
Sbjct: 179 AFSCGPDCKPGCECDRYLEIWNHVFTQYDRQEDGSLLPLPRKNIDTGMGLERLTSLVQGV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +N+++ DLF+ ++     + G+ Y       +  +VI DH+R+ SF+IADGILP+N+G+G
Sbjct: 239 SNDFETDLFRPIMDHVCDMAGIGYGDGLQGDMAAKVISDHIRAVSFMIADGILPSNDGQG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  Y RL+G  +  +  L+P +   M   Y EL+  +L IE+ +  E++RF
Sbjct: 299 YVLRRLLRRAARYGRLIGLKKAFLTDLIPNVMDIMADPYRELLDNRLTIEQVVAVEEKRF 358

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           G+TL++G  LL   +S +      IL GDVAF+LYDT+G PL++ ++I   +GL+ +D  
Sbjct: 359 GRTLEQGSDLLHQEISSVFAGDGSILPGDVAFELYDTYGYPLELTREICEEKGLS-VDED 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + +E QR RAR+ S    S  T  ++  L  ++G T F+GYD L             
Sbjct: 418 GFRREMEVQRERARSSSKQANSVMTGDLYAELLSEHGPTPFLGYDSLE------------ 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      + + +  ++++G++V+ A +G  VE +  +TPFYAE GGQ+GD G   G
Sbjct: 466 -----------LEADLTVLMKEGKVVDSASTGDSVEFLLSRTPFYAERGGQVGDQGFVKG 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG  +++ D    A  + VH  IV  G +++   +   +D   R  ++ NH+ATHLLH +
Sbjct: 515 DGFIVEVEDTIHPAGDLIVHRGIVTSGTVKSGCEVRAMVDKDRREAITKNHTATHLLHES 574

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV QNGS ++   LRFD TH +P++S EL  +E  VN  I  N  +     + 
Sbjct: 575 LIRVLGGHVRQNGSLVSDRFLRFDYTHFEPLSSGELDEVELMVNQEIQNNKTIKVDETDL 634

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
             A   GA AL   KY D+VRVVS+        SS LCGG HV +TGEI L  I+++ SI
Sbjct: 635 ATAKNLGAKALFEEKYGDKVRVVSISE-----FSSELCGGVHVCATGEIGLFKIINDESI 689

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +GIRRI A+TG  A  +       LK L+S L V    ++ +++ + EE R+LQ    +
Sbjct: 690 GSGIRRITAMTGMNAFRNYQNITGTLKELSSNLGVRPARLIEKIKSMDEENRELQKKLQR 749

Query: 777 RKLQLNVEDLSCHKIA-----DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
             ++  ++DL    +       V+     I  V   +L+ V D+++ K    + +L+   
Sbjct: 750 YTIRSAMDDLRESVVKTDIGQGVSLYVASIEGVTPDQLREVGDSIKDKDTGSVTLLMSSD 809

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            + +  ++ +V  D +++  +   + +  A  L GG GGGRP MAQ+GGP  +     + 
Sbjct: 810 GD-RTQMVCMVGGDAVEKGLHGGKIVKEVAA-LFGGKGGGRPTMAQAGGPKIDDMKDILD 867

Query: 891 GVASFLK 897
              + +K
Sbjct: 868 KAVAIVK 874


>gi|237750646|ref|ZP_04581126.1| alanyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
 gi|229373736|gb|EEO24127.1| alanyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
          Length = 897

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/920 (36%), Positives = 514/920 (55%), Gaps = 70/920 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  ++EFF+  GH++  S  L+P +D +L+FTN+GMV FK+IFTG+   P     T+ 
Sbjct: 17  DIRAKYIEFFKSKGHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPSPNIATSS 75

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+    D+  
Sbjct: 76  QLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEILGFDKSL 135

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+T+++ D+EAF+LW +   + + +I R+   DNFW M +TGPCGPCSEI+ DQG E  
Sbjct: 136 LYVTIHESDDEAFELWCE--HIESSRIKRMGDKDNFWQMGDTGPCGPCSEIYVDQGAEFF 193

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    EG+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + + NN
Sbjct: 194 HSEEDYFGGEGDRFLEIWNLVFMQYERSADGTLTPLPKPSIDTGMGLERVIALKEGEINN 253

Query: 244 YDIDLFKHLIQASEQVTGMKY--------------------EGNNIVNHRVIVDHLRSSS 283
           +D  LF  ++Q  +++TG  Y                       +I + RVI DH R+ +
Sbjct: 254 FDSSLFAPIMQCIKELTGKSYYRDSVLLKNTMGFAKDIIDSCKKDIASFRVIADHARAVA 313

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           FL+A G+    EGRGYVLRRI+RRA+ +  LLG  +  +  ++  +C  MG  Y  LI+ 
Sbjct: 314 FLLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDSMGGHYSYLIER 373

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIM 401
           K  ++E  R+E+ERF +T++ G+ L    L  + +      NG++AFKLYDT+G PLD+ 
Sbjct: 374 KNALQEQCRAEEERFFETIESGMALFQTELDSMRQKNEKSFNGEIAFKLYDTYGFPLDLT 433

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           QD+L   GL G+D+  F + ++EQ+ R++AH  G G    +  + +L  +YG  +F+GY+
Sbjct: 434 QDMLRELGL-GVDMQGFEKCMQEQKDRSKAHWKGSGDSVKDGDFNALLSEYGKNEFVGYE 492

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPF 520
            +                        V S + A++    + VE   +GQ+  V+ + TPF
Sbjct: 493 RM-----------------------SVESKILALLDSNFKRVESLQAGQEGWVMLESTPF 529

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y E+GG +GD G    D   +      +K  G+ +   +    +L+    +   +D    
Sbjct: 530 YPESGGPVGDKGILKNDSHIVTQVLDTQKYFGLNLSKVVATS-MLKVGDLVKAQVDSSR- 587

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            ++  +HSATHLLH+AL  ILGSH++Q GS +  + LRFD +H K ++  EL+ IE  VN
Sbjct: 588 FEIIKHHSATHLLHYALRQILGSHIAQAGSLVEANRLRFDFSHPKALSVDELEQIESLVN 647

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           + IA++ P +   M  E A A GA AL G KY + VRV+++        S  LCGG H+ 
Sbjct: 648 EEIAESSPQICETMGIEQAKAKGAMALFGEKYGESVRVITLGD------SVELCGGIHIH 701

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T EI   YIV ESS+ +G+RRIEA+ G+ A ++     E +KSL   LK    +V+  V
Sbjct: 702 NTAEIGSFYIVRESSVSSGVRRIEAVCGKAAYNYGKAALESIKSLKEQLKAQ--DVLQGV 759

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            ++    +  +   +  K + +V+ L   ++  V  +   +  V++KE K ++D  + + 
Sbjct: 760 AKLQNALK--EARESANKAKQSVKSLDYEEVNGVKLIVLKLDLVEAKEAKDIIDRAKNEN 817

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +  + +L+      K S+   V    +    A    +  A++L GG GGGR   A +GG 
Sbjct: 818 EK-VAILLVTESGGKVSLTAGVKG--VSSLKAGAWVKQVAQIL-GGNGGGRDDFATAGGK 873

Query: 881 --NGNKADQAIAGVASFLKK 898
               +K  +A+    S  ++
Sbjct: 874 VTESSKVQEALDLAKSIARE 893


>gi|150390222|ref|YP_001320271.1| alanyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149950084|gb|ABR48612.1| alanyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 893

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/908 (37%), Positives = 528/908 (58%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  FL+F+++  H +  S  L+P ND +L+  N+GM P KN F+G E P  + +
Sbjct: 17  MGLNEIRKLFLDFYEEKEHYVQSSYPLVPHNDKSLLLINAGMAPLKNYFSGVETPPSKRM 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D++NVG+T+RH TFFEMLG+F+FG YFK  +IQ  W+  TK  ++ 
Sbjct: 77  ATCQKCIRTG----DIENVGKTSRHATFFEMLGSFAFGDYFKTESIQWGWEFATKYLEMP 132

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +++ +VY+ED+EA+ +W+    +  ++I+R+   DNFW +   GPCGPCSE++FD+G+
Sbjct: 133 EDKIWASVYEEDDEAYGIWENQIKMPKERIVRLGKEDNFWEIG-VGPCGPCSELYFDRGD 191

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G        + +R++E WN VF QF++       +LP  +IDTGMGLER+A ++Q+
Sbjct: 192 KYSCGHDDCKPGCDCDRFVEFWNHVFTQFDKDEAGNYNLLPNPNIDTGMGLERVACIMQD 251

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +++D  KH++ +    T  +Y  +    ++ R+I DHLRS +F+I DGILP+NEGR
Sbjct: 252 VDSIFEVDTMKHILNSVCTATNTQYNKDVKTNISLRIITDHLRSITFMIGDGILPSNEGR 311

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG ++  +  L+  +    G AY EL++ K  I++ ++ E++R
Sbjct: 312 GYVLRRLLRRAARHGKLLGVSKSFLYELMDTVTETYGGAYSELVEKKDYIKKIIQVEEDR 371

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+ +GL +L+  +  +    + +LNG  AFKLYDT+G PLD+ ++IL  R +  +D 
Sbjct: 372 FQETIHQGLEILNQHIEEMIGKSENMLNGTYAFKLYDTYGFPLDLTKEILEEREMT-VDE 430

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR+RAR    G  +   ++  F   +K   T F GY+ LR           
Sbjct: 431 SEFESEMEKQRNRARKARSGGDTEGWKEDAFDALDKNIQTSFKGYETLR----------- 479

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V AI+++ + V    +G++V +V D+TPFY E+GGQ+GD G   
Sbjct: 480 ------------AEGKVLAIIEENQSVNLTSAGKEVVIVLDKTPFYPESGGQIGDIGHIF 527

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    Q+ D ++        +  + RGIL+   S+   +D + R     NH+ATHLLH 
Sbjct: 528 KDEFEGQVLDTKQGKNQRIHQYIKILRGILQVGDSIQGEVDKEPRHNTERNHTATHLLHK 587

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  I+G HV Q GS +TP+ LRFD +H + ++SA+L  +E  VN  I   L V T   +
Sbjct: 588 ALKGIIGEHVEQAGSLVTPEKLRFDFSHFEGLSSADLSKVELEVNQEILNALNVDTVEAS 647

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL G KY D VRVV       G +S  LCGGTHV ++ EI    I+SE+ 
Sbjct: 648 LEEAKKMGAMALFGEKYGDDVRVVKT-----GDYSVELCGGTHVKNSSEIGTFLILSETG 702

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TGQ A  H+  +   ++ + S LK     +  RVEE+ +E ++      
Sbjct: 703 VAAGVRRIEAVTGQEAYHHIKREQGLIQDIESLLKTKGEQLTKRVEELLKETKEKDKELQ 762

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L  + +         I   N + H   E   ++L+++ D+L++KI SG+I L   
Sbjct: 763 QLKSKLANQSIDEILNQIEVIEGTNLLVHHFGEQSMEDLRNIGDSLKQKIGSGVIALGAE 822

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S + KAS  +  T+D++++  ++ ++ R  AK+ GGGG GGRP MAQ+GG N  K   A+
Sbjct: 823 SND-KASFFVTATKDVVEKGVHSGNMIREVAKIAGGGG-GGRPDMAQAGGKNPEKIQSAL 880

Query: 890 AGVASFLK 897
           + V   LK
Sbjct: 881 SIVKGLLK 888


>gi|283955931|ref|ZP_06373421.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792591|gb|EFC31370.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 842

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/896 (38%), Positives = 506/896 (56%), Gaps = 60/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEVTPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S + A++   E  E +       V+ + TPFYA +GGQ  D          +  
Sbjct: 457 ----CESKILALL-DEEFKEVSTLKDAGWVMLENTPFYATSGGQSAD-------SGFIAK 504

Query: 544 TDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
            +V    +   ++ + ++ G   +    +   ID + R Q++ +HSATHLLHHAL  ILG
Sbjct: 505 REVLDTQKFFNLNLSFIKAGEELKVGDIVHAKIDTEKREQIARHHSATHLLHHALREILG 564

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A  S
Sbjct: 565 SHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKS 624

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RR
Sbjct: 625 GAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVRR 678

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A   +  Q E+L      LK +         +I    +KL+      K +L 
Sbjct: 679 IEAVVSKAALEFVKNQLEELSKAKDELKNN---------DILSGLKKLKNEILSLKNELK 729

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
               +     ++  +   +  VD+ ++K+++D  + K    +I+L+ + K++K ++   V
Sbjct: 730 NSSKTELDSKNIQGVEICVKRVDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV 788

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +D+     A  L + +A++L GG GGGR   A +GG + NK D+A+      ++K
Sbjct: 789 -KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLNKIDEALKQSLETIEK 840


>gi|319901112|ref|YP_004160840.1| alanyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
 gi|319416143|gb|ADV43254.1| alanyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
          Length = 872

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 486/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHVDSRTEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQYNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y       +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIADMAGTTYGKNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG +YPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYRLLPVLIENMGGSYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEVSGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   D+  FN  +E+Q+SRAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DLNEFNAEMEQQKSRARNA-----AAIETGDWITLKE--GTTEFVGYDFT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   + + D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIDVIDTKKENNLPIHI---TKKLPEHLEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ IE   N  I
Sbjct: 560 AANHSATHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEELRQIEHIANAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R M  EDA   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRDMPIEDAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    +    + L+ L +    +  ++ G + +
Sbjct: 674 GNIGMVKIVSESSVAAGVRRIEAYTGARVEEMMDTIQDTLRDLKALFNNAP-DLAGTIHK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       K K     + L  S  ++  V  +      + ++ +K++   L+
Sbjct: 733 YIEENAGLKKQVEDFMKEKESQLKDKLMNSIQEVNGVKVIKFCAP-LPAETVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GQITEDLFFVAGTEYEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 851 AGGKNVDGLNAAVDKVIEL 869


>gi|312887198|ref|ZP_07746802.1| alanyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311300510|gb|EFQ77575.1| alanyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 927

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/971 (33%), Positives = 500/971 (51%), Gaps = 122/971 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF   GH ++PS+ ++  NDPTLMFTN+GM  FK+IF G+E   +  V
Sbjct: 1   MTAQEIRQAFLDFFASKGHTIVPSAPIVVKNDPTLMFTNAGMNQFKSIFLGEEPVKFPRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q+C+R  GKHNDL+ VG  + HHT FEMLGN+SFG YFK+ AI  +W+LLT+ + LD
Sbjct: 61  ADTQRCLRVSGKHNDLEEVGIDSYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEIYKLD 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T ++ DE        E  +LW++   ++ D I+     DNFW M ETGPCGPCS
Sbjct: 121 KSRLYVTYFEGDEKEGLAADTETLELWREF--VADDHILPGNKKDNFWEMGETGPCGPCS 178

Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI +D           G    +   +  +EIWN VFMQF +        LP   +DTGMG
Sbjct: 179 EIHYDGRTDAERAQIDGATLVNGVDDSVMEIWNDVFMQFNRLKDGSLQPLPAKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------------------- 267
            ER+  ++Q KT+NYD D+F+ LIQ   + +G+ Y  +                      
Sbjct: 239 FERLVRIMQGKTSNYDTDVFQPLIQFIAEKSGIVYGPHPALSKGEGSDLQASEAHALKVL 298

Query: 268 ----------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LG 316
                       V  RV+ DH+R+ SF IADG LP+N   GYV+RRI+RRA+ Y+   L 
Sbjct: 299 SFGEDLVEAKTDVAMRVMADHIRAISFAIADGQLPSNNKAGYVIRRILRRAVRYSYQYLN 358

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
           + EP +  L+P L  +    + EL+  K  +++ +  E+  F +TLDRG+   +  +   
Sbjct: 359 FKEPFLNQLVPILAQQFVGVFTELVNQKDFVQKVVLEEEVAFLRTLDRGINKFEEFIQKE 418

Query: 377 GKD------------------------EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            ++                         I+ G+ AF+L DT+G PLD+ + +    G   
Sbjct: 419 AQEIELIKNLANDSSSSLPTAFKDSKTTIIRGNFAFELSDTYGFPLDLTELMAREIGWT- 477

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  +  AL +Q+SR+RA          +   + L ++    +F+GY        + + 
Sbjct: 478 VDVEGYETALAQQKSRSRAA------TAIDTGDWILLKEDDTVEFVGYTETETIAHVVKY 531

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           RKV                            +A   ++ ++V D+TPFYAE+GGQ+GDTG
Sbjct: 532 RKV----------------------------KAKGKEQYQIVLDKTPFYAESGGQVGDTG 563

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             I     +      KK  G+ VH    ++     + +L   +D   R+  + NHSATHL
Sbjct: 564 ELIFPDGEIVPVTDTKKENGLIVHFV--DQLPEDIDDALTAMVDVDKRKATNNNHSATHL 621

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LGSHV+Q GS +  + LRFD +H   +T  E+  IE  VN+ I +N+ V  +
Sbjct: 622 LHAALKEVLGSHVNQKGSLVNNEYLRFDFSHFSKVTDEEIARIEAIVNERIRENILVDIQ 681

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            + +E+AIA GA AL G KY D VRVV+++ +     S  LCGGTHV STG+I    I++
Sbjct: 682 ELPKEEAIAMGANALFGEKYGDTVRVVTMDMK----FSIELCGGTHVQSTGQIGFFKIIA 737

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ AG+RRIEAITG     +   Q + ++ L   LK +  NV   VE + +E  +L+ 
Sbjct: 738 ESAVAAGVRRIEAITGVAVEQYFNEQGKLIQQLKELLK-NPKNVAKSVEGLLDENSRLKK 796

Query: 773 IHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K   +               I  +NF++  +   ++  +K++  +L+  + +  ++L
Sbjct: 797 ELEKSVYEKAAGLKQVLAAKAEAINGINFIAQQVDLPNADAIKNLAYSLKDIVPNLFLVL 856

Query: 828 VGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
                + K ++ +++ E L+     NA ++ R  AK + GG GGG+P  A +GG + +  
Sbjct: 857 -TAQIDGKPNITVMIEESLVKEKGLNAGNIIRELAKEVQGG-GGGQPFYATAGGKDVSGL 914

Query: 886 DQAIAGVASFL 896
            + +    SF+
Sbjct: 915 PRVLDKARSFI 925


>gi|268317116|ref|YP_003290835.1| alanyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262334650|gb|ACY48447.1| alanyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 953

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/982 (34%), Positives = 508/982 (51%), Gaps = 121/982 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR +FL+FF++ GHE++PS+ L+P NDPTL+FTN+GM  FK++F G     Y+  
Sbjct: 5   KSSEQIRQSFLDFFREKGHEIVPSAPLVPQNDPTLLFTNAGMNQFKDVFLGIGTRPYKRA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK  AI+ AW+LL + + LD
Sbjct: 65  ANTQKCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKREAIRWAWELLVERWGLD 124

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY TV++ DE        EA +LWK  + +    I    T DNFW M +TGPCGPCS
Sbjct: 125 PDRLYATVHEGDEALGLEPDVEAAELWKSETSIDPSHIKFCPTKDNFWMMGDTGPCGPCS 184

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G+   +    R IEIWNLVF+Q+          L    +DTGMG
Sbjct: 185 EIHIDLRPDEERRRVPGIELVNAGDPRVIEIWNLVFIQYNALPDGRLEPLKAKHVDTGMG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--------------NHRVI 275
           LER+  VLQ KT+NYD DLF  ++Q + +++                          RV+
Sbjct: 245 LERIVAVLQGKTSNYDTDLFAPILQRAAELSPRDEVRGYDDIRVADERERERIRVALRVV 304

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMG 334
            DH+R+ +F IADG++P N GRGYV+RRI+RRA+ Y    LG+ EP +  L+  L  +MG
Sbjct: 305 ADHIRAIAFAIADGVVPGNTGRGYVIRRILRRAVRYGYQTLGFREPFLYRLVEPLAHKMG 364

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG----------------- 377
             +PE+ + +  +E  +++E+E F  TL  GL   + +L +L                  
Sbjct: 365 RVFPEIERHRAYVERVIKAEEESFLATLGTGLAFFERLLPYLKAAAEGRPIEAIRADLLR 424

Query: 378 -----------------------------KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
                                         ++ + G+VAF L+DT+G P+D+ Q +    
Sbjct: 425 DGQALDLLQKAYVDTSDREAIVEAFLKSAAEKNVPGEVAFLLHDTYGFPIDLTQLMAREE 484

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS---GTTEKIWFSLKEKYGATQFIGYDLLRG 465
           GL G+D+  + + +E QR RARA S    +      E+  +    +   + F+GYD  R 
Sbjct: 485 GL-GVDMARYEELMERQRERARAASTFGAAVLTADEEEAGWKRVSEGEDSVFVGYDTTRV 543

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                   + +                           +   G + E+V DQTPFYAE+G
Sbjct: 544 EDARIRAVRTI---------------------------QTPEGPRHELVLDQTPFYAESG 576

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GDTG        +++ D QK    I      V+R     +  +   +D   R+++  
Sbjct: 577 GQVGDTGVLRVGDEEIRVLDTQKLGGHIVH---YVDRLPKELDAPVEAIVDAARRKRIEK 633

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHLLH AL  ILG+HV Q GS + PD LRFD +H + +T   L+ IE  VN++I +
Sbjct: 634 HHTATHLLHAALREILGTHVQQKGSLVAPDRLRFDFSHFERVTPELLRQIEARVNEVIQR 693

Query: 646 NLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           N+P    R +  E+AIA GA AL G KY DRVRV++ +       S  LCGGTHV++TGE
Sbjct: 694 NVPRIEERDVPYEEAIARGAMALFGEKYGDRVRVITFDPN----FSMELCGGTHVAATGE 749

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + +  I+SE S+ +GIRR+EA+ GQ A   +  Q  +L+   +  K  Q  +   +  + 
Sbjct: 750 LGVFRIISEGSVASGIRRVEALAGQDALDWINRQLTELEQARTQFKSLQRPLDEEIAVLL 809

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE R+L+   A  + +     L+      H++  +  ++  +  +   EL+ +  AL+ +
Sbjct: 810 EEQRRLEKELAALRREQQKARLAKLIEQAHRVNGLRVVTGQLEALSMDELRELAQALRDQ 869

Query: 820 IQ-SGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +   G+ +L     EK K  +   VT+D++ R   A  L    A+++GGGG GGRP +A 
Sbjct: 870 LGREGVAVLGTTDPEKQKVYLAAAVTDDVVARGLEAGRLVGQVARIVGGGG-GGRPTLAT 928

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
           +GG    K  +A+  V   +++
Sbjct: 929 AGGRQPEKLHEALEAVPRLVQQ 950


>gi|315924764|ref|ZP_07920981.1| alanine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621663|gb|EFV01627.1| alanine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 882

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/910 (37%), Positives = 504/910 (55%), Gaps = 53/910 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  L S SL+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 6   LNEIRERYLAFFESKGHLRLKSFSLVPHNDKSLLLINSGMAPMKAYFTGDEVPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D+DNVG+T RH TFFEM+GNFSFG YFK   I  AW+ +T +  +D  
Sbjct: 66  CQKCIRT----PDIDNVGKTARHGTFFEMMGNFSFGDYFKPEVIPWAWEFITDKMGMDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           ++Y+T+Y +D+ A  LW+   G++ D I+R+   DNFW    TGPCGPCSEIF+D+GE  
Sbjct: 122 KIYVTIYLDDDTAHDLWRS-VGVAEDHIVRLGKEDNFWEHG-TGPCGPCSEIFYDRGEAY 179

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R++E WNLVF QF++        L   +IDTGMGLERMAT+LQ   
Sbjct: 180 GCGKPTCGPGCDCDRFVEFWNLVFTQFDRDENDRYTPLDHPNIDTGMGLERMATILQGVD 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  +H++     + G  Y  +    V+ RVI DH+RS +F+I DGI+P+NEGRGY
Sbjct: 240 NIFEVDTIRHVLDYICSLCGEHYGDDAEKDVSIRVITDHIRSVTFMIGDGIMPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  + RLLG     +  +   +    G AYPEL + +  I++ ++ E+ERF 
Sbjct: 300 VLRRILRRAARHGRLLGIKGTFLHDVAKEVVAVSGDAYPELKEKQKTIQKIIQIEEERFD 359

Query: 360 KTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            T+D+GL  L+ +L  L      + I +G  AFKLYDT G P D+ ++I+  RG   I  
Sbjct: 360 ATIDQGLSQLNAMLEKLEAEAPGERIFSGAEAFKLYDTFGFPFDLTREIVEERGF-AIPY 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A++ QR RARA      +       F+         F+GYD L+           
Sbjct: 419 EDFEKAMDAQRERARAARAESDTAVWADDPFNPLGADAVDAFVGYDALKAD--------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           +  ++    +V+EA +G  V V+ DQT FYA++GGQ+GD+G   
Sbjct: 470 --------------GKILGLIVNDTLVDEAKAGDNVLVLLDQTVFYAQSGGQVGDSGVIE 515

Query: 536 GDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R+ ++D +  +    +H+  VE G  +T  +++  ++  +R   + NH+ATH+L
Sbjct: 516 SADGTARIAVSDCRYGSLKRHIHYGKVESGSFKTGQTVISEVNKADRMATARNHTATHML 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q GS ++PD LRFD  H +P+T+ E+  +E  VN +I + +PV    
Sbjct: 576 QKALKQVLGDHVEQAGSFVSPDRLRFDFNHFQPMTAEEIARVETIVNQVILEAMPVTIFE 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + ++A   GA AL G KY + VRVV V     G +S  LCGGTH+++  +  +  I+SE
Sbjct: 636 TDIDEAKKLGAMALFGEKYGNIVRVVRV-----GDYSIELCGGTHLTNAAQAGMFKILSE 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AGIRRIEA TG      +   +  L+ ++  +K +   +V ++ E+ E+ +     
Sbjct: 691 SGVAAGIRRIEAATGMNTYHEMARAEATLRKVSGMVKANPAQLVEKIAELEEQGKAQDRE 750

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K Q           +  +IA V      +  ++  EL+ + D L+ K+ SG I ++
Sbjct: 751 IAALKQQQAGSAAGEIAQNIVEIAGVKAAIAGVDGMEMDELRELSDRLKDKMGSG-IAVI 809

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G     K + +   T+DL+ R F+A +L R  A+V GGGG GGRP MAQ+GG    K   
Sbjct: 810 GTVNGGKINFIATATKDLVKRGFHAGNLIREVAQVAGGGG-GGRPDMAQAGGKRPEKMAD 868

Query: 888 AIAGVASFLK 897
           A+      +K
Sbjct: 869 ALEKAKDLIK 878


>gi|307326782|ref|ZP_07605974.1| alanyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306887545|gb|EFN18539.1| alanyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 890

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/923 (35%), Positives = 500/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLRFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  VSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSSQEEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY++D+EA ++W+++ G+ A++I R+    N+WSM   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYEQDDEAERIWREVIGVPAERIQRLGMGPNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +   P        +IDTG+GL
Sbjct: 176 YDRGPEF-GEEGGPAVNDERYVEIWNLVFMQYERGAGEGKENFPILGELPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG+ Y     + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVRNMYETDTLRVVMDKATELTGVAYGAAHESDVSLRVVADHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   R+LG TEP++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRILGATEPVVGELVDVVLKTMGQQYPELLTDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  +LD  +  +      +L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEESAFLKTLKAGTNILDTAVTDTKAAGGSVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T+F GY    G
Sbjct: 415 EQGLS-VDEAGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADSSGLTEFTGYSHTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGVSSPAAGEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL DTG   +  G  +++ DVQ+   G+ VH  +V+ G +     +   ID   RR ++
Sbjct: 511 GQLADTGRITLDTGAVVEVRDVQQPVPGVSVHKGVVQVGEVTVGAGVHARIDITRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGGVLMDVEQKINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ ++A   GA A  G KY DRVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVSAEVMSMDEAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSQLTDLVKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + ++ +    + + +               +     ++  +     + +L+ ++  ++ 
Sbjct: 746 GKLKEAEKEIERFRAEKVLQAAAGLAQGAKDVRGTALVAAKVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      ++ L  ++  +  +V+            A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIPGDRPAVVALFTVAGGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N +   +AI  V   + +
Sbjct: 865 QGGGQNPDAVGEAIEAVERLVTE 887


>gi|57505123|ref|ZP_00371068.1| alanyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|305433060|ref|ZP_07402216.1| alanine--tRNA ligase [Campylobacter coli JV20]
 gi|57019098|gb|EAL55813.1| alanyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|304443761|gb|EFM36418.1| alanine--tRNA ligase [Campylobacter coli JV20]
          Length = 842

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/896 (38%), Positives = 504/896 (56%), Gaps = 60/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            +R+ +L FF+  GHE+ PSS L+P +D TL+FTN+GMVPFK+IF G+         T+ 
Sbjct: 2   DVRSEYLNFFKSKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFIGEVPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           LY+TV++ D+EAF+LW+K   +  ++I R    DNFW M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHESDDEAFELWQK--HIQKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEYF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NGEEDYMGGDGDRFLEIWNLVFMQYERSADGKLTPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++ G  Y   +  + RVI DH+RSS FL+A G     EGRGYVLRR
Sbjct: 239 FDSSLFMPIIDEIAKLCGKTYIYESGASFRVIADHIRSSVFLLAQGTSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  +P M +L+  +C  MG  Y  L + K  I+E +  E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGLKKPFMYNLVDVVCKLMGEHYTYLNEKKDFIKEQICLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    E+ +G+VAFKLYDT+G PLD+ QD+L  + L  +D   F + + 
Sbjct: 359 NGIEIFNKELKNT--KEVFSGEVAFKLYDTYGFPLDLTQDMLREKNL-VVDEAKFEELMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G       + +L EK+G   F+GY+                      
Sbjct: 416 EQKNRAKASWKGSGDKVASGDFKNLLEKFGENCFVGYEKTE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 + V A++ +  + V          V+ D TPFYA +GGQ+ DTG  IG    L 
Sbjct: 457 ----CQATVLALLDEDFKEVSSLKG--LGWVMLDNTPFYATSGGQIADTG-YIGTSEVLD 509

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                     +           ++    ++  ID   R Q + +HSATHLLHHAL  ILG
Sbjct: 510 TQKFFNLNLSLV-----KANEEIKLNDKIIAKIDTDKREQTARHHSATHLLHHALREILG 564

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SH+SQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  EDA  S
Sbjct: 565 SHISQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIISSSEAILENMPLEDAKKS 624

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RR
Sbjct: 625 GAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVRR 678

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A         +  +L   LK +  ++           +KL+    K K +L 
Sbjct: 679 IEAVVSRAALEFCKTFMNENLNLKEELKSNDLSLG---------VKKLKNEILKLKNELK 729

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             + S    +++N +   +  V+S ++K+++D  + K +   I+L+   K+ K ++   V
Sbjct: 730 NSNKSQLNSSNINGVQICVECVESGDIKTMIDEFKNKFEKAAILLIQT-KDDKITLAAGV 788

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                    A +L +  A++L GG GGGR   A +GG + +K D+A+      ++K
Sbjct: 789 KN---CPLKAGNLVKNIAQIL-GGNGGGRDDFATAGGKDISKIDEALKQALDLIQK 840


>gi|210622569|ref|ZP_03293251.1| hypothetical protein CLOHIR_01199 [Clostridium hiranonis DSM 13275]
 gi|210154152|gb|EEA85158.1| hypothetical protein CLOHIR_01199 [Clostridium hiranonis DSM 13275]
          Length = 911

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/908 (37%), Positives = 532/908 (58%), Gaps = 49/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR+ FLEFF+   H +  S  L+P ND +L+  N+GM P KN F+G E P    +
Sbjct: 37  MGLNEIRSKFLEFFKTKDHYVGASYPLVPNNDKSLLLINAGMAPLKNYFSGVEVPPKNRM 96

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D++NVG T RH TFFEMLGNFSFG YFK  ++   W+  TK  ++ 
Sbjct: 97  ATCQKCIRTG----DIENVGVTARHATFFEMLGNFSFGDYFKRESLAWGWEFATKWLNIP 152

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++++TVY++D+EAF +W K  G   ++I+R+  +DNFW +   GPCGPCSEI+FD+GE
Sbjct: 153 EEKIWVTVYEKDDEAFDIWSKEMGFPEERIVRLGKDDNFWEIG-LGPCGPCSEIYFDRGE 211

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +R++E WN VF QF ++       L   +IDTGMGLER+A ++Q 
Sbjct: 212 EYGCDSPDCKPGCDCDRFLEFWNHVFTQFSKEEDGSYSELENKNIDTGMGLERIACIMQG 271

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D    +++A  +V G++Y  +  N  + R+I DH+R+ SFLIADG+LP+NEGR
Sbjct: 272 VDNIFEVDTIHSVLEAVSKVAGVEYGKDKANDKSIRIITDHIRAVSFLIADGVLPSNEGR 331

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+LRR++RRA  + +LLG     +  L+  +    G AYPEL++ +  I++ ++ E+E+
Sbjct: 332 GYILRRLLRRAARHGKLLGIKGTFLNGLVDEVIKVSGDAYPELVEKEDYIKKVIKIEEEK 391

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D+G+ +L+     L K+   +L+G++AFKLYDT+G PLD+  +IL   GL+ ++ 
Sbjct: 392 FNETIDQGMEMLNSYKEELKKEGKTVLSGEIAFKLYDTYGFPLDLTVEILREEGLS-VNE 450

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +E+Q+ RAR     +   + ++   + KE+   ++F+GY  L G          
Sbjct: 451 EEFSEEMEKQKERARTARGNMDGESWKEDPLA-KEENVESEFVGYVELTG---------- 499

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V AIV+  EIVE A  G+ V VV D+T FY E GGQ GD G   
Sbjct: 500 -------------EGKVLAIVEDSEIVESASEGKDVVVVLDKTNFYPEGGGQAGDCGVLK 546

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D   + + + +K   G   H   V  G L+    L   +D +NR   S NH+ATHLLH 
Sbjct: 547 NDNCAVAVKNTKKGPAGSIKHFGTVVAGELKAGDVLTCEVDRENRMACSRNHTATHLLHK 606

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H +Q GS +T D LRFD TH + +T  ELK+IE+ VN+ I     VV   M+
Sbjct: 607 ALKEVLGDHANQAGSLVTADRLRFDFTHFEAVTKEELKTIEEKVNNAIFNAYDVVAETMD 666

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A A GAAAL G KY + VRVVS+     G +S  LCGG H+S+T +  +  I+SE  
Sbjct: 667 INAAKAKGAAALFGEKYGNEVRVVSM-----GDYSMELCGGAHISNTAQAGMFKIISEGG 721

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG+    ++  +DE +  + + +K  +  ++ RVE + EE + L+    
Sbjct: 722 VAAGVRRIEAVTGKAVYEYMNKKDELIAKVCATIKAKEDGLLHRVENVLEENKNLEKELH 781

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K Q++++       S  ++  V+ +++    +D   L+   D L+ K++SG+++L  +
Sbjct: 782 NLKTQISMQSADSALDSKVEVKGVSLVTNKYENMDMNTLRDTADNLRDKMESGVVVLANV 841

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K + ++  T+D++++  ++ ++ R  AK+ GG G GGRP+MAQ+G     K D+A+
Sbjct: 842 A-DGKVNFVVTATKDVIEKGVHSGNIVREVAKIAGGKG-GGRPNMAQAGATEPAKVDEAL 899

Query: 890 AGVASFLK 897
                 ++
Sbjct: 900 NYAKEVIE 907


>gi|86153544|ref|ZP_01071748.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843270|gb|EAQ60481.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 842

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/897 (38%), Positives = 505/897 (56%), Gaps = 62/897 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+F N+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFANAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V          V+ + TPFYA +GGQ  D          + 
Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503

Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             +V    +   ++ + V+ G   +    +   ID + R Q++ +HSATHLLHHAL  IL
Sbjct: 504 KREVLDTQKFFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREIL 563

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A  
Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKK 623

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+R
Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+  + A   +  Q E+L  +   LK +  +++  V+++  E   L+          
Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILNGVKKLKNEILSLKNELKN----S 731

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           +  +L    I  V      I   D+ ++K+++D  + K    +I+L+ + K++K ++   
Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           V +       A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 788 VKDAP---LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|86148968|ref|ZP_01067200.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597061|ref|ZP_01100297.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562159|ref|YP_002343938.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|20532267|sp|Q9PI05|SYA_CAMJE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|85840326|gb|EAQ57583.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190750|gb|EAQ94723.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359865|emb|CAL34653.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315927005|gb|EFV06360.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 842

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/897 (38%), Positives = 506/897 (56%), Gaps = 62/897 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V          V+ + TPFYA +GGQ  D          + 
Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503

Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             +V    +   ++ + ++ G   +    +   ID + R Q++ +HSATHLLHHAL  IL
Sbjct: 504 KREVLDTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREIL 563

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  
Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKK 623

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+R
Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+  + A   +  Q E+L  +   LK +  +++  ++++  E   L+          
Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILSGIKKLKNEILSLKNELKN----S 731

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           +  +L    I  V      I   D+ ++K+++D  + K    +I+L+ + K++K ++   
Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           V +D+     A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 788 V-KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|33864421|ref|NP_895981.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|41018180|sp|Q7V419|SYA_PROMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33641201|emb|CAE22331.1| Alanyl-tRNA synthetase:DHHA1 domain [Prochlorococcus marinus str.
           MIT 9313]
          Length = 892

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/913 (36%), Positives = 509/913 (55%), Gaps = 56/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IRT FL FF +  H+++PS+SL+P  DPT++ T +GM+PFK +F GQ +      T
Sbjct: 16  TGSEIRTAFLTFFAERAHQVIPSASLVPE-DPTVLLTIAGMLPFKPVFMGQAERPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELTTEVFGLDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA  +W+ + G++  +I+R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KNLVVSVFREDDEAETIWRDVVGVNPKRIMRMDEADNFWASGPTGPCGPCSEIYYDFKPD 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R++E +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   N
Sbjct: 191 L-GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ D+   LI+ +  + G+ Y+  +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDIIYPLIETAAGLAGLDYQKLDEKGKTSFKVIGDHCRAITHLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           ++RR++RR + + RL+G  +P +  +  A    M  AYP+L + + LI   L  E+ RF 
Sbjct: 310 IMRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  +L  VL  +   ++++G  AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 370 ETLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+++QR RA+A ++ +   T +     +  +  AT+F GY++L                
Sbjct: 427 QAMDQQRQRAKAAAVSIDL-TLQGAIEQMAAELEATRFQGYEVLEQPCC----------- 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537
                       V A+V  GE  E A +G  V++V D TPFY E+GGQ+GD G   G+  
Sbjct: 475 ------------VLALVVNGESAERASAGDSVQIVLDTTPFYGESGGQVGDHGVLSGEGS 522

Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +   D   +   +FVH   +ERG L     +   +D   RR+   NH+ATHLL  
Sbjct: 523 GGNGVIVTVDDVSRHRNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHLLQA 582

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++ S + Q GS +  D LRFD   ++ +T+ EL+ IE  +N  I ++  ++   M+
Sbjct: 583 ALKQVVDSGIGQAGSLVDFDRLRFDFHCARAVTAKELEQIEALINGWIMESHDLIVEEMS 642

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV+ESS
Sbjct: 643 IQEAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESS 697

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G    ++L  +DE +K L   LKV    +V RV  + EE +  Q    
Sbjct: 698 VAAGIRRIEAVAGPAVLAYLNERDEVVKKLLERLKVQPSEIVERVTSLQEELKSSQKALT 757

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L V   +        + +   +   +  V+   L++    L  ++  G  +++G 
Sbjct: 758 AARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQGLLDQLGDGAAVVLGG 817

Query: 831 ----SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               S E K  ++    + L+     A       AK  GGGG GGRP++AQ+GG +G   
Sbjct: 818 LPDPSDEGKVILVAAFGKQLIAQGQQAGKFIGSIAKRCGGGG-GGRPNLAQAGGRDGAAL 876

Query: 886 DQAIAGVASFLKK 898
           D A+      L++
Sbjct: 877 DGALEAAKVDLQQ 889


>gi|57238291|ref|YP_178628.1| alanyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|148925880|ref|ZP_01809567.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|73621968|sp|Q5HVQ7|SYA_CAMJR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57167095|gb|AAW35874.1| alanyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|145844866|gb|EDK21970.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|315057927|gb|ADT72256.1| Alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3]
          Length = 842

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/897 (38%), Positives = 506/897 (56%), Gaps = 62/897 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V          V+ + TPFYA +GGQ  D          + 
Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503

Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             +V    +   ++ + ++ G   +    +   ID + R Q++ +HSATHLLHHAL  IL
Sbjct: 504 KREVLDTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREIL 563

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  
Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKK 623

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+R
Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+  + A   +  Q E+L  +   LK +  +++  ++++  E   L+          
Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILSGIKKLKNEILSLKNELKN----S 731

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           +  +L    I  V      I   D+ ++K+++D  + K    +I+L+ + K++K ++   
Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           V +D+     A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 788 V-KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|198276957|ref|ZP_03209488.1| hypothetical protein BACPLE_03162 [Bacteroides plebeius DSM 17135]
 gi|198270482|gb|EDY94752.1| hypothetical protein BACPLE_03162 [Bacteroides plebeius DSM 17135]
          Length = 872

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/919 (35%), Positives = 485/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F++FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  A++ L     L
Sbjct: 61  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAYEYLVSILKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA   W +      D II    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYVTVFEGSPSEGISRDDEAASYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSAEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    ++G KY  +    V  RV+ DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKVIGDLSGKKYGDDEKTDVAMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   LG  +  M  L+P L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVPVLIENMGGAYPELKAQQA 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LL+  ++         ++G  AF LYDT G P D+ + 
Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLEKTMNETKAAGKTEISGVDAFTLYDTFGFPFDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   GL   D+  F   +++Q+ RAR       +      W +LKE  G T F+GYD  
Sbjct: 419 ILRENGLTA-DVKGFEAEMQKQKERARNA-----AAVETGDWVTLKE--GETTFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V  +TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSETPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   + I D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIDIIDTKKENNLPIHI---AKKLPEHLEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +++ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTPEQIREVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHVS+T
Sbjct: 620 RENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGS------SIEFCGGTHVSAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AG+RRIEA+TG +         + +  L +    +  ++   + +
Sbjct: 674 GKIGMVKIISESSVAAGVRRIEAVTGAKVEEMFDTVQDTINDLKALFNNAP-DLKAAISK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       K K       L     +I  V  +  ++  + +  +K++   L+
Sbjct: 733 YIEENAGLKKQMEEFMKEKEAAVKNKLIEGAKEINGVKVIKAVLP-MPADAVKNIAFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +    + +++G   E K  + + ++ED +    NA  L R +AK++ GG GGG+PH A 
Sbjct: 792 GQFTENLFVVIGSVFENKPLLTVTMSEDQVKAGLNAGQLVREAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 851 AGGKNPDGLNTAVDKVVEL 869


>gi|284925772|gb|ADC28124.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 842

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/897 (38%), Positives = 506/897 (56%), Gaps = 62/897 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V          V+ + TPFYA +GGQ  D          + 
Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DVGWVMLENTPFYATSGGQSAD-------SGFIA 503

Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             +V    +   ++ + ++ G   +    +   ID + R Q++ +HSATHLLHHAL  IL
Sbjct: 504 KREVLDTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREIL 563

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  
Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKK 623

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+R
Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+  + A   +  Q E+L  +   LK +  +++  ++++  E   L+          
Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILSGIKKLKNEILSLKNELKN----S 731

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           +  +L    I  V      I   D+ ++K+++D  + K    +I+L+ + K++K ++   
Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           V +D+     A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 788 V-KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|323464290|gb|ADX76443.1| alanyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 876

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/914 (38%), Positives = 514/914 (56%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKKLKASDIRQMYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREVPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  +
Sbjct: 61  PRIVNAQKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSER 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ LW  + GL+ D+IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMAMEPEKLYVTIHPEDTEAYDLWTNVVGLTEDRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQDDSAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPSKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q+   NY+ DLF  +I   E ++G KY  + +N V  +VI DH+R+ +F I+DG 
Sbjct: 234 MTSISQDVRTNYETDLFMPIIGQVEAISGKKYLVDKDNDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I   
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLEINEPFMYQLVEIVADIMEPYYPNVKEKGDFIARV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++      +E + G+ AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEEGLAILNDLIKQAKSSNETIAGEDAFKLYDTYGFPIELTEEITLNEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           LA ID+ SFN  +E QR RAR       S   +     LKE    ++F+GY+        
Sbjct: 414 LA-IDMDSFNDHMEAQRDRARKARQSSQSMQVQSEV--LKEINTVSKFLGYEAFETH--- 467

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  IV+ GE V  A +G+ +  + DQTPFYA +GGQ+ 
Sbjct: 468 --------------------AKITDIVRDGERVTMADAGETIHFILDQTPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G        +Q+T+V K   G  +H  +V+ G +R    +  TID Q R  +  NHSA
Sbjct: 508 DKGTVSNAQFEIQVTEVIKAPNGQHLHTGVVQFGEVREAAEVTATIDRQARTAIMKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  D LRFD +H  P+T+ E+K +E  VN+ I  ++PV
Sbjct: 568 THLLHAALKKVLGEHVNQAGSLVDSDRLRFDFSHIAPMTAKEMKQVEQMVNEEIWNSIPV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + MN EDA A GA AL G KY D VRVV+++       S  LCGGTHV +T EI L  
Sbjct: 628 EIQEMNIEDAKAKGAMALFGEKYGDIVRVVNMQP-----FSIELCGGTHVRNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYR 768
           I SES   AG+RRIEA+TGQ A  +L    ++   L   +K      V+ +VE++    +
Sbjct: 683 ITSESGTGAGVRRIEAVTGQNAFLYLEHYLDQFNVLKQQVKAKSDAQVIEKVEQLQYNEK 742

Query: 769 KLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L+        A  +L++         I D++ +   +   ++K +++ MD  + K+Q  
Sbjct: 743 TLKQTIEDKNKALNELKMGNIKDQVETINDMSVLITEVEVDNAKAMRTTMDDFKSKLQDS 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L       K S++  V + L DR  A D+ +  A V+ GG GGGRP MAQ GG    
Sbjct: 803 IIVLAS-DVGGKVSLIASVPKALTDRVKAGDIIKNMAPVV-GGKGGGRPDMAQGGGTEPG 860

Query: 884 KADQAIAGVASFLK 897
           K  +A+  + +++K
Sbjct: 861 KITEALQFIKNYIK 874


>gi|320011910|gb|ADW06760.1| alanyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 889

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/923 (36%), Positives = 501/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP    V
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW  LT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIEFAWAALTNSVEEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL+ITVY +D+EA ++W++  G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GFGLDPERLWITVYLDDDEAEQIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+     +   P        +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSQNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG++Y  +  + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADQGSDVSLRVVADHVRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RL+G T P++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVRDLVDVVVDTMGQQYPELITDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +LD  +  +     ++L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + ++ G T+F GY  + G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADRSGVTEFTGYASIEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESKIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  +Q+ DVQ+   G+ VH   V+ G +    S    ID   RR ++
Sbjct: 511 GQLADQGRIKLDSGAVIQVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDNTRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQKINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ +DA   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   LK     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELLKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMS----HIISEVDSKELKSVMDALQK 818
            + +  +    K + +  L           DV  ++     +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLAAAAGLVESAKDVRGVALVTGQVPDGTTADDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   ++ L   +  +  +V+            A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N +    A+A V   + +
Sbjct: 865 QGGGQNPDAIGDAVAAVERLVTE 887


>gi|328881150|emb|CCA54389.1| Alanyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 889

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/922 (36%), Positives = 502/922 (54%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           ++VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT      
Sbjct: 60  SSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTTPVEHG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY ED+EA ++W+ + G+ A++I R+   DN+WSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYQEDDEAEQIWRDVVGVPAERIQRLGKKDNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+     +   P        +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGSGKDDFPILGELPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + +I  +  +TG+ Y   +    + RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLQVVIDKATALTGVAYGKAHDSDVSLRVVADHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG + P++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAVRNMRLLGASGPVVGELVDTVINTMGEQYPELITDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +LD  +  +      +L+GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  GAT+F GY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRDRAKADAKAKKTGHADMTSYREIADSNGATEFTGYTNTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTVVGLLVNGVSSPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G   +  G  +++ DVQ+   G+ VH   V+ G +    +   TID + RR ++
Sbjct: 511 GQIADQGRIKLHSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGATAYATIDVRRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      +  A L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPNAVPGAVLTDVEQKINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M  ++A   GA A  G KY ++VRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELEVHAEVMPIDEAKRQGAIAEFGEKYGEKVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKISAML 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    K + +  ++       S   I  V  ++  +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLVDSAQDIRGVALVTGQVPDGTGADDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           +I  G   ++ L   +   K   +I   E   +R   A +L R +AK LGGGG GG+P +
Sbjct: 806 RISGGRPAVVALFTTAN-GKPLTVIATNEAARERGLKAGELVRTAAKTLGGGG-GGKPDV 863

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ GG N     +AIA V   +
Sbjct: 864 AQGGGQNPEAVGEAIAAVERLV 885


>gi|123965286|ref|YP_001010367.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|205830181|sp|A2BTZ9|SYA_PROM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123199652|gb|ABM71260.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 886

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/906 (35%), Positives = 499/906 (55%), Gaps = 52/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F++   H ++PSSSLIP +DPT+M T +GM+PFK +F G         +
Sbjct: 11  TGDEIRKAFLDFYESKSHLIIPSSSLIP-DDPTVMLTIAGMLPFKPVFLGLRNRPSPRAS 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK+ AIQ AW+L+T  + L  
Sbjct: 70  SSQKCLRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIQWAWELITDIYHLKP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + I+V+ ED E+ K+W+   G+  ++IIR+   DNFWS   TGPCGPCSE+++D    
Sbjct: 126 ENIIISVFHEDHESEKIWRDNIGIIPERIIRLDEKDNFWSSGATGPCGPCSELYYDFNPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ+ + +      L   +IDTGMGLERMA +LQ+KTN
Sbjct: 186 -KGLKNIDLEDGDRFIEFYNLVFMQYNRDSNGMLSDLKFKNIDTGMGLERMAQILQKKTN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +++ +  +  + Y  ++     + +++ DH R+   LI+DG++ +N GRGY
Sbjct: 245 NYETDLILPIVKEAALIANIDYFSSDDRTKISLKILGDHTRAIIHLISDGVVASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLL   +  +  L     + M + YP+L   K  I   +  E++RF 
Sbjct: 305 ILRRLLRRMIRHGRLLAIKDDFLSRLASIGISLMQNTYPDLKNNKERILREINIEEKRFL 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRG  LL+ ++     +++++G  AF+LYDT+G PL++ ++IL  +    +D+  F 
Sbjct: 365 ETLDRGEKLLNDLIRS--GEKLISGTKAFELYDTYGFPLELTKEILEEKN-INVDLEGFT 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +E Q+ RA+A S  +       I   + + +  T F GYD L                
Sbjct: 422 REMEAQKERAKAASQKIDLTLKGSIEREI-DLFDQTIFEGYDSLNS-------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      IVK I  +   VE+A+ GQ V+++ DQT FY E+GGQ+GDTG    +  
Sbjct: 467 ---------QGIVKGIFFESNSVEKAIQGQTVQIILDQTSFYGESGGQVGDTGTISRNDA 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I D   + + IF+H   V +G +     +   +D  NR +   NH+ATHLL  AL  
Sbjct: 518 EIDI-DKVIRKKNIFLHCGTVRKGEICRNQLVETRVDKFNRAKAESNHTATHLLQSALKL 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   VSQ GS +  + LRFD    +P++  ++  +E  VN  I++N P+  + M+++DA
Sbjct: 577 IIDKSVSQRGSLVGFNKLRFDFNSPQPLSKEQISQVESLVNSWISENHPIEVKNMDKDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + +GA A+ G KY D VRVV V        S  LCGGTHV +T E+    I+SE  I +G
Sbjct: 637 LKAGALAMFGEKYGDIVRVVDVPG-----VSMELCGGTHVQTTSEVGSFKIISEIGISSG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA++GQ    +   +DE +  L+  LK     +  R++ +  E         + K 
Sbjct: 692 IRRIEALSGQLVLDYFKERDETVNKLSDLLKARPSQLFERIDSLQTELVNKNKEIQRMKD 751

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           ++          S  KI   + + + I  +D   L+S    L  K+    ++++G   + 
Sbjct: 752 EIAYFKYSSLSSSAKKIGSFSLIINQIDGLDGSSLQSAALDLTSKLGDKSVVILGGIPDT 811

Query: 834 --KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             KK   ++   +DL+ R  +A  L    +++  GG GGG+P+ AQ+G  + +K + A+ 
Sbjct: 812 EKKKLLFVVSFGDDLVRRGMHAGKLINEISRICSGG-GGGKPNFAQAGAKDIDKLNDALE 870

Query: 891 GVASFL 896
                L
Sbjct: 871 YARKDL 876


>gi|283954216|ref|ZP_06371740.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794234|gb|EFC32979.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
          Length = 842

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/897 (38%), Positives = 505/897 (56%), Gaps = 62/897 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IF G+         T+ 
Sbjct: 2   DIRKAYLDFFALKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFIGEVPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSQDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++ G  Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIIDEIAKLCGKAYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +  E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQICLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNA--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKTE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V          V+ + TPFYA +GGQ  D          + 
Sbjct: 457 ----CESKILALLNEDLKEVFSLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503

Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             +V    +   ++ + ++ G   +    +   ID + R Q++ +HSATHLLHHAL  IL
Sbjct: 504 KREVLDTQKFFNLNLSFIKAGEELKVGDIIHAKIDTEKREQIARHHSATHLLHHALREIL 563

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A  
Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKK 623

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YI+ ES + AGIR
Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIIKESGVSAGIR 677

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+  + A   +  Q E+L  + + LK +  +++  V+++  E   L+          
Sbjct: 678 RIEAVVSKAALEFVKNQLEELFKIKNELKNN--DILSGVKKLKNEILNLKNELKN----S 731

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           +  +L    I  V      +   D+ ++K+++D  + K    +I+L+ I K++K ++   
Sbjct: 732 SKTELDSKNIKGVEICVKRV---DNGDIKAMIDDFKNKFNKAVILLIQI-KDEKITLAAG 787

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           V +       A  L +  A++L GG GGGR   A +GG + +K D+A+      ++K
Sbjct: 788 VKDAP---LKAGVLVKEVAQIL-GGNGGGRDDFATAGGKDLSKIDEALKQSLETIEK 840


>gi|255321362|ref|ZP_05362522.1| alanyl-tRNA synthetase [Campylobacter showae RM3277]
 gi|255301515|gb|EET80772.1| alanyl-tRNA synthetase [Campylobacter showae RM3277]
          Length = 849

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/895 (38%), Positives = 510/895 (56%), Gaps = 55/895 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64
            IR  +L FF   GHE++PS+ L+P ND TL+FTN+GMVPFK+IFTG+       + T+ 
Sbjct: 2   DIREAYLNFFASKGHEIIPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPPIRTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAIAYAWEFVTQVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW     ++ ++I R   +DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHESDDEAFALW--EQHIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQGGEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+ +  +   LPK SIDTGMGLER+  +++ K +N
Sbjct: 179 NTPEDYMGGDGDRFLEIWNLVFMQYERSSDGKLTPLPKPSIDTGMGLERVTAIMEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  LF  LI+   ++ G  Y   +  ++RVI DH+RS +FL+A G     EGRGYVLRR
Sbjct: 239 YDSSLFMPLIEEVAKLCGKPYAYESGASYRVISDHIRSVTFLLAQGTTFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  +C  MG  Y  L + K  ++E +R E+ERF  T+ 
Sbjct: 299 ILRRAIRHGYLLGIREPFMYRLVDKVCELMGGHYAYLNEKKAAVKEQIRLEEERFLATIA 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            GL L +  L+     +I +G  AFKLYDT G PLD+  D+L  +GL  +D   F++ + 
Sbjct: 359 SGLELFESELART--KDIFSGKAAFKLYDTFGFPLDLTADMLREKGLK-VDEAKFDELMS 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  + +  + +L EK+G  +F GY+ L                    
Sbjct: 416 EQKARAKAAWKGSGDKSAKGDFKALLEKFGENKFSGYEELER------------------ 457

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                +S V A++ +  +  +   +G++   +FD TPFYA++GGQ GD+G   G    L 
Sbjct: 458 -----TSRVLALLDEDFKETQILKAGEQGWAMFDVTPFYAQSGGQAGDSGEIEGVADVLD 512

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                            ++ G        V     + R +++ +HSATHLLH AL ++LG
Sbjct: 513 TQKFFGLNLSNVAVKKELKIGDT------VKLKVSEQRAEIARHHSATHLLHAALRSVLG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           +H++Q GS +    LRFD +H K +T+ EL  IE+ VN  IA+++   T IM+ E+A  S
Sbjct: 567 THIAQAGSSVEASRLRFDFSHPKAVTAEELTKIENFVNSAIAESIAAKTEIMDIEEAKNS 626

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D+VRV+S      G  S  LCGGTHV++  +I   +I  E  + AG+RR
Sbjct: 627 GAIALFGEKYADKVRVLSF-----GEVSKELCGGTHVANLSQIGAFFITKEGGVSAGVRR 681

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A +       +++ L + LK      +  V+++  E + L+    K K   +
Sbjct: 682 IEAVCSKAALNLAKAWRGEIEELKTELKS--AEPMNAVKKLKAEIKSLK---DKTKQAKD 736

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
              L+   + +      +I   D  ++K+ +D  + + +   I+LV +++E K ++   V
Sbjct: 737 AHALAVVNVNETKLCVAVI---DGGDIKATIDEFKNENEKAAILLVQVNEEGKIAMAAGV 793

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                    A +  + +A++L GG GGG+   A +GG N    + AI     F K
Sbjct: 794 KNAP---LKAGEWVKFTAQIL-GGNGGGKDDFATAGGKNVLAIEDAIRQALEFAK 844


>gi|205355365|ref|ZP_03222136.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346599|gb|EDZ33231.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 842

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/897 (38%), Positives = 506/897 (56%), Gaps = 62/897 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V          V+ + TPFYA +GGQ  D          + 
Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DVGWVMLENTPFYATSGGQSAD-------SGFIA 503

Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             +V    +   ++ + ++ G   +    +   ID + R Q++ +HSATHLLHHAL  IL
Sbjct: 504 KREVLDTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREIL 563

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  
Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKK 623

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+R
Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+  + A   +  Q E+L  +   LK +  +++  ++++  E   L+          
Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILSGIKKLKNEILSLKNELKN----S 731

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           +  +L    I  V      I   D+ ++K+++D  + K    +I+L+ + K++K ++   
Sbjct: 732 SKTELDSKSIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           V +D+     A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 788 V-KDVP--LKAGTLVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|254527157|ref|ZP_05139209.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221538581|gb|EEE41034.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 886

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/908 (34%), Positives = 508/908 (55%), Gaps = 52/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+ +  H+++PS+SL+P +DPT+M T +GM+PFK +F G ++   +  T
Sbjct: 11  TGDEIRNAFLKFYSEKFHKIIPSASLVP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+TK + L  
Sbjct: 70  SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTKIYKLSS 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V+ EDEE+ K+W++  G++ D+I+++   DNFWS  +TGPCGPCSE+++D    
Sbjct: 126 DNIIVSVFHEDEESEKIWREEIGINPDRIVKLGEKDNFWSSGKTGPCGPCSELYYDFNPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ  + +  +   L   +IDTGMGLERMA +LQ+K+N
Sbjct: 186 -KGLKYVDLEDGDRFIEFYNLVFMQHNRDSNGKLTDLKFKNIDTGMGLERMAQILQKKSN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + +++ + Y  ++     + +++ DH R+   LI+DG+  +N GRGY
Sbjct: 245 NYETDLIFPIIKKASEISSLDYFSSDERTKISFKILGDHTRAVIHLISDGVSASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG T+  +  +       M + YP+L     LI   ++ E+ RF 
Sbjct: 305 ILRRLLRRMVRHGRLLGITKEFLSDIASVGIKLMENYYPDLKNNNELILSEIKIEEVRFR 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LLD ++S     +++ G  AF+LYDT+G PL++ ++I     +  +DI  F 
Sbjct: 365 ETLERGEKLLDEIISS--GQKLITGFKAFELYDTYGFPLELTEEIAGENNIK-VDIEGFQ 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + ++ Q+ RA+A S  +       +   + + +  T F G D L                
Sbjct: 422 REMDAQKERAKAASSKIDLTLEGSLEREI-DSFNKTIFNGEDCLDS-------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + ++ I      V++A  GQ+V++V DQT FY E+GGQ+GD G       
Sbjct: 467 ---------EAKIQGIFLDSNFVKKASEGQRVQIVLDQTSFYGESGGQVGDIGIICSTDA 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D   + + +F+H  IV+ GIL    ++   ++   R + S NH+ATHLL  AL  
Sbjct: 518 EVLV-DKVVRKKNVFLHDGIVKNGILTVGQTIKTIVNPAKRARASANHTATHLLQSALKE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++  +VSQ GS +  + LRFD   SKP++  +++ +E  VN  I QN P+V + M + +A
Sbjct: 577 VVNKNVSQKGSLVAFNKLRFDFNASKPVSEDQIRKVESLVNSWIIQNHPLVIKNMPKREA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A+ G KY D VRVV V        S  LCGGTHV +T E+    I+SE  I AG
Sbjct: 637 LEKGALAMFGEKYGDEVRVVDVPG-----VSMELCGGTHVKNTSELGCFKIISEEGISAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E         K K 
Sbjct: 692 VRRIEALSGQSAFDYFSERNFLVNKLSDLLKANPSQLFDRVNNLQSELINKNKEIQKMKD 751

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISK- 832
           ++          S   +   + + + I  +D   L+S    L  ++ +  +++L GI   
Sbjct: 752 EIAYFKYSSLHSSAEIVNSFSILVNQIDGLDGDSLQSAALNLTSQLGNKSLVILAGIPNP 811

Query: 833 -EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             +K   ++   ++++    +A  L    A++  GG GGG+P+ AQ+G  + +K D A+ 
Sbjct: 812 ENRKLLFVVSFGDEVVKIGLHAGKLINEIARICAGG-GGGKPNFAQAGARDIDKLDFALD 870

Query: 891 GVASFLKK 898
              + L+K
Sbjct: 871 YAKNHLQK 878


>gi|121612666|ref|YP_001000209.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005165|ref|ZP_02270923.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|205830017|sp|A1VYL8|SYA_CAMJJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|87250291|gb|EAQ73249.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 842

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/897 (38%), Positives = 504/897 (56%), Gaps = 62/897 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+F N+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFANAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V          V+ + TPFYA +GGQ  D          + 
Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503

Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             +V    +   ++ + V+ G   +    +   ID + R Q++ +HSATHLLHHAL  IL
Sbjct: 504 KREVLDTQKFFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREIL 563

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +  + LRFD TH K +   EL+SIE  VN++I  +   +   M  E+A  
Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNEMIINSSEAILENMPLEEAKK 623

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+R
Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+  + A   +  Q E+L  +   LK +  +++  V+++  E   L+          
Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILNGVKKLKNEILSLKNELKN----S 731

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           +  +L    I  V      I   D+ ++K+++D  + K    +I+L+ + K++K ++   
Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           V +       A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 788 VKDAP---LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|189499310|ref|YP_001958780.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|189494751|gb|ACE03299.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 886

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/922 (36%), Positives = 504/922 (54%), Gaps = 67/922 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR +FL++F+K  H ++ S+ +IP  DPTL+FTN+GM  FK++F  +    Y   
Sbjct: 1   MKSSDIRQSFLDYFEKKEHTIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLDKGSRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIAWAWELLTEVWSLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +D+E+ ++WK  + +  D I++    DNFW M ETGPCGPCSEI  D  +
Sbjct: 121 KERLYATVYQDDDESLEIWKTATDIDPDHIMKFGDKDNFWEMGETGPCGPCSEIHIDLTD 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
            + G     + +  R IE+WNLVF+Q+ ++  +    LPK  +DTGMG ER+  VLQ K 
Sbjct: 181 DLSG-RELVNADDHRVIELWNLVFIQYNRKADRSLEPLPKKHVDTGMGFERITAVLQSKG 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F  L  A    TG+ Y    +G   +  RVI DH R+ +F I DG +P NEGR
Sbjct: 240 SNYDTDIFAPLFDAITAHTGVAYTATLDGERDMAMRVIADHARTLTFAITDGAVPGNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ YAR L   +P++  L+  +   MG+ +PEL + +  +E+ ++SE+E 
Sbjct: 300 GYVLRRILRRAVRYARKLDCNQPVLYRLVGVIADTMGAVFPELKKQQATVEKIVKSEEES 359

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL RG+ +   + +     K++ ++G+ AF+LYDT+G PLD+ + +    GL G+D 
Sbjct: 360 FLVTLGRGIEIFGEIAAALKASKEKSISGEDAFRLYDTYGFPLDLTRLMASEEGL-GVDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++EQ+ RAR         T ++  +   E+ G T F+GY+ L     +   R  
Sbjct: 419 KGFGACMKEQKERARKDRKQKQQITGDEGQWQWFEQKGPTVFLGYETLETEAQIIGVR-- 476

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                         ++G ++++V DQTPFYAE+GGQ GD G   
Sbjct: 477 ------------------------------IAGSQMQLVLDQTPFYAESGGQTGDRGRIE 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVER----GILRTEM-------SLVLTIDYQNRRQLS 584
           G+     + D +K  + I      V      G +  E         +   +D + R    
Sbjct: 507 GENYIFDVIDTRKDGDVIVHVAGTVYDRATGGEVTPESIAFSQAVQVQAQVDKETREATE 566

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS + PD LRFD +H + +++ EL+++E  VN+ I 
Sbjct: 567 RNHTATHLLHAALRKVLGEHVQQKGSLVGPDRLRFDFSHFEKVSAGELEAVEAEVNERIR 626

Query: 645 QNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +   +V       +A    GA A  G KY DRVRVV V        S  LCGGTHVS+ G
Sbjct: 627 EAGALVKHADIPYEAALEKGALAFFGDKYADRVRVVEVPG-----VSMELCGGTHVSNVG 681

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762
           +I L  I+SESSI +GIRRIEA++G+ A   L G  ++L+ +   L+      V  RV+E
Sbjct: 682 QIGLFKIMSESSIASGIRRIEAMSGKAAEEVLWGDYQELQQVRQLLRTGGEESVAARVQE 741

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE + L       KL L ++           +           +  +  L+S+   L+
Sbjct: 742 LLEERKILDKKLQDMKLSLLLDKAIGELEQADTVNGCRIFVMKYDDSGADTLRSLGQFLR 801

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +KI  G+ +L G  ++ K +++    ++ +     NA +L + +A ++ GGG GG+P  A
Sbjct: 802 EKIGRGVGLLAG-EEQGKVTLVGFAGDEAIRECGLNAGELVKKAAAMVQGGG-GGKPGFA 859

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
            +GG N     +++      ++
Sbjct: 860 TAGGKNPAGIPESMKVFEETVR 881


>gi|260654150|ref|ZP_05859640.1| alanine--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260631135|gb|EEX49329.1| alanine--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 879

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/905 (39%), Positives = 512/905 (56%), Gaps = 45/905 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  F++F+   G    PS SL+P +DP+L+FT +GMVPFK  + G E+P  ++ 
Sbjct: 1   MSGKDIRRKFIDFWVSKGAHHFPSFSLVP-DDPSLLFTIAGMVPFKKYYLGLEEPPVKSA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR     ND++NVG T RHHTFFEMLGNFS+GGYFK  ++   W+ LT+   LD
Sbjct: 60  VTSQKCVRT----NDIENVGHTARHHTFFEMLGNFSWGGYFKHESLTWGWEFLTQVIGLD 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+Y T+Y +DEEA+K+W    GL+ D I+R    +NFW M   GPCGP SEI +DQGE
Sbjct: 116 GSRMYATIYKDDEEAYKVWHDEIGLADDHILRCGEEENFWFMGPQGPCGPDSEILYDQGE 175

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G       + +RY+EIWN VF QF++Q       LP+ +IDTGMGLER+ +++Q  
Sbjct: 176 KFSCGPNCHPGCDCDRYLEIWNHVFTQFDRQEDGSMLPLPRKNIDTGMGLERLTSLVQGV 235

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           TN+++ DLF  LI+    ++G+ Y  +    +  +VI DH+RS  F++ADGILP+NEG G
Sbjct: 236 TNDFETDLFLPLIRKVTDLSGVAYGSSAAGDLALKVISDHIRSVCFMLADGILPSNEGPG 295

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA+ Y RL+G   P +  LLP + +EM   Y EL +++L I + +  E+ RF
Sbjct: 296 YVLRRLLRRAVRYGRLIGIDRPFLNDLLPVVVSEMSDPYAELAESQLTIRQIIDVEENRF 355

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           G+TL +G  LL+  +    K   + L GDVAF+LYDT+G PL++  +I   + L  +D  
Sbjct: 356 GRTLSQGCALLNDEIDRAVKAGSKTLAGDVAFQLYDTYGFPLELTTEICSEKNLT-VDES 414

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F   + +Q+ RAR  S  +G   T   + +L+ + G   F+GYD L             
Sbjct: 415 EFKAQMTQQKDRARKASKQVGVVITGDAFTALQNRLGTVPFVGYDALSS----------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       SS +  +V  G +V+   +GQ  + V   TPFYAE GGQ+GDTG    
Sbjct: 464 ------------SSQIVGLVCDGALVDRLETGQSGQAVVTPTPFYAERGGQVGDTGTLTA 511

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                 +T    +A  + V    V  G L T+  +  ++D + R  ++ NH+ATHLLH A
Sbjct: 512 VRTEAAVTGCFYRAGDLSVLDITVNSGALETDQFVTASVDKERRAAITRNHTATHLLHQA 571

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV QNGS ++P+ LRFD TH + +T  +++ +E   N  +  N+PV T  MN 
Sbjct: 572 LIDVLGGHVRQNGSLVSPEFLRFDYTHFEAMTPEQIRQVETLANRKVLANMPVDTEQMNL 631

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            DA A GA AL   KY D VRVVS      G  S  LCGGTHV +TGEI L+ IVSE SI
Sbjct: 632 ADAKAKGAKALFEEKYGDVVRVVS-----AGDFSCELCGGTHVGATGEIGLVKIVSEESI 686

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA- 775
            +G+RR+ A+TG  +          L++LA    V    VV +V  + +E ++L    A 
Sbjct: 687 GSGVRRLTAVTGMNSYDMFDKASSALRTLAQKFNVRPEGVVEQVVALEQENKELARQLAD 746

Query: 776 KRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K K  L       ++  ++      S  I  V    ++   D ++ K    +++ +G ++
Sbjct: 747 KVKSDLAGRLDGGIARTELDGCCLCSARIDGVPMDMMREAGDRVKDKEPRSVVVFMGQTE 806

Query: 833 EKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K  +L +V  E L   ++A  + +  A ++GGGG GGRP MAQ+GG +  K DQA+A 
Sbjct: 807 EGKVQILCMVGAEALKAGYHAGKIVKALAGLVGGGG-GGRPDMAQAGGRDCAKIDQALAD 865

Query: 892 VASFL 896
               +
Sbjct: 866 AEGIV 870


>gi|223039439|ref|ZP_03609727.1| alanyl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222879235|gb|EEF14328.1| alanyl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 849

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/895 (38%), Positives = 513/895 (57%), Gaps = 55/895 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64
            IR  +L FF   GHE++PS+ L+P ND TL+FTN+GMVPFK+IFTG+       + T+ 
Sbjct: 2   DIREAYLNFFASKGHEIIPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPPIRTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKRDAIAYAWEFVTQALKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW     ++ ++I R   +DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHERDDEAFALW--EQHIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQGGEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+ +  +   LPK SIDTGMGLER+  +++ K +N
Sbjct: 179 NTPEDYMGGDGDRFLEIWNLVFMQYERSSDGKLTPLPKPSIDTGMGLERVTAIMEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  LF  LI+    + G  Y   +  ++RVI DH+RS +FL+A G     EGRGYVLRR
Sbjct: 239 YDSSLFMPLIEEVAALCGKPYAYESGASYRVISDHIRSVTFLLAQGTTFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  +C  MG  Y  L + K  ++E ++ E+ERF  T+ 
Sbjct: 299 ILRRAIRHGYLLGIKEPFMYRLVDKVCELMGGHYAYLNEKKAAVKEQIKLEEERFLATIA 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            GL L +  L+     +I +G+ AFKLYDT G PLD+  D+L  +GL  +D   F++ + 
Sbjct: 359 SGLELFESELTRT--KDIFSGEAAFKLYDTFGFPLDLTADMLREKGLK-VDEAKFDELMS 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  + +  + +L EK+G  +F GY+ L                    
Sbjct: 416 EQKARAKAAWKGSGDKSAKGDFKALLEKFGENEFSGYEELER------------------ 457

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                +S V A++ +  +  +   +G++   +FD TPFYA++GGQ GD+G   G    L 
Sbjct: 458 -----TSKVLALLDEDFKETQILKAGEQGWAMFDVTPFYAQSGGQAGDSGEVAGAADVLD 512

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                  +         ++ G        V     + R +++ +HSATHLLH AL ++LG
Sbjct: 513 TQKFFGLSLSNVTVKKELKIGDT------VKLKVSEQRAEIARHHSATHLLHSALRSVLG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           +H++Q GS +    LRFD +H K +T+ EL  IE+ VN  I++N+   T IM+ EDA  S
Sbjct: 567 THIAQAGSSVEASRLRFDFSHPKAVTAEELTKIENFVNAAISENIEAKTEIMDIEDAKNS 626

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D+VRV+S      G  S  LCGGTHVS+  +I   +I  E  + AG+RR
Sbjct: 627 GAIALFGEKYADKVRVLSF-----GEVSKELCGGTHVSNLSQIGAFFITKEGGVSAGVRR 681

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A +       +++ L + LK +    +G V+++  E + L+    K K   N
Sbjct: 682 IEAVCSKAALNLAKAWRSEIEELKTELKST--EPIGAVKKLKAEIKSLK---DKAKQAKN 736

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
              L+C  + +      ++   D  ++K+ +D  + + +   I+LV +++E K ++   V
Sbjct: 737 AHALACVNVNETKLCVAVL---DGGDIKATIDEFKNENEKAAILLVQVNEEGKIALAAGV 793

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                    A +  + +A++L GG GGG+   A +GG N    + A+     F K
Sbjct: 794 KNAA---LKAGEWVKFTAQIL-GGNGGGKDDFATAGGKNVLAIEDAMRQAFEFAK 844


>gi|284032274|ref|YP_003382205.1| alanyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283811567|gb|ADB33406.1| alanyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 889

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/922 (35%), Positives = 502/922 (54%), Gaps = 62/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL++F+  GH ++PS+ L P  DP L+F  +GM  F   F GQ+ P Y   
Sbjct: 1   METSEIRRRFLQYFEDRGHTVVPSAPL-PSPDPNLLFNVAGMAQFVPYFVGQQTPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFK++AI+ AWDL+TK     
Sbjct: 60  TSVQKCVRTL----DIEEVGKTTRHGTFFQMNGNFSFGDYFKDQAIEYAWDLVTKPQSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D+  LY +VY ED+EA  +WK+++GL  D+I+R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGFDESVLYASVYYEDDEAIDIWKRVAGLPDDRIVRLGMKDNFWSMGVPGPCGPCSEIL 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G          + +  RY+E WNLVFMQ  +     +        LP  +IDTG+GL
Sbjct: 176 IDRGPEFGADRDWEAGD--RYLEFWNLVFMQNVRGEGGGKEGYPILGELPNKNIDTGLGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I+ + +++G KY  +  + V  RV+ DH+RS+  LI D
Sbjct: 234 ERVAYLLQGVDNMYEIDEIFPVIERAAELSGRKYGVDHVDDVRFRVVADHVRSALMLIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NE  GYVLRR++RRA+   RLLGY +P ++ LLP    +M  +YPEL      I 
Sbjct: 294 GVTPGNEQGGYVLRRLLRRAVRSMRLLGYEDPSLVELLPTSLEQMKKSYPELETDFGRIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E++ F +TL  G  + D  +          L G  AF+L+DT+G P+D+  ++  
Sbjct: 354 QIAYAEEDAFRRTLTAGTSIFDVAVKNVKAEGGARLAGAQAFQLHDTYGFPIDLTVEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +GL  +D   F   + EQR RA+A +     G  +   +    + G T+F GY  L   
Sbjct: 414 EQGL-QVDTEGFRSLMTEQRERAKADARAKKLGHADTSGYRELREKGITEFTGYTELATD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S ++ ++++G + + A  G+ VEVV ++TPFYAE+GG
Sbjct: 473 -----------------------SQIRGVLREGAVAQAAEPGETVEVVLEKTPFYAESGG 509

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G  + DG++LQ+ DVQ+  +G+ VH   V  G+++  + +   +D++ R +    
Sbjct: 510 QIADEGLIVADGVKLQVLDVQRPVKGLIVHKVKVLEGVVQPGLDVHAQVDHEWRVEACQA 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG    Q+GS   P  LR D   S  +  A    IE+  N  + Q+
Sbjct: 570 HSGTHVVHAALRQVLGPTALQSGSYNKPGYLRLDFAWSSALDQATRSEIEEVANLAVRQD 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV  + M   +A   GA AL G  Y+++VRVV +    GG  S  LCGGTHV  + ++ 
Sbjct: 630 LPVSAQYMTLPEAREWGALALFGETYDEQVRVVEI----GGPWSRELCGGTHVKHSSQVG 685

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            L + SESS+ AG+RR+EA  G  A   L  +   ++ L+  LK     +  +V ++ E 
Sbjct: 686 ALTVTSESSVGAGVRRLEAFVGLEALRFLGRERSLVRLLSENLKTRPEELPAKVADLAER 745

Query: 767 YRKLQLIHAKRKLQ---LNVEDLSC--HKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            R  +    K +         +L+     +  V ++ H     V+  +L+ +   ++ ++
Sbjct: 746 LRAAEKELEKVRASQVMAAAGELAASPKDVFGVAYVGHRAPDGVNGGDLRKLALDVRGRM 805

Query: 821 ---QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
              +  ++ LVG+  + K +V++ + +   + R  A DL R++A+ L GG GGG+  +AQ
Sbjct: 806 PADKPAVVALVGV-NDGKPAVVVALNDTAREWRLKAGDLVRVAAEQL-GGRGGGKDDVAQ 863

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            GG +   AD+A++ V   + +
Sbjct: 864 GGGTDPAGADKALSAVEHAVGQ 885


>gi|313887310|ref|ZP_07821001.1| alanine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923229|gb|EFR34047.1| alanine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 871

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/917 (36%), Positives = 493/917 (53%), Gaps = 68/917 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+++GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G ++P Y+  
Sbjct: 1   MTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI+ AW  LT+   L 
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAIKYAWTFLTERLQLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV+          D+EA   W + +  + D+II  +  DNFW M +TGPCGPCS
Sbjct: 121 KDRLYVTVFGGSPEEGLSRDDEAASYWLQYT--TEDRIIDGSRKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +++    IEIWNLVFMQ++++       LP   IDTGMG
Sbjct: 179 EIHIDLRSEEERQAVCGRDLVNKDHPLVIEIWNLVFMQYDRKVDGHLEPLPHKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   +Q K +NYD DLF  LI+A E ++G +Y  N    +  RV+ DH+R+ +F IA
Sbjct: 239 FERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIAFAIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   EP++  LLP L   MG AYPE++  + L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGEAYPEIVAQREL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDIL 405
           I   ++ E+E F +TL +GL LL+  +  L +D ++L+G  AF LYDT+G PLD+ + IL
Sbjct: 359 IASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLTELIL 418

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +D ++F++ ++EQ+           +      W  L E+   + F+GY+ L+ 
Sbjct: 419 SERGMT-LDQVAFDKLMQEQK-----SRARQAAAIDAADWEVLDEETTESTFVGYETLQI 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +   RKV  +K                                +VV  +TPFYAE G
Sbjct: 473 ETHILRYRKVADKKRSY----------------------------YQVVLAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G  I            K+   + VH           +   +  +  + R     
Sbjct: 505 GQIGDKGVLIAQDGTEYPIIDTKRENNLPVHIL--STLPANPKQPFIARVGDELRHLTEA 562

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHL+HHAL  +LG+HV Q GS ++ D LRFD +H K +T  E+  +E  VN  I  
Sbjct: 563 NHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVNAEIRA 622

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + P    R +    A   GA AL G KY D VRV+          S  LCGGTHV+STG+
Sbjct: 623 DRPRDEQRNVPIAKAKEMGAMALFGEKYGDEVRVIKYGD------SVELCGGTHVASTGQ 676

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I+SE SI AGIRRIEA+TG +A  ++   +E+L+     L      +   ++ + 
Sbjct: 677 IGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPL-KALDRLI 735

Query: 765 ----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
               E+ + ++     +  Q+ ++ L+         +  +   + S   K V   +++++
Sbjct: 736 AEGAEQRKAIEQYTKAQAEQIALQALADQTKHGETTIVTVNKPMSSDVAKDVAGTIRERL 795

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           Q   + L+G ++E K ++ ++++ DL+D+  NA  L +  A ++ GG GGG+PH A +GG
Sbjct: 796 QGSYLALIGAAEEGKCTLTVILSPDLVDKGLNASKLIKEVASLIKGG-GGGQPHFATAGG 854

Query: 880 PNGNKADQAIAGVASFL 896
            N      AI  + S +
Sbjct: 855 RNPEGLQAAIDHIVSLI 871


>gi|157164208|ref|YP_001467070.1| alanyl-tRNA synthetase [Campylobacter concisus 13826]
 gi|205830011|sp|A7ZE62|SYA_CAMC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|112800400|gb|EAT97744.1| alanyl-tRNA synthetase [Campylobacter concisus 13826]
          Length = 852

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/901 (38%), Positives = 511/901 (56%), Gaps = 56/901 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M N+  IR  +L+FF+  GHE++ S+ L+P ND TL+FTN+GMVPFK+IFTG+       
Sbjct: 1   MQNL-DIRKAYLDFFKSKGHEVVASAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPP 58

Query: 61  V-TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           + T+ Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   
Sbjct: 59  IRTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKEAIAYAWEFVTEVLK 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + +LY+TV++ D EAF++W   + ++ ++I R   +DNFW M +TGPCGPCSEIF+DQ
Sbjct: 119 LPKDKLYVTVHESDYEAFEIWS--THIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQ 176

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G E           +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  +LQ
Sbjct: 177 GAEHFNTPEDYMGGDGDRFLEIWNLVFMQYERSADGKLSPLPKPSIDTGMGLERVTAILQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K +NYD  LF  LI    ++ G  Y   +  ++RVI DH+RS +FL+A G     EGRG
Sbjct: 237 GKFSNYDSTLFMPLISEVAKLCGKPYVYESGASYRVISDHIRSVTFLLAQGTTFDKEGRG 296

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +  LLG  EP M  L+  +C  MG  Y  L   K  ++E ++ E+ERF
Sbjct: 297 YVLRRILRRAIRHGYLLGIKEPFMYKLVDKVCELMGGHYTYLNDKKAAVKEQIKLEEERF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             T+  GL L +  L +    EI +G+ AFKLYDT G PLD+  D+L  +GL  +D   F
Sbjct: 357 LATIASGLELFESELKNT--KEIFSGEAAFKLYDTFGFPLDLTADMLREKGLK-VDEARF 413

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++ + EQ++RA+A   G G  + +  +  L EK+G  +FIGY+ L+              
Sbjct: 414 DELMSEQKARAKAAWKGSGDKSAKGDFKELLEKFGENKFIGYEELKS------------- 460

Query: 479 KPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      S + A++ +  + ++   +G++  V+FD TPFYA++GGQ GD G  +G 
Sbjct: 461 ----------KSKILALLDEEFKNIDGLDAGKEGWVMFDVTPFYAQSGGQCGDNGKIVGK 510

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              L           +    A ++ G        V      +R + + +HSATHLLH AL
Sbjct: 511 ADVLDTEKFHGLNLSLVKTSAALKVGDE------VELEVGSDRAETARHHSATHLLHAAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++G+H++Q GS +  D LRFD +H K ++  E+  +E+ VN+ I       T++M  E
Sbjct: 565 RAVVGTHIAQAGSNVEADRLRFDFSHPKALSGEEISKVENLVNEWIVNGANAKTQVMELE 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  SGA AL   KY D+VRVVS      G  S  LCGGTHV +  EI   +I  ES + 
Sbjct: 625 EAKKSGAIALFNEKYADKVRVVSF-----GDVSKELCGGTHVKNIDEIGSFFITKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+  + A +       +L+ L     +     +  V+++  E + L+    K 
Sbjct: 680 AGVRRIEAVCSRAALNLARSFRAELEELKEE--LKSAEPLNAVKKLKGEIKGLK---DKL 734

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           K   N   L+   + D       ++ +DS ++K+++D  + + +   I+L+ + +E K S
Sbjct: 735 KNAKNSHALAFLNVNDTKLC---VASIDSGDIKTLIDEFKNEHEKAAILLIQVDEEGKIS 791

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +   V         A    + +A++L GG GGG+   A +GG N    + AI     + +
Sbjct: 792 LAAGVKNAP---IKAGAWVKFAAQIL-GGNGGGKDDFATAGGKNALAIEDAIRSSVEYAR 847

Query: 898 K 898
           +
Sbjct: 848 Q 848


>gi|73748005|ref|YP_307244.1| alanyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|83305846|sp|Q3ZWC3|SYA_DEHSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|73659721|emb|CAI82328.1| alanyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
          Length = 871

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/907 (37%), Positives = 512/907 (56%), Gaps = 47/907 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    
Sbjct: 1   MFSSDELRENYLKFFEEKGHKRIVSSSLIPHNDPTLLLTTAGMVQFKPYYMGVAKPENPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + + QKC R      D+++VG    H T FEMLGNFS G YFK+ AI  AW+ +T+  ++
Sbjct: 61  MASCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQ 179
              RL+ITVY +D+EA  LWK+  G+  ++I+R+   DNFW    ++GPCGPCSEI +D 
Sbjct: 116 PAERLWITVYLDDDEAIALWKEQ-GVPENRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174

Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G+    G    +   +  R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  ++
Sbjct: 175 GQETGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILM 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K N Y+ D+F  +++ +  ++G KY  +       R++ +H R  +FLIADG++P   
Sbjct: 235 QSKKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDKA 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + R LG   P ++ +  A+   M   YPEL + +  + E + SE+
Sbjct: 295 GRGYVLRRLLRRAVLFGRRLGLERPFLVDMAGAVINRMSGIYPELKKRQTYVLEMIASEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF +TL  GL LL+ ++       I +G  AFKLYDT+G P+++  +I   +GL+ +D+
Sbjct: 355 ARFSETLATGLELLEEIVRQTKGGRI-SGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VDL 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E QR++AR+                       T F+GY+L             
Sbjct: 413 DGFESEMEIQRTKARSSRKFSFDAAATAEAVKNMRHAEKTCFVGYEL------------- 459

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S +K I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG  I
Sbjct: 460 ----------AIQKSTIKDILTEGGTVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEII 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G R ++ +      G+F+H   V  G L+   +    I+ + RR ++ NH+ATH+L  
Sbjct: 510 TGGGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHILQT 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG  V Q GS +TPD LRFD +H KP++  E++ +E+ VND I +NLPV    M 
Sbjct: 570 ALREVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMP 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A+  G  AL G KY DRVRV+ V        S+ LCGGTHV+++GEI L  I+SESS
Sbjct: 630 YRHALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVTASGEIALFKIMSESS 686

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG+ A + +  Q + L  L+  L+ +      ++ E+ EE   L+    
Sbjct: 687 VGAGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKAVQ 746

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + Q++  +             V  +   ++ V++  L+   D L+ K+ SG+I+L G 
Sbjct: 747 NLERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GT 805

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   L +VT DL+ + ++A ++ +  +++ GGGG GG+P+MAQ GG + +K D+A+
Sbjct: 806 VTEDKPFFLCMVTPDLIAKGYHAGNIVKKLSQIAGGGG-GGKPNMAQGGGRDKSKLDEAL 864

Query: 890 AGVASFL 896
             V   +
Sbjct: 865 QAVKGMI 871


>gi|257887497|ref|ZP_05667150.1| alanyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257823551|gb|EEV50483.1| alanyl-tRNA synthetase [Enterococcus faecium 1,141,733]
          Length = 880

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/920 (37%), Positives = 505/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D I  I   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F  +       LP  +IDTGMGLE
Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q+   N++ DLF  +I A E++   +KY       ++++VI DH+R+ SF I D
Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +  +    L+G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKSENGTTLSGKDIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + ++ QR RAR+      S   +     L +    ++FIGY      
Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  IV+   ++ E   G+  +++FDQTPFYAE GG
Sbjct: 471 -----------------------SQLLVIVKGESLLNEIAEGE-AQMIFDQTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   +       +KA      H +  +  +    +  L ID   R ++  
Sbjct: 507 QVADQGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T   + + A   GA AL G KY   VRVV++        S  LCGGTHV++T  I
Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R+LQ  + +   +L  +       +  +I     ++  +   D  +L+ + D  ++K
Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKNPERINGKTIIAAQVKVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I++L    +E K S+L  +T++  +    A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      A+     +L +
Sbjct: 860 GKNPAGIPDALKAAKEWLAQ 879


>gi|328957192|ref|YP_004374578.1| alanine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328673516|gb|AEB29562.1| alanine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 882

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/919 (37%), Positives = 511/919 (55%), Gaps = 62/919 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF+  GH++ PS+SL+P  DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLSSNEVRQLFLDFFESKGHKVEPSASLVPFEDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFKE AI+ AW+ LT+  
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTLFEMLGNFSIGEYFKEEAIEWAWEFLTEDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY ED EA  +WK+  GL+ D I+     DNFW +   GP GP SEIF
Sbjct: 117 WLGLDPEKLYVTVYPEDTEAKNIWKEKIGLTDDHIV--DVADNFWDIG-AGPSGPDSEIF 173

Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE          E        R++EIWNLVF +F  +       LP  +IDTGMGLE
Sbjct: 174 YDRGEAFNDLPENDPENYPGGENERWLEIWNLVFSEFNHKPDGTYEPLPNKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I+  E ++  K       + ++ +VI DH+R+ SF I D
Sbjct: 234 RVVSILQDAPTNFETDLFMPIIKKVESLSKTKKYGENPTDDISFKVIADHVRAVSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  E  M  L+P + + M S YPE+++ +  I 
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIDEAFMYKLVPIVGSIMDSFYPEILEQEDFIV 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E+ERF +T++ GL +L+  ++ L    +  + G   FKLYDT+G P+++ ++   
Sbjct: 354 KVIKNEEERFHETINDGLTILNERITELKAKGETSIAGSDIFKLYDTYGFPVELTEEYAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G   +D   F + +  QR RARA   G  S   +   FS  +    + F+GY+     
Sbjct: 414 DEGFK-VDHEGFEKEMTAQRDRARAARSGEKSMGVQTRLFS--DLKEESLFVGYNKTTEM 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                    ++ I    E++  A  G++V ++FDQTPFYAE GG
Sbjct: 471 -----------------------GTLEVIATDEELLNSAQPGERVRLIFDQTPFYAEMGG 507

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G       + +      KKA      H +    +L    + VL +D   R +++ 
Sbjct: 508 QVADKGVVTDTKGKLIAKVVEVKKAPAGQPLHIVEVVEVLTVGETYVLEVDKSLRNKITR 567

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  ILG H +Q GS +TP+ LRFD TH   +T  EL  +E  VN+ I +
Sbjct: 568 NHTATHLLHQALKDILGEHANQAGSLVTPNHLRFDFTHFGQVTRDELDQMEQIVNEKIWE 627

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           ++ VVT   +   A   GA AL G KY D VRVV+V     G +S  LCGG HVS+T EI
Sbjct: 628 SISVVTVETDIAKAKEMGAMALFGEKYGDLVRVVNV-----GDYSIELCGGVHVSNTSEI 682

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A + L  + ++L  +A+ +K  Q  +V+ +V+++ 
Sbjct: 683 GIFKIVSESGIGAGVRRIEAVTSEAAYTLLQTEQKRLIEVAAVVKAQQTQDVITKVQQLQ 742

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            E ++ Q  +   + +L  +       +  ++  V  +S  +   D  +L+ + D  ++ 
Sbjct: 743 TELKEAQKENESLQAKLANDQAGDIFKNIQEVNGVTIVSAEVDVKDMNQLRQLADQWKQN 802

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S ++ L G S + K ++L  V  D + + F A DL +  A ++GGGG GGRP MAQ+G
Sbjct: 803 AVSNVLAL-GFSNDGKVNLLTAVDADTIKKGFKAGDLIKTIAPLVGGGG-GGRPDMAQAG 860

Query: 879 GPNGNKADQAIAGVASFLK 897
           G N      A+A VA ++K
Sbjct: 861 GKNPAGLSDALAKVAEWVK 879


>gi|289432002|ref|YP_003461875.1| alanyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|288945722|gb|ADC73419.1| alanyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 876

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/905 (37%), Positives = 513/905 (56%), Gaps = 47/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    + 
Sbjct: 8   SSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGMAKPENPRMA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC R      D+++VG    H T FEMLGNFS G YFK+ AI  AW+ +T+  ++  
Sbjct: 68  SCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNIPA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQGE 181
            RL+ITVY +D+EA  LWK+  G+  ++I+R+   DNFW    ++GPCGPCSE+ +D G+
Sbjct: 123 ERLWITVYLDDDEAIALWKEQ-GVPENRIVRLDAADNFWGPAGDSGPCGPCSEVHYDFGQ 181

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G    +   +  R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  ++Q 
Sbjct: 182 ETGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILMQS 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K N Y+ D+F  +++ +  ++G KY  +       R++ +H R  +FLIADG++P   GR
Sbjct: 242 KKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDKAGR 301

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + R LG  +P ++ +  A+ T M   YPEL + +  + E + SE+ R
Sbjct: 302 GYVLRRLLRRAVLFGRRLGLEKPFLVDMAGAVITRMSGIYPELKKRQTYVLEMIASEEAR 361

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TL  GL LL+ ++       I +G  AFKLYDT+G P+++  +I   +GL+ +D+  
Sbjct: 362 FSETLATGLELLEEIVRQTKGGRI-SGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VDLDG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +E QR++AR+                     G T F+GY+L               
Sbjct: 420 FESEMEVQRTKARSSRKFSFDAAATAEAVKNMRHGGKTCFVGYEL--------------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG  I  
Sbjct: 465 --------ARQKSTIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEIITG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G R ++ +      G+F+H   V  G L+   +    I+ + RR ++ NH+ATH+L  AL
Sbjct: 517 GGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHILQTAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG  V Q GS +TPD LRFD +H KP++  E++ +E+ VND I +NLPV    M   
Sbjct: 577 REVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMAYR 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A+  G  AL G KY DRVRV+ V        S+ LCGGTHV+++GEI L  I+SESS+ 
Sbjct: 637 HALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVTASGEIALFKIMSESSVG 693

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG+ A + +  Q + L  L+  L+ +      ++ E+ EE   L+      
Sbjct: 694 AGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKAVQNL 753

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + Q++  +             V  +   ++ V++  L+   D L+ K+ SG+I+L G   
Sbjct: 754 ERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GTVT 812

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K   L +VT DL+ + ++A ++ +  +++ GGGG GG+P+MAQ GG + +K D+A+  
Sbjct: 813 EDKPFFLCMVTPDLIAKGYHAGNIVKKLSQIAGGGG-GGKPNMAQGGGRDKSKLDEALQA 871

Query: 892 VASFL 896
           V   +
Sbjct: 872 VKGMI 876


>gi|318057084|ref|ZP_07975807.1| alanyl-tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318077856|ref|ZP_07985188.1| alanyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 889

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/907 (36%), Positives = 499/907 (55%), Gaps = 62/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH+++PS+SLI  +DPTL+   +GMVPFK  F G+ KP     
Sbjct: 1   MESAEIRRRWLRFFEERGHKVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F L+  RL+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GFGLEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+       + +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + +I  + ++TG+ Y  +  + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVRNMYETDTLRVVIDKATELTGVAYGASGASDVSLRVVSDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  +LD  ++        +L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTETRATGSTVLPGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A S    +G  +   +  + +  GAT F GY  L G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------EARIVGLLVDGVPAPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG   + +G  ++I DVQK   G+ VH   V+ G +  +  +   ID   RR ++
Sbjct: 511 GQIGDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQGRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 HEMDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVRNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A   L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYQFLAREHTVVSQLQELVKGRPEELPEKIAGML 745

Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    K + +  ++           +     ++  +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAAGAKDVHGTALVTGQVPDGTTADDLRRLVLDVRG 805

Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      ++ L  ++  +  +V+          F A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIPGDRPAVVALFAVTGGRPVTVVATNEAARERGFKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNG 882
           Q GG N 
Sbjct: 865 QGGGQNP 871


>gi|227551394|ref|ZP_03981443.1| alanyl-tRNA synthetase [Enterococcus faecium TX1330]
 gi|257895992|ref|ZP_05675645.1| alanyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|293377450|ref|ZP_06623652.1| alanine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|293570502|ref|ZP_06681557.1| alanyl-tRNA synthetase [Enterococcus faecium E980]
 gi|227179513|gb|EEI60485.1| alanyl-tRNA synthetase [Enterococcus faecium TX1330]
 gi|257832557|gb|EEV58978.1| alanyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|291609448|gb|EFF38715.1| alanyl-tRNA synthetase [Enterococcus faecium E980]
 gi|292643968|gb|EFF62076.1| alanine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 880

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/920 (37%), Positives = 505/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D I  I   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F  +       LP  +IDTGMGLE
Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q+   N++ DLF  +I A E++   +KY       ++++VI DH+R+ SF I D
Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +  +    L+G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLSGKDIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + ++ QR RAR+      S   +     L +    ++FIGY      
Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  IV+   ++ E   G+  +++FDQTPFYAE GG
Sbjct: 471 -----------------------SQLLVIVKGESLLNEIAEGE-AQMIFDQTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   +       +KA      H +  +  +    +  L ID   R ++  
Sbjct: 507 QVADQGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T   + + A   GA AL G KY   VRVV++        S  LCGGTHV++T  I
Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R+LQ  + +   +L  +       +  +I     ++  +   D  +L+ + D  ++K
Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKNPERINGKTIIAAQVKVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I++L    +E K S+L  +T++  +    A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      A+     +L +
Sbjct: 860 GKNPAGIPDALKAAKEWLAQ 879


>gi|302517973|ref|ZP_07270315.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|302426868|gb|EFK98683.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 889

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/907 (36%), Positives = 499/907 (55%), Gaps = 62/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH+++PS+SLI  +DPTL+   +GMVPFK  F G+ KP     
Sbjct: 1   MESAEIRRRWLRFFEERGHKVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F L+  RL+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GFGLEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+       + +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + +I  + ++TG+ Y  +  + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVRNMYETDTLRVVIDKATELTGVAYGASGASDVSLRVVSDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  +LD  ++        +L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTETRVTGSTVLPGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A S    +G  +   +  + +  GAT F GY  L G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------EARIVGLLVDGVPAPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG   + +G  ++I DVQK   G+ VH   V+ G +  +  +   ID   RR ++
Sbjct: 511 GQIGDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQGRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 HEMDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVRNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A   L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYQFLAREHTVVSQLQELVKGRPEELPEKIAGML 745

Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    K + +  ++           +     ++  +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAAGAKDVHGTALVTGQVPDGTTADDLRRLVLDVRG 805

Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      ++ L  ++  +  +V+          F A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIPGDRPAVVALFAVTGGRPVTVVATNEAARERGFKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNG 882
           Q GG N 
Sbjct: 865 QGGGQNP 871


>gi|257875750|ref|ZP_05655403.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257809916|gb|EEV38736.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 880

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/907 (36%), Positives = 496/907 (54%), Gaps = 63/907 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  + I+ I   DNFW +   GPCGP SEIF
Sbjct: 117 WMAFDPDKLYVTVYPKDTEAKRIWAEEVGLPPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G                 E ERY+EIWNLVF +F  Q       LP  +IDTGMGLE
Sbjct: 174 YDRGPEFNDVAEDDPENYPGGENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT---GMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q    N++ DLF  +I A   ++            ++ +VI DH+R+ SF I D
Sbjct: 234 RMVSIVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIDTAFLYKLVPIVGEIMESYYPEVLEQQEFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V++       + L G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRNEEERFHETINEGLDILNQVIAQVKADGQDTLAGQDIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F Q ++ QR+RARA      S   +     L +    ++F+GYD L   
Sbjct: 414 DEGLK-VDHQGFEQEMDAQRARARAARQTELSMGVQSAL--LTDIKVDSRFVGYDSLE-- 468

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 +S +  I+Q   + +   +G+  +++F +TPFYAE GG
Sbjct: 469 ---------------------ANSELLVIIQDEALHDSVSTGE-AKLIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ DTG  + +   +       KKA      H    +  L+  ++  L +D   R ++  
Sbjct: 507 QVADTGTIVAEDGTIVAEVTDVKKAPNGQFLHTATIKAPLKEGVNYFLQVDQHRRNKIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LGSH +Q GS + P  LRFD +H   +TS EL  +E  VN  I +
Sbjct: 567 NHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQIVNQKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LPVVT   + + A   GA AL G KY   VRVV+V        S  LCGGTHV++T +I
Sbjct: 627 ALPVVTIETDIDTAKGMGAMALFGEKYGHDVRVVNVA-----DWSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T Q A + L  ++ +LK++A  +K      VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSQEAYTLLHEEEAQLKAIAGIVKSAQLKEVVAKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + R+LQ  +     +L  +          ++  +  ++  ++  D  +L+ + D  ++K
Sbjct: 742 AQLRELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I++L   + + K ++L  + +   ++   A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 DHSDILVLA-TANDGKVNLLAAMNKAANEKGLKAGDLIKEIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKA 885
           G N    
Sbjct: 860 GKNPEGI 866


>gi|182439827|ref|YP_001827546.1| alanyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780491|ref|ZP_08239756.1| alanyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
 gi|205830221|sp|B1W3I1|SYA_STRGG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|178468343|dbj|BAG22863.1| putative alanyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660824|gb|EGE45670.1| alanyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
          Length = 889

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/923 (36%), Positives = 500/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH  +PS+SLI  +DPTL+   +GMVPFK  F G+ KP    V
Sbjct: 1   MESAEIRRRWLSFFEERGHTAVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQLAW+ LT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L+ITVY +D+EA ++W+   G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLDPEKLWITVYLDDDEAEQIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+     +   P        +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG++Y   N   V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGAENSTDVSLRVVADHIRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T  ++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +L+  +  +     ++L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILETAVTETKAAGGQVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR +A+A +    +G  +   +  + +  GAT+F GY  L G
Sbjct: 415 EQGLS-VDEDGFRRLMQEQRDKAKADARAKKTGHADLSAYREVADTAGATEFTGYASLAG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL DTG   +  G  +++ DVQK   G+ VH  +V+ G +     +  +ID   RR ++
Sbjct: 511 GQLADTGRIRLDTGAVIEVRDVQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIAGML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMS----HIISEVDSKELKSVMDALQK 818
            + +  +    K + +  L           DV   +     +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLAAAAGLVESAKDVRGTALVTGQVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   ++ L   +  +  +V+            A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N      A+A V   + +
Sbjct: 865 QGGGTNPAAIGDAVAAVERLVTE 887


>gi|317495192|ref|ZP_07953562.1| alanyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914614|gb|EFV36090.1| alanyl-tRNA synthetase [Gemella moribillum M424]
          Length = 863

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/902 (36%), Positives = 511/902 (56%), Gaps = 54/902 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            +L+FF + GH++ PS+SL+P +DP+L++ NSG+   K  F G+E P    +T  QK +R
Sbjct: 1   MYLDFFVEKGHKIEPSASLVPVDDPSLLWINSGVATLKKYFDGREIPENPRITNSQKSIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYI 127
                ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K   L++ +L +
Sbjct: 61  T----NDIENVGKTARHHTFFEMLGNFSIGDYFKPEAIAWAWEFLTSEKWLALEKEKLSV 116

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP--- 184
           TV+ ED EA+ +W+ + GL  D+IIRI    NFW + E GP GP +EIF+D+G       
Sbjct: 117 TVHPEDTEAYDIWRNVIGLPEDRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGPEADTWS 173

Query: 185 -GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    E +RY+E+WN+VF Q+          LP  +IDTGMGLER+ +VLQ+   N
Sbjct: 174 PKEEMYPGGENDRYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLERIVSVLQDVPTN 233

Query: 244 YDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +D DLF  +I+  E+++G KY       V  +VI DH+R+ +F IADG LP+NEGRGY+L
Sbjct: 234 FDTDLFIPIIREIEKLSGAKYGVSKEQDVAFKVIADHIRTVTFAIADGALPSNEGRGYIL 293

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RRA+ +A++LG     M  L   +   M   YP + ++   +++ +  E++RF +T
Sbjct: 294 RRLLRRAVRFAKILGLNSSFMYKLTDIVAEIMIDYYPNVKESVSFVKDVILKEEDRFHET 353

Query: 362 LDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           L  G  +L  + + +    ++++G+ AFKLYDT G P+++ ++     GL  +DI  FN+
Sbjct: 354 LHEGEAILTNIANEVKDTTKVISGEDAFKLYDTFGFPIELTEEYAEELGLT-VDIDGFNE 412

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E+Q+ RARA      S   +   ++     G ++F+GY  L                 
Sbjct: 413 EMEKQKERARASRHDDSSMQVQSDLYN--RIIGDSEFVGYTQLIEK-------------- 456

Query: 481 PIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   SS + AIV ++  ++++      V+VVF++TPFYAE+GGQ+ D G  I  G 
Sbjct: 457 --------SSKLLAIVDKEDNLLDKYTGADVVKVVFERTPFYAESGGQVADCGEIIALGF 508

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++ DV+K  +   +H   V  G L       L ++   R  +  NH+ATHLL+ AL  
Sbjct: 509 KGEVLDVKKLPDKRHIHFVKVVEGELLVGNEYGLVVNRNYRLNIEKNHTATHLLNEALRQ 568

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            +G+H+ Q GS +T D LRFD+TH  P+T  E++ +E  VN+ I   L + T  M   +A
Sbjct: 569 QVGTHIKQAGSLVTDDKLRFDITHFAPLTKEEIERVEQEVNEQIWNALEIKTEEMPIAEA 628

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA AL G KY D VRVVS+     G +S  LCGGTH +++ E+ +  I+SES + AG
Sbjct: 629 RKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNANSSEVGIFKIISESGVAAG 683

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG+ A  +L  Q++ L S+    K +  NV+ +V  +  E +KL       + 
Sbjct: 684 VRRIEALTGRAAYEYLRSQEDTLSSVEKLTKSNSTNVIEKVSSLQVEIKKLTKEKEILQQ 743

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           ++   +L+       ++  V+ ++ ++   +   LK ++D  + K+++ +I    I  E 
Sbjct: 744 KIANAELNNLVNDIKEVNGVSVLTSVVESENMNHLKQLVDNAKSKLENYVIAFASI-NED 802

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K + ++ V + + D++NA  L  + A V   G GGGRP MAQ+G  N    ++A   + +
Sbjct: 803 KVNFVVAVDKAITDKYNAGKLVNVLATVC-DGRGGGRPDMAQAGAKNKENINKAFEELLA 861

Query: 895 FL 896
            +
Sbjct: 862 NI 863


>gi|257460412|ref|ZP_05625513.1| alanyl-tRNA synthetase [Campylobacter gracilis RM3268]
 gi|257441743|gb|EEV16885.1| alanyl-tRNA synthetase [Campylobacter gracilis RM3268]
          Length = 847

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/895 (38%), Positives = 505/895 (56%), Gaps = 55/895 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64
            IR+ +L FF   GH+++PS+ L+P +D +L+FTN+GMVPFK+IFTG        + T+ 
Sbjct: 2   DIRSEYLNFFASKGHQIIPSAPLVP-DDDSLLFTNAGMVPFKSIFTGAVPRPTPPIRTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + +
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKEQAIAYAWEFITEILKLPKDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LY+TV+++D++A++ W +   ++ ++I R   +DNFW+M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHEKDDKAYEFWAR--HIARERIYRFGDHDNFWAMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  + + K +N
Sbjct: 179 HSPEDYMGGDGDRFLEIWNLVFMQYERSKDGKLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  LF  LI    ++ G  Y   +  ++RVI DH+RS  FL+A G     EGRGYVLRR
Sbjct: 239 YDSSLFMPLIDEVAKLCGRPYVYESGASYRVIADHIRSVVFLLAQGTNFNREGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  +C  MG  Y  L + K  ++E ++ E+ERF  TL 
Sbjct: 299 ILRRAVRHGYLLGIKEPFMYRLVDKVCELMGGHYAYLNEKKEAVKEQIKLEEERFFATLA 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L+     EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F+  + 
Sbjct: 359 NGIELFNEELART--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLR-VDEAKFDALMS 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR  A+A   G G       + +L EK+G  +F GY+ L                    
Sbjct: 416 EQRQIAKAAWKGSGDKNVRGDFKALLEKFGENKFSGYEEL-------------------- 455

Query: 484 LTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                +S V A++ +    V+E  +G     +FD TPFYA++GGQ GD+G          
Sbjct: 456 ---SRTSKVLALLNEDFAEVDELKAGDIGWAMFDVTPFYAQSGGQTGDSGEVESIADVFD 512

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                       ++ + +          +V     + R Q++ +HSATHLLH AL  +LG
Sbjct: 513 TQKFYG------LNLSHLRLNRNLKIGDIVGLKVSEEREQIARHHSATHLLHAALRAVLG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           +H++Q GS +  D LRFD +H K ++  EL  IE+ VN+ + +     T IM+ +DA  S
Sbjct: 567 AHIAQAGSLVEADRLRFDFSHPKALSDEELAKIEEFVNNAVCKGCAAKTEIMDIDDAKNS 626

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY  +VRVVS      G  S  LCGG HV +  EI   +IV ES + AG+RR
Sbjct: 627 GAIALFGEKYGSKVRVVSF-----GEISKELCGGIHVRNLSEIGSFFIVKESGVSAGVRR 681

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A +  +    KL  +++ LK      +  +E++ +E R L+    + K   +
Sbjct: 682 IEAVCSRAALNLALQNRAKLAEISAELKG--IEPLRAIEKLKDEIRSLK---DQIKHASS 736

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
              L+   + D       +    S ++K+++D  +   +   IML+ +  + K S+   V
Sbjct: 737 SHALAFLNVGDTKLCVASVE---SGDIKTMIDEFKNSHEKAAIMLMQVGADGKISIAAGV 793

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                    A +  +L A++LGGGG GGR   A +GG +  K ++AI    S+ K
Sbjct: 794 KNAP---IKAGEWVKLVAQILGGGG-GGRDDFATAGGKDVLKIEEAIKEAISYAK 844


>gi|257866118|ref|ZP_05645771.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257872448|ref|ZP_05652101.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257800052|gb|EEV29104.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257806612|gb|EEV35434.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 880

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/907 (36%), Positives = 496/907 (54%), Gaps = 63/907 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  + I+ I   DNFW +   GPCGP SEIF
Sbjct: 117 WMAFDPDKLYVTVYPKDTEAKRIWAEEVGLPPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G                 E ERY+EIWNLVF +F  Q       LP  +IDTGMGLE
Sbjct: 174 YDRGPEFNDVAEDDPENYPGGENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT---GMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q    N++ DLF  +I A   ++            ++ +VI DH+R+ SF I D
Sbjct: 234 RMVSIVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIDTAFLYKLVPIVGEIMESYYPEVLEQQEFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V++       + L G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRNEEERFHETINEGLDILNQVIAQVKADGQDTLAGQDIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F Q ++ QR+RARA      S   +     L +    ++F+GYD L   
Sbjct: 414 DEGLK-VDHQGFEQEMDAQRARARAARQTELSMGVQSAL--LTDIKVDSRFVGYDSLE-- 468

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 +S +  I+Q   + +   +G+  +++F +TPFYAE GG
Sbjct: 469 ---------------------ANSELLVIIQDEALHDSVSTGE-AKMIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ DTG  + +   +       KKA      H    +  L+  ++  L +D   R ++  
Sbjct: 507 QVADTGTIVAEDGTIVAEVTDVKKAPNGQFLHTATIKAPLKEGVNYFLQVDQHRRNKIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LGSH +Q GS + P  LRFD +H   +TS EL  +E  VN  I +
Sbjct: 567 NHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQIVNQKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LPVVT   + + A   GA AL G KY   VRVV+V        S  LCGGTHV++T +I
Sbjct: 627 ALPVVTIETDIDTAKGMGAMALFGEKYGHDVRVVNVA-----DWSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T Q A + L  ++ +LK++A  +K      VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSQEAYTLLHEEEAQLKAIAGIVKSAQLKEVVAKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + R+LQ  +     +L  +          ++  +  ++  ++  D  +L+ + D  ++K
Sbjct: 742 AQLRELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I++L   + + K ++L  + +   ++   A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 DHSDILVLA-TANDGKVNLLAAMNKAANEKGLKAGDLIKEIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKA 885
           G N    
Sbjct: 860 GKNPEGI 866


>gi|302525836|ref|ZP_07278178.1| alanyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302434731|gb|EFL06547.1| alanyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 887

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/918 (36%), Positives = 506/918 (55%), Gaps = 59/918 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   I   FL  F+  GH  +PS+ LI  +DP L+F N+GMV FK  F G+  P Y   
Sbjct: 1   MDTHEITDRFLRHFESRGHTRVPSAPLI-LDDPNLLFVNAGMVQFKPYFLGEAPPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D+D VG+T RH+TFF+M GNFSFG YFKE AI+ AW+L+TK     
Sbjct: 60  TSVQKCVRT----PDIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAIENAWELITKSQDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY++D EA  LW+K++GL +D+I      DN+W M   GP GPCSEI+
Sbjct: 116 GFGLDPDRIWATVYEKDSEAAGLWRKLTGLPSDRIQVRDGKDNYWDMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------KQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ  + +            LPK +IDTGMG+
Sbjct: 176 YDRGPAY-GREGGPVADEDRYIEIWNLVFMQDVRGDQSPKLGHPPIGELPKKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+AT+LQ   N Y+ DL + +I  +E+ +G +Y     + V  RVI DH R+   LI D
Sbjct: 235 ERVATILQGVENVYETDLVRPVIGRAEEFSGRRYGANHADDVRFRVIADHARTGVLLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RR +   RLLG  EP++      +   MG  YPELI     I 
Sbjct: 295 GVTPGNDGRGYVLRRLLRRIVRSTRLLGVQEPVLQEFAKVVSQTMGPTYPELISGFDRIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E +R E+E F  TL  G  + D   +   K   ++L GD AF+L+DT+G P+D+  ++  
Sbjct: 355 EVVRVEEEAFLATLTSGSRIFDLAAAETKKGGGDVLAGDKAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL  +D   F   +EEQR RA+A +    SG  +   +  + E++G T+F+GY  L+ 
Sbjct: 415 EQGLT-VDEAGFRTLMEEQRKRAKADAAARKSGHGDLSEYRKVLEQHGETEFLGYTELQA 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + V  +++ G  V    +G+K E+V D+TPFYAE+G
Sbjct: 474 D-----------------------AKVVGLLEDGLPVRSVAAGRKAELVLDRTPFYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ DTG  +GDG+ L++ DVQK   G+FVH   V +G +  +  L  ++D   R  +  
Sbjct: 511 GQIADTGVLVGDGVELKVLDVQKIVPGLFVHRVEVTQGEVGIDTRLTGSVDANRRLSIER 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHL+H A+    G   +Q GS   P  +RFD T    +++  L  +E  VND +  
Sbjct: 571 SHSATHLVHAAVRGAYGKRAAQAGSLNAPGRMRFDFTTPGAVSTDILTEVEQEVNDYLQT 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           ++ V +    ++ A+  GA AL G KY + VRVV +     G +S  LCGGTHV   G++
Sbjct: 631 DVEVQSYTTTKDKALELGAVALFGEKYGNDVRVVDM-----GEYSRELCGGTHVGRIGQL 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ +VS++S+ +G+ R+EA+ G  A  H+  +   +  LA+  KV    + GR+E++  
Sbjct: 686 GLVKLVSDASVGSGVHRVEALVGPDALKHVRKEQLLVSQLANTFKVPSDELPGRIEDVLS 745

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             +  +    + + Q  +            ++ V+ ++ ++ +VD   L+++   ++ ++
Sbjct: 746 RLKNAEKEIEQLRTQQVLGSAGALADKAQDVSGVSVVAEVVPDVDGNGLRALASDIRGRL 805

Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
               G++ L   S EK A V+   +        A  L    A+ + GG GGG+P MAQ G
Sbjct: 806 GDRPGVVALFAPSGEKVAFVVATTSAARDKGIAAGKLVPSFAEAI-GGRGGGKPDMAQGG 864

Query: 879 GPNGNKADQAIAGVASFL 896
           G N   A+QA+  + + +
Sbjct: 865 GSNPAGAEQAVTALRAAV 882


>gi|294102019|ref|YP_003553877.1| alanyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616999|gb|ADE57153.1| alanyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 881

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/908 (37%), Positives = 509/908 (56%), Gaps = 47/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR+ F++F++  G +  PS SLIP NDP+L+FT +GMVPFK  + G ++P +    
Sbjct: 5   TGKEIRSLFIDFWESKGSKHYPSFSLIP-NDPSLLFTIAGMVPFKPYYLGIQQPEFTRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVGRT RHHTFFEMLGNFS+G YFK+ AI   W+ LT+   L+ 
Sbjct: 64  TSQKCVRT----NDIENVGRTARHHTFFEMLGNFSWGDYFKKEAITWGWEFLTEVIGLEP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY T+Y +DEEA+ +W+   GL  +KI R   ++NFW M  TGPCGPCSEI +DQG  
Sbjct: 120 ERLYATIYKDDEEAYSVWRNEVGLPENKIYRFDKDENFWFMGNTGPCGPCSEIIYDQGPE 179

Query: 183 IPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P        +RY+EIWNLVF QF+ Q       LPK +IDTGMGLER+ +++Q  
Sbjct: 180 FSCGKPTCDVGCNCDRYLEIWNLVFTQFDLQEDGTLVPLPKKNIDTGMGLERLTSIVQRV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
             +++ DLFK LI     +TG+ Y  +   N   RVI DH+RS +F+IADGILPAN+GRG
Sbjct: 240 RTDFETDLFKPLIDHICAMTGVTYGSSPSHNLAVRVIADHIRSVAFMIADGILPANDGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  Y +L+G   P ++ L P +   M   Y EL+  + +IE+ +  E++RF
Sbjct: 300 YVLRRLIRRAARYGKLIGLDRPFLLELFPDVLDLMADPYRELLDNRPMIEQIVSMEEKRF 359

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           G+TL +G  L++  +S L    +  L+G +AF+LYDT+G PL++  +I        +D  
Sbjct: 360 GRTLQQGTELIEQEISRLRLRHVDALSGTIAFELYDTYGFPLELTTEICAE-NDIKVDEA 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+  +E+QR RARA S  L S     ++  +  + G T F GY                
Sbjct: 419 GFHVEMEKQRERARASSKQLSSEMKGDVYSQIAAEKGQTSFEGY---------------- 462

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                  + + + + V A+++ G+ V+    G+  E V   +PFYAE GG++GD G    
Sbjct: 463 -------VLSELDTEVVALIKDGQPVDFLSEGESGEAVLKVSPFYAERGGEIGDQGLLSA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G+++ +TD   +   + VH   V  G+L   +++  ++D + R  +  NH+ATHLLH A
Sbjct: 516 AGVKVCVTDTTSETADLIVHRVTVLEGVLTEGLAVHASVDKEKRESIRRNHTATHLLHEA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           LS +LGSHV Q GS +    LRFD TH + +T  ++ ++ED VN  I +N+P+ T   + 
Sbjct: 576 LSQVLGSHVRQAGSLVNEALLRFDFTHFESMTREQIAAVEDMVNRQILKNIPLETIESDL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E A   GA AL   KY D VRVV +        S+ LCGG HV +TG+I    I+ E  I
Sbjct: 636 EQAREMGAKALFDEKYGDIVRVVRI-----KDFSTELCGGLHVDATGDIGAFKIIKEEGI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G RRI A+TG  A          ++ L + L ++   +V  VE +  E + L     +
Sbjct: 691 GSGTRRITALTGLNAFRAFQNSFRVVEDLCNVLTLTTDELVSHVENMQAEIKGLGRKIDE 750

Query: 777 RK---LQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K   L   +++    +I     +        V +  L+ + D ++ K ++ +I+L    
Sbjct: 751 LKLNNLAAAIDESVKKEILSNGTSIFQGSFKGVSADMLRELCDRIKVKNKNIVIVLASQI 810

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            E+   ++ +  ++ +    +A  + +  A +LGGGG GG+P +AQ+GG    K D+A  
Sbjct: 811 SEENVLIVAMADDEAMKAGAHAGKIVKEVAVILGGGG-GGKPAIAQAGGKKPEKIDEAFH 869

Query: 891 GVASFLKK 898
            +   ++K
Sbjct: 870 ALRGIVEK 877


>gi|81428001|ref|YP_395000.1| alanyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|123564683|sp|Q38YN9|SYA_LACSS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78609642|emb|CAI54688.1| Alanyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 878

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/918 (36%), Positives = 489/918 (53%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF++ GH++ PS+SLIP  DPTL++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTSAQVRQMFLDFFKEKGHDVEPSASLIPDEDPTLLWINSGVATLKKYFDGRVVPNN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSVGDYFKEDAIPWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D++A ++W +  GL+ D+II +   DNFW + E GPCGP SEIF
Sbjct: 117 WIGLDPEKLYVTVYPKDKDAHRIWHEKVGLAEDRIIEV--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E ERY+E+WN+VF +F      E    P  +IDTGMGLE
Sbjct: 174 YDRGQSFNNVSEDDPENYPGGENERYLEVWNIVFSEFNHLPNGEYVEQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIAD 288
           R+ +V+QE   N++ DLF  LI+A+  ++  K  G N    ++ ++I DH R+ +F I D
Sbjct: 234 RLVSVIQEAPTNFETDLFMPLIEATAAMSDHKQYGQNAADDISFKIIADHARAVTFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G +PANEGRGYVLRR++RRA+   + LG  +  M  L+P +   M S YP++++ K  IE
Sbjct: 294 GAMPANEGRGYVLRRLIRRAILNGKKLGINDAFMYKLVPIVGEIMHSYYPDVLEQKDFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +RSE++RF +TL+ GL LL+  +       +  +NG  AFKL+DT G P+++  +   
Sbjct: 354 KVIRSEEDRFRETLNDGLRLLNQTIEAVKAENETEINGADAFKLFDTFGFPIELTTEYAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + +  Q++RAR       S  ++     L      ++F GY  L   
Sbjct: 414 DEGLT-VDQAGFEKEMAAQKARARNARSDEQSMGSQNEV--LLNIKTKSEFTGYSELE-- 468

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+Q     E   +G   ++VF+ TPFYAE GG
Sbjct: 469 ---------------------TESRLADIIQDNAEQESVTTG-VAQLVFEATPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G       ++       + A      H +     + + +   L++D   R  +  
Sbjct: 507 QVADQGIIKNLAGQVVAEVTDVQYAPNGQPLHTVKVLKEMISGVHYTLSVDPTFRGGVVK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L  +E  VND I  
Sbjct: 567 NHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNLGQVTPDQLAEVEQIVNDKIWA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LPV T   + E A   GA AL   KY   VRVV +     G +S  LCGGTH ++T ++
Sbjct: 627 ALPVNTVETDIETAKQMGAIALFTEKYGKTVRVVQI-----GDYSMELCGGTHANNTSDL 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            L  I SES I AG RRIEA+T + A  +L  +   L  LAS LKV    ++  +++++ 
Sbjct: 682 GLFKITSESGIGAGTRRIEAVTSKAAFKYLNDKQVLLNELASELKVAQTKDLPKKIQQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + +  Q  + + K +   E       +  +      ++         EL+ + D  Q+K
Sbjct: 742 ADLKAEQKENEQLKAKFAQEQAGNVFENVVEAGQWRLVAADAKVAGMNELRQLADQWQQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L  ++ + K S+++ V  D +     A DL +  A ++GGGG GGRP MAQ+G
Sbjct: 802 QISDVLVLATVAGD-KVSLIVAVAPDAIKAGIKAGDLIKQIAPLVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+A    FL
Sbjct: 860 GKNPAGIPDALAAAKEFL 877


>gi|157414790|ref|YP_001482046.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|205830015|sp|A8FKT2|SYA_CAMJ8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157385754|gb|ABV52069.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747428|gb|ADN90698.1| Alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931702|gb|EFV10657.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327]
          Length = 842

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/897 (38%), Positives = 507/897 (56%), Gaps = 62/897 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEFLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V          V+   TPFYA +GGQ  D          + 
Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLKNTPFYATSGGQSAD-------SGFMA 503

Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             +V    +   ++ + V+ G   +    +   ID + R Q++ +HSATHLLHHAL  IL
Sbjct: 504 KREVLDTQKFFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREIL 563

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +  + LRFD TH K ++  EL++IE  VN++I  +   +   M  E+A  
Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALSKEELENIEKRVNEMIINSSEAILENMPLEEAKK 623

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+R
Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+  + A   +  Q E+L  +   LK +  +++  ++++  E   L+          
Sbjct: 678 RIEAVVSKAALEFVKNQLEELSKVKDELKNN--DILSGIKKLKNEILSLKNELKN----S 731

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           +  +L    I  V      I   D+ ++K+++D  + K    +I+L+ + K++K ++   
Sbjct: 732 SKTELDSKNIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           V +D+     A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 788 V-KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|239617978|ref|YP_002941300.1| alanyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|239506809|gb|ACR80296.1| alanyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 873

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/906 (37%), Positives = 509/906 (56%), Gaps = 50/906 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FL+FF+   H +LPS+SLIP NDP LMFT +GMVPFK IF G+ +P Y  V
Sbjct: 4   MTGHEIRESFLKFFESKKHTILPSASLIP-NDPQLMFTVAGMVPFKPIFWGKIEPTYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR      D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   + 
Sbjct: 63  ATCQKCVRTV----DIDNVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWAWEYITEVLKIP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + +L+++VY +D+EA+++W+   G+S  +I+R+  +DN+W     TGPCGP SEIF D G
Sbjct: 119 EDKLWVSVYHDDDEAYEIWRNNVGISEKRIVRLGKDDNWWGPAGPTGPCGPSSEIFVDTG 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
              +C        + +  R++E WNLVF ++          L K +IDTG+GLERMA ++
Sbjct: 179 RTKDCPDVENCSPACDCGRFLEFWNLVFTEYNMDGDGNLTRLKKKNIDTGLGLERMAAIM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q  ++N++ D+FK +++  E +  +KY  ++   V+ RVI DH R+ +FLI DG+LP+NE
Sbjct: 239 QGVSSNFETDMFKPIVERIEGLLNVKYGVSDKSDVSIRVIADHSRAITFLITDGVLPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRIMRRA+ +  LLG ++P +  +   +   +G  YPE+ +   L+EE    E+
Sbjct: 299 GRGYVLRRIMRRAIRHGSLLGSSKPFLYKIPEVVVVTLGDVYPEIKEKLSLVEEITLKEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  T + G   L  ++    +   L+G+  F L+DT+G  L+++++I+  + L  +D 
Sbjct: 359 ERFLTTFESGTKRLWQIVEKKNR---LDGEDLFLLHDTYGFHLELVEEIVAEKNL-PLDK 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR RAR  +  +        +    E  G T+F+GY+ L            
Sbjct: 415 EGFKALMEQQRERARKAAGNVEYEKDSSRYRKAYEIIGGTKFVGYEKL------------ 462

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V + +  I++  +I EE   G+K E++FD TPFY E GGQ+ D G   
Sbjct: 463 -----------TVKTKIAHILKDEKITEELSKGEKGELIFDITPFYPEKGGQVADRGIIK 511

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++  V    + + VH  +V+ G +++     L +D +NRR  + NH+ATHLLH 
Sbjct: 512 TAEGFAEVEHVFIPFQDLIVHRVLVKSGKIKSGDLATLIVDKENRRSTARNHTATHLLHA 571

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV Q GS +  + LRFD +H   +   E++ IE+ VN  I + +PV     +
Sbjct: 572 ALRKILGEHVKQAGSLVEAERLRFDFSHYTALDKEEIQKIEELVNRKILEAIPVDVAEKS 631

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+       AL   KY DRVRVVS+     G  S  LCGGTHV +TGEI L  IVSESS
Sbjct: 632 FEEVKNEDVVALFQEKYGDRVRVVSI-----GDFSKELCGGTHVKNTGEIGLFKIVSESS 686

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEAITG ++   +      ++ L + L+V Q   V ++  +  + +       
Sbjct: 687 VSAGVRRIEAITGLKSLEKMTELMNLVEELRAVLEVPQEAFVEKIINLNGKLKDQAKELK 746

Query: 776 KRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L   + +        + D   ++ ++       +++  D L +K+  G+++L   
Sbjct: 747 RLKEKLLSGEGASSLERKLTLDDAQVLARVVENTSMDVVRNTADVLMQKLGKGVVILFNR 806

Query: 831 SKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E  K   ++ V+++L  ++ A DLAR  A  LGGGG GGRP  AQ+GG    + +  I
Sbjct: 807 MPESGKVVFVVKVSKELQQKYRAGDLARKIATELGGGG-GGRPDFAQAGGKKIERVEWVI 865

Query: 890 AGVASF 895
             +  F
Sbjct: 866 KNLEKF 871


>gi|261207793|ref|ZP_05922478.1| alanyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289566245|ref|ZP_06446677.1| alanyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294616584|ref|ZP_06696360.1| alanyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|294617900|ref|ZP_06697509.1| alanyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|260078176|gb|EEW65882.1| alanyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289161952|gb|EFD09820.1| alanyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291590534|gb|EFF22267.1| alanyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|291595845|gb|EFF27129.1| alanyl-tRNA synthetase [Enterococcus faecium E1679]
          Length = 880

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/920 (36%), Positives = 502/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D I  I   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F  +       LP  +IDTGMGLE
Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q+   N++ DLF  +I A E++   +KY       ++++VI DH+R+ SF I D
Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + ++ QR RAR+      S   +     L +    ++FIGY      
Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  IV+   ++ E   G+  +++FDQTPFYAE GG
Sbjct: 471 -----------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   +       +KA      H +  +  +    +  L ID   R ++  
Sbjct: 507 QVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T   + + A   GA AL G KY   VRVV++        S  LCGGTHV++T  I
Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R+LQ  + +   +L  +           I     ++  +   D  +L+ + D  ++K
Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I++L    +E K S+L  +T++  +    A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      A+     ++ +
Sbjct: 860 GKNPAGIPDALKAAKEWVAQ 879


>gi|255039401|ref|YP_003090022.1| alanyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254952157|gb|ACT96857.1| alanyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 886

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/930 (34%), Positives = 484/930 (52%), Gaps = 81/930 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+   H ++PS+ L+  NDPTLMF NSGM  FK+ F G   P  + +
Sbjct: 1   MTSHQIRQAFLDFFRSKEHLIVPSAPLVAKNDPTLMFNNSGMAQFKDFFLGNGTPPSRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL++VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT  + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTDVYKLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY++V++         D+EA+ LWK I G   ++II     DNFW M +TGPCGPCS
Sbjct: 121 KDRLYVSVFEGNEADGVPFDQEAWDLWKGIVG--EERIILGNKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + +EIWNLVFMQFE++       LP   +DTGMG
Sbjct: 179 EIHIDLRSPAEVAEVSGKSLVNNDHPQVVEIWNLVFMQFERKADGSLIPLPSTHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFL 285
            ER+   +Q+KT+NYD D+F++ I   E ++G KY  N+     +  RVI DH+R+ SF 
Sbjct: 239 FERLCMAIQQKTSNYDTDVFQNTINVLETLSGKKYGQNDEPFADIAMRVISDHIRAVSFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           I DG LP+N   GYV+RRI+RRA+ Y    LG+ EP    L+P L  +    + EL   +
Sbjct: 299 ITDGQLPSNVKAGYVIRRILRRAVRYGYSYLGFQEPFFHKLVPVLAEQFKDVFTELKDQE 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQ 402
             +   +  E++ F +TL+ GL  LD ++  L +     + GD  F+L DT G P+D+  
Sbjct: 359 EFVTRVILEEEKSFLRTLESGLKRLDSIIGGLKETGLNTIPGDEVFELSDTFGFPVDLTA 418

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            I   +    ID   +  AL EQ+ R+R       +      W  L+E  G  +F+GYD 
Sbjct: 419 LIAREKNFR-IDEAGYQDALAEQKKRSRQD-----AAKEATDWIELRESDGV-EFLGYDF 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                 + + RKV                               +G++  +V D+TPFYA
Sbjct: 472 EETHSHIVKYRKVKT----------------------------KAGEEYHIVLDRTPFYA 503

Query: 523 EAGGQLGDTGCAIGDGI------RLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLT 574
           E GGQ+GDTG  + +        R       KK   +FVH +  +           +   
Sbjct: 504 EMGGQVGDTGALLLNSGSKEDGARSISIVDTKKENDLFVHISRDKNLDEALSGAGIVTAQ 563

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           I+ + R ++  NH+ATHL+  ++  +LG+HVSQ GS +  + LRFD  H   +T  EL+ 
Sbjct: 564 INVERRNKIKSNHTATHLMLSSMREVLGTHVSQKGSYLNDEVLRFDFAHFSKVTDEELRK 623

Query: 635 IEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           IED VN+ I +N+ +   R +  + A+ +GA A  G KY D VR++  + +     S  L
Sbjct: 624 IEDRVNEKIRENIALEERRNVPIQQALDAGATATFGEKYGDFVRLIIFDPK----FSFEL 679

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHV STGEI +   +SE S+ AG+RR+EA+TG++A   +  Q+E L  +   LK   
Sbjct: 680 CGGTHVPSTGEIGVFKFISEGSVSAGVRRVEAVTGEKALELMRQQEETLNKIKDLLK-GP 738

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD------VNFMSHIISEVDSK 807
            +++  VE + EE   LQ   +  + +  ++ L    + +       N +   +    + 
Sbjct: 739 TDLIKAVENLIEERSALQKKISALENEK-IQALKTTLVENMETHSTFNLIVQKVDVPSAD 797

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGG 865
            LK +   L+ ++++ +I + G     K  + + + E+++     NA  + +  A+ + G
Sbjct: 798 SLKQLSYELRDQVEN-LIAVFGAEIGGKPQLSVFIAENIVAETGLNAGKIVKDLAREIRG 856

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           G GGG+P  A +GG + +  D A+      
Sbjct: 857 G-GGGQPFFATAGGSDASGLDVALEKAKGL 885


>gi|269216088|ref|ZP_06159942.1| alanine--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269130347|gb|EEZ61425.1| alanine--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 901

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/917 (36%), Positives = 501/917 (54%), Gaps = 61/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQ 59
              + IR  +L FF++ G + LPSSSLIP +DP+L+ T++GMV FK  F   +   P Y 
Sbjct: 22  MTTAEIREKYLRFFEEKGCKRLPSSSLIP-DDPSLLLTSAGMVQFKPYFLHVKEFDPNYI 80

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TTVQKCVR     ND+D +G T RH +FFEMLGNFSFG YFK      A++  T+  +
Sbjct: 81  GATTVQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGVYFKHEMCTWAYEFSTEVLE 136

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + RLY TV+++D+E  ++WK + G+    I R+  +DNFW    TGPCGPCSEI+FDQ
Sbjct: 137 LPKDRLYFTVFEDDDETIEIWKSL-GVLESHITRLGEDDNFWRAGPTGPCGPCSEIYFDQ 195

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G    G  P   ++G+R++E WN VF QF+ Q       LP  +IDTGMGLERMA ++Q 
Sbjct: 196 GPDFEGDAP--GDDGDRFLEFWNCVFTQFDGQEDGTLAPLPTKNIDTGMGLERMAAIMQG 253

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN------------IVNHRVIVDHLRSSSFLIA 287
             +NY+ D+ + L+   E+++G  Y G               ++ R+  DH RS +F+IA
Sbjct: 254 VQSNYETDVLRDLVAVGERLSGASYRGGTNATAGDGAQAKVDLSLRICADHSRSVAFMIA 313

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DGILP+NEGRGYVLRR++RRA+ +   LG   P +   L  +   MG  YPE++  + L+
Sbjct: 314 DGILPSNEGRGYVLRRLLRRAVMHGHKLGIEGPFLGEYLAKIIELMGDVYPEIVDNRELV 373

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E  + SE+ERFG+TL  G   L   LS L    +L G  AF L+DT+G P+++ ++I   
Sbjct: 374 ERIILSEEERFGRTLRTGQAYLVDELSALD-GSVLPGQTAFTLHDTYGFPIELTEEICSE 432

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLR 464
            G+  +D   F+  +EEQRSRARA + G           +     ++ GA  F+GY+   
Sbjct: 433 SGVT-VDHAGFDACMEEQRSRARAATKGDAEAAWSTYGGVHAETLKEVGANIFVGYEHTE 491

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   +S + A+++ G  V     G++ E+V  +TPFYAE 
Sbjct: 492 -----------------------AASSIVALIKDGARVARIEQGEEAELVLAKTPFYAEM 528

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GG++GDTG   G G   Q+ D +    G+  H   V +G L     +   +D   R +++
Sbjct: 529 GGEVGDTGTIEGAGGYAQVEDTKAPEAGLICHRVKVVKGSLSVGEDVAAAVDADRRARIT 588

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATH+LH AL  +LG HV+Q GS + PD LRFD  H  P+T+ E+K +ED  N +I 
Sbjct: 589 RNHTATHILHAALRQVLGDHVNQAGSYVGPDRLRFDFAHFAPMTADEIKQVEDLANAVIM 648

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
               +     + ++A ASG  AL G KY D VRVV     + G  S  LCGG HV +T E
Sbjct: 649 SATDMNIYETSLDEARASGVTALFGEKYGDTVRVV-----EAGGFSRELCGGCHVRNTAE 703

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I LL +V+E+S+ A  RRIEA+T   A  +L  +  +L + AS LK +  +V  RV    
Sbjct: 704 IGLLKVVAETSVAANTRRIEAVTSYAALDYLNTRAAELDAAASALKSAPLDVAARVAANL 763

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIA----DVNFMSHIISEVDSKELKSVMDALQKKI 820
              ++ +    + K      D S +  A        +   +  +D   +++V D ++ ++
Sbjct: 764 ATIKEFEAEARRAKQAAAESDASAYLDAMVDVGYPLIVIRVDGLDGGAMRNVWDVVRARM 823

Query: 821 QSGIIMLVGISKEKKASVL-IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
                +++G   + K  ++     E +   FNA D+ + ++  + GG GGG+P MAQ+GG
Sbjct: 824 PKPGALVLGAVTDGKPIIMAAASDEAVAAGFNAKDVIKQASSHIKGG-GGGKPTMAQAGG 882

Query: 880 PNGNKADQAIAGVASFL 896
            + +  D A+    +FL
Sbjct: 883 KDASGMDAALEAARAFL 899


>gi|224105089|ref|XP_002313683.1| predicted protein [Populus trichocarpa]
 gi|313471500|sp|B9HQZ6|SYAP_POPTR RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|222850091|gb|EEE87638.1| predicted protein [Populus trichocarpa]
          Length = 994

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/925 (35%), Positives = 500/925 (54%), Gaps = 69/925 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  +IR  FLEF+    H++LPS+SL+P +DPT++ T +GM+ FK IF G+        T
Sbjct: 99  SGDAIRRRFLEFYASRSHKVLPSASLVP-DDPTVLLTIAGMLQFKPIFLGKAPRQVPRAT 157

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+L TKEF L  
Sbjct: 158 TAQKCIRT----NDVENVGRTTRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTKEFGLPA 213

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+++VY++D+EAF++W    G+  ++I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 214 DRLWVSVYEDDDEAFEIWHDEVGVPVERIKRMGEEDNFWTSGATGPCGPCSELYYDFHPE 273

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       +  R+IE +NLVFMQ+ + +      L + +IDTG+GLER+A +LQ+  N
Sbjct: 274 -RGYKNTDLGDDSRFIEFYNLVFMQYNKMDDGSLEPLKQKNIDTGLGLERLARILQKVPN 332

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++  + Y   +    +N ++I DHLR+  +LI+DG+LP+N GRGY
Sbjct: 333 NYETDLIYPIIEKAAELANISYALADDRTKMNLKIIGDHLRAIVYLISDGVLPSNIGRGY 392

Query: 300 VLRRIMRRAMCYARLLGY-----TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           V+RR++RRA+   RLLG          +  +   +        P++      I + L+ E
Sbjct: 393 VVRRLIRRAVRTGRLLGVKGGGEDGVFLPAIAEKVIELSPHIDPDVKARGHSILDELQRE 452

Query: 355 DERFGKTLDRGLVLLDGVLSHL-------GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           + RF +TL+RG  LLD +L+              L+G   F LYDT G P++I  ++   
Sbjct: 453 ELRFVQTLERGEKLLDQMLAEALLNAQKSETLPCLSGKDVFLLYDTFGFPVEITTEVAEE 512

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +G+  ID+  F   +E QR +++A    +           L E    T+F+GYD L    
Sbjct: 513 QGVK-IDMDGFEVEMENQRRQSQAAHNVVKLAVENG--GDLAENVHDTEFLGYDTL---- 565

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 ++V++++  G+ V +   G +VEV+ ++TPFYAE+GGQ
Sbjct: 566 -------------------SARAVVESLLLNGKSVIQVSEGSEVEVLLNKTPFYAESGGQ 606

Query: 528 LGDTGC------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           +GD G              ++I DVQK    +FVH   +  G+L     +   +D + R+
Sbjct: 607 IGDHGFLYVTQDQSKQTAVVEIKDVQKSLGSVFVHKGTIREGVLEVGREVEAAVDAKLRQ 666

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +  ++H+ATHLL  AL  ++G   SQ GS +  D LRFD    +P+  +EL+ IE+ +N 
Sbjct: 667 RAKVHHTATHLLQSALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLHDSELEEIENLING 726

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I     + T++M+  DA  +GA A+ G KY ++VRVV V        S  LCGGTHVS+
Sbjct: 727 WIGDGTLLQTKVMSLTDAKEAGAIAMFGEKYGEQVRVVEVPG-----VSMELCGGTHVSN 781

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++K L S LKV    V  RV+
Sbjct: 782 TSEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSQMKLLCSTLKVKAEEVTTRVD 841

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS--CHKI------ADVNFMSHIISEVDSKELKSVM 813
            + EE R ++   +  + +  V   S    K         +  +   + + D+  LKS  
Sbjct: 842 NLLEELRTVRNEVSALRAKAAVYKASMIASKAFSVGTSKTIRVLVESMDDFDADALKSAA 901

Query: 814 DALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
           + L   +Q    I+L     E K S++   T  ++D    A       AK+ GGGG GGR
Sbjct: 902 EYLMDTLQDPAAIILGSCPDEGKVSLVAAFTPGVVDIGIQAGKFIGPIAKLCGGGG-GGR 960

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P+ AQ+GG        A+    + L
Sbjct: 961 PNFAQAGGRKPENLTNALEKARTDL 985


>gi|293553477|ref|ZP_06674105.1| alanyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291602354|gb|EFF32578.1| alanyl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 880

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/920 (36%), Positives = 502/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D I  I   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F  +       LP  +IDTGMGLE
Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q+   N++ DLF  +I A E++   +KY       ++++VI DH+R+ SF I D
Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + ++ QR RAR+      S   +     L +    ++FIGY      
Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  IV+   ++ E   G+  +++FDQTPFYAE GG
Sbjct: 471 -----------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   +       +KA      H +  +  +    +  L ID   R ++  
Sbjct: 507 QVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T   + + A   GA AL G KY   VRVV++        S  LCGGTHV++T  I
Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R+LQ  + +   +L  +           I     ++  +   D  +L+ + D  ++K
Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETINGKTIITAQVKVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I++L    +E K S+L  +T++  +    A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      A+     ++ +
Sbjct: 860 GKNPAGIPDALKAAKEWVAQ 879


>gi|239986424|ref|ZP_04707088.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379]
 gi|291443371|ref|ZP_06582761.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|291346318|gb|EFE73222.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 889

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/923 (36%), Positives = 502/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH  +PS+SLI  +DPTL+   +GMVPFK  F G+ KP    V
Sbjct: 1   MESAEIRRRWLSFFEERGHTAVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQLAW+ LT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L+ITVY +D+EA ++W+   G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLDPEKLWITVYLDDDEAEQIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+     +   P        +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG++Y   N   V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGAENGTDVSLRVVADHIRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T  ++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +L+  +  +     ++L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILETAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR +A+A +    +G  +   +  + +  GAT+F GY  L G
Sbjct: 415 EQGLS-VDEDGFRRLMQEQRDKAKADARAKKTGHADLSAYREVADTAGATEFTGYTSLAG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL DTG   +  G  +++ DVQK   G+ VH  +V+ G +     +  +ID   RR ++
Sbjct: 511 GQLADTGRIRLDTGAVIEVRDVQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIAGML 745

Query: 765 EEYRKLQLIHAKRKLQLNV-----EDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    K + +  +        S   +  V  ++  +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLAAAAGLADSAKDVRGVALVTGQVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   ++ L   +  +  +V+            A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N      A+A V   + +
Sbjct: 865 QGGGTNPAAIGDAVAAVERLVSE 887


>gi|257898621|ref|ZP_05678274.1| alanyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|257836533|gb|EEV61607.1| alanyl-tRNA synthetase [Enterococcus faecium Com15]
          Length = 880

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/920 (37%), Positives = 503/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D I  I   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F  +       LP  +IDTGMGLE
Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q+   N++ DLF  +I A E++   +KY       ++++VI DH+R+ SF I D
Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + ++ QR RAR+      S   +     L +    ++FIGY      
Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  IV+   ++ E   G+  +++FDQTPFYAE GG
Sbjct: 471 -----------------------SQLLVIVKGESLLNEIAEGE-AQMIFDQTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   +       +KA      H +  +  +    +  L ID   R ++  
Sbjct: 507 QVADQGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T   + + A   GA AL G KY   VRVV++        S  LCGGTHV++T  I
Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVAAIVKSPQLKEVVSKAEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R+LQ  + +   +L  +           I+    ++  +   D  +L+ + D  ++K
Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETISGKTIIAAQVKVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I++L    +E K S+L  +T++  +    A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      A+     +L +
Sbjct: 860 GKNPAGIPDALKAAKEWLAQ 879


>gi|304436481|ref|ZP_07396455.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370527|gb|EFM24178.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 890

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/912 (36%), Positives = 511/912 (56%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
                +R  +L FF +K GH  LPS SL+P NDPTL+   +GM P K  FTG+ KP    
Sbjct: 19  MTGKELREAYLNFFAEKKGHLRLPSYSLVPENDPTLLLIGAGMAPLKPFFTGKVKPPRHR 78

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + T Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L
Sbjct: 79  IVTCQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIEL 134

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++T+Y  D+EA ++W +  GLS D I+ +   DNFW +   GPCGP SEI+ D G
Sbjct: 135 PKEKLWVTIYPNDDEARQIWLEQPGLSPDHIVPL--EDNFWEIGP-GPCGPDSEIYIDLG 191

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +R++EIWNLVF Q+++    E  +L   +IDTG GLER+A+V+Q
Sbjct: 192 EERGCGSPTCSVGCDCDRFLEIWNLVFTQYDRTEDGEYNLLAHKNIDTGCGLERLASVVQ 251

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I+ +  V+  +Y  +    ++ +VI DH RS   +I DGILP+NEG
Sbjct: 252 NKKTNFETDLLYPVIEYAANVSQTEYGADPQKDISLKVIADHARSVVIMIMDGILPSNEG 311

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS--AYPELIQAKLLIEETLRSE 354
           RGYVLRR +RRA+ + R+LG T+P +   + A+    G    + EL+  +  I   +R E
Sbjct: 312 RGYVLRRTIRRAIRHGRMLGITKPFLDGAVDAVIEIFGDVKDFSELVSKEEYIRRVIRIE 371

Query: 355 DERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF  TL +G+ LL+  +        +IL G+V FKLYDT+G P ++ ++IL   GL  
Sbjct: 372 EERFAATLVQGIDLLNEEIDTLKANAQQILPGEVGFKLYDTYGFPRELTEEILHENGLK- 430

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F Q +E+QR+RAR+                                        D
Sbjct: 431 LDDAGFVQEMEKQRNRARSARA-----------------------------ENQAVAVPD 461

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              L      +      + V AI + G +V+    G+   ++   TPF+AE GGQ+GD G
Sbjct: 462 LSGLDTSALTENAEVREANVVAIWRDGTLVDMLHDGESAGIILSTTPFHAEGGGQVGDAG 521

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + D  R+ I + ++  +G   H A VE G ++   ++ + +D  ++   + NH+ATHL
Sbjct: 522 LLLSDVGRIVIRNTKRLPDGTVYHLAYVEEGQIQRGETVQIQLDEVHKLSSARNHTATHL 581

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  I+G HV Q GS +TP+ LRFD T+ +P+T  +++ IED VN+ I  ++ +   
Sbjct: 582 LQAALQRIVGDHVHQAGSLVTPERLRFDFTNFEPLTQQQVQDIEDLVNEEILSSIDLDIS 641

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M    A   GA AL G KY D VRVV V        S  LCGG+HVS+TG+I L  I+ 
Sbjct: 642 TMPIAVAKERGAMALFGEKYGDIVRVVEVPN-----FSIELCGGSHVSNTGQIGLFKIIG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEAITG+ A  ++   D  +++L+  LKV  G++  +V+++ +E + +Q 
Sbjct: 697 ESGVAAGVRRIEAITGRAAYQYVSETDALIRTLSQRLKVKAGDLPTQVDKLIDEKKNMQE 756

Query: 773 IH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                A  + Q + + L     +I   + +   ++    +EL+++ D   +K+ +GI++L
Sbjct: 757 QLRTYADSRDQADAQKLLSDVQEIGKFHVIVGKVNVYSMEELRNIADLACEKLSAGIVVL 816

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G++   K ++++   +D +    +A ++ + +AK +GGGG GGRP MAQ+GG       
Sbjct: 817 -GMADNDKVNLVVKADQDAVAYGAHAGNIIKAAAKAVGGGG-GGRPDMAQAGGKIPQNLS 874

Query: 887 QAIAGVASFLKK 898
           QA       +++
Sbjct: 875 QAFDDAVLIIRQ 886


>gi|260881197|ref|ZP_05403859.2| alanine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260849786|gb|EEX69793.1| alanine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 871

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/911 (36%), Positives = 512/911 (56%), Gaps = 59/911 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            + + +R  +L+FF +K GH  LPS SLIP +DPTL+   +GM P K  FTG+ KP    
Sbjct: 1   MSGNELREAYLQFFSEKKGHLRLPSFSLIPQDDPTLLLIGAGMAPLKPFFTGKMKPPRTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK  AI  AW+ LT+  +L
Sbjct: 61  VTTSQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKGEAIPWAWEFLTEVIEL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TVY +D EA ++WK   G   D I+++   DNFW +   GPCGP SEI+ D G
Sbjct: 117 PKDKLWVTVYPDDTEAIEIWKSQPGFPQDHIVKM--EDNFWEIGP-GPCGPDSEIYIDLG 173

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +RY+EIWNLVF Q+++Q       L   +IDTG GLER+A+V+Q
Sbjct: 174 EERGCGSPTCAVGCDCDRYLEIWNLVFTQYDRQEDGSYKNLAHKNIDTGCGLERLASVVQ 233

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I+ + +V G++Y  +    ++ +VI DH RS + +I DGILP+NEG
Sbjct: 234 NKKTNFETDLLYPIIEYAAKVAGVEYGKDEKTDISLKVIADHARSMAVMIMDGILPSNEG 293

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRRI+RRA+ + R+LG     +   + A+      A  + ELI     I++ +  E
Sbjct: 294 RGYVLRRILRRAIRHGRMLGIKGKFLEGAVDAVVEIYRDASDFGELIAKHDYIKKVISIE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++RF  TL++G+ LLD  +  L  D    L G+V F+LYDT G P ++ ++IL   GL  
Sbjct: 354 EDRFAATLNQGMELLDAEIKSLKADGKDELPGEVGFRLYDTFGFPWELTEEILHENGL-D 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F++A++EQR RAR+                                   +    D
Sbjct: 413 LDKEGFDKAMDEQRERARSARA-----------------------------ENQRVAVPD 443

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +             + V AI + G++V+E   G++  ++ D+TPFYAE GGQ+GD G
Sbjct: 444 LSGIDVSKLKVDPEAKEAKVVAIWKDGKLVDEITDGEEAGIILDKTPFYAEGGGQVGDEG 503

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G+  R++ T+ +K  +G   H + VE G L+   ++ + +D + +   + NH+ATHL
Sbjct: 504 LLLGEFGRIKATNAKKLPDGTVYHVSYVEEGQLKVGETVKIEVDQEKKLASARNHTATHL 563

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G  V+Q GS +TPD LRFD T+ +P+T+ +L  +E  VN +I +   V   
Sbjct: 564 LQAALKKVVGDQVNQAGSSVTPDRLRFDFTNFEPVTAQQLADVEALVNKVILKGQDVEIS 623

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ ++A  +GA AL   KY D VRVV V        S  LC G+HV + G+I +  IV 
Sbjct: 624 HMSLDEAKKAGAMALFSEKYGDVVRVVRVPG-----FSMELCAGSHVKNVGQIGMFKIVG 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E+ I +G+RRIEAITG+ A  +   +   L+  A+ LK ++ +V   VE++  E +++  
Sbjct: 679 ETGIASGVRRIEAITGKAALDYANEKLATLQKAAALLKANEDDVPAAVEKLQAEGKEMAG 738

Query: 771 ---QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              ++   + K            I  V+ ++   +  +   L+ V D    K+ SG+++L
Sbjct: 739 KLAEVAAMQEKADAQQLIAGVKDINGVSVITGKANVENMDSLRDVADLTLDKLGSGVVVL 798

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G + + K ++++  ++D + R  +A  + + +A V+GGGG GGRP MAQ+GG       
Sbjct: 799 -GCANDGKVNLVVKASKDAVKRGIHAGKIIKEAAAVVGGGG-GGRPDMAQAGGKKAEALP 856

Query: 887 QAIAGVASFLK 897
           QA    A+ ++
Sbjct: 857 QAFEKAAAVIE 867


>gi|325844825|ref|ZP_08168277.1| alanine--tRNA ligase [Turicibacter sp. HGF1]
 gi|325489012|gb|EGC91400.1| alanine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 873

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/912 (36%), Positives = 511/912 (56%), Gaps = 61/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L FF+  GH + P + L+P NDP+L++ NSG+   K  F G+E P    +
Sbjct: 4   MTGSEIRSMYLNFFKSKGHMIEPGAPLVPINDPSLLWINSGVAALKKYFDGREIPNNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E A+   W+LLT  + F 
Sbjct: 64  TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAVTWGWELLTSKEWFG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D+  LY+TVY  D+E + LW K+ G+S D I+++    NFW + E GPCGP +EIF+D+
Sbjct: 120 FDKELLYVTVYPTDQETYDLWIKL-GVSPDHIVKLEY--NFWEIGE-GPCGPNTEIFYDR 175

Query: 180 G-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231
           G     E I   L     E +RYIEIWN+VF Q+  +      E  +LP  +IDTGMGLE
Sbjct: 176 GTKYDPENIGIRLLEEDIENDRYIEIWNIVFSQYNSKEGLDRSEYPMLPNKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A V+Q    N+D DLF  +I+A+E+++G+KY        +VI DH+R+ +F +ADG L
Sbjct: 236 RVACVIQGVETNFDTDLFMPIIRATEEMSGVKYTQETATAFKVIADHVRTVTFAVADGAL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
            +NEGRGYVLRR++RRA+ Y + LG     M  L+P +   M   YP +     L+++ +
Sbjct: 296 LSNEGRGYVLRRLLRRAVRYGKKLGIDRAFMYELVPVVADIMKDYYPYVCDKIELVQKVI 355

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE++RF +TL  G  +L  +++    D+ ++G  AF LYDT+G P ++  +     G  
Sbjct: 356 KSEEDRFRQTLADGEKILTDLIAKCE-DKTISGKDAFMLYDTYGFPYELTLEYAEEAGFT 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+  +E QR RAR     + S  ++    +L      ++F+GY  L        
Sbjct: 415 -VDKEGFDAQMEAQRERARNAREDVESMHSQNA--ALMSFKTPSKFVGYHQL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            +S V  ++Q GE+V+        +V+ D TPFYAE+GGQ+ DT
Sbjct: 464 ---------------STTSNVILLLQNGEVVDSLTG--AGQVILDTTPFYAESGGQVADT 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G        + +TDV K   G  + H++   G L     +V  +  +NR  L+ NH+ATH
Sbjct: 507 GMMTTSAANVMVTDVIKAPNGQHL-HSVQVDGTLSLNDEVVCQVQVENRLDLTKNHTATH 565

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ++G+H +Q GS ++ D LRFD T+ + +TS EL+ IE  VN+ I  ++PV  
Sbjct: 566 LLHQALKDVIGAHANQAGSLVSADRLRFDFTNMQGLTSEELQRIEAIVNEKIWASIPVEV 625

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E+A   GA AL   KY + VRVV       G +S  LCGG HVS+T EI L  I+
Sbjct: 626 FEKSIEEAKQMGAMALFSEKYGETVRVVK-----AGDYSIELCGGCHVSNTSEIGLFKII 680

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A  ++    E+  +++  LK     +  RVE I +E ++  
Sbjct: 681 SESGIGAGTRRIEAVTGKGAYQYMNSFIERFAAVSETLKTKPALLEERVEGILDELKEAH 740

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   K +L+   +        ++A +  ++  + +VD   L+ ++D  ++++ S +I+
Sbjct: 741 RENDSLKSKLSHLKMKEIVNNTREVAGITVLTANLVDVDMNHLRQMVDEFKQQLSSAVIV 800

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L     + K ++   VT D +    +A  + +  A + GGGG GGRP MAQ+G  +  K 
Sbjct: 801 LASAV-DGKVAISCGVTPDYVKQGVHAGKIVKEVATICGGGG-GGRPDMAQAGAKDATKI 858

Query: 886 DQAIAGVASFLK 897
           ++A+  V  +LK
Sbjct: 859 EEALKNVDEWLK 870


>gi|154174082|ref|YP_001408546.1| alanyl-tRNA synthetase [Campylobacter curvus 525.92]
 gi|205830012|sp|A7GZA4|SYA_CAMC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|112803074|gb|EAU00418.1| alanyl-tRNA synthetase [Campylobacter curvus 525.92]
          Length = 852

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/901 (39%), Positives = 520/901 (57%), Gaps = 57/901 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M N+  +R  +L FF+  GHE+ PS+ L+P ND TL+FTN+GMVPFK+IFTG+       
Sbjct: 1   MQNL-DVREAYLNFFKSKGHEITPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPP 58

Query: 61  V-TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           + T+ Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   
Sbjct: 59  IRTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAIAYAWEFVTQVLK 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY+TV++ D+EAF+LW +   ++ D+I R   +DNFW M +TGPCGPCSEIF+DQ
Sbjct: 119 LPVDRLYVTVHESDDEAFELWAR--HIARDRIYRFGDHDNFWQMGDTGPCGPCSEIFYDQ 176

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G E           +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  +++
Sbjct: 177 GGEHFNTPEDYMGGDGDRFLEIWNLVFMQYERSADGKLSPLPKPSIDTGMGLERVTAIME 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K +NYD  LF  LI    ++ G  Y  ++  ++RVI DH+RS +FL+A G     EGRG
Sbjct: 237 GKFSNYDSSLFMPLIDEVAKLCGKPYSYDSGASYRVISDHIRSVTFLLAQGTTFDKEGRG 296

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +  LLG  EP M  L+  +C  MG  Y  L + K  ++E +R E+ERF
Sbjct: 297 YVLRRILRRAIRHGYLLGIKEPFMYKLVDKVCEMMGGHYTYLNEKKAAVKEQVRLEEERF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             T+  GL L +  L+     EI +G+ AFKLYDT+G PLD+  D+L  +GL  +D   F
Sbjct: 357 LATIASGLELFNEELAKT--KEIFSGETAFKLYDTYGFPLDLTADMLREKGLK-VDEAKF 413

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++ + EQ++RA+A   G G  +++  +  L E++G  +F GYD L               
Sbjct: 414 DELMSEQKARAKAAWKGSGDKSSKGDFKQLLEEFGENKFSGYDELER------------- 460

Query: 479 KPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      S + A++    + V+   +G+   V+FD TPFYA++GGQ GDTG   G 
Sbjct: 461 ----------QSKILALLDNDFKRVQNLRAGESGWVMFDVTPFYAQSGGQTGDTGEITGV 510

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G  L             ++ + VE G       ++       R +++ +HSATHLLH AL
Sbjct: 511 GKVLDTQKFHG------LNLSQVEVGKQIKTGDVLNLKVSDARAEIARHHSATHLLHAAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG+HV+Q GS +  D LRFD +H K +TS EL+ IE  VND +A +    T IM+ E
Sbjct: 565 RKILGTHVAQAGSNVEADRLRFDFSHPKALTSEELEMIEKFVNDAVASSAAAKTEIMDIE 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A  SGA AL G KY + VRV+S+     G  S  LCGGTHV +  EI   +I  ES + 
Sbjct: 625 AAKNSGAIALFGEKYAENVRVLSL-----GNVSKELCGGTHVKNVSEIGAFFITKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+  + A +   G   +L  +++ LK ++  V   ++++  E R+L+    K 
Sbjct: 680 AGVRRIEAVCSRAALNLARGFRSELAEISNELKTNEPMVA--IKKLKGEVRELK---DKL 734

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           K   +   ++   I D      ++    S ++K+++D  + +  S  I+L+ +  + K +
Sbjct: 735 KNIGDSHAIAFTSINDTKMGVAVVK---SGDIKTMIDNYKNEFASLAILLLQV-NDDKIA 790

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +   V         A +  +++AK+L  G GGGR   A +GG N    + A+     F K
Sbjct: 791 IAAGVKNAP---IKAGEWVKMAAKIL-DGNGGGRDDFATAGGKNVPMIETAVKEAFEFAK 846

Query: 898 K 898
           +
Sbjct: 847 E 847


>gi|150021161|ref|YP_001306515.1| alanyl-tRNA synthetase [Thermosipho melanesiensis BI429]
 gi|205830274|sp|A6LMH9|SYA_THEM4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149793682|gb|ABR31130.1| alanyl-tRNA synthetase [Thermosipho melanesiensis BI429]
          Length = 859

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/906 (37%), Positives = 538/906 (59%), Gaps = 57/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FLEFF+K GH++LPS+SLIP +DP LMFT +GMVPFK IF G+  PVY  V
Sbjct: 1   MLSEEIRQLFLEFFEKKGHKILPSASLIP-DDPQLMFTVAGMVPFKPIFWGKVDPVYPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D++NVGRT RHHTFFEMLGNFSFG YFK  AI+ AW+ +T+   + 
Sbjct: 60  TTCQKCIRT----TDIENVGRTPRHHTFFEMLGNFSFGDYFKREAIEWAWEFVTQVLKIP 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + RL+I+VY+EDEEA+ +W+K  G+S++KI+++   DNFW     TGPCGP +EIF+D G
Sbjct: 116 EERLWISVYEEDEEAYDIWRK-IGVSSNKIVKLGKEDNFWGPAGPTGPCGPDTEIFYDTG 174

Query: 181 ECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           + +    G  P       R++EIWNLVF ++ Q    +   L + +IDTG GLER+A ++
Sbjct: 175 KEVPITDGKEPNPGNTEGRFVEIWNLVFTEYYQDENGQLLPLKRKNIDTGAGLERIAAMM 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    N+D DLF  +I     V  ++Y  +  + V+ RVI DH+R+  FLI+DG+ P+NE
Sbjct: 235 QGVYYNFDTDLFLPIINRITDVLNVEYGRDEKHDVSIRVIADHIRALVFLISDGVFPSNE 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA  + ++LG  +P + +++ A+  +MG  YPE+++ +  ++E +  E+
Sbjct: 295 GRGYILRRILRRAARHGKMLGSEKPFLHNIVDAVVEKMGKIYPEIVEKQSFVKEIIYGEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF + L++GL ++D ++   G    ++G+ AFKLYDT+G PLDI++D+    G   +D 
Sbjct: 355 ERFLQNLNKGLDIVDKIVKETGGK--IDGEAAFKLYDTYGFPLDILRDLANENGYI-LDE 411

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +E+QR +AR    G    +    + +L     +T+F+GYD+L            
Sbjct: 412 EGFNKYMEQQRKKAREA-AGEVEFSERTDYETL---DISTKFVGYDVL------------ 455

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        ++ V  I  + + V+E    +  E++ D+TPFY E GGQ+ D G   
Sbjct: 456 -----------STNARVLKIRTE-KFVDEVKDVE-CELILDETPFYPEKGGQVADKGVIK 502

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G      +T+V    EGI V H    +G +R   ++  ++D + R+  + NH+ATHLLH 
Sbjct: 503 GKNGEFVVTNVYVPVEGIIV-HKGKLKGKIRVGDAIFASVDEKKRKATARNHTATHLLHA 561

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS + P+ LRFD TH   +T  E++ IE  VN+ I + + V T++M+
Sbjct: 562 ALRKVLGTHVRQAGSLVAPERLRFDFTHYAALTKEEIEKIEKMVNEKILEAIDVNTKVMS 621

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++AI +GA AL   KY D+VRVV +        S  LCGGTHV +TGEI L  I+SESS
Sbjct: 622 YDEAIKNGAMALFEEKYGDKVRVVRIR-----DFSEELCGGTHVKNTGEIGLFKIISESS 676

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEAITG  + ++L   +   K +   L  +  NV  ++E++ E  ++L+L   
Sbjct: 677 VSAGVRRIEAITGFASLTYLENLETNWKKIKEELDATDENVFVKIEKLKEGIKQLELKIK 736

Query: 776 KRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +  +       + +    ++ ++ +    V+   L+ + D L  +    ++      +
Sbjct: 737 EIQKNMINIKQILNNVQIENEIKYLVYEFEGVEQNTLRDLADKLIDRGVDLVVFF--NKQ 794

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             K  +++   +   ++ +A ++A+  +K+L  GGGGGRP  AQ+GG + +K ++A + +
Sbjct: 795 GDKVILIVKR-KKTFEKLHAGNIAKSLSKIL-DGGGGGRPDFAQAGGKDVSKINEAKSKL 852

Query: 893 ASFLKK 898
              L++
Sbjct: 853 IEILRE 858


>gi|194333146|ref|YP_002015006.1| alanyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|194310964|gb|ACF45359.1| alanyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 885

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/922 (36%), Positives = 496/922 (53%), Gaps = 67/922 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR +FL++F   GH+++ S+ +IP  DPTL+FTN+GM  FK++F  +    Y   
Sbjct: 1   MNSRDIRQSFLDYFSAKGHKIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLDKGSRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L 
Sbjct: 61  VDTQKCMRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIAWAWELLTDVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +DEE+F +W++ + +  D I++    DNFW M ETGPCGPCSEI  D  +
Sbjct: 121 KDRLYATVYKDDEESFLIWQQETDIDPDHIMKFGDKDNFWEMGETGPCGPCSEIHIDLTD 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G P  +    R IE+WNLVF+Q+ +        LPK  +DTGMG ER+  VLQ K 
Sbjct: 181 D-SSGAPLVNAGDYRVIELWNLVFIQYNRMADGSLDPLPKKHVDTGMGFERVTAVLQGKR 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F  L +A  +VTG+ Y         +  RVI DH R+ +F I DG +P NEGR
Sbjct: 240 SNYDTDIFYPLFEAITEVTGVTYNASLDGEQDIAMRVIADHARALTFAITDGAMPGNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ YAR L   EP++  L+  +   MG  +PEL Q +  +++ ++SE+E 
Sbjct: 300 GYVLRRILRRALRYARKLDSREPMIYKLVGVIARTMGDVFPELQQQQETVQKIVKSEEES 359

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ +   +         + + G+ AF+LYDT+G P+D+ + +    GL  ID 
Sbjct: 360 FLSTLDRGMEIFGDITKAVKADNGKEIKGEDAFRLYDTYGFPIDLTRLMAAEVGL-DIDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+  ++EQ++RAR          +E   +   E    T F+GY+ L     +   + V
Sbjct: 419 KGFDVCMQEQKTRARMDRKEKQLAASETGEWLWLETPSPTVFVGYETLESDARIVGVKVV 478

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                           G ++++V D+TPFYAE+GGQ GD G   
Sbjct: 479 --------------------------------GDQLQLVLDRTPFYAESGGQTGDRGVIE 506

Query: 536 GDGIRLQITDVQKKAEGIFV-------HHAIVERGILRTEMS----LVLTIDYQNRRQLS 584
            +G  +++ D QK  +            H   +      + S    + +++D Q+R    
Sbjct: 507 AEGYSVEVVDTQKDGDMTVHIAATVQDRHTGEQIDPAAIDFSASVAVQVSVDRQSRLATE 566

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS + PD LRFD +H + +++ EL+ +E  VN+ I 
Sbjct: 567 RNHTATHLLHAALRKVLGKHVQQKGSLVGPDRLRFDFSHFEKVSARELQLVEAEVNERIR 626

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +   +V    +  E+A+  GA A  G KY D VRVV V        S  LCGGTHVS+ G
Sbjct: 627 EAGELVKHADIPYEEALEKGALAFFGDKYADLVRVVEVPG-----VSIELCGGTHVSNVG 681

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762
            I L  IVSESS+ AGIRRIEA+TG+ A   L  + ++L+ +   LK      V  +V+ 
Sbjct: 682 RIGLFKIVSESSVAAGIRRIEALTGKAAEELLWNEYQELQQIRQLLKAHPDEGVAVKVQA 741

Query: 763 IWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE + L       +L     +   +  S  +I      +  + +  + +LKS+   L 
Sbjct: 742 LLEEKKTLGKQVQDMQLSVLLDKALQQLDSSEEINGCRIFTMHVPDAGADDLKSLGQYLH 801

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875
            +I  G  +L   S E K S++       +     NA DL + +A+ + GGG GG+P  A
Sbjct: 802 DRIGCGAGLLASES-EGKVSLVAFAGPQAVRQCGVNAGDLVKKAAQEVQGGG-GGKPGFA 859

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
            +GG N     +A     + L+
Sbjct: 860 TAGGRNPAGLTKAFETFTAALQ 881


>gi|293374254|ref|ZP_06620582.1| alanine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|292647087|gb|EFF65069.1| alanine--tRNA ligase [Turicibacter sanguinis PC909]
          Length = 873

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/912 (36%), Positives = 511/912 (56%), Gaps = 61/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L FF+  GH + P + L+P NDP+L++ NSG+   K  F G+E P    +
Sbjct: 4   MTGSEIRSMYLNFFKSKGHMIEPGAPLVPINDPSLLWINSGVAALKKYFDGREIPNNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E A+   W+LLT  + F 
Sbjct: 64  TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAVTWGWELLTSKEWFG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D+  LY+TVY  D+E + LW K+ G+S D I+++    NFW + E GPCGP +EIF+D+
Sbjct: 120 FDKELLYVTVYPTDQETYDLWIKL-GVSPDHIVKLEY--NFWEIGE-GPCGPNTEIFYDR 175

Query: 180 G-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231
           G     E I   L     E +RYIEIWN+VF Q+  +      E  +LP  +IDTGMGLE
Sbjct: 176 GTKYDPENIGIRLLEEDIENDRYIEIWNIVFSQYNSKEGLDRSEYPMLPNKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q    N+D DLF  +I+A+E+++G+KY        +VI DH+R+ +F +ADG L
Sbjct: 236 RMACVIQGVETNFDTDLFMPIIRATEEMSGVKYTQETATAFKVIADHVRTVTFAVADGAL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
            +NEGRGYVLRR++RRA+ Y + LG     M  L+P +   M   YP +     L+++ +
Sbjct: 296 LSNEGRGYVLRRLLRRAVRYGKKLGIDRAFMYELVPVVADIMKDYYPYVCDKIELVQKVI 355

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE++RF +TL  G  +L  +++    D+ ++G  AF LYDT+G P ++  +     G  
Sbjct: 356 KSEEDRFRQTLADGEKILTDLIAKCE-DKTISGKDAFMLYDTYGFPYELTLEYAEEAGFT 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+  +E QR RAR     + S  ++    +L      ++F+GY  L        
Sbjct: 415 -VDKEGFDAQMEVQRERARNAREDVESMHSQNA--ALMSFKTPSKFVGYHQL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            +S V  ++Q GE+V+        +V+ D TPFYAE+GGQ+ DT
Sbjct: 464 ---------------STTSNVILLLQNGEVVDSLTG--AGQVILDTTPFYAESGGQVADT 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G        + +TDV K   G  + H++   G L     +V  +  +NR  L+ NH+ATH
Sbjct: 507 GMMTTSAANVMVTDVIKAPNGQHL-HSVQVDGTLSLNDEVVCQVQVENRLDLTKNHTATH 565

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ++G+H +Q GS ++ D LRFD T+ + +TS EL+ IE  VN+ I  ++PV  
Sbjct: 566 LLHQALKDVIGAHANQAGSLVSADRLRFDFTNMQGLTSEELQRIEAIVNEKIWASIPVEV 625

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E+A   GA AL   KY + VRVV       G +S  LCGG HVS+T EI L  I+
Sbjct: 626 FEKSIEEAKQMGAMALFSEKYGETVRVVK-----AGDYSIELCGGCHVSNTSEIGLFKII 680

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A  ++    E+  +++  LK     +  RVE I +E ++  
Sbjct: 681 SESGIGAGTRRIEAVTGKGAYQYMNSFIERFAAVSETLKTKPALLEERVEGILDELKEAH 740

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   K +L+   +        ++A +  ++  + +VD   L+ ++D  ++++ S +I+
Sbjct: 741 RENDSLKSKLSHLKMKEIVNNTREVAGITVLTANLVDVDMNHLRQMVDEFKQQLSSAVIV 800

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L     + K ++   VT D +    +A  + +  A + GGGG GGRP MAQ+G  +  K 
Sbjct: 801 LASAV-DGKVAISCGVTPDYVKQGVHAGKIVKEVATICGGGG-GGRPDMAQAGAKDATKI 858

Query: 886 DQAIAGVASFLK 897
           ++A+  V  +LK
Sbjct: 859 EEALKNVDEWLK 870


>gi|157412393|ref|YP_001483259.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|205830179|sp|A8G242|SYA_PROM2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157386968|gb|ABV49673.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 886

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/908 (34%), Positives = 507/908 (55%), Gaps = 52/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+ +  H+++PS+SL+P +DPT+M T +GM+PFK +F G ++   +  T
Sbjct: 11  TGDEIRNAFLKFYSEKFHKIIPSASLVP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+TK + L  
Sbjct: 70  SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTKIYKLSS 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++++ EDEE+ K+W +  G++ D+I+++   DNFWS  +TGPCGPCSE+++D    
Sbjct: 126 ENIIVSIFHEDEESEKIWIEEIGINPDRIVKLGEKDNFWSSGKTGPCGPCSELYYDFNPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ  + +  +   L   +IDTGMGLERMA +LQ+K+N
Sbjct: 186 -KGLKYVDLEDGDRFIEFYNLVFMQHNRDSNGKLTDLKFKNIDTGMGLERMAQILQKKSN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ + +++ + Y  ++     + +++ DH R+   LI+DG+  +N GRGY
Sbjct: 245 NYETDLIFPIIQKASKISSINYFSSDERTKISFKILGDHTRAVIHLISDGVSASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +  +  +       M + YP+L     LI   ++ E+ RF 
Sbjct: 305 ILRRLLRRMVRHGRLLGIKKEFLSDIASVGIKLMENNYPDLKNNNELILSEIKIEEVRFR 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LLD ++S     ++++G  AF+LYDT+G PL++ ++I     +  +DI  F 
Sbjct: 365 ETLERGEKLLDEIISS--GQKLISGFKAFELYDTYGFPLELTEEIAGENNIK-VDIEGFQ 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + ++ Q+ RA+A S  +       +   + + +  T F G D L                
Sbjct: 422 REMDAQKERAKAASSNIDLTLEGSLEREI-DLFNKTIFNGEDCLDS-------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + ++ I     +V++A  GQ+V++V DQT FY E+GGQ+GD G       
Sbjct: 467 ---------EAKIQGIFLDSNLVKKASEGQRVQIVLDQTSFYGESGGQVGDNGIICSTDA 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D   + + +F+H  IV+ GI     ++   ++   R + S NH+ATHLL  AL  
Sbjct: 518 EILV-DKVVRKKNVFLHDGIVKNGIFTVGQTIKTVVNPAKRVRASANHTATHLLQSALKE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++  +VSQ GS +  + LRFD   SKP++  +++ +E  VN  I QN P+V + M + +A
Sbjct: 577 VVNKNVSQKGSLVAFNKLRFDFNASKPVSEDQIRKVESLVNSWIIQNHPLVIKNMPKREA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A+ G KY D VRVV V        S  LCGGTHV +T E+    I+SE  I AG
Sbjct: 637 LEKGALAMFGEKYGDEVRVVDVPG-----VSMELCGGTHVKNTSELGCFKIISEEGISAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E         K K 
Sbjct: 692 VRRIEALSGQSAFDYFSERNFLVNKLSDLLKANPSQLFDRVNNLQSELINKNKEIQKMKD 751

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG---IS 831
           ++          S   +   + + + I  +D   L+S    L  ++ +  ++++G     
Sbjct: 752 EIAYFKYSSLHSSAEIVNSFSILVNQIDGLDGDSLQSAALNLTSQLGNKSLVILGGIPNP 811

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + +K   ++ + ++ +    +A  L    A++  GG GGG+P+ AQ+G  + +K D A+ 
Sbjct: 812 ENRKLLFVVSLGDEAVKIGLHAGKLINEIARICAGG-GGGKPNFAQAGARDIDKLDFALD 870

Query: 891 GVASFLKK 898
              + L+K
Sbjct: 871 YAKNHLQK 878


>gi|154497721|ref|ZP_02036099.1| hypothetical protein BACCAP_01697 [Bacteroides capillosus ATCC
           29799]
 gi|150273219|gb|EDN00364.1| hypothetical protein BACCAP_01697 [Bacteroides capillosus ATCC
           29799]
          Length = 890

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/915 (36%), Positives = 505/915 (55%), Gaps = 56/915 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+++P    VTT
Sbjct: 8   LNELREMFLKFFETKGHLRLPSFSLIPQNDASLLLINSGMAPMKPFFTGEQEPPCHRVTT 67

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKC+R G    D++N+G T RH T+FEMLGNFSFG YFK+ AI  AW+ LT  +   LD
Sbjct: 68  CQKCIRTG----DIENIGHTARHGTYFEMLGNFSFGDYFKKEAIHWAWEFLTSPEWVGLD 123

Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             RLY +V+        D+EAF++W +  G+ A++I +    DNFW    +GPCGPCSEI
Sbjct: 124 PERLYPSVFAGNETTPADDEAFRIWHEEIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEI 182

Query: 176 FFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           ++D+GE    G PG     + +RYIE+WN+VF QF    +     L + +IDTGMGLER+
Sbjct: 183 YYDRGERWGCGKPGCTVGCDCDRYIEVWNVVFSQFNNDGENHYTELKQKNIDTGMGLERL 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291
           A V Q+  + +D+D   ++     ++T   Y       V+ RVI DH+RS++F+I DG+L
Sbjct: 243 ACVCQDVASLFDVDTVMNITNKVSEITHAHYGETAAKDVSLRVITDHIRSATFMICDGVL 302

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA  + +LLG  EP +  +   +  E    YPEL + +  I + +
Sbjct: 303 PSNEGRGYVLRRLLRRAARHGKLLGVNEPFLYEVCDTVIHENEGHYPELRERQDYITKVI 362

Query: 352 RSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           R+E+E F +T+D GL + + +LS      +++ +G  AFKLYDT+G P+D+  +++  +G
Sbjct: 363 RTEEENFARTIDGGLKIFNDMLSGHKEKGEKVFSGADAFKLYDTYGFPIDLTIEMVQEQG 422

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F   +EEQ+ RAR     LG      +     +    TQF+GYD        
Sbjct: 423 MT-VDQEGFKVLMEEQKVRARKAREALGDLGWAGV--EFGKDVPETQFVGYDHTSIDD-- 477

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V A+V + E  EE + G +  VV D+TPFYAE GGQ+ 
Sbjct: 478 --------------------AKVVALVVENEQAEELMPGVEAIVVLDKTPFYAEMGGQVA 517

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G       + Q+TDVQK   G ++H   +  G+++   ++  +ID + R+ +   HSA
Sbjct: 518 DHGVITMGDAQFQVTDVQKNKGGKYMHTGKLTGGVIKLGDTVSASIDVKRRKAIMRAHSA 577

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL T+LG HV Q GS +  D LRFD TH   +T+ EL  +   VN+ + +   V
Sbjct: 578 THLLDKALRTVLGDHVQQAGSLVEEDRLRFDFTHFSAMTAEELSQVSAMVNEAVLEGYDV 637

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T ++  E+A   GA AL G KY D VRVV +       +S   CGGTH+ +T ++ + +
Sbjct: 638 HTDVLPIEEAKKKGAIALFGEKYGDTVRVVDMGE----GYSVEFCGGTHLDNTAKVGVFH 693

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE S+ +G+RRIEA TG ++   +    +KL   A+ LK     +  + E+   E R+
Sbjct: 694 IESEFSVASGVRRIEATTGAQSLKIMNQNQQKLFEAAAVLKAKPSELREKAEQTIAELRE 753

Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+ +  K K +    +        H + D+  ++  +   D+ +L+ + D L+ K  + +
Sbjct: 754 LRHMVEKFKAKEAAGETERFLMGGHTVGDLKVLTATLPNADAAKLRQMGDMLRDKQPN-V 812

Query: 825 IMLVGISKEKKASV-LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           + ++    + K +  ++   E +     A D+ +    +  GG GGG+P  A  GG +  
Sbjct: 813 VAVLSAVNDGKITFQVVCGKEAVAKGIKAGDIIKNVTAIC-GGKGGGKPDSAMGGGFDVL 871

Query: 884 KADQAIAGVASFLKK 898
           K D A+A V   + +
Sbjct: 872 KLDDALAKVDDLVAE 886


>gi|124024525|ref|YP_001018832.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|123964811|gb|ABM79567.1| Alanyl-tRNA synthetase:DHHA1 domain [Prochlorococcus marinus str.
           MIT 9303]
          Length = 930

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/913 (36%), Positives = 504/913 (55%), Gaps = 56/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IRT FL FF +  H+++PS+SL+P  DPT++ T +GM+PFK +F GQ +      T
Sbjct: 54  TGSEIRTAFLTFFAERAHQVIPSASLVPE-DPTVLLTIAGMLPFKPVFMGQAERPAPRAT 112

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F L+ 
Sbjct: 113 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLNP 168

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 169 KNLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPD 228

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R++E +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   N
Sbjct: 229 L-GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPN 287

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ D+   LI+ +  + G+ Y+  +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 288 NYETDIIYPLIETAAGLAGLDYQKLDDKGKTSFKVIGDHCRAITHLICDGVTASNLGRGY 347

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           ++RR++RR + + RL+G  +P +  +  A    M  AYP+L + + LI   L  E+ RF 
Sbjct: 348 IMRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFL 407

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  +L  VL  +   ++++G  AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 408 ETLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFE 464

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+++QR RA+A ++ +   T +     +  +  AT+F GY +L                
Sbjct: 465 QAMDQQRQRAKAAAVSIDL-TLQGAIEQMAAELEATRFKGYQVLEQPCC----------- 512

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537
                       V A+V  GE  E A +G  V++V D TPFY E+GGQ+GD G   G+  
Sbjct: 513 ------------VLALVVNGESAERASAGDNVQIVLDTTPFYGESGGQVGDHGVLSGEGS 560

Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +   D   +   +FVH   +ERG L     +   +D   RR+   NH+ATHLL  
Sbjct: 561 GGNGVIVAVDDVSRHRNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHLLQA 620

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++ S + Q GS +  D LRFD   S+ +T+ EL+ IE  +N  I ++  ++   M+
Sbjct: 621 ALKQVVDSGIGQAGSLVDFDRLRFDFHCSRAVTAKELEQIEALINGWIMESHDLIVEEMS 680

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV+ESS
Sbjct: 681 IQEAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESS 735

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G    ++L  +D  +K L    K     ++ RV  + EE +  Q    
Sbjct: 736 VAAGIRRIEAVAGPAVLAYLNERDVVVKELGDRFKAQPSEIIERVISLQEELKSSQKALT 795

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L V   +        + +   +   +  V+   L++    L  ++     +++G 
Sbjct: 796 AARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQGLLDQLGDATAVVLGG 855

Query: 831 ----SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               S E K  ++    + ++     A       AK  GGGG GGRP++AQ+GG +G   
Sbjct: 856 LPDPSDEGKVILVAAFGKQVIAQGQQAGKFIGSIAKRCGGGG-GGRPNLAQAGGRDGAAL 914

Query: 886 DQAIAGVASFLKK 898
           D A+      LK+
Sbjct: 915 DGALEAAKVELKQ 927


>gi|205830259|sp|A2CDK7|SYA_PROM3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 892

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/913 (36%), Positives = 504/913 (55%), Gaps = 56/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IRT FL FF +  H+++PS+SL+P  DPT++ T +GM+PFK +F GQ +      T
Sbjct: 16  TGSEIRTAFLTFFAERAHQVIPSASLVPE-DPTVLLTIAGMLPFKPVFMGQAERPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F L+ 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLNP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KNLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPD 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R++E +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   N
Sbjct: 191 L-GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ D+   LI+ +  + G+ Y+  +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDIIYPLIETAAGLAGLDYQKLDDKGKTSFKVIGDHCRAITHLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           ++RR++RR + + RL+G  +P +  +  A    M  AYP+L + + LI   L  E+ RF 
Sbjct: 310 IMRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  +L  VL  +   ++++G  AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 370 ETLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+++QR RA+A ++ +   T +     +  +  AT+F GY +L                
Sbjct: 427 QAMDQQRQRAKAAAVSIDL-TLQGAIEQMAAELEATRFKGYQVLEQPCC----------- 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537
                       V A+V  GE  E A +G  V++V D TPFY E+GGQ+GD G   G+  
Sbjct: 475 ------------VLALVVNGESAERASAGDNVQIVLDTTPFYGESGGQVGDHGVLSGEGS 522

Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +   D   +   +FVH   +ERG L     +   +D   RR+   NH+ATHLL  
Sbjct: 523 GGNGVIVAVDDVSRHRNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHLLQA 582

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++ S + Q GS +  D LRFD   S+ +T+ EL+ IE  +N  I ++  ++   M+
Sbjct: 583 ALKQVVDSGIGQAGSLVDFDRLRFDFHCSRAVTAKELEQIEALINGWIMESHDLIVEEMS 642

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV+ESS
Sbjct: 643 IQEAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESS 697

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G    ++L  +D  +K L    K     ++ RV  + EE +  Q    
Sbjct: 698 VAAGIRRIEAVAGPAVLAYLNERDVVVKELGDRFKAQPSEIIERVISLQEELKSSQKALT 757

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L V   +        + +   +   +  V+   L++    L  ++     +++G 
Sbjct: 758 AARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQGLLDQLGDATAVVLGG 817

Query: 831 ----SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               S E K  ++    + ++     A       AK  GGGG GGRP++AQ+GG +G   
Sbjct: 818 LPDPSDEGKVILVAAFGKQVIAQGQQAGKFIGSIAKRCGGGG-GGRPNLAQAGGRDGAAL 876

Query: 886 DQAIAGVASFLKK 898
           D A+      LK+
Sbjct: 877 DGALEAAKVELKQ 889


>gi|320109036|ref|YP_004184626.1| alanyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319927557|gb|ADV84632.1| alanyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 889

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/913 (37%), Positives = 496/913 (54%), Gaps = 72/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL FF+   H  + SSSL+P NDPTL+FTN+GM  FK++F G EK  Y    
Sbjct: 5   SGSQIREDFLRFFETKEHRRVHSSSLVPHNDPTLLFTNAGMNQFKDVFLGAEKRSYVRAA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F +
Sbjct: 65  TSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKRDAIAYAWELLTAAEWFGI 124

Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           D+ +LY+T+++       D+EA + W + +G+  ++I  ++  DNFW M ETGPCGPCSE
Sbjct: 125 DKSKLYVTIFEGDAQVPRDDEAEQFWIE-AGVPKERIFEMSAKDNFWQMGETGPCGPCSE 183

Query: 175 IFFDQG---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK-----QERFILPKMSIDT 226
           I++D G      PG       + +RY+EIWNLVFMQF++         +   LPK SIDT
Sbjct: 184 IYYDLGLEAADEPGTDKPFPLDEQRYVEIWNLVFMQFDRMIDAATGGAQLTPLPKPSIDT 243

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGLER+A VLQ  T+N++ DLF  LI  + +++G         + ++I DH R+++FLI
Sbjct: 244 GMGLERIAAVLQGVTSNFETDLFTPLIAKAAELSGATD--LTSSSLKIIADHARAATFLI 301

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG++P NEGRGYVLR+I+RR + + RLLG  +P M  ++ A+  EM  AYPELI +   
Sbjct: 302 SDGVIPLNEGRGYVLRKILRRGIRHGRLLGQEQPFMHEMVYAVRDEMQVAYPELIDSAER 361

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + + +E+++F +TL  G       LS +  + + +G  AF+LY+T G+PLD M D   
Sbjct: 362 VAKVVLAEEQQFARTLQLG-------LSQMTNETLSSGAAAFRLYETFGMPLDFMTDAAR 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G    D+  F  A EE++ RARA   G    +    +  L      T F+GY  LR  
Sbjct: 415 DAG-IEFDLPGFEAAKEEEQQRARASWRGGSQKSASPAFRELA----KTDFLGYGGLRAD 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                    V A+V+ G  V+    G + EVV D T FYA++GG
Sbjct: 470 GV----------------------TVLALVKDGVGVQALHPGDEGEVVLDATSFYADSGG 507

Query: 527 QLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+GD G          L       K       H +V +  +     L   ++ + R    
Sbjct: 508 QVGDVGWLYPTDHTGALAEVKGCTKPVQGVFAHKVVVKRDISVGDRLDAVVNGEVRSATI 567

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ THLLH AL  +LG+HV Q GS +    LRFD +H   I   +L+ IED VN  + 
Sbjct: 568 RNHTGTHLLHAALREVLGTHVKQAGSLVNSARLRFDFSHFAGIAPEDLQEIEDIVNAQVL 627

Query: 645 QNLPVVTRIMNREDAIASG--AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            N  V T      D       A AL G KY D+VRVV +     G  S+ LCGG H  +T
Sbjct: 628 GNTRVETFEDVPIDVAVHEFKATALFGEKYGDKVRVVKI-----GDFSTELCGGIHTKAT 682

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV----SQGNVVG 758
           GEI LL +V ESS  +GIRR+EA+TG  +        +  +     +          +  
Sbjct: 683 GEIGLLKLVGESSAASGIRRVEAVTGTGSLKEFRRDFDVARVATQVIGGSSLPPAEALQQ 742

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVM 813
           ++    EE +KL+    + +++      +       ++  +  ++  +S +D  +++ ++
Sbjct: 743 KLSAQDEELKKLRRELDQARMKSASSATANAAESAVEVKGIKVLAQRVSGLDRNQMRQLV 802

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D L+ +I  G+++L   +++ K +++  VT+DL  +  A  +    A  +GG G GGRP 
Sbjct: 803 DNLRTQIGEGVVVLGMATEDGKVALIAGVTKDLTSKVQAGKVVGALAAKVGGKG-GGRPD 861

Query: 874 MAQSGGPNGNKAD 886
           +A++GG + ++ D
Sbjct: 862 LAEAGGSDPSQLD 874


>gi|57233592|ref|YP_180805.1| alanyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|83305845|sp|Q3ZAE4|SYA_DEHE1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57224040|gb|AAW39097.1| alanyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 871

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/907 (37%), Positives = 516/907 (56%), Gaps = 47/907 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    
Sbjct: 1   MFSSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T+ QKC R      D+++VG    H T FEMLGNFS G YFK+ AI  AW+ +T+  ++
Sbjct: 61  MTSCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQ 179
              +L++TVY +D+EA  LWK+  G+   +I+R+   DNFW    ++GPCGPCSEI +D 
Sbjct: 116 PAEKLWVTVYLDDDEAIALWKEQ-GVPEGRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174

Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G+ +  G    +   +  R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  ++
Sbjct: 175 GQEMGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILM 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q + N Y+ D+F  +I+ + Q++G +Y  +       R++ +H R  +FLIADG++P   
Sbjct: 235 QFRKNVYETDIFAPVIEKACQLSGRQYGIDAETDKALRIVSEHSRGITFLIADGVIPDKA 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + R LG  +P ++ +  A+   M   YPEL + +  + E + SE+
Sbjct: 295 GRGYVLRRLLRRAVLFGRRLGLEKPFLVDMAGAVIARMSGIYPELNKRQAYVLEMIASEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF +TL  GL LL+ ++      +I +G  AFKLYDT+G P+++  +I   RGL+ +D+
Sbjct: 355 ARFSETLATGLELLEEIVRQTKGGQI-SGQDAFKLYDTYGFPVEMTTEIAAERGLS-VDL 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E QR++AR+                       T F+GY+L R           
Sbjct: 413 GGFEAEMEVQRTKARSSRKFSFDAAATAEAVKNMRHGEKTCFVGYELTRQ---------- 462

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S +  I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG  I
Sbjct: 463 -------------KSTIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEII 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G R ++ +      G+F+H   V  G L+   +    ID + RR ++ NH+ATH+L  
Sbjct: 510 TGGGRFEVKNTLHLPNGVFLHQGRVISGCLKIAETAAAHIDEERRRDIARNHTATHILQT 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG  V Q GS +TP+ LRFD +H KP+T  E++  E+ VND I +NLPV    M 
Sbjct: 570 ALRQVLGEQVQQRGSVVTPERLRFDFSHLKPMTKDEIRRAEEFVNDKIRRNLPVYAEEMP 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A+  G  AL G KY DRVRV+ V        S+ LCGGTHVS++GEI L  IVSESS
Sbjct: 630 YRHALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVSASGEISLFKIVSESS 686

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG+ A +++  Q + L  L+  L+ +      ++ E+ EE   L+    
Sbjct: 687 VGAGLRRIEAVTGREAEAYINLQQDSLSELSGMLEAAPEESPRKLAELKEEIDTLKKTVQ 746

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + Q++  +             +  +   ++ V++  L    D L+ K+ SGII+L  +
Sbjct: 747 NLERQMSRGEAEELLSKAEDYKGIKLLVSRMTSVNADTLHETADFLRDKLGSGIIVLGTV 806

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S E K   L +VT DL+++ ++A ++ +  +++ GGGG GG+P+MAQ GG +  K D+A+
Sbjct: 807 S-EDKPFFLCMVTPDLIEKGYHAGNIVKKLSQIAGGGG-GGKPNMAQGGGRDKAKLDEAL 864

Query: 890 AGVASFL 896
             V   L
Sbjct: 865 QAVKGML 871


>gi|223937386|ref|ZP_03629291.1| alanyl-tRNA synthetase [bacterium Ellin514]
 gi|223893937|gb|EEF60393.1| alanyl-tRNA synthetase [bacterium Ellin514]
          Length = 908

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/952 (34%), Positives = 485/952 (50%), Gaps = 103/952 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
              S IR +FL+FF+   H ++PSSSL+P + P L+FTN+GM  F  IF GQ+K      
Sbjct: 1   MTSSQIRQSFLDFFKSKQHTIVPSSSLMP-DSPNLLFTNAGMNQFVPIFLGQKKADVSKW 59

Query: 59  --------QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110
                         QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFG YFK+ AI  A
Sbjct: 60  AGAVPSLDTRAADTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSFGDYFKKEAIDWA 119

Query: 111 WDLLTKEFDLDQRRLYITVYDE----------DEEAFKLWKKI---SGLSAD-KIIRITT 156
           W+L+T+ +   + RLY TVY            D+EA+ LW      +GL     I+    
Sbjct: 120 WELVTEVWRFPKERLYATVYSPDKSLGDPSDFDQEAYDLWAAKFSAAGLDPKVHIVNGNK 179

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M +TGPCGPCSE+  D            ++     IEIWNLVF+QF        
Sbjct: 180 KDNFWMMGDTGPCGPCSELHVDLTPQGDTKGALVNKGTAECIEIWNLVFIQFNANPGGTF 239

Query: 217 FILPKMSIDTGMGLERMATVLQEKT----------NNYDIDLFKHLIQASEQVTGMKY-- 264
             LP   +DTGMG ER+ +++Q             +NY+ D+F+ +  A E+++G +Y  
Sbjct: 240 SPLPAKHVDTGMGFERVTSIMQGSHGFKDFANAKISNYETDIFRPIFDAIEKLSGKRYGS 299

Query: 265 ------------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                       +    V  RVI DH+R+ SF IADGI P N  R YVLRRI+RRA+ Y 
Sbjct: 300 TLPKSGSTGDTEQEKVDVAFRVIADHIRTLSFSIADGIQPGNTDRNYVLRRILRRAVKYG 359

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           R LG+ EP    L+  L   MG  +PE+ + K  +++ +RSE+E F KTLDRG+ L +  
Sbjct: 360 RTLGFHEPFFYKLVDVLAETMGQVFPEIRERKQHVKDVIRSEEEAFNKTLDRGIELFNQE 419

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           ++H+     L G  AFKLYDT+G PLD+ + +   RGL  +D+  FN  ++EQ+ R++A 
Sbjct: 420 IAHVKPGHQLQGPFAFKLYDTYGFPLDLTELMARERGL-AVDVAGFNLLMDEQKKRSQAA 478

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                    E I  S  E    T+FIG+D L+                            
Sbjct: 479 QKK------EVISLSQIETTVPTKFIGFDQLQAKT------------------------- 507

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                  +++E      K  VV D +  YAE GGQ+GDTG     G   ++ + QK    
Sbjct: 508 -------KVLEVVGLKDKTAVVLDTSSAYAEMGGQVGDTGELSQGGKLWRVENTQKSGNT 560

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
                A  +    +T   + LT+D + R  +  +H+ TH+LH A+  ++    SQ GS +
Sbjct: 561 WLHFLADGDA--PQTGSEVELTVDRERRNAIQRHHTVTHILHWAIHEVVSREASQKGSFV 618

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL-PVVTRIMNREDAIASGAAALLGTK 671
            PD L FD   S+P+T  ++  +E  VN+ I +N     T +++ +           G K
Sbjct: 619 GPDKLTFDFN-SQPLTPQQVADVEKLVNERILENAGVSWTEVLHADVKGRKDVMQFFGDK 677

Query: 672 YNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
           Y DRVRVV +  + G    +S  LCGGTH   TGEI L  I+ ES++ AG+RRIEA+ G 
Sbjct: 678 YGDRVRVVQIGGKAGELNGYSMELCGGTHTQGTGEIGLFRIIGESAVAAGVRRIEAVAGL 737

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLS 787
            A      + + +KS+A  +    G +  +++ +  + ++L+       +K   N     
Sbjct: 738 EAYGKATDEIQLIKSIAGKVNAPIGELEKKIDALLAQQKELERQLKAVNQKEAANTAKSL 797

Query: 788 CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             K A +N +  II  +   D   L+S+ DAL+ + + G+++L G +     +++  V+ 
Sbjct: 798 IGKAATLNGIPAIIENLGSADGDTLQSIADALKGQFK-GVVVLGGAAN-GAVALVASVSP 855

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +   +  A  + +  A ++ GG GGG+P  A+ GG + +K D+A+A     +
Sbjct: 856 EFTAKVQAGKIIQGIAPIV-GGKGGGKPDNARGGGKDVSKLDEAMAKAKGLI 906


>gi|257878215|ref|ZP_05657868.1| alanyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257881004|ref|ZP_05660657.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257889586|ref|ZP_05669239.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|260559260|ref|ZP_05831446.1| alanyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293559338|ref|ZP_06675880.1| alanyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|294622256|ref|ZP_06701310.1| alanyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|314939752|ref|ZP_07846974.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314941747|ref|ZP_07848624.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314948292|ref|ZP_07851684.1| alanyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314952380|ref|ZP_07855387.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314992001|ref|ZP_07857454.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314995701|ref|ZP_07860791.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|257812443|gb|EEV41201.1| alanyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257816662|gb|EEV43990.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257825946|gb|EEV52572.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|260075017|gb|EEW63333.1| alanyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291598227|gb|EFF29322.1| alanyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|291606702|gb|EFF36094.1| alanyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313590092|gb|EFR68937.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313593436|gb|EFR72281.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313595497|gb|EFR74342.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313599425|gb|EFR78268.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313640981|gb|EFS05561.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313645273|gb|EFS09853.1| alanyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 880

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/920 (36%), Positives = 503/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D I  I   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F  +       LP  +IDTGMGLE
Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q+ + N++ DLF  +I A E++   +KY       ++++VI DH+R+ SF I D
Sbjct: 234 RMVSIVQDASTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + ++ QR RAR+      S   +     L +    ++FIGY      
Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  IV+   ++ E   G+  +++FDQTPFYAE GG
Sbjct: 471 -----------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   +       +KA      H +  +  +    +  L ID   R ++  
Sbjct: 507 QVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T   + + A   GA AL G KY   VRVV++        S  LCGGTHV++T  I
Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R+LQ  + +   +L  +           I     ++  +   D  +L+ + D  ++K
Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I++L    +E K S+L  +T++  +    A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      A+     ++ +
Sbjct: 860 GKNPAGIPDALKAAKEWVAQ 879


>gi|206602304|gb|EDZ38785.1| Alanyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG']
          Length = 891

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/909 (39%), Positives = 517/909 (56%), Gaps = 47/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   +R  FL +F  +GH+++PS+SLIP  DPTL+FTN+GMVPFK+IF G EK   +  
Sbjct: 1   MNSWELRQKFLLYFNGSGHDVVPSASLIPAGDPTLLFTNAGMVPFKDIFLGAEKTTRKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++QKCVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI  AW  LTKE  +D
Sbjct: 61  VSIQKCVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAISFAWTFLTKELGMD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           +R L++TVY ED+EA +LW++++ +  D+I+R+   DNFW M +TGPCGPCSEI  DQGE
Sbjct: 121 RRLLWVTVYREDDEAERLWREVTDVLPDRIVRLGEKDNFWQMGDTGPCGPCSEILVDQGE 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWNLVFMQ+++ ++     LP+ SIDTGMGLER++ V+Q+
Sbjct: 181 RFSCGSPDCKVGCDCDRYLEIWNLVFMQYDRNSEGVLSPLPRPSIDTGMGLERLSAVIQK 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296
           K +NY+ DLF  LI+  E  + + Y          +RV+ DHLRSS FL+ +GI P+NEG
Sbjct: 241 KDSNYETDLFMPLIRTIETYSRVPYGAGEGSLDHAYRVMADHLRSSVFLLHEGIAPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RG+VLRRI+RRA+ + R LG   P++  L  ++   M   YPEL  + L I++ LR E+ 
Sbjct: 301 RGHVLRRIIRRALLFGRELGLPHPILPALADSVAEMMAKPYPELRTSLLRIQDVLRLEEG 360

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL+ GL L+  +L  L   ++++  G++ F L+DTHG PLDI++D    +G   +D
Sbjct: 361 RFHQTLESGLPLVQEMLRTLEKKQEKVFPGEMLFLLHDTHGFPLDIVEDAAKMQG-ILLD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + +EEQR R R+      +G  E    S      + +F GY+             
Sbjct: 420 YKGFEEKMEEQRERGRSSW----TGKKEDFPLSSDRLKESVEFQGYEKT----------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        +   V  +++  E V+E  +G+ V VV D+T FY E GGQ+GD G  
Sbjct: 465 ------------SLQGTVLFLLKGKEEVKEVHAGESVLVVLDKTVFYPEGGGQVGDVGDL 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           IG    +++   +K   G  V    V  G +    ++   +D + R+    +H+ATHLLH
Sbjct: 513 IGPFGYIRVRGAKKPYPGWIVLAGEVVSGKVSVGETIDQHVDEEARQGSERHHTATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL T+LG  V Q GS + P+ LRFD T  +P++   L ++E  VN  I +N PV  R M
Sbjct: 573 AALRTVLGEQVRQAGSLVAPERLRFDFTCPQPVSPENLLAVEALVNGWIFRNSPVDAREM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +  A+  GA A    KY DRVRVV V        S  LCGGTHV STG+I  L I+ E+
Sbjct: 633 EKSKALDMGALAFFDEKYGDRVRVVQVPG-----TSVELCGGTHVRSTGQIGSLLILQET 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AGIRRIEA+ G  A    +   ++LK L   L+    ++  +   I  E    Q   
Sbjct: 688 GVAAGIRRIEAVAGPLAYQKAVTWRQELKGLRELLEAGTSSLEEKTRTILRENAAYQKEI 747

Query: 775 AKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K     L+         ++         +S  DS+EL++ MDA++ KI SG I+L+G
Sbjct: 748 QSLKSRLFSLEEKHSRKEMLEVDGHQLAVIHVSLEDSRELRARMDAIKSKIPSGAILLIG 807

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + + K + L   + DL + F      +  A  + GG GGG+P  A+ GGP  +     +
Sbjct: 808 ETTD-KLAFLGWTSPDLGEAFPISQWVKTLAAEV-GGKGGGKPSWAEGGGPKPDDVGSFL 865

Query: 890 AGVASFLKK 898
               + +++
Sbjct: 866 QSAKTRMEE 874


>gi|169824323|ref|YP_001691934.1| alanyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|205830092|sp|B0S104|SYA_FINM2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167831128|dbj|BAG08044.1| alanyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 873

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/909 (35%), Positives = 513/909 (56%), Gaps = 53/909 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  ++ IR  FL++F + GH ++ S  LIP +D +L+  N+GM P K  FTG++K   
Sbjct: 1   MKNYGLNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ Q+C+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AWD LT E 
Sbjct: 61  DRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNEL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ +  L+++VY+EDEEA+ +W    G+S ++++++   DNFW + + GPCGPCSEI  D
Sbjct: 117 EVPKDILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVD 175

Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           +G            +EGER++E+WNLVF QF +    +   +   +IDTGMGLER+  VL
Sbjct: 176 RGFEFDPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHPNIDTGMGLERITMVL 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +   N ++I L K +I+  E+++G+KY     N V+ R+I DH+R+ +FLI DG++P+NE
Sbjct: 236 ENADNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            RGYVLRR++RRA  + +LLG  +  +  ++ +      S YPEL + +  I +   +E+
Sbjct: 296 QRGYVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ++F +TLD GL +LD +L      ++ +G+ AFKLYDT+G P+D+ ++++       +D 
Sbjct: 356 KKFQETLDLGLNILDSMLKETD-SDVFSGENAFKLYDTYGFPIDLTKELVGEVNKT-VDE 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           + F + +EEQ+ RAR        G +    +   E+   T+F GY+ L+           
Sbjct: 414 VQFKKLMEEQKERARGSRNESNMGWSSDKKYG--EELPETKFDGYNSLKD---------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  I  + E      +GQ   +V D T FY E GGQ+GD G   
Sbjct: 462 -------------ESKVIEIYGEDE--NNLKAGQMGIIVLDCTTFYGEGGGQVGDKGIIY 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K  + +F+H+  V  G L     + + +D  NRR +  NHSATHLLH 
Sbjct: 507 NDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLHQ 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV+Q GS +  + LRFD+TH + ++  +L+ +E  VND IA  +PV    M+
Sbjct: 567 ALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEMS 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E++ + GA  L   KY D VRVV +     G +S  LCGGTHV +T +I +L I+SESS
Sbjct: 627 LEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISESS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG+    +L  +D  + ++   LK  ++  +  R+E   EE + L+   
Sbjct: 682 VAAGVRRIEAITGRAVYKYLKERDRLIDNVKHSLKASNEDEITRRIEMNTEEIKGLKKKL 741

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                +    ++        ++      +  +S +D+   +   + ++ K++ G+++L  
Sbjct: 742 KDITNKDLSSNVDSVINDAVEVNGTKVCTFELSGLDNNSFRDFGENIKSKLEDGVVILAN 801

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            S E K S + +VT+  + +   A D+ R  AKV  GG GGGR   AQ+G  + +K D+A
Sbjct: 802 -SDESKVSFIALVTDSSVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDEA 859

Query: 889 IAGVASFLK 897
           +      +K
Sbjct: 860 LQKGIETVK 868


>gi|163790359|ref|ZP_02184791.1| alanyl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159874430|gb|EDP68502.1| alanyl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 882

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/916 (37%), Positives = 510/916 (55%), Gaps = 60/916 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF+  GH++ PS+SL+P  DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSNEVRQLFLDFFESKGHKVEPSASLVPFEDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFKE AI+ AW+ LT+     L
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTLFEMLGNFSIGEYFKEEAIEWAWEFLTEEKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY ED +A  +WK+  GL+ D I  I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPEKLYVTVYPEDTDAKMIWKEKIGLTDDHI--IDVADNFWDIG-AGPSGPDSEIFYDRG 177

Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E          E        R++EIWNLVF +F  +       LP  +IDTGMGLER+ +
Sbjct: 178 EAFNDLAENDPENYPGGENERWLEIWNLVFSEFNHKRDGTYEPLPNKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILP 292
           +LQ+   N++ DLF  +I+  + ++G+K  G N    ++ +VI DH+R+ SF I DG LP
Sbjct: 238 ILQDAPTNFETDLFMPIIEKVQALSGIKKYGENATDDISFKVIADHVRAVSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  M  L+P +   M S YPE+++ +  I + ++
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIDKAFMFKLVPVVGNIMNSHYPEILEQEEFIVKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+  +S L  +  + + G   FKLYDT+G P+++ ++     G 
Sbjct: 358 NEEERFHETINDGLTILNERISELKVNGEKTIAGSDIFKLYDTYGFPVELTEEFAQDEGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F   +  QR RARA   G  S   +   F+       + F+GY+         
Sbjct: 418 E-VDHEGFEIEMTAQRDRARAARSGEKSMGIQTKLFAGLND--ESLFVGYNKTTAM---- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                               I+  I     +V  A +G++V ++FDQTPFYAE GGQ+ D
Sbjct: 471 -------------------GILAVIATDEALVTTAKTGEQVRLIFDQTPFYAEMGGQIAD 511

Query: 531 TGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G       ++       KKA      H +     L    +  L +D   R +++ NH+A
Sbjct: 512 KGIIKDTTGKIVAKVTDVKKAPAGQPLHTVEVLESLTVGETYKLEVDETLRNKITRNHTA 571

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG H +Q GS +T + LRFD TH   IT  EL  +E  VN+ I ++LPV
Sbjct: 572 THLLHQALKDILGEHANQAGSLVTQNHLRFDFTHFGQITQKELNEMEQIVNEKIWESLPV 631

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           VT       A   GA AL G KY D VRVV+V     G +S  LCGG HVS+T EI +  
Sbjct: 632 VTVETEIAKAKEMGAMALFGEKYGDLVRVVNV-----GDYSIELCGGVHVSNTSEIGIFK 686

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYR 768
           I+SES I AG+RRIEA+T + A + L  + ++L ++A  +K  Q  +VV +V+++  E +
Sbjct: 687 IISESGIGAGVRRIEAVTSEAAYNLLQTEQKRLNAVADLVKAQQTQDVVTKVQQLQTELK 746

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +LQ  +   + +L  +       +  ++  +  +S  +   D  +L+ + D  ++K  S 
Sbjct: 747 ELQKENESLQAKLASDQAGDIFKNVQEVNGITVVSAEVDVNDMNQLRQLADQWKQKAVSN 806

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           ++ L G SK+ K ++L  V +  + + F A DL +  A ++GGGG GGRP MAQ+GG N 
Sbjct: 807 VLTL-GFSKDGKVNLLTAVDDATIKKGFKAGDLIKTIAPLVGGGG-GGRPDMAQAGGKNP 864

Query: 883 NKADQAIAGVASFLKK 898
                A+A V  ++ +
Sbjct: 865 AGLQDALAKVTEWVNE 880


>gi|167771374|ref|ZP_02443427.1| hypothetical protein ANACOL_02740 [Anaerotruncus colihominis DSM
           17241]
 gi|167666014|gb|EDS10144.1| hypothetical protein ANACOL_02740 [Anaerotruncus colihominis DSM
           17241]
          Length = 926

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/910 (34%), Positives = 495/910 (54%), Gaps = 53/910 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDP-TLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++ +R  FL FF+   H  LPS  L+P  D  +L+  NSGM P K  F G E P  + VT
Sbjct: 52  LNELREKFLSFFESKEHLRLPSFPLMPSADEASLLLINSGMAPMKKWFLGLETPPRRRVT 111

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R      D++NVG+T RH T+FEMLGNFSFG YFK  A   AW+ +TK  ++  
Sbjct: 112 TCQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEFITKALEMPV 167

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+++VY++D+EA ++W K  G+   +I+R+   DNFW +  +GPCGPCSEI+FD+GE 
Sbjct: 168 DRLWVSVYEDDDEAEQIWTKEVGVDPSRIVRLGKEDNFWEIG-SGPCGPCSEIYFDRGEQ 226

Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P      + +RY+E WNLVF QF+         +   +IDTGMGLER+A ++Q  
Sbjct: 227 YGCGKPTCGVGCDCDRYVEFWNLVFSQFDGDGNGHYERMEHPNIDTGMGLERLACIMQGV 286

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N +++D  +++++   ++ G++Y  +    V+ RVI DH+RS++F+++DGILP NEGRG
Sbjct: 287 DNLFEVDTVQNILKHVARIAGVEYHTDAKTDVSLRVITDHIRSTTFMVSDGILPQNEGRG 346

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG  EP +  +   +  E  +AYPEL++ +  I + ++ E+ERF
Sbjct: 347 YVLRRLLRRAARHGRLLGIHEPFLYQVCETVIQENANAYPELVEHRDYITKVIKVEEERF 406

Query: 359 GKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            +T+D+G+ LL  ++  +  +    I+ G  AF+LYDT+G P+D++++IL  R +  +D 
Sbjct: 407 ARTIDQGMELLTAIIDKIDSEMDKKIMPGADAFRLYDTYGFPVDLIREILAERKIK-LDE 465

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + ++ Q+ RAR     LG    E+   +    +G  +F+GY  +            
Sbjct: 466 EEFARQMQAQKQRAREARAALGDLGWEEDVLADVADHG--RFVGYTEM------------ 511

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + + AI++  + V+E   G+   +V D TPFYAE+GGQ GD+G   
Sbjct: 512 -----------AAQAHIVAIIKDDKRVDELHDGELGSIVLDVTPFYAESGGQAGDSGLIS 560

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G    + D +K   G FVH   +  G L    S+   I+   R  +  NH+A HLL  
Sbjct: 561 AGGNVFAVYDCKKSKTGHFVHIGELTAGTLAVGDSVSAAINVDRRADIMRNHTACHLLQA 620

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q G+       RFD +H   +T  ELK +E+ VN ++  ++ V    M 
Sbjct: 621 ALRQVLGDHVHQAGAFYDDTICRFDFSHFSAVTPEELKRVEELVNRVVLASIDVSVSEMP 680

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A   GA AL G KY D VRV SV        S  LCGGTH+ +T ++ L  IV ESS
Sbjct: 681 IDEAKKLGAMALFGEKYGDVVRVCSVPG-----ESVELCGGTHLKNTAQVGLFRIVKESS 735

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEA+TG+     +  Q+  ++  A+ LKV +   +  R E +  E R+ +   
Sbjct: 736 VAAGVRRIEAVTGRNVLRLMDEQETTMEKTAAALKVGNLSELPARAEALNAESREQKRRL 795

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              + +L    LS       ++  +   S  +       L+ + D ++      +     
Sbjct: 796 EAAEAKLAESQLSGVFDNAQQVGGIYIASVAMMGAKIDALRRMGDRVRDSRPDAVCA-FS 854

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K S+L+V  +D + +  +A  + +     L GG GGGRP  A  G     + D+A
Sbjct: 855 TVNDGKGSILVVCGKDAVAKGAHAGKIVKEL-TALCGGSGGGRPDNAMGGTSEIFRIDEA 913

Query: 889 IAGVASFLKK 898
           +A + + + K
Sbjct: 914 MAQLPAIVGK 923


>gi|305681135|ref|ZP_07403942.1| alanine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659340|gb|EFM48840.1| alanine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 889

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/921 (34%), Positives = 485/921 (52%), Gaps = 61/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F   F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRERFTHHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFPNG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTSPID 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              +  D  ++++TVY +D+EA  +W+ + G+ A++I R+   DNFWSM   GPCGP SE
Sbjct: 116 EGGYGFDPEKIWVTVYLDDDEAANIWENVVGIPAERIQRLGMADNFWSMGIPGPCGPSSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228
           I++D+G    G   G + +  RY+EIWNLVFM+ E+       N +    LPK +IDTGM
Sbjct: 176 IYYDRGPEY-GNEGGPAADDSRYLEIWNLVFMEKERGAGTGKDNFEILGPLPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ   N Y+ DL + +I  ++++TG  Y     + +  RVI DH R++  +I
Sbjct: 235 GVERIACLLQGVDNVYETDLLRPVIDEAQRLTGATYGANHEDDIRFRVIADHSRTAMMII 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+   +  
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGKTMESFMNTIMDTMTPSYPEIADNRER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I+    +E+  F KTL+ G  L +   + + ++    + G  AF L+DT+G P+D+  ++
Sbjct: 355 IQRVAITEETAFLKTLESGTELFETTAAKIKQEGKTTVAGADAFALHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F++ + EQR+RA+A S     G T+   +        T+FIGYD L 
Sbjct: 415 AAEAGL-QVDTEGFDKLMAEQRARAKADSQAKKHGHTDLSIYRDWVDNHPTEFIGYDEL- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  ++  G+ V E  +G  VEV+ D + FYAEA
Sbjct: 473 ----------------------TAQSHVIGLLSDGKKVSEVSAGHDVEVILDASTFYAEA 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G        L++ DVQK  + ++VH A VE G      ++   +D   R    
Sbjct: 511 GGQIGDRGTMTLGDSLLRVNDVQKIGKKLWVHRATVETGGFALGDTVTAAVDPAWRHAAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL+H AL  +LG    Q GS   P  LRFD  +++ +T  +L+ IE   N  + 
Sbjct: 571 QAHSATHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPEQLEHIELITNQAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T     ++A   GA AL G  Y + VRVV +    GG  S  LCGGTHV+ + +
Sbjct: 631 ADWQVNTIETTLDEAKTMGAMALFGENYGNIVRVVEI----GGPFSMELCGGTHVAHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I+ ESSI +G RRIEA +G  +  +L  +   +  LAS LK     V  R+ ++ 
Sbjct: 687 IGPVSILGESSIGSGARRIEAYSGLDSFKYLSKERTLVAGLASALKAPSAEVPDRIAQLT 746

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + ++ +      +    +   S      H    +   S ++     + +L+++   ++ 
Sbjct: 747 TKLKEAEKTIENLRKAELLAQGSRLVARAHLPNGITVASAVLPDGTTAGDLRTLAADVKN 806

Query: 819 KI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
            +  ++G+++L   + + K   ++  T++ + R  NA  + +     +  G GGG+P MA
Sbjct: 807 HLAGEAGVVLLASSTSDGKVPFVVAATKEAIARGANAGTIVKTLNPYI-DGRGGGKPDMA 865

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q  G N +   + +   +  +
Sbjct: 866 QGSGSNPDGLPEGLKAASDHI 886


>gi|237752004|ref|ZP_04582484.1| alanyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376571|gb|EEO26662.1| alanyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
          Length = 963

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/996 (33%), Positives = 508/996 (51%), Gaps = 143/996 (14%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQA 60
                IR  +LEFF+  GH++  S  L+P +D +L+FTN+GMV FK+IFTG+   P  + 
Sbjct: 1   MKTKDIRALYLEFFKSKGHQVYESMPLVP-DDASLLFTNAGMVQFKDIFTGKIPTPKQRR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+    
Sbjct: 60  ATSAQLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKKDAIAYAWEFVTEVLGF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+  LY+T+++ D+EAF+LW K   + + +I R+   DNFW M +TGPCGPCSEIF DQG
Sbjct: 120 DKSVLYVTIHESDDEAFELWCK--HIDSSRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQG 177

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G       +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+A +L+ 
Sbjct: 178 AEFFNGEEDYFGGDGDRFLEIWNLVFMQYERSADGSLKPLPKPSIDTGMGLERVAALLEG 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +N+D  +F  LI   E ++   Y   +  + RVI DH R+ +FL+A G+    EGRGY
Sbjct: 238 KRSNFDSSIFMPLIHKVESLSKQTYVYESGASFRVIADHARAVAFLLAQGVNFDKEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +  LLG  +  +  ++  +C  MG  Y  L + K  ++E  ++E+ERF 
Sbjct: 298 VLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDTMGGHYGYLKERKNAVQEQCKAEEERFF 357

Query: 360 KTLDRGLVLLDGVLSHLG------------------------------------------ 377
           +T++ G+ L +  +  L                                           
Sbjct: 358 ETIESGMALFNKEIQTLKAKTNTKAFGLNNDNAEAVEMRNCGFQGGDEGSYLEGNDRASN 417

Query: 378 --------KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
                        +G+VAFKLYDT+G PLD+ QD+L   GL  +D+ SF + ++EQ+ R+
Sbjct: 418 AESAIHRSNATRFSGEVAFKLYDTYGFPLDLTQDMLRELGL-DVDMQSFEKCMQEQKDRS 476

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           +AH  G G    +  + +L  ++G   F+GY+ +                        V 
Sbjct: 477 KAHWKGSGDSAKDGDFNALLSEFGENAFVGYENV-----------------------SVE 513

Query: 490 SIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI---RLQITD 545
           S + A++    + VE   +GQ+  V+ + TPFY E+GG +GD G  +G  +   +     
Sbjct: 514 SKILALLDSSFKRVESLGAGQEGWVMLESTPFYPESGGPVGDKGFLLGHSVLSDKSGGAS 573

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN-------------------------- 579
                  + V H+        +  SL     ++                           
Sbjct: 574 YCSLQRTLSVSHSQDLHNPDFSSQSLECQDSHKVDSSSPQNIVAKVLDTQKYFGLNLSKV 633

Query: 580 -------------------RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                              R +++ +HSATHLLH+AL  ILGSH++Q GS +  + LRFD
Sbjct: 634 VATSMLKAGDLVKAQVDSSRFEIAKHHSATHLLHYALRQILGSHIAQAGSLVETNRLRFD 693

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +H K + + EL+ IE  VN  IA++ P V   M   +A A GA AL G KY + VRV+S
Sbjct: 694 FSHPKALNTDELEQIEALVNSKIAESSPQVCETMGITEAKAKGAMALFGEKYGENVRVIS 753

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                    S  LCGG H+ +T EI   YIV ESS+ +G+RRIEA+ G+ A  +     E
Sbjct: 754 FGD------SIELCGGIHIQNTAEIGSFYIVRESSVSSGVRRIEAVCGKAAYHYGKNALE 807

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            +K     LK    +++  + ++ E+ ++L+   +  K     + L    +  V  ++  
Sbjct: 808 SIKQAKEALKAQ--DIIQGIFKLKEQIKELKEKAS--KSSTGAKTLESKMLNGVKLIALK 863

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +   D+KE K ++D  + + +   I+L+      K ++   V + +  +  A    +  A
Sbjct: 864 LENTDTKEAKELVDNAKNENEKVAILLI-TESSGKVTITAGV-KGVESKLKAGAWVKQVA 921

Query: 861 KVLGGGGGGGRPHMAQSGGP--NGNKADQAIAGVAS 894
           ++L GG GGGR   A +GG   + NK  +A+     
Sbjct: 922 QIL-GGNGGGRDDFATAGGKITDSNKIKEALGLAEK 956


>gi|307721802|ref|YP_003892942.1| alanyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
 gi|306979895|gb|ADN09930.1| alanyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
          Length = 850

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/896 (37%), Positives = 493/896 (55%), Gaps = 53/896 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF+   H  +PS+ L+P +D TL+F N+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIREEYLKFFESKQHTRVPSAPLVP-DDATLLFNNAGMVPFKSIFTGEVPRPANPRATSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   LD+ +
Sbjct: 61  QTCIRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKEEAIAYAWEFITEVLHLDKDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++TV++ D+EA  +WKK   ++A++I+R+   DNFWSM +TGPCGPCSEIF+DQG E  
Sbjct: 121 LWVTVHESDDEAEAMWKK--HIAAERIMRLGDKDNFWSMGDTGPCGPCSEIFYDQGAEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFE-QQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G       EG+R++EIWNLVFMQ+E ++   +R  L   SIDTGMGLER+  + +   +
Sbjct: 179 TGPEDYMGGEGDRFLEIWNLVFMQYEVKEKGGQRVPLAHPSIDTGMGLERVVAIKEGALS 238

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NY   LF  +I+  E + G +Y   +  ++RVI DH+R++ FL+A G+  +NEGRGYVLR
Sbjct: 239 NYGSSLFMPIIRKVEDMIGKEYIYASGASYRVIADHIRTTVFLLAQGVNFSNEGRGYVLR 298

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +  LLG+ EP M  L+  L   MG  Y  L      ++E +  E+ RF KT+
Sbjct: 299 RILRRAVRHGYLLGFREPFMYKLVDTLVDIMGGEYEYLNTKANAVKEQIELEEARFFKTI 358

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           + G+ L +  + +       +G+VAFKLYDT+G PLD+ +D+L  + L+ +D   F + +
Sbjct: 359 ESGIALFNMEMQNTKDA--FSGEVAFKLYDTYGFPLDLTEDMLKEKNLS-LDTAKFEELM 415

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            EQR RA+A   G G       + +L E++G  +F+GY+                     
Sbjct: 416 SEQRKRAKAAWKGSGDDAVSGDFKALLEEFGENEFVGYET-------------------- 455

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
             T+  S ++  + +    VE  + GQK  V  D TPFYA++GGQ GD G        L 
Sbjct: 456 --THHASKVLSLLDENFIRVEALIKGQKGWVFLDVTPFYAQSGGQCGDAGELKEHAKVLD 513

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                                 L+   ++   +D      ++ +HSATHLLH  L  +LG
Sbjct: 514 TKKFFGLNLSRIAV-----ENELKVGDAVDAEVDISRNE-ITKHHSATHLLHAVLFDVLG 567

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            H+SQ GS +  + LRFD +H K ++  EL+ IE+ VN  I + +P  T ++  E+A  S
Sbjct: 568 EHISQAGSLVEANRLRFDFSHPKAVSEQELQEIEERVNVEIMRAIPAQTEVLPIEEAKKS 627

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA +  G KY D VRVVS         S   CGG HV +T  I    I  ES + AG+RR
Sbjct: 628 GAKSQFGEKYGDEVRVVSFA-----DASVEFCGGVHVENTANIGSFIITKESGVSAGVRR 682

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G  A  +   Q   LK     +K    +++  +  +     +L+    + +    
Sbjct: 683 IEAVCGNTAYKYFCEQRALLKEAQGEVK--NLDLLAGIHRLKSNIAELKSELKEAQESAK 740

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
           VE     K   +N ++ ++ E+ S ++K  +D L+ +      ML  +  + K  +   V
Sbjct: 741 VE----IKTDAINGVTVVVDELPSGDIKEKIDELKNQNDKLCAMLFQVKGD-KVLIAAGV 795

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                    A D  +  A +LGGGG GGRP  AQ+GG + +K  +A      F+ +
Sbjct: 796 KG---CEAKAGDWIKKIAPILGGGG-GGRPDFAQAGGKDASKLPEAKEEAMKFITE 847


>gi|264678535|ref|YP_003278442.1| alanyl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|262209048|gb|ACY33146.1| alanyl-tRNA synthetase [Comamonas testosteroni CNB-2]
          Length = 834

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/875 (39%), Positives = 502/875 (57%), Gaps = 56/875 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTNSGMV FK++F G +K  Y   T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+
Sbjct: 1   MFTNSGMVQFKDVFLGTDKRPYNRATSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNW 60

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT- 155
           SFG YFK+ +I+  W+LLTK F L   +L  TVY ED+EA+ +WK + GL A++IIRI  
Sbjct: 61  SFGDYFKKESIEWGWELLTKVFGLPAEKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGD 120

Query: 156 ------TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQF 208
                  +DNFW MA+TGPCGPCSEIF+D GE I GG P    E+G+R+IEIWN VFMQF
Sbjct: 121 NKGGKYKSDNFWMMADTGPCGPCSEIFYDHGEHIAGGPPGSPDEDGDRFIEIWNHVFMQF 180

Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN 268
           + +       LP   +DTGMGLER+A +LQ   +NY+IDLF+ LI+A+ + T  +    +
Sbjct: 181 DMKEDGSVVKLPAPCVDTGMGLERLAAILQHVHSNYEIDLFQALIKAAGRETSTED--LS 238

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328
             + +VI DH+R++SFL++DG++P+NEGRGYV RRI+RRA+ +   LG   P    L+  
Sbjct: 239 TPSLKVIADHIRATSFLVSDGVIPSNEGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVAD 298

Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388
           L  +MG AYP+L + +  I   L++E+ERF +TL  G+ +LD  L+  G  ++L GDVAF
Sbjct: 299 LVVQMGDAYPKLKEQEAHITSVLKAEEERFFETLANGMEILDSALA--GDVKVLPGDVAF 356

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           KL+DT+G PLD+  D+   RG+  +D   FN A++ Q+  ARA           K+  +L
Sbjct: 357 KLHDTYGFPLDLSNDVARERGVT-VDEAGFNAAMQHQKETARAAGKF-------KMDRAL 408

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +    A  F GYD L                         ++ + A+   G  V E  +G
Sbjct: 409 EYTGDANVFTGYDKL-----------------------AEAAKIVALYADGVSVNELKAG 445

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           Q   VV D TPFYAE+GGQ+GD G     G R  + D  K    +F HH ++E G L+  
Sbjct: 446 QSGVVVLDTTPFYAESGGQVGDQGVIAAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVG 505

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++   +D   R     NHS TH++H AL  +LG HV Q GS +  +  RFD  H+ P+T
Sbjct: 506 DAVEAQVDTAVRAATMRNHSVTHIMHKALREVLGGHVQQKGSLVNAERTRFDFAHNAPVT 565

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++ IE  VN  +  N     R+M+ E A  +GA  L G KY + VRV+ +       
Sbjct: 566 AEQIREIEARVNAEVLANTATDARVMDIESAQKTGAMMLFGEKYGETVRVLDIGS----- 620

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S  LCGGTHVS TG+I L  +V ES + AG+RRIE ITG+ A ++L   +  +   A+ 
Sbjct: 621 -SRELCGGTHVSRTGDIGLFKVVGESGVAAGVRRIEGITGENALAYLQSLESTVDQAAAA 679

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISE 803
            K     +  R+    ++ + L+   A  K +L              +  V  ++  +  
Sbjct: 680 FKAPAAELTNRIGGALDQIKALEKEIAALKGKLASSQGDELATQAADVNGVKVLAAKLEG 739

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            D+K L+  MD L+ K+ + +I+L  +  + K  +   VT+    +  A +L    A+ +
Sbjct: 740 ADAKTLRDTMDKLKDKLGAAVIVLAAVDGD-KVQLAAGVTKAETAKVKAGELVNFVAQQV 798

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GG G GG+P MA +GG +      A+A V +++ +
Sbjct: 799 GGKG-GGKPDMAMAGGTDAAAVPAALASVQAWVAE 832


>gi|262408299|ref|ZP_06084846.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294645925|ref|ZP_06723596.1| alanine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294805880|ref|ZP_06764750.1| alanine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|262353851|gb|EEZ02944.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|292638725|gb|EFF57072.1| alanine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294446909|gb|EFG15506.1| alanine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|295086606|emb|CBK68129.1| alanyl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
          Length = 872

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/919 (35%), Positives = 483/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+       FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTVNIEE-FNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLRIAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  +I  +  +      + ++ +K++   L+
Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNVQEIHGIKVIKFCAP-LPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G +   K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 851 AGGKNADGLPAAVEKVLEL 869


>gi|256379272|ref|YP_003102932.1| alanyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255923575|gb|ACU39086.1| alanyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 890

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/920 (35%), Positives = 495/920 (53%), Gaps = 60/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   F E F+  GH ++PS+SL+  +DP L+F N+GMVPFK  F G+    ++  
Sbjct: 1   MQTHEIIKRFREHFENAGHAVVPSASLL-LDDPNLLFVNAGMVPFKPYFLGEAPSPHKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D+D VG+T RH TFF+M GNFSFG YFKE AI+LAWDL+TK     
Sbjct: 60  TSVQKCVRT----PDIDEVGKTTRHLTFFQMAGNFSFGDYFKEDAIRLAWDLVTKSQDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL++TVY +D+EA  LW+KI+GL  ++I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPERLWVTVYLDDDEAADLWQKIAGLPPERIQRRDVEDNYWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFMQ E+     +   P        +IDTGMG+
Sbjct: 176 YDRGPEF-GAEGGPVVDEDRYLEIWNLVFMQNERGAGGAKRDYPILGELPSKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G KY     + V  RVI DH RS   L+ D
Sbjct: 235 ERVAFLLQGVDNVYETDLVRAVITKAEELSGRKYGDNPTDDVRFRVIADHARSGVLLVGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NE RGYVLRR++RR +  +RLLG TEP++      +   MG +YPEL+     IE
Sbjct: 295 GVTPGNEARGYVLRRLLRRIVRSSRLLGVTEPVLQTFAAVVRDTMGPSYPELVSGFARIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + L++E++ F +TLD G  + +            IL GD AF+L+DT+G P+D+  ++  
Sbjct: 355 QVLKAEEDTFLRTLDAGSRIFETAAGTVKSQGRAILPGDKAFQLHDTYGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + + EQR+RA+A + G  +G  ++  +    + GAT+F GY  L   
Sbjct: 415 EAGLT-VDEDGFRKLMAEQRARAKADAAGKKTGHGDQTVYRELLELGATEFTGYTELAS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  ++++ IV  G+ V+ A  G  VEVV D+TP YAE+GG
Sbjct: 473 ----------------------EAVLRGIVSGGKRVKSAREGDIVEVVLDRTPLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G  +  G  L++ DVQK A  ++VH   V  G +     +   +D + R      
Sbjct: 511 QESDAGVIVSGGAELEVVDVQKVARKLWVHQVRVVSGEIAEGEKVEARVDAEWRVGARQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG    Q+GS   P  LR D   +  ++ +    IE+  N  + ++
Sbjct: 571 HSGTHVVHAALRQVLGPSALQSGSYNKPGYLRLDFAWTGGLSESTRSEIEEVSNLAVRKD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV     +   A   GA AL G  Y++ VRVV +    GG  S  LCGGTHV  + +I 
Sbjct: 631 LPVSVVYTDMGGAQEMGAVALFGETYDETVRVVEI----GGRWSRELCGGTHVEHSSQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RR+EA  G  A  +L  +   ++++A+ LKV    V GRVE + E 
Sbjct: 687 PITVIGESSVGSGVRRLEAYVGIEAFKYLARERALVQNVAAMLKVPDAEVPGRVEALVER 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            R  +    K +    V            +  V+ ++  +       +++++   ++ ++
Sbjct: 747 LRVAEKELEKVRSAQLVASAGSLVSQALDVRGVSVLALALPEGTSGADVRAIASEVRGRM 806

Query: 821 --QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             + G++ L     + K S ++  T    D    A  L    A  + GG GGG+P +AQ 
Sbjct: 807 ADKPGVVALFAPDGD-KVSFVVATTAGARDLGLAAGKLVPAFAPAV-GGRGGGKPDLAQG 864

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG N     QA+A V + ++
Sbjct: 865 GGTNPAGVPQAVAAVLAEVE 884


>gi|298480309|ref|ZP_06998507.1| alanine--tRNA ligase [Bacteroides sp. D22]
 gi|298273590|gb|EFI15153.1| alanine--tRNA ligase [Bacteroides sp. D22]
          Length = 872

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/919 (35%), Positives = 483/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+       FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTVNIEE-FNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLRIAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  +I  +  +      + ++ +K++   L+
Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNVQEIHGIKVIKFCAP-LPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G +   K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 851 AGGKNADGLPAAVEKVLEL 869


>gi|303233900|ref|ZP_07320549.1| alanine--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302494825|gb|EFL54582.1| alanine--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 873

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/909 (35%), Positives = 511/909 (56%), Gaps = 53/909 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  ++ IR  FL++F + GH ++ S  LIP +D +L+  N+GM P K  FTG++K   
Sbjct: 1   MKNYGLNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ Q+C+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AWD LT E 
Sbjct: 61  DRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNEL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ +  L+++VY+EDEEA+ +W    G+S ++++++   DNFW + + GPCGPCSEI  D
Sbjct: 117 EVPKDILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVD 175

Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           +G            +EGER++E+WNLVF QF +    +   +   +IDTGMGLER+  VL
Sbjct: 176 RGFEFDPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHPNIDTGMGLERITMVL 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +   N ++I L K +I+  E+++G+KY     N V+ R+I DH+R+ +FLI DG++P+NE
Sbjct: 236 ENADNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            RGYVLRR++RRA  + +LLG  +  +  ++ +      S YPEL + +  I +   +E+
Sbjct: 296 QRGYVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ++F +TLD GL +LD +L      ++ +G+ AFKLYDT+G P+D+ ++++       +D 
Sbjct: 356 KKFQETLDLGLNILDSMLKETD-SDVFSGENAFKLYDTYGFPIDLTKELVGEVNKT-VDE 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           + F + +EEQ+ RAR        G +    +   E    T+F GY+ L+           
Sbjct: 414 VQFKKLMEEQKERARGSRNESNMGWSSDKKYG--EGLPETKFGGYNSLKD---------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  I  + E      +GQ   +V D T FY E GGQ+GD G   
Sbjct: 462 -------------ESKVIEIYGEDE--NNLKAGQMGIIVLDCTTFYGEGGGQVGDKGIIY 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K  + +F+H+  V  G L     + + +D  NRR +  NHSATHLLH 
Sbjct: 507 NDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLHQ 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV+Q GS +  + LRFD+TH + ++  +L+ +E  VND IA  +PV    M+
Sbjct: 567 ALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEMS 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E++ + GA  L   KY D VRVV +     G +S  LCGGTHV +T +I +L I+SESS
Sbjct: 627 LEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISESS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG+    +L  +D  + ++   LK  ++  +  R+E   EE + L+   
Sbjct: 682 VAAGVRRIEAITGRAVYKYLKERDSLIDNVKRSLKASNEDEITRRIEMNTEEIKGLKKKL 741

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                +    ++        ++      +  +S +D+   +   + ++ K++ G+++L  
Sbjct: 742 KDITNKDLSSNVDSVINDAVEVNGTKVCTFELSGLDNNSFRDFGENIKSKLEDGVVILAN 801

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            S E K S + +VT+  + +   A D+ R  AKV  GG GGGR   AQ+G  + +K D+A
Sbjct: 802 -SDESKVSFIALVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDEA 859

Query: 889 IAGVASFLK 897
           +      + 
Sbjct: 860 LQKGIETVN 868


>gi|293569836|ref|ZP_06680923.1| alanyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291587584|gb|EFF19461.1| alanyl-tRNA synthetase [Enterococcus faecium E1071]
          Length = 880

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/920 (36%), Positives = 503/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK +AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNKAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D I  I   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F  +       LP  +IDTGMGLE
Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q+   N++ DLF  +I A E++   +KY       ++++VI DH+R+ SF I D
Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + ++ QR RAR+      S   +     L +    ++FIGY      
Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  IV+   ++ E   G+  +++FDQTPFYAE GG
Sbjct: 471 -----------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   +       +KA      H +  +  +    +  L ID   R ++  
Sbjct: 507 QVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T   + + A   GA AL G KY   VRVV++        S  LCGGTHV++T  I
Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R+LQ  + +   +L  +           I     ++  +   D  +L+ + D  ++K
Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I++L    +E K S+L  +T++  +    A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      A+     ++ +
Sbjct: 860 GKNPAGIPDALKAAKEWVAQ 879


>gi|153951507|ref|YP_001398463.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
 gi|205830016|sp|A7H4N3|SYA_CAMJD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152938953|gb|ABS43694.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 842

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/897 (38%), Positives = 502/897 (55%), Gaps = 62/897 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF    HE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKRHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LYITV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYITVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSANGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDSIKEQIRFEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTVSGDFKNLLEKFGENHFVGYEKAE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V          V+ + TPFYA +GGQ  D          + 
Sbjct: 457 ----CESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIA 503

Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             +V    +   ++ + ++ G   +        ID + R Q++ +HSATHLLHHAL  IL
Sbjct: 504 KREVLDTQKFFNLNLSFIKAGEELKVGTIAHARIDAEKREQIARHHSATHLLHHALREIL 563

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A  
Sbjct: 564 GSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKK 623

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+R
Sbjct: 624 SGAIALFNEKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVR 677

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+  + A   +  Q E L      LK +  +++  V+++  E   L+          
Sbjct: 678 RIEAVVSKAALEFVKNQLEGLSKAKDELKNN--DILSGVKKLKNEILSLKNELKN----S 731

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           +  +L    I  V      +   D+ ++K+++D  + K    +I+L+ + K++K ++   
Sbjct: 732 SKTELDSKNIQGVEICVKRV---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAG 787

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           V +       A  L + +A++L GG GGGR   A +GG + +K D+A+      ++K
Sbjct: 788 VKDAP---LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKIDEALKQSLETIEK 840


>gi|255690436|ref|ZP_05414111.1| alanine--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|260623884|gb|EEX46755.1| alanine--tRNA ligase [Bacteroides finegoldii DSM 17565]
          Length = 872

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++  +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSDTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+       FN+ +++Q+ RAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMIVNIEE-FNEEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIRQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNTP-DLGIAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  ++  V  +      + ++ +K++   L+
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAALKERLLKNIQEVNGVKVIKLCAP-LPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G +   K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGSTDNGKPMLTVMLSDNLVATGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 851 AGGKNADGLPAAVEKVIEL 869


>gi|302380501|ref|ZP_07268966.1| alanine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311444|gb|EFK93460.1| alanine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 873

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/909 (35%), Positives = 511/909 (56%), Gaps = 53/909 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  ++ IR  FL++F + GH ++ S  LIP +D +L+  N+GM P K  FTG++K   
Sbjct: 1   MKNYGLNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ Q+C+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AWD LT E 
Sbjct: 61  DRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNEL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ +  L+++VY+EDEEA+ +W    G+S ++++++   DNFW + + GPCGPCSEI  D
Sbjct: 117 EVPKDILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVD 175

Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           +G            +EGER++E+WNLVF QF +    +   +   +IDTGMGLER+  VL
Sbjct: 176 RGFEFDPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHPNIDTGMGLERITMVL 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +   N ++I L K +I+  E+++G+KY     N V+ R+I DH+R+ +FLI DG++P+NE
Sbjct: 236 ENADNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            RGYVLRR++RRA  + +LLG  +  +  ++ +      S YPEL + +  I +   +E+
Sbjct: 296 QRGYVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ++F +TLD GL +LD +L      ++ +G+ AFKLYDT+G P+D+ ++++       +D 
Sbjct: 356 KKFQETLDLGLNILDSMLKETD-SDVFSGENAFKLYDTYGFPIDLTKELVGEVNKT-VDE 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           + F + +EEQ+ RAR        G +    +   E    T+F GY+ L+           
Sbjct: 414 VQFKKLMEEQKERARGSRNESNMGWSSDKKYG--EGLPETKFDGYNSLKD---------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  I  + E      +GQ   +V D T FY E GGQ+GD G   
Sbjct: 462 -------------ESKVIEIYGEDE--NNLKAGQMGIIVLDCTTFYGEGGGQVGDKGIIY 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K  + +F+H+  V  G L     + + +D  NRR +  NHSATHLLH 
Sbjct: 507 NDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLHQ 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV+Q GS +  + LRFD+TH + ++  +L+ +E  VND IA  +PV    M+
Sbjct: 567 ALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEMS 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E++ + GA  L   KY D VRVV +     G +S  LCGGTHV +T +I +L I+SESS
Sbjct: 627 LEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISESS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG+    +L  +D  + ++   LK  ++  +  R+E   EE + L+   
Sbjct: 682 VAAGVRRIEAITGRAVYKYLKERDSLIDNVKHSLKASNEDEITRRIEMNTEEIKGLKKKL 741

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                +    ++        ++      +  ++ +D+   +   + ++ K++ G+++L  
Sbjct: 742 KDMTNKDLSSNVDSVINDAVEVNGTKVCTFELNGLDNNSFRDFGENIKSKLEDGVVILAN 801

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            S E K S + +VT+  + +   A D+ R  AKV  GG GGGR   AQ+G  + +K D+A
Sbjct: 802 -SDESKVSFIALVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDEA 859

Query: 889 IAGVASFLK 897
           +      + 
Sbjct: 860 LQKGIETVN 868


>gi|153807409|ref|ZP_01960077.1| hypothetical protein BACCAC_01688 [Bacteroides caccae ATCC 43185]
 gi|149129771|gb|EDM20983.1| hypothetical protein BACCAC_01688 [Bacteroides caccae ATCC 43185]
          Length = 872

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 485/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAVMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMEDTKAAGKIEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +++  FN  +++Q+ RAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNLEEFNAEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E   +  ++   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPFMACVNTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVNARI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIVSESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNTP-DLGIAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       K K     E L  +  +I  +  +      + ++ +K++   L+
Sbjct: 733 YLEENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVIKFCAP-LPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G +   K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGSTDAGKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 851 AGGKNADGLPAAVEKVLEL 869


>gi|257884661|ref|ZP_05664314.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257820499|gb|EEV47647.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,501]
          Length = 880

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/920 (36%), Positives = 501/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LYITVY +D EA ++W +  GL  D I  I   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYITVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F  +       LP  +IDTGMGLE
Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q+   N++ DLF  +I A E++   +KY       ++++VI DH+R+ SF I D
Sbjct: 234 RMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
             LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 DALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + ++ QR RAR+      S   +     L +    ++FIGY      
Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  IV+   ++ E   G+  +++FDQTPFYAE GG
Sbjct: 471 -----------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   +       +KA      H +  +  +    +  L ID   R ++  
Sbjct: 507 QVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T   + + A   GA AL G KY   VRVV++        S  LCGGTHV++T  I
Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R+LQ  + +   +L  +           I     ++  +   D  +L+ + D  ++K
Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I++L    +E K S+L  +T++  +    A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 NISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      A+     ++ +
Sbjct: 860 GKNPAGIPDALKAAKEWVAQ 879


>gi|326382143|ref|ZP_08203835.1| alanyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198873|gb|EGD56055.1| alanyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 900

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/933 (34%), Positives = 483/933 (51%), Gaps = 74/933 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F + GH  +PS+SLI  +DP L+F N+GMVPFK  F G + P Y   
Sbjct: 1   MQTHEIRKRFLDHFIRAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGDQTPPYDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG T RH+TFF+M GNFSFG YFK  AI  AW LLT      
Sbjct: 60  TSVQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGDYFKREAITFAWKLLTDSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + +D  +L+ TVY +D+EA  +W+   G+ A++I R    DN+WSM   GPCGPCSEIF
Sbjct: 116 GYGIDPTKLWPTVYLDDDEAESIWRDEIGVPAERIQRRGMADNYWSMGVPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+       + +    LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GVEGGPEADEDRYIEIWNLVFMQNERGEGTSKDDYEILGPLPKKNIDTGMGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ DL K +I  + ++TG  Y      + V  RVI DH R+++ LI 
Sbjct: 235 ERVACLLQGVDNVYETDLMKPIIDLAAELTGRAYGAGNHEDDVRFRVIADHARTAAMLIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL------------MMHLLPALCTEMGS 335
           DG++PAN+GRGYVLRR++RR +   RLLG    +            M  ++  +   M  
Sbjct: 295 DGVVPANDGRGYVLRRLLRRIVRSIRLLGAGNEVSGPDGRGAANPTMERIISEVIDVMSP 354

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDT 393
           +YPEL Q +  I     +E+  F +TL  G  L               ++G  AF L+DT
Sbjct: 355 SYPELEQQRTHIVSVAVAEETTFARTLAAGSKLFSEAADATKKAGSSSISGTDAFTLHDT 414

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G P+D+  ++    GL  +D   F + + EQR+RA+A +    S   +   +      G
Sbjct: 415 YGFPIDLTLEMAAEAGLE-VDRDGFKELMGEQRARAKADASARKSSHADHSVYREFLDRG 473

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
           AT+F G+D L                          + V  +V  G+ V  A  G ++E+
Sbjct: 474 ATEFTGFDELVS-----------------------EARVLGLVAGGQRVRSAAPGTELEL 510

Query: 514 VFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D++P YAEAGGQ+ D G    GDG+RL + DVQK  + +++H  +V+ G +     ++
Sbjct: 511 ILDRSPLYAEAGGQMADRGTITTGDGVRLAVKDVQKVGKKVWLHKVVVDEGEIVEGDEVL 570

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            ++D   R   +  HS TH++H AL  +LG   +Q GS   P  LRFD      +T A+ 
Sbjct: 571 ASVDAGWRHGATQGHSGTHMVHAALRQVLGPTATQAGSLNRPGYLRFDFHAGTGLTDAQR 630

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE   N  +  N  V T   +   A + GA AL G  Y DRVRVV +    GG  S  
Sbjct: 631 DEIEQIANQAVESNFAVNTFETDLAKAKSMGAMALFGENYGDRVRVVEI----GGPFSME 686

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV+S+ +I  + ++ ESS+ +G RR+EA  G  +  +L  +   +  LA+ LKV 
Sbjct: 687 LCGGTHVASSAQIGPITVIGESSVGSGTRRVEAYVGMDSFRYLSRERALMAGLAASLKVP 746

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDS 806
              V  RVE++  + ++ +      + +     +S        + D   ++  +   VD+
Sbjct: 747 SEEVPDRVEQLVLKLKEAEKAVESLRAEQARAAVSGLIDEGATVGDTLVVAARVADGVDA 806

Query: 807 KELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVL 863
             L+ ++  L+ +I  ++ ++ L     + K    I  T+        A DL +  A ++
Sbjct: 807 NGLRGLVTDLRGRIADRNAVVALFSAV-DGKVPFAIGTTDAARGSGIKAGDLVKEVAPIV 865

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG+P +AQ  G +    D A+  +   +
Sbjct: 866 A-GRGGGKPDLAQGSGTDAAGIDAALVRLREVV 897


>gi|269121339|ref|YP_003309516.1| alanyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268615217|gb|ACZ09585.1| alanyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 870

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/912 (34%), Positives = 506/912 (55%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F++FF+   H+   S+SLIP +D TL+ T +GMVPFK+ F G+++  ++ +
Sbjct: 1   MTGNEIRKSFIDFFKSKEHKYFESASLIP-DDKTLLLTVAGMVPFKSFFLGEKEAPFKRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     NDL+NVG T RH TFFEMLGNFSFG YFK  AI  +W+ +T+   LD
Sbjct: 60  TTYQKCIRT----NDLENVGVTTRHQTFFEMLGNFSFGDYFKREAIFWSWEYITEILKLD 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+++V+ +D+EA+ +W K  G+  ++I+R+  +DN+W+    G CGPCSEI+ D GE
Sbjct: 116 SEKLWVSVFLDDDEAYDIWNKEVGVPEERIVRLGEDDNWWAAGPIGSCGPCSEIYIDLGE 175

Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G        + +RY+EIWNLVF ++ +        LP+ +IDTG GLER+A V+Q+
Sbjct: 176 KLGCGNLDCKPGCDCDRYLEIWNLVFTEWNRLEDGSLIPLPEKNIDTGAGLERIAAVMQK 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +N+D DLF  +I  +E++  ++         ++I DH+R+++FLI DG+LP+NEGRGY
Sbjct: 236 KESNFDTDLFIPIINETEKILEVERNNKTDKALKIIADHVRAAAFLIGDGVLPSNEGRGY 295

Query: 300 VLRRIMRRAMCYARLLG-----YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           +LR+++RRA   A  +        +  +  L+P +   M  AYPE+      IE+ ++ E
Sbjct: 296 ILRKLIRRAFGVASTIKERIFEKEDIFLYRLVPVVAEIMKEAYPEMESKIDYIEKVMKIE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F  TL  G+ +L   +  L KD  +    +++FKLYDT+G P ++ +++L       
Sbjct: 356 EEKFTVTLKNGVEILKEEVEKLKKDGKDKFPSEISFKLYDTYGFPFELTKEVL-EYEEIE 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +    F + LEEQ+ R+++    +     ++      EK+G T+FIGY+       +   
Sbjct: 415 VSEDEFLEKLEEQKIRSKSSKETISDMIKDEFIDEFYEKHGKTKFIGYEEKEAKAKILHI 474

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            K                                     E++FDQTPFYAE+GGQ+ DTG
Sbjct: 475 NKSHGSS------------------------------NYEIIFDQTPFYAESGGQVADTG 504

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRRQLSINHSATH 591
                 +         K + +++H   + +GI+      L L ID   R+    NH+ATH
Sbjct: 505 IINSQDLFEGKVVNVIKKKDVYIHEVELIKGIIPKIGDELTLKIDKFKRKDTQRNHTATH 564

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH AL  +LGSHV Q+GS +  + LRFD +H + ++  ++++IE   N I+ +N+ +  
Sbjct: 565 ILHKALREVLGSHVEQSGSLVDSERLRFDFSHYEAVSPEQIEAIERIANQIVLENIELAV 624

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E A A GA AL G KY D VRVV +        S  LCGGTHV STGEI L+ I 
Sbjct: 625 YNEDIETAKARGAMALFGDKYGDEVRVVEIP-----QFSIELCGGTHVKSTGEIGLINIE 679

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRI A TG ++   +   +E  K LA  LKV +  +   VE++ E Y+ L+
Sbjct: 680 SESGIASGVRRITATTGYKSLDFVNTLEESQKELAKSLKVEEKKIKEAVEKLKESYKDLE 739

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   +++    +++       +I     +       D++ELK ++D ++ K++SG+++
Sbjct: 740 KDYNDLQMKFLKYEINDLMGHIIEINGTKVLIKGFENKDNEELKEIVDRVKDKLKSGVVL 799

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +        A  L  V++DL  +  A D+ +  +K +  G GGGRP  AQ+GG  G K  
Sbjct: 800 IGA--NNGNAMFLAGVSKDLTGKIKAGDIVKEVSK-IANGNGGGRPDFAQAGGKAGEKVY 856

Query: 887 QAIAGVASFLKK 898
           +A+     +L++
Sbjct: 857 EALEHGKRYLEE 868


>gi|38233936|ref|NP_939703.1| alanyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|48428504|sp|P61699|SYA_CORDI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|38200197|emb|CAE49878.1| alanyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 888

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/919 (35%), Positives = 492/919 (53%), Gaps = 61/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F   F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRERFTNHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWQLLTGTVA 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
                LD  RL++TVY +D+EA ++W K  G+ +++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGLGLDPERLWVTVYLDDDEAAEIWNKKIGVPSERIQRLGMADNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228
           I++D+G    G   G   +  RY+EIWNLVFM+ E+       N +    LPK +IDTGM
Sbjct: 176 IYYDRGPEY-GAEGGPIADDNRYMEIWNLVFMENERGEGIGKDNFEIVGPLPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           G+ER+A +LQ   N Y+ DL + +I  +E++TG  Y  N+  N   RVI DH R+   LI
Sbjct: 235 GIERVACILQGVDNVYETDLLRPVINVAEELTGATYGTNDDDNIRFRVIADHSRTGMMLI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  A LLG     +   +  +   M  +YPE+   +  
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSAHLLGAKGKTLEKFMNTIMDTMTPSYPEIADNRER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E++ F KTL  G  L +     +    +++L+G  AFKL+DT+G P+D+  ++
Sbjct: 355 ILRVAITEEKAFLKTLASGTELFEDKADQVKNSGNKVLDGAAAFKLHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +DI  FN  + EQR+RA+A +     G  +   +        T F GYD L 
Sbjct: 415 AAEAGL-NVDIEGFNSLMAEQRARAKADNRAKKHGHADLSIYREWVDEHPTVFTGYDELT 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  ++  G  V E  +G++VEV+ + +P YAEA
Sbjct: 474 TD-----------------------SKVLGLLSAGNKVNEIKAGEEVEVILEASPLYAEA 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQLGD G  +     L++ DVQK  + ++VH A V +G L     +   +D   R    
Sbjct: 511 GGQLGDRGQILMGDTVLKVNDVQKIGKKLWVHKATVAQGGLSVGDVVTAQVDSDWRHAAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ THL+H AL  +LG    Q GS   P  LRFD  +++ +T  +L+ I++  N  + 
Sbjct: 571 QAHTGTHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTESLTPRQLEEIQNITNQAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y   VRV+ V    GG  S  LCGGTHV+ + +
Sbjct: 631 SDWDVNTIETSLEEAKAMGALALFGENYGSEVRVIEV----GGPFSIELCGGTHVTHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I+ ESS+ +G+RRIEA TG  +  +L  +   ++++AS +KV    +  R+  + 
Sbjct: 687 IGPVAILGESSVGSGVRRIEAYTGLDSFKYLAKEQALVENIASSMKVKPEELPDRIAALT 746

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV-DSKELKSVMDALQK 818
           ++ +  +   A  +    +   +       ++  V  ++  +S+V +  +L+S+   +++
Sbjct: 747 QKLKDAEKAIADMRSAQLMAQATGLVAGAIEVNGVKLVAQRVSDVENMGDLRSLAADIKQ 806

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++     ++ LVG     KA  ++  T+  +   + A   A++  + +  G GGG+P MA
Sbjct: 807 RLDDVPAVVALVGEDASGKAPFVVGATKAAVSAGYKANAYAKILGQYIE-GNGGGKPDMA 865

Query: 876 QSGGPNGNKADQAIAGVAS 894
           Q    N +  DQ IA V +
Sbjct: 866 QGSARNSSGFDQGIAAVKA 884


>gi|237714467|ref|ZP_04544948.1| alanyl-tRNA synthetase [Bacteroides sp. D1]
 gi|229445631|gb|EEO51422.1| alanyl-tRNA synthetase [Bacteroides sp. D1]
          Length = 871

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 482/918 (52%), Gaps = 74/918 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ V
Sbjct: 1   MTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L+
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKLN 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
              LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPCS
Sbjct: 121 PEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGMG
Sbjct: 179 EIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I 
Sbjct: 239 FERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKTL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + I
Sbjct: 359 IEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L   G+       FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD   
Sbjct: 419 LRENGMTVNIEE-FNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R++  +   +                             ++V D TPFYAE+
Sbjct: 471 YEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAES 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   +
Sbjct: 503 GGQVGDTGVLVSEFETIEVVDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAACA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I 
Sbjct: 560 ANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARIR 619

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++TG
Sbjct: 620 ANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAATG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + + 
Sbjct: 674 NIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLRIAIRKY 732

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E   L+       K K     E L  +  +I  +  +      + ++ +K++   L+ 
Sbjct: 733 LDENAGLKKQVEDFMKEKEAALKERLLKNVQEIHGIKVIKFCAP-LPAEVVKNIAFQLRG 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G +   K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 792 EITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 850

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+  V   
Sbjct: 851 GGKNADGLPAAVEKVLEL 868


>gi|225428201|ref|XP_002278951.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297744517|emb|CBI37779.3| unnamed protein product [Vitis vinifera]
          Length = 1006

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/929 (35%), Positives = 494/929 (53%), Gaps = 72/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++  SIR  FL+F+   GH++LPSSSL+P +DPT++ T +GM+ FK IF G+        
Sbjct: 107 TSGDSIRHRFLDFYASRGHKVLPSSSLVP-DDPTVLLTIAGMLQFKPIFLGKVPRQVPRA 165

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+C+R     ND++NVG+T+RHHTFFEMLGNFSFG YFK+ AI+ AW+L T E+ L 
Sbjct: 166 TTAQRCIRT----NDVENVGKTSRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEYGLP 221

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+I+VY++D+EA  +W K  G+  ++I R+   DNFW+   TGPCGPCSEI++D   
Sbjct: 222 ADRLWISVYEDDDEALAIWTKEVGVPVERIKRMGAEDNFWTSGVTGPCGPCSEIYYDFHP 281

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G       +  R+IE +NLVFMQ+ +++      L +M+IDTG+GLERMA +LQ+  
Sbjct: 282 E-RGYSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVP 340

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRG 298
           NNY+ DL   +I+ + ++  + Y   +     N +VI DHLR+  +LI+DG++P+N GRG
Sbjct: 341 NNYETDLIYPIIEKASELANVSYALADDHAKMNLKVIGDHLRAIVYLISDGVVPSNIGRG 400

Query: 299 YVLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           YV RR++RRA+   RLLG             +  +   +        P++      I E 
Sbjct: 401 YVARRLIRRAVRTGRLLGIKGDGRGNPEGAFLPTIAEKVIELSSQIDPDVKSRAPRILEE 460

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-------GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           L+ E+ RF +TL+RG  LLD +L++        G   IL+G   F LYDT+G P++I  +
Sbjct: 461 LKREELRFVQTLERGEKLLDEMLANALLNSNENGNGPILSGKDVFLLYDTYGFPVEITTE 520

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               RG  GID+  F   +E QR +++A    +           L E    T+F+GY+ L
Sbjct: 521 AAEERG-VGIDMNGFEIEMENQRRQSQAAHNAVKLAVGNSA--DLTENISDTEFLGYETL 577

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                     ++++ ++  G  V +   G  VE+  ++TPFYAE
Sbjct: 578 -----------------------STKAVIEGLLVNGNPVIQVSEGSDVEIFLNRTPFYAE 614

Query: 524 AGGQLGDTGCAI------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           +GGQ+GD G              ++I DVQK    IFVH   ++ G++     +   +D 
Sbjct: 615 SGGQIGDHGFLYVNEDRNQKNAVVEIKDVQKSLGNIFVHKGTIKEGVVEVGKEVEAAVDA 674

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R++  I+H+ATHLL  AL  ++G   SQ GS +  D LRFD    +P+   EL  IE+
Sbjct: 675 NLRQRAKIHHTATHLLQAALKKVIGDETSQAGSLVAFDRLRFDFNFHRPLQEKELVEIEE 734

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +N  I     + T++M   DA  +GA A+ G KY ++VRVV V        S  LCGGT
Sbjct: 735 LINGWIGDATLLQTKVMPLADAKRAGAIAMFGEKYGEQVRVVEVPG-----VSMELCGGT 789

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HVS+T EI    I+SE  I +GIRRIEA+ G     ++  +D  ++ L S LKV    V 
Sbjct: 790 HVSNTCEIRGFKIISEQGIASGIRRIEAVAGDAFIEYVNARDNHMRQLCSTLKVKAEEVT 849

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--------CHKIADVNFMSHIISEVDSKEL 809
            RVE + EE R  +   +  + +  V   S              +  +   + ++D+  L
Sbjct: 850 TRVEALLEELRMTRNEVSAVRAKAAVYKASVMAGNAFPVGTSKKIRVLVESMDDIDADSL 909

Query: 810 KSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
           KS  + L   +Q    ++L     E+K S++   T  ++D    A       AK+ GGGG
Sbjct: 910 KSAAEYLIDTLQDPAAVILGSCPSEEKVSLVAAFTPGVVDLGIQAGKFIGPIAKLCGGGG 969

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            GGRP+ AQ+GG        A+      L
Sbjct: 970 -GGRPNFAQAGGRKPENLSGALEKAREEL 997


>gi|307298258|ref|ZP_07578062.1| alanyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916344|gb|EFN46727.1| alanyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 869

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/905 (37%), Positives = 513/905 (56%), Gaps = 49/905 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++L+FF+   H+ L S+SLIP NDP LMFT +GMVPFK IF G+ +P Y+ V
Sbjct: 4   MTGAEIRESYLKFFESKDHKRLQSASLIP-NDPQLMFTVAGMVPFKPIFWGKIEPTYRRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR     ND++NVGRT RH TFFEMLGNFSFG YFK   I+ AW+ +T+  +L 
Sbjct: 63  TTCQKCVRT----NDIENVGRTPRHQTFFEMLGNFSFGDYFKRETIKWAWEFVTEYLNLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + RL+++VY +D+EAF +W+   G+   KIIR+   DN+W     +GPCGP SEIF D+G
Sbjct: 119 ENRLWVSVYLDDDEAFSIWRDEVGIPEKKIIRLGKKDNWWGPAGPSGPCGPDSEIFIDRG 178

Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C        + +  R++E WNLVF +F Q  +     L + +IDTG GLER A++L
Sbjct: 179 HGDNCPDPENCSPACDCGRFLEFWNLVFTEFNQDEEGNLTYLERKNIDTGFGLERAASIL 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+  +N+D DLF  +I+  E++ G+KY+    + ++ +VI DH RS +F+++DGILP+NE
Sbjct: 239 QDVDSNFDTDLFIPIIKKIEEILGIKYKEKPGSDISIKVIADHARSVAFMVSDGILPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ ++ LLGY+ P +  ++  +   MG+ YPEL Q     +E    E+
Sbjct: 299 GRGYVLRRILRRAVRHSSLLGYSSPFLYRIVETVADHMGNVYPELRQRLSFTQEITLKEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  TL  G   L  V   L   + L+G   F L+DT+G PL+++++I+   G+  +D 
Sbjct: 359 ERFLSTLVNGEKRLKSV---LVDKKELSGPELFMLHDTYGFPLELVEEIVAGTGVT-LDK 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             + + +  QR RAR         +  + + ++    G ++F GY               
Sbjct: 415 EGYEREMALQRERAREAMGDREYLSNVEAYSTIFPVTGNSKFTGYSRFED---------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AI+++G+ VE    G+  +++F++TPFY E GGQ+ DTG   
Sbjct: 465 -------------KSKIVAILKEGDAVETLSKGETGDLIFEKTPFYPERGGQVTDTGLIR 511

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++  V    + + VH A VE G L       L++D   R+ ++ NH+ATHLLH 
Sbjct: 512 TDNASAKVERVFIPYQEMIVHRAFVEEGALHVGDKAWLSVDEDRRKAITRNHTATHLLHA 571

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q+GS + PD LRFD +H +P+++ EL  +E+ VN+ I +   V     +
Sbjct: 572 ALRKVLGEHVHQSGSLVQPDRLRFDFSHFQPLSTDELNEVEEIVNEEILKAKVVDKAEKS 631

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++       AL   KY D+VRV+SVE       S  LCGGTHV +TGEI L  I+S++S
Sbjct: 632 FDEIKGQDVMALFEEKYGDKVRVISVEG-----FSRELCGGTHVDNTGEIGLFKILSDTS 686

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG RRIEAITG+ + ++      + K++   L+V +  ++ R++ +  E +       
Sbjct: 687 VAAGTRRIEAITGKTSLNYFRNLFNRQKTIREVLEVPEDLIIQRLQGVLNELKSGGQEIK 746

Query: 776 KRKLQLNVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           + K +L   D         +     +   +    S  L++  D L  K   GI+++    
Sbjct: 747 RLKEKLLSGDSLMKDKKMIVNGTKLLIRRVENAPSSALRNGADVLLSKEGGGIVIIFN-E 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E   S ++ V + L D+FNA ++AR  A+ LGGGG GGRP  AQ+GG + +K    I  
Sbjct: 806 LEDSVSFVVKVEKKLTDKFNAGEIARKIARDLGGGG-GGRPDFAQAGGKDLSKLQTLIER 864

Query: 892 VASFL 896
           +  +L
Sbjct: 865 IDEYL 869


>gi|306836213|ref|ZP_07469197.1| alanine--tRNA ligase [Corynebacterium accolens ATCC 49726]
 gi|304567934|gb|EFM43515.1| alanine--tRNA ligase [Corynebacterium accolens ATCC 49726]
          Length = 894

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/927 (34%), Positives = 491/927 (52%), Gaps = 66/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F + F  +GHE++PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MKTHEIRERFTQHFVNSGHEVVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFSQG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW+LLTK+  
Sbjct: 60  LATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISNAWNLLTKDVE 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 DGGFGLDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGVPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGM 228
           I++D+G    G   G   +  RY+EIWNLVFMQ E+     K +  I+   PK +IDTG+
Sbjct: 176 IYYDRGSEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGTGKGDFEIVGELPKKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSF 284
           G+ER+A +LQ   N Y+ DL + +I  +E++TG  Y       N +  RV+ DH R+   
Sbjct: 235 GIERVACLLQGVDNVYETDLLRPVIDVAEELTGATYGEKATQENNIRFRVVADHSRTGMM 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NEGRGY+LRR++RR +  A+LLG   P M   +  +   M  +YPE+   +
Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSAKLLGAEGPTMERFMNTVMDTMTPSYPEIADNR 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE------ILNGDVAFKLYDTHGLPL 398
             I     +E++ F KTL+ G  L D  +  L          +L+GD AF+L+DT+G P+
Sbjct: 355 ERILRVAINEEKAFLKTLESGTKLFDEAVDDLRSTHRAKTQKVLSGDKAFELHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++    GL  +D+  FN A+ EQR RA+A +     G T+   +        T F 
Sbjct: 415 DLTLEMAQEAGL-DVDMDGFNAAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFT 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY+ L                          + V  +V+ G+ V E   G +VEV+ D +
Sbjct: 474 GYEELVSG-----------------------ANVIGLVKDGQKVNEVHEGDEVEVILDHS 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           P YAE+GGQ+ D G        L++ DVQK  + ++VH A V  G L   MS+  ++D +
Sbjct: 511 PLYAESGGQMADRGRISAGESLLEVNDVQKIGKKLWVHKASVTAGGLDLGMSVEASVDEK 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R   +  HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++  +++ I   
Sbjct: 571 WRHGATQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSQEQMEEIALI 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  N+ V T   + E+A A GA AL G  Y ++VRVV +    GG  S  LCGGTH
Sbjct: 631 TNQAIDSNMAVNTIETSLEEAKAMGAMALFGENYGNQVRVVEI----GGPFSIELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V S+ EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV    +  
Sbjct: 687 VGSSAEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGVSRELKVQSEELPE 746

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSV 812
           R+ ++ E  +  +      +             S  ++  +  ++  +       +L++V
Sbjct: 747 RISQLSERLKAAEKEIEVLRKAQLTARASEFIDSATEVNGIKTITLQLPDGTSGGDLRTV 806

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    +I+L  + K K   +     + + +   A D+ +   + +  G GGG
Sbjct: 807 ATDIRNRMKDTAAVIVLGAVDKGKFPFIAAATGKAVDEGVKAGDIVKRLGEYVN-GRGGG 865

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
           +P MAQ  G     A +    V   L+
Sbjct: 866 KPDMAQGSGTAPEGAQRGFEAVKDLLQ 892


>gi|255007587|ref|ZP_05279713.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313145280|ref|ZP_07807473.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313134047|gb|EFR51407.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 872

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M      R +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D EA  +W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASIWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI++  Q+ G +Y     N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKSIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKATGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+    +  F+  +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTVNTVE-FDAEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  ++   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVNTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ +E  VN  I
Sbjct: 560 AANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNAP-DLGVAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  +I  +  +   +  + ++ +K++   L+
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKVIKFCLP-MPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 851 AGGKNPDGLNAAVEKVLEL 869


>gi|299148308|ref|ZP_07041370.1| alanine--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|298513069|gb|EFI36956.1| alanine--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 872

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+       FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTVNIEE-FNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKENNLPIHI---TKKLPDHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLGIAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  +I  +  +      + ++ +K++   L+
Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVVKFCAP-LPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 851 AGGKNTDGLPAAVEKVLEL 869


>gi|160886801|ref|ZP_02067804.1| hypothetical protein BACOVA_04814 [Bacteroides ovatus ATCC 8483]
 gi|156107212|gb|EDO08957.1| hypothetical protein BACOVA_04814 [Bacteroides ovatus ATCC 8483]
          Length = 872

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+       FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTVNIEE-FNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKENNLPIHI---TKKLPDHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNAP-DLGIAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  +I  +  +      + ++ +K++   L+
Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVVKFCAP-LPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 851 AGGKNTDGLPAAVEKVLEL 869


>gi|237719250|ref|ZP_04549731.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|293372256|ref|ZP_06618641.1| alanine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|229451629|gb|EEO57420.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|292632698|gb|EFF51291.1| alanine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
          Length = 872

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+       FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTVNIEE-FNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLGIAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  +I  +  +      + ++ +K++   L+
Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVVKFCAP-LPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 851 AGGKNTDGLPAAVEKVLEL 869


>gi|139436944|ref|ZP_01771104.1| Hypothetical protein COLAER_00077 [Collinsella aerofaciens ATCC
           25986]
 gi|133776591|gb|EBA40411.1| Hypothetical protein COLAER_00077 [Collinsella aerofaciens ATCC
           25986]
          Length = 878

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/893 (39%), Positives = 524/893 (58%), Gaps = 45/893 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR+ FL FF++ G +L PSSSL+P +DP+L+  N+GM  FK  + G++       
Sbjct: 1   MTTAEIRSKFLNFFEERGLKLYPSSSLVP-DDPSLLLANAGMNQFKEYYQGKKTMKEIGA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVR     ND+D +G   RH +FFEMLG+FSFGG  K++A   A++L+TKEF L 
Sbjct: 60  ISCQKCVRT----NDIDCIGEDGRHLSFFEMLGDFSFGGVSKQQACAWAFELITKEFKLP 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY TV+ ED+E   +W+ + G++ D I R+  +DNFW+   TGPCGPCSEI+FD GE
Sbjct: 116 LDRLYFTVFTEDDETHDVWRSL-GVAEDHISRLGEDDNFWAAGPTGPCGPCSEIYFDMGE 174

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P      + +R++E WNLVF Q+++Q       LP  ++DTGMGLERMA ++Q 
Sbjct: 175 EVGCGSPDCKPGCDCDRFLEFWNLVFTQYDRQEDGSMPELPHRNLDTGMGLERMAAIMQH 234

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFLIADGILPANE 295
           KT NYD DL +HLI+  E+++G  Y+ ++      + R+I DH R+  F+I+DGILP NE
Sbjct: 235 KTANYDGDLMQHLIKLGEEISGKTYDADDYSGASRSLRIIADHSRAVDFMISDGILPGNE 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GR YVLRR++RRA+ + RLLG     +   +  +  +MG AYPEL++   L++  + SE+
Sbjct: 295 GREYVLRRLLRRAVFHGRLLGIEGAFLTKFIDEVNAQMGEAYPELLKNVALVKGIVASEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  TLD G V LD  L+ L +   L GDVAFKL+DT G P+D+  +I    G   +D+
Sbjct: 355 ERFSTTLDNGRVYLDEALAALAEGAALPGDVAFKLHDTFGFPIDLTVEIAGTAGH-DVDM 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+Q++RARA++ G   G+   +W  L +K  A++F GYD              
Sbjct: 414 DGFTACMEDQKARARANAKGDAWGSFNDVWVELSDKVAASEFDGYDNDVIEG-------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V AIV+ GE VE A +G+ VEVV D+TPFYAE GGQ GD G  +
Sbjct: 466 --------------AKVVAIVRNGESVESAAAGEDVEVVLDRTPFYAEMGGQQGDAGK-L 510

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +      K   G++ H A V  G L    ++   +D + R  L  NH+ATHLL  
Sbjct: 511 SAEGVVLTVADTKNHNGLYAHVAHVADGTLTVGAAVTAALDAERRGFLRRNHTATHLLDA 570

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HVSQ GS +TP+ LRFD TH + ++S +LK++ED VN  I  + PVVTR+M 
Sbjct: 571 ALKQVLGEHVSQAGSLVTPEHLRFDFTHFEALSSEQLKAVEDLVNQQIFASKPVVTRVMG 630

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A+GA AL G KY D VRVVSV  ED    S  LCGGTH ++T EI L  I+SESS
Sbjct: 631 IDEAKAAGAVALFGEKYGDVVRVVSVGAED-QPFSRELCGGTHAANTAEIGLFKIISESS 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
             + +RRIEA+T + A  ++  +   + + A+ LK     V  R+E +  E R+      
Sbjct: 690 TGSNVRRIEAVTSKGALDYMADRLALVDAAATALKCRVDEVPARMENLQAELRETSNKLK 749

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVG 829
           K     + + +S       ++     +   +  +++ +L++V D + +K+      ++  
Sbjct: 750 KALTGGSSDAISSAIEGAVELDGYKLVVAELQGLEAADLRNVWDTVHQKVAGPVACVVAS 809

Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           ++++   ++L   ++D +   F+A ++ +  A ++  G GGGRP+MAQ+GG N
Sbjct: 810 VTEKGTPALLAAGSDDAVKAGFHAGNVIKQIAGLV-DGRGGGRPNMAQAGGKN 861


>gi|72162469|ref|YP_290126.1| alanyl-tRNA synthetase [Thermobifida fusca YX]
 gi|83305862|sp|Q47N66|SYA_THEFY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71916201|gb|AAZ56103.1| alanyl-tRNA synthetase [Thermobifida fusca YX]
          Length = 889

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/922 (35%), Positives = 500/922 (54%), Gaps = 63/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL FF+KNGH ++PS+SLI   DPTL+  N+GMVPFK  F GQ  P Y   
Sbjct: 1   MKSAEIARRFLAFFEKNGHTVVPSASLIAE-DPTLLLVNAGMVPFKPYFLGQRTPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D+D VG+T RH +FF+MLGNFSFG YFKE+AI LAW+LLT      
Sbjct: 60  TSVQKCVRTI----DIDEVGKTTRHASFFQMLGNFSFGDYFKEKAIPLAWELLTTSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D  RL++TVY +D+EA  +W++  GL  ++I R    DNFWSM   GPCGPCSEI+
Sbjct: 116 GFGFDPERLWVTVYLDDDEAATIWREKVGLPEERIQRRGKADNFWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           FD+G    G   G   + +RY+E+WNLVFMQFE+     +   P        +IDTGMGL
Sbjct: 176 FDRGPEY-GAEGGPVADEDRYLEVWNLVFMQFERGEGSGKEDYPILGELPSKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ERMA +LQ   N Y+ D    +++ + ++TG  Y  N    V+ RVI DH+R+++ L+AD
Sbjct: 235 ERMAAILQGVDNIYETDTLGRILRRAAELTGTTYGENERADVSLRVIADHVRTATMLVAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP-ALCTEMGSAYPELIQAKLLI 347
           G+ P NE RGYVLRRI+RR++   RLL   E   MH L       MG  YPEL      I
Sbjct: 295 GVRPGNEKRGYVLRRILRRSIRNLRLLSGDESFHMHDLTAVAIDAMGDQYPELRADADKI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
              + +E++ F  TL  G  L +  +    +    + +G  AF+L+DT+G P+D+  ++ 
Sbjct: 355 HSIIDAEEKNFADTLRAGTTLFNRAVRRTKETGGTVFSGADAFQLHDTYGFPIDLTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464
              GL  +D  +F+Q ++ QR  A+  +     G  +  ++ +L E  G T+F+GY    
Sbjct: 415 AEHGLK-VDEETFHQLMQRQRETAKRDAQAKKLGNADISVYGNLLETGGPTEFLGYTDSE 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  I+  GE    A  G +VE+V D+TPFYAE+
Sbjct: 474 S-----------------------EARVLGIIVNGESTGAARKGDQVELVLDRTPFYAES 510

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G   +     + + DVQK  +G+FVH   V  G +  + ++   ID   R  +
Sbjct: 511 GGQLADKGTITVDGRGVVDVEDVQKPIQGLFVHRGTVREGEVVVDDTVHAAIDTGRRASV 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           S +HSATHL+H AL   LG    Q GS   P  LRFD T  KP+ + E+  +E+ VN+++
Sbjct: 571 SRSHSATHLIHSALRNTLGPSAGQAGSENQPGRLRFDFTSDKPLDATEIAQVEEEVNEVL 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           A+N+ V       ++A+  GA A+ G KY +RVRVV +       +S  LCGGTHV++TG
Sbjct: 631 ARNIEVQYLETTLDEALRMGALAMFGEKYGNRVRVVDMTE-----YSRELCGGTHVAATG 685

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ L+ ++ ESS+ +G+RR+EA+ G  A   +  +   +  L+  LK  +  +  R++ +
Sbjct: 686 QLGLVKVLGESSVGSGVRRVEALVGLDALRRVSTESALVGQLSEQLKAPREELPQRIDSL 745

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE-VDSKELKSVMDALQ 817
               R  +    + +    ++       S     +   ++H + +   + +++ +   ++
Sbjct: 746 VSRLRAAEKEIERLRAAQVLQAAGKLAESARDHGNSRVVTHRVEDGTTADDMRKLALDVR 805

Query: 818 KKIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
            ++      ++ + G+  ++   V+ +  E       A +L  ++A+ LGGGG GGRP +
Sbjct: 806 GRLGEDRPAVVAIAGVPSDRPVVVVAINKEAQQAGLKAGELVGVAARALGGGG-GGRPDI 864

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ GG +    D A+  V   +
Sbjct: 865 AQGGGSDVTAIDTALRLVEQRV 886


>gi|317133026|ref|YP_004092340.1| alanyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315471005|gb|ADU27609.1| alanyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 874

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/904 (38%), Positives = 519/904 (57%), Gaps = 49/904 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L FF+  GH  LPS  L+P  D +L+  NSGM P K  F GQ  P  + VTT
Sbjct: 6   LNELREKYLAFFESKGHLRLPSFPLVPQGDNSLLLINSGMAPMKKYFLGQVTPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR      D+++VG+ +RH T+FEMLGNFSFG YFK  A    W+ +TK   L + 
Sbjct: 66  CQKCVRT----PDIEHVGKDDRHGTYFEMLGNFSFGDYFKHEACAWGWEFVTKVVKLPED 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           ++Y+T+Y +D+EAF +W K  G+    I+R+   DNFW    +GPCGPCSEI+FD+GE  
Sbjct: 122 KVYVTIYLDDDEAFDIWTKEVGVDPSHIVRLGKEDNFWEHG-SGPCGPCSEIYFDRGEEH 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +RY+E WN+VF Q++   K     + K +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPTCGVGCDCDRYVEFWNIVFSQYDSDGKGTYTPMAKPNIDTGMGLERLACVMQDVN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  +++++ + ++ G+ Y  +    ++ RVI DH+RS+ FL+ DG+LP+NEGRGY
Sbjct: 241 NLFEVDTVQNIMKHTGRIAGVTYGEDAKADISLRVITDHIRSTVFLVGDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG  EP +  +   +  E  +AYP+L++ +  I+  +++E+ERF 
Sbjct: 301 VLRRLLRRAARHGRLLGIREPFLYQVAETVVHENAAAYPDLVEKQSYIQSVIKAEEERFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            T+D+GL LL+  ++ L    +L+GD AFKLYDT G PLD+  DIL  RG + +D   F 
Sbjct: 361 ATIDQGLQLLEQRIAALPAGGVLSGDDAFKLYDTFGFPLDLTSDILEERGFS-VDADGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + ++EQR+RARA          E    S  E    T+F+GY+ L                
Sbjct: 420 KRMKEQRARARAARAAGMGAAWED---SKDEDTPETRFVGYEKL---------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V AI+ +GE V  A  G  V VV D TPFYAE+GGQ+GDTG     G+
Sbjct: 461 -------SCAAKVAAIITEGERVGLADQGSTVSVVLDTTPFYAESGGQVGDTGLLTAAGV 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +Q+TD +K   G F+H   V  G L    ++   +D   RR +  NHSA HLL  AL +
Sbjct: 514 CVQVTDCRKSPTGRFLHIGKVVEGSLSAGETMQAQVDAPRRRAVMRNHSAAHLLQAALRS 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV Q G  +    +RFD TH   +T+ EL ++E  VN  I   LPVVTR M  E+A
Sbjct: 574 VLGTHVQQAGQLVNDRHVRFDFTHFAALTADELAAVEKEVNTAILSALPVVTRTMAVEEA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             +GA AL   KY D VRVV +     G  S  LCGGTHV +TG+I L  IVSE+S+ AG
Sbjct: 634 KKTGAMALFSEKYGDVVRVVQM-----GDVSKELCGGTHVDNTGKIGLFRIVSETSVSAG 688

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK- 778
           +RRIEA+TG      L GQD  +K  A  LK +   +  R  ++  E R+   +    + 
Sbjct: 689 VRRIEAVTGTNVLELLRGQDIAIKEAAQVLKAAPAELPQRAAQVAGELREKDRVIETLRG 748

Query: 779 ----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
               +Q++    +  ++     ++  + E+D   L+ + D +++     +I+L G++   
Sbjct: 749 RIAAMQMDALLAAAKEVGVFRLITASLKEMDVDGLRMITDRVRESDPQAVIVLAGMA-GG 807

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K        ++ +    +A +L R +AK+ GGGG GGRP  A +GG + ++  +A+  V 
Sbjct: 808 KVVFAAACGKEAVKNGAHAGNLLRTAAKITGGGG-GGRPDSATAGGRDASRVAEALQSVE 866

Query: 894 SFLK 897
           + L+
Sbjct: 867 AGLE 870


>gi|60680248|ref|YP_210392.1| alanyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|81316682|sp|Q5LHE6|SYA_BACFN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|60491682|emb|CAH06434.1| putative alanyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
          Length = 872

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/919 (36%), Positives = 483/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M      R +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI+A  Q+ G +Y     N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +++  F+  +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNVEEFDAEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ +E  VN  I
Sbjct: 560 AANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNTP-DLGVAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  +I  +  +   +  + ++ +K++   L+
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKVIKFCLP-MPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 851 AGGKNPDGLNAAVEKVLEL 869


>gi|325954950|ref|YP_004238610.1| alanyl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323437568|gb|ADX68032.1| alanyl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 869

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/919 (35%), Positives = 492/919 (53%), Gaps = 73/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL FFQ+  H ++ S+ ++  +DPTLMF NSGM  FK  F G   P    +
Sbjct: 1   MKSKDIRKEFLNFFQQRNHLIVDSAPIVLKDDPTLMFNNSGMAQFKEYFLGNATPKSNRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD+VG+   HHT FEMLGN+SFG YFK+ AI  AW+LLT  + + 
Sbjct: 61  ADTQKCLRVSGKHNDLDDVGKDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTGTYGIG 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + ++Y+TV++ DE        EA  LWK+   ++ D+I+     DNFW M + GPCGPCS
Sbjct: 121 KDQIYVTVFEGDEKDGTQLDQEALDLWKE--HIAEDRILLGNKKDNFWEMGDVGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +++  + IEIWNLVFMQ++++       LP   IDTGMG
Sbjct: 179 EIHVDIRPEEERLAVDGKSLVNQDHPQVIEIWNLVFMQYQRRADGSLEPLPAKHIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+A VLQ KT+NYD D+F+ LI+  E+++G+ Y  N    +  RV+VDHLR+ SF IA
Sbjct: 239 FERLAMVLQGKTSNYDTDVFRPLIKKLEKISGITYGDNEITDIAIRVVVDHLRAVSFAIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RRA+ Y    L   EP +  L P L  EMG  +PELI+ + +
Sbjct: 299 DGQLPSNTGAGYVIRRILRRAISYGYRFLNLKEPFIYLLFPILKDEMGDFFPELIKQESI 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +R E+  F +T++ GL  L+ ++      +++ G V F+LYDT+G P D +  I+ 
Sbjct: 359 VTGVIREEESSFLRTIEHGLNRLNQIIDQYQDTKVVPGHVVFELYDTYGFPAD-LSRIVV 417

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 ID   F   + +Q++R++           E   + +  +    +F+GYD+L   
Sbjct: 418 EDHNFTIDEDGFEVEMSKQKARSKKA------TALETDDWVIVRENANEEFVGYDILSTE 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   RKV                                G+  ++V D+TPFYAE+GG
Sbjct: 472 VQITRYRKVKN----------------------------KKGEFYQLVLDKTPFYAESGG 503

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GDTG  I    ++++ + +K+   I      VE+     E +    +D   R +   N
Sbjct: 504 QIGDTGLLISANEQIEVLNTKKENNLIIH---FVEQLPSNIEATFQAEVDSITRNETQKN 560

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL T+LG+HV Q GS + PD LRFD +H   +T+ E+  +E  VND I  +
Sbjct: 561 HSATHLLHEALRTVLGTHVEQKGSYVGPDYLRFDFSHFGKMTTEEIAEVEKIVNDRIVAS 620

Query: 647 LP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +P    R +  ++A++ GA AL G KY D VR++          S  LCGGTHV +T +I
Sbjct: 621 IPLDEKRNIPFDEAVSQGAMALFGEKYGDYVRLIKFGS------SVELCGGTHVKNTSDI 674

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  I SESS  AGIRRIEAIT   A   L   ++  +S+   LK    +    V+++ +
Sbjct: 675 RLFKITSESSTAAGIRRIEAITSNAAIDVLKEAEKNYQSVLDTLKTK-SDAKKAVQQLLD 733

Query: 766 EYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E  +L+    K   Q    +          I  + F++   ++++++  K     L  ++
Sbjct: 734 ENAQLKKQVEKFVAQQAKAEKENWKQQVKNINGIQFLAIK-TDLNTQSAKQNAIDLTNEL 792

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +  +++       K S+ I + ++L+   + NA  + R  AK +  G GGG+  +A +G
Sbjct: 793 DNAFVVVATKDA-VKPSITISIAKNLVEEKQLNAGQIVREIAKNI-QGSGGGQAFLATAG 850

Query: 879 GPNGNKADQAIAGVASFLK 897
           G +    D+A+A   +F++
Sbjct: 851 GKDVTGIDKALAQAETFVQ 869


>gi|116333833|ref|YP_795360.1| alanyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
 gi|122269480|sp|Q03R43|SYA_LACBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116099180|gb|ABJ64329.1| alanyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
          Length = 879

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/919 (34%), Positives = 483/919 (52%), Gaps = 63/919 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S IR  +L+FF+  GH + PS+SL+P +DP+L++ NSG+   K  F+GQ  P  
Sbjct: 1   MKELTSSQIRQMYLDFFKSKGHTIEPSASLVPKDDPSLLWINSGVATMKKYFSGQVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  AW+LLT   
Sbjct: 61  PRLTSSQKSIRT----NDIENVGKTARHHTLFEMLGNFSVGDYFKKEAIAWAWELLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D  +LY+TVY +D +A   W +  G++ D I  I   DNFW + E GP GP SEIF
Sbjct: 117 WFGWDPDKLYMTVYPKDTDAKDAW-EAVGVAPDHI--IAVEDNFWDIGE-GPSGPDSEIF 172

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+E+WN+VF QF  +       LP+ +IDTGMGLE
Sbjct: 173 YDRGEAFNNLAADDPENYPGGENERYLEVWNIVFSQFNHEPDGTYKPLPRKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++ Q    N++ DLF  LI+ +  ++  K+      + ++ +VI DH R+ +F I D
Sbjct: 233 RVVSIFQNAKTNFETDLFMPLIEKTAALSAGKHYGANAEDDISFKVIADHARAITFAIGD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP NEGRGYV+RR++RRA+   + LG     +  L+P +   M + YPE+++    I 
Sbjct: 293 GALPGNEGRGYVIRRLIRRAIVNGQKLGIEGAFLDQLVPVVGQIMQAYYPEVLEQSDYIA 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +RSE++RFG+TL  GL LL+ +++ L +     + G  AFKLYDT+G P+++ ++   
Sbjct: 353 KVVRSEEDRFGETLTDGLNLLNSLIADLKQQGGNQIAGADAFKLYDTYGFPVELTEEYAD 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  +D   F   +++Q+ RAR       +   +     L      ++++GY  L   
Sbjct: 413 DQGIT-VDEAGFKAEMQKQKDRARNARGKQKAMGLQHDL--LINVKTPSEYVGYTQL--- 466

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 +S +  +V   E+V+   SG   E +FD TPFYAE GG
Sbjct: 467 --------------------ATTSKLTVLVAGDELVDHVTSG-TAEAMFDVTPFYAEMGG 505

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   +       + A      H +     + T  +  L +D     ++  
Sbjct: 506 QVADKGDILDEAGHVVAHVADVQHAPNGQNLHTLTVVAPMETGATYQLKVDTIFHSKVEK 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  + G H  Q GS +  D LRFD TH   +  A+L   E  VN  I +
Sbjct: 566 NHTATHLLDKALREVFGEHTQQAGSLVEGDYLRFDFTHFGQVDPADLAKAEALVNQKIFE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LPV T   + E A   GA AL   KY   VRVVS      G   +  CGG HV +T EI
Sbjct: 626 ELPVTTVETDIESAKKMGAIALFSEKYGKVVRVVS-----AGDFVTEFCGGNHVKNTNEI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  I SES + AG+RRIEA+T   A ++L   DE L ++ + LKV+Q   +  +V+ + 
Sbjct: 681 GLFKITSESGVGAGVRRIEAVTSAAAYAYLHDHDEILNAVGADLKVTQVDEIEQKVQALQ 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + + L+   A  + +L  ++            +   +S  +      +L+++ D  + +
Sbjct: 741 AQVKALEQQQATLEGKLASQEAGAVFDHVTTAGNYQLISGTVQVSKMDQLRALADTWRDQ 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L G     KA++++ V+ D   +  A DL +  +  + GG GGGRP++AQ+GG
Sbjct: 801 ALSDVLVL-GAEVNGKANLIVAVSADKQKQVKAGDLIKAISPKINGG-GGGRPNLAQAGG 858

Query: 880 PNGNKADQAIAGVASFLKK 898
            N      A+   A +L +
Sbjct: 859 KNPAGLPDAMTAAADWLAE 877


>gi|288871667|ref|ZP_06118467.2| alanine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288862560|gb|EFC94858.1| alanine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 813

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/848 (38%), Positives = 475/848 (56%), Gaps = 46/848 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT QKC+R
Sbjct: 1   MFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTTCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  RLY +V
Sbjct: 61  TG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIRWSWEFLTEVVGLDPDRLYPSV 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y ED+EAF +W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE    G PG
Sbjct: 117 YLEDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPG 175

Query: 190 S--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                E +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  + +D+D
Sbjct: 176 CTVGCECDRYMEVWNNVFTQFENDGHGNYEELAQKNIDTGMGLERLAVVVQDVDSIFDVD 235

Query: 248 LFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             K L+    ++   +Y+ +    V+ R+I DH+RS +F+I+DGI+P+NEGRGYVLRR++
Sbjct: 236 TIKALLNRVAELARTEYQKDASVDVSLRLITDHVRSCTFMISDGIMPSNEGRGYVLRRLL 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + RLLG     +  L   +       YPEL + K +I + L  E+++F +T+D+G
Sbjct: 296 RRAARHGRLLGIEGRFLAELSRTVIELSKDGYPELEEKKAMILKVLTEEEDKFNRTIDQG 355

Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L  +   +      +L+G+ AFKLYDT+G PLD+ ++IL  +  + ID   F +A++
Sbjct: 356 LAILSEMEEQMSAAGKTVLSGEDAFKLYDTYGFPLDLTREILEEKHFS-IDEDGFKKAMQ 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR +ARA          +   +   +    T+F+GYD L                    
Sbjct: 415 EQREKARAARKTTNYMGADVTVYQSIDPALTTEFVGYDRL-------------------- 454

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S + A+  + ++VE    G+   +V ++T FY   GGQ GD G  +       +
Sbjct: 455 ---VCDSKITALTTETDLVEALTDGETGTIVTEETCFYGTMGGQQGDKGVIVSANGEFSV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D      G   H   +++G+ +    + L +  ++R     NHSATHLL  AL T+LG 
Sbjct: 512 EDTIHLQGGKVGHVGKMKKGMFQIGDVVTLKVCEESRMNTGKNHSATHLLQKALRTVLGE 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS +  D LRFD TH   +T  E+K +E  VN+ I + L V T +M+ ++A  SG
Sbjct: 572 HVEQAGSYVDEDRLRFDFTHFSAMTPEEIKKVECLVNEKIKEALNVKTEVMSLDEAKKSG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY + VRVV +     G  S+ LCGGTH+S+TG I    I+SE+ I AG+RRI
Sbjct: 632 AMALFGEKYGENVRVVKM-----GDFSTELCGGTHISNTGVIGSFKILSETGIAAGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG     +    + +L   A   K +   +  R+E + EE + L   + K K +L  
Sbjct: 687 EALTGDGLMKYYQEAETELHEAAKAAKATPQTLAARIEAMLEEIKTLHSENEKLKSRLAK 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + L        +I  V  ++    +VD   L+++ D L+ K+  G+I+L  +  + K ++
Sbjct: 747 DSLGDVMDQVKEIGGVKVLAAKADDVDMNGLRNLGDQLKDKLGEGVIVLASVL-DGKVNL 805

Query: 839 LIVVTEDL 846
           +   TE+ 
Sbjct: 806 MATATEEA 813


>gi|29349403|ref|NP_812906.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|41018213|sp|Q8A0M6|SYA_BACTN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29341312|gb|AAO79100.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 872

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+       FN  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENGMTVNIEE-FNAEMQQQKQRARNA-----AAIETGDWVTLRE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDCTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDSALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY +RVRV+          S   CGG HV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFGS------SIEFCGGIHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + +  L S    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAP-DLGIAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       K K     E L  +  +I  +  +      + ++ +K++   L+
Sbjct: 733 YIEENAGLKKQVEDYMKEKEASLKERLLKNIQEIHGIKVIKFCAP-LPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + AI  V   
Sbjct: 851 AGGKNTDGLNAAIEKVLEL 869


>gi|227503536|ref|ZP_03933585.1| alanyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|227075572|gb|EEI13535.1| alanyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
          Length = 896

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/925 (34%), Positives = 488/925 (52%), Gaps = 66/925 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61
              IR  F + F  +GHE++PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     
Sbjct: 5   THEIRERFTQHFVNSGHEVVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFSQGLA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW+LLTK+    
Sbjct: 64  TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISNAWNLLTKDVADG 119

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 120 GFGLDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGVPGPCGPCSEIY 179

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G   +  RY+EIWNLVFMQ E+         +    LPK +IDTG+G+
Sbjct: 180 YDRGSEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGTGKGDFKIVGELPKKNIDTGLGI 238

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLI 286
           ER+A +LQ   N Y+ DL + +I  +E++TG  Y       + +  RV+ DH R+   LI
Sbjct: 239 ERVACLLQGVDNVYETDLLRPVIDVAEELTGATYGEKATQQDNIRFRVVADHSRTGMMLI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  A+LLG     M   +  +   M  +YPE+   +  
Sbjct: 299 LDGVTPGNEGRGYILRRLLRRIIRSAKLLGAEGATMERFMNTVMDTMTPSYPEIADNRER 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE------ILNGDVAFKLYDTHGLPLDI 400
           I     +E++ F KTL+ G  L D  +  L          +L+GD AF+L+DT+G P+D+
Sbjct: 359 ILRVAINEEKAFLKTLESGTKLFDEAVDDLRSTHRAKTQKVLSGDKAFELHDTYGFPIDL 418

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D+  FN A+ EQR RA+A +     G T+   +        T F GY
Sbjct: 419 TLEMAQEAGL-DVDMDGFNAAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGY 477

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           + L                          + V  +V+ G+ V E   G +VEV+ D +P 
Sbjct: 478 EELVSG-----------------------ANVIGLVKDGQKVNEVHEGDEVEVILDHSPL 514

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+ D G        L++ DVQK  + ++VH A V  G L   MS+  ++D + R
Sbjct: 515 YAESGGQMADRGRISAGESLLEVNDVQKIGKKLWVHKASVTAGGLDLGMSVEASVDEKWR 574

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              +  HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++  +++ I    N
Sbjct: 575 HGATQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSQEQMEEIALITN 634

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  N+ V T   + E+A A GA AL G  Y ++VRVV +    GG  S  LCGGTHV 
Sbjct: 635 QAIDSNMAVNTIETSLEEAKAMGAMALFGENYGNQVRVVEI----GGPFSIELCGGTHVG 690

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S+ EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV    +  R+
Sbjct: 691 SSAEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGVSRELKVQSEELPERI 750

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMD 814
            ++ E  +  +      +             S  ++  +  ++  +       +L++V  
Sbjct: 751 SQLSERLKAAEKEIEGLRKAQLTARASEIIDSATEVNGIKTITLQLPDGTSGGDLRTVAT 810

Query: 815 ALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            ++ +++    +I+L  + K K   +     + + +   A D+ +   + +  G GGG+P
Sbjct: 811 DIRNRMKDTAAVIVLGAVDKGKFPFIAAATGKAVDEGVKAGDIVKRLGEYVN-GRGGGKP 869

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
            MAQ  G     A +    V   L+
Sbjct: 870 DMAQGSGTAPEGAQRGFEAVKDLLQ 894


>gi|53712054|ref|YP_098046.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|253563907|ref|ZP_04841364.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|265765389|ref|ZP_06093664.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|59798506|sp|Q64YB4|SYA_BACFR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52214919|dbj|BAD47512.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|251947683|gb|EES87965.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|263254773|gb|EEZ26207.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16]
          Length = 872

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/919 (36%), Positives = 483/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M      R +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI+A  Q+ G +Y     N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +++  F+  +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNVEEFDAEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ +E  VN  I
Sbjct: 560 AANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLGVAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  +I  +  +   +  + ++ +K++   L+
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKVIKFCLP-MPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 851 AGGKNPDGLNAAVEKVLEL 869


>gi|256419492|ref|YP_003120145.1| alanyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256034400|gb|ACU57944.1| alanyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 871

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/919 (35%), Positives = 508/919 (55%), Gaps = 72/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF   GH ++PS+ ++  NDPTL+FTN+GM  FK+ F G   P ++ V
Sbjct: 1   MTAPEIRQQFLDFFASKGHHIMPSAPIVVKNDPTLLFTNAGMNQFKDYFLGNRAPAWKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT+ + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIDWSWELLTEVYKLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++         D+EAF+ WKK   +  D+I+     DNFW M +TGPCGPCS
Sbjct: 121 KDRLYVTVFEGDAKENLEKDQEAFEFWKK--HVPEDRILMGNKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D        +  G    + +  + IEIWN VFMQF +   +    LP   +DTGMG
Sbjct: 179 EIHVDCRPDSERALVDGKTLVNADDPQVIEIWNNVFMQFNRLKDRSLESLPAKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLI 286
            ER+  V+Q KT+NYD D+F   I  +E++TG+KY   +    V  RVI DH+R+ SF I
Sbjct: 239 FERLVRVIQGKTSNYDTDVFSGTIGHTEKLTGLKYGCTDSKPDVAFRVIADHIRAISFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L + +PL+  L+P L  +  + +PEL+Q   
Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAVRYYFSFLNWKKPLLQDLVPVLAQQFANVFPELLQQVD 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            +++ +  E+  F +TLD G+  ++  +    +  + +G  AF+LYDT+G P D+   I 
Sbjct: 359 FVQKVVFEEENNFLRTLDSGIRRIEDFMGAAKEKSV-DGKTAFELYDTYGFPYDLTSLIA 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G +  D   F+ A++EQ+ R+RA +        +   +++  +   + F+GY+L   
Sbjct: 418 SENGFSA-DKEGFDAAMKEQKDRSRAATE------LDMGDWTVLNENAESVFVGYELSET 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              + + RK+                            +A   ++ ++V  QTPFYAE+G
Sbjct: 471 ETSVAKYRKI----------------------------KAKGKEQYQLVLSQTPFYAESG 502

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GDTG        +Q+TD +K+   I      V++       +    I+  NR   ++
Sbjct: 503 GQVGDTGILTFGAETIQVTDTKKENNLIVH---FVDKLPANITTTAKAVINKNNRLSTTM 559

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL  +LG+HV+Q GS + P+ LRFD +H   ++  EL  IE+ VN+ I  
Sbjct: 560 NHSATHLLHAALRQVLGTHVAQKGSLVNPEYLRFDFSHFAKVSDEELAQIEEIVNEKIRA 619

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+PVV + + +E+A+  GA AL G KY D VRVV ++      +S  LCGGTHV STGE+
Sbjct: 620 NIPVVIKELPKEEALKLGAMALFGEKYGDVVRVVVMDP----GYSVELCGGTHVGSTGEL 675

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            +    SE ++ AG+RRIEA+TG+ A + +  Q ++LK + + LK +  ++V  V+ +  
Sbjct: 676 GIFKFTSEGAVAAGVRRIEAVTGRNALAFVNAQLQQLKDIKTALK-NPKDIVAVVDNLIN 734

Query: 766 EYRKLQL-----IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +   L+         K +            +  +NF+  I+   +++ LK +   L+ +I
Sbjct: 735 DKAALEKRVEALELEKVRQLSAGLQAEVENVHGINFLGKIVDVNNAEALKQLCFTLKTQI 794

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARL-SAKVLGGGGGGGRPHMAQS 877
            + + +L   +   KA+V ++++++L+      A  + +   A ++ GGG GG+   A +
Sbjct: 795 DNHVFILAA-NIGGKANVALMISDNLVAEKGLEAPKIIKEKIAPIIKGGG-GGQKSFATA 852

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG    + DQ I  V + L
Sbjct: 853 GGQEAGQLDQVITQVKAML 871


>gi|91202499|emb|CAJ72138.1| strongly similar to alanyl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 885

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/918 (37%), Positives = 508/918 (55%), Gaps = 56/918 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  FL FF+K  H + P  SL+P  D TL+FT +GM  FK++F G+ +   +  
Sbjct: 1   MNTGEIRNKFLTFFEKKSHVIWPGDSLVPQGDATLLFTGAGMNQFKDMFLGKGRLNIKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    DL+NVGRT  HHTFFEMLGNFSFG YFK   I  AW+ L +E  L 
Sbjct: 61  TTCQKCLRTG----DLENVGRTASHHTFFEMLGNFSFGDYFKRETIAWAWEFLVQELRLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPCSEIF 176
           + +L+++VY +D E++++W+K   +   KI     NDNFW          GPCGPCSEIF
Sbjct: 117 EEKLFVSVYKDDPESYEIWEKHIRILKSKIYSYGENDNFWPANAPAQGPNGPCGPCSEIF 176

Query: 177 FDQGECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +DQG  +  G      + + +R++EIWNLVF QF+++       LP  ++DTGMGLERMA
Sbjct: 177 YDQGAGVGCGREECEPACDCDRFVEIWNLVFTQFDRKEDGRLEPLPNKNVDTGMGLERMA 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILP 292
            V+Q    N+DID+F  +I++ E +T ++Y          R I DH+++S F IADG+LP
Sbjct: 237 RVMQGVPTNFDIDIFAPVIKSIEDITHLRYHDKKENAVCMRRIADHVKASIFCIADGVLP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYV RR++RRA+     LG  E  +  L+P +   M   YP++ Q +  I   ++
Sbjct: 297 GNEGRGYVERRLLRRAIRDGAQLGLKECFLYKLVPIISDLMQDYYPDIKQRRENIARIIK 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE+E+F +TL+ G V L  ++  + K++I  L G  AFKLYDT+G PLD+ + IL   G 
Sbjct: 357 SEEEKFLETLELGTVRLKELMDTMQKNKIKELPGKEAFKLYDTYGFPLDMTELILKEHGF 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +D       L+ QR +AR+ S   G          +KE    T F+GY+         
Sbjct: 417 S-MDSAGVEVELKRQRMQARSSSSMTGQVFDAGFLGKIKEISKGTTFLGYE--------- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                          +   + + AIVQ   ++E+A +G +V +V DQTPFY E+GGQ+GD
Sbjct: 467 --------------KDSCRARIIAIVQGDYLIEKAEAGSEVSIVLDQTPFYGESGGQIGD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    +G  + ITD +K    I      + +GI+RT   +   ID   R  +  NH+AT
Sbjct: 513 TGILESEGSHICITDTKKNDSFIIH-IGKITKGIVRTGDMIDARIDTHRRGLIKRNHTAT 571

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH  L  ++G H  Q GS ++PD LRFD  H   +T  E+  IED VN+ I +N  V 
Sbjct: 572 HVLHWVLRNVIGRHAEQAGSMVSPDRLRFDFHHFSSLTKEEINRIEDLVNEKIMENALVS 631

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +    ++A  +GA AL G KY +RVR+VS+     G  S  LCGGTH+++TGEI    I
Sbjct: 632 VKEQTLQEARNAGAVALFGEKYEERVRMVSI-----GDFSKELCGGTHINNTGEIGPFRI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V ESS+ AGIRRIEAITG  A +    ++E ++ L   L   + ++  + +E+  E +KL
Sbjct: 687 VGESSVAAGIRRIEAITGISALTRDREKEEIVQELCGILNACEEDLSSKTQELLNEVKKL 746

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                K+K +  +E +        +++ VN ++  I    + +++   D L K  +   +
Sbjct: 747 HKELHKQKQKELLEKIDSLSVTAKEVSGVNIITKRIDNASADDMRRTADMLMKSEKETAV 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            L  +   +   ++ + T       +A  +++  AK++GGGG GGRP MAQ+GG    K 
Sbjct: 807 ALGSVLNGRVIVIISLSTGLASRGLHAGSISKEVAKIVGGGG-GGRPEMAQAGGQVVGKL 865

Query: 886 DQAIAGV-----ASFLKK 898
           D+A+           L+K
Sbjct: 866 DEALDFAEMLFSKEILQK 883


>gi|282896478|ref|ZP_06304498.1| Alanyl-tRNA synthetase, class IIc [Raphidiopsis brookii D9]
 gi|281198584|gb|EFA73465.1| Alanyl-tRNA synthetase, class IIc [Raphidiopsis brookii D9]
          Length = 878

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/905 (36%), Positives = 506/905 (55%), Gaps = 49/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+F+ +  H+ LPS+SL+P  DPT++ T +GM+PFK IF GQ    ++  T
Sbjct: 7   SGNHIRQLFLDFYTQRQHQPLPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRTAEFKRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F L  
Sbjct: 66  TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFGLPP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+++D+EAF +W++  G+   +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 122 ERLVVSVFEDDDEAFNIWQQQIGVPEKRIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPE 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  N
Sbjct: 182 L-GDDHIDLEDDTRFIEFYNLVFMQYNRDISGNLTPLQNKNIDTGMGLERMAQILQKVPN 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++  + Y  ++     + +VI DH+R+   +IAD I  +N GRGY
Sbjct: 241 NYETDLIFPIIETAAKIAKINYHDSDENTKVSLKVIGDHVRAVVHMIADEIRASNVGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G     +  +     +   S YP L Q + +I+  L+ E+  F 
Sbjct: 301 ILRRLIRRVVRHGRLIGIPGEFINQVAETAISLSQSVYPHLRQRETVIKAELQREEGNFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTLDRG  LL  ++  + +    +++G+ AF LYDT+G PL++ Q+I   + L+ +D+  
Sbjct: 361 KTLDRGEKLLGEIIQEVKQQGLTVISGESAFTLYDTYGFPLELTQEIAQEQSLS-VDVEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN  + +Q  RA+A    +   T +     L E   +T+FIGY  L              
Sbjct: 420 FNTEMHKQIERAKAAHETIDL-TVQGSLDKLAEHIHSTEFIGYRQL-------------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ +  ++ +G     A  G  V++V D+TPFYAE+GGQ+GD G   G 
Sbjct: 465 ---------ATTAKIAVLLVEGIAQATATGGTNVQIVLDKTPFYAESGGQIGDQGYISG- 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              L   +  KK    F+H   +ERG ++   S+   +D  NRR+   NH+ATHLL  AL
Sbjct: 515 DGLLIRIEDVKKESDFFIHFGKIERGTVKVGDSVTAQVDTGNRRRAQANHTATHLLQAAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   +SQ GS ++ D LRFD   S+ +T  E++ +ED VN  I+Q  P    I+   
Sbjct: 575 KKIVDEGISQAGSLVSFDRLRFDFNCSRSLTEDEVQQVEDLVNAWISQAHPAQVEILPLP 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY D VRV+          S  LCGGTHV++TGEI +  I+S+  + 
Sbjct: 635 EAKARGAVAMFGEKYGDHVRVIDFPG-----VSMELCGGTHVNNTGEIGVFKIISQVGVS 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA++G     +L  +D+ +K L++  KV    +  R+  +  E R  + +    
Sbjct: 690 AGIRRIEAVSGAAVLDYLNIRDQVVKDLSNRFKVKPEEIPDRITILQTELRHNEKVIQNL 749

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +            + +   +   ++++D + LK   + L +KI +G ++L  I +
Sbjct: 750 KSQLAIVKSDSLLQTAQVVGEHKIIVAQMTDIDPESLKDAAERLLQKIVNGAVVLASIPE 809

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   +  + ++   A       AK+ GGGG GG+P++AQ+GG + +K  QA+  
Sbjct: 810 PGKVSIVAAFSSHVNEKGLQAGKFVGNIAKLCGGGG-GGKPNLAQAGGRDASKLPQALES 868

Query: 892 VASFL 896
               L
Sbjct: 869 AKDNL 873


>gi|298384931|ref|ZP_06994490.1| alanine--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|298262075|gb|EFI04940.1| alanine--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 872

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/919 (35%), Positives = 482/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+       FN  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENGMTVNIEE-FNTEMQQQKQRARNA-----AAIETGDWVTLRE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDCTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDSALREVLGKHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY +RVRV+          S   CGG HV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFGS------SIEFCGGIHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + +  L S    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAP-DLGIAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       K K     E L  +  +I  +  +      + ++ +K++   L+
Sbjct: 733 YIEENAGLKKQVEDYMKEKEASLKERLLKNIQEIHGIKVIKFCAP-LPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + AI  V   
Sbjct: 851 AGGKNTDGLNAAIEKVLEL 869


>gi|124514184|gb|EAY55699.1| Alanyl-tRNA synthetase [Leptospirillum rubarum]
          Length = 891

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/909 (39%), Positives = 511/909 (56%), Gaps = 47/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL +F  +GH+++PS+SLIP  DPTL+FTN+GMVPFK+IF G EK   +  
Sbjct: 1   MDSWELRQKFLLYFNGSGHDVVPSASLIPAGDPTLLFTNAGMVPFKDIFLGAEKTTRKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++QKCVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI  AW  LTKE  +D
Sbjct: 61  VSIQKCVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAISFAWTFLTKELGMD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           +R L++TVY ED+EA +LW++++ +  D+I+R+   DNFW M +TGPCGPCSEI  DQGE
Sbjct: 121 RRLLWVTVYREDDEAERLWREVTDVLPDRIVRLGEKDNFWQMGDTGPCGPCSEILVDQGE 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++EIWNLVFMQ+++  +     LP+ SIDTGMGLER++ V+Q+
Sbjct: 181 RFSCGSPDCKVGCDCDRFLEIWNLVFMQYDRNAEGVLSPLPRPSIDTGMGLERLSAVVQK 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296
           K +NY+ DLF  LI+  E  + + Y          +RVI DHLRSS FL+ +GI P+NEG
Sbjct: 241 KDSNYETDLFMPLIRTIETYSRVHYGAGEGSLDHAYRVIADHLRSSVFLLHEGIAPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RG+VLRRI+RRA+ + R LG   P++  L  ++   M   YPEL  +   I++ LR E+ 
Sbjct: 301 RGHVLRRIIRRALLFGRELGLPHPILPSLAESVAEMMAKPYPELRTSLSRIQDVLRLEEG 360

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL+ GL L+  +L  L   ++++  G++ F L+DTHG PLDI++D    +G   +D
Sbjct: 361 RFHQTLESGLPLVQEMLRTLEKKQEKVFPGEMLFLLHDTHGFPLDIVEDAAKMQG-ILLD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + +EEQR R R+      +G  E       +   + +F GY+             
Sbjct: 420 YKGFEEKMEEQRERGRSSW----TGKKEDFPLPSDKLKKSVEFQGYEKT----------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        +   V  ++   E V+E  +G+ V VV D+T FY E GGQ+GD G  
Sbjct: 465 ------------SMQGTVLFLLNGKEEVKEVHAGESVLVVLDKTVFYPEGGGQVGDVGDL 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           IG    +++   +K   G  V    V  G +    ++   +D + R+    +H+ATHLLH
Sbjct: 513 IGPFGYIRVRGAKKPYPGWIVLSGEVVSGKVSVGETIDQHVDEEARQGSERHHTATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL T+LG  V Q GS + P+ LRFD T  +P++   L ++E  VN  I +N PV    M
Sbjct: 573 AALRTVLGEQVRQAGSLVAPERLRFDFTCPQPVSPENLLAVEALVNGWIFRNSPVDASEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +  A+  GA A    KY DRVRVV V        S  LCGGTHV STG+I  L I+ E+
Sbjct: 633 EKSKALDMGALAFFDEKYGDRVRVVQVPG-----TSVELCGGTHVRSTGQIGSLLILQET 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AGIRRIEA+ G  A    +   ++LK L   L+    ++  +   I  E    Q   
Sbjct: 688 GVAAGIRRIEAVAGPLAYQKAVTWRQELKDLRELLEAGTSSLEEKTRTILRENAACQKEI 747

Query: 775 AKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K     L+         ++         +S  D +EL+  MDA++ KI SG I+L+G
Sbjct: 748 QSLKSRLFSLEEKHSRKETLEVEGHQLAVLHVSLDDPRELRVRMDAIKSKIPSGAILLIG 807

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + + K + L   + DL + F      +  A  + GG GGG+P  A+ GGP  +     +
Sbjct: 808 ETTD-KLAFLGWTSSDLGEAFPISQWVKTLAAEV-GGKGGGKPSWAEGGGPKPDDVGGFL 865

Query: 890 AGVASFLKK 898
               S +++
Sbjct: 866 QSAKSRMEE 874


>gi|268680286|ref|YP_003304717.1| alanyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618317|gb|ACZ12682.1| alanyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 846

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/895 (38%), Positives = 497/895 (55%), Gaps = 56/895 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            +R  FL+FF++ GH+++ SS L+P +D TL+FTN+GMVPFK++FTG+         TT 
Sbjct: 2   DVRAEFLKFFEQKGHKVIESSPLVP-DDATLLFTNAGMVPFKSVFTGEVPRPNPPRATTC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L + +
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISHAWEFVTEVLKLPKEK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++TV++ D+EA ++W K   + A +I+R    DNFW M +TGPCGPCSEIF DQG E  
Sbjct: 121 LWVTVHESDDEAEEIWIK--HIDASRIMRFGDKDNFWQMGDTGPCGPCSEIFIDQGAENF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+  +     LPK SIDTGMGLER+  V +   +N
Sbjct: 179 NTPEDYMGGDGDRFLEIWNLVFMQYERDKEGNLHPLPKPSIDTGMGLERVTAVQEGVFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  LF  L     ++ G  Y      ++RVI DH+RS +FL+A G+     GRGYVLRR
Sbjct: 239 YDSSLFIPLTSKVAELCGKAYAYKTGASYRVIADHIRSVAFLVAQGVSFGRVGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  LL  LC  MG  YP L+  K  + E +++E+E F  T+ 
Sbjct: 299 ILRRAVRHGYLLGLREPFMYKLLDTLCDLMGKQYPYLVAKKEGVAEQIKNEEESFFTTIA 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            GL L +  L +     + +G+VAFKLYDT+G PLD+  D+L  +GL+ ++   F   + 
Sbjct: 359 SGLELFEKELPNT--KAMFSGEVAFKLYDTYGFPLDLTADMLREKGLS-VNEAEFEALMA 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++R++A   G G   T   +  L EK+G   F+GY                       
Sbjct: 416 EQKARSKASWKGSGDKATHGEFKPLLEKFGLNTFVGYTQKE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
               V + V A++ +  + VE     +   V+F++TPFYA +GGQ GD G   G G  L 
Sbjct: 457 ----VKTKVLALLDENFKEVESL--DENGWVMFEKTPFYAMSGGQCGDEGSIEGYGKVLD 510

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                     +           L     + L +D     ++  +HSATHLLH AL TILG
Sbjct: 511 TKKFFDLNLSLV-----ELEKPLHVNDEVALVVDLSR-LEIEKHHSATHLLHSALRTILG 564

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV+Q GS +  + LRFD +H K ++  EL +IE  VN IIA  +   T++MN E+A  S
Sbjct: 565 DHVAQAGSLVEKERLRFDFSHPKALSHEELSNIEAFVNRIIASGVAGETKLMNIEEAKKS 624

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY   VRVVS      G  S  LCGGTHV +   I   +I+ ES + AG+RR
Sbjct: 625 GAMALFGEKYGSEVRVVSF-----GDASIELCGGTHVENVANIGSFFILKESGVSAGVRR 679

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEAI G  A ++      +++++     V     +  +  + EE + L+        Q  
Sbjct: 680 IEAICGGAALAYAQALRTEMEAIKE--SVKHKEPLIGINRLKEEIKSLKTEVESLNAQAG 737

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
               S H    VN +  I+  + + ++K+ +D L+ + +S  ++L+ + KE K  +   V
Sbjct: 738 KAVESLH----VNGVELIVDVLGAGDIKARIDDLKNEKESVAVLLLQV-KEDKVLIAAGV 792

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                    A    +  A ++GGGG GGR   AQ+GG + ++ ++A     ++ K
Sbjct: 793 KNAP---IKAGAWIKEIAPIVGGGG-GGRDDFAQAGGKDASRVEEAKNAALAYAK 843


>gi|260171843|ref|ZP_05758255.1| alanyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315920155|ref|ZP_07916395.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694030|gb|EFS30865.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 872

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/919 (35%), Positives = 484/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEYLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKASGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL    +  ++I  FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENEMT-VNIDEFNEEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  +
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARV 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D+VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDKVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIMSESSVAAGVRRIEAYTGARVEELLDTVQDTLSDLKALFNNAP-DLGIAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  +I  +  +      + ++ +K++   L+
Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVVKFCAP-LPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGSIDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 851 AGGKNTDGLPAAVEKVLEL 869


>gi|86134548|ref|ZP_01053130.1| Alanyl-tRNA synthetase [Polaribacter sp. MED152]
 gi|85821411|gb|EAQ42558.1| Alanyl-tRNA synthetase [Polaribacter sp. MED152]
          Length = 873

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/919 (36%), Positives = 487/919 (52%), Gaps = 72/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR TFL+FFQK  H ++PS+ ++  +DPTLMF NSGM PFK  F G   P    +
Sbjct: 1   MKSQDIRATFLDFFQKKSHLVVPSAPMVTKDDPTLMFVNSGMAPFKEYFLGNATPKKNRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKID 120

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  LY+TV++          D EA+ +WK+   ++ D+I++    DNFW M E GPCGPC
Sbjct: 121 KDILYVTVFEGSEDADQLNMDTEAYDIWKEY--IAEDRILKGNKKDNFWEMGEQGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +E+  + +EIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHVDIRSAEEKAKLDGRTLINEDHPQVVEIWNLVFMQYNRKANGTLEELPNKHIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLI 286
           G ER+  VLQ   +NYD D+F  +I+    +T   Y  N   +   RVI DH+R+ +F I
Sbjct: 239 GFERLCMVLQNVQSNYDTDVFTPIIREIGTITNTSYGKNEKQDIATRVISDHVRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K 
Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAVRYGFTFLNKKEPFIYRLVSILSDKMGKAFPELKSQKQ 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LIE  ++ E+  F +TLD+GLVLLDG++ +    EI +GD  F+LYDT G P+D+   IL
Sbjct: 359 LIENVIKEEETSFLRTLDQGLVLLDGIIENSKSKEI-SGDKVFELYDTFGFPIDLTALIL 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G   +D   F + L++Q++R+RA      S  +   W  L +     +FIGYD L  
Sbjct: 418 SEKGYT-LDEKGFEEELQKQKNRSRAA-----SEMSTDDWTILIDDAVE-EFIGYDFLEA 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  +   RK                           V     G+  ++VF+ TPFY E G
Sbjct: 471 NVKLTRYRK---------------------------VTSKKDGEMYQLVFNLTPFYPEGG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G        +      KK   + +H A  +      + +    +D + R +   
Sbjct: 504 GQVGDKGYLEDTHGDVVYILDTKKENNVIIHFA--KNLPQNLDANFKAVVDEKQRYRTEC 561

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+HV Q GS +    LRFD +H   +T+ EL+ +E+ VN  I+ 
Sbjct: 562 NHTATHLLHQALREVLGTHVEQKGSAVHSKYLRFDFSHFSKLTTEELQDVENFVNARISG 621

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            LP+   R +  E AIA GA AL G KY D VR +          S  LCGGTHV +TG+
Sbjct: 622 KLPLEESRNITMEKAIADGAMALFGEKYGDTVRAIKFG------KSIELCGGTHVKNTGD 675

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SE ++ AGIRRIEAIT    +      +  L  +   L  +  N V  V+++ 
Sbjct: 676 IWHFKIKSEGAVAAGIRRIEAITNDAVKDFYFDNNRTLFEIKDLLN-NTKNPVKAVQKLQ 734

Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E  +LQ    +   +              +I  V F++  + ++D+  +K++  +L K+
Sbjct: 735 DENTELQKQVEQLLKEKAQNLSGEIKNQLQEINGVQFLATKV-DLDANGIKNLAFSLGKE 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            Q+  ++       +KA +   ++++L +   +NA  + R   K++ GGG GG+P  A +
Sbjct: 794 HQNLFLLFASAPSNEKALLTCYISKELANERGYNAGTVVRELGKLIHGGG-GGQPFFATA 852

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N     +A+     +L
Sbjct: 853 GGRNPGGIPKALEKAKDYL 871


>gi|301161775|emb|CBW21315.1| putative alanyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 872

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/919 (36%), Positives = 483/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M      R +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI+A  Q+ G +Y     N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +++  F+  +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNVEEFDVEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ +E  VN  I
Sbjct: 560 AANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLGVAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K     E L  +  +I  +  +   +  + ++ +K++   L+
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKVIKFCLP-MPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 851 AGGKNPDGLNAAVEKVLEL 869


>gi|254882808|ref|ZP_05255518.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|254835601|gb|EET15910.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
          Length = 872

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 489/919 (53%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +     + ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++   FN  +++Q+ RAR       +      W ++KE  G T F+GYD  
Sbjct: 419 ILRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V   TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   ++I D +K+           ++     ++ ++  +D + R   
Sbjct: 503 SGGQVGDTGVIVSEFETIEIIDTKKENNLPIHI---TKKLPEHLDVPMMACVDTEKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDKQLREVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHV +T
Sbjct: 620 RENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +    +  ++   + +
Sbjct: 674 GKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K       L  +  +I  V  +  II  + +  +K +   L+
Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I + + +++G     K  + ++++EDL+    NA  L R +AK++ GG GGG+PH A 
Sbjct: 792 GEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 851 AGGKNPDGLNAAVDKVIEL 869


>gi|294778219|ref|ZP_06743645.1| alanine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|294447847|gb|EFG16421.1| alanine--tRNA ligase [Bacteroides vulgatus PC510]
          Length = 872

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 489/919 (53%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +     + ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++   FN  +++Q+ RAR       +      W ++KE  G T F+GYD  
Sbjct: 419 ILRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V   TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   ++I D +K+           ++     ++ ++  +D + R   
Sbjct: 503 SGGQVGDTGVIVSEFETIEIIDTKKENNLPIHI---TKKLPEHLDVPMMACVDTEKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHV +T
Sbjct: 620 RENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +    +  ++   + +
Sbjct: 674 GKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K       L  +  +I  V  +  II  + +  +K +   L+
Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I + + +++G     K  + ++++EDL+    NA  L R +AK++ GG GGG+PH A 
Sbjct: 792 GEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 851 AGGKNPDGLNAAVDKVIEL 869


>gi|320120352|gb|EFE28354.2| alanine--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 881

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/908 (36%), Positives = 519/908 (57%), Gaps = 50/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +V+ IR ++L+FF    H + PS  L+P ND +L+  N+GM P KN F G EKP    +
Sbjct: 6   KSVNEIRKSYLDFFASKDHYVSPSFPLVPINDNSLLLINAGMAPLKNYFMGIEKPPKNRM 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           +T QKC+R G    D++NVG T RH TFFEMLGNFSFG YFK  AI  AW+ +T   ++ 
Sbjct: 66  STCQKCIRTG----DIENVGITARHATFFEMLGNFSFGNYFKNEAIAWAWEFVTTVLEIS 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG 180
              L++TVY+ED+EA+ +W+   G+S D+I+R+   DNFW +   TGPCGPCSEI+ D+G
Sbjct: 122 PELLWVTVYEEDDEAYNIWRDKIGVSEDRIVRLGKEDNFWEIGTGTGPCGPCSEIYIDRG 181

Query: 181 ECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                         + +R++E WNLVF QF ++  +    LP  +IDTGMGLER+A +LQ
Sbjct: 182 AEFGCDDEHCKPGCDCDRFLEFWNLVFTQFNKEEDKTLTPLPHPNIDTGMGLERVACMLQ 241

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
              + +DID  + +I+  E++  +KY  +    ++ R+I DH+R+ +FLI DG++P+NEG
Sbjct: 242 GVDSIFDIDTMQDIIRKIEELLHVKYREDSKKDISIRIITDHIRAVTFLIGDGVIPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + +LLG   P +  L+  +      AYPEL + +  I + ++ E++
Sbjct: 302 RGYVLRRLLRRAARHGKLLGMDRPFLHELMSKVIEINADAYPELKEKQEYIYKVIKVEED 361

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F +T+ +GL +L   ++ +    + +++ + AF+LYDT G P D+ ++IL   G +  +
Sbjct: 362 KFEETIYQGLEILREEMNRMKDTNETMMSPEKAFRLYDTFGFPFDLTKEILTEEGFSVEE 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
                + +E+QR+RAR+      +   +K   SL      T F GY              
Sbjct: 422 EGF-YEEMEKQRNRARSARKDSDNEGWKKENISL--DLEPTVFEGYTSF----------- 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + + +IVQ+  +++ A  G K   + ++TPFYAE+GGQ+GD G  
Sbjct: 468 ------------TEEASIISIVQEDALIQTAKKGDKAIFILNRTPFYAESGGQVGDIGIL 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                ++ +   +K    + +H   V  G +    S++  I+   R +   NHSATHLLH
Sbjct: 516 ESQRGKVSVIQTKKGNNDVIMHIGEVIEGEISVGDSMIAEINESRRNETMRNHSATHLLH 575

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL T+LG+HV+Q GS +TP+ +RFD TH + +T  EL+ +E  VN  I   L V  + M
Sbjct: 576 KALRTVLGNHVTQAGSFVTPERVRFDFTHFEAMTKEELQKVELAVNGAIYSYLEVTCQEM 635

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E A   GA AL G KY   VRVVS+     G +S  LCGGTHVS+T EI +  IVSES
Sbjct: 636 AIEKAKEKGAMALFGEKYGQTVRVVSM-----GDYSVELCGGTHVSNTSEIGMFKIVSES 690

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TG +    L  Q+  L+ L+  +K  Q  +  RVE    E ++ +   
Sbjct: 691 GVASGVRRIEAVTGMKVYEVLKKQEGLLEDLSEKMKTKQDQLSERVEHQIVELKEAKKEI 750

Query: 775 AKRK---LQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K   LQ N++++  H   ++D+  +++    VDS +L+++  +L  K  + +++L  
Sbjct: 751 AQLKNTILQENMDNIMSHCIDVSDLKLLTNEFENVDSDDLRNIAQSLVDKDDTLVVVLAS 810

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             K++K + + +  ++ +++  +  +L R  AK+  GGG GG+ +MAQ+GG + +K   A
Sbjct: 811 -KKDEKINFIAMAGKNAVEKGAHCGNLLREVAKIAKGGG-GGKANMAQAGGKDVSKIKDA 868

Query: 889 IAGVASFL 896
           +      L
Sbjct: 869 LNVAKDVL 876


>gi|205830242|sp|Q30PA9|SYA_SULDN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 849

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/896 (37%), Positives = 485/896 (54%), Gaps = 54/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL FF+   H+ + S+ L+P +D TL+F N+GMVPFK+IFTG+   P      + 
Sbjct: 2   DIREEFLRFFESKNHDRVESAPLVP-DDATLLFNNAGMVPFKSIFTGEVPSPANPRAVSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T      + +
Sbjct: 61  QTCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITGVLKFPKEK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++TV++ D+EA  LW +   +  D+I+R+   DNFW M +TGPCGPCSEIFFDQG E  
Sbjct: 121 LWVTVHESDDEAEALWLRHVSI--DRIMRLGDKDNFWQMGDTGPCGPCSEIFFDQGAEKF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  + +  ++N
Sbjct: 179 SGPEDYMGGDGDRFLEIWNLVFMQYERSSDGTLTSLPKPSIDTGMGLERVVAISEGVSSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y   LF  +I+  E +   +Y      ++RVI DH+R+S FL+A G+  +NEGRGYVLRR
Sbjct: 239 YSSSLFMPIIKKVETLIEKEYVYATGASYRVIADHIRTSLFLLAQGVNFSNEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG++EP M  L+  +   MG  Y  L Q    ++E +  E+ RF KT+ 
Sbjct: 299 ILRRAVRHGYLLGFSEPFMFKLVDTVVEIMGGEYDYLAQKSHSVKEQIELEEARFFKTIA 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L +    +I +G VAFKLYDT G PLD+ +D+L  + L  +D   F + ++
Sbjct: 359 SGIELFNAELHNT--KDIFSGSVAFKLYDTFGFPLDLTEDMLREKNLK-LDSAKFEELMQ 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQRSRA+A   G G       +  L EK+    F+GY+  +                   
Sbjct: 416 EQRSRAKAAWKGSGDEAVHGDFKELLEKFSENSFVGYESTKQ------------------ 457

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S V A++ +     ++  +G    V  D TPFYA++GGQ GD G   G    L 
Sbjct: 458 -----KSRVLALLDESYHHADKLSAGVNGWVFLDTTPFYAQSGGQCGDIGELNGFAKVLD 512

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                                 L+    +   +D      ++ +HSATHLLH  L  +LG
Sbjct: 513 TKKFFGLNLSQI-----STEKELKVGDEVEAVVDISRGE-ITKHHSATHLLHAVLFDVLG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            H+SQ GS +    LRFD +H K I++ EL  IE  VN  I + +   T +M+ ++A  S
Sbjct: 567 DHISQAGSLVEASRLRFDFSHPKAISNEELAEIERRVNYEIMRGIRANTEVMSIDEAKKS 626

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A  G KY D VRVVS      G  S   CGG HV ++  I    I  ES + AG+RR
Sbjct: 627 GAKAQFGEKYGDEVRVVSF-----GDASIEFCGGVHVENSANIGSFIITKESGVSAGVRR 681

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G  A ++   Q E L+ +   +K    +++  V  +     +L+      +  + 
Sbjct: 682 IEAVCGNAAFNYFSEQRELLREVEHEVK--NLDILAGVARLKSNIVELKKELHDAESCIK 739

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            +     KI  +N +S ++ E+ S ++K  +D L+ + +S   +L  + K+ K  +   V
Sbjct: 740 TD----IKIQSINGISVVVDELTSGDIKEKIDELKNQHESLCAILFQV-KDDKVMMAAGV 794

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                    A D  +  A +LGGGG GGR   AQ+GG + +K  +A      ++ +
Sbjct: 795 KG---SDAKAGDWIKHIAPLLGGGG-GGRADFAQAGGKDISKLSEAKIEALRYITE 846


>gi|282856374|ref|ZP_06265653.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282585745|gb|EFB91034.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 882

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/898 (36%), Positives = 496/898 (55%), Gaps = 48/898 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  F+ F++  G     S SL+P +DP+L+FT +GMVPFK  + G E+P Y    
Sbjct: 5   SGKEIRQLFVSFWESKGCHHYKSFSLVP-DDPSLLFTIAGMVPFKKYYLGLEEPEYARAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVGRT RHHTFFEMLGNFS+GGYFK  ++   W+ LT+   LD 
Sbjct: 64  TSQKCVRT----NDIENVGRTARHHTFFEMLGNFSWGGYFKRESLTWGWEFLTQVLGLDG 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+Y T+Y +D EAF +W K  G+    ++    ++NFW M   GPCGP SEI +DQG+ 
Sbjct: 120 SRMYATIYKDDREAFDIWTKEIGMPESHLVLNGEDENFWFMGPQGPCGPDSEILYDQGKE 179

Query: 183 IPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G       + +R++EIWN VF Q+++Q       LP+ +IDTGMGLER+A+++Q   
Sbjct: 180 FSCGPDCHPGCDCDRFLEIWNHVFTQYDRQADGSFKPLPRKNIDTGMGLERLASLIQGVR 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N+++ DLF  L++ +  + G++Y  N+   +  +VI DH+R+  F+IADGILPAN+G+GY
Sbjct: 240 NDFETDLFAPLMKKAGDIAGVRYGENDQSDLALKVISDHVRAVCFMIADGILPANDGQGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  Y RL+G   P +  ++PA+   MG  Y EL + +L IE+ +  E+  FG
Sbjct: 300 VLRRLIRRAARYGRLIGIDRPFINDVIPAVIELMGDPYAELGENRLTIEKIVEIEENGFG 359

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+ +G  LLD  +        + L G VAF+LYDT G PL++ ++I    G   +D   
Sbjct: 360 KTIRQGSELLDAEVKAALESAGKTLGGAVAFQLYDTFGFPLELTREICAEHG-VSVDEEG 418

Query: 418 FNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   +  QR RAR+ S  + +   +  ++ +L  ++GAT F+GY+               
Sbjct: 419 FKTEMARQRKRARSSSKQIANNVIKGNVFNALANEFGATDFVGYEKSE------------ 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       ++ ++A+V+ G  V+    G++  V+ + +PFYAE GGQ+GDTG    
Sbjct: 467 -----------CNTKIRALVRDGRKVDALDEGEEGMVLLESSPFYAERGGQIGDTGLIKA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG+   + D       + +    V +G LR    ++  ID      ++ NH+ATH+LH  
Sbjct: 516 DGVLAVVKDSTHPFGELNMQTVTVTKGALRVGQGVLAQIDMDRHLAIARNHTATHILHAV 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV QNGS ++   LRFD TH +     +L+ IE   N  I  + PV T + + 
Sbjct: 576 LGKVLGGHVRQNGSLVSDRFLRFDYTHYEAPRREQLEEIETLTNAAILTDRPVTTVVTDL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E A ASGA AL   KY   VRVVSV     G  SS LCGGTHV S+G I  L IV E SI
Sbjct: 636 EAAKASGAKALFEEKYGQTVRVVSV-----GDFSSELCGGTHVPSSGTIGSLKIVGEESI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---I 773
            +GIRRI A+TG      L         L++ L V +  ++ +V+ + EE + L+     
Sbjct: 691 GSGIRRITAVTGMTTVRLLQELSRTADELSTRLAVKRPLLIEKVKGMEEEIKALKRQIDE 750

Query: 774 HAKRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            ++ +L  +++ L   K      VN     +   D   L+   D  +      + ++   
Sbjct: 751 MSRAELAGSIDGLIAKKTLAGGAVNLYIGRVDGQDMDLLRESGDKFKDGDPKAVFVIFSK 810

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + E K  +L ++ E+    + +A  + +  A ++ GG GGGRP+MAQ+GG    K D+
Sbjct: 811 AAEDKVQILCMLGEEAQKKKLHAGRIVKELAALV-GGSGGGRPNMAQAGGREPGKIDE 867


>gi|284929441|ref|YP_003421963.1| alanyl-tRNA synthetase [cyanobacterium UCYN-A]
 gi|284809885|gb|ADB95582.1| alanyl-tRNA synthetase [cyanobacterium UCYN-A]
          Length = 880

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/905 (35%), Positives = 504/905 (55%), Gaps = 49/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL F++   H++ PS+SLIP  DPT++ T +GM+PFK IF GQEK  +  +T
Sbjct: 9   TGNEIRDKFLHFYKGKKHQIFPSASLIPR-DPTVLLTIAGMLPFKPIFLGQEKSSFSRIT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND+DNVG T RHHTFFEMLGNFSFG YFKE++I+ AW+L T+ F L  
Sbjct: 68  TSQKCIRT----NDIDNVGYTARHHTFFEMLGNFSFGDYFKEQSIRWAWELSTQIFLLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V++ D+EAF +W+ I G+   +IIR+   DNFW   +TGPCGPCSE+++D    
Sbjct: 124 ESIVVSVFESDDEAFNIWENIIGIPQTRIIRMGEKDNFWKAGKTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G    + E+  R+IE +NLVFM++ +      F L K +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GEQNLNLEDDSRFIEFYNLVFMEYSRDENGNLFPLGKKNIDTGMGLERMAQILQKVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I++   +  ++Y         + ++I DH+R+   +IADGI  +N  RGY
Sbjct: 243 NYETDLIFPIIESILNIIAIEYRHAEENTKKSLKIIGDHIRAVIHMIADGITASNTDRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RR + + RL+G     +  +          +YPE+ + ++ I + L  E++ F 
Sbjct: 303 VLRRIIRRIIRHGRLIGIEGKFINKIAQTAIQISEKSYPEVREKEIFISKELSKEEDIFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RG  LL  ++ +  K   ++G  AF LYDT+G PL++ Q+I     L  ++I  F 
Sbjct: 363 KTLERGEKLLCEIIDNTIKPNQISGLDAFILYDTYGFPLELTQEIAEESQLK-VNIDEFY 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + ++ Q+ R++A    +      +I   L     AT+F GY  L  S             
Sbjct: 422 EQMKLQQCRSKAAHENINLSLGYEI-NKLISDVDATKFTGYSDLNSSV------------ 468

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +VK I+   ++V++A  G  V+++ D TPFYAE+GGQ+ D G  +G   
Sbjct: 469 -----------VVKKILVNQKVVQQAEKGNNVQIILDSTPFYAESGGQVSDHGYLVGHKS 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I D+ +K   +F+H+  +E G L T  +L   +D   R+ + +NH++THLL  AL  
Sbjct: 518 FIRINDI-QKESEVFIHYGKIEEGYLLTNETLDAVVDNNYRQCIKLNHTSTHLLQAALRK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            L S ++Q GS +T D LRFD  +   IT  +++ IE+ VN  I++   V    M+ + A
Sbjct: 577 NLDSSITQAGSLVTFDRLRFDFQYPHQITIEQIEQIENTVNFWISEKHDVSIENMSLKVA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY++ VRV+ +        S  LCGGTHV++  EI L  I+S++ I +G
Sbjct: 637 KEKGAIAMFGEKYSEEVRVIDIPE-----ISMELCGGTHVNNIAEIGLFKIISQTGISSG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEAITG     +L  +D  +K+L    KV    +  R+  +  + +  Q      + 
Sbjct: 692 VRRIEAITGSAILEYLKVKDSIVKNLCEHFKVKPEEIQKRIISLQTDLKDTQKQLEIVQQ 751

Query: 780 QLN------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           +L       + D++     D+  +   +  VD K L+   + LQ K+  G ++L      
Sbjct: 752 ELAMVKSDKLLDIAESLDNDLKIIVSNVGNVDKKALQHSAERLQNKLGEGAVVLGATLPG 811

Query: 834 KKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            K S++   ++ +      +A       A++  GG GGGRP++AQ+GG + +K ++A+  
Sbjct: 812 NKVSLVASFSKKIYKDKNLSAGKFIGEIAQICEGG-GGGRPNLAQAGGKDASKLEEALLT 870

Query: 892 VASFL 896
             + L
Sbjct: 871 AKNKL 875


>gi|225021330|ref|ZP_03710522.1| hypothetical protein CORMATOL_01349 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945712|gb|EEG26921.1| hypothetical protein CORMATOL_01349 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 905

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/919 (34%), Positives = 483/919 (52%), Gaps = 61/919 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61
              IR  F   F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     
Sbjct: 19  THEIRERFTHHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFPNGTA 77

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 78  TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTSPIDEG 133

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  ++++TVY +D+EA  +W+ + G+  ++I R+   DNFWSM   GPCGP SEI+
Sbjct: 134 GYGFDPEKIWVTVYLDDDEAANIWENVVGIPTERIQRLGMADNFWSMGIPGPCGPSSEIY 193

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G + +  RY+EIWNLVFM+ E+       N +    LPK +IDTGMG+
Sbjct: 194 YDRGPEY-GNEGGPAADDSRYLEIWNLVFMEKERGAGTGKDNFEILGPLPKKNIDTGMGV 252

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  ++++TG  Y     + +  RVI DH R++  +I D
Sbjct: 253 ERIACLLQGVDNVYETDLLRPVIDEAQRLTGATYGANHEDDIRFRVIADHSRTAMMIILD 312

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+   +  I+
Sbjct: 313 GVTPGNEGRGYILRRLLRRIIRSARLLGATGKTMESFMNTIMDTMTPSYPEIADNRERIQ 372

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL+ G  L +   + + ++    + G  AF L+DT+G P+D+  ++  
Sbjct: 373 RVAITEETAFLKTLESGTELFETTAAKIKQEGKTTVAGADAFALHDTYGFPIDLTLEMAA 432

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F++ + EQR+RA+A S     G T+   +        T+FIGYD L   
Sbjct: 433 EAGL-QVDTEGFDKLMAEQRARAKADSQAKKHGHTDLSIYRDWVDNHPTEFIGYDEL--- 488

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  ++  G+ V E  +G  VEV+ D + FYAEAGG
Sbjct: 489 --------------------TAQSHVIGLLSDGKKVSEVSAGHDVEVILDASTFYAEAGG 528

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G        L++ DVQK  + ++VH A VE G      ++   +D   R      
Sbjct: 529 QIGDRGTMTLGDSLLRVNDVQKIGKKLWVHRATVETGGFALGDTVTAAVDPAWRHAARQA 588

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG    Q GS   P  LRFD  +++ +T  +L+ IE   N  +  +
Sbjct: 589 HSATHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPEQLEHIELITNQAVDAD 648

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T     ++A A GA AL G  Y + VRVV +    GG  S  LCGGTHV+ + +I 
Sbjct: 649 WQVNTIETTLDEAKAMGAMALFGENYGNIVRVVEI----GGPFSMELCGGTHVAHSSQIG 704

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + I+ ESSI +G RRIEA +G  +  +L  +   +  LAS LK     V  R+ ++  +
Sbjct: 705 PVSILGESSIGSGARRIEAYSGLDSFKYLSKERTLVAGLASALKAPSAEVPDRIAQLTTK 764

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            ++ +      +    +          H    +   S ++     + +L+++   ++  +
Sbjct: 765 LKEAEKTIENLRKAELLAQGNRLVARAHLPNGIIVASAVLPDGTTAGDLRTLAADVKNHL 824

Query: 821 --QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             ++G+++L   + + K   ++  T++ + R  NA  + +     +  G GGG+P MAQ 
Sbjct: 825 AGEAGVVLLASSTSDGKVPFVVAATKEAIARGANAGTIVKTLNPYI-DGRGGGKPDMAQG 883

Query: 878 GGPNGNKADQAIAGVASFL 896
            G N +     +   +  +
Sbjct: 884 SGSNPDGLPAGLKAASDHI 902


>gi|78778092|ref|YP_394407.1| alanyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|78498632|gb|ABB45172.1| alanyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
          Length = 851

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/896 (37%), Positives = 485/896 (54%), Gaps = 54/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL FF+   H+ + S+ L+P +D TL+F N+GMVPFK+IFTG+   P      + 
Sbjct: 4   DIREEFLRFFESKNHDRVESAPLVP-DDATLLFNNAGMVPFKSIFTGEVPSPANPRAVSC 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T      + +
Sbjct: 63  QTCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITGVLKFPKEK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++TV++ D+EA  LW +   +  D+I+R+   DNFW M +TGPCGPCSEIFFDQG E  
Sbjct: 123 LWVTVHESDDEAEALWLRHVSI--DRIMRLGDKDNFWQMGDTGPCGPCSEIFFDQGAEKF 180

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  + +  ++N
Sbjct: 181 SGPEDYMGGDGDRFLEIWNLVFMQYERSSDGTLTSLPKPSIDTGMGLERVVAISEGVSSN 240

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y   LF  +I+  E +   +Y      ++RVI DH+R+S FL+A G+  +NEGRGYVLRR
Sbjct: 241 YSSSLFMPIIKKVETLIEKEYVYATGASYRVIADHIRTSLFLLAQGVNFSNEGRGYVLRR 300

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG++EP M  L+  +   MG  Y  L Q    ++E +  E+ RF KT+ 
Sbjct: 301 ILRRAVRHGYLLGFSEPFMFKLVDTVVEIMGGEYDYLAQKSHSVKEQIELEEARFFKTIA 360

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L +    +I +G VAFKLYDT G PLD+ +D+L  + L  +D   F + ++
Sbjct: 361 SGIELFNAELHNT--KDIFSGSVAFKLYDTFGFPLDLTEDMLREKNLK-LDSAKFEELMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQRSRA+A   G G       +  L EK+    F+GY+  +                   
Sbjct: 418 EQRSRAKAAWKGSGDEAVHGDFKELLEKFSENSFVGYESTKQ------------------ 459

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S V A++ +     ++  +G    V  D TPFYA++GGQ GD G   G    L 
Sbjct: 460 -----KSRVLALLDESYHHADKLSAGVNGWVFLDTTPFYAQSGGQCGDIGELNGFAKVLD 514

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                                 L+    +   +D      ++ +HSATHLLH  L  +LG
Sbjct: 515 TKKFFGLNLSQI-----STEKELKVGDEVEAVVDISRGE-ITKHHSATHLLHAVLFDVLG 568

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            H+SQ GS +    LRFD +H K I++ EL  IE  VN  I + +   T +M+ ++A  S
Sbjct: 569 DHISQAGSLVEASRLRFDFSHPKAISNEELAEIERRVNYEIMRGIRANTEVMSIDEAKKS 628

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A  G KY D VRVVS      G  S   CGG HV ++  I    I  ES + AG+RR
Sbjct: 629 GAKAQFGEKYGDEVRVVSF-----GDASIEFCGGVHVENSANIGSFIITKESGVSAGVRR 683

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G  A ++   Q E L+ +   +K    +++  V  +     +L+      +  + 
Sbjct: 684 IEAVCGNAAFNYFSEQRELLREVEHEVK--NLDILAGVARLKSNIVELKKELHDAESCIK 741

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            +     KI  +N +S ++ E+ S ++K  +D L+ + +S   +L  + K+ K  +   V
Sbjct: 742 TD----IKIQSINGISVVVDELTSGDIKEKIDELKNQHESLCAILFQV-KDDKVMMAAGV 796

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                    A D  +  A +LGGGG GGR   AQ+GG + +K  +A      ++ +
Sbjct: 797 KG---SDAKAGDWIKHIAPLLGGGG-GGRADFAQAGGKDISKLSEAKIEALRYITE 848


>gi|257869401|ref|ZP_05649054.1| alanyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803565|gb|EEV32387.1| alanyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 880

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/918 (36%), Positives = 507/918 (55%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKHLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGTVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W++  GL+ + I+ I   DNFW +   GPCGP SEIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWREEIGLTPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G                 E ERY+EIWNLVF +F  Q       LP  +IDTGMGLE
Sbjct: 174 YDRGPEFNDVAEDDPENYPGGENERYLEIWNLVFSEFNHQADGTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV---TGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q    N++ DLF  +I+A +++             ++ +VI DH+R+ SF I D
Sbjct: 234 RMVSIIQNAPTNFETDLFMPIIEAVQELSGNFAYGESKATDISFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIDSAFLYKLVPIVGKIMESYYPEVLAQQAFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V++       E L G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRNEEERFHETINEGLEILNQVIAKVKADGQETLAGADIFKLYDTYGFPVELTEEVAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + ++ QR+RAR+      S   +     L +    ++F+GY+ L   
Sbjct: 414 DEGLK-VDHAGFEKEMDAQRARARSARSTELSMGVQSAL--LTDIKVESRFVGYESLE-- 468

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 +S +  I+Q+ ++++   +G+  +++F +TPFYAE GG
Sbjct: 469 ---------------------ANSELLVIIQEEQLLDTVTTGE-AKLIFKETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ DTG  +     +       KKA      H     G L    S  L +D   R ++  
Sbjct: 507 QVADTGTVVDQSGVIVAEITDVKKAPNGQFLHTAKVTGNLTEGASYFLQVDQHRRNKIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LGSH +Q GS + P  LRFD +H   +T+ EL  +E  VN  I +
Sbjct: 567 NHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTADELSQMEQIVNQKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LPVVT   + + A   GA AL G KY   VRVV+V        S  LCGGTHV++T +I
Sbjct: 627 ALPVVTIETDIDTAKGMGAMALFGEKYGQDVRVVNVA-----DWSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T Q A + L   + +LK++A  +K     +VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSQEAYALLHEGEAQLKAIAGIVKSAQIKDVVSKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R LQ  +     +L  +          ++  + F++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLRDLQKENQALASKLANQQAGDVFKDVKEVNGIRFIAAKVTVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   + + K ++L  +T    ++   A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 ELSDVLVLA-TANDGKVNLLAAMTPQANEKGLKAGDLIKHIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G      D A+  VA++L
Sbjct: 860 GKQPEGIDAALTEVANWL 877


>gi|331697330|ref|YP_004333569.1| alanyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326952019|gb|AEA25716.1| alanyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 887

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/921 (35%), Positives = 489/921 (53%), Gaps = 63/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   F + F   GH  + S+SLI  +DPTL+F N+GMV FK  F G     Y   
Sbjct: 1   MQTHEIARRFTDHFTGTGHTRVASASLI-LDDPTLLFVNAGMVQFKPYFLGDAPAPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR G    D+D VGRT RH+TFF+M GNFSFG YFKE AI+ AW L+T      
Sbjct: 60  TSIQKCVRTG----DIDEVGRTTRHNTFFQMAGNFSFGDYFKEGAIEHAWRLITSSTSDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R+++TV+ +D+EA  LW++I+G+ A++I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGLDPDRIWVTVFHDDDEAAGLWQRIAGIPAERIQRRGMADNYWSMGVAGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFM+ E+     +   P        +IDTG+G+
Sbjct: 176 YDRGPQY-GREGGPVVDEDRYLEIWNLVFMEKERAAGGTKDDFPIIGELPAKNIDTGLGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G +Y     + V  RVI DH RS   +I D
Sbjct: 235 ERVAYLLQGVDNVYETDLVRPVITRAEELSGRRYGASHEDDVRFRVIADHARSGVMIIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N+GRGYVLRR++RR +  +RLLG  EP++      +  EM  +YPEL+     I 
Sbjct: 295 GVTPSNDGRGYVLRRLLRRIVRSSRLLGVQEPVLGAFAEVVRDEMAPSYPELVTDFERIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
             +R+E+E F +TL  G  + D  ++   +     L GD AF+L+DT+G P+D+  ++  
Sbjct: 355 AVVRAEEEAFLQTLTAGSRIFDVAVADTRRAGGTTLAGDQAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
             GL  +D   F   + EQR+RA+A +    +G  +  ++  L + +G T F+GY  L  
Sbjct: 415 EAGLT-VDQDRFAALMTEQRTRAKADAAARKTGHHDGSVYRPLLDAHGTTTFLGYTEL-- 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                     V  +V  G  V  A  GQ+VEVV D+TPFYAEAG
Sbjct: 472 ---------------------AAEGTVVGLVVDGAAVPAASEGQQVEVVLDRTPFYAEAG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G        ++I DVQ    G+ VH   VE G +  + ++V  +D   R  +S 
Sbjct: 511 GQQADHGVLRTGSAIVRIDDVQSPVAGLRVHRGTVEAGTVAVDDAVVAEVDVARRASISR 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIA 644
            H+ATHL+H  +   LG+  +Q GS   P  LRFD T     + +A L  IE+ VN  + 
Sbjct: 571 AHTATHLVHAGVRGALGTAAAQAGSLNAPGRLRFDFTSPSGAVPAAALAEIEEEVNTKLQ 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N  V T   + ++A   GA  L G KY DRVRVV +     G +S  LCGGTHV+ TGE
Sbjct: 631 ENREVETYETSMDEARRLGAMMLFGEKYGDRVRVVDM-----GDYSRELCGGTHVARTGE 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + ++ ++SE+SI +G+RR+EA+ G  A   +  +   L  ++  LK     +  R+  + 
Sbjct: 686 LGIVKVLSEASIGSGVRRVEALVGNDALRQVSTEHLLLSQISDQLKARPDELPDRIAALV 745

Query: 765 EEYRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQK 818
           E  R  +    K +                 +A +  ++      V   +L+++   ++ 
Sbjct: 746 ERLRTAERDLEKHRADAALGAAGALADGAEDVAGIALVAVAAPAGVSGNDLRALAADVRG 805

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++    G++ L G   + K S ++  T    DR   A  L    A  + GG GGG+P +A
Sbjct: 806 RLGDRPGVVALFGTDGD-KVSFVVATTAAARDRGLAAGKLIPAFAPAV-GGRGGGKPDLA 863

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG N      AIA + S L
Sbjct: 864 QGGGQNPAGVPDAIAALRSAL 884


>gi|212693638|ref|ZP_03301766.1| hypothetical protein BACDOR_03157 [Bacteroides dorei DSM 17855]
 gi|237724236|ref|ZP_04554717.1| alanyl-tRNA synthetase [Bacteroides sp. D4]
 gi|265755936|ref|ZP_06090403.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|212663891|gb|EEB24465.1| hypothetical protein BACDOR_03157 [Bacteroides dorei DSM 17855]
 gi|229437424|gb|EEO47501.1| alanyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|263234014|gb|EEZ19615.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 872

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/919 (35%), Positives = 491/919 (53%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K+
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKI 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +     + ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++   FN  +++Q+ RAR       +      W ++KE  G T F+GYD  
Sbjct: 419 ILRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V   TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   ++I D +K+           ++     ++ ++  +D + R   
Sbjct: 503 SGGQVGDTGVIVSEFETIEIIDTKKENNLPIHI---TKKLPEHLDVPMMACVDTEKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHVS+T
Sbjct: 620 RENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVSAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +    +  ++   + +
Sbjct: 674 GKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K       L  +  +I  V  +  II  + +  +K +   L+
Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I + + +++G     K  + ++++EDL+    NA  L R +AK++ GG GGG+PH A 
Sbjct: 792 GEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 851 AGGKNPDGLNAAVDKVIEL 869


>gi|222151505|ref|YP_002560661.1| alanyl-tRNA synthetase homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120630|dbj|BAH17965.1| alanyl-tRNA synthetase homolog [Macrococcus caseolyticus JCSC5402]
          Length = 874

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/915 (37%), Positives = 511/915 (55%), Gaps = 59/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+  P  
Sbjct: 1   MKRLTAAEIRQMYLDFFVEKGHMIEPSAPLVPIDDDTLLWINSGVATLKKYFDGRVIPSN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSER 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ LW    GL+ D+I RI    NFW + E GP GP +EIF
Sbjct: 117 WMAIEPEKLYVTIHPEDTEAYDLWVNEIGLTDDRITRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNPDHTYSPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q+   NYD DLF  +I+A+EQ++G KY  N  + V  +VI DH+R+ SF I DG 
Sbjct: 234 MASISQDVPTNYDTDLFMPIIKATEQISGRKYRDNKEDDVAFKVIADHIRTVSFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ +A+ +   +P M  L+  +   M   YP++ + K  I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRFAQKIDINKPFMYDLVDIVAAIMKPYYPDVDKNKDFIKKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE++RF +TL+ GLV  + +       D +L G+  FKLYDT G P+++ +++    G
Sbjct: 354 VKSEEDRFHETLEEGLVQFNALKDSAKASDNVLKGEDVFKLYDTFGFPVELTEELAEEAG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              +D   F  A+E QR+RAR       S   +     L     ++ F+GYD L      
Sbjct: 414 -VEVDHEGFEVAMEAQRTRAREARQKTQSMQVQNEV--LSNIRVSSTFVGYDTL------ 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                             V + + A++Q G  VEEA     V+ +  +TPFYA +GGQ+ 
Sbjct: 465 -----------------TVDTNIIALLQDGVEVEEADDRSDVQFIMAETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG   G+G  +++T+V K   G  +H   V  G +     +   ++ + R  +  NHSA
Sbjct: 508 DTGTVTGEGFEIEVTEVTKAPNGQNLHTGTVRFGKVTKSA-VNAAVNAEFRTFVIKNHSA 566

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL  +LG+HV+Q GS +TP+ LRFD +H  P+T  E+  +E  VN+ I QN+ V
Sbjct: 567 THLMHQALKDVLGTHVNQAGSLVTPERLRFDFSHFGPVTKEEIAKVEQIVNEKIWQNIHV 626

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
               M   +A A GA AL G KY D VRVV +       +S  LCGG HV +TGEI L  
Sbjct: 627 EINEMPISEAKAKGAMALFGEKYGDIVRVVEM-----SDYSIELCGGVHVRNTGEIGLFK 681

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+T + A S+L    + + +L   +KV  +  +  +V EI    +
Sbjct: 682 IVSESGTGAGVRRIEAVTSKAAFSYLSEYVDTVDTLLPVVKVKAKEQLTEKVNEITSMVK 741

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           + +    +   +++   +     +  +I  +  +S  +   D+K L+ +MD  + K+Q  
Sbjct: 742 EQEKQIVQLNKEISALKMGDISNNIQEINGIKVLSTEVEVQDAKMLRELMDDYKSKVQDA 801

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I LV  +   K + +  V + L D+  A DL +  A+   GG GGGRP  AQ G PN  
Sbjct: 802 VIFLVAAT--DKLNYMASVPKALTDKVKAGDLIKAVAQE-TGGKGGGRPDSAQGGAPNPK 858

Query: 884 KADQAIAGVASFLKK 898
              +A+  V S++ +
Sbjct: 859 DVTKALQFVNSYINQ 873


>gi|78188347|ref|YP_378685.1| alanyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|123580381|sp|Q3ATN3|SYA_CHLCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78170546|gb|ABB27642.1| alanyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
          Length = 886

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/923 (35%), Positives = 499/923 (54%), Gaps = 68/923 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y   
Sbjct: 1   MKSHEIRQSFLDFFAQKGHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLDKGSRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K  AI  AW+L T  + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKLEAITWAWELFTVVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +D+E+F++WK+ + ++ D I+R    DNFW M ETGPCGPCSEI  D   
Sbjct: 121 KERLYATVYQDDDESFQIWKEQTDINPDHILRFGDKDNFWEMGETGPCGPCSEIHIDLTP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G    +    R IE+WNLVF+Q+ +Q+      LPK  +DTGMG ER+  V+Q K 
Sbjct: 181 D-GSGKELVNVGDYRVIELWNLVFIQYNRQSDGHLEPLPKKHVDTGMGFERIVAVMQGKG 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F+ L     ++TG++Y    +  N +  RVI DH R+ +F ++DG +P+NEGR
Sbjct: 240 SNYDSDVFQPLFDKITEITGVRYGASLDAPNDIAMRVIADHARTLTFALSDGAMPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y+R LGY +P++  L+  L   MG  +PEL+Q +  +   +++E+E 
Sbjct: 300 GYVLRRILRRALRYSRNLGYHQPILHQLVGTLALAMGEVFPELVQRQEAVSAIIKAEEES 359

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ L   ++  L     +++ G  AF+LYDT+G P D+ + +    G   +D 
Sbjct: 360 FIVTLDRGIDLFSELVEKLRASNGKVIAGSDAFRLYDTYGFPFDLTRLMAADEGFE-VDG 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++EQ++RAR+          +   +       A+QF+GYD L            
Sbjct: 419 EGFEHCMQEQKNRARSDRREKQRVDDDGAKWQWFSDVRASQFVGYDHLVH---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        S+ +  I Q            K+ +V D TPFYAE+GGQ GD G   
Sbjct: 469 -------------SATITGIRQGN---------GKLLLVLDATPFYAESGGQTGDNGWLE 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRT------------EMSLVLTIDYQNRRQL 583
               RL + D  K  + I    +     +  +            E+++  ++    R+  
Sbjct: 507 NSRYRLHVADTVKDGDAIVHVVSDAFDKVQDSAVQPEDVEIVEQELAVAASVHRTARQDA 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHL+H AL  ILG HV Q GS ++P+ LRFD +H   +T  E++++E  VN  I
Sbjct: 567 ERNHTATHLMHAALRRILGEHVQQKGSFVSPERLRFDFSHFSKLTDEEIEAVEIAVNTQI 626

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +  PVV    +  +DA+A GA A  G KY DRVRVV +        S  LCGGTHV + 
Sbjct: 627 REAEPVVKHADVLFDDAVAKGALAFFGDKYADRVRVVEIPG-----MSVELCGGTHVDNI 681

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVE 761
           G I L  I+SE+S+ +G+RRIEA+TG+ A   L  +  +L+ +   LK      VV +V 
Sbjct: 682 GRIGLFKIISEASVASGVRRIEAVTGKAAEKLLWQEYRELQQIRQLLKAKGDEAVVEKVA 741

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDAL 816
            + +  ++L+   A+ +    VE L+       +++    ++  +   D + ++    AL
Sbjct: 742 GLMDSKKELEKELAESRAAALVEQLTAALQAAPEVSGCRVLAIEVKNNDGETMRQATMAL 801

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874
           + K    + +L  +    K  ++   T++ +     +A  L R +AK + GGG GG+   
Sbjct: 802 RDKAPCAVGLLATVEA-GKVVLVSFATDEAVRTCSLDAGALIREAAKQVQGGG-GGKAEF 859

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           A +GG       +A+    + ++
Sbjct: 860 ATAGGKQPENLSKALDAFTAAVR 882


>gi|260891458|ref|ZP_05902721.1| alanine--tRNA ligase [Leptotrichia hofstadii F0254]
 gi|260858841|gb|EEX73341.1| alanine--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 871

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/912 (35%), Positives = 509/912 (55%), Gaps = 58/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F++FF+   H+   S+SLIP +D +L+ T +GMVPFK  F G+++  ++ +
Sbjct: 1   MTGNEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK   L+
Sbjct: 60  TTYQKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLE 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178
           + RL+++VY  D+EA+++W K  G+ A++I+R+   DN+W+    G CGPCSEI++D   
Sbjct: 116 EDRLWVSVYKTDDEAYEIWNKEIGVPAERIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQN 175

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G+          ++G+R++EIWNLVF ++ +        LP+ +IDTG GLER+ +V+Q
Sbjct: 176 MGKNNEEAYRKPGDDGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERITSVVQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K NN+D DLF ++I+  + V  ++    N    ++I DH+R+S FLI DG+LP+NEGRG
Sbjct: 236 NKDNNFDTDLFTNIIKGIKSVLEIQ-GNENEEAIKIIADHVRASVFLIGDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           Y+LR+I+RRA         ++    +  +  L+P +   M  AYPEL + +  IE+ +R 
Sbjct: 295 YILRKIIRRAFGAGSSAKQKVFEKEDIFLYKLVPYVLETMNEAYPELAEKQEYIEKVIRL 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF  TL  G  +L+  +  L     + L  ++ FKLYDT G P ++ + IL  +G  
Sbjct: 355 EEERFATTLKNGTEMLEEEIQKLKAENQKELPAELTFKLYDTFGFPFELTKLILENQGFE 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             +   F + L EQ  R++     +     ++      EK+G T+F GY           
Sbjct: 415 ASEEE-FEKKLAEQVQRSKDSRTTISDMIKDEFIDEFFEKHGKTEFTGYSQ--------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S +  I +   I          E++FD+TPFYAE+GGQ+ DT
Sbjct: 465 -------------NFEEKSTLLHIAKSEGI-------SGYEMIFDKTPFYAESGGQVADT 504

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++ +V KK +       I         + + + ID   R+ +  NH+ATH
Sbjct: 505 GIITSGEFEGRVVNVVKKHDVFIHQVEITRGIAPAVGVEVKMQIDVNRRKDIQRNHTATH 564

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH  L   LG+HV Q+GS +  + LRFD +H + ++   ++ IE  VNDII  NL V  
Sbjct: 565 ILHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAVSPEMIEKIEKGVNDIILSNLQVKI 624

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              N EDA A GA AL   KY D VRVV ++      +S  LCGGTHV STGEI L  I 
Sbjct: 625 NYENIEDAKARGAMALFSDKYGDVVRVVEIDG-----YSIELCGGTHVKSTGEIGLFNIE 679

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G RRI A TG ++ +++   +EK+K ++   +  + NVV  +E+   + R   
Sbjct: 680 SESGIASGTRRITATTGHKSLNYVNRLEEKIKEISDIFRTDEKNVVDIIEKYIGDMRAAV 739

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +H + + +L   ++     +   + DV  +       +  ELK ++D  ++K+QSGII+
Sbjct: 740 KVHEEMQTKLVKYEINEMLENLETVNDVKVLKSSFENKNVDELKEIVDRGKEKMQSGIII 799

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G +   KA  ++ VT+DL+ +  A ++ +  A  + GG GGGRP  AQ+GG +G+   
Sbjct: 800 L-GTNNNGKAIFVVGVTKDLISKVKAGEIVK-VAAQVAGGNGGGRPDFAQAGGKDGSAVK 857

Query: 887 QAIAGVASFLKK 898
           +A+     F+ +
Sbjct: 858 EAVEKAFEFITE 869


>gi|312195530|ref|YP_004015591.1| alanyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311226866|gb|ADP79721.1| alanyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 883

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 492/915 (53%), Gaps = 58/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL  F++ GH ++PS+SLI   DPTL+  N+GMVPFK  F G   P     
Sbjct: 1   METAEIRRRFLNHFEQRGHLVVPSASLIAE-DPTLLLVNAGMVPFKPYFLGDLTPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQKCVR      D+DNVG+T RH +FF+M GNFSFG YFK   I  A++LLT+ +   
Sbjct: 60  TSVQKCVRTV----DIDNVGQTARHASFFQMCGNFSFGDYFKAEVIPWAFELLTEGYGFK 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA ++WK +  L A++I R    DN+WSM   GPCGPCSEI+FD+G 
Sbjct: 116 PDDLWATVYLDDDEAEEIWKGL--LPAERIQRRGKEDNYWSMGVPGPCGPCSEIYFDRGP 173

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLERMATV 236
              G   G   +  RY+E+WNLVFMQFE+             LP  SIDTGMGLERMAT+
Sbjct: 174 AY-GRDGGPEADENRYLEVWNLVFMQFERGEGAGYEFPILGDLPAKSIDTGMGLERMATL 232

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++  + ++TG  Y  +  + V  RVI DH R+++ LIADG++P+N
Sbjct: 233 LQGVENLYEIDISRPVLDRAGELTGKTYGAQHGDDVRLRVIADHTRTAAMLIADGVVPSN 292

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+   RLLG  EP+M +L   + + MG  YPEL+     I      E
Sbjct: 293 EGRGYVLRRMLRRAVRNVRLLGGREPVMENLFGVVQSAMGPIYPELVDRAAAITAVAVGE 352

Query: 355 DERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  + D  +  +       L G+ AF+L+DT+G P+D+  ++   +GL  
Sbjct: 353 ELAFLETLRTGTTIFDVAVGKAKSTGAAQLAGEEAFQLHDTYGFPIDLTLEMAAEQGLT- 411

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + ++ QR  A+A       G  +  ++  +  + G T F GY  L        
Sbjct: 412 VDEPGFRRLMDRQRELAKADRASRRIGNVDLSVFRPILARSGPTSFTGYTEL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQ--GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                            ++ V  +V    G  V  A  G+ V VV D TPFYAE+GGQ  
Sbjct: 464 ---------------TRTATVVGLVSAATGLGVPAAGEGEDVGVVIDSTPFYAESGGQEA 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  + DG  ++I DVQK    + +H   V RG +R    + +T+D   RR +S +H+A
Sbjct: 509 DLGRFVFDGGEVEIIDVQKPIPDLVLHRGKVVRGEIRLGAEVEVTVDADRRRAVSRSHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H A    LG   +Q GS  +P  LRFD      I +A L  +ED VN++  ++L V
Sbjct: 569 THLVHTAFRRALGESATQAGSLNSPGRLRFDFHALGSIPAAVLADVEDEVNEVALRDLDV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              + ++++A   GA AL G KY +RVRVV     D G +S  LCGGTHV+ + ++  + 
Sbjct: 629 TAFVTSQDEARRIGAMALFGEKYGERVRVV-----DVGDYSRELCGGTHVARSAQLGAVK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++SESSI AG RR+E + G  A  +L  +   +  L+  LKV    +  RV +I    R 
Sbjct: 684 LLSESSISAGTRRVEGLVGLDAFRYLAREHLLVSQLSGLLKVRADELPDRVSDIVTRLRD 743

Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKI-QS 822
            +    + + +  +        S   +  V  ++          +L+ ++  ++ ++   
Sbjct: 744 AERELERVRGEAVLAGAAGLANSAVDVGGVALVAAEAPNGTSPDDLRKLVLDVRGRLIDR 803

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             I+    +  ++A +++  TE    R   A DL + ++  L GG GGG+P +AQ GG +
Sbjct: 804 PAIVAAASAGGERAFLVVATTEGSRGRGLKAGDLVKAASAEL-GGSGGGKPDVAQGGGSD 862

Query: 882 GNKADQAIAGVASFL 896
                +A+A V   +
Sbjct: 863 ITGVGRALAKVRDLV 877


>gi|282901157|ref|ZP_06309088.1| Alanyl-tRNA synthetase, class IIc [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193989|gb|EFA68955.1| Alanyl-tRNA synthetase, class IIc [Cylindrospermopsis raciborskii
           CS-505]
          Length = 878

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/905 (36%), Positives = 504/905 (55%), Gaps = 49/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+F+ +  H+ LPS+SL+P  DPT++ T +GM+PFK IF GQ    ++  T
Sbjct: 7   SGNHIRQLFLDFYTQRQHQPLPSASLVPE-DPTVLLTIAGMLPFKPIFLGQRAAEFKRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F+L  
Sbjct: 66  TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFELPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +WK+  G+   +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 122 ERLVVSVFEEDDEAFNIWKQQVGVPEKRIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPE 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  N
Sbjct: 182 L-GDDHIDLEDDSRFIEFYNLVFMQYNRDVSGNLTPLQNKNIDTGMGLERMAQILQKVPN 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++  + Y  ++     + +VI DH+R+   +IAD I  +N GRGY
Sbjct: 241 NYETDLIFPIIETAAKIAKINYHDSDENTKVSLKVIGDHVRAVVHMIADDIRASNVGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G     +  +     +   S YP L Q + +I+  L  E+  F 
Sbjct: 301 ILRRLIRRVVRHGRLIGIPGEFINQVAETAISLSQSVYPHLRQREAVIKAELEREESNFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTLDRG  LL  ++  +      I++GD AF LYDT+G PL++ Q+I   + L+ +D+  
Sbjct: 361 KTLDRGEKLLGEIIQEVKHQGLTIISGDSAFTLYDTYGFPLELTQEIAQEQNLS-VDVEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN  + +Q  RA+A    +   T +     L E   +T+FIGY  L              
Sbjct: 420 FNTEMHKQVERAKAAHETIDL-TVQGSLDKLAEHIHSTEFIGYRQL-------------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ +  ++ +G     A  G  V++V D+TPFYAE+GGQ+GD G   G 
Sbjct: 465 ---------STTAKIAVLLVEGIAQSTAPVGTNVQIVLDKTPFYAESGGQIGDQGYIFG- 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              L   +  KK    F+H   +ERG ++   S+   +D  NRR+   NH+ATHLL  AL
Sbjct: 515 DGLLIKIEDVKKESDFFIHFGKIERGTVKVGDSVTAQVDTGNRRRAQANHTATHLLQAAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   +SQ GS ++ D LRFD    K +T  E++ +ED VN  I+Q  P    I+   
Sbjct: 575 KKIVDEGISQAGSLVSFDRLRFDFNCPKSLTEDEVQQVEDLVNAWISQAHPAQVEILPLP 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY D+VRV+          S  LCGGTHV++TGEI +  I+S+  + 
Sbjct: 635 EAKARGAVAMFGEKYGDQVRVIDFPG-----VSMELCGGTHVNNTGEIGVFKIISQVGVS 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  + +    
Sbjct: 690 AGIRRIEAVSGAAVLDYLNVRDKVVKDLSDRFKVKPEEIPDRITILQTELRHNEKVIQNL 749

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +            + +   +   ++++D + LK   + L +KI +G ++L  I +
Sbjct: 750 KSQLAIVKSDTLLQTAQVVGEHKIIVAQMTDIDPESLKDAAERLLQKIINGAVVLASIPE 809

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   +  + ++   A       AK+ GGGG GG+P++AQ+GG + +K  QA+  
Sbjct: 810 PGKVSIVAAFSSHVNEKGLQAGKFVGNIAKLCGGGG-GGKPNLAQAGGRDASKLPQALES 868

Query: 892 VASFL 896
               L
Sbjct: 869 AKDNL 873


>gi|238926823|ref|ZP_04658583.1| alanine--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885355|gb|EEQ48993.1| alanine--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 890

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/912 (36%), Positives = 512/912 (56%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
                +R  +L FF +K GH  LPS SL+P NDPTL+   +GM P K  FTG+ KP    
Sbjct: 19  MTGKELREAYLNFFAEKKGHLRLPSYSLVPENDPTLLLIGAGMAPLKPFFTGKVKPPRHR 78

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + T Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L
Sbjct: 79  IVTCQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIEL 134

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++T+Y  D+EA ++W +  GLS D I+ +   DNFW +   GPCGP SEI+ D G
Sbjct: 135 PKEKLWVTIYPNDDEARQIWLEQPGLSLDHIVPL--EDNFWEIGP-GPCGPDSEIYIDLG 191

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                G P      + +R++EIWNLVF Q+++    E  +L   +IDTG GLER+A+V+Q
Sbjct: 192 AERGCGSPTCSVGCDCDRFLEIWNLVFTQYDRTEDGEYNLLAHKNIDTGCGLERLASVVQ 251

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I+ +  V+  +Y  +    ++ +VI DH RS   +I DGILP+NEG
Sbjct: 252 NKKTNFETDLLYPVIEYAVNVSQTEYGADPQKDISLKVIADHARSVVIMIMDGILPSNEG 311

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS--AYPELIQAKLLIEETLRSE 354
           RGYVLRR +RRA+ + R+LG T+P +   + A+    G    + EL+  +  I+  +R E
Sbjct: 312 RGYVLRRTIRRAIRHGRMLGITKPFLDGAVDAVIEIFGDVKDFSELVSKEEYIKRVIRIE 371

Query: 355 DERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF  TL +G+ LL+  +        +IL G+V FKLYDT+G P ++ ++IL   GL  
Sbjct: 372 EERFAATLVQGIDLLNEEIDSLKANAQQILPGEVGFKLYDTYGFPRELTEEILHENGLK- 430

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F Q +E+QR+RAR+                                        D
Sbjct: 431 LDDAGFAQEMEKQRNRARSARA-----------------------------ENQAVAVPD 461

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              L      +      + V AI + G +V+    G+   ++   TPF+AE GGQ+GD G
Sbjct: 462 LSGLDTSALTENAEARKAEVVAIWRDGALVDMLHDGESAGIILSTTPFHAEGGGQVGDAG 521

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + D  R+ I + ++  +G   H A VE G ++   ++ + +D  ++   + NH+ATHL
Sbjct: 522 LLLSDVGRIVIRNTKRLPDGTVYHLAYVEEGQIQRGETVQIQLDEVHKLSSARNHTATHL 581

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  I+G HV Q GS +TP+ LRFD T+ +P+T  +++ IED VN+ +  ++ +   
Sbjct: 582 LQAALQRIVGDHVHQAGSLVTPERLRFDFTNFEPLTQQQVQDIEDLVNEEVLSSIDLDIS 641

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M    A   GA AL G KY D VRVV V        S  LCGG+HVS+TG+I L  I+ 
Sbjct: 642 TMPIAVAKERGAMALFGEKYGDIVRVVEVPN-----FSIELCGGSHVSNTGQIGLFKIIG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEAITG+ A  ++   D  +++L+  LKV  G+++ +V+++ +E + +Q 
Sbjct: 697 ESGVAAGVRRIEAITGRAAYQYVSETDALIRTLSQRLKVKAGDLLTQVDKLIDEKKNMQE 756

Query: 773 IH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                A  + Q + + L     +I   + +   ++    +EL+++ D   +K+ +GI++L
Sbjct: 757 QLRVFADSRDQADAQKLLSDVQEIGKFHVIVGKVNVDSMEELRNIADLTCEKLSAGIVVL 816

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G++   K ++++   +D +    +A ++ + +AK +GGGG GGRP MAQ+GG       
Sbjct: 817 -GMAANDKVNLVVKADQDAVAYGAHAGNIIKAAAKAVGGGG-GGRPDMAQAGGKMPQNLP 874

Query: 887 QAIAGVASFLKK 898
           QA       +++
Sbjct: 875 QAFDDAVLVIRQ 886


>gi|312132175|ref|YP_003999515.1| alanyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
 gi|311908721|gb|ADQ19162.1| alanyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
          Length = 887

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/928 (34%), Positives = 498/928 (53%), Gaps = 77/928 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+K GH ++PS+ L+  NDPTLMF NSGM  FK+ F G   P  + +
Sbjct: 1   MTSHEIRKAFLDFFEKRGHLIVPSAPLVAKNDPTLMFNNSGMAQFKDFFLGNGNPPSKRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ A+  +W+LLT+ + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGFDTYHHTMFEMLGNWSFGDYFKKEALAWSWELLTEVYKLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + R+Y++V++         D+EAF +WK I G   ++II     DNFW M + GPCGPCS
Sbjct: 121 KDRIYVSVFEGNPSEGVPFDQEAFDIWKSIIG-DENRIILGNKKDNFWEMGDIGPCGPCS 179

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D  +        G    +++  + +EIWN VFMQ+E++       LP+  +DTGMG
Sbjct: 180 EIHIDLRDQEEVDQISGKELVNKDHPQVVEIWNNVFMQYERKADGTLIPLPEKHVDTGMG 239

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNIVNHRVIVDHLRS 281
            ER+   +Q K +NYD DLF++ IQ  EQ++G KY        +    V  RVI DHLR+
Sbjct: 240 FERLCMAIQGKKSNYDTDLFQNTIQVIEQLSGFKYGVNGTLSSDNYVDVAMRVIADHLRA 299

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF I+DG LP+N   GYV+RRI+RRA+ Y    L + EP M  L+P L  +    +PEL
Sbjct: 300 VSFAISDGQLPSNAKAGYVIRRILRRALRYGYSYLNFREPFMCKLVPVLAKQFADVFPEL 359

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
                 + + +  E++ F +TL++GL  LD +      +++L+G+  F+L DT G P+D+
Sbjct: 360 QAQVDFVSKVVEEEEKTFLRTLEQGLKRLDVLFKEDKGEKLLSGETVFELSDTFGFPVDL 419

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
              I   +G  GID   + +ALEEQ++R+R  +    +      W  L +   A +F+GY
Sbjct: 420 TALIAREKGF-GIDEEGYKKALEEQKARSRKDAQKEAA-----DWVELGD-TDAVEFLGY 472

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D L  +  + + R                            + +   GQ++ VV DQTPF
Sbjct: 473 DQLSSTALLTKYR----------------------------ISKTKQGQEIHVVLDQTPF 504

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM----SLVLTID 576
           YAE GGQ+GDTG        L ++D +K+ +             + +       +   ++
Sbjct: 505 YAEMGGQVGDTGTITIGDQTLHVSDTRKENDLFIHVVKDKNAAEILSGYEEPVEVFAQVN 564

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R+ +  NH+ATHL+  AL  +LGSH+ Q GS    +  RFD +H   +T  ELK +E
Sbjct: 565 AERRKNIEKNHTATHLMLAALKEVLGSHIVQRGSYQNDELTRFDFSHFAKVTDEELKKVE 624

Query: 637 DNVNDIIAQNL-PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           D VN+ I  N+     R +  ++A+  GA A  G KY D VRV++ +      +S  LCG
Sbjct: 625 DIVNEKIRANILKGEKRNVPFQEAVDMGATATFGEKYGDFVRVITFDPN----YSIELCG 680

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV+STGEI L   +SE S+ AG+RR+EA+TG +A   +  Q + ++ L   LK +  +
Sbjct: 681 GTHVNSTGEIGLFRFISEGSVSAGVRRVEAVTGVKALELMREQAQLIQELKDLLKAT--D 738

Query: 756 VVGRVEEIWEEYRKLQL-----IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           ++  VE +  E  + Q       +A  +            +  +N ++  ++   +  LK
Sbjct: 739 LLKAVETLKAENAQFQKRIEMFENASIQAAKVALLSKVENVNGMNVVAARVNVPHADGLK 798

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGG 868
           ++   L++ I   +++L  +  + K S+ I++ E+++     NA  + R  AK++ GG G
Sbjct: 799 TLAFGLKQGIGKPVVILGAVIND-KPSLAILIDENVVKEKNLNAGTIIREVAKLMKGG-G 856

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG+PH A +GG +    D AI    + +
Sbjct: 857 GGQPHFATAGGSDVKGLDDAIEAAKASI 884


>gi|300088455|ref|YP_003758977.1| alanyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528188|gb|ADJ26656.1| alanyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 856

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/907 (36%), Positives = 495/907 (54%), Gaps = 64/907 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +RT FL++F + GH+++PS+SLIP  DPTL+ T +GMV FK  F G+EKP    +
Sbjct: 3   MTGDQLRTLFLDYFAEKGHKVMPSASLIPHGDPTLLLTTAGMVQFKPYFLGREKPPATRL 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKC R      D+D VG    H TFFEMLGNFS G YFK+ AI LAW+ +T+   L 
Sbjct: 63  TSTQKCFRT----TDIDAVG-DASHLTFFEMLGNFSVGDYFKKEAIDLAWEFVTERLGLP 117

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
             RL++TV+ +D+EA + W+   GL A++I+R+   DNFW    ++GPCGPCSEI +D G
Sbjct: 118 MERLWVTVFLDDDEAIRFWRDK-GLPAERIVRLGEKDNFWGPAGDSGPCGPCSEIHYDFG 176

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P    +    R+ EIWNLVFMQF Q     R  LP+ +IDTGMGLER++ ++Q
Sbjct: 177 EAAGCGKPDCGPACSCGRFCEIWNLVFMQFNQDTAGTRTPLPRPNIDTGMGLERLSAIMQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              + Y  D F +L+    +V+G +Y  +       R++ +H R  +FLIADG++P+NE 
Sbjct: 237 GVPSVYQTDRFDYLLDRVAEVSGREYGRDAETDRAMRIVAEHSRGITFLIADGVIPSNES 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RR   + R+LG  +P M+ L+ A+   M  AYPEL   +  I E +  E+ 
Sbjct: 297 RGYVLRRLLRRTALFGRMLGLDQPFMVPLVEAVIERMSPAYPELTGRREFIIELVAREES 356

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +TL  G+ LL+ +++  G+  ++ G+ AF+LYDT+G PLD+  +I   +G  G+D  
Sbjct: 357 RFAETLLTGMQLLEDMMAGAGEGRMITGEQAFRLYDTYGFPLDLTMEIASGKGF-GVDEA 415

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ +  QR +ARA +              L   +  T F GYD L             
Sbjct: 416 GFDREMGRQREKARAGARFGTDKAV-----PLDHTFQHTCFTGYDTLSQY---------- 460

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          +  I++     +    G+   +V D+T FYAE GGQ GD G    
Sbjct: 461 -------------GTIDGIIRNNAQTDVISEGEHGGLVLDKTAFYAEMGGQAGDIGRITA 507

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                ++T     + G+ +H   V RG  R     +  +D   R   + NH+ATHLL  A
Sbjct: 508 GDSVFEVTGTVLLSPGVTIHQGYVARGAFRIGDEALTAVDPTTRYDTARNHTATHLLQAA 567

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG H+ Q GS + PD LRFD +H K +T  EL  +E  VN+ I +N PV       
Sbjct: 568 LIEVLGEHIQQRGSVVAPDRLRFDFSHLKAVTPEELIRVEAIVNERIRENHPVTAAETGY 627

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            DA+ SG  AL G KY + VRV+S+        S+ LCGGTH+ +TGEI    I+SESS+
Sbjct: 628 RDALKSGVTALFGEKYGETVRVLSIGS--DRRVSAELCGGTHIRATGEIGYFKIISESSV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ A + L  Q    +               ++E +  E    +   A+
Sbjct: 686 GAGLRRIEAVTGRGAEAWLSEQFTNSRE--------------KLERLQTELDDERRSAAE 731

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L  +           I     ++  + + D + L+ + D L+ ++ S +I+L  + 
Sbjct: 732 LKRELARQRALSLTAGARDIDGGKLLAVEVPDTDMETLRDMADELRGRLGSAVIVLASVQ 791

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            + K   L  VT+DL+ R ++A ++ +  +++ GGGG GG+PH+AQ GG + ++  +A+A
Sbjct: 792 GD-KPVFLAAVTDDLVARGYHAGNIIKRLSQIAGGGG-GGKPHLAQGGGRDKSRLAEALA 849

Query: 891 GVASFLK 897
            V  F++
Sbjct: 850 AVNEFIR 856


>gi|32266358|ref|NP_860390.1| alanyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
 gi|41018183|sp|Q7VHV4|SYA_HELHP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|32262408|gb|AAP77456.1| alanyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
          Length = 892

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/929 (36%), Positives = 506/929 (54%), Gaps = 80/929 (8%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  +L+FF    H++  S  L+P +D +L+FTN+GMV FK+IFTG+   P     T+ 
Sbjct: 5   DIRKQYLDFFASKSHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPAPPRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+     +  
Sbjct: 64  QLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKKEAIAYAWEFVTQVLGFSKDV 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           LY+T+++ D+EA++LW +   +   +I R+   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 124 LYVTIHESDDEAYELWCE--HIEPSRIKRMGDKDNFWQMGDSGPCGPCSEIYVDQGEKYF 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    EG+R++EIWNLVFMQFEQ+    R +LPK SIDTGMGLER+  + + K NN
Sbjct: 182 QSDEDYFGGEGDRFLEIWNLVFMQFEQK-GGVRTLLPKPSIDTGMGLERVIALKEGKINN 240

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIV-------------------NHRVIVDHLRSSSF 284
           +D  LF  L+Q  +++T   Y G++ +                   + RVI DH RS +F
Sbjct: 241 FDTSLFAPLMQCLQKLTNKTYFGDDEIFDRLDLQEAEMIKIKNIQASFRVIADHARSVAF 300

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           L+A G+    EGRGYVLRRI+RRA+ +  LLG  +P +  ++  +C  MG  Y  L + K
Sbjct: 301 LLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLKKPFLWQVVEVVCESMGVHYSYLQERK 360

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-------KDEILNGDVAFKLYDTHGLP 397
             I+E  ++E+ERF +T++ G+ L    L  L        ++ + +G+VAFKLYDT+G P
Sbjct: 361 RAIKEQCKNEEERFFETIESGMTLFSTELEKLQSAVQTQKQEILFSGEVAFKLYDTYGFP 420

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           LD+ QD+L  R    +D+ +F Q + EQ+SR++A   G G    E  + +L  K+G  +F
Sbjct: 421 LDLTQDMLRER-HIQVDMQAFEQCMNEQKSRSKASWKGSGDALKEGDFNALLSKFGENKF 479

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFD 516
           +GY+                       +N  +  +KA++  Q ++V+      +  V+ D
Sbjct: 480 VGYE-----------------------SNKETCKIKALLDSQFKMVDTLSPSSQGWVMLD 516

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-------TEM 569
           +TPFY E+GG +GD G        LQ    QK A+ +                       
Sbjct: 517 KTPFYPESGGPVGDKGALYSTNRILQSAQAQKFAQVLDTQKFFGLNLSQIEALSALKVGQ 576

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +   +D     +++ +HSATHLLH AL TILGSH++Q GS + P  LRFD +H K +T+
Sbjct: 577 EVFAEVDSIR-FEIAKHHSATHLLHLALRTILGSHIAQAGSLVQPHRLRFDFSHPKALTN 635

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            E+  IE+ VN+ I Q+   +   M+ + A A GA AL G KY +RVRVVS         
Sbjct: 636 EEITHIENLVNEQILQSNAQLCENMDMQQAKAKGAMALFGEKYGERVRVVSFGD------ 689

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S  LCGG HV++T EI   YIV ES + +G+RRIEA+ G  A  +      +L      L
Sbjct: 690 SIELCGGIHVNNTAEIGSFYIVKESGVSSGVRRIEAVCGNAAYHYGKNALLELSRARESL 749

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K    +V+  +E+I  +  + +      K + +V+ L   +I  V  +   +  V + E 
Sbjct: 750 KAQ--DVLQGIEKIKMQLNEAK--EKANKAKQSVKSLDYEEINGVRLIVLKLDSVSANEA 805

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           K ++D  + + +S  I+L+  S   K S++  V         A    +  A+ L GG GG
Sbjct: 806 KEIIDRSKNENESVAILLLSESNN-KISIVAGVKNAP---LKAGAWVKQVAQEL-GGNGG 860

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GR   A +GG + +K  QA+        K
Sbjct: 861 GRDDFATAGGKDIDKISQALNLAKDIATK 889


>gi|54025614|ref|YP_119856.1| alanyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|59798495|sp|Q5YTJ9|SYA_NOCFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|54017122|dbj|BAD58492.1| putative alanyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 888

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/921 (34%), Positives = 480/921 (52%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F + GH  +PS+SLI   DP L+F N+GMV FK  F GQE P Y   
Sbjct: 1   MQTHEIRRRFLDHFVRAGHTEVPSASLILA-DPNLLFVNAGMVQFKPYFLGQEAPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++ VG T RH+TFF+M GNFSFG YFKE AI LAW+L++K     
Sbjct: 60  TSVQKCVRTG----DIEEVGVTTRHNTFFQMAGNFSFGDYFKEGAITLAWELISKPQSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D  R+++T Y +D EA ++W +++G+  ++I      DN+W M   GP GPCSEI+
Sbjct: 116 GFGFDPERIWVTAYQDDPEAAEIWHRMAGIPKERIQFRDGKDNYWDMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           FD+G    G   G   + +RY+EIWNLVFMQ  +      Q       LPK +IDTGMG+
Sbjct: 176 FDRGPAY-GKDGGPVADEDRYLEIWNLVFMQDVRGELSPKQGHPPIGSLPKKNIDTGMGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E++TG +Y  E  + V  RVI DH R+++ LI+D
Sbjct: 235 ERVAMLLQGVDNVYETDLLRPIIGKAEELTGRRYGAEHASDVRFRVIADHARTAAMLISD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RR +  ARLLG  +P+M   +  +   M  +YPEL      I 
Sbjct: 295 GVNPGNDGRGYVLRRLLRRIVRSARLLGAEKPVMAEFMQVVSDLMSPSYPELATDFDRIR 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F KTL  G  L D   +         + G  AF L+DT+G P+D+  ++  
Sbjct: 355 TVAVGEETAFLKTLTTGSTLFDNTAAAVKAKGGTKIAGADAFTLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL+ +D   F   + EQR RA+  +        +   +      GAT+F G+D L   
Sbjct: 415 EAGLS-VDEEGFRSLMAEQRRRAKEDAAARKHAHADLSIYKELVDRGATEFTGFDELTS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++  G  V  A  GQ VEV+ D++P YAE+GG
Sbjct: 473 ----------------------EAHVLALIADGVRVPTATQGQDVEVILDRSPLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G     G++L++ DVQK A+ ++VH   VE+G +     ++   D   RR  +  
Sbjct: 511 QIADRGSITASGLKLRVNDVQKIAKKLWVHKTTVEQGQITEGDVVLAQADPAWRRGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD      ++  +   IE   ND +  +
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSEQQKADIEAVSNDAVGAD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            PV T + +   A   GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +I 
Sbjct: 631 FPVNTFVTDLPKAKQMGALALFGENYGDEVRVVEI----GGPFSMELCGGTHVQHSSQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RR+EA  G  +  +L  +   L  +AS LKV    V  RVE++ E 
Sbjct: 687 PITLLGESSVGSGVRRVEAFVGLDSYKYLAKERALLAGVASSLKVPSEEVPARVEQLVER 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNF-MSHIISEVDSKELKSVMDALQKKI 820
            +  +    + K+   +           ++  V    +     V + +L+++   ++ + 
Sbjct: 747 LKVAEKELERTKIAAVLSSAGKFVEEAERVGRVLLVAAAAPEGVAAGDLRTLATDIRGRF 806

Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            S   +++L+G + + K   ++ V +   +    A +L       +  G GGG+P MAQ 
Sbjct: 807 GSEPAVVVLLG-NADGKVPFVVAVNKSAQEIGVKAGELVGSFGPSIA-GRGGGKPEMAQG 864

Query: 878 GGPNGNKADQAIAGVASFLKK 898
            G + +     +A V + + +
Sbjct: 865 AGSDPSGIPAGLAAVRARVAE 885


>gi|226949919|ref|YP_002805010.1| alanine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
 gi|226843074|gb|ACO85740.1| alanine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 879

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/908 (36%), Positives = 514/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+  
Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  + ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIRAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +     +IL+GD AFKLYDT+G P+++ ++IL   G   ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E   E   G +  +V   TPFYAE GGQ GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNEMEKGNEGIIVTYNTPFYAEMGGQTGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  IVSE+ 
Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGG GGRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|328950125|ref|YP_004367460.1| alanyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
 gi|328450449|gb|AEB11350.1| alanyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
          Length = 896

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/940 (35%), Positives = 492/940 (52%), Gaps = 91/940 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--P--- 56
              + IR  +L+FF+  GH  LPS SLIP +DPTL+FT +GM P K  F G     P   
Sbjct: 1   MRTAEIREKYLKFFESKGHLALPSFSLIPEDDPTLLFTVAGMAPLKPYFLGARPVFPGHE 60

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             ++ V T QKC+R G    D++NVGRT RH+TFFEMLGNFSFG YFK  AI  AW+ LT
Sbjct: 61  GEHRRVVTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKREAILWAWEFLT 116

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGP 168
             +   LD  RLY+TV+++D+EA+++W+   G+  ++I R   ++NFW     S    GP
Sbjct: 117 SPEWLGLDPDRLYVTVFEDDDEAYRIWRDEVGVPEERIGRFGEDENFWPANAISQGPNGP 176

Query: 169 CGPCSEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNK----QERFILPKM 222
           CGPCSEIF+D+G               G+R++E+WNLVF Q+ +        +   LP+ 
Sbjct: 177 CGPCSEIFYDRGPGFGSADETGPNTGSGDRFVEVWNLVFTQYNRTGPVPGPGQLEPLPQR 236

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSS 282
           +IDTGMGL R+A +LQ+  + YD D F+ +I    +++G  YEG   V+HRVI DH+R+ 
Sbjct: 237 NIDTGMGLYRVAAILQDVQDFYDTDTFRPIIDRVVELSGRPYEGAASVSHRVIADHVRAV 296

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
              ++DG + +N GRGYV+RR++RRA+ +  LLG  EP M  L P +   +G  YPE+  
Sbjct: 297 VAALSDGAVFSNTGRGYVIRRLLRRAVRHGYLLGLREPFMYRLAPVVAEVLGDYYPEMRD 356

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
                E+ +R E+ERF  TL+ G+  L+ +L  + +  +L+G+ AF+LYDT+G P D+  
Sbjct: 357 NLPATEKAIRLEEERFLTTLESGIRRLEDLLQGIPQGGVLSGEEAFRLYDTYGFPWDLTV 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGY 460
           +I   RG   +D   F +A+  Q+ RAR  S   G     + +   +L    GAT+F GY
Sbjct: 417 EIAAERG-VRVDREGFERAMARQQERARKASAFTGEVFVKSAEALDTLVAARGATEFTGY 475

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
             L                            V  I++    +E A +G++V+VV D+TPF
Sbjct: 476 TTLED-----------------------EGEVLLILEGEAELERAEAGREVQVVLDRTPF 512

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE GGQ+GD G     G R ++   +K  +GI +H   VE G+L     +   +D   R
Sbjct: 513 YAEGGGQIGDFGYLEWAGGRARVVTTRKSPQGIHLHQVRVEEGVLEPGRRVRAVVDPARR 572

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P++  EL+ IE  VN
Sbjct: 573 -ATERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLSLEELERIERLVN 631

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSAL 693
             +  + PV       E+A   GA AL G KY D VRVVSVE         D  V S  L
Sbjct: 632 RWVQADFPVTWTYKPLEEAKREGAMALFGEKYADVVRVVSVEGSPDVRGILDAPVTSKEL 691

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG HV  TGEI    I SE ++ AG+RRIEA+TG+ A +   G   + ++LA  L  + 
Sbjct: 692 CGGCHVRRTGEIGYFVIRSEEALAAGVRRIEALTGEAAVAFARGLLNRTQALARELGTTV 751

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSK 807
             V  RV+++ EE +       + K +L    L         +     +++  +S +D  
Sbjct: 752 EAVPERVQKLQEELKARGREIERLKAELARAQLGTGGKAEAREAGGWRYLAAELSGLDMN 811

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR--------- 857
            L+   D L +      + LV +  +    +++ V+    +R   A  + +         
Sbjct: 812 ALRRAADELLEARG---VDLVAVGADG--MLVVKVSPAAQERGLAAGRVMKALAEAAGGR 866

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
              +             AQ GG +     +A A +   L+
Sbjct: 867 GGGREAL----------AQGGGFD---LKRAFAALEEVLR 893


>gi|205830052|sp|A1R709|SYA_ARTAT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 892

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/926 (35%), Positives = 491/926 (53%), Gaps = 64/926 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +++FF   GH  +PS+SL+  +DP+L+FT +GMVPF    T +E+P Y   
Sbjct: 1   MKSQEITKRWVDFFVNKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEPPYSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ A++LLT      
Sbjct: 60  TSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAFELLTTSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L   RL++TVY+ED+EA +LW K +G+ A++I R+   DN+WS  + GP GPCSEI+
Sbjct: 116 GYGLPAERLWVTVYEEDDEAKELWLKNTGIPAERIQRMGKADNYWSTGQPGPAGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   +  RYIEIWNLVFMQ++      + +      LP+ +IDTG+G+
Sbjct: 176 YDRGPAY-GIEGGPLADETRYIEIWNLVFMQYQIENVRSKVDFDIVGELPQKNIDTGLGM 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281
           ER+A +LQ   N Y+ D  + +I  + +++G +Y            + V  RV+ DH+RS
Sbjct: 235 ERLAMILQGVENMYETDQVRPVIDKAAELSGREYTSAESPEDPHHTDDVRMRVVGDHIRS 294

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LIADG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP + 
Sbjct: 295 ALMLIADGVAPSNEGRGYVLRRLIRRAVRAMRLLGVEKACLPDLLPASRDAMKGVYPVVE 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDI 400
                I     +E++ F +T+  G   L+  ++      + L+G  AF L+DT+G P+D+
Sbjct: 355 TDFARISRIAYAEEKAFLRTIASGTARLEDAVAESKAAGVPLSGADAFALHDTYGFPIDL 414

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D   F   + EQR RA+A + G   G  +   +      G T F GY
Sbjct: 415 TLEMAEEAGL-QVDEAGFRALMLEQRQRAQADAKGKKGGHADLSAYQELLGKGETVFTGY 473

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D L G                        + V+ IV  G  V  A +G ++E+V ++TPF
Sbjct: 474 DELEG-----------------------EAKVRGIVSGGRAVAHASTGDEIELVLNETPF 510

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAEAGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G + ++  +   +D + R
Sbjct: 511 YAEAGGQSADTGLITGDGFVVEVLDVQRPIKGLSVHKAIVREGEIGSDALVRAAVDRERR 570

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                 H+ TH++H AL  ILG   +Q GS      LRFD    + +++A    IE+  N
Sbjct: 571 HAAEQAHTGTHIVHAALHQILGPEATQRGSYNKAGYLRFDFAWGEGLSTATRSEIEEVSN 630

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  N  V T++M   +A A GA AL G  Y   VRVV +     G  S  LCGGTHVS
Sbjct: 631 IAIRNNFRVDTKVMGLAEAKALGAMALFGENYGSEVRVVEI----DGAWSRELCGGTHVS 686

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  I  L ++ E S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R+
Sbjct: 687 NTSLIGSLSLLGEQSVGSGNRRVEAFVGLDAFRHLAAERALVSELTELLKVPSGQLADRI 746

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV-DSKELKSVMD 814
                + +  +    + + +      +         A V  ++H   +V  + +L+++  
Sbjct: 747 SSTLNKLKATEKELDRLRKEQLAAAAANLVGTAKDAAGVRVVAHDAGQVGGADDLRNLAL 806

Query: 815 ALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            L+ ++ S    + + G+S ++   ++            A  L RL+A +LGGGG GG+ 
Sbjct: 807 DLRNRLGSEASTVAVAGVSNDRPVILIATNEAAREAGVKAGALVRLAAGILGGGG-GGKD 865

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            +AQ GG +  K  +A+  V   + K
Sbjct: 866 DVAQGGGTDAGKVSEALTAVVDAIAK 891


>gi|254457078|ref|ZP_05070506.1| alanyl-tRNA synthetase [Campylobacterales bacterium GD 1]
 gi|207085870|gb|EDZ63154.1| alanyl-tRNA synthetase [Campylobacterales bacterium GD 1]
          Length = 849

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/896 (37%), Positives = 493/896 (55%), Gaps = 54/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF+   H+ + S+ L+P +D +L+F N+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIREEYLKFFESKNHDRIASAPLVP-DDASLLFNNAGMVPFKSIFTGEIPRPANPRATSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L   +
Sbjct: 61  QTCLRAGGKHNDLENVGHTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITEVIKLPVDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++TV++ D+EA  LW+K   +S D+I+R+  +DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LWVTVHESDDEAELLWQK--HVSKDRILRLGDDDNFWQMGDTGPCGPCSEIFYDQGAENF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + +   +N
Sbjct: 179 SGEEDYLGGDGDRFLEIWNLVFMQYEKSADGTMTELPKPSIDTGMGLERVVAIKEGALSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y   LF  +I   +++ G +YE  +  ++RVI DH+R++ FL+A GI  +NEGRGYVLRR
Sbjct: 239 YGSSLFMPIIVDVQKLIGKEYEYVSGASYRVIADHIRTTVFLLAQGINFSNEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ E  M  L+  +   MG  Y  L      ++E +  E+ RF KT++
Sbjct: 299 ILRRAVRHGYLLGFREAFMYKLVDTVVEIMGGEYDYLTVKATAVKEQIELEEARFFKTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  +  L   E  +G+VAFKLYDT G PLD+ +D+L  + L  +D   F + + 
Sbjct: 359 SGIALFEEEV--LSTKETFSGEVAFKLYDTFGFPLDLTEDMLKGKNLK-LDSAKFEELML 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR+RA+A   G G   T   +  L EK+G   F+GY+ +  S                 
Sbjct: 416 EQRTRAKAAWKGSGDADTHGDFKELLEKFGENTFVGYEFMAHSC---------------- 459

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                   V+A++ +  + V       K  V+ D TPFYAE+GGQ GD G   G      
Sbjct: 460 -------KVQALLDENFKSVSSLSPDTKGWVLLDITPFYAESGGQTGDCGELEGFAKVED 512

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                            ++ G       +V      +R +++ +HSATHLLH  L  +LG
Sbjct: 513 TRKFFGLNLSQISVIDELKIGT------VVDAKVDISRNEITKHHSATHLLHAILYDVLG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            H+SQ GS +  D LRFD +H K +T  EL  IE  VN+ + + +P  T++M  EDA  S
Sbjct: 567 DHISQAGSLVESDRLRFDFSHPKALTQTELVEIETRVNNDVLRAIPANTQVMGIEDAKNS 626

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A  G KY D VRVVS +       S   CGG HV +T  I    I  ES + AG+RR
Sbjct: 627 GAKAQFGEKYGDEVRVVSFDR-----ASVEFCGGVHVDNTANIGSFIITKESGVSAGVRR 681

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ GQ A  +   Q   +K + + +K    +V+  +  +     +L+    + +    
Sbjct: 682 IEAVCGQAAYKYFCEQRSLVKEVEAEVK--NLDVLAGISRLKSNIAELKTELKEAQESSK 739

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
           VE        ++N ++ ++ E+ S ++K  +D L+ + +    ML  +  + K  +   +
Sbjct: 740 VE----ITANEINGVAVVVEELASGDIKEKIDELKNQNEKLCAMLFQVKGD-KVLIAAGI 794

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                    A D  +  A +LGGGG GGRP  AQ+GG +  K  +A      F+ +
Sbjct: 795 KN---ADAKAGDWIKEIAPILGGGG-GGRPDFAQAGGKDKTKLPEAKVEALKFITE 846


>gi|119961931|ref|YP_948021.1| alanyl-tRNA synthetase [Arthrobacter aurescens TC1]
 gi|119948790|gb|ABM07701.1| alanyl-tRNA synthetase [Arthrobacter aurescens TC1]
          Length = 918

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/926 (35%), Positives = 491/926 (53%), Gaps = 64/926 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +++FF   GH  +PS+SL+  +DP+L+FT +GMVPF    T +E+P Y   
Sbjct: 27  MKSQEITKRWVDFFVNKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEPPYSRA 85

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ A++LLT      
Sbjct: 86  TSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAFELLTTSVDDG 141

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L   RL++TVY+ED+EA +LW K +G+ A++I R+   DN+WS  + GP GPCSEI+
Sbjct: 142 GYGLPAERLWVTVYEEDDEAKELWLKNTGIPAERIQRMGKADNYWSTGQPGPAGPCSEIY 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   +  RYIEIWNLVFMQ++      + +      LP+ +IDTG+G+
Sbjct: 202 YDRGPAY-GIEGGPLADETRYIEIWNLVFMQYQIENVRSKVDFDIVGELPQKNIDTGLGM 260

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281
           ER+A +LQ   N Y+ D  + +I  + +++G +Y            + V  RV+ DH+RS
Sbjct: 261 ERLAMILQGVENMYETDQVRPVIDKAAELSGREYTSAESPEDPHHTDDVRMRVVGDHIRS 320

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LIADG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP + 
Sbjct: 321 ALMLIADGVAPSNEGRGYVLRRLIRRAVRAMRLLGVEKACLPDLLPASRDAMKGVYPVVE 380

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDI 400
                I     +E++ F +T+  G   L+  ++      + L+G  AF L+DT+G P+D+
Sbjct: 381 TDFARISRIAYAEEKAFLRTIASGTARLEDAVAESKAAGVPLSGADAFALHDTYGFPIDL 440

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D   F   + EQR RA+A + G   G  +   +      G T F GY
Sbjct: 441 TLEMAEEAGL-QVDEAGFRALMLEQRQRAQADAKGKKGGHADLSAYQELLGKGETVFTGY 499

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D L G                        + V+ IV  G  V  A +G ++E+V ++TPF
Sbjct: 500 DELEG-----------------------EAKVRGIVSGGRAVAHASTGDEIELVLNETPF 536

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAEAGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G + ++  +   +D + R
Sbjct: 537 YAEAGGQSADTGLITGDGFVVEVLDVQRPIKGLSVHKAIVREGEIGSDALVRAAVDRERR 596

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                 H+ TH++H AL  ILG   +Q GS      LRFD    + +++A    IE+  N
Sbjct: 597 HAAEQAHTGTHIVHAALHQILGPEATQRGSYNKAGYLRFDFAWGEGLSTATRSEIEEVSN 656

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  N  V T++M   +A A GA AL G  Y   VRVV +     G  S  LCGGTHVS
Sbjct: 657 IAIRNNFRVDTKVMGLAEAKALGAMALFGENYGSEVRVVEI----DGAWSRELCGGTHVS 712

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  I  L ++ E S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R+
Sbjct: 713 NTSLIGSLSLLGEQSVGSGNRRVEAFVGLDAFRHLAAERALVSELTELLKVPSGQLADRI 772

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV-DSKELKSVMD 814
                + +  +    + + +      +         A V  ++H   +V  + +L+++  
Sbjct: 773 SSTLNKLKATEKELDRLRKEQLAAAAANLVGTAKDAAGVRVVAHDAGQVGGADDLRNLAL 832

Query: 815 ALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            L+ ++ S    + + G+S ++   ++            A  L RL+A +LGGGG GG+ 
Sbjct: 833 DLRNRLGSEASTVAVAGVSNDRPVILIATNEAAREAGVKAGALVRLAAGILGGGG-GGKD 891

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            +AQ GG +  K  +A+  V   + K
Sbjct: 892 DVAQGGGTDAGKVSEALTAVVDAIAK 917


>gi|295839933|ref|ZP_06826866.1| alanine-tRNA ligase [Streptomyces sp. SPB74]
 gi|295827712|gb|EDY43697.2| alanine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 866

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/902 (36%), Positives = 496/902 (54%), Gaps = 62/902 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH+++PS+SLI  +DPTL+   +GMVPFK  F G+ KP     
Sbjct: 1   MESAEIRRRWLRFFEERGHKVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F L+  RL+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GFGLEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+       + +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + +I  + ++TG+ Y     + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVRNMYETDTLRVVIDKATELTGVAYGAAVASDVSLRVVSDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  +E
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRVE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  +LD  ++        +L G+ AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTETRATGSTVLPGEKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A S    +G  +   +  + +  GAT F GY  L G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------EARIVGLLVDGVPAPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG   + +G  ++I DVQK   G+ VH   V+ G +  +  +   ID   RR ++
Sbjct: 511 GQIGDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQTRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 REMDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A   L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYHFLAREHTVVSQLQELVKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    + + +  ++           +     ++  +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIERFRAEKVLQAAAGLAAGAKDVHGTALVTGQVPDGTGADDLRRLVLDVRG 805

Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      ++ L  ++  +  +V+          F A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIPGDRPAVVALFAVTGGRPVTVVATNEAARERGFKAGDLVRTAAKALGGGG-GGKPDVA 864

Query: 876 QS 877
           Q 
Sbjct: 865 QG 866


>gi|228471913|ref|ZP_04056683.1| alanine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228276765|gb|EEK15471.1| alanine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 877

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/925 (35%), Positives = 485/925 (52%), Gaps = 78/925 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP  + V
Sbjct: 1   MTSQEIRELFLKFFESKGHVIVPSAPMVIKNDPTLMFTNAGMNQFKEFFLGNAKPKQKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI  AW+LLT+ + + 
Sbjct: 61  VDTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAITWAWELLTEVYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++         D+EA+ +WK+   ++ D I+     DNFW M + GPCGPCS
Sbjct: 121 KENLYVTVFEGSPEEGVPFDQEAYDIWKER--IAEDHILLGNKKDNFWEMGDQGPCGPCS 178

Query: 174 EIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D      +    G    + +  + IEIWN VFM+F ++       LP  ++DTGMG
Sbjct: 179 EIHVDIRSDGEKAKVAGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPAQNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
            ER+  VLQ K +NYD D+F  LI   E++T  +Y         +    +  RVI DH+R
Sbjct: 239 FERLCMVLQGKQSNYDTDVFTPLIHKVEEITKTRYTNGIQLTPEQEQINIAIRVISDHIR 298

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + SF IADG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L+  L  +MG  +PE
Sbjct: 299 AVSFAIADGQLPSNNGAGYVIRRILRRAIRYGFTFLGQKEPFIYKLVETLTKQMGGTFPE 358

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +  LLI   ++ E+  F +TL++GL++LD ++ +    + L+G  AF+LYDT+G P D
Sbjct: 359 LEKEFLLIVSVIKEEEASFLRTLEQGLLMLDVMIQNASDKQ-LSGSKAFELYDTYGFPKD 417

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   IL  RG+  +D  SF + L++Q+ R+RA      +      W  L++     +FIG
Sbjct: 418 LTALILSERGMT-LDEASFEEHLQKQKERSRAA-----AQVKAGDWVVLRDDEEE-EFIG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L     + + RK                           VE    G   ++VF+ TP
Sbjct: 471 YDTLEAMVRLVKYRK---------------------------VESQKDGTLYQLVFNTTP 503

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ+GD G        L      KK   + +H A  E             +    
Sbjct: 504 FYPEGGGQVGDRGTLQAANGELIYITDTKKENNLIIHIA--EHLPENLNDPFKAEVHPMG 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R     NHSATHLLH AL  +LG+HV Q GS ++P+ LRFD +H   +T  EL  +E  V
Sbjct: 562 RALAQSNHSATHLLHQALREVLGTHVEQKGSHVSPEALRFDFSHFAKLTPEELTEVERLV 621

Query: 640 NDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I + +P+   R +  + A+ +GA AL G KY ++VR++          S  LCGGTH
Sbjct: 622 NKRIYEKIPLEEHRNIPIQQALEAGAMALFGEKYGEKVRMIQFGE------SRELCGGTH 675

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG+I    IVSE ++ AG+RRIEAIT   A  H + Q++ L+ +   LK +  + + 
Sbjct: 676 VKNTGDIWFFKIVSEGAVAAGVRRIEAITNAGALKHFLLQEKLLEEIKGSLK-NPQDPIK 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVM 813
            +  + EE  +L     + K +   +           I+ V  ++  + ++D   LK + 
Sbjct: 735 SITNLQEENARLHKELEQLKREQAKQLKGELKGEFVTISGVQCLTKRL-DLDIATLKDLA 793

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR 871
             L ++++   I+     ++ KA +L  + ++L      +A  + R   K + GGG GG+
Sbjct: 794 FMLGEEVKDAFILFGATQEDGKALLLCYINKELTQSKGLDAGKIVRELGKYIQGGG-GGQ 852

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P  A +GG       +A+  V + L
Sbjct: 853 PFFATAGGRKPEGIAEALEKVKTLL 877


>gi|313888208|ref|ZP_07821882.1| alanine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845898|gb|EFR33285.1| alanine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 870

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/908 (38%), Positives = 519/908 (57%), Gaps = 50/908 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    +  IRT FL+FF+  GH +LPS SLIP ND +L+   +GM P K  FTG+E P  
Sbjct: 1   MKYLGLHDIRTEFLKFFESKGHFILPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEEIPPA 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D+DNVG T+RH TFFEMLGNFSFG YFK   I  AW+ LT   
Sbjct: 61  KRVTTCQKCIRTG----DIDNVGLTDRHATFFEMLGNFSFGDYFKHEVIPWAWEFLTVNL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ +  L++TVY ED+EA+ +WK + G+  +KIIR+   DNFW + E GP GPCSEI+ D
Sbjct: 117 EIPKEDLWVTVYYEDDEAYNIWKDVVGIDEEKIIRLGKEDNFWEL-EVGPSGPCSEIYVD 175

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +G            EG+R+IE+WNLVF QF++  +     L   +IDTGMGLER+ATVLQ
Sbjct: 176 RGLEHGSEDERPGGEGDRFIEVWNLVFTQFDKDEEGNYKPLAHPNIDTGMGLERIATVLQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID  K +IQ   +V+G KY  +    ++ RVI DH+R+ +F+I+D I+P+NEG
Sbjct: 236 GTDNIFEIDAIKDIIQEIAKVSGKKYGQDKNADISFRVITDHIRAMTFMISDTIVPSNEG 295

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + R LG     +  +   +    G  Y EL + +  I+E +R E+E
Sbjct: 296 RGYVLRRLIRRAARHGRKLGIERAFLYEIADMVINSWGEQYTELKENRESIKEIIRREEE 355

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F +T+D GLV L   +  +    +++L+G+ AFKLYDT+G P+D+ ++IL   G   +D
Sbjct: 356 KFLETIDGGLVRLKAHIDEMKENNEKLLDGEKAFKLYDTYGFPIDLTEEILREDGY-DVD 414

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F + +++Q+ RAR        G   +    L E     +F+GY+             
Sbjct: 415 MEGFQKEMDDQKRRAREARNDSNVGWANQDNKHLFEGLSD-EFLGYE------------- 460

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      +   + +  I+   EIV+    GQ+  VV D+T FY E+GGQ+GDTG  
Sbjct: 461 ----------KDECDANITRIIADDEIVDSLEEGQEGLVVLDKTTFYGESGGQVGDTGEI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I D  +L++TD +K  +G+ +H   VE G L     +   ID + R  +  NHS THLLH
Sbjct: 511 ISDNFKLRVTDTKKTKDGLHLHLVKVEEGRLEK-APVKAIIDSKRRNNIRRNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV+Q GS +  D +RFD +H   +T  E+  +E  VN+ I + LPV T++ 
Sbjct: 570 RALKDVLGSHVNQAGSLVMADRMRFDFSHFDAMTKEEIAEVERRVNEKIFEGLPVETKVT 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A   GA  L   KY D+VRV+S+     G +S  LCGGTHVS+T EI +  I+SES
Sbjct: 630 GLEEAKEMGAIGLFEGKYQDQVRVLSM-----GDYSRELCGGTHVSNTSEISMFKILSES 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I  G+RRIE+ITG     +L     K + +AS LK ++  ++ +++   +  ++     
Sbjct: 685 GISNGVRRIESITGPAVYEYLNNLSAKEEEIASELKSNKDEIIQKIKLNIKNLKEANKNL 744

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K +  L  + +S       +   + ++      VD   L+ + D ++ K+ S +++L  
Sbjct: 745 EKLEHDLAKDQISDITGDVREKNGIKYVIKKFDGVDVNTLRDLADEVRNKLGS-VVVLFA 803

Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + +  V++DL+  +  A  L +  AKV GGGG GGRP MA +G  + +K ++A
Sbjct: 804 AVNDDKLNFVCAVSKDLVDKKIAAGKLIKKIAKVAGGGG-GGRPDMATAGAKDLDKVEEA 862

Query: 889 IAGVASFL 896
           +  +   L
Sbjct: 863 LNKLDELL 870


>gi|168180547|ref|ZP_02615211.1| alanyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|182668624|gb|EDT80603.1| alanyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
          Length = 879

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/908 (36%), Positives = 515/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+  
Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +     +IL+GD AFKLYDT+G P+++ ++IL   G   ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFKGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E   E   G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  IVSE+ 
Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGIFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGG GGRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|315160222|gb|EFU04239.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0645]
          Length = 880

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W+   GLS D I  I   DNFW +   GP GP +EIF
Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F    +     LP  +IDTGMGLE
Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +     + L+G + FKLYDT G P+++ +++  
Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L   
Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTYD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+Q   +V EA +G   E++F +TPFYAE GG
Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    V  KKA      H +     L       L +D + R ++  
Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I
Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R LQ  + +   +L  +           I  V +++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   ++++K S+L  +T+D+      A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+A V ++L
Sbjct: 860 GKNPEGIADALAEVENWL 877


>gi|207744018|ref|YP_002260410.1| alanyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206595420|emb|CAQ62347.1| alanyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
          Length = 825

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/799 (42%), Positives = 470/799 (58%), Gaps = 52/799 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 14  MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGSDKRPYVRA 73

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 74  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 134 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  I GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 194 IFYDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 253

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 254 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 311

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + 
Sbjct: 312 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVV 371

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT G PLD+ QD+  
Sbjct: 372 DVLRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDVCR 431

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 +D  +F+ A+  QR +ARA      +  T      L      T F GYD L   
Sbjct: 432 E-NDVIVDEAAFDAAMNRQREQARAAGKFKLAAGT------LDYTGDKTTFHGYDQLVRE 484

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+    GQ   VV D TPFYAE+GG
Sbjct: 485 ----------------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGG 522

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 523 QVGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRN 582

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 583 HSATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 642

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                +IM  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 643 AATHAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 697 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQ 756

Query: 767 YRKLQLIHAKRKLQLNVED 785
            + L+    + K +L    
Sbjct: 757 VKTLEKELERLKSKLAASQ 775


>gi|30688660|ref|NP_680210.2| EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/
           ligase, forming aminoacyl-tRNA and related compounds /
           nucleic acid binding / nucleotide binding [Arabidopsis
           thaliana]
 gi|322510075|sp|Q9FFC7|SYAP_ARATH RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS;
           AltName: Full=Protein EMBRYO DEFECTIVE 1030; AltName:
           Full=Protein EMBRYO DEFECTIVE 263; AltName: Full=Protein
           EMBRYO DEFECTIVE 86; Flags: Precursor
 gi|332005698|gb|AED93081.1| alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 978

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/928 (34%), Positives = 482/928 (51%), Gaps = 71/928 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  SIR  FLEFF   GH++LPSSSL+P  DPT++ T +GM+ FK IF G+        T
Sbjct: 79  SGDSIRRRFLEFFASRGHKVLPSSSLVPE-DPTVLLTIAGMLQFKPIFLGKVPREVPCAT 137

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+C+R     NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L  
Sbjct: 138 TAQRCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEFGLPA 193

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+++++Y++D+EAF++WK   G+S ++I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 194 NRVWVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPE 253

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                     +  R+IE +NLVFMQ+ +        L + +IDTG+GLER+A +LQ+  N
Sbjct: 254 RGYDEDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPN 313

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I    ++  + Y+  N     + +VI DH+R+  +LI+DG+ P+N GRGY
Sbjct: 314 NYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMRAVVYLISDGVSPSNIGRGY 373

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMH--------LLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RRA+   + LG    +  +        +   +         ++      I E +
Sbjct: 374 VVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIELSTYIDSDVKLKASRIIEEI 433

Query: 352 RSEDERFGKTLDRGLVLLDGVL-------SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           R E+  F KTL+RG  LLD  L               L+G  AF LYDT G P++I  ++
Sbjct: 434 RQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGKDAFLLYDTFGFPVEITAEV 493

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG   ID+  F   +E QR +++A    +     +     + +    T+F+GYD L 
Sbjct: 494 AEERG-VSIDMNGFEVEMENQRRQSQAAHNVVKLTVEDDA--DMTKNIADTEFLGYDSL- 549

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    ++VK+++  G+ V     G +VEV+ D+TPFYAE+
Sbjct: 550 ----------------------SARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTPFYAES 587

Query: 525 GGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           GGQ+ D G             +      +K+  IFVH   V+ G L     +   +D   
Sbjct: 588 GGQIADHGFLYVSSDGNQEKAVVEVSDVQKSLKIFVHKGTVKSGALEVGKEVEAAVDADL 647

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R++  ++H+ATHLL  AL  ++G   SQ GS +  D LRFD   ++ +   EL+ IE  +
Sbjct: 648 RQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELEEIECLI 707

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I     + T+++   DA  +GA A+ G KY+ + VRVV V        S  LCGGTH
Sbjct: 708 NRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVPG-----VSMELCGGTH 762

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++  L S LKV   +V  
Sbjct: 763 VGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEDVTN 822

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD--------VNFMSHIISEVDSKELK 810
           RVE + EE R  +   +  + +  V   S              +  +   + + D+  LK
Sbjct: 823 RVENLLEELRAARKEASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDTDADSLK 882

Query: 811 SVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868
           S  + L   ++  + +++G S E  K S++   +  ++     A       AK+ GGGG 
Sbjct: 883 SAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGPIAKLCGGGG- 941

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG+P+ AQ+GG        A+      L
Sbjct: 942 GGKPNFAQAGGRKPENLPSALEKAREDL 969


>gi|84496692|ref|ZP_00995546.1| alanyl-tRNA synthetase [Janibacter sp. HTCC2649]
 gi|84383460|gb|EAP99341.1| alanyl-tRNA synthetase [Janibacter sp. HTCC2649]
          Length = 897

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/924 (35%), Positives = 494/924 (53%), Gaps = 67/924 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF+KNGH ++PS+ LI  +DP L+F N+GMVPFK  F+GQE P ++  
Sbjct: 1   METAEIRRRWLAFFEKNGHTVVPSAPLI-HDDPNLLFVNAGMVPFKPYFSGQETPPWERA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++ VG+T+RH TFF+M GNFSFG YFK+ AI+ AW LLT      
Sbjct: 60  TSVQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKKDAIRFAWQLLTTSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ TVY++D+EA +LW + + +  D+I+R    DN+W M   GP GPCSEIF
Sbjct: 116 GYGLDPDRLWATVYEDDDEAERLWAEYTSIPLDRIVRRGKLDNYWHMGVPGPGGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+GE   G   G + + +RY+EIWNLVFMQ E      + +      LP  +IDTGMGL
Sbjct: 176 YDRGEEY-GVEGGPAVDEDRYMEIWNLVFMQEELSQVRAKDDFDIEGPLPAQNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280
           ER+A+VLQ   N Y+ID    ++  + ++TG  Y             + V  RV+ DH+R
Sbjct: 235 ERIASVLQGVDNLYEIDEVYPVLAKAAEMTGKSYGANSGHSAQGSHPDDVRLRVVADHIR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           SS  LI DG+ P NEGRGYVLRR++RRA+   RLLG+ +P + HLLP     M  +YPEL
Sbjct: 295 SSLMLIGDGVTPGNEGRGYVLRRMLRRAVRSMRLLGFEDPALPHLLPISMERMKQSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPL 398
                 I +   +E+E F +TL  G  +LD  +S   +     L GD AF+L+DT+G P+
Sbjct: 355 ETGFERISKIAYAEEEAFRRTLASGTTILDTAVSRTKESGGTTLAGDQAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++    GL  +D   F + + EQR+RA+A +    SG      +      G T F 
Sbjct: 415 DLTLEMAEEHGLT-VDREGFTRLMLEQRNRAKADAKSKKSGHANTEVWKELRTSGETDFR 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
            +  L                          + V  +V  G  VEE   GQ+ +VV D+T
Sbjct: 474 AWQELTS-----------------------EAKVVGLVVDGVRVEEIEPGQQGQVVLDRT 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE+GGQ+ D G    DG+ L++ DVQ+  +G+  H   V  G LR   +++  +D +
Sbjct: 511 PFYAESGGQIADEGIITADGVHLKVMDVQRPVKGLIAHTVEVVHGPLRAGSAVLAEVDPE 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      HS TH++H AL  +LG    Q+GS   P  LR D    + ++      IE+ 
Sbjct: 571 WRISACQAHSGTHVIHAALRQVLGPSALQSGSYNKPGYLRLDFAWGQALSPETRSEIEEV 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  + ++LPV  + M+   A  +GA AL G  Y + VRVV +    GG  S  LCGGTH
Sbjct: 631 ANLAVRKDLPVSAQWMSLAQAREAGALALFGETYGEDVRVVEI----GGPWSRELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  + ++  L +  ESS+ +G+RR+EA  G  A  +L  +   +  L+  +    G +  
Sbjct: 687 VGHSSQVGALTVTGESSVGSGVRRLEAFVGMDALRYLARERAIVAELSGIVGAQPGELTE 746

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE-VDSKELKSV 812
           RV  +    +  +    + + Q  +        +   +  V F+ H       + +++++
Sbjct: 747 RVGAMVARLKDAERELERTRKQAVLAAAGSLSDNAKDVGGVRFVGHDAGGEAGADDVRAM 806

Query: 813 MDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           +   ++K+      ++ + G +K +   V+            A +L R++A+ LGGGG G
Sbjct: 807 VLDARQKLGDAAPSVVAVTGGAKGRPVVVIATNQAARDKGIKAGELVRIAAQTLGGGG-G 865

Query: 870 GRPHMAQSGGPNGNKADQAIAGVA 893
           G+  +AQ GG +  K+ +AI  V 
Sbjct: 866 GKDDIAQGGGQDIAKSGEAINAVE 889


>gi|302874705|ref|YP_003843338.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307690682|ref|ZP_07633128.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302577562|gb|ADL51574.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 879

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/907 (34%), Positives = 508/907 (56%), Gaps = 48/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG  KP    +
Sbjct: 4   MGLNELREAYLKFFESKEHLRLPSYSLVPKNDKSLLLINAGMAPLKPYFTGLSKPERNRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + 
Sbjct: 64  TTCQKCVRTG----DIENVGITSRHATFFEMLGNFSFGDYFKNEVIPWAWEFVTEVLKMP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L++T+Y ED+EA+++W   + +    I R+   DNFW     GPCGPC+EI F++G 
Sbjct: 120 KDKLFVTIYLEDDEAYEIWTTKTDVDKSHIFRLGKKDNFWEHG-AGPCGPCTEIHFNRGN 178

Query: 182 CI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +        ++ + ++ IE WNLVF QF+   +     L   +IDTG GLER+A ++Q 
Sbjct: 179 AVVTTAEEFEAAADEDKIIEFWNLVFTQFDGDGEGNYEKLKSTNIDTGAGLERLAAIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K + +++D   +++    +V G+KY     N ++ R+I DH+RS +FLI+DG++P+NEGR
Sbjct: 239 KESIFEVDTMNNILTEVTKVAGIKYGDNAKNDISIRIITDHVRSVTFLISDGVMPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG  E  + ++   +  +   AYPEL +    I++ +R E++R
Sbjct: 299 GYVLRRLLRRAARHGKQLGIKEAFLCNICDVVIRDSKEAYPELDEKADYIKKVIRLEEDR 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +  + ++    L G+ AFKLYDT+G P+++ Q+IL       ID 
Sbjct: 359 FRETIDSGMEILMSYVEEMKQENSDTLAGEKAFKLYDTYGFPIELTQEILEEMNYK-IDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + + +QR RAR+         T+        +   T+F GY               
Sbjct: 418 DGFTKEMNDQRERARSARETSNYMGTDIKVLDTISQDIKTEFDGY--------------- 462

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       ++S V  I++  E V     GQK  ++ + TPFYAE GGQ+GDTG   
Sbjct: 463 --------GKTKLTSKVVMIIENDEFVNTIEEGQKGIILAEVTPFYAEMGGQIGDTGEIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +  +  + D +K   G   H+  ++ G L  +  ++L +D + R ++  NH+ATH+++ 
Sbjct: 515 NENFKAIVIDTKKNISGKIAHYVEIKEGKLTLDEEIILQVDEKRRDEIRKNHTATHMINK 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           ALS +LGSHV Q GS +T + LRFD +H   +T  E+  +E  VND I +   V T  M+
Sbjct: 575 ALSLVLGSHVHQAGSLVTAERLRFDFSHFTAMTEEEIFKVEKLVNDEIEKLTEVNTEEMS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A   GA  +   KY+D VRVV+V     G  SS LCGG H+ + G+I L+ I SE+ 
Sbjct: 635 LAVAKEKGAVGIFDDKYSDVVRVVNV-----GDFSSELCGGIHIDNIGKIGLVKITSETG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG RRIEA+ G  A  ++  + + LK  ++ LK     +V R++ +  + +  +    
Sbjct: 690 IAAGTRRIEAVVGANAIQYMEEKAQLLKEASALLKTMPNEIVQRIQLLLSDVKDKEKEIE 749

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K K +L   +      S  ++  +   ++ +  +D+  L+ + D ++ K+  G+++L  +
Sbjct: 750 KLKSKLASGEEENILASVKEVKGIKVAAYALKGIDANGLRELADKVRDKVGDGLVVLGSV 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             ++K S++ + T++ +++  +   + +  + ++GGGG GGRP MAQ+GG +  K ++AI
Sbjct: 810 M-DEKVSLVAMATKEAVNKGIHCGKIIKEISAIVGGGG-GGRPDMAQAGGKDPAKVEKAI 867

Query: 890 AGVASFL 896
             V + +
Sbjct: 868 GEVLNIV 874


>gi|300860344|ref|ZP_07106431.1| alanine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|300849383|gb|EFK77133.1| alanine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|315145691|gb|EFT89707.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2141]
          Length = 880

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W+   GLS D I  I   DNFW +   GP GP +EIF
Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F    +     LP  +IDTGMGLE
Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +     + L+G + FKLYDT G P+++ +++  
Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L   
Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+Q   +V EA +G   E++F +TPFYAE GG
Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    V  KKA      H +     L       L +D + R ++  
Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I
Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R LQ  + +   +L  +           I  V +++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   ++++K S+L  +T+D+      A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+A V ++L
Sbjct: 860 GKNPEGIADALAEVENWL 877


>gi|322806901|emb|CBZ04471.1| alanyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 879

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/908 (36%), Positives = 515/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+  
Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTNIVIENCYKNYPELEEKREYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +     +IL+GD AFKLYDT+G P+++ ++IL   G   ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E   E   G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVTVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIEVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKKVEKVVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  IVSE+ 
Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGG GGRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFIAMATKDTVAKGVHCGKIIKEVAAIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|58584618|ref|YP_198191.1| alanyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|75497910|sp|Q5GSS5|SYA_WOLTR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58418934|gb|AAW70949.1| Alanyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 875

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/892 (42%), Positives = 533/892 (59%), Gaps = 70/892 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F++FF +N H+ + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +  
Sbjct: 1   MKLNEIRERFIKFFVRNNHKQVFSSPLIPEHDPTLMFTNAGMVQFKNIFTGIQKTDIKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+R GGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW  +T+E  LD
Sbjct: 61  VSSQKCLRVGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWKFITEELSLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL IT+Y  D++++++W+K+SG S DKIIRI T+DNFWSM   GPCGPCSEIF+D   
Sbjct: 121 KNRLSITIYHTDDKSYEIWRKVSGFSNDKIIRIATDDNFWSMGNIGPCGPCSEIFYDY-- 178

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                   + +  +R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   
Sbjct: 179 -----AKPNLQNDDRIVEIWNLVFMEFNKDEEGNLQKLPKKCIDTGMGLERVAAVMQNVY 233

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF  LI  S++  G      N   H++I DHLR+++FLIA+G+LP NEGR Y+L
Sbjct: 234 DNYDIDLFSALISKSQEYCG---NVENKAAHKIIADHLRAAAFLIAEGVLPGNEGRNYIL 290

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356
           RR++RRA+ Y   LGY +PL+  + P L        MG  YPELI+AK LIE TL+SE+E
Sbjct: 291 RRLIRRAVRYIHQLGYNDPLLHRIFPVLIDSTSSAYMGGVYPELIRAKSLIETTLKSEEE 350

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            F  TL +G+ LL    + L   + L+G+ AFKLYDT+G PLDI  DIL  R     D  
Sbjct: 351 NFKDTLIKGINLLKKFTTDLKPGDTLSGESAFKLYDTYGFPLDITLDILKER-KINFDQK 409

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A+EEQ+ RARA   G G  + E+IWF+L +K+G T+F+GY+               
Sbjct: 410 GFDNAMEEQKERARAKWTGSGEKSIEQIWFNLIDKFGKTEFVGYE--------------- 454

Query: 477 CQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                   +    + V  I+  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I
Sbjct: 455 -------FSEVKDAKVLVILSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSFI 507

Query: 536 GDGIR---------------------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
              I                      + I +   K   +++H  IV+ G +  +  +  +
Sbjct: 508 IPSITPVLDTKIQKKNDRSCDRITEGIAIVENTNKVNDLYLHRCIVKSGSICKDDIVTAS 567

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D + R+ L  NHSATHLLH AL  ILG HV+Q GS I PD LRFD +H+  +T  +L  
Sbjct: 568 TDKERRQNLRRNHSATHLLHFALRKILGDHVTQKGSLIAPDRLRFDFSHNTQVTRDQLSL 627

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IED VN +I +NL   T+I +   AI  GA AL G KY D+VRVV++        S  LC
Sbjct: 628 IEDMVNSLIRENLSAFTKIQSMNQAIGEGAMALFGKKYGDQVRVVNIGD------SKELC 681

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV  TGEI L  I++E SI +G+RRIEA+TGQ A  +    +  L+ +A  +K    
Sbjct: 682 GGTHVERTGEIGLFKIITECSIASGVRRIEALTGQEAIDYARDNEINLRKIAELVKAPVN 741

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
            +  R+  + +E ++ +        +L + E++   +I  +NF+SH  +++ +  ++   
Sbjct: 742 EITSRLSILNQERKESETKIKSLYKKLVSAENIKSIEINGMNFVSHSFTDIPANIVREF- 800

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
             LQ++    +I    + K  K  +++ V++DL+D+ +  +L       + G
Sbjct: 801 -TLQQQKPKTVIAFTAMEKN-KTVLIVKVSKDLVDKISTKELVSTVTGGVCG 850


>gi|257078902|ref|ZP_05573263.1| alanyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|294779572|ref|ZP_06744966.1| alanine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|256986932|gb|EEU74234.1| alanyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|294453362|gb|EFG21770.1| alanine--tRNA ligase [Enterococcus faecalis PC1.1]
          Length = 880

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/918 (37%), Positives = 507/918 (55%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W+   GLS D I  I   DNFW +   GP GP +EIF
Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F    +     LP  +IDTGMGLE
Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +       L+G + FKLYDT G P+++ +++  
Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDANGDTLDGKIIFKLYDTFGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L   
Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+Q   +V EA +G   E++F +TPFYAE GG
Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    V  KKA      H +     L       L +D + R ++  
Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I
Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R LQ  + +   +L  +           I  V +++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   ++++K S+L  +T+D+      A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+A V ++L
Sbjct: 860 GKNPAGIADALAEVENWL 877


>gi|319644298|ref|ZP_07998792.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|317384193|gb|EFV65166.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 871

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 488/918 (53%), Gaps = 74/918 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ V
Sbjct: 1   MTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +D
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPCS
Sbjct: 121 PKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGMG
Sbjct: 179 EIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I 
Sbjct: 239 FERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKTL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++ E+E F +TL+ G+ LLD  +  +     + ++G  AF LYDT G PLD+ + I
Sbjct: 359 IEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L   G+  ++   FN  +++Q+ RAR       +      W ++KE  G T F+GYD   
Sbjct: 419 LRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R++  +   +                             ++V   TPFYAE+
Sbjct: 471 YETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAES 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG  + +   ++I D +K+           ++     ++ ++  +D + R   +
Sbjct: 503 GGQVGDTGVIVSEFETIEIIDTKKENNLPIHI---TKKLPEHLDVPMMACVDTEKRAACA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I 
Sbjct: 560 ANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDKQLREVEHLVNAKIR 619

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHV +TG
Sbjct: 620 ENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVPATG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +    +  ++   + + 
Sbjct: 674 KIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRKY 732

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E   L+       K K       L  +  +I  V  +  II  + +  +K +   L+ 
Sbjct: 733 IDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLKG 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I + + +++G     K  + ++++EDL+    NA  L R +AK++ GG GGG+PH A +
Sbjct: 792 EIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFATA 850

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + A+  V   
Sbjct: 851 GGKNPDGLNAAVDKVIEL 868


>gi|157738295|ref|YP_001490979.1| alanyl-tRNA synthetase [Arcobacter butzleri RM4018]
 gi|205829978|sp|A8EWI6|SYA_ARCB4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157700149|gb|ABV68309.1| alanyl-tRNA synthetase [Arcobacter butzleri RM4018]
          Length = 851

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/896 (38%), Positives = 507/896 (56%), Gaps = 51/896 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  +LEFF+  GHE++ S  L+P +DPTLMFTN+GMV FK+IFTG    P  +  T+ 
Sbjct: 2   DIRKEYLEFFRSKGHEVISSMPLVP-DDPTLMFTNAGMVQFKDIFTGAVPTPKNKRATSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q CVRAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +T    L   +
Sbjct: 61  QLCVRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFVTVNLALPIDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC-I 183
           L++TV++ D+EAF +W K   ++  +I+R    DNFWSM +TG CGPCSEIF+DQGE   
Sbjct: 121 LWVTVHNNDDEAFDIWSKY--INPSRIMRFGDKDNFWSMGDTGACGPCSEIFYDQGEENF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  + +   NN
Sbjct: 179 NGEEDYMGGDGDRFLEIWNLVFMQYERTADGKLNPLPKPSIDTGMGLERVIAIKEGVFNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D   FK +I+  E+++       NI ++RVI DHLR+ SF+++ GIL  NEGR YVLRR
Sbjct: 239 FDSSNFKPIIKKIEEISSKNATSENIGSYRVIADHLRACSFMLSQGILFGNEGRPYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G+ +P M  LL  L   MG  Y EL++ K  IEE L  E++RF KT+D
Sbjct: 299 ILRRAVRHGYLIGFRKPFMAKLLDTLIEIMGGHYTELVENKNFIEEQLTLEEDRFFKTID 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L      +I +G  AFKLYDT+G PLD+ +D+L  RGL  +D+  F++ + 
Sbjct: 359 LGMSLFNEELEKT--KDIFSGVTAFKLYDTYGFPLDLTEDMLRDRGLK-VDLAKFDELMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            Q++ A+A   G G  + E  +  L EK+G+ +F+GY+                      
Sbjct: 416 NQKAMAKAAWKGSGDTSNEGDFKQLLEKFGSNEFVGYNNTTY------------------ 457

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V+         V+ D+TPFYA +GGQ GD G    +   + 
Sbjct: 458 -----KSKIIALLDEHFKEVKILEKDSTGWVMLDKTPFYATSGGQNGDIGALEDNKH-IA 511

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           I +   K  G+ +    V    L+   S+   +   NR +++ +HSATHLL  AL  +LG
Sbjct: 512 IVEETTKFHGLNLSKVKVVNSSLKQGESVDAIVV--NRNEVAKHHSATHLLQSALKIVLG 569

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
             VSQ GS      LRFD T+ K +T  ++  +ED VN +IA+ +      +  E A   
Sbjct: 570 DTVSQAGSLNDASRLRFDFTYPKAMTKEQIDEVEDLVNSMIARGISGNVEELPIEQAKKK 629

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+ G KY D VRVVS E       S   CGGTHV +T +I   YIV ES + AG+RR
Sbjct: 630 GAIAMFGEKYGDVVRVVSFE-----DVSVEFCGGTHVRNTADIGSFYIVKESGVSAGVRR 684

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G  A  +      K+  + + +K S  +V+  ++++ E+ + L+      + + +
Sbjct: 685 IEAVCGTAAIKYTKDIISKMNEIQAEVKNS--DVILGIKKLKEQIKDLKKEIETSQSKTS 742

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
              +    I D   +  ++   D   LK ++D  +   +   I L+  +K+ K  ++   
Sbjct: 743 SP-IEETIINDTKVIVSVVENGD---LKKIVDDTKNANEKVAIFLL-QAKDDKVLIVAG- 796

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +++      A D  +  A ++GGGG GGRP  AQ+GG + +K  +A      + K+
Sbjct: 797 SKNT--NIKAGDWIKNIAPIVGGGG-GGRPDFAQAGGKDTSKIQEAKTKALDYAKE 849


>gi|29375946|ref|NP_815100.1| alanyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227518645|ref|ZP_03948694.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|227553175|ref|ZP_03983224.1| alanyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229550130|ref|ZP_04438855.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255972907|ref|ZP_05423493.1| alanyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255975962|ref|ZP_05426548.1| alanyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256762386|ref|ZP_05502966.1| alanyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256958870|ref|ZP_05563041.1| alanyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256965234|ref|ZP_05569405.1| alanyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257419191|ref|ZP_05596185.1| alanyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257422731|ref|ZP_05599721.1| alanyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|307271131|ref|ZP_07552414.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307273337|ref|ZP_07554582.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|307277483|ref|ZP_07558575.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|307279186|ref|ZP_07560244.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|312952383|ref|ZP_07771258.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|41018198|sp|Q835J8|SYA_ENTFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29343408|gb|AAO81170.1| alanyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227073902|gb|EEI11865.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|227177701|gb|EEI58673.1| alanyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229304716|gb|EEN70712.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255963925|gb|EET96401.1| alanyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255968834|gb|EET99456.1| alanyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256683637|gb|EEU23332.1| alanyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256949366|gb|EEU65998.1| alanyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256955730|gb|EEU72362.1| alanyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257161019|gb|EEU90979.1| alanyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257164555|gb|EEU94515.1| alanyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|306504311|gb|EFM73523.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306505748|gb|EFM74926.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306509864|gb|EFM78889.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|306512629|gb|EFM81278.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|310629767|gb|EFQ13050.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315033782|gb|EFT45714.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315036867|gb|EFT48799.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0027]
 gi|315153346|gb|EFT97362.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0031]
 gi|315155877|gb|EFT99893.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315157956|gb|EFU01973.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0312]
 gi|315170069|gb|EFU14086.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315575565|gb|EFU87756.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315579993|gb|EFU92184.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0309A]
 gi|323480614|gb|ADX80053.1| alanyl-tRNA synthetase [Enterococcus faecalis 62]
 gi|327535020|gb|AEA93854.1| alanine--tRNA ligase [Enterococcus faecalis OG1RF]
 gi|329571430|gb|EGG53117.1| alanine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 880

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W+   GLS D I  I   DNFW +   GP GP +EIF
Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F    +     LP  +IDTGMGLE
Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +     + L+G + FKLYDT G P+++ +++  
Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L   
Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+Q   +V EA +G   E++F +TPFYAE GG
Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    V  KKA      H +     L       L +D + R ++  
Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I
Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R LQ  + +   +L  +           I  V +++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   ++++K S+L  +T+D+      A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+A V ++L
Sbjct: 860 GKNPAGIADALAEVENWL 877


>gi|242310739|ref|ZP_04809894.1| alanyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
 gi|239523137|gb|EEQ63003.1| alanyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
          Length = 859

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/901 (35%), Positives = 501/901 (55%), Gaps = 58/901 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQ 59
           M     +R  FLEFF+  GH++  S  L+P +DP+L+FTN+GMV FK+IFTG+   P   
Sbjct: 8   MK--KDVRALFLEFFESKGHKVYESMPLVP-DDPSLLFTNAGMVQFKDIFTGKIPIPNPN 64

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             T+ Q C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFK+ AI  AW+ +T+   
Sbjct: 65  IATSAQLCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGAYFKKDAIAYAWEFVTEVLG 124

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             +  LY+TV++ D+EAF+LW K   +   +I R+   DNFW M +TGPCGPCSEIF DQ
Sbjct: 125 FSKEALYVTVHENDDEAFELWTK--HIDPSRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQ 182

Query: 180 GEC-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           GE    G       +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  +L+
Sbjct: 183 GEENFNGPEDYFGGDGDRFLEIWNLVFMQYERDISGNLKPLPKPSIDTGMGLERVMALLE 242

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K +N+D  LF  LI   EQ+ G KY   +  + RVI DH R+ +FL+A G+    EGRG
Sbjct: 243 GKKSNFDSSLFMPLIAKVEQIVGQKYIYESGASFRVIADHARAVAFLLAQGVNFDKEGRG 302

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +  LLG  +P +  ++ ++C  MG+ Y  L + +  I+   ++E+ERF
Sbjct: 303 YVLRRILRRAIRHGYLLGMRKPFVYEVIDSVCENMGNHYRYLREKQEAIKMQCKAEEERF 362

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            +T++ G+ L +  L +L     +++ +G+VAF+LYDT+G PLD+ QD+L   G  G+D+
Sbjct: 363 FETIENGMNLFNKELENLKKEKPNQLFSGEVAFRLYDTYGFPLDLTQDMLRENGF-GVDM 421

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            SF   +++Q+ +A+A+  G G    E  + +L  K+G  +F+GY  ++           
Sbjct: 422 DSFEVCMQKQKEQAKANWKGSGDNIKEGDFKTLISKFGENEFVGYTTMQ----------- 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + A++ +    E A    +  V+ D+TPFY ++GG +GD G  +
Sbjct: 471 ------------FKSKISALLDEN-FKEVAKLQGEGYVMLDKTPFYPQSGGPIGDKGVIL 517

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               ++    +  +         I     L     +V  +  +   +++ +HSATHLLH 
Sbjct: 518 DSNSKVLAEVMDTRKYFGLNISQIKALESLVVGQEVVAQVSQER-LEIAKHHSATHLLHK 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H++Q GS +  + LRFD +H K ++  E++ IE  VN+ I  + P +   M+
Sbjct: 577 ALREVLGEHIAQAGSLVESNRLRFDFSHPKALSYEEIEKIEILVNEKICLSNPQICETMD 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A A GA AL G KY   VRV++         S  LCGG HV +T  I   YI+ ES 
Sbjct: 637 IDSAKAKGAMALFGEKYGKNVRVITFGD------SIELCGGIHVENTANIGSFYIIKESG 690

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+ G+ A  +      ++      LK    +++  +++  E+ + L+   +
Sbjct: 691 VSSGVRRIEAVCGKAAYEYGKKALVEIAKAKEELKAQ--DLLEGIKKQKEQIKSLK---S 745

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +   +   ++L    I  V  +   + + + K L   +D  + K +   I+L+    + K
Sbjct: 746 QSTTKATTQNLQIEDINGVCVIIQSVDDAEMKTL---VDNAKNKYEKVAILLI--DTQGK 800

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  V ++      A    +  A+V+ GG GGGR   A +GG +  K  +A+      
Sbjct: 801 --IVAGV-KNAT--IKAGSWVKEVAQVM-GGNGGGRDDFATAGGKDTQKIKEALQRAREI 854

Query: 896 L 896
           +
Sbjct: 855 V 855


>gi|150004460|ref|YP_001299204.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|205829986|sp|A6L1L8|SYA_BACV8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149932884|gb|ABR39582.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
          Length = 871

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 488/918 (53%), Gaps = 74/918 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ V
Sbjct: 1   MTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +D
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPCS
Sbjct: 121 PKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGMG
Sbjct: 179 EIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I 
Sbjct: 239 FERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKTL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++ E+E F +TL+ G+ LLD  +  +     + ++G  AF LYDT G PLD+ + I
Sbjct: 359 IEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L   G+  ++   FN  +++Q+ RAR       +      W ++KE  G T F+GYD   
Sbjct: 419 LRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R++  +   +                             ++V   TPFYAE+
Sbjct: 471 YETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAES 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG  + +   ++I D +K+           ++     ++ ++  +D + R   +
Sbjct: 503 GGQVGDTGVIVSEFETIEIIDTKKENNLPIHI---TKKLPEHLDVPMMACVDTEKRAACA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I 
Sbjct: 560 ANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKIR 619

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHV +TG
Sbjct: 620 ENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVPATG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +    +  ++   + + 
Sbjct: 674 KIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRKY 732

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E   L+       K K       L  +  +I  V  +  II  + +  +K +   L+ 
Sbjct: 733 IDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLKG 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I + + +++G     K  + ++++EDL+    NA  L R +AK++ GG GGG+PH A +
Sbjct: 792 EIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFATA 850

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + A+  V   
Sbjct: 851 GGKNPDGLNAAVDKVIEL 868


>gi|315636586|ref|ZP_07891820.1| alanine--tRNA ligase [Arcobacter butzleri JV22]
 gi|315479095|gb|EFU69794.1| alanine--tRNA ligase [Arcobacter butzleri JV22]
          Length = 851

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/896 (38%), Positives = 507/896 (56%), Gaps = 51/896 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  +LEFF+  GHE++ S  L+P +DPTLMFTN+GMV FK+IFTG    P  +  T+ 
Sbjct: 2   DIRKEYLEFFRSKGHEVISSMPLVP-DDPTLMFTNAGMVQFKDIFTGAVPTPKNKRATSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q CVRAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +T    L   +
Sbjct: 61  QLCVRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFVTVNLALPIDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC-I 183
           L++TV++ D+EAF +W K   ++  +I+R    DNFWSM +TG CGPCSEIF+DQGE   
Sbjct: 121 LWVTVHNNDDEAFDIWSKY--INPSRIMRFGDKDNFWSMGDTGACGPCSEIFYDQGEENF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  + +   NN
Sbjct: 179 NGEEDYMGGDGDRFLEIWNLVFMQYERTADGKLNPLPKPSIDTGMGLERVIAIKEGVFNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D   FK +I+  E+++       NI ++RVI DHLR+ SF+++ GIL  NEGR YVLRR
Sbjct: 239 FDSSNFKPIIKKIEEISSKNATSENIGSYRVIADHLRACSFMLSQGILFGNEGRPYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G+ +P M  LL  L   MG  Y EL++ K  IEE L  E++RF KT+D
Sbjct: 299 ILRRAVRHGYLIGFRKPFMAKLLDTLIEIMGGHYTELVENKNFIEEQLTLEEDRFFKTID 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L      +I +G  AFKLYDT+G PLD+ +D+L  RGL  +D+  F++ + 
Sbjct: 359 LGMSLFNEELEKT--KDIFSGITAFKLYDTYGFPLDLTEDMLRDRGLK-VDLAKFDELMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            Q++ A+A   G G  + E  +  L EK+G+ +F+GY+                      
Sbjct: 416 NQKAMAKAAWKGSGDTSNEGDFKQLLEKFGSNEFVGYNNTTY------------------ 457

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V+         V+ D+TPFYA +GGQ GD G    +   + 
Sbjct: 458 -----KSKIIALLDEHFKEVKILEKDSTGWVMLDKTPFYATSGGQNGDIGALEDNKH-IA 511

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           I +   K  G+ +    V    L+   S+   +   NR +++ +HSATHLL  AL  +LG
Sbjct: 512 IVEETTKFHGLNLSKVKVVNSSLKQGESVDAIVV--NRNEVAKHHSATHLLQSALKIVLG 569

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
             VSQ GS      LRFD T+ K +T  ++  +ED VN +IA+ +      +  E A   
Sbjct: 570 DTVSQAGSLNDASRLRFDFTYPKAMTKEQIDEVEDLVNSMIARGISGNVEELPIEQAKKK 629

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+ G KY D VRVVS E       S   CGGTHV +T +I   YIV ES + AG+RR
Sbjct: 630 GAIAMFGEKYGDVVRVVSFE-----DVSVEFCGGTHVRNTADIGSFYIVKESGVSAGVRR 684

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G  A  +      K+  + + +K S  +V+  ++++ E+ + L+      + + +
Sbjct: 685 IEAVCGTAAIKYTKDIISKMNEIQAEVKNS--DVILGIKKLKEQIKDLKKEIETSQSKTS 742

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
              +    I D   +  ++   D   LK ++D  +   +   I L+  +K+ K  ++   
Sbjct: 743 SP-IEETIINDTKVIVSVVENGD---LKKIVDDTKNANEKVAIFLL-QAKDDKVLIVAG- 796

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +++      A D  +  A ++GGGG GGRP  AQ+GG + +K  +A      + K+
Sbjct: 797 SKNT--NIKAGDWIKNIAPIVGGGG-GGRPDFAQAGGKDTSKIQEAKTKALDYAKE 849


>gi|256618959|ref|ZP_05475805.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256598486|gb|EEU17662.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
          Length = 880

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/918 (37%), Positives = 509/918 (55%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W+   GLS D I  I   DNFW +   GP GP +EIF
Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F    +     LP  +IDTGMGLE
Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +     + L+G + FKLYDT G P+++ +++  
Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L   
Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+Q   +V EA +G   E++F +TPFYAE GG
Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    V  KKA      H +     L       L +D + R ++  
Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I
Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R LQ  + +   +L  +          ++  V +++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDIKEVNGVRYIAAQVNVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   ++++K S+L  +T+D+      A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+A V ++L
Sbjct: 860 GKNPAGIADALAEVENWL 877


>gi|260434774|ref|ZP_05788744.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260412648|gb|EEX05944.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 889

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/907 (36%), Positives = 496/907 (54%), Gaps = 53/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL F+ + GH+ + S+SLIP  DPT++ T +GM+PFK +F GQ++      T
Sbjct: 16  SGEEIREAFLNFYAERGHKRMASASLIPE-DPTVLLTIAGMLPFKPVFLGQQERPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T  + +D 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTGVYGIDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KNLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 191 L-GNEGIDLEDDDRFIEFYNLVFMQYNRDAEGILTPLANRNIDTGMGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+  + G+ Y   N     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAADLAGVDYHHLNDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P ++ +  A    +  A+P +I+ + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGIDKPFLVTMGEAAIALLKGAHPSVIERQEVILAELQREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+       ++G  AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 370 ETLERGEKLLAEVLASKPTQ--ISGAQAFELYDTYGFPLELTQEIAEEQGL-AVDLDGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+EEQR RA+A ++ +     + I   + ++  AT F GY+ L                
Sbjct: 427 AAMEEQRQRAKAAAVSIDLTLQDAIDQVVADQ-AATCFDGYEALDHD------------- 472

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+A+V  GE    A +G  V+VV D TPFY E GGQ+GD G   G   
Sbjct: 473 ----------SCVQALVVNGEPASTAKAGDAVQVVLDTTPFYGEGGGQVGDRGVLSGSD- 521

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +   +   ++  +FVH   VERG L    ++   +D   RR+   NH+ATHLL  AL  
Sbjct: 522 LIVRIESVSRSRDVFVHAGRVERGELALGDTVKAQVDRACRRRAQANHTATHLLQAALKQ 581

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD      +T+ +L+ +E  +N  I +   +  + M  + A
Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHCPTAVTADQLQQVETLINGWINEAHALQVQEMAIDQA 641

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IV+ES + AG
Sbjct: 642 KAAGAVAMFGEKYADLVRVVDVPG-----VSMELCGGTHVANTAEIGLFKIVAESGVAAG 696

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQLIH 774
           IRRIEA+ G    ++L  +D  +K L    K     +V RV  + EE +           
Sbjct: 697 IRRIEAVAGPAVLAYLNERDSVVKQLGDRFKAQPAEIVDRVAALQEELKATGRALAAAQA 756

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
                +          + D   +   +  VD   L+    +L  ++  G  +++G   + 
Sbjct: 757 ELAVAKAGALAAKAEALGDFQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGGLPDP 816

Query: 834 ---KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K  ++    + ++  +  A       AK  GGGG GGRP++AQ+GG +G     A+
Sbjct: 817 GEMGKVILVAAFGKQVIAAKLQAGKFIGGIAKQCGGGG-GGRPNLAQAGGRDGAALPAAL 875

Query: 890 AGVASFL 896
               S L
Sbjct: 876 EFARSEL 882


>gi|257082652|ref|ZP_05577013.1| alanyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|256990682|gb|EEU77984.1| alanyl-tRNA synthetase [Enterococcus faecalis E1Sol]
          Length = 880

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/918 (37%), Positives = 509/918 (55%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W+   GLS D I  I   DNFW +   GP GP +EIF
Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F    +     LP  +IDTGMGLE
Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +     + L+G + FKLYDT G P+++ +++  
Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L   
Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+Q   +V EA +G   E++F +TPFYAE GG
Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D+G        +    V  KKA      H +     L       L +D + R ++  
Sbjct: 507 QIADSGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I
Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R LQ  + +   +L  +           I  V +++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   ++++K S+L  +T+D+      A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+A V ++L
Sbjct: 860 GKNPAGIADALAEVENWL 877


>gi|253570246|ref|ZP_04847655.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251840627|gb|EES68709.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 872

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/919 (35%), Positives = 481/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRDSFKNFFETKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLEQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+       FN  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENGMTVNIEE-FNTEMQQQKQRARNA-----AAIETGDWVTLRE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDCTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+           ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKENNLPIHI---TKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDSALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY +RVRV+          S   CGG HV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFGS------SIEFCGGIHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + +  L S    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAP-DLGIAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE   L+       K K     E L  +  +I  +  +      + ++ +K++   L+
Sbjct: 733 YIEENAGLKKQVEDYMKEKEASLKERLLKNIQEIHGIKVIKFCAP-LPAEVVKNIAFQLR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 792 GEITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + AI  V   
Sbjct: 851 AGGKNTDGLNAAIEKVLEL 869


>gi|315150647|gb|EFT94663.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0012]
          Length = 880

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W+   GLS D I  I   DNFW +   GP GP +EIF
Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F    +     LP  +IDTGMGLE
Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINETFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +     + L+G + FKLYDT G P+++ +++  
Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L   
Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+Q   +V EA +G   E++F +TPFYAE GG
Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    V  KKA      H +     L       L +D + R ++  
Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I
Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R LQ  + +   +L  +           +  V +++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   ++++K S+L  +T+D+      A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+A V ++L
Sbjct: 860 GKNPAGIADALAEVENWL 877


>gi|169629935|ref|YP_001703584.1| alanyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|169241902|emb|CAM62930.1| Alanyl-tRNA synthetase [Mycobacterium abscessus]
          Length = 891

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/925 (34%), Positives = 482/925 (52%), Gaps = 65/925 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYNTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSVQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIRLAWTLLTNPVSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L+ TVY +D+EA  LW++++GL  D+I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPEKLWATVYLDDDEAIGLWQEVAGLPLDRIQRRGMADNYWSMGIPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G          + E  RYIEIWNLVFMQ E+     +        LP+ +IDTGMG+
Sbjct: 176 YDRGPEYGIEGGPEANED-RYIEIWNLVFMQNERGEGTSKTDFEILGPLPRQNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ DL + +I     V    Y      + V +RVI DH R+++ +I 
Sbjct: 235 ERIACLLQGVDNVYETDLVRPVIDCVAAVAPRGYGQGNHEDDVRYRVIGDHARTAAIIIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGYVLRR++RR +   +LLG  +P+M  L+  +  EMG +YPEL+     I
Sbjct: 295 DGVSPGNEGRGYVLRRLLRRIIRSTKLLGVEKPMMGELMAVVRDEMGPSYPELVTDFERI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+  F +TL  G  L +             L+G  AF L+DT+G P+++  ++ 
Sbjct: 355 SRIAVAEETAFNRTLASGSKLFEDAADKTKTAGKSTLSGSDAFTLHDTYGFPIELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL+ +D   F + + EQR RA+A +        +   +      G T+F G+D L  
Sbjct: 415 AEAGLS-VDEKGFRELMNEQRQRAKADAAARKHAHADLSAYRELVDAGPTEFTGFDELDS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +                       + +  I   G  V  A +G + E+V D+TP YAE+G
Sbjct: 474 A-----------------------ARILGIFVDGARVPVASAGSEAEIVLDRTPLYAESG 510

Query: 526 GQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           GQ+ D G   GDG     + +++DVQK A+ +FVH   VE G       +V ++D   R 
Sbjct: 511 GQIADVGSIRGDGANATSQAKVSDVQKIAKTLFVHKVTVESGEFVEGDQVVASVDPHWRH 570

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
             +  HS TH++H AL  +LG +  Q GS   P  LRFD +    ++ A+ + +ED  N 
Sbjct: 571 GATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFSWQGALSEAQRQEVEDVANK 630

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  N PV T + + + A + GA AL G  Y DRVRVV +    GG  S  LCGGTHV+ 
Sbjct: 631 AVEANYPVNTFVTDLDQAKSMGAMALFGENYGDRVRVVDI----GGPFSLELCGGTHVAH 686

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           + +I  + ++ ESS+ +G+RR+EA  G  A  +L  +   + +L+S LKV    V GRV 
Sbjct: 687 SSQIGPVTLLGESSVGSGVRRVEAYVGLDAVRYLSKERALMAALSSSLKVPSEEVPGRVA 746

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELKSVMDA 815
            + E  +  +    + +L      ++       +I  V  ++H +     + +L+S++  
Sbjct: 747 TLVERLKVAEKELEQTRLASVKASIATLVDNAERIGSVTVVAHRLPDGTGAGDLRSLVGD 806

Query: 816 LQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           ++ ++ S   ++ L+    E     ++ V +   D    A DL       +  G GGG+ 
Sbjct: 807 IRGRLGSDPAVVALIAA-GEGSVPFVVSVNQAAQDAGLRANDLVGAIGPAV-DGRGGGKA 864

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
             AQ  G +    D A+  + + ++
Sbjct: 865 DTAQGSGKDPAGIDAALQALRAQIR 889


>gi|257085361|ref|ZP_05579722.1| alanyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257086856|ref|ZP_05581217.1| alanyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|257089773|ref|ZP_05584134.1| alanyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|257415989|ref|ZP_05592983.1| alanyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|307288125|ref|ZP_07568135.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|312900645|ref|ZP_07759942.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|312904123|ref|ZP_07763291.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|256993391|gb|EEU80693.1| alanyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256994886|gb|EEU82188.1| alanyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256998585|gb|EEU85105.1| alanyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|257157817|gb|EEU87777.1| alanyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|306500861|gb|EFM70179.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|310632599|gb|EFQ15882.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|311292126|gb|EFQ70682.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315027379|gb|EFT39311.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2137]
 gi|315147876|gb|EFT91892.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315164259|gb|EFU08276.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315166647|gb|EFU10664.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|315578468|gb|EFU90659.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 880

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W+   GLS D I  I   DNFW +   GP GP +EIF
Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F    +     LP  +IDTGMGLE
Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +     + L+G + FKLYDT G P+++ +++  
Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L   
Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+Q   +V EA +G   E++F +TPFYAE GG
Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    V  KKA      H +     L       L +D + R ++  
Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I
Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R LQ  + +   +L  +           +  V +++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   ++++K S+L  +T+D+      A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+A V ++L
Sbjct: 860 GKNPAGIADALAEVENWL 877


>gi|170758241|ref|YP_001787882.1| alanyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|205830034|sp|B1KXB7|SYA_CLOBM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169405230|gb|ACA53641.1| alanine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 879

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/908 (36%), Positives = 514/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI F++  
Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFNRGA 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +     ++L+GD AFKLYDT+G P+++ ++IL   G   ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKVLSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E   E   G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNEIEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++   R  +  NH+ATH+LH 
Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEGRRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  +VSE+ 
Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKVVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGG GGRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVASIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|297812419|ref|XP_002874093.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319930|gb|EFH50352.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 978

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/928 (33%), Positives = 482/928 (51%), Gaps = 71/928 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  SIR  FLEFF   GH++LPS+SL+P  DPT++ T +GM+ FK IF G+        T
Sbjct: 79  SGDSIRRRFLEFFASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPREVPCAT 137

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+C+R     NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L  
Sbjct: 138 TAQRCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIRWAWELSTIEFGLPA 193

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+++++Y++D+EAF++WK   G+  ++I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 194 NRVWVSIYEDDDEAFEIWKNEVGVPVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPE 253

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                     +  R+IE +NLVFMQ+ +        L + +IDTG+GLER+A +LQ+  N
Sbjct: 254 RGSDDDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPN 313

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I    ++  + Y+  N     + +VI DH+R+  +LI+DG+ P+N GRGY
Sbjct: 314 NYETDLIYPIIAKISELANISYDSANEKAKTSLKVIADHIRAVVYLISDGVSPSNIGRGY 373

Query: 300 VLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RRA+   + LG  E          +  +   +         ++      I E +
Sbjct: 374 VVRRLIRRAVRKGKSLGINEYRNGNLKGAFLPAVAEKVIELSTYIDSDVKLKAPRIIEEI 433

Query: 352 RSEDERFGKTLDRGLVLLDGVL-------SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           R E+  F KTL+RG  LLD  L               L+G  AF LYDT+G P++I  ++
Sbjct: 434 RQEELHFKKTLERGEKLLDQKLNDALSIADKTKNTPYLDGKDAFLLYDTYGFPVEITAEV 493

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG   ID+  F   +E QR +++A    +     +     + +    T+F+GYD L 
Sbjct: 494 AEERG-VSIDMKGFEVEMENQRRQSQAAHNVVKLTVEDDA--DITKNIADTEFLGYDSL- 549

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    ++VK+++  G+ V +   G KVE++ D+TPFYAE+
Sbjct: 550 ----------------------SARAVVKSLLVDGKPVIKVSEGSKVEILLDRTPFYAES 587

Query: 525 GGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           GGQ+ D G             +      +K+  IFVH   V+ G L     +   +D   
Sbjct: 588 GGQIADHGFLYVNSDGNQENAVVEVSDVQKSLKIFVHKGTVKSGALEVGKEVEAAVDADL 647

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R++  ++H+ATHLL  AL  ++G   SQ GS +  D LRFD   ++ +   ELK IE  +
Sbjct: 648 RQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNINRSLHDNELKEIERLI 707

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I     + T+++   DA  +GA A+ G KY+ + VRVV V        S  LCGGTH
Sbjct: 708 NRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVPG-----VSMELCGGTH 762

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++  L S LKV    V+ 
Sbjct: 763 VGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEKVIE 822

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD--------VNFMSHIISEVDSKELK 810
            VE + +E R  +   +  + +  V   S              +  +   + + D+  LK
Sbjct: 823 TVENLLKELRAAKKEASDLRSKAAVYKASVISKNAFTVGTSQTIRVLVDSMDDTDADSLK 882

Query: 811 SVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868
           S  + L   ++  + +++G S E  K S++   +  ++     A       AK+ GGGG 
Sbjct: 883 SAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGPIAKLCGGGG- 941

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG+P+ AQ+GG        A+      L
Sbjct: 942 GGKPNFAQAGGRKPENLPSALEKAREDL 969


>gi|256853016|ref|ZP_05558386.1| alanyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|307291365|ref|ZP_07571249.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|256711475|gb|EEU26513.1| alanyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|306497596|gb|EFM67129.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|315030000|gb|EFT41932.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4000]
          Length = 880

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W+   GLS D I  I   DNFW +   GP GP +EIF
Sbjct: 117 WLAFDPEKLYVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F    +     LP  +IDTGMGLE
Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +     + L+G + FKLYDT G P+++ +++  
Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L   
Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+Q   +V EA +G   E++F +TPFYAE GG
Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    V  KKA      H +     L       L +D + R ++  
Sbjct: 507 QIADRGYVKNTAGDVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I
Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R LQ  + +   +L  +           +  V +++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   ++++K S+L  +T+D+      A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+A V ++L
Sbjct: 860 GKNPAGIADALAEVENWL 877


>gi|296117815|ref|ZP_06836398.1| alanine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969046|gb|EFG82288.1| alanine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 902

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/923 (35%), Positives = 490/923 (53%), Gaps = 63/923 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61
              IR  F + F  +GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P Y     
Sbjct: 14  THEIRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPYPNGLA 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT      
Sbjct: 73  TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWALLTNSVDDG 128

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F L+  RL++TVY +D+EA  +W    G+  ++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 129 GFGLEPDRLWVTVYLDDDEAADIWHDKVGVPKERIQRMGMEDNYWSMGVPGPCGPCSEIY 188

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGMGL 230
           +D+G    G   G   +  RY+EIWNLVFMQ  +     K    I   LPK +IDTGMG+
Sbjct: 189 YDRGPEY-GVEGGPEADDNRYMEIWNLVFMQNIRGEGDGKGNFEILGELPKKNIDTGMGV 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-----NIVNHRVIVDHLRSSSFL 285
           ER+A +LQ   N Y+ DL   +I  +E+VTG  YE       N V  RVI DH R++  L
Sbjct: 248 ERVACILQNVDNVYETDLLAPVIAEAEKVTGASYEDPKAERINDVRFRVIADHSRTAMML 307

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG+ P+NEGRGY+LRR++RR +  ARLLG    ++   +  +   M  +YPE+ Q + 
Sbjct: 308 ILDGVTPSNEGRGYILRRLVRRIIRSARLLGAQAEVLERFMNTIMDTMELSYPEIAQNRE 367

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
            I     +E++ F KTL+ G    D     +      ++ GD AF+L+DT+G P+D+  +
Sbjct: 368 RILRVALNEEKSFLKTLESGTHRFDEVAAAAKSQGKTVVKGDEAFELHDTYGFPIDLTLE 427

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D+ SF+ A+ +QR RA+A +     G  ++  +        T F GY+ L
Sbjct: 428 MAAEAGL-DVDMDSFDAAMAQQRERAKADNRAKKHGHADETLYREWVDNQPTIFTGYEEL 486

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                     + V  +V+ GE V  A  G+++EV+ D +P YAE
Sbjct: 487 ASD-----------------------AKVIGLVRDGEKVTSAGEGEQIEVILDHSPLYAE 523

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ D G     G  L + DVQK  + ++VH A V  G L    ++   +D Q R   
Sbjct: 524 SGGQMADRGRIFTGGTVLDVNDVQKIGKKLWVHKATVASGGLDLGSAVTAEVDQQWRHGA 583

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ATHL+H AL  +LG    Q GS   P  LRFD  +++ +++ +L  I    N  +
Sbjct: 584 TQAHTATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSADQLDEIALIANQAV 643

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +L V T   + E+A A GA AL G  Y + VRVV +    GG  S  LCGGTHV+ + 
Sbjct: 644 DSDLAVNTIETSLEEAKAMGAMALFGENYGNNVRVVEI----GGPFSIELCGGTHVAHSS 699

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + ++ ESS+ +G RRIEA +G  A  +   +   + +++  LKV   ++ GR+  +
Sbjct: 700 QIGPVSVLGESSVGSGARRIEAYSGMDAFKYYSKEAALVDAVSKDLKVPSDDLPGRIAAL 759

Query: 764 WEEYRKLQLIHAK-----RKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQ 817
            ++ ++ +   AK      + +          I     ++  +   V + +L+++   L+
Sbjct: 760 TDKLKQAEKEIAKLHQAQLQAKSAEFVAQAQDINGFKVLTLDLPQGVAAGDLRTLATDLR 819

Query: 818 KKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++Q+   II+L   S +K   +       +     + D+ +L  + +  G GGG+P MA
Sbjct: 820 NRMQNEDAIIVLAAASGDKLPFIAAATKSAVARGVKSGDIVKLFGEYV-DGRGGGKPDMA 878

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q  G N    +Q  A V  F  K
Sbjct: 879 QGAGNNPGGVEQGFAAVRDFADK 901


>gi|148380519|ref|YP_001255060.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932600|ref|YP_001384806.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153937856|ref|YP_001388276.1| alanyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|205830027|sp|A7FWJ5|SYA_CLOB1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830031|sp|A5I4Z5|SYA_CLOBH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148290003|emb|CAL84122.1| putative alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC
           3502]
 gi|152928644|gb|ABS34144.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152933770|gb|ABS39269.1| alanine--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 879

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/908 (36%), Positives = 515/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+  
Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDMDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +     +IL+GD AFKLYDT+G P+++ ++IL   G   ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E   E   G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  IVSE+ 
Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGIFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGG GGRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|257126597|ref|YP_003164711.1| alanyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
 gi|257050536|gb|ACV39720.1| alanyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
          Length = 871

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/912 (35%), Positives = 514/912 (56%), Gaps = 58/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F++FF+   H+   S+SLIP +D +L+ T +GMVPFK  F G+++  ++ +
Sbjct: 1   MTGNEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK   L+
Sbjct: 60  TTYQKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLE 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178
           + RL+++VY  D+EA+++W K  G+ A++I+R+   DN+W+    G CGPCSEI++D   
Sbjct: 116 EDRLWVSVYKTDDEAYEIWNKEIGVPAERIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQN 175

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G+          ++G+R++EIWNLVF ++ +        LP+ +IDTG GLER+A+V+Q
Sbjct: 176 MGKNNEEADRKPGDDGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIASVVQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K NN+D DLF ++ +  + V  ++    N    ++I DH+R+S FLI DG+LP+NEGRG
Sbjct: 236 NKDNNFDTDLFTNITKGIKSVLEIQ-GNENEEAIKIIADHVRASVFLIGDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           Y+LR+I+RRA         ++    +  +  L+P +   M  AYPEL + +  IE+ +R 
Sbjct: 295 YILRKIIRRAFGAGSAAKQKVFEKEDIFLYKLVPYVLETMNEAYPELAEKQEYIEKVIRL 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF  TL  G  +L+  +  L     + L  ++ FKLYDT G P ++ + IL  +G  
Sbjct: 355 EEERFATTLKNGTEMLEEEIQKLKGENQKELPAELTFKLYDTFGFPFELTKLILENQGFE 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             +   F + L EQ  R++     +     ++      EK+G T+F GY          +
Sbjct: 415 ASEEE-FEKKLAEQVQRSKDSRTTISDMIKDEFIDEFFEKHGKTEFTGY---------LQ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           + +   +   I  + G+S                      E++FD+TPFYAE+GGQ+ DT
Sbjct: 465 NYEEKSKLLHIAKSEGISG--------------------YEMIFDKTPFYAESGGQVADT 504

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++ +V KK +       I+        + + + ID   R+ +  NH+ATH
Sbjct: 505 GIITSGEFEGKVVNVVKKHDVFIHQVEIIRGIAPAVGVEVKMQIDVNRRKDIQRNHTATH 564

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH  L   LG+HV Q+GS +  + LRFD +H + I+   ++ IE  VNDII  NL V  
Sbjct: 565 ILHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAISPEMIEKIEKGVNDIILSNLQVKI 624

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              N EDA A GA AL   KY D VRVV ++      +S  LCGGTHV STGEI L  I 
Sbjct: 625 NYENIEDAKARGAMALFSDKYGDIVRVVEIDG-----YSIELCGGTHVKSTGEIGLFNIE 679

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+ I +G RRI A TG ++ +++   +EK+K ++   +  + NVV  +E+   + R   
Sbjct: 680 SENGIASGTRRITATTGHKSLNYVNRLEEKIKEISDIFRTDEKNVVDIIEKYIGDMRAAV 739

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +H + + +L   ++     +   +  V  +     + +  ELK ++D  ++K+QSGI++
Sbjct: 740 KVHEEMQTKLVKYEINEMLENVETVNGVKVLKRSFVDKNVDELKEIVDRGKEKMQSGIVI 799

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G +   KA  ++ VT+DL+ +  A ++ +  A  + GG GGGRP  AQ+GG NG+   
Sbjct: 800 L-GTNNNGKAVFVVGVTKDLISKVKAGEIVK-VAAQVAGGNGGGRPDFAQAGGKNGSAVK 857

Query: 887 QAIAGVASFLKK 898
           +A+     F+ +
Sbjct: 858 EAVEKAFEFVTE 869


>gi|10177227|dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 954

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/928 (34%), Positives = 482/928 (51%), Gaps = 71/928 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  SIR  FLEFF   GH++LPSSSL+P  DPT++ T +GM+ FK IF G+        T
Sbjct: 55  SGDSIRRRFLEFFASRGHKVLPSSSLVPE-DPTVLLTIAGMLQFKPIFLGKVPREVPCAT 113

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+C+R     NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L  
Sbjct: 114 TAQRCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEFGLPA 169

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+++++Y++D+EAF++WK   G+S ++I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 170 NRVWVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPE 229

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                     +  R+IE +NLVFMQ+ +        L + +IDTG+GLER+A +LQ+  N
Sbjct: 230 RGYDEDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPN 289

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I    ++  + Y+  N     + +VI DH+R+  +LI+DG+ P+N GRGY
Sbjct: 290 NYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMRAVVYLISDGVSPSNIGRGY 349

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMH--------LLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RRA+   + LG    +  +        +   +         ++      I E +
Sbjct: 350 VVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIELSTYIDSDVKLKASRIIEEI 409

Query: 352 RSEDERFGKTLDRGLVLLDGVL-------SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           R E+  F KTL+RG  LLD  L               L+G  AF LYDT G P++I  ++
Sbjct: 410 RQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGKDAFLLYDTFGFPVEITAEV 469

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG   ID+  F   +E QR +++A    +     +     + +    T+F+GYD L 
Sbjct: 470 AEERG-VSIDMNGFEVEMENQRRQSQAAHNVVKLTVEDDA--DMTKNIADTEFLGYDSL- 525

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    ++VK+++  G+ V     G +VEV+ D+TPFYAE+
Sbjct: 526 ----------------------SARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTPFYAES 563

Query: 525 GGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           GGQ+ D G             +      +K+  IFVH   V+ G L     +   +D   
Sbjct: 564 GGQIADHGFLYVSSDGNQEKAVVEVSDVQKSLKIFVHKGTVKSGALEVGKEVEAAVDADL 623

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R++  ++H+ATHLL  AL  ++G   SQ GS +  D LRFD   ++ +   EL+ IE  +
Sbjct: 624 RQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELEEIECLI 683

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I     + T+++   DA  +GA A+ G KY+ + VRVV V        S  LCGGTH
Sbjct: 684 NRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVPG-----VSMELCGGTH 738

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++  L S LKV   +V  
Sbjct: 739 VGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEDVTN 798

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD--------VNFMSHIISEVDSKELK 810
           RVE + EE R  +   +  + +  V   S              +  +   + + D+  LK
Sbjct: 799 RVENLLEELRAARKEASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDTDADSLK 858

Query: 811 SVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868
           S  + L   ++  + +++G S E  K S++   +  ++     A       AK+ GGGG 
Sbjct: 859 SAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGPIAKLCGGGG- 917

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG+P+ AQ+GG        A+      L
Sbjct: 918 GGKPNFAQAGGRKPENLPSALEKAREDL 945


>gi|257063513|ref|YP_003143185.1| alanyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476]
 gi|256791166|gb|ACV21836.1| alanyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476]
          Length = 889

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/929 (34%), Positives = 488/929 (52%), Gaps = 79/929 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQ 59
              + IR  +L+FF+    + LPSSSLIP +DP+L+ T++GMV FK  F   +   P Y 
Sbjct: 4   MTTAEIREKYLKFFEGKACKRLPSSSLIP-DDPSLLLTSAGMVQFKPYFLHVKEFDPAYV 62

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
              TVQKCVR     ND+D +G T RH +FFEMLGNFSFG YFK+     AW+    E +
Sbjct: 63  GAATVQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGKYFKKEMCAWAWEFCLNELE 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + +LY TV+++D+E  ++WK + G+    I R+  +DNFW    TGPCGPCSEI++DQ
Sbjct: 119 LPKEKLYFTVFEDDDETIEIWKSL-GVEDSHISRLGEDDNFWRAGPTGPCGPCSEIYYDQ 177

Query: 180 GECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G     G P      + +R++E WN VF Q++ Q       LP  +IDTGMGLERMA ++
Sbjct: 178 GPEFGCGDPNCAPGCDCDRFLEFWNCVFTQYDGQEDGTLAPLPTKNIDTGMGLERMAAIM 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY------------EGNNIVNHRVIVDHLRSSSFL 285
           Q   +N+D D+ + LI   E+++G  Y            +G+  ++ R+  DH RS +F+
Sbjct: 238 QGVQSNFDTDVIRGLIAVGERLSGKSYVGKANTVGHGSEQGDIDLSLRICADHSRSVAFM 297

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           IADGILP+NEGRGYVLRR++RRA+ + R LG     +   +  +   MG  YPE+++ + 
Sbjct: 298 IADGILPSNEGRGYVLRRLLRRAVMHGRKLGIEGAFLNEYVAVIVDLMGHVYPEIVENRA 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           L+E  + SE+  F  TL +G   L   L +L     L+GDVAFKL+DT+G P+++ ++I 
Sbjct: 358 LVESVIASEEGAFANTLRQGQAYLAEALKNLE-GTTLSGDVAFKLHDTYGFPVEVTEEIC 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDL 462
              G   +D   F + + EQR RARA +             I+  L ++ G T+F+GY+ 
Sbjct: 417 SESG-ISVDHARFEECMNEQRERARAATKDDAEAAWSTYGSIYADLLKELGPTKFVGYEG 475

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + +KAI++ GE+V     G++ E+V D TPFYA
Sbjct: 476 TDYEG----------------------ATIKAIIRNGELVGSLHRGEEGEIVLDTTPFYA 513

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRR 581
           E GG++GDTG   G     ++ D +   +G+  H   V  G     + ++  ++D Q R 
Sbjct: 514 EMGGEVGDTGMLHGTFGVSEVLDTKAPEKGLVCHRVRVIEGDCHAVDETVNASVDAQRRA 573

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++ NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH + +T  ++  +E   N+
Sbjct: 574 LITRNHTATHLLHAALREVLGDHVKQKGSYVGPDRLRFDFTHFEGMTPEQIAEVERVANE 633

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            + Q +P      +   A  +G  AL G KY D VRVV     + G  S  LCGG HVS+
Sbjct: 634 KVMQAIPTTIYETSLNAAREAGVTALFGEKYGDTVRVV-----EAGEFSRELCGGCHVSN 688

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI  + IVSE S  A +RRIEA+T   A +++   + +LK  A+ L+V   +V  R  
Sbjct: 689 TAEIGFIKIVSEGSSAANVRRIEALTSVEALNYMNAVEAELKETAAELRVPMFDVSERTA 748

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSVMDAL 816
                 +  +      K      ++    + DV       +   I  +D+  L++  D +
Sbjct: 749 SNLATIKDYETKAKNAKKMAAEGNI-AEHVKDVVNVGYPLLVVRIDGLDTGGLRNAWDII 807

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGR---- 871
           + ++++    ++G     K  ++   T++ +   FNA  + +  A         G     
Sbjct: 808 RARMETPGACIIGTVNNDKPIIMAAGTDEAVAAGFNAGAVIKNIA---------GNIKGG 858

Query: 872 ----PHMAQSGGPNGNKADQAIAGVASFL 896
               P MAQ+GG + +  D A+      L
Sbjct: 859 GGGKPSMAQAGGKDASGLDAALQAARDML 887


>gi|113953976|ref|YP_731956.1| alanyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|122945499|sp|Q0I6G6|SYA_SYNS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|113881327|gb|ABI46285.1| alanyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 893

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/913 (36%), Positives = 501/913 (54%), Gaps = 55/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL F+++ GH+++ S+SLIP  DPT++ T +GM+PFK +F GQ+K      T
Sbjct: 16  SGAEIRAAFLSFYEERGHKVMASASLIPE-DPTVLLTIAGMLPFKPVFLGQQKRPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T  F +D 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTDLFGIDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFNPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ+  N
Sbjct: 191 L-GDEGIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGLGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+  + G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAADLAGVDYHQLDDAGQTSLKVIGDHSRAVTQLICDGVSASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P ++ +  A    +  AYP +I+ + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGIHQPFLVTMGQASIALLKDAYPSVIERQEVILAELQREESRFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL    K   ++G  AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 370 ETLERGEKLLADVLESKPKQ--ISGAQAFELYDTYGFPLELTQEIAEEHGL-DVDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+E+QR RA+A ++ +     + I   +     AT F GYDLL  S             
Sbjct: 427 QAMEQQRQRAKAAAVSIDLTLQDAID-QVAADLNATSFEGYDLLVQS------------- 472

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537
                    SS V+A++  GE    A  G  V+VV D TPFY E GGQ+GD G  +GD  
Sbjct: 473 ---------SSTVQALLVNGEAAASASDGDVVQVVLDNTPFYGEGGGQVGDRGLLVGDGP 523

Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                + + +   +  G+FVH   V+ G L     +   +D   RR+   NH+ATHLL  
Sbjct: 524 DGNGLIVVIEGVSRNRGVFVHSGRVQLGRLGVGDVVHGQVDRACRRRAQANHTATHLLQA 583

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++   + Q GS +  + LRFD    + +   EL+ IE  +N  I+    +    M 
Sbjct: 584 ALKQVVDEGIGQAGSLVNFERLRFDFHCPRAVKPEELEQIETLINGWISDAQSLEVNEMA 643

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A A+GA A+ G KY D V        D    S  LCGGTHV +T EI L  IVSES 
Sbjct: 644 IDQAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVGNTAEIGLFKIVSESG 698

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G    ++L  ++  +K L    K   G +V RV  + EE +  Q    
Sbjct: 699 VAAGIRRIEAVAGASVLAYLNEREVVVKQLGDRFKAQPGEIVERVVALQEELKNSQKALT 758

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L V       +    +     +   +  V+   L+     L  ++     +++G 
Sbjct: 759 AARSELAVAKSAALAVQAVAVGKHQLLVARLDGVNGDGLQGAALGLLDQLGDATAVVLGG 818

Query: 831 ----SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               S + K  ++    + ++     A       AK+ GGGG GGRP++AQ+GG +G   
Sbjct: 819 LPDPSDQGKVILVAAFGKAVIATGQQAGKFIGAIAKLCGGGG-GGRPNLAQAGGRDGAAL 877

Query: 886 DQAIAGVASFLKK 898
           D A+    + LKK
Sbjct: 878 DAALNTARAELKK 890


>gi|262038170|ref|ZP_06011567.1| alanine--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261747818|gb|EEY35260.1| alanine--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 870

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/910 (34%), Positives = 514/910 (56%), Gaps = 60/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R +F++FF+   H+   S+SLIP +D +L+ T +GMVPFK  F G+++  ++ +
Sbjct: 1   MTGNELRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK   LD
Sbjct: 60  TTYQKCIRT----NDLENVGKTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLD 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178
           + RL+++V++ D+EA+K+W +  G+ A++++R+  +DN+W+    G CGPCSEI++D   
Sbjct: 116 KERLWVSVFETDDEAYKIWNEEIGVPAERMVRLGEDDNWWAAGPVGSCGPCSEIYYDTQN 175

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G+          +EG+R++EIWNLVF ++ +        LP+ +IDTG G+ER+A+V+Q
Sbjct: 176 MGKNNEEINCKPGDEGDRFLEIWNLVFTEWNRLEDGTLVPLPEKNIDTGAGIERIASVIQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K +N++ DLF  +I+  E+V  +K +  +    +VI DH+R+S FLI DG+LP+NEGRG
Sbjct: 236 NKKSNFETDLFMPIIKGIEKVLDIK-KEEHDEAVKVIADHIRASVFLIGDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           Y+LR+I+RRA         ++    +  +  L+  +   M   YP+L++    IE+ ++ 
Sbjct: 295 YILRKIIRRAFGVGSVAKEKVFEKEDIFLHKLVSYVVETMKDGYPDLVEKSEYIEKVIKI 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEIL--NGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF  TL  G  +L   ++ L K      + +++FKLYDT G P ++ + IL   G  
Sbjct: 355 EEERFSTTLKNGTEMLSEEIAKLKKQNKKKLSSEISFKLYDTFGFPFELTKLILNNEG-I 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +    F + LEEQ +R++   + +     +       EK+G T+F GY+       +  
Sbjct: 414 EVSEEDFEKRLEEQITRSQRSRVTISDMIKDDFIDEFFEKHGKTEFTGYENFADKGKILY 473

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
             K                                     E++FD+TPFYAE+GGQ+ DT
Sbjct: 474 AAKSEGMSG------------------------------YEMIFDKTPFYAESGGQVSDT 503

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++ DV KK +       +++  I     ++ L ID + R+ +  NH+ATH
Sbjct: 504 GKITAGEFEGRVVDVVKKRDVFIHQVEVIKGIIPAENTTVELEIDVERRKDIQRNHTATH 563

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH  L   LG+HV Q+GS +  D LRFD +H +PI+   ++ IE  VN++I  N+    
Sbjct: 564 ILHKVLREKLGTHVEQSGSLVESDRLRFDFSHYEPISKEMIEEIEYEVNNVILSNIKTKI 623

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              N ++A   GA AL   KY D VRVV +        S  LCGG HV STGEI    I 
Sbjct: 624 DYENIQEAKNRGAMALFSDKYGDIVRVVEIPGF-----SIELCGGAHVKSTGEIGFFNIE 678

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+ I +G+RRI A TG ++  ++ G +EKL  +++ +K  + N+V  +++   E++ L+
Sbjct: 679 SETGISSGVRRIIATTGHKSLEYVNGIEEKLAEISATMKSDENNIVEVLKKYKNEFKDLE 738

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             + + + +L   +++       +I+ V  ++      +  ELK ++D  ++K+QSGII+
Sbjct: 739 KAYMQLQSRLLKYEINEIFEGVEEISGVKVLAKTFENKNIDELKEIVDRGKEKLQSGIII 798

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L      +KA  +  VT+DL+ +  A D+ +++A+    G GGGRP  AQ+GG NG+   
Sbjct: 799 LGS--NNEKAIFVAGVTKDLISKIKAGDIVKVAAQT-ADGNGGGRPDFAQAGGKNGSAVK 855

Query: 887 QAIAGVASFL 896
           +A+     ++
Sbjct: 856 EAVEKSKEYI 865


>gi|300858567|ref|YP_003783550.1| alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686021|gb|ADK28943.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206280|gb|ADL10622.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231]
 gi|302330837|gb|ADL21031.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002]
          Length = 890

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/924 (34%), Positives = 486/924 (52%), Gaps = 63/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F   F K GH+ +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRERFTNHFVKAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWALLTDSVA 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY +D+EA  +W K  G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGFGLDPERLWVTVYLDDDEAADIWNKKIGIPTERIQRLGMADNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228
           I++D+G    G   G   +  RY+EIWNLVFMQ E+       N +    LPK +IDTG+
Sbjct: 176 IYYDRGAAY-GKEGGPIADDNRYMEIWNLVFMQNERGEGIGKDNFEILGPLPKKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSF 284
           G+ER+A +LQ   N Y+ DL + +I  +E++TG  Y       +++  RVI DH R+   
Sbjct: 235 GVERVACILQGVDNVYETDLLRPVIDVAEKLTGASYGEGAPHQDLIRFRVIADHSRTGMM 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NEGRGY+LRR++RR +  A LLG     +   +  +   M  +YPE+ + +
Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSAHLLGAKGNTLEQFMNTIMDTMTPSYPEIAENR 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQ 402
             I +   +E++ F KTL  G  L +     +  +  ++L+G  AFKL+DT+G P+D+  
Sbjct: 355 ERILKVALTEEKAFLKTLASGTQLFEEKADEVKTEGKKLLDGASAFKLHDTYGFPIDLTL 414

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           ++    GL  +D   F+  + EQR+RA+A +     G  +   +        T+F GY  
Sbjct: 415 EMAAEAGLE-VDTAGFDSLMAEQRARAKADNRAKKHGHVDLSIYREWVDEHPTEFTGYSE 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                          S V  ++  G  V E  +G +VE++ + +P YA
Sbjct: 474 L-----------------------STESKVLGMIAGGAKVNEVTAGDEVEIILEASPLYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAGGQ GD G  I     + + DVQK  + ++VH A V +G L    ++   +D Q R  
Sbjct: 511 EAGGQTGDRGTIIMGDTIVNVNDVQKIGKKLWVHKATVTQGGLSIGDTVSANVDKQWRHS 570

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               HSATHL+H AL  +LG    Q GS   P  LRFD  +++ +T+ +L  I+   N  
Sbjct: 571 ARQAHSATHLIHAALRDVLGPTAVQAGSLNRPGYLRFDFNYTEALTADQLAQIQLITNQA 630

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  +  V T   + ++A A GA AL G  Y   VRVV +    GG  S  LCGGTHV  +
Sbjct: 631 VDVDWTVNTIETSLDEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVEHS 686

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            +I  + I+ ESS+ +G+RRIEA +G  +  +L  +   ++ +A+ +K    ++  R+  
Sbjct: 687 SQIGPVSILGESSVGSGVRRIEAYSGLDSFQYLAKEKALVEGIAASMKSKTDDIPERIAS 746

Query: 763 IWEEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDAL 816
           + ++ ++ +        A+ + Q         ++  V+ ++H +   V S +++++   L
Sbjct: 747 LTQKLKEAEKAVADLRAAQLRNQAAKLLTDADEVNGVSVVAHRLTENVSSNDVRALALDL 806

Query: 817 QKKIQS--GIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           + ++     +I L+      K   ++  T+  +     A DLA++    +  G GGG+P 
Sbjct: 807 KSRLGDKPAVIALIAEDGTGKTPFVVAATKAGVAQGVKANDLAKVLGSYI-QGNGGGKPD 865

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ    +    D  +A +   ++
Sbjct: 866 MAQGSARDIAGFDSGVAAIKDEIR 889


>gi|258653460|ref|YP_003202616.1| alanyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258556685|gb|ACV79627.1| alanyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 891

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 487/915 (53%), Gaps = 61/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F++ GH ++PS+SLI   D T++FT +GM PFK  F GQ  P +   
Sbjct: 1   MQTHEIRRRFLDHFERAGHTVVPSASLISQ-DATVLFTIAGMAPFKPYFLGQSTPPFPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D+DNVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSVQKCVRTG----DIDNVGVTTRHNTFFQMAGNFSFGDYFKAGAIEHAWTLLTSSLADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++TVY+ D+EA +LW++I+GL A++I R    DNFWSM   GPCGPCSEI+
Sbjct: 116 GYGLDPDRLWVTVYESDDEAERLWQEIAGLPAERIQRRGMADNFWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERF-------ILPKMSIDTGM 228
           +D+G    G   G   + +RY+E+WNLVFMQ  + ++             LP+ +IDTG+
Sbjct: 176 YDRGPEY-GIEGGPVADEDRYLEVWNLVFMQDMRGESDGSGKGDFPILGPLPQQNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFL 285
           G+ER+A +LQ   N Y+ DL + +I + EQ++G KY G +       RVI DH RS   L
Sbjct: 235 GVERLAFLLQGVDNVYETDLLRPIIASMEQLSGKKYGGGDHQADVRFRVIADHSRSGMML 294

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG+ P NEGRGYVLRR++RRA+  ARLLG TEP+M  L+  +   M  +YPEL     
Sbjct: 295 IGDGVTPGNEGRGYVLRRLLRRAVRSARLLGVTEPVMPTLMSIVRDLMSPSYPELATDYE 354

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQD 403
            IE+   +E++ F +T+  G  L D   + L    +  L G  AF L+DT G P+D+  +
Sbjct: 355 RIEKVAATEEKAFLRTIASGSKLFDVAAADLATQHVTTLPGATAFTLHDTQGFPIDLTLE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D+  F + ++EQ+ RARA +     G  +   +      GAT+F GY  L
Sbjct: 415 MAAEAGLT-VDVAGFERLMKEQKDRARADAKARKGGFADLSEYRRLLDQGATEFTGYSEL 473

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           +                         + ++ +++ G  V  A  G+++E+V D+TP YAE
Sbjct: 474 Q-----------------------TEARIRGLLRDGVPVPAAHEGEEIELVLDRTPLYAE 510

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  D G  +G     ++ DVQK    + VH   +  G   T   ++  +D + R   
Sbjct: 511 SGGQDSDAGTIVGAHGAAEVLDVQKVDRKLVVHRVRITDGEFTTGAQVLAKVDPEWRLGA 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS TH++H AL  +LG    Q+GS   P  LR D    + +++A    +E+  N  +
Sbjct: 571 RQAHSGTHVVHAALRQVLGPEALQSGSYNKPGYLRLDFAWDQALSAATRSELEEVANRAV 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            Q+LPV     + ++A A GA AL G  Y+D VR+V +    GG  S  LCGGTHV  + 
Sbjct: 631 RQDLPVRVLYGSMQEAQAMGAIALFGETYDDTVRIVEI----GGPWSVELCGGTHVEHSS 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I +ESS+ +G+RR+EA  G  A   L+ +   +  LAS LKV    + GR+E +
Sbjct: 687 QIGPVAITAESSVGSGLRRVEAAVGIEAFHRLVAERTLVSQLASTLKVQPAELPGRIETL 746

Query: 764 WEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQ 817
            ++ +  +   A  +                 +A V  ++        + +L+++   ++
Sbjct: 747 LDKLKSAEKELAGLRAAALGNVAGTLAGGAIDVAGVALVAATAPEGTAAGDLRTLASDVR 806

Query: 818 KKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++    G++ L   +       + V    +     A +LA+    ++  G GGG+  +A
Sbjct: 807 GRLGDRPGVVALFAPAHASVPFAVAVNQGGIARGLAAGELAKAVLPLIE-GRGGGKKDLA 865

Query: 876 QSGGPNGNKADQAIA 890
           Q  G   ++  +AI 
Sbjct: 866 QGAGTRPDRIPEAID 880


>gi|153938938|ref|YP_001391861.1| alanyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|205830033|sp|A7GGF1|SYA_CLOBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152934834|gb|ABS40332.1| alanine--tRNA ligase [Clostridium botulinum F str. Langeland]
          Length = 879

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/908 (36%), Positives = 516/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFK+  I  AW+ +T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKKEIIPWAWEFITEILKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+  
Sbjct: 120 KDKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAVLDKVCELSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGIKNTFLHNLTDIVIENCYKNYPELEEKREYIKKVIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +     ++L+GD AFKLYDT+G P+++ ++IL   G   ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+         +E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGSEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E       G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDSFKAEVIDCKKNISGKVLHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++M+
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMD 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  I+SE+ 
Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKIISEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILNNIREIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGG GGRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|221195805|ref|ZP_03568858.1| alanyl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221184279|gb|EEE16673.1| alanyl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 882

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/908 (39%), Positives = 519/908 (57%), Gaps = 47/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  G ++ PSSSL+P  DP+L+  N+GM  FK  + G +       
Sbjct: 7   MTTAEIRKNFLAFFESKGCKVYPSSSLVPS-DPSLLLANAGMNQFKEYYQGIKTMKEIGA 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKC+R     ND+DN+G  NRH +FFEMLGNFSFGGY K  A   A + ++  +   
Sbjct: 66  TSCQKCLRT----NDIDNIG-DNRHLSFFEMLGNFSFGGYTKRDACTWAMEFISSPEHLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY TV+ +D+EA ++W  + G++ D I R+   DNFW+   TGPCGPCSEI+FDQ
Sbjct: 121 LPLDRLYFTVFTDDDEAAEIWHSL-GVAEDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQ 179

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G    G  P   ++G+RY+E WNLVF Q+++Q       LP  +IDTGMGLER+A ++Q 
Sbjct: 180 GPEFSGEKP--GDDGDRYLEFWNLVFTQYDRQEDGSMPELPHRNIDTGMGLERIAAIMQH 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296
             +NY+ D+   LI+  E+++G +Y+  N     + R++ DH R+ SF+I DGILP NEG
Sbjct: 238 AGSNYEGDIMTSLIELGEKLSGKRYQAGNEEVDRSLRILADHSRAVSFMIGDGILPGNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           R Y+LRR++R A+ + RL+G  +  M      +   +G AY EL++ ++LIE  L +E+E
Sbjct: 298 RSYILRRLLRHAVYHGRLVGIQKTFMAEYANEVVRLLGDAYSELVEKRVLIEGILTAEEE 357

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RFG TL+ G   L+  L  L  DE L+GDVAF L+DT+G P+D+ ++I    G A ++  
Sbjct: 358 RFGTTLEAGESKLEDELKKLTGDECLSGDVAFLLHDTYGFPIDLTREIAARAGHA-VNEA 416

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A+ EQ+ RARA +     G  + +W +L ++   T F GY+               
Sbjct: 417 QFDAAMAEQKQRARASANRDAWGKAQSVWVALSDRLDETVFDGYNHNELEGC-------- 468

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V A+V+ G+ V+ A  G +VEVV D+TPFYAE GGQ+GDTG    
Sbjct: 469 --------------RVVALVKGGQEVDCAAVGDEVEVVLDRTPFYAEMGGQVGDTGTLSA 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           D + +Q++D + K   +  H   VE G L T   L+  ID   R  +  NH+ATHLL  A
Sbjct: 515 DNLFVQVSDTKHKEGNLIAHVGQVEEGELHTGDVLIAVIDTGRRELIRRNHTATHLLDAA 574

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILGSHV+Q GS + PD LRFD TH + +TS EL  IE  +N  I    P+VT+IMN 
Sbjct: 575 LKLILGSHVNQAGSLVAPDRLRFDFTHFEALTSDELARIEGMINAEIFAAKPIVTQIMNI 634

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A+GA AL G KY D VRVVSV  ED    S  LCGGTH  +T E+ L  IVSESS+
Sbjct: 635 DEAKAAGAVALFGEKYGDVVRVVSVGEED-HPFSRELCGGTHAKNTAELGLFKIVSESSV 693

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            A  RRIEA+T   A S++  +  +L  +A  LKV    V  RVE++  + R+       
Sbjct: 694 GANSRRIEAVTSMGAISYVDERLVQLDMVAHGLKVRPEAVAARVEQLQSDLREAHKKAEA 753

Query: 777 R-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII--MLVG 829
                   ++     + H++     +   + ++  K+L+SV D ++       +  ++  
Sbjct: 754 ATVGAGSNRIAEALHNAHELDGYRCVITRLDDLSGKDLRSVWDGIRDASDGHPVACVIAS 813

Query: 830 ISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           ++ +KK ++L   T+  +   F+A  L +  A ++GG G GGRP+MAQ+GG + +  D A
Sbjct: 814 VTPDKKVALLAGATDTAVAAGFSAGTLIKDIAGLVGGRG-GGRPNMAQAGGVDISGIDVA 872

Query: 889 IAGVASFL 896
           +      L
Sbjct: 873 LEAAKQKL 880


>gi|325280523|ref|YP_004253065.1| alanyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324312332|gb|ADY32885.1| alanyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 877

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/920 (35%), Positives = 482/920 (52%), Gaps = 75/920 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G   P ++ V
Sbjct: 1   MKSAEIRQKFLDFFESKGHTIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNINPKHRRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ LT    LD
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEDAIAFAWEFLTGVMGLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY TV++         D EA K+W     LS D+I+     DNFW M + GPCGPCS
Sbjct: 121 KNRLYATVFEGSKEDGLEGDAEARKIWMNY--LSEDRILFGNKKDNFWEMGDMGPCGPCS 178

Query: 174 EIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +++    IEIWNLVFMQ+ ++       LP   +DTGMG
Sbjct: 179 EIHIDLRPEEERKLKSGRELVNQDNPLVIEIWNLVFMQYNRKADGSLENLPNHHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIA 287
            ER+   +Q KT+NYD D+F  +I    +++G+KY  ++      RVI DHLR+ SF I 
Sbjct: 239 FERLCMAVQGKTSNYDTDVFTPIIDEISRLSGLKYGVSHDADVAMRVIADHLRTISFSIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   E  M  L+P L   MG  YPEL+  + L
Sbjct: 299 DGQLPSNVKAGYVIRRILRRAVRYAYTYLDQKEAFMYRLVPVLIEVMGKHYPELVAQQEL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R E+  F +TLD+G+ LLD ++     ++   + G+VAF+LYDT+G PLD+ + I
Sbjct: 359 IEKVIREEENAFLRTLDKGIKLLDRIIEKTKAEDFLTIPGNVAFELYDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  +GL  ++   F   +E Q+ R+R+      S      W  L +     +F+GYD   
Sbjct: 419 LREKGL-VVNRREFKAEMEAQKERSRSA-----SSVDTDDWIELIDDDVQ-EFVGYDYTE 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV+ +                                  +VF+ TPFY E 
Sbjct: 472 VEVKITRYRKVVTKNKTF----------------------------YHLVFNITPFYGEG 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD+G  IG+   ++I D +K+          +         + +  +D   R   +
Sbjct: 504 GGQVGDSGVLIGEKETIRIIDTKKENGLTIHLAEKM---PEDVTQTFIAKVDEHKRVLTA 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLL +AL  +LG HV Q GS ++ + LRFD +H + +T  EL  +   VN +I 
Sbjct: 561 NNHSATHLLDYALRKVLGKHVEQKGSYVSDEHLRFDFSHFQKVTDEELAEVAAIVNRLIR 620

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            N+P+   R +    A A GA A+ G KY D VRV+          S  LCGGTHV +TG
Sbjct: 621 MNIPLEEHRSVPMAKAQAMGALAIFGEKYGDLVRVIKYGE------SVELCGGTHVPATG 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    I+SESS+ AG+RRIEAIT  +A  ++      ++ +    K +  N++  V+ +
Sbjct: 675 QIGFFKILSESSVSAGVRRIEAITADKAEEYINNSFAIIREMEKMFKSN-KNLMECVKNV 733

Query: 764 WEEYRKLQLIHAKRKLQ---LNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQK 818
            EE   L+    K   +   L  E L   K    D+N +   +S + + + K +   L+ 
Sbjct: 734 LEENEGLKKETEKFAKESLRLLKERLKNEKKVYRDINLIITNLS-IPAAQAKDIAFQLKG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           + +  +I + G     K  + ++++  + +    NA  + R +A+ + GG GGG+P  A 
Sbjct: 793 EYEK-VIFIAGGVNAGKPHLTVMISNSIAEDYGLNAGQIVREAAQEIKGG-GGGQPFFAT 850

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG      ++AI      +
Sbjct: 851 AGGAYPEGIEKAIEKAEKLV 870


>gi|315224360|ref|ZP_07866194.1| alanine--tRNA ligase [Capnocytophaga ochracea F0287]
 gi|314945750|gb|EFS97765.1| alanine--tRNA ligase [Capnocytophaga ochracea F0287]
          Length = 877

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/924 (35%), Positives = 489/924 (52%), Gaps = 76/924 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP Y+ V
Sbjct: 1   MTSQEIREQFLKFFKSKGHTIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNAKPKYKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAISWAWELLTEIYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++         D+EA+ +WK+   ++ + I+     DNFW M + GPCGPC+
Sbjct: 121 KENLYVTVFEGSEEDGVPFDQEAYDIWKER--IAENHILLGNKKDNFWEMGDQGPCGPCT 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + IEIWN VFM+F ++       LP  ++DTGMG
Sbjct: 179 EIHVDIRSDEEKAKVPGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+  VLQ+K +NYD D+F  LI   E++T  +Y   +          +  RVI DH+R
Sbjct: 239 FERLCMVLQKKQSNYDTDVFTPLIHKVEEITQSRYTSGDRVTPEQEQVNIAIRVISDHIR 298

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +F I DG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG  +PE
Sbjct: 299 AVAFAITDGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLSNQMGGTFPE 358

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L + + LI   ++ E+  F +TL++GL++LD ++ +    + L+G  AF+LYDT+G P D
Sbjct: 359 LEKQQFLIMSVIKEEEASFLRTLEQGLLMLDVMIQNSPGKQ-LSGGKAFELYDTYGFPKD 417

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   IL  +GL  +D  SF + L++Q+ R+RA      +      W  L++     +FIG
Sbjct: 418 LTALILSEKGLT-MDEASFEEQLQKQKERSRAA-----AQIKADDWVILRDDDEE-EFIG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L     + + R+                           VE    G   ++VF+ TP
Sbjct: 471 YDTLEAVVRLVKYRR---------------------------VESQKDGTHFQLVFNTTP 503

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ+GD G        L      KK   + +H +  E             +   +
Sbjct: 504 FYPEGGGQVGDKGTLQSANGELIYILDTKKENNLIIHIS--EHLPTNLNDPFKAEVHSIS 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R     NHSATHLLH AL  +LG+HV Q GS + P+ LRFD +H   +T  ELK +E  V
Sbjct: 562 REMAEANHSATHLLHQALREVLGTHVEQKGSRVAPETLRFDFSHFAKLTEEELKKVEQLV 621

Query: 640 NDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I + +P+   R +  + A+ SGA AL G KY DRVR++          S  LCGGTH
Sbjct: 622 NRRIFEKIPLQEHRNIPMQQAVESGAMALFGEKYGDRVRMIQFGD------SKELCGGTH 675

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG+I    I+SE ++ AGIRRIEAIT   A  +   Q++ ++ +   LK +  + V 
Sbjct: 676 VKNTGDIWYFKIISEGAVAAGIRRIEAITRGGAMKYFTEQEQLVEQIKETLK-NAQDPVK 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSK--ELKSVMD 814
            +  + EE   L     + + +   +  +  K    +VN +  ++ +VD++   LK +  
Sbjct: 735 AIRHLQEENAALHKELEQLRKEQAKQLKTSIKAEFTEVNGVQCLVKQVDAEVATLKDLAF 794

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRP 872
            L  ++++  I      +E KA +L  + +DL      +A  + R   K + GGG GG+P
Sbjct: 795 ELGNEVKNAFIFFASAHEEGKALLLCYINKDLAQAKGLDAGKIVRELGKYIHGGG-GGQP 853

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
             A +GG N     +A++ V  +L
Sbjct: 854 FFATAGGKNPGGITEALSKVKDYL 877


>gi|187778850|ref|ZP_02995323.1| hypothetical protein CLOSPO_02445 [Clostridium sporogenes ATCC
           15579]
 gi|187772475|gb|EDU36277.1| hypothetical protein CLOSPO_02445 [Clostridium sporogenes ATCC
           15579]
          Length = 879

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/908 (37%), Positives = 519/908 (57%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHFRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPSKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179
           + +LY+T+Y+ED+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+  
Sbjct: 120 KEKLYVTIYEEDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNRLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDSIFEVDTIKAVLDQVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + K  I++ ++ E+ER
Sbjct: 299 GYVLRRVLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKKEYIKKVIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +     ++L+GD AFKLYDT+G P+++ ++IL  +G   ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEQG-INIDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    TQF GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLSINTQFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       + S V  IV+  E   +   G K  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------LKSKVALIVENEEFKNQIEKGNKGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   V  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDSFKAKVIDCKKNISGKILHFVRVLEGKMSLEDEVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++ AELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEAELKEVEKIVNKEIMKANVVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHV ++GEI +  IVSE+ 
Sbjct: 635 IEEAKEQGAIALFDNKYKDDVRVVSV-----GEFSKELCGGTHVGNSGEIGMFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEAIT  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAITAFKAIEYVDHKNNILKDAAQILKCNEKELLNKLSHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGG GGRP MAQ+GG + NK ++AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEIAAIAGGGG-GGRPDMAQAGGKDPNKLEEAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|308276522|gb|ADO26421.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19]
          Length = 905

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/922 (34%), Positives = 486/922 (52%), Gaps = 63/922 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61
              IR  F   F K GH+ +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     
Sbjct: 18  THEIRERFTNHFVKAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNGTA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 77  TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWALLTDSVAEG 132

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++TVY +D+EA  +W K  G+  ++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 133 GFGLDPERLWVTVYLDDDEAADIWNKKIGIPTERIQRLGMADNYWSMGIPGPCGPCSEIY 192

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   +  RY+EIWNLVFMQ E+       N +    LPK +IDTG+G+
Sbjct: 193 YDRGAAY-GKEGGPIADDNRYMEIWNLVFMQNERGEGIGKDNFEILGPLPKKNIDTGLGV 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLI 286
           ER+A +LQ   N Y+ DL + +I  +E++TG  Y       +++  RVI DH R+   LI
Sbjct: 252 ERVACILQGVDNVYETDLLRPVIDVAEKLTGASYGEGAPHQDLIRFRVIADHSRTGMMLI 311

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  A LLG     +   +  +   M  +YPE+ + +  
Sbjct: 312 LDGVTPGNEGRGYILRRLLRRIIRSAHLLGAKGNTLEQFMNTIMDTMTPSYPEIAENRER 371

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I +   +E++ F KTL  G  L +     +  +  ++L+G  AFKL+DT+G P+D+  ++
Sbjct: 372 ILKVALTEEKAFLKTLASGTQLFEEKADEVKTEGKKLLDGASAFKLHDTYGFPIDLTLEM 431

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F+  + EQR+RA+A +     G  +   +        T+F GY  L 
Sbjct: 432 AAEAGLE-VDTAGFDSLMAEQRARAKADNRAKKHGHVDLSIYREWVDEHPTEFTGYSEL- 489

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  ++  G  V E  +G +VE++ + +P YAEA
Sbjct: 490 ----------------------STESKVLGMIAGGAKVNEVTAGDEVEIILEASPLYAEA 527

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ GD G  I     + + DVQK  + ++VH A V +G L    ++   +D Q R    
Sbjct: 528 GGQTGDRGTIIMGDTIVNVNDVQKIGKKLWVHKATVTQGGLSIGDTVSANVDKQWRHSAR 587

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL+H AL  +LG    Q GS   P  LRFD  +++ +T+ +L  I+   N  + 
Sbjct: 588 QAHSATHLIHAALRDVLGPTAVQAGSLNRPGYLRFDFNYTEALTADQLAQIQLITNQAVD 647

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + ++A A GA AL G  Y   VRVV +    GG  S  LCGGTHV  + +
Sbjct: 648 VDWTVNTIETSLDEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVEHSSQ 703

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I+ ESS+ +G+RRIEA +G  +  +L  +   ++ +A+ +K    ++  R+  + 
Sbjct: 704 IGPVSILGESSVGSGVRRIEAYSGLDSFQYLAKEKALVEGIAASMKSKTDDIPERIASLT 763

Query: 765 EEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
           ++ ++ +        A+ + Q         ++  V+ ++H +   V S +++++   L+ 
Sbjct: 764 QKLKEAEKAVADLRAAQLRNQAAKLLTDADEVNGVSVVAHRLTENVSSNDVRALALDLKS 823

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++     +I L+      K   ++  T+  +     A DLA++    +  G GGG+P MA
Sbjct: 824 RLGDKPAVIALIAEDGTGKTPFVVAATKAGVAQGVKANDLAKVLGSYI-QGNGGGKPDMA 882

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
           Q    +    D  +A +   ++
Sbjct: 883 QGSARDIAGFDSGVAAIKDEIR 904


>gi|284037267|ref|YP_003387197.1| alanyl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283816560|gb|ADB38398.1| alanyl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 890

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/933 (34%), Positives = 465/933 (49%), Gaps = 82/933 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FFQ   H ++ S+ L+  NDPTLMF NSGM  FK+ F G   P  + V
Sbjct: 1   MTSHEIRRHFLDFFQSKQHLIVASAPLVAKNDPTLMFNNSGMAQFKDFFLGNGTPPSKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL++VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAITWAWELLTEVYKLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY++V+          D+EAF LWK I G   D+II     DNFW M +TGPCGPCS
Sbjct: 121 KDRLYVSVFQGDAKDNVPFDQEAFDLWKPIVG--EDRIIYGNKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + +EIWNLVFMQF ++       LP   +DTGMG
Sbjct: 179 EIHVDLRTPEEIAEKPGKELVNADHPQVVEIWNLVFMQFNRKADGSLEALPARHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLI 286
            ER+   +Q K +NYD D+F   I+  E+++G+ Y        V  RVI DH+R+ SF I
Sbjct: 239 FERLCMAIQNKRSNYDTDVFTGTIKVIEEISGISYTAGTGMTDVAMRVISDHIRAVSFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG++P+N   GYV+RRI+RRA+ Y    L   EP M  L+P L  +    +PEL   + 
Sbjct: 299 ADGLVPSNAKAGYVIRRILRRAIRYGYSYLNLAEPFMTKLVPTLAMQFADVFPELTAQRD 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQD 403
            +   +R E+  F +TL  GL  LD ++  L  D    + G+  F+L DT G P D+   
Sbjct: 359 FVATVIREEEISFLRTLGTGLGRLDQIIGQLTTDGKTEIPGETVFELNDTFGFPADLTAL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I   + L  ID   F +AL+EQ++R+R       + ++   W  + E     +F+GYD  
Sbjct: 419 IAREKRLT-IDEAGFQKALQEQKARSRKD-----ASSSAGDWIDVNE-TDRVEFVGYDQP 471

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                + + RK+                                G +V+VV D+TPFYAE
Sbjct: 472 EAYAQIVKYRKIQN----------------------------KQGTQVQVVLDKTPFYAE 503

Query: 524 AGGQLGDTGCAIGDGI-------RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +GGQ+GDTG               +  T  +       V        +L    S+   I+
Sbjct: 504 SGGQIGDTGTLELFSGSDQIGTLTVLDTKKENDLTIHIVQDVTGIDDLLTEADSVYAVIN 563

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R   S NHSATHLLH AL  +LG+HV Q GS + PD LRFD +H   +T  +L  +E
Sbjct: 564 TTRRGLTSSNHSATHLLHAALRDVLGTHVGQKGSYVGPDALRFDFSHFSKVTDEQLAEVE 623

Query: 637 DNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
             VN+ I +++     R +    A   GA AL G KY D VRV++ +      +S  LCG
Sbjct: 624 RIVNEKIREDIKLDEKRNVPIGQAKELGATALFGEKYGDFVRVITFDPN----YSVELCG 679

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV +TG I L     E S+  GIRR+EA T   A + +  Q   +  L   LK    +
Sbjct: 680 GTHVPATGHIGLFKFTGEGSVSTGIRRVEAKTSAGAEALVNEQMAVVSELKELLKA-PKD 738

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIA-----DVNFMSHIISEVD 805
           VV  V+ + +E   LQ      + +   +           +        + +   +   +
Sbjct: 739 VVKAVQSLLDERAALQKQVEALQNEKVQQLKNQLLDKIETVNHNGGPGYSRLVERVEVPN 798

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL 863
           +  LK +   L+ K+ +  ++L G     K  + +++ + L+   + NA  + +  AK +
Sbjct: 799 ADALKQLAYDLKAKVDNLAVVL-GADINGKPQLAVMLPDSLIQDKKLNAGQVVKELAKNI 857

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            GG GGG+P  A +GG + +  D A+A     L
Sbjct: 858 KGG-GGGQPFFATAGGTDLSGLDAALAQGKELL 889


>gi|292670903|ref|ZP_06604329.1| alanine-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647524|gb|EFF65496.1| alanine-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 872

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/912 (35%), Positives = 518/912 (56%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + +R  +L+FF +K  H  L S SL+P NDPTL+   +GM P K  FTG+ KP +  
Sbjct: 1   MTGNELREAYLQFFAEKKDHLRLSSYSLVPENDPTLLLIGAGMAPLKPFFTGKMKPPHNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + T Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L
Sbjct: 61  IVTCQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVVEL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++++Y ED+EA  +W + + +  D I+ +   DNFW +   GPCGP SEI+ D G
Sbjct: 117 PKDKLWVSIYPEDDEARAIWLEQTDVLPDHIVAL--EDNFWEIGP-GPCGPDSEIYIDLG 173

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +R++EIWNLVF Q+++    E  IL   +IDTG GLER+A+V+Q
Sbjct: 174 EECGCGEPTCGIGCDCDRFLEIWNLVFTQYDRTEDGEYNILAHKNIDTGCGLERLASVVQ 233

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I+   +++ + Y  +    ++ +VI DH RS + +I DGILP+NEG
Sbjct: 234 NKKTNFETDLLYPIIEYISKISDVSYGKDPQKDISLKVIADHARSVAIMIMDGILPSNEG 293

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRR +RRA+ + R+LG T+P +   + A+      A  + ELI  +  I+  +  E
Sbjct: 294 RGYVLRRTLRRAIRHGRMLGITKPFLDGAVSAVVEIFRDAKDFSELIAKQDYIKRVIHVE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++RF  TL +G+ LL+  ++ L    + +LNG++ FKLYDT+G P ++ ++IL   G+  
Sbjct: 354 EDRFASTLAQGIELLNEEVTRLKSENETVLNGEIGFKLYDTYGFPRELTEEILHENGVT- 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   FN  +E+QR+RAR+                                        D
Sbjct: 413 LDDEGFNCEMEKQRTRARSARA-----------------------------ENQAVSVPD 443

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +     ++  +   + V AI  +G++V+    G+   ++   TPF+AE GGQ+GD G
Sbjct: 444 LSNVDTGSLMEDADATKATVVAIWHEGKLVDSLRDGETAGIILSTTPFHAEGGGQVGDEG 503

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   L +++ ++  +G   H A VE G ++   S+ + +D + +   + NH+ATHL
Sbjct: 504 SLRSELGYLTVSNTKRLPDGTVYHLAYVEEGQIQQGDSVEICLDTKKKLSSARNHTATHL 563

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ++G HV Q GS +TP+ LRFD T+ +P++  +L+ IE+ VN+ I  ++ +   
Sbjct: 564 LHAALRRVVGDHVQQAGSLVTPERLRFDFTNFEPVSEQQLRDIEELVNEEILCSIDLHIS 623

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A A GA AL G KY D VRVV V        S  LCGG+HV++TG+I L  IVS
Sbjct: 624 MMPIDEAKALGAMALFGEKYGDVVRVVRVP-----DFSIELCGGSHVTNTGQIGLFKIVS 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEAITG+ A ++       ++ L+  LK    ++V ++++   E + +Q 
Sbjct: 679 ESGVAAGVRRIEAITGRAACAYAAEMARTVQELSQKLKTRSEDLVAQIDKFMTERKSMQE 738

Query: 773 IH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                A+ + + + + L     ++ +   +    +     EL+++ D   +K+ SGI++L
Sbjct: 739 QLRSFAEFRDKADAQKLLMGVQEVGEFRVVVGKANVDSMDELRNIADLTCEKLDSGIVVL 798

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K S+++   +  +    +A ++ + +AK +GGGG GGRP MAQ+GG N  +  
Sbjct: 799 GAV-IDDKVSLVVKADKAAVKLGAHAGNIIKAAAKAVGGGG-GGRPDMAQAGGKNPEQLS 856

Query: 887 QAIAGVASFLKK 898
           QA     + +++
Sbjct: 857 QAFDEAVAVIRQ 868


>gi|256818974|ref|YP_003140253.1| alanyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256580557|gb|ACU91692.1| alanyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 877

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/924 (35%), Positives = 489/924 (52%), Gaps = 76/924 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP Y+ V
Sbjct: 1   MTSQEIREQFLKFFESKGHTIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNAKPKYKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAISWAWELLTEIYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++         D+EA+ +WK+   ++ + I+     DNFW M + GPCGPC+
Sbjct: 121 KENLYVTVFEGSEEDGVPFDQEAYDIWKER--IAENHILLGNKKDNFWEMGDQGPCGPCT 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + IEIWN VFM+F ++       LP  ++DTGMG
Sbjct: 179 EIHVDIRSDEEKAKVPGRDLVNNDYPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+  VLQ+K +NYD D+F  LI   E++T  +Y   +          +  RVI DH+R
Sbjct: 239 FERLCMVLQKKQSNYDTDVFTPLIHKVEEITQSRYTSGDRVTAEQEQVNIAIRVISDHIR 298

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +F I DG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG  +PE
Sbjct: 299 AVAFAITDGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLSNQMGGTFPE 358

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L + + LI   ++ E+  F +TL++GL++LD ++ +    + L+G  AF+LYDT+G P D
Sbjct: 359 LEKQQFLIMSVIKEEEASFLRTLEQGLLMLDVMIQNSPGKQ-LSGGKAFELYDTYGFPKD 417

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   IL  +GL  +D  SF + L++Q+ R+RA      +      W  L++     +FIG
Sbjct: 418 LTALILSEKGLT-MDEASFEEQLQKQKERSRAA-----AQIKADDWVILRDDDEE-EFIG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L     + + R+                           VE    G   ++VF+ TP
Sbjct: 471 YDTLEAVVRLVKYRR---------------------------VESQKDGTHFQLVFNTTP 503

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ+GD G        L      KK   + +H +  E             +   +
Sbjct: 504 FYPEGGGQVGDKGTLQSANGELIYILDTKKENNLIIHIS--EHLPTNLNDPFKAEVHSIS 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R     NHSATHLLH AL  +LG+HV Q GS + P+ LRFD +H   +T  ELK +E  V
Sbjct: 562 REMAEANHSATHLLHQALREVLGTHVEQKGSRVAPETLRFDFSHFAKLTEEELKKVEQLV 621

Query: 640 NDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I + +P+   R +  + A+ SGA AL G KY DRVR++          S  LCGGTH
Sbjct: 622 NRRIFEKIPLQEHRNIPMQQAVESGAMALFGEKYGDRVRMIQFGD------SKELCGGTH 675

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG+I    I+SE ++ AGIRRIEAIT   A  +   Q++ ++ +   LK +  + V 
Sbjct: 676 VKNTGDIWYFKIISEGAVAAGIRRIEAITRGGAMKYFTEQEQLVEQIKETLK-NAQDPVK 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSK--ELKSVMD 814
            +  + EE   L     + + +   +  +  K    +VN +  ++ +VD++   LK +  
Sbjct: 735 AIRHLQEENAALHKELEQLRKEQAKQLKTSIKAEFTEVNGVQCLVKQVDAEVATLKDLAF 794

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRP 872
            L  ++++  I      +E KA +L  + +DL      +A  + R   K + GGG GG+P
Sbjct: 795 ELGNEVKNAFIFFASAHEEGKALLLCYINKDLAQAKGLDAGKIVRELGKYIHGGG-GGQP 853

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
             A +GG N     +A++ V  +L
Sbjct: 854 FFATAGGKNPGGITEALSKVKDYL 877


>gi|315174460|gb|EFU18477.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1346]
          Length = 880

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/918 (37%), Positives = 508/918 (55%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  +L+FF+  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSQVRQMYLDFFKSKGHSVEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +L++TVY +D EA ++W+   GLS D I  I   DNFW +   GP GP +EIF
Sbjct: 117 WLAFDPEKLHVTVYPKDTEAKRIWRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F    +     LP  +IDTGMGLE
Sbjct: 174 YDRGEEFLDIPEDDPENYPGGENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I D
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +     + L+G + FKLYDT G P+++ +++  
Sbjct: 354 KVVRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L   
Sbjct: 414 DEGLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+Q   +V EA +G   E++F +TPFYAE GG
Sbjct: 471 -----------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    V  KKA      H +     L       L +D + R ++  
Sbjct: 507 QIADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I
Sbjct: 627 AIPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R LQ  + +   +L  +           I  V +++  ++  D  +L+ + D  ++K
Sbjct: 742 QQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   ++++K S+L  +T+D+      A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 802 ELSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      A+A V ++L
Sbjct: 860 GKNPAGIADALAEVENWL 877


>gi|170755913|ref|YP_001782179.1| alanyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|205830032|sp|B1IJG7|SYA_CLOBK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169121125|gb|ACA44961.1| alanyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 879

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/908 (36%), Positives = 516/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFK+  I  AW+ +T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKKEIIPWAWEFITEILKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+  
Sbjct: 120 KDKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAVLDKVCELSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGIKNTFLHNLTDIVIENCYKNYPELEEKREYIKKVIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +     ++L+GD AFKLYDT+G P+++ ++IL   G   ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+         +E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGSEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E       G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDSFKAEVIDCKKNISGKVLHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  IVSE+ 
Sbjct: 635 IEEAKEQGAIALFDNKYKDDVRVVSV-----GNFSKELCGGTHVSNSGQIGMFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILNNIREIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGG GGRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|309810794|ref|ZP_07704600.1| alanine--tRNA ligase [Dermacoccus sp. Ellin185]
 gi|308435274|gb|EFP59100.1| alanine--tRNA ligase [Dermacoccus sp. Ellin185]
          Length = 904

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/930 (36%), Positives = 504/930 (54%), Gaps = 73/930 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L+FF+  GH ++PS+ LI  +DP L+F N+GMVPFK  F GQ  P +   
Sbjct: 1   METAEIRRRWLQFFEGKGHTVVPSAPLI-YDDPNLLFVNAGMVPFKPYFLGQATPTFTRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++ VG+T+RH TFF+M GNFSFG YFKE AI+ AW+LLT+     
Sbjct: 60  TSVQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKEDAIKFAWELLTRHQSQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ TV++ D+EA+ +WK + G+ A +I R   NDN+WSM   GP GPCSEIF
Sbjct: 116 GYGLDADRLWPTVFESDDEAYAIWKDVIGVDAARITRRDANDNYWSMGVPGPGGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           FD+G    G   G + + +RY+EIWNLVFMQ+E      + +      LP+ +IDTGMGL
Sbjct: 176 FDRGAEY-GVEGGPAVDEDRYMEIWNLVFMQYELSAVRSKADFDVAGELPRRNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280
           ERMA+VLQ   N Y+ID    ++  + ++TG +Y             + V+ RV+ DH+R
Sbjct: 235 ERMASVLQGVDNLYEIDEVYPVLDMAAEMTGKRYGANSGQSAASSHPDDVHLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           SS  LI DG+ P NEGRGYVLRR++RRA+   RLLGY +P + HL+P     M  +YPEL
Sbjct: 295 SSLMLIGDGVTPGNEGRGYVLRRMLRRAVRAMRLLGYADPALPHLVPISMERMSQSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK---------DEILNGDVAFKLY 391
                 I +   +E+E F +TL  G  +LD  ++   +           +L GD AF L+
Sbjct: 355 KTDFARISQIAYAEEEAFRRTLVAGTTILDTAVAKAKQTTDQQAGGDKPVLTGDQAFSLH 414

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G P+D+  ++   +G   +D   F + ++EQR RA+A +    +G  +   ++   +
Sbjct: 415 DTYGFPIDLTLEMAAEQG-VSVDEAGFCRLMDEQRQRAKADAKAKKAGHGDVAVWTQLRE 473

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            GAT+F+ Y+ L+                         + V+ +V  G  VE+   GQ  
Sbjct: 474 AGATEFLAYETLQ-----------------------AEASVRGLVANGSAVEQLEPGQSG 510

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +VV D+T FYAE+GGQ+ D G  +    RL++ DVQ+  +G+  H   V  G +R    +
Sbjct: 511 QVVLDRTSFYAESGGQIADEGIIVTPAGRLKVVDVQRPVKGLIAHTVEVLDGPVRVGEGV 570

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D + R      HS TH++H AL  +LG    Q+GS   P  LR D   +  ++   
Sbjct: 571 HTQVDPEWRISACQAHSGTHVVHAALREVLGPSALQSGSYNKPGYLRLDFAWNSALSPET 630

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              IE+  N  + ++LPV  + M   +A   GA AL G  Y+++VRV+ +    GG  S 
Sbjct: 631 RSEIEEVSNLALRRDLPVAAQYMTLPEAKEWGAIALFGETYDEQVRVIEI----GGPWSR 686

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGGTHV+ + +I  L +  ESS+ +G+RR+EA  G  A  +L  +   +  L S  K 
Sbjct: 687 ELCGGTHVAHSSQIGALTLTGESSVGSGVRRLEAFVGIDAMRYLAKERALVADLTSMTKA 746

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDS 806
             G +  ++ E+    +  +   ++ K Q               +  V F+ H    +D+
Sbjct: 747 QPGELKDKISEMLTRIKDAERELSRLKQQQMAAAAGSLVEQAKDVFGVRFIGHHDDAIDA 806

Query: 807 KELKSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              +++   L+ K+      ++ + G+SK +   V+         R  A DL +++A VL
Sbjct: 807 DAARAMATDLRAKLGDATPSVVAVGGVSKGRPVIVIATNAPAREWRVKAGDLVKVAAGVL 866

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           GGGG GG+P +AQ GG + +K   AIA V 
Sbjct: 867 GGGG-GGKPDLAQGGGQDASKLGAAIAEVE 895


>gi|325963401|ref|YP_004241307.1| alanyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469488|gb|ADX73173.1| alanyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 892

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/924 (34%), Positives = 493/924 (53%), Gaps = 64/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +++FF   GH  +PS+SL+  +DP+L+FT +GMVPF    T +E+  Y   
Sbjct: 1   MKSQEITKRWVDFFVSKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEAPYSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  VSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAWELLTTGVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++TVY+ED+EA  LW K +G+ A++I ++  +DN+W   + GP GPCSEI+
Sbjct: 116 GYGLDPERLWVTVYEEDDEAKDLWLKNTGVPAERIQKMGKSDNYWHTGQPGPAGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   +  RYIEIWNLVFMQ++      +++      LPK +IDTG+G+
Sbjct: 176 YDRGPAY-GVEGGPLADETRYIEIWNLVFMQYQIENVRSKEDFDVVGELPKRNIDTGLGM 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281
           ER+A +LQ   N Y+ D  + +I  + +++G +Y            + V  RV+ DH+RS
Sbjct: 235 ERLAMILQGVENMYETDQVRPVIDKAAELSGKEYTSAETDEDPHHTDDVRMRVVADHIRS 294

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LI+DG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP + 
Sbjct: 295 ALMLISDGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEQACLPELLPASRDAMKGVYPVVD 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDI 400
                I     +E++ F +T+  G   L+  +      ++ L+G+ AF L+DT+G P+D+
Sbjct: 355 TDFARISRIAYAEEKAFLRTIASGTARLEDAVRESKAANKPLSGEDAFTLHDTYGFPIDL 414

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D  +F   ++EQR RA+A + G   G  +   F      G T F GY
Sbjct: 415 TLEMAEEAGLK-VDEAAFRSLMQEQRQRAQADAKGKKGGHADLSAFQELLGQGETVFTGY 473

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
             L G                        S V+ I+  G  V++A +G ++E+V  +TPF
Sbjct: 474 SELDG-----------------------ESRVRGILTGGRPVQQASTGDEIELVLAETPF 510

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAEAGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G +  +  +   +D + R
Sbjct: 511 YAEAGGQAADTGLITGDGFVVEVLDVQRPLKGLSVHKAIVREGEIGADSLVRAAVDRERR 570

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                 H+ TH++H AL  ILG   +Q GS      LRFD    + +++A    IE+  N
Sbjct: 571 HAAEQAHTGTHIVHAALHQILGPEATQRGSFNKAGYLRFDFAWGEGLSTATRSEIEEVSN 630

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  N  V T++M   +A A GA AL G  Y + VRVV +     G  S  LCGGTHVS
Sbjct: 631 LAIRNNYAVDTKVMPLAEAKALGAMALFGENYGNEVRVVEI----DGAWSRELCGGTHVS 686

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  I  L ++ E S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R+
Sbjct: 687 NTSLIGSLSLLGEQSVGSGNRRVEAFVGMDAFRHLAAERALVTELTEMLKVPSGQLADRI 746

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD-SKELKSVMD 814
                + +  +    + + +      +           V+ ++H   +V  + +++ +  
Sbjct: 747 ATTLAKLKATEKELDRLRKEQLAASAAQLVSTATDAGGVSVIAHDAGQVSGADDIRGLAL 806

Query: 815 ALQKKIQSGI--IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            L+ ++ SG   + + G+S ++   ++            A  L RL+A +LGGGG GG+ 
Sbjct: 807 DLRNRLGSGAATVAVAGVSNDRPVILVATNEAAREAGVKAGALVRLAAGILGGGG-GGKD 865

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
            +AQ GG +  K  QA+A V   +
Sbjct: 866 DVAQGGGTDAGKVPQALAAVVDAI 889


>gi|298243740|ref|ZP_06967547.1| alanyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297556794|gb|EFH90658.1| alanyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 880

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/909 (37%), Positives = 508/909 (55%), Gaps = 52/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL++F   GH  +PSSSL+P NDPT+M T +GM      F G+E P    +T
Sbjct: 8   TSTEIRARFLDYFASKGHVKVPSSSLVPRNDPTVMLTTAGMQQMIPYFLGRETPPGSRLT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC R      D+D VG   R  TFFEMLGNFS G YFK  AI  AW+ LT+   L  
Sbjct: 68  SSQKCFRT----TDIDIVGN-ERTLTFFEMLGNFSVGDYFKREAITFAWEFLTQVIKLPA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQGE 181
           +RL+ TV+ ED+EA + W +I+G   + I+R+   DN+W     +GPCGP SEI++D+G 
Sbjct: 123 QRLHPTVHPEDDEAPRYWNEIAGYPDEAIVRL--EDNWWGPPGASGPCGPDSEIYYDRGV 180

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G        + ER++EIWNLVFMQF Q     R  LPK +IDTGMGLER++ V+Q 
Sbjct: 181 EHGCGRADCKPGCDCERFLEIWNLVFMQFFQDRDGGRTPLPKTNIDTGMGLERLSMVVQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K + +D D+F+ +I    Q+TG  Y        + RVI DH R+  FL ADG+LP+NEGR
Sbjct: 241 KESVFDTDIFRAIIDHFAQLTGKTYGQETRVDTSLRVIADHARALVFLAADGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+ RR++RRA+ + +LLG  +P +      +   MG  Y EL   +  I + L  E+++
Sbjct: 301 GYIFRRVLRRAVRHGKLLGLDQPFLSIAADTVIKLMGDYYTELRTQRDRIVDVLSLEEKK 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL+ GL LL  +LS L + EI  + G   FKLYD+HG P+++ Q+I   +G   ID 
Sbjct: 361 FSQTLNTGLQLLTSLLSDLRQKEISVIPGTEVFKLYDSHGFPVELTQEIASEQGFT-IDA 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F QA+++Q+ R+RA S    +   E     + ++ G T+F GY  + G          
Sbjct: 420 AGFEQAMQQQQERSRAASNFAQADH-ETNLDEVLQRIGPTKFTGYQGIAG---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        +  V A+   G  VE   + Q+   + D TPFYAE+GGQ+GD G  +
Sbjct: 469 -------------TGKVVALFVDGREVESISAPQQALAILDATPFYAESGGQIGDRGDLL 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++ D ++  +G++VH+  +  G LR   S+   +  Q R     NHSATHLLH 
Sbjct: 516 AQAGVFKVQDTRRPVKGLYVHYGEIAEGYLRVGDSVQAEVISQRREDTMRNHSATHLLHK 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+ V Q GS + P+ LRFD +  + +T+ EL  I+  VN  I  + PV T IM 
Sbjct: 576 ALRDLLGTQVEQRGSLVEPERLRFDFSSQRGLTTDELAQIDAQVNRWIRADYPVDTTIMP 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A+A+GA AL G KY+D VRVVS+        S+ LCGGTH +STG+I L   V E+S
Sbjct: 636 IQEALATGAMALFGEKYDDLVRVVSMGS------STELCGGTHCASTGQIGLYLTVQETS 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+TG+ A ++L  +   + SLA+ L+V    +  RVE++  E   L+   A
Sbjct: 690 VAAGIRRIEALTGRAAEAYLRRRSALVDSLAARLQVQTDTLEARVEQMQHELSTLRKQVA 749

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           +   +  V       L   +++ V  ++  +   D K L+ + + ++ K++   ++++  
Sbjct: 750 QFMRENAVRQVETLVLQGQELSGVTIIATSVDVPDDKVLREMGEMMRSKLKQPHVVVLAA 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E++ ++ + V   L  R  +A  +A    + LGG G GGRP +AQ GG N  +   A+
Sbjct: 810 PLEERIALQVNVEPSLTKRGLHAGKIAAAVGQKLGGKG-GGRPDVAQGGGKNKAELGAAL 868

Query: 890 AGVASFLKK 898
             V  F+++
Sbjct: 869 DLVTQFVRE 877


>gi|262202250|ref|YP_003273458.1| alanyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262085597|gb|ACY21565.1| alanyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 900

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/933 (35%), Positives = 478/933 (51%), Gaps = 73/933 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+SL+  +DP L+F N+GMVPFK  F G++ P +   
Sbjct: 1   MQTHDIRKRFLDHFIKAGHTEVPSASLL-LDDPNLLFVNAGMVPFKPYFLGEQTPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D+D VG T RH+TFF+M GNFSFG YFK  AI  AW LLT      
Sbjct: 60  TSVQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGDYFKREAITFAWTLLTGSVENG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + +   +L+ TVY +D+EA  +W+   G+ A +I R    DN+WSM   GPCGPCSEIF
Sbjct: 116 GYGISPDKLWPTVYLDDDEAEAIWRDEIGVPAQRIQRRGMKDNYWSMGVPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+     +        LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GVEGGPEADEDRYIEIWNLVFMQNERGAGGAKDDYEILGPLPKKNIDTGMGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279
           ER+A +LQ   N Y+ DL K +I  + +VTG  Y              + V  RVI DH 
Sbjct: 235 ERVACLLQGVDNVYETDLLKPIIDLAAEVTGRAYGAGNHDDRGSAAHEDDVKFRVIADHT 294

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R+S+ LI DG+LP N+GRGYVLRR++RR +  ARLLG  EP M   +      M  +YPE
Sbjct: 295 RTSAMLIGDGVLPGNDGRGYVLRRLLRRVVRSARLLGAEEPTMGAFIGRAIDLMSPSYPE 354

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLL--DGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           L + +  I      E+  F KTL  G  L       +       ++G  AF L+DT+G P
Sbjct: 355 LAEQRDHIVSVAVGEETSFSKTLAAGSKLFADAAAATKAAHRSTISGSDAFTLHDTYGFP 414

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++    GL  +D   F   + EQ+ RA+A +    +G  +   +      G T+F
Sbjct: 415 IDLTLEMAAEAGLE-VDQAGFTGLMAEQKQRAKADATARKTGHADVAVYREFLDRGPTEF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            G+D L                          + V  +V  G  V  A  G ++ V+ D+
Sbjct: 474 TGFDELVS-----------------------EAKVLGLVADGARVPAATPGTELTVILDR 510

Query: 518 TPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           TP YAE+GGQ+ D G    G G+RL++TDVQK  + +++H  +V+ G +     ++  +D
Sbjct: 511 TPLYAESGGQIADVGTITTGSGVRLRVTDVQKLGKSVWLHKVVVDEGEIAEGDEVLAAVD 570

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R   +  HS TH++H AL  +LG   +Q GS   P  LRFD     P+T ++ + IE
Sbjct: 571 AGWRHGATQGHSGTHMVHAALREVLGPGATQAGSLNRPGYLRFDFHQGSPLTDSQKRQIE 630

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N  +  N PV T      +A + GA AL G  Y D VRVV +    GG  S  LCGG
Sbjct: 631 EISNSAVEANYPVHTFETGLAEAKSMGALALFGENYGDVVRVVEI----GGPFSMELCGG 686

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV+++ +I  + ++ ESS+ +G+RR+EA  G  +   L  +   L  LAS LKV    V
Sbjct: 687 THVAASSQIGPVTLIGESSVGSGVRRVEAYVGMDSFRFLSKERALLAGLASSLKVPSEEV 746

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELK 810
            GRVE++    R  +    K +        +        +     +   +   +D+  L+
Sbjct: 747 PGRVEQLVTRLRDAEKQLEKVRADAARSAAAGLVETAEPVGSTLLVGGRLPDGLDANGLR 806

Query: 811 SVMDALQKKIQS--GIIMLVGISKEK----KASVLIVVTEDLLD-RFNAVDLARLSAKVL 863
           ++   L+ ++     +I+L  ++       K    +  T    D    A DL R +A +L
Sbjct: 807 TIATDLRGRVADRAAVIVLFSVTDAGDGTTKVPFAVATTAAARDAGIKAGDLVRETAPLL 866

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            GG GGG+P +AQ  G +    + AIA V   +
Sbjct: 867 -GGRGGGKPDLAQGSGTDATGIETAIARVRELI 898


>gi|323140610|ref|ZP_08075534.1| alanine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322414874|gb|EFY05669.1| alanine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 873

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/909 (36%), Positives = 491/909 (54%), Gaps = 58/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FFQ  GH +LPS+SLIP +DPTL+   +GM PFK  FTG+ KP    +
Sbjct: 4   MTGNEIREKFLKFFQDRGHLMLPSASLIPQDDPTLLIIGAGMAPFKPFFTGKMKPPATRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVGRT RHHT+FEMLGNFSFG YFK+  I  +W+ LTKE  L 
Sbjct: 64  TTCQKCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWSWEFLTKELGLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LYIT++ ED+EAF +W  + G+  D I+R+   DN+W +  +GPCGP SEI  D G 
Sbjct: 120 GDKLYITIHTEDDEAFDIWHNVVGVPEDHIVRLA--DNWWEIG-SGPCGPDSEIHIDLGP 176

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++EIWNLVF QF Q        L   +IDTG GLER+A+V+Q 
Sbjct: 177 ERGCGKPTCGPGCDCDRFLEIWNLVFTQFNQMPDGTYPPLKNKNIDTGAGLERLASVVQG 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K +N++ DL   +I+ + ++  ++Y  +    V+ +VI DH+RS +F+I DGILP+NEGR
Sbjct: 237 KPSNFETDLIFPIIEYAAKIANVEYGKDKATDVSLKVIADHVRSMTFMIGDGILPSNEGR 296

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ +ARLLG  E  +   +  +    G AYP L++    I++ +  E+  
Sbjct: 297 GYVLRRILRRAIRHARLLGINEMFLTGAVDVVIGMFGHAYPNLVEKADFIKKVVEMEETS 356

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL +G  LL+  +  L      +L+G  AFKL DT G P ++ ++IL   G+  +D 
Sbjct: 357 FLRTLKQGCELLNEEIEKLKAENKTVLDGATAFKLNDTFGFPWELTEEILEEAGMT-MDK 415

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+ ALE QR  AR                                 +  + +  +   
Sbjct: 416 EGFDAALEVQRKMAREARND----------------------------KEGRPVVYNTSG 447

Query: 476 LCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +             + +  +      + +E A  G  V V+ D T F+AE GGQLGD G 
Sbjct: 448 INVAELKVDEAATEAKIVKMYPAHDAQPIENAADGTDVAVICDVTAFHAEGGGQLGDIGT 507

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                  + +   +K  +G  +    V  G +    ++   +D   +  ++ NH+ATHLL
Sbjct: 508 ITASTGVIAVNVTKKLPDGAVIMIGSVTEGTVAVGDAVTFAVDKARKMDIARNHTATHLL 567

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV+Q GS + PD LRFD +H   +T+ ELK +E  VN+ +     V    
Sbjct: 568 HAALKQVLGAHVNQAGSYVGPDRLRFDFSHFSQVTAEELKEVEAIVNEQVLAGKAVNIEE 627

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +  E+A   GA AL G KY + VRVV+V        S   CGG+HVS+T +I +  IVSE
Sbjct: 628 LPIEEAKKKGATALFGEKYGNIVRVVTVP-----DFSMEFCGGSHVSNTAQIGMFKIVSE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            S  AG+RRIEA+TG  A +H+   +E +  LA+ LK    +V  R+E +  E +  Q  
Sbjct: 683 GSSGAGVRRIEAVTGHGAVAHVNATEEMVNGLAAELKCRCCDVPTRLEALQCELKAAQKK 742

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   ++    +S           V  +   ++      L+++ D ++ K+   ++  +
Sbjct: 743 AEELAAEIAKVQVSNVADQIKDANGVPVLVQKVNADSVDALRNLGDQMRDKVGGVVV--L 800

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                +K S+L + T+D + +  +A ++ +  AK+ GGGG GGRP MAQ+G  +  K D+
Sbjct: 801 AAVMGEKVSILTMATKDAVAKGVHAGNIVKAVAKLCGGGG-GGRPDMAQAGAKDVAKVDE 859

Query: 888 AIAGVASFL 896
           A+A     +
Sbjct: 860 ALAAAFDIV 868


>gi|149369737|ref|ZP_01889589.1| alanyl-tRNA synthetase [unidentified eubacterium SCB49]
 gi|149357164|gb|EDM45719.1| alanyl-tRNA synthetase [unidentified eubacterium SCB49]
          Length = 872

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/919 (36%), Positives = 481/919 (52%), Gaps = 72/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FLEFF+   H ++PS+ ++  +DPTLMF NSGM PFK  F G  +P    +
Sbjct: 1   MKANEIRAAFLEFFESKKHSIVPSAPMVLKDDPTLMFVNSGMAPFKEFFLGNAQPKNTRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+   +D
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKEEAIAWAWELLTEVLKID 120

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  LY+TV++          D EA+ +WKK   ++ D+I++    DNFW M + GPCGPC
Sbjct: 121 KDMLYVTVFEGSDDADNLKMDTEAYDIWKKY--IAEDRILKGNKKDNFWEMGDQGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + +EIWNLVFMQ+ ++      ILP   IDTGM
Sbjct: 179 SEIHVDIRSAEEKAAVDGKSLVNMDHPQVVEIWNLVFMQYNRKANGTLEILPNKHIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ+  +NYD D+F  +I+  E +T  +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMVLQDVKSNYDTDVFTPIIREIETITDTEYGKDEKIDIAIRVISDHVRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L ++MG A+PE+   K 
Sbjct: 299 ADGQLPSNNGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVTVLVSKMGEAFPEIKSQKQ 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LIE  ++ E+  F +TLD+GLVLLD ++        ++G   F+L DT+G P D+   IL
Sbjct: 359 LIENVIKEEESSFLRTLDQGLVLLDRMIEGQKGSTEISGAKVFELKDTYGFPEDLTDLIL 418

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G        F Q L EQ++R +       S +    W  L +     +F+GYD L  
Sbjct: 419 REKGYT-YSKEEFEQKLAEQKARGKEA-----SESKNDDWTILLDDAEE-EFVGYDRLSA 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  +   RK                           V     G+  ++VF+ TPFY E G
Sbjct: 472 NVKLTRYRK---------------------------VTSKKDGEMYQLVFNLTPFYPEGG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G     G  +      KK   + +H    +        +    +D  +R ++  
Sbjct: 505 GQVGDKGYVQAPGGDVLYILDTKKENNVIIH--FTKNLPNNLTETFKAQVDENHRFRIEC 562

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH  L  ILG+HV Q GS +    LRFD +H   +T+ EL+ +ED VN  IA 
Sbjct: 563 NHSATHLLHQGLREILGTHVEQKGSSVHSKYLRFDFSHFSKVTAEELQEVEDFVNARIAG 622

Query: 646 NLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            L     R +  E+AIA GA AL G KY D VR V          S  LCGGTHV +T +
Sbjct: 623 RLDFEEKRAVPMEEAIAEGAMALFGEKYGDAVRTVRFG------QSIELCGGTHVKNTAD 676

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SES++ +G+RRIEAIT    ++H    D+    + S L  ++  V   +E+I 
Sbjct: 677 IWHFKIKSESAVASGVRRIEAITNHALKNHFSDNDKAFSEVKSLLNNTKKPV-EAIEKIQ 735

Query: 765 EEYRKLQLIHAKR---KLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKK 819
            E  +L+    +    K +    DL     +I   NF++  + ++D+  LK +   L  +
Sbjct: 736 AENSELKKQIEQLLKDKAKNIKGDLKNQIVEINGANFLAKEL-DLDAGGLKDLAFELGGE 794

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           I++ + +L G     KA +   + +DL      NA  + R   K + GGG GG+P  A +
Sbjct: 795 IEN-LFILFGSKAGGKALLTCYIDKDLAKEKDLNAGTIVRELGKHIQGGG-GGQPFFATA 852

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N    ++A+  V +++
Sbjct: 853 GGKNPEGIEKALEAVKAYI 871


>gi|332179704|gb|AEE15393.1| alanyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 854

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/900 (36%), Positives = 517/900 (57%), Gaps = 52/900 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL +F++ GH +LPS SL+P  DPT++FT +GMVPFK  F G+E+P ++  
Sbjct: 1   MTSDDIRRLFLNYFKERGHTVLPSFSLVPE-DPTILFTIAGMVPFKPYFLGREEPPFKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     ND++ VG+T RHHTFFEMLGNFSFG YFKE+AI  AW  +T+   L 
Sbjct: 60  TTSQKCLRT----NDIEEVGKTARHHTFFEMLGNFSFGDYFKEKAIPFAWVFVTEVLHLQ 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+IT+Y +D+E++++W+ +  + A+KI R    DNFWS    GPCGPCSEI++D+GE
Sbjct: 116 KERLFITIYKDDDESYEIWRSL-DIPAEKIYRSGEKDNFWSAGPVGPCGPCSEIYYDRGE 174

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P  S   + +R++EIWNLVFMQ+ +  +    +L K  IDTGMGLER+A+VLQ 
Sbjct: 175 NFGCKRPDCSPLCDCDRFLEIWNLVFMQYNRDEESNLTLLSKKGIDTGMGLERIASVLQG 234

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+ DL   +I+    +TG++Y+G  I+  RV+ DHLR + F I+DG+LP+NEGRGY
Sbjct: 235 KDSNYETDLIYPIIEKLSSITGIEYKGKGIIPLRVMSDHLRGAVFAISDGVLPSNEGRGY 294

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           V+RR++RRA+ ++ L GY  P +   +P +      +YPEL + K  I + +RSE+E+F 
Sbjct: 295 VVRRLLRRALTFSHLSGYQTPFIYKAVPTVSNIYRHSYPELFEKKDYIIDAIRSEEEKFS 354

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           ++L  GL + + ++  + KD I++G++AF LYDT+G P+++ +++       G+DI  FN
Sbjct: 355 QSLKDGLSMFNKLMPQIKKDGIISGEIAFLLYDTYGFPVELTKEMAAEFN-IGVDIEGFN 413

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + L ++++ +R  S  +           +      ++F+GYD L+               
Sbjct: 414 ELLMQRKNLSRQGSQFVD---------EIITTSFTSEFVGYDNLK--------------- 449

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    +S +  I +    V   ++G++  ++ ++TPFY E+GGQ+ D G  + +  
Sbjct: 450 --------TNSKILGIYKNNNEVRSLLAGEEGYIILNKTPFYPESGGQVSDIGYIVSENS 501

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++T VQ++ + IF     VE G       +   ID + RR  S NH+ TH+LH  L  
Sbjct: 502 TFRVTSVQREKDAIFHF-GKVESGSFCAGDYVEAEIDIKRRRLSSSNHTCTHILHAVLRE 560

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
             G  V Q GS ++ + LRFD   S  ++  ++  IE +VN II +N  V+ + M+ EDA
Sbjct: 561 KFGETVKQKGSFVSDELLRFDF-FSNALSDEDIADIERSVNKIIMENFKVIVQEMDLEDA 619

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I SGA AL   KY  RVRVVS++       SS LCGGTHV  TGEI    IV + SI + 
Sbjct: 620 IKSGAIALFSDKYKSRVRVVSIDS-----VSSELCGGTHVKMTGEIGTFVIVKQESIASS 674

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW--EEYRKLQLIHAKR 777
           +RRIEA TG +A  +   + + L  +   L  S   +   +  +   +E +K        
Sbjct: 675 VRRIEAFTGLKALKYFQQKRKDLDEIDKILDASGSPLKKSLSILKDFDETKKRLREVTMN 734

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            L++   +L+  +I   +  S  +    S+++   +D  + +  + I+ +  ++ +  AS
Sbjct: 735 YLRMKANNLTVEEIGKFSLYSENLDGFASEDMLFFVDLARNRFDNLILFIYSVNNQS-AS 793

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            ++ +++ L    +A +LA++    + GGG GGR  ++Q G  N NK + AI  +  FLK
Sbjct: 794 FVLSISDKLSQSLSAKELAKVITS-VTGGGAGGRDKVSQGGIKNINKLNSAIIALKDFLK 852


>gi|116629092|ref|YP_814264.1| alanyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|238853835|ref|ZP_04644200.1| alanine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|282852129|ref|ZP_06261486.1| alanine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311111122|ref|ZP_07712519.1| alanine--tRNA ligase [Lactobacillus gasseri MV-22]
 gi|122273910|sp|Q045P6|SYA_LACGA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116094674|gb|ABJ59826.1| alanyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|238833530|gb|EEQ25802.1| alanine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|282556693|gb|EFB62298.1| alanine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311066276|gb|EFQ46616.1| alanine--tRNA ligase [Lactobacillus gasseri MV-22]
          Length = 882

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/920 (35%), Positives = 499/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSSQVRQMFLDFFKEHGHMVMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLGLDPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF QF      +    P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I+ +E+++   KY     + V  ++I DH+R+ SF IAD
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIAD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I+
Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E+ERF  TL  GL LLD +++      D+ ++G  AFKL+DT+G P ++  +   
Sbjct: 354 KVIKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTVSGKDAFKLFDTYGFPYELTFEAAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F++ ++ Q+ RAR     L S  ++ +  +L      ++F  Y  L   
Sbjct: 414 DAGLK-VDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEFE-YGTLEEK 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++A  G+   ++FD+TPFYAE GG
Sbjct: 470 H----------------------AKLIDIVVNDKLVDKA-DGEHATLIFDKTPFYAERGG 506

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  +      +      + A      H +     L      +L +D + RR L  
Sbjct: 507 QVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDIILPLEKGQEYILKVDQKRRRGLKH 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I +
Sbjct: 567 NHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIANVEKIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T + + +  +  GA AL G KY D VRVV +        S+  CGGTH  +T +I
Sbjct: 627 EIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K     +V  ++  + 
Sbjct: 682 GMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVTNKISSLE 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           E+ R  Q    + K Q+N            ++  +  ++         +L+ + D  +  
Sbjct: 742 EDLRASQKEAEQLKAQINKAKAGDLFNDVKQVKGLTVIAAQADVEGMNDLRELADNWKSS 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L       KA+++I + +  +     A DL + +A + GGGG GGRP+MAQ+G
Sbjct: 802 DKSDVLVLAA-EVNGKANMVISLNDKAIKAGLKAGDLIKTAAPIFGGGG-GGRPNMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      AIA V   +++
Sbjct: 860 GKNPAGLKDAIAKVLQEVEE 879


>gi|154493963|ref|ZP_02033283.1| hypothetical protein PARMER_03308 [Parabacteroides merdae ATCC
           43184]
 gi|154086223|gb|EDN85268.1| hypothetical protein PARMER_03308 [Parabacteroides merdae ATCC
           43184]
          Length = 875

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/920 (36%), Positives = 485/920 (52%), Gaps = 76/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKDFFASKQHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKQEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D+EA   W+K   L    II    +DNFW M +TGPCGPC
Sbjct: 121 NPDRLYATVFEGSPAEGLSRDDEAAGYWEKF--LPKAHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPEEERAAIPGQDMVNKDHPQVIEIWNLVFMQYNRKADGSLEPLPARVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    V  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIADMAGTAYGKDKQQDVAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKESFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +++G  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKNVISGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   +I  FN  +++Q+ RAR       +      W  LKE  G   F+GYDL 
Sbjct: 419 ILRENGMEA-NIDEFNVEMQKQKDRARNA-----AAIETGDWVVLKE--GGCNFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECDAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D   + + D +++          V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDETVDVIDTKRENNLPVHL---VTKLPKDVTATFTAKINEKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V++ I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEKLVSEKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+   R M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANYPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGN------SIELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L +V ESSI AG+RRIEA+T + A ++     + L+ L +    +  N+   +++
Sbjct: 674 GMIGSLRVVGESSIAAGVRRIEAVTAEAAENYTFMLQDSLRELRAMFN-NVPNLSQTIKK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQ 817
             EE  +L+   +   K K+QL  ++L    +    V  ++    E     +K +   ++
Sbjct: 733 AIEENAELKKQVSDYVKEKVQLLKKELIAKAVERNGVKVIAFR-GEASVDAIKDLAFQIK 791

Query: 818 --KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHM 874
                +  +  + GI   +K +++++++E L+ +  NA  L + +AK++ GG GGG+PH 
Sbjct: 792 GESNTEEKVFFVAGIKDGEKCALMVMLSEPLVAEGLNAGKLVKEAAKLIQGG-GGGQPHF 850

Query: 875 AQSGGPNGNKADQAIAGVAS 894
           A +GG N     +AI  +  
Sbjct: 851 ATAGGKNVAGLGEAIEHILD 870


>gi|325833382|ref|ZP_08165831.1| alanine--tRNA ligase [Eggerthella sp. HGA1]
 gi|325485306|gb|EGC87775.1| alanine--tRNA ligase [Eggerthella sp. HGA1]
          Length = 878

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/928 (34%), Positives = 487/928 (52%), Gaps = 87/928 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--PVYQ 59
              + IR  +L FF++ G +  PSSSLIP +DP+L+ T++GMV FK  F  Q+     Y 
Sbjct: 4   MTSAEIREKYLSFFEEKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAPYI 62

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TTVQKCVR     ND+D +G T RH +FFEMLGNFSFG YFKE     A++  T+   
Sbjct: 63  GTTTVQKCVRT----NDIDIIGTTGRHQSFFEMLGNFSFGEYFKEEMCAWAYEFSTEVLG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY TVY +D+E  ++WKK+ G+  D I R+  +DNFW    TGPCGPCSEI+FDQ
Sbjct: 119 LPAERLYFTVYLDDDETIEIWKKL-GVPDDHISRLGEDDNFWRAGPTGPCGPCSEIYFDQ 177

Query: 180 GECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           GE    G P      + +R++E WNLVF Q++ Q       LPK +IDTGMGLER+A +L
Sbjct: 178 GEDFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGTFVPLPKKNIDTGMGLERIAAIL 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +NY+ D+ + L+   E++TG  Y  +    ++ R++ DH R+ +F+IADGILP+NE
Sbjct: 238 QGVQSNYETDVLRSLVAVGEKLTGTTYGEDAAIDLSLRIMADHSRAVAFMIADGILPSNE 297

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+    LLG  +P +   +  +   MG  YPE+++ + L    + SE+
Sbjct: 298 GRGYVLRRLLRRAVMKGHLLGLDKPFLNDYVDEIVNLMGHVYPEIVENRELTRRVILSEE 357

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERFG  L +G   LD  L+ L   E+L GD AF L+DT+G P+++ +++   RG   +D+
Sbjct: 358 ERFGANLRQGRAFLDEALAELE-GEVLPGDRAFTLHDTYGFPVEVTRELCDERG-IEVDM 415

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKED 472
             F + ++EQR RARA +             +   + E  G T+F+GY            
Sbjct: 416 EGFGRCMDEQRERARAANTKDAEAAWSTYGGVMDEILEAVGPTEFLGYT----------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   + V A+V+ G  V+   +G +  VV D TPFYAE GGQ+GD G
Sbjct: 465 ------------KNDAEARVLALVKDGVQVDVLEAGDEGRVVLDATPFYAEKGGQIGDAG 512

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   + + D ++  +G+  H   VE G L    ++   ID   R ++  NH+ATH+
Sbjct: 513 VLAKDDAIVAVLDTKEPEKGLIAHTVKVESGRLSAGDAVHAAIDVPRRERIRRNHTATHI 572

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +    LRFD TH + +T+ ++  +E   N  I +N PV   
Sbjct: 573 LHWALREVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIVEVERLANQKIMENHPVRAY 632

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             +   A  +G  AL G KY + VRV+ +E       S  LCGGTHVS+T EI  + I S
Sbjct: 633 ETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFVKITS 687

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+S+ A +RRIEA+T   A +++   + +LK  A  L+V   +V  R     +  + LQ 
Sbjct: 688 ETSVGANLRRIEAVTSFDALAYMNRVEAELKEAAESLRVPLFDVSERTASNMKTLKDLQT 747

Query: 773 IHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              + +  +  + ++          A    +   + E D+ +++++ D L+ ++      
Sbjct: 748 KLKRGREAVADDGINALLETAQTSAAGYPVVFGRMPEADAGQMRNMWDVLRARLGQPGAA 807

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG------ 879
           ++   K+ K ++L   T + ++  F+A  + +  +                  G      
Sbjct: 808 VLATEKDGKPTLLAAGTPEAVEAGFDAGAVIKAIS------------------GNIKGGG 849

Query: 880 -----------PNGNKADQAIAGVASFL 896
                       + +  D A+      L
Sbjct: 850 GGKAAMAQAGGKDASGIDAALQAARDML 877


>gi|154148426|ref|YP_001406547.1| alanyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
 gi|205830014|sp|A7I206|SYA_CAMHC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|153804435|gb|ABS51442.1| alanyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 845

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/896 (38%), Positives = 509/896 (56%), Gaps = 59/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64
            IR  FL+FF   GHE++ S+ L+P +D +L+FTN+GMVPFKNIFTG        + T+ 
Sbjct: 2   DIRKEFLDFFASKGHEIIASAPLVP-DDASLLFTNAGMVPFKNIFTGAVPRPTPPIRTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   LD+ +
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKENAIAYAWEFITEILKLDKDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           LY+TV+++D+EAF++W K   ++ ++I R   +DNFW+M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHEKDDEAFEIWAK--HIAKERIYRFGDHDNFWAMGDTGPCGPCSEIFYDQGEEYF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQFE+        LPK SIDTGMGLER+  + +   +N
Sbjct: 179 HGKEDYMGGDGDRFLEIWNLVFMQFERDKAGNLSPLPKPSIDTGMGLERVTAIKEGVFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  +F  LI A E++ G  Y+  +  ++RVI DH+RS +FLIA G+    EGRGYVLRR
Sbjct: 239 YDSSIFMPLIHAVEKLCGKPYKYESGASYRVIADHIRSITFLIAQGVNFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  +C  MG  Y  L++ K  I+E ++ E+ERF  T+ 
Sbjct: 299 ILRRALRHGYLLGLKEPFMYKLVDNVCELMGHHYSYLLEKKETIKEIIKLEEERFLSTIS 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            GL L    L++    ++ +G++AFKLYDT+G PLD+  D+L   G   +D   F++ + 
Sbjct: 359 AGLELFKAQLANT--KDVFSGEIAFKLYDTYGFPLDLTADMLREIGKK-VDEKKFDELMN 415

Query: 424 EQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EQ++RA+A   G G    EK  + +L EK+G  +FIGY+ ++                  
Sbjct: 416 EQKARAKASWKGSGDKIKEKGDFKALLEKFGENKFIGYETMKS----------------- 458

Query: 483 DLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                  S + AI+      V+E  +G    ++ D+TPFYA++GGQ+ DTG   G     
Sbjct: 459 ------QSKILAILNNDFRNVDELKAGNIGWIMLDETPFYAQSGGQIYDTGLINGSNKVT 512

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
                             ++ G       +V     + R + + +HSATHLLH AL  IL
Sbjct: 513 DTQKFFGLNLSEVETSTNLKVG------DIVKCEVDEARIETARHHSATHLLHLALREIL 566

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GS V Q GS +  + LRFD T+ K +TS +L  IE+NVN  I++     T IM+  +AI 
Sbjct: 567 GSGVGQAGSSVDSERLRFDFTYPKSLTSEQLLKIENNVNSQISKGGASKTEIMDINEAIK 626

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA A+   KY D+VRV+++        S   CGGTHV +  EI   YIV ES + AG+R
Sbjct: 627 SGAIAMFSEKYGDKVRVLTLGE------SKEFCGGTHVRNLWEIGSFYIVKESGVSAGVR 680

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+  + A ++      +   + + LK +    +  ++++ +E + L+   +K     
Sbjct: 681 RIEAVCSKAAINYAKNFRSEFSEVQNALKSN--EALSAIKKLKDEIKSLKNEISK---AS 735

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
             + +   +   + F+          ++K+ +D L+ +    I+ +    ++ +  +   
Sbjct: 736 AAKVIDLDEKNGIKFVVSEFDG----DIKTKIDELKNENDK-IVAVFFKVEDGRVQIAAG 790

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           V         A ++ +  AK+LGGGG GGR   A +GG +  K D+A+      +K
Sbjct: 791 VKNAP---LKAGEIVKQIAKILGGGG-GGRDDFATAGGKDMTKIDEAVNFARDLIK 842


>gi|168182642|ref|ZP_02617306.1| alanine--tRNA ligase [Clostridium botulinum Bf]
 gi|237796002|ref|YP_002863554.1| alanyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|182674085|gb|EDT86046.1| alanine--tRNA ligase [Clostridium botulinum Bf]
 gi|229262453|gb|ACQ53486.1| alanine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 879

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/908 (36%), Positives = 513/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FT  + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTRLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-- 179
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+  
Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRGA 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEIKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAILDQVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKRGYIKKVIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +     ++L+GD AFKLYDT+G P+++ ++IL   G   ID 
Sbjct: 359 FDETIDAGMQILNDYIEEVKNNNYKVLSGDKAFKLYDTYGFPVELTEEILEEEG-ISIDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E       G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  IVSE+ 
Sbjct: 635 IEEAKEQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    S  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILNSIKEIKGVKVASAAVKDIDGNALRDLGDKVRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGG GGRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGG-GGRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|152991942|ref|YP_001357663.1| alanyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|205830233|sp|A6Q747|SYA_SULNB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151423803|dbj|BAF71306.1| alanyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 857

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/899 (39%), Positives = 518/899 (57%), Gaps = 55/899 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR TFL++FQ  GH+L+PSS L+P +DPTLMFTN+GMV FKNIFTG+   P     T+ 
Sbjct: 2   DIRKTFLDYFQSKGHKLVPSSPLVP-DDPTLMFTNAGMVQFKNIFTGEAPIPNPPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           Q C+RAGGKHNDLDNVG T RHHT FEMLGNFSF  YFKE AI  AW+ +T E   DL  
Sbjct: 61  QTCLRAGGKHNDLDNVGYTARHHTLFEMLGNFSFADYFKEDAIAYAWEFVTDEKYLDLPV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-E 181
            ++++TV+D D+EA+ +WKK   +S D+I+R    DNFW M +TGPCGPCSEIF+DQG E
Sbjct: 121 EKIWVTVHDSDDEAYDIWKKY--ISEDRIMRFGDKDNFWQMGDTGPCGPCSEIFYDQGAE 178

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                      EG+R++EIWNLVFMQ+E+  K     LPK SIDTGMGLER+  + +   
Sbjct: 179 HFHSEEDVMGGEGDRFLEIWNLVFMQYERDEKGTLNPLPKPSIDTGMGLERVVAIKEGVF 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NNY   LF   ++   ++ G  Y+    N  ++RVI DHLRS SFL+A G+    EGRGY
Sbjct: 239 NNYHSSLFMPFLEKIGELVGKPYDFDAPNSASYRVIADHLRSVSFLLAQGVNFDKEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRA+ +  LLG  EP M  L+  L   MG  Y  L      I+ +++ E+ERF 
Sbjct: 299 VLRRIMRRAIRHGYLLGLREPFMYKLVDTLVDLMGKQYDYLASRAEAIKTSMKMEEERFF 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +T++ G+ L +  L +    ++ NG+VAFKLYDT G PLD+ +D+L  +    +DI +FN
Sbjct: 359 ETIEAGIKLFNEELKNT--QDVFNGEVAFKLYDTFGFPLDLTEDMLREKN-IRLDIDAFN 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +E Q+++++A+  G G   T   +  LKE++   +F+GY+                  
Sbjct: 416 KKMEAQKAQSKANWKGTGDAATTGDFKLLKEEFNTNEFVGYETQE--------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   V++ V A++ +     +A++G K  V+ ++TPFYAE+GGQ+GD G       
Sbjct: 461 --------VTTKVLALLDENFKKTDAING-KGWVLLEKTPFYAESGGQVGDKGKLEIRNE 511

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L+I  +  K       +     G L     +   +D     ++  +HSATHLLH  L  
Sbjct: 512 KLEIRVLDTKKF--LDMNLSEVEGKLSVGDEVKAVVDPSR-VEIEKHHSATHLLHAGLRA 568

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG H++Q GS      LRFD +H K +T+ E++ +E  VND I++ +P  T IM+ ++A
Sbjct: 569 ILGDHIAQAGSLNDDKRLRFDFSHPKAMTAEEIEKVEAWVNDKISRAIPRKTEIMSVDEA 628

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             +GA AL G KY + VRVVS+     G  S  LCGGTHV +T +I L  I  ES + AG
Sbjct: 629 KKAGAMALFGEKYGNEVRVVSM-----GDASIELCGGTHVDNTAQIGLFMITKESGVSAG 683

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEAI G+ A   +    E+L  +   +K    N +  + ++ E+ + L+   A    
Sbjct: 684 VRRIEAICGRAAVEKVKALREELSQIKEEVKNQ--NPIAGIAKLKEQIKTLKSEVASAMS 741

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
               E  + +        + I+ EV + ++KS++D ++ K  +  +ML     +K   +L
Sbjct: 742 ASQKELSTVNVNGV----NVIVEEVQTGDIKSMIDDVKNKYDNVAVMLFQKKGDK--VLL 795

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              +++      A D  +  A ++GGGG GGRP  AQ+GG + ++   A+     +L +
Sbjct: 796 AAGSKNTP--IKAGDWIKAIAPIVGGGG-GGRPDFAQAGGKDASRITTALEEAKVYLSE 851


>gi|88809533|ref|ZP_01125041.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88786752|gb|EAR17911.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 894

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/912 (36%), Positives = 500/912 (54%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL FF++ GH  +PS+SL+P  DPT++ T +GM+PFK IF GQ++      T
Sbjct: 16  TGAEIREAFLSFFEQRGHRRMPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQERPAPCAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD 
Sbjct: 75  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KNLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEEDNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ  +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 191 L-GDEGIDLEDDDRFIEFYNLVFMQSNRDAQGVLTPLANRNIDTGMGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+    G+ Y   +     + +VI DH R+ + LI+DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAADRAGVDYYQLDEKGKTSLKVIGDHSRAVTQLISDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P +  +  A    M SA+P+LI+ + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGIDKPFLQAMGEASIALMQSAHPQLIERREVILAELQREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+   K   ++G+ AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 370 ETLERGEKLLADVLAAKPKQ--ISGEQAFELYDTYGFPLELTQEIAEEHGL-AVDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+QR RA+A ++ +     + I   +      T+F GY+ L                
Sbjct: 427 TAMEQQRQRAKAAAVSIDLTLQDAID-QVAAGLQDTEFRGYEQLEQ-------------- 471

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537
                    SS ++A+V  GE  + A +G  V+VV D TPFY E GGQ+GD G  + D  
Sbjct: 472 ---------SSSIQALVVNGEPAQSASAGDAVQVVLDVTPFYGEGGGQIGDCGTLVADGQ 522

Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                + + +   +   +FVH   VERG L     +   +D   RR+   NH+ATHLL  
Sbjct: 523 AGDGLIVMVESVSRNRSVFVHSGRVERGALSVGDVVHGRVDRACRRRAQANHTATHLLQA 582

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++   + Q GS ++ D LRFD    + +T+ EL  IE  +N  IA    +  + M 
Sbjct: 583 ALKQVVDPGIGQAGSLVSFDRLRFDFHCPRAVTTEELGRIESLINGWIADAHALEVQEMA 642

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A A+GA A+ G KY D V        D    S  LCGGTHV +T EI L  IVSES 
Sbjct: 643 IEQAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVRNTAEIGLFKIVSESG 697

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--- 772
           + AGIRRIEA+ G     +L  +D  +K L    K   G ++ RV  + +E +       
Sbjct: 698 VAAGIRRIEAVAGAAVLPYLNERDAVVKQLGERFKAQPGEIIERVSALQDELKATGKALA 757

Query: 773 --IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
                    +          + +   +   +  VD   L+    +L  ++  G  +++G 
Sbjct: 758 AAQAELAVAKSAALAAQAVAVGNFQLLVERLDGVDGSGLQGAAQSLVDQLGDGGAVVIGG 817

Query: 831 SKE----KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             +     K  ++    +D++  +  A       AK+ GGGG GGRP++AQ+GG +G   
Sbjct: 818 LPDPADQGKVILVAAFGKDVIAAKLQAGKFIGGIAKLCGGGG-GGRPNLAQAGGRDGASL 876

Query: 886 DQAIAGVASFLK 897
           D A+    + L+
Sbjct: 877 DAALTAARAELE 888


>gi|227513125|ref|ZP_03943174.1| alanine--tRNA ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083700|gb|EEI19012.1| alanine--tRNA ligase [Lactobacillus buchneri ATCC 11577]
          Length = 887

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 495/918 (53%), Gaps = 63/918 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S IR  FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 8   MKTLSSSQIRQMFLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  A++LLT  K
Sbjct: 68  PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPK 123

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D+ +LY+TVY +D +A K W +  G+S D II I   DNFW + + GP GP SEIF
Sbjct: 124 WFGWDKDKLYMTVYPKDTDAKKYW-EAVGVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 179

Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G       P   E        R++E+WN+VF QF    +     LP+ +IDTGMGLE
Sbjct: 180 YDRGADFDELAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 239

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++ Q    N++ DLF  +I+ +E  +  K       + V  R+I DH R+ +  I D
Sbjct: 240 RVVSIFQHARTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGD 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYV+RR++RRA+   + LG     +  L P +   + S YPE+++ +  IE
Sbjct: 300 GALPSNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPEVLEQREYIE 359

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +RSE++RF +TL  GL LL  V++         ++G  AFKLYDT+G P ++ ++   
Sbjct: 360 KVIRSEEDRFNETLADGLKLLHDVIADTKAESKNEIDGPTAFKLYDTYGFPYELTKEEAS 419

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + +Q+ RAR    G  S   ++    L +    ++++GYD L   
Sbjct: 420 EVGL-DVDRQGFEVEMHKQKERARNARSGAKSMGVQRDL--LVKVKDDSEYVGYDTLDVK 476

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV+  ++V E+ +   +EV+FD+TPFYAE GG
Sbjct: 477 D----------------------AKLIDIVENEKLVSESKA-DTIEVIFDKTPFYAEMGG 513

Query: 527 QLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   ++      + A      H I  +  L       L +D     ++  
Sbjct: 514 QVADRGVILDENGDKVADVIDVQHAPNGQNIHTIKTQESLVKGQRYHLVVDKLFHSRVEK 573

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  +L  +LG H  Q GS + P  LRFD  H   +T  +L+ +E  VN  I +
Sbjct: 574 NHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMVNKQIFK 633

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T + + +     GA AL   KY D+VRVVS+     G  S   CGGTHV +T +I
Sbjct: 634 EIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVKNTRDI 688

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IVSES + AGIRRIEA+T + A   L  Q  +LK ++  LKV+Q  +V  RVE++ 
Sbjct: 689 GLFKIVSESGVGAGIRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPTRVEQLQ 748

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E + L+      + +L  +          +      ++ II +    +L+ + D  + K
Sbjct: 749 DEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLTDTWRSK 808

Query: 820 IQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G    +KA++++ V+++ + D   A DL +  A  + GG GGGRP+MAQ+G
Sbjct: 809 GLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNIKGG-GGGRPNMAQAG 866

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +  D+A+     +L
Sbjct: 867 GKDPSGLDKAMKAAIEWL 884


>gi|295106657|emb|CBL04200.1| alanyl-tRNA synthetase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 882

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/932 (34%), Positives = 493/932 (52%), Gaps = 91/932 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQ 59
            + + IR  +L +F+  G +  PSSSLIP +DP+L+ T++GMV FK  F  Q+  +  Y 
Sbjct: 4   MSTAEIREKYLSYFEAKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKQLEAPYV 62

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TT QKCVR     ND+D +G T RH +FFEMLGNFSFG YFK+     A++  T+   
Sbjct: 63  GTTTAQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGAYFKKEMCAWAYEFSTEVLG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY TVY +D+E  ++WK + G+  D I R+   DNFW    TGPCGPCSEI++DQ
Sbjct: 119 LPAERLYFTVYLDDDETIEIWKGL-GVPEDHISRLGEEDNFWRAGPTGPCGPCSEIYYDQ 177

Query: 180 GECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           GE    G P      + +R++E WNLVF Q++ Q       LPK +IDTGMGLER+A ++
Sbjct: 178 GEEFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGSFVPLPKKNIDTGMGLERIAAIM 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +NY+ D+ + L+   E++TG  Y  + +  ++ R++ DH RS +F+IADGILP+NE
Sbjct: 238 QGVQSNYETDVLRSLVGVGERLTGAVYGADADADLSLRIMADHSRSVTFMIADGILPSNE 297

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+    LLG  +P +   +  +   MG  YPE+++ + L    + SE+
Sbjct: 298 GRGYVLRRLLRRAVMKGHLLGLDKPFLNEYVDEIVNLMGDVYPEIVENRELARRVILSEE 357

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERFG TL +G   LD  L+ +   E+L GD AF L+DT+G P+++ +++   RG   +D+
Sbjct: 358 ERFGATLRQGRAFLDEALAGIE-GEVLPGDRAFTLHDTYGFPVEVTRELCGERG-IEVDM 415

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKED 472
             F + ++EQR RARA +             +   + E  G T+F+GY            
Sbjct: 416 EGFGRCMDEQRERARAANTKDAEAAWSTYGGVMNEILEAVGPTEFLGYT----------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   + V AIV+ G+ V+   +G++  VV D TPFYAE GGQ+GDTG
Sbjct: 465 ------------KNEADARVLAIVKDGQQVDVLEAGEEGRVVLDATPFYAEKGGQIGDTG 512

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVER----GILRTEMSLVLTIDYQNRRQLSINHS 588
               DG+ + + D ++  +G+  H   V      G ++   ++   ID   R ++  NH+
Sbjct: 513 VLAEDGVVVAVLDTKEPEKGLIAHTVKVMDEPAGGRIQVGDTVHAAIDVPRRERIRRNHT 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  +LG HV Q GS +    LRFD TH + +T+ ++  +E   N+ + +N P
Sbjct: 573 ATHILHWALRQVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIAEVERLANEKVMENHP 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V     +   A  +G  AL G KY + VRV+ +E       S  LCGGTHVS+T EI  +
Sbjct: 633 VRAYETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFV 687

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SE+S+ A +RRIEA+T   A +++   + +LK  A  L+V   +V  R     ++ +
Sbjct: 688 KITSETSVGANLRRIEAVTSFDALAYMNRVEAELKESAEALRVPLFDVSERTAANVKQLK 747

Query: 769 KLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +LQ    + +  +  + +S               +   + E D+ ++++  D L+ ++  
Sbjct: 748 ELQTKMKRNRQTIADDGISALVEGAVEAKGGYPVVFGRLPEADAGQMRNAWDVLRARLGK 807

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG-- 879
               ++   K+ K ++L   T + ++  F+A  + +  +                  G  
Sbjct: 808 PGAAVLATEKDGKPTLLAAGTPEAVEAGFDAGAVIKAIS------------------GNI 849

Query: 880 ---------------PNGNKADQAIAGVASFL 896
                           + +  D A+      L
Sbjct: 850 KGGGGGKAAMAQAGGKDASGIDAALEAAREML 881


>gi|300362251|ref|ZP_07058427.1| alanine--tRNA ligase [Lactobacillus gasseri JV-V03]
 gi|300353242|gb|EFJ69114.1| alanine--tRNA ligase [Lactobacillus gasseri JV-V03]
          Length = 882

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/920 (35%), Positives = 500/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSSQVRQMFLDFFKEHGHMVMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLGLDPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF QF      +    P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I+ +E+++   KY     + V  ++I DH+R+ SF IAD
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIAD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I+
Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E+ERF  TL  GL LLD +++      D+ ++G  AFKL+DT+G P ++  +   
Sbjct: 354 KVIKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTVSGKDAFKLFDTYGFPYELTFEAAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F++ ++ Q+ RAR     L S  ++ +  +L      ++F  Y  L   
Sbjct: 414 DAGLK-VDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEFE-YGTLEEK 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++A  G+   ++FD+TPFYAE GG
Sbjct: 470 H----------------------AKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGG 506

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  +      +      + A      H +     L      +L +D + RR L  
Sbjct: 507 QVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDIILPLEKGQEYILKVDQKRRRGLKH 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I +
Sbjct: 567 NHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIANVEKIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T + + +  +  GA AL G KY D VRVV +        S+  CGGTH  +T +I
Sbjct: 627 EIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K     +V  ++  + 
Sbjct: 682 GMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVTNKISSLE 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           E+ R  Q    + K Q+N            ++ D+  ++         +L+ + D  +  
Sbjct: 742 EDLRASQKEAEQLKAQINKAKAGDLFNDVKQVKDLTVIAAQADVEGMNDLRELADNWKSS 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L       KA+++I + +  +     A DL + +A + GGGG GGRP+MAQ+G
Sbjct: 802 AKSDVLVLAA-EVNGKANMVISLNDKAIKAGLKAGDLIKTAAPIFGGGG-GGRPNMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      AIA V   +++
Sbjct: 860 GKNPAGLKDAIAEVLQEVEE 879


>gi|332044324|gb|EGI80518.1| alanyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 871

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/921 (35%), Positives = 480/921 (52%), Gaps = 75/921 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR+TFL FF+K  H ++PS+ ++  +DPTLMF N+GMVPFK  F G  +P    +
Sbjct: 1   MKSQDIRSTFLNFFEKKKHSIVPSAPMVLKDDPTLMFVNAGMVPFKEYFLGNSEPKNTRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKID 120

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  LY+TV++          D EA+ +WK+   +S D+I++    DNFW M E GPCGPC
Sbjct: 121 KDILYVTVFEGSEDSDKLDMDTEAYDIWKQY--ISEDRILKGNKKDNFWEMGEQGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    + +  + +EIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHVDIRSAEEKAKVNGKDLVNMDHPQVVEIWNLVFMQYNRKANGSLEGLPNKHIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ   +NYD D+F  +I+  E +T  +Y  N    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMVLQNVQSNYDTDVFTPIIREIETITDKEYNKNEKTDIAIRVISDHVRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K 
Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVDVLSDKMGEAFPELKTQKQ 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LIE  ++ E+  F +TLD+GL+LLD ++      E+L G   F+L DT+G P D+   IL
Sbjct: 359 LIENVIKEEETSFLRTLDQGLLLLDRIIETTKGKEVL-GAKVFELKDTYGFPEDLTDLIL 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G    ++  FN  LE+Q+SR R       S      W +L E     +FIGYD L  
Sbjct: 418 REKGYT-YNVEEFNAELEKQKSRGRES-----SALKSDDWTTLVED-AEQEFIGYDALEA 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  +   RK                           V     G+  ++VF+ TPFYAE G
Sbjct: 471 NVKITRYRK---------------------------VTSKKDGEMYQLVFNLTPFYAEGG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G        +      KK   + +H A  +        +    +D + R +   
Sbjct: 504 GQVGDKGYLEDAHGDVVYILDTKKENNVIIHFA--KNLPKHLNETFKAVVDAKQRYRTEC 561

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH  L  +LG+HV Q GS +    LRFD +H   +T+ +L+ +ED VN  I  
Sbjct: 562 NHTATHLLHQGLREVLGTHVEQKGSAVHSKYLRFDFSHFSKVTNEQLQEVEDFVNRRIDG 621

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            L +   R +  + AI  GA AL G KY D VR +          S  LCGGTHV +T +
Sbjct: 622 KLELEENRNVPMDQAIEDGAMALFGEKYGDTVRTIRFG------QSIELCGGTHVKNTSD 675

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    IVSE ++ +GIRRIEAIT    +       +    + S L  +  +    + ++ 
Sbjct: 676 IWHFKIVSEGAVASGIRRIEAITSDAVKDFYAENSKVFSEMKSLLN-NAKDPKEALVKLQ 734

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCH------KIADVNFMSHIISEVDSKELKSVMDALQK 818
            E   L+       L+   ++L         +I  V F++  + ++D+  +K V   L +
Sbjct: 735 TENNDLKKQIESL-LKDKAKNLKAELENNLTEINGVQFLAEKV-DLDASGIKDVAFDLGQ 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           K ++ + ++ G     KA +   ++++L+     NA  + R   K++ GGG GG+P  A 
Sbjct: 793 KHKN-LFLIFGADTGGKALLTCYISKELVAEKGLNAGTVVRELGKLIQGGG-GGQPFFAT 850

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG N     +A+     +++
Sbjct: 851 AGGKNPEGIQEALNEAKKYIQ 871


>gi|312139552|ref|YP_004006888.1| alanine-tRNA ligase alas [Rhodococcus equi 103S]
 gi|311888891|emb|CBH48204.1| alanine-tRNA ligase AlaS [Rhodococcus equi 103S]
          Length = 890

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/921 (34%), Positives = 488/921 (52%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMV FK  F GQ+ P Y   
Sbjct: 1   MQTHEIRRRFLDHFVKAGHTEVPSASLI-FDDPNLLFVNAGMVQFKPFFLGQQTPPYDTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++NVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSVQKCVRTG----DIENVGVTTRHNTFFQMAGNFSFGDYFKRGAIKHAWALLTNSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL++TVY +D+EA  +WK+ +G+  ++I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPERLWVTVYLDDDEARDIWKEEAGIPDERIQRRGMADNYWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFMQ E+       + +    LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GAEGGPEADEDRYLEIWNLVFMQNERGEGTGKDDFEILGPLPKQNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G  Y  +    V  RVI DH R++  LIAD
Sbjct: 235 ERVAFLLQGVDNVYETDLVRPVITKAEELSGRTYGTDPEADVRFRVIADHARTAVMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YPEL      I 
Sbjct: 295 GVNPGNEGRGYVLRRLLRRIIRSAKLLGAEKPSMREFVTVVRDTMSQSYPELATDFDRIV 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F +T+  G  + +           ++  G+ AF L+DT+G P+D+  ++  
Sbjct: 355 GVAVGEETAFLRTIAAGSKMFEAEADEVKAAGRKVFGGNEAFVLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL+ +D   F   + EQR RA+  +       T+   +      GAT+F G++ L   
Sbjct: 415 EAGLS-VDEDGFRSLMAEQRKRAKEDAQARKHAHTDLTVYKEFVDRGATEFTGFNELVS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++  G  V  A +GQ VEV+ D++P YAE+GG
Sbjct: 473 ----------------------EAHVLALISNGVRVPAATAGQDVEVILDRSPLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G    +G+R+++ DVQK A+ ++VH   V  G +     +++ +D + R+  +  
Sbjct: 511 QIADIGTITANGLRVKVNDVQKIAKKVWVHKVSVTEGQITEGDVVLVQVDPEWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD      ++ ++ + IE   N+ +A N
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSESQKQEIEVVTNEAVAAN 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T + + + A   GA AL G  Y D VRVV +    GG  S  LCGGTHV ++ +I 
Sbjct: 631 HAVNTFVTDLDKAKQMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVQTSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RR+EA  G  +  +L  +   L  +AS LKV    V GRVE + E 
Sbjct: 687 PVTLLGESSVGSGVRRVEAFVGLDSYRYLAKERALLAGVASSLKVPSEEVPGRVEALVER 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            +  +      K    +          H+  +V  ++      V   +L+ ++  ++ + 
Sbjct: 747 LKAAEKELEATKAAAVLASAGTFVDKAHRFGEVLLVAEQAPDGVAGNDLRGLVSDIRGRF 806

Query: 821 Q--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                +++L+G + + K   ++  T+   D    A +L       +GG G GG+  MAQ 
Sbjct: 807 GTQPAVVVLLG-NADGKVPFVVATTKAAQDLGIKAGELVSSFGPQIGGRG-GGKADMAQG 864

Query: 878 GGPNGNKADQAIAGVASFLKK 898
            G + +    A+ G  + + +
Sbjct: 865 SGSDVSGIPAALEGARARVAE 885


>gi|149196141|ref|ZP_01873197.1| alanyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149140988|gb|EDM29385.1| alanyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 899

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/946 (34%), Positives = 484/946 (51%), Gaps = 98/946 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           M +   IR ++ +FF+   H L+ S+SL+P + P L+FTN+GM  F  IF G++K  Y  
Sbjct: 1   MLSSKEIRQSYFDFFKSKQHTLVSSASLMP-DSPNLLFTNAGMNQFVPIFLGEKKCPYTP 59

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T  QKC+RAGGKHNDL++VG    HHTFFEMLGN+SF  YFK+ AI+ AW+ LTK  
Sbjct: 60  GRATDTQKCIRAGGKHNDLEDVGMDTYHHTFFEMLGNWSFNDYFKKEAIEYAWEYLTKVC 119

Query: 119 DLDQRRLYITVYDE----------DEEAFKLWKKI---SGLSAD-KIIRITTNDNFWSMA 164
            + + RLY TVY            D+EA+ +W  I    GL     I+     DNFW M 
Sbjct: 120 KIPKERLYATVYQPDKSSGDPADFDQEAYDIWADIFKADGLDPKVHIVNGDKKDNFWMMG 179

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPC+E+  D            + + ++ IEIWNLVF+Q           LP  ++
Sbjct: 180 ETGPCGPCTELHIDLTPAGDTKGSLVNMDTDKCIEIWNLVFIQMNANPDGTFSDLPTKNV 239

Query: 225 DTGMGLERMATV---------LQEKTNNYDIDLFKHLIQASEQVTGMKY----------- 264
           DTGMG ER+A++              +NY+ D+F  +      ++G KY           
Sbjct: 240 DTGMGFERLASIILNTKNFTDFNGIISNYETDIFTPIFDKLTDISGKKYTSTLPEKNELG 299

Query: 265 -------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                  +    +  RVI DH+R+ SF IADGI P N  R YVLRRI+RRA+ Y R +G 
Sbjct: 300 YFVAANDQEMVDIAFRVIADHIRTLSFSIADGIQPGNGDRNYVLRRILRRAVRYGRTIGL 359

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            +P    L+  L  +MG  +PEL + +  ++  ++SE+E F +TLDRG+ L +  +S L 
Sbjct: 360 EKPFFYELVDTLADQMGEIFPELAKGRQHVKTVIKSEEEAFNRTLDRGINLFESEISKLK 419

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
           K + ++   AF+L D  G PLD+ + +   +G   +D+  F + + EQR RARA      
Sbjct: 420 KGDSISAAFAFRLADEQGFPLDLTELMAREQGYK-VDVDGFEKLMNEQRDRARAAQKK-- 476

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
               E I  S  +    T+FIGY+                        N   + V     
Sbjct: 477 ----EIISLSEIKTTEPTEFIGYEE----------------------DNSNEAQV----- 505

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             + V +  +G  + V+FD +  Y E GGQ+GD+G     G   QI D QK  +    + 
Sbjct: 506 --KEVIKMKNG--LAVIFDSSVCYPEMGGQVGDSGTIAAGGKLYQIKDTQKNGDATLHYL 561

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              E         ++++ D + R ++  NH+ATHLLH AL  +LG HV Q GS +  D L
Sbjct: 562 VGDEA--PEEGEKVIVSYDIERRDKIRKNHTATHLLHKALQDLLGEHVEQKGSLVAADYL 619

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H + + + E++ +E  +N+ +  N  V T + N ++A A GA AL G KY+D VR
Sbjct: 620 RFDFSHHQGLKADEIEKLELLINEKVILNSAVETHLKNIDEAKAMGAMALFGEKYDDDVR 679

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           VV +        S  LCGGTHV  TG+I L  I SE S+ AGIRRIEAITG  A  + + 
Sbjct: 680 VVKI-----DDFSLELCGGTHVKRTGDIGLFKITSEGSVSAGIRRIEAITGMDAVKYALN 734

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792
            ++ L+ LA  LK     +  RV+++    + LQ    + K +L   +         +I 
Sbjct: 735 SNKVLQGLAGDLKCKVDTIPERVDKLSSNAKSLQKELDEAKSKLVALEADSLLEKAEEIN 794

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFN 851
            +  +   +   D+  LK +  +L+KKI SGI++    S   K  +   V++DL    F 
Sbjct: 795 GIKVLMLKVDN-DAATLKDMTHSLRKKIGSGIVVFAS-SANGKVVLTSGVSDDLTKQGFK 852

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           A ++  ++AK +GGGG GG P  AQ+GG        A   V   ++
Sbjct: 853 AGEIVSIAAKQVGGGG-GGAPTFAQAGGRMPEAIPSAFKAVKELIE 897


>gi|205830258|sp|A4SGJ6|SYA_PROVI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 885

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/921 (35%), Positives = 492/921 (53%), Gaps = 66/921 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR +FL+FF    H ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y   
Sbjct: 1   MKSSDIRQSFLDFFVGKSHAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRSYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+KE AI  AW+LLT  + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAITWAWELLTVVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +D+E+F++W++ + +  D I+R    DNFW M ETGPCGPCSEI  D   
Sbjct: 121 EERLYATVYHDDDESFRIWEEKTSIRPDHILRFGDKDNFWEMGETGPCGPCSEIHIDLTP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G    + +  + IE+WNLVF+Q+++Q       LP+  +DTGMG ER+  V+Q K+
Sbjct: 181 D-GSGRALVNADDPQAIELWNLVFIQYDRQVDGRLEPLPQRHVDTGMGFERVCAVMQGKS 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F+ L     ++TG++Y         +  RVI DH R+ SF ++DG +P+NEGR
Sbjct: 240 SNYDTDVFRPLFDTITELTGVEYGASMHDPQDIAMRVIADHARTLSFALSDGAMPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ YA+ LGY +P++  L+  +   MG  +PEL   +  +   +++E+E 
Sbjct: 300 GYVLRRILRRALRYAKDLGYNKPILHRLVATVADSMGDVFPELRDRQDAVARIVKAEEES 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ + +G++  +  +    L G+ AFKLYDT+G P D+ + +  + GL  +D 
Sbjct: 360 FLVTLDRGIEIFNGLVGKVRGEGSSTLEGEDAFKLYDTYGFPFDLTRLMASSAGL-QVDG 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + ++EQ++RAR        G  E+  +       AT+F GYD L            
Sbjct: 419 EGFERCMQEQKTRARQDRREKQRGGAEEGSWEWFSDLHATEFTGYDGLEAD--------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I +  +          + +V D+TPFYAE+GGQ GD G   
Sbjct: 470 --------------ASIIGISRSKK---------NLLLVLDRTPFYAESGGQTGDRGWIE 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM----------SLVLTIDYQNRRQLSI 585
               RL++TD QK  +            +  +E            +  ++D + R+    
Sbjct: 507 TGEYRLEVTDTQKDGDSFVHVVTRAFDNVRDSEADPADIAVGPGRVHASVDRKLRQATER 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH  L   LG+HV Q GS + P+ LRFD +H   +T  E+ ++E  VND I Q
Sbjct: 567 NHTATHLLHAVLRHTLGAHVQQKGSLVNPERLRFDFSHFSKLTPEEIDAVESAVNDCIRQ 626

Query: 646 NLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
               +    +  +DAI  GA A  G KY D VRVV +        S  LCGGTHV + G+
Sbjct: 627 AEATLKHADVPYDDAITKGALAFFGDKYADLVRVVEIPG-----ISVELCGGTHVDNVGQ 681

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-GRVEEI 763
           I L  IV ESS+ AG+RRIEA+TG+ A   +  +  +L  +   LK+        +V  I
Sbjct: 682 IGLFKIVGESSVAAGVRRIEALTGRAAEELMWNEYRELHDVRQLLKMKAEEPPAEKVAAI 741

Query: 764 WEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE R L+   A+ K      +L  +  +   +     ++ ++   D++ L+     L++
Sbjct: 742 LEERRALEKQLAELKAEVLLVKLQGDASALEDVCGCRIVARVVDGADAEGLRYAAQMLRQ 801

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +      +L   S E K S+    ++  +     +A  L R +A  + GGG GG+   A 
Sbjct: 802 QFPLSAGLLCS-SAEGKVSLAAFASDRAVKELGIDAGKLIRQAAAAVKGGG-GGKAEFAT 859

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG N    + A       ++
Sbjct: 860 AGGKNPEGMEDACRVFREAVR 880


>gi|134098622|ref|YP_001104283.1| alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|291009600|ref|ZP_06567573.1| alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|205830197|sp|A4FBD3|SYA_SACEN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|133911245|emb|CAM01358.1| putative alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 890

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/922 (34%), Positives = 494/922 (53%), Gaps = 62/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   F E F+K GH ++PS+SLI  +DPTL+F N+GMV FK  F G     Y   
Sbjct: 1   MQTHEINQRFTEHFRKAGHTVVPSASLI-LDDPTLLFVNAGMVQFKPYFLGDAPAPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR G    D+D VG+T RH+TFF+M GNFSFG YFKE A++ AW LLT      
Sbjct: 60  TSIQKCVRTG----DIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAMEHAWGLLTSSQADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL++TV+++DEEA  LW+K++G+ A++I      DN+W M   GP GPCSEI+
Sbjct: 116 GYGFDPERLWVTVFEKDEEAAALWQKVTGIPAERIQVRDAKDNYWDMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ  +      +       LP  +IDTGMG+
Sbjct: 176 YDRGPKY-GREGGPVVDEDRYIEIWNLVFMQDIRGELPPKEGHPPIGELPTKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G  Y     + V  RVI DH RS   L+ D
Sbjct: 235 ERVACLLQGVENVYETDLVRPVIAKAEELSGRSYGANHEDDVRFRVIADHARSGVMLVGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NE RGYVLRR++RR +   RLLG  EP++      +   M  +YPEL+     I+
Sbjct: 295 GVTPGNEARGYVLRRLLRRIIRSTRLLGVHEPVLGEFAAVVRDAMAPSYPELVTEFDRID 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +R+E++ F  TL  G  + D  ++         L G  AF+L+DT+G P+D+  ++  
Sbjct: 355 SVMRNEEDAFLSTLTAGSKIFDLAVADTKKAGGTQLAGAKAFQLHDTYGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + + EQR RA+  +    SG  +   + +L +++G T+F+GY  L+ 
Sbjct: 415 EQGLS-VDEHGFRELMSEQRRRAKEDAKSRKSGHGDLSTYRTLLDQHGTTEFLGYTDLQ- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  ++  G   + A +G +VE++ D+TPFYAE G
Sbjct: 473 ----------------------AQSRVLGLLVDGVPAKSAAAGTEVELILDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ DTG   G G+ +++ DVQ+   G+FVH A V  G L  + SL   +D + R  +  
Sbjct: 511 GQIADTGRLTGPGVEVEVHDVQRAVPGLFVHRAKVTAGELGVDTSLEAAVDSKRRHAIER 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHL+H A+ +  G   +Q GS  +P  +RFD T    ++ A L  +E+ VN  +  
Sbjct: 571 SHSATHLVHAAVRSAYGKRAAQAGSLNSPGRMRFDFTAPAAVSGAVLGGVEEEVNSYLQN 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           ++ V +     + A+  GA AL G KY D+VRVV +     G +S  LCGGTHV   G++
Sbjct: 631 DVEVQSYTTTMDRAMELGAVALFGEKYGDQVRVVDM-----GDYSRELCGGTHVGRIGQL 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            ++ +V++SS+ +G+ R+EA+ G  A  H+  +   +  LA   KV    +  R+  +  
Sbjct: 686 GVVKLVADSSVGSGVHRVEALVGMDAMRHISKEHLLVSRLAEQFKVPAEELPERIAGVVS 745

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKK 819
             R  +    + ++   ++           +  V  ++  +   VD   L+++   ++ +
Sbjct: 746 RLRSAEKELEQLRVAQVLQSAGELAGKGTDVHGVTLVAEQVPDGVDGGALRALAGEVRGR 805

Query: 820 IQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           + S   ++ L     + K S ++ V     D    A  L    A  + GG GGG+P MAQ
Sbjct: 806 LGSRPAVVALFSADGD-KVSFVVGVNTPAQDLGLKAGKLVPSFAAEV-GGRGGGKPDMAQ 863

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            GG N      AIA + + L +
Sbjct: 864 GGGSNPAGITAAIAALRTGLDQ 885


>gi|145220398|ref|YP_001131107.1| alanyl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265]
 gi|145206562|gb|ABP37605.1| alanyl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 893

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/921 (35%), Positives = 492/921 (53%), Gaps = 66/921 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR +FL+FF    H ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y   
Sbjct: 9   MKSSDIRQSFLDFFVGKSHAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRSYSRA 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+KE AI  AW+LLT  + L 
Sbjct: 69  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAITWAWELLTVVWKLP 128

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +D+E+F++W++ + +  D I+R    DNFW M ETGPCGPCSEI  D   
Sbjct: 129 EERLYATVYHDDDESFRIWEEKTSIRPDHILRFGDKDNFWEMGETGPCGPCSEIHIDLTP 188

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G    + +  + IE+WNLVF+Q+++Q       LP+  +DTGMG ER+  V+Q K+
Sbjct: 189 D-GSGRALVNADDPQAIELWNLVFIQYDRQVDGRLEPLPQRHVDTGMGFERVCAVMQGKS 247

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F+ L     ++TG++Y         +  RVI DH R+ SF ++DG +P+NEGR
Sbjct: 248 SNYDTDVFRPLFDTITELTGVEYGASMHDPQDIAMRVIADHARTLSFALSDGAMPSNEGR 307

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ YA+ LGY +P++  L+  +   MG  +PEL   +  +   +++E+E 
Sbjct: 308 GYVLRRILRRALRYAKDLGYNKPILHRLVATVADSMGDVFPELRDRQDAVARIVKAEEES 367

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ + +G++  +  +    L G+ AFKLYDT+G P D+ + +  + GL  +D 
Sbjct: 368 FLVTLDRGIEIFNGLVGKVRGEGSSTLEGEDAFKLYDTYGFPFDLTRLMASSAGL-QVDG 426

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + ++EQ++RAR        G  E+  +       AT+F GYD L            
Sbjct: 427 EGFERCMQEQKTRARQDRREKQRGGAEEGSWEWFSDLHATEFTGYDGLEAD--------- 477

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I +  +          + +V D+TPFYAE+GGQ GD G   
Sbjct: 478 --------------ASIIGISRSKK---------NLLLVLDRTPFYAESGGQTGDRGWIE 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM----------SLVLTIDYQNRRQLSI 585
               RL++TD QK  +            +  +E            +  ++D + R+    
Sbjct: 515 TGEYRLEVTDTQKDGDSFVHVVTRAFDNVRDSEADPADIAVGPGRVHASVDRKLRQATER 574

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH  L   LG+HV Q GS + P+ LRFD +H   +T  E+ ++E  VND I Q
Sbjct: 575 NHTATHLLHAVLRHTLGAHVQQKGSLVNPERLRFDFSHFSKLTPEEIDAVESAVNDCIRQ 634

Query: 646 NLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
               +    +  +DAI  GA A  G KY D VRVV +        S  LCGGTHV + G+
Sbjct: 635 AEATLKHADVPYDDAITKGALAFFGDKYADLVRVVEIPG-----ISVELCGGTHVDNVGQ 689

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-GRVEEI 763
           I L  IV ESS+ AG+RRIEA+TG+ A   +  +  +L  +   LK+        +V  I
Sbjct: 690 IGLFKIVGESSVAAGVRRIEALTGRAAEELMWNEYRELHDVRQLLKMKAEEPPAEKVAAI 749

Query: 764 WEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE R L+   A+ K      +L  +  +   +     ++ ++   D++ L+     L++
Sbjct: 750 LEERRALEKQLAELKAEVLLVKLQGDASALEDVCGCRIVARVVDGADAEGLRYAAQMLRQ 809

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +      +L   S E K S+    ++  +     +A  L R +A  + GGG GG+   A 
Sbjct: 810 QFPLSAGLLCS-SAEGKVSLAAFASDRAVKELGIDAGKLIRQAAAAVKGGG-GGKAEFAT 867

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG N    + A       ++
Sbjct: 868 AGGKNPEGMEDACRVFREAVR 888


>gi|317968219|ref|ZP_07969609.1| alanyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 878

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/907 (37%), Positives = 498/907 (54%), Gaps = 53/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+F+++ GH+ + S+SL+P  DPT++ T +GM+PFK +F GQ+       T
Sbjct: 7   TGAEIRAAFLDFYEQRGHKPMASASLVPE-DPTVLLTIAGMLPFKPVFLGQQPRPSARAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T  F +  
Sbjct: 66  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTTVFGISP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 122 KNLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 182 L-GDEGIDLEDDSRFIEFYNLVFMQYNRDAEGSLTPLENRNIDTGMGLERMAQILQKVPN 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI+ +  + G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 241 NYETDLIYPLIETAAGLAGVDYRQLDPKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P +  +  A    M SAYP+L++ + +I   L+ E+ RF 
Sbjct: 301 ILRRLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLLERQEVILSELKREEARFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+   K   ++G+ AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 361 ETLERGEKLLADVLAAKPKQ--ISGEQAFELYDTYGFPLELTQEIAEEHGL-AVDLDGFE 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+E QR RA+A ++ +     + I   +     AT+F GY+LL                
Sbjct: 418 QAMEAQRQRAKAAAVSIDLTLQDAID-QMAADLEATRFRGYELLDH-------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    SS V+A+V  GE  E A +G  V++V D TPFY E GGQ+GD G   G   
Sbjct: 463 ---------SSSVQALVVNGEPAERAEAGDSVQLVLDTTPFYGEGGGQVGDRGVLSG-DG 512

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + +   +   +FVH   VERG +     +   +D   RR+   NH+ATHLL  AL  
Sbjct: 513 LIVVIEAVSRNRSVFVHSGRVERGSVSVGDVVHGQVDRACRRRAQANHTATHLLQSALKQ 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD    + IT+AEL+ IE  +N  IA+   +  + M  E A
Sbjct: 573 VVDPGIGQAGSLVDFDRLRFDFHCPRAITAAELEQIETLINGWIAEAHSLEVQEMTIEKA 632

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY+D V        D    S  LCGGTHVS+T EI L  IVSES + AG
Sbjct: 633 KAAGAVAMFGEKYSDVV-----RVVDVPGVSMELCGGTHVSNTAEIGLFKIVSESGVAAG 687

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G    ++L  +D  +K L    K     +V RV  +  E +  Q      + 
Sbjct: 688 IRRIEAVAGAAVLAYLNERDAVVKQLGERFKAQPAEIVERVLTLQSELKASQKALTSARE 747

Query: 780 Q-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           +               I D   +   +  V+   L+S    L  ++  G  +++G   + 
Sbjct: 748 ELALAKSAALASQAEAIGDFQVLISRLDGVEGGGLQSAAQGLVDQLGEGAAVVLGGLPDP 807

Query: 834 ---KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K  ++    + ++ +   A       AK  GGGG GGRP++AQ+GG +G   D A+
Sbjct: 808 SDLGKVILVAAFGKGVIAKGQQAGKFIGAVAKACGGGG-GGRPNLAQAGGRDGAALDAAL 866

Query: 890 AGVASFL 896
                 L
Sbjct: 867 EQAKGEL 873


>gi|150015988|ref|YP_001308242.1| alanyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|205830028|sp|A6LSF6|SYA_CLOB8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149902453|gb|ABR33286.1| alanyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 879

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/908 (35%), Positives = 519/908 (57%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF+   H  + S SL+P ND +L+  N+GM P K  FTG ++P  + +
Sbjct: 4   MKTNDLREAYLKFFESKDHLRMDSFSLVPKNDKSLLLINAGMAPLKPYFTGLQEPPKRRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG T+RH TFFEMLGNFSF  YFK+  I  AW+ +T+  +L 
Sbjct: 64  TTCQKCIRTG----DIENVGITSRHGTFFEMLGNFSFADYFKKEIIPWAWEFITEVLELP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+T+Y +D+EA++ W  ++ +    I R+   DNFW     GPCGPC+EI F++ E
Sbjct: 120 KDRLYVTIYLDDDEAYEYWTTLTDVDKTHIFRLGKEDNFWEHG-AGPCGPCTEIHFNRSE 178

Query: 182 CIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            IP       +  + ++ IE WNLVF QF+   K     L   +IDTGMGLER+AT++QE
Sbjct: 179 EIPTNADEFVKLADEDKIIEFWNLVFTQFDGDGKGNYEKLANTNIDTGMGLERLATIMQE 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K + ++ID  ++++    ++  +KY       ++ R+I DH+RS +F+I+D ++P+NEGR
Sbjct: 239 KNSIFEIDTLENILSEVAKLANVKYGENQKTDISLRLITDHIRSITFMISDDVMPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG  E  + +L   +  +   AYPEL   K  I++ ++ E+++
Sbjct: 299 GYVLRRLLRRAARHGKTLGIKEAFLCNLCDTVIRDSSEAYPELNSKKEYIKKVIKIEEDK 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD G+ +L+G +S L    +++L+G   FKLYDT G P+++ ++IL   GL+ +D 
Sbjct: 359 FRETLDSGMEILNGFISELKAKNEKVLSGVDGFKLYDTFGFPMELTKEILEDEGLS-LDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F++ ++ QR RAR+         T+     +      T F GYD              
Sbjct: 418 DAFHEEMKVQRERARSARKVSNYMGTDVKTLDIIPAEVETVFDGYDN------------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                     + +++ VK +++  +  +    G K  +V D TP YAE GGQ+GDTG   
Sbjct: 465 ----------DTLNAEVKVLIEGEDFTDAITEGNKAIIVTDVTPLYAEMGGQIGDTGVIF 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG +  + D +K   G  VH   V  G L+   ++ + +D   R  +  NH+ATHLL  
Sbjct: 515 NDGFKANVLDTKKNIGGKIVHFVEVVSGELKVGDTVTIEVDKVRRENIKKNHTATHLLDK 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL+ +LGSHV Q GS ++ D LRFD +H + +T  E+  +ED VN+ I    PVVT +M+
Sbjct: 575 ALTEVLGSHVHQAGSYVSNDRLRFDFSHFEAMTEEEINKVEDLVNEAITSVTPVVTEVMD 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A  SGA  +   KY D+VRVVS      G +S  LCGGTH+ +TG+I L  I+SES 
Sbjct: 635 LQEAKNSGAIGIFDDKYADKVRVVS-----AGEYSKELCGGTHIDNTGKIGLFKIISESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG RRIEA+ G+ A   +  + + LK +++ LK S+  ++ ++++  +E ++      
Sbjct: 690 IAAGTRRIEAVIGKEAYKIVNEKKDLLKEISTKLKCSEKELLAKLDQQVKELKEKDKEIT 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +     +     S   + D+N +S+ + +VDS  L+ V + ++ K  + I++L+  
Sbjct: 750 ALKSKFASMGIDDIVSSSRNVKDINVISYELKDVDSDTLRDVCEKVRDKAPNSIVLLMSA 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +   K  +  + T+D + +  +   L +  + +LGGGG GGRP MAQ+GG    K  +AI
Sbjct: 810 NA-GKVIICAMATKDAVAKGAHCGKLIKEISSMLGGGG-GGRPDMAQAGGKMPEKIQEAI 867

Query: 890 AGVASFLK 897
                 ++
Sbjct: 868 EESYKIVE 875


>gi|325672564|ref|ZP_08152260.1| alanine--tRNA ligase [Rhodococcus equi ATCC 33707]
 gi|325556441|gb|EGD26107.1| alanine--tRNA ligase [Rhodococcus equi ATCC 33707]
          Length = 890

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/921 (34%), Positives = 488/921 (52%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMV FK  F GQ+ P Y   
Sbjct: 1   MQTHEIRRRFLDHFVKAGHTEVPSASLI-FDDPNLLFVNAGMVQFKPFFLGQQTPPYDTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++NVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSVQKCVRTG----DIENVGVTTRHNTFFQMAGNFSFGDYFKRGAIKHAWALLTNSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL++TVY +D+EA  +WK+ +G+  ++I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPERLWVTVYLDDDEARDIWKEEAGIPDERIQRRGMADNYWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFMQ E+       + +    LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GAEGGPEADEDRYLEIWNLVFMQNERGEGTGKDDFEILGPLPKQNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G  Y  +    V  RVI DH R++  LIAD
Sbjct: 235 ERVAFLLQGVDNVYETDLVRPVITKAEELSGRTYGTDPEADVRFRVIADHARTAVMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YPEL      I 
Sbjct: 295 GVNPGNEGRGYVLRRLLRRIIRSAKLLGAEKPSMREFVTVVRDTMSQSYPELATDFDRIV 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F +T+  G  + +           ++  G+ AF L+DT+G P+D+  ++  
Sbjct: 355 GVAVGEETAFLRTIAAGSKMFEAEADEVKAAGRKVFGGNEAFVLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL+ +D   F   + EQR RA+  +       T+   +      GAT+F G++ L   
Sbjct: 415 EAGLS-VDEDGFRSLMAEQRKRAKEDAQARKHAHTDLTVYKEFVDRGATEFTGFNELVS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++  G  V  A +GQ VEV+ D++P YAE+GG
Sbjct: 473 ----------------------EAHVLALISNGVRVPTATAGQDVEVILDRSPLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G    +G+R+++ DVQK A+ ++VH   V  G +     +++ +D + R+  +  
Sbjct: 511 QIADIGTITANGLRVKVNDVQKIAKKVWVHKVSVTEGQITEGDVVLVQVDPEWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD      ++ ++ + IE   N+ +A N
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSESQKQEIEVVTNEAVAAN 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T + + + A   GA AL G  Y D VRVV +    GG  S  LCGGTHV ++ +I 
Sbjct: 631 HAVNTFVTDLDKAKQMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVQTSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RR+EA  G  +  +L  +   L  +AS LKV    V GRVE + E 
Sbjct: 687 PVTLLGESSVGSGVRRVEAFVGLDSYRYLAKERALLAGVASSLKVPSEEVPGRVEALVER 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            +  +      K    +          H+  +V  ++      V   +L+ ++  ++ + 
Sbjct: 747 LKAAEKELEATKAAAVLASAGTFVDKAHRFGEVLLVAEQAPDGVAGNDLRGLVSDIRGRF 806

Query: 821 Q--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                +++L+G + + K   ++  T+   D    A +L       +GG G GG+  MAQ 
Sbjct: 807 GTQPAVVVLLG-NADGKVPFVVATTKAAQDLGIKAGELVSSFGPQIGGRG-GGKADMAQG 864

Query: 878 GGPNGNKADQAIAGVASFLKK 898
            G + +    A+ GV   + +
Sbjct: 865 SGSDVSGIPAALEGVRGRVAE 885


>gi|227510197|ref|ZP_03940246.1| alanine--tRNA ligase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190402|gb|EEI70469.1| alanine--tRNA ligase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 887

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 496/918 (54%), Gaps = 63/918 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S IR  FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 8   MKTLSSSQIRQMFLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  A++LLT  K
Sbjct: 68  PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPK 123

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D+ +LY+TVY +D +A K W +  G+S D II I   DNFW + + GP GP SEIF
Sbjct: 124 WFGWDKDKLYMTVYPKDTDAKKYW-EAVGVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 179

Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G       P   E        R++E+WN+VF QF    +     LP+ +IDTGMGLE
Sbjct: 180 YDRGADFDELAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 239

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++ Q    N++ DLF  +I+ +E  +  K       + V  R+I DH R+ +  I D
Sbjct: 240 RVVSIFQHAKTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGD 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYV+RR++RRA+   + LG     +  L P +   + S YPE+++ +  IE
Sbjct: 300 GALPSNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPEVLEQRDYIE 359

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +RSE++RF +TL  GL LL  V++         ++G  AFKLYDT+G P ++ ++   
Sbjct: 360 KVIRSEEDRFNETLADGLKLLHDVIADTKAESKNEIDGPTAFKLYDTYGFPYELTKEEAS 419

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL G+D   F   + +Q+ RAR    G  S   ++    L +    ++++GYD L   
Sbjct: 420 EVGL-GVDKQGFEVEMHKQKERARNARSGAKSMGVQRDL--LVKVKDDSEYVGYDTLDVK 476

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV+  ++V E+ +   +EV+FD+TPFYAE GG
Sbjct: 477 D----------------------AKLIDIVENEKLVSESKA-DTIEVIFDKTPFYAEMGG 513

Query: 527 QLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   ++      + A      H I  +  L       L +D     ++  
Sbjct: 514 QVADRGVILDENGDKVADVIDVQHAPNGQNIHTIKTQESLVKGQRYHLVVDKLFHSRVEK 573

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  +L  +LG H  Q GS + P  LRFD  H   +T  +L+ +E  VN  I +
Sbjct: 574 NHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMVNKQIFK 633

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T + + +     GA AL   KY D+VRVVS+     G  S   CGGTHV +T +I
Sbjct: 634 EIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVKNTRDI 688

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IVSES + AG+RRIEA+T + A   L  Q  +LK ++  LKV+Q  +V  RVE++ 
Sbjct: 689 GLFKIVSESGVGAGVRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPTRVEQLQ 748

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E + L+      + +L  +          +      ++ II +    +L+ + D  + K
Sbjct: 749 DEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLTDTWRSK 808

Query: 820 IQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G    +KA++++ V+++ + D   A DL +  A  + GG GGGRP+MAQ+G
Sbjct: 809 RLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNIKGG-GGGRPNMAQAG 866

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +  D+A+     +L
Sbjct: 867 GKDPSGLDKAMKAAVEWL 884


>gi|254383594|ref|ZP_04998944.1| alanyl-tRNA synthetase [Streptomyces sp. Mg1]
 gi|194342489|gb|EDX23455.1| alanyl-tRNA synthetase [Streptomyces sp. Mg1]
          Length = 889

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/906 (35%), Positives = 490/906 (54%), Gaps = 62/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP     
Sbjct: 1   MESAEIRRRWLSFFEERGHAVVPSASLIA-DDPTLLLVNAGMVPFKPYFLGETKPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY +D+EA  +W++  G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYLDDDEAETIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+     +   P        +IDTG+GL
Sbjct: 176 YDRGPDF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG+ Y       V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVLYGAAQGTDVSMRVVADHIRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RL+G T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVQDLVDVVINTMGQQYPELVTDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K +  G  +LD  +S        +L+GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKAVKGGTNILDTAVSETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  GAT+F GY     
Sbjct: 415 EQGLS-VDEPGFRRLMQEQRDRAKADAKAKKTGHADMSAYREIADGSGATEFTGY----- 468

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T    S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 469 ------------------ATTQGESTIVGLLVNGVSAPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  + + DVQ+   G+ VH   V+ G +    S    ID   RR ++
Sbjct: 511 GQLADQGRIKLDSGAVIVVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVSRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +ND+++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINDVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   IM+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVTAEIMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIASML 745

Query: 765 EEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQK 818
            + +  +    K + +              D+  ++ ++        + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIRGVALVVGSVPDGTGADDLRKLVLDVRG 805

Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ     ++ L   + ++  +V+            A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIQGDRPAVVALFTTANDRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVA 864

Query: 876 QSGGPN 881
           Q GG N
Sbjct: 865 QGGGQN 870


>gi|254391331|ref|ZP_05006535.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|197705022|gb|EDY50834.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 869

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/891 (35%), Positives = 490/891 (54%), Gaps = 61/891 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP +  
Sbjct: 1   MMESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLINAGMVPFKPYFLGETKPPFPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
            T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+L+W+LLT     
Sbjct: 60  ATSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLSWELLTTPVED 115

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + L+  +L+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI
Sbjct: 116 GGYGLEPEKLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEI 175

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMG 229
            +D+G         +  +  RY+EIWNLVFMQ+E+   + +   P        +IDTG+G
Sbjct: 176 NYDRGPAFGAEGGPAVNDE-RYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
           LER+A +LQ   N Y+ D  + ++  + ++TG++Y  +  + V+ RVI DH+R+S  LI 
Sbjct: 235 LERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHASDVSLRVIADHIRTSVMLIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  I
Sbjct: 295 DGVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVAALVDVVVRTMGEQYPELVTDRTRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E    +E+ RF KTL+ G  +L+G +  +      +L GD AF L+DT G P+D+  +I 
Sbjct: 355 EAVALAEEARFLKTLNAGTNVLEGAITEAKATGGTVLAGDKAFLLHDTWGFPIDLTLEIA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464
             +GL+ +D   F + ++EQR++A+A +    +G  +   +  + +  GAT+F GY    
Sbjct: 415 AEQGLS-VDEDGFRRLMKEQRAKAKADAKAKKTGHADLSAYREVADGSGATEFTGYAATE 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
           G                        S +  ++  G     A  G +VEVV D+TPFYAE 
Sbjct: 474 G-----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEG 510

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G   +  G  +++ DVQ+   G+ VH   V+ G +    S    ID + RR +
Sbjct: 511 GGQLADQGRIKLDSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAI 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  HSATHL H AL   LG   +Q GS  +P   RFD      +  + L  +E  +N+++
Sbjct: 571 ARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGAPSAVPGSVLTDVEQRINEVL 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           ++ L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T 
Sbjct: 631 SRELDVQAEVMSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTA 685

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  ++  +
Sbjct: 686 QLGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKISGM 745

Query: 764 WEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQ 817
             + +  +    K + +               I  V  +S  + +   + +L+ ++  ++
Sbjct: 746 LAKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIHGVALVSGRVEDGTSADDLRRLVLDVR 805

Query: 818 KKIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            +I      ++ L  ++  +  +V+            A DL R +AK LGG
Sbjct: 806 GRIPGDRPAVVALFTVANGRPLTVIATNEAGRERGLRAGDLVRTAAKTLGG 856


>gi|189485045|ref|YP_001955986.1| alanyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|205830280|sp|B1GZ43|SYA_UNCTG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170287004|dbj|BAG13525.1| alanyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 877

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/904 (37%), Positives = 501/904 (55%), Gaps = 44/904 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FL FF+ +G  ++PS SLIP  D TL+FT++GMV FK  F GQ K  +   T+
Sbjct: 5   SSKIRAEFLGFFKNSGCAVVPSDSLIPAGDKTLLFTSAGMVQFKQHFLGQSKDSFTRATS 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC R      D+D VG T RH TFFEMLGNFSFG YFK+ A   AW+ LTK   L + 
Sbjct: 65  CQKCFRTS----DIDQVGTTARHLTFFEMLGNFSFGDYFKKEAAAWAWEFLTKNMSLPKD 120

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LYIT+Y +D+E   +WK I+   A+KII++    NFW+M ETGPCGPCSEI  D G+  
Sbjct: 121 KLYITIYKDDDEVAGIWKNIA--PANKIIKMDEKTNFWNMGETGPCGPCSEILIDLGQET 178

Query: 184 PGGLPGSSEEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P    E   +RY+EIWNLVF QF++Q       LP+ +IDTGMGLER++  +  + 
Sbjct: 179 GCGSPACCPECNCDRYLEIWNLVFTQFDKQPDGSLKNLPRKNIDTGMGLERLSATVNGRK 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           N +D DLF  +++ + ++  +K EG+NI   R+I DH R+ +FLI+DGILP+NEGRGYVL
Sbjct: 239 NVFDTDLFMPVMENAAEILKIKNEGSNISKLRMIADHSRAITFLISDGILPSNEGRGYVL 298

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+   +  GY +P +  L+  +   M  AYPEL      I   +++E+E+F +T
Sbjct: 299 RRILRRALRQGKFYGYNKPYINELVSDVLKIMEGAYPELSSKLSNIRSIVKTEEEKFLET 358

Query: 362 LDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L+ G  +L  +++        I++G   FKLYDT+G P D+ +++    GL  ID   F 
Sbjct: 359 LESGSEILSSLINSYKSKDINIISGKDVFKLYDTYGFPHDLTKEMAFENGLE-IDEDKFK 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
              ++ + ++R    G G       +  L++K G T F GYD                  
Sbjct: 418 FEQKKAQEKSRVAWCGSGERDI-TFYSILRKKTGDTVFTGYDNYAS-------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V A+++ G  + E  +G   E++   + FYA++GGQ  D G    +  
Sbjct: 463 ---------ESRVLALIKDGSEISELKTGDNGEIILSHSSFYAQSGGQSDDKGKIANNSF 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +  + K A  +FVH   V +G+++   ++   ID + R+Q++ +H+A HLLH AL  
Sbjct: 514 ESIVEYIFKPAGNLFVHKVKVLKGLIKINDAVSTIIDIERRKQIARHHTAAHLLHKALRE 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
             G H++Q GS +  D  RFD TH   +   +L  IE  VN II  N  V    M    A
Sbjct: 574 AFGGHITQAGSLVARDYFRFDFTHFSALKKDDLIKIEKRVNSIIRLNSEVCIETMAIAKA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-GVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
             +GA AL G KY D VR V ++ E G G +S  LCGGTHVS TG+I +  I+SESS  A
Sbjct: 634 RNAGAMALFGEKYGDEVRTVLIKNESGDGNYSMELCGGTHVSRTGDIGIFKIISESSAAA 693

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+ G  A ++++ ++  +   +  L  S+  +V +  +   +Y+KL+      K
Sbjct: 694 GVRRIEAVAGIAAENYILDEEAVIIKTSKILNASKEELVNKAHKYTSDYKKLENEFKSLK 753

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             L   ++        KI  +NF+S I  + D K L+++ D L++K++S  ++L+    E
Sbjct: 754 SSLISGEIDSYAKEVKKINGINFLSVIADKADIKALRTISDQLKEKLKSA-VLLIVSKNE 812

Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +AS ++  T D +    NA  +A+  A  +  G  GG+P  AQ G  + +  + A+   
Sbjct: 813 DRASFILSATADCVQKGINAGKIAKAFAASIN-GSAGGKPDFAQGGSKDLSNLNDAVKNA 871

Query: 893 ASFL 896
             ++
Sbjct: 872 HKYI 875


>gi|258645603|ref|ZP_05733072.1| alanine--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402961|gb|EEW96508.1| alanine--tRNA ligase [Dialister invisus DSM 15470]
          Length = 868

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/908 (36%), Positives = 496/908 (54%), Gaps = 55/908 (6%)

Query: 2   SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + IR  +L FF+ K  H  L S  LIP +DP+L+   +GM P K  FTG+ +P    
Sbjct: 1   MKGNDIREAYLSFFETKKEHLRLKSFPLIPKDDPSLLLIGAGMAPLKPYFTGKVEPPCHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R G    D++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   L
Sbjct: 61  VTTSQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAWAWEFLTEVIKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  RLY+T+Y +D E++  W  + GL    I  ++  DNFW + E GPCGP SEIF+DQG
Sbjct: 117 ESSRLYVTIYPDDRESYDYWHDMIGLPESHIYPLS--DNFWEIGE-GPCGPDSEIFYDQG 173

Query: 181 ECIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E            +G+R++EIWNLVF QF+QQ       L K +IDTG GLER++ VLQ+
Sbjct: 174 EEFGTDPENQMGGDGDRFLEIWNLVFSQFDQQKDGSYRPLDKKNIDTGAGLERLSAVLQK 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K NN++ DLF  +IQ +  + G+ Y     + V  +VI DH R+ + +IADGILP+NEGR
Sbjct: 234 KKNNFETDLFFPIIQEAAGLAGVPYGRSTESDVALKVISDHTRAITNMIADGILPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ Y +L+G  +  +  ++  +   M  AYPEL++ +  I++    E+ R
Sbjct: 294 GYVLRRVLRRAVRYGKLIGIDDAFLGRMIDVVVKMMKPAYPELMEKQAFIKKVAGVEENR 353

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL+ G+ LL  +L      +  IL GD  FKLYDT+G P ++ ++I   +G   ID 
Sbjct: 354 FHATLNAGMDLLAEMLEETLKKQRRILTGDRVFKLYDTYGFPWELTEEIAKEQG-IEIDK 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A+ EQ+ RARA    + +         LK +   T+                   
Sbjct: 413 DGFAAAMAEQKERARAARTKVSARIATPDTTKLKSESMTTE------------------- 453

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  + + G+ V+ A  G+ + V+    PF+AE GGQ+GD+G   
Sbjct: 454 ---------DTDGDTEILLLGKDGQAVQSAADGENITVILKNNPFHAEGGGQIGDSGVLE 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+   + I D +K  +GI      V  G++ T  ++   +D + R  ++ NH+ THLL  
Sbjct: 505 GNSGIISIEDTKKLPDGIVYCIGTVTEGVISTGETVKTVVDRERREDIARNHTGTHLLQA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LGS V+Q GS + P+ LRFD T  + +T  ++  +E  VN+ I ++  +    M 
Sbjct: 565 ALRRVLGSQVNQAGSLVLPEKLRFDFTWPEAVTDKQIAEVERIVNEQIWKSTTLDIDEMP 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A   GA AL G KY + VRVV V        S+ LCGG+HV +TGEI    I+SES 
Sbjct: 625 IAKAKEMGAIALFGEKYGNIVRVVRVP-----DFSTELCGGSHVFNTGEIGCFRIISESG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +GIRRIEAITG+ A   ++   + L+  A+ LKV    + G++E+     ++ +    
Sbjct: 680 IGSGIRRIEAITGKAAYESMLADRKLLRESAALLKVKVEEIPGKIEKNLAALKEAEREIE 739

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K Q   + L     +  +   ++F   I+   +  EL+   D ++ K   G  +L   
Sbjct: 740 RFKNQQTKDALGNLLKNVREKNGISFFGAIVPAANMDELRKAADIVKGKFPRGAFILGAA 799

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + E K +++ + +E+ +    +   +   +AK+ GGGG GG+P +AQ+GG N ++   AI
Sbjct: 800 AGE-KVNLVGMASEEAVKTGIHMGKVVSAAAKICGGGG-GGKPAVAQAGGKNISELQNAI 857

Query: 890 AGVASFLK 897
                 ++
Sbjct: 858 DEGVRIIE 865


>gi|149277763|ref|ZP_01883903.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Pedobacter sp.
           BAL39]
 gi|149231451|gb|EDM36830.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Pedobacter sp.
           BAL39]
          Length = 900

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/943 (32%), Positives = 487/943 (51%), Gaps = 93/943 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L+FF+   H ++PS+ ++  NDPTLMFTN+GM  FK++F G+    Y  +
Sbjct: 1   MTAKEIRQAYLKFFESKQHHIVPSAPIVVKNDPTLMFTNAGMNQFKDLFLGEAAIKYPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT+ + + 
Sbjct: 61  TDTQRCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEVYRIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + +LY+++++         DEEA++LWK+   +  ++II     DNFW M +TGPCGPCS
Sbjct: 121 KDKLYVSIFEGDEKEGLPRDEEAYELWKQF--VPEERIILGNKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + IEIWN VFMQF +        LP   +DTGMG
Sbjct: 179 EIHVDCRPDDERATVAGKSLVNADHPQVIEIWNNVFMQFNRLKDGSLQPLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+  VLQEK +NYD D+F+ LIQ      G+ Y  +    +  RV+ DH+R+ SF+IA
Sbjct: 239 FERLVRVLQEKPSNYDTDVFQPLIQFIASHAGVVYGADEKTDIAMRVMADHIRAISFVIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   EP +  L+P L  +    + EL+  K  
Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNLKEPFLNQLVPVLADQFSGVFDELVLQKDF 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSH-------------------------LGKDEI 381
           +++ +  E+  F +TL  G+   +                              L    +
Sbjct: 359 VQKVVMEEEVSFLRTLATGIQRFENYTKKQADFLMSENAIDTEKPFEHPWVYSILKDQMV 418

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           ++GD AF+L DT+G P+D+ + +   +    ID+  +N AL +Q+ R+RA          
Sbjct: 419 ISGDFAFELNDTYGFPIDLTELMAREKNW-VIDMKEYNTALLKQKERSRAA------TAI 471

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
           +   + +      ++F+GYD       + + RKV                          
Sbjct: 472 DTGDWIVVHGDLDSEFVGYDDFETETQVIKYRKV-------------------------- 505

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
              A   ++ ++V  +TPFYAE+GGQ+GDTG          +     K E   + H   +
Sbjct: 506 --NAKGREQYQIVLSKTPFYAESGGQVGDTGRLEDHSRLFSVEVTDTKKENGVIVH-YTD 562

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                 + +    ID   R     NH+ATHLLH AL  +LG+HV+Q GS + P+ LRFD 
Sbjct: 563 TLPEDLDGTFWAVIDEDKRLLSQDNHTATHLLHAALKKVLGTHVNQKGSLVNPEYLRFDF 622

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +H   I+  +L +IE  VN  + +N+P+   R +  + AI+SG  AL G KY + VRV++
Sbjct: 623 SHFAKISEEDLAAIEHLVNQKVRENIPLKEQRDVPYDQAISSGVTALFGEKYGELVRVIT 682

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
            +      +S  LCGGTHV +TG+I    I+SES++ AG+RRIEAIT  +A + ++ Q+ 
Sbjct: 683 FDDH----YSKELCGGTHVQATGQIGYFKIISESAVAAGVRRIEAITADKAEAFILDQNR 738

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVN 795
           +L  L + LK +  ++   V  + EE  +L+    K  L  + +  +        +  +N
Sbjct: 739 ELNELKALLKGN-KDLKAAVSGLLEENARLKKEAEKAMLAQSADLKNEVIKLAKDVNGMN 797

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAV 853
           F++  +       +K++   ++  + S + ++     + K  + +++TE+L+     NA 
Sbjct: 798 FIATHVVLNSMDAVKNLAFEVKD-LVSNLFLVFTTLIDDKPGITVMLTENLVKERGLNAS 856

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++ R  AK + GG GGG+P  A +GG N +     +      +
Sbjct: 857 NIVRELAKEIQGG-GGGQPFYATAGGKNKDGLAVVLQKAEDIV 898


>gi|300814156|ref|ZP_07094439.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511813|gb|EFK39030.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 874

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/908 (36%), Positives = 512/908 (56%), Gaps = 50/908 (5%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+    IR  FL FF+K GH++LPS SLIP ND +L+   +GM P K  FTG+  P  
Sbjct: 5   MKNLGLHEIRKEFLSFFEKKGHKVLPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEATPPG 64

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D+DNVG+T+RH TFFEMLGNFSFG YFK+  I  A++ LT   
Sbjct: 65  KRVTTCQKCIRTG----DIDNVGKTDRHATFFEMLGNFSFGDYFKKEVIPWAYEFLTVNL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++++  L++TVY +D+EAF +WK   G++ D+IIR+   DNFW + E GP GPC+EI+ D
Sbjct: 121 EINKDDLWVTVYKDDDEAFNIWKNDIGIAEDRIIRLGKEDNFWEL-EVGPSGPCTEIYVD 179

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +G            EG+R+IE+WNLVF QF++  K     L   +IDTGMGLER+ATVLQ
Sbjct: 180 RGLKYGSIDERPGGEGDRFIEVWNLVFTQFDKDEKGNYTPLSHPNIDTGMGLERIATVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID    +I   E+++G KY  +    V+ RVI DH+R+ +FL+ D + P+NEG
Sbjct: 240 GTNNIFEIDAITEIINEIEKISGYKYGTDKKLDVSTRVITDHIRAITFLVGDTVRPSNEG 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG  +  +  L   +    G  Y EL++    I++ ++ E+E
Sbjct: 300 RGYVLRRLIRRAARHGRLLGIKKTFLYELCDFIIKSWGENYKELVENSQRIKDVIKGEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F  T++ G+ +LD  +  L    ++IL+G+ +FKLYDT+G P D+ ++IL  +G   +D
Sbjct: 360 KFQMTIESGMNILDSYIEKLKSSNEKILSGEDSFKLYDTYGFPPDLTKEILTEKGFE-MD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  FN  +++Q+ RAR        G       S+  K+   +F+GY+             
Sbjct: 419 MDGFNDYMDKQKKRARNAHKDTNIGWDSHTDESVFTKF-KNEFVGYEE------------ 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      +   + +  I +    V+     +K  ++ D+TPFY E GGQ+GDTG  
Sbjct: 466 -----------DKCQANIIGIFKDYTEVQNIGPEEKAVLILDKTPFYGEGGGQVGDTGYI 514

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            GD  + ++ D +K  EG+ +H   V  G +         ID   R  +  NHS THLLH
Sbjct: 515 DGDDFKCRVIDTKKTREGLHLHIVEVLDGEVTKGPCF-AEIDVVRRNNIRRNHSVTHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG HV+Q GS +  D LRFD TH + ++  E+K +E+ VN  I + L V T + 
Sbjct: 574 KALKEILGDHVNQAGSLVEADRLRFDFTHYQAMSQEEIKKVEERVNQKIFEALSVTTTVT 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N + A   GA  L   KY D VRV+S+     G +S  LCGGTHV +T EI +  I+SES
Sbjct: 634 NPKHAQELGAVGLFEEKYGDIVRVLSM-----GDYSIELCGGTHVRNTSEISMFKILSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIE +TG      L         +A  LK ++ +++ ++     E +KL    
Sbjct: 689 GVSSGVRRIEGVTGPAVYKMLNDTLNLRDEIAHELKANKTDILQKISSSLNEIKKLNKAI 748

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K   + ++LS       +   +N+++H   + D   L+ + D ++ K+ S +++L+ 
Sbjct: 749 DSLKHSSDKDELSNILDEVKEKNGINYLTHKFKDKDVNSLRDIADMVRNKLNS-VVVLLA 807

Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + +  +++DL+ + ++A  + +  +KV GGGG GGR  MA +GG +  K  +A
Sbjct: 808 TENDGKLNFVCALSKDLVSNGYSAGKIIKEVSKVCGGGG-GGRADMATAGGRDLGKVSEA 866

Query: 889 IAGVASFL 896
           +  +   +
Sbjct: 867 LKTLEGLI 874


>gi|325298627|ref|YP_004258544.1| alanyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324318180|gb|ADY36071.1| alanyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 872

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/919 (35%), Positives = 487/919 (52%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F++FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+  I  AW+ L     +
Sbjct: 61  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEVIGWAWEYLVDVLKI 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D   LY TV++         D EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 DPSILYATVFEGSPEEGLERDNEAAGYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++    IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSEEEKAKVPGRELVNKDNPLVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ K +NYD D+F+ +I+    +TG+ Y  +    V  RV+ DH+R+ +F I
Sbjct: 239 GFERLCMALQGKKSNYDTDVFQPIIKVIGDLTGLTYGKDPKVDVAMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   LG  +  M  L+P L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMFKLVPVLIENMGQAYPELKAQQP 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD V+  +   +   ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKVMNDAKAAQKTEISGVDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++   FN  +++Q+ RAR       +      W  L+E  G T F+GYD  
Sbjct: 419 ILRENGMT-VNEEEFNIEMQKQKQRARNA-----AAIETGDWVILEE--GETHFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V  +TPFYAE
Sbjct: 471 EYETRILRYRQIKQKNQTL----------------------------YQIVLSETPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   ++I D +K+           ++     +  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEIIDTKKENNLPIHI---AKQLPEHLDAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTPEQLREVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHVS+T
Sbjct: 620 RENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGS------SIEFCGGTHVSAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AG+RRIEAITG +    +    + +  L +    +  ++   + +
Sbjct: 674 GKIGMVKILSESSVAAGVRRIEAITGAKVEEMMDILQDTINDLKALFNNAP-DLRAAISK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K +       L  S  +I  V  +  ++  +  + +K++   L+
Sbjct: 733 YVDENAGLKKQMEEFMKEREASAKARLIESAKEIHGVKVIKAMLP-MRPEAIKNIAFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +    + +++G   + K  + +++++D +    NA  L R +AK++ GG GGG+PH A 
Sbjct: 792 GQFPENLFVVIGSIFDDKPMLTVIMSDDQVKAGLNAGQLVREAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    AI  V   
Sbjct: 851 AGGKNADGLSAAIDKVLEL 869


>gi|148243479|ref|YP_001228636.1| alanyl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|147851789|emb|CAK29283.1| Alanyl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 915

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/907 (36%), Positives = 502/907 (55%), Gaps = 53/907 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FLEF++  GH+ +PS+SLIP  DPT++ T +GM+PFK +F GQ++      T+ 
Sbjct: 45  AEIRAAFLEFYESRGHQPIPSASLIPV-DPTVLLTIAGMLPFKPVFLGQQERPAPRATSS 103

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD + 
Sbjct: 104 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDPKN 159

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    + 
Sbjct: 160 LVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPAL- 218

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ   NNY
Sbjct: 219 GDEDIDLEDDSRFIEFYNLVFMQYSRDAEGTLTPLANKNIDTGLGLERMAQILQGVPNNY 278

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   LI+ +  + G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY+L
Sbjct: 279 ETDLIYPLIETAAGLAGVDYRQLDVKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGYIL 338

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG ++P ++ +  A    M +AYP+L + + LI   L+ E+ RF +T
Sbjct: 339 RRLLRRVVRHGRLLGISKPFLVAMGEAAIALMQAAYPQLNERRELILAELQREEARFLET 398

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  VL+   K   ++G+ AF+LYDT+G PL++ ++I    GL+ +D+  F  A
Sbjct: 399 LERGEKLLADVLAAKPKQ--ISGEQAFELYDTYGFPLELTEEIAEEHGLS-VDLAGFEAA 455

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +E QR RA+A ++ +   T +     +     AT F GY+ L                  
Sbjct: 456 MEAQRQRAKAAAVSIDL-TLQGAIEQMAADLEATAFRGYEALEHP--------------- 499

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   S V A+V  GE  + A +G  V++V D TPFY E GGQ+GD G   G    +
Sbjct: 500 --------SCVVALVVNGEPAQTASAGDAVQLVLDSTPFYGEGGGQVGDRGSLNGQD-LI 550

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
              +   +   + VHH  +ERG L     +   +D   RR+   +H+ATHLL  AL  ++
Sbjct: 551 VSIESVNRQRDVSVHHGTIERGQLSVGDLVTAQVDPTCRRRAQAHHTATHLLQAALKQVV 610

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            S +SQ GS +  D LRFD    + +T AEL+ +E  +N  I +   +  + M  E A A
Sbjct: 611 DSSISQAGSLVDFDRLRFDFHCPRAVTPAELEQLEALINGWITEAHSLEVQEMAIEAAKA 670

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA A+ G KY D V        D    S  LCGGTHV++T EI L  IVSE+ + +GIR
Sbjct: 671 AGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSEAGVASGIR 725

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G    ++L  +D  +K L+   KV    +  RV  + EE +      A  + +L
Sbjct: 726 RIEAVAGPAVLAYLNERDVVVKQLSERFKVQPAEITARVAGLQEELKGATKALAAARSEL 785

Query: 782 -----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE--- 833
                         I +   +   +  VD   L+S    L  ++  G  +++G   +   
Sbjct: 786 AVAKAAALAAQAEAIGEHQLLVARLDGVDGGGLQSAAQGLADQLGDGAAVVLGGLPDPSD 845

Query: 834 -KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K  ++    + ++ +   A       AK+ GGGG GGRP++AQ+GG +G   D A+  
Sbjct: 846 LGKVILVAAFGKAVVAKGQKAGQFIGGVAKLCGGGG-GGRPNLAQAGGRDGAALDGALEQ 904

Query: 892 VASFLKK 898
             S L++
Sbjct: 905 AKSSLQQ 911


>gi|205830240|sp|A5GWM4|SYA_SYNR3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 882

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/907 (36%), Positives = 502/907 (55%), Gaps = 53/907 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FLEF++  GH+ +PS+SLIP  DPT++ T +GM+PFK +F GQ++      T+ 
Sbjct: 12  AEIRAAFLEFYESRGHQPIPSASLIPV-DPTVLLTIAGMLPFKPVFLGQQERPAPRATSS 70

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD + 
Sbjct: 71  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDPKN 126

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    + 
Sbjct: 127 LVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPAL- 185

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ   NNY
Sbjct: 186 GDEDIDLEDDSRFIEFYNLVFMQYSRDAEGTLTPLANKNIDTGLGLERMAQILQGVPNNY 245

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   LI+ +  + G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY+L
Sbjct: 246 ETDLIYPLIETAAGLAGVDYRQLDVKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGYIL 305

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG ++P ++ +  A    M +AYP+L + + LI   L+ E+ RF +T
Sbjct: 306 RRLLRRVVRHGRLLGISKPFLVAMGEAAIALMQAAYPQLNERRELILAELQREEARFLET 365

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  VL+   K   ++G+ AF+LYDT+G PL++ ++I    GL+ +D+  F  A
Sbjct: 366 LERGEKLLADVLAAKPKQ--ISGEQAFELYDTYGFPLELTEEIAEEHGLS-VDLAGFEAA 422

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +E QR RA+A ++ +   T +     +     AT F GY+ L                  
Sbjct: 423 MEAQRQRAKAAAVSIDL-TLQGAIEQMAADLEATAFRGYEALEHP--------------- 466

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   S V A+V  GE  + A +G  V++V D TPFY E GGQ+GD G   G    +
Sbjct: 467 --------SCVVALVVNGEPAQTASAGDAVQLVLDSTPFYGEGGGQVGDRGSLNGQD-LI 517

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
              +   +   + VHH  +ERG L     +   +D   RR+   +H+ATHLL  AL  ++
Sbjct: 518 VSIESVNRQRDVSVHHGTIERGQLSVGDLVTAQVDPTCRRRAQAHHTATHLLQAALKQVV 577

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            S +SQ GS +  D LRFD    + +T AEL+ +E  +N  I +   +  + M  E A A
Sbjct: 578 DSSISQAGSLVDFDRLRFDFHCPRAVTPAELEQLEALINGWITEAHSLEVQEMAIEAAKA 637

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA A+ G KY D V        D    S  LCGGTHV++T EI L  IVSE+ + +GIR
Sbjct: 638 AGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSEAGVASGIR 692

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G    ++L  +D  +K L+   KV    +  RV  + EE +      A  + +L
Sbjct: 693 RIEAVAGPAVLAYLNERDVVVKQLSERFKVQPAEITARVAGLQEELKGATKALAAARSEL 752

Query: 782 -----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE--- 833
                         I +   +   +  VD   L+S    L  ++  G  +++G   +   
Sbjct: 753 AVAKAAALAAQAEAIGEHQLLVARLDGVDGGGLQSAAQGLADQLGDGAAVVLGGLPDPSD 812

Query: 834 -KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K  ++    + ++ +   A       AK+ GGGG GGRP++AQ+GG +G   D A+  
Sbjct: 813 LGKVILVAAFGKAVVAKGQKAGQFIGGVAKLCGGGG-GGRPNLAQAGGRDGAALDGALEQ 871

Query: 892 VASFLKK 898
             S L++
Sbjct: 872 AKSSLQQ 878


>gi|296271979|ref|YP_003654610.1| alanyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296096154|gb|ADG92104.1| alanyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 850

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/895 (37%), Positives = 505/895 (56%), Gaps = 50/895 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA-VTTV 64
            IR  +L+FF+  GHE++ S  L+P +DPTL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRKEYLDFFKNKGHEVISSMPLVP-DDPTLLFTNAGMVQFKDIFTGAIPAPKNPTATSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +T    L   +
Sbjct: 61  QLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFITVNLALPIDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++T+++ D+EAF +WKK   +   +I R    DNFW+M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LWVTIHESDDEAFNIWKKY--IEPSRIKRFGDKDNFWAMGDTGPCGPCSEIFYDQGVENF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    EG+R++EIWNLVFMQ+EQ +   R  LPK SIDTGMGLER+  + +   NN
Sbjct: 179 GSDEDYLGGEGDRFLEIWNLVFMQYEQ-SNGVRTPLPKPSIDTGMGLERVIAIKEGVLNN 237

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D   FK L+    ++   +     I ++RVI DHLR+ SF+++ GIL  NEGR YV RR
Sbjct: 238 FDSSNFKPLVNEVAKLAKKQPTKETIGSYRVIADHLRAVSFMLSQGILFGNEGRPYVNRR 297

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ E  M  L+  L   MG  Y +L +    I+E +  E+ERF KT+ 
Sbjct: 298 ILRRAVRHGYLLGFREAFMSKLVDVLIKIMGEHYTDLKEQASFIKEQIMLEEERFFKTIA 357

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L  +   ++ +G+VAFKLYDT+G PLD+ +D+L  + L  +DI +F++ + 
Sbjct: 358 SGMTLFNEEL--INTKKLFSGEVAFKLYDTYGFPLDLTEDMLREKDLK-VDIETFDKLMN 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            Q+++A+A   G G   +E  +  L EKYG  +F+GY+                      
Sbjct: 415 AQKAKAKAAWKGSGDEASEGDFKVLLEKYGVNEFVGYENTSYK----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S+IV  + ++   V+    GQ   ++ D+TPFYA +GGQ GD G        + I
Sbjct: 458 -----STIVTLLDEKFNEVDSLEKGQTGWIMLDKTPFYATSGGQSGDIGALEDKQH-IAI 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            +   K  GI +    VE   L     +   +   NR +++ +HSATHLL  AL  +LG 
Sbjct: 512 IEETSKFHGINLSKIKVETSSLEKGEVVNAVVV--NRYEIAKHHSATHLLQSALKMVLGD 569

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
            VSQ GS      LRFD T+ K +T+ +++ ++D VN +I + L      +  E+A   G
Sbjct: 570 TVSQAGSLNNSSRLRFDFTYPKAMTNEQIEEVQDLVNSMITRGLKGSVEELPIEEAKQRG 629

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A A+ G KY D VRVV+      G  S   CGGTHV +T +I   YI+ ES + AG+RRI
Sbjct: 630 AIAMFGEKYGDMVRVVNF-----GDVSVEFCGGTHVRNTLDIGSFYILKESGVSAGVRRI 684

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G  A  +      K+  + S +K    +V+  ++++ E+ + L+    + +     
Sbjct: 685 EAVCGSAAIKYTNSIISKMNEIESEIK--NVDVISGIKKLKEQIKTLKQEVIEAQSASTT 742

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
             ++   I D   +  I+   D   +K ++D  +   +   I+L+  +K+ K  ++   +
Sbjct: 743 P-IAEEMIGDTKVIVDIVKNGD---IKKIVDDAKNGNEKVAILLI-QAKDDKVMLVAG-S 796

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++      A +  +  A ++GGGG GGRP  AQ+GG + +K D+A A   ++ K+
Sbjct: 797 KNT--NIKAGNWIKEIAPIVGGGG-GGRPDFAQAGGKDVSKVDEAKAKALTYAKE 848


>gi|42518570|ref|NP_964500.1| alanyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|48428507|sp|P61702|SYA_LACJO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|41582855|gb|AAS08466.1| alanyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
          Length = 882

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/920 (35%), Positives = 500/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSSQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLGLDPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF QF      +    P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I+ +E+++   KY     + V  ++I DH+R+ SF IAD
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIAD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I+
Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E+ERF  TL  GL LLD +++      D+ ++G  AFKL+DT+G P ++  +   
Sbjct: 354 KVIKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  ID   F++ ++ Q+ RAR     L S  ++ +  +L      ++F  Y  L   
Sbjct: 414 DAGLK-IDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEFE-YGTLEEK 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++A  G+   ++FD+TPFYAE GG
Sbjct: 470 H----------------------AKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGG 506

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  +      +      + A      H +     L      VL +D + RR L  
Sbjct: 507 QVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDVILPLEKGQEYVLKVDQKRRRGLKH 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ S+E  VN+ I +
Sbjct: 567 NHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T + + +  +  GA AL G KY D VRVV +        S+  CGGTH  +T +I
Sbjct: 627 EIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K     +VV ++  I 
Sbjct: 682 GMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKISSIE 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R  Q    + K Q+N            ++ D+  ++         +L+ + D  +  
Sbjct: 742 DDLRASQKEAEQLKAQINKAKAGDLFNDIKQVKDLTVIAAQADVEGMNDLRELADNWKSS 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L       KA+++I + +  +     A DL + +A + GGGG GGRP+MAQ+G
Sbjct: 802 NKSDVLVLAA-EVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIFGGGG-GGRPNMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      AIA V   +++
Sbjct: 860 GKNPAGLKDAIAKVLQEVEE 879


>gi|300934543|ref|ZP_07149799.1| alanyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 887

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/919 (34%), Positives = 484/919 (52%), Gaps = 58/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F++ F   GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRERFIKHFTNAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFATA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LL       
Sbjct: 60  TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGDYFKEGAIKHAWALLINSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 116 GFGLDPDRLWVTVYTDDDEAAEIWEKKVGVPAERIQRLGMADNYWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   +  RYIEIWNLVFM+ E+       N +    LPK +IDTGMG+
Sbjct: 176 YDRGPE-HGKEGGPIVDDTRYIEIWNLVFMENERGEGIGKDNFEIVGPLPKKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ+  N Y+ DL + +I  +E++TG  Y  N+  N   RVI DH R+   L+ D
Sbjct: 235 ERVACILQDVENVYETDLLRPVIDEAERLTGATYGDNHTDNVRFRVIADHCRTGLMLMLD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +  ARLLG T   M  L+  +   M  +YPE+      I 
Sbjct: 295 GVTPGNEGRGYILRRLLRRIIRSARLLGATGTTMERLMDTVRQTMTPSYPEIADNWERIR 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E++ F KTL+ G  L +     +      +++G  AF L+DTHG P D+  ++  
Sbjct: 355 SVAVGEEKAFLKTLESGSQLFENAAAQAKSEGKSVVDGATAFSLHDTHGFPFDLTVEMAN 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G+  +D   F++ + EQ++RA+A +     G  ++  +        T F GY  +   
Sbjct: 415 EAGMT-VDEAGFHELMAEQKARAKADNNAKKMGHADQTIYRPFVDNHPTAFTGYTHIED- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  I+++G++V+   +G + +++ D+TPFYAEAGG
Sbjct: 473 ----------------------ESAVLGIIKEGQLVDRVAAGDQAQIIVDRTPFYAEAGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G   G+     +TDVQK  + ++VH A V  G L     L  ++D   R Q    
Sbjct: 511 QMADRGTFRGESGAADVTDVQKVGKKVWVHFATVTGGELAVGQKLTASVDDAWRHQARQA 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THL+H AL  +LG    Q GS   P  LRFD  +   +T+ +L  IED  N  +  +
Sbjct: 571 HSGTHLIHAALRDVLGPTAVQAGSMNRPGYLRFDFQYGDQLTAEQLSRIEDIANAAVDSD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGG HV  + +I 
Sbjct: 631 YKVNTIETSLEEARAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGIHVEHSSQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RRIEA TG  +   L G    +  LA+ LK     +  R++ +  +
Sbjct: 687 PIAVLGESSVGSGVRRIEAYTGMDSFRFLSGGKNVVADLAANLKTPSEELPERIDALTAK 746

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            +  +    + + Q  +            I  +  ++  +   V + +++++    + + 
Sbjct: 747 LKAAEKQIQQMRNQQLLAGVGDLVAKAETIGGIKVVAVQLPEGVSAGDVRTMATDAKARF 806

Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            S   ++    S + K   +  VT+  +D+   A +L +   + +GG G GG+P MAQ  
Sbjct: 807 GSDAAVVFFTASDDGKVPFVAAVTDAAVDKGLKAGELVKTFGEKVGGRG-GGKPAMAQGS 865

Query: 879 GPNGNKADQAIAGVASFLK 897
           G +       +  V + ++
Sbjct: 866 GSDPAGIAAGLEAVKAMVE 884


>gi|159902592|ref|YP_001549936.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|205830180|sp|A9B9E5|SYA_PROM4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|159887768|gb|ABX07982.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 890

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/909 (36%), Positives = 514/909 (56%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IRT FL FF + GH++LPS+SL+P +DPT++ T +GM+PFK +F G E+     V 
Sbjct: 16  TGEEIRTAFLHFFAERGHQVLPSASLVP-DDPTVLLTIAGMLPFKPVFLGHEERPSSRVV 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RH T+FEMLGNFSFG YFK+ AIQ AW+L TK F LD 
Sbjct: 75  TSQKCIRT----NDIENVGRTARHQTYFEMLGNFSFGDYFKKEAIQWAWELSTKTFGLDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++++ ED++A+++W+ I G++ D+IIR+   DNFWS   TGPCGPCSE+++D    
Sbjct: 131 KYLVVSIFREDDDAYEIWRNIIGVNPDRIIRMDEADNFWSSGPTGPCGPCSELYYDFNPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFM+F + +      L   +IDTGMGLERMA +LQ+  N
Sbjct: 191 L-GNHCIDLEDDTRFIEFYNLVFMEFNRDSTGRLSSLSNCNIDTGMGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   L++    + G+ Y+  +     +++VI DH+R+   LI+DG+  +N GRGY
Sbjct: 250 NYETDLIYPLLEKVAYLVGVDYQKTDKKTRISYKVIGDHIRACVQLISDGVSASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P ++ L     + M S YP+L++ + +I + L+ E+ RF 
Sbjct: 310 ILRRLLRRIVRHGRLLGIPKPFLIDLGEVAISLMKSTYPQLLERRDVILKELQREELRFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  +LS+  K+  ++G+ AF+LYDT+G PL++ Q+I        +D+ +F 
Sbjct: 370 ETLERGERLLADLLSNNPKE--ISGEQAFELYDTYGFPLELTQEIAEE-NSIEVDLKAFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ QR RA+A S  +     + +  +++E    T F GY+ L                
Sbjct: 427 KAMQRQRIRAKAASTTIDLTLQDTLDKAVRE-LKPTNFKGYECL---------------- 469

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--AIGD 537
                    +S V+AI   GE+ +EA     ++V  D TPFY E+GGQ+GDTG       
Sbjct: 470 -------TETSTVQAIFINGELAQEAQENDVIQVALDITPFYGESGGQIGDTGILFKESV 522

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              L   D   +   +FVH  IV+ G L+    +   + + NRR+  INH+ATHLL  +L
Sbjct: 523 TNCLIEIDSVIRNNDVFVHRGIVKNGRLQVGDIIQSQVHHINRRRAQINHTATHLLQASL 582

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+GS +SQ GS ++ + LRFD   S P++S EL+ +E  +N  I+++  +V + M  +
Sbjct: 583 KEIVGSEISQAGSLVSFERLRFDFHCSSPVSSEELEKVEKKINLWISESHSLVVKEMKID 642

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA  +GA A+ G KY   VRVV V        S  LCGGTHV++T +I    IV ES I 
Sbjct: 643 DAKQAGAVAMFGEKYGTLVRVVDVPG-----VSMELCGGTHVANTADIGAFKIVGESGIA 697

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+ G     +   +D  ++ L+   KV    +V RV  + +E + L     K 
Sbjct: 698 AGIRRIEAVAGPGVFDYFNARDSVVRILSERFKVQSNEIVDRVIALQDEVKLLGKSLIKA 757

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI-- 830
           + ++              I   +++ H +  V S+ L+S    L  ++     +L+    
Sbjct: 758 QEEIAFAKTSALVSKATAIKSSHYIIHRLDGVPSEALQSAAKVLVDQLGDCSAVLLAGTP 817

Query: 831 --SKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             S   K  ++     + +    +A       AK+ GGGG GGRP+ AQ+GG +    D+
Sbjct: 818 TQSDPNKVILVAAFGAKTVAHGLHAGKFLGPIAKMCGGGG-GGRPNFAQAGGRDAKPLDK 876

Query: 888 AIAGVASFL 896
           A+      L
Sbjct: 877 ALDLAREQL 885


>gi|226366325|ref|YP_002784108.1| alanyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|226244815|dbj|BAH55163.1| alanyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 890

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/919 (35%), Positives = 484/919 (52%), Gaps = 60/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K  H  +PS+SLI  +DP L+F N+GMV F   F GQ+ P Y   
Sbjct: 1   MQTHEIRRRFLDHFVKAAHTEVPSASLI-LDDPNLLFVNAGMVQFVPFFLGQQTPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++NVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSVQKCVRTL----DIENVGITTRHNTFFQMAGNFSFGDYFKRDAIKHAWALLTSSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  R+++TVY +D+EA  +W+   G+   +I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPERIWVTVYLDDDEARDIWRDEVGVPETRIQRRGMADNYWSMGIPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           FD+G    G   G   + +RYIEIWNLVFMQ E+       N +    LPK +IDTGMG+
Sbjct: 176 FDRGPEF-GAEGGPEADEDRYIEIWNLVFMQNERGLGISKDNFEILGPLPKQNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G KY  + ++ V  RVI DH R+++ LIAD
Sbjct: 235 ERVAFLLQGVDNVYETDLVRPVIAKAEELSGRKYGVDHDDDVRFRVIADHARTAAMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YP L      IE
Sbjct: 295 GVNPGNDGRGYVLRRLLRRIVRSAKLLGADKPSMREFITVVRDTMAPSYPVLDTDFGRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F KTL  G  L +G            + G+ AF L+DT+G P+D+  ++  
Sbjct: 355 TVAVGEEAAFLKTLTSGSKLFEGAAESVKASGKSTIGGEQAFALHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + EQR RA+  +        +   +      G T+F G+  L   
Sbjct: 415 EAGLT-VDEEGFRALMAEQRQRAKDDAQARKHAHADLTIYKELLDRGPTEFTGFHELVS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++ QG+ V  A +GQ VEV+ D++P YAEAGG
Sbjct: 473 ----------------------EAHVLALISQGQRVPVATAGQDVEVILDRSPLYAEAGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G   G G+R+++ DVQK A+ ++VH   V+ G +     ++  +D   R+  +  
Sbjct: 511 QIADLGTLTGPGLRVKVNDVQKIAKKLWVHKVTVQDGQITEGDVVLAQVDAAWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD +    +T A+ + IE   N+ +A +
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALTEAQKQDIEVVANEAVAAD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T + + + A + GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I 
Sbjct: 631 YSVNTFVTDLDKAKSMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSSQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ E S+ +G+RR+EA  G  +  +L  +   L  L+S LKV    V  RVE + E 
Sbjct: 687 NVTLLGEQSVGSGVRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVER 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKI 820
            R  +    + + Q  +           ++  V  ++      V   +L+ ++  ++ + 
Sbjct: 747 LRVAEKELEQTRAQAVLASAGTFVDKAERVGPVLLVADSAPAGVGGNDLRGLVTDIRGRF 806

Query: 821 Q--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                +++L+G   + K   ++ V++   +   +A DL +     +GG G GG+  MAQ 
Sbjct: 807 GTQPAVVVLLG-DVDGKVPFVVAVSKAAQELGLSAGDLVKEFGPKIGGRG-GGKADMAQG 864

Query: 878 GGPNGNKADQAIAGVASFL 896
            G + +    A+  V   +
Sbjct: 865 SGSDTSGIAAALGAVRGQV 883


>gi|260578810|ref|ZP_05846717.1| alanine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258603108|gb|EEW16378.1| alanine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 887

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/921 (35%), Positives = 477/921 (51%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F+E F K GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P ++  
Sbjct: 1   MQTHEIRQRFIEHFTKAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFENG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGAYFKEGAITHAWTLLTDPVE 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
                LD  RL++TV+ +D+EA ++W K  G+   KI R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGLGLDPERLWVTVFTDDDEAAEIWNKKIGVPEHKIQRLGMEDNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFIL---PKMSIDTGM 228
           I++D+G    G   G   +  RYIEIWNLVFM+ E+     K    I+   PK +IDTG+
Sbjct: 176 IYYDRGPE-HGQEGGPIVDDTRYIEIWNLVFMENERGEGLGKGNFEIVGKLPKKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ+  N Y+ DL + +I  +++VTG KY  +  N V  RVI DH R+   L+
Sbjct: 235 GIERVACILQDVDNVYETDLLRPVIDVAQEVTGAKYGADQANDVRFRVIADHSRTGLMLM 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  ARLLG T   +   +  +   M  +YPE+ +    
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETLEKFMDTVRETMTPSYPEIAENYER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E++ F KTL+ G  + D     +    ++ + GDVAF L+DTHG P+D+ Q++
Sbjct: 355 IRAVALAEEKSFLKTLESGSQMFDNWAHGAKERGEDTVPGDVAFSLHDTHGFPIDLTQEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL       F+  + EQ++RA+A +     G  ++  +        T F GY+ L 
Sbjct: 415 AAEAGLKVEI-DGFHDLMAEQKARAKADNNAKKLGHVDQTIYRPFVDNQPTVFTGYENLA 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                      V  I++ G +VE A  G  V+V+ D+TPFYAEA
Sbjct: 474 D-----------------------EGSVLGIIRDGALVETASEGAAVQVILDRTPFYAEA 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G         ++ DVQK  + ++VHH  V  G L     +  T+D   R Q  
Sbjct: 511 GGQMADRGEMTTTSGSARVEDVQKVGKKVWVHHVTVSGGELAVGQKVQATVDKAWRHQAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS THL+H AL  +LG    Q GS   P  LRFD  + + +T  +L  IE+  N  + 
Sbjct: 571 QAHSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYGEQLTENQLNQIEEIANGAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGG HV  + +
Sbjct: 631 SDYQVNTIETSLEEAKAMGAMALFGENYGSEVRVVEI----GGPFSMELCGGIHVEHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +  + ++ ESS+ +G+RRIEA TG  +   L  +   +  LA+ LK     +  R++ + 
Sbjct: 687 VGPISVLGESSVGSGVRRIEAYTGMDSFRFLSTEKSLVAGLATSLKTPSEELPERIDALT 746

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    + + Q     +         I +V  ++  +   V + +L+++    + 
Sbjct: 747 AKLKAAEKQIQQLRAQQLQGQVGQLVEKAETIGEVKVLAERLPEGVAAGDLRTLAMDAKN 806

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++ S   +++   +  EK   V       +     A +L +   + +  G GGG+P MAQ
Sbjct: 807 RLGSEPAVVVFASVDGEKVPFVAAANDAAVDKGIKAGELVKAFGEKVS-GRGGGKPAMAQ 865

Query: 877 SGGPNGNKADQAIAGVASFLK 897
             G +       I  V S L+
Sbjct: 866 GSGSDAAGIPAGIEAVKSALR 886


>gi|329666846|gb|AEB92794.1| alanyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
          Length = 882

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/920 (35%), Positives = 500/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSSQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLGLDPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF QF      +    P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I+ +E+++   KY     + V  ++I DH+R+ SF IAD
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIAD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I+
Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E+ERF  TL  GL LLD +++      D+ ++G  AFKL+DT+G P ++  +   
Sbjct: 354 KVIKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  ID   F++ ++ Q+ RAR     L S  ++ +  +L      ++F  Y  L   
Sbjct: 414 DAGLK-IDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEFE-YGTLEEK 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++A  G+   ++FD+TPFYAE GG
Sbjct: 470 H----------------------AKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGG 506

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  +      +      + A      H +     L      VL +D + RR L  
Sbjct: 507 QVADHGEILNQNGELVARVADVQHAPNDQNLHFVDVILPLEKGQEYVLKVDQKRRRGLKH 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ S+E  VN+ I +
Sbjct: 567 NHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T + + +  +  GA AL G KY D VRVV +        S+  CGGTH  +T +I
Sbjct: 627 EIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K     +VV ++  I 
Sbjct: 682 GMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKISSIE 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R  Q    + K Q+N            ++ D+  ++         +L+ + D  +  
Sbjct: 742 DDLRASQKEAEQLKAQINKAKAGDLFNDIKQVKDLTVIAVQADVEGMNDLRELADNWKSS 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L       KA+++I + +  +     A DL + +A + GGGG GGRP+MAQ+G
Sbjct: 802 NKSDVLVLAA-EVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIFGGGG-GGRPNMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      AIA V   +++
Sbjct: 860 GKNPAGLKDAIAKVLQEVEE 879


>gi|257792293|ref|YP_003182899.1| alanyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|317490214|ref|ZP_07948702.1| alanyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|257476190|gb|ACV56510.1| alanyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|316910708|gb|EFV32329.1| alanyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
          Length = 878

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/928 (34%), Positives = 487/928 (52%), Gaps = 87/928 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--PVYQ 59
              + IR  +L FF++ G +  PSSSLIP +DP+L+ T++GMV FK  F  Q+     Y 
Sbjct: 4   MTSAEIREKYLSFFEEKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAPYI 62

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TTVQKCVR     ND+D +G T RH +FFEMLGNFSFG YFKE     A++  T+   
Sbjct: 63  GTTTVQKCVRT----NDIDIIGTTGRHQSFFEMLGNFSFGEYFKEEMCAWAYEFSTEVLG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY TVY +D+E  ++WKK+ G+  D I R+  +DNFW    TGPCGPCSEI+FDQ
Sbjct: 119 LPAERLYFTVYLDDDETIEIWKKL-GVPDDHISRLGEDDNFWRAGPTGPCGPCSEIYFDQ 177

Query: 180 GECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           GE    G P      + +R++E WNLVF Q++ Q       LPK +IDTGMGLER+A +L
Sbjct: 178 GEDFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGTFVPLPKKNIDTGMGLERIAAIL 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +NY+ D+ + L+   E++TG  Y  +    ++ R++ DH R+ +F+IADGILP+NE
Sbjct: 238 QGVQSNYETDVLRSLVAVGEKLTGTTYGEDAAIDLSLRIMADHSRAVAFMIADGILPSNE 297

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+    LLG  +P +   +  +   MG  YPE+++ + L    + SE+
Sbjct: 298 GRGYVLRRLLRRAVMKGHLLGLDKPFLNDYVDEIVNLMGHVYPEIVENRELTRRVILSEE 357

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERFG  L +G   LD  L+ L   E+L GD AF L+DT+G P+++ +++   RG   +D+
Sbjct: 358 ERFGSNLRQGRAFLDEALAELE-GEVLPGDRAFTLHDTYGFPVEVTRELCDERG-IEVDM 415

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKED 472
             F + ++EQR RARA +             +   + E  G T+F+GY            
Sbjct: 416 EGFGRCMDEQRERARAANTKDAEAAWSTYGGVMNEILEAVGPTEFLGYT----------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   + V A+V+ G  V+   +G +  VV D TPFYAE GGQ+GD G
Sbjct: 465 ------------KNDAEARVLALVKDGVQVDVLEAGDEGRVVLDATPFYAEKGGQIGDAG 512

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   + + D ++  +G+  H   VE G L    ++   ID   R ++  NH+ATH+
Sbjct: 513 VLAKDDAIVAVLDTKEPEKGLIAHTVKVESGRLSAGDAVHAAIDVPRRERIRRNHTATHI 572

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +    LRFD TH + +T+ ++  +E   N  I +N PV   
Sbjct: 573 LHWALREVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIAEVERLANQKIMENHPVRAY 632

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             +   A  +G  AL G KY + VRV+ +E       S  LCGGTHVS+T EI  + I S
Sbjct: 633 ETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFVKITS 687

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+S+ A +RRIEA+T   A +++   + +LK  A  L+V   +V  R     +  + LQ 
Sbjct: 688 ETSVGANLRRIEAVTSFDALAYMNRVEAELKEAAESLRVPLFDVSERTASNMKTLKDLQT 747

Query: 773 IHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              + +  +  + ++          A    +   + E D+ +++++ D L+ ++      
Sbjct: 748 KLKRGREAVADDGINALLETAQTSAAGYPVVFGRMPEADAGQMRNMWDVLRARLGQPGAA 807

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG------ 879
           ++   K+ K ++L   T + ++  F+A  + +  +                  G      
Sbjct: 808 VLATEKDGKPTLLAAGTPEAVEVGFDADAVIKAIS------------------GNIKGGG 849

Query: 880 -----------PNGNKADQAIAGVASFL 896
                       + +  D A+      L
Sbjct: 850 GGKAAMAQAGGKDASGIDAALQAARDML 877


>gi|227524340|ref|ZP_03954389.1| alanine--tRNA ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227088571|gb|EEI23883.1| alanine--tRNA ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 887

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 495/918 (53%), Gaps = 63/918 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S IR  FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 8   MKTLSSSQIRQMFLDFFQEKGHAIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  A++LLT  K
Sbjct: 68  PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPK 123

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D+ +LY+TVY +D +A K W +  G+S D II I   DNFW + + GP GP SEIF
Sbjct: 124 WFGWDKDKLYMTVYPKDTDAKKYW-EAVGVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 179

Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G       P   E        R++E+WN+VF QF    +     LP+ +IDTGMGLE
Sbjct: 180 YDRGADFDELAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 239

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++ Q    N++ DLF  +I+ +E  +  K       + V  R+I DH R+ +  I D
Sbjct: 240 RVVSIFQHARTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGD 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYV+RR++RRA+   + LG     +  L P +   + S YP++++ +  IE
Sbjct: 300 GALPSNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPKVLEQREYIE 359

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +RSE++RF +TL  GL LL  V++         ++G  AFKLYDT+G P ++ ++   
Sbjct: 360 KVIRSEEDRFNETLADGLKLLHDVIADTKAESKNEIDGPTAFKLYDTYGFPYELTKEEAS 419

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + +Q+ RAR    G  S   ++    L +    ++++GYD L   
Sbjct: 420 EVGL-DVDRQGFEVEMHKQKERARNARSGAKSMGVQRDL--LVKVKEDSEYVGYDTLDVK 476

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV+  ++V E+ +   +EV+FD+TPFYAE GG
Sbjct: 477 D----------------------AKLIDIVENEKLVSESKA-DTIEVIFDKTPFYAEMGG 513

Query: 527 QLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   ++      + A      H I  +  L       L +D     ++  
Sbjct: 514 QVADRGVILDENGDKVADVIDVQHAPNGQNIHTIKTQESLVKGQQYHLVVDKLFHSRVEK 573

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  +L  +LG H  Q GS + P  LRFD  H   +T  +L+ +E  VN  I +
Sbjct: 574 NHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMVNKQIFK 633

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T + + +     GA AL   KY D+VRVVS+     G  S   CGGTHV +T +I
Sbjct: 634 EIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVKNTRDI 688

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IVSES + AGIRRIEA+T + A   L  Q  +LK ++  LKV+Q  +V  RVE++ 
Sbjct: 689 GLFKIVSESGVGAGIRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPTRVEQLQ 748

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E + L+      + +L  +          +      ++ II +    +L+ + D  + K
Sbjct: 749 DEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLTDTWRSK 808

Query: 820 IQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G    +KA++++ V+++ + D   A DL +  A  + GG GGGRP+MAQ+G
Sbjct: 809 GLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNIKGG-GGGRPNMAQAG 866

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +  D+A+     +L
Sbjct: 867 GKDPSGLDKAMKAAIEWL 884


>gi|41407175|ref|NP_960011.1| alanyl-tRNA synthetase [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|118466707|ref|YP_882613.1| alanyl-tRNA synthetase [Mycobacterium avium 104]
 gi|48428510|sp|P61705|SYA_MYCPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830149|sp|A0QI75|SYA_MYCA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|41395526|gb|AAS03394.1| AlaS [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167994|gb|ABK68891.1| alanyl-tRNA synthetase [Mycobacterium avium 104]
          Length = 900

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/929 (35%), Positives = 482/929 (51%), Gaps = 70/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F G   P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTGSVEQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++I+GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+GE    GG P ++E+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGEEFGVGGGPIANED--RYVELWNLVFMQSERGEGTSKTDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286
           +ER+A VLQ   N Y+ DL + +I A        Y     ++ V +R+I DH R+++ LI
Sbjct: 234 VERVAFVLQGVHNVYETDLLRPVIDAVAARAPRPYDAGNHDDDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  ARLL    P++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVTPGNDGRGYVLRRLLRRVIRSARLLDIEGPIVGDLMATVRDAMGPSYPELVTDFDR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L D V S       + ++G  AF L+DT+G P+++  ++
Sbjct: 354 IARIAVAEETAFNRTLAAGSKLFDEVASTTKATGAKSISGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D + F + + EQR RA+A +        +   +      G T+F G+D L 
Sbjct: 414 ASEAGL-QVDEVGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELS 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG----QKVEVVFDQTPF 520
                                    + +  I   G+ V     G     +VE+V D+TP 
Sbjct: 473 S-----------------------EARILGIFVDGKRVPVVTHGGDGADRVELVLDRTPL 509

Query: 521 YAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           YAE+GGQ+ D G       G+  R  +TDVQK A+ ++VH   VE G      +++  +D
Sbjct: 510 YAESGGQIADEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVD 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            Q RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   IE
Sbjct: 570 PQWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRTQIE 629

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N  +  +  V T     E A A GA AL G  Y ++VRVV +    GG  S  LCGG
Sbjct: 630 EVTNQAVQADFEVHTFTEQLEKAKAMGAIALFGESYPEQVRVVEI----GGPFSLELCGG 685

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV ++ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V
Sbjct: 686 THVHNSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 745

Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810
             RV  + E  R  +    + +L               +I +V  ++  +S  + + +L+
Sbjct: 746 PARVANLVERLRAAEKELERMRLASARAAAGNAAAGAERIGNVRVVAQRMSGGMTAADLR 805

Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
           S++  ++ K+ S   ++ L+   +       +       D    A DL +  A  +  G 
Sbjct: 806 SLVGDIRGKLGSDPAVVALIAEGEGGSVPYAVAANPAAQDLGIRANDLVKQLAAPV-DGR 864

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGG+  +AQ  G +    D A+  V S +
Sbjct: 865 GGGKADLAQGSGKDPAGIDAALDAVRSEI 893


>gi|229822862|ref|ZP_04448932.1| hypothetical protein GCWU000282_00151 [Catonella morbi ATCC 51271]
 gi|229787675|gb|EEP23789.1| hypothetical protein GCWU000282_00151 [Catonella morbi ATCC 51271]
          Length = 881

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/919 (36%), Positives = 515/919 (56%), Gaps = 61/919 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+FF +  H+++PS+SLIP NDPTL++ N+G+ P K  F G E P  
Sbjct: 1   MKQLTSARIRQMYLDFFAEKQHQIIPSASLIPVNDPTLLWINAGVAPLKKYFDGTEVPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + +  VQKC+R     ND++NVG T RHHT FEMLGN+S G YFK+  I  AW+ LT  +
Sbjct: 61  RRLANVQKCIRT----NDIENVGYTARHHTLFEMLGNWSIGDYFKKEVIAWAWEFLTSER 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               +  +LY T Y ED+E  ++WK+  G  AD ++ +   DNFW +   GPCGP +EIF
Sbjct: 117 WLGFEADKLYATYYPEDKETPEIWKQQPGFIADHLVAVA--DNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E ER++EIWNLVF +F          LP  ++DTGMGLE
Sbjct: 174 YDRGQEFNNLAADDPENYPGGENERWLEIWNLVFSEFNHLPDDTYQPLPNKNVDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADG 289
           R+ +V+Q    NY+ DLF  +IQA E+V+G+ +    +  V+ +VI DH+R+ SF I+DG
Sbjct: 234 RVVSVIQNAKTNYETDLFVPIIQAIEKVSGVDFASAGDKQVSFKVIADHIRAVSFAISDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGY+LRR++RR++ + R LG +   +  L+P +   MG+ Y EL +    +++
Sbjct: 294 ALPSNEGRGYILRRLIRRSVMHGRKLGISRSFLSELVPVIADIMGAYYQELTEQLAFVQK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + +E+ERF +T++ G   L+ ++++L  +   ++ G  AF+LYDT G PL++  ++  +
Sbjct: 354 VILNEEERFHETIEGGEAHLNDLMANLKAEGKTVVPGAQAFQLYDTFGFPLELTVELADS 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +G + +D   F   +E QR RARA      S   +     L+    A  F+GY+ L    
Sbjct: 414 QGFS-VDQEGFETEMEAQRQRARAARSKEESMQVQSDL--LQNITDAFDFVGYETL---- 466

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                ++ +KAIV     V++  + Q+  V F+++PFYAE GGQ
Sbjct: 467 -------------------VTNATIKAIVLDEAKVDQLPAHQEGWVFFNRSPFYAEMGGQ 507

Query: 528 LGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           + D+G  +     +    DV+K  +G F+H        L    S  L +D   R + + N
Sbjct: 508 VADSGIILDGDQEVGQVLDVKKAPQGQFMHRIKTGEMPLTVGQSYTLEVDRAVRLKTNQN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LGSH +Q GS + PD LRFD +H   +T  ELK IE  VN  IA +
Sbjct: 568 HTATHLLHRALKVVLGSHANQAGSYVGPDRLRFDFSHFGKVTPEELKQIEAFVNQWIANS 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V    M+ EDA A+GA AL G KY D VRVV++        S  LCGGTHV++T EI 
Sbjct: 628 ANVDIAEMSIEDAKATGAMALFGEKYGDVVRVVNIAG-----ESIELCGGTHVNNTNEIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
              +++ES I AGIRRIEA+TGQ A +    Q E L+ + + LKV     ++ R+E++ E
Sbjct: 683 TFKLLAESGIGAGIRRIEALTGQAAVADYQAQAELLQEVQNHLKVAQASQLLPRLEQLQE 742

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E R+ Q        +L   +          + DV +++  +       ++ + D  +K+ 
Sbjct: 743 ELRQAQAQVESLNAKLLQAEAGQVFQDVQSVGDVTYVAINLGNQSVDGMRQMADIWKKEA 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S I++LV  S+E+K S+++ V E  L     A +L +  A ++GGGG GG+P MAQ+GG
Sbjct: 803 PSNILVLVA-SQEEKVSLMVQVDEQGLAAGLKAGNLIKPLAAIVGGGG-GGKPQMAQAGG 860

Query: 880 PNGNKADQAIAGVASFLKK 898
                  + +A V++ + +
Sbjct: 861 KKPEAIPELLAQVSAVINE 879


>gi|227499550|ref|ZP_03929657.1| alanine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
 gi|227218309|gb|EEI83563.1| alanine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
          Length = 870

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/911 (34%), Positives = 500/911 (54%), Gaps = 56/911 (6%)

Query: 1   MSNV--SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M N+  + +R+ +L FF  K GH LL S  LIP +D +L+  N+GM P K  FTG++K  
Sbjct: 1   MKNLGMNELRSKYLNFFGNKKGHTLLKSFPLIPIDDDSLLLINAGMAPLKKYFTGEKKMK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T+ QKCVR      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  A++ LTKE
Sbjct: 61  NNRATSSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAISWAYEFLTKE 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
            ++ +  L++TV+ ED+EA+ +W +  G+++++I+R    DNFW + E GPCGPCSEIF 
Sbjct: 117 LEISKDDLWVTVFKEDDEAYNIWHEHIGIASERILREGKEDNFWEL-EVGPCGPCSEIFV 175

Query: 178 DQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           D+G             ++  +R++E+WNLVF QF +  +     L   +IDTGMGLER+A
Sbjct: 176 DRGADRAIDENDNKPGNDNSDRFMEVWNLVFTQFNKDAQGNYTPLSHPNIDTGMGLERIA 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
            VLQ K N +++D+   +I   E++   KY     + V+ RVI DH ++ +FL+ DG++P
Sbjct: 236 MVLQNKDNIFEVDVMAAIISEIEKLANKKYKENKKDDVSIRVIADHSKAMTFLVCDGVIP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRR++RRA  + +LLG     +  ++  +       Y EL   +  I++ +R
Sbjct: 296 SNEKRGYVLRRLIRRAYRHGKLLGIDGEFLTKIVDKVIDTYKVEYDELETNRDKIKDIIR 355

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E+ERF KT+D+GL  L+ ++  +     ++L+G  AFKLYDT+G PLD+ ++IL  + L
Sbjct: 356 DEEERFQKTIDQGLERLNSLIDAIERVHGKLLDGKEAFKLYDTYGFPLDLTKEILEEKDL 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D  +FN  ++ Q+  AR         + + I     +    T+FIGYD L       
Sbjct: 416 -DVDEKTFNDQMQIQKQTARDARKKDAGWSLDNINT---DGLAKTEFIGYDKL------- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                            + + +  I ++         G    ++ D+T FYAEAGG++ D
Sbjct: 465 ----------------AIEAEILDIFEENSEASSISEGNNGIIISDKTSFYAEAGGEVAD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    +  R ++ DVQK+ +  F +   V  G +         +D   R  +  NHSAT
Sbjct: 509 TGIIFNNSFRAKVIDVQKQKDIYFHY-VEVLSGEITKGQIATFEVDRDRRFDIQRNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG  + Q GS +    LRFD +++K +T  E+K +ED VN  IA+   V 
Sbjct: 568 HLLDQALRDVLGEGIKQAGSLVDEYKLRFDFSYNKAMTKEEIKEVEDIVNRQIAKQELVT 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             I++ + +   GA  L   KY D+VRVVS+     G +S  LCGG HV+ T +I++  I
Sbjct: 628 KEIVDYKQSQQMGAIGLFEDKYKDKVRVVSM-----GDYSKELCGGCHVNYTSDILMFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
             E+S+ AG+RRIEA+TG++A   L   +  LK +AS L  +   ++ R+E +  E    
Sbjct: 683 NQETSVSAGVRRIEAVTGRKAYELLTKSENSLKVIASKLNTNVSTIINRIESLENEIENY 742

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   ++ K   + +          +I  +N +      V   EL+   + ++    + II
Sbjct: 743 KKDISRLKSNNSSDIVNELKADVKEIKGINLLVKKFDNVPMDELRDYENRIKNSFDNLII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   +S   K    + V ++L +++NA  + R  A++ GG G GG+ + AQ+GG N +K 
Sbjct: 803 VFASVS--DKIVFTVSVDDNLTNKYNAGKIVREIAQITGGNG-GGKKNFAQAGGKNISKL 859

Query: 886 DQAIAGVASFL 896
           D+A+  V+  +
Sbjct: 860 DEALKKVSEII 870


>gi|188995245|ref|YP_001929497.1| alanyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|188594925|dbj|BAG33900.1| alanyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 876

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 485/918 (52%), Gaps = 76/918 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF   GH+++PS+ ++   DPTLMFTN+GM  FK+I  G  +  Y  
Sbjct: 1   MLTSKEIRESFKTFFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTEAKYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVTVLGL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D +RLY TV++         D+EA   W +   L  ++II    +DNFW M +TGPCGPC
Sbjct: 121 DPQRLYATVFEGSPEEGLDRDDEAASYWAQF--LPEERIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           GL   ++   + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADSSLTPLPHKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI A   +TG+ Y  +  + +  RV+ DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIHALATMTGIGYGEDSASDIAMRVVADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLHCREAFMYRLLPTLIDTMGDAYPELQAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI   ++ E+E F +TL+ G+ LL+  ++        +L+G  AF+LYDT G PLD+   
Sbjct: 359 LISRVIKEEEESFLRTLETGIRLLEKKIADNKATGSTVLDGVAAFELYDTFGFPLDLTAL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +D   F+  +++Q+ RAR       +      W  L+E  G ++F GYD  
Sbjct: 419 ILSENGMT-VDESGFDTEMQKQKERARNA-----AAVEAGDWVVLRE--GESKFSGYDFT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +                              +  +VV   TPFYAE
Sbjct: 471 ETETEILRYRQVKQKNK----------------------------EYFQVVLLDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD+G  I +          K+   + VH   +++    T  + V  I+   RRQ 
Sbjct: 503 MGGQVGDSGQLIDESGVAYDIFDTKRENNLSVHL--MKKLPESTTDTFVARINQDKRRQA 560

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LG+HV Q GS ++P+ LRFD +H   ++  E++ +E+ V++ I
Sbjct: 561 EANHTATHLLHEALREVLGTHVEQKGSFVSPEVLRFDFSHFGKMSPEEIRKVEELVSERI 620

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             +      R +   +A A GA AL G KY + VRV+          S  LCGGTH+ ST
Sbjct: 621 RADFQREEFRDVPIAEAQAMGAMALFGEKYGEEVRVLKYGS------SVELCGGTHIPST 674

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I    IV+ESSI +G+RRIEA+TG  A   +  +++ L ++      +  N++  +++
Sbjct: 675 GMIGTFRIVTESSIASGVRRIEAVTGIGAERFIYEKEDILLAVKELFNNNP-NLIKSIKK 733

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVDSKELKSVMDAL 816
           + EE   L+   A  K +  ++        DV       F+   I  ++++  K +   +
Sbjct: 734 MLEEDASLKKQIADMKHERMLKFKKSLLEQDVRRRGIRLFLFQEI--MEAETAKDIAFQI 791

Query: 817 QKKIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM 874
             ++Q   +++ G ++   K ++ +++++DL +   +A  L R +AK + GG GGG+PH 
Sbjct: 792 AGELQESFVLIAGTTEGGEKCALTVMLSKDLTEGGMDAAKLVRSAAKHIQGG-GGGQPHF 850

Query: 875 AQSGGPNGNKADQAIAGV 892
           A +GG N      AI  +
Sbjct: 851 ATAGGKNPKGLPAAIQQI 868


>gi|150009141|ref|YP_001303884.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|298377115|ref|ZP_06987069.1| alanine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|205830169|sp|A6LEZ8|SYA_PARD8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149937565|gb|ABR44262.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|298266099|gb|EFI07758.1| alanine--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 873

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/920 (36%), Positives = 487/920 (52%), Gaps = 74/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  FN+A+++Q+ RAR       +      W +LK+  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERARNA-----AAIETGDWITLKD--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D +++          V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDTKRENNLPVHL---VTKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+   R M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L ++ ESSI AG+RRIEA+T + A   +  Q + ++ L + +     N+   +++
Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMN-HMPNLAQAMKK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE  +++       + K     E++     +   +  M   + + ++  +K+V   ++
Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVM-QFVGKANADAMKNVAFQIK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +     + + GI  + K ++++++++DL+    +A  + + +AK + GG GGG+PH A 
Sbjct: 792 AETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG N      A+  V   +
Sbjct: 851 AGGKNMEGLSIAVGAVKEAV 870


>gi|255015752|ref|ZP_05287878.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_7]
          Length = 873

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/920 (36%), Positives = 487/920 (52%), Gaps = 74/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  FN+A+++Q+ RAR       +      W +LKE  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERARNA-----AAIETGDWITLKE--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D +++          V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDTKRENNLPVHL---VTKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+   R M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L ++ ESSI AG+RRIEA+T + A   +  Q + ++ L + +     N+   +++
Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMN-HMPNLAQAMKK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE  +++       + K     E++     +   +  M   + + ++  +K+V   ++
Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVM-QFVGKANADAMKNVAFQIK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +     + + GI  + K ++++++++DL+    +A  + + +AK + GG GGG+PH A 
Sbjct: 792 AETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG N      A+  V   +
Sbjct: 851 AGGKNMEGLSIAVGAVKEAV 870


>gi|301310907|ref|ZP_07216836.1| alanine--tRNA ligase [Bacteroides sp. 20_3]
 gi|300830970|gb|EFK61611.1| alanine--tRNA ligase [Bacteroides sp. 20_3]
          Length = 873

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/920 (36%), Positives = 487/920 (52%), Gaps = 74/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  FN+A+++Q+ RAR       +      W +LKE  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERARNA-----AAIETGDWITLKE--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D +++        A   +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDTKRENNLPVHLVA---KLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+   R M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L ++ ESSI AG+RRIEA+T + A   +  Q + ++ L + +     N+   +++
Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMN-HMPNLAQAMKK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE  +++       + K     E++     +   +  M   + + ++  +K+V   ++
Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVM-QFVGKANADAMKNVAFQIK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +     + + GI  + K ++++++++DL+    +A  + + +AK + GG GGG+PH A 
Sbjct: 792 AETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG N      A+  V   +
Sbjct: 851 AGGKNMEGLSIAVGAVKEAV 870


>gi|256841698|ref|ZP_05547204.1| alanyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|256736592|gb|EEU49920.1| alanyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 873

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/920 (36%), Positives = 489/920 (53%), Gaps = 74/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI +FN+A+++Q+ RAR       +      W +LKE  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEAFNKAMQKQKERARNA-----AAIETGDWITLKE--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D +++          V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDTKRENNLPVHL---VTKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+   R M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L+++ ESSI AG+RRIEA+T + A   +  Q + ++ L + +     N+   +++
Sbjct: 674 GMIGSLHVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMN-HMPNLAQAMKK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE  +++       + K     E++     +   +  M   + + ++  +K+V   ++
Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVM-QFVGKANADAMKNVAFQIK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +     + + GI  + K ++++++++DL+    +A  + + +AK + GG GGG+PH A 
Sbjct: 792 AETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG N      A+  V   +
Sbjct: 851 AGGKNMEGLSIAVGAVKEAV 870


>gi|227888705|ref|ZP_04006510.1| alanyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
 gi|227850732|gb|EEJ60818.1| alanyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
          Length = 892

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/920 (35%), Positives = 500/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 11  MKQLTSSQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 70

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K
Sbjct: 71  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPK 126

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF
Sbjct: 127 WLGLDPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIF 183

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF QF      +    P  +IDTGMGLE
Sbjct: 184 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I+ +E+++   KY     + V  ++I DH+R+ SF IAD
Sbjct: 244 RVVSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIAD 303

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE+++ +  I+
Sbjct: 304 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVEQQAFIQ 363

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E+ERF  TL  GL LLD +++      D+ ++G  AFKL+DT+G P ++  +   
Sbjct: 364 KVIKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQ 423

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  ID   F++ ++ Q+ RAR     L S  ++ +  +L      ++F  Y  L   
Sbjct: 424 DAGLK-IDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEFE-YGTLEEK 479

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++A  G+   ++FD+TPFYAE GG
Sbjct: 480 H----------------------AKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGG 516

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  +      +      + A      H +     L      VL +D + RR L  
Sbjct: 517 QVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDVILPLEKGQEYVLKVDQKRRRGLKH 576

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ S+E  VN+ I +
Sbjct: 577 NHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNEKIWE 636

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T + + +  +  GA AL G KY D VRVV +        S+  CGGTH  +T +I
Sbjct: 637 EIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQI 691

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K     +VV ++  I 
Sbjct: 692 GMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKISSIE 751

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + R  Q    + K Q+N            ++ D+  ++         +L+ + D  +  
Sbjct: 752 ADLRASQKEAEQLKAQINKAKAGDLFNDIKQVKDLTVIAAQADVEGMNDLRELADNWKSS 811

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L       KA+++I + +  +     A DL + +A + GGGG GGRP+MAQ+G
Sbjct: 812 NKSDVLVLAA-EVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIFGGGG-GGRPNMAQAG 869

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      AIA V   +++
Sbjct: 870 GKNPAGLKAAIAKVLQEVEE 889


>gi|282882868|ref|ZP_06291473.1| alanine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|281297279|gb|EFA89770.1| alanine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
          Length = 874

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/908 (36%), Positives = 511/908 (56%), Gaps = 50/908 (5%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+    IR  FL FF+K GH++LPS SLIP ND +L+   +GM P K  FTG+  P  
Sbjct: 5   MKNLGLHEIRKEFLSFFEKKGHKVLPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEATPPG 64

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D+DNVG+T+RH TFFEMLGNFSFG YFK+  I  A++ LT   
Sbjct: 65  KRVTTCQKCIRTG----DIDNVGKTDRHATFFEMLGNFSFGDYFKKEVIPWAYEFLTVNL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++++  L++TVY +D+EAF +WK   G++ D+IIR+   DNFW + E GP GPC+EI+ D
Sbjct: 121 EINKDDLWVTVYKDDDEAFNIWKNDIGIAEDRIIRLGKEDNFWEL-EVGPSGPCTEIYVD 179

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +G            EG+R+IE+WNLVF QF++  K     L   +IDTGMGLER+ATVLQ
Sbjct: 180 RGLKYGSIDERPGGEGDRFIEVWNLVFTQFDKDEKGNYTPLSHPNIDTGMGLERIATVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID    +I   E+++G KY  +    V+ RVI DH+R+ +FL+ D + P+NEG
Sbjct: 240 GTNNIFEIDAITEIINEIEKISGYKYGTDKKLDVSTRVITDHIRAITFLVGDTVRPSNEG 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG     +  L   +    G  Y EL++    I++ ++ E+E
Sbjct: 300 RGYVLRRLIRRAARHGRLLGIKTTFLYELCDFIIKSWGENYKELVENSQRIKDVIKGEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F  T++ G+ +LD  +  L    ++IL+G+ +FKLYDT+G P D+ ++IL  +G   +D
Sbjct: 360 KFQMTIESGMNILDSYIEKLKSSNEKILSGEDSFKLYDTYGFPPDLTKEILTEKGFE-MD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  FN  +++Q+ RAR        G       S+  K+   +F+GY+             
Sbjct: 419 MDGFNDYMDKQKKRARNAHKDTNIGWDSHTDESVFTKF-KNEFVGYEE------------ 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      +   + +  I +    V+     +K  ++ D+TPFY E GGQ+GDTG  
Sbjct: 466 -----------DKCQANIIGIFKDYNEVQNIGPEEKAVLILDKTPFYGEGGGQVGDTGYI 514

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            GD  + ++ D +K  EG+ +H   V  G +         ID   R  +  NHS THLLH
Sbjct: 515 DGDDFKCRVIDTKKTREGLHLHIVEVLDGEVTKSPCF-AEIDVVRRNNIRRNHSVTHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG HV+Q GS +  D LRFD TH + ++  E+K +ED VN  I + L V T + 
Sbjct: 574 KALKEILGDHVNQAGSLVEADRLRFDFTHYQAMSQEEIKKVEDRVNQKIFEALSVTTTVT 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N + A   GA  L   KY D VRV+S+     G +S  LCGGTHV +T EI +  I+SES
Sbjct: 634 NPKHAQELGAVGLFEEKYGDIVRVLSM-----GDYSIELCGGTHVRNTSEISMFKILSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIE +TG      L         +A  LK ++ +++ ++     E +KL    
Sbjct: 689 GVSSGVRRIEGVTGPAVYKMLNDTLNLRDEIAHELKANKTDILQKLSSSLNEIKKLNKAI 748

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K   + ++LS       +   +N+++H   + D   L+ + D ++ K+ S +++L+ 
Sbjct: 749 DSLKHSSDKDELSNILDEVKEKNGINYLTHKFKDKDVNSLRDIADMVRNKLNS-VVVLLA 807

Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + +  +++DL+ + ++A  + +  +KV GGGG GGR  MA +GG +  K  +A
Sbjct: 808 TENDGKLNFVCALSKDLVSNGYSAGKIIKEVSKVCGGGG-GGRADMATAGGRDLGKVSEA 866

Query: 889 IAGVASFL 896
           +  +   +
Sbjct: 867 LKTLEGLI 874


>gi|254775877|ref|ZP_05217393.1| alanyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 900

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/929 (35%), Positives = 482/929 (51%), Gaps = 70/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F G   P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTGSVEQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++I+GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+GE    GG P ++E+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGEKFGVGGGPIANED--RYVELWNLVFMQSERGEGTSKTDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286
           +ER+A VLQ   N Y+ DL + +I A        Y     ++ V +R+I DH R+++ LI
Sbjct: 234 VERVAFVLQGVHNVYETDLLRPVIDAVAARAPRPYDAGNHDDDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  ARLL    P++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVTPGNDGRGYVLRRLLRRVIRSARLLDIEGPIVGDLMATVRDAMGPSYPELVTDFDR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L D V S       + ++G  AF L+DT+G P+++  ++
Sbjct: 354 IARIAVAEETAFNRTLAAGSKLFDEVASTTKATGAKSISGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D + F + + EQR RA+A +        +   +      G T+F G+D L 
Sbjct: 414 ASEAGL-QVDEVGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELS 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG----QKVEVVFDQTPF 520
                                    + +  I   G+ V     G     +VE+V D+TP 
Sbjct: 473 S-----------------------EARILGIFVDGKRVPVVTHGGDGADRVELVLDRTPL 509

Query: 521 YAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           YAE+GGQ+ D G       G+  R  +TDVQK A+ ++VH   VE G      +++  +D
Sbjct: 510 YAESGGQIADEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVD 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            Q RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   IE
Sbjct: 570 PQWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRTQIE 629

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N  +  +  V T     E A A GA AL G  Y ++VRVV +    GG  S  LCGG
Sbjct: 630 EVTNQAVQADFEVHTFTEQLEKAKAMGAIALFGESYPEQVRVVEI----GGPFSLELCGG 685

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV ++ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V
Sbjct: 686 THVHNSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 745

Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810
             RV  + E  R  +    + +L               +I +V  ++  +S  + + +L+
Sbjct: 746 PARVANLVERLRAAEKELERMRLASARAAAGNAAAGAERIGNVRVVAQRMSGGMTAADLR 805

Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
           S++  ++ K+ S   ++ L+   +       +       D    A DL +  A  +  G 
Sbjct: 806 SLVGDIRGKLGSDPAVVALIAEGEGGSVPYAVAANPAAQDLGIRANDLVKQLAAPV-DGR 864

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGG+  +AQ  G +    D A+  V S +
Sbjct: 865 GGGKADLAQGSGKDPAGIDAALDAVRSEI 893


>gi|262384031|ref|ZP_06077167.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|262294929|gb|EEY82861.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
          Length = 873

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/920 (36%), Positives = 488/920 (53%), Gaps = 74/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  FN+A+++Q+ RAR       +      W +LKE  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERARNA-----AAIETGDWITLKE--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D +++        A   +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDTKRENNLPVHLVA---KLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+   R M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L+++ ESSI AG+RRIEA+T + A   +  Q + ++ L + +     N+   +++
Sbjct: 674 GMIGSLHVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMN-HMPNLAQAMKK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE  +++       + K     E++     +   +  M   + + ++  +K+V   ++
Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVM-QFVGKANADAMKNVAFQIK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +     + + GI  + K ++++++++DL+    +A  + + +AK + GG GGG+PH A 
Sbjct: 792 AETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG N      A+  V   +
Sbjct: 851 AGGKNMEGLSIAVGAVKEAV 870


>gi|311894842|dbj|BAJ27250.1| putative alanyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 888

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/922 (35%), Positives = 503/922 (54%), Gaps = 61/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SL+  +DPTL+  N+GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLRFFEERGHTVVPSASLVA-DDPTLLLVNAGMVPFKPYFLGEIKPQFSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH +FF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRTL----DIEEVGKTTRHGSFFQMCGNFSFGDYFKEGAIKFAWELLTSPVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  RL+ITVY +D+EA ++W+++ G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEPERLWITVYQDDDEAERIWREVIGVPAERIQRLGMKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G +  GERY+EIWNLVFMQ+E+ +   +        LP  +IDTG+GL
Sbjct: 176 YDRGPAY-GEEGGPAVNGERYLEIWNLVFMQYERGHGDGKDGFEILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A VLQ   N ++ID  + ++  + ++TG  Y  +  + V+ RV+ DH R++  L+ D
Sbjct: 235 ERLAAVLQGVDNLFEIDTSRMILDRAAELTGHTYGADHRSDVSLRVVTDHFRTALMLVGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRI+RRA+   RLLG TEP+   L+      M   YPEL   +  IE
Sbjct: 295 GVTPGNEGRGYVLRRILRRAIRNMRLLGATEPVAKDLIDISIKAMAPQYPELETDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
             + +E+  F +TL  G  LLD  ++   +    +L+G+ AFKL+DT+G P+D+  ++  
Sbjct: 355 TVVVAEENAFLQTLRSGTSLLDAAVTETKQSGGAVLSGEQAFKLHDTYGFPIDLTLEMAE 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL  +D   F + ++EQR RA+A +    +G  +   +  + ++ GA+ F GY    G
Sbjct: 415 EQGL-QVDEAGFRRLMQEQRDRAKADAKAKKTGHADVAAYREVADRAGASVFTGYAHTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + V  ++  G     A  G +VE++ D+TPFYAE G
Sbjct: 474 -----------------------EATVVGLLVDGVPSPAATEGDEVELILDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  +++ DVQ+   G+ VH   V  G +    S   TID   RR +S
Sbjct: 511 GQLADHGRIRLDSGAVVEVRDVQQPVPGVIVHSGGVLFGEVVLGASAYATIDTDRRRAVS 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      +  + L  +E  +N+++ 
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENAPGRFRFDFGSPAAVPGSVLTDVEQKINEVLV 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M  ++A   GA A+ G KY D VRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVTAEVMTMDEARKQGAIAMFGEKYGDSVRVVTI-----GDFSKELCGGTHVGNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RR+EA+ G  A   L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYKFLAREHTVVAQLTELVKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    + + +  ++           +  V  ++  +     + EL+ ++  ++ 
Sbjct: 746 AKLKDAEKEIERFRAEKVLQAAAGLAEGAEDVRGVALVAARVGDGTGADELRKLVLDVRA 805

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++ S   ++    ++ ++  +V+    +       A +L R +AK LGGGG GG+  +AQ
Sbjct: 806 RLGSRPAVVAAFTVANDRPLTVIATNEDARGRGIKAGELVRAAAKTLGGGG-GGKDDVAQ 864

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            GG N      AI  V + + +
Sbjct: 865 GGGTNPAAVADAIEAVRALVAE 886


>gi|268318981|ref|YP_003292637.1| hypothetical protein FI9785_490 [Lactobacillus johnsonii FI9785]
 gi|262397356|emb|CAX66370.1| alaS [Lactobacillus johnsonii FI9785]
          Length = 882

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/920 (35%), Positives = 500/920 (54%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSSQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLGLDPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF QF      +    P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +++Q+   N++ DLF  +I+ +E+++   KY     + V  ++I DH+R+ SF IAD
Sbjct: 234 RVVSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIAD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I+
Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGQCLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E+ERF  TL  GL LLD +++      D+ ++G  AFKL+DT+G P ++  +   
Sbjct: 354 KVIKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  ID   F++ ++ Q+ RAR     L S  ++ +  +L      ++F  Y  L   
Sbjct: 414 DAGLK-IDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEFE-YGTLEEK 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++A  G+   ++FD+TPFYAE GG
Sbjct: 470 H----------------------AKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGG 506

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  +      +      + A      H +     L      VL +D + RR L  
Sbjct: 507 QVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDVILPLEKGQEYVLKVDQKRRRGLKH 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ S+E  VN+ I +
Sbjct: 567 NHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T + + +  +  GA AL G KY D VRVV +        S+  CGGTH  +T +I
Sbjct: 627 EIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K     +VV ++  I 
Sbjct: 682 GMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKISSIE 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R  Q    + K Q+N            ++ D+  ++         +L+ + D  +  
Sbjct: 742 DDLRASQKEAEQLKAQINKAKAGDLFNDIKQVKDLTVIAAQADVEGMNDLRELADNWKSS 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L       KA+++I + +  +     A DL + +A + GGGG GGRP+MAQ+G
Sbjct: 802 NKSDVLVLAA-EVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIFGGGG-GGRPNMAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      AIA V   +++
Sbjct: 860 GKNPAGLKDAIAKVLQEVEE 879


>gi|255532429|ref|YP_003092801.1| alanyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255345413|gb|ACU04739.1| alanyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 900

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/945 (32%), Positives = 488/945 (51%), Gaps = 93/945 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L+FF+   H ++ S+ ++  NDPTLMFTN+GM  FK++F G+    Y  V
Sbjct: 1   MTAKEIRQAYLKFFESKQHHIVASAPIVVKNDPTLMFTNAGMNQFKDLFLGEAPIKYPRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT+ + + 
Sbjct: 61  TDTQRCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEVYKIP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + +LY+++++ DE        EA++LWK+   +  ++II     DNFW M +TGPCGPCS
Sbjct: 121 KDKLYVSIFEGDEKEGLPRDTEAYELWKQY--VPEERIILGNKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D        +  G    + +  + IEIWN VFMQF +       +LP   +DTGMG
Sbjct: 179 EIHVDCRPDDERKLVEGKTLVNADHPQVIEIWNNVFMQFNRLKDGSLQLLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+  VLQ K++NYD D+F+ LIQ      G++Y  N    +  RV+ DH+R+ +F+IA
Sbjct: 239 FERLVRVLQGKSSNYDTDVFQPLIQFIAAKAGIQYGMNEQTDIAMRVMADHVRAIAFVIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   +P +  L+P L  +    + EL   +  
Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNLKDPFLNELVPVLAEQFKGVFEELALQQDF 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSH-------------------------LGKDEI 381
           +++ +  E+  F +TL  G+   D                              L    +
Sbjct: 359 VQKVILEEEVSFLRTLATGIQRFDSYTKKQAEFLMSENAIDPEKSFEDQWVHSILKDQMV 418

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           ++G+ AF+L DT+G P+D+ + +   +  + +D+  +N+AL +Q+ R+RA          
Sbjct: 419 ISGEFAFELNDTYGFPIDLTELMAREKRWS-VDMEEYNKALLKQKERSRAA------TAV 471

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
           +   + L       +F+GYD       + + R+V                          
Sbjct: 472 DTGDWVLVNPDLEVEFVGYDDAEAETEIIKYRRV-------------------------- 505

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
              A   ++ ++V  +TPFYAE+GGQ+GDTG          +     K E   + H   +
Sbjct: 506 --SAKGKEQYQIVLSKTPFYAESGGQVGDTGRLEDHSRLFFVEITDTKKENGVIVH-YAD 562

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                 E      ID   R     NH+ATHLLH AL  +LGSHV+Q GS + PD LRFD 
Sbjct: 563 TLPEDIEGHFWAVIDENKRLLSQDNHTATHLLHAALKKVLGSHVNQKGSLVNPDYLRFDF 622

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +H   +T  EL  IE  VN  I +N+P+   R +  + AI+SG  AL G KY D VR+++
Sbjct: 623 SHFARVTDEELSQIEHLVNQKIRENIPLKEQRYVPYDQAISSGVTALFGEKYGDLVRIIT 682

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
            +      +S  LCGGTHV +TG+I    I++ES++ AG+RRIEAIT  +A + ++ Q++
Sbjct: 683 FDDH----YSKELCGGTHVQATGQIGYFKIIAESAVAAGVRRIEAITADKAEAFVLAQNK 738

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVN 795
           +L  L   LK +  ++   V  + EE  +L+    K  L+ +             I  +N
Sbjct: 739 ELNELRELLKGN-KDLKAAVAGLIEENNRLKKDAEKAVLEQSANLKHEIVHHLKTINGIN 797

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAV 853
            ++  +   ++  +K++  A++  +   + ++     + K  + ++++E+L+     NA 
Sbjct: 798 LIATHVDLPNADAVKNLAYAVKD-MVDDLFLVFTTLIDDKPGITVMLSENLVKDRGLNAS 856

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++ R  AK + GG GGG+P  A +GG N       +    + + +
Sbjct: 857 NIVRELAKDIQGG-GGGQPFYATAGGKNKEGLAGVLHKAQAMMTQ 900


>gi|260061769|ref|YP_003194849.1| alanyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|88785901|gb|EAR17070.1| alanyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 871

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/920 (37%), Positives = 494/920 (53%), Gaps = 73/920 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR+ FL FF+  GH ++PS+ L+  +DPTL+F N+GM PFK  F G   P Y  V
Sbjct: 1   MTSREIRSRFLTFFKDRGHRIVPSAPLVVKDDPTLLFVNAGMNPFKEYFLGVSNPKYPRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFKE  I  AW+ LT+   +D
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGRDTYHHTLFEMLGNWSFGDYFKEETIGWAWEFLTEVCGID 120

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + RLY+T+++          D+EA+  WK I  L  D+I+  +  DNFW M + GPCGPC
Sbjct: 121 RDRLYVTIFEGSSDADALERDQEAYDFWKAI--LPEDRILMGSKKDNFWEMGDQGPCGPC 178

Query: 173 SEIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++    +EIWNLVF+Q+ ++       LP+  IDTGM
Sbjct: 179 SEIHVDIRPEEERRKTPGSELVNQDHPEVVEIWNLVFIQYNRKADGSLEPLPEKHIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ   +NYD DLF  LI+   ++TG  Y     + +  RVI DH+R+ SF I
Sbjct: 239 GFERLCMVLQGVRSNYDTDLFTPLIREIGKITGKDYGQSEEDDIAIRVIADHIRAVSFTI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP N G GYV+RRI+RRA+ Y    LG  EP M  L+  L  EMG A+PEL + + 
Sbjct: 299 ADGQLPGNSGAGYVIRRILRRAIRYGFTFLGAREPFMFRLVGTLVAEMGEAFPELAEQRR 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           L+E  +R E+  F KTL++GL  LD V++      +  G  AF+LYDT G P+D+   IL
Sbjct: 359 LVENVVREEEVSFLKTLEQGLARLDAVIAETRGKTVDGGR-AFELYDTFGFPIDLTSLIL 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG   +D   F+ A++EQ+ R+RA      S +  + W  +     A++F+GYD L  
Sbjct: 418 RERGYE-LDRQGFDAAMKEQKDRSRAA-----SESAAEDWVKVH-PGPASEFVGYDALEA 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +++ RK                           VE   +G   ++V D TPFY E G
Sbjct: 471 RSRIRKYRK---------------------------VESKKTGTLYQLVLDTTPFYPEGG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD+G   G G  +      +K     +H    E          +  +D + R+Q   
Sbjct: 504 GQVGDSGHLEGSGGAVTEILDTRKENNEILHI--TEALPEDPGAEFLAVVDAERRKQTRR 561

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LGSHV Q GS + P  LRFD +H   +   EL+ +ED VN+ IA 
Sbjct: 562 NHTATHLLHQALREVLGSHVEQKGSAVQPGYLRFDFSHFSKLKDEELRRVEDFVNERIAD 621

Query: 646 NLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            L V  +  +  ++A+ +GA AL G KY D VR V          S  LCGGTH  +T E
Sbjct: 622 GLDVEIKKGVPMQEALEAGAMALFGEKYGDTVRTVRFGD------SIELCGGTHADNTAE 675

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I+SES++ AG+RRIEAIT    R +   ++  L+++ + LK +Q  +   VE + 
Sbjct: 676 IWHFKILSESAVAAGVRRIEAITSDAVREYFADKERVLEAIRTRLKNAQDPL-QAVESLQ 734

Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE   L+    + K +           +  K   V+F++  + ++D+  +K +   L  +
Sbjct: 735 EENAGLKKELERLKREQAGNLKGDLKSALDKRDGVHFLARQV-DLDASSMKDLAFQLGGE 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           ++  + +L+G  ++ KA + + +++ L      NA  + R   K + GGG GG+P  A +
Sbjct: 794 VED-LFLLLGSEQDGKALLTLYISKGLAAEKDLNAGAIIRELGKHIQGGG-GGQPFFATA 851

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG N +   +A+   AS+L+
Sbjct: 852 GGKNPSGIGKALEAAASYLQ 871


>gi|255325071|ref|ZP_05366177.1| alanine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297636|gb|EET76947.1| alanine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 894

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/927 (34%), Positives = 485/927 (52%), Gaps = 66/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F + F  +GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MKTHEIRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFAKG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  LATSIQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGQYFKEGAITNAWTLLTGSVD 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGFGLDPDRLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGM 228
           I++D+G    G   G   +  RY+EIWNLVFMQ E+         +    LPK +IDTG+
Sbjct: 176 IYYDRGPEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGIGKGNFEIVGELPKKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSF 284
           G+ER+A +LQ+  N Y+ DL + +I  +E++TG  Y       + +  RV+ DH R+   
Sbjct: 235 GIERVACILQDVDNVYETDLLRPVIDVAEELTGATYGDKASHEDNIRFRVVADHSRTGMM 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NEGRGY+LRR++RR +  A+LLG     M   +  +   M  +YPE+   +
Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSAKLLGAKGATMERFMNTVMDTMTPSYPEIADNR 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPL 398
             I     +E++ F KTL+ G  L D  +  L         ++L G+ AF+L+DT+G P+
Sbjct: 355 ERILRVAVNEEKAFLKTLESGTRLFDDAVQELKSTSRAKTAKVLPGEKAFELHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++    GL  +D+  FN A+ EQR RA+A +     G T+   +        T F 
Sbjct: 415 DLTLEMAQEAGLE-VDMDGFNDAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFT 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G++ L                          + V  +V+ GE V++   G++VEV+ D T
Sbjct: 474 GFEELTSD-----------------------ARVIGLVRGGEKVDQVREGEQVEVILDHT 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           P YAEAGGQ+ D G  +     L++ DVQK  + ++VH A V  G L   MS+   +D Q
Sbjct: 511 PLYAEAGGQMADRGRIMAGESLLEVNDVQKIGKKLWVHKATVTAGGLDLGMSVEAAVDEQ 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R   +  HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++ A+L+ I   
Sbjct: 571 WRHGATQAHSATHLIHAALRQVLGPTAVQAGSMNRPGYLRFDFNYTEQLSQAQLEEIALI 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  N  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGGTH
Sbjct: 631 TNQAIDSNFAVNTIETSLEEAKAMGAMALFGENYGKEVRVVEI----GGPFSIELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V S+ EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV   ++  
Sbjct: 687 VGSSAEIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPE 746

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELKSV 812
           R+ ++ E+ +  +      + Q      S        +     ++  +       +L++V
Sbjct: 747 RIAQLSEKLKAAEKEIETLRKQQLAARASEFVSAAKDVNGFKVIALTLPEGTTGGDLRTV 806

Query: 813 MDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              L+ ++  +  +I+L    K K   +     + +     + D+ +   + +  G GGG
Sbjct: 807 ATDLRNRLREEEAVIVLGAEDKGKFPFIAAATDKAVGRGVKSGDIVKEFGQYV-DGRGGG 865

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
           +P MAQ  G     A++    V   L+
Sbjct: 866 KPDMAQGSGSTAAGAERGFEAVKDMLE 892


>gi|311747311|ref|ZP_07721096.1| alanine--tRNA ligase [Algoriphagus sp. PR1]
 gi|311302637|gb|EAZ83190.2| alanine--tRNA ligase [Algoriphagus sp. PR1]
          Length = 874

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/919 (36%), Positives = 496/919 (53%), Gaps = 72/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR+TF+EFFQ   H+ +PSS ++  NDPTLMFTN+GM  FK+ F G E P +  V
Sbjct: 1   MEAKKIRSTFIEFFQSKQHQYVPSSPIVVKNDPTLMFTNAGMNQFKDAFLGNETPKFARV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+LLT  F L 
Sbjct: 61  ANSQKCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTVVFKLP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY++V++ D+        EA+  WKKI  +  D+II  +  DNFW M +TGPCGPCS
Sbjct: 121 KERLYVSVFEGDQGDGLSLDTEAYNFWKKI--VPEDRIIMGSKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + + E+ IEIWNLVFMQ+ + +      LP   +DTGMG
Sbjct: 179 EIHIDLRPEAELAEIPGKDLVNNDHEQVIEIWNLVFMQYNRLSDGSLKELPAKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+   +Q+K++NYD DLF   + A  + +G  Y  +    +  RVIVDH+R+ SF IA
Sbjct: 239 FERLVRAIQQKSSNYDTDLFAPFLNAIAKKSGKVYGNDEQTDIAFRVIVDHIRAISFTIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y     G+ EP +  L   +    G  +PE+ Q +  
Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYGYTFFGFQEPFLYELTSLIAEHFGDVFPEVRQQQEF 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I + +  E+  F +TL+ GL +LD + + L    D ++ G  AF+LYDT G PLD+   I
Sbjct: 359 ISKVIYEEEASFLRTLENGLKILDQIKAELQEKNDTVIPGKTAFELYDTFGFPLDLTSLI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL+ +D   F   +E+Q++R+RA      S +    W  + E  G  +FIGYD L 
Sbjct: 419 ARENGLS-LDEKGFLAEMEKQKTRSRAA-----SESETGDWVLVHEDEGV-EFIGYDFLE 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               + + R                            V +   G+K +VV D+TPFYAE+
Sbjct: 472 SFSNIIKYR----------------------------VVKEKKGEKYQVVLDKTPFYAES 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G  I D  ++++ D +K+ + I      V++     E+     +D + R    
Sbjct: 504 GGQVGDKGWLISDNEKIRVIDTKKENDLIIHL---VDKLPSNPEVKFSAEVDRKGRALSM 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  AL  +LG H+ Q GS ++PD LRFD +H   +T  E+  +E+ VN  I 
Sbjct: 561 NNHTATHLLQSALKEVLGDHIQQRGSLVSPDLLRFDFSHFGKLTEEEITKVEEIVNTKIR 620

Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P V  R +  E+A + GA AL G KY D VRV++ +       S  LCGGTHV  T 
Sbjct: 621 ENIPLVEKRNVPIEEAKSMGATALFGEKYGDFVRVITFDP----DFSVELCGGTHVPYTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  I SE S  +G+RRIEAIT + A  +L GQ+  +K +   LK    ++   +E +
Sbjct: 677 QIGLFKITSEGSSASGVRRIEAITAKAAEDYLRGQENLVKEIQELLK-HPKDLKKSIEAL 735

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQK 818
            +E   L+       + K      +L    +A   +N +   +   ++  LK +   L+ 
Sbjct: 736 IQEKNDLKKEIELLYQEKAGAVKGELLKEFVAGEGINTLIAKVDLPNADSLKKLGYELKN 795

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++++  I+L   + + K  + +++ E+L+     NA  + R  AK + GGG GG+P  A 
Sbjct: 796 EVENPFIILAA-NIDGKPQIAVIIDEELVKSKNLNAGQIVRDLAKEIQGGG-GGQPFFAT 853

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N    +  ++     
Sbjct: 854 AGGKNLAGLENVVSKAREL 872


>gi|111024085|ref|YP_707057.1| alanyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|123144037|sp|Q0S0N7|SYA_RHOSR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110823615|gb|ABG98899.1| alanine--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 890

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/919 (35%), Positives = 481/919 (52%), Gaps = 60/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMV F   F GQ+ P Y   
Sbjct: 1   MQTHEIRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVQFVPFFLGQQTPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++NVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSVQKCVRTL----DIENVGITTRHNTFFQMAGNFSFGDYFKRDAIKHAWALLTSSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  R+++TVY +D++A  +W+   G+   +I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPERIWVTVYLDDDDARDIWRDEVGVPESRIQRRGMADNYWSMGIPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+       N +    LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GKEGGPEADEDRYIEIWNLVFMQNERGLGISKDNFEILGPLPKQNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G KY    ++ V  RVI DH R+++ LIAD
Sbjct: 235 ERVAFLLQGVDNVYETDLVRPVIAKAEELSGRKYGAVHDDDVRFRVIADHARTAAMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YP L      IE
Sbjct: 295 GVNPGNDGRGYVLRRLLRRIVRSAKLLGADKPSMREFITVVRDTMAPSYPVLDTDFGRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F KTL  G  L +G            + GD AF L+DT+G P+D+  ++  
Sbjct: 355 TVAVGEETAFLKTLTSGSKLFEGAAESVKASGKSTIGGDQAFALHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + EQR RA+  +        +   +      G T+F G+  L   
Sbjct: 415 EAGLT-VDEEGFRTLMAEQRQRAKDDAQARKHAHADLTVYKELLDRGPTEFTGFHELVS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++ QG+ V  A +GQ VEV+ D++P YAEAGG
Sbjct: 473 ----------------------EAHVLALISQGQRVPVATAGQDVEVILDRSPLYAEAGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G   G G+R+++ DVQK A+ ++VH   V+ G L     ++  +D   R+  +  
Sbjct: 511 QIADLGTLTGPGLRVKVNDVQKIAKKLWVHKVTVQEGQLTEGDVVLAQVDAAWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD +    +T A+ + IE   N+ +A +
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALTEAQKQDIEVVANEAVAAD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T + + + A + GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I 
Sbjct: 631 YSVNTFVTDLDKAKSMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSSQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ E S+ +G+RR+EA  G  +  +L  +   L  L+S LKV    V  RVE + E 
Sbjct: 687 NVTLLGEQSVGSGVRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVER 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKI 820
            R  +    + + Q  +           ++  V  ++      V   +L+ ++  ++ + 
Sbjct: 747 LRVAEKELEQTRAQAVLAAAGTFVDKAQRVGPVLLVADSAPAGVGGNDLRGLVTDIRGRF 806

Query: 821 Q--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                ++ L+G   + K   ++ V +   +    A DL +     +GG G GG+  MAQ 
Sbjct: 807 GTQPAVVALLG-DVDGKVPFVVAVNKAAQELGLAAGDLVKGFGPKIGGRG-GGKADMAQG 864

Query: 878 GGPNGNKADQAIAGVASFL 896
            G + +    A+  V   +
Sbjct: 865 SGSDTSGIAAALDAVRGQV 883


>gi|297588300|ref|ZP_06946943.1| alanine--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297573673|gb|EFH92394.1| alanine--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 873

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/909 (36%), Positives = 510/909 (56%), Gaps = 53/909 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    ++ IR  FL +F + GH ++ S  LIP +D +L+  N+GM P K  FTG++K   
Sbjct: 1   MKDYGLNEIRKKFLNYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ Q+C+R      D+D VG+T RH TFFEMLGNFSFG YFK+ AI  AWD LT E 
Sbjct: 61  DRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKKEAITWAWDFLTNEL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ +  L+ITVY+EDEEA+ +W    G+S ++++++   DNFW + + GPCGPCSEI  D
Sbjct: 117 EVPKDILWITVYEEDEEAYNIWVNEVGVSPERVVKLGKGDNFWEL-DQGPCGPCSEIHVD 175

Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           +G            +EGER++E+WNLVF QF +    +   +   +IDTGMGLER+  VL
Sbjct: 176 RGFEFDPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHPNIDTGMGLERITMVL 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +   N ++I L K +I+  E+++G+KY     N V+ R+I DH+R+ +FLI DG++P+NE
Sbjct: 236 ENADNIFEIGLVKDIIKTIEEISGVKYKENHQNDVSIRIIADHVRAMTFLIYDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            RGYVLRR++RRA  + +LLG  +  +  ++ +      S YPEL + +  I +   +E+
Sbjct: 296 QRGYVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEERDRIVKIANAEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ++F +TLD GL +LD +L      ++ +G+ AFKLYDT+G P+D+ ++++       +D 
Sbjct: 356 KKFQETLDLGLSILDSMLKETD-SDVFSGENAFKLYDTYGFPIDLTKELVGEVNKT-VDE 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + +EEQ+ RAR        G +    +   E    T+F GYD L+           
Sbjct: 414 DEFKKLMEEQKERARGSRNESNMGWSSDKKYG--EGLPETKFDGYDSLKD---------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  I  + E      +GQ   ++ D T FY E GGQ+GD G   
Sbjct: 462 -------------ESEVIEIYGEDE--NNLNAGQMGIILLDCTTFYGEGGGQVGDKGIIY 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K  + +F+H+  V  G L     + + +D  NRR +  NHSATHLLH 
Sbjct: 507 NDNFKAEVYDTKKTGKKVFLHYVKVIEGSLNVGDKVTIEVDELNRRDIMKNHSATHLLHQ 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV+Q GS +  + LRFD+TH + +T  +L+ +E  VN+ IA  +PV    M+
Sbjct: 567 ALKDVVGDHVNQAGSYVDGERLRFDITHFEAVTKEQLEKVEQIVNEKIALGIPVKIDEMS 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E + + GA  L   KY D VRVV +     G +S  LCGGTHV +T +I +L I+SESS
Sbjct: 627 LEQSQSIGARGLFEDKYQDVVRVVQM-----GDYSKELCGGTHVKTTSDIQMLKILSESS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVE---EIWEEYRKLQ 771
           + AG+RRIEAITG+    +L  +D  + ++   LK  ++  +  R+E   E  +E +K  
Sbjct: 682 VAAGVRRIEAITGRAVYKYLNERDSLIDTVKHSLKASNEDEITRRIEMNTEEIKELKKKL 741

Query: 772 LIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                + L  N++ +      I         +S +D+   +   + ++ K++ G+++L  
Sbjct: 742 KDITNKDLSSNIDSVIEDAVDIDGTKVCVFALSGLDNNSFRDFGENIKSKLEDGVVILAN 801

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            S E K S + +VT+  + +   A D+ R  AKV  GG GGGR   AQ+G  + +K D+A
Sbjct: 802 -SDESKVSFITLVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDEA 859

Query: 889 IAGVASFLK 897
           +      +K
Sbjct: 860 LQKGIETVK 868


>gi|168000843|ref|XP_001753125.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695824|gb|EDQ82166.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 927

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 495/919 (53%), Gaps = 65/919 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FLEF+   GH++LPSSSL+P +DPT++ T +GM+ FK IF GQ    Y   TT QK
Sbjct: 39  IRKRFLEFYAARGHKVLPSSSLVP-DDPTVLLTIAGMLQFKPIFLGQVPRSYPCATTTQK 97

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            VR     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI  AW+L T+EF L   R++
Sbjct: 98  VVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKRQAIAWAWELATQEFKLPLERVW 153

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V+++D+EAF +W+   G+  ++I R+   DNFWS   TGPCGPCSE++FD      G 
Sbjct: 154 VSVFEDDDEAFAIWRDEVGVPVERIKRMGAEDNFWSSGATGPCGPCSEMYFDFHPE-RGT 212

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                 +  R+IE +NLVFMQ+ + +  +   L   +IDTG+GLERMA +LQ+  NNY+ 
Sbjct: 213 DDADLNDDSRFIEFYNLVFMQYNRTDDGQLEPLKNKNIDTGLGLERMAQILQQVPNNYET 272

Query: 247 DLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           DL   +I  +  +  + Y+  +       +VI DH R+  +LI+DG+ P+N GRGY++RR
Sbjct: 273 DLIYPIIARAAALANVDYQSADDRVKTYLKVIGDHTRAVVYLISDGVYPSNIGRGYIVRR 332

Query: 304 IMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           ++RR +   RLLG             +  +            P + Q K+ I   L+ E+
Sbjct: 333 LIRRVVRMGRLLGIRGDGQGNQEGAFLPTVAEVAVAMSKDVDPNVEQQKIKIYNELKREE 392

Query: 356 ERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            RF +TL++G  LL+ +L+            L+G   F+LYDT G P++I +++   RG+
Sbjct: 393 LRFVQTLEKGEKLLEELLAEALEKRGTDTPCLSGKDVFRLYDTFGFPVEITEEVASERGV 452

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D+  F   +E QR +++A    +           +  +   T+F+GYD L       
Sbjct: 453 T-VDLAGFESEMEIQRKQSQAAHNVIKLAVG-GAAQEMLAQVPETEFLGYDDLTS----- 505

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             SS + AI+  GE + EA  G++VE++ D+TPFYAE+GGQ+GD
Sbjct: 506 ------------------SSSILAILANGEALGEASEGEEVELLLDRTPFYAESGGQVGD 547

Query: 531 TGCAIGDGIRLQ---ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G     G   +         K  G F H  +V+ GI++  + +   +D   R +  I+H
Sbjct: 548 HGYLRVFGGDSEAVVKVKDVVKEAGRFRHIGVVQDGIVKVGLGVEAEVDPVLRTRAQIHH 607

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LGS VSQ GS ++ D LRFD    + +T AE+  +E  VN+ I   +
Sbjct: 608 TATHLLQAALKNVLGSDVSQAGSLVSFDRLRFDFNLPRAMTDAEINKVEMLVNEWIGMGV 667

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV +  M    A   GA A+ G KY ++VRV+SV        S  LCGGTHV +  EI  
Sbjct: 668 PVTSEEMAIAAAKEKGAIAMFGEKYGEQVRVISVPG-----ISMELCGGTHVRNIAEIRG 722

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           L I+SE  I +G+RRIEA+ G     ++  +D  +K L++ LKV   ++ GRV  + EE 
Sbjct: 723 LKIMSEQGIASGVRRIEAVAGNAFIEYINARDAVVKQLSASLKVKADDLAGRVVGLQEEV 782

Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIAD--VNFMSHIISEVDSKELKSVMDALQKKI 820
           R  +   A  +++L V            I D     +   + ++D++ LK+  + L  K+
Sbjct: 783 RASRNEAAALRVELAVAKAEALLSTATSIGDSSTRVLVASLDKIDAESLKAAAEHLLAKL 842

Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                +++     + K S++   +  ++     A       AK+ GGGG GGRP+ AQ+G
Sbjct: 843 GDPAAVVVGSSPGDGKVSLVATFSPSVVKQGIQAGKFVGTIAKICGGGG-GGRPNFAQAG 901

Query: 879 GPNGNKADQAIAGVASFLK 897
           G    K D+A+      LK
Sbjct: 902 GRQPEKLDEALEKAREDLK 920


>gi|34540951|ref|NP_905430.1| alanyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|41018164|sp|Q7MV54|SYA_PORGI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|34397266|gb|AAQ66329.1| alanyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 876

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 484/918 (52%), Gaps = 76/918 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF   GH+++PS+ ++   DPTLMFTN+GM  FK+I  G  +  Y  
Sbjct: 1   MLTSKEIRESFKTFFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTEAKYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVTVLGL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D +RLY TV++         D EA   W +   L  ++II    +DNFW M +TGPCGPC
Sbjct: 121 DPQRLYATVFEGNPEEGLDRDNEAASYWAQF--LPEERIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           GL   ++   + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADASLTPLPHKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI+    +TG+ Y  +  + +  RV+ DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIRTLATMTGIGYGEDSTSDIAMRVVADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLHCREAFMYRLLPTLIDTMGDAYPELQAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI   ++ E+E F +TL+ G+ LL+  ++        +L+G  AF+LYDT G PLD+   
Sbjct: 359 LISRVIKEEEESFLRTLETGIRLLEKKIADNKATGSTVLDGVAAFELYDTFGFPLDLTAL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +D   F+  +++Q+ RAR       +      W  L+E  G ++F GYD  
Sbjct: 419 ILSENGMT-VDESGFDTEMQKQKERARNA-----AAVEAGDWVVLRE--GESKFSGYDFT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +                              +  +VV   TPFYAE
Sbjct: 471 ETETEILRYRQVKQKNK----------------------------EYFQVVLSDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD+G  I +          K+   + VH   +++    T  + V  I+   RRQ 
Sbjct: 503 MGGQVGDSGQLIDESGVAYDIFDTKRENNLSVHL--MKKLPESTTDTFVARINQDKRRQA 560

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LG+HV Q GS ++P+ LRFD +H   ++  E++ +E+ V++ I
Sbjct: 561 EANHTATHLLHEALREVLGTHVEQKGSFVSPEVLRFDFSHFGKMSPEEIRKVEELVSERI 620

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             +      R +   +A A GA AL G KY + VRV+          S  LCGGTH+ ST
Sbjct: 621 RADFQREEFRDVPIAEAQAMGAMALFGEKYGEEVRVLKYGS------SVELCGGTHIPST 674

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I    IV+ESSI +G+RRIEA+TG  A   +  +++ L ++      +  N++  +++
Sbjct: 675 GMIGAFRIVTESSIASGVRRIEAVTGIGAERFIYEKEDILLAVKELFNNNP-NLIKSIKK 733

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVDSKELKSVMDAL 816
           + EE   L+   A  K +  ++        DV       F+   I  ++++  K +   +
Sbjct: 734 MLEEDASLKKQIADMKHERMLKFKKSLLEQDVRRRGIRLFLFQEI--MEAETAKDIAFQI 791

Query: 817 QKKIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM 874
             ++Q   +++ G ++   K ++ +++++DL +   +A  L R +AK + GG GGG+PH 
Sbjct: 792 AGELQESFVLIAGTTEGGEKCALTVMLSKDLTEGGMDAAKLVRSAAKHIQGG-GGGQPHF 850

Query: 875 AQSGGPNGNKADQAIAGV 892
           A +GG N      AI  +
Sbjct: 851 ATAGGKNPKGLPAAIQQI 868


>gi|326336584|ref|ZP_08202753.1| alanine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691249|gb|EGD33219.1| alanine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 877

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/925 (35%), Positives = 483/925 (52%), Gaps = 78/925 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP  + V
Sbjct: 1   MTSQEIRQQFLKFFESKGHVIVPSAPMVIKNDPTLMFTNAGMNQFKEYFLGNAKPKQKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI  AW+LLT+ + + 
Sbjct: 61  VDTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAISWAWELLTEVYRIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++         D+EA+ +WK+   ++ D I+     DNFW M + GPCGPCS
Sbjct: 121 KENLYVTVFEGSPEEGVPLDQEAYDIWKER--IAEDHILLGNKKDNFWEMGDQGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    + +  + IEIWN VFM+F ++       LP  ++DTGMG
Sbjct: 179 EIHVDIRSEEEKAEIPGRDLVNRDHPQVIEIWNNVFMEFNRKADGSLEKLPAHNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+  VLQ+K +NYD D+F  LI   E++T  KY              V  RV+ DH+R
Sbjct: 239 FERLCMVLQKKQSNYDTDVFTPLIHKVEEITKSKYSNGTNVTPEQEEINVAIRVVSDHIR 298

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +F IADG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L+  L  +MGS +PE
Sbjct: 299 AVAFAIADGQLPSNNGAGYVIRRILRRAIRYGFTFLGQKEPFIYKLVETLSKQMGSTFPE 358

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L + + LI   ++ E+  F +TL++GL++LD ++ +   D+ L+G  AF+LYDT+G P D
Sbjct: 359 LEKQQFLIMSVIKEEEASFLRTLEQGLLMLDVMIQN-NPDKQLSGSKAFELYDTYGFPKD 417

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   IL  +G+  +D   F + L++Q+ R+RA      +      W  L++     +FIG
Sbjct: 418 LTALILSEKGMT-LDERGFEENLQKQKERSRAA-----AQVKADDWVILRDDEEE-EFIG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L+    + + RK                           VE    G   ++VF+ TP
Sbjct: 471 YDTLKAIVRLVKYRK---------------------------VESQKDGTLYQLVFNTTP 503

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ+GD G        L      KK   + +H A  E             +   +
Sbjct: 504 FYPEGGGQVGDKGTLQAANGELIYILDTKKENNLIIHIA--EHLPENLNDPFQAEVASLS 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R     NHSATHLLH AL  +LG+HV Q GS + P+ LRFD +H   +T  EL+ +E  V
Sbjct: 562 RTLAEANHSATHLLHQALREVLGTHVEQKGSHVAPESLRFDFSHFAKLTQEELRKVERLV 621

Query: 640 NDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I + +P+   R +    AI SGA AL G KY D VR++          S  LCGGTH
Sbjct: 622 NKRIFEKIPLEEHRNIPIRQAIESGAMALFGEKYGDHVRMIQFGE------SKELCGGTH 675

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG+I    I+SE ++ AGIRRIEAIT   A  +   Q+  L+ + + LK +    + 
Sbjct: 676 VKNTGDIWFFKIISEGAVAAGIRRIEAITSAGALKYFADQEALLEGIKASLK-NPQEPIK 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVM 813
            +  + EE  +L     + K +   +     K     I  +  ++  +  +D   LK + 
Sbjct: 735 SIINLQEENAQLHKEIEQLKREQAKQLKEGLKKEFIPINGIQCLTKQL-NLDLATLKDLA 793

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR 871
             L ++++   I+   + +  KA +L  + ++L      +A  + R   K + GGG GG+
Sbjct: 794 FMLGEEVKDAFILFGTVQEGGKAMLLCYINKELTKSKSLDAGKIVRELGKYIHGGG-GGQ 852

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P  A +GG       +A+  V   L
Sbjct: 853 PFFATAGGKKPEGIIEALEKVKFLL 877


>gi|68536115|ref|YP_250820.1| alanyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|83305843|sp|Q4JVF5|SYA_CORJK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68263714|emb|CAI37202.1| alaS [Corynebacterium jeikeium K411]
          Length = 887

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/921 (35%), Positives = 479/921 (52%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F+E F K GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P ++  
Sbjct: 1   MQTHEIRQRFIEHFTKAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFENG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGAYFKEGAITHAWTLLTNPVE 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
                LD  RL++TV+ +D+EA ++W K  G+   KI R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGLGLDPERLWVTVFTDDDEAAEIWNKKIGVPEHKIQRLGMEDNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFIL---PKMSIDTGM 228
           I++D+G    G   G   +  RYIEIWNLVFM+ E+     K    I+   PK +IDTG+
Sbjct: 176 IYYDRGPE-HGQEGGPIVDDTRYIEIWNLVFMENERGEGLGKGNFEIVGKLPKKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ+  N Y+ DL + +I  +++VTG KY  +  N V  RVI DH R+   L+
Sbjct: 235 GIERVACILQDVDNVYETDLLRPVIDVAQEVTGAKYGADQANDVRFRVIADHSRTGLMLM 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  ARLLG T   +   +  +   M  +YPE+ +    
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETLEKFMDTVRETMTPSYPEIAENYER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E++ F KTL+ G  + D       +   + + GDVAF L+DTHG P+D+ Q++
Sbjct: 355 IRAVALAEEKSFLKTLESGSQMFDNWAHEAKERGEDTVPGDVAFSLHDTHGFPIDLTQEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
                L  +DI  F++ + EQ++RA+A +     G  ++  +        T F GY+ L 
Sbjct: 415 AAEADLK-VDIDGFHELMAEQKARAKADNNAKKLGHVDQTIYRPFVDNHPTVFTGYENLA 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  I++ G +VE A  G   +V+ D+TPFYAEA
Sbjct: 474 D-----------------------EASVLGIIRDGALVETAPEGAAAQVILDRTPFYAEA 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G         ++ DVQK  + ++VHH  V  G L     +  T+D   R Q  
Sbjct: 511 GGQMADRGEMTSTSGAARVEDVQKVGKKVWVHHVTVSGGELAVGQKVQATVDKAWRHQAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS THL+H AL  +LG    Q GS   P  LRFD  + + +T  +L  IE+  N  + 
Sbjct: 571 QAHSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYGEQLTEHQLNQIEEIANGAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGG HV  + +
Sbjct: 631 SDYQVNTIETSLEEAKAMGAMALFGENYGSEVRVVEI----GGPFSMELCGGIHVEHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +  + ++ ESS+ +G+RRIEA TG  +   L  +   +  LA+ LK     +  R++ + 
Sbjct: 687 VGPISVLGESSVGSGVRRIEAYTGMDSFRFLSTEKSLVSGLATSLKTPSEELPDRIDALT 746

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    + + Q     +         I +V  ++  +   V + +L+++    + 
Sbjct: 747 AKLKAAEKQIQQLRAQQLQGQVGQLVEKAETIGEVKVLAEQLPEGVAAGDLRTLAMDAKN 806

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++ S   +++   +  EK   V       +     A +L +   + +  G GGG+P MAQ
Sbjct: 807 RLGSEPAVVVFASVDGEKVPFVAAANDAAVDKGIKAGELVKTFGEKVA-GRGGGKPAMAQ 865

Query: 877 SGGPNGNKADQAIAGVASFLK 897
             G +       I  V S L+
Sbjct: 866 GSGSDAAGISAGIEAVKSALR 886


>gi|291297318|ref|YP_003508716.1| alanyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290472277|gb|ADD29696.1| alanyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 883

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/919 (38%), Positives = 517/919 (56%), Gaps = 62/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--P--- 56
              + IR  FL+FF+  GH  LPS S++P +DPTL+F N+GM P K  F G++   P   
Sbjct: 1   MKTAEIREKFLQFFESKGHLRLPSFSVVPQDDPTLLFINAGMTPLKPYFLGKKPVFPGHE 60

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +  VTT QK VR G    D++NVGRTNRH T FEMLGNFSFG YFK+ AI+ AW+ LT
Sbjct: 61  GEWYRVTTCQKSVRTG----DIENVGRTNRHQTVFEMLGNFSFGDYFKKEAIEWAWEFLT 116

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGP 168
             K   LD  R+Y+T+Y +D+EAF+ W +  G+  +KI R   ++NFW     +    GP
Sbjct: 117 DPKWLGLDPTRIYVTIYKDDDEAFEHWTR-VGVPPEKIHRFDADENFWPQNAPTKGPNGP 175

Query: 169 CGPCSEIFFDQGECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           CGPCSEI++D+G             + E  R++E+WNLVF Q+++++      LPK +ID
Sbjct: 176 CGPCSEIYYDRGPAFGSDTWADYYETRESNRFVELWNLVFPQYDRKDGGVLEPLPKPNID 235

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFL 285
           TGMGL R+A VLQ+ T+ Y+ D F+ LI    ++TG+ YEG + V HRVI +H R+ +F+
Sbjct: 236 TGMGLARVAMVLQDVTDFYETDEFQPLIAKIVELTGISYEGPSSVAHRVIAEHARAVTFI 295

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ++DG+  +N GRGYV+RR++RRA+ +  LLG  EP M  L   +   MG  YPEL +   
Sbjct: 296 LSDGVHFSNTGRGYVVRRLLRRAVRFGYLLGLREPFMYRLAEVVAQVMGGVYPELKENLE 355

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            +++ ++ E+E+F +TL+ G+  LD +L++L   + L G  AF LYDT+G PLD+  +I 
Sbjct: 356 GVQKQIKIEEEQFLRTLESGIKRLDAMLANLKPGDTLAGRDAFTLYDTYGFPLDLTIEIA 415

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLL 463
              G   +D   F QALEEQ+ RARA +         + +   +L   YG T+F+GY+ L
Sbjct: 416 SEHG-VQVDTEGFEQALEEQQERARAAAAFSKELFKRSNEALAALAADYGGTKFVGYESL 474

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                     + VK ++   + +EEA +G +V+VV D+TPFYAE
Sbjct: 475 E-----------------------AQAQVKLLLVGEQTIEEAPAGTEVQVVLDRTPFYAE 511

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G    +G   +++  QK  +GIF+H A VE G L+   ++   +D   R   
Sbjct: 512 GGGQVGDAGVLEWEGGWARVSTTQKNPDGIFLHIARVEEGTLKAGSTVRALVDMHRR-DT 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LGSHV Q GS + PD LRFD +  +PI   +L  IE  VN  I
Sbjct: 571 EKNHTATHLLHAALRAVLGSHVQQKGSYVGPDRLRFDFSQFEPIAPRDLARIELLVNRWI 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             + PV       E+A   GA AL G KY D VRVVSVE     V S  LCGG HV  TG
Sbjct: 631 QADFPVSYTYKPLEEARKEGAMALFGEKYGDVVRVVSVEGAIDNVTSKELCGGCHVRRTG 690

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    IV+E S+ AG+RRIEA+TG  A  ++    ++L  L+  L  +  +++ RV ++
Sbjct: 691 EIGAFVIVAEESVAAGVRRIEALTGTGATQYVREMLDRLGGLSRELGTTPEHLLERVNKL 750

Query: 764 WEEYRKLQLIHAKRKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            +E +  +    K KL L           +S  +     +++  +  +++  L+   D L
Sbjct: 751 QDELKAREKEIEKLKLDLARAQLGGSAAGISLKEANGYRYLAVKLEGLEAGALRGAADEL 810

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
             + Q+ ++ +          +++ V++  L+R  +A  + +  + V GG GGG    +A
Sbjct: 811 LDRHQADLVAVGSGQ-----HLVVKVSKKALERGLDAGAVMKKLSAVAGGRGGGRGA-LA 864

Query: 876 QSGGPNGNKADQAIAGVAS 894
           Q GG +  KA  A+  V  
Sbjct: 865 QGGGFDLEKAFGALEQVLE 883


>gi|330998231|ref|ZP_08322057.1| alanine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329568923|gb|EGG50721.1| alanine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 871

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/919 (34%), Positives = 473/919 (51%), Gaps = 76/919 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F++FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G      +  
Sbjct: 1   MTANEIRDSFVKFFESKGHLIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNRPATSKRC 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ L     +D
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVDVLKID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY TV++         D EA   W+K   L AD II    +DNFW M  TGPCGPCS
Sbjct: 121 KSNLYATVFEGSPEEGLERDNEAASYWEKF--LPADHIINGNKHDNFWEMGATGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +++    IEIWNLVFMQ+ ++  Q    LP   IDTGMG
Sbjct: 179 EIHIDLRPEEEKAKVPGRELVNKDNPLVIEIWNLVFMQYNRKADQSLEPLPAKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+  V+Q K +NYD D+F+ +I+    ++  +Y  +    V  RV+ DHLR+ +F IA
Sbjct: 239 FERLCAVMQGKRSNYDTDVFQPIIRVIGDLSDCRYGEDPKKDVAMRVVADHLRTIAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP N   GYV+RRI+RRA+ YA   LG  E  M  LLP L  EMG +YPEL   K+L
Sbjct: 299 DGQLPGNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLPVLVQEMGKSYPELEAQKVL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I + ++ E++ F +TL+ G+ LLD V++        +++G  AF L+DT+G PLD+ + I
Sbjct: 359 ISKVMKEEEDSFLRTLETGIRLLDRVMAETRASGKTVIDGVEAFTLFDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               G+  +D  +F+  +++Q+ RAR       +      W  ++E  G T+F G+D   
Sbjct: 419 CRENGMT-VDEETFHAEMQKQKERARNA-----AAVETGDWVVVRE--GETEFKGWDYTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +K                                ++V D TPFYAE 
Sbjct: 471 HECHILRYRKVTQKKQTF----------------------------YQIVLDYTPFYAEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G    +   ++I D +++           +      E   +  +D   R    
Sbjct: 503 GGQVGDRGVLCSEHETIEIVDTKRENNLPVHI---AKTLPEHPEADFMACVDTDLRAASE 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ THLL  AL T+LG HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I 
Sbjct: 560 ANHTCTHLLDQALRTVLGEHVEQKGSLVTPEYLRFDFSHFQKVTDEQLREVERIVNAKIR 619

Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           ++LP    R M  E A   GA AL G KY DRVRVV          S   CGG H  STG
Sbjct: 620 EDLPLQDHRDMPIEKAKELGAIALFGEKYGDRVRVVQFGD------SVEFCGGCHAKSTG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I ++ I+SESS+ AGIRRIEAITG++  + L    +    L +    +  +V   + + 
Sbjct: 674 RIGMVKILSESSVAAGIRRIEAITGEKVENMLYTLQDLTNELRTLFNNAP-DVKAAILKS 732

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE   L+    +   +   +  +        +  V     I+  + +  +K +   L+ 
Sbjct: 733 IEENAILKKQIEESMKEKAAQAKARIVSQAAIVNGVTLYRSILP-MPADLVKDMAFQLRN 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             +  ++++  +  E K  +    +++++     N   + R +AK++ GG GGG+PH A 
Sbjct: 792 GAEDALVIIGSLH-EGKPMLTAAASDNMVKAHGMNVGKIVREAAKLIQGG-GGGQPHFAT 849

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+      
Sbjct: 850 AGGKNADGLSAAVDKFVEL 868


>gi|297155787|gb|ADI05499.1| alanyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 889

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/907 (35%), Positives = 497/907 (54%), Gaps = 62/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLRFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT      
Sbjct: 60  VSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTTSVEEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY ED+EA ++W+ + G+ A++I R+    NFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYKEDDEAERIWRDVIGVPAERIQRLGMGPNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +   P        +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + +I  + ++TG+ Y    ++ V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVHNMYETDNLRAVIDKATELTGVAYGAGHDSDVSLRVVADHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   R+LG TE ++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRILGATELVVGELVDVVLKTMGQQYPELLTDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  +LD  +  +      +L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTDTKAAGSTVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G+T F GY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADTSGSTVFTGYTDTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGLPSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D+G   +  G  +++ DVQ+   G+ VH   V+ G +         ID + RR ++
Sbjct: 511 GQLADSGRIRLDSGAVVEVRDVQQPVPGVSVHKGTVQVGEVTVGAGAYAQIDIKRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +  A L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGAVLTDVEQKINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ E+A   GA A  G KY DRVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVTAEVMSMEEAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSRLTDLVKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + ++ +    + + +  ++           +  V  ++  +     + +L+ ++  ++ 
Sbjct: 746 AKLKEAEKEIERFRAEKVLQAAAGLAAGAKDVRGVALVTGQVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ     ++ L  ++  +  +V+            A DL R +AK LGGGG GG+P +A
Sbjct: 806 RIQGDRPAVVALFSVANGRPVTVIATNEAARERGLKAGDLVRAAAKALGGGG-GGKPDVA 864

Query: 876 QSGGPNG 882
           Q GG N 
Sbjct: 865 QGGGTNP 871


>gi|256826954|ref|YP_003150913.1| alanyl-tRNA synthetase [Cryptobacterium curtum DSM 15641]
 gi|256583097|gb|ACU94231.1| alanyl-tRNA synthetase [Cryptobacterium curtum DSM 15641]
          Length = 878

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/914 (36%), Positives = 492/914 (53%), Gaps = 56/914 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--PVYQ 59
              + IR  +L +F+  G + +PSSSLIP +DP+L+ T++GMV FK  F  Q+     Y 
Sbjct: 1   MTTAEIRERYLRYFESKGCKRMPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAPYI 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TT QKCVR     ND+D +G   RH +FFEMLGNFSFG YFKE     A D    E  
Sbjct: 60  GTTTAQKCVRT----NDIDLIGTDGRHLSFFEMLGNFSFGAYFKEEMCAWALDFSLNELG 115

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + +LY TVY++D+E  ++WK + G+ A  I ++   DNFW    TGPCGPCSE+++DQ
Sbjct: 116 LPKEKLYFTVYEDDDETIEIWKNL-GIEASHISKMGEEDNFWRAGPTGPCGPCSELYYDQ 174

Query: 180 GECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G  +  G P      E +R++E WN VF Q++ Q       LPK +IDTGMGLERMA +L
Sbjct: 175 GPEVGCGRPDCAPGCECDRFLEYWNCVFTQYDAQEDGTLKPLPKKNIDTGMGLERMAAIL 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q  ++N+D D+ + L+   E+++G  Y     +    RV+ DH RS +F+IADGILP+NE
Sbjct: 235 QSVSSNFDTDVLRGLVAVGERLSGRSYGASDADDRALRVMADHSRSMTFMIADGILPSNE 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+    LLG     +   +  +   MGS Y EL++ + LI+  + SE+
Sbjct: 295 GRGYVLRRLLRRAVMKGHLLGIEGAFLGSFVDEIIQVMGSEYAELVENRDLIKRVVASEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERFG TL +G   L   L  L    +L+G+VAF L+DT+G PL++ Q+I    G   +D+
Sbjct: 355 ERFGSTLRQGRAYLQEALDGLS-GGLLSGEVAFTLHDTYGFPLEVTQEICAESG-IEVDV 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTT---EKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
             FN  ++EQRSRAR  +           +    +L E+ GAT F GYD           
Sbjct: 413 EQFNHLMDEQRSRARRATQDDAEAAWSTYDGSMAALLEQVGATVFTGYDE---------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N  +  V+A+++ GE V    +G+   VV D++PFYAE GGQ+ DTG
Sbjct: 463 -------------NKSAGHVRALLRDGESVCTLSAGEAGCVVLDRSPFYAEMGGQVADTG 509

Query: 533 CAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                      ++TDV+    G+ VH+  VE+G    +  ++ +ID   R ++  NH+AT
Sbjct: 510 TITSPDGASCARVTDVKAPESGLIVHYVQVEQGSFTIDDEVIGSIDVARRERIRRNHTAT 569

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH  LS +LG+HV Q GS + P+ LRFD TH + I  A L  IE+  N +I +  PV 
Sbjct: 570 HILHKVLSEVLGNHVKQAGSYVAPNRLRFDFTHFEAIDRATLDEIENVANRVIMEAHPVH 629

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T     ++A   G  AL G KY + VRVV ++       S  LCGGTHV +T EI  + I
Sbjct: 630 TYETTLDEAREQGVTALFGEKYGEVVRVVDIDG-----FSRELCGGTHVRNTSEIGFVKI 684

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE S  A +RRIEA+T   A ++     ++L+  A+   V   +V  R     E+ + L
Sbjct: 685 VSEQSTGANMRRIEAVTSFDALAYTDRMRDELRQTAAVFGVPLFDVNERAAIATEQLKTL 744

Query: 771 QLIHAKRKLQLNVEDL--SCHKI-----ADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           Q    + K      D+     K      A    + + +  +D+  L++  D  +  +   
Sbjct: 745 QAQAKRAKKIAVASDIRTLVDKAISTSRAGYPVLIYRLDGMDAGSLRNTWDIARAHLGET 804

Query: 824 IIMLVGISKEKKASVL-IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             +++    E K  ++       +   F+A  + +  A  + GGG GG+P MAQ+GG + 
Sbjct: 805 CAVVLASDNEGKPLIMAAGTDAAVAAGFDAGAIIKEVAGAISGGG-GGKPSMAQAGGKDP 863

Query: 883 NKADQAIAGVASFL 896
              D+A+      L
Sbjct: 864 AGLDEALDIARRML 877


>gi|311739532|ref|ZP_07713367.1| alanine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305348|gb|EFQ81416.1| alanine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 897

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/925 (35%), Positives = 487/925 (52%), Gaps = 66/925 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61
              IR  F + F  +GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     
Sbjct: 6   THEIRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFAKGLA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 65  TSIQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGQYFKEGAITNAWTLLTGSVDEG 120

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 121 GFGLDPDRLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGIPGPCGPCSEIY 180

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G   +  RY+EIWNLVFMQ E+         +    LPK +IDTG+G+
Sbjct: 181 YDRGPEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGIGKGNFEIVGELPKKNIDTGLGI 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLI 286
           ER+A +LQ+  N Y+ DL + +I  +E++TG  Y       + +  RV+ DH R+   LI
Sbjct: 240 ERVACILQDVDNVYETDLLRPVIDVAEELTGATYGDKASHEDNIRFRVVADHSRTGMMLI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  A+LLG     M   +  +   M  +YPE+   +  
Sbjct: 300 LDGVTPGNEGRGYILRRLLRRIIRSAKLLGAKGATMERFMNTVMDTMTPSYPEIADNRER 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDI 400
           I     +E++ F KTL+ G  L D  +  L         ++L G+ AF+L+DT+G P+D+
Sbjct: 360 ILRVAVNEEKAFLKTLESGTRLFDDAVQELKSTSRAKTAKVLPGEKAFELHDTYGFPIDL 419

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D+  FN A+ EQR RA+A +     G T+   +        T F G+
Sbjct: 420 TLEMAQEAGLE-VDMDGFNDAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGF 478

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           + L                          + V  +V+ GE V++   G++VEV+ D TP 
Sbjct: 479 EELTSD-----------------------ARVIGLVRGGEKVDQVREGEQVEVILDHTPL 515

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAEAGGQ+ D G  +     L++ DVQK  + ++VH A V  G L   MS+   +D Q R
Sbjct: 516 YAEAGGQMADRGRIMAGESLLEVNDVQKIGKKLWVHKATVTAGGLDLGMSVEAAVDEQWR 575

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              +  HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++ A+L+ I    N
Sbjct: 576 HGATQAHSATHLIHAALRQVLGPTAVQAGSMNRPGYLRFDFNYTEQLSQAQLEEIALITN 635

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  N  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGGTHV+
Sbjct: 636 QAIDSNFAVNTIETSLEEAKAMGAMALFGENYGKEVRVVEI----GGPFSIELCGGTHVA 691

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S+ EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV   ++  R+
Sbjct: 692 SSAEIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPERI 751

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELKSVMD 814
            ++ E+ +  +      + Q      S        I     ++  +       +L++V  
Sbjct: 752 AQLSEKLKAAEKEIETLRKQQLAARASEFVGAAKDINGFKVIALTLPEGTTGGDLRTVAT 811

Query: 815 ALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            L+ ++  +  +I+L    K K   +     + +     + D+ +   + +  G GGG+P
Sbjct: 812 DLRNRLREEEAVIVLGAEDKGKFPFIAAATDKAVGRGVKSGDIVKEFGQYV-DGRGGGKP 870

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
            MAQ  G     A++  A V   L+
Sbjct: 871 DMAQGSGSTAAGAERGFAAVKDMLE 895


>gi|33519641|ref|NP_878473.1| alanyl-tRNA synthetase [Candidatus Blochmannia floridanus]
 gi|81666648|sp|Q7VQG3|SYA_BLOFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33517304|emb|CAD83689.1| alanyl-tRNA synthetase [Candidatus Blochmannia floridanus]
          Length = 891

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/914 (37%), Positives = 515/914 (56%), Gaps = 53/914 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            ++  +R  FL+FF K  H+++PSSSL+P ND TL+FTNSGM  FK+IF G  KP Y+ V
Sbjct: 3   KSIDVVRQEFLDFFHKQEHQVVPSSSLVPKNDQTLLFTNSGMNQFKDIFLGLVKPSYKRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
            T Q+C+RAGGKHNDL+NVG T  H TFFEMLGNFSFG YFK+ AIQ AW+LLT    F 
Sbjct: 63  VTAQRCMRAGGKHNDLNNVGYTECHLTFFEMLGNFSFGDYFKDDAIQFAWELLTDSNWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + ++++T + ED+E++ +W K  G+S  +I++I          DNFW M   GPCGPC
Sbjct: 123 LSKDKIWVTTHIEDDESYNIWVKQVGISTKRIVKIGNKNSDLYDSDNFWQMGNIGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G  + G  PG  +  G RYIEIWNLVFMQF +Q       LP +S+DTGMGLE
Sbjct: 183 SEIFYDFGSDLKGKPPGYMQGLGSRYIEIWNLVFMQFNRQLNDRLIDLPMLSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  +LQ   +NY ID+FK+LI     +  +K E  N  +  VI DH+R+  FLI DG++
Sbjct: 243 RITAILQGVHSNYLIDVFKNLIVDISNIMKVK-EYINNRSLYVIADHIRACVFLIKDGVV 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEG+GYVLRRI+RR++ + R LG  +  +  L+  +   M      L   K LIE+ L
Sbjct: 302 PSNEGQGYVLRRIIRRSVRHGRKLGVNDIFLYKLVNLVIVHMNYVSNILYDQKDLIEQIL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
            +E++ F  TL +GL LL+  L +L +D+IL+G++AF+LY T+G PL++ +DI C R + 
Sbjct: 362 FNEEKLFNNTLKKGLELLEKSLKNLNQDKILSGEIAFQLYTTYGFPLELTKDICCERNIK 421

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D + F+Q +  +R  ++  S    +         L      + F+GY           
Sbjct: 422 -VDQLEFDQIMLTERRNSKRLSQFHKNFNN----IILSSYAKTSTFVGY----------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGD 530
                             S + A++Q  E++ +     Q+  V+ D TPFY E+GGQ+GD
Sbjct: 466 ------------KCFSCQSKIIALLQDNELINKMCDVDQESMVILDITPFYGESGGQIGD 513

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G   G+    ++ + +K    I VH  ++  GI      +   ++   R+ +S+NHS+T
Sbjct: 514 SGYLKGECGVFKVKNTKKYG-QIIVHIGVLISGIFLIGEQVFAQVNRLKRKDISVNHSST 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILGSHV+Q GS I     RFD +H   IT  ++  +E+ +N  I  NL V 
Sbjct: 573 HLLHSALLKILGSHVTQQGSLINDKYFRFDFSHYNAITITQINEVENLINQQIWDNLLVT 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM  E A   GA  LL  +Y ++VRV+ +     G  S  LCGGTHVS+T EI L  I
Sbjct: 633 ENIMLMESARNIGAIMLLHKQYTEKVRVIQI-----GDCSIELCGGTHVSNTNEIGLFII 687

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
             E  I +G+RRIEA+T   A S +  + + ++++A   +    N++  + E    Y KL
Sbjct: 688 TKEFGIGSGVRRIEAVTKNAALSVIQNKKKLIQNIAQIAQSDDVNLLNVIHEFKARYEKL 747

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                    +  ++ +       + I +V  + + +  ++S  L  ++  L+  +QSGI+
Sbjct: 748 DREIKLLNSKQEIQKVLSLVREVYYIKNVRVLVNHVKNMESSSLFKMVKLLKHYLQSGIV 807

Query: 826 MLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +L+ I K   A ++I +T+DL++  R  A+DL +   + +  G GGGR   AQ    N  
Sbjct: 808 VLINIRKNNIAHIVISITKDLVECNRIYAIDLIQYIIRSVKNGKGGGRFDFAQLNINNVK 867

Query: 884 KADQAIAGVASFLK 897
              + +  + S L 
Sbjct: 868 NVSELVIQIQSLLN 881


>gi|327402220|ref|YP_004343058.1| alanyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
 gi|327317728|gb|AEA42220.1| alanyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
          Length = 871

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/930 (36%), Positives = 502/930 (53%), Gaps = 95/930 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             V  IR  F +FF   GH+++PS+ ++  NDPTLMFTN+GM  FK+ F G   P  + V
Sbjct: 1   MTVHEIRKQFFDFFASKGHQIVPSAPMVVKNDPTLMFTNAGMNQFKDFFLGNAVPKNRRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+ + + 
Sbjct: 61  ANSQKCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKEEAITWAWELLTEVYKIP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++ DE        E++ +WK+   ++ D+II  +  DNFW M +TGPCGPC+
Sbjct: 121 KDRLYVTVFEGDEKDGVPKDQESYDIWKRF--IAEDRIIMASKKDNFWEMGDTGPCGPCT 178

Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +E+  + IEIWN VFMQF ++       LP   +DTGMG
Sbjct: 179 EIHVDNRPATERAKEDGKKYVNEDHPQVIEIWNNVFMQFNRKADGSLEPLPATHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
           LER+A  LQ+KT+NYDIDLF+ LIQ  EQV+G KY       +  RVI DH+R+ +F IA
Sbjct: 239 LERLAMTLQDKTSNYDIDLFQTLIQHMEQVSGKKYGENETTDIALRVIADHVRAIAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L   L   MG  + ELI+   L
Sbjct: 299 DGQLPSNTGAGYVIRRILRRAVRYGYQTLGLKEPFLSGLSVVLGKVMGDPFSELIKQGEL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDI 404
           +E+ +R E+  F +TL++GL  +D +++     ++ IL G   F+LYDT G P+D+   I
Sbjct: 359 VEKVIREEELSFFRTLEQGLKRMDNLIAQARKTRETILQGPAVFELYDTFGFPIDLTSLI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
                   +D   F+  L++Q++R+RA        + E   + + +K    +F+GYD L 
Sbjct: 419 ARE-NKLLVDEDGFDTELQKQKARSRAA------TSIETDDWVVLKKDSEEEFVGYDHLT 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +  + + RKV  ++                                ++VF+ TPFYAE 
Sbjct: 472 TTVEIVKYRKVKQKQRSF----------------------------YQLVFNLTPFYAEG 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG        L I D +K+   I      V+    + +      ++ ++RR  +
Sbjct: 504 GGQVGDTGTISNANESLTIFDTKKENGLIVHL---VDELPEKIDGQFTARVNEESRRLSA 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLHHAL T+LG+HV Q GS + P+ LRFD +H   +T  E+  IE  V D I 
Sbjct: 561 SNHSATHLLHHALRTVLGAHVEQKGSLVNPNYLRFDFSHFSKVTDEEMAKIEAIVIDGIR 620

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           QNL +   R +  + A   GA AL G KY D VRV+          S  LCGGTHV +TG
Sbjct: 621 QNLSLEESRNVPIDAAQEMGAMALFGEKYGDTVRVIKFGD------SIELCGGTHVQNTG 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  I SES++ AGIRRIEAIT      +   Q+ KLKS+   LK +  +V   VE++
Sbjct: 675 QIGLFKIQSESAVAAGIRRIEAITNVAVEGYYADQESKLKSVNELLK-NPKDVSKAVEDL 733

Query: 764 WEEYRKLQLIHAKRK---LQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQK 818
             +  +LQ      K    +L   DL    I   D +++  +I ++++  +K ++  L+ 
Sbjct: 734 ISKNNQLQKQVENFKKEHAKLVKADLKTKIISKGDFSYLDALI-DLNAGSVKDILFQLKG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL----------GGG 866
           ++ + +  ++G  +E K ++ ++V E L+    +NA +L +  A ++             
Sbjct: 793 EVPN-LFAVIGSKEEDKCAISVLVDESLVSSKGWNAGNLVKSVASLIQGGGGGQAFFA-- 849

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                     +GG N N   +AI  V   +
Sbjct: 850 ---------TAGGKNANGLKEAIEKVKQEI 870


>gi|328955592|ref|YP_004372925.1| alanyl-tRNA synthetase [Coriobacterium glomerans PW2]
 gi|328455916|gb|AEB07110.1| alanyl-tRNA synthetase [Coriobacterium glomerans PW2]
          Length = 885

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/910 (35%), Positives = 492/910 (54%), Gaps = 51/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR +FL+FF++ G +++PSSSL+P  DP+L+  N+GM  FK  + G++       
Sbjct: 8   KSTSEIRASFLDFFERRGCKVVPSSSLLPE-DPSLLLANAGMNQFKQYYLGKKTMREIGA 66

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+R      D+D +G   RH +FFEMLGNFSFGG  KE+A   A++  T+   L 
Sbjct: 67  ASCQKCIRT----TDIDIIGSDGRHLSFFEMLGNFSFGGVTKEQACAWAYEFSTEVLKLA 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ T++DEDEEA ++W+ + G+S D I R+   DNFW+   TGPCGPCSEI++DQGE
Sbjct: 123 PHRLHFTIFDEDEEAHEIWRAL-GVSEDHISRLGAEDNFWAAGPTGPCGPCSEIYYDQGE 181

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      E +RY+E WNLVF ++++Q       LP  ++DTGMG+ER+A ++Q 
Sbjct: 182 AFGCGSPTCAPGCECDRYLEFWNLVFTRYDRQADGSMPELPHRNLDTGMGIERVAAIVQH 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
            ++NY+ D+   LI    +++G  Y       +  + R+I DH R+++F++ADGI P+NE
Sbjct: 242 ASSNYEGDVLSGLIALGVEISGRAYDPLSYQGDSRSLRIIADHSRAATFMLADGIRPSNE 301

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + RLLG     +     ++   MG  Y ELI+ + L+   L SE+
Sbjct: 302 GRGYVLRRLIRRAVMHGRLLGIEGAFLSRFARSVIETMGPHYSELIEHRDLVVSFLASEE 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  T+D G   L+  L+ L + + L+G VAF L+DT G P+D+  +I   RG   ID 
Sbjct: 362 ERFFATIDNGSAFLEDALAGLARGDTLDGRVAFTLHDTFGFPIDLTIEIARDRG-ISIDE 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+ A+ EQR RARA    +   + + +W  L +    T F+GYD              
Sbjct: 421 EGFDNAMTEQRERARAQVRDVAWSSFDSVWIGLADTISPTAFVGYDNYE----------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + + AI+ +   V+   + Q  E+V D+TPF+ E GGQ+GDTG  +
Sbjct: 470 ------------AEARIVAIILEDRSVDAVEADQVAEIVLDRTPFFGERGGQIGDTGTLL 517

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILR--TEMSLVLTIDYQNRRQLSINHSATHLL 593
                      + +     +   +   G  R     +++  ID   R ++  NH+ATHLL
Sbjct: 518 RPDGGTAFVVERTEWRERILCSHVGRVGAERLSVGDTVIAQIDVARRERIRRNHTATHLL 577

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD TH    T+ +L ++ED VND I ++LPV T +
Sbjct: 578 HAALRGVLGEHVAQEGSFVDDERLRFDFTHFSACTADQLAAVEDRVNDWIFEDLPVATDV 637

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E+A +SGA AL   KY+ RVRVVS      G  S  LCGGTH  +T ++ +  I+SE
Sbjct: 638 MDLEEAKSSGALALFSEKYSSRVRVVSC-----GTASRELCGGTHAHTTSQLGIFKILSE 692

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           SS+    RRIEA++   ARS    +   L   A  L+V   +V  RV  +    R+    
Sbjct: 693 SSVGTNTRRIEAVSSAGARSFFRRRLALLDETAEKLRVRPEDVPARVSALERSLRETSDK 752

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI-IML 827
             +  +    + +               +   I  +D ++L+   D ++K+    +  +L
Sbjct: 753 LRRALVGDTSDAIDRAIGEAVDAGGYALVVARIDGLDPQDLRGAWDTIRKRSDGPVAAVL 812

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G + ++   ++    ED +   F+   L +  A  + GG GGGRP MAQ+GG      D
Sbjct: 813 AGATSKRTPVLIAAGDEDAVHAGFDGAALIKRIAPKIAGG-GGGRPAMAQAGGKETGGID 871

Query: 887 QAIAGVASFL 896
            A++   + L
Sbjct: 872 AALSMARTEL 881


>gi|313885025|ref|ZP_07818777.1| alanine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619716|gb|EFR31153.1| alanine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 883

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/919 (35%), Positives = 494/919 (53%), Gaps = 60/919 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+FF +  H++ PS+SLIP NDPTL++ NSG+   K  F G E P  
Sbjct: 1   MKELTSAQIRQMYLDFFAEKNHDVKPSASLIPINDPTLLWINSGVATLKKYFDGTEVPAN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QKC+R     ND++NVG T RHHT FEMLGN+S G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKCIRT----NDIENVGVTARHHTLFEMLGNWSIGDYFKEEAIAWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               +   LY T Y ED +  ++WK+    + D ++ +   DNFW +   GPCGP +EIF
Sbjct: 117 WMGFEPELLYATYYPEDTDTPEIWKQQPNFNPDHLVPV--EDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ER++EIWNLVF +F          LP  ++DTGMGLE
Sbjct: 174 YDRGEAYNNLAEDDPENYPGGENERWLEIWNLVFSEFNHMPDDTYQPLPNKNVDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +V+Q+   N++ DLF  +I+  E +T     +  G N V+ +VI DH+R+ SF I+D
Sbjct: 234 RMTSVVQDTPTNFETDLFLPIIKQIEGLTDGIVYEEAGANKVSFKVIADHIRAVSFAISD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGY+LRR++RR++ + R LG  +  +  L+P +   MG  Y EL +    ++
Sbjct: 294 GALPSNEGRGYILRRLIRRSVMHGRRLGIKDKFLAQLVPTIAQIMGQFYSELQEKVEFVQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILC 406
             L SE++RF +T++ G   L  ++  L  +E+  + GD AFKLYDT G PL++ Q+   
Sbjct: 354 SVLASEEDRFHETIEAGEDHLVSIIESLKTEEVYEIPGDQAFKLYDTFGFPLELTQEE-A 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 +D   F   +E+QR RAR       S   +   F+  + +    F+GYD L   
Sbjct: 413 ELRGFSVDTQGFEAEMEQQRQRARQARSKEESMNVQSTVFT--DIHTEYDFVGYDSLVS- 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ VKAIV + E V+     Q   V F+++PFYAE GG
Sbjct: 470 ----------------------NATVKAIVFEDESVQNLAKNQIGWVFFNRSPFYAEMGG 507

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHH-AIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  +     +      +KA      H        +  + S  L +D ++R   + 
Sbjct: 508 QIADKGLIMDGNDEVGRVLDVQKAPNGQAMHKVEALTMPINLDQSYTLQVDPKHRTLTNQ 567

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + PD LRFD +H   +T+ E+K++ED VN  I  
Sbjct: 568 NHTATHLLHRALKDVLGDHANQAGSYVGPDRLRFDFSHFGKMTAEEIKAVEDKVNAFIEA 627

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +L V T  M  ++A A GA AL G KY D VRVV++        S  LCGGTHV++T +I
Sbjct: 628 SLAVNTTEMPIDEAKALGAMALFGEKYGDVVRVVNISN-----ESIELCGGTHVANTNQI 682

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIW 764
               ++SE+ I AGIRRIEA+TGQ A ++   Q+  L  +   LKVSQ + +V R++++ 
Sbjct: 683 GTFKLLSETGIGAGIRRIEALTGQAAFNYYRDQEAILHQIQDRLKVSQTDMLVNRIDQMQ 742

Query: 765 EEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            E ++        + ++             ++  V++++  + +  +  ++ + D  ++K
Sbjct: 743 AELKEAHAQIESLQAKVMQAASDKLFDEVKEVGAVSYIALSLKDQSADAMRQLGDIWKQK 802

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             + ++++   + EK   +++   + +     A DL +  AK + GG GGG+P MAQ+GG
Sbjct: 803 ANADLLIVAADNGEKANLLVLANDQAIDKGVKAGDLIKALAKYVQGG-GGGKPQMAQAGG 861

Query: 880 PNGNKADQAIAGVASFLKK 898
            N     + +  +   ++K
Sbjct: 862 KNPVGIPELMESIDLEIEK 880


>gi|148543768|ref|YP_001271138.1| alanyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|227363252|ref|ZP_03847384.1| alanine--tRNA ligase [Lactobacillus reuteri MM2-3]
 gi|325682140|ref|ZP_08161658.1| alanine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|148530802|gb|ABQ82801.1| alanyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|227071708|gb|EEI09999.1| alanine--tRNA ligase [Lactobacillus reuteri MM2-3]
 gi|324978784|gb|EGC15733.1| alanine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 884

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/918 (34%), Positives = 499/918 (54%), Gaps = 63/918 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT  + F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W++  G++ D +  I   DNFW + + GP GP +EIF+D+G
Sbjct: 124 DPERLYITYYPKDHDAYNRWRE-VGVAEDHL--IADEDNFWDIGQ-GPSGPDTEIFYDRG 179

Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +          E        RY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 180 QEFNNLADDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  LI+ +E+ +G K  G N  +    ++I DH+R+ +F I DG LP
Sbjct: 240 IFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   + 
Sbjct: 300 SNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASVIE 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF  TL+ GL LL+ V++   + +   ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 360 SEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDEGL 419

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR    +  G G    +W S KE    ++++GY  L      
Sbjct: 420 T-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGYTDLTVD--- 472

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQL 528
                              ++ V  +   G+  +EA  G K +E++FD TPFYAE GGQ+
Sbjct: 473 -------------------NAKVIGLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGGQV 513

Query: 529 GDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            DTG  I +   ++      + A      H +     ++      L +D     ++  NH
Sbjct: 514 ADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELTAPIKKGARYKLVVDRIRHLKIEKNH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK +E+ VN+ I + +
Sbjct: 574 TATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMVNEQIWKEI 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T E+ L
Sbjct: 634 PVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNELGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766
             IVSE  + AG+RRIEA+T   A   L  +D+ L   A+ LKV     V  +VE +  E
Sbjct: 689 FKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKEVPHQVETLQNE 748

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++ Q  +   + ++  +       +     + + ++  +      +L+ + DA + K  
Sbjct: 749 LKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLRQLADAWRSKAL 808

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           S +++L   S + KA++L+ V++D       A DL +  A  + GG GGGRP++AQ+GG 
Sbjct: 809 SDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGG-GGGRPNLAQAGGK 866

Query: 881 NGNKADQAIAGVASFLKK 898
           N     +A++    +L K
Sbjct: 867 NPAGIKEALSQAKGYLDK 884


>gi|184153174|ref|YP_001841515.1| alanyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|183224518|dbj|BAG25035.1| alanyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
          Length = 885

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/926 (34%), Positives = 500/926 (53%), Gaps = 69/926 (7%)

Query: 1   MS------NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE 54
           M       N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+ 
Sbjct: 1   MMKELKKLNSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKV 60

Query: 55  KPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
            P    +T+ QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LL
Sbjct: 61  VPDNPRMTSSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELL 116

Query: 115 T--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           T  + F  D  RLYIT Y +D +A+  W++  G++ D +  I   DNFW + + GP GP 
Sbjct: 117 TSDEWFGFDPERLYITYYPKDHDAYNRWRE-VGVAEDHL--IADEDNFWDIGQ-GPSGPD 172

Query: 173 SEIFFDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           +EIF+D+G+          E        RY+EIWN+VF QF    +     LP  +IDTG
Sbjct: 173 TEIFYDRGQEFNNLADDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTG 232

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSF 284
           MGLER+ ++ +    N++ DLF  LI+ +E+ +G K  G N  +    ++I DH+R+ +F
Sbjct: 233 MGLERVVSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITF 292

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++  
Sbjct: 293 AIGDGALPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNA 352

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQ 402
             I   + SE++RF  TL+ GL LL+ V++   + +   ++G  AFKLYDT+G P+++ +
Sbjct: 353 DYIASVIESEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTK 412

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F  A+ EQ++RAR    +  G G    +W S KE    ++++GY 
Sbjct: 413 EYAEDEGLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGYT 468

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPF 520
            L                         ++ V  +   G+  +EA  G K +E++FD TPF
Sbjct: 469 DLTVD----------------------NAKVIGLAHDGQQADEAQPGDKNIELIFDVTPF 506

Query: 521 YAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           YAE GGQ+ DTG  I +   ++      + A      H +     ++      L +D   
Sbjct: 507 YAEMGGQVADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELTAPIKKGARYKLVVDRIR 566

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
             ++  NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK +E+ V
Sbjct: 567 HLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMV 626

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ I + +PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV
Sbjct: 627 NEQIWKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHV 681

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVG 758
            +T E+ L  IVSE  + AG+RRIEA+T   A   L  +D+ L   A+ LKV     V  
Sbjct: 682 KNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKEVPH 741

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813
           +VE +  E ++ Q  +   + ++  +       +     + + ++  +      +L+ + 
Sbjct: 742 QVETLQNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLRQLA 801

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           DA + K  S +++L   S + KA++L+ V++D       A DL +  A  + GG GGGRP
Sbjct: 802 DAWRSKALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGG-GGGRP 859

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
           ++AQ+GG N     +A++    +L K
Sbjct: 860 NLAQAGGKNPAGIKEALSQAKGYLDK 885


>gi|242092594|ref|XP_002436787.1| hypothetical protein SORBIDRAFT_10g008780 [Sorghum bicolor]
 gi|313471753|sp|C5Z7K4|SYAP_SORBI RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags:
           Precursor
 gi|241915010|gb|EER88154.1| hypothetical protein SORBIDRAFT_10g008780 [Sorghum bicolor]
          Length = 961

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/928 (35%), Positives = 497/928 (53%), Gaps = 72/928 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  +IR  FLEF+   GH++LPSSSL+P +DPT++ T +GM+ FK IF G+E       T
Sbjct: 64  SGDAIRRRFLEFYAARGHKILPSSSLVP-DDPTVLLTIAGMLQFKPIFLGKEPRRVPCAT 122

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RH TFFEMLGNFSFG YFK+ A   AW+L TKE+ L  
Sbjct: 123 TSQKCIRT----NDIENVGRTARHQTFFEMLGNFSFGDYFKKEATAWAWELATKEYGLPA 178

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+I+V+++D EAF +W    G+  ++I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 179 ERLWISVFEDDNEAFDIWHNEVGVPKERIKRMGAEDNFWTSGATGPCGPCSEIYYDFYPE 238

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       +  R+IE +NLVFMQ+ +++      L + +IDTGMGLERMA +LQ+  N
Sbjct: 239 -RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPN 297

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  +  + Y   +     N ++I DH+R+  +L++DG++P+N GRGY
Sbjct: 298 NYETDLIFPIIEKAASMAMVSYAKTDDATKTNLKIIGDHMRAVVYLVSDGVIPSNIGRGY 357

Query: 300 VLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RR +   RL+G             +  L   + +      P++   +  I   L
Sbjct: 358 VVRRLIRRVVRMGRLIGIRGDGHGNSEGAFLPSLAEVVISLSTEIDPDVESRRRSILGEL 417

Query: 352 RSEDERFGKTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           + E+ RF +TL+RG  LLD +L        + G    L+G   F LYDT+G P++I  +I
Sbjct: 418 QREELRFVQTLERGEKLLDELLDGAVLSAGNNGDKPSLSGKDLFLLYDTYGFPVEITAEI 477

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG+  +DI  F+  +E QR +++A    +      +    + +    T F+GYD L 
Sbjct: 478 ASERGVT-VDIEGFDIEMENQRKQSQAAHNVVKLSVGNET--EIIKSIPDTVFLGYDSL- 533

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   S++V+ ++  G  V E   G +VE++ D+TPFYAE+
Sbjct: 534 ----------------------SASAVVRGLLVNGNPVNEVSEGSEVEILLDRTPFYAES 571

Query: 525 GGQLGD-------TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           GGQ+GD        G        ++I DVQK    IFVH   +++G +     +   +D 
Sbjct: 572 GGQVGDNGFLYVNGGEDRSQAAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEVDACVDA 631

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R+    +H+ATHLL  AL +++GS  SQ GS +  D LRFD    +P++  EL  IE 
Sbjct: 632 KLRQGAKAHHTATHLLQSALKSVVGSETSQAGSLVAFDRLRFDFNFHRPVSEGELTRIEL 691

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  I+    + T++M  +DA  +GA A+ G KY ++VRVV V        S  LCGGT
Sbjct: 692 LVNQWISNAAHLETKVMALQDAKNAGAIAMFGEKYGEQVRVVEVPG-----VSLELCGGT 746

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HVS+T EI    I+SE  I +GIRRIEA+ G     ++  +D  ++ L S LKV   +V 
Sbjct: 747 HVSNTAEIRGFKIISEQGIASGIRRIEAVAGDAFIDYVCARDNYMRRLCSSLKVKAEDVN 806

Query: 758 GRVEEIWEEYRK-------LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           GRVE I EE R        L+   A  K        +  +  +V  +   + +VD+  LK
Sbjct: 807 GRVETILEELRATRNEVSSLRSKIAVLKAASLASKATTVEPQNVRIVVENMGDVDADGLK 866

Query: 811 SVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868
           S  + L   +Q    ++L     + K S++   +  ++     A       AK+ GGGG 
Sbjct: 867 SAAEYLIGTLQDPAAVILGSSPGDGKVSLVAAFSPAVVKMGLQAGKFVGGIAKLCGGGG- 925

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG+P+ AQ+GG        A+    + +
Sbjct: 926 GGKPNFAQAGGRKPENLPDALEKARAEI 953


>gi|296139683|ref|YP_003646926.1| alanyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296027817|gb|ADG78587.1| alanyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 890

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/921 (35%), Positives = 481/921 (52%), Gaps = 63/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F + F K GH  +PS+SL+  NDP  +F  +GMVPF   F GQ+ P Y+  
Sbjct: 1   MQTHEIRKRFTDHFVKAGHTQVPSASLV-LNDPNQLFVIAGMVPFVPYFLGQQTPPYERA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGDYFKRDAIRFAWSLLTNPVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +D +RL+ TVY +D+EA  LW ++  +  ++I R    DN+WSM   GP GPCSEIF
Sbjct: 116 GFGMDPQRLWSTVYLDDDEARDLWLEVGQVP-ERIQRRGMKDNYWSMGIPGPAGPCSEIF 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+     +        LPK +IDTGMG+
Sbjct: 175 YDRGPEY-GVEGGPEADEDRYIEIWNLVFMQNERGQGGGKENFEILGELPKKNIDTGMGI 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N YD DL + +I  ++ +TG +Y      +    RVI DH R++  LI 
Sbjct: 234 ERVAFLLQGVDNVYDTDLLRPVIDRAQDLTGQRYNAGDPEHDRLFRVIADHTRTAVMLIE 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  ARLLG T   M   +  +   M  +YP L      I
Sbjct: 294 DGVNPGNDGRGYVLRRLLRRVVRSARLLGATGETMGVFVDTVIATMSPSYPSLADDAQRI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
                 E+  F KTL++G+ L    +         +L+GD AF L+DT+G P+D+  ++ 
Sbjct: 354 RTVATGEEAAFLKTLEQGITLFGNAVDSTKSAGKTVLSGDDAFTLHDTYGFPIDLTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D   F   + EQR RA+  +    S   +   F      G T+F G+D L  
Sbjct: 414 SEAGL-QVDEDGFRALMAEQRQRAKDDANSRKSALADLSVFREFLDRGPTEFTGFDELVS 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + V  +V+ G  V     G  VE+V D++P YAEAG
Sbjct: 473 D-----------------------ARVLGLVKDGVRVPVVHQGDDVEIVLDRSPLYAEAG 509

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G        ++ +TDVQ+ A+ ++ H   V  G +    ++ + +D  +R   +
Sbjct: 510 GQLADIGTITTAAGAQIVVTDVQRVAKTLWRHQGTVAVGEVSEGDAVTVAVDAGHRHGST 569

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS THL+H AL  +LG +  Q GS   P  LRFD   S  ++  +   IE   N+ + 
Sbjct: 570 QGHSGTHLVHAALRQVLGPNAVQAGSLNRPGYLRFDFRWSGGLSEDQRTDIERVTNEAVQ 629

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T++ + E A  SGA AL G  Y D+VRVV +    GG  S  LCGGTHV+S+G 
Sbjct: 630 ADYDVHTQVTDLETAKKSGAMALFGENYGDQVRVVEI----GGPFSMELCGGTHVASSGL 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +  + ++ ESS+ +G+RR+EA  G  ++ +L  +   + +L S LKV   +V GRVE + 
Sbjct: 686 VGPVTLLGESSVGSGVRRVEAYVGLDSQKYLAKERALVSALTSSLKVPAEDVPGRVESLV 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII-SEVDSKELKSVMDALQK 818
              +  +    K + Q  +  LS       ++  V  ++    S V + EL+S++  L+ 
Sbjct: 746 SRLKDAEKELEKLRAQAALSALSELASSPDRVGAVRLVAAQAPSGVAAGELRSLVTQLKG 805

Query: 819 KIQ--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++   + +I L  +  E K   ++   +   D    A D+ + +A  + GG GGG+  MA
Sbjct: 806 RLGAEAAVIALFAVDGE-KVPFVVAANDAAQDLGVKAGDVVKAAAPAV-GGRGGGKADMA 863

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q  G + +    A+A V + +
Sbjct: 864 QGAGSDASGMGAALAAVRAEV 884


>gi|227544204|ref|ZP_03974253.1| alanine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300908199|ref|ZP_07125665.1| alanine--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227185840|gb|EEI65911.1| alanine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300894626|gb|EFK87982.1| alanine--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 895

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/918 (34%), Positives = 499/918 (54%), Gaps = 63/918 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 19  NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 78

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT  + F  
Sbjct: 79  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 134

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W++  G++ D +  I   DNFW + + GP GP +EIF+D+G
Sbjct: 135 DPERLYITYYPKDHDAYNRWRE-VGVAEDHL--IADEDNFWDIGQ-GPSGPDTEIFYDRG 190

Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +          E        RY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 191 QEFNNLADDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERVVS 250

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  LI+ +E+ +G K  G N  +    ++I DH+R+ +F I DG LP
Sbjct: 251 IFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGALP 310

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   + 
Sbjct: 311 SNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASVIE 370

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF  TL+ GL LL+ V++   + +   ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 371 SEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDEGL 430

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR    +  G G    +W S KE    ++++GY  L      
Sbjct: 431 T-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGYTDLTVD--- 483

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQL 528
                              ++ V  +   G+  +EA  G K +E++FD TPFYAE GGQ+
Sbjct: 484 -------------------NAKVIGLAHDGQQADEARPGDKNIELIFDVTPFYAEMGGQV 524

Query: 529 GDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            DTG  I +   ++      + A      H +     ++      L +D     ++  NH
Sbjct: 525 ADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELTAPIKKGARYKLVVDRIRHLKIEKNH 584

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK +E+ VN+ I + +
Sbjct: 585 TATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMVNEQIWKEI 644

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T E+ L
Sbjct: 645 PVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNELGL 699

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766
             IVSE  + AG+RRIEA+T   A   L  +D+ L   A+ LKV     V  +VE +  E
Sbjct: 700 FKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKEVPHQVETLQNE 759

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++ Q  +   + ++  +       +     + + ++  +      +L+ + DA + K  
Sbjct: 760 LKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLRQLADAWRSKAL 819

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           S +++L   S + KA++L+ V++D       A DL +  A  + GG GGGRP++AQ+GG 
Sbjct: 820 SDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGG-GGGRPNLAQAGGK 877

Query: 881 NGNKADQAIAGVASFLKK 898
           N     +A++    +L K
Sbjct: 878 NPAGIKEALSQAKGYLDK 895


>gi|194468332|ref|ZP_03074318.1| alanyl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194453185|gb|EDX42083.1| alanyl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 884

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/918 (34%), Positives = 499/918 (54%), Gaps = 63/918 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT  + F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W++  G++ D +  I   DNFW + + GP GP +EIF+D+G
Sbjct: 124 DPERLYITYYPKDHDAYNRWRE-VGVAEDHL--IADEDNFWDIGQ-GPSGPDTEIFYDRG 179

Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +          E        RY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 180 QEFNNLADDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  LI+ +E+ +G K  G N  +    ++I DH+R+ +F I DG LP
Sbjct: 240 IFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   + 
Sbjct: 300 SNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASVIE 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF  TL+ GL LL+ V++   +++   ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 360 SEEDRFSATLNGGLNLLNNVIAEAKENKTNEIDGRTAFKLYDTYGFPIELTKEYAEDEGL 419

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR    +  G G    +W S KE    ++++GY  L      
Sbjct: 420 T-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGYTDLTVD--- 472

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQL 528
                              ++ V  +   G+  +EA  G K +E++FD TPFYAE GGQ+
Sbjct: 473 -------------------NAKVIGLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGGQV 513

Query: 529 GDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            DTG  I +   ++      + A      H +     ++      L +D     ++  NH
Sbjct: 514 ADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELTTPIKKGARYKLVVDRIRHLKIEKNH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK +E+ VN+ I + +
Sbjct: 574 TATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMVNEQIWKEI 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T E+ L
Sbjct: 634 PVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNELGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766
             IVSE  + AG+RRIEA+T   A   L  +D+ L   A+ LKV     V  +VE +  E
Sbjct: 689 FKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKEVPHQVETLQNE 748

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++ Q  +   + ++  +       +     + + ++  +      +L+ + D  + K  
Sbjct: 749 LKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLRQLADTWRSKAL 808

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           S +++L   S + KA++L+ V++D       A DL +  A  + GG GGGRP++AQ+GG 
Sbjct: 809 SDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGG-GGGRPNLAQAGGK 866

Query: 881 NGNKADQAIAGVASFLKK 898
           N     +A++    +L K
Sbjct: 867 NPAGIKEALSQAKDYLDK 884


>gi|218258080|ref|ZP_03474507.1| hypothetical protein PRABACTJOHN_00161 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225799|gb|EEC98449.1| hypothetical protein PRABACTJOHN_00161 [Parabacteroides johnsonii
           DSM 18315]
          Length = 875

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/920 (36%), Positives = 484/920 (52%), Gaps = 76/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKDFFASKQHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKQEAINWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D+EA   W+K   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLSRDDEAAGYWEKF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSEEERAAIPGQDMVNKDHPQVIEIWNLVFMQYNRKADSSLEPLPARVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    V  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIADMAGTSYGKDKQQDVAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKESFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +++G  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKNVISGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   +I  F+  +++Q+ RAR  ++          W  LKE  G   F+GYDL 
Sbjct: 419 ILRENGMEA-NIDEFDVEMQKQKDRARNAAV-----IETGDWVVLKE--GGCNFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECDAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D   + + D +++        A   +      ++    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDETIDVIDTKRENNLPVHLVA---KLPKDVTVTFTAKINEKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V++ I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEKLVSEKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+   R M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANYPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGN------SIELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L +V ESSI AG+RRIEA+T + A ++     + L+ L +    +  N+   +++
Sbjct: 674 GMIGSLRVVGESSIAAGVRRIEAVTAEGAENYTFMLQDSLRELRAMFN-NVPNLSQTIKK 732

Query: 763 IWEEYRKLQLIH---AKRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQ 817
             EE  +L+       K K+Q   +DL    +    V  +     E +   +K +   ++
Sbjct: 733 AIEENAELKKQVGDYLKEKVQQLKKDLIAKAVERNGVKVVVFR-GEANVDAIKDLAFQIK 791

Query: 818 --KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHM 874
                   +  + GI   +K +++++++E L+ +  NA  L + +AK++ GG GGG+PH 
Sbjct: 792 GESNTDEKVFFVAGIKDGEKCALMVMLSEQLVSEGLNAGKLVKDAAKLIQGG-GGGQPHF 850

Query: 875 AQSGGPNGNKADQAIAGVAS 894
           A +GG N     +A+  +  
Sbjct: 851 ATAGGKNVAGLGEAVEHILD 870


>gi|120434599|ref|YP_860290.1| alanyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|205830059|sp|A0LXX3|SYA_GRAFK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117576749|emb|CAL65218.1| alanyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 871

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/920 (36%), Positives = 482/920 (52%), Gaps = 73/920 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FLEFF+   H ++PS+ ++  +DPTLMFTN+GMV FK  F G        V
Sbjct: 1   MKSQDIRKQFLEFFKSKSHTIVPSAPMVLKDDPTLMFTNAGMVQFKEFFLGNSVAKSNRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+ + + 
Sbjct: 61  TDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAISWAWELLTEVYKIS 120

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              LY++V++          D EA +LWKKI  +  ++II     DNFW M + GPCGPC
Sbjct: 121 PENLYVSVFEGSDDRDDLGLDTEALELWKKI--VPEERIIYGNKKDNFWEMGDQGPCGPC 178

Query: 173 SEIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + +EIWNLVFMQ+ ++   +   LP   IDTGM
Sbjct: 179 SEIHIDIRSEEEKAKTPGRDLVNMDHPQVVEIWNLVFMQYNRKANGDLEELPAKHIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ   +NYD D+F  L+   E++TG+ Y     N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMVLQNTQSNYDTDVFTPLVGEIEEITGVTYGKSEENNIAMRVIADHVRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+P L  +MG+ + EL   + 
Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFIYKLVPVLSGQMGATFQELKSQQN 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LIE  +R E+  F +TLD+GL+LL+ ++    KD+ ++G+ AF+LYDT G P+D+   IL
Sbjct: 359 LIENVIREEEASFLRTLDQGLILLENLMKE-SKDKTISGEKAFELYDTFGFPIDLTALIL 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   +D   F   L++Q+ R+R       +  +   W  L      + F+GYD L  
Sbjct: 418 KENGY-DLDEKGFEAELKKQKDRSREA-----TAVSAGDWIELNPVDEES-FVGYDKLEA 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +   RK                           VE    G+  +VV ++TPFY E G
Sbjct: 471 DAKIARYRK---------------------------VESKKKGEMFQVVLNKTPFYPEGG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G  +     +      KK     +H    +     TE      ++   R   + 
Sbjct: 504 GQVGDKGILMSSDGEVVDVVDTKKENNQIIH--FTKNLPKNTEAEFKAIVNKTERYNTAS 561

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL +ILG+HV Q GS +    LRFD +H   +T  EL+ +E+ VN  I +
Sbjct: 562 NHTATHLLHQALRSILGTHVEQKGSMVQSGYLRFDFSHFSKVTGEELEKVENFVNARIRE 621

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            L +   R ++ ++AI  GA AL G KY D VR +          S  LCGG HV +T +
Sbjct: 622 QLSLDEQRNISYQEAIDQGAIALFGEKYGDSVRAIRFGD------SMELCGGIHVKNTSD 675

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I  ES++ +GIRRIEAITG+ A  +   Q   L+ + S LK +  + V  +  + 
Sbjct: 676 IWHFKISGESAVASGIRRIEAITGEAAMKYFEEQTNILEEIKSGLK-NSNDPVKAINNLQ 734

Query: 765 EEYRKLQLIHA-----KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE   L+         K K   +        I  VNF+S  + ++D+  +K +   L ++
Sbjct: 735 EENINLKRQIESLLKDKAKNLKSKLKHEVKSINGVNFLSKKV-DLDAAGIKDLAFQLGEE 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           I   + +L G  +  KA +   ++++L+     NA  + R   K + GGG GG+P  A +
Sbjct: 794 IDD-LFILFGAEQHGKALLSCYISKELVKGKDLNAGQIVRELGKYIQGGG-GGQPFFATA 851

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG N +  ++A+    SF+K
Sbjct: 852 GGKNPDGLNEALQKAESFIK 871


>gi|290968328|ref|ZP_06559869.1| alanine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781603|gb|EFD94190.1| alanine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 869

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/906 (37%), Positives = 508/906 (56%), Gaps = 52/906 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +LEFF++  H  L S SLIP NDP+L+   +GM P K  FTG+  P    V
Sbjct: 4   MTGNEIRKAYLEFFKRKRHLQLHSFSLIPENDPSLLLIGAGMAPLKPYFTGKLVPPSPRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+  +LD
Sbjct: 64  TTSQKCIRTG----DIDNVGRTARHHTFFEMLGNFSFGDYFKKEAISWAWEFLTEVLELD 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+TVY +D EA+  W  + GL  ++I +    DNFW + E GPCGP SEIF+D G 
Sbjct: 120 TDKLYVTVYPDDTEAYGYWHTVIGLPEERIFKC--EDNFWEIGE-GPCGPDSEIFYDLGA 176

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWNLVF Q+ +  + +   L K +IDTG GLER+A+V+Q+
Sbjct: 177 ERGCGKPECTVGCDCDRYLEIWNLVFSQYNRTAEGKYEPLAKKNIDTGAGLERLASVIQQ 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           K +N++ DL   +I+    +    Y +    V  +VI DH+R+ + +I+DGILP+NEGRG
Sbjct: 237 KESNFETDLIFPIIEEVITLCHGDYTDPQQKVAMKVIADHIRAITVMISDGILPSNEGRG 296

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA+ + RLLG  +  +  L+  +   MG  YPEL + + LI++ + +E+++F
Sbjct: 297 YVLRRVLRRAVRFGRLLGIRQLFLSGLVETVLAIMGEEYPELREHEALIKKVINTEEKQF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL +G+ LLD +L+  G  + L+G   FKLYDT+G P+++ ++I   +G+  ID+  F
Sbjct: 357 SETLVQGMELLDSLLAKAGTAKTLSGQEVFKLYDTYGFPVELTEEIAAEQGVT-IDMNGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A++EQ+ RARA    + +                              +  D   L +
Sbjct: 416 AAAMKEQQERARAARADVAAKV----------------------------LTPDTTSLDR 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +         ++ +  + + G+  E    G+ + V+ D+TPF+AE GGQLGDTG     G
Sbjct: 448 QTLQYAEGVTTATIVMLGKDGQEAEAVHDGETITVILDRTPFHAEGGGQLGDTGVLTAHG 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  +TD +    GI    A V  G L+   ++ + +D +    L+ NH+ATHLLH AL 
Sbjct: 508 GKAVVTDTKALPNGIIYMIAGVMEGSLKKGETVTVAVDTERHAALARNHTATHLLHTALR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV+Q GS +TPD LRFD TH  P+T+AEL+  E  VN  I +N PV+   MNRE+
Sbjct: 568 QVLGNHVNQAGSLVTPDHLRFDFTHFSPVTAAELREAEQLVNREILKNTPVMVTEMNREE 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA AL G KY D VRVVS+     G  S  LCGG+HV ST E+    I+SES    
Sbjct: 628 AKQKGATALFGEKYGDVVRVVSI-----GDFSCELCGGSHVKSTAEVGTFRIISESGTGT 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEAITG  A +    + + L   A+ LKV   ++V ++ ++ EE +  +    + K
Sbjct: 683 GVRRIEAITGAAALAKAQAEAQILAQAAAVLKVKPESLVTKLTQLAEELKITEREVQRLK 742

Query: 779 LQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
                  +            V   + +    D   L++  D L  K   G+++L G+  +
Sbjct: 743 KDAAAAAVDRLAATTQHYGSVAVSAAVAPADDMDGLRTFADLLLDKQGGGVVLL-GMVHD 801

Query: 834 KKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K + +  V + D     +A  + + +A+  GG G GGRP MAQ+GG    K + A+   
Sbjct: 802 GKVNFVCKVAKADTKKGLHAGKIIKAAAQAAGGNG-GGRPDMAQAGGKEPEKLEAALRAG 860

Query: 893 ASFLKK 898
              + +
Sbjct: 861 CEVVTQ 866


>gi|227891107|ref|ZP_04008912.1| alanyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227866981|gb|EEJ74402.1| alanyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
          Length = 917

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/920 (35%), Positives = 505/920 (54%), Gaps = 62/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+FF+  GH+++ S+ LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 38  MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 97

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  +
Sbjct: 98  HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 153

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITVY ED++A K W +  G+    I      DNFW + E GP GP SEIF
Sbjct: 154 WFDMDKEKLYITVYPEDKDAKKYW-EEVGVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 209

Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           FD+G+ +        E        RY+EIWN+VF +F  +       LP  +IDTGMGLE
Sbjct: 210 FDRGQEMNNLPEDDPESYPGGENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMGLE 269

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIAD 288
           R+ +V Q    N++ DLF  +I+ + +++  K  G N    V+ +VI DH R+ +F I D
Sbjct: 270 RVVSVFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAIGD 329

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M SAYPE+++    IE
Sbjct: 330 GALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEFIE 389

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + ++ E++RF  TL  G+ LLD +++   ++  + L G   FKLYDT+G PL++ ++   
Sbjct: 390 KVIKMEEDRFNDTLKEGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEYAN 449

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   FN+ +E+Q++RARA      S   +     L +    ++++GY  L+  
Sbjct: 450 DEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL--LTDITTPSEYVGYHELK-- 504

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 + ++K I+   E+V+   +  + +V+FD+TPFYAE GG
Sbjct: 505 ---------------------ANGVLKDIIIDNELVDTVPADSRAQVIFDKTPFYAEMGG 543

Query: 527 QLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    +  + A      H I     +  E +  L +D     ++  
Sbjct: 544 QVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHVLKEMTRENTYSLEVDVAFHNKVKK 603

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LGSH  Q GS + P  LRFD T+   +T+ +LK IED VN  I +
Sbjct: 604 NHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIEDIVNAKIWE 663

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V T + ++E A   GA AL G KY D VRVV V     G +S   CGGTHV++T EI
Sbjct: 664 NIQVETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCGGTHVANTNEI 718

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764
            L  IVSES + AG+RRIEA+T + A   L  +++ L+  A  LK V    V  ++E++ 
Sbjct: 719 GLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIKEVPRKIEQLQ 778

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           E+ + L+      + +   +       +  +I     ++  ++     +L+ + D  ++K
Sbjct: 779 EQVKLLEQQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVSGMSQLRQLADQWKEK 838

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   + + K +++  ++ D +   + A DL +  A  +GGGG GGRP +AQ+G
Sbjct: 839 QLSDVLVLATATADGKVNLITAISGDAVKEGYKAGDLIKAIAPKVGGGG-GGRPDLAQAG 897

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G       +A+     +L K
Sbjct: 898 GKKPEGIQEALKAAEDWLNK 917


>gi|282880930|ref|ZP_06289621.1| alanine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281305153|gb|EFA97222.1| alanine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 875

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/920 (35%), Positives = 496/920 (53%), Gaps = 75/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F +FF+  GH ++ S+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 3   MMTANEIRESFKKFFESKGHTIVASAPMVIKDDPTLMFTNAGMNQWKDIILGNKQPEPRR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFKE AI  AW+ L     L
Sbjct: 63  RADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVGVLHL 122

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D EA K W+K   L AD II    +DNFW M +TGPCGPC
Sbjct: 123 DPKDLYVTVFEGSPEENIPHDSEAEKYWRK--HLPADHIINGNKHDNFWEMGDTGPCGPC 180

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWN+VFMQF ++       L    IDTGM
Sbjct: 181 SEIHVDSRSDEEKAQLPGRELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+  +LQ K +NYD D+F+  I   E+++G KY       V  RV+ DHLR+ +F I
Sbjct: 241 GFERLVRMLQGKNSNYDTDIFQPFIHEMERLSGKKYGEQEDVDVAMRVVADHLRAVAFSI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ YA   LG  E  +  LLP L  EMG AYPEL+  + 
Sbjct: 301 ADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQREAFVYKLLPVLVDEMGGAYPELVAQRE 360

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL++G+ LL   +  L K     ++G+ AF+L+DT+G PLD+ + 
Sbjct: 361 LIGKVMKEEEDSFLRTLEKGINLLSNAMDELKKAGKTQIDGEQAFRLFDTYGFPLDLTEL 420

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I    G + +D   F+  +++Q+ RAR       +      W  +++  G  QF+GYD  
Sbjct: 421 ICREHGFS-VDEQQFHAEMQKQKDRARNA-----AQVENSDWVEIRQ--GEQQFVGYDYT 472

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                + + RKV  +K                                EV+ D TPFY E
Sbjct: 473 EYECHILKYRKVTQKKNSF----------------------------YEVILDFTPFYGE 504

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G  + +   + + D +++           ++     E   +  ++   R   
Sbjct: 505 MGGQVGDQGVLVSEHETVDVIDTKRENNQSIHII---KQLPQHPEADFMACVETDKRDAC 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLL +AL  +LG HV Q GS ++PD LRFD +H + +T  E++ +E  VND+I
Sbjct: 562 AANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERLVNDLI 621

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            Q++P+   R    E+A   GA AL G KY D+VRVV          S   CGG H  ST
Sbjct: 622 RQDIPLDEHRDTPIEEAKEMGAVALFGEKYGDKVRVVRFGP------SCEFCGGIHAKST 675

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I L  I+SESS+ AG+RR EAITG++    +   ++ +K++ S    +  ++ G +E+
Sbjct: 676 GRIGLFKIISESSVAAGVRRFEAITGRQCEEAMYAIEDTVKAIRSLFN-NAKDLKGVIEK 734

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E+  ++    + + Q               +  V  +  ++  +D    K ++  ++
Sbjct: 735 YMDEHATMRKEIEQFQAQAVQRTKDELIKRAETVNGVTVIKAVLP-IDGNAAKDLVFKIR 793

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875
           + I S ++ ++G + ++K  + +++++D++     NA  + R +AK++ GG GGG+PH A
Sbjct: 794 EAIPSHLLCVIGSTAQQKPLLSVMLSDDMVKEQGLNAGQMVREAAKLIQGG-GGGQPHFA 852

Query: 876 QSGGPNGNKADQAIAGVASF 895
            +GG N +    A+  V   
Sbjct: 853 SAGGKNVDGISAAVDKVIEL 872


>gi|326329808|ref|ZP_08196128.1| alanine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325952394|gb|EGD44414.1| alanine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 894

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/926 (35%), Positives = 485/926 (52%), Gaps = 71/926 (7%)

Query: 3   NVSSIRTTFLEFFQKN----GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           + + IR  F   F +N     H ++PS+SL+  +DP L+F N+GMVPFK  F GQ  P Y
Sbjct: 5   STAEIRRRFTAHFAENTEIGEHTVVPSASLL-LDDPNLLFVNAGMVPFKPFFLGQATPPY 63

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
              T+VQKC+R      D++ VG+T RH TFFEM GNFSFG YFKE AI LAW+L+TK  
Sbjct: 64  PRATSVQKCIRT----PDIEEVGKTTRHGTFFEMCGNFSFGDYFKEGAITLAWELVTKSV 119

Query: 118 ----FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
               F  D+  LY +V + DEEA  LWKK+SGL  D+I+R+  ++N+WSM   GP GPCS
Sbjct: 120 ADGGFGFDESVLYPSVLNGDEEAVALWKKVSGLPDDRIVRLPPSENYWSMGVPGPGGPCS 179

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQ---------FEQQNKQERFILPKMSI 224
           EI  D+G          + +  RY+E WNLVFMQ         ++         L +  I
Sbjct: 180 EILIDRGPEFGADRDWDAGD--RYLEFWNLVFMQDNVVAARSKYDVDIDG---PLAQTGI 234

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSS 282
           DTG+GLER+A ++Q K+N Y+ D+   +I+ + ++TG KY     + V  RV+ DH+RSS
Sbjct: 235 DTGLGLERVAYLMQGKSNMYETDVVFPVIEKAMELTGKKYGAAYEDDVRFRVVADHVRSS 294

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
             LI DG+ P NEGRGYVLRR+MRRA+   RLLGY +P M  LLP    +MG  Y +L  
Sbjct: 295 LMLIGDGVTPGNEGRGYVLRRLMRRAIRNMRLLGYEDPAMPELLPISRDKMGETYTDLHT 354

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDI 400
               I+    +E+E F KTL  G  + D   + +         GD AF+L+DT+G P+D+
Sbjct: 355 EWDRIKRVADAEEEAFRKTLAAGTQIFDLAATEVKSSGSTTFTGDKAFQLHDTYGFPIDL 414

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIG 459
             ++    GL  +D   F   + EQR RA+A +        +  ++  + +  G T +  
Sbjct: 415 TLEMAAEAGLE-VDEAGFRGLMTEQRERAKADARAKKGQHADLTVYRGILDTNGPTDWQA 473

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y  L                          S   A++++G+ V+     +  E+V D+TP
Sbjct: 474 YTTLD-----------------------TESKPVALLREGKPVDVLGPEEIGEIVLDRTP 510

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS-LVLTIDYQ 578
           FYAE+GGQ  D G    DG RL++ DVQ+  +G+ VH   V  G      S +   +D +
Sbjct: 511 FYAESGGQSADAGIIEFDGGRLEVVDVQRPVKGLVVHQVRVVDGEFHGGESLVHAKVDPE 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      HS TH++H AL  +LG    Q+GS   P  LR D   +K +T  ++  IE+ 
Sbjct: 571 WRLGARQAHSGTHVVHAALREVLGPTALQSGSFNRPGYLRLDYGWTKGLTPEQMHEIEEV 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGT 697
            N+ +  +LPV    M    A   GA AL G  Y+D +VRVV +    GG  S  LCGGT
Sbjct: 631 SNNALRADLPVSWDYMTLPQAKEWGAIALFGETYDDSKVRVVEI----GGPWSRELCGGT 686

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV  + +I  + + SE+S+ +G RRIEA TG     +L  + + +  L   LK   G+VV
Sbjct: 687 HVDHSAQIGTIVVTSEASVGSGNRRIEAYTGVEGFKYLARERDVVSELNLLLKTKSGDVV 746

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSV 812
           GRV ++ E  +  +   A+ +    +        S   +  V  ++  +  V   + +++
Sbjct: 747 GRVSDLMERLKAAEKEIARARTAQLLASGGSIAASAVDVNGVQVVAQRVPGVGGGDARTL 806

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ ++      ++L G + +K A V  V    +     A DL +  A V+ GG GGG
Sbjct: 807 AQDVRSRLGDAPAAVVLFGDADDKVAVVAAVNPAGIAKGVKAGDLIKELAPVV-GGRGGG 865

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P  AQ GG    + D+A+A V S +
Sbjct: 866 KPDFAQGGGTEVGRIDEAVAKVKSLV 891


>gi|163786078|ref|ZP_02180526.1| alanyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
 gi|159877938|gb|EDP71994.1| alanyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
          Length = 870

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/919 (34%), Positives = 467/919 (50%), Gaps = 73/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR+ FL FF+   H ++PS+ ++  +DPTLMF NSGM PFK  F G   P    +
Sbjct: 1   MKSQEIRSKFLNFFEGKQHLIVPSAPMVLKDDPTLMFVNSGMAPFKEYFLGNADPKKNRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYGID 120

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  LY+TV++          D+EA+ LWK+   +  D+I+     DNFW M + GPCGPC
Sbjct: 121 KDMLYVTVFEGSNDADNLKMDQEAYDLWKEF--IPEDRILMGNKKDNFWEMGDQGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + +EIWNLVFMQ+ ++  +    LP   IDTGM
Sbjct: 179 SEIHVDIRSEEEKSKVDGKSLVNMDHPQVVEIWNLVFMQYNRKANKSLETLPNKHIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ   +NYD D+F  +I+  E +T   Y  +    V  RVI DH+R+ +F I
Sbjct: 239 GFERLCMVLQGVQSNYDTDVFTPIIREIEAITHKDYGKDEKVDVAIRVISDHVRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K 
Sbjct: 299 ADGQLPSNNGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVNILSKKMGKAFPELKAQKQ 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LIE  ++ E+  F +TL++GLVLLDG++    K + ++G   F+L DT+G P D+   IL
Sbjct: 359 LIENVIKEEESSFLRTLEQGLVLLDGIV-KTSKTKEISGSKVFELKDTYGFPEDLTDLIL 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G        +N    +   +A+       S      W  L       +FIGYD L  
Sbjct: 418 REKGYT------YNAEEFKTSLKAQQDRGREASELKSDDWTILHHDEVE-EFIGYDTLEA 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +   RK                           V     G+  ++VF+ TPFY E G
Sbjct: 471 HVKITRYRK---------------------------VTSKKDGEMYQLVFNITPFYPEGG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G    +   +      KK   + +H    +     ++  L   +D + R +   
Sbjct: 504 GQVGDKGYLEDEHGDVVYILDTKKENNLIIH--FTKNLPKHSDEVLKAVVDIKQRYRTEC 561

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG HV Q GS +    LRFD +H   +T  EL+ +E+ VN  I  
Sbjct: 562 NHTATHLLHQALREVLGDHVEQKGSAVHSKHLRFDFSHFSKLTLEELRDVENFVNSRIEG 621

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            LP+   R + +E AIA GA +L G KY D VR +          S  LCGGTHV++T +
Sbjct: 622 KLPLEENRSVPKEQAIADGAMSLFGEKYGDNVRTIRFG------QSIELCGGTHVNNTAD 675

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SES++ +GIRRIEAIT    +      +     +   L  +    +  ++ + 
Sbjct: 676 IWHFKITSESAVASGIRRIEAITNDAVKDFYFENNRVYFEMKDLLN-NAKEPLKALQNLQ 734

Query: 765 EEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E   L+       K K +    +L     +I  V F++  + ++D+  +K V   L  +
Sbjct: 735 DENTDLKKQIENLLKDKAKNIKGELKNELTEINGVQFLAKKL-DLDAGGIKDVSFELGSQ 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            ++ + +L G     KA +   ++++L+     NA  + R   K + GGG GG+P  A +
Sbjct: 794 FKN-LFLLFGSENNGKAILSCYISKELVASKDLNAGTIVRELGKHIQGGG-GGQPFFATA 851

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N    D A+    ++L
Sbjct: 852 GGKNPAGIDAALKAAKNYL 870


>gi|227484973|ref|ZP_03915289.1| alanine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237128|gb|EEI87143.1| alanine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 872

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/913 (35%), Positives = 498/913 (54%), Gaps = 56/913 (6%)

Query: 1   MSNV--SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M N+  + +R ++LEFF  +  H LL S  L P +D TL+  N+GM P K  FTG+ K  
Sbjct: 1   MKNLGMNELRKSYLEFFGNEKNHTLLKSFPLTPIDDDTLLLINAGMAPLKKYFTGELKMK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T+ Q+CVR G    D++ VG+T RH TFFEMLGNFSFG YFK  AI  A++ LTK+
Sbjct: 61  NNRATSSQRCVRTG----DIERVGKTERHGTFFEMLGNFSFGDYFKREAINWAFEFLTKK 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
            ++++  L++TVY +D+EA+ +W    G+ A++I+R    DNFW + E GPCGPCSEI+ 
Sbjct: 117 LEINKDDLWVTVYYDDDEAYNIWHDEIGMPAERILRQGKEDNFWEL-EVGPCGPCSEIYV 175

Query: 178 DQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           D+G             ++  +R++E+WNLVF QF + N+     L   +IDTGMGLER+A
Sbjct: 176 DRGPERAVDENDNQPGNDNSDRFMEVWNLVFTQFNKDNQGNYTNLSHPNIDTGMGLERIA 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
            +LQ K N ++ID+ K +I   E+++G  Y     + V+ RVI DH ++ +FL++DG++P
Sbjct: 236 MILQGKDNIFEIDVMKEIISEIEKLSGKTYKANKVDDVSIRVIADHAKAMTFLVSDGVIP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRR++RRA  + +LLG   P +  ++  +       Y EL+     I + + 
Sbjct: 296 SNEKRGYVLRRLIRRAYRHGKLLGIEGPFLNKIVDKVIETYKVEYDELVDNMDNIHKVIS 355

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF KT+++GL  LD +++ + K+   IL+G  AFKLYDT+G PLD+ ++IL  + L
Sbjct: 356 DEEDRFQKTINQGLEKLDSLIADMEKNNIKILDGSEAFKLYDTYGFPLDLTKEILEEKNL 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +E QR+ AR           + +   L +    T F GY+         
Sbjct: 416 DVDD-EKFEEEMENQRNLARNARKTDNKHKHDNL---LADHLEKTDFQGYENFD------ 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                            +   + AI   GE      +  K  +V D+T FY E GG++ D
Sbjct: 466 -----------------LEGKLLAIFVDGEENSSIKAPNKGIIVSDKTSFYPEGGGEVAD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG         ++ DVQKK + IF +   V  G           ID + R  +  NHSAT
Sbjct: 509 TGFIKTSNACAKVVDVQKKNDIIFHY-VEVTEGEFVRGSVARFVIDLERRLDIQRNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG +++Q GS +  D LRFD T++K +++ EL+ IE+ +N  I + LPV 
Sbjct: 568 HLLDKALKNVLGQNINQAGSLVDEDKLRFDFTYNKALSNEELRKIEEEINAKIREQLPVK 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ + +   GA AL   KY D VRVVS+     G +S  LCGG HV++T E+++  I
Sbjct: 628 KEYMDYKKSEELGAVALFEDKYKDIVRVVSM-----GDYSIELCGGCHVNNTAEVLMFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SESS  AG+RRIEAITG+     L+ ++  +K +A+ L  +  N+  ++  +  E    
Sbjct: 683 KSESSAAAGVRRIEAITGKAVFEELISKENTIKEIANDLDANINNIKSKINSLKSEIASK 742

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                + K Q N +          K+  VN +          EL+ + +  + +  + +I
Sbjct: 743 DSEIKRLKSQSNKDVYSELKSKIEKVNGVNLLIAKFDNASVDELRELENKFKNEYDNLVI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   +S   K    + V ++L D++NA  + R  A++ GG G GG+ + AQ+GG + +  
Sbjct: 803 IFATVS--DKIIFTVSVDDNLTDKYNAGKIVREIAQITGGNG-GGKKNFAQAGGSDISAL 859

Query: 886 DQAIAGVASFLKK 898
           D+A+      +K+
Sbjct: 860 DKALKRAYEIIKE 872


>gi|315022567|gb|EFT35594.1| alanyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
 gi|325335524|gb|ADZ11798.1| Alanyl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 867

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/918 (35%), Positives = 498/918 (54%), Gaps = 75/918 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+   H ++PS+ ++  +DPTLMF+NSGM  FK+ F G + P    +
Sbjct: 1   MTSQQIRQAFLDFFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKTPKAPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD+VGR   HHT FEMLGN+SFG YFK  AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGNYFKREAIAFAWELLTEVYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+T+++         D+EA+  WK    ++ D+I+     DNFW M E+GPCGPCS
Sbjct: 121 KENLYVTIFEGDATENLERDQEAYNCWKSY--IAEDRILNGNKKDNFWEMGESGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +++  + IE+WNLVFM+F ++       LP   +DTGMG
Sbjct: 179 EIHIDLRSEEEKSKVSGKDLVNQDHPQVIEVWNLVFMEFNRKADGSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFL 285
            ER+   LQ KT+NYD D+F  LI   EQ++  KY    +    +  RV+VDH+R+ SF 
Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIAKVEQLSHKKYEGLLDNEKDIAIRVVVDHIRAVSFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y+   L   E  +  L+  L  +MG+ +PE+ + +
Sbjct: 299 IADGQLPSNTGAGYVIRRILRRAISYSYRFLDMKEAFLYELVAVLKNQMGAFFPEIEKQE 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQ 402
            L+ E ++ E+  F KT++ GLV L+ ++       ++ L G   F+LYDT+G P D+ +
Sbjct: 359 KLVTEVIKEEENSFLKTIEHGLVRLENIIQETLKKGEKTLPGAEVFELYDTYGFPADLSR 418

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            I   +GL  +D   F++ +E+Q+ R++         + +K++  +  K     F+GYD 
Sbjct: 419 IIAEEKGLT-VDEKGFDEEMEKQKQRSKKS-------SAQKVYDWVTLKDETESFVGYDQ 470

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L    F+ + RK+                            E   G   +VVF+QTPFYA
Sbjct: 471 LEHKVFITKYRKL----------------------------ENKDGVFYQVVFNQTPFYA 502

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GD G    +  + ++ D +K+          + +   +   ++V +     RR 
Sbjct: 503 EGGGQVGDKGYIESEEGQFEVLDTKKENNLNISLIKDLPQAPEKEFTAVVDSRL---RRN 559

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHSATHLLH AL  +LG+HV Q GS +  D LRFD +H   ++  E+  +E+ VN  
Sbjct: 560 TQANHSATHLLHEALREVLGTHVEQKGSFVGADYLRFDFSHFSKMSDEEIALVEEKVNAK 619

Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +N+ +   R +  ++A+  GA AL G KY D VR++          S  LCGGTH  S
Sbjct: 620 IKENISLQEYRNIPIQEALDKGAMALFGEKYGDNVRMIQFGS------SKELCGGTHAKS 673

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI L  IVSESS  AGIRRIEAI+ ++A ++    +E++  L+  LK    +V   VE
Sbjct: 674 TSEIGLFKIVSESSTAAGIRRIEAISSEKANAYFKELEEQMTQLSLALKTK--DVQKSVE 731

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQ 817
           ++ EE +KL+      K +L   + +  K      +   +   ++ +D+  +K ++  L+
Sbjct: 732 KLLEENQKLKSELEAIKKELAKNETADWKNQFVSKEGKNLLVKMTSLDAASVKDIVFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K++ + +I+++      K  + + V++DL D +NA  + +  AK + GGG GG P  A +
Sbjct: 792 KEVPTSVIVILS-DANDKPMISVGVSDDLGDSYNAGVIVKELAKEIQGGG-GGNPGFATA 849

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N     +A     S 
Sbjct: 850 GGKNLEGLPKAYEKAQSL 867


>gi|282859190|ref|ZP_06268312.1| alanine--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282588009|gb|EFB93192.1| alanine--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 885

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/935 (34%), Positives = 485/935 (51%), Gaps = 88/935 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++ +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  + 
Sbjct: 1   MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     L
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA + W K   L AD II    +DNFW M + GPCGPC
Sbjct: 121 DPKDLYVTVFEGSPEENIPRDDEAAQYWLK--HLPADHIIDGNKHDNFWEMGDIGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           +EI  D           G    +++  + IEIWN VFMQF ++       L    IDTGM
Sbjct: 179 TEIHIDSRPENERNGIPGRELVNKDDPQVIEIWNNVFMQFNRKADGSLEPLAMNVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNHR 273
           G ER+  +LQ K +NYD D+F+ +I+  E ++  KY                    V  R
Sbjct: 239 GFERLVRMLQGKHSNYDTDIFQPIIKEIEAISNFKYGFTTPSGKDGECANDQEKVDVAMR 298

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332
           VI DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  M  LLP L  E
Sbjct: 299 VIADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNQREAFMFKLLPTLVRE 358

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKL 390
           MG AYPEL   + LI   ++ E++ F +TL++G+ LL G +  L       L+G  AF+L
Sbjct: 359 MGGAYPELPAQQELIGRVIKEEEDSFLRTLEKGISLLSGAMDELKAHNQTELDGKEAFRL 418

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + I    G   +D   F++ + +Q++RAR  ++          W  +K+
Sbjct: 419 FDTYGFPLDLTELICRENGYT-VDEKQFDEEMAQQKARARNAAV-----VENGDWMIVKD 472

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G  +F+GYD       +   RKV  +K                               
Sbjct: 473 --GEQEFVGYDYTEYECHILRYRKVTQKKNSF---------------------------- 502

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V D TPFY E GGQ+GD G  + +   +++ D +++          +       E  
Sbjct: 503 YEIVLDYTPFYGEMGGQVGDQGVLVSEDETIEVIDTKRENNQSVHIVKEM---PKDIEAD 559

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D   R   + NH+ATHLL +AL  +LG H  Q GS ++P  LRFDV+H + IT  
Sbjct: 560 FMACVDTDKRNASAANHTATHLLDYALKQVLGEHAEQKGSYVSPTTLRFDVSHFQKITDE 619

Query: 631 ELKSIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           EL+ +E  VN++I +  +    R    ++A   GA AL G KY D+VRVV          
Sbjct: 620 ELRQVERLVNELIREDYILDEHRNTPIDEAKKMGAVALFGEKYGDKVRVVKFGP------ 673

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   CGG H +STG I    IVSESS+ AGIRRIEA+TG  +   +  Q++ L  L +  
Sbjct: 674 SCEFCGGIHATSTGRIGFFKIVSESSVAAGIRRIEALTGANSEEAIYDQEDTLTELKAMF 733

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEV 804
             +  ++   V++  +E+  ++      + Q              ++  +N +  ++  V
Sbjct: 734 N-NPKDLKAVVQKYIDEHEAMKKEMESSRQQGVARHAKALIEGVEQVDGLNIVKAVL-NV 791

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKV 862
           D+   K ++  +++ I   ++ ++G   + +  + I++++D++     NA  + R +A++
Sbjct: 792 DAASAKDIVFKVREAITEKLVCVLGSVNDNRPQLSIMLSDDMVKEGGKNAGKIIREAAQL 851

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + GG GGG+PH AQ+GG + +    A+      LK
Sbjct: 852 IKGG-GGGQPHYAQAGGKDASNLSAAVDKALELLK 885


>gi|78185740|ref|YP_378174.1| alanyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|78170034|gb|ABB27131.1| alanyl-tRNA synthetase [Synechococcus sp. CC9902]
          Length = 899

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/907 (35%), Positives = 498/907 (54%), Gaps = 53/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR+ FL F+++ GH+++ S+SLIP  DPT++ T +GM+PFK +F GQ++      T
Sbjct: 25  TGAEIRSAFLRFYEERGHKVMASASLIPE-DPTVLLTIAGMLPFKPVFLGQQERPAPRAT 83

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ + +D 
Sbjct: 84  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVYGIDP 139

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 140 KHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 199

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ+  N
Sbjct: 200 L-GDEGIDLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 258

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+    G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 259 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 318

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P ++ +  A    +  A+P +++ + +I   L+ E+ RF 
Sbjct: 319 ILRRLLRRVVRHGRLLGINKPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 378

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL    K   ++G  AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 379 ETLERGEKLLSEVLDSKPKQ--ISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 435

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E+QR RA+A ++ +     + I   +     AT F GY  L                
Sbjct: 436 EAMEQQRQRAKAAAVSIDLTLQDAID-QVVATQKATAFQGYQRLEQP------------- 481

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+A+V  GE    A +G  V++V + TPFY E GGQ+GD G   G  +
Sbjct: 482 ----------SCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 531

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +   +   ++  +FVH   +ERG L    ++   +D   RR+   NH+ATHLL  AL  
Sbjct: 532 -IVAIESVSRSRDVFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 590

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD    + +T+ +L  IE  +N  IA+   ++   M  + A
Sbjct: 591 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLGQIETLINGWIAEAHGLLVEEMAIDQA 650

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV ES + AG
Sbjct: 651 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVGESGVAAG 705

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G     +L  ++  +K L    K   G +V RV  + +E +         + 
Sbjct: 706 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 765

Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI---- 830
           +L V            I     +   +  VD   L+    +L  ++  G  +++G     
Sbjct: 766 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGTGLQGAAQSLAAQLGDGAAVVLGGLPDP 825

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S + K  ++    +D++  +  A       AK+ GGGG GGRP++AQ+GG +G     A+
Sbjct: 826 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGG-GGRPNLAQAGGRDGAALAGAL 884

Query: 890 AGVASFL 896
                 L
Sbjct: 885 ETARMEL 891


>gi|301300923|ref|ZP_07207095.1| alanine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851522|gb|EFK79234.1| alanine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 880

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/920 (35%), Positives = 505/920 (54%), Gaps = 62/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+FF+  GH+++ S+ LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  +
Sbjct: 61  HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITVY ED++A K W +  G+    I      DNFW + E GP GP SEIF
Sbjct: 117 WFDMDKEKLYITVYPEDKDAKKYW-EEVGVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 172

Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           FD+G+ +        E        RY+EIWN+VF +F  +       LP  +IDTGMGLE
Sbjct: 173 FDRGQEMNNLPEDDPESYPGGENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIAD 288
           R+ +V Q    N++ DLF  +I+ + +++  K  G N    V+ +VI DH R+ +F I D
Sbjct: 233 RVVSVFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAIGD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M SAYPE+++    IE
Sbjct: 293 GALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + ++ E++RF  TL  G+ LLD +++   ++  + L G   FKLYDT+G PL++ ++   
Sbjct: 353 KIIKMEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEYAN 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   FN+ +E+Q++RARA      S   +     L +    ++++GY  L+  
Sbjct: 413 DEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL--LTDITTPSEYVGYHELK-- 467

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 + ++K I+   E+V+   +  + +V+FD+TPFYAE GG
Sbjct: 468 ---------------------ANGVLKDIIIDNELVDTVPADSRAQVIFDKTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    +  + A      H I     +  E +  L +D     ++  
Sbjct: 507 QVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKEMTRENTYSLEVDVAFHNKVKK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LGSH  Q GS + P  LRFD T+   +T+ +LK IED VN  I +
Sbjct: 567 NHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIEDIVNAKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V T + ++E A   GA AL G KY D VRVV V     G +S   CGGTHV++T EI
Sbjct: 627 NIQVETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCGGTHVANTNEI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764
            L  IVSES + AG+RRIEA+T + A   L  +++ L+  A  LK V    V  ++E++ 
Sbjct: 682 GLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIKEVPRKIEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           E+ + L+      + +   +       +  +I     ++  ++     +L+ + D  ++K
Sbjct: 742 EQVKLLEQQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVSGMSQLRQLADQWKEK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   + + K +++  ++ D +   + A DL +  A  +GGGG GGRP +AQ+G
Sbjct: 802 QLSDVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKVGGGG-GGRPDLAQAG 860

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G       +A+     +L K
Sbjct: 861 GKKPEGIQEALKAAEDWLNK 880


>gi|205830481|sp|Q3AVV3|SYA_SYNS9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 890

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/907 (35%), Positives = 498/907 (54%), Gaps = 53/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR+ FL F+++ GH+++ S+SLIP  DPT++ T +GM+PFK +F GQ++      T
Sbjct: 16  TGAEIRSAFLRFYEERGHKVMASASLIPE-DPTVLLTIAGMLPFKPVFLGQQERPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ + +D 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVYGIDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ+  N
Sbjct: 191 L-GDEGIDLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+    G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P ++ +  A    +  A+P +++ + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGINKPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL    K   ++G  AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 370 ETLERGEKLLSEVLDSKPKQ--ISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E+QR RA+A ++ +     + I   +     AT F GY  L                
Sbjct: 427 EAMEQQRQRAKAAAVSIDLTLQDAID-QVVATQKATAFQGYQRLEQP------------- 472

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+A+V  GE    A +G  V++V + TPFY E GGQ+GD G   G  +
Sbjct: 473 ----------SCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 522

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +   +   ++  +FVH   +ERG L    ++   +D   RR+   NH+ATHLL  AL  
Sbjct: 523 -IVAIESVSRSRDVFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 581

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD    + +T+ +L  IE  +N  IA+   ++   M  + A
Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLGQIETLINGWIAEAHGLLVEEMAIDQA 641

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV ES + AG
Sbjct: 642 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVGESGVAAG 696

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G     +L  ++  +K L    K   G +V RV  + +E +         + 
Sbjct: 697 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 756

Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI---- 830
           +L V            I     +   +  VD   L+    +L  ++  G  +++G     
Sbjct: 757 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGTGLQGAAQSLAAQLGDGAAVVLGGLPDP 816

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S + K  ++    +D++  +  A       AK+ GGGG GGRP++AQ+GG +G     A+
Sbjct: 817 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGG-GGRPNLAQAGGRDGAALAGAL 875

Query: 890 AGVASFL 896
                 L
Sbjct: 876 ETARMEL 882


>gi|260663392|ref|ZP_05864283.1| alanyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|260552244|gb|EEX25296.1| alanyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
          Length = 882

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/915 (34%), Positives = 491/915 (53%), Gaps = 61/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  +L+FF ++GH  +PS SL+P NDPTL++ NSG+   KN F G+  P    +T
Sbjct: 8   NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEM+GNFS G YFK+ AI  AW+LLT  + F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A + W   +G+  D +  +   DNFW + + GP GP +E+F+D+G
Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHL--LADQDNFWDIGQ-GPSGPDTEVFYDRG 179

Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           + +        E        RY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 180 QEMNNLPEDDPESYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  LI+  E  +  K  G N    V  ++I DH+RS +F I DG LP
Sbjct: 240 IFENAKTNFETDLFMPLIKQVEVFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RR++   + LG  EP +  ++P +   M   YP++++    I   + 
Sbjct: 300 SNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASVIS 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF  TL+ GL LL+ V+    + +   ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 360 SEEDRFSATLNGGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADEGL 419

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR    +  G G    +W +  +    ++++GY  L      
Sbjct: 420 T-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTD---ESKYVGYTDLVVD--- 472

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              ++ V  +   G+  ++A  GQ+V+V+FDQTPFYAE GGQ+ 
Sbjct: 473 -------------------NAKVIGLAADGKQADQAEPGQQVDVIFDQTPFYAEMGGQVA 513

Query: 530 DTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           DTG  I +  ++  T    + A      H +     ++      L +D     ++  NH+
Sbjct: 514 DTGQVIDNYGKVVATVKDVQHAPHQQNLHTLELTAPIKKGARYKLVVDRARHLKIEKNHT 573

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS +    LRFD  H   +T  +LK +ED VN+ I + +P
Sbjct: 574 ATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWKEIP 633

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T EI L 
Sbjct: 634 VTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEIGLF 688

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767
            IVSE  + AG+RRIEA+T   A + +  + + L  +A+ LKV     V  RV E+ ++ 
Sbjct: 689 KIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQDQL 748

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++    +   + +L  +          + A    ++  +      +L+ + D  ++K  S
Sbjct: 749 KEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMADDWRQKDYS 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++L   + + KA++L+ V + L     A DL +  A  + GG GGGRP +AQ+GG N 
Sbjct: 809 DVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAINGG-GGGRPTLAQAGGKNP 866

Query: 883 NKADQAIAGVASFLK 897
               +A+   + F+ 
Sbjct: 867 AGISEALKLASQFMN 881


>gi|303232757|ref|ZP_07319442.1| alanine--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302481243|gb|EFL44318.1| alanine--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 883

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/917 (34%), Positives = 491/917 (53%), Gaps = 64/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  G +  PSSSLIP +DP+L+  N+GM  FK  + G +       
Sbjct: 9   MTTAQIRENFLQFFESKGCKRYPSSSLIP-DDPSLLLANAGMNQFKEYYQGIKTMREIGA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKC+R     ND++N+G   RH +FFEMLGNFSFGGY K +AI  AW+ +T  +   
Sbjct: 68  TSCQKCLRT----NDIENIG-DARHLSFFEMLGNFSFGGYTKAQAIAWAWEFITSPEHLG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + RLY+TV+  D+EA +LW++  G+    I R+   DNFW+   TGPCGPCSEI+FDQ
Sbjct: 123 LPKDRLYVTVFTNDDEACELWQEQ-GVDLSHISRLGEEDNFWAAGPTGPCGPCSEIYFDQ 181

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G    G  P   ++G+RY+E WNLVF QF++Q       LP  +IDTGMGLER+A ++Q 
Sbjct: 182 GPEFEGEKP--GDDGDRYLEFWNLVFTQFDRQEDGSMPELPHRNIDTGMGLERIAAIMQH 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +NY+ D+ + LI   E+++  +Y        + R++ DH R+ +F+I DGILP NEGR
Sbjct: 240 QGSNYEGDVLRTLIAVGEKLSNKRYHETAATDKSLRILADHARACTFMIGDGILPGNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + RLLG     M      +   M ++YP+L + K  I+  + +E++R
Sbjct: 300 GYVLRRLLRRAIYHGRLLGIRGEFMRTYTHEVMRLMATSYPQLTEGKDRIDAIVSAEEQR 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TLD G  LL+  L+ L   + L+G+VAFKL+DT+G P+D+    +        D+ +
Sbjct: 360 FCATLDAGEALLNKELAQLPSGKPLSGEVAFKLHDTYGFPIDLTC-EIAENAQHPTDMDT 418

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN  +E+Q++RARA +     G    IW SL ++   T+F+GY                 
Sbjct: 419 FNALMEDQKARARAQANRDAWGQANSIWASLSDELSETEFLGYTQNSCDD---------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V A+V+ G +V  A  G  V+V+ D+TPFY E GGQ+GDTG     
Sbjct: 469 ------------ARVLALVRDGALVPSASCGDVVDVILDKTPFYGERGGQVGDTGTLRCG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              L + D Q +A  + VH   V++G +    ++   ID   R  +  NH+ATHLL  AL
Sbjct: 517 ESVLHVDDTQHQAHILIVHTCTVQKGSIAKGDTVSAQIDVTRRELIRRNHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HVSQ GS + PD LRFD TH + +T  ++  +E  VN  I    P+VTR++   
Sbjct: 577 KQVLGKHVSQAGSLVAPDRLRFDFTHFEALTRDQIDQVEAIVNREIFAAEPMVTRVVPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  + A AL    Y+  VR+V     +  V+S  LCGGTHV +T +I    I+SE+S+ 
Sbjct: 637 EARKTDAIALFDEMYDADVRIVQTGSSEDAVYSRELCGGTHVRNTADIGYFKIISETSVG 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + +RR+EA+T   A  ++  +  +L  LAS LK  + +V+ RV+++              
Sbjct: 697 SNVRRLEALTSCGAYEYVDAKLSELGQLASMLKCREDDVLARVDQLKSSLSAADKKLKAA 756

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK--KIQSGIIMLVGI 830
               + + +     S +  +    +   +  V++K+L+S+ D +++         +L   
Sbjct: 757 LSGSSSDQVSSAVSSAYNKSGYKLVIAHVQHVEAKDLRSMWDGIRQCMNQTPCACVLASS 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLAR----------LSAKVLGGGGGGGRPHMAQSGGP 880
           + EK A +     + +   F+A  + +               +            Q+GG 
Sbjct: 817 TGEKAALLAAATDDAIAAGFDAAQVIKAIAGAIAGHGGGKAAMA-----------QAGGT 865

Query: 881 NGNKADQAIAGVASFLK 897
           N    D A+A   + L 
Sbjct: 866 NAQGIDDALAQARTLLN 882


>gi|256847960|ref|ZP_05553404.1| alanyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715020|gb|EEU29997.1| alanyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 883

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/917 (34%), Positives = 496/917 (54%), Gaps = 62/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF ++GH+ +PS SL+P +DPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   NSAQVRRMYLDFFIQHGHKEMPSRSLVPVDDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+  I  AW+LLT  + F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKKEVIPWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+T Y +D +A+  W+  +G+  + +I+    DNFW + + GP GP +EIF+D+G
Sbjct: 124 DPEKLYVTYYPKDHDAYNYWRA-AGVPENHLIQ--NKDNFWDIGQ-GPSGPDTEIFYDRG 179

Query: 181 EC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +                E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 180 QEMNNVAEDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  LI+ +E  +  K  G N    V  ++I DH+R+ +F I DG LP
Sbjct: 240 IFENAPTNFETDLFMPLIKQTETFSQNKQYGQNAADDVQFKIIADHIRTITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   ++
Sbjct: 300 SNMGRGYVIRRLLRRAVVTGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASVIK 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE+ERF  TL+ GL LL+ V+    ++    ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 360 SEEERFSTTLNGGLNLLNNVIDDAKQNGTNEIDGKTAFKLYDTYGFPIELTKEYASDEGL 419

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR    +  G G    +W    E    ++++GY  L      
Sbjct: 420 T-VDQSGFEAAMTEQQNRARNARDIDNGMGVQTDVWTDFTE---PSKYVGYHQLSVE--- 472

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQL 528
                              ++ +  +   G+ V+EA      +EV+FD TPFYAE GGQ+
Sbjct: 473 -------------------NAKIIGLTADGQHVQEADPQADDIEVIFDVTPFYAEMGGQV 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            DTG      G ++      + A      H +     ++      L +D     ++  NH
Sbjct: 514 ADTGDIIDNYGHQVGRVVDVQHAPHQQNLHRVKLTAPIKLGAKYRLVVDRIRHLKIEKNH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK++E  VND I + +
Sbjct: 574 TATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKAVEKMVNDQIWKEI 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A   GA AL   KY D+VRVV +     G +++  CGG HV +T E+ L
Sbjct: 634 PVTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDHVQNTNELGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEE 766
             IVSE+ + AGIRRIEA+TG  A   +  + + L ++A+ LKVSQ   V  RV+E+  +
Sbjct: 689 FKIVSEAGVGAGIRRIEAVTGSDAFKFMQERTDLLDTVANELKVSQEKEVPHRVQELQTQ 748

Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+  +A  + ++  +  S              ++  ++     +L+ + D  + K Q
Sbjct: 749 LKDLEKDNANLQAKIAAQQASQVFDDVQDTKQGRLIAAELNVAGMGQLRQLADQWRAKGQ 808

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S  ++L   + + KA++L+ V++    +  A DL +  A  + GG GGGRP +AQ+GG N
Sbjct: 809 SDFLVLATANGD-KANLLVAVSDTKAKKVKAGDLIKAIAPAINGG-GGGRPTLAQAGGKN 866

Query: 882 GNKADQAIAGVASFLKK 898
                QA+     +L +
Sbjct: 867 PAGIKQALQQANDYLNQ 883


>gi|313207039|ref|YP_004046216.1| alanyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|312446355|gb|ADQ82710.1| alanyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
          Length = 867

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/918 (35%), Positives = 498/918 (54%), Gaps = 75/918 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+   H ++PS+ ++  +DPTLMF+NSGM  FK+ F G + P    +
Sbjct: 1   MTSQQIRQAFLDFFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKTPKAPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD+VGR   HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGNYFKKEAIVFAWELLTEVYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+T+++         D+EA+  WK    ++ D+I+     DNFW M E+GPCGPCS
Sbjct: 121 KENLYVTIFEGDATENLERDQEAYNCWKSY--IAEDRILNGNKKDNFWEMGESGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +++  + +E+WNLVFM+F ++       LP   +DTGMG
Sbjct: 179 EIHIDLRSEEEKSKVSGKDLVNQDHPQVVEVWNLVFMEFNRKADGSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFL 285
            ER+   LQ KT+NYD D+F  LI   EQ++  KY    +    +  RV+VDH+R+ SF 
Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIAKVEQLSQKKYEGLLDNEKDIAIRVVVDHIRAVSFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y+   L   E  +  L+  L  +MG+ +PE+ + +
Sbjct: 299 IADGQLPSNTGAGYVIRRILRRAISYSYRFLDMKEVFLYELVAVLKNQMGAFFPEIEKQE 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQ 402
            L+ E ++ E+  F KT++ GLV L+ ++       ++ L G   F+LYDT+G P D+ +
Sbjct: 359 KLVTEVIKEEENSFLKTIEHGLVRLENIIQETLKKGEKTLPGAEVFELYDTYGFPADLSR 418

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            I   +GL  +D   F++ +E+Q+ R++         + +K++  +  K     F+GYD 
Sbjct: 419 IIAEEKGLT-VDEKGFDEEMEKQKQRSKKS-------SAQKVYDWVTLKDETESFVGYDQ 470

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L    F+   RK+                            E   G   +VVF+QTPFYA
Sbjct: 471 LEHKVFITRYRKL----------------------------ENKDGVFYQVVFNQTPFYA 502

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GD G    +  + ++ D +K+          + +   +   ++V +     RR 
Sbjct: 503 EGGGQVGDKGYIESEEGQFEVLDTKKENNLNISLIKDLPQAPEKEFTAVVDSRL---RRN 559

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHSATHLLH AL  +LG+HV Q GS +  D LRFD +H   ++  E+  +E+ VN  
Sbjct: 560 TQANHSATHLLHEALREVLGTHVEQKGSFVGADYLRFDFSHFSKMSDEEIALVEEKVNAK 619

Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +N+ +   R +  ++A+  GA AL G KY D VR++          S  LCGGTH  S
Sbjct: 620 IKENISLQEYRNIPIQEALDKGAMALFGEKYGDNVRMIQFGS------SKELCGGTHAKS 673

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI L  IVSESS  AGIRRIEAI+ ++A ++    +E++  L+  LK    +V   VE
Sbjct: 674 TSEIGLFKIVSESSTAAGIRRIEAISSEKANAYFKELEEQMTQLSLALKTK--DVQKSVE 731

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQ 817
           ++ EE +KL+      K +L   + +  K      +   +   ++ +D+  +K ++  L+
Sbjct: 732 KLLEENQKLKSELEAIKKELAKNETADWKNQFVSKEGKNLLVKMTSLDAASVKDIVFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K++ + +I+++      K  + + V++DL D +NA  + +  AK + GGG GG P  A +
Sbjct: 792 KEVPTSVIVILS-DANDKPMISVGVSDDLGDSYNAGVIVKELAKEIQGGG-GGNPGFATA 849

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N     +A     S 
Sbjct: 850 GGKNLEGLPKAYEKAQSL 867


>gi|295132657|ref|YP_003583333.1| alanyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294980672|gb|ADF51137.1| alanyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 869

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/919 (35%), Positives = 490/919 (53%), Gaps = 73/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FLEFFQ   H ++PS+ ++  +DP+LMFTN+GMV FK  F G   P    V
Sbjct: 1   MKSQEIRKSFLEFFQGKSHSIVPSAPMVLKDDPSLMFTNAGMVQFKEFFLGNSVPKNTRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT +F +D
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAINWAWELLTHKFKID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY++V++         D EA ++WKKI  +  D+II     DNFW M + GPCGPCS
Sbjct: 121 KDSLYVSVFEGSEEDGVGLDTEALEIWKKI--VPEDRIIYGNKKDNFWEMGDQGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    + +  + +EIWNLVFMQF ++       LP   IDTGMG
Sbjct: 179 EIHVDIRSPEEKAEKPGKELVNADHPQVVEIWNLVFMQFNRKADGSLEELPAKHIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIA 287
            ER+  V+Q K +NYD D+F  LI   E++T   Y  +   N   RVI DH+R+ +F IA
Sbjct: 239 FERLCMVMQGKQSNYDTDVFTPLITEIEKITNSSYGTSEETNIAIRVIADHVRAVAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+    ++MG A+PEL++ + L
Sbjct: 299 DGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFIYKLVDCTKSQMGEAFPELVKQQQL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE  ++ E+  F +TL++GLV+L+ +++     EI +G  AF+LYDT G P+D+   IL 
Sbjct: 359 IENVIKEEELSFLRTLEQGLVMLENIVTQSKDKEI-SGVKAFELYDTFGFPIDLTALILK 417

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G + ++I  F   L++Q+ R+RA +       +   W  + E      F+GYD L   
Sbjct: 418 EKGYS-LNIAEFEAELKKQKERSRAATQ-----VSSGDWEEINE-VDEDAFVGYDQLETQ 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             + + RK                           VE    G   ++VF +TPFY E GG
Sbjct: 471 VKIAKYRK---------------------------VETKKQGTLYQIVFTKTPFYPEGGG 503

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G       ++ I D +K++  I       ++       S    +D   R + + N
Sbjct: 504 QVGDKGYLTSGEEKISIIDTKKESNQIIH---FAKKLPQNISGSFTAVVDASARTKTAAN 560

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ILG+HV Q GS + P+ +RFD +H   ++S E++ +E  VND I + 
Sbjct: 561 HTATHLLHQALRHILGTHVEQKGSMVQPNYMRFDFSHFSKLSSEEIEKVEQFVNDRIQEG 620

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           L +   R +  + A+  GA AL G KY D VR +          S  LCGGTHV +T +I
Sbjct: 621 LQLEEQRNIAYQHALDQGAIALFGEKYGDSVRAIRFGE------SMELCGGTHVKNTADI 674

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I  ES++ +GIRRIEAITG   + +   Q E L+ +   LK +  + V  +  + +
Sbjct: 675 WYFKITGESAVASGIRRIEAITGDAVKEYFTKQTELLEEVQGLLK-NAKDPVKAISGLQD 733

Query: 766 EYRKLQLIHA-----KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E   L+         K K   +       +I  + F++  + ++D+  +K +   L  +I
Sbjct: 734 ENADLKKQVEALLKDKTKNLKSEIKNEIQEINGIQFLAKKV-DLDAGGIKDLAFQLGGEI 792

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
              + +L G  ++ KA +   ++++L      NA  + R   K + GGG GG+P  A +G
Sbjct: 793 DD-LFLLFGTEQKGKALLSCYISKELVETKDLNAGTIVRELGKYIQGGG-GGQPFFATAG 850

Query: 879 GPNGNKADQAIAGVASFLK 897
           G N     +A+     +++
Sbjct: 851 GKNPAGIPEALKEAKKYIE 869


>gi|291276861|ref|YP_003516633.1| alanyl-tRNA synthetase [Helicobacter mustelae 12198]
 gi|290964055|emb|CBG39895.1| alanyl-tRNA synthetase [Helicobacter mustelae 12198]
          Length = 850

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/898 (35%), Positives = 495/898 (55%), Gaps = 57/898 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL+FFQ  GH++  S  L+P  D +L+FTN+GMV FK+IFTG+   P     T+ 
Sbjct: 3   DIRKKFLDFFQSKGHQVYASMPLVPE-DASLLFTNAGMVQFKDIFTGKIPTPSIPRATSS 61

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+    D+  
Sbjct: 62  QLCIRAGGKHNDLENVGFTRRHHTLFEMLGNFSFGDYFKKEAIAYAWEFVTEVLGFDKEV 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LYI++++ D+EAF++W K   ++ D+I R+   DNFW M +TG CGPCSEIF DQG    
Sbjct: 122 LYISIHESDDEAFEIWSKY--VNPDRIKRMGDKDNFWQMGDTGACGPCSEIFVDQGSSFA 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   +G+R++EIWNLVFMQ+E+++      LPK SIDTGMGLER++ +L+ K +N+
Sbjct: 180 SSEDYFGGDGDRFLEIWNLVFMQYERKSDGTLIPLPKPSIDTGMGLERVSALLEGKESNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  LI+  E++ G  Y   +  ++RVI DH R+ +FL+A G     EGRGYVLRRI
Sbjct: 240 DSHLFMPLIKEVEKLCGKPYHYESGASYRVIADHARAVAFLLAQGSNFDKEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG+       ++  +C EMG  Y  L++ K  I    + E+ERF +T+++
Sbjct: 300 LRRAVRHGYLLGFEGAFFYRIVEKVCEEMGGFYTYLLEQKNFISMQTKMEEERFFETIEQ 359

Query: 365 GLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           G+ L    L  + +  +++ +G++AF+LYDT G PLD+ QD+L    L  +D+  F  ++
Sbjct: 360 GIHLFKKELERMREMGEKVFDGNIAFRLYDTFGFPLDLTQDMLKEENLE-LDLAGFESSM 418

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           ++Q+  A++   G G    +  +  + +++G+  F GY                      
Sbjct: 419 QKQKQLAKSSWKGSGDPLIKGDFKQVLQEFGSNIFNGYTH-------------------- 458

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
              +   S + A+  +    +E +  ++  ++ D TP Y E+GG +GD G  + +G  + 
Sbjct: 459 ---DRHHSKILALFDENLERQEILQ-KEGYILLDTTPLYPESGGAIGDRGVLLENGECIA 514

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                KK  G+ +     ++  L+      + +D+  +  ++ +HSATHLLH  L    G
Sbjct: 515 KILDTKKYFGLNISQISPKK-PLKVGEIYEVLVDHSRQE-IAKHHSATHLLHAILREKFG 572

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           S V+Q GS +  + LRFD +  +PIT  EL  I+D+VN +IA+NLP     M    A   
Sbjct: 573 SQVAQAGSLVEANRLRFDFSFPRPITKEELLEIQDSVNALIAKNLPARVEHMEIGQAKTR 632

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY + VRVVS      G  S  LCGG HV +TG I   YI  E+ + +G+RR
Sbjct: 633 GAIALFGEKYGENVRVVSF-----GEESCELCGGIHVQNTGFIGNFYITKENGVSSGVRR 687

Query: 723 IEAITGQRARSHLMGQDEKL--KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           IEA+ G     +L  ++  L  + +   LK    +++  V ++ E+ + L+      K  
Sbjct: 688 IEAVCGNAG--YLHAKESLLHNQQIKEILKNQ--DMMLGVAKLKEKIKTLEKQLQNPKKD 743

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
            +   L   +I  ++ +  I       E+K ++D  +       I+L+     +K   + 
Sbjct: 744 TS---LQVQQINGISLIVQITEST---EIKKLIDEAKNHYDKVAILLI----NEKNLAIA 793

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             +++      A D  + +A++L GG GGGR   A +GG   +K   A+     + K+
Sbjct: 794 AGSKNT--NIKADDWVKKTAQIL-GGNGGGRDDFATAGGKEHSKIKAALQSAILYAKE 848


>gi|289643307|ref|ZP_06475431.1| alanyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
 gi|289506881|gb|EFD27856.1| alanyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
          Length = 894

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/921 (34%), Positives = 492/921 (53%), Gaps = 62/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I + +L +F   GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+  P Y   
Sbjct: 1   MKSAEIASRWLRYFADRGHTVVPSASLIA-DDPTLLLVNAGMVPFKPYFLGEVAPPYSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKCVR      D++ VGRT RH +FF+M GNFSFG YFKE  I LAW+LLT      
Sbjct: 60  ASVQKCVRT----TDIEEVGRTTRHGSFFQMCGNFSFGDYFKETVIPLAWELLTTPVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L + RL++TVY +D+EA  +W    G+  D+I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLAEDRLWVTVYLDDDEAADIWHSKIGVPTDRIQRLGMEDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +  GERY+EIWNLVFMQ+ +     +   P        +IDTG+GL
Sbjct: 176 YDRGPEF-GAEGGPAVNGERYLEIWNLVFMQYIRGEGSSKKDYPILGDLPSRNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+AT+LQ   N Y+ID  + ++  +  +TG +Y  E  + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLATILQGVDNLYEIDTSRVILDRTSALTGARYGAEHRSDVSLRVVADHVRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+LP NEGRGYVLRR+MRRA+   RLLG  +  M  ++ A    MG  YPEL+  ++ I+
Sbjct: 295 GVLPGNEGRGYVLRRMMRRAIRNMRLLGAHDATMHEMVEATIEAMGPQYPELVTDRVRID 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F +TL  G  + D   S   K    ++ G+  F+L+DT+G P+D+  ++  
Sbjct: 355 SVATAEEAAFLQTLRTGTSIFDLAASETKKAGGSVIPGERVFQLHDTYGFPVDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRG 465
             GL  +D   F + + EQR RA+A +    +G  +   +  +    G + F GYD    
Sbjct: 415 ETGLT-VDEEGFRRLMTEQRQRAKADARAKKTGHVDTSAYRDVLAAAGPSAFTGYD---- 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              +    + V+ ++  G    EA  G  VE+V D+TPFYAE G
Sbjct: 470 -------------------SGAEEARVRGLLVGGAAAREAAQGDDVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G         ++I DVQK    + VH   V  G +     +   ID   R  +S
Sbjct: 511 GQLADAGVIRLADGTEIEILDVQKPLPELIVHRGRVRTGEVTLGADVQAEIDPARRAAIS 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +HSATHL H AL   LG   +Q GS  +P   RFD + +  +  + L  +E+ +N ++ 
Sbjct: 571 RSHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFSAAAAVPPSVLADVEETINQVLT 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M+ + A  +GA A+ G KY+DRVRVVS+     G +S  LCGGTHV  +G+
Sbjct: 631 EDLDVHAEVMDIDQARRTGAIAMFGEKYSDRVRVVSI-----GDYSRELCGGTHVRRSGQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ E+S+ AG+RR+EA+ G  A  +L  +   +  +   LK  + +V  R+ ++ 
Sbjct: 686 LGLVKLLGEASVGAGVRRVEALVGLDAYRYLAREAVLVSQITDVLKAPRADVPERLSQVL 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHI-ISEVDSKELKSVMDALQK 818
              R+ +    K +    +        +   +     ++H       + +L+ +   ++ 
Sbjct: 746 GRLREAEKELEKLRAAQVLAIAGDLARAAEDVGGTALVTHRAADGTSADDLRKLAIDIRG 805

Query: 819 KIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++ +    ++ V  +   +  ++        +R   A +L R +AK+LGGGG GG+  +A
Sbjct: 806 RVPADRPAVVAVAAAASGRPVIVAATNGPARERGIRAGELVRGAAKILGGGG-GGKDDLA 864

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG N +    A+ GV   +
Sbjct: 865 QGGGSNPDAIADALVGVRQAV 885


>gi|184154997|ref|YP_001843337.1| alanyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|227514535|ref|ZP_03944584.1| alanine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|183226341|dbj|BAG26857.1| alanyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|227087092|gb|EEI22404.1| alanine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
          Length = 882

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/915 (34%), Positives = 490/915 (53%), Gaps = 61/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  +L+FF ++GH  +PS SL+P NDPTL++ NSG+   KN F G+  P    +T
Sbjct: 8   NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEM+GNFS G YFK+ AI  AW+LLT  + F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A + W   +G+  D +  +   DNFW + + GP GP +E+F+D+G
Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHL--LADQDNFWDIGQ-GPSGPDTEVFYDRG 179

Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           + +        E        RY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 180 QEMNNLPEDDPESYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  LI+  E  +  K  G N    V  ++I DH+RS +F I DG LP
Sbjct: 240 IFENAKTNFETDLFMPLIKQVEGFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RR++   + LG  EP +  ++P +   M   YP++++    I   + 
Sbjct: 300 SNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASVIS 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF  TL+ GL LL+ V+    + +   ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 360 SEEDRFSATLNGGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADEGL 419

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR    +  G G    +W +  +    ++++GY  L      
Sbjct: 420 T-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTD---ESKYVGYTDLVVD--- 472

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              ++ V  +   G+  ++A  GQ V+V+FDQTPFYAE GGQ+ 
Sbjct: 473 -------------------NAKVIGLAADGKQADQAEPGQHVDVIFDQTPFYAEMGGQVA 513

Query: 530 DTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           DTG  I +  ++  T    + A      H +     ++      L +D     ++  NH+
Sbjct: 514 DTGQVIDNYGKVVATVKDVQHAPHQQNLHTLELTAPIKKGARYKLVVDRARHLKIEKNHT 573

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS +    LRFD  H   +T  +LK +ED VN+ I + +P
Sbjct: 574 ATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWKEIP 633

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T EI L 
Sbjct: 634 VTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEIGLF 688

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767
            IVSE  + AG+RRIEA+T   A + +  + + L  +A+ LKV     V  RV E+ ++ 
Sbjct: 689 KIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQDQL 748

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++    +   + +L  +          + A    ++  +      +L+ + D  ++K  S
Sbjct: 749 KEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMADDWRQKDYS 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++L   + + KA++L+ V + L     A DL +  A  + GG GGGRP +AQ+GG N 
Sbjct: 809 DVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAINGG-GGGRPTLAQAGGKNP 866

Query: 883 NKADQAIAGVASFLK 897
               +A+   + F+ 
Sbjct: 867 AGISEALKLASQFMN 881


>gi|269123200|ref|YP_003305777.1| alanyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314526|gb|ACZ00900.1| alanyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 865

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/911 (35%), Positives = 506/911 (55%), Gaps = 63/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R +F+EFF+   H+   S+SLIP +D TL+ T +GMVPFK+ F G++K  Y  +
Sbjct: 1   MTGNELRKSFIEFFKSKEHKHFESASLIP-DDKTLLLTVAGMVPFKSFFLGEKKAPYNRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     NDL+NVG T RHHTFFEMLGNFSFG YFK  +I+ +W+ +T+   LD
Sbjct: 60  TTYQKCIRT----NDLENVGVTPRHHTFFEMLGNFSFGDYFKRESIKWSWEYITEILKLD 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178
             RLY++VY  D+EA+ +W K  G+  D ++R+  +DN+W+  E G CGPCSEI++D   
Sbjct: 116 PNRLYVSVYLTDDEAYDIWTKEVGVPEDHMVRLGDDDNWWAAGEIGSCGPCSEIYYDTQI 175

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            GE          +EG R++EIWNLVF ++ +        LP+ +IDTG GLER+A+V+Q
Sbjct: 176 MGENNEEINSKPGDEGNRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIASVVQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K+NN++ DLF  +I+  ++V  +K E     + ++I DHL++S+FLI DG+LP+NEGRG
Sbjct: 236 NKSNNFETDLFIPIIENIKEVLSIK-EEEISTSVKIIADHLKASTFLICDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           Y+L++++RRA          +   +   + +++ ++   M  AY EL + +  I+  ++S
Sbjct: 295 YILKKLIRRAYGAGAIENREIFNKSLTFLHNIVDSIIDNMKEAYIELDEKREYIKNIIKS 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+++F +TL  G  +L   +     + I  L  DV+FKLYDT+G P +  + I+      
Sbjct: 355 EEDKFSRTLKSGTEILFEEIKKCKSENISKLPSDVSFKLYDTYGFPFEFTRLIV-ENNKM 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +    FNQ LEEQ  R++   +       ++      ++ G T F GYD L        
Sbjct: 414 IVSEDEFNQKLEEQVKRSQDSRVKNSDMIKDEFIDKFYKENGKTLFTGYDTLND------ 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V  I        + +  +  EV+F++TPFYAE GGQ+ D 
Sbjct: 468 -----------------EAKVLHI--------KNLENELYEVIFNRTPFYAEGGGQIADK 502

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D   +       K   +F+H+   E      E  L   +D + R  +  NH+ATH
Sbjct: 503 GVIKYDNKVIAEVKDVIKKSDVFIHYISGEELKFDIEYILE--VDKKRRNDIKKNHTATH 560

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH  L  +LGS V Q GS ++ DGLRFD ++ + ++  ++  IE+ VN++I +NLPV  
Sbjct: 561 LLHKVLKDVLGSAVEQAGSLVSDDGLRFDFSYYEQVSQEQVNIIENKVNELILENLPVYI 620

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              N  DA+  GA AL   KY D VRV+ +        S  LCGGTHVSSTGEI L  I 
Sbjct: 621 NYENINDAVKKGAMALFSDKYGDVVRVIDISGV-----SLELCGGTHVSSTGEIGLFKIK 675

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE    +GIRRIEA TG ++  ++   ++ ++ +++  K S  N++  + +  EE +  +
Sbjct: 676 SEQGKASGIRRIEATTGYKSLEYVHNLEKDIQDISNKFKTSPVNLIPAINKYREEVKVQE 735

Query: 772 ---LIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                  +R ++  + DL      I  V  +     + D  ELK ++D  ++ ++S +I+
Sbjct: 736 NTIKELQRRLVKFEINDLTNEAIDINGVKVLVKSFKDKDVNELKDLVDRAKEILKSCVIL 795

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                  +KA  +  VT+DL+++++A ++ + +A  +  G GGGRP  AQ+GG +GNK  
Sbjct: 796 FGS--NNEKAIFVSGVTKDLINKYHAGNIVKNAA-TIADGNGGGRPDFAQAGGKDGNKVK 852

Query: 887 QAIAGVASFLK 897
           +A+     ++K
Sbjct: 853 EALEKTLEYIK 863


>gi|229815209|ref|ZP_04445545.1| hypothetical protein COLINT_02255 [Collinsella intestinalis DSM
           13280]
 gi|229809219|gb|EEP44985.1| hypothetical protein COLINT_02255 [Collinsella intestinalis DSM
           13280]
          Length = 884

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/897 (37%), Positives = 504/897 (56%), Gaps = 46/897 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR+ +L FF++ G++L  SSSL+P +DP+L+  N+GM  FK  + G++       
Sbjct: 8   MSTAEIRSAYLNFFEERGNKLYASSSLVP-DDPSLLLANAGMNQFKEYYQGKKVMKEIGA 66

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVR     ND+D +G   RH +FFEMLGNF+FGG  KE+A   A++L+T+ F L 
Sbjct: 67  CSCQKCVRT----NDIDIIGSDGRHASFFEMLGNFAFGGVTKEQACTWAYELITEVFKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ TV+ +D+E   +W+ + G+  D I R+  +DNFW+   TGPCGPCSEI+FD GE
Sbjct: 123 KERLHFTVFTDDDETHDVWRAL-GVPEDHITRLGEDDNFWAAGPTGPCGPCSEIYFDLGE 181

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P      + +R++E WNLVF QF++Q       LP  ++DTGMGLERMA ++Q 
Sbjct: 182 EVGCGCPDCAPGCDCDRFLEFWNLVFTQFDRQEDGSMPELPHRNLDTGMGLERMAAIMQH 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFLIADGILPANE 295
           K++ +D D+ + LI+  E+++G  Y  N       + R+I DH RS  FLI+DG+LP NE
Sbjct: 242 KSSFFDGDVMQSLIKLGEEISGKTYVDNEYTGASRSLRIIADHARSVDFLISDGVLPGNE 301

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + RLLG  +  +   + A+   MG AYP L++   L++  + +E+
Sbjct: 302 GRGYVLRRLLRRAVFHGRLLGIEDAFLGRFIDAVNDVMGDAYPNLVENAGLVKGIVNAEE 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  TL+ G V LD  L  LG+ E L+G  AF L+DT G P+D+  +I  + G   +DI
Sbjct: 362 ERFSTTLNNGRVYLDEQLGALGEGEQLSGKAAFMLHDTFGFPIDLTVEIAESAGH-AVDI 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+  + EQ++RARA + G   G+   +W  L ++  AT+F GY+              
Sbjct: 421 DGFDAEMAEQKARARAAAKGDAWGSFNDVWTELADQLPATEFAGYEEESIEG-------- 472

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V AIV  GE V  A +  +  VV D+TP YAE GGQLGD G   
Sbjct: 473 --------------AHVLAIVVNGERVASAENAAEASVVLDRTPLYAEMGGQLGDHGLID 518

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  +++   K       H     G L    ++    D   R  L+ NH+ATHLL  
Sbjct: 519 TADAQFFVSNTVSKGGLYV--HEGKLIGKLSEGDTVFAGYDLNRRGLLARNHTATHLLDA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS ++P+ LRFD TH + +TS +++++ED VN+ I    PVVTR+M 
Sbjct: 577 ALKEVLGDHVNQAGSLVSPEALRFDFTHFEAMTSEQIRAVEDLVNEQILAAKPVVTRVMG 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A ASGA AL G KY+D VRVVS+  ED    S  LCGGTH ++T E+ L  IVSESS
Sbjct: 637 IEEAKASGAVALFGEKYSDTVRVVSIGAED-EPFSRELCGGTHAANTAELGLFKIVSESS 695

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
             + +RRIEA+T   A ++L  +    +S AS LK     V  R+  +  E R+      
Sbjct: 696 TGSNVRRIEAVTSTGAIAYLEQRAALAESAASQLKCRIEEVPARISSLQAELRESNQKLK 755

Query: 776 KRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K         ++    +   +     +   ++ +++ +L++V D +++K+      ++  
Sbjct: 756 KALTGGGSDAISSAIENAQDMGGYKLVVAELAGLEASDLRNVWDTIRQKVSGACACVLAT 815

Query: 831 SKEKKA--SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             EK     +     +     F+A ++ +  A ++  G GGG+P MAQ+GG +    
Sbjct: 816 VTEKGTPALIAAATDDAASAGFHAGNVIKQIAPLV-DGRGGGKPTMAQAGGKDAQGV 871


>gi|172040632|ref|YP_001800346.1| alanyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|205830039|sp|B1VDL4|SYA_CORU7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|171851936|emb|CAQ04912.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 888

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/920 (34%), Positives = 486/920 (52%), Gaps = 58/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F + F K+GH  +PS+SLI  +DP L+F N+GMVPFK  F GQE P +   
Sbjct: 1   MQTHEIRQRFTDHFVKSGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQETPPFGTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT      
Sbjct: 60  TSIQKCVRTL----DIDEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWTLLTNSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L+  RL++TVY++D+EA +LW  + GL  ++I R+   DN+W M   GPCGPCSEI+
Sbjct: 116 GLGLNPDRLWVTVYEDDDEAAQLWHDLVGLPTERIQRLGMEDNYWHMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGL 230
           +D+G    G   G + +  R+IEIWNLVFM+FE+   +      I+   PK +IDTGMG+
Sbjct: 176 YDRGPAY-GEDGGPAVDDSRFIEIWNLVFMEFERGETKPDGSFDIVGNLPKKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E++TG +Y  +  + +  RVI DH R++  LI D
Sbjct: 235 ERLAFLLQGVDNVYETDLLRPVIDTAEKLTGTRYGTQDKDDIRFRVIADHSRTALMLILD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +  ARLLG    ++  LL  +   M  +YPE+ +    I 
Sbjct: 295 GVTPGNEGRGYILRRLIRRIIRSARLLGAQGAVIEQLLGTVREAMTPSYPEIEENWERIR 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E++ F KTL+ G  L +  L+        ++ G VAF L+DTHG P+D+ +++  
Sbjct: 355 SVGVTEEKAFLKTLESGSQLFEQFLTEARNSGTSVVPGAVAFSLHDTHGFPIDLTREMAE 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              L  +D   F++ + EQ++RA+A S        +   +        T F GY+     
Sbjct: 415 EASLT-VDEAGFHELMAEQKARAKADSAAKKHVHADLSVYRAFIDSHPTHFTGYENTAD- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                    V  ++  G++ + A +GQ  +V+ DQTPFYAE+GG
Sbjct: 473 ----------------------EGKVLGLIVDGQLADRASAGQHAQVILDQTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G   G G   ++ DVQK A+ ++ H   V  G L     L   +D + R Q    
Sbjct: 511 QMADRGSLRGPGGLAKVVDVQKIAKKVWAHLIEVTEGELAIGELLEARVDQKWRHQARQA 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THL+H AL  +LG    Q GS   P  LRFD ++   +T  +L+ IE+  N  +  +
Sbjct: 571 HSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFSYGDQLTEKQLQQIEEIANSAVDTD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T   + E+A A GA AL G  Y  +VRVV +    GG  S  LCGG HV  + +I 
Sbjct: 631 YQVNTIETSLEEAKAMGAMALFGENYGKQVRVVEI----GGPFSMELCGGIHVDHSSQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RRIEA TG  +  HL      + +LA+  K +   +  R++ +  +
Sbjct: 687 PISVLGESSVGSGVRRIEAYTGMDSFRHLAADRSLVANLAANFKATSEEIPERIDALTAK 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            +  +    + + Q     +     S   ++ V  ++  +   + +KEL+SV      + 
Sbjct: 747 LKAAEKQVQQLRAQQLAAQVGSIVDSAADVSGVKVLTQNLGEGLGAKELRSVAQDAIARF 806

Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            S   ++L      +K   +       ++R   A DL +     +GG G GG+P +AQ  
Sbjct: 807 NSETAVVLFTSQDGEKVPFVAAANPQAVERGLKAGDLVKAFGAEVGGRG-GGKPALAQGS 865

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G + +  D  +A V   + +
Sbjct: 866 GSDASGVDAGLAAVQRLVNE 885


>gi|282878226|ref|ZP_06287022.1| alanine--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281299644|gb|EFA92017.1| alanine--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 872

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/921 (35%), Positives = 496/921 (53%), Gaps = 75/921 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F +FF+  GH ++ S+ ++  +DPTLMFTN+GM  +K+I  G ++P  +  
Sbjct: 1   MTANEIRESFKKFFESKGHTIVASAPMVIKDDPTLMFTNAGMNQWKDIILGNKQPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFKE AI  AW+ L     LD
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY+TV++         D EA K W+K   L AD II    +DNFW M +TGPCGPCS
Sbjct: 121 PKDLYVTVFEGSPEENIPHDSEAEKYWRK--HLPADHIINGNKHDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +++  + IEIWN+VFMQF ++       L    IDTGMG
Sbjct: 179 EIHVDSRSDEEKAQLPGRELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+  +LQ K +NYD  +F+  I   E+++G KY       V  RV+ DHLR+ +F IA
Sbjct: 239 FERLVRMLQGKNSNYDTGIFQPFIHEMERLSGKKYGEQEDVDVAMRVVADHLRAVAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   LG  E  +  LLP L  EMG AYPEL+  + L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYAYTFLGQREAFVYKLLPVLVDEMGGAYPELVAQREL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I + ++ E++ F +TL++G+ LL+  +  L K     ++G+ AF+L+DT+G PLD+ + I
Sbjct: 359 IGKVMKEEEDSFLRTLEKGINLLNNAMDELKKAGKTQIDGEQAFRLFDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               G + +D   FN  +++Q+ RAR       +      W  +++  G  QF+GYD   
Sbjct: 419 CREHGFS-VDEQQFNAEMQKQKDRARNA-----AQVENSDWVEIRQ--GEQQFVGYDYTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               + + RKV  +K                                EV+ D TPFY E 
Sbjct: 471 YECHILKYRKVTQKKNSF----------------------------YEVILDFTPFYGEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G  + +   + + D +++           ++     E   +  +D   R   +
Sbjct: 503 GGQVGDQGVLVSEHETVDVIDTKRENNQSIHII---KQLPQHPEADFMACVDTDKRDACA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL +AL  +LG HV Q GS ++PD LRFD +H + +T  E++ +E  VN++I 
Sbjct: 560 ANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERLVNNLIR 619

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           Q++P+   R    E+A   GA AL G KY D+VRVV          S   CGG H  STG
Sbjct: 620 QDIPLDEHRDTPIEEAKEMGAIALFGEKYGDKVRVVRFGP------SCEFCGGIHAKSTG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I L  I+SESS+ AG+RR EAITG++    +   ++ +K++ S    +  ++ G +E+ 
Sbjct: 674 RIGLFKILSESSVAAGVRRFEAITGRKCEEAMYAIEDTVKAIRSLFN-NAKDLKGVIEKY 732

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E+  ++    + + Q               I  V  +  ++  +D    K ++  +++
Sbjct: 733 MDEHDTMRKEIEQFQAQAVQRTKDELIRRAENINGVTVIKAVLP-IDGNAAKDLVFKIRE 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            I S ++ ++G + ++K  + ++++ED++     NA  + R +AK++ GG GGG+PH A 
Sbjct: 792 AIPSHLLCVIGTTAQQKPLLSVMLSEDMVKDHGLNAGQMVREAAKLIQGG-GGGQPHFAS 850

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG N +    A+  V    K
Sbjct: 851 AGGKNVDGIRAAVDKVIELAK 871


>gi|257439376|ref|ZP_05615131.1| alanine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
 gi|257198251|gb|EEU96535.1| alanine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
          Length = 886

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/914 (35%), Positives = 497/914 (54%), Gaps = 55/914 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L FF+  GH  L S  L+P NDP+L+  NSGM P K  F  QE+P    VTT
Sbjct: 6   LNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKC+R      D++ VG T RH TFFEMLGNFSF  YFKE  I  AW+ LT  +   + 
Sbjct: 66  CQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTSDEWMAIP 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+I+VY+ED+EA+ +W K  G++ D ++R+   DNFW    +GPCGPCSEI+FD+G 
Sbjct: 122 KDKLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDRGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWNLVF QF+   K     L + +IDTGMGLER+A V+Q 
Sbjct: 181 EYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D  + ++   E + G  Y     + ++ RVI DH+RS +F+++DGILP+NEGR
Sbjct: 241 VGNLFEVDTVQSVLHHVEHIAGKTYGENAKDDISIRVITDHIRSCTFMVSDGILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG + P ++ L+  +     SAYPEL +    I++ + +E+  
Sbjct: 301 GYVLRRLLRRAARHGRMLGISRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEEAN 360

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+ ++  L      +L G   FKL DT G PLD+ ++I   +G   ID 
Sbjct: 361 FARTIDAGMNILNNMIDGLEKAHQHLLKGLDVFKLNDTFGFPLDLTKEIAAEQG-IEIDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+  +++Q+ RARA  L        +  F        T F GY+ L            
Sbjct: 420 DGFHAEMKKQKERARAERLKKNISGWSEDLFGGL-TVEPTVFTGYETLND---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQLGDT 531
                        + +V A+  +  + +   + ++    V VV D+TPFYAE GGQ+ D 
Sbjct: 469 -------------TGVVVALSDEETLTDAIATDEEAKDGVLVVLDKTPFYAEMGGQVADN 515

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G    L++ DV+K  +G +VH  ++E GI++    L   +D + R  +  NH+ATH
Sbjct: 516 GLLTGPECSLRVLDVKKTPKGYYVHTCVLESGIVKVGDHLNAQVDKEYRMSVCRNHTATH 575

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG HV Q GS    +   FD TH   +T  EL  ++  VND I +++ V  
Sbjct: 576 LLQAALREVLGDHVHQAGSYQDAEITHFDFTHFSAVTPEELARVQKIVNDKIYESMNVTV 635

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M  E+A   GA AL G KY   VRVV++E       S+  CGGTHV +T +I    IV
Sbjct: 636 KEMPIEEAKKLGAMALFGEKYGKVVRVVNIEG-----WSTEFCGGTHVKNTAQIGGFKIV 690

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKL 770
           SESS+ AGIRRIEA+TG+        Q+  L ++A+ LK  +  ++  R E +  E + +
Sbjct: 691 SESSVAAGIRRIEAVTGRNLLVRANLQEAMLHTVANTLKANNITSLPIRAEAVMAENKAM 750

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                + K ++    +     +  +++ V   S   +      L+ + D+++ K  + ++
Sbjct: 751 SKELEEIKAKVAASKVNSLFDNAEEVSGVKIASAYFTGTTGDTLRGMCDSIRDKAVNPVV 810

Query: 826 MLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            ++    E K ++ + V +        A  L +  + + GG G GG+P  A +G  +  K
Sbjct: 811 AVLVGKAEDKVTMAVTVNKLAQEKGLKAGVLVKEISAIAGGKG-GGKPDFAMAGLKDETK 869

Query: 885 ADQAIAGVASFLKK 898
            D+A+A V   ++K
Sbjct: 870 IDEALAAVKGIVEK 883


>gi|239629711|ref|ZP_04672742.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239528397|gb|EEQ67398.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 878

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/917 (34%), Positives = 484/917 (52%), Gaps = 61/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 1   MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K F 
Sbjct: 61  TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K +G+  D I+     DNFW + E GP GP SEIF+D+
Sbjct: 117 FDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 172

Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           G+                E  RY+EIWN+VF +            P  +IDTGMGLER+ 
Sbjct: 173 GQQFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 232

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291
            V+Q     ++ DLF  +I+A+E+++  K       + V+ ++I DH R+ +F I DG L
Sbjct: 233 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDGAL 292

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++ +
Sbjct: 293 PSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQKVI 352

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409
            SE+ RF +TLD G+ LL+ +++ L +D    + G  AFKL+DT+G P+++  +     G
Sbjct: 353 ESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGADAFKLFDTYGFPVEMTNEYAQDEG 412

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  F + +  QR RAR       S  ++     L      ++F G+  L      
Sbjct: 413 L-QVDMAGFKKNMAAQRDRARKARGDRQSMGSQD--KVLMSITTPSKFTGWTELDHKH-- 467

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + ++ IV   ++ +    G   +++FD+TPFYAE GGQ+ 
Sbjct: 468 --------------------ASLQTIVVNDQLQDSVSEG-TAQLIFDETPFYAEMGGQVA 506

Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G        +       + A      H +  +G L T     L++D   R+++S+NH+
Sbjct: 507 DHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTVKGKLETGQQYWLSVDPLRRKKVSLNHT 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I   LP
Sbjct: 567 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIWDALP 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +  + M  E+A   GA A+ G KY   VR+V +     G +++   GGTH +++  + L 
Sbjct: 627 ITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSSALGLF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            I SES I AGIRR+EA+T + A  +L  Q + L   A  LK+ Q  NV  +V ++  + 
Sbjct: 682 KITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQLQADL 741

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +  Q   A  + +L  +  +       ++  +  ++  +      EL+ + D  + K  S
Sbjct: 742 KAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKAKQAS 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L G     KA++L+ V +      F A DL +  A  +GGGG GGRP MAQ+GG N
Sbjct: 802 DILVL-GTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKN 859

Query: 882 GNKADQAIAGVASFLKK 898
                 A++   + + +
Sbjct: 860 PAGIPAALSEAKTVISQ 876


>gi|117928537|ref|YP_873088.1| alanyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
 gi|205829965|sp|A0LUJ2|SYA_ACIC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117649000|gb|ABK53102.1| alanyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
          Length = 886

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/905 (36%), Positives = 484/905 (53%), Gaps = 62/905 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L FF+K  H ++PS+ L+  +DP L+F  +GM PFK  F G     +   
Sbjct: 1   MESAEIARRWLAFFEKRDHVVVPSTPLVA-DDPELLFVVAGMQPFKPYFRGDAPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQK +R      D+D VG+T RH TFF M GNFSFG YFKE AI LAW+LLT      
Sbjct: 60  TSVQKVLRT----PDIDEVGKTTRHATFFHMCGNFSFGDYFKETAIPLAWELLTTPVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +     RL++TVY +D+EA  +W ++ GL  D+I R    DNFWSM   GPCGPCSEI+
Sbjct: 116 GYGFAPDRLWVTVYTDDDEAADIWHRVVGLPVDRIQRRGMADNFWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMG 229
           +D+G     GG P ++EE  RY+E+WNLVFMQ+E+     +   P        +IDTGMG
Sbjct: 176 YDRGPEFGVGGGPVANEE--RYLEVWNLVFMQYERGPGGAKDNYPILGELPAKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIA 287
           LERMA +LQ   N Y+ID  + ++  + ++TG +Y     N V  R++ DH+R+ + L+ 
Sbjct: 234 LERMAAILQGVDNIYEIDTTRPILDKAAELTGQRYGSGGQNDVRLRMVADHIRAITMLVN 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG++P+NE RGYVLRR+MRR +   RLLG  EP M  L+          YPEL +    I
Sbjct: 294 DGVVPSNEERGYVLRRLMRRVVRAMRLLGAREPTMHELVATAIAVFTPQYPELSRNAERI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
                 E+  F  TL  G    +  +   G   +L+G+ AF L+DT+G P+D+  ++   
Sbjct: 354 FAVADGEEASFFSTLAAGTARFEAAVREAG-GGVLSGEQAFVLHDTYGFPIDLTLEMAAE 412

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GATQFIGYDLLRG 465
           +G+  +D   F   + EQR RA+  +    +G  ++  +    +      +F GY    G
Sbjct: 413 QGVT-VDEEGFRALMAEQRRRAKEDAERRKTGAADRAAYRAAAELLGRPVEFTGYTERSG 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   ++V+ ++  G  V  A +GQ+VEVV D+TPFYAE G
Sbjct: 472 -----------------------EAVVRGLLVDGAAVPAAHAGQRVEVVLDRTPFYAEGG 508

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQL D G       R+ + DVQ+   G+ VH   V  G +    +++  ID   R  +S 
Sbjct: 509 GQLPDHGVLEFAAGRIDVDDVQQPLPGLIVHRGRVADGEITVGETVLARIDVDRRWAISR 568

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATH++H A    LG   +Q GS   P   RFD T+   +  + L  +E+ VND++  
Sbjct: 569 SHTATHMVHKAFREFLGDTAAQAGSENAPGRFRFDFTNPSAVPPSVLGEVEERVNDLLLH 628

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +L V  +IM +++AIASGA A+ G KY D+VRV+S+     G  S  LCGGTHV  TG +
Sbjct: 629 DLEVTAQIMRQQEAIASGAIAMFGEKYGDQVRVISI-----GDWSRELCGGTHVPHTGHL 683

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            ++ IVSESSI AG+RRIEA+ G  A  +L  +   +  LA  LK     +  R+  +  
Sbjct: 684 GVIKIVSESSIGAGVRRIEALVGLDAYRYLAREAVLVSQLAEQLKAPADELPDRIAGMLA 743

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII--SEVDSKELKSVMDALQK 818
             R  +    K +    + +      +   +  +  ++  +    VD+  L+ +   L++
Sbjct: 744 RLRDAEKELEKLRQARLLAEAPRLAAARVDVGGLAVVAARVDGDGVDADGLRLLATDLRQ 803

Query: 819 KI-QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           ++  S +++L G++  +   V  V +E L     A +L  ++AK LGGGG GGRP  AQ 
Sbjct: 804 RLGGSAVVVLAGVAGGRPVVVAAVGSEALARGVKAGELVGVAAKRLGGGG-GGRPDFAQG 862

Query: 878 GGPNG 882
           GG N 
Sbjct: 863 GGTNP 867


>gi|90962086|ref|YP_536002.1| alanyl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|122448814|sp|Q1WT32|SYA_LACS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|90821280|gb|ABD99919.1| Alanyl-tRNA synthetase [Lactobacillus salivarius UCC118]
          Length = 880

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/920 (35%), Positives = 505/920 (54%), Gaps = 62/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+FF+  GH+++ S+ LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  +
Sbjct: 61  HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITVY ED++A K W +  G+    I      DNFW + E GP GP SEIF
Sbjct: 117 WFDMDKEKLYITVYPEDKDAKKYW-EEVGVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 172

Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           FD+G+ +        E        RY+EIWN+VF +F  +       LP  +IDTGMGLE
Sbjct: 173 FDRGQEMNNLPEDDPESYPGGENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIAD 288
           R+ +V Q    N++ DLF  +I+ + +++  K  G N    V+ +VI DH R+ +F I D
Sbjct: 233 RVVSVFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAIGD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M SAYPE+++    IE
Sbjct: 293 GALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + ++ E++RF  TL  G+ LLD +++   ++  + L G   FKLYDT+G PL++ ++   
Sbjct: 353 KVIKMEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEYAN 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   FN+ +E+Q++RARA      S   +     L +   +++++GY  L+  
Sbjct: 413 DEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL--LTDITTSSEYVGYHELK-- 467

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 + ++K I+   E+V+   +  + +V+FD+TPFYAE GG
Sbjct: 468 ---------------------ANGVLKDIIIDNELVDTVPADSRAQVIFDKTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        +    +  + A      H I     +  E +  L +D     ++  
Sbjct: 507 QVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKEMTRENTYSLEVDVAFHNKVKK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LGSH  Q GS + P  LRFD T+   +T+ +LK IED VN  I +
Sbjct: 567 NHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIEDIVNAKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V T + ++E A   GA AL G KY D VRVV V     G +S   CGGTHV++T EI
Sbjct: 627 NIQVETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCGGTHVANTNEI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIW 764
            L  IVSES + AG+RRIEA+T + A   L  +++ L+  A  LK V    V  ++E++ 
Sbjct: 682 GLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIKEVPRKIEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           E+ + L+      + +   +       +   I     ++  ++     +L+ + D  ++K
Sbjct: 742 EQVKLLEQQKQALEDKFASQQAGDIFKNIKDINGKTLIAGQVNVSGMSQLRQLADQWKEK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   + + K +++  ++ D +   + A DL +  A  +GGGG GGRP +AQ+G
Sbjct: 802 QLSDVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKVGGGG-GGRPDLAQAG 860

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G       +A+     +L K
Sbjct: 861 GKKPEGIQEALKAAEDWLNK 880


>gi|257066429|ref|YP_003152685.1| alanyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
 gi|256798309|gb|ACV28964.1| alanyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
          Length = 870

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/911 (35%), Positives = 511/911 (56%), Gaps = 56/911 (6%)

Query: 1   MSNV--SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M N+  + +R+ +L FF  + GH LL S  LIP +D +L+  N+GM P K  FTG++K  
Sbjct: 1   MKNLGMNELRSKYLNFFGNEKGHTLLKSFPLIPIDDDSLLLINAGMAPLKKYFTGEKKMK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T+ QKCVR      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  A++ LTKE
Sbjct: 61  NNRATSSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAITWAYEFLTKE 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
            ++ +  +++TV+ EDEEA+ +W    GL +++I+R    DNFW + E GPCGPCSEIF 
Sbjct: 117 LEISKDDIWVTVFKEDEEAYNIWHDEIGLDSERILREGKEDNFWEL-EVGPCGPCSEIFV 175

Query: 178 DQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           D+G         +   +++ +R++E+WNLVF QF + ++     L   +IDTGMGLER+A
Sbjct: 176 DRGAGRAIDENDNRPGNDDSDRFMEVWNLVFTQFNKDSQGNYTPLAHPNIDTGMGLERIA 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            VLQ+K N +++D+   +I   E+++  KY+    + V+ RVI DH ++ +FL  DG+LP
Sbjct: 236 MVLQDKDNIFEVDVMAAIISEIEKLSNKKYKESKKDDVSIRVIADHAKAMTFLTCDGVLP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRR++RRA  + +LLG     + +++  +       Y EL   +  I+  +R
Sbjct: 296 SNEKRGYVLRRLIRRAYRHGKLLGIEGEFLTNIVDKVIDTYKVEYDELDANREKIKSVIR 355

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E+ERF KT+D+GL  L+ ++S +   K+++L+G  AFKLYDT+G PLD+ ++IL  + L
Sbjct: 356 DEEERFQKTIDQGLERLESLISKMEKIKNKVLDGKEAFKLYDTYGFPLDLTKEILEEKNL 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D  +FN  ++ Q+  AR         + + I     +    T F+GYD L       
Sbjct: 416 -DVDEKTFNDEMQIQKQTAREARKKDAGWSLDNINT---DGIAKTSFVGYDNLD------ 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                            + + +  + ++   V     G    V+ D+T FYAE GG++ D
Sbjct: 466 -----------------IKARILNLFKENSEVSSLSEGDNGIVISDKTSFYAEGGGEVAD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG  + D  + ++ DVQK+ +  F +   V  G +         +D   R  +  NHSAT
Sbjct: 509 TGLILSDSFKARVIDVQKQKDIYFHYI-EVVEGAVFVGDDAQFKVDRNKRLAIQRNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG  V Q GS +  + LRFD +H++ +T  E+  +E+ VN  I +   V 
Sbjct: 568 HLLDQALRDVLGEDVKQAGSLVDENKLRFDFSHNRALTKEEIDKVEEIVNREIVKQELVT 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             I++ +++   GA  L   KY D+VRVVS+     G +S  LCGG HV++T +I++  I
Sbjct: 628 KEIVDYKESQKMGAIGLFEDKYKDKVRVVSM-----GDYSIELCGGCHVNNTSDILMFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
             ESS+ AG+RRIEA+TG++A  +L  +  KL  +A  L  +  N+  R++ + +E  KL
Sbjct: 683 KQESSVSAGVRRIEALTGKKAFEYLNDRANKLDQVAERLNTNTNNITNRIDSLEKEIEKL 742

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +  +++ K   + + +S       +I  +N +          EL+   + ++  I + II
Sbjct: 743 KSENSRLKSTNSSDIVSELKEDVKEIKGINLLVKKFENASMDELRDYENRIKSSIDNLII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   +S   K    + V + L D++NA  + R  A++ GG G GG+ + AQ+GG + +K 
Sbjct: 803 VFASVS--DKIVFTVSVDDKLTDKYNAGKIVRQIAQITGGNG-GGKKNFAQAGGKDISKL 859

Query: 886 DQAIAGVASFL 896
            +A+  V+  +
Sbjct: 860 KEALEKVSEII 870


>gi|324999314|ref|ZP_08120426.1| alanyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 886

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/922 (36%), Positives = 487/922 (52%), Gaps = 63/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   F   F++NGH  +PS+SLI   DP L+F N+GMV FK  F G     Y   
Sbjct: 1   MQTHEIVRRFTAHFERNGHTPVPSASLI-LEDPQLLFVNAGMVQFKPYFLGDVPAPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+M GNFSFG YFK  AI+ AW L+T      
Sbjct: 60  TSIQKCVRT----PDIDEVGKTTRHTTFFQMAGNFSFGDYFKRGAIEFAWSLITNSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  R+++TVY++D+EA  LWK I+GL   +I R   +DN+W M   GP GPCSEI+
Sbjct: 116 GYGFDPERIWVTVYNDDDEAIALWKDIAGLPEQRIQRRGGDDNYWDMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFMQ E+      +       LP  +IDTGMG+
Sbjct: 176 YDRGPEF-GAEGGPEADEDRYLEIWNLVFMQDERGELSPKKGHPPIGTLPHKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQE  N Y+ DL + +I  +E+++G +Y     + V  RVI DH RSS  +I D
Sbjct: 235 ERVAFLLQEVNNVYETDLVRPVIAKAEELSGRRYGRNEEDDVRFRVIADHARSSMMIIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RR +  ARLLG T P +      +   M   YPEL      I 
Sbjct: 295 GVTPGNEGRGYVLRRLLRRIVRSARLLGVTGPCLGEFAAVVRDTMSPTYPELATDFERIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +R+E++ F  TL  G  + +G ++         L GD AF+L+DT+G P+D+  ++  
Sbjct: 355 AVIRAEEDTFRATLTAGEKIFEGAVAEARSTGRTTLPGDQAFQLHDTYGFPIDLTLEMAD 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
             GL  +D   F   ++EQRSRA+A + G   G  +  ++ ++ + +GAT F+GY  L  
Sbjct: 415 EAGL-AVDRERFTALMDEQRSRAKADAAGRKVGFVDASVYRAVLDTHGATDFLGYQSLNS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  +++ G+ V  A  G +VEV+ D+TPFYAEAG
Sbjct: 474 -----------------------ESRIVGLLRDGQTVPAAEQGDQVEVLLDRTPFYAEAG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  DTG   G    +++ DVQ    G+ VH  +V  G +  +  +V  +D   R  +S 
Sbjct: 511 GQQADTGVLRGGSFEIRVDDVQSPVAGLRVHRGVVTAGTVTLDAEIVAEVDPARRSAISR 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIA 644
            H+ATHL+H  +   LGS  +Q GS   P  LRFD T     +  A L  IE+ VN ++ 
Sbjct: 571 AHTATHLVHAGVRGALGSSAAQAGSLNAPGRLRFDFTSPTGAVDPAALVEIEEEVNSVLQ 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           Q+  + T   + + A   GA  L G KY DRVRVV +     G +S  LCGGTHV  TGE
Sbjct: 631 QDREIQTYETSMDSARKLGAMMLFGEKYGDRVRVVDM-----GDYSRELCGGTHVRRTGE 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++SE+SI +G+RR+EA+ G  A  H   +   +  LA  LK     +  R++ + 
Sbjct: 686 LGLVRVLSEASIGSGVRRVEALVGLDAFQHATTEHLLVNQLAEQLKARPEELPDRIQGLV 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
           E  R  +    K +    +        +   +     ++      V   +L+++   ++ 
Sbjct: 746 ERLRTAERDLEKHRADAVLASAGSLADAAEDLDGTALVAVTAPDGVAGNDLRTLAADVRG 805

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA 875
           K+    G++ L  ++ + K S ++  T+   D    A  L    A  +GG G GG+P +A
Sbjct: 806 KLGDRPGVVALFAVA-DGKVSFVVATTKAARDNGVAAGKLIPEFAAAVGGRG-GGKPDLA 863

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
           Q GG +    D AI  + S L+
Sbjct: 864 QGGGTDPAGIDAAIQKLRSALR 885


>gi|226306472|ref|YP_002766432.1| alanyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|226185589|dbj|BAH33693.1| alanyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 890

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/921 (35%), Positives = 482/921 (52%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMVPF   F GQ+ P Y   
Sbjct: 1   MQTHEIRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVPFVPFFLGQQTPSYSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG T RH+TFF+M GNFSFG YFK+ AI  AW LLT      
Sbjct: 60  TSVQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGDYFKKEAISHAWQLLTGSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + +D  RL+ TVY +D+EAF +W+   G+  ++I R    DN+WSM   GPCGPCSEIF
Sbjct: 116 GYGIDPTRLWATVYLDDDEAFSIWRDEVGVPEERIQRRGMKDNYWSMGIPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERF---ILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+    NK +      LPK +IDTGMG+
Sbjct: 176 YDRGAEY-GVEGGPEADEDRYIEIWNLVFMQNERGEGTNKGDYPILGPLPKKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  + ++TG  Y  +  + V  RVI DH R+++ LIAD
Sbjct: 235 ERVAFLLQGVENVYETDLLRPVIDKAAELTGSVYGTDHTSDVRFRVIADHARTAAMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N GRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YP L      IE
Sbjct: 295 GVNPGNYGRGYVLRRLLRRIVRSAKLLGSEQPTMREFMIVVRDTMAPSYPVLETDFTRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F KTL  G  L +            ++ GD AF L+DT+G P+D+  ++  
Sbjct: 355 NVAVGEETAFLKTLASGSALFENAAETVKSSGKSVIAGDQAFALHDTYGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + EQR RA+  +        +   +      GAT+F G+D L   
Sbjct: 415 EAGLT-VDEDGFRTLMAEQRKRAKDDAQARKHAHADLTVYKELLDRGATEFTGFDELVS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++  G  V  A +GQ VEV+ D++P YAE+GG
Sbjct: 473 ----------------------EAHVLALIVDGVRVPVAKAGQDVEVILDRSPLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G     G+  ++ DVQK A+ ++ H   V++G +     ++  +D + R+  +  
Sbjct: 511 QIADIGSLTAPGLEAKVNDVQKIAKKVWTHKVTVQKGEITEGDVVLAHVDAEWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD +    ++ ++ + IE   N+ +A N
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALSDSQKQDIEALTNEAVASN 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T + + + A A GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I 
Sbjct: 631 YAVNTFVTDLDKAKAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ E S+ +GIRR+EA  G  +  +L  +   L  L+S LKV    V  RVE + E 
Sbjct: 687 QVTLLGEQSVGSGIRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVER 746

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSH-IISEVDSKELKSVMDALQKKI 820
            +  +    + K +  +           +I  V  ++    + V   +L+S++  ++ ++
Sbjct: 747 LKVAEKELEQTKAKAVLAAAGEYVAKAKRIGSVLVIAEPAPAGVGGNDLRSLVTDIKGRL 806

Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            S   ++ L+G   + K   ++  ++        A +L       +GG G GG+P MAQ 
Sbjct: 807 GSEPAVVALLG-DVDGKVPFVVASSKAAQGLGVKAGELVASFGPKIGGRG-GGKPDMAQG 864

Query: 878 GGPNGNKADQAIAGVASFLKK 898
            G +      A+  +   + +
Sbjct: 865 SGSDSAGIPAALDAIRDRVGE 885


>gi|227549179|ref|ZP_03979228.1| alanyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078739|gb|EEI16702.1| alanyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 888

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/923 (34%), Positives = 484/923 (52%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
                IR  F + F   GHE +PS+SLI  +DPTL+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRERFTQHFINAGHEPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQTPPFASG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT    
Sbjct: 60  TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKHAWALLTNPVS 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              + LD +RL++TVY +D+EA  +W+   G+ A++I R+   DNFWSM   GPCGPCSE
Sbjct: 116 EGGYGLDPQRLWVTVYLDDDEAAGIWENTIGVPAERIQRMGMEDNFWSMGVPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMG 229
           I++D+G    G   G   +  RY+EIWNLVFM+  +    ++       LPK +IDTGMG
Sbjct: 176 IYYDRGPE-HGKEGGPIADDTRYLEIWNLVFMESIRGEGDKKGFEIIGELPKKNIDTGMG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL + +I A+ ++TG +Y      + V  RVI DH R++  +I
Sbjct: 235 VERVACILQGVDNVYETDLLRPVIDAAIELTGARYNAGNTRDDVRFRVIADHSRTAMMII 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P+NEGRGY+LRR++RR +  ARLLG T P++   +  +   M  ++PE+   +  
Sbjct: 295 LDGVTPSNEGRGYILRRLLRRIVRSARLLGATAPVLEPFMNTIMDTMTPSFPEIADNRER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F KTL+ G    +   + +       L G  AF+L+DT+G P+D+  ++
Sbjct: 355 IVRVAVAEERAFMKTLESGTHRFEEAAASVKAAGAGTLPGAQAFELHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D+  FN+ +  QR RA+A +     G  ++  +        T+F+G+  L 
Sbjct: 415 ARESGLE-VDMDEFNREMALQRERAKADNKAKKQGNLDESLYREWVDSHPTEFVGFSELA 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                      V  +V+ GE V E   G +VEV+ D TP YAE+
Sbjct: 474 HD-----------------------GTVIGLVRDGEKVTEVSQGDEVEVILDVTPMYAES 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G  +     L +TDVQK  + +++H A V+ G L     +   +D   R    
Sbjct: 511 GGQMGDRGRIVVGDTVLNVTDVQKVGKKLWIHKATVQNGGLDLGQGVTTEVDSSWRHGAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATHL+H AL  +LG    Q GS   P  LRFD  +++ ++  +L+ I    N  + 
Sbjct: 571 QAHTATHLIHAALRQVLGPTAVQAGSLNKPGYLRFDFNYTEQLSDEQLREIATITNQAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +
Sbjct: 631 ADFAVNTIETSLEEAKAMGAMALFGENYGDVVRVVEI----GGPFSIELCGGTHVDHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + ++ ESS+ +G RRIEA +G  +  +   +      LA+ LK     +  R+ ++ 
Sbjct: 687 IGPVAVLGESSVGSGARRIEAYSGLESFRYFSREAALASGLAAELKTPTEQLPDRIAQLT 746

Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
           +  R  +   A  + Q              ++A  + +S  +   + + +L+++   +++
Sbjct: 747 DRLRAAEKELAAMRRQQLSSHTAQYVEQAQQVAKFSLVSVKLPDGLGAGDLRTMASDVRE 806

Query: 819 KIQ--SGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++    G+++L     + K    + VT+  +     A DL +L    + G G GG+P +A
Sbjct: 807 RLGARPGVVVLASSV-DGKVPFAVAVTKPAVEAGVKAGDLVKLIGGYVDGKG-GGKPDLA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q  G N        + V   L +
Sbjct: 865 QGSGSNPEGLSAGFSAVRDHLAQ 887


>gi|229493550|ref|ZP_04387335.1| alanyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229319511|gb|EEN85347.1| alanyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 890

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/921 (35%), Positives = 482/921 (52%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMVPF   F GQ+ P Y   
Sbjct: 1   MQTHEIRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVPFVPFFLGQQTPSYSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG T RH+TFF+M GNFSFG YFK+ AI  AW LLT      
Sbjct: 60  TSVQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGDYFKKEAISHAWQLLTGSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + +D  RL+ TVY +D+EAF +W+   G+  ++I R    DN+WSM   GPCGPCSEIF
Sbjct: 116 GYGIDPTRLWATVYLDDDEAFSIWRDEVGVPEERIQRRGMKDNYWSMGIPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERF---ILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+    NK +      LPK +IDTGMG+
Sbjct: 176 YDRGAEY-GVEGGPEADEDRYIEIWNLVFMQNERGEGTNKGDYPILGPLPKKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  + ++TG  Y  +  + V  RVI DH R+++ LIAD
Sbjct: 235 ERVAFLLQGVENVYETDLLRPVIDKAAELTGSVYGTDHTSDVRFRVIADHARTAAMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N GRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YP L      IE
Sbjct: 295 GVNPGNYGRGYVLRRLLRRIVRSAKLLGSEQPTMREFMIVVRDTMAPSYPVLETDFTRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F KTL  G  L +            ++ GD AF L+DT+G P+D+  ++  
Sbjct: 355 NVAVGEETAFLKTLASGSALFENAAETVKSSGKSVIAGDQAFALHDTYGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + EQR RA+  +        +   +      GAT+F G+D L   
Sbjct: 415 EAGLT-VDEDGFRTLMAEQRKRAKDDAQARKHAHADLTVYKELLDRGATEFTGFDELVS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++  G  V  A +GQ VEV+ D++P YAE+GG
Sbjct: 473 ----------------------EAHVLALIVDGVRVPVATAGQDVEVILDRSPLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G     G+  ++ DVQK A+ ++ H   V++G +     ++  +D + R+  +  
Sbjct: 511 QIADIGSLTAPGLEAKVNDVQKIAKKVWTHKVTVQKGEITEGDVVLAHVDAEWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD +    ++ ++ + IE   N+ +A N
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALSDSQKQDIEALTNEAVASN 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T + + + A A GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I 
Sbjct: 631 YAVNTFVTDLDKAKAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ E S+ +GIRR+EA  G  +  +L  +   L  L+S LKV    V  RVE + E 
Sbjct: 687 QVTLLGEQSVGSGIRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVER 746

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSH-IISEVDSKELKSVMDALQKKI 820
            +  +    + K +  +           +I  V  ++    + V   +L+S++  ++ ++
Sbjct: 747 LKVAEKELEQTKAKAVLASAGEYVAKAKRIGSVLVIAEPAPAGVGGNDLRSLVTDIKGRL 806

Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            S   ++ L+G   + K   ++  ++        A +L       +GG G GG+P MAQ 
Sbjct: 807 GSEPAVVALLG-DVDGKVPFVVASSKAAQGLGVKAGELVASFGPKIGGRG-GGKPDMAQG 864

Query: 878 GGPNGNKADQAIAGVASFLKK 898
            G +      A+  +   + +
Sbjct: 865 SGSDSAGIPAALDAIRDRVGE 885


>gi|116071953|ref|ZP_01469221.1| alanyl-tRNA synthetase [Synechococcus sp. BL107]
 gi|116065576|gb|EAU71334.1| alanyl-tRNA synthetase [Synechococcus sp. BL107]
          Length = 887

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/908 (35%), Positives = 500/908 (55%), Gaps = 53/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL F+Q+ GH+++ S+SLIP  DPT++ T +GM+PFK +F GQ++      T
Sbjct: 16  TGAEIRAAFLCFYQERGHKVMASASLIPE-DPTVLLTIAGMLPFKPVFLGQQQRPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ F +D 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVFGIDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ+  N
Sbjct: 191 L-GDEGIDLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+    G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G   P ++ +  A    +  A+P +++ + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLIGINRPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL    K   ++G  AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 370 ETLERGEKLLSEVLDSKPKQ--ISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E+QR RA+A ++ +     + I   +     AT F GY +L                
Sbjct: 427 EAMEQQRQRAKAAAVSIDLTLQDAID-QVVATQNATAFQGYQVLEQP------------- 472

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+A+V  GE    A +G  V++V + TPFY E GGQ+GD G   G  +
Sbjct: 473 ----------SCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 522

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +   +   ++  +FVH   +ERG L    ++   +D   RR+   NH+ATHLL  AL  
Sbjct: 523 -IVAIESVSRSRDVFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 581

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD    + +T+ +L+ IE  +N  IA+   ++   M  + A
Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLEQIETLINGWIAEAHGLLVEEMAIDQA 641

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV ES + AG
Sbjct: 642 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVGESGVAAG 696

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G     +L  ++  +K L    K   G +V RV  + +E +         + 
Sbjct: 697 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 756

Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI---- 830
           +L V            I     +   +  VD   L+    +L  ++  G  +++G     
Sbjct: 757 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGAGLQGAAQSLAAQLGDGAAVVLGGLPDP 816

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S + K  ++    +D++  +  A       AK+ GGGG GGRP++AQ+GG +G     A+
Sbjct: 817 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGG-GGRPNLAQAGGRDGAALAGAL 875

Query: 890 AGVASFLK 897
               + L+
Sbjct: 876 ETARTELE 883


>gi|116670825|ref|YP_831758.1| alanyl-tRNA synthetase [Arthrobacter sp. FB24]
 gi|205829979|sp|A0JX88|SYA_ARTS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116610934|gb|ABK03658.1| alanyl-tRNA synthetase [Arthrobacter sp. FB24]
          Length = 892

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/924 (34%), Positives = 486/924 (52%), Gaps = 64/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +++FF   GH  +PS+SL+  +DP+L+FT +GMVPF    T +E+  Y   
Sbjct: 1   MKSQEITKRWIDFFVSKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEAPYNRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAWELLTTSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L   +L++TVY+ED+EA +LW K +G+ A++I R+   DN+WS  + GP GPCSEI+
Sbjct: 116 GYGLPPEKLWVTVYEEDDEAEQLWLKNTGMPAERIQRMGKADNYWSTGQPGPAGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230
           +D+G    G   G   +  RY+EIWNLVFMQ++  N + +         PK +IDTG+G+
Sbjct: 176 YDRGPSY-GVEGGPIADENRYVEIWNLVFMQYQIDNVRSKVDFDITGELPKKNIDTGLGM 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281
           ER+A +LQ+  N Y+ D  + +I  +  ++G +Y            + V  RV+ DH+RS
Sbjct: 235 ERLAMILQDVENMYETDQVRPVIDKAAALSGKEYTSAESADDPHHTDDVRMRVVADHIRS 294

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LIADG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP + 
Sbjct: 295 ALMLIADGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEKACLPDLLPASRDAMKGVYPVVE 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDI 400
                I     +E++ F +T+  G   L+  +       + L+G  AF L+DT+G P+D+
Sbjct: 355 TDFDRISRIAYAEEKAFLRTIASGTARLEDAVKDSKAAGQPLSGADAFALHDTYGFPIDL 414

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D   F + + EQR RA+A + G      +   F      G T F GY
Sbjct: 415 TLEMAEEAGLK-VDEPEFRKLMLEQRQRAQADAKGKKGSHADLSAFQELLAEGETVFTGY 473

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
             L G                        S V+ I+  G  V +A +G+++E+V  +TPF
Sbjct: 474 TELAG-----------------------ESKVRGILSGGRKVSQASTGEEIELVLAETPF 510

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAEAGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G +  +  +   +D + R
Sbjct: 511 YAEAGGQAADTGLITGDGFVVEVLDVQRPVKGLSVHKAIVREGEIGADSLVQAAVDRERR 570

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                 H+ TH++H AL  ILG    Q GS      LRFD    + +++A    IE+  N
Sbjct: 571 HSAEQAHTGTHIVHAALHQILGPEALQRGSYNKAGYLRFDFAWGEGLSAATRSEIEEVSN 630

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  N  V T++M   +A A GA AL G  Y + VRVV +     G  S  LCGGTHV+
Sbjct: 631 LAIRNNFQVETKVMALAEAKALGAMALFGENYGNEVRVVEI----DGAWSRELCGGTHVA 686

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  I  L ++ + S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R+
Sbjct: 687 NTSLIGSLSLLGDQSVGSGNRRVEAFVGMEAFRHLAAERALVTELTEMLKVPSGLLADRI 746

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD-SKELKSVMD 814
                + + ++    + + +      +         A V  ++H   +V  + +L+ +  
Sbjct: 747 ATTLTKLKTVEKELERLRKEQLTAAAAQLVGTAKDAAGVKVIAHDAGQVSGADDLRGLAL 806

Query: 815 ALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            L+ ++ S    + + G+S ++   ++            A  L RL+A +LGGGG GG+ 
Sbjct: 807 DLRTRLGSEAAAVAVAGVSNDRPVILVATNEAARAAGVKAGALVRLAAGILGGGG-GGKD 865

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
            +AQ GG +  K   A+  V   +
Sbjct: 866 DVAQGGGTDAAKVPAALTAVVDAI 889


>gi|191637661|ref|YP_001986827.1| alanyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|301065839|ref|YP_003787862.1| alanyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|190711963|emb|CAQ65969.1| Alanyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|300438246|gb|ADK18012.1| Alanyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|327381717|gb|AEA53193.1| Alanyl-tRNA synthetase [Lactobacillus casei LC2W]
 gi|327384883|gb|AEA56357.1| Alanyl-tRNA synthetase [Lactobacillus casei BD-II]
          Length = 881

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/917 (34%), Positives = 484/917 (52%), Gaps = 61/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K F 
Sbjct: 64  TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K +G+  D I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 FDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           G+                E  RY+EIWN+VF +            P  +IDTGMGLER+ 
Sbjct: 176 GQQFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291
            V+Q     ++ DLF  +I+A+E+++  K       + V+ ++I DH R+ +F I DG L
Sbjct: 236 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDGAL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++ +
Sbjct: 296 PSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQKVI 355

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409
            SE+ RF +TLD G+ LL+ +++ L +D    + G  AFKL+DT+G P+++  +     G
Sbjct: 356 ESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGADAFKLFDTYGFPVEMTNEYAQDEG 415

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  F + +  QR RAR       S  ++     L      ++F G+  L      
Sbjct: 416 L-QVDMAGFKKNMAAQRDRARKARGDRQSMGSQD--KVLMSITTPSKFTGWTELDHKH-- 470

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + ++ IV   ++ +    G   +++FD+TPFYAE GGQ+ 
Sbjct: 471 --------------------ASLQTIVVNDQLQDSVSEG-TAQLIFDETPFYAEMGGQVA 509

Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G        +       + A      H +  +G L T     L++D   R+++S+NH+
Sbjct: 510 DHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTVKGKLETGQQYWLSVDPLRRKKVSLNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I   LP
Sbjct: 570 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIWDALP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +  + M  E+A   GA A+ G KY   VR+V +     G +++   GGTH +++  + L 
Sbjct: 630 ITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSSALGLF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            I SES I AGIRR+EA+T + A  +L  Q + L   A  LK+ Q  NV  +V ++  + 
Sbjct: 685 KITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQLQADL 744

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +  Q   A  + +L  +  +       ++  +  ++  +      EL+ + D  + K  S
Sbjct: 745 KAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKAKQAS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L G     KA++L+ V +      F A DL +  A  +GGGG GGRP MAQ+GG N
Sbjct: 805 DILVL-GTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKN 862

Query: 882 GNKADQAIAGVASFLKK 898
                 A++   + + +
Sbjct: 863 PAGIPAALSEAKTVISQ 879


>gi|324013703|gb|EGB82922.1| alanyl-tRNA synthetase [Escherichia coli MS 60-1]
          Length = 784

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    E+
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSER 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDATALPAALASVKGWV 779


>gi|295396919|ref|ZP_06807043.1| alanine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294974853|gb|EFG50556.1| alanine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 880

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/920 (36%), Positives = 501/920 (54%), Gaps = 62/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F+Q  GH + PS+SL+P  DP+L++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAEIRQKWLDFWQSKGHSVEPSASLVPVQDPSLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG T RHHT FEMLGNFS G YFK   I  AW+ LT  K
Sbjct: 61  PRITNSQKSIRT----NDIENVGVTARHHTLFEMLGNFSIGDYFKAEVIPWAWEFLTDEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+T Y ED E  +LW+K +GLS +  + +   DNFW +   GPCGP +EIF
Sbjct: 117 WLGLDPEKLYMTYYPEDTETVELWRKATGLSDNHYVPV--EDNFWDLG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G                 E ERY+EIWN+VF QF      E   L   +IDTGMGLE
Sbjct: 174 YDRGVKYQDLEDSDPEMYPGGENERYLEIWNIVFSQFNHMPNGEYVPLKHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +V+Q+   N++ DLF  +I+  E + T +KY  +    V+++VI DH+R+ +F I+D
Sbjct: 234 RMTSVIQDAPTNFETDLFLPIIKEIETLGTAVKYGDKPETDVSYKVIADHVRAVTFAISD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
             LP+NEGRGY+LRR++RRA+ +AR LG  +  +  L+P +   M   YPE+   +  I+
Sbjct: 294 RALPSNEGRGYILRRLIRRAIMHARRLGIKDNFLTKLVPVVADIMADFYPEVKADQNFIQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RF +T++ G  ++  V+S      +++++G  AFKLYDT+G PL++ Q+ L 
Sbjct: 354 DVIKTEEDRFNETINEGEAIIQEVISTLEAEHNKVMSGAQAFKLYDTYGFPLELTQEYLE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G   +D+  F +A++ QR RARA          +     L E    + ++GYD L   
Sbjct: 414 EVG-IDVDLSGFEEAMKAQRERARAARKDSTGMAVQSEV--LSEIDVTSSYVGYDQL--- 467

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                V + +  IV    +V  A +G +V +V +QTPFYAE GG
Sbjct: 468 --------------------VVETRINTIVLGDALVSAAEAGDEVYLVAEQTPFYAEMGG 507

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ DTG  + +  + +       +A      H +     +  + ++ L +D +    +  
Sbjct: 508 QIADTGDVLDEDGQLIGHVVNVVRAPNGQHLHEVKLAAAIVLDQTVQLVVDRRRHHSIEK 567

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS +T D LRFD +H   +T  EL  +E  VN+ IA+
Sbjct: 568 NHTATHLLHQALKDVLGDHANQAGSLVTADHLRFDFSHFGQVTDEELAEMEAKVNEAIAE 627

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             PVVT + + ++A A+GA AL G KY   VR+V +        S  LCGGTHV +T EI
Sbjct: 628 AFPVVTTVTSIDEARAAGAQALFGEKYGSEVRMVDI-----NHWSIELCGGTHVGNTAEI 682

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  I SES I AG+RRIEA+T   A      Q+  LK +A+ LK  +  N+V R+++  
Sbjct: 683 GLFKITSESGIGAGVRRIEAVTSLAAIQEYKIQENILKQIAANLKAGKFLNIVSRLQQFR 742

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE+++        + ++N +           +     ++  +      +L+ + D  ++K
Sbjct: 743 EEHKETLQQLNALRDKMNAQAAGQIFDHVETVGAYTVIAEHVPNRSMDDLRKIADEWKQK 802

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S I++L   S + KA++LI V +D +     A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 803 GSSDILVLA-TSVDDKANLLIAVGQDAVKAGVKAGDLIKQVAPKIGGGG-GGRPDMAQAG 860

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G      ++A+A     + K
Sbjct: 861 GKKPAGIEEALAFAKEIIGK 880


>gi|255534656|ref|YP_003095027.1| alanyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255340852|gb|ACU06965.1| Alanyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 893

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/939 (34%), Positives = 485/939 (51%), Gaps = 97/939 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL++FQ  GH ++PS+ ++  +DPTLMF+NSGM  FK+ F G + P    +
Sbjct: 1   MTSQQIRQQFLDYFQSKGHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKDPKAPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD+VGR   HHT FEMLGN+SFG YFKE AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGDYFKEEAIGFAWELLTEVYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++         D++A+  WKK   +   +II     DNFW M E+GPCGPCS
Sbjct: 121 KEDLYVTVFEGDSVEDLARDQDAYNFWKK--HIDEGRIINGNKKDNFWEMGESGPCGPCS 178

Query: 174 EIFFDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D       G    L   + +  + +EIWNLVFM+F ++       LP   +DTGMG
Sbjct: 179 EIHVDLRTAEEKGMVSALDLVNNDHPQVVEIWNLVFMEFNRKADGSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFL 285
            ER+   LQ KT+NYD D+F  LIQ  E+++G++Y         +  RV+VDH+R+ +F 
Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIQKVEEISGLRYTGILTDEKDIAIRVVVDHIRAVAFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ YA   LG  E  +  L+  L TEMGS + EL + +
Sbjct: 299 IADGQLPSNGGAGYVIRRILRRAISYAYRFLGMKEAFLFELVGVLQTEMGSYFAELSRQQ 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQ 402
            L+ E ++ E+  F KT++ GL  +D V++      ++ L G   F+LYDT+G P D + 
Sbjct: 359 KLVTEVIKEEEISFLKTIELGLKRIDLVINDTISKNEKTLPGAAVFELYDTYGFPAD-LS 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            I+       ID   FN+ + +Q+ R++         + +K++  +  +    QF+GYD 
Sbjct: 418 RIIAEEQQLTIDEAGFNEEMAKQKQRSKKS-------SAQKVYDWVILEEKEQQFVGYDD 470

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                ++   RKV                            E   G+  ++V  ++PFY 
Sbjct: 471 TETETYITRYRKV----------------------------ENKDGEYYQIVLSKSPFYP 502

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGI-----------------------FVHHAI 559
           E GGQ+GD G  +    +       +K                            +  ++
Sbjct: 503 EGGGQVGDHGILVPSYAKNFNIVSPQKFLDQLASENNSDRPSEVIEVLDTRKENNLIISL 562

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           ++             ++   RR    NHS THLLH AL  +LG+HV Q GS + P+ LRF
Sbjct: 563 IKEMPKDAGAVFYAKVNRDERRNTQANHSVTHLLHEALREVLGTHVEQKGSFVGPEYLRF 622

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRV 678
           D +H   +T  ELK +E+ VN  I +N+ +   R +   +A+  GA AL G KY D VR+
Sbjct: 623 DFSHFAKLTDEELKLVEEKVNTKIKENISLEEFRNIPISEAMEKGAMALFGEKYGDNVRM 682

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +          S  LCGGTHV +T EI    I SESS  AGIRRIEAI G +A ++    
Sbjct: 683 IQFG------TSRELCGGTHVRNTAEIGFFKIQSESSTAAGIRRIEAIAGDQATAYFNNL 736

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD 793
           + + K +++ LK    ++   VE++ EE   L+      K +    +         + A 
Sbjct: 737 ESQFKEISALLKTK--DISKTVEKLLEENAALKSEIEAFKKEKAKAETGNWKNDFTESAG 794

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
              +   +S +DS  +K ++  L+K++   +I+++    + K  + + V+ DL  +++A 
Sbjct: 795 KKLLVKKVS-LDSASVKDIVFQLKKEVAGSVIIIIS-DADGKPMITVGVSADLETQYHAG 852

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           ++ +  AK + GGG GG P  A +GG N    D+A    
Sbjct: 853 NIVKELAKEIQGGG-GGNPGFATAGGKNLAGIDEAYNKA 890


>gi|163754032|ref|ZP_02161155.1| hypothetical protein KAOT1_20457 [Kordia algicida OT-1]
 gi|161326246|gb|EDP97572.1| hypothetical protein KAOT1_20457 [Kordia algicida OT-1]
          Length = 870

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/919 (35%), Positives = 484/919 (52%), Gaps = 72/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FLEFF+   H+++PS+ ++  NDPTLMF NSGM PFK  F G   P    +
Sbjct: 1   MKSQDIRAKFLEFFKSKTHQIVPSAPMVTKNDPTLMFVNSGMAPFKEYFLGNGTPKSNRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGYDTYHHTMFEMLGNWSFGDYFKKEAITWAWELLTEVYGID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++         D+EA+ LWK+I  +  ++I+     DNFW M E GPCGPCS
Sbjct: 121 KDILYVTVFEGSDEDGLKLDQEAYDLWKEI--VPEERILMGNKADNFWEMGEQGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + +EIWNLVFMQ+ ++  +    LP   +DTGMG
Sbjct: 179 EIHVDIRSEEEKAKIPGADLVNMDHPQVVEIWNLVFMQYNRKADKSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+  VLQ+  +NYD D+F  LI+  E +T +KY  N    V  RVI DH+R+ SF IA
Sbjct: 239 FERLCMVLQDVKSNYDTDVFTPLIREIETITNVKYGTNEKVDVAIRVIADHVRAVSFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N  RGYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL + K L
Sbjct: 299 DGQLPSNNTRGYVIRRILRRAVRYGFTFLNKKEPFIYRLVDVLDNKMGKAFPELKEQKQL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           I+  ++ E++ F +TLD+GLVLLD V+ ++   ++++G   F+L DT+G P D+ + IL 
Sbjct: 359 IQNVIKEEEQSFLRTLDQGLVLLDRVIENVN-GKVVSGKKVFELKDTYGFPEDLTELILR 417

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RGL   +   F+ AL+ Q+        G  +   +   + +  +    +F+GYDLL   
Sbjct: 418 ERGLT-YNEEEFDAALKIQQE------GGRKATAIQADDWVVLLEDEEEEFVGYDLLEVD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   RK                           +E    G + ++VF+ TPFY E GG
Sbjct: 471 VRLTRYRK---------------------------IETKKEGVQYQLVFNMTPFYPEGGG 503

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G        +      KK   + +H    +    +    L   +D + R + + N
Sbjct: 504 QVGDKGYVETSNGDVIYVLDTKKENNLIIHI--TKNLPKKLNEPLRAVVDKKQRERTAAN 561

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ILG+HV Q GS +    LRFD +H   +T  EL+ +E+ VN  I   
Sbjct: 562 HTATHLLHQALREILGTHVEQKGSAVHSKYLRFDFSHFSKLTVEELRDVENFVNSRIEGK 621

Query: 647 LP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           LP    R    E+A+A GA AL G KY D VR +          S  LCGGTHV +T +I
Sbjct: 622 LPLEEKRNRPVEEALADGALALFGEKYGDTVRSIRFG------KSIELCGGTHVQNTADI 675

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I SE ++ AGIRRIEAIT    +      +     +   L  +  + V  V ++ +
Sbjct: 676 WHFKIKSEGAVAAGIRRIEAITYDATKEFYFENNRAYYEIKDVLN-NPKDAVKAVTDLKD 734

Query: 766 EYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E  KL+       K K +    +L      I  V F++  + ++D   +K++   L  +I
Sbjct: 735 ENAKLRKQIENLLKDKAKNLKGELKNELKDINGVQFLAKQV-DLDQNGIKNLAFELGGEI 793

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           ++ + +    + E K  +   ++++L+    F+A  + R   K++ GGG GG+P  A +G
Sbjct: 794 KN-LFLFFATATENKVMLTCYISKELVSERGFDAGKVVRELGKLIHGGG-GGQPFFATAG 851

Query: 879 GPNGNKADQAIAGVASFLK 897
           G N     +AI  V  ++K
Sbjct: 852 GKNPGGIPKAIERVKEYVK 870


>gi|299782999|gb|ADJ40997.1| Alanyl-tRNA synthase [Lactobacillus fermentum CECT 5716]
          Length = 882

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/915 (34%), Positives = 488/915 (53%), Gaps = 61/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  +L+FF ++GH  +PS SL+P NDPTL++ NSG+   KN F G+  P    +T
Sbjct: 8   NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEM+GNFS G YFK+ AI  AW+LLT  + F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A + W   +G+  D +  +   DNFW + + GP GP +E+F+D+G
Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHL--LADQDNFWDIGQ-GPSGPDTEVFYDRG 179

Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           + +        E        RY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 180 QEMNNLPEDDPESYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  LI+  E  +  K  G N    V  ++I DH+RS +F I DG LP
Sbjct: 240 IFENAKTNFETDLFMPLIKQVEGFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RR++   + LG  EP +  ++P +   M   YP++++    I   + 
Sbjct: 300 SNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASVIS 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF     RGL LL+ V+    + +   ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 360 SEEDRFSADFKRGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADEGL 419

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR    +  G G    +W +  +    ++++GY  L      
Sbjct: 420 T-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTD---ESKYVGYTDLVVD--- 472

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              ++ V  +   G+  ++A  GQ V+V+FDQTPFYAE GGQ+ 
Sbjct: 473 -------------------NAKVIGLAADGKQADQAEPGQHVDVIFDQTPFYAEMGGQVA 513

Query: 530 DTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           DTG  I +  ++  T    + A      H +     ++      L +D     ++  NH+
Sbjct: 514 DTGQVIDNYGKVVATVKDVQHAPHQQNLHTLELTAPIKKGARYKLVVDRARHLKIEKNHT 573

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS +    LRFD  H   +T  +LK +ED VN+ I + +P
Sbjct: 574 ATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWKEIP 633

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T EI L 
Sbjct: 634 VTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEIGLF 688

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767
            IVSE  + AG+RRIEA+T   A + +  + + L  +A+ LKV     V  RV E+ ++ 
Sbjct: 689 KIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQDQL 748

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++    +   + +L  +          + A    ++  +      +L+ + D  ++K  S
Sbjct: 749 KEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMADDWRQKDYS 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++L   + + KA++L+ V + L     A DL +  A  + GG GGGRP +AQ+GG N 
Sbjct: 809 DVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAINGG-GGGRPTLAQAGGKNP 866

Query: 883 NKADQAIAGVASFLK 897
               +A+   + F+ 
Sbjct: 867 AGISEALKLASQFMN 881


>gi|194476839|ref|YP_002049018.1| alanyl-tRNA synthetase [Paulinella chromatophora]
 gi|171191846|gb|ACB42808.1| alanyl-tRNA synthetase [Paulinella chromatophora]
          Length = 891

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/909 (36%), Positives = 507/909 (55%), Gaps = 53/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF K GH+ + S+ LIP +D T++ T +GM+PFK IF G+E+P   + 
Sbjct: 13  MTGAEIREAFLDFFAKRGHQRMASALLIP-DDSTVLLTIAGMLPFKPIFLGREQPPALSA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKC+R     ND++NVG+T RHHTFFEMLGNFSFG YFKE+AI  AW+L T+ F LD
Sbjct: 72  TSSQKCIRT----NDIENVGKTARHHTFFEMLGNFSFGNYFKEQAIIWAWELSTEVFGLD 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L ++++ ED EA  +W+ + G++  +IIR+   DNFW+    GPCGPCSEI++D   
Sbjct: 128 PANLVVSIFQEDNEAALIWQNLIGVNPKRIIRMGAKDNFWASGPIGPCGPCSEIYYDFHP 187

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
            + G    + E+  R+IE +NLVFM+    ++     L   +IDTGMGLERMA +LQ+K+
Sbjct: 188 DL-GHDDINLEDDSRFIEFYNLVFMESNCDSQGNLTPLENKNIDTGMGLERMAQILQKKS 246

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRG 298
           NNY+ DL   LI+ +  + G+ Y   N     + +VI DH R+ S LI DG+  +N GRG
Sbjct: 247 NNYETDLIFPLIKKAASLAGIDYSEVNEKGKISLKVIGDHSRAISQLICDGVSASNLGRG 306

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRR++RR + + RLLG  +  ++ +  A    M  AYP+L + + +I   L  E+ RF
Sbjct: 307 YILRRLLRRVVRHGRLLGINDHFLVAMGEASIELMSKAYPQLEEKRDIILNELAQEEARF 366

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL+RG  LL  +L    +++ ++G+ AF+LYDT+G PL++ Q+I    G   +D+  F
Sbjct: 367 LETLERGEKLLSDILKS--ENQQISGEQAFELYDTYGFPLELTQEITQEHGRT-VDVAGF 423

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A++ QR RA+   + +       I   + E    T F GY++L  S            
Sbjct: 424 EVAMKAQRQRAKEAIVTIDPTLRSTI-EGIAESIKPTLFFGYEVLDRSC----------- 471

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        V A++ + E+V+EA +G  V+V+ D TPFY E+GGQ+GD G  +G  
Sbjct: 472 ------------QVVALIVKDELVQEASTGDVVKVILDGTPFYGESGGQVGDRGMLLGSE 519

Query: 539 IR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 + I +   + +G+F+H   +++G LR    ++  +D   RR+   +H+ATHLL 
Sbjct: 520 TEKTSLIVIIENVSRNQGLFIHSGRIKKGTLRIGDLVIAKVDTHLRRRAQAHHTATHLLQ 579

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++ + +SQ GS +  D LRFD ++   I+  +L+ IE+ +ND I +   V    M
Sbjct: 580 SALKQLVDASISQAGSLVDFDRLRFDFSYPGAISLEKLEKIENLINDWINEIHRVEVTEM 639

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E A  +GA A+ G KY   VRVV++        S  LCGGTHVS+TGEI L  I+SE+
Sbjct: 640 KLEQAKVNGAIAMFGEKYGAYVRVVNIPN-----VSMELCGGTHVSNTGEIGLFKIISET 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +GIRRIEAI G     +L  +D  +K L    K     V+ RV  + +E +      
Sbjct: 695 GVASGIRRIEAIAGTAVLPYLNDRDRLVKELGDHFKAPPSEVMVRVIALQDELKTTNKAL 754

Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLV 828
              + +L      +       + D   +    + V +  L +    LQ+++  +  ++L 
Sbjct: 755 LTARSELISAKSAILASQVELVGDFQILVSSFTGVQAALLSTAAKQLQEQLGDNTAVLLG 814

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            I +E K S +    +D++ R  NA  +    AK+ GGGG GGR ++AQ+GG N    + 
Sbjct: 815 SILEEGKVSFVAAFGKDVVQRGLNAGKVVNHIAKLCGGGG-GGRANLAQAGGRNLKSFES 873

Query: 888 AIAGVASFL 896
           A+    S L
Sbjct: 874 ALKIAKSEL 882


>gi|313676999|ref|YP_004054995.1| alanyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
 gi|312943697|gb|ADR22887.1| alanyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
          Length = 876

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/932 (33%), Positives = 489/932 (52%), Gaps = 92/932 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FFQ+  H+++PS+ ++  +DPTLMFTN+GM  FK+ F G +      V
Sbjct: 1   MTSSEIRKKFLNFFQEKEHKIVPSAPMVIKDDPTLMFTNAGMNQFKDYFLGNKVAEATRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ +W+LLT  F L 
Sbjct: 61  TDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWSWELLTDIFKLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++         D+EA+  WK    +   +I++   NDNFW M +TGPCGP S
Sbjct: 121 KERLYVTVFEGDKADGIPFDQEAYDFWK--GHIDESRILKGDKNDNFWEMGDTGPCGPAS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D  +        G    + +    +EIWNLVF+QF ++       LP   IDTGMG
Sbjct: 179 EIHVDLRDEADIAKIPGKDLVNNDHPLVVEIWNLVFIQFNRKADGSLHALPAQHIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   +Q K +NYD D+F  L+    +++G KY   +   +  RVIVDH+R+ S  I+
Sbjct: 239 FERICMAIQNKKSNYDTDVFTPLLDELAKISGKKYGELSKIDIAFRVIVDHIRAISLSIS 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    L   EP +  L+P L  +    +PEL   + L
Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYGYTFLDLKEPFLFKLVPILAKQFEEVFPELKAQQEL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           +E+ ++ E+  F +TL+ GL  L+ + + L    +  ++G VAF+LYDT+G PLD+   I
Sbjct: 359 VEKVIKEEETAFLRTLENGLKRLESIKAELSSSGNATISGAVAFELYDTYGFPLDLTALI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F QA+ EQ++R+++ +        E   + +  +    +F+GYD ++
Sbjct: 419 AKENGLT-VDEKGFEQAMNEQKNRSKSAAKM------ETGDWQIVNEGRDVEFVGYDEVK 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R V  +                              +++++V D+TPFYAE+
Sbjct: 472 ADAKILRYRSVKNKNK----------------------------EQIQLVLDKTPFYAES 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG        +++ D +K+ + I      +     + +  +   ID   RR++ 
Sbjct: 504 GGQIGDTGILKVSNETIKVLDTKKENDLIVHFVDKI---PAQLDAKVHAQIDNDRRRKIV 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHL+H AL  +LG HV Q GS ++   LRFD +H   +T  E+  +E  VN+ I 
Sbjct: 561 YNHSATHLVHAALREVLGDHVQQKGSLVSDKLLRFDFSHFSKMTDEEILKVERRVNEKIR 620

Query: 645 QNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P    R +  E+A A GA AL G KY D VR+++ +      +S  LCGG HV +TG
Sbjct: 621 ENIPQQEERNIPIEEAKAKGAMALFGEKYGDTVRMITFDPN----YSVELCGGVHVPATG 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I    I +E+S+ AGIRRIEA+TG++A  + + Q+  LK + + LK S  ++   VE++
Sbjct: 677 NIGQFKITTETSVAAGIRRIEAVTGEKAEEYHLDQEAILKQVNALLK-SPKDLAQAVEQL 735

Query: 764 WEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E  +LQ    K + +           +  K  D++ +   I+  ++  LK +   L+ 
Sbjct: 736 MKEKNELQKSLEKEQSKQAGALKDELIKNAEKQNDISVIISEIALPNADALKKLSFELKN 795

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL----------GGG 866
           ++ S   +L     + K  + +V++E+L+     NA  + R  AK +             
Sbjct: 796 EVDSLFAVLA-CDVDGKPQISVVISENLVESKDLNAGKIIRDLAKNIQGGGGGQAFFA-- 852

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                     +GG       Q +    +  K+
Sbjct: 853 ---------TAGGKKLEGLPQVVLQAKTMAKE 875


>gi|124009945|ref|ZP_01694610.1| alanyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123984029|gb|EAY24407.1| alanyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 883

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/927 (33%), Positives = 483/927 (52%), Gaps = 77/927 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +  +IR  FL+FF++  H+++ S+ L+  NDPTLMFTN+GM  FK+ F G +    + V
Sbjct: 1   MDSKTIRQKFLDFFREKQHQIVDSAPLVVKNDPTLMFTNAGMNQFKDFFLGTKTAENRRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ F+L 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTEVFELP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++         D+EAF +WKK   ++ D+II  +  DNFW M ETGPCGPCS
Sbjct: 121 KDRLYVTVFEGDKGDSLEPDQEAFDIWKKY--INEDRIIYASKEDNFWEMGETGPCGPCS 178

Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D  +        G    +++  + +EIWNLVF+QF +   +    LP   +DTGMG
Sbjct: 179 EIHIDLRDANEIAKTPGKGLVNQDDPQVVEIWNLVFIQFNRMANKSLQNLPDKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+A  +Q K +NYD D+F+ +IQ   +V G +Y       +  RVI DH+R+ SF I 
Sbjct: 239 FERLAMAIQGKKSNYDTDVFQPMIQYLAKVAGTQYGKEEKIDIALRVIADHIRAISFAIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP N G GYV+RRI+RRA+ Y    LG+ EP +  L+P L  +    +PEL Q +  
Sbjct: 299 DGQLPGNNGAGYVIRRILRRAVRYGYSYLGFNEPFLHTLVPMLSEQFAEVFPELKQQQAH 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDI 404
           +   +  E++ F +TL  GL LLD V++   + +   + G   F L D +G P D+   +
Sbjct: 359 VSNIIIQEEKSFLRTLANGLKLLDEVVAKTKEKQQKEIAGIDVFTLSDRYGFPSDLTNLV 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL GID   F + L++Q+ R++  +              +    G ++FIGYD   
Sbjct: 419 ASENGL-GIDEAGFKEELKKQKLRSQQDAQKSTGDW-------IVLNSGESEFIGYDETS 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R++                            E    ++ E+V + TPFYAE+
Sbjct: 471 SFTKVLRYREI----------------------------EVKKKKQYEIVLETTPFYAES 502

Query: 525 GGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT----EMSLVLTIDYQ 578
           GGQ+GDTG      +   + +  +  K E   + H   +    +     ++ +   +  Q
Sbjct: 503 GGQVGDTGSLEFRAEAGTVTVPVIDTKKENDLIIHYSPKNDFTKIADLAQVEVFAQVKEQ 562

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            RR    NHSATHL+H AL  +LG HV Q GS +    LRFD +H+  +T  E+  +E  
Sbjct: 563 RRRLTENNHSATHLVHSALRQVLGQHVEQRGSLVNDVILRFDFSHNAKMTDEEIAEVERI 622

Query: 639 VNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           VN+ I +N+ +  R  +  +E   + GA  L G KY D VRV++ +      +S  LCGG
Sbjct: 623 VNEKIRENIALDERRAVPYKEAIESLGATGLFGEKYGDTVRVITFDEN----YSRELCGG 678

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HV STG I    I++E+S+ +G+RRIEA+T  +A  ++  Q   +  +   LK +  ++
Sbjct: 679 CHVPSTGVIGFFKIITEASVASGVRRIEAVTATKAEEYVQNQVALVNQVKDLLK-NPKDL 737

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKS 811
              +E + +E   L       + Q              +   +NF++  +S   +  LK+
Sbjct: 738 PKAIESLIKEKTDLSKQIEVLENQQVQALKQGLLDTVKQTNGINFIAQKVSLPSADALKN 797

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGG 869
           +   ++ K Q  + M++    + K  + ++++++L+     NA  + +  A+ + GGG G
Sbjct: 798 LAFDVR-KNQDNLFMVLASDIKGKPQIAVMISDNLVEEKSLNAGKIVKELAREIKGGG-G 855

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G+   A +GG +    D+ +     F+
Sbjct: 856 GQAFFATAGGKDATGLDKVVERAEEFV 882


>gi|332170337|gb|AEE19592.1| alanyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 870

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/918 (36%), Positives = 486/918 (52%), Gaps = 72/918 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  FL+FF+   H ++PS+ ++  +DPTLMFTN+GMVPFK  F G   P    +
Sbjct: 1   MKSQEVRKQFLDFFESKKHTIVPSAPMVLKDDPTLMFTNAGMVPFKEYFLGNATPKNARL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           +  QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFKE AI  AW+ LT+   +D
Sbjct: 61  SDTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAIAWAWEFLTEVVKID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY++V++         D+EAF +WK+   +  D+II     DNFW M   GPCGPCS
Sbjct: 121 KDSLYVSVFEGDKEDGLDRDQEAFDIWKQR--IDEDRIIDGNKKDNFWEMGAQGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    + +    +EIWNLVFMQ+ +        LP   +DTGMG
Sbjct: 179 EIHVDIRSAEEKAKVDGKTLINMDHPHVVEIWNLVFMQYNRLADGSLVKLPNQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIA 287
            ER+  VLQ   +NYD D+F  L+   E +T  K   +    +  RVI DH+R+ SF IA
Sbjct: 239 FERLCMVLQGVQSNYDTDVFTPLMSEIETITNSKCGNDEEIDIAVRVIADHVRAVSFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K L
Sbjct: 299 DGQLPSNTGAGYVIRRILRRAIRYGFTFLDMKEPFIYKLVATLVKQMGDAFPELKSQKNL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +R E+  F +TLD+GL+LLD V++     + ++GD AF+LYDT+G P+D+   IL 
Sbjct: 359 MTNVIREEEASFLRTLDKGLLLLDNVIADTK-GDTVSGDKAFELYDTYGFPIDLTALILS 417

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            + L  +D   F  AL+EQ+ R+RA +        E   +++  +    +F+GYD L   
Sbjct: 418 EKNLK-LDEKGFEAALKEQKDRSRAATK------VETDDWNILHEDAEEEFVGYDTLETP 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   RK                            E    G+  ++VF+ TPFY E GG
Sbjct: 471 VKITRYRKT---------------------------ESKKDGELYQLVFNLTPFYPEGGG 503

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G        +      KK   + +H A  +     T+ +    +D + R + ++N
Sbjct: 504 QVGDKGYLETPNGEVVYIIDTKKENNLIIHLA--KNLPRSTDGTFKAVVDAKQRSRTAVN 561

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH  L  +LG+HV Q GS +    LRFD  H   +T  ELK +ED VN  I +N
Sbjct: 562 HTATHLLHQGLRKVLGTHVEQKGSMVHSGNLRFDFAHFSRVTKEELKEVEDFVNARIREN 621

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           L +   R +  + A+  GA AL G KY D VR +          S  LCGGTHV +TG+I
Sbjct: 622 LSLEEQRGIPYDQAVQEGAIALFGEKYGDAVRTIRFG------KSMELCGGTHVKNTGDI 675

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I SE ++ +GIRRIEAIT   A+ +   + E    + + LK +Q  V   +  + +
Sbjct: 676 WHFKITSEGAVASGIRRIEAITSDAAKDYFTSETEAYNQVKATLKGNQDPV-KAITSLLD 734

Query: 766 EYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E   L+       K K Q    DL+     I  V+F++  + ++D+  +K +   L  + 
Sbjct: 735 ENAALKKQVEALIKEKAQNLSGDLAKEFTDIDGVDFLAKKV-DLDAGAIKDLAFKL-GEN 792

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +  + +L    +E KA +   ++++L+   + NA  + R   K + GGG GG+P  A +G
Sbjct: 793 KDNVFILFATEQEGKALLSCYISKELVASKQLNAGTVVRELGKHIQGGG-GGQPFFATAG 851

Query: 879 GPNGNKADQAIAGVASFL 896
           G N    D AIA V ++L
Sbjct: 852 GKNPAGIDAAIAEVKNYL 869


>gi|182418956|ref|ZP_02950213.1| alanyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237667051|ref|ZP_04527035.1| alanine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377239|gb|EDT74807.1| alanyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237655399|gb|EEP52955.1| alanine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 879

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/911 (35%), Positives = 513/911 (56%), Gaps = 50/911 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+FF+  GH  L S SL+P ND +L+  N+GM P K  FTG ++P  
Sbjct: 1   MKFTKTNDLRDAYLKFFESKGHLKLDSFSLVPKNDNSLLLINAGMAPLKPYFTGLQEPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKCVR G    D++NVG T+RH TFFEMLGNFSFG YFK+  I  AW+ LT+  
Sbjct: 61  KRVTTCQKCVRTG----DIENVGITSRHGTFFEMLGNFSFGDYFKKEVIPWAWEFLTEVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ + +LY+T+Y +D+EA++ W  ++ +    I R+   DNFW     GPCGPC+EI F 
Sbjct: 117 EMPKDKLYVTIYLDDDEAYEFWTTLTDVDKSHIFRLGKEDNFWEHG-AGPCGPCTEIHFS 175

Query: 179 QGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           + + +P       E  + ++ IE+WNLVF QF+   K     L   +IDTGMGLER+A V
Sbjct: 176 RTDDVPKNAEEFVELSDADKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +QEK + ++ID  ++++     + G++Y       ++ R+I DH+RS +F+I+D I+P+N
Sbjct: 236 MQEKNSIFEIDTLENILNEVANLAGVRYGENKKTDISLRLITDHIRSITFMISDDIMPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + + LG  +  + +L   +  +   AY EL   +  I++ ++ E
Sbjct: 296 EGRGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDSKEAYAELEAKREYIKKVIKIE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +++F +TLD G+ +L+G +S L     +IL+G   FKLYDT G P+++ ++IL   G + 
Sbjct: 356 EDKFRETLDAGIEILNGFISELKENNKKILSGAEGFKLYDTFGFPMELTKEILEDEGFS- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F++ ++ QR RAR           +            T+F GY            
Sbjct: 415 LDEDAFHEEMKIQRERARNARKVSNYMGADVKTSDAISADVETEFDGYTN---------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N +   V+ ++   +  +    G K  +V D TPFYAE GGQ+GDTG
Sbjct: 465 -------------NQLQGKVEVLIDGEDFADSLTEGNKGILVTDVTPFYAEMGGQIGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D  + ++ D +K   G  VH   V  G ++   ++ L ID + R ++  NH+ATHL
Sbjct: 512 LIYNDSFKAKVVDTKKNMGGKIVHFVEVLSGEVKINDTVTLEIDNERRERIRKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LGSHV Q GS +T + LRFD +H + ++  ++  +ED VN+ I    PVVT 
Sbjct: 572 LDRALVKVLGSHVHQAGSLVTDERLRFDFSHFEGLSEEDILKVEDLVNEAIMSVTPVVTE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+  DA  SGA  +   KY D+VRVV+      G +S  LCGGTH+ +TG+I L  I+S
Sbjct: 632 VMDLNDAKNSGAIGIFDDKYGDKVRVVT-----AGEYSKELCGGTHIDNTGKIGLFKILS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG+ A   +  ++E LK     LK +Q  +  ++E+  +E ++ + 
Sbjct: 687 ESGIAAGTRRIEAVTGKEAVKFINEKEELLKEACGKLKCTQKEITSKIEQNLKEIKEKEK 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             +  K +     L     S  ++  +N +S+ + +VDS  L+ V + ++ K+++ +++L
Sbjct: 747 EISALKAKFAAMGLDDIIASSKEVKGINVVSYELKDVDSDTLREVCEKVKDKVENSVVLL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +      K  +  + ++D +    +   L +  + +LGGGG GGRP MAQ+GG    K +
Sbjct: 807 MS-ENAGKVIICAMASKDAVKNGAHCGKLIKEVSAILGGGG-GGRPDMAQAGGKLPEKIN 864

Query: 887 QAIAGVASFLK 897
            AI      ++
Sbjct: 865 DAIEESYKIVE 875


>gi|58696697|ref|ZP_00372246.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537122|gb|EAL60234.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 845

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/867 (43%), Positives = 532/867 (61%), Gaps = 54/867 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GMV FKNIFTG +K   +   + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMVQFKNIFTGAQKTEMKRAVSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156
           SFG YFKE AI+ AW+ +TKE  LD+ RL ITVY  D+EA+++W+KISG S+DKIIRITT
Sbjct: 61  SFGDYFKETAIEFAWEFITKELSLDKNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITT 120

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
           +DNFWSM  TGPCGPCSEIF+D G         + +EG+R +EIWNLVFM+F +  +   
Sbjct: 121 DDNFWSMGNTGPCGPCSEIFYDHG-------SPNLQEGDRIVEIWNLVFMEFNKDEEGNL 173

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV 276
             LPK  IDTGMGLER+A V+Q   +NYDIDLF  LI  S++  G      N + H++I 
Sbjct: 174 HKLPKKCIDTGMGLERIAAVMQNVHDNYDIDLFSALISKSQEYCGRT---ENKIAHKIIA 230

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE---- 332
           DHLR+++FLIA+G+LP NEGR YVLRR++RRA  Y  LLGY + L+  + P L       
Sbjct: 231 DHLRAAAFLIAEGVLPGNEGRNYVLRRLIRRAARYIHLLGYNDSLLHRVFPVLIDSTSSA 290

Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY 391
            MG  YPELI+AK LIE TL+SE+E F  TL +G+ LL+   + L   + L G+ AFKLY
Sbjct: 291 YMGDIYPELIRAKSLIETTLKSEEENFKDTLMKGISLLEKFTADLKSGDTLPGESAFKLY 350

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G PLDI  DIL  +     D   F+ A+ EQ+ RARA   G G  + E++WF L +K
Sbjct: 351 DTYGFPLDITLDILKEK-KINFDQKGFDDAMGEQKERARAKWAGSGEKSVEQVWFDLIDK 409

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQK 510
           +G T+F+GY+                            + + AIV  + E+++ A  G+K
Sbjct: 410 FGKTKFVGYE----------------------FNEVNDAKILAIVSSKNEVIDSAKEGEK 447

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           + ++ D+TPFY E+GGQ+GDTG  I     + I +   K   +++H  IV+ G +    +
Sbjct: 448 ITIILDKTPFYGESGGQVGDTGSLIKSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNT 507

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +  +ID + R+ L  NHSATHLLH  L  ILG HV+Q GS + PD LRFD +H+  +T  
Sbjct: 508 VAASIDKERRQTLRRNHSATHLLHFVLRKILGDHVTQKGSLVAPDKLRFDFSHNTQVTQD 567

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  +ED VN +I +NL   T+I +   AI  GA AL G KY ++VRVV +        S
Sbjct: 568 QLFLVEDMVNSLIRENLSTSTKIQSMNQAIDEGAMALFGEKYGNQVRVVKIGD------S 621

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTHV  TGEI L  IV+ESS+  G+RRIEA+TGQ A +++   +  LK +A F+K
Sbjct: 622 RELCGGTHVEHTGEIGLFKIVTESSVAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVK 681

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
                ++ R+  + +E ++ +       K  ++ E +   +I  +NF+SH  + + +  +
Sbjct: 682 APVSEIINRLNILNQERKESEAKIKNLYKKLISAESIKSTEINGINFVSHAFTNIPANII 741

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           +  +  LQ++    II      K+ K  ++I V++DL ++ +A +L  ++ +       G
Sbjct: 742 REFV--LQQQKPKTIIAFTATEKD-KTVLIIKVSKDLANKISAKELVSIAVE----KNCG 794

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G   +AQ  G + NK D AI  + S +
Sbjct: 795 GNAELAQ-TGSDSNKIDDAITAICSKI 820


>gi|296170783|ref|ZP_06852355.1| alanine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894598|gb|EFG74335.1| alanine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 901

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/933 (34%), Positives = 482/933 (51%), Gaps = 74/933 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F   GH  +PS+S+I  +DP L+F N+GMV F   F G   P Y   
Sbjct: 1   MQTHEIRKRFLDHFVTAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTNGVSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++I+GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPDRIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMG 229
           +D+GE    GG P ++E+  RYIEIWNLVFMQ E+         +    LP+ +IDTGMG
Sbjct: 176 YDRGEEFGVGGGPIANED--RYIEIWNLVFMQNERGEGTGKTDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL + +I          Y     ++ V +RVI DH R+++ LI
Sbjct: 234 VERVAFILQGVHNVYETDLLRPVIDLVAARAPRGYDAGRHDDDVRYRVIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  A+LL    P++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVTPGNDGRGYVLRRLLRRVIRSAKLLDIEGPIVGDLMATVRDAMGPSYPELVADFGR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L D V   +     + ++G+ AF L+DT+G P+++  ++
Sbjct: 354 IRRIAVAEETAFNRTLVAGSKLFDEVAGTTKAAGAKAISGNDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D I F + + EQR RA+A +        +   +      G T+F G+D L 
Sbjct: 414 AAEAGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELS 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG--------QKVEVVFD 516
                                    + +  I   G+ V     G         +VE+V D
Sbjct: 473 S-----------------------EAKILGIFVDGKRVPVVTHGAHPDGAGAHQVELVLD 509

Query: 517 QTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +TP YAE+GGQ+ D G       G+  R  +TDVQK A+ ++VH   VE G      ++V
Sbjct: 510 RTPLYAESGGQIADEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVV 569

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D + RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P++  + 
Sbjct: 570 AAVDPEWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLSEEQR 629

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             +E+  N  +  +  V T     E A A GA A+ G  Y D VRVV +    GG  S  
Sbjct: 630 TQVEEVTNQAVQADFEVHTFTEQLEKAKAMGAMAMFGEAYPDEVRVVEI----GGPFSLE 685

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV ++ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV 
Sbjct: 686 LCGGTHVHNSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVP 745

Query: 753 QGNVVGRVEEIWEEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDS 806
              V  RV  + E  +  +        A  +           +I +V  ++  +S  + +
Sbjct: 746 SDEVPARVAGLVERLKAAEKELERARLAGARAAAANAAAGAERIGNVRVVAQRMSAGMTA 805

Query: 807 KELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVL 863
            +L+S+   ++ K+ S   ++ L+   +       +       +    A DL +  A V 
Sbjct: 806 GDLRSLAGDIRGKLGSDPAVVALIAEGEGGSVPYAVAANPAAQELGIRANDLIKQLA-VT 864

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG+P +AQ  G + ++ D A+A V S +
Sbjct: 865 VDGRGGGKPDLAQGSGKDPSRIDAALAAVRSEI 897


>gi|116494328|ref|YP_806062.1| alanyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|122264244|sp|Q03B02|SYA_LACC3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116104478|gb|ABJ69620.1| alanyl-tRNA synthetase [Lactobacillus casei ATCC 334]
          Length = 881

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/917 (34%), Positives = 484/917 (52%), Gaps = 61/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K F 
Sbjct: 64  TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K +G+  D I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 FDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           G+                E  RY+EIWN+VF +            P  +IDTGMGLER+ 
Sbjct: 176 GQQFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291
            V+Q     ++ DLF  +I+A+E+++  K       + V+ ++I DH R+ +F I DG L
Sbjct: 236 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDGAL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++ +
Sbjct: 296 PSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQKVI 355

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409
            SE+ RF +TLD G+ LL+ +++ L +D    + G  AFKL+DT+G P+++  +     G
Sbjct: 356 ESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGADAFKLFDTYGFPVEMTNEYAQDEG 415

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  F + +  QR RAR       S  ++     L      ++F G+  L      
Sbjct: 416 L-QVDMAGFKKNMAAQRDRARKARGDRQSMGSQD--KVLMSITTPSKFTGWTELDHKH-- 470

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + ++ IV   ++ +    G   +++FD+TPFYAE GGQ+ 
Sbjct: 471 --------------------ASLQTIVVNDQLQDSVSEG-TAQLIFDETPFYAEMGGQVA 509

Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G        +       + A      H +  +G L T     L++D   R+++S+NH+
Sbjct: 510 DHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTVKGKLETGQQYWLSVDPLRRKKVSLNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I   LP
Sbjct: 570 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIWDALP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +  + M  E+A   GA A+ G KY   VR+V +     G +++   GGTH +++  + L 
Sbjct: 630 ITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSNALGLF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            I SES I AGIRR+EA+T + A  +L  Q + L   A  LK+ Q  NV  +V ++  + 
Sbjct: 685 KITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQLQADL 744

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +  Q   A  + +L  +  +       ++  +  ++  +      EL+ + D  + K  S
Sbjct: 745 KAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKAKQAS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L G     KA++L+ V +      F A DL +  A  +GGGG GGRP MAQ+GG N
Sbjct: 805 DILVL-GTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKN 862

Query: 882 GNKADQAIAGVASFLKK 898
                 A++   + + +
Sbjct: 863 PAGIPAALSEAKTVISQ 879


>gi|312870442|ref|ZP_07730562.1| alanine--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311093999|gb|EFQ52323.1| alanine--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 886

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/915 (33%), Positives = 482/915 (52%), Gaps = 63/915 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  +L+FFQ++GH+++PS SL+P NDPTL++ NSG+   K  F G+  P    +T+
Sbjct: 9   SAQVRRMYLDFFQQHGHKVMPSQSLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMTS 68

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT    F  D
Sbjct: 69  SQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDDWFGFD 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLYIT Y +D +A+  W++  G++ D +  I   DNFW + + GP GP +E+F+D+G+
Sbjct: 125 PARLYITYYPKDHDAYNKWRE-VGVAEDHL--IADEDNFWDIGQ-GPSGPDTEVFYDRGQ 180

Query: 182 CI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+ ++
Sbjct: 181 EFNNLAEDDPESYPGGENERYLEIWNIVFSQFNHTPENTYEPLPHKNIDTGMGLERVVSI 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPA 293
            +    N++ DLF  +I+    ++  K       + V  ++I DH+R+ +F I DG LP+
Sbjct: 241 FENAPTNFETDLFMPIIKQVAALSAGKQYGADKADDVQFKIIADHIRTITFAIGDGALPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GRGYV+RR++RRA+   + LG  EP +  L+P +   M   YPE++Q    I   ++S
Sbjct: 301 NMGRGYVIRRLLRRAVVAGKKLGIDEPFLAQLVPTVGKIMEDYYPEVLQNADYIASVIKS 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E++RF  TL+ GL LL+ V++         ++G  AFKLYDT+G P+++ ++     GL 
Sbjct: 361 EEDRFSATLNGGLNLLNSVIADAKQNCSNQIDGRTAFKLYDTYGFPIELTKEYAADEGLT 420

Query: 412 GIDIISFNQALEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
            +D   F  A+ EQ++RA  A  +  G G    +W   KE    ++++GY  L       
Sbjct: 421 -VDQKGFEAAMTEQQNRARNARDMDNGMGVQTDLWTDFKED---SKYVGYTDLTVDG--- 473

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE-AVSGQKVEVVFDQTPFYAEAGGQLG 529
                              + V  +   G+  +  A S Q +EV+FD TPFYAE GGQ+ 
Sbjct: 474 -------------------AKVIGLAHDGQQADSAAPSDQNIEVIFDTTPFYAEMGGQVA 514

Query: 530 DTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           DTG  I +    +      + A      H +     ++      L +D     ++  NH+
Sbjct: 515 DTGDIIDNYGEKVGRVVDVQHAPNQQNLHRVELTSPIKKGARYKLVVDRARHLKIEKNHT 574

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +L ++E  VN+ I + +P
Sbjct: 575 ATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTAKDLAAVEAMVNEQIFKEIP 634

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL   KY D+VRVV +     G +++  CGG HV +T E+ L 
Sbjct: 635 VTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDHVKNTNELGLF 689

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEY 767
            IVSE  + AG+RRIEA+T   A   L  ++  L+ +A  LK      V  +V  + EE 
Sbjct: 690 KIVSEGGVGAGVRRIEAVTSSDAYDFLQKRNAMLEEVAGDLKAAQIKEVPHQVANLQEEL 749

Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++        + ++  +  +       +      ++  +      +L+ + D+ + K  S
Sbjct: 750 KQANKQVEALQAKIAAQQANNVFDDVQETKKGKLIAAEVKVAGMGQLRQLADSWRAKGLS 809

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L G + + KA++L+ V++  +     A DL +  A  + GG GGGRP++AQ+GG +
Sbjct: 810 DVLVL-GTANDGKANLLVAVSDGKVKAGLKAGDLIKAIASAIKGG-GGGRPNLAQAGGKD 867

Query: 882 GNKADQAIAGVASFL 896
                 A+     +L
Sbjct: 868 PAGIPAALKLAKEYL 882


>gi|78214024|ref|YP_382803.1| alanyl-tRNA synthetase [Synechococcus sp. CC9605]
 gi|123577380|sp|Q3AGN4|SYA_SYNSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78198483|gb|ABB36248.1| alanyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 889

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/907 (35%), Positives = 492/907 (54%), Gaps = 53/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL F+ + GH+ + S+SLIP +DPT++ T +GM+PFK +F GQ++      T
Sbjct: 16  SGEEIREAFLNFYAERGHKRMASASLIP-DDPTVLLTIAGMLPFKPVFLGQQERPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+RAI+ AW+L T  + +D 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQRAIEWAWELSTGVYGIDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KNLVVSVFREDDEAELIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 191 L-GDEDIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+  + G+ Y   N     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAADLAGVDYHQLNDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P ++ +  A    +  A+P +I+ + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGIDKPFLVTMGEAAIALLKGAHPSVIERQEVILAELQREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+       ++G  AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 370 ETLERGEKLLAEVLASKPTQ--ISGAQAFELYDTYGFPLELTQEIAEEQGL-AVDLDGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+EEQR RA+A ++ +     + I   + ++  AT F GY+ L  +             
Sbjct: 427 AAMEEQRQRAKAAAVSIDLTLQDAIDQVVADQ-AATCFEGYEALDHA------------- 472

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+A+V  G     A +G  V+VV D TPFY E GGQ+GD G   G   
Sbjct: 473 ----------SCVQALVVNGGPSTTAKAGDAVQVVLDTTPFYGEGGGQVGDRGVLAGSD- 521

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +   +   ++  +FVH   VERG L    ++   +D   RR+   NH+ATHLL  AL  
Sbjct: 522 LIVRIESVSRSRDVFVHAGRVERGELALGDTVKAQVDRACRRRAQANHTATHLLQAALKQ 581

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD      +T  +L+ +E  +N  I +   +  + M  + A
Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHCPTAVTPDQLQQVETLINGWINEAHALQVQEMAIDQA 641

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV+ES + AG
Sbjct: 642 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVTNTAEIGLFKIVAESGVAAG 696

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-----IH 774
           IRRIEA+ G    ++L  +D  +K L    K     +V RV  + EE +           
Sbjct: 697 IRRIEAVAGPAVLAYLNERDVVVKQLGDRFKAQPAEIVDRVAALQEELKATGKALAAAQA 756

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
                +          + D   +   +  VD   L+    +L  ++  G  +++G   + 
Sbjct: 757 ELAVAKAGALAAKAEAVGDFQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGGLPDP 816

Query: 834 ---KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K  ++    + ++  +  A       AK  GGGG GGRP++AQ+GG +G     A+
Sbjct: 817 GDMGKVILVAAFGQQVIAAKLQAGKFIGGIAKQCGGGG-GGRPNLAQAGGRDGAALPGAL 875

Query: 890 AGVASFL 896
               + L
Sbjct: 876 DAAQAEL 882


>gi|33239500|ref|NP_874442.1| alanyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|81665176|sp|Q7VEG5|SYA_PROMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33237025|gb|AAP99094.1| Alanyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 892

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/915 (36%), Positives = 506/915 (55%), Gaps = 58/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M ++    IR  FL F+ + GHE++PS+SL+P NDPT++ T +GM+PFK +F G +    
Sbjct: 12  MKSLTGEEIRAAFLNFYAERGHEIVPSASLVP-NDPTVLLTIAGMLPFKPVFLGHQDRPS 70

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             VT+ QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L    F
Sbjct: 71  ARVTSCQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSINVF 126

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L+   + I+++ ED+EA ++W+ + G++  +IIR+   DNFWS   TGPCGPCSE+++D
Sbjct: 127 GLNPSHIVISIFREDDEAEQIWRDVIGVNPRRIIRMDEKDNFWSSGPTGPCGPCSELYYD 186

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
               + G      E+  R+IE +NLVFMQ+ + +      L   +IDTGMGLERMA +LQ
Sbjct: 187 FHPEL-GEEEIDLEDDTRFIEFYNLVFMQYNRNSSGTLTSLANCNIDTGMGLERMAQILQ 245

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANE 295
              NNY+ DL   L++    +  ++YE  N     + +VI DH R+   LI DG+  +N 
Sbjct: 246 GVANNYETDLIYPLLEKIASLIDVQYEDLNATIKASFKVIGDHTRACVHLIGDGVSASNL 305

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RR + + RL+G T+P ++ +       M SAYP+L++ + LI + L+ E+
Sbjct: 306 GRGYVLRRLLRRVVRHGRLIGITKPFLVQIAEVAIELMQSAYPQLLERRQLIFKELQREE 365

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF +TL++G  LL  +LS      ++ G+ AF+LYDT+G P+++ ++I        +D+
Sbjct: 366 TRFLETLEKGEKLLAELLSKA--PSVITGEAAFELYDTYGFPVELTEEIAEE-NDLRVDM 422

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A++EQR RA++ ++ +     + I   + E  G T F+GY  L            
Sbjct: 423 KGFKKAMDEQRRRAKSAAMTIDLTLQDTIDKVVSE-VGETNFLGYQQLEQ---------- 471

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V+AIV  G   +E   G K+++V + TPFY E GGQ+GD G   
Sbjct: 472 -------------FSQVQAIVVNGVSSQECNVGDKIDIVLNMTPFYGEGGGQIGDRGIIS 518

Query: 536 GDGIRLQIT----DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                        D  ++ +G FVH  +V+ G+L    ++  T+D  +RR    NH+ATH
Sbjct: 519 SASSDDSECLIEIDSVRRVKGAFVHSGLVKNGVLTLGDNVQCTVDSFSRRCAQANHTATH 578

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL   + S ++Q GS +  D LRFD    +P++ AEL+ IE  +N  I++   +V 
Sbjct: 579 LLQAALKKAVDSDITQAGSLVDFDRLRFDFHFVRPVSGAELEHIEKLINGWISEAHSLVI 638

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+  +A   GA A+ G KY + V        D    S  LCGGTHV++T EI L  IV
Sbjct: 639 SEMSINEAKRVGAIAMFGEKYGEVV-----RVVDVPGVSKELCGGTHVTNTAEIGLFKIV 693

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+ I AGIRRIEAI GQ    +L  +D  +K L+   K     +V RV  + +E + L 
Sbjct: 694 SETGIAAGIRRIEAIAGQGVLDYLNDRDGVVKILSERFKAQSNEIVDRVIALQDEVKSLT 753

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNF-----MSHIISEVDSKELKSVMDALQKKIQ-SGII 825
            +  K + ++        K   V+      +   +  V    ++SV+  L  ++  +  +
Sbjct: 754 KLLVKAQDEVAFTKALSLKNKVVSLTNSQYLIERLDGVTGDAIQSVVKTLVDELGDNAAV 813

Query: 826 MLVG---ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +L G   ++ +KK  ++     +++    +A       A++ GGGG GGRP+ AQ+GG +
Sbjct: 814 VLAGMPDLNDQKKVILVAAFGSEIIAQGLHAGQFLGPIAEICGGGG-GGRPNFAQAGGRD 872

Query: 882 GNKADQAIAGVASFL 896
             K D A+      +
Sbjct: 873 PTKLDDALDLAKERI 887


>gi|255327164|ref|ZP_05368239.1| alanine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
 gi|255295782|gb|EET75124.1| alanine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
          Length = 895

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/927 (35%), Positives = 497/927 (53%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +++FF   GH ++PS+SLI  N+P  MFT +GMVPF   F G+E P +   
Sbjct: 1   MLSQEISKRWIDFFASRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  A++LLT      
Sbjct: 60  TSVQKCIRTL----DIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++T+Y+ D+EAF +W    G  A++I R+   +N+WS  + GP GP SEIF
Sbjct: 116 GFGLDPERLWVTIYEGDDEAFDIWHNKVGFPAERIQRMGMKENYWSTGQPGPAGPDSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G + + +RYIEIWNLVFMQ+++       + +    LPK +IDTG+G+
Sbjct: 176 YDRGPAY-GKEGGPAADDDRYIEIWNLVFMQYQRGEGIGKDDFEILGDLPKKNIDTGLGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281
           ER+A +LQ   N Y+ D  + ++ A+ +++G KY            + V  RV+ DH+RS
Sbjct: 235 ERLAMLLQGVENFYETDQVRPVLDAASKLSGKKYHGSESAEDEGYEDDVRMRVVADHIRS 294

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           S  LIADG+ P+NEGRGY+LRR+MRRA+   RLLG TEP +  L PA    M  A+P + 
Sbjct: 295 SLMLIADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPVLFPASRDAMKGAFPYVA 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLD 399
                I     +E++ F  T++ G   L+  +  +       ++G  AF L+DT+G P+D
Sbjct: 355 DDFERISRIAYAEEKAFLHTIETGTERLEEAVAAAKKDGSNAVSGAEAFALHDTYGFPID 414

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  ++    G+  +D  +F + + EQR RA+A +        +            + F G
Sbjct: 415 LTLEMAAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGAFADLSELRKLVDERGSIFTG 473

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y  LR                         + ++AI+  G  V  A +G K+EVV D+TP
Sbjct: 474 YTELR-----------------------TETKLRAILVDGVSVPAAKAGDKIEVVLDETP 510

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAEAGGQ  DTG   G+G  + + DVQ+  +G+ VH A+V  G + T   +V  +D Q 
Sbjct: 511 FYAEAGGQAADTGVITGNGFIIDVQDVQQPVKGLSVHRAVVREGEVHTGADVVAQVDVQR 570

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR     HS TH++H AL  +LG+  +Q GS      LRFD    + ++ +  + +E+  
Sbjct: 571 RRDGEKAHSGTHIIHAALHQVLGNEATQRGSFNKEGYLRFDFAWGEGLSESAKREVEEVA 630

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I  N  V+TR M   +A A GA +L G KY D VRVV +    GG  S  LCGGTHV
Sbjct: 631 NLAIRDNHEVITREMPIAEAKALGAMSLFGEKYGDVVRVVEI----GGEFSRELCGGTHV 686

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVG 758
            S+ EI  L +++ESS+ +G RR+EA+ G  + +HL  +   +  L   +KV    ++  
Sbjct: 687 GSSAEIGSLSLLTESSVGSGNRRVEALVGLDSFNHLAAERTLVNQLTGLMKVQSSADLPE 746

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813
           ++ +   + +  +   A+ + +    +      +   I  V  ++H   E+D+  ++ + 
Sbjct: 747 KINQTLAKLKAAEKELAQLRREKLQAEAGKLLENAQTIGSVRVLAHDAGELDANGVRDLA 806

Query: 814 DALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
             L+ +  S   ++ V      +  VL+   E   +    A  L R++A VLGGGG GG+
Sbjct: 807 LDLRSRFGSEAAVVAVVGVANGRPVVLVATNEGAREAGVKAGALVRVAAGVLGGGG-GGK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
             +AQ GG + +K   A+  V   + +
Sbjct: 866 DDVAQGGGQDASKIGAALDAVRDAIAQ 892


>gi|283458020|ref|YP_003362628.1| alanyl-tRNA synthetase [Rothia mucilaginosa DY-18]
 gi|283134043|dbj|BAI64808.1| alanyl-tRNA synthetase [Rothia mucilaginosa DY-18]
          Length = 895

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/927 (35%), Positives = 497/927 (53%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +++FF   GH ++PS+SLI  N+P  MFT +GMVPF   F G+E P +   
Sbjct: 1   MLSQEISKRWIDFFASRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  A++LLT      
Sbjct: 60  TSVQKCIRTL----DIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++T+Y+ D+EAF +W    G  A++I R+   +N+WS  + GP GP SEIF
Sbjct: 116 GFGLDPERLWVTIYEGDDEAFDIWHNKVGFPAERIQRMGMKENYWSTGQPGPAGPDSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G + + +RYIEIWNLVFMQ+++       + +    LPK +IDTG+G+
Sbjct: 176 YDRGPAY-GKEGGPAADDDRYIEIWNLVFMQYQRGEGIGKDDFEILGDLPKKNIDTGLGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281
           ER+A +LQ   N Y+ D  + ++ A+ +++G KY            + V  RV+ DH+RS
Sbjct: 235 ERLAMLLQGVENFYETDQVRPVLDAASKLSGKKYHGSESAEDEGYEDDVRMRVVADHIRS 294

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           S  LIADG+ P+NEGRGY+LRR+MRRA+   RLLG TEP +  L PA    M  A+P + 
Sbjct: 295 SLMLIADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPVLFPASRDAMKGAFPYVA 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLD 399
                I     +E++ F  T++ G   L+  +  +       ++G  AF L+DT+G P+D
Sbjct: 355 DDFERISRIAYAEEKAFLHTIETGTERLEEAVAAAKKDGSNAVSGAEAFALHDTYGFPID 414

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  ++    G+  +D  +F + + EQR RA+A +        +            + F G
Sbjct: 415 LTLEMAAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGAFADLSELRKLVDERGSIFTG 473

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y  LR                         + ++AI+  G  V  A +G K+EVV D+TP
Sbjct: 474 YTELR-----------------------TETKLRAILVDGVSVPAAKAGDKIEVVLDETP 510

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAEAGGQ  DTG   G+G  + + DVQ+  +G+ VH A+V  G + T   +V  +D Q 
Sbjct: 511 FYAEAGGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEVHTGADVVAQVDVQR 570

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR     HS TH++H AL  +LG+  +Q GS      LRFD   S+ ++ +  + +E+  
Sbjct: 571 RRDGEKAHSGTHIIHAALHQVLGNEATQRGSFNKEGYLRFDFAWSEGLSESAKREVEEVA 630

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I  N  V+TR M   +A A GA +L G KY D VRVV +    GG  S  LCGGTHV
Sbjct: 631 NLAIRDNHEVITREMPLAEAKALGAMSLFGEKYGDVVRVVEI----GGEFSRELCGGTHV 686

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVG 758
            S+ EI  L +++E S+ +G RR+EA+ G  + +HL  +   +  L   +KV    ++  
Sbjct: 687 GSSAEIGSLTLLTEGSVGSGNRRVEALVGLDSFNHLAAERTLVNQLTGLMKVQSSADLPE 746

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813
           ++ +   + +  +   A+ + +    +      +   I  V  ++H   E+D+  ++ + 
Sbjct: 747 KINQTLAKLKAAEKELAQLRREKLQAEAGKLLENAQTIGSVRVLAHDAGELDANGVRDLA 806

Query: 814 DALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
             L+ +  S   ++ V      +  VL+   E   +    A  L R++A VLGGGG GG+
Sbjct: 807 LDLRSRFGSEAAVVAVVGVANGRPVVLVATNEGAREAGVKAGALVRVAAGVLGGGG-GGK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
             +AQ GG + +K   A+  V   + +
Sbjct: 866 DDVAQGGGQDASKIGAALDAVRDAIAQ 892


>gi|312870710|ref|ZP_07730817.1| alanine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|311093722|gb|EFQ52059.1| alanine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
          Length = 877

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288
           R+ +V+Q+   N++ DLF  +I+ +E+++  K       + V  ++I DH+R+ SF IAD
Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E
Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RF +TL  GL LLD ++  +   K   L+G  AFKL+DT+G P ++  +   
Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  Y  L+  
Sbjct: 414 DAGL-AVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++   G++  ++FD+TPFYAE GG
Sbjct: 470 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        L    +  + A      H +     ++     VL +D Q RR L  
Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I  
Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I
Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + 
Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  R+ Q    + K Q+N    S        I  +  ++ I+      +L+ + D  + +
Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKNQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L      K   ++ +  + +     A DL +++A + GGGG GGRP+MAQ+GG
Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N     +A+  V + L
Sbjct: 861 KNPAGLAKALETVLNEL 877


>gi|297564703|ref|YP_003683675.1| alanyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296849152|gb|ADH62167.1| alanyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 894

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/892 (36%), Positives = 493/892 (55%), Gaps = 66/892 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57
              + IR  +L+FFQ  GH  LPS S+IP +DP+L+F N+GM P K  F G+      P 
Sbjct: 3   MTTAEIREKYLQFFQSKGHLRLPSFSVIPQDDPSLLFINAGMTPLKPYFLGKTPIFHTPE 62

Query: 58  YQ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
            +     VTT QKCVR G    D++NVGRTNRH T FEMLGNFSFG YFK+ AI  AW+ 
Sbjct: 63  GEKISYRVTTCQKCVRTG----DIENVGRTNRHQTVFEMLGNFSFGDYFKKEAILWAWEF 118

Query: 114 LTK--EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAET 166
           LT      L+  R+Y+T+Y+ED+EAF+ W +  GL  +++ R   ++NFW     S    
Sbjct: 119 LTDKRWLGLEPERIYVTIYEEDDEAFEYWTQDVGLPPERLHRFGADENFWPADAPSKGPN 178

Query: 167 GPCGPCSEIFFDQGECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           GPCGPCSEI++D+G             + E  R++EIWNLVF Q+++++      LPK +
Sbjct: 179 GPCGPCSEIYYDRGPEFGADTWADYYQTRESNRFVEIWNLVFPQYDRKDGGILEPLPKPN 238

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283
           IDTGMGL R+A VLQ  T+ Y+ D FK +I    +++G+ YEG + + HRVI +H R+ S
Sbjct: 239 IDTGMGLARVAMVLQGVTDFYETDEFKPIIAKVVELSGVSYEGPSSLAHRVISEHARAVS 298

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F+++DG   +N GRGYV+RR++RRA+ Y  LLG  EP M  L   +   MG  YPEL + 
Sbjct: 299 FILSDGATFSNTGRGYVVRRLLRRAVRYGYLLGLREPFMHRLAAVVAEVMGGVYPELREN 358

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              +++ +R E+ERF +TL++G+  LD +LS L   + L+G+ AF+LYDT+G PLD+  +
Sbjct: 359 LESVQKQIRLEEERFFETLEQGVERLDALLSGLEPGDTLSGEEAFRLYDTYGFPLDLTLE 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYD 461
           I   RG+  +D   F +ALEE +  AR  +           +   ++    G T F+GY+
Sbjct: 419 IADERGIK-VDTEGFQKALEEAQELARQRAAFDKDVFKRPNEALLAIARDSGGTVFVGYE 477

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                      ++ VK ++   + ++EA +G +V+VV D+TPFY
Sbjct: 478 RTE-----------------------ETAQVKLLLAGNQSLDEAPAGTEVQVVLDRTPFY 514

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE GGQ+GD G     G   +++  QK  +GI++H A VE G L+   ++   +D   R 
Sbjct: 515 AEGGGQIGDFGVLEWAGGWAKVSTTQKNPDGIYLHLAKVEEGTLKAGTTVRALVDPHRR- 573

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
               NH+ATHLLH AL  ILG+HV Q GS + PD LRFD TH +P++  EL  IE  VN 
Sbjct: 574 DTEKNHTATHLLHAALRAILGTHVRQAGSYVGPDRLRFDFTHPEPVSPRELARIELLVNR 633

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGG 696
            I  + PV       E+A   GA AL G KY D VRVV+VE     V      S  LCGG
Sbjct: 634 WIQGDFPVSYTYKPLEEAKKEGAMALFGEKYADVVRVVAVEGTADNVAAGTAISKELCGG 693

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HV  TGEI +  I  E ++ +G+RRIEA+TG  A  ++    + L++L+  L V+   +
Sbjct: 694 CHVRRTGEIGMFVIRFEEAVSSGVRRIEALTGTGAVQYVRENLDVLQALSRELGVNPEGL 753

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELK 810
             R+ ++  E +  +    + + +L    L      +  +     +++  +  ++   L+
Sbjct: 754 PERLGKLQNEIKAREKEIERLRRELARAQLGGGTASALKEAGGYQYLAVRLEGLEVGALR 813

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAK 861
           S  D L  K ++ ++ +          ++I ++++      +A  + +   +
Sbjct: 814 SAADELLDKHKADLVAVGSGQN-----LVIKLSKEAQAKGLDAGAVMKRLTE 860


>gi|72383213|ref|YP_292568.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|123620600|sp|Q46I13|SYA_PROMT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|72003063|gb|AAZ58865.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
          Length = 886

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/909 (36%), Positives = 503/909 (55%), Gaps = 53/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  F+ FF ++ H+ L SSSLIP +DPT++ T +GM+PFK IF G ++      T
Sbjct: 15  SGDEIRDAFINFFVQHNHKKLASSSLIP-DDPTVLLTIAGMLPFKPIFLGLKESSTPRAT 73

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L T+ F L+ 
Sbjct: 74  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSTEVFRLNP 129

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + + I+V+ ED EA ++WK++ G+ A++IIR+   DNFWS   TGPCGPCSE++FD    
Sbjct: 130 QNIVISVFKEDLEAEQIWKEVVGVDANRIIRMGAADNFWSSGATGPCGPCSELYFDFKPE 189

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  K     L    IDTGMGLERMA +LQ+K+N
Sbjct: 190 L-GSDEIDLEDDSRFIEFYNLVFMQYNRDLKGNLEPLANCHIDTGMGLERMAQILQKKSN 248

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI A+  +  +KY      N  + ++I DH R+ + LI DG+  +N GRGY
Sbjct: 249 NYETDLIFPLINAAALLAQIKYETTNKKNKTSLKIIGDHCRAVTHLICDGVSASNLGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G  +P +  L       M +AYP+L++ K +I   L+ E+ RF 
Sbjct: 309 ILRRLIRRMIRHGRLVGIIQPFLPQLAEIAIELMKNAYPQLLEKKKIILNELKIEESRFL 368

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  + SH  + ++++G  AF+LYDT+G PL++ ++I   +G   +DI  F 
Sbjct: 369 ETLERGEKLLAEITSH--ECDLISGAQAFELYDTYGFPLELTEEIANEKG-ISVDINGFE 425

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +QR RA+  S+ +       I   +   +  T+F GY+ L                
Sbjct: 426 NEMAKQRKRAKEASVSIDLTEEGSIEREIS-LFDDTRFEGYEKLE--------------- 469

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    +S V  I +  E V++AV G  V+++ ++TPFYAE+GGQ+GD G      +
Sbjct: 470 --------TTSTVIGIFKNNESVKQAVQGDLVKIIVNRTPFYAESGGQIGDKGLITSQDL 521

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +   +  +K + IF+H  IV  G+L    S+ + +    R++ + NH+ATHLL  AL  
Sbjct: 522 EV-SVENVRKKKNIFIHSGIVNTGVLEINSSVQMNVTPSFRQRTTSNHTATHLLQSALKL 580

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            + S VSQ GS ++   LRFD    KP+T  EL+ +E  +N  I ++  +  + M  ++A
Sbjct: 581 SIDSSVSQRGSLVSNHRLRFDFNAPKPLTIKELEDMEARINQWINEDHLIQIKTMPIKEA 640

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +A+GA A+ G KY D VRVV V        S  LCGGTHV+ T ++    I++E+ I +G
Sbjct: 641 MAAGALAMFGEKYGDVVRVVDVPG-----ISMELCGGTHVTRTSQLGTFKIINETGIASG 695

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEAI G     +   +D  +K L+   KV    +V RV  +  E +       K K 
Sbjct: 696 IRRIEAIAGPSVLDYFNERDLVVKELSKSFKVQSYEIVERVSSLQLELKDKTKELIKVKN 755

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI---- 830
           +L +            +     +   +  VD   L+S   +L   +     ++ G     
Sbjct: 756 ELALAKALGLATYAKSVGKSKLLIRRLDGVDGSGLQSAASSLIDHLGKYSAVIFGGIPNQ 815

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K   +   + DL+ D  +A       AK+ GGGG GGRP++AQ+GG      D A+
Sbjct: 816 EIDNKLVFVAAFSPDLVSDGLHAGKFISGVAKMCGGGG-GGRPNLAQAGGSQPQSLDLAL 874

Query: 890 AGVASFLKK 898
                 L +
Sbjct: 875 EKANENLTQ 883


>gi|315653055|ref|ZP_07905983.1| alanine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|315489590|gb|EFU79224.1| alanine--tRNA ligase [Lactobacillus iners ATCC 55195]
          Length = 906

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 30  MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 89

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K
Sbjct: 90  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 145

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF
Sbjct: 146 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 202

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 203 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 262

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288
           R+ +V+Q+   N++ DLF  +I+ +E+++  K       + V  ++I DH+R+ SF IAD
Sbjct: 263 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 322

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E
Sbjct: 323 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 382

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RF +TL  GL LLD ++  +   K   L+G  AFKL+DT+G P ++  +   
Sbjct: 383 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 442

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  Y  L+  
Sbjct: 443 DAGL-AVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 498

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++   G++  ++FD+TPFYAE GG
Sbjct: 499 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 535

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        L    +  + A      H +     ++     VL +D Q RR L  
Sbjct: 536 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 595

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I  
Sbjct: 596 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 655

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I
Sbjct: 656 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 710

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + 
Sbjct: 711 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 770

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  R+ Q    + K Q+N    S        I  +  ++ I+      +L+ + D  + +
Sbjct: 771 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 830

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L      K   ++ +  + +     A DL +++A + GGGG GGRP+MAQ+GG
Sbjct: 831 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 889

Query: 880 PNGNKADQAIAGVASFL 896
            N     QA+  V + L
Sbjct: 890 KNPAGLAQALETVLNEL 906


>gi|259501304|ref|ZP_05744206.1| alanine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|259167274|gb|EEW51769.1| alanine-tRNA ligase [Lactobacillus iners DSM 13335]
          Length = 906

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/917 (35%), Positives = 498/917 (54%), Gaps = 61/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 30  MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 89

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K
Sbjct: 90  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 145

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF
Sbjct: 146 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 202

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 203 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 262

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288
           R+ +V+Q+   N++ DLF  +I+ +E+++  K       + V  ++I DH+R+ SF IAD
Sbjct: 263 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 322

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E
Sbjct: 323 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 382

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RF +TL  GL LLD ++  +   K   L+G  AFKL+DT+G P ++  +   
Sbjct: 383 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 442

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  +  Q+ RAR     L S  ++ I  +L      + F  Y  L+  
Sbjct: 443 DAGL-AVDKEEFDAEMRAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 498

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++   G++  ++FD+TPFYAE GG
Sbjct: 499 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 535

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        L    +  + A      H +     ++     VL +D Q RR L  
Sbjct: 536 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 595

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I  
Sbjct: 596 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 655

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I
Sbjct: 656 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 710

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + 
Sbjct: 711 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 770

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  R+ Q    + K Q+N    S        I  +  ++ I+      +L+ + D  + +
Sbjct: 771 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 830

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L      K   ++ +  + +     A DL +++A + GGGG GGRP+MAQ+GG
Sbjct: 831 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 889

Query: 880 PNGNKADQAIAGVASFL 896
            N     +A+  V + L
Sbjct: 890 KNPAGLAKALETVLNEL 906


>gi|227534477|ref|ZP_03964526.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187876|gb|EEI67943.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 914

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/917 (34%), Positives = 483/917 (52%), Gaps = 61/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 37  MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRI 96

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K F 
Sbjct: 97  TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFG 152

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K +G+  D I+     DNFW + E GP GP SEIF+D+
Sbjct: 153 FDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 208

Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           G+                E  RY+EIWN+VF +            P  +IDTGMGLER+ 
Sbjct: 209 GQQFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 268

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291
            V+Q     ++ DLF  +I+A+E+++  K       + V+ ++I DH R+ +F I DG L
Sbjct: 269 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDGAL 328

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++ +
Sbjct: 329 PSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQKVI 388

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409
            SE+ RF +TLD G+ LL+ +++ L +D    + G  AFKL+DT+G P+++  +     G
Sbjct: 389 ESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGADAFKLFDTYGFPVEMTNEYAQDEG 448

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  F + +  QR RAR       S  ++     L      ++F G+  L      
Sbjct: 449 L-QVDMAGFKKNMAAQRDRARKARGDRQSMGSQD--KVLMSITTPSKFTGWTELDHKH-- 503

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + ++ IV   ++ +    G   +++FD+TPFYAE GGQ+ 
Sbjct: 504 --------------------ASLQIIVVNDQLQDSVSEG-TAQLIFDETPFYAEMGGQVA 542

Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G        +       + A      H +  +G L       L++D   R+++S+NH+
Sbjct: 543 DHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTVKGKLERGQQYWLSVDPLRRKKVSLNHT 602

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I   LP
Sbjct: 603 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIWDALP 662

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +  + M  E+A   GA A+ G KY   VR+V +     G +++   GGTH +++  + L 
Sbjct: 663 ITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSNALGLF 717

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            I SES I AGIRR+EA+T + A  +L  Q + L   A  LK+ Q  NV  +V ++  + 
Sbjct: 718 KITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQLQADL 777

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +  Q   A  + +L  +  +       ++  +  ++  +      EL+ + D  + K  S
Sbjct: 778 KAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKAKQAS 837

Query: 823 GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L G     KA++L+ V +      F A DL +  A  +GGGG GGRP MAQ+GG N
Sbjct: 838 DILVL-GTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKN 895

Query: 882 GNKADQAIAGVASFLKK 898
                 A++   + + +
Sbjct: 896 PAGIPAALSEAKTVISQ 912


>gi|145295754|ref|YP_001138575.1| alanyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|205830038|sp|A4QEK7|SYA_CORGB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|140845674|dbj|BAF54673.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 888

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/921 (35%), Positives = 491/921 (53%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F   F   GH+ +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P ++  
Sbjct: 1   MQTHEIRERFTNHFVNAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFENG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWGLLTGSVA 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 DGGFGLDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228
           I++D+GE   G   G   +  RY+EIWNLVFM+ E+       N +    LPK +IDTGM
Sbjct: 176 IYYDRGEKY-GKEGGPVADDNRYMEIWNLVFMEKERGQGIGKDNFEILGDLPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ+  N Y+ DL + +I  +E +TG KY  +N   +  RVI DH R+   LI
Sbjct: 235 GVERVACILQDVENVYETDLLRPVIDVAETLTGTKYGSDNTSDIRFRVIADHSRTGMMLI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+   +  
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEQFMNTIMDTMTPSYPEIADNRER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F KTL  G  L +   +         + G  AF L+DT+G P+D+  ++
Sbjct: 355 IMRVAVTEERAFLKTLVSGTHLFEEAATSIKAAGSTKVAGAQAFALHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D+  F+  + EQRSRA+A S     G T+   +        T F G++ L 
Sbjct: 415 AAEAGLE-VDVEGFDSLMAEQRSRAKADSQAKKHGHTDLSIYREWVDNNPTVFTGFEELD 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+
Sbjct: 474 S-----------------------QSKVLGLLSDGAKISEATEGQEVEVILDQSPLYAES 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQLGD G  +     L + DVQK  + ++VH A+V  G L     +V ++D Q R    
Sbjct: 511 GGQLGDRGQILLGDTVLDVHDVQKIGKKLWVHKALVANGGLAVGDEVVASVDKQWRHAAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATHL+H AL  +LG    Q GS   P  LRFD  +++ +T A+++ I+   N+ + 
Sbjct: 571 QAHTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPAQVEQIQAITNEAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGGTHV+ + +
Sbjct: 631 TDWAVNTVETSLEEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVAHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + ++ ESSI +G+RRIEA +G  + ++L  +    + LAS LK     +  RV ++ 
Sbjct: 687 IGPVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAEGLASSLKAPSEELPERVAQLV 746

Query: 765 EEYRKLQLIHAKR-KLQLNVEDL----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
           ++ +  +       + QL  +      +  +I  V  +   +    ++ +L+++   L+ 
Sbjct: 747 DKLKAAEKEIEALHRQQLMAQTADLLNNAQEIGGVTTLLLRVKDNTNAGDLRTIATTLKD 806

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           K+    G++++   +  K   V+      +    ++ +L +L    +  G GGG+  +AQ
Sbjct: 807 KLGDREGVLVIASDNAGKVPFVVAATKAAVARGAHSGNLVKLVGSYI-DGRGGGKADLAQ 865

Query: 877 SGGPNGNKADQAIAGVASFLK 897
             G N    + A   V + ++
Sbjct: 866 GSGANIAGLESAFGAVRAEIE 886


>gi|227529700|ref|ZP_03959749.1| alanine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
 gi|227350366|gb|EEJ40657.1| alanine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
          Length = 884

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/917 (34%), Positives = 504/917 (54%), Gaps = 63/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   NSAQVRRMYLKFFEEHGHKIMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPENPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT    F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDDWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W++  G++ D +I     DNFW + + GP GP +EIF+D+G
Sbjct: 124 DPERLYITYYPKDHDAYNKWRE-VGVAKDHLIP--DEDNFWDIGQ-GPSGPDTEIFYDRG 179

Query: 181 ECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +          E        RY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 180 QEFNNLADDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  LI+ +E+ +G K       + +  ++I DH+R+ +F I DG LP
Sbjct: 240 IFENAPTNFETDLFMPLIKQTEKFSGSKKYGESKEDDIQFKIIADHIRTITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   ++
Sbjct: 300 SNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLENADYIASVIK 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF  TL+ GL LL+ V+++  KD    ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 360 SEEDRFSATLNGGLNLLNNVIANAKKDGSNEIDGRTAFKLYDTYGFPIELTKEYASDEGL 419

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR    +  G G    +W   K+   A++++GY  L      
Sbjct: 420 T-VDEDGFQAAMTEQQNRARNARDMDNGMGVQTDLWTDFKD---ASRYVGYTDLTVD--- 472

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQL 528
                              ++ V  +   G+  ++A  G K +EV+FD TPFYAE GGQ+
Sbjct: 473 -------------------NAKVIGLAHDGKQADDAQPGDKNIEVIFDVTPFYAEMGGQV 513

Query: 529 GDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            DTG  I +   ++      + A      H +     L+      L +D     ++  NH
Sbjct: 514 ADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELNAPLKKGARYKLVVDRIRHLKIEKNH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK++E  VN+ I + +
Sbjct: 574 TATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAKDLKAVEKMVNEQIWKEI 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A   GA AL   KY D+VRVV +     G +++  CGG HV +T E+ L
Sbjct: 634 PVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDHVKNTNELGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766
             IVSE  + AG+RRIEA+T   A + L  +D+ L  +A+ LKV     V  +VE +  +
Sbjct: 689 FKIVSEGGVGAGVRRIEAVTSSDAFNFLQDRDDLLNKVATDLKVAQIKEVPHQVEALQSD 748

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++ Q   A  + ++  +       +  K A+ + ++  +      +L+ + D+ + K  
Sbjct: 749 LKEAQKQSAALQAKIAAQQANNVFENVQKTANGSLIAAEVQVAGMGQLRQLADSWRAKSL 808

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           S +++L G + + KA++L+ V++D +     A DL ++ A  + GG GGGRP++AQ+GG 
Sbjct: 809 SDVLVL-GTANDGKANLLVAVSDDKVKDGLRAGDLIKVIAPAINGG-GGGRPNLAQAGGK 866

Query: 881 NGNKADQAIAGVASFLK 897
                  A+   A +L 
Sbjct: 867 KPEGIQDALKQAADYLN 883


>gi|309805316|ref|ZP_07699367.1| alanine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|308165392|gb|EFO67624.1| alanine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
          Length = 877

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLGLDPDKLYVTVYPKDIDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288
           R+ +V+Q+   N++ DLF  +I+ +E+++  K       + V  ++I DH+R+ SF IAD
Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E
Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RF +TL  GL LLD ++  +   K   L+G  AFKL+DT+G P ++  +   
Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  Y  L+  
Sbjct: 414 DAGL-AVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++   G++  ++FD+TPFYAE GG
Sbjct: 470 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        L    +  + A      H +     ++     VL +D Q RR L  
Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I  
Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I
Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + 
Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  R+ Q    + K Q+N    S        I  +  ++ I+      +L+ + D  + +
Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKNQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L      K   ++ +  + +     A DL +++A + GGGG GGRP+MAQ+GG
Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N     +A+  V + L
Sbjct: 861 KNPAGLAKALETVLNEL 877


>gi|259502864|ref|ZP_05745766.1| alanine-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259169231|gb|EEW53726.1| alanine-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 886

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/916 (33%), Positives = 483/916 (52%), Gaps = 63/916 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  +L+FFQ++GH+++PS SL+P NDPTL++ NSG+   K  F G+  P    +T+
Sbjct: 9   SAQVRRMYLDFFQQHGHKVMPSQSLVPVNDPTLLWINSGVATMKKYFDGKVVPENPRMTS 68

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+  I  AW+LLT    F  D
Sbjct: 69  SQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKDEVIPWAWELLTSDDWFGFD 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLYIT Y +D +A+  W++  G++ D +  I   DNFW + + GP GP +E+F+D+G+
Sbjct: 125 PARLYITYYPKDHDAYNKWRE-VGVAEDHL--IADEDNFWDIGQ-GPSGPDTEVFYDRGQ 180

Query: 182 CIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                     E        RY+EIWN+VF QF    +     LP  +IDTGMGLER+ ++
Sbjct: 181 EFNNLPEDDPESYPGGENERYLEIWNIVFSQFNHTPENTYEPLPHKNIDTGMGLERVVSI 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPA 293
            +    N++ DLF  +I+    ++  K       + V  ++I DH+R+ +F I DG LP+
Sbjct: 241 FENAPTNFETDLFMPIIKQVAALSAGKEYGANKADDVQFKIIADHIRTITFAIGDGALPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GRGYV+RR++RRA+   + LG  EP +  L+P +   M   YPE++Q    I   ++S
Sbjct: 301 NMGRGYVIRRLLRRAVVAGKKLGIDEPFLAQLVPTVGKIMEDYYPEVLQNADYIASVIKS 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E++RF  TL+ GL LL+ V++   ++    ++G  AFKLYDT+G P+++ ++     GL 
Sbjct: 361 EEDRFSATLNGGLNLLNSVIADAKQNGSNQIDGRTAFKLYDTYGFPIELTKEYAADEGLT 420

Query: 412 GIDIISFNQALEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
            +D   F  A+ EQ++RA  A  +  G G    +W   KE    ++++GY  L       
Sbjct: 421 -VDQKGFEAAMTEQQNRARNARDMDNGMGVQTDLWTDFKED---SKYVGYTDLVVDD--- 473

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE-AVSGQKVEVVFDQTPFYAEAGGQLG 529
                              + V  +   G+  +  A   Q +EV+FD+TPFYAE GGQ+ 
Sbjct: 474 -------------------AKVIGLAHDGQQADSAAPDDQNIEVIFDKTPFYAEMGGQVA 514

Query: 530 DTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           DTG  I +   ++      + A      H +     L+      L +D     ++  NH+
Sbjct: 515 DTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELTAPLKKGARYKLVVDRARHLKIEKNHT 574

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +L ++E  VN+ I + +P
Sbjct: 575 ATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTAKDLAAVEAMVNEQIFKEIP 634

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL   KY D+VRVV +     G +++  CGG HV +T E+ L 
Sbjct: 635 VTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDHVKNTNELGLF 689

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEY 767
            IVSE  + AG+RRIEA+T   A   L  ++  L+ +A  LK      V  +V  + EE 
Sbjct: 690 KIVSEGGVGAGVRRIEAVTSSDAYDFLQQRNAMLEEVAGDLKAAQIKEVPHQVANLQEEL 749

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++        + ++  +                 ++  +      +L+ + D  + K  S
Sbjct: 750 KQANKQVEALQAKIAAQQANSVFDEVQTTKGGTLIAAEVKVAGMGQLRQLADRWRAKGLS 809

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L G + + KA++L+ V+++ +     A DL +  A  + GG GG RP++AQ+GG +
Sbjct: 810 DVLVL-GTANDGKANLLVAVSDEKVKAGLKAGDLIKAIASAIKGG-GGSRPNLAQAGGKD 867

Query: 882 GNKADQAIAGVASFLK 897
                 A+     +L+
Sbjct: 868 PAGIPAALKLAKEYLE 883


>gi|19552844|ref|NP_600846.1| alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|62390515|ref|YP_225917.1| alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|24418687|sp|Q8NQ22|SYA_CORGL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21324401|dbj|BAB99025.1| Alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|41325852|emb|CAF21641.1| ALANYL-TRNA SYNTHETASE [Corynebacterium glutamicum ATCC 13032]
          Length = 888

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/921 (35%), Positives = 490/921 (53%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F   F   GH+ +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P ++  
Sbjct: 1   MQTHEIRERFTNHFVNAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFENG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWGLLTGSVA 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY +D+EA ++W+K  G+ +++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 DGGFGLDPERLWVTVYLDDDEAAEIWEKKIGVPSERIQRLGMADNYWSMGVPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228
           I++D+GE   G   G   +  RY+EIWNLVFM+ E+       N      LPK +IDTGM
Sbjct: 176 IYYDRGEKY-GKEGGPVADDNRYMEIWNLVFMEKERGQGIGKDNFDILGDLPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ+  N Y+ DL + +I  +E +TG KY  +N   +  RVI DH R+   LI
Sbjct: 235 GVERVACILQDVENVYETDLLRPVIDVAETLTGTKYGSDNTSDIRFRVIADHSRTGMMLI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+   +  
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEQFMNTIMDTMTPSYPEIADNRER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F KTL  G  L +   +         + G  AF L+DT+G P+D+  ++
Sbjct: 355 IMRVAVTEERAFLKTLVSGTHLFEEAATSIKAAGSTKVAGAQAFALHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D+  F+  + EQRSRA+A S     G T+   +        T F G++ L 
Sbjct: 415 AAEAGLE-VDVEGFDSLMAEQRSRAKADSQAKKHGHTDLSIYREWVDNNPTVFTGFEELD 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+
Sbjct: 474 S-----------------------QSKVLGLLSDGAKISEATEGQEVEVILDQSPLYAES 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQLGD G  +     L + DVQK  + ++VH A+V  G L     +V ++D Q R    
Sbjct: 511 GGQLGDRGQILLGDTVLDVHDVQKIGKKLWVHKALVANGGLAVGDEVVASVDKQWRHAAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATHL+H AL  +LG    Q GS   P  LRFD  +++ +T A+++ I+   N+ + 
Sbjct: 571 QAHTATHLIHAALRQVLGPTALQAGSMNKPGYLRFDFNYTEQLTPAQVEQIQAITNEAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGGTHV+ + +
Sbjct: 631 TDWAVNTVETSLEEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVAHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + ++ ESSI +G+RRIEA +G  + ++L  +    + LAS LK     +  RV ++ 
Sbjct: 687 IGPVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAEGLASSLKAPSEELPERVAQLV 746

Query: 765 EEYRKLQLIHAKR-KLQLNVEDL----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
           ++ +  +       + QL  +      +  +I  V  +   +    ++ +L+++   L+ 
Sbjct: 747 DKLKAAEKEIEALHRQQLMAQTADLLNNAQEIGGVTTLLLRVKDNTNAGDLRTIATTLKD 806

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           K+    G++++   +  K   V+      +    ++ +L +L    +  G GGG+  +AQ
Sbjct: 807 KLGDREGVLVIASDNAGKVPFVVAATKAAVARGAHSGNLVKLVGSYI-DGRGGGKADLAQ 865

Query: 877 SGGPNGNKADQAIAGVASFLK 897
             G N    + A   V + ++
Sbjct: 866 GSGANIAGLESAFGAVRAEIE 886


>gi|258648967|ref|ZP_05736436.1| alanine--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260850577|gb|EEX70446.1| alanine--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 874

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/920 (36%), Positives = 482/920 (52%), Gaps = 75/920 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G  +P  +  
Sbjct: 1   MTANEIRESFKRFFESKGHLIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGHREPKSRRQ 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFKE AI+ A++ L     +D
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEEAIEFAYEYLVGVLKID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
              LY+TV++         D+EA  +W +      D II    +DNFW M ETGPCGPCS
Sbjct: 121 PANLYVTVFEGSPDEGLSRDDEAAAIWGR--HFPEDHIINGNKHDNFWEMGETGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +++  + IEIWNLVFMQ+ ++       LP+  IDTGMG
Sbjct: 179 EIHIDIRSAEEKAAVAGRELINKDHPQVIEIWNLVFMQYNRKADGTLDALPQRVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+  V+Q K +NYD D+F+ ++    +++G +Y       +  RVI DHLR+ SF IA
Sbjct: 239 FERLCMVMQGKQSNYDTDVFRPILNKIAELSGRRYGESTETDIAMRVIADHLRAISFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   E  M  L+P L  EMG AYPEL   + L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFMYRLVPTLVEEMGEAYPELAAQRDL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I   ++ E++ F +TL  G+ LL+GV+         ++ G+ AF L+DT+G PLD+ + I
Sbjct: 359 ITRVMKEEEDSFLRTLATGISLLEGVMKETKDGGSSVVKGEKAFTLFDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   FN  ++ Q+ RAR+      +      W  L E  G + F+G+D LR
Sbjct: 419 CAENGLK-VDEDGFNVEMQRQKERARSA-----ASVETGDWVILSE--GESHFVGWDTLR 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +  +   RKV  +K                                E+V D TPFYAE 
Sbjct: 471 QACHILRYRKVQQKKQTY----------------------------YELVIDTTPFYAEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD+G        ++I D +++           +R         +  +D   RR   
Sbjct: 503 GGQVGDSGVLRSANETVEIFDTKQENNLSIHL---TKRLPENPAAEFMAEVDEAARRSCE 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLL  AL  +LG+HV Q GS +TP  LRFD++H + +T  EL+ +E  +N  I 
Sbjct: 560 ANHSATHLLDQALREVLGAHVEQKGSLVTPTYLRFDLSHYQKVTPEELRQVERIINRRIR 619

Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +++P    R +  E+A   GA AL G KY DRVRVV          S   CGG HV STG
Sbjct: 620 EDIPLQDHRDVPIEEAKRMGAIALFGEKYGDRVRVVQF------DKSVEFCGGCHVRSTG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I L  IVSESS+ AGIRRIEA+T + A      Q + L  L +    +  ++   V   
Sbjct: 674 RIGLFRIVSESSVAAGIRRIEAVTAEAAEEMCYRQHDTLNDLRALFN-NVKDISVAVHNA 732

Query: 764 WEEYRKLQLIHAK---RKLQLNVEDL--SCHKIADVNFMSHII-SEVDSKELKSVMDALQ 817
            EE  +L+    K    +++   ++L        D+  + +++  E     +K +   L 
Sbjct: 733 IEENDELKKEVEKFMQLRVKELGKELMKIAENRGDIKLLKYVVKDEWAPDLIKDLAFQLS 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++   +  ++G  +  K  + +++++ L+   + NA  L R +AK++ GG GGG PH A
Sbjct: 793 AQLPENLFCVIGSHQGGKPLLTVMISKQLVESKQLNAGQLVREAAKLIKGG-GGGAPHFA 851

Query: 876 QSGGPNGNKADQAIAGVASF 895
            +GG + N    A+  V   
Sbjct: 852 TAGGKDLNGLTAAVDKVVEL 871


>gi|300815902|ref|ZP_07096126.1| alanyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300531831|gb|EFK52893.1| alanyl-tRNA synthetase [Escherichia coli MS 107-1]
          Length = 784

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPGALASVKGWV 779


>gi|323341496|ref|ZP_08081737.1| alanine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323091107|gb|EFZ33738.1| alanine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 910

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/921 (33%), Positives = 493/921 (53%), Gaps = 65/921 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+FF+  GH+++ S+ L+P +DPTL++ NSG+   K  F G   P  
Sbjct: 31  MKELSSAQVRQMYLDFFKGKGHDVMKSAPLVPHDDPTLLWINSGVATMKKYFDGTVVPKN 90

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  +
Sbjct: 91  HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSEE 146

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +D  +LY+TVY +D+ A + W K  G+    I      DNFW + E GP GP SEIF
Sbjct: 147 WFAMDPEKLYVTVYPKDDAARECW-KEVGVEDSHIYE--AEDNFWDIGE-GPSGPDSEIF 202

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E ERY+EIWN+VF +F  +       LP  +IDTGMGLE
Sbjct: 203 YDRGQEMNNVSEDDPENYPGGENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMGLE 262

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV----TGMKYEGNNIVNHRVIVDHLRSSSFLIA 287
           R+ +V Q    N++ DLF  +I  + ++         +    ++ +VI DH R+ +F I 
Sbjct: 263 RVVSVFQHAKTNFETDLFMPIIDETAKMAKGDVHYGDDAEKDISFKVIADHARAVTFAIG 322

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP+NEGRGYV+RR++RRA+ + + LG     +  L+P +   M SAYPE+++    I
Sbjct: 323 DGALPSNEGRGYVIRRLIRRAVMHGQKLGVEGAFLYKLVPIVGKIMESAYPEVLEQSEYI 382

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           ++ +R+E++RF +TL  G+ LL  ++S      +  L G   FKLYDT+G PL++ ++I 
Sbjct: 383 QKVIRNEEDRFNETLKDGVGLLADLISETKAKGETKLAGAGVFKLYDTYGFPLELTKEIA 442

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +GL  +D   F++ +++Q+ RAR+      S   +     L +    ++++GY+ L  
Sbjct: 443 ADQGL-DVDKAGFDEEMQKQKERARSARGNAKSMGVQNGL--LTDIKTPSEYVGYEKL-- 497

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                    I+K I+   ++V+    G+  +V+FD+TPFYAE G
Sbjct: 498 ---------------------AADGILKDIIVDNKLVDVVSEGE-AQVIFDKTPFYAEMG 535

Query: 526 GQLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    +  ++       + A      H +     ++ +    L ++ +   ++ 
Sbjct: 536 GQVADKGIIKNEDGKVVAEVKDVQHAPNGQNMHTLRVLAEMKKDAKYRLEVNVEFHDKVK 595

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  AL  +LG H  Q GS + P+ LRFD T     T  EL+ +E  VN+ I 
Sbjct: 596 KNHTATHLLDQALRDVLGEHTHQAGSLVEPNYLRFDFTKMGATTPEELEKVEKIVNEKIW 655

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            N+PV T + + E A   GA AL   KY D VRVV       G +S   CGG HV +T E
Sbjct: 656 ANMPVETVVTDIESAKKLGAIALFTEKYGDTVRVVK-----AGNYSMEFCGGNHVENTNE 710

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763
           I L  IVSES + AG+RRIEA+T + A  +L  ++  LK  A+ +KV     V  +V+ +
Sbjct: 711 IGLFKIVSESGVGAGVRRIEAVTSKEAFEYLEHRNVLLKETAAEMKVAQIKEVPHKVQGL 770

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ ++L+   +  + +   +           +A    ++  +      +L+S+ D  ++
Sbjct: 771 QEQIKELENKVSALEDKFASQQAKDVFKNVQTVAGKTLIAAAVKVSGMNQLRSLADQWKE 830

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S +++L   S + K S+++  ++D +     A DL +  A ++GGGG GGRP++AQ+
Sbjct: 831 KSLSDVLVLGSASGD-KVSLIVAASDDAIKSGIKAGDLIKAIAPLVGGGG-GGRPNLAQA 888

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG       +A+     +L +
Sbjct: 889 GGKKPEGLPEALKAAEKWLAE 909


>gi|325846721|ref|ZP_08169636.1| alanine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481479|gb|EGC84520.1| alanine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 870

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/905 (34%), Positives = 501/905 (55%), Gaps = 54/905 (5%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + +R  +L FF  K  H +L S SLIP +D +L+  N+GM P K  FTG++K      T+
Sbjct: 7   NELRKEYLNFFGSKKNHTVLKSFSLIPEDDDSLLLINAGMAPLKKYFTGEKKMKNNRATS 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R G    D++ VG T RH TFFEMLGNFSFG YFK  AI  A++ LT+  ++D+ 
Sbjct: 67  SQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAFEFLTENLEIDKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            L+++VY++D+EA+K+W +  GLS D+I+R    DNFW + E GPCGP SEIF D+G   
Sbjct: 123 LLWVSVYEKDDEAYKIWNEEIGLSKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGVEK 181

Query: 184 ---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                     +++ +R++E+WNLVF QF +   +E   L   +IDTGMGLERMA VLQ K
Sbjct: 182 AIDENDNKPGNDDSDRFMEVWNLVFTQFNKNINKEYTPLLHPNIDTGMGLERMAMVLQNK 241

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++ID+ +++I+  E+++  KY     + ++ RVI DH ++ +F+++DGI P+NE RG
Sbjct: 242 DNIFEIDVNQNIIREIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEKRG 301

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + +LLG     +  ++  +       Y EL+  K  I   ++ E+  F
Sbjct: 302 YVLRRLIRRAFRHGKLLGIEGEFLSSVIEYVIDSYKDEYDELVDRKDKIISVIKKEEANF 361

Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             T+D GL +L+  +  L ++    L+G+ AFKLYDT+G PLD+ ++IL    L  +D  
Sbjct: 362 QNTIDSGLDILNEYIKDLRENNKDTLDGEDAFKLYDTYGFPLDLTKEILTENNLK-VDTK 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ +E QR+ AR         + + I     +++  T+F+GYD L             
Sbjct: 421 EFDKQMENQRNLARNARKSDAGWSLDSIN---IDEFDKTEFVGYDDLE------------ 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      V + +  +    E V     G K  V+ D+T FYAE GGQ+ DTG  I 
Sbjct: 466 -----------VKANIIGLFDDKEKVSFIKEGNKGIVISDKTSFYAEGGGQVADTGLIIT 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              + ++ +VQKK E I  +  +++  +          +D + R  ++ NH+ATHLL  A
Sbjct: 515 GSAKAKVYNVQKKNEIIIHYVEVIDGDLNL--AKADFIVDKERRLDITRNHTATHLLDQA 572

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  IL   V Q GS +  + LRFD T+   ++  E++ IE+ +N+ I Q L V   IM  
Sbjct: 573 LRNILNEDVKQAGSLVDEEKLRFDFTYPNALSDDEIEKIENEINEKIRQQLKVKKEIMPY 632

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +++   GA  L   KY D VRVVS+       +S  LCGG HV+++ E+++  I+ ESS 
Sbjct: 633 KESEKLGAIGLFEDKYKDMVRVVSI-----DDYSIELCGGCHVNNSSEVLMFKILQESSA 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +GIRRIEAITG++   +L      +  ++  LK +  N++ + E + EE + L+    K
Sbjct: 688 ASGIRRIEAITGRKVYEYLNSNLGLINVVSKALKTNPKNILLKAESLNEEIKNLKSDIQK 747

Query: 777 RK---LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K    +   +D+         +  + H     D   L++  + +++K +  I++   ++
Sbjct: 748 LKEFNEKDVYKDIENEVQDANGIKLLVHKFENEDLDTLRNFEERIKEKYKDLIVVFATVN 807

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K      V++ L +R+NA  + +  +K+ GG G GG+ + AQ+GG + +K D+A+  
Sbjct: 808 ND-KIVFTASVSDSLTNRYNAGKIVKEVSKITGGNG-GGKKNFAQAGGKDISKLDEALKK 865

Query: 892 VASFL 896
           V   +
Sbjct: 866 VYELI 870


>gi|302190972|ref|ZP_07267226.1| alanyl-tRNA synthetase [Lactobacillus iners AB-1]
          Length = 877

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/917 (35%), Positives = 498/917 (54%), Gaps = 61/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288
           R+ +V+Q+   N++ DLF  +I+ +E+++  K       + V  ++I DH+R+ SF IAD
Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E
Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RF +TL  GL LLD ++  +   K   L+G  AFKL+DT+G P ++  +   
Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  +  Q+ RAR     L S  ++ I  +L      + F  Y  L+  
Sbjct: 414 DAGL-AVDKEEFDAEMRAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++   G++  ++FD+TPFYAE GG
Sbjct: 470 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        L    +  + A      H +     ++     VL +D Q RR L  
Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I  
Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I
Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + 
Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  R+ Q    + K Q+N    S        I  +  ++ I+      +L+ + D  + +
Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L      K   ++ +  + +     A DL +++A + GGGG GGRP+MAQ+GG
Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N     +A+  V + L
Sbjct: 861 KNPAGLAKALETVLNEL 877


>gi|312873707|ref|ZP_07733752.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|325911933|ref|ZP_08174336.1| alanine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|311090705|gb|EFQ49104.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|325476235|gb|EGC79398.1| alanine--tRNA ligase [Lactobacillus iners UPII 143-D]
          Length = 877

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288
           R+ +V+Q+   N++ DLF  +I+ +E+++  K       + V  ++I DH+R+ SF IAD
Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E
Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RF +TL  GL LLD ++  +   K   L+G  AFKL+DT+G P ++  +   
Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  Y  L+  
Sbjct: 414 DAGL-AVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++   G++  ++FD+TPFYAE GG
Sbjct: 470 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        L    +  + A      H +     ++     VL +D Q RR L  
Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I  
Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I
Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + 
Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  R+ Q    + K Q+N    S        I  +  ++ I+      +L+ + D  + +
Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L      K   ++ +  + +     A DL +++A + GGGG GGRP+MAQ+GG
Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N     QA+  V + L
Sbjct: 861 KNPAGLAQALETVLNEL 877


>gi|261880084|ref|ZP_06006511.1| alanine-tRNA ligase [Prevotella bergensis DSM 17361]
 gi|270333239|gb|EFA44025.1| alanine-tRNA ligase [Prevotella bergensis DSM 17361]
          Length = 886

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/935 (34%), Positives = 477/935 (51%), Gaps = 88/935 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++ +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     L
Sbjct: 61  RTNSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEFLVDVLHL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D   LY+TV++         D+EA K W K   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 DPADLYVTVFEGSPEENIPRDDEAAKYWSK--HLPEDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWN+VFMQF +++      L    IDTGM
Sbjct: 179 SEIHIDSRPAEEKAKKPGRELVNMDDPQVIEIWNIVFMQFNRKSDGSLEPLAMNVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNHR 273
           G ER+  +LQ K +NYD D+F+ +I+  E  +G KY                    +  R
Sbjct: 239 GFERLVRMLQGKNSNYDTDIFQPIIKEIEIHSGKKYGFTTPSGKDGKAADNQEKIDIAMR 298

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332
           VI DHLR+ +F IADG LP N   GYV+RRI+RRA+ YA   L      M  LLP L  E
Sbjct: 299 VIADHLRTVAFSIADGQLPGNAKAGYVIRRILRRAVRYAYTFLDQRHAFMFKLLPVLIQE 358

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKL 390
           MG  YPEL   + LI   ++ E++ F +TL++G+ LL+G +  L +     L+G  AF+L
Sbjct: 359 MGGTYPELPAQQELISRVMKEEEDSFLRTLEKGIQLLNGDMEELREQGKTQLDGTKAFRL 418

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + I    GL+ +D   FN  + +Q+ RAR       +      W  LKE
Sbjct: 419 FDTYGFPLDLTELICRENGLS-VDEQGFNAQMTKQKERARNA-----AAVENSDWVVLKE 472

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G  +F+GYD       +   RKV  +K                               
Sbjct: 473 --GEQEFVGYDYTEYECNITRYRKVTQKKKSF---------------------------- 502

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            EV+ D TPFY E GGQ+GD G  + +   + + D +++                     
Sbjct: 503 YEVMLDHTPFYGEMGGQVGDQGVLVNEAETIDVIDTKRENNQSVHII---RTLPKDPNAG 559

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D   R   + NH+ATHLL +AL  +LG HV Q GS ++ D LRFD  H + +T  
Sbjct: 560 FMACVDTDKRTASAANHTATHLLDYALKKVLGDHVEQKGSYVSADTLRFDFAHFQKVTDE 619

Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           EL+ +E  VN ++ ++ P+   R    E+A   GA AL G KY D+VRVV          
Sbjct: 620 ELREVERLVNRLVREDHPMDEHRDTPVEEAKKMGAVALFGEKYGDKVRVVRFGP------ 673

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   CGG H  STG I +  I+SESS+ AG+RRIEA+TGQ+    +   ++ ++ +    
Sbjct: 674 SCEFCGGIHAKSTGCIGMFKILSESSVAAGVRRIEAMTGQKCEEAMYTLEDTVRYIKGVF 733

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV 804
             +  ++   +E+  EE  +++      + Q               +  +N +  +I  V
Sbjct: 734 N-NSKDLKSTIEKFIEENAQMKKEMESFRSQAVDRTAKTLAERVQTVNGMNVVKAVIP-V 791

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKV 862
                K ++  +++ I + +I ++G     K  + ++++ED++     NA  + R +AK+
Sbjct: 792 QPASAKDIVFKIRELIPANLICVIGSVYNDKPMLSVMLSEDMVKEHNLNAGQMVREAAKL 851

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + GG GGG+PH AQ+GG N +    A+  V     
Sbjct: 852 IQGG-GGGQPHYAQAGGKNKDGLSVAVDKVVELAN 885


>gi|298372626|ref|ZP_06982616.1| alanine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275530|gb|EFI17081.1| alanine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 867

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/914 (36%), Positives = 493/914 (53%), Gaps = 73/914 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N    R  FL+FF+   H+++PS+ ++  +DPTLMFTN+GM  FKNI  G +   Y  V
Sbjct: 1   MNSKETRKAFLDFFRGKQHKIVPSAPMVIKDDPTLMFTNAGMNQFKNIILGNDPIKYTRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ LT+   LD
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEFLTEVIKLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++         D+EA  +W++   L  ++II     DNFW M + GPCGPCS
Sbjct: 121 KDRLYVTVFEGSKEDGLSRDDEAAAMWEQF--LPKERIIDGNKKDNFWEMGDVGPCGPCS 178

Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           GL   +    + IEIWNLVFMQ++++       LP   IDTGMG
Sbjct: 179 EIHIDIRPQAERDAVDGLTLVNGSHPQVIEIWNLVFMQYDRKADGSLTSLPNKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIA 287
            ER+   LQ K++NYD D+F+ +IQ   +++GM Y  +    V  RVI DH+R+ +F IA
Sbjct: 239 FERLCMALQGKSSNYDTDIFQPIIQEIAKISGMSYRQDAKTDVAMRVIADHIRTIAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG  E  M  L+P LC+ MG  + E+I  + L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQREAFMYRLVPILCSVMGDNFTEIISQRDL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE+ ++ E+E F +TL+ G+ LL+  +       +L+G+VAF LYDT+G PLD+ + IL 
Sbjct: 359 IEKVIKEEEEAFLRTLETGIRLLEKNMPTAK-GGVLSGEVAFTLYDTYGFPLDLTELILR 417

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G+  +D+  F+  +++Q+ RAR       +      W  + +  G + F+GYD     
Sbjct: 418 ENGMT-VDVAEFDSEMKKQKERARNA-----ATVETDDWVVVSD--GDSLFVGYDQYCTE 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   RKV  +                              +  ++V  QTPFYAE GG
Sbjct: 470 TKIIRYRKVKQKNK----------------------------EYYQLVLSQTPFYAEKGG 501

Query: 527 QLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+GD G   G +   L      K    + VH A  ++       +    I+ ++R   + 
Sbjct: 502 QVGDRGKLTGSEDGSLVEIFDTKTENNLHVHLA--DKLPSNVAQTFTAEINTESRLATAR 559

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATH+LH AL  +LG HV Q GS +  D LRFD +H + +T  E++ +E   N  I  
Sbjct: 560 NHTATHILHEALREVLGKHVEQKGSYVCADNLRFDFSHFQKMTDDEIRRVETIANRRIRD 619

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           N P+   R +   +A A GA AL G KY + VRVV          S  LCGGTHVS TG+
Sbjct: 620 NYPLEEMRQLPIAEARAMGAIALFGEKYGETVRVVKFGS------SVELCGGTHVSRTGD 673

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I ++ IV+ESS+ AG+RRIEAITG+     +   +  + S       +  +++  ++   
Sbjct: 674 IGMVKIVAESSVAAGVRRIEAITGEAVEKLIYMHEYVISSAKELFNNTP-DLLKAIQHAV 732

Query: 765 EEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E ++LQ       + K+    ++L      +  +  +    + +    +K++M  L+  
Sbjct: 733 KENKELQKRVEDFSREKIASMCQELLKEARTVNGIRQIHLKTT-LPPDMIKTLMFQLRNT 791

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
               +  ++G   + K S+ ++V++DL+ + FNAV + R +AK + GGG GG+P  AQ+G
Sbjct: 792 SNDNLFAVIGSVHDNKPSLTVLVSDDLVAKGFNAVQIVRQAAKHIQGGG-GGQPFFAQAG 850

Query: 879 GPNGNKADQAIAGV 892
           G N N  D AIA  
Sbjct: 851 GKNPNGLDDAIAEA 864


>gi|254821812|ref|ZP_05226813.1| alanyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 904

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/932 (34%), Positives = 473/932 (50%), Gaps = 72/932 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F G   P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPEYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK RAI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRRAIELAWTLLTNSVEQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LWK+I+GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERIWATVYFDDDEAVQLWKEIAGLPDERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G          + E  RYIEIWNLVFMQ E+         +    LP+ +IDTGMG+
Sbjct: 176 YDRGPEFGVEGGPIANED-RYIEIWNLVFMQNERGEGTGKEDFEILGPLPRKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------EGNNIVNHRVIVDHLRSSS 283
           ER+A +LQ   N Y+ DL + +I A        Y         ++ V +RVI DH R+++
Sbjct: 235 ERVAFILQGVHNVYETDLLRPVIDAVAARAPRGYGLSGPEGNHDDDVRYRVIADHSRTAA 294

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            LI DG+ P N+GRGYVLRR++RR +  A+LL    P++  L+  +   MG +YPEL+  
Sbjct: 295 ILIGDGVTPGNDGRGYVLRRLLRRVIRSAKLLDIEGPIVGDLMATVRDAMGPSYPELVAD 354

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
              I     +E+  F +TL  G  L D V   +     + ++G  AF L+DT+G P+++ 
Sbjct: 355 FDRIRRIAVAEETAFNRTLAAGSKLFDEVAGTTKASGAKAISGSDAFTLHDTYGFPIELT 414

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
            ++    GL  +D + F + + EQR RA+A +        +   +      G T+F G+D
Sbjct: 415 LEMASEAGL-QVDEVGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGPTEFTGFD 473

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG----QKVEVVFDQ 517
            L                          + +  I   G+ V     G     +VE+V D+
Sbjct: 474 ELTS-----------------------EAKLLGIFVDGKRVPVVTHGTEGVDRVELVLDR 510

Query: 518 TPFYAEAGGQLGDTGCAIGD----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           TP YAEAGGQ+ D G   G       R  +TDVQK A+ ++VH   VE G      +++ 
Sbjct: 511 TPLYAEAGGQIADEGTISGTGASGSARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIA 570

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D Q RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD      ++  +  
Sbjct: 571 AVDPQWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALSDEQRT 630

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE+  N  +  +  V T     E A A GA A+ G +Y D VRVV +    GG  S  L
Sbjct: 631 QIEEVTNQAVQADFEVHTFTEQLEKAKAMGAIAMFGERYPDEVRVVEI----GGPFSLEL 686

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHV ++ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV  
Sbjct: 687 CGGTHVHNSAQIGPVTILGESSVGSGVRRVEAYVGLESFRHLAKERALMAGLASSLKVPS 746

Query: 754 GNVVGRVEEIWEEYRKLQLIHAK-----RKLQLNVEDLSCHKIADVNFMSHIIS-EVDSK 807
             V  RV  + E  +  +    +      K           +I +V  ++  ++  + + 
Sbjct: 747 DEVPARVANLVERLKAAEKELERARLAGAKAAATDAAAGAERIGNVRVVAQRMTGGMTAG 806

Query: 808 ELKSVMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864
           +L+S++  ++ K+     ++ L+   +       +       D    A DL +  A  + 
Sbjct: 807 DLRSLVGDIRGKLGGDPAVVALIADGEGGSVPYAVAANPAAQDLGLRANDLVKKLAAAV- 865

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G GGG+  +AQ  G +    D A+A + S +
Sbjct: 866 DGRGGGKADLAQGSGKDPTGIDAALAAIRSEI 897


>gi|329919606|ref|ZP_08276595.1| alanine--tRNA ligase [Lactobacillus iners SPIN 1401G]
 gi|328937411|gb|EGG33833.1| alanine--tRNA ligase [Lactobacillus iners SPIN 1401G]
          Length = 877

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288
           R+ +V+Q+   N++ DLF  +I+ +E+++  K       + V  ++I DH+R+ SF IAD
Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E
Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RF +TL  GL LLD ++  +   K   L+G  AFKL+DT+G P ++  +   
Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  Y  L+  
Sbjct: 414 DAGL-VVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++   G++  ++FD+TPFYAE GG
Sbjct: 470 H----------------------ARLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        L    +  + A      H +     ++     VL +D Q RR L  
Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I  
Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I
Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + 
Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  R+ Q    + K Q+N    S        I  +  ++ I+      +L+ + D  + +
Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L      K   ++ +  + +     A DL +++A + GGGG GGRP+MAQ+GG
Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N     +A+  V + L
Sbjct: 861 KNPAGLAKALETVLNEL 877


>gi|220912769|ref|YP_002488078.1| alanyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
 gi|219859647|gb|ACL39989.1| alanyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
          Length = 898

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/925 (34%), Positives = 488/925 (52%), Gaps = 64/925 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +++FF   GH  +PS+SL+  +DP+L+FT +GMVPF    T +E+  Y   
Sbjct: 5   MKSQEITKRWVDFFVSKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEAPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 64  TSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKYAWELLTTSVDDG 119

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L    L++TVY+ED+EA +LW K +G+ A++I ++   DN+W+  + GP GPCSEI+
Sbjct: 120 GYGLPPELLWVTVYEEDDEAKELWLKNTGVPAERIQKMGKADNYWNTGQPGPAGPCSEIY 179

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   +  RYIEIWNLVFMQ++      + +      LPK +IDTG+G+
Sbjct: 180 YDRGPAY-GIEGGPLADETRYIEIWNLVFMQYQIDNVRSKDDFDIVGELPKKNIDTGLGM 238

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281
           ER+A +LQ   N Y+ D  + +I  + +++G +Y            + V  RV+ DH+RS
Sbjct: 239 ERLAMILQGVENMYETDQVRPVIDKAAELSGKEYTSAETPDDPHHTDDVRMRVVGDHIRS 298

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LI+DG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP + 
Sbjct: 299 ALMLISDGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEQACLPDLLPASRDAMKGVYPVVE 358

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDI 400
                I     +E++ F +T+  G   L+  +      ++ L+G+ AF L+DT+G P+D+
Sbjct: 359 TDFARISRIAYAEEKAFLRTIASGTARLEEAVKESKAANKQLSGEDAFALHDTYGFPIDL 418

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D  +F   ++EQR RA+A + G   G  +   F      G T F GY
Sbjct: 419 TLEMAEEAGLK-VDEAAFRSLMQEQRQRAQADAKGKKGGHADLSAFQDILAQGETVFTGY 477

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
             L G                        S V+ ++  G  V++A +G ++E+V  +TPF
Sbjct: 478 TELDG-----------------------ESRVRGLLTGGRPVQQAATGDEIELVLSETPF 514

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAEAGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G +  +  +   +D + R
Sbjct: 515 YAEAGGQAADTGLITGDGFVVEVLDVQRPVKGLSVHKAIVREGEIGADSLVRAAVDRERR 574

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                 H+ TH++H AL  ILG   +Q GS      LRFD    + +++A    IE+  N
Sbjct: 575 HAAEQAHTGTHIVHAALHQILGPEATQRGSFNKAGYLRFDFAWGEGLSTATRSEIEEVSN 634

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  N  V T++M   +A A GA AL G  Y   VRVV +     G  S  LCGGTHV+
Sbjct: 635 LAIRNNYAVETKVMGLAEAKALGAMALFGENYGSEVRVVEI----DGAWSRELCGGTHVA 690

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  I  L ++ E S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R+
Sbjct: 691 NTSLIGSLSLLGEQSVGSGNRRVEAFVGMEAFRHLAAERALVTELTDLLKVPSGQLADRI 750

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVD-SKELKSVMD 814
                + +  +    + + +           S    A V+ ++H    V  + +++ +  
Sbjct: 751 SATLAKLKATEKELDRLRKEQLAASAAQLVNSAKDAAGVSLIAHDAGSVSGADDIRGLAL 810

Query: 815 ALQKKIQS-GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRP 872
            L+ ++ S    + V      +  VL+   E        A  L RL+A VLGGGG GG+ 
Sbjct: 811 DLRNRLGSAPAAVAVAGVANDRPLVLVATNEAARNAGVKAGALVRLAAGVLGGGG-GGKD 869

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
            +AQ GG +  K   A+A +   ++
Sbjct: 870 DVAQGGGTDAGKVGAALAAILDAVE 894


>gi|218294683|ref|ZP_03495537.1| alanyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218244591|gb|EED11115.1| alanyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 881

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/912 (38%), Positives = 505/912 (55%), Gaps = 60/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57
              + IR  +L FF+  GH  LPS SLIP NDP+L+FT++GM P K  F G +       
Sbjct: 1   MRTAEIREKYLSFFESKGHLRLPSFSLIPENDPSLLFTSAGMAPLKPYFLGAKPIFGGRE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++ +TT QKC+R G    D++NVGRT RH+TFFEMLGNFSFG YFK+ AI  AW+ LT+ 
Sbjct: 61  WRRITTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAILWAWEFLTEH 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPC 172
             LD  RL++TVY++D+EA+ +W+ + G+  ++I R   ++N+W          GP GPC
Sbjct: 117 LKLDPERLWVTVYEDDDEAYAIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176

Query: 173 SEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQ----NKQERFILPKMSIDT 226
           SEIF+D+G               G+R++EIWNLVF Q+++Q           LP+ +IDT
Sbjct: 177 SEIFYDRGPAFGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGL R+A +LQ+  + Y  D F  +I+    ++G  Y G   V+HRVI DH+R+    +
Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFYPIIERVALLSGRPYLGKESVSHRVIADHVRAVVAAL 296

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+  +N GRGYV+RR++RRA+ +  LLG  EP +  L P +   +G  YPE+ +    
Sbjct: 297 ADGVTFSNTGRGYVIRRLLRRALRHGYLLGLAEPFLHRLAPVVAELLGDFYPEMRENLQA 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I  
Sbjct: 357 VEKQIRLEEERFLETLEGGLRRLDALLSGLKPGEVLPGQEAFRLYDTYGFPLDLTVEIAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464
            RG  G+D   F +A+EEQ+ R+RA           + ++   L  + GAT+F+GY  L 
Sbjct: 417 ERGY-GVDTEGFKRAMEEQQERSRAAMAFEREIFKRSAQVLEELYAERGATEFLGYGTLE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V A++   E + EA  G +V+VV D+TPFYAE 
Sbjct: 476 -----------------------AEAQVLALLAGDESLPEAGPGTEVQVVLDRTPFYAEG 512

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G     G R ++    K   GIF+H A VE G+L     +   +D   RR   
Sbjct: 513 GGQIGDFGLLEWPGGRARVETTLKTERGIFLHRARVEEGVLGVGERVRAVVD-PRRRDTE 571

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+   EL+ IE  VN  I 
Sbjct: 572 RNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKGEELERIELLVNRWIM 631

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-GVHSSALCGGTHVSSTG 703
            + PV  R +  E+A   GA AL G KY + VRVV VE     G+ S  LCGGTHV  TG
Sbjct: 632 ADFPVTWRYLPLEEAKKEGAMALFGEKYGEVVRVVRVEGSPVPGLESKELCGGTHVRRTG 691

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    I SE ++ AG+RRIEA+TG+ A     G   +LK+LA  L+V +  +  R+E++
Sbjct: 692 EIGAFLIRSEEAVSAGVRRIEAVTGEGAIRFARGALSRLKALAERLEVGEAALEERLEKL 751

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             E++  +      K +L    L     +  +   + + +  +  +D   L+   D L  
Sbjct: 752 LAEFKAREKEVESLKARLVQAALGGGGVALEEKGGLRWAALELPGLDMAALRQAADDLVN 811

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +     ++L G         ++ +++   +R   A  L +   +  GG G GG+  +AQ 
Sbjct: 812 RGADVALVLSGGQA------VLKLSKGAQERGLEAGSLFQALTQRAGGRG-GGKGALAQG 864

Query: 878 GGPNGNKADQAI 889
           GG +  +A  A+
Sbjct: 865 GGLDPERAKAAL 876


>gi|309805990|ref|ZP_07700016.1| alanine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|312872876|ref|ZP_07732938.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|325913725|ref|ZP_08176086.1| alanine--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|308167593|gb|EFO69746.1| alanine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|311091610|gb|EFQ49992.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|325476925|gb|EGC80076.1| alanine--tRNA ligase [Lactobacillus iners UPII 60-B]
          Length = 877

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288
           R+ +V+Q+   N++ DLF  +I+ +E+++  K       + V  ++I DH+R+ SF IAD
Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E
Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RF +TL  GL LLD ++  +   K   L+G  AFKL+DT+G P ++  +   
Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  Y  L+  
Sbjct: 414 DAGL-AVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++   G++  ++FD+TPFYAE GG
Sbjct: 470 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        L    +  + A      H +     ++     VL +D Q RR L  
Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I  
Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I
Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + 
Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  R+ Q    + K Q+N    S        I  +  ++ I+      +L+ + D  + +
Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L      K   ++ +  + +     A DL +++A + GGGG GGRP+MAQ+GG
Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N     +A+  V + L
Sbjct: 861 KNPAGLAKALETVLNEL 877


>gi|313471497|sp|B8B4H5|SYAP_ORYSI RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags:
           Precursor
 gi|218197887|gb|EEC80314.1| hypothetical protein OsI_22356 [Oryza sativa Indica Group]
          Length = 996

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/926 (35%), Positives = 496/926 (53%), Gaps = 70/926 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  +IR  FL+F+   GH++LPSSSL+P +DPT+  T +GM+ FK IF G+E       T
Sbjct: 100 SGDAIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCAT 158

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI  AW+L TKEF L  
Sbjct: 159 TSQKCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKEAITWAWELTTKEFGLPP 214

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+I+V+ +D+EAF +W    G+  ++I R+  +DNFW+   TGPCGPCSEI++D    
Sbjct: 215 ERLWISVFQDDDEAFSIWHNEVGVPKERIKRLGEDDNFWTSGATGPCGPCSEIYYDFYPE 274

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       +  R+IE +NLVFMQ+ +++      L + +IDTGMGLERMA +LQ+  N
Sbjct: 275 -RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPN 333

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  +  + Y   +     N ++I DH+R+  +LI+DG++P+N GRGY
Sbjct: 334 NYETDLIFPIIEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGY 393

Query: 300 VLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RR +   RL+G             +  L     +      P++   +  I   L
Sbjct: 394 VVRRLIRRVVRTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEIDPDVESRRKSILGEL 453

Query: 352 RSEDERFGKTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           + E+ RF +TL+RG  LLD +L        + G    L+G   F LYDT+G P++I  +I
Sbjct: 454 QREELRFVQTLERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITAEI 513

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG+  +D+  F+  +E QR +++A    +      +    + +    T+F+GYD L 
Sbjct: 514 AGERGVI-VDMKGFDMEMENQRKQSQAAHNVVKLSVGNET--EIVKSIPDTEFLGYDSL- 569

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   +++VK ++  G  V     G  VE+  D+TPFYAE+
Sbjct: 570 ----------------------SATAVVKGLLVNGNSVNVVSEGSDVEIFLDRTPFYAES 607

Query: 525 GGQLGDTGCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           GGQ+GD G               ++I DVQK    IFVH   +++G +     +   +D 
Sbjct: 608 GGQVGDNGFLYVYGEEDAKQKAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEIDAAVDA 667

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R+    +H+ATHLL  AL +I+GS  SQ GS +  D LRFD    +P++  EL  IE 
Sbjct: 668 KLRQGAKAHHTATHLLQSALKSIIGSETSQAGSLVAFDRLRFDFNFHRPLSEEELMKIES 727

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  ++    + T++M+ +DA  +GA A+ G KY ++VRVV V        S  LCGGT
Sbjct: 728 LVNQWVSSATHLETKVMDLQDAKNAGAIAMFGEKYGEQVRVVEVPG-----VSMELCGGT 782

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HVS+T EI    I+SE  I +G+RRIEA+ G     ++  +D  ++ L S LKV   +V 
Sbjct: 783 HVSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCARDNYMRCLCSSLKVKAEDVN 842

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSV 812
           GRVE I EE R  +   +  + ++ V            I +   +   + +VD+  LKS 
Sbjct: 843 GRVETILEELRTTRNEVSSLRSKIAVLKAASLANKATTIDNTRVVVENMGDVDADGLKSA 902

Query: 813 MDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            + L   ++    ++L     + K S++   +  ++     A       AK+ GGGG GG
Sbjct: 903 AEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGVVKMGIQAGKFVGGIAKLCGGGG-GG 961

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P+ AQ+GG        A+      +
Sbjct: 962 KPNFAQAGGRKPENLPGALEKARDEI 987


>gi|300768023|ref|ZP_07077929.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308181070|ref|YP_003925198.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|300494372|gb|EFK29534.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308046561|gb|ADN99104.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 880

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/920 (35%), Positives = 489/920 (53%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + S IR  +L+FF + GH ++PS+SL+P +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLSSSEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVGRT RHHT FEMLGNFS G YFK+ AI  AW+LLT  K
Sbjct: 61  PRMTSSQKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D  +LY+TVY +D +A K W + +G+  D II++   DNFW + + GP GP SEIF
Sbjct: 117 WFGWDPDKLYMTVYPKDTDAAKFW-EATGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIF 172

Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE          E        RY+E+WN+VF QF    +     LP+ +IDTGMGLE
Sbjct: 173 YDRGEAFNNLADDDPENYPGGENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +V Q    N++ DLF  +I  +E+++  K       + V+ +VI DH R+ +F I+D
Sbjct: 233 RVVSVFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M S YP++++    IE
Sbjct: 293 GALPSNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + SE+ RF +TL+ GL LL+ +++   +   + L G  AFKLYDT+G P ++ ++   
Sbjct: 353 KIVASEESRFNETLNDGLNLLNNLIAETKQAGHDTLAGKDAFKLYDTYGFPFELTKEYAG 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              L  +D   F   ++ QR RAR       S   ++    L +    ++++GYD L   
Sbjct: 413 DEDL-DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSL--LIDIKTPSEYVGYDEL--- 466

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                V   +  I+    +V+   SGQ  E++F +TPFYAE GG
Sbjct: 467 -------------------TNVQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + D    +      + A      H +     +R + +  L +D     ++  
Sbjct: 507 QVADRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLKPMRKDATYTLNVDLAFHNKVEK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LG H  Q GS + PD LRFD TH   +T  EL  +E  VND I  
Sbjct: 567 NHTATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LPV     ++E     GA A+   KY   VRVVS+     G +S    GGTHV ++ E+
Sbjct: 627 ALPVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSEL 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IVSE+ I AG RRIEA+T + A   L G+++ LK +A+ +K  +  +   +V ++ 
Sbjct: 682 GLFKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + +  Q   A  + +L  +           +     ++  I      +L+ + D  + K
Sbjct: 742 ADLKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L  +  E K ++L+ V++D +     A DL +  A  +GGGG GGRP +AQ+G
Sbjct: 802 QYSDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVGGGG-GGRPTLAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G        A+     +L +
Sbjct: 860 GKKPAGLPAALKAAHEWLAE 879


>gi|313115845|ref|ZP_07801279.1| alanyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621843|gb|EFQ05364.1| alanyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 887

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/914 (36%), Positives = 496/914 (54%), Gaps = 55/914 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L FF+  GH  L S  L+P NDP+L+  NSGM P K  F  QE+P    VTT
Sbjct: 6   LNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKC+R      D++ VG T RH TFFEMLGNFSF  YFKE  I  AW+ LT  +   + 
Sbjct: 66  CQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTSDEWMAIP 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+I+VY+ED+EA+ +W K  G++ D ++R+   DNFW    +GPCGPCSEI+FD+G 
Sbjct: 122 KDRLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDRGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWNLVF QF+   K     L + +IDTGMGLER+A V+Q 
Sbjct: 181 EYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D  + ++   E++    Y  ++   ++ RVI DH+RS +F+++DGILP+NEGR
Sbjct: 241 VGNLFEVDTVQSVLHHVERIANKTYGEDDKTDISIRVITDHIRSCTFMVSDGILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG T P ++ L+  +     SAYPEL +    I++ + +E+  
Sbjct: 301 GYVLRRLLRRAARHGRMLGITRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEEAN 360

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+ ++  L    + +L G   FKL DT G PLD+ ++I   +G   ID 
Sbjct: 361 FARTIDAGMNILNNMIDGLEKAHEHLLKGLDVFKLNDTFGFPLDLTKEIAAEQG-IEIDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+  + +Q+ RARA  L        +  F        T F GY+ L            
Sbjct: 420 EGFHAEMTKQKERARAERLKKNISGWSEDLFGALNAE-PTVFTGYETLND---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQLGDT 531
                        + +V A+  +  + +   + ++    V VV D+TPFYAE GGQ  D 
Sbjct: 469 -------------TGVVVALSDEETLTDAIATDEEAKDGVLVVLDKTPFYAEMGGQAADH 515

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G        L++ DV+K  +G +VH  ++E GI++    L   +D + R  ++ NH+ATH
Sbjct: 516 GMLNSADCSLRVLDVKKTPKGYYVHTCVLESGIVKVGDHLTAQVDKEYRMAIARNHTATH 575

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG HV Q GS    +   FD TH   +T  EL  ++  VND I +++ V  
Sbjct: 576 LLQAALREVLGDHVHQAGSYQDAEITHFDFTHFSAVTPEELARVQKIVNDKIYESMNVTV 635

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M  E+A   GA AL G KY   VRVV +E       S+  CGGTHV +T +I    IV
Sbjct: 636 REMPIEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKIV 690

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKL 770
           SE+S+ AGIRRIEA+TG+        Q+  L ++AS LK +    +  R E +  E + L
Sbjct: 691 SEASVAAGIRRIEAVTGRNLLIRANLQEAMLHTVASTLKANNVTALPVRAEAVMAENKAL 750

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                + K Q+    +     +  +I  V   S   +      L+ + D ++ K     +
Sbjct: 751 AKELEEIKAQVAASKVTSLFDNAEEIGGVKIASAYFTGTTGDTLRGMCDTIRDKAVKPAV 810

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            ++    E K ++ + VT+   ++   A  L +  A + GG G GG+P  A +G  +  K
Sbjct: 811 AVLVGKAEDKITMAVTVTKQAQEKGLKAGALVKEIAAIAGGKG-GGKPDFAMAGLKDETK 869

Query: 885 ADQAIAGVASFLKK 898
            D+A+A V++ +KK
Sbjct: 870 IDEALAAVSAIVKK 883


>gi|256391573|ref|YP_003113137.1| alanyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256357799|gb|ACU71296.1| alanyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 889

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/922 (35%), Positives = 499/922 (54%), Gaps = 62/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L+FFQK GH ++PS+SLI  NDPT + T +GM PFK  F G++   +   
Sbjct: 1   MESAEIHRRWLDFFQKKGHTVVPSASLI-SNDPTTLLTIAGMAPFKPYFLGEQPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH +FF+M GNFSFG YFKE AI +AW+L T      
Sbjct: 60  TSVQKCVRTL----DIEEVGKTTRHGSFFQMCGNFSFGDYFKETAIPMAWELCTTPVSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  ++++TVY +D+EA ++WKK +G  A++I R+   +N+WSM   GPCGPCSE+F
Sbjct: 116 GFGLDPEKIWVTVYLDDDEAEEIWKK-AGFPAERIQRLGMKENYWSMGVPGPCGPCSELF 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +   ERY+E WNLVFMQFE+    ++   P        SIDTG+GL
Sbjct: 175 YDRGPEF-GEAGGPAVNDERYMEFWNLVFMQFERGAGGDKGGFPILGELPSKSIDTGLGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+AT+LQ   N Y+ID  + ++  +  + G+ Y  +    V+ RV+ DH+++++ +I D
Sbjct: 234 ERLATILQGVNNLYEIDTSRAILDKAASIAGVTYGRDTRTDVSLRVVTDHVKTATMMIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           GI P NEGRGYVLRR+MRRA+   RLLG     +  L+      MG AYPELI     I 
Sbjct: 294 GITPGNEGRGYVLRRLMRRAIRNMRLLGAHGATIKDLVEITIGAMGQAYPELIADASRIV 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F +TL  G  + + V   +      + +GD AFKL+DT G P+D+  ++  
Sbjct: 354 AVAVAEETSFLQTLRTGSAMFETVADEAKASGSAVFSGDQAFKLHDTFGFPIDLTLEMAS 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
             GL+ +D   F + ++EQR +A+A +    +G  +   +  L +  G + F GY  +  
Sbjct: 414 EAGLS-VDEEGFRRLMKEQRDQAKADARAKKTGHADMSAYRELLDAAGPSAFTGYHEVSS 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                    ++KA++  G++   A  G +VE+V D+TPFYAE G
Sbjct: 473 -----------------------EGLLKAMLVNGQVGSSAKPGDEVELVLDRTPFYAEGG 509

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +G+G   ++ DVQK    +  H AIV  G +         +D   R  +S
Sbjct: 510 GQLADHGLIRLGNGALAEVVDVQKPVGDLIAHRAIVRDGEVVLGAEAWGEVDTARRAAIS 569

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATH++H A   +LG   +Q GS  +P   RFD      +  + L  +E  VN+++ 
Sbjct: 570 RAHTATHMVHKAFRELLGETATQAGSENSPGRFRFDFASPGAVPHSVLADVEQRVNELLI 629

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +L V  ++M++ +A A GA AL G KY DRVRVVSV     G  +  LCGGTHV +TG 
Sbjct: 630 DDLSVTAQVMSQPEAKAMGAMALFGEKYGDRVRVVSV-----GEWAHELCGGTHVDNTGR 684

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++SESSI +G+RR+EA+ G  A + L  +   +  LA  +K     +V RV  I 
Sbjct: 685 LGLVKLLSESSIGSGVRRVEALVGTDAYNFLAREHVLVSQLAEVVKARPEELVERVGGIM 744

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + R  +   +  K    ++           +  V  ++H       + +L+ ++  ++ 
Sbjct: 745 TKLRDAEKEISALKAGQLLQIAGSLVDGASDVHGVAVVTHQAPDGASADDLRKLVLDVRG 804

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++ +   ++   +   +  V+++ T +        A +L R +AK LGGGG GG+  +AQ
Sbjct: 805 RLGTRPAVVAVAAAAGERPVVVIATNEGSRGLGLKAGELVRSAAKTLGGGG-GGKDDVAQ 863

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            GG +      A+ GV   + +
Sbjct: 864 GGGTDATAIPAALEGVGRAVAE 885


>gi|160942602|ref|ZP_02089847.1| hypothetical protein FAEPRAM212_00076 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446081|gb|EDP23084.1| hypothetical protein FAEPRAM212_00076 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103506|emb|CBL01050.1| alanyl-tRNA synthetase [Faecalibacterium prausnitzii SL3/3]
          Length = 886

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/914 (35%), Positives = 493/914 (53%), Gaps = 55/914 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L FF+  GH  L S  L+P NDP+L+  NSGM P K  F  QE+P    VTT
Sbjct: 6   LNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKC+R      D++ VG T RH TFFEMLGNFSF  YFK+  I  AW+ LT  +   + 
Sbjct: 66  CQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKDEVIPWAWEFLTSDEWMAIP 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+I+VY+ED+EA+ +W K  G++ D ++R+   DNFW    +GPCGPCSEI+FD+G 
Sbjct: 122 KDRLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDRGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWNLVF QF+   K     L + +IDTGMGLER+A V+Q 
Sbjct: 181 EYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVMQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D  + ++   E + G  Y  +    ++ RVI DH+RS +F+++DGILP+NEGR
Sbjct: 241 VGNLFEVDTVQSVLHHVEHIAGKTYKQDPKTDISIRVITDHIRSCTFMVSDGILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG   P ++ L+  +     SAYPEL +    I++ + +E+  
Sbjct: 301 GYVLRRLLRRAARHGRMLGIDHPFLVDLVETVIQSSESAYPELREHDAYIKKVIGTEEAN 360

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+ ++  L     ++L+G  AFKL DT G PLD+ ++I   +GL  ID 
Sbjct: 361 FARTIDAGMNILNNMIDRLEKAHQKLLSGMDAFKLNDTFGFPLDLTKEIAAEQGLE-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+  +++Q+ RARA  L        +  F   E    T F GYD L            
Sbjct: 420 DGFHAEMKKQKERARAERLKKNISGWSEDLFGALEAE-PTVFTGYDTLTD---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQLGDT 531
                           V A+  +  + +   + ++    V VV D+TPFYAE GGQ  D 
Sbjct: 469 -------------KGTVVALSDEETLTDAIATDEEAKDGVLVVLDKTPFYAEMGGQAADH 515

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G    L++ DV+K  +G +VH  ++E GI++    L   +D   R  ++ NH+ATH
Sbjct: 516 GVLNGAECSLRVLDVKKTPKGYYVHTCVLESGIVKVGDVLTAQVDKGYRMAIARNHTATH 575

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG HV Q GS        FD TH   +T  EL  ++  VND I  ++ V  
Sbjct: 576 LLQAALREVLGDHVHQAGSYQDASITHFDFTHFSAVTPEELARVQKIVNDKIFDSMNVTV 635

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M  E+A   GA AL G KY   VRVV +E       S+  CGGTHV +T +I    IV
Sbjct: 636 QEMPVEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKIV 690

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKL 770
           SESS+ AGIRRIEA+TG+        Q+  L  +A+ LK +    +  R E +  E + +
Sbjct: 691 SESSVAAGIRRIEAVTGRNLLIRANLQEAMLHDVANTLKANNVAALPARAEAVMAENKAM 750

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                + K ++    +     +  +   V   S   +      L+ + D+++ K  + ++
Sbjct: 751 SRELEEMKAKIAASKVDSLFDNAEEADGVKIASAYFTGTTGDTLRGMCDSIRDKAVNPVV 810

Query: 826 MLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            ++    E K ++ + V +        A  L +  + + GG G GG+P  A +G  +  K
Sbjct: 811 AVLVGKAEDKITMAVTVNKLAQEKGLKAGVLVKELSAIAGGKG-GGKPDFAMAGLKDETK 869

Query: 885 ADQAIAGVASFLKK 898
            D+A+A V++ +KK
Sbjct: 870 IDEALASVSAIVKK 883


>gi|254557076|ref|YP_003063493.1| alanine-tRNA ligase [Lactobacillus plantarum JDM1]
 gi|254046003|gb|ACT62796.1| alanine-tRNA ligase [Lactobacillus plantarum JDM1]
          Length = 880

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/920 (35%), Positives = 489/920 (53%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + S IR  +L+FF + GH ++PS+SL+P +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLSSSEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPNN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVGRT RHHT FEMLGNFS G YFK+ AI  AW+LLT  K
Sbjct: 61  PRMTSSQKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D  +LY+TVY +D +A K W + +G+  D II++   DNFW + + GP GP SEIF
Sbjct: 117 WFGWDPDKLYMTVYPKDTDAAKFW-EATGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIF 172

Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE          E        RY+E+WN+VF QF    +     LP+ +IDTGMGLE
Sbjct: 173 YDRGEAFNNLADDDPENYPGGENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +V Q    N++ DLF  +I  +E+++  K       + V+ +VI DH R+ +F I+D
Sbjct: 233 RVVSVFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M S YP++++    IE
Sbjct: 293 GALPSNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + SE+ RF +TL+ GL LL+ +++   +   + L G  AFKLYDT+G P ++ ++   
Sbjct: 353 KIVASEESRFNETLNDGLNLLNNLIAETKQAGHDTLAGKDAFKLYDTYGFPFELTKEYAG 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              L  +D   F   ++ QR RAR       S   ++    L +    ++++GYD L   
Sbjct: 413 DEDL-DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSL--LIDIKTPSEYVGYDEL--- 466

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                V   +  I+    +V+   SGQ  E++F +TPFYAE GG
Sbjct: 467 -------------------TNVQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + D    +      + A      H +     +R + +  L +D     ++  
Sbjct: 507 QVADRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLKPMRKDATYTLNVDLAFHNKVEK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LG H  Q GS + PD LRFD TH   +T  EL  +E  VND I  
Sbjct: 567 NHTATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LPV     ++E     GA A+   KY   VRVVS+     G +S    GGTHV ++ E+
Sbjct: 627 ALPVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSEL 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IVSE+ I AG RRIEA+T + A   L G+++ LK +A+ +K  +  +   +V ++ 
Sbjct: 682 GLFKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + +  Q   A  + +L  +           +     ++  I      +L+ + D  + K
Sbjct: 742 ADLKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L  +  E K ++L+ V++D +     A DL +  A  +GGGG GGRP +AQ+G
Sbjct: 802 QYSDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVGGGG-GGRPTLAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G        A+     +L +
Sbjct: 860 GKKPAGLPAALKAAHEWLAE 879


>gi|319947816|ref|ZP_08022010.1| alanyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319438540|gb|EFV93466.1| alanyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 859

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/894 (35%), Positives = 469/894 (52%), Gaps = 57/894 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F + GH  +PS+SL+  +DP L+F N+GMVPFK  F GQE P Y   
Sbjct: 1   MQTHEIRRRFLDHFVRAGHTEVPSASLV-LDDPNLLFVNAGMVPFKPYFLGQETPPYATA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT      
Sbjct: 60  TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGDYFKEGAIRHAWSLLTSSLDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +D   L++TVY +D+EA+ +W+ + G+  ++I R    DN+WSM   GPCGPCSEIF
Sbjct: 116 GFGIDPALLWVTVYLDDDEAYGIWRDVIGVPEERIQRRGMADNYWSMGVPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+       + +    LPK +IDTGMG+
Sbjct: 176 YDRGPAY-GVDGGPEADEDRYIEIWNLVFMQNERGEGSGKDSFEILGPLPKQNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G KY  +  + V  RVI DH R++  LI+D
Sbjct: 235 ERVAFLLQGVENVYETDLLRPVIDTAERLSGAKYGADSASDVRFRVIADHARTAYMLISD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +   RLLG T   M   +  +   +G ++PE +     IE
Sbjct: 295 GVTPGNEGRGYILRRLLRRIVRSVRLLGATGETMAEFMATVRDAIGPSFPETVSGYERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL+ G  L +       +    +L+G  AF L+DTHG P+D+  ++  
Sbjct: 355 RIAVAEEAAFLKTLESGTQLFERAAESARRSGAAVLSGQQAFALHDTHGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + EQR+RA+A S        +   +      G T F G+  L   
Sbjct: 415 EAGL-QVDEEGFRSLMSEQRARAKADSQAKKHAHADLSVYRDFLDAGETVFTGFTDLTD- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  IV  G+ V  A  G +VE V D+TPFYAE+GG
Sbjct: 473 ----------------------ESRLLGIVSGGQAVPVAREGDEVEFVLDRTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           QLGD G     G ++++ DVQK  + +++H  ++  G +     +   +D + R+  +  
Sbjct: 511 QLGDRGMISTAGFQMRVDDVQKIGKKLWIHKGVLTGGEVEAGQIVTAAVDPEWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  ILG    Q GS   P  +RFD   S  I +  L  IE+  N  +  +
Sbjct: 571 HSATHLVHAALRQILGPEAVQAGSLNKPGYMRFDFNWSGSIPADVLAQIEEVTNSAVDAD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T     ++A   GA AL G  Y   VRVV +    GG  S  LCGGTHVSS+ +I 
Sbjct: 631 YGVNTIETTLDEAKRMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVSSSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ E+S+ +GIRR+EA  G  A  H   +   +  LA+ LK     +  R+  +  +
Sbjct: 687 PVSLLGEASVGSGIRRVEAYVGMDAYRHQARERALVSGLATSLKAPADELPDRIAALTAK 746

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+ +      +             S   +  V F++H      + +L+++   L+ ++ 
Sbjct: 747 LRETEKALESLRAAQLASQAGDLLASAEDLDGVRFLAHSAPGGAAGDLRTLASDLKGRLG 806

Query: 822 SGI-IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
           S   ++L+    + K   +I VT    +R   A DL +  +  L G  GGG+  
Sbjct: 807 SDAGVVLLTAPGQDKVPFVIAVTPAAQERGLRAGDLVKAISPAL-GARGGGKAD 859


>gi|213963758|ref|ZP_03392008.1| alanyl-tRNA synthetase [Capnocytophaga sputigena Capno]
 gi|213953638|gb|EEB64970.1| alanyl-tRNA synthetase [Capnocytophaga sputigena Capno]
          Length = 877

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/925 (35%), Positives = 478/925 (51%), Gaps = 78/925 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP ++ V
Sbjct: 1   MTSQEIRNLFLKFFESKGHTIVPSAPMVIKNDPTLMFTNAGMNQFKEFFLGHAKPKHKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAISWAWELLTEIYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++         D+EAF +WK+   ++ D I+     DNFW M + GPCGPC+
Sbjct: 121 KENLYVTVFEGSEEDGVPFDQEAFDIWKER--IAEDHILLGNKKDNFWEMGDQGPCGPCT 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + IEIWN VFM+F ++       LP  ++DTGMG
Sbjct: 179 EIHVDIRSDEEKAKVAGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
            ER+  VLQ K +NYD D+F  LI   E++T   Y         +    +  RVI DH+R
Sbjct: 239 FERLCMVLQNKQSNYDTDVFTPLIHKVEEITKSHYNSNGRVTPEQEQVNIAIRVISDHIR 298

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +F IADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG+ +PE
Sbjct: 299 AVAFAIADGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLAAQMGATFPE 358

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L + + LI   ++ E+  F +TL++GL++LD ++ +    + L+G  AF+LYDT+G P D
Sbjct: 359 LEKQQFLIMSVIKEEEASFLRTLEQGLLMLDVMIQNSPDKQ-LSGGKAFELYDTYGFPKD 417

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   IL  +GL  +D   F   L++Q+ R+RA      +      W  L++     +FIG
Sbjct: 418 LTALILSEKGLT-MDEEGFEVQLQKQKERSRAA-----AQVKTDDWVVLRDDDEE-EFIG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L     + + R+                           VE    G   ++VF+ TP
Sbjct: 471 YDTLEAVVRLVKYRR---------------------------VESQKDGTHFQLVFNTTP 503

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ+GD G        L      KK   + +H A  E             +    
Sbjct: 504 FYPEGGGQVGDKGTLQAANGELIYILDTKKENNLIIHIA--EHLPTELNDPFKAEVHLVA 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R     NHSATHLLH AL  +LG+HV Q GS + P+ LRFD +H   +TS ELK +E  V
Sbjct: 562 REMAEANHSATHLLHQALREVLGTHVEQKGSRVAPEALRFDFSHFAKLTSDELKEVERLV 621

Query: 640 NDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I + +P+   R +  + A+ SGA AL G KY DRVR++          S  LCGGTH
Sbjct: 622 NKRIFEKIPLQEHRNIPIQQAVESGAMALFGEKYGDRVRMIQFGD------SKELCGGTH 675

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG+I    I+SE ++ AGIRRIEAIT   A  + + Q++ ++ +   +K +Q  V  
Sbjct: 676 VKNTGDIWFFKIISEGAVAAGIRRIEAITRGGAMQYFIEQEQLVERIKETVKNTQDPV-K 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVM 813
            +  + EE   L     + K +   +          +I  +  +   + + +   LK + 
Sbjct: 735 AITHLQEENAALHRELEQLKKEQAKQLKANLKAEFTEINAIQCLIKQV-DAEVATLKDLA 793

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGR 871
             L  +++   +      +E KA +L  + ++L      +A  + R   K + GGG GG+
Sbjct: 794 FELGNEVKDAFVFFASAHEEGKALLLCYINKELAQAKGLDAGKIVRELGKYIHGGG-GGQ 852

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P  A +GG       +A+  V  FL
Sbjct: 853 PFFATAGGKKPEGIAEALFKVKDFL 877


>gi|29840633|ref|NP_829739.1| alanyl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|33301683|sp|Q821R2|SYA_CHLCV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29834983|gb|AAP05617.1| alanyl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 875

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/897 (37%), Positives = 496/897 (55%), Gaps = 48/897 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H ++PSS + P NDP+++FTN+GM  FK+IF  +E   Y   
Sbjct: 1   MLSNTLRSNFLKFYANRHHTIVPSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI  AW++    F+LD
Sbjct: 61  TTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+Y TV+++D+EAF LW+K   L +++I R+T  DNFWSMAETGPCG CSE+ FD+GE
Sbjct: 121 PDRIYATVHEKDDEAFALWEK--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGE 178

Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    EGER++E WNLVFM+F +  +     LP   +DTG GLER+ ++L   
Sbjct: 179 KFGTAASPLEDTEGERFLEYWNLVFMEFNRTAEGSLLALPNKHVDTGAGLERLVSILSGT 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ + LI  +EQ++G  Y  +       RVI DH RS SF IADG+LP N  RG
Sbjct: 239 NTVFEADVLRLLISKTEQLSGKTYHADEALGAAFRVIADHTRSLSFAIADGLLPGNTERG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RRA+ Y + LG+T+P +  ++P+L   MG AYPEL  +   I+E +  E+E +
Sbjct: 299 YVLRKILRRAVNYGKRLGFTQPFLADIVPSLVDTMGEAYPELRLSLSQIQEVMTMEEENY 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            K+L RG  LL  VL       I++G+ AFKL DT+GLPLD +  +        +D+ +F
Sbjct: 359 FKSLHRGGNLLQQVLKSSSSSSIISGEDAFKLKDTYGLPLDEIALLAKDYDFT-VDMETF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            Q  EE + R+R +     S +T+ ++ SL      ++F+GY+ L    F          
Sbjct: 418 YQLEEEAKERSRKNIAKSHS-STDTVYDSLS-LGENSEFVGYNDLSCDTF---------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++A+V  G+ V      +K  ++   TPFYAE GGQ+GD+G      
Sbjct: 466 -------------IEALVSNGKQVSSLKEKEKGALILKVTPFYAEKGGQIGDSGEIFCSD 512

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       GI +HH  V +G L  + ++   ++   R+++  NH+  HLLH AL 
Sbjct: 513 GTFIVSHTTSPKAGIVIHHGEVSQGQLSQDQAVTAQVNCIRRKKIGNNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI-MNRE 657
             LG H+ Q GS +    +R D TH K I   +L SIE  VN+ I +N  V TR  M  +
Sbjct: 573 VTLGDHIRQAGSYVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREAMYSD 632

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
              +       G KY+D VRVVS         S  LCGGTH   TG++    I+ E ++ 
Sbjct: 633 VMNSKEIKQFFGDKYSDVVRVVSAG------FSHELCGGTHAEFTGDLGYFRILKEHAVA 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEA+TG+ A +     +E L  +A  L+  +  ++ +++ + EE ++     ++ 
Sbjct: 687 TGIRRIEAVTGREAEALAHQDNENLNEIALVLQSPRDQILNKLQNVLEERKEQAKQISEL 746

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L    L        ++ DV+++ H + E +S  L+   + L +KI   +I L    K
Sbjct: 747 ENKLIHSLLDKLIDGCQQVDDVSYLIHHLPESESHRLQQYANCLHQKIPLRLISLWTTQK 806

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             K  +   +++DL+     A DL ++      GG  GG+   AQ      +   QA
Sbjct: 807 NGKYIIFSRISDDLVKQGLQAKDLLKIVLTPC-GGRWGGKDIFAQGS---ADNLPQA 859


>gi|159476100|ref|XP_001696152.1| hypothetical protein CHLREDRAFT_119554 [Chlamydomonas reinhardtii]
 gi|158275323|gb|EDP01101.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 879

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/914 (36%), Positives = 478/914 (52%), Gaps = 55/914 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL F++  GH  LPSSSL+P  DPT++ T +GM+ FK +F GQ        T
Sbjct: 1   TGAEIREAFLSFYESKGHTRLPSSSLVPE-DPTVLLTIAGMLQFKPVFLGQAPRKVATAT 59

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND+ NVG T RHHTFFEMLGNFSFG YFKE+AI+ AW+L T  F L  
Sbjct: 60  TTQKCVRT----NDIGNVGVTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTGVFGLPA 115

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R++++VY+ED EA  +W+ + G++ ++I R+   DNFWS   TGPCGPCSE+++D    
Sbjct: 116 ERVWVSVYEEDAEAEAIWRDVVGVAPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHPE 175

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G    S E+  R+IE +NLVFMQ  +        L   +IDTGMGLERMA +LQ  +N
Sbjct: 176 -RGTQDASLEDDSRFIEFYNLVFMQLNRCPDGSLEPLAAKNIDTGMGLERMAQILQGVSN 234

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   ++  +  + G+ Y   +       +VI DH R+ +++++DG+ P+N GRGY
Sbjct: 235 NYETDLIFPIVAKAAAIAGVDYASAQPAVKTALKVIGDHTRAVTYMLSDGVTPSNTGRGY 294

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR +   RLLG  E     +         +  P + +    I + L  E+  F 
Sbjct: 295 VLRRLLRRVVMKGRLLGIREVFTPAVAEVAVALSAACDPAVQRNAQRIYDELAREESLFA 354

Query: 360 KTLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            TL+RG   LD  L       + + G  AF LYDT G PL++ Q++  ARG   +D+  F
Sbjct: 355 TTLERGQKQLDEYLDRAAAGGKAIAGPDAFMLYDTFGFPLELTQELAEARG-VDVDVSGF 413

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              +E QR R++     L       +  +L    G T F GY   RG+            
Sbjct: 414 EAEMEAQRQRSKDSRETLDLTAQAGL-AALAAAVGPTAFTGYSATRGA------------ 460

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD- 537
                        V+ +++ G  VE   +G + EV+ D TPFYAE+GGQ+GD G      
Sbjct: 461 -----------GRVRGLMRGGAPVEVVEAGDRCEVLLDSTPFYAESGGQVGDMGVLTAHG 509

Query: 538 ----GIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  L ++D QK     +FVH   V+ G LR    +   +D   RR++  +H+ATHL
Sbjct: 510 SGEAAAELSVSDCQKAAGGSVFVHTCEVKAGQLRVGDQVTALVDEDLRRRVRAHHTATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG    Q GS      LRFD   ++ +T+AE+  +E  VN  +A   P+ TR
Sbjct: 570 LQSALKAVLGPDTCQQGSLCNFQRLRFDFNLARGMTAAEVAEVERLVNGWVAAAAPLETR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+   A A+GA A+ G KY+D VRVV V        S  LCGGTHV++T EI    I+S
Sbjct: 630 VMDLAAAKAAGATAMFGEKYDDTVRVVDVPG-----ISMELCGGTHVANTAEIGAFKILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I +GIRR+EA+ G  A  +L   D  ++ L+  LK+    V  RV  +  E R+   
Sbjct: 685 ESGIASGIRRVEAVAGPAAVEYLNQVDGLVRGLSGQLKLKPEEVPARVSAMQAELREAAK 744

Query: 773 IHAKRKLQLNVEDLSC---HKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             A  K QL V          +         ++ +   V++K L+     LQ+ +     
Sbjct: 745 QLADLKAQLAVAQSQALVSQAVTAPQGGKVLVAELAGGVEAKALQEAAVKLQEALGDPAA 804

Query: 826 MLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +++    + K + +   +   +     A  L    AKV GGGG GG+P +AQ+GG + +K
Sbjct: 805 VVLASRVDDKVNFVAAFSAGAVKAGVQAGKLVGAVAKVCGGGG-GGKPALAQAGGKDASK 863

Query: 885 ADQAIAGVASFLKK 898
             +A+A  +  L +
Sbjct: 864 TSEALALASKMLNE 877


>gi|309803595|ref|ZP_07697687.1| alanine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|309809661|ref|ZP_07703517.1| alanine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|312875207|ref|ZP_07735220.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|308164343|gb|EFO66598.1| alanine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|308170021|gb|EFO72058.1| alanine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|311089314|gb|EFQ47745.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
          Length = 877

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/917 (35%), Positives = 499/917 (54%), Gaps = 61/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLGLDPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288
           R+ +V+Q+   N++ DLF  +I+ +E+++  K       + V  ++I DH+R+ SF IAD
Sbjct: 234 RVVSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIAD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E
Sbjct: 294 GALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RF +TL  GL LLD ++  +   K   L+G  AFKL+DT+G P ++  +   
Sbjct: 354 KVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQ 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  Y  L+  
Sbjct: 414 DAGL-AVDKEEFDAEMKAQKDRARKARGNLQSMGSQDI--TLMNIKDESVFE-YHQLQED 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V++   G++  ++FD+TPFYAE GG
Sbjct: 470 H----------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G        L    +  + A      H +     ++     VL +D Q RR L  
Sbjct: 507 QVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGEEYVLKVDEQRRRGLKH 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I  
Sbjct: 567 NHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I
Sbjct: 627 EIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + 
Sbjct: 682 GMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALE 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  R+ Q    + K Q+N    S        I  +  ++ I+      +L+ + D  + +
Sbjct: 742 DALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L      K   ++ +  + +     A DL +++A + GGGG GGRP+MAQ+GG
Sbjct: 802 NLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGG-GGRPNMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N     +A+  V + L
Sbjct: 861 KNPAGLAKALETVLNEL 877


>gi|323436121|ref|ZP_01050628.2| Alanyl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|321496436|gb|EAQ38546.2| Alanyl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 870

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/918 (36%), Positives = 485/918 (52%), Gaps = 72/918 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  FLEFF+   H ++ S+ ++  +DPTLMFTN+GMVPFK  F G   P    +
Sbjct: 1   MKSQEVRKQFLEFFKSKNHSIVASAPMVLKDDPTLMFTNAGMVPFKEYFLGNATPKNSRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFKE AI  AW+ LT+   +D
Sbjct: 61  TDTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAIAWAWEFLTEVVKVD 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  +Y+++++ DE        EA+ +W K   +   +II     DNFW M   GPCGPCS
Sbjct: 121 KDSIYVSIFEGDESEGLERDQEAYDIWTK--HIDESRIINGNKKDNFWEMGAQGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +    IEIWNLVFMQ+ +        LP   +DTGMG
Sbjct: 179 EIHVDIRSAEEKAAVDGKSLVNMDHPLVIEIWNLVFMQYNRLANGSLTKLPNQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIA 287
            ER+  VLQ   +NYD D+F  L++  E +T  K        +  RVI DH+R+ SF IA
Sbjct: 239 FERLCMVLQGVQSNYDTDVFTPLMREVETITSSKCGETEETDIAVRVIADHVRAVSFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K L
Sbjct: 299 DGQLPSNTGAGYVIRRILRRAIRYGFTFLDTKEPFIYKLVSTLVNQMGDAFPELEAQKNL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           I   +R E+  F +TLD+GL+LLD V+++    + ++GD AF+LYDT+G P+D+   IL 
Sbjct: 359 ITNVIREEEASFLRTLDKGLILLDNVIANTS-GDTVSGDKAFELYDTYGFPIDLTALILS 417

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            + L  +D   F  AL+EQ+ R+RA +        E   +++ ++    +FIGYD L  S
Sbjct: 418 EKNLK-LDEAGFEAALKEQKDRSRAATK------VETDDWNILQEDSEEEFIGYDTLEAS 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   RK                            E    G+  ++VF+ TPFY E GG
Sbjct: 471 IKITRYRKT---------------------------ESKKDGELYQLVFNLTPFYPEGGG 503

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G        +      KK   + +H A  +     TE +    +D + R + + N
Sbjct: 504 QVGDKGYLETPSGEVVYIIDTKKENNLIIHLA--KNLPRSTEGTFKAVVDVKQRSRTAAN 561

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH  L  ILG+HV Q GS +    LRFD +H   +TS ELK +ED VN  I +N
Sbjct: 562 HTATHLLHQGLRKILGTHVEQKGSMVHSRNLRFDFSHFSKVTSEELKEVEDFVNARIREN 621

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           L +   R +  + AI  GA AL G KY D VR +          S  LCGGTHV +TG+I
Sbjct: 622 LSLEEQRGIPYDQAIQEGAIALFGEKYGDAVRTIRFG------KSMELCGGTHVKNTGDI 675

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I SE ++ +GIRRIEAIT   A+ +   + E    + + LK +Q  V   +  + +
Sbjct: 676 WHFKITSEGAVASGIRRIEAITSDAAKDYFTSETEAYNQVKATLKGNQDPV-KAITSLLD 734

Query: 766 EYRKLQLIHA---KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E   L+       K K Q    DL+     I  V+F++  + ++D+  +K++   L  + 
Sbjct: 735 ENAALKKQVEALIKEKAQNLSGDLAKEFEDIDGVDFLAKKV-DLDAGAIKNLAFKL-GEN 792

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +  + +L G  +  KA +   ++++L+     NA  + R   K + GGG GG+P  A +G
Sbjct: 793 KDNVFLLFGTEQNGKALLSCYISKELVASKNLNAGTVVRELGKHIQGGG-GGQPFFATAG 851

Query: 879 GPNGNKADQAIAGVASFL 896
           G N    D AIA V ++L
Sbjct: 852 GKNPAGIDAAIAEVKNYL 869


>gi|290953862|ref|ZP_06558483.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312765|ref|ZP_06803502.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
          Length = 804

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/838 (41%), Positives = 495/838 (59%), Gaps = 45/838 (5%)

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L  
Sbjct: 2   TVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKLPV 61

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D GE 
Sbjct: 62  EKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHGED 121

Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ   
Sbjct: 122 VAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQNVH 181

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGYVL
Sbjct: 182 SNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGYVL 239

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F KT
Sbjct: 240 RRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFLKT 299

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           ++ G+ + D  + +L  D  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F   
Sbjct: 300 IENGIKIFDAEIENLK-DNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFLAQ 357

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++ Q+ R++        G     + SL      ++F GY  L                  
Sbjct: 358 MQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL------------------ 393

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G   
Sbjct: 394 -----IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGFEF 448

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            + DVQK  E   +H   + +G L     L   +  + R   + NHSATHLL+ AL  +L
Sbjct: 449 VVEDVQKSGE-AILHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKLVL 507

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A +
Sbjct: 508 GGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKAKS 567

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G+R
Sbjct: 568 LGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASGVR 622

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K +L
Sbjct: 623 RIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKKEL 682

Query: 782 ---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
              +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K   
Sbjct: 683 LSGSSNDIKETSIGDIKIVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKVQF 741

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 742 VIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 798


>gi|254993607|ref|ZP_05275797.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-064]
          Length = 826

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/865 (38%), Positives = 483/865 (55%), Gaps = 56/865 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++I+ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEQV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+
Sbjct: 508 ADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + 
Sbjct: 568 ATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L 
Sbjct: 628 VVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R
Sbjct: 683 KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQADLR 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD 848
           I++L  +  + K +++  V+E+ + 
Sbjct: 803 ILVLGAVQGD-KVNLISAVSEEAIK 826


>gi|300778975|ref|ZP_07088833.1| alanine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300504485|gb|EFK35625.1| alanine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 867

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/918 (33%), Positives = 481/918 (52%), Gaps = 75/918 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL++F+   H ++PS+ ++  +DPTLMF+NSGM  FK+ F G + P    +
Sbjct: 1   MTSQEIRQKFLDYFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDFFLGYKTPTAPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD+VGR   HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGDYFKKEAIAFAWELLTEVYGIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+T+++         D+ A+  WK    +S D+II     DNFW M E+GPCGPCS
Sbjct: 121 KENLYVTIFEGDASENLDRDQNAYDFWKS--HISEDRIINGNKKDNFWEMGESGPCGPCS 178

Query: 174 EIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D +       +PG    +++  + +E+WNLVFM+F ++  +    LP   +DTGMG
Sbjct: 179 EIHIDLRTPEEKAAVPGISLVNKDHPQVVEVWNLVFMEFNRKADKSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE----GNNIVNHRVIVDHLRSSSFL 285
            ER+   LQ K++NYD D+F  LI   E+++G KY         +  RV+VDH+R+ SF 
Sbjct: 239 FERLCMALQGKSSNYDTDVFTPLIAKVEELSGKKYTGILEDEKDIAIRVVVDHIRAVSFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP++ G GYV+RRI+RR + Y+   LG  EP +  L+  L  +MG  +PE+ +  
Sbjct: 299 IADGQLPSSGGAGYVIRRILRRGISYSYRFLGMKEPFLYKLVAVLQEQMGPFFPEIEKQG 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            L+ E ++SE++ F  T++ GL+ ++ ++        ++L     F+LYDT+G P D+ +
Sbjct: 359 KLVTEVIKSEEDSFLNTIETGLIRVEKLIQQTIADNQKVLPTLEVFELYDTYGFPDDLTR 418

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            I   +GL  ID   F    E+QR R++         + +K++  +  +     F+GYD 
Sbjct: 419 IIAEEKGLT-IDEEGFKAEREKQRKRSQQD-------SAQKVYDWVVLEEKPESFVGYDQ 470

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           +    ++   RKV                            E   G+  +VV   +PFY 
Sbjct: 471 IESETYITRYRKV----------------------------ENKDGEFYQVVLSSSPFYP 502

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GD G         Q+ + +K+   I                     ++   R+ 
Sbjct: 503 EGGGQVGDKGVLENAAESFQVLETKKENGLIISLI---NGLPKDAGALFYAKVNASERKN 559

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS THLLH AL  +LG+HV Q GS + PD LRFD +H   +T  E+  IE+ VN  
Sbjct: 560 SQANHSVTHLLHEALRDVLGTHVEQKGSYVGPDYLRFDFSHFNKMTEEEIALIEEKVNHK 619

Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +++ +   R +  ++A+  GA AL G KY D VR++          S  LCGGTHV +
Sbjct: 620 IKESIALQEFRSIPIQEALDKGAMALFGEKYGDNVRMIQFGS------SKELCGGTHVKN 673

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI    I SE S  AGIRRIEAI+G ++  +    ++++  L+  LK    +VV  +E
Sbjct: 674 TSEIGHFKITSEGSAAAGIRRIEAISGDKSEEYFKNLEKQITELSQLLKSK--DVVRSIE 731

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL----SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           ++ EE   L+      K +    ++    + ++      +    + +D+  +K ++  L+
Sbjct: 732 KLIEENTSLKAEVDALKKEKAKGEIGEWKNAYEQKGNKQLLVKKTSLDAGSVKDIVFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           ++I S + +++    + K  + + V++DL   + A  + +  AK + GGG GG P  A +
Sbjct: 792 REIPSSVTIILS-DADGKPMITVGVSDDLAADYQAGAIVKDLAKEIQGGG-GGNPGFATA 849

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N    + A     + 
Sbjct: 850 GGKNLEGLENAYQKALNI 867


>gi|295101950|emb|CBK99495.1| alanyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6]
          Length = 886

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/914 (35%), Positives = 493/914 (53%), Gaps = 55/914 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L FF+  GH  L S  L+P NDP+L+  NSGM P K  F  QE+P    VTT
Sbjct: 6   LNELRDKYLTFFEGKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKC+R      D++ VG T RH TFFEMLGNFSF  YFK+  I  AW+ LT  +   + 
Sbjct: 66  CQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKKEVIPWAWEFLTSDEWMAIP 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+I+VY ED+EA+ +W K  G++ D ++R+   DNFW    +GPCGPCSEI+FD+G 
Sbjct: 122 KDRLHISVYKEDDEAYDIWTKKVGVAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDRGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWNLVF QF+   K     L + +IDTGMGLER+A V+Q 
Sbjct: 181 EYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D  + ++   E + G  Y  +    ++ RVI DH+RS +F+++DGILP+NEGR
Sbjct: 241 VGNLFEVDTVQSVLHHVEHIAGKTYGADPKEDISIRVITDHIRSCTFMVSDGILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG + P ++ L+  +     SAYPEL +    I++ + +E+  
Sbjct: 301 GYVLRRLLRRAARHGRMLGISRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEEAN 360

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+ ++  L    + +L G   FKL DT G PLD+ ++I   +G   ID 
Sbjct: 361 FARTIDAGMNILNNMIDGLEKAHEHLLKGLDVFKLNDTFGFPLDLTKEIAAEQG-IEIDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+  + +Q+ RARA  L        +  F        T+F+GYD L+           
Sbjct: 420 EGFHAEMTKQKERARAERLKKNISGWSEDLFGTL-TAEPTEFVGYDTLKSD--------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQLGDT 531
                         S+V A+  +  + +   + ++    V VV D+TPFYAE GGQ  D 
Sbjct: 470 --------------SVVVALSDEETLTDAIATDEQAKEGVLVVLDKTPFYAEMGGQAADH 515

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G    L++ DV+K  +G +VH   +E GI+     L   +D + R  ++ NH+ATH
Sbjct: 516 GVITGAECVLRVQDVKKTPKGYYVHTCTLESGIVHVGDHLTARVDKEYRMAIARNHTATH 575

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG HV Q GS        FD TH   +T  EL  ++  VND I +++ V  
Sbjct: 576 LLQAALREVLGDHVHQAGSYQDASITHFDFTHFSAVTPEELVRVQKIVNDKIFESMNVTV 635

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M  E+A   GA AL G KY   VRVV +E       S+  CGGTHV +T +I    IV
Sbjct: 636 KEMPVEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKIV 690

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKL 770
           SESS+ AGIRRIEA+TG+        Q+  L ++A+ LK +    +  R E +  E + +
Sbjct: 691 SESSVAAGIRRIEAVTGRNLLIRANMQEAMLHAVANTLKANNVAALPARAEAVMAENKAM 750

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                  K ++    +     +   + DV   S   +      L+ + D ++   ++  +
Sbjct: 751 SKELEDIKAKVAASKVTSLFDNAETVGDVKIASAYFTGTSGDTLRGMCDTIRDNAKAAAV 810

Query: 826 MLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            ++    + K ++ + VT+D       A +L +  + + GG G GG+P  A +G  +  K
Sbjct: 811 AVLVGKSDDKITMAVTVTKDAQAKGLKAGNLVKEISAIAGGKG-GGKPDFAMAGLKDETK 869

Query: 885 ADQAIAGVASFLKK 898
            D+A+A V   ++K
Sbjct: 870 IDEALAAVKGIVEK 883


>gi|240170724|ref|ZP_04749383.1| alanyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 904

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/933 (34%), Positives = 478/933 (51%), Gaps = 74/933 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWSLLTNGVAAG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ TVY +D+EA  LW+ ++GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERLWATVYLDDDEAAGLWQDVAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G    P G P  +E+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPDYGPEGGPIVNED--RYLEVWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286
           +ER+A VLQ+  N Y+ DL + ++ A   V    Y      + V +R+I DH R+++ LI
Sbjct: 234 VERVALVLQDVHNVYETDLLRPVVDAVALVAARPYDAGNHADDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  A+LL    P++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVSPGNDGRGYVLRRLLRRVIRSAKLLNIDTPIVGDLMATVRDAMGPSYPELVSDFDR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L D V   +      +++G  AF L+DT+G P+++  ++
Sbjct: 354 INRIAVAEETAFNRTLASGSRLFDEVAGTTKAKGATVVSGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F + + EQR RA+A +       T+   +      G T+F G+D L 
Sbjct: 414 AAESGLR-VDEAGFRELMAEQRRRAKADAAARKHAHTDLTAYRELVDAGPTEFTGFDELA 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE--------EAVSGQKVEVVFD 516
                                    + +  I   G+ V         +A +G +VE+V D
Sbjct: 473 S-----------------------EARILGIFVDGKRVPVVAHGSEGQAANGDRVELVLD 509

Query: 517 QTPFYAEAGGQLGDT----GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +TP YAE+GGQ+ D     G   G   R  +TDVQK A+ ++VH   VE G      +++
Sbjct: 510 RTPLYAESGGQIADEGTISGTGSGGSARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVI 569

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD +   P+T  + 
Sbjct: 570 AAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFSWQGPLTEDQR 629

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE+  N+ +  +  V T     E A A GA AL G  Y D VRVV +    GG  S  
Sbjct: 630 THIEEVTNEAVQADFEVHTFTEQLEKAKAMGAMALFGESYPDEVRVVEI----GGPFSLE 685

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV S+ +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV 
Sbjct: 686 LCGGTHVESSAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVP 745

Query: 753 QGNVVGRVEEIWEEYRKLQLIHA-----KRKLQLNVEDLSCHKIADVNFMSHIIS-EVDS 806
              V  RV  + +  +  +           +           +I +V  ++  IS  + S
Sbjct: 746 SDEVPTRVANLVDRLKAAEKELERVRLANARAAAVNAAAGAERIGNVRVVAQRISGGITS 805

Query: 807 KELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVL 863
            +L+S++  ++ ++ S   +I L+   +       +       D    A +L +  A  +
Sbjct: 806 ADLRSLVGDIRGRLGSDPAVIALIAEGENDSVPYAVAANPAAQDLGIRANELIKPLAAAV 865

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG+  +AQ  G      D A+  V S +
Sbjct: 866 -DGRGGGKADLAQGSGKKPAGIDAALDAVRSEI 897


>gi|28378871|ref|NP_785763.1| alanine--tRNA ligase [Lactobacillus plantarum WCFS1]
 gi|38258328|sp|Q88V10|SYA_LACPL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28271708|emb|CAD64614.1| alanine--tRNA ligase [Lactobacillus plantarum WCFS1]
          Length = 880

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/920 (35%), Positives = 489/920 (53%), Gaps = 63/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + S IR  +L+FF + GH ++PS+SL+P +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLSSSEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVGRT RHHT FEMLGNFS G YFK+ AI  AW+LLT  K
Sbjct: 61  PRMTSSQKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D  +LY+TVY +D +A K W + +G+  D II++   DNFW + + GP GP SEIF
Sbjct: 117 WFGWDPDKLYMTVYPKDTDAAKFW-EATGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIF 172

Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE          E        RY+E+WN+VF QF    +     LP+ +IDTGMGLE
Sbjct: 173 YDRGEAFNNLADDDPENYPGGENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ +V Q    N++ DLF  +I  +E+++  K       + V+ +VI DH R+ +F I+D
Sbjct: 233 RVVSVFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M S YP++++    IE
Sbjct: 293 GALPSNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + SE+ RF +TL+ GL LL+ +++   +   + L G  AFKLYDT+G P ++ ++   
Sbjct: 353 KIVASEESRFNETLNDGLNLLNNLIAETKQTGHDTLAGKDAFKLYDTYGFPFELTKEYAG 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              L  +D   F   ++ QR RAR       S   ++    L +    ++++GYD L   
Sbjct: 413 DEDL-DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSL--LIDIKTPSEYVGYDEL--- 466

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                V   +  I+    +V+   SGQ  E++F +TPFYAE GG
Sbjct: 467 -------------------TNVQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + D    +      + A      H +     +R + +  L +D     ++  
Sbjct: 507 QVADRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLKPMRKDATYTLNVDLAFHNKVEK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LG H  Q GS + PD LRFD TH   +T  EL  +E  VND I  
Sbjct: 567 NHTATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LPV     ++E     GA A+   KY   VRVVS+     G +S    GGTHV ++ E+
Sbjct: 627 ALPVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSEL 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IVSE+ I AG RRIEA+T + A   L G+++ LK +A+ +K  +  +   +V ++ 
Sbjct: 682 GLFKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + +  Q   A  + +L  +           +     ++  I      +L+ + D  + K
Sbjct: 742 ADLKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L  +  E K ++L+ V++D +     A DL +  A  +GGGG GGRP +AQ+G
Sbjct: 802 QYSDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVGGGG-GGRPTLAQAG 859

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G        A+     +L +
Sbjct: 860 GKKPAGLPVALKAAHEWLAE 879


>gi|126663290|ref|ZP_01734288.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Flavobacteria
           bacterium BAL38]
 gi|126624948|gb|EAZ95638.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Flavobacteria
           bacterium BAL38]
          Length = 878

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/928 (35%), Positives = 489/928 (52%), Gaps = 82/928 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+ NGH ++PS+ ++  +DPTLMF NSGM  FK  F G   P    +
Sbjct: 1   MKSQDIRKQFLQFFESNGHLIVPSAPIVLKDDPTLMFNNSGMAQFKEYFLGNGNPKSPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL++VG    HHT FEMLGN+SFG YFK+ AI  AW LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAINWAWQLLTEVYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY++V++         D+EA+ +WK++  +S D+II     DNFW M + GPCGPCS
Sbjct: 121 KENLYVSVFEGNPDENVPFDQEAWDIWKEL--ISEDRIILGNKKDNFWEMGDQGPCGPCS 178

Query: 174 EIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D      + +  G    + +  + +EIWN VFM+F ++       LP   +DTGMG
Sbjct: 179 EIHVDLRTEAEKALVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDH 278
            ER+   LQ KT+NYD D+F  LI+  EQ+TG+KY  N + N            RVIVDH
Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIEKVEQITGLKYTSNEVKNISEEQNKTNIAIRVIVDH 298

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
           +R+ +F IADG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L+  L  +MG  +
Sbjct: 299 VRAVAFAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLGTKEPFINKLVEVLANQMGEFF 358

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+   + L+   +R E+  F +TL++GL LL+ V++     E+ +G  AF+LYDT G P
Sbjct: 359 PEIKSQQQLVTNVIREEEASFLRTLEQGLQLLENVMAETSGKEV-SGAKAFELYDTFGFP 417

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   IL  +G   +D   FN A++EQ++R+RA      S  + + W  L      T F
Sbjct: 418 IDLTALILREKGY-DLDEAGFNVAMQEQKARSRAA-----SEVSTEDWNVLIPGNVET-F 470

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GYD       +   RK                           V+    G   ++V D 
Sbjct: 471 VGYDQTANEVKITRIRK---------------------------VDSKKDGVLYQIVLDN 503

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFY E GGQ+GD G  +     + I D +K+   I       ++     E   V  ++ 
Sbjct: 504 TPFYPEGGGQVGDKGTLVSANETIDIIDTKKENNLILH---FAKQLPENIEAGFVAKVNT 560

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R   S NHSATHL+H AL TILG+HV Q GS + P+ LRFD +H   ++  EL+ +E 
Sbjct: 561 DLRTSTSKNHSATHLMHLALRTILGTHVEQKGSLVNPNYLRFDFSHFSKVSDDELRQVEA 620

Query: 638 NVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +VN  I   L +V  R +  ++A+  GA AL G KY D VR++          S  LCGG
Sbjct: 621 SVNAQIEAQLQLVEHRNIPIKEALDKGAMALFGEKYGDNVRMIEFGD------SKELCGG 674

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HV +T EI    I+SE ++ AGIRRIEAITG   +     Q+  L  +   LK +  +V
Sbjct: 675 IHVKNTAEIWHFKIISEGAVAAGIRRIEAITGDAVKDFYTSQENTLAEIKEVLK-NPQDV 733

Query: 757 VGRVEEIWEEYRKLQLIHAKR---KLQLNVEDLSC--HKIADVNFMSHIISEVDSKELKS 811
           +  V  + ++  KL+    +    K++     L     ++  ++F++  + ++     K 
Sbjct: 734 LKSVASLQDDNAKLKKQVEQLVKEKIEGLKNSLVADFQEVNGIHFLAKQV-DLSMSSTKD 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGG 869
           +  A+     +  + L  I ++   ++   ++++L+     NA ++ R   K++  G GG
Sbjct: 793 LAQAIGTSKPNAFVFLASI-EDNAPNIHCYISKELVAEKGLNAGNVIRELGKLI-DGNGG 850

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G+P  A   G N     +A+  V  F+K
Sbjct: 851 GQPFFASGKGKNVGGIKEALEKVVDFVK 878


>gi|116074098|ref|ZP_01471360.1| alanyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116069403|gb|EAU75155.1| alanyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 892

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/912 (37%), Positives = 505/912 (55%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF+  GH+   S+SL+P  DPT++ T +GM+PFK IF GQ++      T
Sbjct: 16  SGAEIRAAFLDFFEARGHKRTASASLVPE-DPTVLLTIAGMLPFKPIFLGQQERPAPCAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T  F LD 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTGVFGLDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KNLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 191 L-GDDGIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQQVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI+ +  + G+ Y+  +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDLIYPLIETAAGLAGVDYKALDEKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P +  +  A    M  AYP+L++ K +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGIAKPFLTVMGEASIALMQEAYPQLLERKEVILAELKREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+       + G  AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 370 ETLERGEKLLADVLAAKPAQ--IAGAQAFELYDTYGFPLELTQEIAEEHGLT-VDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+EEQR RA+A ++ +     + I   +  +  AT F GYDLL                
Sbjct: 427 AAMEEQRQRAKAAAVSIDLTLQDAID-QVAAELEATSFRGYDLLEH-------------- 471

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537
                    SS V+A+V  GE  ++A +G  V+VV D TPFY E GGQ+GD G  +GD  
Sbjct: 472 ---------SSSVQALVVNGEPAQQAGAGDAVQVVLDTTPFYGEGGGQVGDRGVLVGDGP 522

Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                + + +   +   +FVH   VERG L     +   +D   RR+   NH+ATHLL  
Sbjct: 523 DGNGLIVVIEGVSRNRSVFVHSGRVERGSLSIGDVVHGQVDKACRRRAQANHTATHLLQA 582

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++   + Q GS +  + LRFD    + + + EL+ IE  +N  I++   +  + M 
Sbjct: 583 ALKQVVDPGIGQAGSLVDFERLRFDFHCPRAVKADELEQIEALINGWISEAHSLEVQEMA 642

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV+ES 
Sbjct: 643 IEQAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESG 697

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G    ++L  +D  +K L    K     +V RV  + +E +      A
Sbjct: 698 VAAGIRRIEAVAGGAVLAYLNERDLVVKQLGDRFKAQPAEIVERVLALQDELKSTGKALA 757

Query: 776 KRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L V   +        + ++  +   +  VD   L+    +L  ++  G  +++G 
Sbjct: 758 AAQAELAVAKSAALASKAVAVGELQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGG 817

Query: 831 SKE----KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             +     K  ++    + ++     A       AK+ GGGG GGRP++AQ+GG +G   
Sbjct: 818 LPDPADQGKVILVAAFGKTVIAQGQQAGKFIGGIAKLCGGGG-GGRPNLAQAGGRDGGAL 876

Query: 886 DQAIAGVASFLK 897
           D A+A     L+
Sbjct: 877 DGALASAREQLE 888


>gi|313471498|sp|B9FSH5|SYAP_ORYSJ RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|222635304|gb|EEE65436.1| hypothetical protein OsJ_20798 [Oryza sativa Japonica Group]
          Length = 932

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/926 (35%), Positives = 496/926 (53%), Gaps = 70/926 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  +IR  FL+F+   GH++LPSSSL+P +DPT+  T +GM+ FK IF G+E       T
Sbjct: 36  SGDAIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCAT 94

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI  AW+L TKEF L  
Sbjct: 95  TSQKCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKEAITWAWELTTKEFGLPP 150

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+I+V+ +D+EAF +W    G+  ++I R+  +DNFW+   TGPCGPCSEI++D    
Sbjct: 151 ERLWISVFQDDDEAFSIWHNEVGVPKERIKRLGEDDNFWTSGATGPCGPCSEIYYDFYPE 210

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       +  R+IE +NLVFMQ+ +++      L + +IDTGMGLERMA +LQ+  N
Sbjct: 211 -RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPN 269

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  +  + Y   +     N ++I DH+R+  +LI+DG++P+N GRGY
Sbjct: 270 NYETDLIFPIIEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGY 329

Query: 300 VLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RR +   RL+G             +  L     +      P++   +  I   L
Sbjct: 330 VVRRLIRRVVRTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEIDPDVESRRKSILGEL 389

Query: 352 RSEDERFGKTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           + E+ RF +TL+RG  LLD +L        + G    L+G   F LYDT+G P++I  +I
Sbjct: 390 QREELRFVQTLERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITAEI 449

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG+  +D+  F+  +E QR +++A    +      +    + +    T+F+GYD L 
Sbjct: 450 SGERGVI-VDMKGFDMEMENQRKQSQAAHNVVKLSVGNET--EIVKSIPDTEFLGYDSL- 505

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   +++VK ++  G  V     G  VE+  D+TPFYAE+
Sbjct: 506 ----------------------SATAVVKGLLVNGNSVNVVSEGSDVEIFLDRTPFYAES 543

Query: 525 GGQLGDTGCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           GGQ+GD G               ++I DVQK    IFVH   +++G +     +   +D 
Sbjct: 544 GGQVGDNGFLYVYGEEDAKQKAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEIDAAVDA 603

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R+    +H+ATHLL  AL +I+GS  SQ GS +  D LRFD    +P++  EL  IE 
Sbjct: 604 KLRQGAKAHHTATHLLQSALKSIIGSETSQAGSLVAFDRLRFDFNFHRPLSEEELMKIES 663

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  ++    + T++M+ +DA  +GA A+ G KY ++VRVV V        S  LCGGT
Sbjct: 664 LVNQWVSSATHLETKVMDLQDAKNAGAIAMFGEKYGEQVRVVEVPG-----VSMELCGGT 718

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HVS+T EI    I+SE  I +G+RRIEA+ G     ++  +D  ++ L S LKV   +V 
Sbjct: 719 HVSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCARDNYMRCLCSSLKVKAEDVN 778

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSV 812
           GRVE I EE R  +   +  + ++ V            I +   +   + +VD+  LKS 
Sbjct: 779 GRVETILEELRTTRNEVSSLRSKIAVLKAASLANKATTIDNTRVVVENMGDVDADGLKSA 838

Query: 813 MDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            + L   ++    ++L     + K S++   +  ++     A       AK+ GGGG GG
Sbjct: 839 AEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGVVKMGIQAGKFVGGIAKLCGGGG-GG 897

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P+ AQ+GG        A+      +
Sbjct: 898 KPNFAQAGGRKPENLPGALEKARDEI 923


>gi|55981800|ref|YP_145097.1| alanyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|62296736|sp|P74941|SYA_THET8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|55773213|dbj|BAD71654.1| alanyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 882

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/912 (38%), Positives = 510/912 (55%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57
              + IR  FL FF+  GH  LPS SLIP +DP+L+FT++GM P K  F G +       
Sbjct: 1   MRTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGAKPIFGGRE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++ VTT Q+C+R G    D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI  AW+ LT+ 
Sbjct: 61  WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPC 172
             LD  RL++TV+++D+EA+++W+ + G+  ++I R   ++N+W          GP GPC
Sbjct: 117 LKLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176

Query: 173 SEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQ----NKQERFILPKMSIDT 226
           SEIF+D+G               G+R++EIWNLVF Q+++Q           LP+ +IDT
Sbjct: 177 SEIFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGL R+A +LQ+  + Y  D F  +IQ   +++G  YEG   V+HRVI DH+R+    +
Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG   +N GRGYV+RR++RRA+ +  LLG ++P +  L P +   +G  YPE+ +    
Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I  
Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464
            RG  G+D   F +A+EEQ+SR+RA             ++   L  + GAT+F+GY+ L 
Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRAAMAFEREIFKKGAQVLEELYAERGATEFLGYNALE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V A++   + + EA  G +V+VV D+TPFYAE 
Sbjct: 476 -----------------------AEAEVLALLAGDQSLLEAGPGTEVQVVLDKTPFYAEG 512

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G     G R ++   +K   GIF+H A VE G+LR    +   +D   RR   
Sbjct: 513 GGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDTE 571

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+   EL+ +E  VN  I 
Sbjct: 572 RNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWIM 631

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSSTG 703
            + PV  R M  E+A   GA AL G KY + VRVV VE     G+ S  LCGG HV  TG
Sbjct: 632 ADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRTG 691

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    I SE ++ AG+RRIEA+TG+ A     G   +LK+LA  L+V +  +  R+E++
Sbjct: 692 EIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEKL 751

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             E ++ +      K +L    L      S  +   + +    +  +D+K L+   D L 
Sbjct: 752 LAELKEKEREVESLKARLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADDLV 811

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +     ++L G     K S      +       A  L R  A+  GG G GG+  +AQ 
Sbjct: 812 ARGADVALVLSGGQAVLKLS-----PKAQGMGLEAGALFRALAEKAGGRG-GGKGALAQG 865

Query: 878 GGPNGNKADQAI 889
           GG +  KA +A+
Sbjct: 866 GGLDPRKAREAL 877


>gi|237736819|ref|ZP_04567300.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229420681|gb|EEO35728.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 866

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/910 (35%), Positives = 492/910 (54%), Gaps = 92/910 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF+K  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++  Y  
Sbjct: 1   MLTGNQIRKEFIEFFKKKNHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QK +R     NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L
Sbjct: 60  VTTYQKSIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIVWSWEFVTEVLGL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L+++V+  D+EA K+W +      ++I+R+  ++N+W+   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVSVFTTDDEAEKIWIEKCNFPKERIVRLGEDENWWAAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLPGSSEE---GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G       +     R+IEIWNLVF ++ +        LPK +IDTG GLER+  ++
Sbjct: 176 PAYGGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERVTAMV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K+NN++ DL   L++ + ++T  KY  +     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKSNNFETDLLFPLVEEAGRLTNTKYGEDKEKDFSLKVITDHSRAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ + RLLG +E  +  ++  +   M  AYP+L      I++ ++ E+
Sbjct: 296 GRGYVLRRILRRAVRHGRLLGQSELFLYKMVDKVVEMMNEAYPDLNDNLEHIKKVVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F +TLD+G+ L++  +  +  +  + L+GD+ F+LYDT+G P ++ ++I   +G   +
Sbjct: 356 EKFSRTLDQGIQLVNQEIEKVKSEGGKKLSGDITFRLYDTYGFPYELTEEICEEKG-VEV 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +ARA    +     +       +KYGAT F+GY+ L+ +  +   R
Sbjct: 415 SREEFEAKMEEQKEKARAAREVVMEKGQDSFIEEFYDKYGATNFVGYETLKETAKLLSIR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                      + G+            ++FD TPFY E+GGQ  D G 
Sbjct: 475 EG---------------------KDGKT----------LMIFDTTPFYGESGGQTADIGV 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G+G   ++ DVQ K +GIF H   + +G  +     +L +D  NR   + NH+ATHLL
Sbjct: 504 ISGNGFEGKVVDVQ-KQKGIFTHTVEIVKGEAKEGEEYLLEVDEMNRLATAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +    LRFD  H + +TS E++ +E+ VN+ IA++L V  R 
Sbjct: 563 HKALREVLGTHVQQAGSLVNGQRLRFDFNHYEAMTSEEIEKVENLVNEKIAESLCVTVRN 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++A   GA AL G KY D V             S  LCGGTH+ +  +I L  I SE
Sbjct: 623 MSMDEAKKEGAMALFGDKYGDVV-----RVVKVDDFSIELCGGTHIDNIAKIGLFKIESE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG+RRIEA+TG  A   +   +  LK +A  +K  + NVV RVE++ E  R+    
Sbjct: 678 SGIAAGVRRIEAVTGLGAYELVKKMERTLKEIAKTVKSDEANVVERVEKMTETLRENSKE 737

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K ++   +      +  +I  V  +     +  ++EL+ ++D+L+ K+ S +++L 
Sbjct: 738 IETLKAKITNYEAGSLNAAAEEINGVKVVIKTFKDKTAEELRQMVDSLKDKLGSCVVVLA 797

Query: 829 GISKEKKASVLIVVT-----------------------------------EDLLDRFNAV 853
               E KA   + VT                                   +D      AV
Sbjct: 798 S--GEDKAVFAVGVTKDLIGKVKAGNLVKEAAQIAGGNGGGRPDFAQAGGKDASKIEEAV 855

Query: 854 DLARLSAKVL 863
              R + K L
Sbjct: 856 AKVRETLKTL 865


>gi|88607771|ref|YP_505615.1| alanyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
 gi|123494530|sp|Q2GJ36|SYA_ANAPZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88598834|gb|ABD44304.1| alanyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
          Length = 876

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/888 (41%), Positives = 520/888 (58%), Gaps = 54/888 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAV 61
           +VS IR  FL+FF+K GH   PS+ LI   D +L+FTN+GMVPFK    TG      +  
Sbjct: 5   SVSGIREAFLDFFEKQGHTRYPSAPLIAEGDASLLFTNAGMVPFKQRFITGVSD--VKTA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+LAW  +TKE  L 
Sbjct: 63  TTSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKETAIELAWRFVTKELGLS 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITVY ED+EAF +WKKI+G +  KIIRI+T+DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 123 KERLWITVYSEDQEAFDIWKKITGYTDHKIIRISTSDNFWSMGDTGPCGPCSEIFYDYGD 182

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGGLPG+ E +G RY EIWNLVFMQ+ +    E   LP+  IDTGMGLER+A V+Q  
Sbjct: 183 GVPGGLPGTDESDGARYTEIWNLVFMQYNRDESGELHKLPRGCIDTGMGLERIAAVMQGV 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ D+F+ +I  S  + G        + HRVI DH+R++SFLIA+G+ P NEGR YV
Sbjct: 243 CDNYETDMFQAIIDRSRSIFGSHDHP---IAHRVIADHVRAASFLIAEGLTPGNEGRNYV 299

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355
           LRRI+RRA+ Y   +   +  +  ++P L  E     MG+AYPE+++A+  I  TL+ E+
Sbjct: 300 LRRIIRRAVRYIYQIVGDKFSLHEVVPVLTREGSAGYMGNAYPEIVKAEQSIVSTLKIEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           + F  TL RG  +L+  +  L   E+L+G++AFKLYDT+G PLDI  D+   RGL   D 
Sbjct: 360 DGFADTLRRGTGILEQEIRGLKSGEVLSGEIAFKLYDTYGFPLDITLDVAKERGLK-FDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ + +Q+ ++R H  G  SG  +     +  K+ AT F+GY+              
Sbjct: 419 DGFNRCMAKQKEQSRKHWKG--SGEAQTASSHILNKHKATSFVGYEN------------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--- 532
                     + V S+VK I   GE V     G++   V D TPFYAE+GGQ GDTG   
Sbjct: 464 ----------HRVKSMVKEIFCSGEAVTSMGEGEEGIAVLDITPFYAESGGQEGDTGLLK 513

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                   +       K+  + +H   V RG L+    +   +D Q R +L  NHSATH+
Sbjct: 514 VVTTKCGSVAEVVDTTKSNNVHLHKIRVIRGTLKVGDVVEAVVDKQRREKLRANHSATHI 573

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L   L T++G  + Q GS +  D LRFD +H+ P+T  +L+++E  VN  I  N PV+  
Sbjct: 574 LQSVLRTLIGEGIQQKGSLVAADKLRFDFSHALPLTKEQLRTVEMEVNRQIMANQPVIID 633

Query: 653 IMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             + EDA+  GA AL G KYND+ VRVVS+        S  LCGGTHV  TG+I    I+
Sbjct: 634 HCSLEDAVQEGAIALFGEKYNDQNVRVVSMGS------SKELCGGTHVRFTGDIGAFRII 687

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+ I  G+RRIEAITG    S +    E L+ +A  L V    V+ ++++++ E R++ 
Sbjct: 688 SETGIAQGVRRIEAITGHEVVSSMNRDSESLQQVAECLSVPVDQVIEKLKKVFVEQREIN 747

Query: 772 LIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
              A            C ++  ++       S +  +    V   +++K+ +  ++ +  
Sbjct: 748 KKMATICYTHMNSCAKCIEVGSEIKLYVGEFSNIPVEV---VASYVKEKMHTNEVLAIST 804

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +  K+ + ++ V E  + R  A D+ +   ++   G GGG   +A++ 
Sbjct: 805 TDGKRTTFIVGVGESAIKRIKATDIVKALQQI--QGKGGGNASIARAS 850


>gi|212696194|ref|ZP_03304322.1| hypothetical protein ANHYDRO_00730 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676823|gb|EEB36430.1| hypothetical protein ANHYDRO_00730 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 867

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/900 (34%), Positives = 498/900 (55%), Gaps = 54/900 (6%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + +R  +L FF  K  H +L S SLIP +D +L+  N+GM P K  FTG++K      T+
Sbjct: 7   NELRKEYLNFFGSKKNHTVLKSFSLIPEDDDSLLLINAGMAPLKKYFTGEKKMKNNRATS 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R G    D++ VG T RH TFFEMLGNFSFG YFK  AI  A++ LT+  ++++ 
Sbjct: 67  SQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAYEFLTENLEINKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            L+++VY+ D+EA+K+W +  GLS D+I+R    DNFW + E GPCGP SEIF D+G   
Sbjct: 123 LLWVSVYENDDEAYKIWNEEIGLSKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGVEK 181

Query: 184 ---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                     +++ +R++E+WNLVF QF +   +E   L   +IDTGMGLERMA VLQ K
Sbjct: 182 AIDENDNKPGNDDSDRFMEVWNLVFTQFNKNINKEYTPLLHPNIDTGMGLERMAMVLQNK 241

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++ID+ +++I+  E+++  KY     + ++ RVI DH ++ +F+++DGI P+NE RG
Sbjct: 242 DNIFEIDVNQNIIREIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEKRG 301

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + +LLG     +  ++  +       Y EL+  K  I   ++ E+  F
Sbjct: 302 YVLRRLIRRAFRHGKLLGIEGEFLSSVIDCVIDSYKDEYDELVDRKDKIISVIKKEEANF 361

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             T+D GL +L+  +  L     + L+G  AFKLYDT+G PLD+ ++IL    L  +D  
Sbjct: 362 QNTIDSGLDILNEYIKDLRDKNKDTLDGKEAFKLYDTYGFPLDLTKEILTENNLK-VDTK 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ +E QR+ AR         + + I     +++  T+F+GYD L             
Sbjct: 421 EFDKQMENQRNLARNARKSDAGWSLDSIN---IDEFDKTEFVGYDDLE------------ 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      V + +  +    E V     G K  V+ D+T FYAE GGQ+ DTG  I 
Sbjct: 466 -----------VKANIIGLFDDKEKVSFIKEGNKGIVISDKTSFYAEGGGQVADTGLVIT 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           D  + ++ +VQKK E I  +  +++  +          +D + R  ++ NH+ATHLL  A
Sbjct: 515 DSAKAKVYNVQKKNEIIIHYVEVIDGDLNL--AKADFIVDKERRLDITRNHTATHLLDQA 572

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  IL   V Q GS +  + LRFD T+   ++  E++ IE+ +N+ I Q L V   IM  
Sbjct: 573 LRNILNEDVKQAGSLVDEEKLRFDFTYPNALSDDEIRKIENEINEKIRQQLKVKKEIMPY 632

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +++   GA  L   KY D VRVVS+       +S  LCGG HV+++ E+++  I+ ESS 
Sbjct: 633 KESEKLGAIGLFEDKYKDMVRVVSI-----DDYSIELCGGCHVNNSSEVLMFKILQESSA 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +GIRRIEAITG++   +L      +  ++  LK +  N++ + E + EE + L+L   K
Sbjct: 688 ASGIRRIEAITGRKVYDYLNSNLGLINVVSKVLKTNPKNILSKAESLNEEIKNLKLDIQK 747

Query: 777 RK---LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K    +   +D+         +  + H     D   L++  + +++K +  I++   ++
Sbjct: 748 LKEFNEKDVYKDIENEVQDANGIKLLVHKFENEDLDTLRNFEERIKEKYKDLIVVFATVN 807

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K      V++ L +R+NA  + +  +K+ GG G GG+ + AQ+GG + +K D+A+  
Sbjct: 808 ND-KIVFTASVSDSLTNRYNAGKIVKEVSKITGGNG-GGKKNFAQAGGKDISKLDEALKK 865


>gi|290890700|ref|ZP_06553770.1| hypothetical protein AWRIB429_1160 [Oenococcus oeni AWRIB429]
 gi|290479675|gb|EFD88329.1| hypothetical protein AWRIB429_1160 [Oenococcus oeni AWRIB429]
          Length = 885

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/921 (34%), Positives = 485/921 (52%), Gaps = 65/921 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N + IR  FL+FFQ  GH++ PS SLIP +DP+L++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSAQIRQMFLDFFQSKGHKIEPSQSLIPQDDPSLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  AW+LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGHTARHHTFFEMLGNFSVGDYFKKEAIPWAWELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + ++  +L+IT Y  D E  +LW+  +   A   I    +DNFW + E GP GP +E+F
Sbjct: 117 WYGIEPEKLFITYYPRDTETKELWESQADFVAGHTIP--QDDNFWDIGE-GPSGPDTEVF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227
           FD+G                 E ERY+EIWN+VF QF       +  +   LP  +IDTG
Sbjct: 174 FDRGPKFQNLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNSKYPELPHKNIDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFL 285
           MGLER+ ++ +    N++ DLF  +I+  EQ++G +Y    +  V+ +VI DH+R+ +F 
Sbjct: 234 MGLERVVSIFENAPTNFETDLFLPIIRKVEQLSGKRYGKIKDEDVSFKVIADHIRAVTFA 293

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I+DG LP N GRGYV+RR++RRA+ + R LG  +P +  L+P +   M + YPE+++ + 
Sbjct: 294 ISDGALPGNTGRGYVIRRLLRRAVMHGRKLGIEKPFLTQLVPIVGKIMEAYYPEILENED 353

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQD 403
            I   ++SE+ RF KTL  GL LLD ++    KD    ++G  AFKL+DT+G PL++ ++
Sbjct: 354 KIIPVIQSEEGRFNKTLTAGLNLLDDLIEKAHKDNATHISGKDAFKLFDTYGFPLELTEE 413

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
                GL  +D  SF++ +++Q++RAR     L +   +    +L      + ++G    
Sbjct: 414 QAADAGLT-VDTTSFDKEMKDQQNRARTAQGKLKTFGFQD--EALMSLKVPSVYVG---- 466

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                ++   + + AI+   + V++A +GQK  ++FD+TPFYAE
Sbjct: 467 ------------------WKQSSVDDAKIAAIIVDDQQVDDAKAGQKALLIFDKTPFYAE 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQ+ D G       ++       + A      H       L+    + L +D      
Sbjct: 509 MGGQVADQGTVQAANGKVLAQVTDVQNAPNKQHIHTAKLISDLKIGQKVNLRLDMHRHVA 568

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +S NH+ATHLL  AL  ++  ++ Q GS + PD LRFD TH  P+ +  L  IED VN  
Sbjct: 569 VSKNHTATHLLDQALRNVIAGNIHQAGSLVEPDYLRFDFTHQGPVPTETLDRIEDLVNQK 628

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           IA  LPV     + E A   GA A+ G KY  +VRVVS+     G  +    GGTH  +T
Sbjct: 629 IADALPVSWIETDIESAKKLGAVAVFGEKYGKKVRVVSI-----GDFNKEFDGGTHAKNT 683

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761
            E+ L  IVSES I AG RRIEA+TGQ A   L   ++ LK  A FL   +  +V  ++ 
Sbjct: 684 SELGLFKIVSESGIGAGTRRIEAVTGQSAFKMLKNHEKLLKKAAEFLSAQKLADVPDKIV 743

Query: 762 EIWEEYRKLQLIHAKR--KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDAL 816
           ++    + +Q        K      D    K       ++++  I       L+ ++D  
Sbjct: 744 DLQNNLKNVQKQVESLSDKAANVAADKIFEKTLEAGKYSYIAAQIDNQTVDGLRKIVDEW 803

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +++  S +I+ +  +   KA ++    +   +   A ++ +  +  + GG GGGRP  AQ
Sbjct: 804 RQRAVSDLII-IATNNNGKALLVAASAK--PNEVKAGNVVKAISPKIQGG-GGGRPDFAQ 859

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG N      A+A V+ +L+
Sbjct: 860 AGGKNPAGIANALASVSEYLE 880


>gi|298207536|ref|YP_003715715.1| alanyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83850172|gb|EAP88040.1| alanyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
          Length = 870

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/919 (35%), Positives = 486/919 (52%), Gaps = 72/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR TFLEFF+   H ++ S+ ++  +DPTLMFTN+GM  FK  F G   P    V
Sbjct: 1   MTSQDIRKTFLEFFKSKKHSIVTSAPMVIKDDPTLMFTNAGMNQFKEFFLGNGDPKSSRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+ + ++
Sbjct: 61  TDTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKEEAIAWAWELLTEVYKVN 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+T+++         D EA+  WK    +S D+I+     DNFW M   GPCGPCS
Sbjct: 121 KDNLYVTIFEGDASESLERDTEAYDFWKN--HISEDRILNGNKKDNFWEMGAQGPCGPCS 178

Query: 174 EIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D      +    G    +E+  + +EIWNLVFMQF ++       LP   +DTGMG
Sbjct: 179 EIHVDLRSKEEKDKVSGAELVNEDHPQVVEIWNLVFMQFNRKADGSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+  VLQ+KT+NYD D F  LI+  E +T   Y  +    +  RVI DH+R+ +F IA
Sbjct: 239 FERLCMVLQDKTSNYDTDAFTPLIKEIETITATTYGSSEKTDIAIRVISDHVRAVAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RR + Y    L   EP +  L+  L  +MG AYPEL++ + L
Sbjct: 299 DGQLPSNTGAGYVIRRILRRGIRYGFTFLNTKEPFIYKLVKTLTKQMGDAYPELVKQENL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           I   ++ E+  F +TLD+GLVLLD ++      EI +G  AF+LYDT+G P+D+   IL 
Sbjct: 359 IYNVIKEEESSFLRTLDQGLVLLDNIIEKSKSKEI-SGKKAFELYDTYGFPIDLTSLILR 417

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG + ++   F+  L++QR R+R  +           W +L +     +FIGYD L   
Sbjct: 418 ERGFS-LNEAEFDAELKKQRDRSREATKTET-----GDWVTLIDD-AEQEFIGYDHLEAQ 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   RK                           VE    G+  ++VF+ TPFYAE GG
Sbjct: 471 VKLTRYRK---------------------------VENKKDGEMYQLVFNLTPFYAEGGG 503

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G        +      KK   + VH    +      E +    +D + R + + N
Sbjct: 504 QVGDKGYLESPDGDVVYIVDTKKENNLVVH--FTKNLPKHPEATFKAVVDSKQRMRSASN 561

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL ++LG+HV Q GS +    LRFD +H   +++ EL  +ED VN  I + 
Sbjct: 562 HTATHLLHQALRSVLGTHVEQKGSMVHSGNLRFDFSHFSKVSAEELTQVEDFVNARIREQ 621

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           LP+   R +  + A+  GA AL G KY D VR +          S  LCGGTHV++T EI
Sbjct: 622 LPLEEQRNIPHQKALDEGAIALFGEKYGDAVRTIRFG------KSMELCGGTHVNNTSEI 675

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I+SE ++ +GIRRIEAI+     ++   Q++ L+ + S LK +  + V  V  + E
Sbjct: 676 RHFKIISEGAVASGIRRIEAISNDAVDTYYAKQNQILEDVKSILK-NPQDTVKAVSSLQE 734

Query: 766 EYRKLQLIHAKR---KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E  +L+    +    K +    +L      I  +N ++  I ++D+  +K +   +  ++
Sbjct: 735 ENSELKKQVEQLLKDKAKHLKAELKQELETINGINVLAKEI-DLDAGSMKDLAFEIGGEV 793

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            + + ++ G +   KA +   ++++L+     NA  + R   K + GGG GG+P  A +G
Sbjct: 794 DN-LFLVFGSNHNGKALLSCYISKNLVAEKDLNAGKIIRDLGKHIQGGG-GGQPFFATAG 851

Query: 879 GPNGNKADQAIAGVASFLK 897
           G   +    A+      +K
Sbjct: 852 GKKPDGISAALQASKDIIK 870


>gi|323359964|ref|YP_004226360.1| alanyl-tRNA synthetase [Microbacterium testaceum StLB037]
 gi|323276335|dbj|BAJ76480.1| alanyl-tRNA synthetase [Microbacterium testaceum StLB037]
          Length = 889

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/920 (34%), Positives = 483/920 (52%), Gaps = 59/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL+FF+K  H ++PS+SL+  +DP L+FT +GMVPF    +G   P Y   
Sbjct: 1   MKTAEIAQRFLDFFEKKNHTIVPSASLV-TDDPALLFTVAGMVPFIPYLSGVVPPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
             VQKC+R     ND++ VG+T RH TFF+MLGN+SFG YFKE AI+ AW+LLT      
Sbjct: 60  ADVQKCIRT----NDIEEVGKTPRHGTFFQMLGNWSFGDYFKEDAIRFAWELLTAPEAEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D + L++TVY+ED+EA  LW K+S L  ++I R+  + N+WS    GP GPCSEIF
Sbjct: 116 GLAFDPKDLWVTVYEEDDEARDLWLKLSTLPDERIQRLGKDTNYWSTGLPGPAGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           FD+G    G   G + + +RY+EIWNLVFMQ+E      + +      LP  +IDTGMGL
Sbjct: 176 FDRGPAY-GIDGGPATDDDRYVEIWNLVFMQYEITNVRSKYDFDIVGELPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A + Q   N Y+ D  + ++  + ++ G  Y      + V  R++ DH+RSS  L+A
Sbjct: 235 ERIAFIKQGVDNMYETDQVRPVLDLAAKLAGKAYGAESHEDDVRLRIVADHVRSSLMLLA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGY+LRRIMRRA+   RLLG        L  A    M  +YPE+      +
Sbjct: 295 DGVTPSNEGRGYILRRIMRRAIRSMRLLGVEGATFPELFAASRDAMKESYPEVEADYARL 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E++ F +TL  G  +LD  ++         L+G  AF L+DT+G P+D+  +I 
Sbjct: 355 SAYAIAEEQTFLRTLAAGSAILDQSVAEAKNGGGTTLSGSEAFLLHDTYGFPIDLTLEIA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL+ +D  +F+Q + EQR+RA+A +        ++  +      G T F GY  L+ 
Sbjct: 415 EEAGLS-VDRGAFDQLMLEQRTRAKADARARKGAIADQSAYREFRALGETVFTGYTELQ- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  I+  G+  + A  GQ  E++  +T  YAE+G
Sbjct: 473 ----------------------TESKVLGILVDGQGTDRASEGQIAEIITGETALYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ D G  +G G  L++ DVQ+   G+  H   V  G +         +D  NR     
Sbjct: 511 GQVADKGTIVGPGYELEVLDVQRPVPGLISHTVEVTTGEVSVGAPATTVVDALNRHSAQQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSATHL+H A+   LG   +Q GS      +RFD +    ++      IED  N+ +  
Sbjct: 571 AHSATHLVHAAIRDTLGKTATQTGSLNRAGYMRFDFSWGSALSPETRTEIEDIANNAVRD 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NL V TR+M+ ++A A+GA AL G KY D VR+V +    GG  S  LCGGTHV+ + EI
Sbjct: 631 NLEVTTRVMSLDEAKAAGAMALFGEKYGDTVRMVDI----GGPWSRELCGGTHVARSSEI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ +V E S+ A  RR+EA+ G  A   L  +   +  L++ LK  +  +  R+ E+  
Sbjct: 687 GLVNLVGEQSVGASNRRVEALVGLDAFRDLAAERAIVSQLSTSLKTPREQLTSRIAELAA 746

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKK 819
             +  +   A  + Q     L     +   +  V  ++  +     + +++S+   ++ +
Sbjct: 747 NLKAAEKKIAAFEAQALTGRLPQLVEAAISVGTVRVVAESLGEGASADDVRSLALQVRDR 806

Query: 820 IQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +     ++ L  ++   +A+V++V  E   +R  A      +A  + GGGGGGRP +AQ 
Sbjct: 807 LGTDPAVVALASVA-GGRATVVVVTNESARERGLAAGALAKAAAGILGGGGGGRPDVAQG 865

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG +     QA+ G+ + ++
Sbjct: 866 GGTDATALPQALEGIVADVR 885


>gi|313205146|ref|YP_004043803.1| alanyL-tRNA synthetase [Paludibacter propionicigenes WB4]
 gi|312444462|gb|ADQ80818.1| alanyl-tRNA synthetase [Paludibacter propionicigenes WB4]
          Length = 869

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 480/919 (52%), Gaps = 74/919 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FL+FF   GH+++PS+ ++  +DPTLMFTN+GM  FKNI  G +   Y  V
Sbjct: 1   MTSQEIRQSFLDFFASKGHKIVPSAPMVIKDDPTLMFTNAGMNQFKNIILGNDPIKYSRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ LT+   LD
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLTEVLKLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++         D+EA  +W +   L   +II     DNFW M +TGPCGPCS
Sbjct: 121 KDRLYVTVFEGYAPEGLERDDEAAAIWAQF--LPEHRIINGNKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D  +        GL   +    + IEIWN VFMQ+ ++       LP   IDTGMG
Sbjct: 179 EIHIDIRDNDERAKIDGLTLVNGSHPQVIEIWNNVFMQYNRKADGSLEGLPAKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   +Q   +NYD D+F  +I    +V G +Y  +    +  RVI DH+R+ +F I 
Sbjct: 239 FERLCMAMQGVQSNYDTDVFTPIIAEIGRVCGAEYGKDEKVDIAMRVIADHIRTIAFSIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG     M  L+  L   MG AYPEL+  K L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRHAFMYKLITVLSENMGKAYPELLSQKTL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++ E+E F +TL+ G+ LLD V++         + G VAF LYDT G PLD+ + I
Sbjct: 359 IEKVIKEEEESFLRTLETGIKLLDKVMADSKAAAKTEIEGKVAFTLYDTFGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L       ++I  FN  +++Q+ RAR       + T    W +++E  G ++F+GYD   
Sbjct: 419 LRENNFT-VNIDEFNSEMQKQKERARNA-----AATETGDWVTVRE--GDSEFVGYDFNE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +                              +  ++V  +TPFYAE 
Sbjct: 471 ADTEILRYRKVKQKNQ----------------------------EYYQIVLSKTPFYAEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G    D   + I D +K+            +       +   TID + R+   
Sbjct: 503 GGQVGDCGTLKSDHGSIDIIDTKKENNLAVHI---ANKLPEDVTETFTATIDIEKRKATE 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++++E   N  I 
Sbjct: 560 CNHSATHLLHEALREVLGTHVEQKGSFVSPDALRFDFSHFQKLTKEEIRAVEAIANRKIR 619

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N P+   R     +A A GA AL G KY + VRV+          S  LCGGTHVS+TG
Sbjct: 620 ENYPLQERRETPIAEAQAMGAMALFGEKYGETVRVIQFGS------SVELCGGTHVSATG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I L+ +V+ESSI AGIRRIEAITG+     L  Q E +      L  +  +V+  +  +
Sbjct: 674 NIGLVRVVAESSIAAGIRRIEAITGKAVEELLDKQQETIGEAKELLNNAP-DVISAIRRL 732

Query: 764 WEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQK 818
            EE   L+         K+    + L      +     + +    + + + K++   ++ 
Sbjct: 733 SEESADLKKQVEAFVHEKIMSLRDKLLAEATIVKGFKVIQYE-GSLTADQTKTLAFQIRN 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                +  + G   + K S+ +++++DL+    NA ++AR +AK + GGG GG+P  A +
Sbjct: 792 VQAEKLFFVAGCVADGKPSLTVLLSDDLVAGGLNATNIAREAAKEIQGGG-GGQPFFASA 850

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N     +AIA     L
Sbjct: 851 GGKNLAGIQKAIAKALEAL 869


>gi|148284335|ref|YP_001248425.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
 gi|205830167|sp|A5CD03|SYA_ORITB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146739774|emb|CAM79640.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 891

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/890 (43%), Positives = 530/890 (59%), Gaps = 40/890 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N++ IRTTF+EFF+K GH    SSSL+P NDP+L F N+G+V FK+     E   Y  V 
Sbjct: 8   NINQIRTTFIEFFKKYGHHYASSSSLVPGNDPSLFFVNAGIVQFKDYVRAPETSKYSRVV 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-GYFKERAIQLAWDLLTKEFDLD 121
           T QKCVRAGGKHNDL++VG T RHHTFFEMLGNFSFG    K   +QL W  LTKE  +D
Sbjct: 68  TCQKCVRAGGKHNDLESVGYTARHHTFFEMLGNFSFGEDNAKADFMQLIWSFLTKELFID 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL +TVY  D E  KLW+ I+GL   +IIRI T+DNFWSM   GPCGPC+EIF+D G+
Sbjct: 128 EDRLIVTVYHTDHETAKLWRSIAGLDDSRIIRIKTDDNFWSMGPVGPCGPCTEIFYDHGD 187

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            IPGGLPG+  E G RY+EIWN+VFMQ+EQ N+  R  L K  IDTG GLER+ATVLQ  
Sbjct: 188 KIPGGLPGTKDENGGRYVEIWNIVFMQYEQLNESTRVELAKRCIDTGAGLERIATVLQGV 247

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLFK+LI   E +T +K  G    +HR+I DHLR+S+FLIADG++P+N+GRGYV
Sbjct: 248 YDNYDIDLFKNLIANIEHLTKIKSVGEANFSHRIIADHLRASAFLIADGVMPSNDGRGYV 307

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAM     LG  EP+M  L+P L  EMG  Y EL   + LI   LR+E+E+F  
Sbjct: 308 LRRIMRRAMNQIHQLGCKEPVMHQLVPGLINEMGDFYKELRIRQELITYLLRNEEEKFKT 367

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL LL+    +L     L+G +AFKLYDT+G P D+ QDIL  R    I+   F+Q
Sbjct: 368 TLSKGLKLLEEESKNLTSGSQLSGHIAFKLYDTYGFPFDLTQDILKKRS-ISINKTEFDQ 426

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQ++RAR    G GS   + +   LKE++ AT+F+GY L +                
Sbjct: 427 NMLEQQNRARQLWKGQGSNKEQLLLEKLKEEFRATEFVGYSLYQ---------------- 470

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQ------KVEVVFDQTPFYAEAGGQLGDTGCA 534
                     IV +++Q  + VE     Q      +  ++ +QTPFY ++GGQ+GD G  
Sbjct: 471 -------AEGIVISLIQDNQYVEYIDINQVDDNNKEFWLITNQTPFYGQSGGQMGDIGII 523

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +   + +TD  K      VH   +  G +     + + ID Q R QL I+HSATH+LH
Sbjct: 524 KNNECTIHVTDTIKLFGCTHVHICKIVSGKININAVVHMAIDKQYRTQLQIHHSATHILH 583

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG+H+ Q GS +  D LRFDV+H   I+   L  IE+ VN+II  N  V   IM
Sbjct: 584 AALREILGNHIIQKGSLVAYDYLRFDVSHPTSISREILTKIENRVNEIILNNTAVKLMIM 643

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYE-DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             + AIA GA AL   KY D VR +S+    D   +S  LCGGTHV  TG+I    I+SE
Sbjct: 644 PFDQAIAHGAVALFEEKYGDEVRAISIGETSDARYYSFELCGGTHVKYTGDIGAFRILSE 703

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+I AG+RR+EAI G+          E L  +A    V++  ++ +++ I EE   L+  
Sbjct: 704 SAIAAGVRRVEAIAGKHVIKQARRNSELLDLIAEKFSVTKQTIMSKIDGIIEENNLLKKQ 763

Query: 774 HAKRK---LQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K   L L  +D+      I  +  +   I + D + ++  +    K I++ +++++
Sbjct: 764 LHQLKYNQLILCEKDIQNIADDIGTIKLVYKNIEDYDLQIVRKAVSNTTKNIKNLVMVVI 823

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             + +KK +++I V++++ ++  A +L +     L GG GGG   +AQ G
Sbjct: 824 S-NNDKKNTIIIGVSDNITNKIQANNLVKEIINYL-GGSGGGSATLAQIG 871


>gi|262283148|ref|ZP_06060915.1| alanyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262261400|gb|EEY80099.1| alanyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 872

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/915 (35%), Positives = 490/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP    +
Sbjct: 4   MSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE                E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRIEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    
Sbjct: 356 VKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F           
Sbjct: 416 GMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                            + + S + AIV     VE    G    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G  +     +  T    +KA      H +     L       L ID   R  +  NH
Sbjct: 508 ADHGQILDATGNVVATVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHCVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              K+    +++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKDVKKVKGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++    +D     +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGDKVNVLVASKAKD----IHAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|322385851|ref|ZP_08059494.1| alanine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321270136|gb|EFX53053.1| alanine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 872

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/915 (35%), Positives = 490/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE                E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L K    ++ G   FKLYDT+G P+++ ++I    
Sbjct: 356 VKSEEESFARTLHSGQHFAETIVADLKKKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F           
Sbjct: 416 GMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                            + + S + AIV     VE    G    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G  +     +       +KA      H +     L       L ID   R ++  NH
Sbjct: 508 ADHGQILDAAGNVVAKVTDVQKAPNGQPLHTVEVLAPLALNQEYTLAIDTNRRLRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILGSH +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGSHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LKV Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKVPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+D     +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|313897393|ref|ZP_07830936.1| alanine--tRNA ligase [Clostridium sp. HGF2]
 gi|312957763|gb|EFR39388.1| alanine--tRNA ligase [Clostridium sp. HGF2]
          Length = 875

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/916 (36%), Positives = 498/916 (54%), Gaps = 62/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S IR  FL++F+  GH + P +SL+P NDPTL++ N+G+   K  F G EKP  
Sbjct: 1   MKQLTGSQIRQMFLDYFKSQGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  NRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAISFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                + +LY++VY +D +A+++W ++  +    I++  T+DNFW + E GP GP SEIF
Sbjct: 117 WIGFPKEKLYVSVYTDDADAYRIWTEVCKVDPSHILK--TDDNFWEIGE-GPGGPDSEIF 173

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           +D+GE                E +RYIE+WN+VF QF+ + +   ++   LP+ +IDTGM
Sbjct: 174 YDRGEAYDPEGLGERLFFEELENDRYIEVWNVVFSQFDCKPELDRKDYKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIA 287
           GLER+  ++Q    N+D DLF  +I A+E  T  +Y +  + +  RVI DH+R+ SF +A
Sbjct: 234 GLERLVALVQGGETNFDTDLFLPIIHATEAYTDARYADAQHKMAFRVIADHIRTVSFALA 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG L +NEGRGYVLRR++RRA+ +A+ L      M  L+P +   M   YP + +    I
Sbjct: 294 DGALFSNEGRGYVLRRVLRRAVRFAKKLNIQGAFMYKLVPVVYDIMKDFYPYMEEKLDYI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +++E+ERF  TL  G  LL  V+    +  +++G  AFKLYDT+G PL++  +I   
Sbjct: 354 ARLVKAEEERFHATLADGERLLLQVMEEKKESRVIDGKTAFKLYDTYGFPLELTVEIAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G   +D   F+  +++QR RARA      S  ++ I   L E    + FIGYD      
Sbjct: 414 SGYT-VDKDGFDAEMQQQRERARAARGDAESMGSQSI--DLMEFTQESSFIGYD------ 464

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                S+ V A+ Q G  V+      + +VVFD T FYAE+GGQ
Sbjct: 465 -----------------VRHTSAKVIALFQDGVKVDAIS--DEGDVVFDTTVFYAESGGQ 505

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G    +G++  +    K      + H I++ G LR   ++ L +D + R  ++ NH
Sbjct: 506 VGDSGTICAEGVQAVVDTTIKAPHKQHLSHVIIKEGELRVGDAVELQVDEKKRDIITSNH 565

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  AL  I+GSH+ Q GS ++ + LRFD TH + +   +LK IE  VN  I  + 
Sbjct: 566 SCTHLLQSALKQIVGSHIQQAGSFVSEEYLRFDFTHFEKVNEEQLKEIERLVNRYIGGHY 625

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V    M  E+A  SGA AL   KY D VRVVS+     G  S   CGG HV++T EI +
Sbjct: 626 AVSKVEMPIEEAKKSGATALFDEKYGDVVRVVSM-----GDVSKEFCGGCHVNNTQEIGV 680

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766
             I+SE SI +GIRRI A TG  A +    +D+ L ++AS LK+     V  +V  + EE
Sbjct: 681 CKIISEESIGSGIRRITAKTGYDAYAEFAKEDDTLHAVASDLKLKGISKVEEKVASVLEE 740

Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             +L+   A  +  +     S       ++     +   +   D+K +K ++  ++ + +
Sbjct: 741 NVQLKKELAALQASMFALKASDLVNHMQELNGRQVLIERMDGADAKAMKDIVSNIRSQRE 800

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + ++ L  +  + K + +    +  +       DL R +A ++  G GGGRP MAQSGG 
Sbjct: 801 NCVVFLASVHGD-KVTFVAGADKAAVSGGIKCGDLVREAA-LVCDGKGGGRPDMAQSGGK 858

Query: 881 NGNKADQAIAGVASFL 896
           + +K ++A+  + + L
Sbjct: 859 DASKVEEALHLIKNML 874


>gi|88802166|ref|ZP_01117694.1| alanyl-tRNA synthetase [Polaribacter irgensii 23-P]
 gi|88782824|gb|EAR14001.1| alanyl-tRNA synthetase [Polaribacter irgensii 23-P]
          Length = 872

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 479/919 (52%), Gaps = 72/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR TFL FF++  H ++PS+ ++  +DPTLMF NSGM PFK  F G   P    +
Sbjct: 1   MKSQDIRATFLNFFKEKSHLIVPSAPMVTKDDPTLMFINSGMAPFKEYFLGNAIPKNNRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           +  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D
Sbjct: 61  SDSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKID 120

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  LY+TV++          D EA+ LWKK   +  D+I++    DNFW M   GPCGPC
Sbjct: 121 KDILYVTVFEGTEDADALEMDTEAYDLWKK--HIPEDRILKGNKKDNFWEMGAQGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +         + +    +EIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDIRSAEEKEKVDAKTLINGDHPHVVEIWNLVFMQFNRKADGSLEDLPNKHIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ   +NYD D+FK +I     +T  KY       +  RVI DHLR+ +F I
Sbjct: 239 GFERLCMVLQNVQSNYDTDIFKPIISEIGTITNTKYGSNQQQDIATRVISDHLRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG+A+PELI  K 
Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLDKKEPFIYKLVDVLSKKMGTAFPELIDQKQ 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LIE  +R E+  F KTLD+GL+LLD ++S     EI +G+  F+LYDT G P+D+   IL
Sbjct: 359 LIENVIREEEASFLKTLDKGLLLLDVLISSTDSKEI-SGEKVFELYDTFGFPVDLTALIL 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G   +D   F + L++Q+ R+RA      S +  + W  L E   A +F+GYD L+ 
Sbjct: 418 AEKGYT-LDEKGFQEELQKQKKRSRAA-----SESATEDWTVLVEDAVA-EFVGYDTLKT 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           S  +   RK                           V     G+  ++VF+ TPFY E G
Sbjct: 471 SVKITRYRK---------------------------VTSVKDGEMYQLVFNLTPFYPEGG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G        +      KK   + +H    +          +  ++ + R + + 
Sbjct: 504 GQVGDKGSLEDIHGNVVYILDTKKENNVIIH--FTKNLPKHILEGFIAVVEEKQRYRTAC 561

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+HV+Q GS +    LRFD +H   +T+ EL  +E+ VN  I+ 
Sbjct: 562 NHTATHLLHQALRKVLGTHVTQKGSAVHSKYLRFDFSHFSKLTTDELFEVENFVNARISG 621

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            LP+   R +  +DAI  GA AL G KY D VR +          S  LCGGTHV +T +
Sbjct: 622 KLPLEEQRNVPMQDAIDQGAMALFGEKYGDTVRAIKFGA------SVELCGGTHVKNTSD 675

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    I SE  + +GIRRIEAIT    +      ++ L  +   L  +       V ++ 
Sbjct: 676 LWHFKIKSEVGVASGIRRIEAITNDAVKDFYAKNNKILSEIKETLN-NTKEPTKAVLKLQ 734

Query: 765 EEYRKLQLIHAKR---KLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE   LQ    +    K Q    +L    I    V+F++  + ++D+  +K++   L K 
Sbjct: 735 EENNFLQKQIEQLLREKAQHLSGELKSQLIDMNGVSFLAAKV-DLDANGIKNLAFDLGKD 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             +  ++      + KA +   ++++L +   ++A  + R   K++ GGG GG+   A +
Sbjct: 794 ATNLFLLFANAPSKDKAMLTCYISKELANERGYDAGKVVRELGKLIHGGG-GGQNFFATA 852

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N     +A+     ++
Sbjct: 853 GGKNPGGISKALEKAKEYV 871


>gi|284991581|ref|YP_003410135.1| alanyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284064826|gb|ADB75764.1| alanyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 897

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/920 (34%), Positives = 477/920 (51%), Gaps = 54/920 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FLE F   GH ++PS+SL+   DP+L+FT +GMVPF    TG+E   Y   
Sbjct: 1   MQTAEIRRRFLEHFASRGHTVVPSASLVSP-DPSLLFTVAGMVPFIPYLTGREPAPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+L+T      
Sbjct: 60  TSVQKCVRTL----DIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAIQHAWELVTGSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  R+++TVY +D+EA + W +I+GL  ++I R+   DN+W   + GP GPCSEI+
Sbjct: 116 GLGFDPERIWVTVYLDDDEAAEAWHRIAGLPVERIQRLGKKDNYWHTGQPGPGGPCSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMG 229
           +D+G    P G P     G+R++EIWNLVFMQ+E      +++ +    LPK +IDTGMG
Sbjct: 176 YDRGPQFGPDGGPLVDTAGDRFLEIWNLVFMQYELTDVRSKEDFRIVGELPKKNIDTGMG 235

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
           LER+A +LQ   N Y+ID    ++  + ++ G+ Y  + ++ V  RV+ DH+RS   LI 
Sbjct: 236 LERVAYLLQGVDNLYEIDEVAPVLHRAAEIAGVTYGAKHDDDVRLRVVADHVRSGLMLIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGY+LRR++RRA+   +LLG  E  +  LLP     M ++YPEL      I
Sbjct: 296 DGVTPGNEGRGYILRRLLRRAVRSMKLLGVDEATLPALLPVSRDAMKASYPELETDFARI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+E F +TL  G  L D  +          L+GD AF L+DT+G P+D+  ++ 
Sbjct: 356 SSVAYAEEEAFRRTLSSGTALFDTAVREARAAGTASLSGDQAFSLHDTYGFPIDVTLEMA 415

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLR 464
             +G+  +D   F   +++QR RARA +    +G+ + + +  L   +G T +  YD LR
Sbjct: 416 AEQGVT-VDEEGFRALMQQQRDRARADARAKRTGSVDVLAYRRLLADHGPTDWRAYDTLR 474

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +      L  +     T                   A  G+   VV D+TPFYAE+
Sbjct: 475 TDSRVLGLVSELAAEEGPTSTP------------------AGPGEITRVVLDRTPFYAES 516

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G    DG R ++ DVQ+  +G+  H   V  G LR    L   +D + R    
Sbjct: 517 GGQVADAGVLTWDGGRAEVLDVQRPVKGLVAHQVRVLEGELREGAELTAEVDREWRLSAC 576

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS TH++H AL  +LG    Q+GS   P  LR D      +++ +   IED  N  + 
Sbjct: 577 QAHSGTHVVHAALRQVLGPQALQSGSYNRPGYLRLDFAWQGALSAQQRHDIEDVANAAVR 636

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V    M   +A A GA AL G  Y ++VRVV +    GG  S  LCGGTHV  + +
Sbjct: 637 ADHRVSATYMTLPEAQAFGALALFGETYGEQVRVVEI----GGPWSRELCGGTHVQGSAQ 692

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  L +  ESS+ +G RR+EA+ G     +L  + + ++ L   LK    ++V RV  + 
Sbjct: 693 IGTLALTGESSVGSGSRRVEAVVGLEGFRYLARERDLVRQLGELLKTPTDDLVERVSGML 752

Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
              R +    A+ + Q               +  V  ++   + +   +L+++   ++ +
Sbjct: 753 ARLRDVDKELAELRAQQTLAAAGELAAGARDVGGVAVVTGAPTGLAGGDLRTLALDVRGR 812

Query: 820 IQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           + +    ++L+      K +++  +      R   A D+ R +A  + GG GGG+P +AQ
Sbjct: 813 LSADRPAVVLLASESGGKVALVTALNPAAQARGLTASDVLRAAAAPV-GGRGGGKPDVAQ 871

Query: 877 SGGPNGNKADQAIAGVASFL 896
            GG +      A+      +
Sbjct: 872 GGGTDPAGIPAALQAGEQAV 891


>gi|46199782|ref|YP_005449.1| alanyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|48428512|sp|P61707|SYA_THET2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|46197409|gb|AAS81822.1| alanyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 882

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/912 (38%), Positives = 510/912 (55%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57
              + IR  FL FF+  GH  LPS SLIP +DP+L+FT++GM P K  F G +       
Sbjct: 1   MRTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGAKPIFGGRE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++ VTT Q+C+R G    D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI  AW+ LT+ 
Sbjct: 61  WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPC 172
             LD  RL++TV+++D+EA+++W+ + G+  ++I R   ++N+W          GP GPC
Sbjct: 117 LRLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176

Query: 173 SEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQ----NKQERFILPKMSIDT 226
           SEIF+D+G               G+R++EIWNLVF Q+++Q           LP+ +IDT
Sbjct: 177 SEIFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGL R+A +LQ+  + Y  D F  +IQ   +++G  YEG   V+HRVI DH+R+    +
Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG   +N GRGYV+RR++RRA+ +  LLG ++P +  L P +   +G  YPE+ +    
Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I  
Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464
            RG  G+D   F +A+EEQ+SR+RA             ++   L  + GAT+F+GY+ L 
Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRAAMAFEREIFKKGAQVLEELYAERGATEFLGYNALE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V A++   + + EA  G +V+VV D+TPFYAE 
Sbjct: 476 -----------------------AEAEVLALLAGDQSLLEAGPGTEVQVVLDKTPFYAEG 512

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G     G R ++   +K   GIF+H A VE G+LR    +   +D   RR   
Sbjct: 513 GGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDTE 571

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+   EL+ +E  VN  I 
Sbjct: 572 RNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWIM 631

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSSTG 703
            + PV  R M  E+A   GA AL G KY + VRVV VE     G+ S  LCGG HV  TG
Sbjct: 632 ADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRTG 691

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    I SE ++ AG+RRIEA+TG+ A     G   +LK+LA  L+V +  +  R+E++
Sbjct: 692 EIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEKL 751

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             E ++ +      K +L    L      S  +   + +    +  +D+K L+   D L 
Sbjct: 752 LAELKEKEREVESLKARLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADDLV 811

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +     ++L G     K S      +       A  L R  A+  GG G GG+  +AQ 
Sbjct: 812 ARGADVALVLSGGQAVLKLS-----PKAQGMGLEAGALFRALAEKAGGRG-GGKGALAQG 865

Query: 878 GGPNGNKADQAI 889
           GG +  KA +A+
Sbjct: 866 GGLDPRKAREAL 877


>gi|312867236|ref|ZP_07727446.1| alanine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311097365|gb|EFQ55599.1| alanine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 872

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/918 (35%), Positives = 488/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG     +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGIEGTFLYKLVPTVGKIMESYYPEVLEKQDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL+ G      ++  L      ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIIKSEEESFARTLNSGQHFAQTIVEDLKAKGQTVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESSF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + + S + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +     +  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +           +  +     +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKD----VHAGNVIKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|320449491|ref|YP_004201587.1| alanyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320149660|gb|ADW21038.1| alanyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 882

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/912 (38%), Positives = 497/912 (54%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57
              + IR  +L FF+  GH  LPS SLIP NDP+L+FT++GM P K  F G +       
Sbjct: 1   MRTAEIREKYLSFFEGKGHLRLPSFSLIPENDPSLLFTSAGMAPLKPYFLGAKPIFGGKE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
           ++ +TT QKC+R G    D++NVGRT RH+TFFEMLGNFSFG YFK+ AI  AW+ LT  
Sbjct: 61  WRRITTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAILWAWEFLTDP 116

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-----ETGPCG 170
           K   LD  RL++TVY++D+EA+ +W+ + G+  +KI R   ++N+W          GP G
Sbjct: 117 KWLGLDPDRLWVTVYEDDDEAYAIWRDLVGVPEEKIGRFGEDENYWPGGAITHGPNGPSG 176

Query: 171 PCSEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNK----QERFILPKMSI 224
           PCSEIF+D+G               G+R++EIWNLVF Q+++Q           LP+ +I
Sbjct: 177 PCSEIFYDRGPAFGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNI 236

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSF 284
           DTGMGL R+A +LQ+  + Y  D F  +I+     +G  YEG   V+HRVI DH+R+   
Sbjct: 237 DTGMGLYRVAAILQDVEDFYRTDTFYPIIERVALFSGKPYEGTASVSHRVIADHIRAVVA 296

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            +ADG+  +N GRGYV+RR++RRA+ +  LLG  EP +  L P +   +G  YPE+ +  
Sbjct: 297 ALADGVTFSNTGRGYVIRRLLRRALRHGYLLGLQEPFLHRLAPVVAELLGDFYPEMRENL 356

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I
Sbjct: 357 PAVEKQIRLEEERFLETLEGGLKRLDTLLSGLRPGEVLPGAEAFRLYDTYGFPLDLTVEI 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDL 462
              RG  G+D   F +A+EEQ+ R+RA           + ++   L  + GAT+F+GY  
Sbjct: 417 AAERGF-GVDTEGFKRAMEEQQERSRAAMAFEREIFKKSAQVLEELYAERGATEFLGYGT 475

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                            V A++   + +EEA  G +V+VV D+TPFYA
Sbjct: 476 LE-----------------------AEGTVLALLAGDQSLEEAGPGTEVQVVLDRTPFYA 512

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GD G       R ++    K   GIF+H A VE G LR    +   +D   R  
Sbjct: 513 EGGGQIGDFGHLEWPSGRARVETTLKTERGIFLHRAKVEEGTLRVGERVRAVVDPARR-D 571

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              +H+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+T  EL+ IE  VN  
Sbjct: 572 TERHHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLTQEELERIELLVNRW 631

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSS 701
           I  + PV  R +  E+A   GA AL G KY + VRVV VE     GV S  LCGGTHV  
Sbjct: 632 ILADFPVTWRYLPLEEAKREGAMALFGEKYGEVVRVVRVEGSPLPGVESKELCGGTHVRR 691

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TGEI    I  E ++ AG+RR+EA+ G+ A     G   ++++LA  L V + N+  R+E
Sbjct: 692 TGEIGAFLIQKEEAVSAGVRRLEAVAGEWAVRFARGALNRMRALAERLSVGEANLEERLE 751

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCH----KIADVNFMSHIISEVDSKELKSVMDALQ 817
            + +E +  +      K +L   +L       +   + +    +S VD   L+   D L 
Sbjct: 752 RLLQELKAKEKEVESLKARLVQAELKKEVALSEKGGLRYGVLELSGVDMAALRQAADDLV 811

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            K     ++L G     K S      +       A  L R  A+  GG G GG+  +AQ 
Sbjct: 812 AKGADVALVLSGGQAVLKLS-----PKAQERGLEAGALFRALAERAGGRG-GGKGALAQG 865

Query: 878 GGPNGNKADQAI 889
            G +  KA  A+
Sbjct: 866 AGLSPEKARAAL 877


>gi|157150203|ref|YP_001450848.1| alanyl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|205830220|sp|A8AYI8|SYA_STRGC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157074997|gb|ABV09680.1| alanyl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 872

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/915 (35%), Positives = 487/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE                E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++R A  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRGASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G   FKLYDT+G P+++ ++I    
Sbjct: 356 VKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDVFKLYDTYGFPVELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F           
Sbjct: 416 GMT-VDREGFEVAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                            + + S + AIV +   VE    G    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYNASQLPSKLVAIVAENAEVEAVSEG-TASLIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G  +      +      +KA      H +     L       L ID   R ++  NH
Sbjct: 508 ADHGQILDATGNLVATVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              ++    ++   +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIVSQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K  +++   T+D     +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGDKVNALVASKTKD----IHAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLEAVAGKL 872


>gi|167749584|ref|ZP_02421711.1| hypothetical protein EUBSIR_00542 [Eubacterium siraeum DSM 15702]
 gi|167657438|gb|EDS01568.1| hypothetical protein EUBSIR_00542 [Eubacterium siraeum DSM 15702]
          Length = 878

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/912 (36%), Positives = 498/912 (54%), Gaps = 53/912 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    ++ +R ++L+FF+  GH  + S+ L+P  D +++  N+GM P K  F G E+P  
Sbjct: 1   MKWTGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             VTT QKC+R      D+DNVG+T RH T+FEMLGNFSFG YFK  A   AW+ LTK  
Sbjct: 61  HRVTTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ + RL++T+Y+ED+EA  +W    G+  D+II++   DNFW    +GPCGPCSEI FD
Sbjct: 117 EIPEDRLWVTIYEEDDEAGDIWANEVGVPRDRIIKLGKADNFWEHG-SGPCGPCSEIHFD 175

Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           +GE   P      + E +R IEIWNLVF QF+   K     L   +IDTGMGLER+A V+
Sbjct: 176 RGEKYGPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVM 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+  N +++D  +++++    V G+ Y       V+ RVI DH+RS++F++ DGI P+NE
Sbjct: 236 QDVDNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + R+LG   P +  +   +  E  +AYPEL + +  I++ +++E+
Sbjct: 296 GRGYVLRRLLRRAARHGRMLGVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E F KT+D+G+ +L   +  L     +  IL+G+  FKL+DT+G P+D+ ++IL  +   
Sbjct: 356 ESFAKTVDKGMQILGEFIKELSADDTRKPILSGENLFKLHDTYGFPIDLTREILQEKN-I 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           GID   F + + EQ+++AR++    G G  E    +L      T F+GY  L        
Sbjct: 415 GIDEERFFELMNEQKAKARSNQAFKG-GWDEATANAL--SGLTTTFVGYKSL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S + A+++ GE+ +    G +V VV D TPFYAE+GGQ+GD 
Sbjct: 464 ---------------TADSKILAMIKDGEVTDVCNEGDEVTVVLDITPFYAESGGQVGDC 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G        +Q+ D +K   G F+ +  VE G   T+ S+   +D + R   + NH+  H
Sbjct: 509 GTITAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG HV Q GS + P   RFD +H   +T  EL+ IE  VND I   +PVVT
Sbjct: 569 LLQAALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILAGIPVVT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             +  E+A   GA AL G KY D VRVV       G  S+  CGGTH+ +T +  L  I+
Sbjct: 629 EELPIEEARKKGAMALFGEKYGDIVRVVQ-----AGDVSTEFCGGTHLDNTAKAGLFKII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKL 770
           SE+S+ +G+RRIEA+TG    S        + ++A  LK  +   V+ + E +  E   +
Sbjct: 684 SETSVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPTAVMQKCENMMNEMHAM 743

Query: 771 QLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +        Q+        ++  +   S ++S V    L+   D L+    S I 
Sbjct: 744 QAEIDRLNGIISMSQMKNVTEGATEVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFIA 803

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+S  K   + I   E +    NA  + +  A + GG G GG+P  A +G  +  K 
Sbjct: 804 VLAGVSDGKGNFLCIASPEAVAKGANAGKIVKEIAAIAGGKG-GGKPDTAMAGIADVTKI 862

Query: 886 DQAIAGVASFLK 897
           D+A+  +   +K
Sbjct: 863 DEALLALTDIVK 874


>gi|118469604|ref|YP_887342.1| alanyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
 gi|205830154|sp|A0QWQ4|SYA_MYCS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118170891|gb|ABK71787.1| alanyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
          Length = 896

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/912 (34%), Positives = 468/912 (51%), Gaps = 68/912 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P +   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWNRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWTLLTNPVEEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL+ TVY +D+EA  LW++++GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGFDPERLWATVYLDDDEAIGLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G          + E  RYIEIWNLVFMQ E+     +        LP+ +IDTGMG+
Sbjct: 176 YDRGPEYGVEGGPEANED-RYIEIWNLVFMQNERGEGTSKEDFEILGPLPRKNIDTGMGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ DL + +I     V    Y     ++ V +R+I DH R+++ +IA
Sbjct: 235 ERVACLLQGVDNVYETDLLRPVIDKVAAVAPRGYGAGNHDDDVRYRIIADHTRTAAIIIA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGYVLRR++RR +  A+LLG  +P+M  L+  +   MG +YPEL+     I
Sbjct: 295 DGVSPGNEGRGYVLRRLLRRIIRAAKLLGVEQPVMGDLIATVRDAMGPSYPELVTDFERI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+  F +TL  G  L +     +      +L+G  AF L+DT+G P+D+  ++ 
Sbjct: 355 NRIAVAEETAFNRTLASGSKLFEDAARATKKSGATVLSGSDAFTLHDTYGFPIDLTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL+ +D   F   + EQR RA+A +       T+   +      G T+F G+D L  
Sbjct: 415 AEAGLS-VDQEGFRTLMAEQRQRAKADAAARKQAHTDLSAYRELVDAGPTEFTGFDELTS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV----SGQKVEVVFDQTPFY 521
                                   + +  I   G+ V           +VE++ D+TPFY
Sbjct: 474 -----------------------EATILGIFVDGKRVPVVSHDGLEADRVELILDRTPFY 510

Query: 522 AEAGGQLGDTGCAIGD----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           AEAGGQ+ D G   G       R  +TDVQK A  ++ H   VE G      ++   +D 
Sbjct: 511 AEAGGQIADEGTISGTGASGTARAAVTDVQKIARTLWAHRVNVESGEFVEGDTVTAAVDP 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P++  +   IE+
Sbjct: 571 KWRRGATQGHSGTHMVHAALREVLGPNAVQAGSLNRPGYLRFDFNWQGPLSDDQRTQIEE 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  +  +  V T +   E A A GA A+ G +Y D+VRVV +    GG  S  LCGGT
Sbjct: 631 VTNQAVEADYEVHTFVTELEKAKAMGAMAMFGERYPDQVRVVEI----GGPFSLELCGGT 686

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV ++ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V 
Sbjct: 687 HVHNSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVP 746

Query: 758 GRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKS 811
            RV  + E  +  +    + +L                +  V  ++  +S  + + +L+S
Sbjct: 747 ARVANLVERLKAAEKELDRMRLANARAAAVNAVAGAETVGKVRLVAQRMSGGMSANDLRS 806

Query: 812 VMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868
           ++  ++ K+ S   ++ L+   +      ++ V     D    A DL +  A  +  G G
Sbjct: 807 LVGDIRGKLGSEPAVVALIAEGENDAVPFVVAVNPAAQDLGLRANDLVKQFAAPVN-GRG 865

Query: 869 GGRPHMAQSGGP 880
           GG+  +AQ  G 
Sbjct: 866 GGKADLAQGSGK 877


>gi|15618801|ref|NP_225087.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|15836425|ref|NP_300949.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|16752144|ref|NP_445511.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33242254|ref|NP_877195.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|6707750|sp|Q9Z714|SYA_CHLPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|4377211|gb|AAD19030.1| Alanyl tRNA Synthetase [Chlamydophila pneumoniae CWL029]
 gi|7189887|gb|AAF38754.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|8979266|dbj|BAA99100.1| alanyl tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|33236765|gb|AAP98852.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|269302680|gb|ACZ32780.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 872

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/888 (37%), Positives = 494/888 (55%), Gaps = 46/888 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              ++IR+ FL+F+    H +LPSS + P NDP+++FTN+GM  FK+IF  +EK  Y   
Sbjct: 1   MLSNTIRSNFLKFYANRHHTILPSSPVFPHNDPSILFTNAGMNQFKDIFLNKEKVSYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFK  AI  AW++    F+ +
Sbjct: 61  TTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKAEAIAFAWEVSLSVFNFN 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              +Y TV+++D+EAF LW   + L  D+I R+T  DNFWSMA TGPCG CSE+ FD+G 
Sbjct: 121 PEGIYATVHEKDDEAFALW--EAYLPTDRIFRLTDKDNFWSMANTGPCGYCSELLFDRGP 178

Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    +GER++E WNLVFM+F + ++     LP   +DTG GLER+ +++   
Sbjct: 179 SFGNASSPLDDTDGERFLEYWNLVFMEFNRTSEGSLLALPNKHVDTGAGLERLVSLIAGT 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
              ++ D+ + LI  +EQ++G  Y  ++     RVI DH+RS SF IADG+LP N  RGY
Sbjct: 239 HTVFEADVLRELIAKTEQLSGKVYHPDDSGAAFRVIADHVRSLSFAIADGLLPGNTERGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLR+I+RR++ Y R LG+  P +  ++P+L   MG AYPEL  +   I++ L  E+E F 
Sbjct: 299 VLRKILRRSVNYGRRLGFRNPFLAEIVPSLADAMGEAYPELKNSLSQIQKVLTLEEESFF 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRG  LL  VL        ++G+ AFKL DT+G+P+D +  +      + +D+ +F+
Sbjct: 359 KTLDRGGNLLQQVLKSSSSSSCISGEDAFKLKDTYGMPIDEISLLAKDYDYS-VDMDTFH 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +  +E + R+R + +    GT+E I+  L   +  ++FIGYD L    F           
Sbjct: 418 KLEQEAKERSRKNVV-QSQGTSESIYNEL---HLTSEFIGYDHLSCDTF----------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       ++AI+ +  IV      Q+  +V   +PFYAE GGQ+GD+G       
Sbjct: 463 ------------IEAIISKDHIVSSLQEKQEGAIVLKVSPFYAEKGGQVGDSGEIFCSEG 510

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +T       G+ VHH  + +G L  E ++   ++   R++++ NH+A HLLH AL  
Sbjct: 511 TFIVTHTTSPKAGLIVHHGRISQGSLTVEAAVTAQVNRYRRKRIANNHTACHLLHKALEI 570

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG H+ Q GS +    +R D TH + I+  +L  IE  VN+ I +N PV  R     D 
Sbjct: 571 TLGDHIRQAGSYVDDTKIRLDFTHPQAISPEDLLCIETLVNESIRENEPVDIREALYSDV 630

Query: 660 IASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           + S       G KY+D VRVVS        HS  LCGGTH  +TG+I    I  E ++  
Sbjct: 631 MNSSEIKQFFGDKYSDVVRVVSAG------HSHELCGGTHAEATGDIGFFRITKEHAVAM 684

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEA+TG++A + +  Q E L+ +A+ L+V +  +V R+    +E ++      + +
Sbjct: 685 GIRRIEAVTGEKAEATVHQQSEVLEEIATLLQVPRDQIVSRLTATLDERKQQDKRLNELE 744

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             L    L     +CH+   +  + H ++E ++  L+     L ++I   +I L    K 
Sbjct: 745 NSLIQTKLDKLIHNCHQRQGITCLVHHLAEHENHRLQQYAQCLHQRIPEKLISLWTTEKN 804

Query: 834 KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            K  VL  V++DL     +A DL +       GG  GG+   AQ   P
Sbjct: 805 GKYIVLSRVSDDLITQGVHAQDLLKAVLTPC-GGRWGGKDQSAQGSAP 851


>gi|297195516|ref|ZP_06912914.1| alanyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152826|gb|EDY66040.2| alanyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 854

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/889 (35%), Positives = 480/889 (53%), Gaps = 61/889 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP    V
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY ED+EA ++W+ + G+ A++I R+    NFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYQEDDEAEQIWRDVIGVPAERIQRLGMGPNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +   P        +IDTG+GL
Sbjct: 176 YDRGPEF-GEEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG++Y  +  + V+ RV+ DH+R+S+ LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHGSDVSLRVVADHIRTSTMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RL+G T P++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVKDLVDVVIDTMGLQYPELITDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +LD  +  +      +L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKAKGGTVLPGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G      +  + +  G T+F GY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRDRAKADAKAKKTGHANLSAYREIADSSGNTEFTGYTSTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTVVGLLVDGVSSPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  +Q+ DVQ+   G+ VH  +V+ G +    S    ID + RR ++
Sbjct: 511 GQLADQGRIKLHSGAVIQVRDVQQPVPGVSVHKGVVQVGEVTVGASAYAVIDVRRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVHAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVKGRSEELPEKIAAML 745

Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    K + +               +  V  ++  +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLGAAAGLAQGAKDVRGVALVTGTVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           +I      ++ +   +  +  +V+            A DL R +AK LG
Sbjct: 806 RIPGDRPAVVAVFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLG 854


>gi|303236524|ref|ZP_07323109.1| alanine--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302483272|gb|EFL46282.1| alanine--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 897

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/935 (34%), Positives = 483/935 (51%), Gaps = 88/935 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 12  MMTANEIRDSFKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 71

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L +   L
Sbjct: 72  RADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKENAIDYAWEYLVEVLKL 131

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA   W K   L  D II    +DNFW M ETGPCGPC
Sbjct: 132 DPKDLYVTVFEGSPEEGIARDDEAASYWAK--HLPEDHIINGNKHDNFWEMGETGPCGPC 189

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    +++  + IEIWN+VFMQF++++      L    IDTGM
Sbjct: 190 SEIHVDSRSAEEKAKVPGRELVNKDDPQVIEIWNIVFMQFQRKSDGTLEPLAMNVIDTGM 249

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNHR 273
           G ER+  +LQ K +NYD D+F+  I+  E+++G KY                    +  R
Sbjct: 250 GFERLVRMLQGKNSNYDTDIFQPTIKEIERLSGKKYGFTTPSGKEGEGKTEQEKIDIAMR 309

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332
           V+ DH+R+ +F IAD  LP N   GYV+RRI+RRA+ YA   L   E  +  LL     E
Sbjct: 310 VVADHMRAVAFSIADSQLPGNAKAGYVIRRILRRAVRYAYTFLEQKEAFIYKLLNTFIHE 369

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKL 390
           MG+AYPEL   + LI   ++ E++ F +TL++G+ LL   +  +       L+G  AF+L
Sbjct: 370 MGNAYPELPAQRELIARVIKEEEDSFLRTLEKGINLLTNAMDEMKAQGKTELDGKEAFRL 429

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + I    G   +D   F   + +Q++RAR  ++          W  LKE
Sbjct: 430 FDTYGFPLDLTELICRENGFT-VDEKQFEAEMAQQKARARNAAV-----VENGDWVVLKE 483

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G  +F+GYD       +   RKV  +K                               
Sbjct: 484 --GEQEFVGYDYTEYECHILRYRKVTQKKNTF---------------------------- 513

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V D TPFY E GGQ+GD G  + +   + I D +++          +       E  
Sbjct: 514 FEIVLDHTPFYGEMGGQVGDQGVLVSEDETIDIIDTKRENNQSIHIVKQM---PKNVEAD 570

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D   R   + NH+ATHLL +AL  +LG H  Q GS ++ D LRFD +H + +T  
Sbjct: 571 FMACVDTDKRDASAANHTATHLLDYALKQVLGDHCEQKGSYVSADTLRFDFSHFQKVTDE 630

Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           EL+ +E  VND+I Q+L     R    E+A   GA AL G KY D+VRV+S         
Sbjct: 631 ELRQVERMVNDMIRQDLKCDEHRNTPLEEAKKMGAVALFGEKYGDKVRVISFGP------ 684

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   CGG H +STG I    IV+ESS+ AGIRRIEA+TG++    +   ++ ++ L +  
Sbjct: 685 SCEFCGGIHATSTGRIGFFKIVNESSVAAGIRRIEALTGEQCEEAVYELEDTMRDLKAMF 744

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEV 804
             +  ++   V +  +E+  ++      + Q      N    S   +  V  +  ++  V
Sbjct: 745 N-NAKDLKSVVAKYIQEHDAMKKEMESFRQQAVSRMANGLVESAETVNGVKVVKAVLP-V 802

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKV 862
           +    K ++  +++ I   ++ ++G + E K  + I++++D++     NA  + R +AK+
Sbjct: 803 EPASAKDIVFKVREAIPEKLVCVLGSTHENKPLLSIMLSDDMVKDHELNAGKIIREAAKL 862

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + GG GGG+PH AQ+GG +      A+  V     
Sbjct: 863 IKGG-GGGQPHYAQAGGKDVEGVSAAVEKVIELAN 896


>gi|322375479|ref|ZP_08049992.1| alanine--tRNA ligase [Streptococcus sp. C300]
 gi|321279742|gb|EFX56782.1| alanine--tRNA ligase [Streptococcus sp. C300]
          Length = 872

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/918 (35%), Positives = 490/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPADKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + +   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSDYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M + YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMENYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + + S + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +     +  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDAKGNVVATVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +           +  +     +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|322389170|ref|ZP_08062731.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321144075|gb|EFX39492.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 872

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/918 (35%), Positives = 488/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF         E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPSVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G      ++  L      ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQTIVEDLKAKGQTVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESSF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + + S + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +     +  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +           +  +     +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKD----VHAGNVIKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|145348968|ref|XP_001418913.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|313471499|sp|A4S051|SYAP_OSTLU RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|144579143|gb|ABO97206.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 906

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/908 (36%), Positives = 472/908 (51%), Gaps = 53/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + ++IR  FL+F++  GH +LPSSSL+P  DPT++ T +GM+ FK +F GQ +  ++  T
Sbjct: 23  SGAAIRQRFLKFYETRGHAVLPSSSLVPE-DPTVLLTIAGMLQFKPVFMGQRERAHERAT 81

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVG T RHHTFFEMLGNFSFG YFK+ A Q AW+L T EF L+ 
Sbjct: 82  TTQKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKDACQWAWELATGEFGLNP 137

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R++++V+ ED+EAF +W+ + G+   +I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 138 ERVWVSVFREDDEAFAIWRDVVGVPESRIKRMDEKDNFWAAGPTGPCGPCSELYYDFYPE 197

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      ++  R+IE +NLVFM+  +        L   +IDTGMGLERMA +LQ   N
Sbjct: 198 -RGLEGADLDDDSRFIEFYNLVFMELNRDADGGVTPLKNKNIDTGMGLERMAQILQGVPN 256

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I  +  + G+ Y   N       +VI DH R+ S++I+DG+  +N GRGY
Sbjct: 257 NYETDLIMPIINKAASMAGIDYNACNDVQKQQLKVIGDHTRAVSYMISDGVFASNIGRGY 316

Query: 300 VLRRIMRRAMCYARLLGYTEP-----LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           ++RR++RR +   RLLG             +     +      P++ +    I   L  E
Sbjct: 317 IVRRLLRRVVRNGRLLGIKPEEGASAFTPAIAEVAISMSEGCDPQVAKNSARILAELERE 376

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           +  F KTL RG  +L  ++    K +  L+G  AF LYDT+G PLDI  D+    G+  +
Sbjct: 377 ELSFQKTLGRGEEMLAELIETAKKTKTGLSGKDAFTLYDTYGFPLDITADVATEAGIT-V 435

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F  A+ EQRS ++A    +       +     E    + FIGY+            
Sbjct: 436 DLEGFESAMAEQRSMSQAAHQTVDVTAGNALARVADELGAKSTFIGYESTSSDV------ 489

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S V AIV  GE VEEA  G KV++V D TPFYAE+GGQ+GD G 
Sbjct: 490 ----------------SNVLAIVCGGESVEEAPEGAKVDIVLDVTPFYAESGGQVGDNGV 533

Query: 534 AIGDGIRLQITDVQKK--AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                         +K     I VH A V +G ++    +   +D  +RR+   NH+ATH
Sbjct: 534 LHTADGATLEVSDVQKAGGGRIIVHTATVTKGSIKKGSQVTANVDENSRRRAKSNHTATH 593

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG  VSQ GS    D LRFD    K  T A+L  +E+ VN  I+Q+  +  
Sbjct: 594 LLQSALKKVLGEDVSQAGSLCGFDRLRFDFNSPKAPTEAQLLEVENLVNGWISQSAALTA 653

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M    A   GA  + G KY D VRVV V        S  LCGGTHVS+T EI    I+
Sbjct: 654 EEMPIAAAKDKGATMMFGEKYGDVVRVVDVPG-----ISMELCGGTHVSNTAEIGGFKIL 708

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+ I +GIRRIEA+ G      L  +D  +K LAS L+V    + GRV  + E+ R  Q
Sbjct: 709 SEAGIASGIRRIEAVAGAGVVELLQQRDAVVKQLASALRVPPEEITGRVSSLQEDLRATQ 768

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +    + +L V           ++ +   +   +  VD   LK   + L  ++  G  +
Sbjct: 769 KLAESLRGELAVAKAGALVSQAREVGEAKVLVARLDGVDPAALKVAAENLAAQLGDGAAI 828

Query: 827 LVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++G +      ++ +  + +       A  +   +AK  GGGG GG+P  AQ+GG +  +
Sbjct: 829 VLGSANGANVGLVALFDDKVQKDGGLKAGQVLGAAAKKCGGGG-GGKPGFAQAGGRDATQ 887

Query: 885 ADQAIAGV 892
            D A+   
Sbjct: 888 LDAALDEA 895


>gi|15609692|ref|NP_217071.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|15842093|ref|NP_337130.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|148662394|ref|YP_001283917.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148823751|ref|YP_001288505.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis F11]
 gi|167968834|ref|ZP_02551111.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215404504|ref|ZP_03416685.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|215427951|ref|ZP_03425870.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T92]
 gi|215431513|ref|ZP_03429432.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|253798364|ref|YP_003031365.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 1435]
 gi|289553655|ref|ZP_06442865.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 605]
 gi|289746347|ref|ZP_06505725.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289751174|ref|ZP_06510552.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis T92]
 gi|289754673|ref|ZP_06514051.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis EAS054]
 gi|294994334|ref|ZP_06800025.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 210]
 gi|297635166|ref|ZP_06952946.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|297732158|ref|ZP_06961276.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506]
 gi|306776829|ref|ZP_07415166.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu001]
 gi|306780594|ref|ZP_07418931.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu002]
 gi|306785357|ref|ZP_07423679.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu003]
 gi|306789957|ref|ZP_07428279.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu004]
 gi|306794037|ref|ZP_07432339.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu005]
 gi|306798436|ref|ZP_07436738.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu006]
 gi|306804315|ref|ZP_07440983.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu008]
 gi|306807646|ref|ZP_07444314.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu007]
 gi|306969847|ref|ZP_07482508.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu009]
 gi|306972944|ref|ZP_07485605.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu010]
 gi|307080655|ref|ZP_07489825.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu011]
 gi|307085242|ref|ZP_07494355.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu012]
 gi|313659492|ref|ZP_07816372.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|3122879|sp|O07438|SYA_MYCTU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830157|sp|A5U5Q5|SYA_MYCTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3261815|emb|CAB09762.1| PROBABLE ALANYL-TRNA SYNTHETASE ALAS (ALANINE--TRNA LIGASE)
           (ALANINE TRANSLASE) (ALARS) [Mycobacterium tuberculosis
           H37Rv]
 gi|13882374|gb|AAK46944.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|148506546|gb|ABQ74355.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148722278|gb|ABR06903.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis F11]
 gi|253319867|gb|ACT24470.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 1435]
 gi|289438287|gb|EFD20780.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 605]
 gi|289686875|gb|EFD54363.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289691761|gb|EFD59190.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis T92]
 gi|289695260|gb|EFD62689.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis EAS054]
 gi|308214756|gb|EFO74155.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu001]
 gi|308326528|gb|EFP15379.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu002]
 gi|308329949|gb|EFP18800.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu003]
 gi|308333566|gb|EFP22417.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu004]
 gi|308337594|gb|EFP26445.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu005]
 gi|308341259|gb|EFP30110.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu006]
 gi|308345967|gb|EFP34818.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu007]
 gi|308349066|gb|EFP37917.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu008]
 gi|308352656|gb|EFP41507.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu009]
 gi|308357634|gb|EFP46485.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu010]
 gi|308361576|gb|EFP50427.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu011]
 gi|308365196|gb|EFP54047.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu012]
 gi|323718828|gb|EGB27984.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis CDC1551A]
 gi|328458134|gb|AEB03557.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 4207]
          Length = 904

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/932 (35%), Positives = 482/932 (51%), Gaps = 72/932 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G            E  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG+
Sbjct: 176 YDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A VLQ+  N Y+ DL + +I    +V    Y      + V +R+I DH R+++ LI 
Sbjct: 235 ERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I
Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+  F +TL  G  L + V S        +L+G  AF L+DT+G P+++  ++ 
Sbjct: 355 SRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR 
Sbjct: 415 AETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQ 517
                                   + +  I   G+ V          A  GQ+VE+V D+
Sbjct: 474 -----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDR 510

Query: 518 TPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           TP YAE+GGQ+ D G   G    +  R  +TDVQK A+ ++VH   VE G      +++ 
Sbjct: 511 TPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIA 570

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +  
Sbjct: 571 AVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRT 630

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S  L
Sbjct: 631 QVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLEL 686

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV  
Sbjct: 687 CGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPS 746

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSK 807
             V  RV  + E  R  +    + ++               +I +V  ++  +S  + + 
Sbjct: 747 EEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAA 806

Query: 808 ELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864
           +L+S++  ++ K+ S   ++ L+   + +     +       D    A DL +  A  + 
Sbjct: 807 DLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE 866

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G GGG+  +AQ  G N    D A+  V S +
Sbjct: 867 -GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 897


>gi|254445806|ref|ZP_05059282.1| alanyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
 gi|198260114|gb|EDY84422.1| alanyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
          Length = 883

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/929 (32%), Positives = 456/929 (49%), Gaps = 90/929 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +FL+FF    H ++PS+SL+P + P L+FTN+GM  F   F G+ +     +
Sbjct: 1   MTSNQIRQSFLDFFASKQHAIVPSASLMP-DAPNLLFTNAGMNQFVPYFLGERESANPRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDL++VG    HHTFFEMLGN+S G YFK+ AI+ AW+L+T+ +   
Sbjct: 60  TDTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSIGDYFKQEAIEWAWELITEVWKFP 119

Query: 122 QRRLYITVYDE--------DEEAFKLWK---KISGLSAD-KIIRITTNDNFWSMAETGPC 169
           + RLY TVY          D+EA+  WK   + +GL     II     DNFW M +TGPC
Sbjct: 120 KERLYATVYKPGEGDPATFDQEAYDFWKAIFEKAGLDPKVHIIYGNKKDNFWMMGDTGPC 179

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+  D            + +    IEIWNLVF+QF    + +   L    +DTGMG
Sbjct: 180 GPCSELHIDLTPAGDTKGSLVNADSPYCIEIWNLVFIQFNATPEGDFVPLKNQHVDTGMG 239

Query: 230 LERMATVLQEK---------TNNYDIDLFKHLIQASEQVTGMKYEG-------------N 267
            ER+A ++             +NY+ DLF  L Q  E+++G  Y+               
Sbjct: 240 FERVAGIMATSKNFTDFSTPPSNYNSDLFDTLFQEFEKLSGHTYQRTLPEDLENISEVEM 299

Query: 268 NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
             V  RV+ DH+R  S  IADGILP NE R YVLRRI+RRA+ Y R LG        L+P
Sbjct: 300 KDVIFRVLADHIRCLSCSIADGILPGNESRNYVLRRILRRAVMYGRKLGLENGFFAQLVP 359

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA 387
            +  ++G  +PEL   + +I++ ++SE++ FG+TLDRG+ L D + S     + ++G  A
Sbjct: 360 IVVAQLGHVFPELKAQEEIIQKIIKSEEDAFGRTLDRGIQLFDKIASE---QDQISGLDA 416

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           F LYDT+G P+D+ Q +   R +  +DI  F   +E++R ++       G+   + +   
Sbjct: 417 FTLYDTYGFPIDLTQLMARQRNMK-VDIAGFEAEMEKRRQQS-----KDGAKAAQILIAE 470

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
            +     T+F+G++ L     + +  K                                 
Sbjct: 471 RENDAEPTRFVGFNTLADEDELIDVVK-------------------------------GE 499

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
                +VF+ +PFYAE GGQ+GDTG    +     + D  K A G F+ H +        
Sbjct: 500 NNSSYLVFNHSPFYAEMGGQVGDTGSIEFEDRHFDVLDTIKDANGRFL-HKVSGDAENIL 558

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
                L +D + RR +  +HSATH+LH AL  +LG+HV Q GS +    LRFD  H + I
Sbjct: 559 GHHANLIVDVKRRRSIERHHSATHVLHWALRKVLGTHVHQAGSYVDDQRLRFDFAHFEAI 618

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
              +L  IE   N+ +  N  V        +       A  G KY D VRVV +      
Sbjct: 619 KPEQLALIEKLCNEQLLANNKVNWYETPFNEK-PKEVIAFFGDKYGDVVRVVDIGG---- 673

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S  LCGGTHV +TGEI LL I SES I AG RRIEAI G    SH+   +  + S + 
Sbjct: 674 -FSIELCGGTHVRATGEIGLLKIASESGIAAGTRRIEAIVGDSLYSHINDMEATIASASK 732

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIIS 802
            L  +   ++ +++ +     +L+      + + +         S  +   +  ++  ++
Sbjct: 733 SLSTAPNELIKKIDIVLARNAELEKQLKSFQQKASGNLADDLLKSATETNGLKLVAAKVT 792

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAK 861
             D   L+ +   L  K+  G+++L    K  K SV+   +++ +     A D+ R    
Sbjct: 793 ASDPNALRQLGATLIGKLGEGVVVLGAEVK-GKVSVVAFSSQEAVKAGHKAGDIIRDLTA 851

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            L  G GGG+P  A  G  N  + +  + 
Sbjct: 852 KL-DGRGGGKPDFAMGGATNVAELENTLK 879


>gi|319442138|ref|ZP_07991294.1| alanyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 911

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/939 (34%), Positives = 479/939 (51%), Gaps = 79/939 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F+  + K GH  +PS+SLI  +DP L+F N+GMVPFK  F G++ P +   
Sbjct: 1   MQTHEIRERFINHYVKAGHAEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGEQNPPFPNG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISHAWSLLTDPVD 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD+ RL++TVY +D+EA ++W +  G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGFGLDKDRLWVTVYLDDDEAAQIWHEKIGIPEERIQRLGMADNYWSMGVPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228
           I++D+GE   G   G   +  RYIE+WNLVFMQ E+       + +    LPK +IDTGM
Sbjct: 176 IYYDRGEEY-GEYGGPVVDDTRYIELWNLVFMQNERGKGIGKDDFEIVGPLPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNI 269
           G+ER+A +LQ   N Y+ DL   +I+ +E +TG  Y                      + 
Sbjct: 235 GVERVACILQGVENVYETDLLAPVIKVAEDLTGATYGRSEQLIKAGDTESADYHAAHTDD 294

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL 329
           +  RVI DH R+   LI DG+ P NEGRGY+LRR++RR +  ARLLG T   M  L+  +
Sbjct: 295 IRFRVIADHCRTGLMLILDGVTPGNEGRGYILRRLLRRIIRSARLLGATGVTMEKLMDTV 354

Query: 330 CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVA 387
            + M  +YPE+      I      E+  F KTL+ G  L + V + +    +  L+GD A
Sbjct: 355 RSTMTPSYPEIADNWERIRAVAVGEETAFLKTLESGTRLFETVAAQVKGSGLTELSGDAA 414

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           F L+DTHG P+D+  ++    GL  +D   F+  + EQ++RA+A +        +   + 
Sbjct: 415 FSLHDTHGFPIDLTVEMAAESGLT-VDKEGFDARMAEQKARAKADNRAKKHDHADVAVYR 473

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
                  T F+GYD                              +  IV  G +VE A  
Sbjct: 474 PFVDNHPTVFLGYDSTE-----------------------AEGSILGIVAGGALVERAGE 510

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           GQKV+++ DQTPFYAEAGGQL D G   G G    + DVQK  + +++H+  V  G    
Sbjct: 511 GQKVQLILDQTPFYAEAGGQLADRGQITGTGGAATVDDVQKTGKKVWLHNVTVTGGEFAV 570

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +  T+D+  R +    HS TH++H AL  +LG    Q GS   P  LRFD  + + +
Sbjct: 571 GQRVTATVDHTWRHKARQAHSGTHMIHAALRQVLGPTAVQAGSLNKPGYLRFDFNYGEQL 630

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T+ +L+ IE   N+ +  +  V T   + ++A A GA AL G  Y   VRVV +    GG
Sbjct: 631 TADQLRRIELIANEAVDADYQVNTIETSLDEAKAMGAMALFGENYGAEVRVVEI----GG 686

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S  LCGG HV  + +I  + ++ ESS+ +G+RRIEA +G  +   L  Q +   +LAS
Sbjct: 687 PFSMELCGGIHVEHSSQIGPVAVLGESSVGSGVRRIEAYSGVDSFRFLSDQHKLSGALAS 746

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII- 801
            L++    +  RVE +     + +   A+ +            L    + D+  ++  + 
Sbjct: 747 QLRIPSEELPDRVEALTTRLNEAEKRIAQFRTAELSAKVGDYLLQATMVGDIRVVAARVP 806

Query: 802 SEVDSKELKSVMDALQKKIQS--GIIMLVGISKE-KKASVL-IVVTEDLLDRFNAVDLAR 857
             + + +L+++    + +  S  G+I  +    E  K   +       +     A D+ +
Sbjct: 807 DGIVAGDLRTLATEAKSRAGSDAGVIFFISSDPESGKVPFIAAATDAAVAAGVKAGDIIK 866

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A  + GG GGG+P MAQ  G +    D A+  V   +
Sbjct: 867 TVAPYV-GGRGGGKPAMAQGSGSDAAGIDAAVKAVRDIV 904


>gi|148240734|ref|YP_001226121.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|205830237|sp|A5GPF9|SYA_SYNPW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|147849273|emb|CAK24824.1| Alanyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 891

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/896 (36%), Positives = 494/896 (55%), Gaps = 56/896 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL FF++ GH+ +PS+SL+P  DPT++ T +GM+PFK IF GQ++      T
Sbjct: 16  TGAEIRDAFLAFFEERGHKRMPSASLVPE-DPTVLLTIAGMLPFKPIFLGQQERPAPCAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T  F LD 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTGVFGLDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ +D+EA ++W+++ G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KNLVVSVFRDDDEAEQIWREVVGVNPKRIIRMDEEDNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ  +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 191 L-GDDGIDLEDDDRFIEFYNLVFMQSNRDAEGTLTPLANRNIDTGMGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+ +  G+ Y   +     + +VI DH R+ + LI+DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAAERAGVDYHQLDEKGKTSLKVIGDHSRAVTQLISDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P +  +  A    M SA+P+L + + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGIDKPFLQAMGEASIALMQSAHPQLSERREVILAELQREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+   K   ++G+ AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 370 ETLERGEKLLADVLAAKPKQ--ISGEQAFELYDTYGFPLELTQEIAEEHGL-AVDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+QR RA+A ++ +     + I   +      T+F GY+ L                
Sbjct: 427 TAMEQQRQRAKAAAVSIDLTLQDAID-QVAAGLQDTEFRGYEQLEQ-------------- 471

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537
                    SS ++A+V  GE  + AV+G  V+VV D TPFY E GGQ+GD G  + D  
Sbjct: 472 ---------SSSIQALVVNGEPAQSAVAGDAVQVVLDVTPFYGEGGGQIGDRGTLVADGQ 522

Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                + + +   +   +FVH   V+RG L     +   +D   RR+   NH+ATHLL  
Sbjct: 523 AGDGLIVMVESVSRNRSVFVHSGRVQRGALAVGDVVHGRVDRACRRRAQANHTATHLLQA 582

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   +   + Q GS ++ D LRFD    + +T+ EL+ IE  +N  IA    +  + M 
Sbjct: 583 ALKQEVDPGIGQAGSLVSFDRLRFDFHCPRAVTAEELERIESLINGWIADAHALEVQEMA 642

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IVSES 
Sbjct: 643 IEKAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSESG 697

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--- 772
           + AGIRRIEA+ G     +L  +D  +K L    K   G ++ RV  + +E +       
Sbjct: 698 VAAGIRRIEAVAGAAVLPYLNERDAVVKQLGERFKAQPGEIIERVTALQDELKATGKALA 757

Query: 773 --IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
                    +          + D   +   +  VD   L+    +L  ++  G  +++G 
Sbjct: 758 AAQAELAVAKSAALATKAVAVGDFQLLVERLDGVDGTGLQGAAQSLADQLGDGAAVVLGG 817

Query: 831 SKE----KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +     K  ++    + ++     A       AK+ GGGG GGRP++AQ+GG +
Sbjct: 818 LPDPADQGKVILVAAFGKAVIAQGQQAGKFIGGIAKLCGGGG-GGRPNLAQAGGRD 872


>gi|189183879|ref|YP_001937664.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
 gi|205830168|sp|B3CST3|SYA_ORITI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|189180650|dbj|BAG40430.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
          Length = 889

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/897 (43%), Positives = 533/897 (59%), Gaps = 40/897 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N++ IRTTF+EFF+K GH    SSSL+P NDP+L F N+G+V FK+     E   Y  V 
Sbjct: 6   NINQIRTTFIEFFKKYGHHHASSSSLVPGNDPSLFFVNAGIVQFKDYVRAPETSKYSRVV 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-GYFKERAIQLAWDLLTKEFDLD 121
           T QKCVRAGGKHNDL++VG T RHHTFFEMLGNFSFG    K   +QL W+ LTKE  +D
Sbjct: 66  TCQKCVRAGGKHNDLESVGYTARHHTFFEMLGNFSFGEDNAKADFMQLIWNFLTKELFID 125

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL +TVY  D E  KLW+ I+GL   +IIRI T+DNFWSM   GPCGPC+EIF+D G+
Sbjct: 126 EDRLIVTVYHTDHETAKLWRSIAGLDDSRIIRIKTDDNFWSMGPVGPCGPCTEIFYDHGD 185

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            IPGGLPG+  E G RY+EIWN+VFMQ+EQ N+  R  L K  IDTG GLER+ATVLQ  
Sbjct: 186 KIPGGLPGTKDENGGRYVEIWNIVFMQYEQLNESTRVELAKRCIDTGAGLERIATVLQGV 245

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLFK+LI   E +T +K  G    +HR+I DHLR+S+FLIADG++P+N+GRGYV
Sbjct: 246 YDNYDIDLFKNLIANIEHLTKIKSVGEANFSHRIIADHLRASAFLIADGVMPSNDGRGYV 305

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAM     LG  EP+M  L+  L  EMG  Y EL   + LI   L++E+E+F  
Sbjct: 306 LRRIMRRAMNQIHQLGCKEPVMHLLVQGLINEMGDFYKELRVRQELITYLLKNEEEKFKT 365

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL LL+    +L     L+G +AFKLYDT+G P D+ QDIL  R    I+   F+Q
Sbjct: 366 TLSKGLKLLEEESKNLTSGSQLSGHIAFKLYDTYGFPFDLTQDILKKRS-ISINKTEFDQ 424

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQ++RAR    G GS   + +W  LKE++ AT+F+GY                    
Sbjct: 425 NMLEQQNRARQLWKGQGSNKEQLLWEKLKEEFRATEFVGY-------------------- 464

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQ------KVEVVFDQTPFYAEAGGQLGDTGCA 534
                     IV +++Q  + VE     Q      +  ++ +QTPFY ++GGQ+GD G  
Sbjct: 465 ---SLCQAEGIVVSLIQDNQYVEYIDINQVDDNNKEFWLITNQTPFYGQSGGQIGDIGII 521

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +   + +TD  K      VH   +  G +     + + ID Q R QL I+HSATH+LH
Sbjct: 522 KNNECTIHVTDTIKLFGCTHVHICKIVSGKINLNAVVHMAIDKQYRTQLQIHHSATHILH 581

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG+H+ Q GS +  D LRFDV+H   I+   L  IE+ VN+II  N  V  RIM
Sbjct: 582 AALREILGNHIIQKGSLVAYDYLRFDVSHPTSISKDLLTKIENRVNEIILNNTAVKLRIM 641

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYE-DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             + AIA GA AL   KY D VR +S+    D   +S  LCGGTHV  TG+I    I+SE
Sbjct: 642 PFDQAIAHGAVALFEEKYGDEVRAISIGETSDARYYSFELCGGTHVKYTGDIGAFRILSE 701

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+I AG+RRIEAI G+          E L  +A    V++  ++ +++ I EE   L+  
Sbjct: 702 SAIAAGVRRIEAIAGKHVIKQARQNSELLDLIAEKFSVTKQTIMSKIDGIIEENNLLKKQ 761

Query: 774 HAKRK---LQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K   L L  +D+      I  +  +   I + D + ++  +    K IQ+ +++++
Sbjct: 762 LHQLKYNQLILCEKDIQNMADNIGKIKLVYKNIEDYDLQIVRKAVSNTTKNIQNLVMVVI 821

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             + +KK++++I V++++ ++  A +L +     + GG GGG   +AQ G    +K 
Sbjct: 822 S-NNDKKSTIIIGVSDNITNKIQANNLVKEIINYI-GGSGGGSATLAQIGCQYTSKL 876


>gi|1565288|emb|CAA69650.1| alanyl-tRNA synthatase [Thermus thermophilus]
          Length = 882

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/912 (38%), Positives = 509/912 (55%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57
              + IR  FL FF+  GH  LPS SLIP +DP+L+FT++GM P K  F G +       
Sbjct: 1   MRTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGAKPIFGGRE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++ VTT Q+C+R G    D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI  AW+ LT+ 
Sbjct: 61  WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPC 172
             LD  RL++TV+++D+EA+++W+ + G+  ++I R   ++N+W          GP GPC
Sbjct: 117 LKLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176

Query: 173 SEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQN----KQERFILPKMSIDT 226
           SE F+D+G               G+R++EIWNLVF Q+++Q           LP+ +IDT
Sbjct: 177 SETFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQAPIPGPGILKPLPQKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGL R+A +LQ+  + Y  D F  +IQ   +++G  YEG   V+HRVI DH+R+    +
Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG   +N GRGYV+RR++RRA+ +  LLG ++P +  L P +   +G  YPE+ +    
Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I  
Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464
            RG  G+D   F +A+EEQ+SR+RA             ++   L  + GAT+F+GY+ L 
Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRAAMAFEREIFKKGAQVLEELYAERGATEFLGYNALE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V A++   + + EA  G +V+VV D+TPFYAE 
Sbjct: 476 -----------------------AEAEVLALLAGDQSLLEAGPGTEVQVVLDKTPFYAEG 512

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G     G R ++   +K   GIF+H A VE G+LR    +   +D   RR   
Sbjct: 513 GGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDTE 571

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+   EL+ +E  VN  I 
Sbjct: 572 RNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWIM 631

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSSTG 703
            + PV  R M  E+A   GA AL G KY + VRVV VE     G+ S  LCGG HV  TG
Sbjct: 632 ADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRTG 691

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    I SE ++ AG+RRIEA+TG+ A     G   +LK+LA  L+V +  +  R+E++
Sbjct: 692 EIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEKL 751

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             E ++ +      K +L    L      S  +   + +    +  +D+K L+   D L 
Sbjct: 752 LAELKEKEREVESLKARLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADDLV 811

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +     ++L G     K S      +       A  L R  A+  GG G GG+  +AQ 
Sbjct: 812 ARGADVALVLSGGQAVLKLS-----PKAQGMGLEAGALFRALAEKAGGRG-GGKGALAQG 865

Query: 878 GGPNGNKADQAI 889
           GG +  KA +A+
Sbjct: 866 GGLDPRKAREAL 877


>gi|270292493|ref|ZP_06198704.1| alanine--tRNA ligase [Streptococcus sp. M143]
 gi|270278472|gb|EFA24318.1| alanine--tRNA ligase [Streptococcus sp. M143]
          Length = 872

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + + S + AIV +   VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLPSKLVAIVAENAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +     +  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVLAPLALNAEYTLEIDTDRRLRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGRHATQAGSLNEVEFLRFDFTHFQAVTVEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGYRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIVN-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLEAVAGKL 872


>gi|296876817|ref|ZP_06900865.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296432319|gb|EFH18118.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 872

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 486/918 (52%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG     +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGIEGTFLYKLVPTVGKIMESYYPEVLEKQDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL+ G      ++  L      ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIIKSEEESFARTLNSGQHFAQTIVEDLKAKGQTVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDRDGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESSF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + + S + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +     +  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T   + + A   GA AL G KY   VRVV++       +S  LCGGTHV +T E
Sbjct: 625 EAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTIGG-----YSVELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +           +  +     +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    + K +VL+          +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGD-KVNVLVASK---TKEVHAGNVIKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|187933980|ref|YP_001885372.1| alanyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|205830030|sp|B2THN0|SYA_CLOBB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187722133|gb|ACD23354.1| alanine--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 879

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/911 (34%), Positives = 505/911 (55%), Gaps = 50/911 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L FF+   H  L S SL+P ND +L+  N+GM P K  FTG ++P  
Sbjct: 1   MKFTKTNDLRDAYLNFFESKDHLKLESFSLVPQNDKSLLLINAGMAPLKPYFTGLQEPPK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + +TT QKCVR G    D+DNVG T+RH TFFEMLGNFSFG YFK+  I  AW+ LT   
Sbjct: 61  KRITTCQKCVRTG----DIDNVGITSRHGTFFEMLGNFSFGDYFKKEIIPWAWEFLTGVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L + +LY+T+Y +D+EA++ W  ++ +    I R+   DNFW     GPCGPC+EI F 
Sbjct: 117 ELPKEKLYVTIYLDDDEAYEYWTTLTDVDKSHIFRLGKEDNFWEHG-AGPCGPCTEIHFS 175

Query: 179 QGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           + + +P       E  + ++ IE+WNLVF QF+   K     L   +IDTGMGLER+A V
Sbjct: 176 RTDEVPKNSEEFVELSDADKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q K + ++ID  +++++    +  +KY  +N   V+ R+I DH+RS +F+I+D I+P+N
Sbjct: 236 MQNKNSIFEIDTLENILKEVGNLASVKYGEDNKIDVSLRIITDHIRSITFMISDDIMPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + + LG  +  + +L   +  +  SAYP+L   K  I++ ++ E
Sbjct: 296 EGRGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDCSSAYPDLEVKKEYIKKVIKIE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +++F +TLD G+ +L+ ++S L    +++L G   FKLYDT G P+++ ++IL   GL+ 
Sbjct: 356 EDKFRETLDSGMEILNNLISELKENNEKVLKGADGFKLYDTFGFPMELTKEILEDEGLS- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F++ ++EQR RAR+         T+     +      T F GY+           
Sbjct: 415 LDEDGFHEEMKEQRERARSARKTSNYMGTDVKTLDIISSEIETTFDGYEN---------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        + + + VK +V   +  +    G    VV D TPFYAE GGQ+GDTG
Sbjct: 465 -------------DSLIAEVKTLVNGEDFADSITEGDNAVVVTDVTPFYAEMGGQIGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D  + +I D +K   G  +H      G L+    + L +D   R  +  NH+ATHL
Sbjct: 512 TIYNDNFKGKILDTKKNIGGKIIHFVEAISGELKVGDKVTLEVDNARRENIKKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LGSHV Q GS ++ D LRFD +H + +   EL  +E  VN+ I    PV T 
Sbjct: 572 LDSALVKVLGSHVHQAGSYVSADRLRFDFSHFEGVKEEELLKVEQLVNEAIMSVTPVNTT 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ ++A  SGA  +   KY ++VRVV       G +S  LCGGTH+ +TG+I L  I+S
Sbjct: 632 EMDLQEAKNSGAVGIFDDKYAEKVRVV-----CAGEYSKELCGGTHIDNTGKIGLFKIIS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG  A   +  + E LK ++  LK S+  +  ++++  +E ++ + 
Sbjct: 687 ENGIAAGTRRIEAVTGMEAYKLVNEKAELLKQISGKLKCSEKEITSKLDQQSKEMKEKEK 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +    ++     S   +  +N +++ + +VD + L+ + + ++  + + + +L
Sbjct: 747 EITILKSKFASMEINDIINSAKDVKGINIVAYALKDVDGEALRGLCEKVRDNVNNSLTLL 806

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                + K  +  +  ++ +    +   + +  A +LGGGG GGRP MAQ+GG    K  
Sbjct: 807 TSSV-DGKVVICAMADKEAVSKGAHCGKVIKEVATILGGGG-GGRPDMAQAGGKLPEKIS 864

Query: 887 QAIAGVASFLK 897
           +A+  V   ++
Sbjct: 865 EALDSVYKIVE 875


>gi|116491184|ref|YP_810728.1| alanyl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|122276634|sp|Q04EQ9|SYA_OENOB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116091909|gb|ABJ57063.1| alanyl-tRNA synthetase [Oenococcus oeni PSU-1]
          Length = 885

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/921 (34%), Positives = 483/921 (52%), Gaps = 65/921 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N + IR  FL+FFQ  GH++ PS SLIP +DP+L++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSAQIRQMFLDFFQSKGHKIEPSQSLIPQDDPSLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  AW+LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGHTARHHTFFEMLGNFSVGDYFKKEAIPWAWELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + ++  +L+IT Y  D E  +LW+  +   A   I    +DNFW + E GP GP +E+F
Sbjct: 117 WYGIEPEKLFITYYPRDTETKELWESQADFVAGHTIP--QDDNFWDIGE-GPSGPDTEVF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227
           FD+G                 E ERY+EIWN+VF QF       +  +   LP  +IDTG
Sbjct: 174 FDRGPKFQNLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNSKYPELPHKNIDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFL 285
           MGLER+ ++ +    N++ DLF  +I+  EQ++G +Y    +  V+ +VI DH+R+ +F 
Sbjct: 234 MGLERVVSIFENAPTNFETDLFLPIIRKVEQLSGKRYGKIKDEDVSFKVITDHIRAVTFA 293

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I+DG LP N GRGYV+RR++RRA+ + R L   +P +  L+P +   M + YPE+++ + 
Sbjct: 294 ISDGALPGNTGRGYVIRRLLRRAVMHGRKLEIEKPFLTQLVPIVGKIMEAYYPEILENED 353

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQD 403
            I   ++SE+ RF KTL  GL LLD ++    KD    ++G  AFKL+DT+G PL+  ++
Sbjct: 354 KIIPVIQSEEGRFNKTLTAGLNLLDDLIEKAHKDNATQISGKDAFKLFDTYGFPLESTEE 413

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
                GL  +D  SF++ +++Q++RAR     L +   +    +L      + ++G    
Sbjct: 414 QAADAGLT-VDTTSFDKEMKDQQNRARTAQGKLKTFGFQD--EALMSLKVPSVYVG---- 466

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                ++   + + AI+   + V++A +GQK  ++FD+TPFYAE
Sbjct: 467 ------------------WKQSSVDDAKIAAIIVDDQQVDDAKAGQKALLIFDKTPFYAE 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQ+ D G       ++       + A      H       L+    + L +D      
Sbjct: 509 MGGQVADQGTVQAANGKVLAQVTDVQNAPNKQHIHTAKLISDLKIGQKVNLRLDMHRHVA 568

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +S NH+ATHLL  AL  ++  ++ Q GS + PD LRFD TH  P+ +  L  IED VN  
Sbjct: 569 VSKNHTATHLLDQALRNVIAGNIHQAGSLVEPDYLRFDFTHQGPVPTETLDRIEDLVNQK 628

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           IA  LPV     + E A   GA A+ G KY  +VRVVS+     G  +    GGTH  +T
Sbjct: 629 IADALPVSWIETDIESAKKLGAVAVFGEKYGKKVRVVSI-----GDFNKEFDGGTHAKNT 683

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761
            E+ L  IVSES I AG RRIEA+TGQ A   L   ++ LK  A FL   +  +V  ++ 
Sbjct: 684 SELGLFKIVSESGIGAGTRRIEAVTGQSAFKMLKNHEKLLKKAAEFLSAQKLADVPDKIV 743

Query: 762 EIWEEYRKLQLIHAKR--KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDAL 816
           ++    + +Q        K      D    K       ++++  I       L+ ++D  
Sbjct: 744 DLQNNLKNVQKQVESLSDKAANVAADKIFEKTLEAGKYSYIAAQIDNQTVDGLRKIVDEW 803

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +++  S +I+ +  +   KA ++    +   +   A ++ +  +  + GG GGGRP  AQ
Sbjct: 804 RQRAVSDLII-IATNNNGKALLVAASAK--PNEVKAGNVVKAISPKIQGG-GGGRPDFAQ 859

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG N      A+A V+ +L+
Sbjct: 860 AGGKNPAGIANALASVSEYLE 880


>gi|307564458|ref|ZP_07626999.1| alanine--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307346818|gb|EFN92114.1| alanine--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 884

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/934 (34%), Positives = 486/934 (52%), Gaps = 88/934 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++ +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  +  
Sbjct: 1   MTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKSPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     L 
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHLS 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           ++ +Y+TV++         D+EA K W K   L  D II    +DNFW M +TGPCGPC+
Sbjct: 121 EKDIYVTVFEGSKDENIPRDDEAAKYWSK--HLPKDHIINGNKHDNFWEMGDTGPCGPCT 178

Query: 174 EIFFDQGE--CIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D        G  G    +++  + IEIWN+VFMQF +++      L    IDTGMG
Sbjct: 179 EIHIDSRPLDERNGVLGRDLVNKDDPQVIEIWNIVFMQFNRKSDGSLEPLAMNVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNHRV 274
            ER+  +LQ K +NYD D+F+ +I+  E ++  KY   +                V  RV
Sbjct: 239 FERLVRMLQGKHSNYDTDIFQPIIKRIEALSNYKYGFTSPTGKDGECLTEQEKIDVAMRV 298

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEM 333
           I DHLR+ +F IADG LP+N   GYV+RRI+RR + YA   L   E  M  LLP L +EM
Sbjct: 299 IADHLRAVAFSIADGQLPSNAKAGYVIRRILRRGVRYAYTFLNQREAFMYKLLPTLVSEM 358

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLY 391
           G+AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L       L+G  AF+L+
Sbjct: 359 GAAYPELSAQEELIGRVIKEEEDSFLRTLEKGITLLNGAMDELKAHGQSCLDGKEAFRLF 418

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G PLD+ + I    G   +D   F+  + +Q++RAR  ++     T    W  +++ 
Sbjct: 419 DTYGFPLDLTELICRENGYT-VDEKQFDMEMSQQKARARNAAV-----TENGDWMIVRQ- 471

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            G   F+GYD       +   RKV  +K                                
Sbjct: 472 -GEQTFVGYDYTEYECRILRYRKVTQKKHSF----------------------------Y 502

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EVV D TPFY E GGQ+GD G  + +   + + D +++           E      E S 
Sbjct: 503 EVVLDNTPFYGEMGGQVGDQGVLVSEQETVNVLDTKRENNQSIHII---EELPKNVEASF 559

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  +D   R   + NH+ATHLL +AL  +LG H  Q GS ++P  LRFDV+H + IT  E
Sbjct: 560 MACVDTDKREASAANHTATHLLDYALKEVLGEHAEQKGSYVSPTTLRFDVSHFQKITDEE 619

Query: 632 LKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           L+ +E  VN  I  +      R    E+A   GA AL G KY D+VRVV          S
Sbjct: 620 LRKVERIVNGFIRADYSCDEHRDTPIEEAKKMGAVALFGEKYGDKVRVVRFGP------S 673

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGG H  STG I    IV ESS+ AG+RRIEA+TG  +   +  Q++ L+ L   L 
Sbjct: 674 CEFCGGIHAKSTGSIGFFKIVGESSVAAGVRRIEALTGANSEEAIYTQEDTLRDLKQMLN 733

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVD 805
            +  ++   +++  EE+  ++      + Q           S  ++  V+ +  ++  VD
Sbjct: 734 -NPKDLKVALKKYIEEHEAMKKDMESLRKQGVARHAKTLIESAKEVDGVHIVKAVLE-VD 791

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVL 863
           S   K ++  +++   S +I ++G     +  + +++++D++   + NA  + R +A+++
Sbjct: 792 SSSAKDIVFKVREAFDSKLICVLGSVSGNRPQISVMLSDDMVKEGKKNAGKVIREAAQLI 851

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GG GGG+ H AQ+GG + +  D A+      LK
Sbjct: 852 KGG-GGGQAHYAQAGGKDASNIDAAVDKAVELLK 884


>gi|303258979|ref|ZP_07344958.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303261663|ref|ZP_07347610.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303264332|ref|ZP_07350252.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303265869|ref|ZP_07351766.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303268202|ref|ZP_07354001.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302637243|gb|EFL67731.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302639922|gb|EFL70378.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302642281|gb|EFL72629.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302644604|gb|EFL74854.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302646144|gb|EFL76371.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 872

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREIEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    +  +   FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEGTTSLIFAETP-FYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|291530562|emb|CBK96147.1| alanyl-tRNA synthetase [Eubacterium siraeum 70/3]
          Length = 878

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/912 (36%), Positives = 496/912 (54%), Gaps = 53/912 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    ++ +R ++L+FF+  GH  + S+ L+P  D +++  N+GM P K  F G E+P  
Sbjct: 1   MKWTGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             VTT QKC+R      D+DNVG+T RH T+FEMLGNFSFG YFK  A   AW+ LTK  
Sbjct: 61  HRVTTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ + RL++T+Y+ED+EA  +W    G+  D+II++   DNFW    +GPCGPCSEI FD
Sbjct: 117 EIPEDRLWVTIYEEDDEAGDIWANEVGVPRDRIIKLGKADNFWEHG-SGPCGPCSEIHFD 175

Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           +GE   P      + E +R IEIWNLVF QF+   K     L   +IDTGMGLER+A V+
Sbjct: 176 RGEKYGPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVM 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+  N +++D  +++++    V G+ Y       V+ RVI DH+RS++F++ DGI P+NE
Sbjct: 236 QDVDNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + R+L    P +  +   +  E  +AYPEL + +  I++ +++E+
Sbjct: 296 GRGYVLRRLLRRAARHGRMLDVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E F KT+D+G+ +L   +  L        IL+G+  FKL+DT+G P+D+ ++IL  R   
Sbjct: 356 ESFAKTVDKGMQILGEFIKELSADDTHKPILSGENLFKLHDTYGFPVDLTREILQERN-I 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           GID   F + + EQ+++AR++    G G  E    +L      T F+GY  L        
Sbjct: 415 GIDEERFFELMNEQKAKARSNQAFKG-GWDEATANAL--SGLTTTFVGYKSL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S + A+++ GE+ +    G +V VV D TPFYAE+GGQ+GD 
Sbjct: 464 ---------------TADSKILAMIKDGEVTDVCNEGDEVTVVLDITPFYAESGGQVGDC 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G        +Q+ D +K   G F+ +  VE G   T+ S+   +D + R   + NH+  H
Sbjct: 509 GTITAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG HV Q GS + P   RFD +H   +T  EL+ IE  VND I   +PVVT
Sbjct: 569 LLQAALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILAGIPVVT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             +  E+A   GA AL G KY D VRVV       G  S+  CGGTH+ +T +  L  I+
Sbjct: 629 EELPIEEARKKGAMALFGEKYGDIVRVVQ-----AGDVSTEFCGGTHLDNTAKAGLFKII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKL 770
           SE+S+ +G+RRIEA+TG    S        + ++A  LK  +   V+ + E +  E   +
Sbjct: 684 SETSVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPSAVMQKCENMMNEMHTM 743

Query: 771 QLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +        Q+        ++  +   S ++S V    L+   D L+    S + 
Sbjct: 744 QAEIDRLNGIISMSQMKNVTEGATEVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFVA 803

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+S  K   + I   E +    NA  + +  A + GG G GG+P  A +G  +  K 
Sbjct: 804 VLAGVSDGKGNFLCIASPEAVAKGANAGKIVKEIAAIAGGKG-GGKPDTAMAGIADVTKI 862

Query: 886 DQAIAGVASFLK 897
           D+A+  +   +K
Sbjct: 863 DEALLALTDIVK 874


>gi|309775356|ref|ZP_07670361.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916873|gb|EFP62608.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 875

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/916 (35%), Positives = 502/916 (54%), Gaps = 62/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S IR  FL++F+  GH + P +SL+P NDPTL++ N+G+   K  F G EKP  
Sbjct: 1   MKQLTGSQIRQMFLDYFKSQGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  +
Sbjct: 61  NRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                + +LY++VY +D +A+++W ++  +    I++  T+DNFW + E GP GP SEIF
Sbjct: 117 WIGFPKEKLYVSVYTDDADAYRIWTEVCKVDPSHILK--TDDNFWEIGE-GPGGPDSEIF 173

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           +D+GE                E +RYIE+WN+VF QF+ + +   +E   LP+ +IDTGM
Sbjct: 174 YDRGEAYDPQGLGERLFFEELENDRYIEVWNVVFSQFDCKPELDRKEYKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIA 287
           GLER+  ++Q    N+D DLF  +I A+EQ T ++Y +  N +  RVI DH+R+ +F +A
Sbjct: 234 GLERLVCLVQGGETNFDTDLFLPIIHATEQYTSLRYADAENKMAFRVIADHIRTVTFALA 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG L +NEGRGYVLRR++RR + +A+ L      M  L+P +   M   YP L +    I
Sbjct: 294 DGALFSNEGRGYVLRRVLRRGVRFAKKLNIQGAFMYKLVPVVYDIMKDYYPYLEEKLDYI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +++E+ERF  TL  G  LL  V+       +++G  AFKLYDT+G PL++  +I   
Sbjct: 354 ARLVKAEEERFHATLADGEKLLLQVMEEKKDSHVIDGKTAFKLYDTYGFPLELTVEIAQE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G + +D   F+  +++QR RARA      S  ++ I   L E    + FIGYD      
Sbjct: 414 SGYS-VDKDGFDAEMQQQRERARAAREAAESMGSQSI--DLMEFTRESTFIGYD------ 464

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                S+ V A+ + G  V+      + +V+FD T FYAE+GGQ
Sbjct: 465 -----------------VRHTSATVIALFKDGVRVDAIS--DEGDVIFDTTVFYAESGGQ 505

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G    +G++  + +  K      + H ++  G LR + ++ L +D + R  ++ NH
Sbjct: 506 VGDSGTLRAEGVQAVVNNTTKAPHKQHLSHVVITEGELRVQDTVTLQVDERKRDIITSNH 565

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  AL  ++G+H+ Q GS ++ + LRFD TH + +   +LK IE  VN  I+ + 
Sbjct: 566 SCTHLLQSALKQVVGTHIQQAGSFVSEEYLRFDFTHYEKVNEEQLKKIEQLVNQYISAHY 625

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V    M  E+A  SGA AL   KY D VRVV++     G  S   CGG HV++T EI +
Sbjct: 626 TVSKVEMPIEEAKKSGATALFDEKYGDVVRVVTM-----GDVSKEFCGGCHVNNTQEIGV 680

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766
             I+SE SI +GIRRI A TG  A      +D  L S+A+ LK+     V  +V ++ +E
Sbjct: 681 CKIISEESIGSGIRRITAKTGYDAYCEFAKEDATLHSIAADLKLKGISKVEEKVVQLLDE 740

Query: 767 YRKLQLIHAKRKL---QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             +L+   A  +     L   DL      + +   +   +   D+K LK ++  ++ + +
Sbjct: 741 AAQLKKELAALQASMFALKANDLVHKMQPLNNRQVLIERVDGADAKALKDIVSNIRSQKE 800

Query: 822 SGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + ++ L  + K+ + + +       +       DL R +A V+ GG GGGRP MAQSGG 
Sbjct: 801 NCVVFLAAV-KDDRVTFVAGADALAVQSGIKCGDLVREAA-VICGGKGGGRPDMAQSGGK 858

Query: 881 NGNKADQAIAGVASFL 896
           + +K ++A+  + + L
Sbjct: 859 DASKVEEALHLIKNML 874


>gi|307187766|gb|EFN72738.1| Alanyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]
          Length = 968

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/971 (30%), Positives = 457/971 (47%), Gaps = 84/971 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
            N   IR  +++FF+  GHE + SSS IP +DPTL+FTN+GM  FK IF G   P     
Sbjct: 1   MNAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMA 60

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LT 
Sbjct: 61  KWVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTD 120

Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L   RLY+T +          D+E   LW  + G+ A  ++     DNFW M ETGP
Sbjct: 121 VLKLPADRLYVTYFGGDEKNGLAPDDECKDLWLSL-GIPASHVLPGNMKDNFWEMGETGP 179

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           + +    +EIWNLVF+Q+ +++      LP+  ID G+
Sbjct: 180 CGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKSLPRKHIDCGL 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHL 279
           GLER+ +V+Q K  NYD DLF  L  A E+ T         G +      + +RV+ DH 
Sbjct: 239 GLERLVSVIQNKRANYDTDLFMPLFAAIEKATGAPSYQGKVGAEDVDGIDMAYRVLADHA 298

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG +P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +P
Sbjct: 299 RTITIALADGGMPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVDLLGEVFP 358

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I + +  E+ +F KTL RG  LL+  ++ L   + + GDVA++LYDT+G P+
Sbjct: 359 EVTKDPQNIIDIVNEEETQFLKTLSRGRNLLNRTIAKLESSDTVPGDVAWRLYDTYGFPV 418

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL            EE + +A+  S     G  ++I   +       +  
Sbjct: 419 DLTQLMTEEKGLKIDI-----AGYEESKKQAQLISQNKAGGIDDQINLDIHAITEMQE-H 472

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G           + + +   K           IV A+ +    V++  SG++V ++ D+T
Sbjct: 473 GI-KPTDDSPKYDYKVISSVKYEEYEFAPCIGIVIALRRAKTFVDQVTSGEEVGILLDKT 531

Query: 519 PFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            FYAE GGQ+ D G    + D          +   G  +H   V  G LR    +   +D
Sbjct: 532 NFYAEQGGQIYDEGFLVKVDDEATEIRVKNVQVRAGYVLHIGTVGEGTLRKGDKVYTNVD 591

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR +  NHSATH L++AL  +LG+   Q GS + PD LRFD T+  P+T+ ++K+ E
Sbjct: 592 TARRRLVMANHSATHALNYALRKVLGTGADQKGSLVAPDRLRFDFTNKGPMTTEQVKNTE 651

Query: 637 DNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLGTKYNDRVRVVSVEYEDGG-------- 687
           +   D++ +N  +  +  N        G  A+    Y D VRV+S+              
Sbjct: 652 NITADMVKENKKIYAKESNLALAKTIQGLRAMFEETYPDPVRVISMGIPVDDLEKNPLST 711

Query: 688 ---VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S   CGGTH+  TG I    I SE +I  GIRRI A+TG  A             
Sbjct: 712 AALETSVEFCGGTHLHYTGHIGDFIIASEEAIAKGIRRIVALTGPEAAKAFRTATLLQNQ 771

Query: 745 LASFL--------KVSQGNVVGRVEEIWEE-----------------YRKLQLIH--AKR 777
           L+             +    V ++ E+ EE                  ++L+      +R
Sbjct: 772 LSHLRETIETDNSGTNSKEYVKKIVELTEEIMHAVIPSWRKDNMRATLKELKKSLDDKER 831

Query: 778 KLQLNVEDLSCHKIADV-------NFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVG 829
             +  V +     I  +         +  ++    ++K L S +  ++        +L+ 
Sbjct: 832 AAKAAVANTVVETIQSIIQSRVGCQVLVEVLEAYSNTKALDSALKKIRVLSPETSALLIS 891

Query: 830 ISKE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           I ++ KK   L  V +  +     A +  ++ A  +  G GGG+P  AQ+ G N    ++
Sbjct: 892 IDRDVKKIFALSSVPKSAVSKGLKANEWIQVIAPAM-QGKGGGKPESAQASGTNIACLNE 950

Query: 888 AIAGVASFLKK 898
            I+    F  +
Sbjct: 951 IISRANEFANQ 961


>gi|261366901|ref|ZP_05979784.1| alanine--tRNA ligase [Subdoligranulum variabile DSM 15176]
 gi|282571016|gb|EFB76551.1| alanine--tRNA ligase [Subdoligranulum variabile DSM 15176]
          Length = 886

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/907 (36%), Positives = 488/907 (53%), Gaps = 44/907 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L FF+  GH  L S  L+P +DP+L+  NSGM P K  F GQE+P    VTT
Sbjct: 6   LNELREKYLHFFETKGHLRLGSFPLVPKDDPSLLLINSGMAPMKKWFLGQEEPPRHRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++ VG T RH TFFEMLGNFSF  YFKE  I  AW+ LTKE ++   
Sbjct: 66  CQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTKELEIPAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LYI+VY +D+EA+ +W K  G+  D ++R    DNFW    +GPCGPCSEI++D+G   
Sbjct: 122 KLYISVYLDDDEAYDIWTKKVGIPEDHMVRFGKEDNFWEHG-SGPCGPCSEIYYDRGPEH 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +RY+EIWNLVF QF+   K     LP+ +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPTCKVGCDCDRYMEIWNLVFSQFDSDGKGHYERLPRPNIDTGMGLERLACVMQDVG 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D    ++   E+++G  Y     + ++ RVI DH+RS+ F+++DGILP+NEGRGY
Sbjct: 241 NLFEVDTVASVLHHVERISGKHYGDSEKDDISIRVITDHIRSTVFMVSDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R+LG   P +  L+  +     + YPEL + +  I++ + +E+ERFG
Sbjct: 301 VLRRLLRRAARHGRMLGIDRPFLTELVDTVIESSEAGYPELREHESYIKKVVGTEEERFG 360

Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D GL +L+ ++       + +L+G   FKL DT G PLD+ ++I    G   +D  +
Sbjct: 361 RTIDAGLNILNNMIDERKAAGETVLSGSEVFKLNDTFGFPLDLTKEIAAEAGFT-VDEEA 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+  + +QR RARA  L           F        TQF GY+ L  +  ++       
Sbjct: 420 FHAEMTKQRERARAERLAKDISGWSADLFGELAAE-PTQFDGYETLHETAKVQALSDGEE 478

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
               I       S                  + V VV D+TPFYAE GGQ+ D G     
Sbjct: 479 LADAIATDEAGESK-----------------EGVLVVLDRTPFYAEMGGQVADYGYIASG 521

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             +L++T V+K  +G FVH   +  G ++    +   +D   R  +  NH+ATHLL  AL
Sbjct: 522 DAKLKVTQVKKTPKGYFVHTCELLDGTIKVGDEVTAFVDEARRMAICRNHTATHLLQKAL 581

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS        FD TH   +T  EL  +E  VN+ I  +LPVV + +  E
Sbjct: 582 REVLGEHVHQAGSYQDDKITHFDFTHFSAVTPEELTEVERRVNEKIFASLPVVIQNLPIE 641

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY   VRVV     D G  S+  CGGTHV +T +I    I+SESS+ 
Sbjct: 642 EAKKMGAMALFGEKYGSVVRVV-----DAGGWSTEFCGGTHVQNTSQIGCFKILSESSVA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAK 776
           AGIRRIEA TG      L  + + L   A+ LK +   +V  R E +  E ++       
Sbjct: 697 AGIRRIEATTGFGVLRLLDERTDVLAKTAAALKANNLKDVADRAEAMAAELKETNKQLDG 756

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K ++    +     +   +  V  +S  ++   +  L+ ++D ++ K  + + +LVG +
Sbjct: 757 LKAEMAAAKVDGLFENAADVDGVRIISAYLTGTGADTLREMVDKVRDKAPNAVTVLVG-N 815

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K  + + V+ +   R   A  L +  A + GG G GG+P  A +G  + +K D+A+ 
Sbjct: 816 DGSKTMMAVGVSANAKARGLKAGVLVKKIAAIAGGNG-GGKPDFAMAGIRDISKIDEALN 874

Query: 891 GVASFLK 897
            V   +K
Sbjct: 875 AVPEIVK 881


>gi|320335628|ref|YP_004172339.1| alanyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319756917|gb|ADV68674.1| alanyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 894

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/923 (36%), Positives = 493/923 (53%), Gaps = 70/923 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------ 56
           + + IR  +L+FF+  GH  LPS SLI   DPT +FT +GM PFK  F G          
Sbjct: 8   STAEIREKYLQFFESKGHLRLPSHSLIAP-DPTTLFTVAGMQPFKPQFMGSAPKFSGVPG 66

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT- 115
            ++ VTT QKC+R G    D++NVGRT RH + FEMLGNFSFG YFK  AI  AW+ LT 
Sbjct: 67  EHRRVTTAQKCIRVG----DIENVGRTRRHLSLFEMLGNFSFGDYFKRDAIHWAWEFLTG 122

Query: 116 -KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPC 169
            +   LD  +LY+T+Y++D+EAF  W +  GL    + R   ++NFW          GPC
Sbjct: 123 PEWMGLDASKLYVTIYEDDDEAFGYWTQEIGLDPSHVHRFGADENFWPADAPLKGPNGPC 182

Query: 170 GPCSEIFFDQGECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQN---KQERF--ILPK 221
           GPCSEI+FD+G               E  R++EIWNLVF QF++Q+           LP 
Sbjct: 183 GPCSEIYFDRGPAYGDDSWADYATTRESARFLEIWNLVFPQFDRQDPAADGSPVLADLPF 242

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281
            +IDTGMGLER+A+V+Q+  + Y  D+FK L++   +++G  YEG   V+HRVI +H+RS
Sbjct: 243 KNIDTGMGLERIASVVQDVPDFYSNDVFKPLVERVAELSGKPYEGEVSVSHRVIAEHVRS 302

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +  +ADG++ +N GRGYV+R+I+RRA  +A LLG  EP +  L+P +   MG AYPE+ 
Sbjct: 303 VTMTVADGVVLSNTGRGYVIRKILRRASRHAYLLGLREPTLHKLVPLVVEAMGGAYPEVR 362

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
                +E  +RSE+ERF +TL+ G+  LD +L  + +   L+G+ AF LY T+G PLD+ 
Sbjct: 363 SEAARVEAAIRSEEERFLRTLESGMGRLDALLGKMERGATLSGEEAFTLYGTYGFPLDLT 422

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           ++I    G   +D   F++ALE  +  ARA S   G      +   +     AT F+GYD
Sbjct: 423 REIAEEYG-VSVDEAGFDKALEADQELARAGS-KYGKSELFGVVAEVLGDLPATTFVGYD 480

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L                            V AIV  GE +    +G + +VV D+TP Y
Sbjct: 481 ELE-----------------------AEGRVLAIVSGGEPLSRLTAGSEAQVVLDRTPMY 517

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE GG++GDTG    DG    + D +K   G+F+H   V  G L     +   ++   + 
Sbjct: 518 AEGGGEVGDTGVLTWDGGEAAVLDTRKTPGGVFLHTVEVLHGELSEGAEVRALVNPDRQ- 576

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
               +H+ATHLLH AL  +LGS V Q GS + PD LRFD TH   +++ E+  +E  VN 
Sbjct: 577 ATERHHTATHLLHAALRAVLGSGVRQAGSLVAPDRLRFDFTHGSALSADEVAQVEALVNR 636

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY----EDGGVHSSALCGGT 697
            +  + PV  R M  ++A ASGA AL G KY D VRVVSVE      D  V S  LCGG 
Sbjct: 637 WVTADFPVTWRTMPIDEARASGAMALFGEKYGDEVRVVSVEGGVPFGDTEVASRELCGGA 696

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+ TGEI    I+S+ ++ AG+RR+EA+ G+ A   +  +       AS +  +   + 
Sbjct: 697 HVTRTGEIGAFVILSDENVAAGVRRVEALAGEAAVRWVRERLGAAGRAASSVNATVDQLP 756

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELK 810
            R+ ++  + +  Q   A  K QL    +          ++      +  +S V+  EL+
Sbjct: 757 ERIAQVQAQLKAAQGEIAGLKRQLAQAQMGGGSAGSQVRELGGFKVAAVRLSGVEGNELR 816

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
              D+  ++  + + ++ G        +++  T+D + R  +A  L    A   GG G G
Sbjct: 817 GAADSFLEQTGADVAVVAGDKG-----LVVKATKDAVGRGAHAGQLIGKLAAAGGGKG-G 870

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           GRP MAQ+G  + + A  A+   
Sbjct: 871 GRPDMAQAGVQDADAALGALDSA 893


>gi|260591299|ref|ZP_05856757.1| alanine--tRNA ligase [Prevotella veroralis F0319]
 gi|260536665|gb|EEX19282.1| alanine--tRNA ligase [Prevotella veroralis F0319]
          Length = 888

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/937 (34%), Positives = 490/937 (52%), Gaps = 90/937 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
            T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L    
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++         D+EA   W+K      + I+    +DNFW M +TGPCG
Sbjct: 121 HLDPKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178

Query: 171 PCSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D           G    +++  + IEIWN+VFMQF ++       L    IDT
Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVN 271
           GMG ER+  ++Q K +NYD D+F  +I+  E+++G KY                    + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIEEIERLSGKKYNHTFPEGPNGEGINDEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  M  L+  L 
Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFMYKLINVLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAF 388
            EMG AYPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L       L+G  AF
Sbjct: 359 HEMGVAYPELTAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHGKTELDGKEAF 418

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + I    G   +D   FN+ +E+Q++RAR  ++          W  +
Sbjct: 419 RLFDTYGFPLDLTELICGENGYT-VDEKQFNEEMEQQKARARNAAV-----VENGDWEIV 472

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +E  G  +F+GYD       +   RKV  +K                             
Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   + + D +++          V+      E
Sbjct: 505 --YEIVLDYTPFYGEMGGQVGDQGVLVNEDETINVIDTKRENNQSIHI---VKELPKDVE 559

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  ID   R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT
Sbjct: 560 ADFMACIDTDKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619

Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             EL+ +E  VN++I ++ P+   R    E+A   GA AL G KY D+VRVV        
Sbjct: 620 DEELRQVEKLVNEMIRKDYPLDEHRDTPMEEAKEMGAVALFGEKYGDKVRVVRFGP---- 675

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S   CGG H  STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L +
Sbjct: 676 --SCEFCGGIHAKSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLKA 733

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIIS 802
               +  ++   + +  EE   ++    + + Q               +  V+ +  ++ 
Sbjct: 734 MFN-NAKDLKAVLTKFVEENDAMKKEVERFRAQAVDRAAKSLVDRAETVNGVHVVKAVLP 792

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSA 860
            VD    K ++  +++ +   ++ ++G   E +  + I++++D++     NA  + R +A
Sbjct: 793 -VDPASAKDIVFKVREALPENLVCVLGSVYENRPQLSIMLSDDMVKEHDLNAGKVIREAA 851

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           K++ GG GGG+PH AQ+GG + +  + A+  V   L 
Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDADGINAAVEKVIELLN 887


>gi|305666370|ref|YP_003862657.1| alanyl-tRNA synthetase [Maribacter sp. HTCC2170]
 gi|88708362|gb|EAR00599.1| alanyl-tRNA synthetase [Maribacter sp. HTCC2170]
          Length = 871

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/920 (35%), Positives = 485/920 (52%), Gaps = 73/920 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  FL+FF+   H+++PS+ ++  +DPTLMFTN+GM  FK  F G        +
Sbjct: 1   MNSKEIRAQFLDFFETKKHKIVPSAPMVIKDDPTLMFTNAGMNQFKEFFLGNSVAKSPRM 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFK+ AI+ AW+LLT +  +D
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTDKLQID 120

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  LY++V++          D EA++LW  I  +  D+II     DNFW M + GPCGPC
Sbjct: 121 KDSLYVSVFEGSKDSDNLEMDNEAYELWSGI--VPKDRIIMGNKKDNFWEMGDQGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++    +EIWNLVFMQ+ ++       LP+  +DTGM
Sbjct: 179 SEIHVDIRPAEEKAETSGAFLVNQDHPLVVEIWNLVFMQYNRKADGALEPLPEKHVDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ   +NYD D+F  +I+  E +T   Y  N    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMVLQGVQSNYDTDVFTPIIREIETITNADYGKNEEIDIAIRVIADHIRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP M  L+  L   MG+A+PEL   + 
Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMYRLVNVLTETMGNAFPELKDQRQ 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LIE  ++ E+  F  TL++GLVLLD ++S     +++ G  AF+LYDT+G P+D+   IL
Sbjct: 359 LIENVVKEEENSFLNTLEQGLVLLDNLVSKAK-GKVVQGRKAFELYDTYGFPIDLTALIL 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G   +D   F++A++EQ+ R+R+      S   ++ W  L +     +F+GYDLL  
Sbjct: 418 EEKGYT-LDEKGFHEAMKEQKDRSRSA-----SEIAKEDWMVLSDD-SEQEFVGYDLLET 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  + + RK                           V     G++ ++VF+ TPFY E G
Sbjct: 471 NVKLVKYRK---------------------------VTSKKEGEQYQMVFNLTPFYPEGG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G        +      KK     VH A  +     T  +    +D + R++ + 
Sbjct: 504 GQVGDKGYLEAPNGDVVYILDTKKENNEIVHFA--KNLPKSTSDTFKAVVDKKQRQRTAA 561

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+HV Q GS +    LRFD +H   +T  EL+ +E+ VN  I  
Sbjct: 562 NHTATHLLHQALREVLGNHVEQKGSAVHSKYLRFDFSHFSKMTVEELREVENFVNARIEG 621

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            LP+   R +  E+A+  GA AL G +Y + VR +          S  LCGG HV  T +
Sbjct: 622 QLPLDENRSVPMEEALKGGAMALFGEEYGETVRTIRFG------QSMELCGGAHVKITSD 675

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SE ++ AGIRRIEAIT    +      +  L  +   L  +  N V  V+ + 
Sbjct: 676 IWHFKIKSEGAVAAGIRRIEAITYDAVKDFYFHNNRSLFEIKDLLN-NAQNPVNAVKALQ 734

Query: 765 EEYRKLQLIHAKR---KLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E  KL+    +    K +    DL     ++  + F++  + ++D+  +K +   +   
Sbjct: 735 DENAKLKKEVEQLLKDKAKNLKGDLLAELKEVNGIQFLAKKV-DLDAAGIKDLSFEMGN- 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            ++ + +L G  +  KA +   ++++L+     NA  + R   K + GGG GG+P  A +
Sbjct: 793 NKNNLFLLFGTEQNGKALLSCYISKELVAEKNLNAGTIVRELGKCIQGGG-GGQPFFATA 851

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG N    ++A++    +L 
Sbjct: 852 GGKNPAGIEEALSKAEEYLN 871


>gi|294672801|ref|YP_003573417.1| alanine--tRNA ligase [Prevotella ruminicola 23]
 gi|294472795|gb|ADE82184.1| alanine--tRNA ligase [Prevotella ruminicola 23]
          Length = 887

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/935 (34%), Positives = 483/935 (51%), Gaps = 89/935 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F +FF+   H ++PS+ ++  +DPTLMFTN+GM  +K+I  G   P  +  
Sbjct: 1   MTANEIRDSFKKFFESKQHAIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI +AW+ L     L+
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDMAWEYLVDVLKLN 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
              LY+TV++         D+EA K W K   +  D II    +DNFW M +TGPCGPCS
Sbjct: 121 PEDLYVTVFEGSPEENIPRDDEAAKYWAK--HVPEDHIINGNKHDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGECI------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           EI  D             G    +++  + IEIWN+VFMQF ++       L    IDTG
Sbjct: 179 EIHVDSRTPEQKAASGKTGRELVNQDDPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--------------NHR 273
           MG ER+  ++Q K +NYD D+F+ +I+A +Q+TG+KY                      R
Sbjct: 239 MGFERLVRMMQGKHSNYDTDVFQPIIKAEQQITGLKYFTFEEETESPISKEQDDINVAMR 298

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332
           V  DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   +  +  L+P L  E
Sbjct: 299 VCADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNQKDGFLYKLVPTLVAE 358

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKL 390
           MG A+PEL   + L+ + ++ E+E F +TL++G+ +L+  ++         L+G  AF+L
Sbjct: 359 MGGAFPELEAQQQLVTKVIKEEEESFLRTLEKGIGMLNDAMNTLKAEGKTELDGVQAFRL 418

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + I    G   ++   FN  +++Q+ RAR       +      W  L  
Sbjct: 419 FDTYGFPLDLTELICRENGFT-VNEEQFNVEMQKQKDRARNA-----AAVENSDWVELAA 472

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G  QF+GYD       +   RKV                                 + 
Sbjct: 473 --GEQQFVGYDYTEYECHIIRYRKVTQ----------------------------KKNEF 502

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V D TPFY E GGQ+GD G  + +   + I D +++          V++        
Sbjct: 503 YELVLDNTPFYGEMGGQVGDCGVLVNEAETINIIDTKRENGQSVHI---VKQLPKDPAAQ 559

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D   R   + NH+ATHLL +AL  ILG HV Q GS ++PD LRFD +H + +T  
Sbjct: 560 FMACVDTDKRNASAANHTATHLLDYALKQILGDHVEQKGSFVSPDTLRFDFSHFEKVTDE 619

Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           +L+ +E  VND+I Q++ +   R +  ++A   GA AL G KY D+VRVV          
Sbjct: 620 QLREVERMVNDMIRQDIHIDEHRDVPFDEAKKLGAIALFGEKYGDKVRVVRFGP------ 673

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   CGG H SSTG I    I+SESS+ AGIRRIEA TGQ     L   ++ LK++ +F 
Sbjct: 674 SCEFCGGIHASSTGRIGFFKIISESSVAAGIRRIEAKTGQECEELLYQTEDILKAVKAFF 733

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV 804
             +  ++ G +++  EE+  ++      + Q              ++  V  +S ++  +
Sbjct: 734 N-NAKDLQGVIKKYIEEHDSMKKEIEAFQAQAVERAAKQLVDKAREVNGVKVVSAVLP-M 791

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKV 862
           +    K +   ++  ++  ++ ++G     K  + I++++D++     NA  + R +AK+
Sbjct: 792 NPAAAKDLAFKIRAAVEGSLLCVLGTHDNNKPQLSIMMSDDMVSDHGLNAGQMVREAAKL 851

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + GG GGG+PH AQ+GG N +    A+  V    K
Sbjct: 852 IQGG-GGGQPHFAQAGGKNADGLSAAVDKVLELAK 885


>gi|322387551|ref|ZP_08061160.1| alanine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321141418|gb|EFX36914.1| alanine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 872

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 491/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D +++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDTDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFLPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G    + +++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAETIVADLKEKGQTVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVTEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +     +  T    +KA      H +     L       LTID   R ++ 
Sbjct: 505 GQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVLAPLALNQEYTLTIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EAIAVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A++G+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVSGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              +     +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKDVKEANGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGDKVNLLVASKTKD----IHAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|331266120|ref|YP_004325750.1| alanyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326682792|emb|CBZ00409.1| alanyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 872

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 489/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y ED++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPADKLYMTYYPEDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + + S + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +     +  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDAKGNVVATVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +             ++     +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKDVNEANGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K    +  VA  L
Sbjct: 855 GSNQAKIQDLLDAVAGKL 872


>gi|146299654|ref|YP_001194245.1| alanyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|205830093|sp|A5FIP9|SYA_FLAJO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146154072|gb|ABQ04926.1| alanyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 879

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/928 (35%), Positives = 484/928 (52%), Gaps = 81/928 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  FL+FF+  GH ++PS+ ++  +DPTLMF NSGM  FK  F G   P    +
Sbjct: 1   MKSQDVRKQFLDFFESKGHTIVPSAPIVLKDDPTLMFNNSGMAQFKEFFLGNGTPKSPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY++V++         D+EA+ +WK +  +  D+II     DNFW M + GPCGPCS
Sbjct: 121 KENLYVSVFEGSKEDNVPFDQEAWDIWKTL--IDEDRIILGNKKDNFWEMGDQGPCGPCS 178

Query: 174 EIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D      + +  G    + +  + +EIWN VFM+F ++       LP   +DTGMG
Sbjct: 179 EIHVDLRSAEEKALVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDH 278
            ER+   LQ KT+NYD D+F  LI+  E +TG KY  N+            +  RV+ DH
Sbjct: 239 FERLCMALQGKTSNYDTDVFMPLIREIETITGAKYTTNDVTGISEEQNKMNIAIRVVADH 298

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
           +R+ +F IADG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L+  L  +MG ++
Sbjct: 299 VRAVAFAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLGTKEPFIYKLVETLSEQMGDSF 358

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+   K L    +R E+  F KTLD+GL+LLD V+ +    + ++G  AF+LYDT+G P
Sbjct: 359 PEIRTQKALCSNVIREEENSFLKTLDQGLILLDAVILN-NTGDTIDGKKAFELYDTYGFP 417

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   IL  RGL  +D   F + L+ Q+ R+RA      S  T   W  + E     +F
Sbjct: 418 IDLTALILSERGLK-LDEEGFQEQLQLQKERSRAA-----SKVTAGDWNVIVEDDIQ-EF 470

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GYD L     + + R+                           VE    G+  ++VF+ 
Sbjct: 471 VGYDRLSQQVKITKYRR---------------------------VESVKDGEIFQLVFNA 503

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFY E+GGQ GD G        +      KK     +H    +        +    +D 
Sbjct: 504 TPFYGESGGQTGDKGYLEAQNGDIVYIIDTKKENNQTIHL--TQSLPENITGTFNAVVDA 561

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R + S NHSATHLLH  L  ILG+H+ Q GS +    LRFD +H   +T  EL  +E+
Sbjct: 562 NQRAKTSSNHSATHLLHQGLRKILGTHIEQKGSMVRNASLRFDFSHFSKVTDEELLEVEN 621

Query: 638 NVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
            VN  I ++LP++ +    ++ A+  GA AL G KY D VR +          S  LCGG
Sbjct: 622 FVNARIRESLPLIEKRAIPKEQALEDGAIALFGEKYGDLVRTIKFGD------SVELCGG 675

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV++T +I    IVSE ++ AGIRRIEAIT + A+ +   Q   L  +   LK +  + 
Sbjct: 676 THVANTSDIWHFKIVSEGAVAAGIRRIEAITSEAAKEYFESQAVSLAEIKEALK-NAQDP 734

Query: 757 VGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKS 811
           V  +  + +E  +L+       K K +    DL+    +I  V F++  + +++ +  K 
Sbjct: 735 VKSILALQDENAQLKKQLEALLKDKAKNMKADLAKELQEINGVQFLAKQV-DLNPEGAKD 793

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGG 869
           +   L     + + ++   + E K  +   ++++++     NA  + R   K + GGG G
Sbjct: 794 LAYELGGSY-NNLFVVFATAHEGKPMLTCYISKEIVASKNLNAGQVVRELGKYIQGGG-G 851

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G+P  A +GG N +   +A+A    F+K
Sbjct: 852 GQPFFATAGGKNVDGIGEALAKAVDFVK 879


>gi|326496549|dbj|BAJ94736.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 981

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/927 (35%), Positives = 493/927 (53%), Gaps = 71/927 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  +IR  FL+F+   GH++LPSSSL+P +DPT+  T +GM+ FK IF G+E       T
Sbjct: 84  SGDAIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCAT 142

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI+ AW+L TKE+ L  
Sbjct: 143 TSQKCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKDAIKWAWELTTKEYGLPP 198

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+I+V+++D+E F +W    G+  ++I R+  +DNFW+   TGPCGPCSE+++D    
Sbjct: 199 ERLWISVFEDDDETFSIWLNEVGVPKERIKRMGEDDNFWTSGATGPCGPCSEMYYDFHPE 258

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G L     +  R+IE +NLVFMQ+ + +      L + +IDTGMGLERMA +LQ   N
Sbjct: 259 -RGSLNADLNDDSRFIEFYNLVFMQYNKNDDGSLEPLKQKNIDTGMGLERMARILQNVPN 317

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +++ +  +  + Y   +     N +VI DH+R+  +LI+DG++P+N GRGY
Sbjct: 318 NYETDLIFPIMEKAASMALVSYSKADDAMRTNLKVIGDHMRAVVYLISDGVIPSNIGRGY 377

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHL--------LPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RR +   RL+G       +            + +      P++   +  I   L
Sbjct: 378 VVRRLIRRVVRTGRLIGMRGDGHENSEGAVLPSLAETVISLSSEIDPDVESRRKSILGEL 437

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQDIL 405
           + E+ RF +TL RG  LLD +L              L+G   F LYDT+G P++I  +I 
Sbjct: 438 QREELRFVQTLGRGEKLLDELLDEALGSAGDIGVPCLSGKDVFLLYDTYGFPIEITAEIA 497

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  ID+  F+  +E QR +++A    +      +    + +    T+F+GY+ L  
Sbjct: 498 SERGVT-IDMKGFDIEMENQRKQSQAAHNVIKLSVGNET--EIVKSIPDTEFLGYESL-- 552

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  +++VK ++  G  VE    G  VE++ D+TPFYAE+G
Sbjct: 553 ---------------------FATAVVKGLLINGSPVENVSEGTDVEILLDRTPFYAESG 591

Query: 526 GQLGDTGCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           GQ+GD G               ++I DVQK    IFVH   +++G +     +   +D +
Sbjct: 592 GQVGDNGFLYVYEEEGGKQNAVIEIKDVQKSLGNIFVHKGTIKQGSIEVGKKIDAAVDGK 651

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+    +H+ATHLL  AL +++GS  SQ GS +  D LRFD +  +P+T  EL  IE  
Sbjct: 652 LRQGAKAHHTATHLLQSALKSVIGSETSQAGSLVAFDRLRFDFSFHRPLTEKELLEIESL 711

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I+    + T +M  +DA  +GA A+ G KY ++VRVV V        S  LCGGTH
Sbjct: 712 VNQWISDATHLETNVMALQDAKNAGATAMFGEKYGEQVRVVEVPG-----VSMELCGGTH 766

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           VS+T EI    I+SE  I +G+RRIEA+ G     ++  +D  ++ L S LKV   +V  
Sbjct: 767 VSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCSRDNYMRHLCSSLKVKAEDVNS 826

Query: 759 RVEEIWEEYR-------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
           RVE I EE R        L+   A  K           +  +V  +   + +VD+  LKS
Sbjct: 827 RVETILEELRTARNESSSLRSKIAVLKAASLASKAVLVEPHNVRILVENMGDVDADGLKS 886

Query: 812 VMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGG 869
             + L   +Q    ++L     + K S++   +  ++     A       AK+ GGGG G
Sbjct: 887 AAEHLVGTLQDPAAVILGSSPGDGKVSLVAAFSPGVVKMGVQAGKFVGGIAKLCGGGG-G 945

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G+P+ AQ+GG        A+    + +
Sbjct: 946 GKPNFAQAGGRKPENLPDALEKARAEI 972


>gi|297562016|ref|YP_003680990.1| alanyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846464|gb|ADH68484.1| alanyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 888

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/921 (34%), Positives = 483/921 (52%), Gaps = 62/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL FF+KNGH ++PS+SLI   DPTL+   +GMVPFK  F GQ  P +   
Sbjct: 1   METAEIARRFLSFFEKNGHTVVPSASLIAE-DPTLLLVPAGMVPFKPYFLGQRTPPHDTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VG+T+RH TFF+MLGNFSFG YFKERAI LAW+L+T      
Sbjct: 60  TSVQKCIRT----KDIEEVGKTSRHATFFQMLGNFSFGDYFKERAIPLAWELVTTPVEEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +D  RL++TVY +D+EA  +W+   G+  ++I R+   +N+W M   GPCGPCSEIF
Sbjct: 116 GFGIDPERLWVTVYLDDDEAEAIWRDKVGVRPERIQRMGKEENYWDMGVPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLE 231
           +D+G    G   G   + +RYIEIWNLVFMQ+E+     +       LPK +IDTG+GLE
Sbjct: 176 YDRGPEY-GVDGGPEADEDRYIEIWNLVFMQYERGEGSGKEYPILGELPKKNIDTGLGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289
           R+A VLQ   N Y+ D+   ++  + ++TG +Y  N   +   RV+ DH+RS+  L+ DG
Sbjct: 235 RLAAVLQGVDNIYETDIIGRVLHRAAELTGTRYGDNQEQDVMLRVVADHVRSAVMLVGDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLL-GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           + P NE  GYVLRRI+RR++   RLL G     +  L       M   YP+L+    +I 
Sbjct: 295 VRPGNEKAGYVLRRILRRSIRNLRLLSGTETAFLHELTEVSIDAMKDIYPDLLDRADVIH 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
             + +E+  F +TL  G  L              + +G  AF+L+DT+G P+D+  ++  
Sbjct: 355 GVIDTEERNFAETLRAGTALFGRAAERTRAGGGTVFSGTDAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D  SF + ++ Q+  A+A +     G  +  ++  + E  G T F+GY     
Sbjct: 415 EQGLS-VDESSFRELMQRQKDTAKADARSKKLGNADISLYARMLEGAGETDFLGYTESES 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S VK IV  G     A +G KVE+V D TPFYAE+G
Sbjct: 474 -----------------------ESRVKGIVVDGVSAPAARAGDKVEIVLDSTPFYAESG 510

Query: 526 GQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL DTG   +     + + DVQK   G+FVH   V  G +  + ++   ID   R  + 
Sbjct: 511 GQLADTGTLTVDGRGVVDVEDVQKPLPGLFVHRGTVRSGEVVLDDTVHAGIDTGRRHAIE 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +HSATHL+H AL   LG    Q GS   P  LRFD T    +    L  +E+ VN ++A
Sbjct: 571 RSHSATHLIHSALRNALGPSAGQAGSENRPGQLRFDFTADSALGGERLAEVEEEVNTVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            ++PV T   + ++A+ +GA A+ G KY DRVRVV +       +S  LCGGTHV ST  
Sbjct: 631 GDIPVQTEEKSLDEALKTGAMAMFGEKYGDRVRVVEM-----SDYSVELCGGTHVPSTAR 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + ++ ++ ESSI +G+RR+EA  G  A   L  +   +  L+  LK  +  +  R++ + 
Sbjct: 686 LGIVKLLGESSIGSGVRRVEAAVGVDAFRRLSKESTLVGQLSEQLKTPREELPERIDSMV 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVDSKELKSVMDALQK 818
              R  +    K +    ++                   +         +L+ ++  ++ 
Sbjct: 746 SRLRAAEREIEKLRAAQVLQAAGSIAEGARRHGAALVVAAPAPEGASGDDLRKLVLDVRG 805

Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++      ++ +  + K++   V+            A +L  ++A+ LGGGG GG+P +A
Sbjct: 806 RLGEDEPAVVAMTAVPKDRPVVVIATNKAAQKAGIKAGELVGIAARALGGGG-GGKPDIA 864

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG +  K D+A+  V   +
Sbjct: 865 QGGGSDATKVDEALRAVEERV 885


>gi|298229736|ref|ZP_06963417.1| alanyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254206|ref|ZP_06977792.1| alanyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502666|ref|YP_003724606.1| alanine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238261|gb|ADI69392.1| alanine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
          Length = 872

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 491/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVTQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    +  +   FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEGTTSLIFAETP-FYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|303254539|ref|ZP_07340643.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|301802125|emb|CBW34861.1| alanyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302598507|gb|EFL65549.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS455]
          Length = 872

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    +  +   FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEGTTSLIFAETP-FYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|322376246|ref|ZP_08050739.1| alanine--tRNA ligase [Streptococcus sp. M334]
 gi|321282053|gb|EFX59060.1| alanine--tRNA ligase [Streptococcus sp. M334]
          Length = 872

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/918 (35%), Positives = 497/918 (54%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--KDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     ++F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESRF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYEASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++       +KA      H +     L       LTID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVAIVTNVQKAPNGQALHTVEVLAPLALNQEYTLTIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|260911261|ref|ZP_05917862.1| alanine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634634|gb|EEX52723.1| alanine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 873

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/920 (35%), Positives = 488/920 (53%), Gaps = 75/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F +FF+  GH++  S+ ++  +DPTLMFTN+GM  +K+I  G   P  + 
Sbjct: 1   MMTANEIRESFKQFFEGKGHKIEASAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK  AI  AW+ L     L
Sbjct: 61  RADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKREAIDYAWEYLVDVLHL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + + +Y+TV++         D+EA + W K   L AD II    +DNFW M ETGPCGPC
Sbjct: 121 NPQDIYVTVFEGSEEEGIARDDEAAEYWSK--HLPADHIINGNKHDNFWEMGETGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    +++  + IEIWN+VFMQF +++      LP   IDTGM
Sbjct: 179 SEIHLDSRSAKEKAEVPGANLVNKDNPQVIEIWNIVFMQFNRKSDGSLQPLPMHVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +IQ   +++G+KY  +    V  RV+ DHLR+ +F I
Sbjct: 239 GFERLVRSLQGKTSNYDTDVFQPVIQEISRLSGLKYGTDEKVDVAMRVVADHLRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP N   GYV+RRI+RRA+ YA   LG     M  LLP    EMG AYPEL   + 
Sbjct: 299 ADGQLPGNAKAGYVIRRILRRAVRYAYTFLGQRSAFMFKLLPTFIHEMGEAYPELKAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI   ++ E++ F +TL++G+ +L+  +         +L+G  AF+L+DT+G PLD+ + 
Sbjct: 359 LIGRVMKEEEDSFLRTLEKGISMLNDEMERLKAEGKTMLDGAQAFRLFDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I    GL  +D   F+  +++Q+ RAR       +      W  L+E  G   F+GYD  
Sbjct: 419 ICRENGL-QVDAAQFDVEMQKQKERARNA-----AAVENSDWVVLRE--GEQTFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +K                                E+V D TPFY E
Sbjct: 471 EYECHILRYRQVTQKKNTY----------------------------FELVLDYTPFYGE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G  +     + + D +++          V+      E   +  +D   R   
Sbjct: 503 MGGQVGDCGVLVNGEETVDVIDTKRENNQSIHI---VKALPKAPEADFMACVDTDKREAS 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLL +AL  +LG HV Q GS + PD LRFD +H + +T  EL+ +E  VND+I
Sbjct: 560 AANHTATHLLDYALKAVLGEHVEQKGSLVAPDTLRFDFSHFQKVTDEELREVERLVNDLI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            Q+LP+   R    E+A A GA AL G KY D VRVV          S   CGG H  ST
Sbjct: 620 RQDLPLDEHRDTPVEEAKAMGAVALFGEKYGDTVRVVRFGP------SCEFCGGIHARST 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I +  IVSESS+ AGIRR+EA+TG+R    +   ++ L+ + +    +  ++ G + +
Sbjct: 674 GRIGMFKIVSESSVAAGIRRVEALTGKRCEEAMYVLEDTLRGIRNLFN-NAKDLQGVIAK 732

Query: 763 IWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE+  ++    K   Q      +    +   +  +  +  ++  +++++ K+++  ++
Sbjct: 733 YMEEHDAMRKEIEKFSAQAVERLKDSLVANAKDVNGLKVVKAVLP-INAEQAKNLVFKVR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875
           + I   ++ +VG +   K  + I+ ++D++     NA  + R +AK++ GG GGG+PH A
Sbjct: 792 EAIPQNLVCVVGSTANDKPLLSIMFSDDVVSEHGLNAGQIIREAAKLIQGG-GGGQPHYA 850

Query: 876 QSGGPNGNKADQAIAGVASF 895
            +GG N +    A+      
Sbjct: 851 SAGGKNLDGISVAVDKAVEL 870


>gi|308177509|ref|YP_003916915.1| alanine-tRNA ligase [Arthrobacter arilaitensis Re117]
 gi|307744972|emb|CBT75944.1| alanine-tRNA ligase [Arthrobacter arilaitensis Re117]
          Length = 896

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/919 (35%), Positives = 492/919 (53%), Gaps = 68/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +++FF   GH  +PS+SL+   DP+L+FT +GMVPF    T +E+  Y   
Sbjct: 1   MKTQEIARRWVDFFVSKGHTAVPSASLVSA-DPSLLFTVAGMVPFIPYLTAREEAPYSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R G    D++ VG+T RH TFF+M GNFSFG YFK+ AI  AW+LLT      
Sbjct: 60  TSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKKEAIHFAWELLTSSLEDG 115

Query: 118 -FDLDQRRLYITVYDE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + LD+ RL++TVY++    D EA ++W+   G+ A++++     DN+W+  + GP GPC
Sbjct: 116 GYGLDKERLWVTVYEDGDEKDTEARRIWEDEIGMPAERVVGTGKEDNYWNTGQPGPGGPC 175

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDT 226
           SEI++D+G    G   G + +  RY+EIWNLVFMQ+       + +      LPK +IDT
Sbjct: 176 SEIYYDRGPAY-GMEGGPAVDETRYVEIWNLVFMQYRLSAVRSKTDFDVAGELPKRNIDT 234

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVD 277
           G+GLER+A +LQ   N Y+ D  + ++  + ++  + Y                 R+I D
Sbjct: 235 GLGLERLAMILQGVENMYETDQVRPVLDKAAELASVTYTSTEDPADPNHATDVRLRMIAD 294

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H+RSS  LI+D + P NEGRGYVLRR++RRA+   RL+G    ++  LLP     M   Y
Sbjct: 295 HIRSSLMLISDQVTPGNEGRGYVLRRLIRRAVRAMRLMGVDSEVLPELLPVSRDAMKGVY 354

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGL 396
           PE+      I     +E+  F +T+  G   LD  L H  ++   L+GD AF L+DT+G 
Sbjct: 355 PEVEADFERIARIAYAEERAFRRTIASGTTRLDEALGHAKEEGKNLSGDDAFALHDTYGF 414

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+  +I    GL+ +D   F + + EQR+RA+  +    +G  +   ++   + G   
Sbjct: 415 PIDLTLEIAAEAGLS-VDEPRFRELMNEQRTRAQKDAKAKKAGHADLSVYNKLAEAGNVH 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F GYD L G                        S ++ I++ G++V  A  GQ++++V +
Sbjct: 474 FTGYDTLEG-----------------------ESSIRGIIRDGQLVPFAEQGQEIDLVLN 510

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +TPFYAE+GGQ GD+G   GDG  L++TDVQ   +G+ VH  +V  G L  E  +   +D
Sbjct: 511 ETPFYAESGGQAGDSGLITGDGFVLEVTDVQAPVKGLNVHKVVVREGELPAEALVRTQVD 570

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR     HSATHL+H AL  +LG   +Q GS      LRFD + ++ +++A    +E
Sbjct: 571 AMRRRSGEQAHSATHLVHAALRELLGPTATQAGSFNKAGYLRFDFSWAEALSAAARSEVE 630

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           + VN  I  N  VVT  M   +A   GA +L G KY++ VRVV +     G  S  LCGG
Sbjct: 631 EVVNLAITSNYQVVTNEMALSEAKKLGAMSLFGEKYSNDVRVVEM----NGDWSRELCGG 686

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV +T  I  L ++SE+S+ +G RR+EA+ G  A  H   +   +  L+   +V    V
Sbjct: 687 THVDTTARIGQLTLLSEASVGSGNRRVEALVGMEAFRHGAAERALVSELSGLFRVPSSQV 746

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVD-SKELK 810
             RV +   + +  +   A+ K Q  +   +        I     ++H    +D +  L+
Sbjct: 747 SERVNDTVAKLKAAEKQIAELKSQAMLAQSAALLEKVVTIGSTRLLAHNAGAIDSADALR 806

Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           ++   L+ K+ S   +I+L+G++  +   + +   E   + F A  L R +  VLGGGG 
Sbjct: 807 TMALDLRGKLGSEAAVIVLIGVANGRPLVLAVTNDEARANGFKAGALVRTATGVLGGGG- 865

Query: 869 GGRPHMAQSGGPNGNKADQ 887
           GG+  MAQ GG + +K D 
Sbjct: 866 GGKDDMAQGGGQDASKIDD 884


>gi|225017450|ref|ZP_03706642.1| hypothetical protein CLOSTMETH_01377 [Clostridium methylpentosum
           DSM 5476]
 gi|224949860|gb|EEG31069.1| hypothetical protein CLOSTMETH_01377 [Clostridium methylpentosum
           DSM 5476]
          Length = 879

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/910 (35%), Positives = 512/910 (56%), Gaps = 54/910 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL FF+  GH  L S  LIP  D +L+  NSGM P K  F GQE P  + VTT
Sbjct: 6   LNELREKFLSFFESKGHTRLKSYPLIPQGDNSLLLINSGMAPMKKFFLGQEVPPNKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH T+FEMLGNFSFG YFK  A + AW+ +TKE +L   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKHEATEWAWEFVTKELELPID 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           R+++++Y +D+EAF++W K  G+    I+R+   DNFW +  +GPCGPCSE++FD+GE  
Sbjct: 122 RIWVSIYQDDDEAFEIWTKERGVDPSHIVRMGKEDNFWEIG-SGPCGPCSELYFDRGEDK 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +R++E WNLVF QF    +     +   +IDTGMGLER+A ++QE  
Sbjct: 181 GCGSPDCRVGCECDRFVEFWNLVFSQFNGDGEGHYEPMEHPNIDTGMGLERLACIMQEVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  ++++    ++ G+KY+ +    V  RVI DH+RS++F+I DG++P+NEGRGY
Sbjct: 241 NLFEVDTVQNIMNHISEIAGVKYKQDPKVDVCLRVITDHIRSTTFMIGDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA    + LG  +P +  ++  +  E  SAYPEL +    I++ +R+E+E F 
Sbjct: 301 VLRRLLRRAARNGKQLGIRDPFLYKVVDTVIAENKSAYPELEENADYIKKIVRAEEENFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           KT+D+G+ LL+ ++  +  +   +IL+G+ AFKLYDT+G P+D++++I+  +G   +D  
Sbjct: 361 KTIDKGMELLNNIIDSIDSNIESKILSGEQAFKLYDTYGFPIDLIKEIISEQG-IDVDEA 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + + EQ++RAR   L   +       + + ++   T+F+GY+               
Sbjct: 420 RFRELMNEQKTRAREAKLNSDTVGWSSENYHITDE--PTEFVGYETYE------------ 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + +  I+ +    EEA  G +V +VFD+TPFYAE+GGQ+GD G  + 
Sbjct: 466 -----------CDAKLLHILTEDGEAEEAKEGDRVNLVFDRTPFYAESGGQVGDRGVFVI 514

Query: 537 DGIRLQITDVQKKAEGIF-VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               + I D QK   G   +H  +V  G ++  ++  L+ID   R   + NH+A HLL  
Sbjct: 515 GNSVVNILDCQKDPSGQHSLHLGLVMAGSIQKGVTGHLSIDGLKRDATARNHTAAHLLQK 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LGSHV Q G  +  + LRFD  H + +T  EL ++E  VN  I + + V T  M+
Sbjct: 575 ALRDELGSHVHQAGQLVDSERLRFDFNHFEAMTPQELLNVEQAVNAKILEAVKVTTSEMD 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A A GA AL G KY D VRVV     D   +S  LCGGTHV +T ++ L  I+SESS
Sbjct: 635 IESARAQGAMALFGEKYGDIVRVV-----DADGYSVELCGGTHVDNTSKLGLFKIISESS 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIH 774
             AGIRRIEA TG      +   +  + +    LKV +   +  R + + +E +      
Sbjct: 690 AAAGIRRIEATTGTGVLGLMQEGNLLIAAACGALKVTNPHELPARCKALNDELKAKDRKI 749

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +   ++    +        ++  V  +S   + +  + L+++ D ++ +    + +L  
Sbjct: 750 DELNQKIASTQMQNVFDTATEVNGVRVISASFNGMTVQALRAMGDRIK-ENPLNVAVLAN 808

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I+ + K +++ V  ++ + R  +A ++ R  A + GG G GGRP  A +G     + D+A
Sbjct: 809 IA-DGKGNLIAVCGKEAVARGAHAGNIVREIAALAGGKG-GGRPDSAMAGVTEIFQIDEA 866

Query: 889 IAGVASFLKK 898
           +  + S ++K
Sbjct: 867 LTQLTSVVQK 876


>gi|150025983|ref|YP_001296809.1| alanyl-tRNA synthetase [Flavobacterium psychrophilum JIP02/86]
 gi|205830094|sp|A6H0Y3|SYA_FLAPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149772524|emb|CAL44007.1| Alanine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 887

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/934 (34%), Positives = 476/934 (50%), Gaps = 85/934 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L+FF+  GH ++PS+ ++  +DPTLMF NSGM  FK  F G   P    +
Sbjct: 1   MTSKEIRQQYLKFFESKGHLIVPSAPIVLKDDPTLMFNNSGMAQFKEYFLGNGTPKSPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL++VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           ++ LY++V++         D+EA+ +WK +  +  D+II     DNFW M + GPCGPCS
Sbjct: 121 KQNLYVSVFEGSKEDNVPFDQEAWDIWKGL--IDEDRIILGNKKDNFWEMGDQGPCGPCS 178

Query: 174 EIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D      +    G    + +  + +EIWN VFM+F ++       LP   +DTGMG
Sbjct: 179 EIHVDLRTPEEKAQVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDH 278
            ER+   LQ KT+NYD D+F  LI+   Q+TG KY  N + N            RVIVDH
Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIEKVTQITGYKYTSNEVKNISEEQNKTNIAIRVIVDH 298

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
           +R+ +F IADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L ++MG  +
Sbjct: 299 VRAVAFAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLDTKEPFITKLVAVLASQMGEFF 358

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+   + L+   +R E+  F +TL++GL LLD V++     E+ +G  AF+LYDT G P
Sbjct: 359 PEIKSQQQLVTNVIREEEASFLRTLEQGLQLLDKVVAETKGKEV-SGAKAFELYDTFGFP 417

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   IL  +G   +D   FN A++EQ++R+RA      S    + W  L      T F
Sbjct: 418 IDLTALILREKGYE-LDEAGFNAAMQEQKNRSRAA-----SEVFTEDWSVLIPGNIET-F 470

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GYD       +   RK                           V     G   ++V D 
Sbjct: 471 VGYDKTENDVKITRIRK---------------------------VNSKKDGILYQIVLDN 503

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQ------ITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           TPFY E GGQ+GD G  +               D+    +   +     ++     E   
Sbjct: 504 TPFYPEGGGQVGDKGTLVSANDSSDSEQAKQTIDIIDTKKENNLILHFAKQLPENIETGF 563

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           V  ++   R   S NHSATHL+H AL +ILG+HV Q GS + PD LRFD +H   ++  +
Sbjct: 564 VAKVNTNLRASTSKNHSATHLMHLALRSILGTHVEQKGSLVNPDYLRFDFSHFSKVSDDQ 623

Query: 632 LKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           L+ +E +VN  I   L +   R +  ++A+  GA AL G KY D VR++          S
Sbjct: 624 LRQVEASVNAQIEAQLQLTEHRNIPIKEALDKGAMALFGEKYGDNVRMIEFGE------S 677

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGG HV +T +I    I+SE ++ AGIRRIEAITG   ++    Q+  L  +   LK
Sbjct: 678 KELCGGIHVKNTAQIWHFKILSEGAVAAGIRRIEAITGDAVKAFYTNQENTLSEIKEVLK 737

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVD 805
               +++  V  + ++  KL+    +   +      N       +I  +NF+S  + ++ 
Sbjct: 738 -KPQDILKSVTSLQDDNVKLKKQIEQLLKEKIEGLKNTLVSEFQEINGINFLSKQV-DLS 795

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL 863
               K ++ AL     +  ++L  I +E   ++   + ++L+     NA  + +   K +
Sbjct: 796 MSSTKDLLQALGSLKPNSFVVLASI-EENMPNIHCYIAKELVAGKGLNANVVIKELGKYI 854

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG+P  A   G N +   +A+     F+K
Sbjct: 855 E-GNGGGQPFFASGKGKNVSGIKEALQKAIEFVK 887


>gi|31793738|ref|NP_856231.1| alanyl-tRNA synthetase [Mycobacterium bovis AF2122/97]
 gi|121638440|ref|YP_978664.1| alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990934|ref|YP_002645621.1| putative alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260205877|ref|ZP_05773368.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289575263|ref|ZP_06455490.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis K85]
 gi|41018172|sp|Q7TYB1|SYA_MYCBO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830151|sp|A1KLQ3|SYA_MYCBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|31619332|emb|CAD94770.1| PROBABLE ALANYL-TRNA SYNTHETASE ALAS (ALANINE--TRNA LIGASE)
           (ALANINE TRANSLASE) (ALARS) [Mycobacterium bovis
           AF2122/97]
 gi|121494088|emb|CAL72566.1| Probable alanyl-tRNA synthetase alaS [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224774047|dbj|BAH26853.1| putative alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289539694|gb|EFD44272.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis K85]
          Length = 904

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/932 (35%), Positives = 482/932 (51%), Gaps = 72/932 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G            E  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG+
Sbjct: 176 YDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRNNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A VLQ+  N Y+ DL + +I    +V    Y      + V +R+I DH R+++ LI 
Sbjct: 235 ERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I
Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+  F +TL  G  L + V S        +L+G  AF L+DT+G P+++  ++ 
Sbjct: 355 SRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR 
Sbjct: 415 AETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQ 517
                                   + +  I   G+ V          A  GQ+VE+V D+
Sbjct: 474 -----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDR 510

Query: 518 TPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           TP YAE+GGQ+ D G   G    +  R  +TDVQK A+ ++VH   VE G      +++ 
Sbjct: 511 TPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIA 570

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +  
Sbjct: 571 AVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRT 630

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S  L
Sbjct: 631 QVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLEL 686

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV  
Sbjct: 687 CGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPS 746

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSK 807
             V  RV  + E  R  +    + ++               +I +V  ++  +S  + + 
Sbjct: 747 EEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAA 806

Query: 808 ELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864
           +L+S++  ++ K+ S   ++ L+   + +     +       D    A DL +  A  + 
Sbjct: 807 DLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE 866

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G GGG+  +AQ  G N    D A+  V S +
Sbjct: 867 -GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 897


>gi|145224345|ref|YP_001135023.1| alanyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|315444677|ref|YP_004077556.1| alanyl-tRNA synthetase [Mycobacterium sp. Spyr1]
 gi|205830152|sp|A4TBW4|SYA_MYCGI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145216831|gb|ABP46235.1| alanyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|315262980|gb|ADT99721.1| alanyl-tRNA synthetase [Mycobacterium sp. Spyr1]
          Length = 898

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/915 (34%), Positives = 477/915 (52%), Gaps = 72/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P +   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D+D VG T RH+TFF+M GNFSFG YFK+ AI+LAW LLT      
Sbjct: 60  TSVQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIELAWSLLTNPVSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL+ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPERLWATVYLDDDEAIELWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPCSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMG 229
           +D+G      G P ++E+  RYIEIWNLVFMQ E+       + +    LP+ +IDTGMG
Sbjct: 176 YDRGPDYGIDGGPEANED--RYIEIWNLVFMQNERGEGTSKDDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL + +I     +    Y      + V +R+I DH R+++ +I
Sbjct: 234 VERIACLLQGVDNVYETDLVRPVIDLVAGIAPRGYGQGNHTDDVRYRIIGDHSRTAAIII 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGYVLRR++RR +  A+LLG  +P+M  L+  +  EMG +YPEL+     
Sbjct: 294 GDGVTPGNEGRGYVLRRLLRRIIRAAKLLGVEQPIMGELMATVRDEMGPSYPELVTDFER 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L +       K    +L+GD AF L+DT G P+D+  ++
Sbjct: 354 INRIAIAEETAFNRTLTAGSRLFEDAAETTRKAGSTVLSGDDAFTLHDTFGFPIDLTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL+ +D   F   + EQR RA+A +       T+   +      G T+F G+D L 
Sbjct: 414 AAEAGLS-VDEEGFRGLMAEQRRRAKADAAARKQAHTDLSAYRELVDAGPTEFTGFDEL- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ------KVEVVFDQT 518
                                    + +  I   G  V      Q      +VE++ +++
Sbjct: 472 ----------------------TTEARILGIFVDGRRVPVVSHVQGGDAPGRVELILNRS 509

Query: 519 PFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           PFYAE+GGQ+ D G   G       +  +TDVQK A+ ++ H   VE G      ++V  
Sbjct: 510 PFYAESGGQIADEGTVTGTGASQTAKAAVTDVQKIAKTLWAHRITVESGEFVEGDTIVAA 569

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D + R   +  HS TH++H AL  +LG +  Q GS   P  LRFD      ++  +   
Sbjct: 570 VDPRWRHGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALSDDQRSQ 629

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE+  N+ +  +  V       E A + GA AL G  Y D VRVV +    GG  S  LC
Sbjct: 630 IEEVTNEAVEADYEVHNFTTELEKAKSMGAMALFGENYPDEVRVVEI----GGPFSIELC 685

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV S+ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV   
Sbjct: 686 GGTHVRSSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSD 745

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKE 808
            V  RVE + E  R  +    + +L               +I  +  ++  ++  + + +
Sbjct: 746 EVPARVENLVERLRAAEKELDRLRLVNARAAAANAAAGAEQIGGIRLVAQRMAGGISAGD 805

Query: 809 LKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
           L+S++  ++ K+ S   ++ L+  + +     ++ V +   DR   A DL ++    +  
Sbjct: 806 LRSLVGDIRGKLGSDPAVVALISEADDDTVPFVVAVNQAAQDRGLRANDLVKVLGAAVN- 864

Query: 866 GGGGGRPHMAQSGGP 880
           G GGG+  +AQ  G 
Sbjct: 865 GRGGGKADLAQGSGK 879


>gi|289167595|ref|YP_003445864.1| alanyl-tRNA synthetase [Streptococcus mitis B6]
 gi|288907162|emb|CBJ21996.1| alanyl-tRNA synthetase [Streptococcus mitis B6]
          Length = 872

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESHF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNTEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTADELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKTPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  + + K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENTELKEKAASAAAGDIFKDVKEVNAHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|225860836|ref|YP_002742345.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|225727156|gb|ACO23007.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389569|gb|EGE87914.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
          Length = 872

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 491/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVTQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGNIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    +  +   FYAE G
Sbjct: 462 ----------------NHNASQLSSKLVAIVADNAEVEAVSEGTTSLIFAETP-FYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|307701921|ref|ZP_07638930.1| alanyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616736|gb|EFN95924.1| alanyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 872

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/918 (35%), Positives = 496/918 (54%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVDVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILGSH +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGSHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|317124715|ref|YP_004098827.1| alanyl-tRNA synthetase [Intrasporangium calvum DSM 43043]
 gi|315588803|gb|ADU48100.1| alanyl-tRNA synthetase [Intrasporangium calvum DSM 43043]
          Length = 890

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/924 (35%), Positives = 505/924 (54%), Gaps = 64/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF+  GH ++PS+ L+  +DP L+F N+GMVPFK  F GQE P Y   
Sbjct: 1   METAEIRRRWLSFFESRGHTVVPSAPLV-HDDPNLLFVNAGMVPFKPYFLGQETPPYARA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE A+ LAW+L+T      
Sbjct: 60  TSVQKCVRTL----DIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAVALAWELVTTPQSQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D++ LY +VY ED+EA  +WK+++GL  D+I+R+   DN+W+M   GP GPCSEI 
Sbjct: 116 GYGFDEKDLYASVYHEDDEAIAIWKRVAGLPDDRIVRLGKKDNYWNMGVAGPGGPCSEIL 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
            D+G          + +  RY+E WNLVFMQ +      + +      LPK +IDTGMGL
Sbjct: 176 IDRGPEFGADRDWEAGD--RYLEFWNLVFMQDDLSAVRAKDDFDIAGPLPKRNIDTGMGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I A+E+++G +Y     + V  RV+ DH+RS+  LI D
Sbjct: 234 ERVAYLLQGVDNLYEIDEVFPVIAAAEELSGRRYGANLEDDVRFRVVADHVRSALMLIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RRA+   RLLG   P + HLLP    +M ++YPEL +    I 
Sbjct: 294 GVTPGNEGRGYVLRRLIRRAVRSMRLLGVDAPTLEHLLPVSKDQMRASYPELERGFGRIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E++ F +TL  G  +LD  +  +       L+G  AF+L+DT+G P+D+  ++  
Sbjct: 354 QVAYAEEDAFRRTLTAGTTILDVAVTKAKSSGSATLSGSEAFQLHDTYGFPIDLTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYG-ATQFIGYDLLR 464
            +GL  +D   F + + EQR RA+A +        +  ++  + +  G   +F GYD + 
Sbjct: 414 EQGL-NVDEAGFRRLMAEQRDRAKADARSKKMAHGDVSVYRQVADSLGRDVEFTGYDEVV 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V+ +++ GE+V  A +G+++EVV D+TP YAE+
Sbjct: 473 SD-----------------------SRVRGLIRGGELVSTAHAGEEIEVVLDRTPLYAES 509

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G   + +G  +++ DVQK   G+ VH A V  G   T       +D   RR +
Sbjct: 510 GGQLADRGRIRLANGALIEVRDVQKPINGLIVHRATVLEGEAVTGDDAEAVVDVVRRRSV 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           S  H+ATH++H AL   LG   +Q GS  +P  LRFD     P+    +  IE  VN ++
Sbjct: 570 SRAHTATHMVHQALREELGETATQAGSENSPGRLRFDFKAQSPVPLEAMADIEAKVNSVL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +L V   +M+ ++A   GA AL G KY +RVRVVS+     G  S  LCGGTH    G
Sbjct: 630 LDDLAVTADVMSLDEARRMGALALFGEKYGERVRVVSI-----GDWSIELCGGTHALRVG 684

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ ++ ++ E+SI +G+RR+EA+ G  A +HL  +   +  L   LKV    +  R+  I
Sbjct: 685 QLGVVKLLGEASIGSGVRRVEALVGSDAYTHLAREAAIVGQLTDQLKVRTEELPQRIASI 744

Query: 764 WEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII-SEVDSKELKSVMDALQ 817
             + ++ +   A  K    +        +   IA V F+SH     V + +L++++  ++
Sbjct: 745 LSKLKEAEKEIAAVKQAQVLGAAPGLVATARDIAGVTFVSHDAGDGVTADDLRALVLEVR 804

Query: 818 KKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           +++ +    ++ +  +S  +   ++            A    R +A+VLGGGG GG+  +
Sbjct: 805 RRLGTDRPSLVSMAAVSNGRPIVIVATNDRAREAGLKAGLFVRTAAQVLGGGG-GGKDDI 863

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ GG + +    A+  V   L +
Sbjct: 864 AQGGGTDASMVSAALGAVEQQLHQ 887


>gi|87300751|ref|ZP_01083593.1| alanyl-tRNA synthetase [Synechococcus sp. WH 5701]
 gi|87284622|gb|EAQ76574.1| alanyl-tRNA synthetase [Synechococcus sp. WH 5701]
          Length = 896

 Score =  733 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/914 (36%), Positives = 496/914 (54%), Gaps = 59/914 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL F++  GH  + S+SL+P +DPT++ T +GM+PFK +F GQ +P     T
Sbjct: 17  SGAEIREAFLAFYEARGHRRMASASLVP-DDPTVLLTIAGMLPFKPVFLGQAEPPSPRAT 75

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK  A+  AW+L TK F LD 
Sbjct: 76  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKTEAMTWAWELATKVFGLDP 131

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ +D+EA  +W+   G+   +I+R+   DNFW    TGPCGPCSEI++D    
Sbjct: 132 KHLVVSVFRDDDEAAVIWRDTVGVDPRRIVRLGEADNFWVSGPTGPCGPCSEIYYDFKPE 191

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQF +  +     L   +IDTG+GLERMA +LQ   N
Sbjct: 192 L-GVEHLDLEDDSRFIEFYNLVFMQFNRDAEGNLTPLENRNIDTGLGLERMAQILQGAAN 250

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI+ +  + G+ Y   +     + +VI DH R+ + LIADG+  +N GRGY
Sbjct: 251 NYETDLIYPLIETAATLAGVNYRQLDARGQTSLKVIGDHSRAITQLIADGVTASNLGRGY 310

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG T P +  +  A    M  AYP+L++ +  I   L  E+ RF 
Sbjct: 311 ILRRLLRRVVRHGRLLGITTPFLTAMGEAAIALMVDAYPQLVERRDAIMAELAREEARFL 370

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VLS       ++G+ AF+LYDT+G PL++ ++I    GL  +D+  F 
Sbjct: 371 ETLERGEKLLAEVLS--AGPSQISGEQAFELYDTYGFPLELTEEIAEEHGL-AVDLAGFE 427

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR RA+A S+ L   T +    ++ E+  AT F GY+ L                
Sbjct: 428 AAMEAQRQRAKAASVRLDL-TLQGAIEAMAEQLPATDFRGYEALEHP------------- 473

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC------ 533
                     S V A+V  GE  + A +G  V++V D TPFY E+GGQ+GD G       
Sbjct: 474 ----------SQVMALVVNGEPAQGARAGDAVQIVLDSTPFYGESGGQIGDRGVLAGGAP 523

Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            A  +   +   +       + VHH  +ERG L    ++   +D   RR++  +H+ATHL
Sbjct: 524 GAGAEAGVIVRIEAVSHQRKLIVHHGRIERGELALGDTVTALVDRACRRRVQAHHTATHL 583

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++   ++Q GS +  + LRFD      I+  +L+ IE+ +N  IA    +  R
Sbjct: 584 LQAALKQLVDPSIAQAGSLVDFERLRFDFHCPHAISPEDLERIEERINGWIADAHALEVR 643

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E A ++GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IVS
Sbjct: 644 EMELERARSAGAVAMFGEKYADIVRVVDVPG-----VSMELCGGTHVANTAEIGLFRIVS 698

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AGIRRIEA+ G     +L  +D  +++L    KV  G ++ RV  + +E +    
Sbjct: 699 ESGVAAGIRRIEAVAGPAVLDYLKERDTVVRALGDRFKVQPGEILERVSGLQDELKAASR 758

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A  + +L +   S       ++     +   +  V+   L++    LQ+ + S   ++
Sbjct: 759 ALAAARSELALARASALATGALEVGAFRVLVARLDGVEGAALQTAAQQLQEGLGSAAAVV 818

Query: 828 VGI----SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +G      +  K  ++     +++     A     + AK  GGGG GGRP +AQ+GG + 
Sbjct: 819 LGGLPAPEEPAKLVLVAAFGAEVIAAGPKAGSFIAVVAKRCGGGG-GGRPQLAQAGGRDA 877

Query: 883 NKADQAIAGVASFL 896
              D A+    + L
Sbjct: 878 ASLDPALEQARADL 891


>gi|332074964|gb|EGI85436.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
          Length = 872

 Score =  733 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    +  +   FYAE G
Sbjct: 462 ----------------NHNASQLSSKLVAIVADNAEVEAVSEGTTSLIFAETP-FYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|307127048|ref|YP_003879079.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|306484110|gb|ADM90979.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
          Length = 872

 Score =  733 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T+ +SS + AIV     V     G    ++F +T FYAE G
Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|182684342|ref|YP_001836089.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|205830229|sp|B2IQK0|SYA_STRPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|182629676|gb|ACB90624.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 872

 Score =  733 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T+ +SS + AIV     V     G    ++F +T FYAE G
Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|313890705|ref|ZP_07824330.1| alanine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120806|gb|EFR43920.1| alanine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 873

 Score =  733 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/919 (34%), Positives = 482/919 (52%), Gaps = 68/919 (7%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKTLTSAEIRQMWLDFWKSKGHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y  D +++  W  + G+    +I +   +NFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPADTDSYNRWIAL-GVDPSHLIPL--EENFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           FD+G                 E +RYIEIWN+V  QF    K    E   LP  +IDTG 
Sbjct: 173 FDRGPAFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPKVPRSEYKELPSKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +IQ  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIQEVEKLSGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG TE  +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGITETFLYKLVVTVGQIMTSYYPEILEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L +   + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIIKREEETFARTIDAGSGHLDQLLTQLKEAGKDTLEGKDIFKLYDTYGFPIELTEEMA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   +D   F  A++EQ+ RARA  +  GS   +    +L      ++F        
Sbjct: 413 EDAGYR-VDHEGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEPSEF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + + +  I+   E  E    GQ   +VFD+TPFYAE G
Sbjct: 462 ----------------SYQEETLDAKLSVIIVDNERSEMVSEGQ-ALLVFDRTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G        +       +KA      H +     L       L ID++ R  + 
Sbjct: 505 GQVADHGLIKNAAGDVLAKVVDVQKAPNGQALHTVEVLASLSINAIYTLDIDHKRRYAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I 
Sbjct: 565 KNHTATHLLHAALHKVIGQHATQAGSLNEETFLRFDFTHFEAVTAEELRRIEEEVNQQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L V T   + + A + GA AL G KY   VRVV++     G +S+ LCGGTH+ +T E
Sbjct: 625 NALSVTTVETDVDTAKSMGAMALFGEKYGKLVRVVTI-----GDYSAELCGGTHLGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TGQ+A      +++ LK +A+ LK  Q   V  +V  +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILALTGQQAFEAFRQREDALKEIAANLKAPQLKEVPAKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R LQ  + + K +              K     +++  ++  D+  L++  D  ++
Sbjct: 740 SEQVRDLQKENHELKEKAAAAQAGDLFKDVKKANGHTYIATEVAVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    E K +VL+   +      +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGE-KVNVLVASRDKA---VHAGNLIKSLAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFLK 897
           G +  +    +  V   LK
Sbjct: 855 GSDAGQIQALLLAVPELLK 873


>gi|168491286|ref|ZP_02715429.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183574430|gb|EDT94958.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
          Length = 872

 Score =  733 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +T FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|323344880|ref|ZP_08085104.1| alanine--tRNA ligase [Prevotella oralis ATCC 33269]
 gi|323094150|gb|EFZ36727.1| alanine--tRNA ligase [Prevotella oralis ATCC 33269]
          Length = 873

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/921 (34%), Positives = 501/921 (54%), Gaps = 73/921 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++ +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKQPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L +   L
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVEVLHL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+T+++         D+EA + W K   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYVTIFEGSPEENIPRDDEAARYWAK--HLPTDHIIEGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           +EI  D    + +    G    +++  + IEIWN+VFMQF ++      +LP   IDTGM
Sbjct: 179 TEIHVDSRTPEEKAKVPGRELVNKDNPQVIEIWNVVFMQFNRKADGSLELLPMHVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLI 286
           G ER+  +LQ K +NYD D+F+ +I+   +++G KY  +  +    RV+ DHLR+ +F I
Sbjct: 239 GFERLVRMLQGKHSNYDTDIFQPIIREISRLSGKKYGEHEDIDVAMRVVADHLRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ Y+   L   E  M  LLP L  EMG+AYPEL   + 
Sbjct: 299 ADGQLPSNAKAGYVIRRILRRAVRYSYTFLDQKEAFMYKLLPVLVREMGAAYPELSAQQE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQD 403
           LI   ++ E++ F +TL++G+ LL+  ++ L       L+G  AF+L+DT+G PLD+ + 
Sbjct: 359 LIARVMKEEEDSFLRTLEKGINLLNAAMNELKAAGKNCLDGAQAFRLFDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I    G   +D   F++ +E+Q++RAR  ++          W  L++  G  QF+GYD  
Sbjct: 419 ICRENGFT-VDEKQFDKEMEKQKARARNAAV-----VENGDWVVLRK--GEQQFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +K                                E+V D TPFY E
Sbjct: 471 EHECHILRYRQVTQKKNTF----------------------------FELVLDYTPFYGE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G  +    +++I D +++          V++         +  +D + R   
Sbjct: 503 MGGQVGDQGVLVNGNEKVEIIDTKRENNQSIHI---VKQLPKEPSADFMACVDTEKRDAS 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLL +AL  +LG HV Q GS ++PD LRFD +H + +T  E++ +E  VN++I
Sbjct: 560 AANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERMVNEMI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            Q+ P+   R    E+A   GA AL G KY D+VRVV          S   CGG H  ST
Sbjct: 620 RQDFPLDEHRDTPVEEAKKMGAVALFGEKYGDKVRVVRFGP------SCEFCGGIHAKST 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I +  I+SESS+ AGIRR EA+TG+         ++ LK + +    +  ++ G + +
Sbjct: 674 GRIGMFKIISESSVAAGIRRFEAMTGKMCEETYYALEDTLKDIRTLFN-NAKDLRGVIGK 732

Query: 763 IWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             EE     + ++  HA+   +   E +    I +   +   I  ++    K ++  +++
Sbjct: 733 YIEEHDLMKKDIEKFHAQTVERTKDEVIKRATIVNGTTVVRSILPIEPSAAKDLVFKIRE 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            I   ++ ++G +   K  + +++++D++     NA  + R +AK++ GG GGG+PH AQ
Sbjct: 793 AIPQNLVCVIGSTVGDKPLLSVMLSDDMVKEHHLNAGQMIREAAKLIQGG-GGGQPHYAQ 851

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG N +  + A+  V +   
Sbjct: 852 AGGKNIDGINAAVDKVIALAN 872


>gi|281492315|ref|YP_003354295.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|281375979|gb|ADA65470.1| Alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
          Length = 872

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/915 (35%), Positives = 474/915 (51%), Gaps = 67/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF+  GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  AW+LLT  + F+
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRKEAIAFAWELLTSSEWFE 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT Y  D++ +  W +  G+    ++ I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYITYYPADKDTYNRWVE-VGVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231
           GE                E +RYIEIWN+V  QF         E   LP+ +IDTGMGLE
Sbjct: 176 GEVYDPEHMGLKLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYPELPQKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGI 290
           RM  ++Q    N+D DLF  +I+  E+++G  Y   +  ++ +VI DH+RS SF I DG 
Sbjct: 236 RMVCIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  I + 
Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E+E F +T+D G  L+D +L +L  +    L G   F+LYDT+G P+++ +++    
Sbjct: 356 IDREEETFNRTIDAGQKLIDELLVNLKSEGKDRLEGADIFRLYDTYGFPVELTEELAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   ID   F  A++ Q+ RARA  +  GS   +    +L      ++F+ Y+       
Sbjct: 416 GFK-IDHEGFKVAMKAQQERARAAVVKGGSMGAQN--ETLSSIEVESEFL-YED------ 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                  +   +Q  EIV+E     K ++VFD TPFYAE GGQ+
Sbjct: 466 -----------------KTAQGKLLVAIQDDEIVDEVSG--KAQLVFDVTPFYAEMGGQV 506

Query: 529 GDTGCAIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G       ++       + A      H++     L+   S  L ID + R  +  NH
Sbjct: 507 ADHGVIKDAEGQVVANVLDVQHAPHGQNLHSVETLSPLKVGESYTLEIDKERRAAVVKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH   +T  EL  IE  VN++I Q+L
Sbjct: 567 TATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSL 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   +   A   GA AL G KY   VRVV +     G +S  LCGGTH  +T EI L
Sbjct: 627 KVETVETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIGL 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G+RRI A+TGQ+A       +  L  +A+ +K  Q   V+ +V  + +E
Sbjct: 682 FKIVKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLNEVATLVKAPQTSQVLAKVTSLQDE 741

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +  Q  +     +L          +      +NF++  ++  D+  L+++ D  ++K  
Sbjct: 742 LKTAQKENDALAGKLAASQSDEIFKNVQTAGSLNFIASEVTVPDANGLRNLADIWKQKEL 801

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK + ++   + D      A +L +  A  +  G GGG+P MA +GG  
Sbjct: 802 SDVLVLVAKIGEKVSLLVASKSSD----VKAGNLVKELAPFV-DGRGGGKPDMAMAGGSK 856

Query: 882 GNKADQAIAGVASFL 896
                + +A VA  L
Sbjct: 857 AAGIPELLAAVAEKL 871


>gi|24379123|ref|NP_721078.1| alanyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|41018215|sp|Q8CWY0|SYA_STRMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|24377026|gb|AAN58384.1|AE014908_10 putative alanyl-tRNA synthetase (alanine--tRNA ligase)
           [Streptococcus mutans UA159]
          Length = 872

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+F++   H + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQVRQMWLDFWKSKDHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDDAIKWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FDL + +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDLPKDKLYMTYYPDDKDSYNRWIE-CGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDHIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L+ L     + L G   F+LYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSNMLDQLLADLKAADKDTLEGKDIFRLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA+ +  GS   +    +L      + F        
Sbjct: 413 EDAGFK-IDHQGFQAAMKEQQERARANVVKGGSMGMQN--ETLSNITEKSTF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + S +  I+   + +E    GQ V +VF +TPFYAE G
Sbjct: 462 ----------------NYEKEALDSSLSVIIADNKRIEAVSEGQ-VLLVFSETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D    +      +KA      H +   G L    +  L ID++ R ++ 
Sbjct: 505 GQVADHGLIKNDKGDTVARVTDVQKAPNGQALHTVDVLGSLSVGTTYHLEIDHERRNRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G+H +Q GS    + LRFD TH + +T  EL+ IE+ VN  I 
Sbjct: 565 KNHTATHLLHAALHNVIGNHATQAGSLNEVEFLRFDFTHFEAVTPEELRQIEEEVNQQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + +PV T   + + A   GA AL G KY   VRVVS+     G +S  LCGGTH+ +T E
Sbjct: 625 KAIPVTTIETDLDTAKEMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHLKNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+T + A      +++ LK +A+ LK  Q   V  +V  +
Sbjct: 680 IGIFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDILKEIATTLKAPQMNQVANKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            ++  KLQ  +A+ K +              ++  + +++  +   D+  L++  D  ++
Sbjct: 740 QDQLHKLQKENAELKEKAAAVAAGDIFKDVKEVNGLRYIASQVEVADAGALRTFADKWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV  S  KK +VL+          +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVA-SIGKKVNVLVASK---SKDIHAGNLIKALAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +     IA VA  L
Sbjct: 855 GSDASAIKDLIAAVAENL 872


>gi|325268831|ref|ZP_08135456.1| alanine--tRNA ligase [Prevotella multiformis DSM 16608]
 gi|324988803|gb|EGC20761.1| alanine--tRNA ligase [Prevotella multiformis DSM 16608]
          Length = 888

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/937 (34%), Positives = 492/937 (52%), Gaps = 90/937 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
            T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L    
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++         D+EA   W+K      + I+    +DNFW M +TGPCG
Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEAAGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178

Query: 171 PCSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D           G    +++  + IEIWN+VFMQF ++       L    IDT
Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVN 271
           GMG ER+  ++Q K +NYD D+F  +I   E+++G KY                    + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYSHTFPEGPNGEGVNEEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L 
Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAF 388
            EMG+AYPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L     + L+G  AF
Sbjct: 359 REMGAAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHGRKELDGKEAF 418

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + I    G   +D   FN+ + +Q++RAR  ++          W  L
Sbjct: 419 RLFDTYGFPLDLTELICGENGYT-VDEKQFNEEMAKQKARARNAAV-----VENGDWEVL 472

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +E  G  +F+GYD       +   RKV  +K                             
Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   + + D +++          V++     E
Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDTKRENNQSIHI---VKQLPKNVE 559

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT
Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619

Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             EL+ +E  VN++I ++ P+   R    E+A   GA AL G KY D+VRVV        
Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFGP---- 675

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L +
Sbjct: 676 --SCEFCGGIHAASTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIIS 802
               +  ++   +    EE   ++    K + Q               +  V+ +  ++ 
Sbjct: 734 MFN-NAKDLKAVLTRFVEENDAMKREVEKFRAQAVDRAAKTLAERVEMVDGVHVIKAVLP 792

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSA 860
            VD    K ++  +++ +   ++ ++G   E +  + I++++D++     NA  + R +A
Sbjct: 793 -VDPASAKDIVFKVRQSLPEKLVCILGSVYEDRPQLSIMLSDDMVKEHGLNAGKIIREAA 851

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           K++ GG GGG+PH AQ+GG + +    A+  V   + 
Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDADGVSAAVDKVMELIN 887


>gi|293365697|ref|ZP_06612406.1| alanine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307703642|ref|ZP_07640584.1| alanyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316065|gb|EFE56509.1| alanine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623049|gb|EFO02044.1| alanyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 872

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 486/918 (52%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y ED++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPEDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G    + ++S L      ++ G   FKLYDT+G P+++  +I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAETIVSDLKAKGQSVIAGSDVFKLYDTYGFPVELTAEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + + S + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +     +       +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDAKGNVVANVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++AS LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVASTLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDASALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV     K   ++   T+D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGYKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|227488808|ref|ZP_03919124.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542195|ref|ZP_03972244.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091230|gb|EEI26542.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182024|gb|EEI62996.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 889

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/918 (35%), Positives = 488/918 (53%), Gaps = 61/918 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F + F   GH  +PS+SLI  +DPTL+F N+GMVPFK  F GQ+ P ++  
Sbjct: 1   MQTHEIRERFTKHFVDAGHTPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQNPPFENG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTGSQD 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              + LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGYGLDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMADNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228
           I++D+G    G   G   +  RY+E+WNLVFMQ E+       N +    LPK +IDTGM
Sbjct: 176 IYYDRGPEY-GKDGGPVADDNRYLEVWNLVFMQNERGEGTGKDNFEILGPLPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFL 285
           G+ER+A +LQ   N Y+ DL + +I A+E++TG  Y      + +  RVI DH R++  +
Sbjct: 235 GVERIACILQGVDNVYETDLLRPVIDAAERLTGSTYGEGSHEDDIRFRVIADHSRTAMMI 294

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG+ P NEGRGY+LRR++RR +  ARLLG     M   +  +   M  +YPE+ +A+ 
Sbjct: 295 ILDGVTPGNEGRGYILRRLLRRIIRSARLLGAKGNTMETFITTIMDTMTPSYPEIEKARE 354

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
            I     +E++ F +TL+ G  L +  +S         ++G+ AF L+DT+G P+D+  +
Sbjct: 355 RILTVAVNEEKAFLRTLESGTELFEQEVSAVKGAGKTEISGEKAFTLHDTYGFPIDLTLE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   +GL  +D   F+  + EQ++RA+A +     G  +   +        T+FIGYD L
Sbjct: 415 MAREQGLT-VDEEGFHSFMAEQKARAKADNQAKKHGAADLTVYREFVDNHPTEFIGYDQL 473

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G                        S V  +V  GE +  A  G +VEV+ + TP YAE
Sbjct: 474 EG-----------------------ESPVIGLVAGGEKIHSAKEGDEVEVIVEATPMYAE 510

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AGGQLGD G        L + DVQK  + +++H + V  G      +  L +D Q R   
Sbjct: 511 AGGQLGDRGTMTIGDATLNVNDVQKIGKKLWLHKSTVTAGGFEVGDTAALHVDEQWRHAA 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HSATHL+H AL   LG    Q GS   P  LRFD  +++ +T  +L+ IE   N+ +
Sbjct: 571 RQAHSATHLIHAALRQTLGPTAVQAGSMNKPGYLRFDFNYAQALTPKQLEEIERITNEAV 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +  V T  M  E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV+ + 
Sbjct: 631 DTDWTVNTNEMPLEEAKAMGAMALFGENYGDIVRVVEI----GGPFSMELCGGTHVARSA 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + ++ ESS+ +G+RRIEA +G  + S+L  +    + LA+ LK    ++  R+ ++
Sbjct: 687 QIGPVAVLGESSVGSGVRRIEAYSGLNSFSYLSKERSLAEGLATALKTPSDDLPERIAQL 746

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE-VDSKELKSVMDALQ 817
            E+ +  +        +   + +     S  K      ++  + E V +K+L+++   L 
Sbjct: 747 TEKLKAAEKEIENLHAKALADRVGALVDSAKKAGSFELIAENLGETVGAKDLRAMAQDLA 806

Query: 818 KKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++   S +++L G    K    +      +     A D+ ++  + +GG G GG+P++A
Sbjct: 807 NRLGSCSAVVVLGGSQGGKAPFAVAATAAAVDAGIKAGDVVKVIGEHVGGKG-GGKPNLA 865

Query: 876 QSGGPNGNKADQAIAGVA 893
           Q  G N      A   V 
Sbjct: 866 QGSGSNPAGFTAAFDAVT 883


>gi|306829747|ref|ZP_07462936.1| alanine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304428098|gb|EFM31189.1| alanine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 872

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 487/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y ED++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPEDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G    + +++ L      ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + + S + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +     +       +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDAKGNVVANVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++AS LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVASTLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDASALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV     K   ++   T+D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGYKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|281423902|ref|ZP_06254815.1| alanine--tRNA ligase [Prevotella oris F0302]
 gi|281401990|gb|EFB32821.1| alanine--tRNA ligase [Prevotella oris F0302]
          Length = 887

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/936 (33%), Positives = 485/936 (51%), Gaps = 89/936 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-VYQ 59
           M   + +R ++ +FF+  GH+++ S+ ++  +DPTLMFTN+GM  +K+I  G + P    
Sbjct: 1   MMTANEVRESYKKFFEGKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     
Sbjct: 61  RRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVSVLH 120

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L+   LY+TV++         D+EA   W K   + AD II    +DNFW M +TGPCGP
Sbjct: 121 LNPEDLYVTVFEGSPEEGLERDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCGP 178

Query: 172 CSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           C+EI  D    + +    G    +++  + IEIWN+VFMQ+ ++       LP   IDTG
Sbjct: 179 CTEIHVDSRTPEEKAKMPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNH 272
           MG ER+  +LQ+K +NYD D+F+ +I+  E ++G KY                    +  
Sbjct: 239 MGFERLVRMLQDKHSNYDTDIFQPIIKQIEAISGKKYGFTTPTGLNGEGKDEQEKIDIAM 298

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331
           RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  +  LLP L  
Sbjct: 299 RVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLLPVLVR 358

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFK 389
           EMG AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L       L+G  AF+
Sbjct: 359 EMGQAYPELPAQQELIARVMKEEEDSFLRTLEKGINLLNGDMDELKAHGQTELDGTSAFR 418

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           L+DT+G PLD+ + I    G   +D   FN+ + +Q++RAR  ++          W  ++
Sbjct: 419 LFDTYGFPLDLTELICREHGYT-VDEKGFNEEMAKQKARARNAAV-----VENGDWEVIR 472

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           E  G   F+GYD    +  +   RKV  +K                              
Sbjct: 473 E--GEQVFVGYDYTEYTCHILRYRKVTQKKNTF--------------------------- 503

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             E+V D TPFY E GGQ+GD G  + +   ++I D +++          V++     + 
Sbjct: 504 -YEIVLDYTPFYGEMGGQVGDQGTLVSENETVEIIDTKRENNQSIHI---VKQLPKDLQA 559

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             +  +D + R   + NH+ATHLL +AL  +LG HV Q GS + P  LRFD +H + +T 
Sbjct: 560 EFMACVDVEKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDPTTLRFDFSHFQKVTD 619

Query: 630 AELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            EL+ +E  VN +I ++ P+   R    E+A   GA AL G KY D+VRVV         
Sbjct: 620 EELRQVEKLVNKMIREDFPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFGP----- 674

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S   CGG H  STG I    I+SESS+ AGIRRIEA+TGQ     +    + +  L S 
Sbjct: 675 -SCEFCGGIHAKSTGRIGFFKIISESSVAAGIRRIEALTGQACEDTIYALQDMMNDLKSM 733

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISE 803
              +  ++   +++   E+ +++    K + Q               +  V  +  ++  
Sbjct: 734 FN-NSKDLKATLKKFIGEHDEMRKEIEKFQAQAVERTKEELLKRAQNVNGVQVIKAVLP- 791

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAK 861
           ++    K +   L++ I   +++++G +   K  + ++ ++D++     NA  + R +AK
Sbjct: 792 LEPAAAKDLAFKLRENISENLVVVIGSTAGNKPLLTVMFSDDMVKDHSLNAGTIIREAAK 851

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           ++ GG GGG+PH AQ+GG N +    A+  V     
Sbjct: 852 LIQGG-GGGQPHYAQAGGKNLDGISAAVDKVIELAN 886


>gi|239939940|ref|ZP_04691877.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 868

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/902 (36%), Positives = 491/902 (54%), Gaps = 62/902 (6%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           +PS+SLI  +DPTL+   +GMVPFK  F G+ KP    VT+VQKCVR      D++ VG+
Sbjct: 1   MPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSVQKCVRT----PDIEEVGK 55

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAF 137
           T RH TFF+M GNFSFG YFKE AIQLAW+ LT       + LD  +L+ITVY +D+EA 
Sbjct: 56  TTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDGGYGLDPEKLWITVYLDDDEAE 115

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197
           ++W+   G+ A++I R+   DNFWSM   GPCGPCSEI +D+G    G   G +   ERY
Sbjct: 116 QIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDRGPEF-GVEGGPAVNDERY 174

Query: 198 IEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           +EIWNLVFMQ+E+     +   P        +IDTG+GLER+A +LQ   N Y+ D  + 
Sbjct: 175 VEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGLERLAMILQGVQNMYETDTLRV 234

Query: 252 LIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           ++  + ++TG++Y   N   V+ RV+ DH+R+S  LI DG+ P NEGRGYVLRRIMRRA+
Sbjct: 235 VMDKATELTGVRYGAENGTDVSLRVVADHIRTSVMLIGDGVTPGNEGRGYVLRRIMRRAI 294

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
              RLLG T  ++  L+  +   MG  YPELI  +  IE    +E+  F K L  G  +L
Sbjct: 295 RNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIETVALAEEAAFLKALKGGTNIL 354

Query: 370 DGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           +  +  +     ++L GD AF L+DT G P+D+  ++   +GL+ +D   F + ++EQR 
Sbjct: 355 ETAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQGLS-VDEDGFRRLMQEQRD 413

Query: 428 RARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
           +A+A +    +G  +   +  + +  GAT+F GY  L G                     
Sbjct: 414 KAKADARAKKTGHADLSAYREVADTAGATEFTGYTSLAG--------------------- 452

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITD 545
              S +  ++  G     A  G +VEVV D+TPFYAE GGQL DTG   +  G  +++ D
Sbjct: 453 --ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGGGQLADTGRIRLDTGAVIEVRD 510

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQK   G+ VH  +V+ G +     +  +ID   RR ++  HSATHL H AL   LG   
Sbjct: 511 VQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIARAHSATHLTHQALRDALGPTA 570

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS  +P   RFD      +    L  +E  +N+++++ L V   +M+ ++A   GA 
Sbjct: 571 AQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLSRELDVQAEVMSIDEAKKQGAI 630

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L+ ++ ESSI +G+RRIEA
Sbjct: 631 AEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGLVKLLGESSIGSGVRRIEA 685

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-- 783
           + G  A + L  +   +  L   +K     +  ++  +  + +  +    K + +  +  
Sbjct: 686 LVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIAGMLGKLKDAEKEIEKFRAEKVLAA 745

Query: 784 ---EDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQKKIQSG---IIMLVGISKEKKA 836
                 S   +  V  ++  +     + +L+ ++  ++ +IQ G   ++ L   +  +  
Sbjct: 746 AAGLADSAKDVRGVALVTGQVPDGTSADDLRKLVLDVRGRIQGGRPAVVALFTTANGRPL 805

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +V+            A DL R +AK LGGGG GG+P +AQ GG N      A+A V   +
Sbjct: 806 TVIATNEAARERGLKAGDLVRTAAKTLGGGG-GGKPDVAQGGGTNPAAIGDAVAAVERLV 864

Query: 897 KK 898
            +
Sbjct: 865 SE 866


>gi|168487382|ref|ZP_02711890.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183569764|gb|EDT90292.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
          Length = 872

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +T FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|302345784|ref|YP_003814137.1| alanine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|302149231|gb|ADK95493.1| alanine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 887

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/935 (34%), Positives = 490/935 (52%), Gaps = 90/935 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  +  
Sbjct: 1   MTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L     
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVLH 120

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           LD + LY+TV++         D+EA   W+K      + I+    +DNFW M +TGPCGP
Sbjct: 121 LDPKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCGP 178

Query: 172 CSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D           G    +++  + IEIWN+VFMQF ++       L    IDTG
Sbjct: 179 CSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLDPLKMHVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNH 272
           MG ER+  ++Q K +NYD D+F  +I   E+++G KY                    +  
Sbjct: 239 MGFERLVRLMQGKNSNYDTDIFAPVIAEIEKISGKKYNHTFPEGDNGEGINEEQKVDIAM 298

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331
           RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L  
Sbjct: 299 RVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLVR 358

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFK 389
           EMG+AYPEL   + LI   ++ E++ F +TL++G++LL+G +  L       L+G  AF+
Sbjct: 359 EMGTAYPELTAQRELIGRVMKEEEDSFLRTLEKGIMLLNGAMDELKAHGQTQLDGKEAFR 418

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           L+DT+G PLD+ + I    G   +D   FN+ +E+Q++RAR       +      W  L+
Sbjct: 419 LFDTYGFPLDLTELICAENGYT-VDEKQFNEEMEQQKARARNA-----AAVENGDWEVLR 472

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           E  G  +F+GYD       +   RKV  +K                              
Sbjct: 473 E--GEQEFVGYDYTEYECHILRYRKVTQKKNSF--------------------------- 503

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             E+V D TPFY E GGQ+GD G  + +   + + D +++          V+      E 
Sbjct: 504 -YELVLDYTPFYGEMGGQVGDQGVLVSEDETINVIDTKRENNQSVHI---VKELPKNLEA 559

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT 
Sbjct: 560 DFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKITD 619

Query: 630 AELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            EL+ +E  VN++I ++ P+   R    E+A   GA AL G KY D+VRVV         
Sbjct: 620 EELRQVEKLVNEMIRKDYPMDEHRDTPMEEAKKMGAVALFGEKYGDKVRVVRFGP----- 674

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L S 
Sbjct: 675 -SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLKSM 733

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISE 803
              +  ++   + +  EE   ++      + Q               +  V+ +  ++  
Sbjct: 734 FN-NAKDLKAVLTKFVEENDSIKKELESFRAQAVSRAAKNMVEHAETVNGVHIVKTVLP- 791

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAK 861
           +D    K ++  +++ +   ++ ++G   E +  + I++++D++  +  NA  + R +AK
Sbjct: 792 IDPASAKDIVFKVREALPEKLVCVLGSVYENRPLLSIMLSDDMVKDYDLNAGKIIREAAK 851

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++ GG GGG+PH AQ+GG N +    A+  V   +
Sbjct: 852 LIQGG-GGGQPHYAQAGGKNADGIRSAVDKVIELI 885


>gi|124024771|ref|YP_001013887.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|205830178|sp|A2BZG2|SYA_PROM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123959839|gb|ABM74622.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 886

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/907 (36%), Positives = 500/907 (55%), Gaps = 53/907 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
             IR  F+ FF ++ H+ L SSSLIP +DPT++ T +GM+PFK IF G ++      T+ 
Sbjct: 17  DEIREAFINFFVQHNHQKLASSSLIP-DDPTVLLTIAGMLPFKPIFLGLKESSTPRATSS 75

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L T+ F L+ + 
Sbjct: 76  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSTEVFRLNPQN 131

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           + I+V+ ED EA ++WK++ G+ A++IIR+   DNFWS   TGPCGPCSE++FD    + 
Sbjct: 132 IVISVFKEDLEAEQIWKEVVGVDANRIIRMGAADNFWSSGATGPCGPCSELYFDFKPEL- 190

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L    IDTGMGLERMA +LQ+K+NNY
Sbjct: 191 GSDEIDLEDDSRFIEFYNLVFMQYNRDLEGNLEPLANCHIDTGMGLERMAQILQKKSNNY 250

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   LI+A+  +  ++Y      N  + ++I DH R+ + LI DG+  +N GRGY+L
Sbjct: 251 ETDLIFPLIKAAALLAQLEYETTNKKNKTSLKIIGDHCRAVTHLICDGVSASNLGRGYIL 310

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G  +P +  L       M +AYP+L++ K +I   L+ E+ RF +T
Sbjct: 311 RRLIRRMIRHGRLVGIVQPFLPQLAEMAIELMKNAYPQLLEKKKIILNELKIEESRFLET 370

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  + SH  + ++++G  AF+LYDT+G PL++ ++I   +G   +DI  F   
Sbjct: 371 LERGEKLLAEITSH--ECDLISGAQAFELYDTYGFPLELTEEIANEKG-ISVDINGFENE 427

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + +QR RA+  S+ +       I   +   +  T+F GY+ L                  
Sbjct: 428 MAKQRKRAKEASVSIDLTEEGSIEREIS-LFDETRFEGYEKLE----------------- 469

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                  +S V  I +  E V++AV G  V+++ ++TPFYAE+GGQ+GD G      + +
Sbjct: 470 ------TTSTVIGIFKNNESVKQAVQGDLVKIIVNRTPFYAESGGQIGDKGIITSQDLEV 523

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
              +  +K + IF+H  IV  G+L    S+ + +    R++ + NH+ATHLL  AL   +
Sbjct: 524 -SVENVRKKKNIFIHSGIVNTGVLEINSSVQMNVTPSFRQRTTSNHTATHLLQSALKLSI 582

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            S VSQ GS ++   LRFD    KP+T  EL+ +E  +N  I ++ P+  + M  ++A+A
Sbjct: 583 DSSVSQRGSLVSNHRLRFDFNAPKPLTIKELEDMEVRINQWINEDHPIQIKTMPIKEAMA 642

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA A+ G KY D V        D    S  LCGGTHV+ T ++    I++E+ I +GIR
Sbjct: 643 AGALAMFGEKYGDVV-----RVVDVPGVSMELCGGTHVTRTSQLGTFKIINETGIASGIR 697

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEAI G     +   +D  +K L+   KV    +V RV  +  E +       K K  L
Sbjct: 698 RIEAIAGPSVLDYFNERDLVVKELSKSFKVQSYEIVERVSSLQLELKDKTKELIKVKNDL 757

Query: 782 NVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI----SK 832
            +            +     +   +  VD   L+S   +L   +     ++ G       
Sbjct: 758 ALAKALGLASYAKSVGKSKLLIRRLDGVDGSGLQSAASSLIDHLGKYSAVIFGGIPNQEI 817

Query: 833 EKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K   +   + DL+ D  +A       AK+ GGGG GGRP++AQ+GG      D A+  
Sbjct: 818 DNKLVFVAAFSPDLVSDGLHAGKFISGVAKMCGGGG-GGRPNLAQAGGSQPQSLDLALEK 876

Query: 892 VASFLKK 898
               L +
Sbjct: 877 ANENLTQ 883


>gi|83596048|gb|ABC25406.1| alanyl-tRNA synthetase [uncultured marine bacterium Ant39E11]
          Length = 868

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/916 (35%), Positives = 466/916 (50%), Gaps = 75/916 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF   GH ++ S+ L+  +D +LMF N+GM PFK+IFTG +   +  V
Sbjct: 1   MTASQIRQAFLNFFANKGHTIVHSAPLVTKDDSSLMFVNAGMNPFKDIFTGAKPASHSRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT  + LD
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKQEAIDWAWELLTDVYQLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T+++         D+EA   W K   L AD+I+    +DNFW M ETGPCGPCS
Sbjct: 121 PERLYVTIFEGDKGDGLALDDEAKSHWLK--HLPADRILNGNKSDNFWEMGETGPCGPCS 178

Query: 174 EIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + IE+WNLVFMQ+++        LP   +DTGMG
Sbjct: 179 EIHIDLRPEKERKQKDGATLVNMDHPQVIEVWNLVFMQYQRMADGSLVDLPSQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   ++ K++NYD D+F   IQ  E ++G  Y  +    V  RVI DH+R+  F IA
Sbjct: 239 FERLVRAIEGKSSNYDTDVFAPYIQRLESMSGRTYGKDESVDVAMRVIADHVRAVGFAIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RRA+ Y   +L + EP +  L+P +   MG A+PEL   + L
Sbjct: 299 DGQLPSNTGAGYVIRRILRRAVRYGYSVLQFKEPFIARLVPDMVENMGKAFPELKAQQTL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + +  E++ F +TL  GL  LD  +      + L G   F+LYDT+G PLD+   I  
Sbjct: 359 MTQVIEEEEQAFLRTLASGLKRLDAAMKE---GKPLMGKQCFELYDTYGFPLDLTALICK 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G   +D   F++A+ EQ+ R++              W  +    G  QF+GYD     
Sbjct: 416 EKG-IVLDEKGFHEAMAEQKGRSKVAG-----AQKVGDWVEVAPGIGD-QFVGYDQYTTE 468

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   RKV                                G   +VV   TPFY E GG
Sbjct: 469 SKLLRYRKVSN----------------------------AKGDFTQVVIQPTPFYPEGGG 500

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G  I    R+++ +   +A  I    AI+     +   ++   ID   R+  + N
Sbjct: 501 QVGDRGWLIMGKDRIEVLNCSSEAGAILHLVAIM---PAKPTAAVKAVIDEGKRKASAQN 557

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  ILG HV Q GS ++ + LRFD +H + I + EL +IE +V+  I Q+
Sbjct: 558 HSATHLLHKALRDILGVHVEQRGSFVSDEYLRFDFSHFQRIAAKELMAIESHVSTAILQD 617

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            P+   R    E+A A GA AL G KY D VRV+ +        S  LCGGTHVS+T  +
Sbjct: 618 HPLQEFRESTMEEAKAKGAMALFGEKYGDSVRVIQLGD------SVELCGGTHVSTTAAL 671

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IVSESS+ AGIRRIEA+ G  A  +L    +  +++    K    + +  +E + +
Sbjct: 672 SPFVIVSESSVAAGIRRIEALAGHSAAIYLKQAQQSQQAILEVTKGQ--DPLEAMESMKK 729

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E   +Q      +     +       S   I   N M+  + ++D+   K +  AL K+ 
Sbjct: 730 ELSAMQKALKSYQSAQAGDLKTELLQSAKAIGPYNMMAAAV-DLDAASAKDLAFALVKQD 788

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              +++L  +S + KA   + V +  LD  +A    +     +  G GGG+   A +GG 
Sbjct: 789 PKSVVLLA-LSNDGKAQAHMAVGKQALDVAHAGQWVKALGHYI-QGSGGGQDFYASAGGK 846

Query: 881 NGNKADQAIAGVASFL 896
           + +     +      L
Sbjct: 847 SPSGIPDLLQAFEEKL 862


>gi|15903283|ref|NP_358833.1| alanyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116515613|ref|YP_816683.1| alanyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|32171540|sp|Q8DPC7|SYA_STRR6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122278431|sp|Q04JW5|SYA_STRP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15458878|gb|AAL00044.1| Alanyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116076189|gb|ABJ53909.1| alanyl-tRNA synthetase [Streptococcus pneumoniae D39]
          Length = 872

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T+ +SS + AIV     V     G    ++F +T FYAE G
Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVDNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQPKIQELLDAVAGKL 872


>gi|221632736|ref|YP_002521957.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221155742|gb|ACM04869.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 878

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/909 (35%), Positives = 494/909 (54%), Gaps = 52/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  F+EFF + GH  +PSSSLIP  DPT++ T +GM      F G E+P +  +
Sbjct: 1   MQSSEIRRAFIEFFAERGHVQVPSSSLIPS-DPTVLLTTAGMQQMVPYFLGLERPPHTRL 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T++QKC R      D+D VG    H TFFEMLGNFS G YFK  AI  AW+ LTK   + 
Sbjct: 60  TSIQKCFRTV----DIDEVG-DESHLTFFEMLGNFSIGDYFKAEAISWAWEFLTKWLGVP 114

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
             R Y TV+ +DE +++ W+   G+  ++I ++   DN+W  +  TGP GP SEI +D+G
Sbjct: 115 AERWYPTVHPDDEFSYQYWRDQIGVPTERIFKL--EDNWWGPVGATGPNGPDSEIHYDRG 172

Query: 181 ECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                G    G   +  R++E WNLVFM+F ++    +  LP+ +IDTGMGLER++ ++Q
Sbjct: 173 MEYGCGRTECGPGCDCGRFLETWNLVFMEFYKEADGTQRPLPRKNIDTGMGLERISLIMQ 232

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
              + ++ DLF  ++  +  + G++Y+       + RVI DH R  +FL+ DG+ P+NEG
Sbjct: 233 GVGSVFETDLFYPILSEAATIAGVRYKEQARVDRSLRVIADHARGVTFLVGDGVFPSNEG 292

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ + +LLG   P +  L+  +     S YP L + +  I   +R E+E
Sbjct: 293 RGYVLRRVLRRAVRHGKLLGIERPFLNQLVDVVIELFSSYYPNLNEQRERIHRVIRHEEE 352

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F +TL  GL   + +L  L +  +++L GD AF+LYDT+G PL++ +++    G   +D
Sbjct: 353 HFQRTLSAGLSRFEALLDQLQRSGEQVLPGDEAFRLYDTYGFPLELTEELARESGFT-VD 411

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F +ALE QR  +RA          ++     +     T+F+GYD L           
Sbjct: 412 RAGFERALERQRELSRASVGRFADTQRQRAELYAQFSERPTEFVGYDRLE---------- 461

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ +  I+   ++ +EA +G+++E++ D+TPFY EAGGQ+GDTG  
Sbjct: 462 -------------TTATIVGILGLSDLRQEAEAGEEIELILDRTPFYGEAGGQVGDTGEI 508

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +   + + D Q+    + VH   V  G +R   S+   +D + R  +  NH+ATHLLH
Sbjct: 509 VAETGIVTVEDTQRPTPELIVHRGRVREGSIRVGQSVRAIVDAERRAAIRRNHTATHLLH 568

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG H  Q GS + PD LRFD +H + ++  +L+ IE+ VN+ I ++L V  R +
Sbjct: 569 AALRRVLGEHAVQAGSLVAPDRLRFDFSHHESVSPEQLRRIEEMVNEQIVRDLRVEVRYL 628

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
              DA+A GA AL G KY D VRVVS++       S  LCGGTHVS TGEI    I  E+
Sbjct: 629 PLRDALAEGAIALFGEKYGDTVRVVSIDG-----FSKELCGGTHVSHTGEIGAFLITDET 683

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ +GIRRIEA+TG  A        +  +  A  L V    +   +E + ++ R  Q   
Sbjct: 684 SVASGIRRIEAVTGLAAARLARTLIDVSEEAARRLHVVPEQLPEAIERLQQQVRDQQREI 743

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +    L    L+       +I     +S  I       L+ V D L+  I SG+++L G
Sbjct: 744 ERLAADLAAARLAPLVERAARIDGFRVVSARIEVPSLDVLRRVGDRLRDAIGSGVVIL-G 802

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + E +  +L + T D + R  +A  + +    +LGG G GGRP +AQ GG + ++ D+A
Sbjct: 803 TAIENRPMILAMATPDAVQRGVHAGQVVQAVTPLLGGRG-GGRPDIAQGGGADVSRLDEA 861

Query: 889 IAGVASFLK 897
           +A     ++
Sbjct: 862 LAAARGEVE 870


>gi|87123480|ref|ZP_01079331.1| Alanyl-tRNA synthetase:DHHA1 domain [Synechococcus sp. RS9917]
 gi|86169200|gb|EAQ70456.1| Alanyl-tRNA synthetase:DHHA1 domain [Synechococcus sp. RS9917]
          Length = 911

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/896 (37%), Positives = 493/896 (55%), Gaps = 56/896 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL F+++ GH+ + S+SL+P  DPT++ T +GM+PFK +F GQ++      T
Sbjct: 35  SGEQIREAFLAFYEQRGHQRIASASLVPE-DPTVLLTIAGMLPFKPVFLGQQQRPAPRAT 93

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T+ F L  
Sbjct: 94  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTEVFGLSP 149

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+E   +W+   G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 150 KNLVVSVFREDDEGEAIWRDRVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 209

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   N
Sbjct: 210 L-GDDGIDLEDDSRFIEFYNLVFMQYNRDAEGTLTPLENRNIDTGMGLERMAQILQAVPN 268

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI+ + Q+ G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 269 NYETDLIYPLIETAAQLAGVAYPALDGKGKTSLKVIGDHSRAITQLIGDGVTASNLGRGY 328

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P +  +  A    M SAYP+L++ + +I   L+ E+ RF 
Sbjct: 329 ILRRLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLLERREVILAELQREEARFL 388

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+   K   ++G  AF+LYDT+G PL++ ++I    GL  +D+  F 
Sbjct: 389 ETLERGEKLLADVLAAKPKQ--ISGAQAFELYDTYGFPLELTEEIAEEHGLT-VDLDGFE 445

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR RA+A ++ +     E I   +     AT F GY+LL                
Sbjct: 446 AAMEAQRQRAKAAAVSIDLTLQEAID-QVAADLEATAFRGYELLEQ-------------- 490

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-- 537
                    SS V A+V  GE  + AV+G  V+VV D TPFY E GGQ+GD G   GD  
Sbjct: 491 ---------SSCVVALVVNGEPAQRAVAGDSVQVVLDTTPFYGEGGGQVGDRGVLSGDGP 541

Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +   +   +   +FVH   +ERG+L     +   +D   RR+   NH+ATHLL  
Sbjct: 542 DGHGLIVAIEAVSRNRSVFVHSGRIERGVLSLGDVVHGQVDRACRRRAQANHTATHLLQA 601

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++   + Q GS +  D LRFD    + +T+AEL+ IE  +N  I++   +  + M 
Sbjct: 602 ALKQVVDPGIGQAGSLVDFDRLRFDFHCPRAVTAAELEQIEALINGWISEAHSLEVQEMA 661

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IVSES 
Sbjct: 662 IETAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSESG 716

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G    ++L  +D  +K L    K     +V RV ++ +E +  Q    
Sbjct: 717 VAAGIRRIEAVAGPAVLAYLNERDAVVKQLGERFKAQPAEIVDRVVQLADELKASQKALV 776

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L +            +     +   +  V+   L+S    L  ++  G  +++G 
Sbjct: 777 AAREELALAKSAALAGQAVAVGAHQLLVARLDGVEGGGLQSAAQGLVDQLGDGAAVVLGG 836

Query: 831 SKE----KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +     K  ++    + ++ R   A       AKV GGGG GGRP++AQ+GG +
Sbjct: 837 LPDPGDLGKVILVAAFGKAVISRGQQAGKFIGGIAKVCGGGG-GGRPNLAQAGGRD 891


>gi|325853118|ref|ZP_08171267.1| alanine--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325484492|gb|EGC87413.1| alanine--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 888

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/937 (34%), Positives = 492/937 (52%), Gaps = 90/937 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
            T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L    
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++         D+EA   W+K      + I+    +DNFW M +TGPCG
Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEASGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178

Query: 171 PCSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D           G    +++  + IEIWN+VFMQF ++       L    IDT
Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVN 271
           GMG ER+  ++Q K +NYD D+F  +I   E+++G KY                    + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYNHTFPEGPNGEGVNEEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L 
Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAF 388
            EMG+AYPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L   E   L+G  AF
Sbjct: 359 HEMGTAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHEKKELDGKEAF 418

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + I    G   +D   FN+ + +Q++RAR  ++          W  L
Sbjct: 419 RLFDTYGFPLDLTELICGENGYT-VDEKQFNEEMAQQKARARNAAV-----VENGDWEVL 472

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +E  G  +F+GYD       +   RKV  +K                             
Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   + + D +++          V++     +
Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDTKRENNQSIHI---VKQLPKNVK 559

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT
Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619

Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             EL+ +E  VN++I ++ P+   R    E+A   GA AL G KY D+VRVV        
Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFGP---- 675

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L +
Sbjct: 676 --SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIIS 802
               +  ++   +    EE   ++    K + Q               +  V+ +  ++ 
Sbjct: 734 MFN-NAKDLKAVLTRFVEENDAMKREVEKFRAQAVDRAAKTLAERVEMVDGVHVIKAVLP 792

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSA 860
            VD    K ++  +++ +   ++ ++G   + +  + I++++D++     NA  + R +A
Sbjct: 793 -VDPASAKDIVFKVRQSLPEKLVCILGSVYDNRPQLSIMLSDDMVKEHGLNAGKIIREAA 851

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           K++ GG GGG+PH AQ+GG + +    A+  V   + 
Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDADGVSAAVDKVMELIN 887


>gi|307705063|ref|ZP_07641945.1| alanyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307621386|gb|EFO00441.1| alanyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 872

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDADALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    + K +VL+      +   +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGD-KVNVLVASK---IKDLHAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|311113673|ref|YP_003984895.1| alanine--tRNA ligase [Rothia dentocariosa ATCC 17931]
 gi|310945167|gb|ADP41461.1| alanine--tRNA ligase [Rothia dentocariosa ATCC 17931]
          Length = 893

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/927 (34%), Positives = 493/927 (53%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   ++EFF+K GH ++PS+SLI  N+P  MFT +GMVPF   F G+E P +   
Sbjct: 1   MLSQEISKRWIEFFEKRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  A++LLT      
Sbjct: 60  TSVQKCIRTL----DIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTASQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+Y+ D EAF +W K  G   ++I R+   +N+WS  + GP GP SEIF
Sbjct: 116 GYGLDPERLWVTIYEGDNEAFDVWTKTVGFPEERIQRMGMKENYWSTGQPGPAGPDSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G + + +RYIEIWNLVFMQ+++         +    LPK +IDTG+G+
Sbjct: 176 YDRGPAY-GKEGGPAVDDDRYIEIWNLVFMQYQRGEGIGKEDFEILGELPKKNIDTGLGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281
           ER+A +LQ   N Y+ D  + ++ A+ +++G KY            + V  RV+ DH+RS
Sbjct: 235 ERLAMLLQGVENFYETDQVRPVLDAASKLSGKKYHGSESPEDPGYEDDVRMRVVADHIRS 294

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           S  LIADG+ P+NEGRGY+LRR+MRRA+   RLLG TEP +  L PA    M  A+P + 
Sbjct: 295 SLMLIADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPILFPASRDAMAGAFPYVA 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLD 399
                I     +E++ F  T++ G   L+  +  +       ++G  AF L+DT+G P+D
Sbjct: 355 DDFERISRIAYAEEKAFLHTIETGTERLEEAVATAKKDGSNSVSGAEAFALHDTYGFPID 414

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  ++    G+  +D  +F + + EQR RA+A +        +            + F G
Sbjct: 415 LTLEMAAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGSFADLSELRKLVDERGSIFTG 473

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y  LR                         + ++A+++ G  V  A +G K+EVV D+TP
Sbjct: 474 YTELR-----------------------TETHLRALLKDGVSVPVAKAGDKIEVVLDETP 510

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE GGQ  DTG   G+G  + + DVQ+  +G+ VH A+V  G       +V  +D Q 
Sbjct: 511 FYAEGGGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEAHPGAEVVAQVDVQR 570

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR     HS TH++H AL  +LG+  +Q GS      LRFD    + ++ +  + +E+  
Sbjct: 571 RRDGEKAHSGTHIVHAALHQVLGNEATQRGSFNKEGYLRFDFAWGESLSDSAKREVEEVA 630

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I  N  V+ R M   +A A GA +L G KY + VR+V +    GG  S  LCGGTHV
Sbjct: 631 NLAIRDNHEVIAREMPLAEAKALGAMSLFGEKYGNIVRMVEI----GGEFSRELCGGTHV 686

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVG 758
            ++ EI  L +++E S+ +G RR+EA+ G  +  HL  +   +  L   +KV     +  
Sbjct: 687 GTSSEIGSLTLLTEQSVGSGNRRVEALVGMNSFEHLAAERTLVNQLTGMMKVQSSAELPE 746

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813
           ++ +   + +  +    K + +    +      +   I  V  ++H   E+D+  ++S+ 
Sbjct: 747 KINQTLAKLKSAEKELEKLRREKLQAEAGKLLENAQTIGSVRVLTHHAGELDANGVRSLA 806

Query: 814 DALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
             L+ +  S   ++ V      +  +L+   E   +    A  L RL+A +LGGGG GG+
Sbjct: 807 LDLRSRFGSEAAVVAVTGVANGRPVILVATNEGAREAGIKAGALVRLAAGILGGGG-GGK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
             +AQ GG + +K  +A+  + + + +
Sbjct: 866 DDVAQGGGQDASKVSEALDAIRNAIAQ 892


>gi|291557844|emb|CBL34961.1| alanyl-tRNA synthetase [Eubacterium siraeum V10Sc8a]
          Length = 878

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/912 (36%), Positives = 497/912 (54%), Gaps = 53/912 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    ++ +R ++L+FF+  GH  + S+ L+P  D +++  N+GM P K  F G E+P  
Sbjct: 1   MKWTGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             VTT QKC+R      D+DNVG+T RH T+FEMLGNFSFG YFK  A   AW+ LTK  
Sbjct: 61  HRVTTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ + RL++T+Y+ED EA  +W    G+  D+II++   DNFW    +GPCGPCSEI FD
Sbjct: 117 EIPEDRLWVTIYEEDNEAGDIWANEVGVPRDRIIKLGKADNFWEHG-SGPCGPCSEIHFD 175

Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           +GE   P      + E +R IEIWNLVF QF+   K     L   +IDTGMGLER+A V+
Sbjct: 176 RGEKYGPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVM 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+  N +++D  +++++    V G+ Y       V+ RVI DH+RS++F++ DGI P+NE
Sbjct: 236 QDVDNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + R+LG   P +  +   +  E  +AYPEL + +  I++ +++E+
Sbjct: 296 GRGYVLRRLLRRAARHGRMLGVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E F KT+D+G+ +L   +  L     +  IL+G+  FKL+DT+G P+D+ ++IL  +   
Sbjct: 356 ESFAKTVDKGMQILGEFIKELSADDTRKPILSGENLFKLHDTYGFPIDLTREILQEKN-I 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           GID   F + + EQ+++AR++    G G  E    +L      T F+GY  L        
Sbjct: 415 GIDEERFFELMNEQKAKARSNQAFKG-GWDEATANAL--SGLTTTFVGYKSL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S + A+++ GE+ +    G +V VV D TPFYAE+GGQ+GD 
Sbjct: 464 ---------------TADSKILAMIKDGEVTDVCNEGDEVTVVLDVTPFYAESGGQVGDC 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G        +Q+ D +K   G F+ +  VE G   T+ S+   +D + R   + NH+  H
Sbjct: 509 GTITAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG HV Q GS + P   RFD +H   +T  EL+ IE  VND I   +PVVT
Sbjct: 569 LLQAALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILSGIPVVT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             +  E+A   GA AL G KY D VRVV       G  S+  CGGTH+ +T +  L  I+
Sbjct: 629 EELPIEEARKKGAMALFGEKYGDIVRVVQ-----AGDVSTEFCGGTHLDNTAKAGLFKII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKL 770
           SE+S+ +G+RRIEA+TG    S        + ++A  LK  +   V+ + E +  E   +
Sbjct: 684 SETSVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPSAVMQKCENMMNEMHAM 743

Query: 771 QLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +        Q+        ++  +   S ++S V    L+   D L+    S I 
Sbjct: 744 QAEIDRLNGIISMSQMKNVTDGATEVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFIA 803

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+S  K   + I   E +    NA  + +  A + GG G GG+P  A +G  +  K 
Sbjct: 804 VLAGVSDGKGNFLCIASPEAVAKGANAGKIVKKIAAIAGGKG-GGKPDTAMAGIADVTKI 862

Query: 886 DQAIAGVASFLK 897
           D+A+  +   +K
Sbjct: 863 DEALLALTDIVK 874


>gi|300741580|ref|ZP_07071601.1| alanine--tRNA ligase [Rothia dentocariosa M567]
 gi|300380765|gb|EFJ77327.1| alanine--tRNA ligase [Rothia dentocariosa M567]
          Length = 893

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/927 (34%), Positives = 493/927 (53%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   ++EFF+K GH ++PS+SLI  N+P  MFT +GMVPF   F G+E P +   
Sbjct: 1   MLSQEISKRWIEFFEKRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  A++LLT      
Sbjct: 60  TSVQKCIRTL----DIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTASQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+Y+ D EAF +W K  G   ++I R+   +N+WS  + GP GP SEIF
Sbjct: 116 GYGLDPERLWVTIYEGDNEAFDVWTKTVGFPEERIQRMGMKENYWSTGQPGPAGPDSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G + + +RYIEIWNLVFMQ+++         +    LPK +IDTG+G+
Sbjct: 176 YDRGPAY-GKEGGPAVDDDRYIEIWNLVFMQYQRGEGIGKEDFEILGELPKKNIDTGLGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281
           ER+A +LQ   N Y+ D  + ++ A+ +++G KY            + V  RV+ DH+RS
Sbjct: 235 ERLAMLLQGVENFYESDQVRPVLDAASKLSGKKYHGSESPEDLGYEDDVRMRVVADHIRS 294

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           S  LIADG+ P+NEGRGY+LRR+MRRA+   RLLG TEP +  L PA    M  A+P + 
Sbjct: 295 SLMLIADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPILFPASRDAMAGAFPYVA 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLD 399
                I     +E++ F  T++ G   L+  +  +       ++G  AF L+DT+G P+D
Sbjct: 355 DDFERISRIAYAEEKAFLHTIETGTERLEEAVATAKENGSNSVSGAEAFALHDTYGFPID 414

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  ++    G+  +D  +F + + EQR RA+A +        +            + F G
Sbjct: 415 LTLEMAAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGAFADLSELRKLVDERGSIFTG 473

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y  LR                         + ++A+++ G  V  A +G K+EVV D+TP
Sbjct: 474 YTELR-----------------------TETHLRALLKDGVSVPVAKAGDKIEVVLDETP 510

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE GGQ  DTG   G+G  + + DVQ+  +G+ VH A+V  G       +V  +D Q 
Sbjct: 511 FYAEGGGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEAHPGAEVVAQVDVQR 570

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR     HS TH++H AL  +LG+  +Q GS      LRFD    + ++ +  + +E+  
Sbjct: 571 RRDGEKAHSGTHIVHAALHQVLGNEATQRGSFNKEGYLRFDFAWGESLSDSAKREVEEVA 630

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I  N  V+ R M   +A A GA +L G KY + VR+V +    GG  S  LCGGTHV
Sbjct: 631 NLAIRDNHEVIAREMPLAEAKALGAMSLFGEKYGNIVRMVEI----GGEFSRELCGGTHV 686

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVG 758
            ++ EI  L +++E S+ +G RR+EA+ G  +  HL  +   +  L   +KV     +  
Sbjct: 687 GTSSEIGSLTLLTEQSVGSGNRRVEALVGMNSFEHLAAERTLVNQLTGMMKVQSSAELPE 746

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813
           ++ +   + +  +    K + +    +      +   I  V  ++H   E+D+  ++S+ 
Sbjct: 747 KINQTLAKLKSAEKELEKLRREKLQAEAGKLLENAQTIGSVRVLTHHAGELDANGVRSLA 806

Query: 814 DALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
             L+ +  S   ++ V      +  +L+   E   +    A  L RL+A VLGGGG GG+
Sbjct: 807 LDLRSRFGSEAAVVAVTGVANGRPVILVATNEGAREAGIKAGALVRLAASVLGGGG-GGK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
             +AQ GG + +K  +A+  + + + +
Sbjct: 866 DDVAQGGGQDASKVSEALDAIRNAIAQ 892


>gi|225857018|ref|YP_002738529.1| alanyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|225726317|gb|ACO22169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae P1031]
          Length = 872

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +T FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLVIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDVVAGKL 872


>gi|148997564|ref|ZP_01825169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|168575843|ref|ZP_02721758.1| alanyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|194397245|ref|YP_002038030.1| alanyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|307068035|ref|YP_003877001.1| alanyl-tRNa synthetase [Streptococcus pneumoniae AP200]
 gi|147756619|gb|EDK63660.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|183578173|gb|EDT98701.1| alanyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|194356912|gb|ACF55360.1| alanyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|306409572|gb|ADM84999.1| Alanyl-tRNA synthetase [Streptococcus pneumoniae AP200]
          Length = 872

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGNIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     V     G    ++F +T FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQLSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GRNQAKIQELLDAVAGKL 872


>gi|307709086|ref|ZP_07645545.1| alanyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307620032|gb|EFN99149.1| alanyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 872

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
               +  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEADMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-IASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +      +      +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDAAGNLVATVTNVQKAPNGQALHTVEVHAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|306824980|ref|ZP_07458323.1| alanine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432807|gb|EFM35780.1| alanine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 872

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/918 (35%), Positives = 487/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIA-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G    + +++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAETIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + + S + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +      +      +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDAAGNLVATVTDVQKAPNGQALHTVEVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK +A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKVVAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R LQ  +A+ K +              +     +++  +S  D+  L++  D  ++
Sbjct: 740 QEQVRHLQKENAELKEKAAAAAAGDVFKDVKEANGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|325285608|ref|YP_004261398.1| alanyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324321062|gb|ADY28527.1| alanyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 871

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/920 (36%), Positives = 489/920 (53%), Gaps = 73/920 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR+ FLEFF+   H+++ S+ ++  +DPTLMFTN+GM  FK  F G  +     V
Sbjct: 1   MKSQEIRSQFLEFFKNKTHKIVSSAPMVIKDDPTLMFTNAGMNQFKEFFLGNTEAKNTRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFKE AI  AW+LLTK F +D
Sbjct: 61  VDTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEDAISWAWELLTKVFKID 120

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  LY+TV++          D+EA  LWKKI  +   +I+     DNFW M + GPCGPC
Sbjct: 121 ESSLYVTVFEGSKDKDNLEMDQEALDLWKKI--IPESQILFGNKKDNFWEMGDQGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    + +  + +EIWNLVFMQ+ ++   E   LP   +DTGM
Sbjct: 179 SEIHVDIRSAEEKAKVSGAELVNMDHPQVVEIWNLVFMQYNRKANGELENLPAKHVDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           G ER+  V+Q   +NYD D+F  +I+  E +T  +Y  N   N   RVI DH+R+ +F I
Sbjct: 239 GFERLCMVMQGVQSNYDTDVFTPIIREIETITNAEYNKNEDTNIAIRVIADHIRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP M  L+  L   MG A+PEL + K 
Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMYRLVNVLTNTMGDAFPELKEQKQ 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LIE  ++ E+  F KTLD+GLVLLD V++     + ++G  AF+LYDT+G P+D+   IL
Sbjct: 359 LIENVVKEEEHSFLKTLDQGLVLLDSVINSAS-SKTIDGRKAFELYDTYGFPIDLTALIL 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG   +D   F+ A++EQ++R+R+ S         K  + +  +    +F+GYD+L  
Sbjct: 418 SERGYT-LDEKGFDAAMQEQKNRSRSASE------VSKEDWEVLLQDAEQEFVGYDVLET 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  + + RK                           V     G++ ++VF+ TPFYAE G
Sbjct: 471 NVRLVKYRK---------------------------VTSKKEGKQYQLVFNITPFYAEGG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G        +      KK     +H A  +     T       +D + R++ + 
Sbjct: 504 GQVGDKGYLEAQNGDVVYILDTKKENNEIIHFA--KNLPKNTTDIFKAVVDVKQRQRTAS 561

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+HV Q GS +    LRFD +H   +T+ +LK +ED VN  I  
Sbjct: 562 NHTATHLLHQALREVLGTHVEQKGSAVHSKYLRFDFSHFSKVTTEQLKEVEDFVNARIEG 621

Query: 646 NLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           NLP    R +  ++A+ +GA AL G KY D VR++          S  LCGGTHV +TG+
Sbjct: 622 NLPLEEKRNIPMQEALDAGAMALFGEKYGDTVRLIRFG------QSVELCGGTHVQNTGD 675

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SE ++ +GIRRIEAIT    +      +E L  +   L  +  + V  V  + 
Sbjct: 676 IWHFKIKSEGAVASGIRRIEAITSDAVKDFYADNNEVLTDIKEVLN-NAKDPVKAVVSLQ 734

Query: 765 EEYRKLQLIHAKR---KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE  KL+    +    K +    DL      +  V F++  + ++D   +K +   +   
Sbjct: 735 EENNKLKKEIEQLLKDKAKNLKGDLLNELQDVNGVQFLAKKV-DLDPAGIKDLCFNMGAN 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             +   +L G     KA++   ++++L      NA  + R   K + GGG GG+P  A +
Sbjct: 794 ATNM-FLLFGAENNGKATLSCYISKELAAEKDLNAGAIVRELGKYIQGGG-GGQPFFATA 851

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG N     +A+    +++K
Sbjct: 852 GGKNPGGIAEALDKAIAYIK 871


>gi|148989504|ref|ZP_01820863.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|149007347|ref|ZP_01831005.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147761151|gb|EDK68119.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147925047|gb|EDK76128.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|332074706|gb|EGI85180.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
          Length = 872

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     V     G    ++F +T FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|15901237|ref|NP_345841.1| alanyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111658578|ref|ZP_01409235.1| hypothetical protein SpneT_02000253 [Streptococcus pneumoniae
           TIGR4]
 gi|20532258|sp|Q97Q48|SYA_STRPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|14972870|gb|AAK75481.1| alanyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
          Length = 872

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     V     G    ++F +T FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVDNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQPKIQELLDAVAGKL 872


>gi|307706847|ref|ZP_07643649.1| alanyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307617720|gb|EFN96885.1| alanyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 872

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIA-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVDVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDEVAGKL 872


>gi|168484561|ref|ZP_02709513.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|172042221|gb|EDT50267.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
          Length = 872

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     V     G    ++F +T FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGEL 872


>gi|15673706|ref|NP_267880.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|20532263|sp|Q9CEW0|SYA_LACLA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|12724742|gb|AAK05822.1|AE006402_10 alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|326407190|gb|ADZ64261.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 872

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/915 (35%), Positives = 474/915 (51%), Gaps = 67/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF+  GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  AW+LLT  + F+
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRKEAIAFAWELLTSSEWFE 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT Y  D++ +  W +  G+    ++ I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYITYYPADKDTYNRWVE-VGVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231
           GE                E +RYIEIWN+V  QF         E   LP+ +IDTGMGLE
Sbjct: 176 GEVYDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYPELPQKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGI 290
           RM  ++Q    N+D DLF  +I+  E+++G  Y   +  ++ +VI DH+RS SF I DG 
Sbjct: 236 RMVCIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  I + 
Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E+E F +T+D G  L+D +L +L  +    L G   F+LYDT+G P+++ +++    
Sbjct: 356 IDREEETFNRTIDAGQKLIDELLLNLKSEGKDRLEGADIFRLYDTYGFPVELTEELAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   ID   F  A++ Q+ RARA  +  GS   +    +L      ++F+ Y+       
Sbjct: 416 GFK-IDHEGFKVAMKAQQERARAAVVKGGSMGAQN--ETLSSIEVESEFL-YED------ 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                  +   +Q  EIV+E     K ++VFD TPFYAE GGQ+
Sbjct: 466 -----------------KTTQGKLLVSIQDDEIVDEVSG--KAQLVFDVTPFYAEMGGQV 506

Query: 529 GDTGCAIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G       ++       + A      H++     L+   S  L ID + R  +  NH
Sbjct: 507 ADHGVIKDAEGQVVANVLDVQHAPHGQNLHSVETLSPLKVGESYTLEIDKERRAAVVKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH   +T  EL  IE  VN++I Q+L
Sbjct: 567 TATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSL 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   +   A   GA AL G KY   VRVV +     G +S  LCGGTH  +T EI L
Sbjct: 627 KVETVETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIGL 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G+RRI A+TGQ+A       +  L  +A+ +K  Q   V+ +V  + +E
Sbjct: 682 FKIVKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLNEVATMVKAPQTSQVLAKVTSLQDE 741

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +  Q  +     +L          +      +NF++  ++  D+  L+++ D  ++K  
Sbjct: 742 LKTAQKENDALAGKLAASQSDEIFKNVQTAGSLNFIASEVTVPDANGLRNLADIWKQKEL 801

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK + ++   + D      A +L +  A  +  G GGG+P MA +GG  
Sbjct: 802 SDVLVLVAKIGEKVSLLVASKSSD----VKAGNLVKELAPFV-DGRGGGKPDMAMAGGSK 856

Query: 882 GNKADQAIAGVASFL 896
                + +A VA  L
Sbjct: 857 AAGIPELLAAVAEKL 871


>gi|318040735|ref|ZP_07972691.1| alanyl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 889

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/907 (37%), Positives = 498/907 (54%), Gaps = 53/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+F+++ GH+ + S+SL+P  DPT++ T +GM+PFK +F GQ++      T
Sbjct: 18  TGAEIRAAFLDFYEQRGHKPMASASLVPE-DPTVLLTIAGMLPFKPVFLGQQQRPAPRAT 76

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T  F L  
Sbjct: 77  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTGVFGLSP 132

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 133 KNLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 192

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   N
Sbjct: 193 L-GDDGIDLEDDSRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQAVPN 251

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI+ + Q+ G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 252 NYETDLIYPLIETAAQLAGVAYPALDDKGKTSLKVIGDHSRAITQLICDGVTASNLGRGY 311

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P +  +  A    M SAYP+L++ + +I   L+ E+ RF 
Sbjct: 312 ILRRLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLVERREVILAELQREEARFL 371

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+   K   ++G+ AF+LYDT+G PL++ ++I    GL  +D+  F 
Sbjct: 372 ETLERGEKLLADVLAAKPKQ--ISGEQAFELYDTYGFPLELTEEIAEEHGLT-MDLEGFE 428

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR RA+A ++ +     E I   +     AT F GY+LL                
Sbjct: 429 AAMEAQRQRAKAAAVSIDLTLQEAID-QVAADLEATAFRGYELLEQ-------------- 473

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    SS V A+V  GE  + AV+G  V+VV D TPFY E GGQ+GD G   GD  
Sbjct: 474 ---------SSCVLALVVNGEPAQRAVAGDSVQVVLDTTPFYGEGGGQVGDRGVLSGDE- 523

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +   D   +   +FVH   +ERG+L     +   +D   RR+   NH+ATHLL  AL  
Sbjct: 524 LIVAIDAVSRNRSVFVHSGRIERGVLSLGDVVHGQVDRACRRRAQANHTATHLLQAALKQ 583

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD    + ++++EL+ IE  +N  I++   +  + M  E A
Sbjct: 584 VVDPGIGQAGSLVDFDRLRFDFHCPRAVSASELEQIEVLINGWISEAHSLEVQEMAIEKA 643

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IVSES + AG
Sbjct: 644 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSESGVAAG 698

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-----IH 774
           IRRIEA+ G    ++L  +D  +K L    K     +V RV ++ +E +  Q        
Sbjct: 699 IRRIEAVAGPAVLAYLNERDGVVKQLGERFKAQPAEIVDRVVQLADELKASQKALAAARE 758

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
                +          + +   +   +  V+   L+S    L  ++  G  +++G   + 
Sbjct: 759 ELALAKSAALAGLAVAVGEHQLLVARLDGVEGGGLQSAAQGLADQLGDGAAVVLGGLPDP 818

Query: 834 ---KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K  ++    + ++     A       AK  GGGG GGRP++AQ+GG +G   D A+
Sbjct: 819 ADLGKVILVASFGKAVIAAGPKAGAFIGGIAKACGGGG-GGRPNLAQAGGRDGAALDGAL 877

Query: 890 AGVASFL 896
               + L
Sbjct: 878 EQARTEL 884


>gi|259649109|dbj|BAI41271.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 912

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/916 (34%), Positives = 481/916 (52%), Gaps = 59/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 35  MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 94

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K FD
Sbjct: 95  TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFD 150

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K  G++ D I+     DNFW + E GP GP SEIF+D+
Sbjct: 151 FDPKRLYVTVYPKDKVTKELWRK-VGVADDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 206

Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           G+                E  RY+EIWN+VF +            P  +IDTGMGLER+ 
Sbjct: 207 GQSFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 266

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIADGIL 291
            V+Q     ++ DLF  +I+A+E+++  K       + V+ ++I DH R+ +F I DG L
Sbjct: 267 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGANAQDDVSFKIIADHARTVTFAIGDGAL 326

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++ +
Sbjct: 327 PSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQPFIQKVI 386

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409
            SE+ RF +TLD G+ LL+ +++ L +D    ++G  AFKL+DT+G P+++  +     G
Sbjct: 387 ESEEARFRQTLDAGVNLLNQIIAELKQDGKKEISGADAFKLFDTYGFPVEMTNEYAEDEG 446

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  F + +  QR RAR       S  ++     L +    ++F G+  L      
Sbjct: 447 LK-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDTV--LMDITTPSKFTGWTELDHKH-- 501

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + ++AIV   ++ +E  +GQ  +++FD+TPFYAE GGQ+ 
Sbjct: 502 --------------------ATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYAEMGGQVA 540

Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G        +       + A      H +  +  L       L++D   R+++S+NH+
Sbjct: 541 DHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKSKLTKGQPYWLSVDRLRRQKVSLNHT 600

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I   LP
Sbjct: 601 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVNQKIWDALP 660

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +  + M   +A   GA A+ G KY D VR+VS+     G ++    GGTH ++T  + L 
Sbjct: 661 ITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPTNTNALGLF 715

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            I SES I AG+RR+EA+T + A  +L  Q + LK  A  LK+ Q  NV  +V ++  + 
Sbjct: 716 KITSESGIGAGVRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNVPSKVTQLQADL 775

Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +  Q   A  + +L  +  +        +     ++  +      EL+ + D  + K  S
Sbjct: 776 KTEQKTVAGLQAKLAAQAAAGIFDRAETVGGFKLIAKQVQVAGMNELRQLADEWKTKQAS 835

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            I++L   +  K   ++            A DL +  A  +GGGG GGRP MAQ+GG   
Sbjct: 836 DILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKKP 894

Query: 883 NKADQAIAGVASFLKK 898
                A+A   + + +
Sbjct: 895 AGIPSALAEAKNVISQ 910


>gi|169833050|ref|YP_001694818.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|205830228|sp|B1ICI3|SYA_STRPI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|168995552|gb|ACA36164.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
          Length = 872

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    +  +   FYAE G
Sbjct: 462 ----------------NHNASQLSSKLVAIVADNAEVEAVSEGTTSLIFAETP-FYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQPKIQELLDAVAGKL 872


>gi|168493286|ref|ZP_02717429.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|221232124|ref|YP_002511277.1| alanyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|183576772|gb|EDT97300.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|220674585|emb|CAR69148.1| alanyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
          Length = 872

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +T FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAAILKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|327314000|ref|YP_004329437.1| alanine--tRNA ligase [Prevotella denticola F0289]
 gi|326944684|gb|AEA20569.1| alanine--tRNA ligase [Prevotella denticola F0289]
          Length = 888

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/937 (34%), Positives = 492/937 (52%), Gaps = 90/937 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
            T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L    
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++         D+EA   W+K      + I+    +DNFW M +TGPCG
Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEASGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178

Query: 171 PCSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D           G    +++  + IEIWN+VFMQF ++       L    IDT
Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVN 271
           GMG ER+  ++Q K +NYD D+F  +I   E+++G KY                    + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYNHTFPEGPNGEGVNEEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L 
Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAF 388
            EMG+AYPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L   E   L+G  AF
Sbjct: 359 HEMGTAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHEKKELDGKEAF 418

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + I    G   +D   FN+ + +Q++RAR  ++          W  L
Sbjct: 419 RLFDTYGFPLDLTELICGENGYT-VDEKQFNEEMAQQKARARNAAV-----VENGDWEVL 472

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +E  G  +F+GYD       +   RKV  +K                             
Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   + + D +++          V++     E
Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDTKRENNQSIHI---VKQLPKNVE 559

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT
Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619

Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             EL+ +E  VN++I ++ P+   R    E+A   GA AL G KY D+VRVV        
Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFGP---- 675

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L +
Sbjct: 676 --SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIIS 802
               +  ++   +    EE   ++    K + Q               +  V+ +  ++ 
Sbjct: 734 MFN-NAKDLKAVLTRFVEENDAMKREVEKFRTQAVDRAAKTLAERVEMVDGVHVIKAVLP 792

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSA 860
            VD    K ++  +++ +   ++ ++G   E +  + I++++D++     NA  + R +A
Sbjct: 793 -VDPASAKDIVFKVRQSLPEKLVCILGSVYEDRPQLSIMLSDDMVKEHGLNAGKIIREAA 851

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           K++ GG GGG+PH AQ+GG + +    A+  V   + 
Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDADGVSAAVDKVMELIN 887


>gi|326803428|ref|YP_004321246.1| alanine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651546|gb|AEA01729.1| alanine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 883

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/923 (34%), Positives = 487/923 (52%), Gaps = 65/923 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M       IR  +++F++  GH++ PS+SL+P NDPTL++ NSG+   K+   G E P  
Sbjct: 1   MKKLTGEEIRQMWIDFWKGKGHDIYPSASLVPDNDPTLLWMNSGVAALKHYLDGSEVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QKC+R     ND++NVG T RH TFFEMLGN+S G YFKE  I  AW+ LT  K
Sbjct: 61  PRIANAQKCIRT----NDIENVGVTARHQTFFEMLGNWSVGDYFKEEVIPWAWEFLTDEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD   LY+T Y +D+ +  LW+K++GLS D  + +   DNFW +   GPCGP +EIF
Sbjct: 117 WLGLDPELLYMTYYPDDDVSHGLWQKVTGLSEDHFVSL--EDNFWDLG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           FD+G+                E ERY+EIWN+VF +F          L + ++DTGMGLE
Sbjct: 174 FDRGKAYQDLDDDDPEMFPGGENERYLEIWNIVFSEFNHMPDGSYEKLKQHNVDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIAD 288
           R+++VLQE   N++ DL   LI+  E+++  K            +VI DH+R+ SF + D
Sbjct: 234 RISSVLQETPTNFETDLLFPLIKEVEKLSDGKKYGESKETDTAMKVIADHIRAVSFAVGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
             LP+NEGRGY+LRR++RR++ Y R LG     +  L+P +  +M   YPEL + + +I+
Sbjct: 294 NALPSNEGRGYILRRLIRRSVMYGRRLGIQGSFLAKLVPIVADKMEKHYPELKEKEAIIQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E +  E++RF +T+  G  ++   ++ L +  +  L+G  AFKLYDT+G PL++ ++ L 
Sbjct: 354 EVVDREEKRFQETIADGENIIKNKIAELEESGENSLDGQSAFKLYDTYGFPLELTEEYLA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G + +DI  FNQA+EEQ+ RARA     G    +     L E    + F GY+     
Sbjct: 414 ETGFS-VDIDGFNQAMEEQKERARAARKDQGGLAVQSTV--LGEIDVPSHFTGYEE---- 466

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                              +   + + AIV Q EI +EA +  K   + ++TPFY E GG
Sbjct: 467 -------------------DVTETKINAIVYQDEISQEAPANSKAYFIAEKTPFYGERGG 507

Query: 527 QLGDTGCAIGDGIRLQIT--DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+GD+G        L     D +       +H+    +  +     + L +D   RR + 
Sbjct: 508 QVGDSGKLYNLDGELLGYIRDTKHAPNDQNLHYIDTVQ-PISVGQEVRLEVDSARRRLIR 566

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH  L  +LG  V+Q GS +    LRFD T+   ++S +L+ +E  VN+ I 
Sbjct: 567 NNHTATHLLHRVLKDVLGEQVNQAGSLLDEHYLRFDFTYFGQVSSDQLEEVERRVNEKIW 626

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           + +PV T     + A   GA AL G KY   +D +RV+++        S  LCGGTHV +
Sbjct: 627 EQIPVETIFTTVKAAKEHGAIALFGEKYLKLHDEIRVINI-----DDWSMELCGGTHVKN 681

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           TG I L  I+SES I +G+RRIEA+T + A  +   +   L  +   LKV +  +V  R+
Sbjct: 682 TGFIGLFKIISESGIGSGVRRIEALTSKAAYEYYEAKLGLLNQVRDDLKVKKAEDVPHRL 741

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDA 815
           +++  E + L+        + N    S       +   V +++  +      +L+++ D 
Sbjct: 742 QQLEGERKSLESEVESLHAKANQMAASQIFDAVKESNGVRYIAEELDHKTMDDLRAISDE 801

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++   S +++L   + +K   ++ V  + + +   A D+ +  A  + GG GGGRP +A
Sbjct: 802 WKQNNYSDVLVLATANGDKANMLVAVSPDKVKEGLKAGDIIKELAPYINGG-GGGRPELA 860

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q+GG N      A+  +   L K
Sbjct: 861 QAGGKNPAGIPDALKALEEVLNK 883


>gi|317505218|ref|ZP_07963150.1| alanine--tRNA ligase [Prevotella salivae DSM 15606]
 gi|315663647|gb|EFV03382.1| alanine--tRNA ligase [Prevotella salivae DSM 15606]
          Length = 916

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/936 (33%), Positives = 481/936 (51%), Gaps = 89/936 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-VYQ 59
           M   + +R +F +FF+   H+++ S+ ++  +DPTLMFTN+GM  +K+I  G + P    
Sbjct: 30  MMTANEVRESFKKFFESKEHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 89

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     
Sbjct: 90  RRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDFAWEYLVDVLH 149

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L+   LY+TV++         D+EA   W K   + AD II    +DNFW M +TGPCGP
Sbjct: 150 LNPEDLYVTVFEGAPEEGLKRDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCGP 207

Query: 172 CSEIFFD-QGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           C+EI  D +         G    +++  + IEIWN+VFMQF ++       LP   IDTG
Sbjct: 208 CTEIHVDSRTPEEKAKLPGRELVNKDNPQVIEIWNIVFMQFNRKADGSLEPLPMHVIDTG 267

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNH 272
           MG ER+  +LQ+K +NYD D+F+ +I+  E ++G KY                    +  
Sbjct: 268 MGFERLVRMLQDKHSNYDTDIFQPVIKQIELLSGKKYGFTTPTGENGEGKDEQEKIDIAM 327

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331
           RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  +  L+P L  
Sbjct: 328 RVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLVPVLVQ 387

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFK 389
           EMG AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L       L+G  AF+
Sbjct: 388 EMGEAYPELSAQQELISRVMKEEEDSFLRTLEKGINLLNGDMDELKAHGKTELDGTSAFR 447

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           L+DT+G PLD+ + I    G   +D   F++ + +Q++RAR       +      W  ++
Sbjct: 448 LFDTYGFPLDLTELICREHGYT-VDEKGFDEEMAKQKARARNA-----AAVENGDWEVVR 501

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           +  G   F+GYD    +  +   RKV  +K                              
Sbjct: 502 D--GEQVFVGYDYTEYTCHILRYRKVTQKKNTF--------------------------- 532

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             E+V D TPFY E GGQ+GD G  +     + I D +++          V+      E 
Sbjct: 533 -YEIVLDYTPFYGEMGGQVGDQGTLVSANETINIVDTKRENNQSIHI---VKELPKDIEA 588

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             +  +D + R   + NH+ATHLL +AL  ILG HV Q GS + P  LRFD +H + ++ 
Sbjct: 589 EFMACVDVEKRNGSAANHTATHLLDYALKQILGDHVEQKGSYVDPTTLRFDFSHFQKVSD 648

Query: 630 AELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            +L+ +E  VN +I ++ P+   R    E+A   GA AL G KY D+VRVV         
Sbjct: 649 EQLRQVERLVNKMIREDYPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFGP----- 703

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S   CGG H  STG+I    I+SESS+ AGIRRIEA+TG      +    + +  L S 
Sbjct: 704 -SCEFCGGIHAKSTGQIGFFKIISESSVAAGIRRIEALTGVACEDTIYALQDTMNDLKSM 762

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDLS--CHKIADVNFMSHIISE 803
              +  ++   + +   E+ +++    K + Q      ++L      +  V  +  ++  
Sbjct: 763 FN-NAKDLKATLLKFIGEHDEMRKEIEKFQAQAVERVKDELLKRAQNVNGVQVIKAVLP- 820

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAK 861
           ++    K +   L++ +   ++ ++G +   K  + ++ ++D++  +  NA  + R +AK
Sbjct: 821 LEPAAAKDLAFKLRETLNEKLVAVIGSTAGDKPLLTVMFSDDMVKDYALNAGKIIREAAK 880

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           ++ GG GGG+PH AQ+GG N      A+  V   + 
Sbjct: 881 LIQGG-GGGQPHYAQAGGKNIEGISAAVDKVIELVN 915


>gi|33866890|ref|NP_898449.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|41018174|sp|Q7U3R9|SYA_SYNPX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33639491|emb|CAE08875.1| Alanyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 889

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/892 (35%), Positives = 485/892 (54%), Gaps = 53/892 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL F+ + GH+ + S+SLIP  DPT++ T +GM+PFK +F GQ++      T
Sbjct: 16  SGEDIREAFLNFYAERGHQRMASASLIPE-DPTVLLTIAGMLPFKPVFLGQQQRPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ + +D 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTQVYGIDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           R L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 RNLVVSVFREDDEAEQIWRDVVGVNTKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 191 L-GDDGIDLEDDDRFIEFYNLVFMQYNRDAEGNLTPLANRNIDTGMGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+  +  + Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAADLACVDYAQLDDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P ++ +  A    +  A+P +I+ + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGIDKPFLVTMGEAAIDLLKGAHPGVIERQEVILAELQREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+   +   ++G  AF+LYDT+G PL++ Q+I   +    +D+  F 
Sbjct: 370 ETLERGEKLLAEVLAS--RPTQISGAQAFELYDTYGFPLELTQEIAEEQ-RITVDLDGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+EEQR RA+A ++ +     + I   +     AT F GYD L                
Sbjct: 427 VAMEEQRQRAKAAAVSIDLTLQDAI-EQVAGDQPATAFKGYDALDHP------------- 472

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+A+V  G     A +G  V+VV D TPFY E GGQ+GD G   G  +
Sbjct: 473 ----------STVQALVVNGAPASTASAGDVVQVVLDSTPFYGEGGGQVGDRGSLSGVDV 522

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +   D   ++  +FVH   +ERG L    ++   +D   RR+   NH+ATHLL  AL  
Sbjct: 523 -IVAIDSVSRSRDVFVHSGRMERGHLAVGDTVNAQVDRSCRRRAQANHTATHLLQAALKQ 581

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD      +T+ +L  IE  +N  IA+   +  + M  + A
Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHCPTAVTAEQLAQIETLINGWIAEAHCLEVQEMAIDQA 641

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV+ES + AG
Sbjct: 642 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESGVAAG 696

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-----IH 774
           IRRIEA+ G    ++L  +D  +K L    K     +V RV  + EE +           
Sbjct: 697 IRRIEAVAGPAVLAYLNERDAVVKQLGDRFKAQPAEIVDRVTALQEELKATGKALAAAQA 756

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
                +          + +   +   +  V+   L+    +L  ++  G  +++G   + 
Sbjct: 757 ELAVAKAGALAAKAEAVGEFQLLVERLDGVEGAGLQGAAQSLADQLGDGAAVVIGGLPDP 816

Query: 834 ---KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
               K  ++    + ++  +  A       AK  GGGG GGRP++AQ+GG +
Sbjct: 817 GDLGKVILVAAFGKQVIAAKLQAGKFIGGIAKQCGGGG-GGRPNLAQAGGRD 867


>gi|281420549|ref|ZP_06251548.1| alanine--tRNA ligase [Prevotella copri DSM 18205]
 gi|281405322|gb|EFB36002.1| alanine--tRNA ligase [Prevotella copri DSM 18205]
          Length = 887

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/936 (34%), Positives = 489/936 (52%), Gaps = 89/936 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-VYQ 59
           M   + +R +F +FF+  GH+++PS+ ++  +DPTLMFTN+GM  +K+I  G + P    
Sbjct: 1   MMTANEVRESFKKFFEGKGHKIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI +AW+ LT+   
Sbjct: 61  RRVDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDMAWEYLTEILK 120

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L+   LY+TV++         D EA   W K   + AD II    +DNFW M +TGPCGP
Sbjct: 121 LNPADLYVTVFEGSKEEGLERDNEAAGYWAK--HVPADHIINGNKHDNFWEMGDTGPCGP 178

Query: 172 CSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D    + +    G    +++  + IEIWN+VFMQ+ ++       LP   IDTG
Sbjct: 179 CSEIHVDSRTPEEKAQVPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNH 272
           MG ER+  +LQ+K +NYD D+F+ +I+  E ++G KY                    +  
Sbjct: 239 MGFERLVRMLQDKHSNYDTDIFQPIIKEIEAISGKKYGFTTPTGENGEGKDEQEKIDIAM 298

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331
           RV  DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  +  M  L+  L  
Sbjct: 299 RVCADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVNVLVE 358

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFK 389
           +MG+A+PEL   + LI   ++ E++ F +TL++G+ LL+G +  L       L+G  AF+
Sbjct: 359 QMGAAFPELPAQQELITRVMKEEEDSFLRTLEKGINLLNGDMDELKAHGKTQLDGVSAFR 418

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           L+DT+G PLD+ + I    G   +D   FN+ +++Q+ RAR       +      W  LK
Sbjct: 419 LFDTYGFPLDLTELICRENGYT-VDAAGFNEEMKKQKERARNA-----AAVENGDWEVLK 472

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           E  G   F+GYD       +   RKV  +K                              
Sbjct: 473 E--GDQNFVGYDYTEYECHILRYRKVTQKKNSF--------------------------- 503

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             E+V D TPFY E GGQ+GD G  + +   +Q+ D +++          V+        
Sbjct: 504 -YELVLDNTPFYGEMGGQVGDKGVLVSENETIQVIDTKRENNQSIHI---VKELPKDVNA 559

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             +  +D +NR   + NH+ATHLL + L  +LG HV Q GS +  D LRFD +H + +T 
Sbjct: 560 DFMACVDIENREGSAANHTATHLLDYCLKQVLGDHVEQKGSYVDKDTLRFDFSHFQKVTD 619

Query: 630 AELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            EL+ +E  VN++I  + P+   R    E+A   GA AL G KY D+VRVV         
Sbjct: 620 EELRKVEHMVNEMIRADYPLDEHRDTPIEEAKELGAIALFGEKYGDKVRVVRFGP----- 674

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S+  CGG H   TG+I    I+SESS+ AGIRRIEA+TG+     + G  + + +L   
Sbjct: 675 -SAEFCGGIHAKGTGKIGFFKIISESSVAAGIRRIEALTGKACEEAIYGLQDTIVALKGL 733

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISE 803
              +  ++ G + +  +E+  L+    K + Q           +  +I  V  ++ ++  
Sbjct: 734 FN-NAKDLEGVIRKYIDEHDALKKDVEKFQAQAVERAKDKLVENAKEINGVKVVTAVLP- 791

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAK 861
           ++    K ++  +++ +   +I +VG     K  + ++ ++D++     NA  + R +AK
Sbjct: 792 MEPAAAKDLVFKVREALPENMICVVGSVYNDKPMLSVMFSDDMVKDHGLNAGKMIREAAK 851

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           ++ GG GGG+PH AQ+GG N +    A+  V    +
Sbjct: 852 LIQGG-GGGQPHYAQAGGKNKDGLSAAVDKVVELAQ 886


>gi|15827174|ref|NP_301437.1| alanyl-tRNA synthetase [Mycobacterium leprae TN]
 gi|221229652|ref|YP_002503068.1| alanyl-tRNA synthetase [Mycobacterium leprae Br4923]
 gi|20532262|sp|Q9CCT0|SYA_MYCLE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13092722|emb|CAC30020.1| alanyl-tRNA synthetase [Mycobacterium leprae]
 gi|219932759|emb|CAR70605.1| alanyl-tRNA synthetase [Mycobacterium leprae Br4923]
          Length = 908

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/942 (34%), Positives = 478/942 (50%), Gaps = 81/942 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQCTPPYATA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D+VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDDVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSFADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ TVY +D+EA  LW++I+GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERLWATVYLDDDEAAGLWQEIAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMG 229
           +D+G    P G P  +E+  RY+E+WNLVFMQ E+         + R  LP+ +IDTGMG
Sbjct: 176 YDRGPEFGPEGGPIVNED--RYLEVWNLVFMQNERGEGTTKEDYEIRGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------EGNNIVNHRVIVDHLRSS 282
           +ER+A VLQ   N Y+IDL + +I          Y          + V +R+I DH R++
Sbjct: 234 VERIALVLQGVHNVYEIDLLRPVIDLVATRAPRPYDPENEDTNHADNVRYRIIADHSRTA 293

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           + LI DG+ P N+GRGYVLRR++RR +  A+LLG   P++  L+  +C  MG AYP L+ 
Sbjct: 294 AILIGDGVSPVNDGRGYVLRRLLRRIIRSAKLLGIDSPIVGDLMATVCNAMGRAYPGLVT 353

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDI 400
               I     +E+  F +TL  G  L D V+         ++ G  AF L+DT+G P+++
Sbjct: 354 DFDRINRIAVAEETAFNRTLTSGSKLFDDVVGATVASGSTVVAGLDAFTLHDTYGFPIEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D   F++ + +QR RA+  +        +   +      G T+F G+
Sbjct: 414 TLEMAAEAGLT-VDEKGFHELMLQQRQRAKVDAAARKQAHVDLTAYRELVDAGPTEFTGF 472

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQ-----KVE 512
           D L                          + +  I  +G+    V  AV GQ     +VE
Sbjct: 473 DEL-----------------------TTEARILGIFVEGKRVPVVAHAVRGQAGITNRVE 509

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +V D+TP YAE+GGQ+ D G   G G     R  +TDVQK A+ + VH   +E G     
Sbjct: 510 LVLDRTPLYAESGGQIADAGTISGIGAGASSRAAVTDVQKIAKTLHVHRVNLESGEFVEG 569

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++V  +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD      +T
Sbjct: 570 DTVVAVVDPGWRRGAAQGHSGTHIVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGSLT 629

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +   IE+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG 
Sbjct: 630 GEQRTQIEEVTNEAVQADFEVHTFTEKLDTAKAMGAIALFGEAYPDEVRVVEM----GGP 685

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S  LCGGTHV +T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS 
Sbjct: 686 FSLELCGGTHVHNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASS 745

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-----EDLSCHKIADVNFMSHIISE 803
           L+V    V  RV  + E  +  +    + +                 I +V  +   +S 
Sbjct: 746 LQVPSEEVHARVATLVERLKAAEKELERARQANVQAAATKAAAGAEWIGNVRVVVQRMSG 805

Query: 804 -VDSKELKSVMDALQKKIQS--GIIMLVGISKEKK---ASVLIVVTEDLLD-RFNAVDLA 856
            +   +L+ ++  ++ K+ S   ++ L+ ++ +         +       D    A DL 
Sbjct: 806 PIAPDDLRFLVGDIRGKLGSDPAVVALIAVTSDGPTATVPYAVAANPAAQDLGIRANDLV 865

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              A ++  G GGG+  +AQ  G +    D A+  V + + +
Sbjct: 866 EQLA-MVVDGRGGGKADLAQGSGKDPTGIDAALDTVRAQIAQ 906


>gi|329943212|ref|ZP_08291986.1| alanyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|313848364|emb|CBY17368.1| putative alanyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325507370|gb|ADZ19008.1| alanyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328814759|gb|EGF84749.1| alanyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|328915050|gb|AEB55883.1| alanyl-tRNA synthetase [Chlamydophila psittaci 6BC]
          Length = 875

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/897 (36%), Positives = 492/897 (54%), Gaps = 48/897 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H ++ SS + P NDP+++FTN+GM  FK+IF  +E   Y   
Sbjct: 1   MLSNTLRSNFLKFYANRHHTIVSSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI  AW++    F+ D
Sbjct: 61  TTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+Y TV+++D+EAF LW     L +++I R+T  DNFWSMAETGPCG CSE+ FD+GE
Sbjct: 121 PDRIYATVHEKDDEAFALW--ERHLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGE 178

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    EGER++E WNLVFM+F +  +     LP   +DTG GLER+ +++   
Sbjct: 179 QFGKAASPLEDSEGERFLEYWNLVFMEFNRSAEGSLLALPNKHVDTGAGLERLVSIISGT 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ + LI  +E+++G KY  +       RVI DH+RS SF IADG++P N  RG
Sbjct: 239 DTVFEADVLRLLISKTEELSGKKYHPDEALGAAFRVIADHVRSLSFAIADGLIPGNTERG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RR++ Y + LG+T+P +  ++PAL   MG AYPEL  +   I+E +  E+E +
Sbjct: 299 YVLRKILRRSVNYGKRLGFTKPFLAEIVPALVDAMGEAYPELRLSASQIQEVMTIEEENY 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            K+L RG  LL  VL       I++G+ AFKL DT+GLPLD +  +      + +D+ +F
Sbjct: 359 FKSLHRGGNLLQQVLKSSSSSSIISGEDAFKLKDTYGLPLDEIALLAKDYDFS-VDLDTF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            Q  +E + R+R +       TT+ ++ SL     +T F+GY+ L    F          
Sbjct: 418 YQLEKEAKERSRKNIAK-SHNTTDTVYDSLSLGENST-FVGYNDLSCDTF---------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++AI++ GE V      +K  ++  +TPFYAE GGQ+GD+G      
Sbjct: 466 -------------IEAIIKDGEQVPYLKEKEKGILILKETPFYAEKGGQVGDSGEIFCSD 512

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       GI +HH  V +G L    ++   +    R+ +S NH+  HLLH AL 
Sbjct: 513 GTFVVSHTTSPKAGIVIHHGEVSQGQLCPAQAVTAQVHCLRRKNISNNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH K I   +L SIE  VN+ I +N  V TR  +  D
Sbjct: 573 MTLGDHIRQAGSFVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREASYSD 632

Query: 659 -AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
              +       G KY+D VRVVS         S  LCGGTH   TG++    I+ E ++ 
Sbjct: 633 VMNSKEIKQFFGDKYSDIVRVVSAG------FSHELCGGTHAEFTGDLGCFRILKEHAVA 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEA+TG+ A        + L  +A  L+  +  ++ +++ I +E ++   + +  
Sbjct: 687 TGIRRIEAVTGKEAEVLARQDTQDLNEIALILQSPRDQILNKLQNILDEKKEQTKLISDL 746

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L    L        ++ DV++  H + E +S  L+   + L +KI + ++ L    K
Sbjct: 747 ENKLIYSLLDKVIDRCQQVEDVSYFIHHLPESESHRLQQYANCLHQKIPARLVSLWTTQK 806

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             K  +   +++DL+     A DL ++      GG  GG+   AQ      +   +A
Sbjct: 807 NGKYIIFSRISDDLVKQGLQAKDLLKILLTPC-GGRWGGKDIFAQGS---ADSLPEA 859


>gi|297624147|ref|YP_003705581.1| alanyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165327|gb|ADI15038.1| alanyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 917

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/924 (37%), Positives = 503/924 (54%), Gaps = 62/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           ++  ++R  FLEFF+  GH + PS+ L   +DP L+F  +GM  FK  F G         
Sbjct: 22  TSPDALRRKFLEFFRSKGHLIYPSAPL-KSDDPGLLFNVAGMQQFKPYFQGATPKFPGVE 80

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
            V+  V T QKC+RAGGK +D++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+ LT
Sbjct: 81  GVWPRVATSQKCMRAGGKDSDIENVGRTRRHHTFFEMLGNFSFGDYFKREAIGWAWEFLT 140

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-----ETGP 168
             +   LD  RLY TVY +D+EA+ +WK   GL   ++ R    +NFW         +GP
Sbjct: 141 APEWLGLDPERLYATVYLDDDEAYNIWKDEVGLPEARLSRFGEGENFWPANAIKDERSGP 200

Query: 169 CGPCSEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           CGPCSEIF+D+G               G+R++EIWNLVF QF          LP+ +IDT
Sbjct: 201 CGPCSEIFYDRGPAYGSPDETGPNTGSGDRFVEIWNLVFTQFN-LENGVLTPLPQQNIDT 259

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           G GLER A V+ +  + Y  +LF+ +I+  E+++G+ Y     V+HR+I DH+RS S  I
Sbjct: 260 GAGLERFAAVIADVKDAYATELFQPIIRRLERLSGVPYRDLESVHHRIIADHVRSVSMCI 319

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADGILPAN+G GYV++ ++RRA   A LLG  EP++  L+  +   MG AYPE+  A+  
Sbjct: 320 ADGILPANDGAGYVIKMLLRRASRQAYLLGLREPVLHQLVSGVVEAMGEAYPEVKDAQAR 379

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE  +R+E+E F +TL+ G+  + G+L  LG  + L GDVAF L+ T+G PLD+ +++  
Sbjct: 380 IEGIVRAEEESFLRTLESGIARVSGLLDELG-GDTLPGDVAFDLWQTYGFPLDLTEEMAQ 438

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG   +D   +  A E  RS +RA            ++  L E +G T F+GY      
Sbjct: 439 ERG-VRVDREGYAHAREAARSLSRAARGEGALFGGTDVFGQLAEAHGETAFVGY------ 491

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V+A+VQ GE V EA  G  V+VV D TPFYAE GG
Sbjct: 492 -----------------SARDAEAAVRALVQGGEAVSEAGEGTHVQVVLDTTPFYAEGGG 534

Query: 527 QLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           Q+GD G           +  +T   K   G+ VHHA V RG L+T   +   +D      
Sbjct: 535 QVGDAGVLEWRGGDHEGKALVTTTTKTKGGVVVHHARVLRGTLKTGQRVRAAVDPSRTE- 593

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              +H+ATHLLH AL ++LG+HV+Q GS + P+ LRFD +H +P++ +EL+ +E  VN  
Sbjct: 594 TEKHHTATHLLHAALRSVLGTHVAQAGSLVAPERLRFDFSHPQPLSESELRRLEALVNRW 653

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS--ALCGGTHVS 700
           I  +  V  R++  E+A A+GA  L G KY   VR+VSV  E     S    LCGGTHV+
Sbjct: 654 IQADFTVSWRVVPLEEARAAGAMMLFGEKYGANVRMVSVTPERDPKSSVSTELCGGTHVA 713

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG + +  I  E ++ AG+RR+EA+ G+ A S+L      L + A  L V+ G +  R+
Sbjct: 714 RTGTLGVFVITGEEAVSAGVRRVEALVGEAALSYLADLRATLAAAAKSLGVTPGELGPRL 773

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVMD 814
           E +  + +  Q   A+ + +L          L   +    ++    +  +D+  L+   D
Sbjct: 774 ERLQSDLKAAQRTAAELRDRLAAAQTAGESGLEVSEAGGFSYAVAQLGGLDASALRGAAD 833

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
            L  +  + ++++          +++  ++    R  +A  L    A+  GGGG GGRP+
Sbjct: 834 RLLARSGADLVVVGS-----GPLLVVKASDAAQARGAHAGRLVGEIARRAGGGG-GGRPN 887

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           +AQ+G  +  +  +A+A +   L+
Sbjct: 888 LAQAGVKDPAQLGRALAALPDILE 911


>gi|89897947|ref|YP_515057.1| alanyl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|123483857|sp|Q255X6|SYA_CHLFF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89331319|dbj|BAE80912.1| alanyl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 875

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/887 (36%), Positives = 489/887 (55%), Gaps = 45/887 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H ++PSS + P NDP+++FTN+GM  FK+IF  +E   Y   
Sbjct: 1   MLSNTLRSNFLKFYANRHHAIVPSSPIFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFK++AI  AW++    F+ D
Sbjct: 61  TTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKKQAIAFAWEVSLSVFNFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              +Y TV+++D+EAF LW     L +++I R+T  DNFWSMAETGPCG CSE+ FD+G 
Sbjct: 121 PNLIYATVHEKDDEAFALW--EQHLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGA 178

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    +GER++E WNLVFM+F +        LP   +DTG GLER+ +++   
Sbjct: 179 NFGKATSPLEDTDGERFLEYWNLVFMEFNRTADGSLLSLPSKHVDTGAGLERLVSIISGT 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ + LI  +E+++G KY  +       RVI DH RS SF IADG+LP N  RG
Sbjct: 239 NTVFEADVLRLLISKTEELSGKKYHEDEALGAAFRVIADHTRSLSFAIADGLLPGNTERG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RR++ Y + LG+T+P +  ++P+L   MG AYPEL  +   I+E + +E+E +
Sbjct: 299 YVLRKILRRSVNYGKRLGFTKPFLAEIVPSLVDSMGEAYPELRLSLSQIQEVMTTEEENY 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            K+L RG  LL  VL       +++G+ AFKL DT+GLPLD +  +      + +D+ +F
Sbjct: 359 FKSLHRGGNLLQQVLKSSSTSSLISGEDAFKLKDTYGLPLDEIALLAKDYNFS-VDLETF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            Q  +E + R+R +        T+ I+ SL      ++FIGY+ L    F          
Sbjct: 418 YQLEKEAKERSRKNIAK-SQNATDAIYDSLS-LGENSEFIGYNDLSCDTF---------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++AIV +G+ V      +K  ++   TPFYAE GGQ+GD+G      
Sbjct: 466 -------------IEAIVSEGKQVSSLQEKEKGALILKSTPFYAEKGGQIGDSGEIFCSD 512

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       GI +HH  V +G L    ++   ++   R+++S NH+  HLLH AL 
Sbjct: 513 GTFVVSHTTSPKAGIVIHHGEVSQGQLSQAQAVTTQVNCIRRKRISNNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH K I+  +L SIE  VN+ I +N  V TR     D
Sbjct: 573 MTLGDHIRQAGSYVDDSKIRLDFTHPKAISPEDLASIELLVNEKIRENHQVETRNTLYSD 632

Query: 659 -AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
              +       G KY+D VRVVS         S  LCGGTH   TG++    I+ E ++ 
Sbjct: 633 VVNSKEIKQFFGDKYSDVVRVVSAG------FSHELCGGTHAEFTGDLGYFRILKEHAVA 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEA+TG+ A       +E L  +A  L+  +  ++ +++ I EE ++     ++ 
Sbjct: 687 TGIRRIEAVTGKEAEILAHQDNEDLNEIALILQSPRDQILHKLQNILEEKKEQAKQISEL 746

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L    L        ++ DV+F+ H + E +S  L+   + L +KI S +I L    K
Sbjct: 747 ETKLIHSLLDKLIDHCQQVNDVSFLIHHLPESESHRLQQYANCLHQKIPSRLISLWTTQK 806

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             K  +   +++DL+     A DL ++      GG  GG+   AQ  
Sbjct: 807 NGKYIIFSRISDDLIKQGLQAKDLLKILLAPC-GGRWGGKDIFAQGS 852


>gi|325479403|gb|EGC82499.1| alanine--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 870

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/911 (35%), Positives = 509/911 (55%), Gaps = 56/911 (6%)

Query: 1   MSNV--SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M N+  + +R+ +L FF  +NGH LL S  LIP +D +L+  N+GM P K  FTG++K  
Sbjct: 1   MKNLGMNELRSKYLNFFANENGHTLLKSFPLIPVDDDSLLLINAGMAPLKKYFTGEKKMK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T+ QKCVR      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  A+  LTKE
Sbjct: 61  NNRATSSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAITWAYQFLTKE 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
            ++ +  +++TV+ ED+EA+ +W    GL +++I+R    DNFW + E GPCGPCSEIF 
Sbjct: 117 LEISKDDIWVTVFKEDDEAYNIWHDEIGLDSERILREGKEDNFWEL-EVGPCGPCSEIFV 175

Query: 178 DQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           D+G             +++ +R++E+WNLVF QF +  +     L   +IDTGMGLER+A
Sbjct: 176 DRGSDRAVDENDVKPGNDDSDRFMEVWNLVFTQFNKDAQGNYTPLAHPNIDTGMGLERIA 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILP 292
            VLQ K N +++D+   +I   E++ G+KY+ +    V+ RVI DH ++ +FL+ADG++P
Sbjct: 236 MVLQNKDNIFEVDVMVEIISEIERLAGIKYKEDKKADVSIRVIADHAKAMTFLVADGVIP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRR++RRA  + +LLG     + +++  +       Y EL + +  I+E ++
Sbjct: 296 SNEKRGYVLRRLIRRAYRHGKLLGIEGEFLTNIIDKVIDTYKVEYEELAKNREKIKEIIK 355

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF KT+D+GL  L+ ++S +     ++LNG+ AFKLYDT+G PLD+ ++IL  + L
Sbjct: 356 DEEDRFQKTIDQGLERLEVLISDMEEENKDVLNGEEAFKLYDTYGFPLDLTKEILEEKNL 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   FN+ +  Q+  AR         + + +     +    T F+GYD L       
Sbjct: 416 K-VDEEVFNEQMNIQKQTARQARKKDAGWSLDNLNT---DGIRKTDFVGYDDLD------ 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                            V   +  I  + + V     G K  ++ D+T FYAE GG++ D
Sbjct: 466 -----------------VDGEILNIFVENDQVSSINEGSKGIIISDKTSFYAEGGGEVAD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D    ++ DVQK  +  F +   V  G +    +    +D   R  +  NHSAT
Sbjct: 509 TGFISSDNFEAKVMDVQKLKDIYFHY-VEVISGKISINDTAKFKVDRDKRFDIQRNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG  + Q GS +  + LRFD TH+K + + EL+ +ED VN+ IA+   V 
Sbjct: 568 HLLDQALRDVLGESIKQAGSLVDENKLRFDFTHNKALLTEELRQVEDIVNNEIAKQNFVK 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +++ + +   GA  L   KY D+VRVVS+     G +S  LCGG HV+ T +I++  I
Sbjct: 628 KEVVDYKKSQEMGAIGLFEDKYKDKVRVVSM-----GDYSKELCGGCHVNYTSDILMFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V ESS+ AG+RRIEAITG++A   L   D+ +K++A+ L  +  N+  R++ I +E    
Sbjct: 683 VQESSVSAGVRRIEAITGRKAYELLQNSDKSIKTIANKLNTNVNNISNRIDSIEKEIENY 742

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   ++ K   + + +     S   +  +N +          EL+   + ++    + II
Sbjct: 743 KSEISRLKSTNSSDIISDLKNSVRNVKGINLLVKKFENASMDELREYENRIKNSFDNMII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   +S   K    + V + L+D+++A  + R  A+V GG G GG+ + AQ+GG + +K 
Sbjct: 803 IFASVS--DKIVFTVSVDDKLVDKYDAGKIVREIAQVTGGNG-GGKKNFAQAGGKDISKL 859

Query: 886 DQAIAGVASFL 896
           D+A+  V   +
Sbjct: 860 DEALNKVNEII 870


>gi|241896592|ref|ZP_04783888.1| alanyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
 gi|241870184|gb|EER73935.1| alanyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
          Length = 888

 Score =  730 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/920 (34%), Positives = 484/920 (52%), Gaps = 61/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R+ FL FF+  GH++ PS SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 7   MKELSSAEVRSLFLRFFESKGHKIEPSQSLIPQNDPTLLWINSGVATLKKYFDGSVVPEN 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG T RHHT FEM+GNFS G YFKE AI  AW+LLT  +
Sbjct: 67  HRITNAQKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEAIPWAWELLTSPE 122

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +D  +LY+TVY  D++A  +W    GL  D +      DNFW + E GP GP SEIF
Sbjct: 123 WFGMDPDKLYVTVYPNDDQAKDIWLHKVGLPKDHLYE--EPDNFWDIGE-GPSGPDSEIF 179

Query: 177 FDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTGMG 229
           +D+GE         +    E ERY+EIWNLVF QF       + ++   LP  +IDTGMG
Sbjct: 180 YDRGEEFNDPDEAENYPGGENERYLEIWNLVFSQFNHLPGLTDNKDYPELPTKNIDTGMG 239

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           LER+ +V Q    N++ DLF  LI  +E ++   KY  ++   ++ +VI DH+R+ +F I
Sbjct: 240 LERVVSVFQHAKTNFETDLFLPLIHKTEDISGQFKYGEDDTKDISFKVIADHIRAVTFAI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGY++RR++RRA+ + R LG ++  +  L+P +   M S YPE+ +    
Sbjct: 300 GDGALPSNEGRGYIIRRLLRRAVLHGRKLGISQVFLKDLVPVVGEIMISYYPEIAKNADY 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDIL 405
           I   + +E+ RF KTL  GL LLD V+      + I++G +AFKLYDT+G P ++ ++  
Sbjct: 360 IASIVEAEEIRFNKTLTDGLSLLDDVIEQAKSKKGIIDGAIAFKLYDTYGFPYELTEEYA 419

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D   F++ ++ Q+ RAR+      S   +    +  +    +Q++G+  L  
Sbjct: 420 TDEGLK-VDRDGFDEQMKAQQERARSARSNKASMGVQNELLTGLKT--PSQYVGWSELTV 476

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + +  ++   ++VEEA +GQ V+ +F +TPFYAE G
Sbjct: 477 E----------------------QTELVNLIVDNKLVEEANAGQ-VQAIFAKTPFYAEMG 513

Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    +  + +      + A      H +     L       L +D      +S
Sbjct: 514 GQVADLGMIYDESGQAVAKVTDVQNAPNGQHLHTLSIIAPLFVGKQYKLDVDRPYHVAVS 573

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL   L  +LG H +Q GS +T +GLR+D T++  + S +L+ +ED +N  I 
Sbjct: 574 KNHTATHLLDQTLRNVLGEHTTQAGSLVTAEGLRYDFTYNGAVPSEKLQEVEDIINQKII 633

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            NLP+     + E A   GA A+   KY ++VRVVS+     G +++   GGTH +ST E
Sbjct: 634 DNLPISWIETDIESAKKLGAVAVFTEKYGEKVRVVSI-----GDYNAEFDGGTHANSTAE 688

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + +  IV E    AG+RRIEA+TG  A +     D  L   A  +K  Q   +  ++  +
Sbjct: 689 LGMFKIVGEQGTGAGVRRIEAVTGSGAMALFKLHDSWLAKAAEQVKAPQLSEINDKISGL 748

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQK 818
               ++ +   A  + +L  ++         KI +   ++  ++      L+S  D  ++
Sbjct: 749 QTALKEAERQAASLEQKLANQEADAAFANPQKINNYTLIATEMAVESMDVLRSTADTWKQ 808

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
              S +++L     +K   ++ V  E +     A DL +  A  +GGGG GGRP MAQ+G
Sbjct: 809 STPSDVLVLAANLGDKVNLLVAVAPEAVKKGIKAGDLVKSIAPAIGGGG-GGRPDMAQAG 867

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      A    A +L++
Sbjct: 868 GKNPAGIADAFKQAADWLQE 887


>gi|288927362|ref|ZP_06421209.1| tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330196|gb|EFC68780.1| tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 872

 Score =  730 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/919 (35%), Positives = 486/919 (52%), Gaps = 75/919 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F +FF+  GH++  S+ ++  +DPTLMFTN+GM  +K+I  G   P  +  
Sbjct: 1   MTANEIRDSFKQFFEGKGHKIEASAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK  AI  AW+ L     L+
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKREAIDYAWEYLVDVLHLN 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY+TV++         D+EA + W K   L AD II    +DNFW M ETGPCGPCS
Sbjct: 121 PQDLYVTVFEGSEEEGIPRDDEAAEYWSK--HLPADHIINGNKHDNFWEMGETGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    +++  + IEIWN+VFMQF +++      LP   IDTGMG
Sbjct: 179 EIHLDSRSAKEKAEVPGASLVNKDNPQVIEIWNIVFMQFNRKSDGSLQPLPMHVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   LQ KT+NYD D+F+ +IQ   Q++G+KY  +    V  RVI DHLR+ +F IA
Sbjct: 239 FERLVRSLQGKTSNYDTDVFQPVIQEISQLSGLKYGEDEKVDVAMRVIADHLRAVAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP N   GYV+RRI+RRA+ YA   LG     M  LLP    EMG AYPEL   + L
Sbjct: 299 DGQLPGNAKAGYVIRRILRRAVRYAYTFLGQRSAFMFKLLPTFIHEMGEAYPELKAQREL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I   ++ E++ F +TL++G+ +L+  +          L+G  AF+L+DT+G PLD+ + I
Sbjct: 359 IGRVMKEEEDAFLRTLEKGISMLNDEMERLKAEGKTTLDGTQAFRLFDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F+  +++Q+ RAR       +      W  L+E  G   F+GYD   
Sbjct: 419 CRENGL-QVDAAQFDVEMQKQKERARNA-----AAVENSDWVVLRE--GEQNFVGYDYTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R+V  +K                                E+V D TPFY E 
Sbjct: 471 YECRILRYRQVTQKKNTY----------------------------FELVLDNTPFYGEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G  +     + I D +++          V+      +   +  +D   R   +
Sbjct: 503 GGQVGDCGVLVNGEETVDIIDTKRENNQSIHI---VKALPKDPKADFMACVDTDKREASA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL +AL  +LG HV Q GS + PD LRFD +H + +T  EL+ +E  VND+I 
Sbjct: 560 ANHTATHLLDYALKAVLGEHVEQKGSLVAPDTLRFDFSHFQKVTDEELREVERLVNDLIR 619

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           Q+LP+   R    E+A A GA AL G KY D VRVV          S   CGG H  STG
Sbjct: 620 QDLPLDEHRNTPLEEAKAMGAVALFGEKYGDTVRVVRFGP------SCEFCGGIHARSTG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I +  IVSESS+ +G+RR+EA+TG+R    +   ++ ++ + +    +  ++ G + + 
Sbjct: 674 RIGMFKIVSESSVASGVRRVEALTGKRCEEAMYALEDTIRGIRNLFN-NAKDLQGVIAKY 732

Query: 764 WEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE+  ++    K   Q      +    +   +  +  +  ++  +++++ K+++  +++
Sbjct: 733 MEEHDAMRKEIEKFSAQAVERLKDSLVANAKDVNGLKVVKAVLP-INAEQAKNLVFKVRE 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            I   ++ +VG +   K  + I+ ++D++     NA  + R +AK++ GG GGG+PH A 
Sbjct: 792 AIPQHLVCVVGSTANDKPLLSIMFSDDVVSEHGLNAGQIIREAAKLIQGG-GGGQPHYAS 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+      
Sbjct: 851 AGGKNLDGISVAVDKAVEL 869


>gi|125624689|ref|YP_001033172.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363]
 gi|205830128|sp|A2RME6|SYA_LACLM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|124493497|emb|CAL98475.1| AlaS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071483|gb|ADJ60883.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 872

 Score =  730 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/915 (34%), Positives = 478/915 (52%), Gaps = 67/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF+  GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF+  AI  AW+LLT  + F+
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFE 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT Y  D++ +  W +  G+    ++ I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYITYYPADKDTYNRWVE-VGVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE                E +RYIEIWN+V  QF       + E   LP+ +IDTGMGLE
Sbjct: 176 GEIYDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGI 290
           RM  ++Q    N+D DLF  +I+  E+++G  Y   +  ++ +VI DH+RS SF I DG 
Sbjct: 236 RMVCIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  I + 
Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E+E F +T+D G  L+D +L +L  +    + G   F+LYDT+G P+++ +++    
Sbjct: 356 IDREEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADIFRLYDTYGFPVELTEELAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   I+   F  A++ Q+ RARA  +  GS   +    +L      ++F+ Y+       
Sbjct: 416 GFK-IEHEGFKVAMKAQQDRARAAVVKGGSMGAQN--ETLSSIEVDSKFL-YED------ 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +   ++  E+V+E     K ++VFD TPFYAE GGQ+
Sbjct: 466 -----------------KKAQAKLLVAIKDDELVDEVTG--KAQLVFDVTPFYAEMGGQV 506

Query: 529 GDTGCAIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G       ++  T    + A      H++     L+   +  L ID + R  +  NH
Sbjct: 507 ADHGVIKNADGQVVATVLDVQHAPHGQNLHSVETISPLKVGETYTLEIDEERRSAVVKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH   ++  EL  IE  VN++I Q+L
Sbjct: 567 TATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVSKEELAEIERQVNEVIWQSL 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T       A   GA AL G KY   VRVV +     G +S  LCGGTH  +T EI L
Sbjct: 627 KVETIETYIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIGL 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             I+ E  I +G+RRI A+TGQ+A       +  L  +A  +K  Q   +V +V  + +E
Sbjct: 682 FKIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVAGLVKAPQASQIVAKVSNLQDE 741

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +  Q  +     +L          +  +   V+F++  ++  D+K L+++ D  ++K  
Sbjct: 742 LKAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDAKGLRNLADIWKQKEL 801

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S I++LV    E K S+L+  ++ L     A +L +  A  +  G GGG+P MA +GG N
Sbjct: 802 SDILVLVATIGE-KVSLLVA-SKSL--DVKAGNLVKELAPFV-DGRGGGKPDMAMAGGSN 856

Query: 882 GNKADQAIAGVASFL 896
                + +  VA  L
Sbjct: 857 AAGIPELLTAVAEKL 871


>gi|116512579|ref|YP_811486.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
 gi|123320246|sp|Q02XE9|SYA_LACLS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116108233|gb|ABJ73373.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
          Length = 872

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/915 (34%), Positives = 476/915 (52%), Gaps = 67/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF+  GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF+  AI  AW+LLT  + F+
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFE 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT Y  D++ +  W +  G+    ++ I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYITYYPADKDTYNRWVE-VGVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE                E +RYIEIWN+V  QF       + E   LP+ +IDTGMGLE
Sbjct: 176 GEIYDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGI 290
           RM  ++Q    N+D DLF  +I+  E+++G+ Y   +  ++ +VI DH+RS SF I DG 
Sbjct: 236 RMVCIIQGGKTNFDTDLFLPIIREIEKLSGITYSPDSENMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  I + 
Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E+E F +T+D G  L+D +L +L  +    + G   F+LYDT+G P+++ +++    
Sbjct: 356 IDREEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADIFRLYDTYGFPVELTEELAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   ID   F  A++ Q+ RARA  +  GS   +    +L      ++F+ Y+  +    
Sbjct: 416 GFK-IDHEGFKVAMKAQQDRARAAVVKGGSMGAQN--ETLSSIEVDSKFL-YEDKKS--- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +   ++  E+V+E     K ++VFD TPFYAE GGQ+
Sbjct: 469 --------------------QAKLLVAIKDDELVDEVTG--KAQLVFDVTPFYAEMGGQV 506

Query: 529 GDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      + A      H++     L+   +  L ID + R  +  NH
Sbjct: 507 ADHGVIKNADGQEVATVLDVQHAPHGQNLHSVETTSPLKVGETYTLEIDEERRSAVVKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH   +T  EL  IE  VN++I Q+L
Sbjct: 567 TATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSL 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   +   A   GA AL G KY   VRVV +     G +S  LCGGTH  +T +I L
Sbjct: 627 KVETIETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSQIGL 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             I+ E  I +G+RRI A+TGQ+A       +  L  +A  +K  Q   +V +V  + +E
Sbjct: 682 FKIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVAGLVKAPQASQIVAKVSNLQDE 741

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +  Q  +     +L          +  +   V+F++  ++  D+  L+++ D  ++K  
Sbjct: 742 LKAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDANGLRNLADIWKQKEL 801

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK + ++   + D      A +L +  A  +  G GGG+P MA +GG N
Sbjct: 802 SDVLVLVATIGEKVSLLVASKSSD----VKAGNLVKELAPFV-DGRGGGKPDMAMAGGSN 856

Query: 882 GNKADQAIAGVASFL 896
                + +  VA  L
Sbjct: 857 AAGIPELLTAVAEKL 871


>gi|301794425|emb|CBW36859.1| alanyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 872

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LL   +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLISPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T+ +SS + AIV     V     G    ++F +T FYAE G
Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|199598086|ref|ZP_03211509.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|258507762|ref|YP_003170513.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|199591012|gb|EDY99095.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|257147689|emb|CAR86662.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 881

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/916 (34%), Positives = 481/916 (52%), Gaps = 59/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K FD
Sbjct: 64  TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K  G++ D I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 FDPKRLYVTVYPKDKVTKELWRK-VGVADDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           G+                E  RY+EIWN+VF +            P  +IDTGMGLER+ 
Sbjct: 176 GQSFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIADGIL 291
            V+Q     ++ DLF  +I+A+E+++  K       + V+ ++I DH R+ +F I DG L
Sbjct: 236 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGANAQDDVSFKIIADHARTVTFAIGDGAL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++ +
Sbjct: 296 PSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQPFIQKVI 355

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409
            SE+ RF +TLD G+ LL+ +++ L +D    ++G  AFKL+DT+G P+++  +     G
Sbjct: 356 ESEEARFRQTLDAGVNLLNQIIAELKQDGKKEISGADAFKLFDTYGFPVEMTNEYAEDEG 415

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  F + +  QR RAR       S  ++     L +    ++F G+  L      
Sbjct: 416 LK-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDTV--LMDITTPSKFTGWTELDHKH-- 470

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + ++AIV   ++ +E  +GQ  +++FD+TPFYAE GGQ+ 
Sbjct: 471 --------------------ATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYAEMGGQVA 509

Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G        +       + A      H +  +  L       L++D   R+++S+NH+
Sbjct: 510 DHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKSKLTKGQPYWLSVDRLRRQKVSLNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I   LP
Sbjct: 570 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVNQKIWDALP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +  + M   +A   GA A+ G KY D VR+VS+     G ++    GGTH ++T  + L 
Sbjct: 630 ITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPTNTNALGLF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            I SES I AG+RR+EA+T + A  +L  Q + LK  A  LK+ Q  NV  +V ++  + 
Sbjct: 685 KITSESGIGAGVRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNVPSKVTQLQADL 744

Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +  Q   A  + +L  +  +        +     ++  +      EL+ + D  + K  S
Sbjct: 745 KTEQKTVAGLQAKLAAQAAAGIFDRAETVGGFKLIAKQVQVAGMNELRQLADEWKTKQAS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            I++L   +  K   ++            A DL +  A  +GGGG GGRP MAQ+GG   
Sbjct: 805 DILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKKP 863

Query: 883 NKADQAIAGVASFLKK 898
                A+A   + + +
Sbjct: 864 AGIPSALAEAKNVISQ 879


>gi|148985664|ref|ZP_01818818.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147922145|gb|EDK73267.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800251|emb|CBW32870.1| alanyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 872

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESAF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +T FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELALII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|224542880|ref|ZP_03683419.1| hypothetical protein CATMIT_02074 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524210|gb|EEF93315.1| hypothetical protein CATMIT_02074 [Catenibacterium mitsuokai DSM
           15897]
          Length = 868

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/914 (35%), Positives = 496/914 (54%), Gaps = 64/914 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     +  R  FLE+F+K GH + PS+SLIP +DPTL++ N+G+   K  F G EKP  
Sbjct: 1   MKKLTGNQTRALFLEYFKKQGHMVEPSASLIPHDDPTLLWINAGVAALKKYFDGTEKPAC 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  NRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKTEAIHFAWEFLTGEE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ +LYITVY +DE+A+ +W K  G+    I++  T DNFW +   GP GP SEIF
Sbjct: 117 WLAFDKDKLYITVYTDDEDAYNVWTKECGVDPSHILK--TADNFWEIG-AGPGGPDSEIF 173

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           +D+GE                E +RY+EIWN+VF QF+      +++   LP  +IDTGM
Sbjct: 174 YDRGEKYDPDHIGERLFFEEMENDRYVEIWNIVFSQFDCDPTIDRKDYKELPHKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+ +++QE   N+D DLF  +I A+E++  +KY   + + +RVI DH+R+ +F ++D
Sbjct: 234 GLERITSIIQEGETNFDTDLFLPIIHATEELADVKY-AEDKMAYRVIADHIRTVTFALSD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G +    GRGYVLRRI+RRA+ Y + +G  +P +  L+  +   M   Y  L +    ++
Sbjct: 293 GAMFDRAGRGYVLRRILRRAVRYGKNIGIDKPFLYTLVDVVVDNMKEFYDYLPEKAEFVK 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           E ++ E+  F KTL +G   +  V++H   D++++G  AF LYDT+G PL++  +I    
Sbjct: 353 EAVKKEEVAFHKTLSQGEKKIKDVIAH-SDDKMIDGSTAFMLYDTYGFPLELTIEIAEES 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   +D   F   ++ Q+ RARA      S  ++KI   L +    + F+ YD       
Sbjct: 412 GFT-VDSEGFQVEMKAQQDRARAARGERESMASQKI--DLMDFTTPSTFV-YD------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T    + V  + + GE V+E     + E++ + T FYAE GGQ 
Sbjct: 461 ----------------TAPCKTTVIGLFKDGEKVDELT--DEGEIIVETTNFYAEMGGQC 502

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG A  D    ++T+V K   G  +H+  +  G +    ++ LT+D   R  +  NH+
Sbjct: 503 ADTGSAHSDQFDAEVTNVLKAPNGQHLHYIKLTSGSVHVGDTVELTVDTARRTLIENNHT 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LGSHV Q GS +  + LRFD TH   +T  EL ++ED VN+ I + + 
Sbjct: 563 ATHLLDAALKNVLGSHVGQAGSYLDENRLRFDFTHPSKMTKEELTAVEDMVNEYIFKGVD 622

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M +E+AI++GA AL   KY D V          G  S  LCGGTHVS+T +I L 
Sbjct: 623 VDVKEMPKEEAISAGATALFDEKYGDVV-----RVVRVGDFSVELCGGTHVSNTAKIGLF 677

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            I  E+S+ +G+RRIEA+T  RA   L   +E L+ + + LK +    +V + E      
Sbjct: 678 KIEMETSVGSGVRRIEAVTNVRAYKALRKSEETLEEVGTVLKANDLNKIVEKAESTMTTL 737

Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             ++        +LN  +         ++  V F+   + + D+   K +    + +++S
Sbjct: 738 NAMKKEIETLTSKLNALEAKNQASQVEEVNGVKFLYTHVEK-DNAAAKQMAFDFRDQLES 796

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           GI+++     E K S  + +T+DL + + A  L +   +VL  G GGG+P  AQ G P  
Sbjct: 797 GIVVVTSTF-EGKNSYFVGITKDLTNTYKAGVLVKAMNEVL-DGRGGGKPDFAQGGAPTL 854

Query: 883 NKADQAIAGVASFL 896
           +K D+AI  V S L
Sbjct: 855 DKIDEAITAVKSKL 868


>gi|225859149|ref|YP_002740659.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225720312|gb|ACO16166.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 70585]
          Length = 872

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T+ +SS + AIV     V     G    ++F +T FYAE G
Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L      +L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYILAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|237651172|ref|ZP_04525424.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
          Length = 872

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 493/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYQELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I   E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIICEVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T+ +SS + AIV     V     G    ++F +T FYAE G
Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGRRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|331701288|ref|YP_004398247.1| alanyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
 gi|329128631|gb|AEB73184.1| alanyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
          Length = 880

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/918 (34%), Positives = 497/918 (54%), Gaps = 63/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   +   IR  +L+FFQ+ GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSGQIRQMYLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  A++LLT  K
Sbjct: 61  PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAITWAYELLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D  +LY+TVY +D++A   W+K  G++ D II I   DNFW + + GP GP SEIF
Sbjct: 117 WFGWDPDKLYMTVYPKDKDAKMYWEK-VGVAPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 172

Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+      P   E        R++E+WN+VF QF    +     LP+ +IDTGMGLE
Sbjct: 173 YDRGKDFDNLAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIAD 288
           R+ ++ Q    N++ DLF  +I+ +E+++  K    N       R+I DH R+ +  I D
Sbjct: 233 RVVSIFQHARTNFETDLFLPMIRKTEELSDNKKYDTNKKDNEAFRIIADHARAITVAIGD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYV+RR++RRA+   + LG  E  +  L+P +   + S YP++++ K  I 
Sbjct: 293 GALPSNVGRGYVIRRLIRRAIVNGQRLGINEAFLYKLVPVVGQTLESYYPDVLKQKDYIA 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +RSE++RF +TL  GL L + V+  +       ++G  AFKLYDT+G P+++ ++   
Sbjct: 353 KVVRSEEDRFNETLTDGLKLFNQVVKDAKANHQTTIDGPTAFKLYDTYGFPVELTEEEAN 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL+ +D   F   +++Q+ RAR    G  S   ++    L E    ++++GYD L   
Sbjct: 413 DAGLS-VDKPGFEVEMQKQKDRARKARSGAKSMGVQRDL--LIEIKDPSEYVGYDTLDVD 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV+  ++V+    G  VEV+FD+TPFYAE GG
Sbjct: 470 H----------------------AELLEIVENEKLVDH-SKGGSVEVIFDKTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   ++      + A      H +  +  L    +  L +D     ++  
Sbjct: 507 QVADRGVVLDEEGDKVADVVDVQHAPNGQNLHTLKTQEPLEKGKTYHLIVDKLFHSRVEK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  +L  +LG H  Q GS + P+ LRFD  H   +T  +L+ +ED VN  I  
Sbjct: 567 NHTATHLLDQSLRNVLGGHTQQAGSLVEPNYLRFDFNHFGQVTDEDLQKVEDMVNRQIFN 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T + + +     GA AL   KY D+VRVVS+     G  S   CGGTHV++T +I
Sbjct: 627 EIDVNTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVNNTRDI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            L  IVSES + AG+RRIEA+T + A   L   +++LK +A  LKV    +   RV+++ 
Sbjct: 682 GLFKIVSESGVGAGVRRIEAVTAKDAFKLLNDHEKELKQIAGDLKVTQIKDTPKRVDQLL 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            E + L       + +L  +               + ++ II +    +L+ + D  + K
Sbjct: 742 GEIKDLTQKQQSLEAKLAGQQAQNVFADKKTAGKYSIITGIIKDAGMDQLRQLADTWRSK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L   S + KA++++ V ++ +     A DL +  A  + GGG GGRP+MAQ+G
Sbjct: 802 HLSDVLVLGTGSGD-KANLIVAVADEQIKAGIKAGDLIKSIAGNIKGGG-GGRPNMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G +    D+A++    +L
Sbjct: 860 GKDPAGLDKAMSAAVDWL 877


>gi|195977801|ref|YP_002123045.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974506|gb|ACG62032.1| alanyl-tRNA synthetase AlaS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 872

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/918 (35%), Positives = 498/918 (54%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I +   +NFW +   GP GP +EIF
Sbjct: 117 WFDFPKEKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAYDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIKEVEKLSGHTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L     + L+G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIIKREEETFARTIDAGSGHLDQLLAQLKAKGQDRLDGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA ++  GS   +    +L      ++F+ Y+    
Sbjct: 413 EDAGYK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQN--ETLAGITEPSEFL-YE---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  V+S +  I+   E  E    GQ   +VFDQTPFYAE G
Sbjct: 465 -------------------TETVASRLSVIIVDNERSEMVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D    +      +KA      H +     L       L ID++ R  + 
Sbjct: 505 GQVADHGVIKNDKGDPVARVIDVQKAPNGQPLHTVEVLASLALNTVYTLAIDHKRRYAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G H +Q GS      LRFD TH + +T+ EL+ IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHKIIGEHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L + T   + E A A GA AL G KY   VRVV +     G +S  LCGGTH+S++ E
Sbjct: 625 KALAITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  I+ E  I +G RRI A+TGQ+A      Q++ LK +A  LKV Q   +  +V  +
Sbjct: 680 IGLFKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDTLKEIAHTLKVPQIEQLPSKVVSL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R LQ   A+ K +              +  D+ +++  +S  D+  L++  D  ++
Sbjct: 740 SEQIRDLQKEIAELKEKAAAAQAGDVFKKVQEANDLRYIASEVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++L     E K +VL+  ++D   R +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLAASIGE-KVNVLVA-SKD--KRAHAGNLIKALAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A V   L
Sbjct: 855 GSDASKLSELLAAVPEHL 872


>gi|256545145|ref|ZP_05472511.1| alanine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256399186|gb|EEU12797.1| alanine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 870

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/905 (35%), Positives = 501/905 (55%), Gaps = 54/905 (5%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + +R  +L FF  K  H +L S SLIP +D +L+  N+GM P K  FTG++K      T+
Sbjct: 7   NELRKEYLNFFGSKKNHTVLKSFSLIPEDDESLLLINAGMAPLKKYFTGEKKMKNNRATS 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R G    D++ VG T RH TFFEMLGNFSFG YFK  AI  A++ LT   ++D+ 
Sbjct: 67  SQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAYEFLTVNLEIDKN 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            L+++VY+ D+EAF +W    G++ D+I+R    DNFW + E GPCGP SEIF D+G   
Sbjct: 123 LLWVSVYENDDEAFDIWHDEIGIAKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGIEK 181

Query: 184 ---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                     +++ +R++E+WNLVF QF +   +E   L   +IDTGMGLERMA VLQ K
Sbjct: 182 AVDENDNKPGNDDSDRFMEVWNLVFTQFNKNANKEYIPLAHPNIDTGMGLERMAMVLQNK 241

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N +++D+ +++I+  E+++  KY     + ++ RVI DH ++ +F+++DGI P+NE RG
Sbjct: 242 DNIFEVDVNQNIIKEIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEKRG 301

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + +LLG     +  ++  +       Y EL   +  I   +  E+E F
Sbjct: 302 YVLRRLIRRAFRHGKLLGIEGEFLSSIVDCVIDSYKVEYDELTNNREKIINIIEKEEENF 361

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            KT+D GL +L+  +  L     +IL G  AFKLYDT+G PLD+ ++IL    L  +D  
Sbjct: 362 QKTIDSGLDILNSYIKELKENNKDILKGKDAFKLYDTYGFPLDLTKEILDENDLK-VDTK 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ +E QR+ AR         + E I     +++  T F+GY+               
Sbjct: 421 EFDEYMENQRNLARNARKSDAGWSLESIN---VDEFKQTDFVGYENFE------------ 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      ++S +  +    E V     G K  +V D+T FYAE GGQ+ DTG  I 
Sbjct: 466 -----------INSNIIGLFDSKEKVNFIKKGHKGIIVSDKTSFYAEGGGQVADTGFIIT 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           D  + ++ +VQKK + + +H+  VE G      + +  ++ Q R  ++ NH+ATHLL  A
Sbjct: 515 DDAKARVYNVQKK-KDVILHYVEVEEG-KLESCNALFKVNKQRRLDITRNHTATHLLDQA 572

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +L   V Q GS +    LRFD T+   +T  E+K IED VN+ I + LPV   IM+ 
Sbjct: 573 LRNLLSDEVKQAGSLVDEYKLRFDFTYPNALTKDEIKKIEDEVNEKIREQLPVKKEIMSY 632

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +++   GA  L   KY D VRVVSV       +S  LCGG HV+++ EI++  I+ ESS 
Sbjct: 633 KESEKLGAIGLFEDKYKDMVRVVSV-----SDYSKELCGGCHVNNSSEILMFKIIQESSA 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +GIRRIEAITG++   +L    E + S++  LK +  N++ R + + EE ++L+    K
Sbjct: 688 ASGIRRIEAITGKKVYEYLNNNIELINSISDELKTNPKNILSRAKSLNEEIKQLKDDIQK 747

Query: 777 RKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K     +     +     I  +N + H     D   L++  + ++ K +  II+   + 
Sbjct: 748 LKEFNEKDIYKDMESEVKDINGINLLVHKFDNEDLDTLRNFENRIKDKYKDLIIVFATV- 806

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           K+ K      V++ L D++NA  + +  +K+ GG G GG+ + AQ+GG + +K D+A+  
Sbjct: 807 KDNKIIFTASVSDSLTDKYNAGKIVKEVSKITGGNG-GGKKNFAQAGGKDISKLDEALEK 865

Query: 892 VASFL 896
           V   +
Sbjct: 866 VYDLI 870


>gi|319952367|ref|YP_004163634.1| alanyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
 gi|319421027|gb|ADV48136.1| alanyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
          Length = 871

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/919 (36%), Positives = 484/919 (52%), Gaps = 73/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR+ FLEFF+   H+++ S+ ++  +DPTLMFTN+GM  FK  F G   P    V
Sbjct: 1   MKSQEIRSKFLEFFKDKEHKIVASAPMVIKDDPTLMFTNAGMNQFKEFFLGNTVPKDTRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFKE AI  AW+ LT    +D
Sbjct: 61  TDTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAITWAWEFLTDVCKID 120

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  LY+TV++          D EA  LWK I  +   +I+     DNFW M + GPCGPC
Sbjct: 121 KTSLYVTVFEGSKDADNLDQDSEALALWKNI--VPESQILFGNKKDNFWEMGDQGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    + +  + +EIWNLVFMQ+ ++   +   LP   +DTGM
Sbjct: 179 SEIHVDIRSAEEKAKVSGASLVNNDHPQVVEIWNLVFMQYNRRANGQLESLPAKHVDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+  V+Q   +NYD D+F  +I+  E +T   Y  +    +  RVI DH+R+ SF I
Sbjct: 239 GFERLCMVMQGVQSNYDTDVFTPIIREIEAITKSTYGKDEKIDIAIRVIADHIRAVSFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG LP+N G GYV+RRI+RRA+ Y    L   EP M  L+  LC  MG+A+PEL   K 
Sbjct: 299 SDGQLPSNTGAGYVIRRILRRAIRYGFTFLDTKEPFMYRLVNVLCDSMGAAFPELKNQKQ 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LIE  ++ E+  F KTLD+GLVLLD ++S+    +I++G  AF+LYDT G P+D+   IL
Sbjct: 359 LIENVIKEEEHSFLKTLDQGLVLLDSIISNAD-TKIIDGRKAFELYDTFGFPIDLTALIL 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RGL  +D   F+ A++EQ+ R+R+ S         K  +++       +FIGY+ L  
Sbjct: 418 SERGL-NLDEKGFDVAMQEQKKRSRSASE------ISKEDWTVLSSDLEQEFIGYEFLES 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  + + RK                           V     G++ + VF+ TPFYAE G
Sbjct: 471 NVKLVKYRK---------------------------VTSKKDGEQYQFVFNLTPFYAEGG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G        +      KK     +H A  +        +    +D + RR+   
Sbjct: 504 GQVGDKGYLEAANGDVIYILDTKKENNETIHFA--KNLPKEVRETFKAVVDQKQRRRTEA 561

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  ILG+HV Q GS +    LRFD +H   +T+ EL  +E  VN  I  
Sbjct: 562 NHTATHLLHQALREILGAHVEQKGSAVHSKYLRFDFSHFSKMTADELAEVERFVNARIEG 621

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           NLP+   R +  + AI  GA AL G KY D VR +          S  LCGGTHV +TG+
Sbjct: 622 NLPLEEGRNIPMQTAIEQGAMALFGEKYGDAVRTIRFG------KSIELCGGTHVKNTGD 675

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SE ++ +GIRRIEAIT    +      +  L  +   L  +  + V  +  + 
Sbjct: 676 IWHFKIKSEGAVASGIRRIEAITSDAVKDFYSENNNVLSEVKHLLN-NSKDPVKALSSLQ 734

Query: 765 EEYRKLQLI---HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE  KL+       + K +    DL      I  ++F++  + ++D+  +K +   +  +
Sbjct: 735 EENAKLKKEVEGLLRDKAKNLKGDLLNEIQSINGIDFLAKKV-DLDAGGIKDLSFEM-GQ 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +  + +L+    E KA +   ++++L+     +AV + R   K++ GGG GG+P  A +
Sbjct: 793 NKDNLFLLLAAENEGKALLSCYISKELVANKELSAVTVVRELGKLIQGGG-GGQPFFATA 851

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N     +A+    ++L
Sbjct: 852 GGKNPEGIAEALEQAKNYL 870


>gi|302866800|ref|YP_003835437.1| alanyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302569659|gb|ADL45861.1| alanyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 893

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/911 (36%), Positives = 495/911 (54%), Gaps = 72/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  FL  F+ NGH ++PS+ L   +DP L+F N+GMV F   F GQ+ P Y   
Sbjct: 1   MKTAEIKRRFLAHFEANGHTVVPSAPLPAISDPNLLFINAGMVQFVPYFLGQQTPPYARA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK  AI LAWDL TK     
Sbjct: 61  TSVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKSGAIPLAWDLATKPVEAG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY +D+EA+ +W+  +G+ A++I+R    DNFWSM   GPCGPCSE++
Sbjct: 117 GFGLDPERIWATVYLDDDEAYDIWRA-TGVPAERIVRRGKADNFWSMGIPGPCGPCSELY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G   + +RY+E WNLVFMQFE+     +   P        +IDTGMGL
Sbjct: 176 YDRGPAY-GREGGPEVDEDRYLEFWNLVFMQFERGPGVGKEDFPILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  K ++  + ++TG +Y             + V  RVI DH+R
Sbjct: 235 ERMASLLQGVDNLYEIDEVKPILDRAAELTGKRYGVHSGHAANESHPDDVRLRVIADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           +S  LI DG+ P+NEGRGYVLRRIMRRA+   RLLGY +  +  LLP     M  +YPEL
Sbjct: 295 TSLMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGYQDRALPELLPVARDCMAPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPL 398
            +    I +   +E++ F  TL  G  +LD  ++         L+GD AF+L+DT+G P+
Sbjct: 355 AEDFGRISQYAYAEEDAFLATLRAGTTILDTAIAETKSAGKAALSGDKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +GL  +D   F + + +QRSRA+A +    +G T+   + S+ +  G  +F
Sbjct: 415 DLTLEIAAEQGL-QVDAEGFRRLMADQRSRAKADAQARKTGHTDVSAYRSVLDGGGPVEF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY  L                          S V+A++  G  V  AV G  +E+V D 
Sbjct: 474 TGYTEL-----------------------SRESRVRALLSGGAAVSAAVEGDTIELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R+  +    ID 
Sbjct: 511 TPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRAKVVRGEVRSGETGYAEIDV 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + L  +E 
Sbjct: 571 SRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLHDVEQ 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+++  +L V   + ++E+A   GA AL G KY +RVRVV V     G ++  LCGGT
Sbjct: 631 QVNEVLLADLEVHAFVTSQEEARRIGAMALFGEKYGERVRVVEV-----GDYARELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+ + ++ L+ I+SE+S+ +G+RRIEA+ G  A   L  +   +  LA   +V    V 
Sbjct: 686 HVARSAQLGLVKILSEASVGSGVRRIEALVGMDAFGFLAREHLLVSRLAELFRVPGEQVA 745

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHI----ISEVDSKELKS 811
            RVE+   + R  +    K + Q  L        +  DV  ++++         + ++++
Sbjct: 746 DRVEQTVTQLRDAEKELEKLRAQLVLGGAGALAAQAKDVRGVAYVGTEAPEGAAANDVRT 805

Query: 812 VMDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +   ++ +I +    ++ V      KAS+++ V +    R  +A DL + +      G G
Sbjct: 806 LAQEIRGRIDAARPAVIAVAARANGKASLVVAVNQAARGRNLSAKDLVKAAFS----GRG 861

Query: 869 GGRPHMAQSGG 879
           GG   +AQ GG
Sbjct: 862 GGSDDLAQGGG 872


>gi|91217166|ref|ZP_01254128.1| alanyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91184766|gb|EAS71147.1| alanyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 872

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/930 (33%), Positives = 466/930 (50%), Gaps = 93/930 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  FLEFF+   H ++ S+ ++  +DPTLMF N+GM  FK  F G   P    
Sbjct: 1   MKSTL-LRRQFLEFFKSKSHTIVNSAPIVLKDDPTLMFINAGMNQFKPYFLGNSIPKETR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFK+ AI  AW+ LT   ++
Sbjct: 60  VTDSQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKKEAIDWAWEFLTDVLEI 119

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  LY+T+++ D+        EA+ LWK +  +  DKI+     DNFW M + GPCGP 
Sbjct: 120 SKDNLYVTIFEGDKVDGLQKDSEAYDLWKTL--VKEDKILLGDKKDNFWEMGDQGPCGPA 177

Query: 173 SEIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D      +    G    + +  + +EIWNLVF+Q+ ++       LP   IDTGM
Sbjct: 178 SEIHVDLRSKEEKAKIPGKDLVNRDHPQVVEIWNLVFIQYNRKADGSLESLPAKHIDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLI 286
           G ER+  V+Q KT+NYD D+F  LI+  E +TG  Y          RVI DH+R+ +F I
Sbjct: 238 GFERLCMVVQGKTSNYDTDVFTPLIREIETITGTTYGKTEDTDIAIRVISDHIRAVTFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L    P +  L+  L  +MG A+PELI  K 
Sbjct: 298 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLNIQTPFIYKLVEVLSKQMGDAFPELISQKN 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           L E  +  E++ F KTL++GL LLD +++     +I++G  AF+LYDT G P+D+   IL
Sbjct: 358 LCENVIHEEEKSFLKTLEQGLGLLDSIVNE-SSSKIISGQKAFELYDTFGFPIDLTTLIL 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G   +D   F   L++Q+ R++A         T    + + +     +FIGYD    
Sbjct: 417 SEKGY-ALDQKGFEVQLQKQKQRSKAA------AQTSSSDWVVLKTDDQGEFIGYDDTEA 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              + + RK                           V     G+  ++VF+ TPFY E G
Sbjct: 470 DVSITKYRK---------------------------VTSKKEGELYQLVFNLTPFYPEGG 502

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G               KK     +H    +      +      +D   R++ + 
Sbjct: 503 GQVGDKGYLETPNGDTVFVIDTKKENNQIIHI--TKSLPKDLQKDFKAVVDLSQRQRTAS 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL +ILG+HV Q GS +    LRFD +H   +T  EL++IED VN  I +
Sbjct: 561 NHTATHLLHQALRSILGTHVEQKGSMVHSGYLRFDFSHYSKLTQEELQAIEDFVNARIKE 620

Query: 646 NLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           NL     R +  + AI  GA AL G KY D VR V          S  LCGGTHV +T +
Sbjct: 621 NLTFEEERTIPYDVAIDKGAIALFGEKYGDTVRFVKFGN------SKELCGGTHVENTSK 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    I +E+S+ +GIRRIEAIT   A+  L  + + L  + S L     +V+  VE + 
Sbjct: 675 LWHFIINNEASVASGIRRIEAITSDAAKEFLTKESDVLSQVKSILN-KPQDVLKSVESLQ 733

Query: 765 EEYRKLQLIHAK---RKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE   L+    +    KL+    ++      I  + F++H +  +D+  +K +   L  +
Sbjct: 734 EENTTLKKEIEQLNVLKLKQVKTEVQSQLKDINGIQFLAHQV-NLDANAMKDLAFQLGGE 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL----------GGGG 867
                ++L    +  KA +   +++ L+    +NA  + +   K +              
Sbjct: 793 HTDLFVVLAS-KQNGKALLACYISKALVESKSWNAGKIIKSLGKHIQGGGGGQAFFA--- 848

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                    +GG N     QA+A   + ++
Sbjct: 849 --------TAGGRNPEGIPQALAEAKTIVE 870


>gi|148993058|ref|ZP_01822652.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|168489547|ref|ZP_02713746.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|147928259|gb|EDK79276.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|183571933|gb|EDT92461.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|332073690|gb|EGI84169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
          Length = 872

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+ +  +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDSSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T+ +SS + AIV     V     G    ++F +T FYAE G
Sbjct: 462 ----------------NYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|319947341|ref|ZP_08021574.1| alanine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319746583|gb|EFV98843.1| alanine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 872

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/918 (35%), Positives = 488/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y  D +++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPADTDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G    + +++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAETIVADLKEKGQTVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + + S + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +     +  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDATGNVVATVTDVQKAPNGQALHTVEVHAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              +     +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAVAGDVFKHVQEANGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|149019336|ref|ZP_01834698.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|225854830|ref|YP_002736342.1| alanyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|147931206|gb|EDK82185.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|225722331|gb|ACO18184.1| alanyl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 872

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 495/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PCITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +T FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|284097293|ref|ZP_06385431.1| alanyl-tRNA synthetase [Candidatus Poribacteria sp. WGA-A3]
 gi|283831199|gb|EFC35171.1| alanyl-tRNA synthetase [Candidatus Poribacteria sp. WGA-A3]
          Length = 734

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/761 (44%), Positives = 458/761 (60%), Gaps = 35/761 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   +R +FL+FF    H ++PS+SL+P  DPTL+FTN+GM  FK +F G+E+  Y    
Sbjct: 4   NAHELRQSFLDFFHAADHAVVPSASLLPQADPTLLFTNAGMNQFKRVFLGEEQRSYSRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ A+   WD LTK   L  
Sbjct: 64  SVQRCMRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKKDAVHYGWDYLTKTLGLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L++TV+ +D+EAF+LW+   G+ A +I+R+   DNFW M ETGPCGPCSEI  DQG  
Sbjct: 124 DQLWVTVFQDDDEAFELWENSVGVPAARIVRLGYKDNFWQMGETGPCGPCSEIHIDQGAA 183

Query: 183 IPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  G        + +RY+EIWNLVFMQF++  +     LPK SIDTGMGLER+A V+Q  
Sbjct: 184 LGCGRASCAVGCDCDRYLEIWNLVFMQFDRDAEGNLHPLPKPSIDTGMGLERLAAVVQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +NY  DLF  L+ A    TG  Y  +     + RVI DHLR+ +F+I DGILP+NEGRG
Sbjct: 244 DSNYATDLFMPLLSAIAVRTGCGYGKDEASDRSMRVIADHLRAITFMIVDGILPSNEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA  + RLLG TEP +  L   + TEM  AYPEL QA     + +  E+ERF
Sbjct: 304 YVLRRILRRASRHGRLLGVTEPFLYELTGTVATEMEGAYPELAQAGDTCRKVVEGEEERF 363

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TLD+GL +L+ +++       L+G+  FKLYDT+G PLD++++    +GL   D+  F
Sbjct: 364 IGTLDQGLPILNRMVAEAEAGS-LDGESVFKLYDTYGFPLDLIEEAAREQGL-VADLEGF 421

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +ALE QR RAR  ++ +     +     L ++   T+F+GY  L+              
Sbjct: 422 QRALEAQRDRARKSAVFVAEQ-EKPFITELTQRLRPTEFLGYQALQS------------- 467

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S+V+A+++   + +E V G  VE+V D TPFY E GGQ+GD G   G  
Sbjct: 468 ----------ESVVQAMLKGDALADEVVEGDDVELVLDATPFYPEGGGQVGDQGTLTGRE 517

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R+QI +  K +  + +H   V  G +RT   L  T+D   R   + NH+ATHLLH AL 
Sbjct: 518 GRIQIRETTKVSGKLLLHKGTVVAGRVRTGEPLAATVDSVTRHGAARNHTATHLLHAALR 577

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG  V Q GS + P+ LRFD ++ KP+ + +L+ IE  VN  +  N  V T +M  ++
Sbjct: 578 EVLGPQVKQYGSLVAPNRLRFDFSYFKPLRTRDLEEIEAMVNFHVLGNTFVRTDVMGIQE 637

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA A  G KY +RVRVV V     G  S  LCGGTH   TGEI    I SE  I +
Sbjct: 638 AIHAGALAFFGDKYGERVRVVGV-----GEFSKELCGGTHCQHTGEIGSFRITSEGGIAS 692

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           G+RRIEA+TG  A  H    +  ++ LA  LK S   VV +
Sbjct: 693 GVRRIEALTGTGALDHGKKLESDVRELAELLKSSPSEVVPK 733


>gi|288924681|ref|ZP_06418618.1| tRNA ligase [Prevotella buccae D17]
 gi|315607688|ref|ZP_07882682.1| alanine--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|288338468|gb|EFC76817.1| tRNA ligase [Prevotella buccae D17]
 gi|315250624|gb|EFU30619.1| alanine--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 881

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/928 (35%), Positives = 495/928 (53%), Gaps = 83/928 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-VYQ 59
           M   + +R ++ +FF+  GH+++ S+ ++  +DPTLMFTN+GM  +K+I  G + P    
Sbjct: 1   MMTANEVRESYKKFFETKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     
Sbjct: 61  RRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLH 120

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L+   LY+TV++         D+EA + W K   + AD II    +DNFW M +TGPCGP
Sbjct: 121 LNPEDLYVTVFEGSPEENLSRDDEAARFWGK--HVPADHIINGNKHDNFWEMGDTGPCGP 178

Query: 172 CSEIFFD-QGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D +         G    +++  + IEIWN+VFMQ+ ++       LP   IDTG
Sbjct: 179 CSEIHVDSRTPEEKAQVPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MG ER+  +LQ K +NYD D+F+ +I+  E++TG+KYE  +          V  RV+ DH
Sbjct: 239 MGFERLVRMLQGKHSNYDTDIFQPIIKEIERLTGLKYEDAHGDSRTQTNIDVAMRVVADH 298

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
           LR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  M  L+P L  EMG+AY
Sbjct: 299 LRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNRKEAFMYKLVPVLVQEMGAAY 358

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHG 395
           PEL   + LI   ++ E++ F +TLD+G+ LL+G +  L       L+G  AF+L+DT+G
Sbjct: 359 PELPAQQELIARVMKEEEDSFLRTLDKGINLLNGDMDELKAHGKTELDGAAAFRLFDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ + I    G   +D   F++ +E+Q++RAR  ++          W  +KE  G  
Sbjct: 419 FPLDLTELICRENGYT-VDGKGFDEEMEKQKARARNAAV-----VENGDWEVVKE--GEQ 470

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +F+GYD       +   RKV  +K                                E+V 
Sbjct: 471 EFVGYDYTEYECHILRYRKVTQKKNTF----------------------------FELVL 502

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D TPFY E GGQ+GDTG  +     +++ D +++          V++         +  +
Sbjct: 503 DHTPFYGEMGGQVGDTGVLVSADETVEVIDTKRENNQSIHI---VKQLPKDIRADFMACV 559

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R   + NH+ATHLL +AL  +LG HV Q GS ++ D LRFD +H + +T  EL+ +
Sbjct: 560 DIDKRDGSAANHTATHLLDYALKQVLGDHVEQKGSYVSADTLRFDFSHFQKVTDEELRQV 619

Query: 636 EDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E  VND+I Q+ P+   R    E+A A GA AL G KY D+VRVV          S   C
Sbjct: 620 ERIVNDMIRQDFPLDEHRDTPLEEAKALGAIALFGEKYGDKVRVVRFGP------SCEFC 673

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GG H  STG I    I+ ESS+ AGIRRIEA+TG+     +    + L  + +    +  
Sbjct: 674 GGIHAKSTGRIGFFKIIGESSVAAGIRRIEALTGKACEEAIYALQDTLTDVRALFN-NAK 732

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF-----MSHIISEVDSKEL 809
           ++ G V +  EE+  ++    K + Q  VE L    +  V       +   + E++    
Sbjct: 733 DLKGVVGKYIEEHDAMKKDIEKFRAQ-TVERLKDELVKRVKLMNGVQVVRAVIEMEPSAA 791

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGG 867
           K ++  +++ +   ++ ++G    +K  + +++++D++     NA  + R +AK++ GG 
Sbjct: 792 KDLVFKIREALPENLLCVIGSKAHEKPMLSVMLSDDMVKGHSLNAGQMIREAAKLIQGG- 850

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASF 895
           GGG+PH AQ+GG N +  + A+  V   
Sbjct: 851 GGGQPHYAQAGGKNIDGLNAAVDKVIEL 878


>gi|288803286|ref|ZP_06408720.1| tRNA ligase [Prevotella melaninogenica D18]
 gi|288334327|gb|EFC72768.1| tRNA ligase [Prevotella melaninogenica D18]
          Length = 887

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/935 (34%), Positives = 490/935 (52%), Gaps = 90/935 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  +  
Sbjct: 1   MTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L     
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGNYFKEGAIDYAYEYLVDVLH 120

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           LD + LY+TV++         D+EA   W+K      + I+    +DNFW M +TGPCGP
Sbjct: 121 LDPKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCGP 178

Query: 172 CSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D           G    +++  + IEIWN+VFMQF ++       L    IDTG
Sbjct: 179 CSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLDPLKMHVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNH 272
           MG ER+  ++Q+K +NYD D+F  +I   E+++G KY                    +  
Sbjct: 239 MGFERLVRLMQDKNSNYDTDIFAPVIAEIEKISGKKYNHTFPEGDNGEGINEEQKVDIAM 298

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331
           RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L  
Sbjct: 299 RVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLVR 358

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFK 389
           EMG+AYPEL   + LI   ++ E++ F +TL++G++LL+G +  L       L+G  AF+
Sbjct: 359 EMGTAYPELTAQRELIGRVMKEEEDSFLRTLEKGIMLLNGAMDELKAHGQTQLDGKEAFR 418

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           L+DT+G PLD+ + I    G   +D   FN+ +E+Q++RAR       +      W  L+
Sbjct: 419 LFDTYGFPLDLTELICAENGYT-VDEKQFNEEMEQQKARARNA-----AAVENGDWEVLR 472

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           E  G  +F+GYD       +   RKV  +K                              
Sbjct: 473 E--GEQEFVGYDYTEYECHILRYRKVTQKKNSF--------------------------- 503

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             E+V D TPFY E GGQ+GD G  + +   + I D +++          V+      E 
Sbjct: 504 -YELVLDYTPFYGEMGGQVGDQGVLVSEDETISIIDTKRENNQSVHI---VKELPKNLEA 559

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT 
Sbjct: 560 DFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKITD 619

Query: 630 AELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            EL+ +E  VN++I ++ P+   R    E+A   GA AL G KY D+VRVV         
Sbjct: 620 EELRQVEKLVNEMIRKDYPMDEHRDTPMEEAKKMGAVALFGEKYGDKVRVVRFGP----- 674

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L S 
Sbjct: 675 -SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLRSM 733

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISE 803
              +  ++   + +  EE   ++      + Q               +  V+ +  ++  
Sbjct: 734 FN-NAKDLKAVLTKFVEENDSIKKELESFRTQAVSRAAKNMVEHAETVNGVHVVKTVLP- 791

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAK 861
           +D    K ++  +++ +   ++ ++G   E +  + I++++D++     NA  + R +AK
Sbjct: 792 IDPASAKDIVFKVREALPEKLVCVLGSVYENRPLLSIMLSDDMVKDYNLNAGKIIREAAK 851

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++ GG GGG+PH AQ+GG N +    A+  V   +
Sbjct: 852 LIQGG-GGGQPHYAQAGGKNADGIRSAVDKVIELI 885


>gi|254430394|ref|ZP_05044097.1| alanyl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197624847|gb|EDY37406.1| alanyl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 907

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/925 (36%), Positives = 493/925 (53%), Gaps = 69/925 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR+ FL F+++ GH  +PS+SL+P +DPT++ T +GM+PFK +F GQ +      T
Sbjct: 18  SGADIRSAFLAFYEQRGHRRMPSASLVP-DDPTVLLTIAGMLPFKPVFLGQAERPAPRAT 76

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T+ F L  
Sbjct: 77  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTEVFGLSP 132

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L ++V+ ED EA  +W+++ G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 133 ANLVVSVFREDHEAEAIWREVVGVNPRRIIRMDEADNFWASGPTGPCGPCSEIYYDFRPE 192

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   SIDTGMGLERMA +LQ   N
Sbjct: 193 L-GDDGIDLEDDSRFIEFYNLVFMQYNRDAEGSLTPLANRSIDTGMGLERMAQILQGVPN 251

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI+ +  + G+ Y         + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 252 NYETDLIYPLIETAAALAGVDYRQLEQKGQTSLKVIGDHSRAITQLIGDGVSASNLGRGY 311

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG   P +  +  A   +M  AYP+L + + +I   L  E+ RF 
Sbjct: 312 ILRRLLRRVVRHGRLLGIDRPFLKTMGEAAIAQMRQAYPQLDERRTVILAELEREEGRFL 371

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+       ++GD AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 372 ETLERGEKLLADVLA--TGPRQISGDQAFELYDTYGFPLELTQEIAEEQGLT-VDLEGFE 428

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR RA+A ++ +     E I  ++     AT F GY+ L                
Sbjct: 429 AAMEAQRQRAKAAAVSIDLTLQEAID-AVAADLEATAFRGYEALEHP------------- 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--- 536
                     S V A+V  GE  E A +G  V++V D TPFY E GGQ+GD G  +G   
Sbjct: 475 ----------SCVLALVVNGEPAERAAAGDAVQIVLDSTPFYGEGGGQVGDRGVLLGGGD 524

Query: 537 ----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   +   +   +   +FVH   VERG L     +   +D   RR+   NH+ATHL
Sbjct: 525 QTAVDAGVIVSIEAVSRNRSVFVHSGRVERGALAVGDLVTARVDGACRRRAQANHTATHL 584

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++   + Q GS +  D LRFD    + +T  EL+ IE  +N  I++   +V  
Sbjct: 585 LQAALKQVVDPDIGQAGSLVDFDRLRFDFHCPRAVTPEELERIEALINAWISEGHALVVE 644

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  + A A+GA A+ G KY + V        D    S  LCGGTHV++T EI +  IV+
Sbjct: 645 EMAIDQARAAGAVAMFGEKYGEVV-----RVVDVPGVSMELCGGTHVANTAEIGVFKIVA 699

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AGIRRIEA+ G    S+L  +D  +K+L    K   G +V RV  + ++ +  Q 
Sbjct: 700 ESGVAAGIRRIEAVAGPAVLSYLQERDAVVKALGDRFKAQPGEIVERVTALQDDLKASQK 759

Query: 773 IHAKRKLQLNVEDLSC---------------HKIADVNFMSHIISEVDSKELKSVMDALQ 817
             A  + +L +   +                        +   +  V+   L++    L 
Sbjct: 760 ALASARQELALARSAALVTQAEAVGAAAAGDGGGEPFQLLVARLDGVEGAALQNAAQELV 819

Query: 818 KKIQSGIIMLVGISKE----KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRP 872
            ++ +   +++G   +     K  ++      L+     A       AK  GGGG GGRP
Sbjct: 820 DQLGATAAVVLGGLPDPTDLGKVVLVAAFGAALVAAGQKAGPFIGAVAKACGGGG-GGRP 878

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
           ++AQ+GG NG   D A+      L+
Sbjct: 879 NLAQAGGRNGAALDGALEQARQSLR 903


>gi|188589293|ref|YP_001920519.1| alanyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|251779892|ref|ZP_04822812.1| alanine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|205830029|sp|B2V3W2|SYA_CLOBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|188499574|gb|ACD52710.1| alanyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|243084207|gb|EES50097.1| alanine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 879

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/911 (34%), Positives = 506/911 (55%), Gaps = 50/911 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+FF+   H  L S SL+P ND +L+  N+GM P K  FTG ++P  
Sbjct: 1   MKFTKTNDLRDAYLKFFESKDHLKLESFSLVPQNDKSLLLINAGMAPLKPYFTGLQEPPK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + +TT QKCVR G    D+DNVG T+RH TFFEMLGNFSFG YFK+  I  AW+ LT   
Sbjct: 61  KRITTCQKCVRTG----DIDNVGITSRHGTFFEMLGNFSFGDYFKKEIIPWAWEFLTGVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L + +LY+T+Y +D+EA++ W  ++ +    I R+   DNFW     GPCGPC+EI F 
Sbjct: 117 ELPKEKLYVTIYLDDDEAYEYWTTLTDVDKTHIFRLGKEDNFWEHG-AGPCGPCTEIHFS 175

Query: 179 QGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           + + +P       E  + ++ IE+WNLVF QF+   K     L   +IDTGMGLER+A V
Sbjct: 176 RTDEVPTNSEKFVELSDEDKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q K + ++ID  +++++    +  +KY  +N   V+ R+I DH+RS +F+I+D I+P+N
Sbjct: 236 MQNKNSIFEIDTLENILKEVGNLANVKYGEDNKIDVSLRIITDHIRSITFMISDDIMPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + + LG  +  + +L   +  + GSAY +L   K  I++ ++ E
Sbjct: 296 EGRGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDCGSAYSDLEAKKDYIKKVIKIE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +++F +TLD G+ +L+ ++S L    +++L G   FKLYDT G P+++ ++IL       
Sbjct: 356 EDKFRETLDSGMEILNNLISELKENNEKVLKGADGFKLYDTFGFPMELTKEIL-EDEDLS 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F++ ++EQR RAR+         T+     +      T F GY+           
Sbjct: 415 LDEDGFHKEMKEQRERARSARKTSNYMGTDVKTLDVISGEIETTFDGYEN---------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        + + + VK +V   +     + G    VV D TPFYAE GGQ+GDTG
Sbjct: 465 -------------DSLIAEVKTLVNGEDFTNSIIEGNNAVVVTDVTPFYAEMGGQIGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D  + ++ D +K   G  +H      G L+    + L +D   R  +  NH+ATHL
Sbjct: 512 TIYNDNFKGKVLDTKKNIGGKIIHFVEAISGELKVGDKVKLEVDNARRENIKRNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LGSHV Q GS ++ D LRFD +H + +   EL  +E  VN+ I    PV T 
Sbjct: 572 LDAALVKVLGSHVHQAGSYVSADRLRFDFSHFEGVKEEELLKVEQLVNEAIMSVTPVNTT 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ ++A  SGA  +   KY ++VRVV       G +S  LCGGTH+ +TG+I L  I+S
Sbjct: 632 EMDLQEAKNSGAVGIFDDKYAEKVRVV-----CAGEYSKELCGGTHIDNTGKIGLFKIIS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG  A   +  + E LK ++  LK S+  +  ++++  +E ++ + 
Sbjct: 687 ENGIAAGTRRIEAVTGIEAYKWVNEKAELLKHISGKLKCSEKEITIKLDQQSKEIKEKEK 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +    ++     S   +  +N +++ +++VD + L+ + + ++ K+ + + +L
Sbjct: 747 EITNLKSKFASMEINDIINSVKDVKGINVVTYALTDVDGEALRGLCEKVRDKVNNSLTLL 806

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              S + K  +  +  ++ +    +   + + +A +LGGGG GGRP MAQ+GG    K  
Sbjct: 807 TS-SIDGKVVICAMADKEAVSKGAHCGKVIKEAATILGGGG-GGRPDMAQAGGKLPEKIS 864

Query: 887 QAIAGVASFLK 897
            A+  V   ++
Sbjct: 865 DALDSVYKIVE 875


>gi|291513841|emb|CBK63051.1| alanyl-tRNA synthetase [Alistipes shahii WAL 8301]
          Length = 873

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/928 (34%), Positives = 478/928 (51%), Gaps = 93/928 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++PS+ ++   DPTLMFTN+GM  FK+IF G     Y   
Sbjct: 1   MESNKIRQAFLDFFESKGHAIVPSAPMVVKGDPTLMFTNAGMNQFKDIFLGNAPRKYPRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+S+G YFK+ AI+ AW+LL   + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSYGDYFKKEAIEWAWELLHGVYGLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y TV++         D+EA+  W +   L AD IIR   +DNFW M ETGPCGPCS
Sbjct: 121 AERMYATVFEGSEEDGVPFDQEAYDYWLRY--LPADHIIRGNKHDNFWEMGETGPCGPCS 178

Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI FD  +        G    +    + IEIWNLVFMQF ++       LP  ++DTGMG
Sbjct: 179 EIHFDLRDEAEIAAKPGREMVNASHPQVIEIWNLVFMQFNRKANGSLEELPARNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+  +LQ K +NYD D+F+  I    +++G KY  +    V  RVI DHLR+ +F IA
Sbjct: 239 FERLCMILQGKKSNYDTDVFQPTIGRIAEMSGKKYGEDRKADVAMRVIADHLRAIAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG+TEP +  L+P L  +MG  +PEL   + L
Sbjct: 299 DGQLPSNVKAGYVIRRILRRAVRYGYTYLGFTEPTLCRLVPGLVGQMGGQFPELKAQQGL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +  E+  F +TL  G+ LLDGV+S       E+++G  AF+LYDT G P+D+ + I
Sbjct: 359 IEKVIEEEESSFLRTLATGINLLDGVISRTKGEGKELISGKDAFELYDTFGFPIDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              +G  G+D+ +F + L+ Q+ R+R           +   +        + F GYD L 
Sbjct: 419 AREQG-VGVDLAAFEKELQAQKERSRNA------AAVDTDDWVELFPIRESVFTGYDTLT 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R+V  +                                 ++VFD+TPFY  +
Sbjct: 472 EKVRIARYRRVTSKGKTS----------------------------YQLVFDRTPFYGNS 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G       R+ +   +K+   I      V +            +D + R+  +
Sbjct: 504 GGQVGDIGMIESANERIPVVATEKENGLIIHI---VNQLPENPAAEFTARVDPEKRQAAA 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHL+H AL  +LG+HV Q GS +TP+ LRFD +H + +T  EL+ +E  VN  I 
Sbjct: 561 NNHTATHLMHEALRKVLGAHVEQKGSLVTPEILRFDFSHFQKVTPEELRKVEQLVNRAIR 620

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            N P+V  R   +E+A   GA  L G KY D+VR+V          S  LCGGTH  +TG
Sbjct: 621 ANYPLVENREATKEEAEKCGAMMLFGEKYGDKVRMVRFGS------SVELCGGTHTGATG 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I    I+SES+I AG+RRIEA+TG++A   L   ++ ++++A +L      VV  V+++
Sbjct: 675 NIGFFKILSESAISAGVRRIEAVTGEQAEKVLYAAEDTMRNIAEYLNNP--QVVQAVKKM 732

Query: 764 WEEYRKLQLIHAKRKLQLNVE--DLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKK 819
            E    L       + +   +  D       + + M    ++ D     +K +   L+++
Sbjct: 733 LESNETLSKEVESMRREQVAQWADKIAASTPERHGMQLFATQTDRRPDFVKDLAYNLRQR 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM---- 874
               + ++  +  + K ++ +++ +++     NA  + R +AK+           M    
Sbjct: 793 SPRLVFVVGSVW-DGKPTLTVMLGDEITACGVNAGAVVREAAKL-----------MQGGG 840

Query: 875 ------AQSGGPNGNKADQAIAGVASFL 896
                 A +GG N +    AI      +
Sbjct: 841 GGQAFFATAGGKNPDGLQAAIDKAVELI 868


>gi|260942927|ref|XP_002615762.1| hypothetical protein CLUG_04644 [Clavispora lusitaniae ATCC 42720]
 gi|238851052|gb|EEQ40516.1| hypothetical protein CLUG_04644 [Clavispora lusitaniae ATCC 42720]
          Length = 964

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/966 (31%), Positives = 485/966 (50%), Gaps = 92/966 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           + S++R+TFL++F+   H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 19  SASTVRSTFLDYFKNKSHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPTSEFAT 78

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLT+ 
Sbjct: 79  LKRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTEV 138

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD+ RLY+T ++ DE        EA + W    G++ D I+    +DNFW M + GPC
Sbjct: 139 YKLDKDRLYVTYFEGDEKNGLEPDLEAKEYWLS-VGVAPDHILPGDAHDNFWEMGDQGPC 197

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +E+WN+VF+Q+ ++       LP   IDTGMG
Sbjct: 198 GPCSEIHYDRI-GGRNAASLVNQDDPNVLEVWNIVFIQYNREADSSLKPLPSKHIDTGMG 256

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F+ + +    +TG++                 +RVI DH+R
Sbjct: 257 FERLVSVLQDKSSNYDTDVFQPIFEEIRNITGVRPYTGKFGAEDVDGIDTAYRVIADHVR 316

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F I+DG +P NEGRGYVLRRI+RR   Y R             L+  +     S +P
Sbjct: 317 TLTFAISDGGVPNNEGRGYVLRRILRRGARYVRKYMNCPIGSFFQQLVDVVIENNSSIFP 376

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+ + K +++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G 
Sbjct: 377 EIAKNKDMLKEILMEEEVSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 436

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID  +F +A EE R  ++A +   G+   +    +L E      
Sbjct: 437 PVDLTRLMAEEAGLK-IDEEAFEKAKEESREASKATNTKGGATLIKLDVHALSE------ 489

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                          +             + + S + AI    + V+     GQ+  ++ 
Sbjct: 490 -----------LDNNESITKTNDVYKYGLDNIESKIVAIYDGSKFVDTISEAGQQFGIIL 538

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+TPFYAE GGQ  DTG  + DG         +      +H   +  G L+   +++ T 
Sbjct: 539 DRTPFYAEQGGQEYDTGSLVIDGSAEFAVTNVQSYGSYILHTGTMVEGTLKLNDNVIATY 598

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL  +LG  + Q GS + P+ LRFD +H + +T  EL+ +
Sbjct: 599 DELRRWPIRNNHTGTHVLNFALKEVLGDGIDQKGSLVAPEKLRFDFSHKQALTPKELEQV 658

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  ++II  N  V    +    A   +G  A+ G  Y D VRVVS+             
Sbjct: 659 ENISSEIIKSNKQVYAEEVELTKAKQIAGVRAVFGETYPDPVRVVSIGVAVADLLKDPTN 718

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736
           +D    S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A+           
Sbjct: 719 QDWTKLSIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTGHEAQEVQRIAREFSA 778

Query: 737 ------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIH 774
                        ++++ K L   LK    +V+ +           + I +  +  Q   
Sbjct: 779 SLDSADKLSFGPEKEQRAKELGVALKQLSISVLDKQKLNEKFTKLDKSIKDHLKAKQKEE 838

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           +K+ L+     L   + +   F    +    ++K +   ++ ++K+ +   + L+  + E
Sbjct: 839 SKKTLEAVNGWLKDEEKSKTAFFVAHVPISANAKAITEAINLIKKQHKDKSLYLLTGTSE 898

Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +    ++++ +    +A +LA+  +  + GG  GG+ ++ Q  G +    D A+  V
Sbjct: 899 -KVAHGCYISDEAISKGIDASELAKAVSAHI-GGKAGGKGNVVQGMGDSPEGIDAAVETV 956

Query: 893 ASFLKK 898
              L +
Sbjct: 957 TKLLAE 962


>gi|315613410|ref|ZP_07888319.1| alanine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315314645|gb|EFU62688.1| alanine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 874

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/920 (35%), Positives = 494/920 (53%), Gaps = 70/920 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G    + +++ L      ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG--EIVEEAVSGQKVEVVFDQTPFYAE 523
                               + + S + AIV       VE    G    ++F +TPFYAE
Sbjct: 462 ----------------NYNASQLPSKLVAIVVDNAEAEVETVSEG-TASLIFAETPFYAE 504

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQ+ D G  + +  ++  T    +KA      H +     L  + +  L+ID   R +
Sbjct: 505 MGGQVADHGQILDESGKVVATVTDVQKAPNGQPLHTVEVLAPLSLDKNYKLSIDKNRRHR 564

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +  NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ 
Sbjct: 565 VMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEK 624

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I + + V T   + + A   GA +L G KY   VRVV++     G +S  LCGGTHV +T
Sbjct: 625 IWEAIAVETVETDIDTAKEMGAMSLFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNT 679

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761
            EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE
Sbjct: 680 SEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVE 739

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + E+ R+LQ  +A+ K +           +  +     +++  +S  D+  L++  D  
Sbjct: 740 GLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNW 799

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++K  S +++LV    + K +VL+      +   +A +L +  A ++  G GGG+P MA 
Sbjct: 800 KQKDYSDVLVLVAA-IDDKVNVLVASK---IKEVHAGNLVKELAPIV-DGRGGGKPDMAM 854

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG N  K  + +  VA  L
Sbjct: 855 AGGSNQAKIQELLDAVAGKL 874


>gi|225868896|ref|YP_002744844.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|225702172|emb|CAW99880.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 872

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 500/918 (54%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I +   +NFW +   GP GP +EIF
Sbjct: 117 WFDFPKEKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAYDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIKEVEKLSGQAYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L +   + L+G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIIKREEETFARTIDAGSGHLDQLLAQLKEKGQDRLDGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA ++  GS   +    +L      ++F+ Y+    
Sbjct: 413 EDAGYK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQN--ETLAGITEPSEFL-YE---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  V+S +  I+   E  E    GQ   +VFDQTPFYAE G
Sbjct: 465 -------------------TETVASRLSVIIVDNERSEMVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D    +      +KA      H +     L  +    L ID++ R  + 
Sbjct: 505 GQVADHGVIKNDKGDLVARVIDVQKAPNGQPLHTVEVLASLALDTVYTLAIDHKRRYAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHKVIGKHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L + T   + E A A GA AL G KY   VRVV +     G +S  LCGGTH+S++ E
Sbjct: 625 KALAITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  I+ E  I +G RRI A+TGQ+A      Q++ LK +A  LKV Q   +  +V  +
Sbjct: 680 IGLFKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDTLKEIAHTLKVPQIEQLPSKVVSL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R LQ   A+ K +              +  D+ +++  +S  D+  L++  D  ++
Sbjct: 740 SEQIRDLQKEIAELKEKAAAAQAGDVFKKVQEANDLRYIASEVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +  S +++L     E K +VL+  ++D   R +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 RDYSDVLVLAASIGE-KVNVLVA-SKD--KRAHAGNLIKALAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A V   L
Sbjct: 855 GSDASKLSELLAAVPEHL 872


>gi|326693841|ref|ZP_08230846.1| alanyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 893

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/931 (36%), Positives = 504/931 (54%), Gaps = 72/931 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSAEVRQMFLDFFASKGHEVVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEM+GNFS G YFKE  I  AW+LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEEVIPWAWELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD+ RLY+TVY +D+EA K+W++ + L A  I  +   DNFW + E GP GP SEIF
Sbjct: 117 WYGLDKERLYVTVYPKDQEAKKIWEEKTDLPAGHIYEV--EDNFWDIGE-GPSGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227
           FD+G                 E ERY+EIWN+VF QF       +  +   LP  +IDTG
Sbjct: 174 FDRGPAFQDLPDDDPEMYPGGENERYLEIWNIVFSQFNHLPGMTDNSQYPELPHKNIDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNNI----VNHRVIVDHLRSS 282
           MGLER+ +V Q    N+D DLF  +IQA+E +    KY+G        + +VI DH+R+ 
Sbjct: 234 MGLERVVSVFQNGRTNFDTDLFLPIIQATEALSPNFKYDGTKDSDSNTSFKVIADHIRAI 293

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +F I+DG +P+NEGRGYV+RR++RRA+ + + LG     +  L+P +   M S YPE+++
Sbjct: 294 TFAISDGAMPSNEGRGYVIRRLLRRAVLHGQKLGIQGEFLTQLVPIVGEIMQSYYPEVLE 353

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
               I++T+ +E++RF  TL  GL LLD V+  +       ++G  AFKL DT+G PL++
Sbjct: 354 NAARIQKTVAAEEKRFNATLTGGLALLDDVIAAAKADGKTQISGADAFKLSDTYGFPLEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q+     GL  +D+  FN+AL+ QR+RARA      S   +     L +   A++++G+
Sbjct: 414 TQEQAAEAGLT-VDVDGFNEALQAQRARARAARSNDKSMGVQNAV--LTDLKVASEYVGW 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ-----GEIVEEAVSGQKVEVVF 515
             +                         S+ V AI+ Q       ++++AV+G++ ++VF
Sbjct: 471 SEIAVD----------------------SAEVVAIIGQDADGIDALLDQAVAGEQRQLVF 508

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+TPFYAE GGQ+ D G  +     +    +  +KA      H +     +    ++ L 
Sbjct: 509 DKTPFYAEMGGQVADFGTVLNKQGDVVAEVIDVQKAPNGQHVHTVNVLADITLGENVDLR 568

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D      +S NH+ATH+L  AL  +LG  V Q GS + PD LRFD T+  P+++A+L  
Sbjct: 569 VDMARHIAVSKNHTATHMLDQALRNVLGGDVHQAGSLVEPDYLRFDFTNEGPVSAADLDR 628

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  VN  IA+N P+     + E A   GA A+ G KY D VRVVS+     G  +    
Sbjct: 629 IEAMVNAEIAKNAPISWMETDIETAQQMGAVAVFGEKYGDVVRVVSI-----GDFNKEFD 683

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQ 753
           GGTH  ST E+ L  IVSES I AG+RRIEA+TG  A +    ++  LK++A+ +K    
Sbjct: 684 GGTHAQSTAELGLFKIVSESGIGAGVRRIEAVTGLEALALYKAEENALKAVAAQVKAQKI 743

Query: 754 GNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKE 808
                +V ++  E +  Q      + KL     D   + +   N  ++I++++       
Sbjct: 744 TEAPAKVADLQAELKATQRTLESVEAKLANAAADEVFNDVKTSNGHTYIVAQLPVSGMDG 803

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGG 867
           L+ V D  +    S +++L     + K ++++  + +       A DL +     +GGGG
Sbjct: 804 LRQVADNWKATYPSEVLVLAA-DIDGKVNLIVAASPEANAAGIKAGDLIKAITPRVGGGG 862

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            GGRP MAQ+GG N      A A VA FL +
Sbjct: 863 -GGRPDMAQAGGKNPAGIPDAFAAVADFLAQ 892


>gi|312379940|gb|EFR26076.1| hypothetical protein AND_08072 [Anopheles darlingi]
          Length = 975

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/967 (30%), Positives = 456/967 (47%), Gaps = 83/967 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
             S IR  FL+FF +  H  + SSS+IP +DPTL+F N+GM  FK IF G   P      
Sbjct: 12  TASQIRKIFLDFFAEKKHLYVHSSSVIPLDDPTLLFANAGMNQFKPIFLGTVDPSSEMAR 71

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+LLT+ 
Sbjct: 72  WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWELLTER 131

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        + D E   +W ++ G+    ++  +  DNFW M ETGPC
Sbjct: 132 LRLPKDRLYVTYFGGHPESGLEPDLECRSIWIEL-GIPEAHVLPGSMKDNFWEMGETGPC 190

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           +++    +EIWNLVF+Q+ ++      +LPK  ID GMG
Sbjct: 191 GPCSELHFDRIGGGRSVPELVNQDDPDVLEIWNLVFIQYNREQDGSLKLLPKKHIDCGMG 250

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
            ER+ +V+Q+K +NYD D+F  L  A              G +      + +RV+ DH R
Sbjct: 251 FERLVSVIQDKRSNYDTDVFVPLFDAIRAGTGAPPYGGRVGAEDTDGVDMAYRVLADHAR 310

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +PE
Sbjct: 311 TITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVDTVVELLGDTFPE 370

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I+  +  E+++F KTL RG  LL+  ++ LG  +++ GDVA++LYDT+G P+D
Sbjct: 371 VRKDPQHIKNVIGEEEQQFLKTLTRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPVD 430

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + Q +   + ++ ID+  + +A  E    ++       + T +    ++ E         
Sbjct: 431 LTQLMAEEKEMS-IDMEGYERAKHESYLISQGK-EKSKTATIDLDVHAISELQAKQL--- 485

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                        R          +  G    + A+   G  VEE  +GQ+  V+ D+T 
Sbjct: 486 --APTDDSTKYRYRAESTDPQAQYVFEGCRGRIVALRFGGAFVEEVTAGQECGVILDKTN 543

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FYAE+GGQ+ D G  +  G      +V      G +V H  V  G LR    +   +D  
Sbjct: 544 FYAESGGQIYDQGYLVKVGDESSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVDCHLDTV 603

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+    NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +T  ++   E  
Sbjct: 604 RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKAAMTIEQVGEAERL 663

Query: 639 VNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YEDG 686
             +++ +N+ V  +  N        G  ++    Y D VRV+S              + G
Sbjct: 664 TREVVRKNVQVFAKETNLAVAKSIRGLRSVFDEVYPDPVRVISFGVPVEQLAADPTSDAG 723

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL- 745
            ++S   CGGTH+  +G ++   I SE +I  GIRRI A+TG  A   L   +   + + 
Sbjct: 724 VLNSVEFCGGTHLHQSGHMVDFVITSEEAIAKGIRRIVALTGPEALKALQKTESLEQEVR 783

Query: 746 --------ASFLKVSQGNVVGRVEEIWEE-----------------YRKLQLIHAKRKLQ 780
                   +  +       V R+ E+ E+                  + L+     R+  
Sbjct: 784 QLREKIEASGTVTTGAKEFVRRIVELTEDVSQAVIPYVKKDELRTVLKNLKKTLDDRERA 843

Query: 781 LNV---------EDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVGI 830
                                D   + H +    ++K L S +  ++K       + V +
Sbjct: 844 AKAAVSVEVIVRAKELSEANRDAPVLVHRLEAFSNTKALDSALKEVRKINPEQSALFVSV 903

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++  K   L  V +  +++   A +     A  L GG GGG+P  AQ+ G +  KAD+ 
Sbjct: 904 DEDAGKIFCLASVPKGAVEKGLKANEWISHVAP-LMGGKGGGKPESAQASGGSWQKADEI 962

Query: 889 IAGVASF 895
           +    SF
Sbjct: 963 LELARSF 969


>gi|319939471|ref|ZP_08013831.1| alanyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811457|gb|EFW07752.1| alanyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 872

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/918 (35%), Positives = 489/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D +++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDHDSYNRWIS-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPEHQGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y  + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G      ++  L +    +++G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIIKSEEESFARTLHSGQHFAQSIVEELKEKGQSVISGTDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASVVKGGSMGMQN--ETLQNITAESHF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 +S+ + AIV   + VEE  SG K  +VF +TPFYAE G
Sbjct: 462 ----------------NYEKEALSAKLVAIVADDKEVEEVTSG-KAYLVFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G         +      +KA      H +     L       L ID+  R ++ 
Sbjct: 505 GQVADHGQIFDLAGNLVAQVVDVQKAPNGQPLHTVEVVAPLALNQEYKLEIDHNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG H +Q GS    + LRFD TH + +T+ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVLGKHATQAGSLNEVEFLRFDFTHFQAVTAEELRRIEQEVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTH+ +T E
Sbjct: 625 EAIDIKTIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHMKNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+T + A      +++ LK++A+ LKV Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDALKAIATTLKVPQMKEVSRKVEAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----IHAGNLIKELAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N     + +  V   L
Sbjct: 855 GSNQAAIQELLTAVPEKL 872


>gi|255994094|ref|ZP_05427229.1| alanine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993762|gb|EEU03851.1| alanine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 878

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/913 (36%), Positives = 497/913 (54%), Gaps = 66/913 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ IR  FL FF+  GH    S  L+P +D +L+  NSGM P K  F+G++ P  + +TT
Sbjct: 13  VNEIREKFLSFFEGKGHLRAHSFPLVPQDDDSLLLINSGMAPLKPFFSGEKTPPAERMTT 72

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D+DNVG T RH TFFEMLGNFSFG YFK+ +I+  ++ +T    +   
Sbjct: 73  SQKCIRTG----DIDNVGHTARHGTFFEMLGNFSFGDYFKKESIEWGYEFITDVLKIPSE 128

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L+ITVY +D+EA+K+W +  G+  +++ R+  +DNFW +   GPCGPCSEIF+D+GE  
Sbjct: 129 KLHITVYKDDDEAYKIWNEDVGIPGERLYRLGKDDNFWEIG-NGPCGPCSEIFYDRGEEY 187

Query: 184 PGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G        + +RY+E WN VF QF +    +   L   +IDTGMGLERMA ++Q   
Sbjct: 188 GCGSKECSPGCDCDRYLEFWNHVFTQFNKTQDGKYEPLSHPNIDTGMGLERMACIMQGVE 247

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR----VIVDHLRSSSFLIADGILPANEGR 297
           + +DID    +    E          +  +      VI DHLRS++F+++DGILP+NEGR
Sbjct: 248 SIFDIDTISFIKGFIEGKAMDAKVRLSSEDFNTGLNVITDHLRSATFMLSDGILPSNEGR 307

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RR++ +A  LG     ++     +      AYPEL+  K  I   ++ E  +
Sbjct: 308 GYVLRRLLRRSIIHANKLGLDSDALVETAGKVIETSEGAYPELVAQKEHIFTEIKDECAQ 367

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KTLD G  +L+G +  L ++  +IL+G+ AFKLYDT G P+++  +IL       +D 
Sbjct: 368 FKKTLDSGESILNGYIDALKEEGSDILDGERAFKLYDTFGFPIELTAEIL-EGFSMKVDF 426

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + +E Q+  AR      GSG        L E     +F GY+              
Sbjct: 427 EGFKKHMEYQKELARKGRKNEGSGF---DMVELGESIEPCEFTGYES------------- 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        ++ V  +V       EA S     V+ D+TPFY   GGQ  DTG  +
Sbjct: 471 -------------AAEVAKVV----FCTEADSEGVFYVILDRTPFYPRGGGQEPDTGKLV 513

Query: 536 GDGIRLQITDVQKKAEGIFV------HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
             G    + DV KK + I              +  +     +  T+D +NR     NH+A
Sbjct: 514 ISGNEFCVLDVSKKKDVIVHAVKFAGKEGKGSKISINKGDEVSATVDLKNRNAAMANHTA 573

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL  ++   ++Q GS ++ DGLRFD+ + KP++  EL+ IE  VND IA  LPV
Sbjct: 574 THLMHAALRELISKDITQAGSKVSCDGLRFDINYKKPLSYEELRDIEVWVNDRIASWLPV 633

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             RIM +++AI SGA  L   KY D VRVVS+E       SS LCGG HV +TG I    
Sbjct: 634 TKRIMKKDEAIKSGAIGLFSDKYKDDVRVVSIE-----DASSELCGGLHVDNTGYIGSFK 688

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV ES++ +G RRIEAITG+ A ++L+  D + K L S  K   GN+  +V++++ E + 
Sbjct: 689 IVKESAVSSGTRRIEAITGRAASNYLLQLDAEKKKLESLTKTQDGNIYDKVQKLYSEIKD 748

Query: 770 LQLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   +K K     +D+S       +  V F S I+ +++  ++K +  +L ++ ++ ++
Sbjct: 749 LKADLSKLKKGRASDDISGSIEIKDVEGVKFGSAILGDMEIPDMKDLATSLTQRDKNLVL 808

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L    + +K ++++   ED +D+ ++A DL +  A +  G  GGG+P MAQ+GG +   
Sbjct: 809 LLAS--QGEKFTMVMACGEDAVDKGYSAGDLIKQVAPIC-GAKGGGKPKMAQAGGGDEKL 865

Query: 885 ADQAIAGVASFLK 897
            D     V S LK
Sbjct: 866 FDDVCKAVLSALK 878


>gi|55820540|ref|YP_138982.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55822431|ref|YP_140872.1| alanyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|81559736|sp|Q5M126|SYA_STRT1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|81560908|sp|Q5M5L5|SYA_STRT2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|55736525|gb|AAV60167.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55738416|gb|AAV62057.1| alanyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 872

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/916 (35%), Positives = 494/916 (53%), Gaps = 68/916 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FDL + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDLPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEEFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ +   ++ +VI DH+RS +F I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L++L K   + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+ Y+    
Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL-YE---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  IV      +   SGQ   +VF+QTPFYAE G
Sbjct: 465 -------------------AETAESRLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G         +      ++A      H +   G L    +  L ID+  R ++ 
Sbjct: 505 GQVADHGTISDAAGTTVARVVDVQRAPNGQALHTVEVEGELVVGANYKLEIDHSRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G+H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +  PV T   + + A + GA AL G KY  RVRVVS+     G +S  LCGGTHV++T E
Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  I+ E  I +G RRI A+T + A      +++ LKS+A+ LK  Q   V  +V  +
Sbjct: 680 IGMFKIIKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+   LQ  +A  K +              +   V +++  +   D+  L++  D  ++
Sbjct: 740 QEQLHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
              S +++L    +EK   ++   +E+     +A +L ++ A ++  G GGG+P MA +G
Sbjct: 800 ADYSDVLVLAAHIREKVNVLVASKSEN----VHAGNLIKVLAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVAS 894
           G + N     ++ VA 
Sbjct: 855 GSDANSIQDLLSAVAE 870


>gi|315221813|ref|ZP_07863725.1| alanyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315189046|gb|EFU22749.1| alanyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 872

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 490/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAFELLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D +++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDHDSYNRWIS-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF         E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPEHQGLRLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y  + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKNYNPDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  +P +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINDPFLYKLVPTVGKIMESYYPEVLEKQDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G      ++  L      +++G   FKLYDT+G P+++ Q+I 
Sbjct: 353 EKIIKSEEESFARTLHSGQHFAQSIVEELKAKGQSVISGTDVFKLYDTYGFPVELTQEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFETAMKEQQERARASVVKGGSMGMQN--ETLQNITAESHF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 +S+ + AIV   E VEE  +G K  +VF +TPFYAE G
Sbjct: 462 ----------------NYEKEALSAKLVAIVAADEEVEEVSTG-KAYLVFSETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G       + +      +KA      H +     L       L ID+  R ++ 
Sbjct: 505 GQVADHGHIFDSEGQLIAQVVDVQKAPNGQPLHTVEVVAPLTLNQEYKLEIDHNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG H +Q GS    + LRFD TH + +T+ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVLGKHATQAGSLNEVEFLRFDFTHFQAVTAEELRRIEQEVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTH+ +T E
Sbjct: 625 EAIDIKTIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHMKNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+T + A      +++ LK++A+ LKV Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEDALKAIATTLKVPQMKEVSRKVEAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +           + H++   +F++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAASGEIFKNVHEVNGCSFIASQVSVSDAGALRTFADTWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAISEKVNVLVASKTKD----IHAGNLIKELAPIVN-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N     + +A V   L
Sbjct: 855 GSNQAAIQELLAAVPEKL 872


>gi|227877600|ref|ZP_03995654.1| alanyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256849054|ref|ZP_05554487.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|262047536|ref|ZP_06020491.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|227862794|gb|EEJ70259.1| alanyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256713830|gb|EEU28818.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|260572112|gb|EEX28677.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
          Length = 879

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/919 (34%), Positives = 487/919 (52%), Gaps = 62/919 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT   
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLPKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I  +E++T   KY     +    ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAISFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +   
Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  +  Q+ RAR     L S   + +  +L      + F         
Sbjct: 413 DAGLK-VDRKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           D      + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 461 --------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL +D + R  L  
Sbjct: 506 QVADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKGQEYVLKLDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN  I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +T +I
Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K     N+V +++ + 
Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +    Q        ++N            +  D+  ++         +L+ + D  +  
Sbjct: 741 SDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSG 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +S +++L   +  K   ++ +  + L     A +L +++A + GGGG GGRP+MAQ+GG
Sbjct: 801 NKSDVLVLAAENAGKANMIIALGQKALDKGLKAGNLIKIAAPIFGGGG-GGRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFLKK 898
            N    + AI  V   + K
Sbjct: 860 KNPAGLNDAIKAVIDEISK 878


>gi|225011405|ref|ZP_03701843.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
 gi|225003908|gb|EEG41880.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
          Length = 870

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 484/918 (52%), Gaps = 73/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  FL+FF+   H+++PS+ ++  NDPTLMFTN+GM PFK  F G   P  + 
Sbjct: 1   MKSF-EVRQQFLDFFESKKHKVVPSAPMVIKNDPTLMFTNAGMNPFKEYFLGNAVPSSKR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK+ AI+ AW+LLT+ + +
Sbjct: 60  VTDTQKCLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTEVYKI 119

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D  +LY+T+++         D EAF  WK I  L  ++I+     DNFW M + GPCGPC
Sbjct: 120 DPNKLYVTIFEGAPEEGIEKDNEAFDFWKAI--LPEERILLGNKQDNFWEMGDQGPCGPC 177

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IE+WNLVF++F ++       LP+  IDTGM
Sbjct: 178 SEIHVDIRSEEEKAKVSGAELVNQDHPQVIEVWNLVFIEFNRKANGSLEKLPEKHIDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ  T+NYD D+F  LI+  E +T   Y  + +     RVI DH+R+  F I
Sbjct: 238 GFERLCMVLQNTTSNYDTDVFTPLIREIETLTKSTYGEKQDTDRAIRVIADHIRTVYFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG+A+PELI+ + 
Sbjct: 298 ADGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIHLLVNTLSQQMGTAFPELIREQQ 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           L    +R E+  F KTLD+GLVLL+ ++++    +I +G   F+LYDT G P D+   I 
Sbjct: 358 LAFNVIREEENSFLKTLDQGLVLLESLITNSKSKKI-DGSKVFELYDTFGFPFDLTALIA 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G + +D   F +A+E      +       + +    W  L+E     +F+GYD L  
Sbjct: 417 GEKGFS-VDEEGFQKAMEV-----QKKRSRAAAASKAGDWVILQEDNVE-EFVGYDHLSV 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +   RK+                             A  G   ++VF+ TPFY E G
Sbjct: 470 KVKITRYRKMT---------------------------TAKEGDFYQLVFNLTPFYPEGG 502

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G        +      KK   + VH         + E +    +D + R++ S 
Sbjct: 503 GQVGDKGYLEASNGDIFYVLDTKKENNLIVHQTKSI--PSKLESTFTAVVDPKQRQRSSS 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHL+H AL ++LG+HV Q GS +     RFD +H   +T+ ELK++E  VN  I +
Sbjct: 561 NHTATHLMHQALRSVLGNHVEQKGSMVHSGMFRFDFSHFAKVTAEELKAVEQFVNARIQE 620

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +P+   R      AI  GA AL G KY D VR +          S  LCGGTHV++T  
Sbjct: 621 GIPLEEGRNTPYNSAIKEGAMALFGEKYGDTVRTIRFG------QSIELCGGTHVANTAV 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SES++ +GIRRIEAITG  A+ +   Q   L+++   LK +Q  +   ++ + 
Sbjct: 675 IWHFKITSESAVASGIRRIEAITGDAAKKYFEEQTSLLENVNELLKQAQDPL-KAIQSLQ 733

Query: 765 EEYRKLQLI---HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            E   L+      +K K Q+  +DL      I  + F +  + ++D + +K +   +  +
Sbjct: 734 SENTALKKELSVLSKLKTQILKDDLLQKIKTIDGIQFAASEV-DIDPQGMKDLSFEIGSQ 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           + + +I+++G  K  K  +   V++ L+     +A    R   K + GGG GG+P  A +
Sbjct: 793 LDN-VILVLGSVKSGKPLLSCYVSKSLVADKGKDASAFIRDLGKFIQGGG-GGQPFYATA 850

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N    ++A+      
Sbjct: 851 GGKNNEGMNEALDAAQGI 868


>gi|217077683|ref|YP_002335401.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|217037538|gb|ACJ76060.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 859

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/906 (38%), Positives = 518/906 (57%), Gaps = 57/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FLEFF+K GH++LPS+SLIP  DP L+FT +GMVPFK IF G+  PVY  +
Sbjct: 1   MRSDEIRRLFLEFFEKKGHKILPSASLIPE-DPQLLFTIAGMVPFKPIFWGKVDPVYTRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ +T+   + 
Sbjct: 60  ATCQKCVRT----TDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFVTQVLKIP 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + RL+I+VY +D EA+++W+K  G+ + KI+++   DNFW     TGPCGP +EIF+D  
Sbjct: 116 EERLWISVYKDDNEAYEIWRK-IGVPSSKILKLGKEDNFWGPAGPTGPCGPDTEIFYDTQ 174

Query: 181 ECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             +    G  P  +    R++EIWNLVF +F Q        L + +IDTG GLER+A ++
Sbjct: 175 RDVPTSDGKEPTPANTEGRFVEIWNLVFTEFYQDENGNLLPLKRKNIDTGAGLERVAAMM 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   NN+D DLF  +I+    +  ++Y+ +    V+ RVI DH+R+  FLI+DG+ P+NE
Sbjct: 235 QGVYNNFDTDLFAPIIEGICNILNVEYKKDEKIDVSIRVIADHIRALVFLISDGVFPSNE 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA  + +LLG   P +  L+  +  +MG+ YPE+++ K   +E +  E+
Sbjct: 295 GRGYVLRRILRRAARHGKLLGANAPFLHKLVDFVVNKMGNVYPEIVEKKEFTKEIILGEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           +RF + L++GL L++ V+     +  ++G++AFKLYDT+G PLDI++D+    G   +D 
Sbjct: 355 KRFLQNLNKGLELVEKVVRE--NNGKISGEMAFKLYDTYGFPLDILRDLAEENGY-VLDE 411

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +E+QR  A   + G    T    +  LK K   ++F+GY+              
Sbjct: 412 QGFNEYMEKQRLLA-KSAAGDVEFTKRTGYEDLKLK---SEFVGYEKYEEY--------- 458

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V AI +  E V EA      E+V ++TPFYAE GGQ+ DTG   
Sbjct: 459 --------------SKVLAI-KVSEFVNEAQDAD-CEIVLERTPFYAEKGGQVSDTGIIK 502

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+     +  V    EGI VH     +G L     +   ID + R+  + NH+ATHLLH 
Sbjct: 503 GENGEFLVEYVYSPTEGIIVHRG-KLKGRLSVGEKVYAKIDIEKRKATARNHTATHLLHA 561

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS +  + LRFD TH   ++  E++ +E  VN++I + + V+    +
Sbjct: 562 ALRKVLGTHVRQAGSLVESEKLRFDFTHFNALSVDEIEQVEKMVNNVILEAIDVIVEEKD 621

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A+  GA AL   KY D+VRVV V     G  S  LCGGTHV +TGEI L  IVSE S
Sbjct: 622 YDEAVKEGAMALFEEKYGDKVRVVKV-----GNFSEELCGGTHVKNTGEIGLFKIVSEGS 676

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRR+EAITG  +  +L   +     +   L+V+   V  R+E + EE +KL     
Sbjct: 677 VSAGIRRVEAITGLNSLMYLQRLENNWLKVRKVLEVNDEEVFRRIENMKEEIKKLNSEIK 736

Query: 776 KRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             K ++   D    +   I +V ++      ++   L+ + D L  K    +++L     
Sbjct: 737 SLKQKMVDIDSIYKNKKVINNVEYIVEKFEGLEVDVLRDLADRLVDK-GVDLVVLFDKVG 795

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           EK   ++     + L   +A ++A+  +KVLGGGG GGRP  AQ+GG +  K  +AI  +
Sbjct: 796 EKVILIVKKKKSNQL--LHAGNIAKELSKVLGGGG-GGRPDFAQAGGKDFGKVQEAIKKL 852

Query: 893 ASFLKK 898
              L++
Sbjct: 853 EEILRE 858


>gi|86142096|ref|ZP_01060620.1| alanyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85831659|gb|EAQ50115.1| alanyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 849

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/897 (35%), Positives = 477/897 (53%), Gaps = 72/897 (8%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           + S+ ++  NDPTLMFTN+GM  FK  F G   P    VT  QKC+R  GKHNDL+ VG+
Sbjct: 1   MASAPMVIKNDPTLMFTNAGMNQFKEFFLGNGTPKDTRVTDTQKCLRVSGKHNDLEEVGK 60

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE-------- 134
              HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D+ +LY+T+++ D+        
Sbjct: 61  DTYHHTMFEMLGNWSFGDYFKQDAIDWAWELLTEVYKIDKNKLYVTIFEGDDSEGLERDA 120

Query: 135 EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI----PGGLPGS 190
           EA+ +WKK   ++ D+I+     DNFW M + GPCGPCSEI  D           G    
Sbjct: 121 EAYDMWKK--HVAEDRILNGNKKDNFWEMGDQGPCGPCSEIHVDLRSEEEKAKTPGAELV 178

Query: 191 SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFK 250
           + +  + +EIWNLVF+QF ++       LP   IDTGMG ER+  VLQ+KT+NYD D+F 
Sbjct: 179 NADHPQVVEIWNLVFIQFNRKADGSLENLPARHIDTGMGFERLCMVLQDKTSNYDTDVFT 238

Query: 251 HLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
            LI+  E +   KY  +    +  RVI DH+R+ +F IADG LP+N G GYV+RRI+RRA
Sbjct: 239 PLIREIETIAHSKYGQSEETDIAIRVIADHVRAVAFSIADGQLPSNTGAGYVIRRILRRA 298

Query: 309 MCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + Y    L   EP +  L+  L  EM  A+PEL + + LI   ++ E++ F +TLD+GLV
Sbjct: 299 VRYGFTFLNTKEPFIYKLVSVLVDEMSKAFPELKKQQNLIFNVIKEEEQSFLRTLDQGLV 358

Query: 368 LLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           LLD +++     E+ +G  AF+LYDT+G P+D+   IL  +G   +D  +F   L++Q+ 
Sbjct: 359 LLDSIIAETKGKEV-SGAKAFELYDTYGFPIDLTALILSEKGYT-LDEKAFQTELQKQKD 416

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
           R+RA       G  E   +++ E+    +F+GYD L+    +   RK             
Sbjct: 417 RSRAA------GKIEAGDWTIVEEDSEEEFVGYDTLQTPVRITRYRK------------- 457

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
                         +     G + ++VF+ TPFYAE GGQ+GD G        +      
Sbjct: 458 --------------INTKKEGDQYQLVFNLTPFYAEGGGQVGDKGYLEAANGDVVYITDT 503

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           KK   + +H +  +        +    +D + R +   NHSATHLLH AL  +LG+HV Q
Sbjct: 504 KKENNLIIHLS--KNLPKNLNETFTAVVDAKQRHRTQANHSATHLLHQALRAVLGTHVEQ 561

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAA 666
            GS +    LRFD +H   +T+ ELK IE  VN  I + LP+   R +  + AIA GA A
Sbjct: 562 KGSMVHSGYLRFDFSHFSKVTAEELKDIEQFVNARIQEQLPLEEQRAIPYDQAIAEGAIA 621

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           L G KY D VR +          S  LCGGTH  +T +I    I SES++ +GIRRIEAI
Sbjct: 622 LFGEKYGDAVRTIRFG------KSMELCGGTHAENTADIWYFKIKSESAVASGIRRIEAI 675

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784
           TG     +   QDE+L+++ S L  +       +E +  E  +L+        +      
Sbjct: 676 TGDAVMQYFEEQDEQLEAVRSLLN-NAKEPAKSIESLQSENNELKKQLEVLLAEKAKNVK 734

Query: 785 ---DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                   ++  V F++  + ++D+  +K +   L  ++   + +L+   +  KA +   
Sbjct: 735 GELKTEIQEVNGVQFLAKEV-DLDANGIKDLAFQLGGEVDD-LFLLLASRQGGKALLSCY 792

Query: 842 VTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + ++L      NA  + R   K + GGG GG+P  A +GG N +   QA+  V ++L
Sbjct: 793 IDKELAKAKDLNAGTIVRELGKFIQGGG-GGQPFFATAGGKNPDGIAQALNEVKTYL 848


>gi|159037443|ref|YP_001536696.1| alanyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|205830198|sp|A8LXY8|SYA_SALAI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157916278|gb|ABV97705.1| alanyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 892

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/928 (34%), Positives = 495/928 (53%), Gaps = 72/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L  F+ NGH ++PS+ L   +DP L+F  +GM+ F   F GQ+   Y+  
Sbjct: 1   MKTAEIRRRYLAHFEANGHAVVPSAPLPAISDPNLLFVAAGMMQFVPYFLGQQTAPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK+ AI LAWDL TK     
Sbjct: 61  VSVQKCLRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDEAIPLAWDLATKSVDAG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY +D+EA+++W+   G+ AD+I+R    DNFWSM   GPCGPCSE+F
Sbjct: 117 GFGLDPERIWPTVYLDDDEAYEVWRS-VGVPADRIVRRGKADNFWSMGIPGPCGPCSELF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G + + +RY+E WNLVFMQFE+     +   P        +IDTGMGL
Sbjct: 176 YDRGPEY-GLEGGPAVDEDRYLEFWNLVFMQFERGPGTGKEDYPILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  + ++  + ++TG +Y             + V  RV+ DH+R
Sbjct: 235 ERMASILQGVDNLYEIDEVRPILDRAAELTGKRYGAHSGHVASESHPDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           ++  LI DG+ P+NEGRGYVLRRIMRRA+   RLLG+ E  M  LLP     M  +YPEL
Sbjct: 295 TALMLIGDGVTPSNEGRGYVLRRIMRRAIRSIRLLGWQERAMPELLPVARDCMSPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398
                 I +   +E++ F  TL  G  +LD  ++         ++G  AF+L+DT+G P+
Sbjct: 355 AADFGRIADYAYAEEDAFLSTLRAGTTILDTAIAESRTAGRRAISGAQAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +G+  +D   F + + +QR+RA+A +    +G  +   + ++ ++ G   F
Sbjct: 415 DLTLEIANEQGM-QVDAEGFRRLMADQRARAKADAQARKTGHVDLSAYRTVLDEGGPVTF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY  +                          S V+A++ +      AV G  VE+V D 
Sbjct: 474 TGYHEV-----------------------SRESTVRAVLGEAGPRAAAVEGDTVELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R   +    ID 
Sbjct: 511 TPFYAEGGGQQPDLGVITVGGGQVEVLDVQQPVPGLIVHRARVLRGEVRAGETGFAEIDA 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + L+ +E 
Sbjct: 571 SRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLRDVEQ 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ +  +L V   + +  +A   GA AL G KY ++VRVV V     G ++  LCGGT
Sbjct: 631 QVNEALLADLEVRAFVTSLAEARRIGAMALFGEKYGEQVRVVEV-----GDYARELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+ +G++ L+ I+SESSI +G+RR+EA+ G  A + L  +   +  LA   +V    V 
Sbjct: 686 HVARSGQLGLVKILSESSIGSGVRRVEALVGIDAFNFLAREHLLVARLAELYRVPSDQVA 745

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHII-SEVDSKELKS 811
            RVE+   + R  +    K + QL +   +       ++  V ++           ++++
Sbjct: 746 DRVEQTVSQLRDAEKELEKLRAQLVLGGAAALAAQATEVRGVAYVGTEAPEGASGNDVRT 805

Query: 812 VMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +   ++ +I      ++ V      KAS+++ V +    R  +A DL + +      G G
Sbjct: 806 LAQEIRGRIDPARPAVVAVAARSNGKASLVVAVNQAARSRGLSAADLVKAAFA----GRG 861

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG P +AQ GG    +A   +  V + +
Sbjct: 862 GGSPELAQGGGLPAAEAPGLLRTVENAI 889


>gi|149011620|ref|ZP_01832816.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|147764051|gb|EDK70983.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
          Length = 872

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/918 (35%), Positives = 493/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++  +    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEVE-VDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINELFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +T FYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + +  ++  T    +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 EALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  + E +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKAEGL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 QEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVAGKL 872


>gi|302834443|ref|XP_002948784.1| hypothetical protein VOLCADRAFT_89008 [Volvox carteri f.
           nagariensis]
 gi|300265975|gb|EFJ50164.1| hypothetical protein VOLCADRAFT_89008 [Volvox carteri f.
           nagariensis]
          Length = 980

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/939 (34%), Positives = 478/939 (50%), Gaps = 86/939 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL FF+  GH  LPSSSL+P  DPT++ T +GM+ FK +F GQ        
Sbjct: 81  MSGAEIREAFLSFFESKGHTRLPSSSLVPE-DPTVLLTIAGMLQFKPVFLGQAPRKVPTA 139

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR     ND+ NVG T RHHTFFEMLGNFSFG YFKE+AI+ AW+L T  F L 
Sbjct: 140 TTTQKCVRT----NDIGNVGVTARHHTFFEMLGNFSFGDYFKEQAIRWAWELSTGVFGLP 195

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R++++V++ED EA  +W+ + G+  ++I R+   DNFWS   TGPCGPCSE+++D   
Sbjct: 196 PERVWVSVFEEDGEAEAIWRDVVGVPPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHP 255

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G    S E+  R+IE +NLVFMQ  ++       L   +IDTGMGLERMA +LQ   
Sbjct: 256 E-RGTEGASLEDDTRFIEFYNLVFMQLNRKPDGSLEPLAAKNIDTGMGLERMAQILQGVP 314

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NNY+ DL   ++Q + ++  + Y   +       +VI DH R+ +++++DG+ P+N GRG
Sbjct: 315 NNYETDLIFPIVQKAAEIAAVDYHSASPAVKTALKVIGDHTRAVTYMLSDGVTPSNTGRG 374

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RR +   RLLG  E     +        G   P + +    I + L  E+  F
Sbjct: 375 YVLRRLLRRVVMKGRLLGIREVFTPAVAAVAVGLSGPCDPAVQKNAQRIYDELAREEGLF 434

Query: 359 GKTLDRGLVLLDGVLSHLGK---DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TL+RG   LD +LS         ++ G  AF LYDT G PL++ Q++  ARG   +D+
Sbjct: 435 VATLERGQKQLDELLSAATASTGSRVIGGADAFMLYDTFGFPLELTQELAEARG-VEVDV 493

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--------------------GAT 455
             F+  +E QR R++     +       +     + +                    G T
Sbjct: 494 AGFDGEMEAQRQRSKESRETVDLTAQAGLAQLAAQTHSRSWLPPGVRIPIRTQRMRVGPT 553

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            F GY   RG                          V  ++++G+ VE   +G + EV+ 
Sbjct: 554 SFTGYSATRGC-----------------------GRVVGLMREGKPVERVHAGDRCEVLL 590

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK---------KAEGIFVHHAIVERGILR 566
           D TPFYAE+GGQ+GD G  +      +     +             +FVH   V  G L 
Sbjct: 591 DVTPFYAESGGQVGDMGRLVLPAAAGEAEVAAEVAVRDCQKAAGGSVFVHSCEVVAGELG 650

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   RR++  +H+ATHLL  AL  +LG    Q GS +    LRFD   ++ 
Sbjct: 651 VGDAVNALVDDDLRRRVRAHHTATHLLQSALKIVLGPDTCQQGSLVNFQRLRFDFNLARA 710

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           ++ +EL  +E  VN  +AQ  P+ TR+M  ++A A+GA A+ G KY+D VRVV V     
Sbjct: 711 MSPSELTEVERLVNCWVAQAAPLETRVMGLQEAKAAGATAMFGEKYDDVVRVVDVPG--- 767

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              S  LCGGTHV +T EI    I+SES I +GIRR+EA+ G  A  +L   D  ++ LA
Sbjct: 768 --ISMELCGGTHVGNTAEIGAFKILSESGIASGIRRVEAVAGTAAVEYLHTVDGLVRGLA 825

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED------LSCHKIADVNFMSHI 800
             LKV    V  RV  +  E R  + + ++ K QL V         +      +  +   
Sbjct: 826 GQLKVKLEEVPSRVAALQSELRSTEKLLSELKAQLAVAQSQSLVGEAVTAPGGLKVLVAE 885

Query: 801 ISE-VDSKELKSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLAR 857
           +   V++K ++  +           ++L   + +  K + +  ++   +     A  +  
Sbjct: 886 LPGEVEAKAMQGAL------GDPAAVLLASRAVDGSKVNFVAALSPGAVKGGLQAGKVVG 939

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             AKV GGGG GG+P +AQ+GG + +K ++A+      L
Sbjct: 940 AVAKVCGGGG-GGKPALAQAGGRDASKTEEALEVGRKLL 977


>gi|183982183|ref|YP_001850474.1| alanyl-tRNA synthetase AlaS [Mycobacterium marinum M]
 gi|205830153|sp|B2HNC1|SYA_MYCMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|183175509|gb|ACC40619.1| alanyl-tRNA synthetase AlaS [Mycobacterium marinum M]
          Length = 901

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/932 (33%), Positives = 466/932 (50%), Gaps = 72/932 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYATA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L+ TVY +D+EA  LW++++GL AD+I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPEKLWATVYLDDDEAAGLWREVAGLPADRIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G            E  RY+EIWNLVFMQ E+     +        LP+ +IDTGMG+
Sbjct: 176 YDRGPDYGPEGGPVVNED-RYLEIWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ DL + +I          Y      + V +R+I DH R+++ LIA
Sbjct: 235 ERVALILQGVPNVYETDLLRPIIDLVAARAPRGYDQGNHADDVRYRIIADHSRTAAILIA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  A+LL     ++  L+  +   MG +YPEL      I
Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLNIDTAIVGDLMATVRDAMGPSYPELASDFDRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+  F +TL  G  L D V   +      +++G  AF L+DT+G P+++  ++ 
Sbjct: 355 NRIAVAEETAFNRTLASGSRLFDEVAGTTRSSGVSVVSGSDAFTLHDTYGFPIELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D   F + + +QR RA+A +        +   +      G T+F G+D L  
Sbjct: 415 SEAGLT-VDEGGFRELMAQQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELTS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-----QKVEVVFDQTPF 520
                                   + +  I   G+ V     G      +VE+V D+TP 
Sbjct: 474 -----------------------EARILGIFVDGKRVPVVAHGQAVDADRVELVLDRTPL 510

Query: 521 YAEAGGQLGDTGCAIGD----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           YAE+GGQ+ D G   G       R  +TDVQK A+ +++H   VE G       +V   D
Sbjct: 511 YAESGGQIADVGTISGTGSGSSARAAVTDVQKIAKTLWLHRVNVESGEFVEGDGVVAAAD 570

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R+  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   IE
Sbjct: 571 AGWRKGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRGQIE 630

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N  +  +  V T     E A A GA AL G  Y D VRVV +    GG  S  LCGG
Sbjct: 631 EVTNQAVQADFAVHTFTEQLEKAKAMGAMALFGESYPDEVRVVEI----GGPFSIELCGG 686

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV+++ +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V
Sbjct: 687 THVATSAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 746

Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHII-SEVDSKELK 810
             RV  + E  +  +    + +L               +I +V  ++  + SE+   +L+
Sbjct: 747 PARVASLVERLKAAEKELERARLASVRAAAVNAAAGAERIGNVWLVAQRMSSEMTPADLR 806

Query: 811 SVMDALQKKIQS--GIIMLVGISKEKK---ASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864
           +++  ++ K+ S   ++ L+      +      ++            A +L +  A  + 
Sbjct: 807 TLVGDIRGKLGSDPAVVALIAAPAGGESSTVPYVVAANRAAQGLGLGANELIKHLATAV- 865

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G GGG+  +AQ  G      D A+  + + +
Sbjct: 866 DGRGGGKADLAQGSGKKPAGIDAALEALRAEI 897


>gi|167753580|ref|ZP_02425707.1| hypothetical protein ALIPUT_01857 [Alistipes putredinis DSM 17216]
 gi|167658205|gb|EDS02335.1| hypothetical protein ALIPUT_01857 [Alistipes putredinis DSM 17216]
          Length = 847

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/893 (35%), Positives = 475/893 (53%), Gaps = 75/893 (8%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++  NDPTLMFTN+GM  FK+IF G     Y      QKC+R  GKHNDL+ VG    HH
Sbjct: 1   MVVKNDPTLMFTNAGMNQFKDIFLGNIPRPYPRAADTQKCLRVSGKHNDLEEVGHDTYHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKL 139
           T FEMLGN+SFG YFK+ AI  AW+LLT  + LD+ R+Y TV++         D+EA+ +
Sbjct: 61  TMFEMLGNWSFGDYFKKEAIGWAWELLTGVYGLDKSRMYATVFEGSPEDGVPFDQEAYDI 120

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP----GGLPGSSEEGE 195
           W +   L AD IIR   +DNFW M + GPCGPCSEI +D  +        G    ++   
Sbjct: 121 WLQY--LPADHIIRGNKHDNFWEMGDVGPCGPCSEIHYDLRDESEIAAVPGREMVNQGSP 178

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
             IEIWNLVFMQF ++       L    IDTGMG ER+  +LQ K +NYD D+F+  IQ 
Sbjct: 179 LVIEIWNLVFMQFNRKANGSLEPLAANCIDTGMGFERLCMILQGKKSNYDTDVFQPTIQR 238

Query: 256 SEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
              ++G  Y  +    V  RV+ DHLR+ SF IADG LP+N   GYV+RRI+RRA+ Y  
Sbjct: 239 IAAMSGKTYGADEKCDVAMRVVADHLRAISFSIADGQLPSNVKAGYVIRRILRRAVRYGY 298

Query: 314 L-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
             LG+ EP +  L+  L  +MG  +PEL   + LIE+ +  E+  F +TL  G+ LLDGV
Sbjct: 299 TYLGFNEPFICRLVAGLVDQMGGQFPELKAQQTLIEKVIEEEESSFLRTLATGINLLDGV 358

Query: 373 LSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           ++ + K   E ++G  AF LYDT+G P+D+ + I   +G   +D+ +F + L+ Q+ R+R
Sbjct: 359 MAEVRKSGGERISGKDAFLLYDTYGFPIDLTELIAREQG-IEVDLEAFEKELQAQKERSR 417

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                      +   +        ++FIGYD L     +   R+V  +            
Sbjct: 418 NA------AAVDTDDWKELIHIKQSEFIGYDTLSAEVKIARYRRVSSKGRVS-------- 463

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
                                ++VFD+TPFY  +GGQ+GD G       R+ +   +K+ 
Sbjct: 464 --------------------YQLVFDRTPFYGNSGGQIGDIGYIETANERIPVVATEKEN 503

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             I      +      T M++V   D + R+  + NH+ATHL+H AL  +LG+HV Q GS
Sbjct: 504 GLIIHIVTQLPENPEATFMAVV---DPEKRQAAANNHTATHLMHEALRKVLGTHVEQKGS 560

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLG 669
            +TP+ LRFD +H + +T  EL+ +E  VN  I  N P    R   +E+A A+GA  L G
Sbjct: 561 LVTPEYLRFDFSHFQKVTHEELRRVEQLVNRAIRANYPLEEKRDATKEEAAAAGAMMLFG 620

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            KY DRVR+V          S  LCGGTHVS+TG I    I++ES+I AG+RRIEA TG 
Sbjct: 621 EKYGDRVRMVRFG------TSVELCGGTHVSATGNIGFFKILNESAISAGVRRIEATTGA 674

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +A   +   ++ ++++A +L      ++  +++I E    L+      + +   E  +  
Sbjct: 675 KAEEVIYAAEDTMRNVADYLNNP--QILQSIKKIMESNEALKHEMEAIRREQVAEWAAKI 732

Query: 790 -----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                +   +  M+          +K +  A++ + ++ I++++G   + K ++ + + +
Sbjct: 733 VDSTPERGGMRLMATQTDRR-PDFIKDLAFAVRSRSKN-IVLVIGSINDGKPTLTVALGD 790

Query: 845 DLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           D++    NA  + R +AK + GG GGG+P +A +GG N +    AI      +
Sbjct: 791 DIVAQGVNAGVVVREAAKAINGG-GGGQPFLATAGGKNPDGIQAAIDKAVELI 842


>gi|302541105|ref|ZP_07293447.1| alanine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458723|gb|EFL21816.1| alanine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 828

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/863 (35%), Positives = 471/863 (54%), Gaps = 66/863 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ +P Y+ 
Sbjct: 1   MMESAEIRRRWLRFFEERGHTVVPSASLIA-DDPTLLLVNAGMVPFKPFFLGEVQPPYKR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
             +VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT     
Sbjct: 60  AVSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTGSVAD 115

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + LD  RL+ITVY++D+EA ++W+ + G+ A++I R+    N+WSM   GPCGPCSEI
Sbjct: 116 GGYGLDPERLWITVYEQDDEAERIWRDVVGVPAERIQRLGMGPNYWSMGVPGPCGPCSEI 175

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMG 229
            +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +   P        +IDTG+G
Sbjct: 176 NYDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGPGEGKENFPILGELPSKNIDTGLG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIA 287
           LER+A +LQ   N Y+ D  + ++  + ++TG+ Y  ++    + RV+ DH+R+S  LI 
Sbjct: 235 LERLAMILQGVQNMYETDTLRVVMDKATELTGVAYGSSHDSDVSLRVVADHMRTSVMLIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGYVLRRIMRRA+   R+LG  EP++  L+  +   MG  YPEL+  +  I
Sbjct: 295 DGVTPGNEGRGYVLRRIMRRAIRNMRILGAAEPVVGELVDVVLKTMGQQYPELLTDRKRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E    +E+  F KTL  G  +LD  +  +      +L GD AF L+DT G P+D+  ++ 
Sbjct: 355 ETVALAEESAFLKTLKAGTNILDTAVTDTKAAGGSVLPGDKAFLLHDTWGFPIDLTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464
             +GL+ +D   F + + EQR RA+A +    +G  +   +  + +  G+T+F GY    
Sbjct: 415 AEQGLS-VDEDGFRRLMREQRERAKADAKAKKTGHADLSAYREVADTSGSTEFTGYSDTS 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
           G                        S V  ++  G     A  G +VEVV D+TPFYAE 
Sbjct: 474 G-----------------------ESTVVGLLVDGVSSPAASEGDEVEVVLDRTPFYAEG 510

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL DTG   +  G  +++ DVQ+   G+ VH  +V+ G +         ID + RR +
Sbjct: 511 GGQLADTGKIKLASGAVVEVRDVQQPVPGVSVHKGVVQVGEVTVGSGAYAEIDVRRRRAI 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+++
Sbjct: 571 ARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPSAVPGGVLTDVEQKINEVL 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           ++ L V   +M+ +DA   GA A  G KY DRVRVV++     G  S  LCGGTHV +T 
Sbjct: 631 SRELDVTAEVMSMDDAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTA 685

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K     +  ++  +
Sbjct: 686 QLGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSQLTDLVKGRPEELPEKISGM 745

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMS----HIISEVDSKELKSVMDALQ 817
             + R  +    + + +  ++  +       DV  ++     +     + +L+ ++  ++
Sbjct: 746 LAKLRDAEKEIERFRAEKVLQAAAGLAEGAKDVRGVALASGRVPDGTTADDLRKLVLDVR 805

Query: 818 KKIQ--------SGIIMLVGISK 832
            ++           +I L  ++ 
Sbjct: 806 GRLDQKSGAVDRPAVIALFTVAN 828


>gi|225870098|ref|YP_002746045.1| alanyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|225699502|emb|CAW93052.1| alanyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 872

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 499/918 (54%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I +   +NFW +   GP GP +EIF
Sbjct: 117 WFDFPKEKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAYDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIKEVEKLSGHTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L +   + L+G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIIKREEETFARTIDAGSGHLDQLLAQLKEKGQDRLDGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA ++  GS   +    +L      ++F+ Y+    
Sbjct: 413 EDAGYK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQN--ETLAGITEPSEFL-YE---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  V+S +  I+   E  E    GQ   +VFDQTPFYAE G
Sbjct: 465 -------------------TETVASRLSVIIVDNERSEMVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D    +      +KA      H +     L  +    L ID++ R  + 
Sbjct: 505 GQVADHGVIKNDKGDLVARVIDVQKAPNGQPLHTVEVLASLALDTVYTLAIDHKRRYAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHKVIGEHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L + T   + E A A GA AL G KY   VRVV +     G +S  LCGGTH+S++ E
Sbjct: 625 KALAITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  I+ E  I +G RRI A+TGQ+A      Q++ LK +A  LKV Q   +  +V  +
Sbjct: 680 IGLFKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDILKEIAHTLKVPQIEQLPSKVVSL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R LQ   A+ K +              +   + +++  +S  D+  L++  D  ++
Sbjct: 740 SEQLRDLQKEMAELKEKAAAAQAGDVFKKVQEANGLRYIASEVSVSDAGVLRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +  S +++L     E K +VL+  ++D   R +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 RDYSDVLVLAASIGE-KVNVLVA-SKD--KRAHAGNLIKALAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A V   L
Sbjct: 855 GSDASKLSELLAAVPEHL 872


>gi|15675313|ref|NP_269487.1| alanyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71910945|ref|YP_282495.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|20532260|sp|Q99Z57|SYA_STRP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13622492|gb|AAK34208.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71853727|gb|AAZ51750.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 872

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  +
Sbjct: 855 GSDASKIAELLAAVAEIV 872


>gi|196231110|ref|ZP_03129970.1| alanyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196224940|gb|EDY19450.1| alanyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 925

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/969 (32%), Positives = 465/969 (47%), Gaps = 119/969 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
              + IR +FL+FF++  H ++PSSSL+P + P L+FTN+GM  F  IF G+ K      
Sbjct: 1   MTSAQIRQSFLDFFREKQHTIVPSSSLMP-DSPNLLFTNAGMNQFVPIFLGERKADVSSW 59

Query: 59  ---------------------QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
                                      QKC+RAGGKHNDLD+VG    HHTFFEMLGN+S
Sbjct: 60  ADAVNWFGEKNRDGTLNKTSDTRAADTQKCIRAGGKHNDLDDVGLDTYHHTFFEMLGNWS 119

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY----------DEDEEAFKLWKKI---S 144
           FG YFK+ AI+ AW+L+   +    +RLY T+Y          D DEEA+ LW +     
Sbjct: 120 FGDYFKKEAIEWAWELVVGRWKFPPQRLYATIYNPDKSIGDPADRDEEAWNLWAEKFRAV 179

Query: 145 GL-SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL 203
           GL  A  I+     DNFW M ETGPCGPCSE+  D            ++     IEIWNL
Sbjct: 180 GLDPAVHIVNGNKKDNFWMMGETGPCGPCSELHVDLTPAGDTKGALVNKGTAECIEIWNL 239

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE----------KTNNYDIDLFKHLI 253
           VF+QF          LP   +DTGMG ER+++++Q           K +NY+ D+F+ + 
Sbjct: 240 VFIQFNANPDGTFSPLPAKHVDTGMGFERVSSIIQGTKDFTDFANAKISNYETDIFRPIF 299

Query: 254 QASEQVTGMKY------------------EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
              E+  G +Y                  +    V  RVI DH+R+ SF IADGI P N 
Sbjct: 300 DEIEKQCGKRYTSTLPQPNAQGQIIPESEQEKVDVAFRVIADHIRTLSFAIADGIQPGNT 359

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            R YVLRRI+RRA+ Y R LG+TEP    L+  L   MG  +PE+   +  +EE L+ E+
Sbjct: 360 DRNYVLRRILRRAVRYGRTLGFTEPFFYKLVGVLARTMGDVFPEIRAKQKHVEEVLKREE 419

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F +TLD+G+ L    ++   K + L+G  AFKLYDT+G PLD+ + +   RGL  +DI
Sbjct: 420 ESFNRTLDKGIELFTSFVAS-EKQQQLSGTSAFKLYDTYGFPLDLTELMARERGLT-VDI 477

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR RAR           + I  S  E    T FIGYD       ++E    
Sbjct: 478 AGFEVEMEKQRKRAREAQ------VRDVIELSEIETKTPTHFIGYDHNHTGADVQEV--- 528

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                              +  +G+ V          V+ + +  YAE GGQ+GD+G   
Sbjct: 529 -------------------LSVKGKTV----------VIANNSVCYAEMGGQVGDSGEMT 559

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G G         +K+   ++H      G       + + +D   R  +  +H+ THLLH 
Sbjct: 560 GHGGNSWRIANTQKSGNTWLHFLEEADGP-AVGDHVTIQLDGARRGAIQRHHTVTHLLHW 618

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++    +Q GS + PD L FD   S  +T  +++ IE  VN+ I +N  V    M 
Sbjct: 619 ALHEVVSKEATQKGSFVGPDKLTFDFN-SAALTPVQVRDIERLVNERIVENGSVSWIEMP 677

Query: 656 REDAIASG-AAALLGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVS 712
             +    G      G KY + VRVV +  +      +S  LC GTH  +TGEI L  I +
Sbjct: 678 YAEVRGRGDIMQFFGDKYGETVRVVQIGGQATKLDGYSMELCAGTHTRATGEIGLFRINA 737

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES+I AG+RRIEA  G  A        ++L +LA+ +      +  R+E +  + ++L+ 
Sbjct: 738 ESAIAAGVRRIEAAAGLNAYDLANADTQRLHALATKVGSPLPELEKRIEGLLAQQKELEK 797

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                + +               I     +   +   D   L++V DAL+     G+ +L
Sbjct: 798 ALKAAQQREAAGRAKDLLANAATINGTPAIIANLGAADGDTLQTVADALKSNGFKGVTVL 857

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G +     +++  V+ D   +  A  + +  A ++GG G GG+P  A+ GG + +K ++
Sbjct: 858 GGTAN-GAVALVAAVSPDFTAKVQAGKIIQTIAPLVGGKG-GGKPEGARGGGKDPSKLEE 915

Query: 888 AIAGVASFL 896
           A+A   + L
Sbjct: 916 ALAQAKALL 924


>gi|325956136|ref|YP_004286746.1| alanyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|325332701|gb|ADZ06609.1| alanyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|327182944|gb|AEA31391.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
          Length = 879

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/921 (35%), Positives = 500/921 (54%), Gaps = 66/921 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K
Sbjct: 61  RRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +DE++FK+W K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLPKDKLYCTVYPKDEDSFKVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E++T   KY     +    ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIRGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF  TLD GL LLD ++       D+ ++G  AFK++DT+G P ++  +   
Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  +E Q+ RAR     L S   + +  +L      + F         
Sbjct: 413 DAGLK-VDKKGFDAEMEAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           D      + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 461 --------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ D G        L  ++ DVQ       + H +     +      +L +D + R  L 
Sbjct: 506 QVADHGNIYSQDGELVAKVIDVQHAPNDQNL-HFVDLILPVEKGKEYILKLDKERREGLR 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+K++E+ VN  I 
Sbjct: 565 HSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTALEPMTPREIKTVEELVNQKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTHV +T +
Sbjct: 625 EAIQVKTTITTPEEGEKMGALALFNGKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQ 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763
           I +  I SES++ AG+RRIEA+T ++A  +L  +   L  +   +K     N++ +++ +
Sbjct: 680 IGIFKITSESAVGAGMRRIEAVTSKKAYEYLAERSSLLDDIQEDVKATKPDNIIDKIDSL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             +    Q        ++N         +  +  D+  +S I    +  +L+ + D  + 
Sbjct: 740 ESDLHDSQKQVEALTKKINQAKAGQIFDNVKQAGDLTVISAIADVNNMNDLRELADNWKS 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             +S +++L   + + KA+++I +  + L     A DL +++A + GGGG GGRP+MAQ+
Sbjct: 800 GNKSDVLVLAA-NNDGKANMIISLDQKALDKGLKAGDLIKIAAPIFGGGG-GGRPNMAQA 857

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG      + AI  V   + K
Sbjct: 858 GGKKPEGLNDAIKAVIDEISK 878


>gi|293381586|ref|ZP_06627573.1| alanine--tRNA ligase [Lactobacillus crispatus 214-1]
 gi|290921856|gb|EFD98871.1| alanine--tRNA ligase [Lactobacillus crispatus 214-1]
          Length = 879

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/919 (34%), Positives = 487/919 (52%), Gaps = 62/919 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT   
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLPKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I  +E++T   KY     +    ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAISFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +   
Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  +  Q+ RAR     L S   + +  +L      + F         
Sbjct: 413 DAGLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           D      + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 461 --------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL +D + R  L  
Sbjct: 506 QVADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKGQEYVLKLDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN  I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +T +I
Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K     N+V +++ + 
Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +    Q        ++N            +  D+  ++         +L+ + D  +  
Sbjct: 741 SDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSG 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +S +++L   +  K   ++ +  + L     A +L +++A + GGGG GGRP+MAQ+GG
Sbjct: 801 NKSDVLVLAAENAGKANMIIALGQKALDKGLKAGNLIKIAAPIFGGGG-GGRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFLKK 898
            N    + AI  V   + K
Sbjct: 860 KNPAGLNDAIKAVIDEISK 878


>gi|145594371|ref|YP_001158668.1| alanyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|205830200|sp|A4X5Z0|SYA_SALTO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145303708|gb|ABP54290.1| alanyl-tRNA synthetase [Salinispora tropica CNB-440]
          Length = 892

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/928 (34%), Positives = 491/928 (52%), Gaps = 72/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L  F+ NGH ++PS+ L   +DP L+F  +GM+ F   F GQ+   Y+  
Sbjct: 1   MKTAEIRRRYLAHFEANGHAVVPSAPLPAISDPNLLFVAAGMMQFVPYFLGQQTAPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK+ AI LAW+L TK     
Sbjct: 61  VSVQKCLRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDEAIPLAWELSTKPVDAG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  R++ TVY +D+EAF++W+   G+ AD+I+R    DNFWSM   GPCGPCSE+F
Sbjct: 117 GLGLDPDRIWPTVYLDDDEAFQIWRS-VGVPADRIVRRGKADNFWSMGIPGPCGPCSELF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G   + +RY+E WNLVFMQFE+     +   P        +IDTGMGL
Sbjct: 176 YDRGPEY-GREGGPEVDEDRYLEFWNLVFMQFERGPGTGKEDYPILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  + ++  + ++TG +Y             + V  RV+ DH+R
Sbjct: 235 ERMASILQGVDNLYEIDEVRPILAKAAELTGKRYGAHSGQVASESHPDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           ++  LI DG++P+NEGRGYVLRRIMRRA+   RLLG+ E  M  LLP     M ++YPEL
Sbjct: 295 TALMLIGDGVIPSNEGRGYVLRRIMRRAIRSIRLLGWQERAMPELLPVARDCMSASYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398
                 I +   +E++ F  TL  G  +LD  ++         ++G  AF+L+DT+G P+
Sbjct: 355 ATDFGRIADYAYAEEDAFLSTLRAGTTILDTAIAETRTAGRRAISGAKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +GL  +D   F + + +QR+RA+A +    +G  +   + ++ ++ G   F
Sbjct: 415 DLTLEIASEQGL-QVDAEGFRRLMADQRARAKADAQARKTGHVDLSAYRTVLDEGGPVTF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY  +                          S V+A++        AV G+ VE+V D 
Sbjct: 474 TGYQEV-----------------------SRESTVRAVLGAASPHAAAVEGETVELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R   +    ID 
Sbjct: 511 TPFYAEGGGQQPDLGVITVGGGQVEVLDVQQPVPGLIVHRARVLRGEVRVGETGFAEIDT 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + L+ +E 
Sbjct: 571 DRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLRDVEQ 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ +  +L V   + +  +A   GA AL G KY ++VRVV V     G ++  LCGGT
Sbjct: 631 QVNEALLADLEVRAFVTSLAEARRIGAMALFGEKYGEQVRVVEV-----GDYARELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV  +G++ L+ I+SESSI +G+RR+EA+ G  A + L  +   +  LA   +V    V 
Sbjct: 686 HVGRSGQLGLVKILSESSIGSGVRRVEALVGIDAFNFLAREHLLVARLAELYRVPSDQVA 745

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SEVDSKELKS 811
            RVE+   + R  +    K + QL             ++  V ++           ++++
Sbjct: 746 ERVEQTVTQLRDAEKELEKLRAQLVLGGAAALAAQASEVRGVAYVGTEAPEGAAGNDVRT 805

Query: 812 VMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGG 868
           +   ++ +I      ++ V      KAS+++ V         +A DL +++      G G
Sbjct: 806 LAQEIRSRIDPARPAVVAVAARANGKASLVVAVNPAARSQGLSAADLVKVAFA----GRG 861

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG P +AQ GG    +A   +  V + +
Sbjct: 862 GGSPELAQGGGLPAAEAPGLLRTVENAI 889


>gi|315037651|ref|YP_004031219.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|312275784|gb|ADQ58424.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
          Length = 879

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/921 (35%), Positives = 501/921 (54%), Gaps = 66/921 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K
Sbjct: 61  RRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +DE++FK+W K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLPKDKLYCTVYPKDEDSFKVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E++T   KY     +    ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIRGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF  TLD GL LLD ++       D+ ++G  AFK++DT+G P ++  +   
Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  +E Q+ RAR     L S   + +  +L      + F         
Sbjct: 413 DAGLK-VDKKGFDAEMEAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           D      + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 461 --------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ D G        L  ++ DVQ       + H +     +      +L +D + R  L 
Sbjct: 506 QVADHGNIYSQDGELVAKVIDVQHAPNDQNL-HFVDLILPVEKGKEYILKLDKERREGLR 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+K++E+ VN  I 
Sbjct: 565 HSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTALEPMTPREIKTVEELVNQKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTHV +T +
Sbjct: 625 EAIQVKTTITTPEEGEKMGALALFNGKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQ 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763
           I +  I SES++ AG+RRIEA+T ++A  +L  +   L ++   +K     N++ +++ +
Sbjct: 680 IGIFKITSESAVGAGMRRIEAVTSKKAYEYLAERSSLLDNIQEDVKATKPDNIIDKIDSL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             +    Q        ++N         +  +  D+  +S I    +  +L+ + D  + 
Sbjct: 740 ESDLHDSQKQVEALTKKINQAKAGQIFDNVKQAGDLTVISAIADVNNMNDLRELADNWKS 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             +S +++L   + + KA+++I +  + L     A DL +++A + GGGG GGRP+MAQ+
Sbjct: 800 GNKSDVLVLAA-NNDGKANMIISLDQKALDKGLKAGDLIKIAAPIFGGGG-GGRPNMAQA 857

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG      + AI  V   + K
Sbjct: 858 GGKKPEGLNDAIKAVIDEISK 878


>gi|300919279|ref|ZP_07135796.1| alanyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300413634|gb|EFJ96944.1| alanyl-tRNA synthetase [Escherichia coli MS 115-1]
          Length = 784

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQTDVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|299141813|ref|ZP_07034948.1| alanine--tRNA ligase [Prevotella oris C735]
 gi|298576664|gb|EFI48535.1| alanine--tRNA ligase [Prevotella oris C735]
          Length = 886

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/935 (33%), Positives = 483/935 (51%), Gaps = 89/935 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-VYQA 60
              + +R ++ +FF+  GH+++ S+ ++  +DPTLMFTN+GM  +K+I  G + P     
Sbjct: 1   MTANEVRESYKKFFEGKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     L
Sbjct: 61  RVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVSVLHL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY+TV++         D+EA   W K   + AD II    +DNFW M +TGPCGPC
Sbjct: 121 NPEDLYVTVFEGSPEEGLERDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           +EI  D    + +    G    +++  + IEIWN+VFMQ+ ++       LP   IDTGM
Sbjct: 179 TEIHVDSRTPEEKAKMPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNHR 273
           G ER+  +LQ+K +NYD D+F+ +I+  E ++G KY                    +  R
Sbjct: 239 GFERLVRMLQDKHSNYDTDIFQPIIKQIEAISGKKYGFTTPTGLNGEGKDEQEKIDIAMR 298

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332
           V+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  +  LLP L  E
Sbjct: 299 VVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLLPVLVQE 358

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKL 390
           MG AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L       L+G  AF+L
Sbjct: 359 MGQAYPELSAQQELIARVMKEEEDSFLRTLEKGINLLNGDMDELKAHGQTELDGTSAFRL 418

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + I    G   +D   FN+ + +Q++RAR  ++          W  ++E
Sbjct: 419 FDTYGFPLDLTELICREHGYT-VDEKGFNEEMAKQKARARNAAV-----VENGDWEVIRE 472

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G   F+GYD    +  +   RKV  +K                               
Sbjct: 473 --GEQVFVGYDYTEYTCHILRYRKVTQKKNTF---------------------------- 502

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V D TPFY E GGQ+GD G  + +   ++I D +++          V++     +  
Sbjct: 503 YEIVLDYTPFYGEMGGQVGDQGTLVSENETVEIIDTKRENNQSIHI---VKQLPKDLQAE 559

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D + R   + NH+ATHLL +AL  +LG HV Q GS + P  LRFD +H + +T  
Sbjct: 560 FMACVDVEKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDPTTLRFDFSHFQKVTEE 619

Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           EL+ +E  VN +I ++ P+   R    E+A   GA AL G KY D+VRVV          
Sbjct: 620 ELRQVEKLVNKMIREDFPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFGP------ 673

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   CGG H  STG I    I+SESS+ AGIRRIEA+TGQ     +    + +  L S  
Sbjct: 674 SCEFCGGIHAKSTGRIGFFKIISESSVAAGIRRIEALTGQACEDTIYALQDMMNDLKSMF 733

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV 804
             +  ++   +++   E+ +++    K + Q               +  V  +  ++  +
Sbjct: 734 N-NSKDLKATLKKFIGEHDEMRKEIEKFQAQAVERTKEELLKRAQNVNGVQVIKAVLP-L 791

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKV 862
           +    K +   L++ I   +++++G +   K  + ++ ++D++     NA  +   +AK+
Sbjct: 792 EPAAAKDLAFKLRENISENLVVVIGSTAGNKPLLTVMFSDDMVKDHSLNAGTIIHEAAKL 851

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + GG GGG+PH AQ+GG N +    A+  V     
Sbjct: 852 IQGG-GGGQPHYAQAGGKNLDGISAAVDKVIELAN 885


>gi|295692276|ref|YP_003600886.1| alanyl-tRNA synthetase [Lactobacillus crispatus ST1]
 gi|295030382|emb|CBL49861.1| Alanyl-tRNA synthetase [Lactobacillus crispatus ST1]
          Length = 879

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/919 (35%), Positives = 487/919 (52%), Gaps = 62/919 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT   
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLPKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E++T  K  G N       ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDDKKYGVNKEDTTAFKIIADHVRAVSFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF  TLD GL LLD ++       D+ ++G  AFK++DT+G P ++  +   
Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  +  Q+ RAR     L S   + +  +L      + F         
Sbjct: 413 DAGLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           D      + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 461 --------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL +D + R  L  
Sbjct: 506 QVADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKGQEYVLKLDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN  I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +T +I
Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K     N+V +++ + 
Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +    Q        ++N            +  D+  ++         +L+ + D  +  
Sbjct: 741 SDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSG 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +S +++L   +  K   ++ +  + L     A +L +++A + GGGG GGRP+MAQ+GG
Sbjct: 801 NKSDVLVLAAENAGKANMIIALGQKALDKGLKAGNLIKIAAPIFGGGG-GGRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFLKK 898
            N    + AI  V   + K
Sbjct: 860 KNPAGLNDAIKAVIDEISK 878


>gi|323188423|gb|EFZ73709.1| alanyl-tRNA synthetase [Escherichia coli RN587/1]
          Length = 784

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 493/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F+ A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFDAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKS 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|254779785|ref|YP_003057891.1| alanyl-tRNA synthetase [Helicobacter pylori B38]
 gi|254001697|emb|CAX29926.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Helicobacter
           pylori B38]
          Length = 847

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/892 (36%), Positives = 485/892 (54%), Gaps = 57/892 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GH + PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFELCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++    G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKTSWKGKQNNA---DFSAILNAYAPNEFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 + V        + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     
Sbjct: 456 ----CPAKVLGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLLKDNEEAA 511

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LG
Sbjct: 512 LVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLG 569

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +    LRFD +H+K + + EL+ +ED VN  I ++L      M    A   
Sbjct: 570 SHVSQAGSLVESKRLRFDFSHAKALNNEELEKVEDLVNAQIFKHLNSHVEHMPLNQAKDK 629

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RR
Sbjct: 630 GALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRR 684

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q           
Sbjct: 685 IEAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APV 735

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V
Sbjct: 736 SMDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGV 791

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                    A   A   A++L GG GGGR   A +GG +      A+    +
Sbjct: 792 KNAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDIENLQAALNLAKN 839


>gi|28895717|ref|NP_802067.1| alanyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|73919472|sp|Q878X3|SYA_STRP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28810966|dbj|BAC63900.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
          Length = 872

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKDIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  +
Sbjct: 855 GSDASKIAELLAAVAEIV 872


>gi|62185445|ref|YP_220230.1| alanyl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|81312406|sp|Q5L512|SYA_CHLAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|62148512|emb|CAH64283.1| putative alanyl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 875

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/897 (36%), Positives = 488/897 (54%), Gaps = 48/897 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H ++ SS + P NDP+++FTN+GM  FK+IF  +E   Y   
Sbjct: 1   MLSNTLRSNFLKFYANRHHTIVSSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI  AW++    F+ D
Sbjct: 61  TTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+Y TV+++D+EAF LW     L +++I R+T  DNFWSMAETGPCG CSE+ FD+GE
Sbjct: 121 PDRIYATVHEKDDEAFALW--EQHLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGE 178

Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    EGER++E WNLVFM+F +  +     LP   +DTG GLER+ +++   
Sbjct: 179 SFGTATSPLEDSEGERFLEYWNLVFMEFNRSAEGSLLALPNKHVDTGAGLERLVSIISGT 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ + LI  +E ++G KY  +       RVI DH+RS SF I DG++P N  RG
Sbjct: 239 NTVFEADVLRLLISKTETLSGEKYHADEPLGAAFRVIADHVRSLSFAIVDGLIPGNTERG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RR++ Y + LG+T+P +  ++PAL   MG AYPEL  +   I+E +  E+E +
Sbjct: 299 YVLRKILRRSVNYGKRLGFTQPFLAEIVPALVDAMGEAYPELRLSVSQIQEVMTIEEENY 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            K+L RG  LL  VL        ++G+ AFKL DT+GLPLD +  +      + +D+ +F
Sbjct: 359 FKSLHRGGNLLQQVLKSSSSSSTISGEDAFKLKDTYGLPLDEIALLAKDYNFS-VDLDTF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            Q  +E + R+R + +      T+ ++ +L     +T F+GY  L    F          
Sbjct: 418 YQLEKEAKERSRKNVIK-SHNATDTVYDALSLGENST-FVGYHDLSCDTF---------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++AI++ GE V      +K  ++  +TPFYAE GGQ+GD+G      
Sbjct: 466 -------------IEAIIKNGEQVSYLKEKEKGILILKETPFYAEKGGQVGDSGEIFCSD 512

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       G+ +HH  V +G L +  ++   +    R+ +S NH+  HLLH AL 
Sbjct: 513 GTFIVSHTTSPKAGMVIHHGEVSQGQLHSAQAVTAQVHCLRRKNISNNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH K I   +L SIE  VN+ I +N  V TR     D
Sbjct: 573 MTLGDHIRQAGSFVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREAAYSD 632

Query: 659 -AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
              +       G KY+D VRVVS         S  LCGGTH   TG++    I+ E ++ 
Sbjct: 633 VMNSKEIKQFFGDKYSDVVRVVSAG------FSHELCGGTHADFTGDLGYFRILKEHAVA 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEA+TG+ A       ++ L  +A  L+  +  ++ +++ I +E ++   + +  
Sbjct: 687 TGIRRIEAVTGKEAEVLARQDNQDLNEIALILQSPRDQILNKLQNILDEKKEQTKLISDL 746

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L    L        +I DV++  + + E +S  L+   + L +KI   ++ L    K
Sbjct: 747 ENKLIYSLLDKVIDRCQQIEDVSYFIYHLPESESHRLQQYANCLHQKIPVRLVSLWTTQK 806

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             K  +   +++DL+     A DL ++      GG  GG+   AQ      +   QA
Sbjct: 807 NGKYIIFSRISDDLVKQGLKAKDLLQVLLTPC-GGRWGGKDIFAQGS---ADSLPQA 859


>gi|58336754|ref|YP_193339.1| alanyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227903315|ref|ZP_04021120.1| ala-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
 gi|75358009|sp|Q5FLW6|SYA_LACAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58254071|gb|AAV42308.1| ala-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227868944|gb|EEJ76365.1| ala-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
          Length = 879

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 491/918 (53%), Gaps = 64/918 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K
Sbjct: 61  RRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLPKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E++T  K  G N       ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENDEDTTAFKIIADHVRAVSFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEIMDQRGFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF  TLD GL LLD ++       D+ ++G  AFK++DT+G P ++  +   
Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIEKAKNSDDKTISGKDAFKMFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S   + +  +L      ++F         
Sbjct: 413 DAGLK-VDKKGFDAEMQAQKDRARKARGDLQSMGRQDV--TLMNIKDKSEF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                            +     + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 461 --------------EYGVYEEPHAKLIDIVVDDKLVDKAN-GEHATLVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL ID + R  L  
Sbjct: 506 QVADHGGIYNQDGELVAKVTDVQHAPNDQNLHFVDLILPMEKGQEYVLKIDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELKS+E+ VN  I  
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPRELKSVEELVNQKIWD 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL   KY D+VRVV +        SS  CGGTHV +T +I
Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----SDFSSEFCGGTHVDNTDQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I SES++ AG+RRIEA+T ++A  +L  +   L  +   +K     N+V +++ I 
Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQEVVKATKPENIVDKIDSIE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            E R  Q        ++N         +  +  D+  ++ I       +L+ + D  +  
Sbjct: 741 NELRDSQKQVEALTKKINQAKAGEIFDNVKQAGDLTVIAAIADVNGMNDLRELADNWKSG 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L     + KA+++I + +  L     A DL + +A + GGGG GGRP+MAQ+G
Sbjct: 801 NKSDVLVLAA-ENDGKANMIISLDQRALDKGLKAGDLIKKAAPLFGGGG-GGRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFL 896
           G      + AI  V   +
Sbjct: 859 GKKPEGLNDAIKAVIDEI 876


>gi|300975107|ref|ZP_07172874.1| alanyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300308788|gb|EFJ63308.1| alanyl-tRNA synthetase [Escherichia coli MS 200-1]
          Length = 784

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    E+
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSER 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|300781084|ref|ZP_07090938.1| alanine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532791|gb|EFK53852.1| alanine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 893

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/927 (34%), Positives = 478/927 (51%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
                IR  F + F   GH  +PS+SLI  +DPTL+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRDRFTQHFVDAGHIPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQTPPFDSG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+LAW LLT    
Sbjct: 60  TATSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIELAWSLLTNSQA 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY ED+EA ++W+   G+ A++I R+   DNFWSM   GPCGP SE
Sbjct: 116 DGGFGLDPERLWVTVYTEDDEAAEIWENKIGVPAERIQRMGMEDNFWSMGVPGPCGPSSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGM 228
           I++D+G    G   G   +  RY+EIWNLVFM+  +     K    I   LP  +IDTG+
Sbjct: 176 IYYDRGPE-HGKEGGPIADDNRYMEIWNLVFMESIRGEGDKKGGFEILGELPNKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY------EGNNIVNHRVIVDHLRSS 282
           G+ER+A +LQ   N Y+ DL   +I+A+E++TG  Y         + V  RVI DH R++
Sbjct: 235 GIERLACILQGVDNVYETDLLHPVIEATEKLTGTTYGAGGKEGELSDVRFRVIADHSRTA 294

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
             +I DG+ P+NEGRGY+LRR++RR +  ARLLG     +   +  +   M  ++PE+ Q
Sbjct: 295 MMIILDGVTPSNEGRGYILRRLLRRIVRSARLLGAQGTTIETFMNTIMDTMAPSFPEIEQ 354

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDI 400
            +  I     +E++ F KTL+ G    D   +        +L G  AF+L+DT+G P+D+
Sbjct: 355 NRERILRVAVNEEKAFLKTLESGTHRFDEAAATVKGSGQTVLPGGQAFELHDTYGFPIDL 414

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D+ +F+ A++EQR RA+A S    +G  ++  +        T+F+G+
Sbjct: 415 TLEMAAEAGLE-VDMAAFDAAMKEQRDRAKADSKAKKTGNIDESLYREWVDAHPTEFVGF 473

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D L                          S V  +V+ GE V E   G +VEV+ D TP 
Sbjct: 474 DTLDHD-----------------------SKVIGLVRGGEKVGEVGQGDEVEVILDITPM 510

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAE-GIFVHHAIVERGILRTEMSLVLTIDYQN 579
           YAE GGQL D G  +     L + DVQK     ++VH A VE G L    ++   ++   
Sbjct: 511 YAEGGGQLADRGRIVVGDTVLSVHDVQKVGNKKLWVHKATVENGGLDLGQTVRTEVNPTW 570

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R      H+ATHL+H AL  +LG    Q GS   P  LRFD  ++  +TSA+L  I    
Sbjct: 571 RHGARQAHTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTSAQLDEIAVIA 630

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  +  +  V T   + E A   GA AL G  Y D VRVV +    GG  S  LCGGTHV
Sbjct: 631 NQAVDADFAVNTFETSLERAKEMGAMALFGENYGDEVRVVEI----GGPFSIELCGGTHV 686

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             + +I  + ++ ESS+ +G RRIEA +G  + +    +      LA  LK     +  R
Sbjct: 687 EHSSQIGPVAVLGESSVGSGARRIEAYSGMDSFAFFSKEAALASGLAEELKTPTDQLPER 746

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII-SEVDSKELKSVM 813
           + ++ E  R  +      + +               I D+ F++  +   +   +++++ 
Sbjct: 747 IAQLTERLRAAEKEIENLRKKELANQTGELVKQAETIGDIKFLAVKLPDGLTGGDMRTMA 806

Query: 814 DALQKKIQSG-IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
             L+ ++ S   ++++  S + K    +  T   +D+   A     +    +GG G GG+
Sbjct: 807 TDLRGRLGSDPAVIVLASSTDGKVPFAVAATPGAVDKGIKAGQYVGMFGGYVGGKG-GGK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P +AQ  G + +  +     +   + K
Sbjct: 866 PDLAQGSGSDASGIEAGFTALREEIGK 892


>gi|300976926|ref|ZP_07173678.1| alanyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|301027052|ref|ZP_07190429.1| alanyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|301049555|ref|ZP_07196510.1| alanyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300298680|gb|EFJ55065.1| alanyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300395217|gb|EFJ78755.1| alanyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|300409940|gb|EFJ93478.1| alanyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|315293661|gb|EFU53013.1| alanyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|315298718|gb|EFU57972.1| alanyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|324005757|gb|EGB74976.1| alanyl-tRNA synthetase [Escherichia coli MS 57-2]
          Length = 784

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|327251414|gb|EGE63100.1| alanyl-tRNA synthetase [Escherichia coli STEC_7v]
          Length = 784

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGVNFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|300930550|ref|ZP_07145945.1| alanyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300947031|ref|ZP_07161254.1| alanyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300954931|ref|ZP_07167347.1| alanyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|301645328|ref|ZP_07245276.1| alanyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|312973095|ref|ZP_07787268.1| alanyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|300318120|gb|EFJ67904.1| alanyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300453345|gb|EFK16965.1| alanyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300461571|gb|EFK25064.1| alanyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|301076398|gb|EFK91204.1| alanyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|310333037|gb|EFQ00251.1| alanyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|315615081|gb|EFU95718.1| alanyl-tRNA synthetase [Escherichia coli 3431]
          Length = 784

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 491/820 (59%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNTQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|312965610|ref|ZP_07779840.1| alanyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|312289759|gb|EFR17649.1| alanyl-tRNA synthetase [Escherichia coli 2362-75]
          Length = 784

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LNEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|222153358|ref|YP_002562535.1| alanyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|222114171|emb|CAR42689.1| alanyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 873

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/916 (35%), Positives = 495/916 (54%), Gaps = 66/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + F 
Sbjct: 64  TNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y ED +++  W  + G+    +I +   +NFW +   GP GP +EIFFD+
Sbjct: 120 FPKEKLYMTYYPEDMDSYNRWISL-GVDPSHLIPL--EENFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231
           GE                E +RYIEIWN+V  QF    +    E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I   E+++G  Y+ + + ++ +VI DH+R+ SF I DG 
Sbjct: 236 RLVAVMQGAKTNFETDLFMPIISEVEKLSGKPYDQDGDNMSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA+ + R LG TE  +  L+  +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGRRLGITETFLYKLVVTVGQIMESYYPEILEKRDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++ E+E F +T+D G   LD +L+ L ++  + L G   FKLYDT+G P+++ +++    
Sbjct: 356 IKREEETFARTIDAGSGHLDQLLAQLKEEGKDTLEGKDIFKLYDTYGFPVELTEELAEDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   ID   F  A++EQ+ RARA  +  GS   +    +L     A+ F           
Sbjct: 416 GYK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGITEASVF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ +  IV   E  +    GQ   +VFD+TPFYAE GGQ+
Sbjct: 462 -------------SYEEETLTANLSVIVVDNERSDMVSEGQ-ALLVFDRTPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G    D   +       +KA      H +     L  + S VL ID++ R  +  NH
Sbjct: 508 ADHGVIKNDKGDILAKVTDVQKAPNGQALHTVDVLASLSIDSSYVLEIDHKRRYAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G H +Q GS    + LRFD TH + +T+ EL+ IE+ VN  I   +
Sbjct: 568 TATHLLHAALHNIIGDHATQAGSLNEEEFLRFDFTHFEAVTAEELRRIEEEVNQQIWNAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A + GA AL G KY   VRVV++     G +S  LCGGTH+S+T EI L
Sbjct: 628 AVNTIETDVDTAKSMGAMALFGEKYGKVVRVVTI-----GDYSVELCGGTHLSNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TGQ+A      +++ LK +A+ LK  Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILALTGQQAFEAFRQREDALKEIAANLKAPQLKEVPAKVASLSEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  +A+ K +              +   + +++  +S  D+  L++  D  ++K  
Sbjct: 743 VRDLQKENAELKEKAAAAQAGDLFKDVKEANGIRYIAKQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S I++LV    EK   ++   T+D     +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDILVLVASIGEKVNVLVASQTKD----VHAGNLIKELAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFLK 897
            ++ +  ++ VA  +K
Sbjct: 858 ASQIETLLSSVADKMK 873


>gi|300899932|ref|ZP_07118138.1| alanyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300356519|gb|EFJ72389.1| alanyl-tRNA synthetase [Escherichia coli MS 198-1]
          Length = 784

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 491/820 (59%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGTNFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|111224623|ref|YP_715417.1| alanyl-tRNA synthetase [Frankia alni ACN14a]
 gi|111152155|emb|CAJ63885.1| alanyl-tRNA synthetase [Frankia alni ACN14a]
          Length = 884

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/915 (35%), Positives = 480/915 (52%), Gaps = 56/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR+ FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G     +   
Sbjct: 4   MDTAEIRSRFLNHFARRGHTIVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLATPWPRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQK VR      D++NVGRT RH +FF+M GNFSFG YFK  AI  A++LL   F   
Sbjct: 63  TSVQKVVRTV----DIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELLVDGFGFK 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA  +W+++  L A++I R    DNFWSM   GPCGPCSEI+FD+G 
Sbjct: 119 PDDLWATVYLDDDEAEGIWREL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRGA 176

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236
              G   G   + ERY+E+WNLVFMQ+E+             LP  +IDTGMGLERMAT+
Sbjct: 177 AY-GREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPILRELPARNIDTGMGLERMATI 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++  + Q+TG +Y  +  + V  RV+ DH R+++ LIADG++P+N
Sbjct: 236 LQGVDNLYEIDISRPVLDLAGQLTGRRYGADPADDVRLRVVADHSRTAAMLIADGVVPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  L  A+ T MG  YPEL+     I     +E
Sbjct: 296 EGRGYVLRRLLRRAVRDARLLGAREPVMSELFGAIGTAMGPIYPELVDNAETITGVAVAE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  + D  +  +       L GD AFKL+DT+G P+D+  ++    GL+ 
Sbjct: 356 EASFAETLRTGTTIFDAAVRQVRSTGAATLGGDEAFKLHDTYGFPIDLTLEMAAEAGLS- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + +E QR  A+A       G  +   +  +  + GAT F GY+ L        
Sbjct: 415 VDEAGFRRLMERQRQTAKADRAARRIGNVDLSAFRPILARSGATTFTGYEEL-------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                             S V  +V    G  +     G +V VV D TPFYAE+GGQ  
Sbjct: 467 ---------------SRESGVVGLVGIADGAGLTVVGEGDEVGVVLDATPFYAESGGQEP 511

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    DG  +++ DVQ+    + +H   V  G LR    +   +D   RR +S +H+A
Sbjct: 512 DFGLLRFDGGEVEVLDVQRPVPELVLHRVKVRSGELRLGDRVQAEVDENRRRAVSRSHTA 571

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H A    LG   +Q GS  +P  LRFD      +  + L  +ED +N++  ++LPV
Sbjct: 572 THLVHAAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLTDVEDEINEVALRDLPV 631

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              +  +E+A   GA AL G KY D VRVV     D G ++  LCGGTHV+S+ ++  + 
Sbjct: 632 RAFVTTQEEARRLGAMALFGEKYGDAVRVV-----DVGDYARELCGGTHVASSAQLGAVK 686

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++SESSI AG RR+E + G  A  +L  +   +  L++ LK     +  RV +I    R 
Sbjct: 687 LLSESSISAGTRRVEGLVGIDAFRYLAREHLLVSQLSTALKARPDELADRVTDIVGRLRD 746

Query: 770 LQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823
            +    + +                 +  V  ++  +       +++ +   ++ ++   
Sbjct: 747 AERELDRLRAAAVLAGAGALAEGAEDVGGVAVVTAEVPAGTSPDDVRLLAMDVRGRLAGR 806

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
             ++  +  +  + V++  +        A +L R S   L GG GGG+P +AQ GG N  
Sbjct: 807 PAVVAVVKADGSSIVVVTDSGARSAGLRAGELVRNSWASL-GGKGGGKPDIAQGGGGNSE 865

Query: 884 KADQAIAGVASFLKK 898
                 A +   + +
Sbjct: 866 MIPAVFAKLRGLVAE 880


>gi|205830106|sp|Q0RF65|SYA_FRAAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 881

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/915 (35%), Positives = 480/915 (52%), Gaps = 56/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR+ FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G     +   
Sbjct: 1   MDTAEIRSRFLNHFARRGHTIVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLATPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQK VR      D++NVGRT RH +FF+M GNFSFG YFK  AI  A++LL   F   
Sbjct: 60  TSVQKVVRTV----DIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELLVDGFGFK 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA  +W+++  L A++I R    DNFWSM   GPCGPCSEI+FD+G 
Sbjct: 116 PDDLWATVYLDDDEAEGIWREL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRGA 173

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236
              G   G   + ERY+E+WNLVFMQ+E+             LP  +IDTGMGLERMAT+
Sbjct: 174 AY-GREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPILRELPARNIDTGMGLERMATI 232

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++  + Q+TG +Y  +  + V  RV+ DH R+++ LIADG++P+N
Sbjct: 233 LQGVDNLYEIDISRPVLDLAGQLTGRRYGADPADDVRLRVVADHSRTAAMLIADGVVPSN 292

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  L  A+ T MG  YPEL+     I     +E
Sbjct: 293 EGRGYVLRRLLRRAVRDARLLGAREPVMSELFGAIGTAMGPIYPELVDNAETITGVAVAE 352

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  + D  +  +       L GD AFKL+DT+G P+D+  ++    GL+ 
Sbjct: 353 EASFAETLRTGTTIFDAAVRQVRSTGAATLGGDEAFKLHDTYGFPIDLTLEMAAEAGLS- 411

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + +E QR  A+A       G  +   +  +  + GAT F GY+ L        
Sbjct: 412 VDEAGFRRLMERQRQTAKADRAARRIGNVDLSAFRPILARSGATTFTGYEEL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                             S V  +V    G  +     G +V VV D TPFYAE+GGQ  
Sbjct: 464 ---------------SRESGVVGLVGIADGAGLTVVGEGDEVGVVLDATPFYAESGGQEP 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    DG  +++ DVQ+    + +H   V  G LR    +   +D   RR +S +H+A
Sbjct: 509 DFGLLRFDGGEVEVLDVQRPVPELVLHRVKVRSGELRLGDRVQAEVDENRRRAVSRSHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H A    LG   +Q GS  +P  LRFD      +  + L  +ED +N++  ++LPV
Sbjct: 569 THLVHAAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLTDVEDEINEVALRDLPV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              +  +E+A   GA AL G KY D VRVV     D G ++  LCGGTHV+S+ ++  + 
Sbjct: 629 RAFVTTQEEARRLGAMALFGEKYGDAVRVV-----DVGDYARELCGGTHVASSAQLGAVK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++SESSI AG RR+E + G  A  +L  +   +  L++ LK     +  RV +I    R 
Sbjct: 684 LLSESSISAGTRRVEGLVGIDAFRYLAREHLLVSQLSTALKARPDELADRVTDIVGRLRD 743

Query: 770 LQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823
            +    + +                 +  V  ++  +       +++ +   ++ ++   
Sbjct: 744 AERELDRLRAAAVLAGAGALAEGAEDVGGVAVVTAEVPAGTSPDDVRLLAMDVRGRLAGR 803

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
             ++  +  +  + V++  +        A +L R S   L GG GGG+P +AQ GG N  
Sbjct: 804 PAVVAVVKADGSSIVVVTDSGARSAGLRAGELVRNSWASL-GGKGGGKPDIAQGGGGNSE 862

Query: 884 KADQAIAGVASFLKK 898
                 A +   + +
Sbjct: 863 MIPAVFAKLRGLVAE 877


>gi|116627351|ref|YP_819970.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|122268047|sp|Q03LZ8|SYA_STRTD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116100628|gb|ABJ65774.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
          Length = 872

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/916 (35%), Positives = 495/916 (54%), Gaps = 68/916 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FDL + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDLPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEEFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ +   ++ +VI DH+RS +F I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L++L K   + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+ Y+    
Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL-YE---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  IV      +   SGQ   +VF+QTPFYAE G
Sbjct: 465 -------------------AETAESRLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G         +      ++A      H +   G L    +  L ID+  R ++ 
Sbjct: 505 GQVADHGTISDAAGTTVARVVDVQRAPNGQALHTVEVEGELVVGANYKLEIDHSRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G+H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +  PV T   + + A + GA AL G KY  RVRVVS+     G +S  LCGGTHV++T E
Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+T + A      +++ LKS+A+ LK  Q   V  +V  +
Sbjct: 680 IGMFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+   LQ  +A  K +              +   V +++  +   D+  L++  D  ++
Sbjct: 740 QEQLHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
              S +++L    +EK   ++   +E+     +A +L ++ A ++  G GGG+P+MA +G
Sbjct: 800 ADYSDVLVLAAHIREKVNVLVASKSEN----VHAGNLIKVLAPIVS-GRGGGKPNMAMAG 854

Query: 879 GPNGNKADQAIAGVAS 894
           G + N     ++ VA 
Sbjct: 855 GSDANSIQDLLSAVAE 870


>gi|163840721|ref|YP_001625126.1| alanyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|205830238|sp|A9WSC4|SYA_RENSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|162954197|gb|ABY23712.1| alanyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 896

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/928 (34%), Positives = 477/928 (51%), Gaps = 68/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +L+FF   GH ++PS+SLI   DP+++F  +GMVPF    +G+EK  Y   
Sbjct: 1   MKTQDIAQRWLDFFAAKGHTVVPSASLISA-DPSILFNIAGMVPFVPYLSGREKAPYDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D+D VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSVQKCIRTA----DIDEVGKTVRHGTFFQMCGNFSFGDYFKEGAITFAWELLTSSIADG 115

Query: 118 -FDLDQRRLYITVY----DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + LD  RL+ TVY    ++DEEA  +W+   G+  ++I      DNFWS  + GP GPC
Sbjct: 116 GYGLDPSRLWATVYVDGTEKDEEARAIWRDKIGIPEERIQGTGKADNFWSTGQPGPGGPC 175

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDT 226
           SEI++D G    G   G   +  RYIEIWNLVFMQ++      + +      LP  +IDT
Sbjct: 176 SEIYYDLGAKY-GQEGGPIVDETRYIEIWNLVFMQYQLSAVRSKTDFDIAGDLPNRNIDT 234

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVD 277
           G+GLER+A +LQ   N Y+ D  + ++ A+ ++ G  Y            + V  RV+ D
Sbjct: 235 GLGLERLAMILQGVENLYETDQVRPVLDAAAELAGKDYTSTVDPADPHHADDVRLRVVAD 294

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H+RS+  LIADG+ P+NEGRGYVLRR++RRA+   RL+G  +P +  LLP     M   Y
Sbjct: 295 HIRSALMLIADGVAPSNEGRGYVLRRLIRRAVRAMRLMGVEKPCLPALLPVSREAMKGFY 354

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGL 396
           P + +    I     +E++ F +T+  G   LD  ++    K++ L+G  AF L+DT+G 
Sbjct: 355 PAVEEDFERISRIAYAEEKSFLRTIASGTARLDEAVTESKAKNQPLSGAEAFALHDTYGF 414

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+  ++    GL  +D   F   + EQR RA+A S    SG  +   F+     G T 
Sbjct: 415 PIDLTLEMAAEAGL-AVDETGFRALMLEQRQRAQADSREKKSGHADLSAFNELLAQGQTV 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F GY  L G                        S ++ ++  G+ + +A  GQ++E+V  
Sbjct: 474 FTGYSELDG-----------------------ESAIRGLLSGGQPIAKASQGQEIELVLA 510

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +TPFYAEAGGQ  DTG   GDG  +++ DVQ+  + + VH AIV  G +    S+   +D
Sbjct: 511 ETPFYAEAGGQAADTGLISGDGFVIEVLDVQRPVKDLSVHKAIVREGEVAIGASVRAAVD 570

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R      H+ TH++H AL  ILG    Q GS      LRFD    + +++A    IE
Sbjct: 571 RERRHAAEQAHTGTHIVHAALHQILGPEALQRGSFNKAGYLRFDFAWGEGLSTATRSEIE 630

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N  I  N  V T  M  ++A A GA AL G  Y  RVRVV +     G  S  LCGG
Sbjct: 631 EVANIAIRNNYSVQTTEMPIDEAKALGAMALFGENYGSRVRVVEI----DGAWSRELCGG 686

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV +T  I  L ++ E S+  G RR+EA  G  A  HL  +   +  L   +KV    +
Sbjct: 687 THVDTTSRIGSLTLLGEQSVGYGNRRVEAFVGMDAFRHLAAERALVSELTEIMKVPSTQL 746

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV-DSKELK 810
             R+     + R  +    + +                ++     ++H + ++  + EL+
Sbjct: 747 ADRIGATLAKLRATEKELDRLRKAQLTAAAGELTTKAQQVGKTRLLTHDVGQIGGADELR 806

Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           S+   L++++ S   ++ L G S ++   ++            A  L +L+A VLGGGG 
Sbjct: 807 SLALDLRERLGSEAAVVALTGESNDRPMVLVATNEAARAAGVKAGALVKLAAGVLGGGG- 865

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG+  +AQ GG N  +   A+A +   +
Sbjct: 866 GGKDDVAQGGGSNVGQIPAALAAINQAV 893


>gi|300941066|ref|ZP_07155582.1| alanyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300454193|gb|EFK17686.1| alanyl-tRNA synthetase [Escherichia coli MS 21-1]
          Length = 784

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 491/820 (59%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|315289216|gb|EFU48614.1| alanyl-tRNA synthetase [Escherichia coli MS 110-3]
          Length = 784

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 493/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNESRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F+ A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFDAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|157115817|ref|XP_001658296.1| alanyl-tRNA synthetase [Aedes aegypti]
 gi|108883466|gb|EAT47691.1| alanyl-tRNA synthetase [Aedes aegypti]
          Length = 966

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/969 (30%), Positives = 456/969 (47%), Gaps = 90/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
               IR  FL+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      
Sbjct: 6   TAKQIRNAFLDFFKEKEHLYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSDMAK 65

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT  
Sbjct: 66  WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDR 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        + D E  ++W K+ G+  + I+  +  DNFW M ETGPC
Sbjct: 126 LKLPKDRLYVTYFGGHPESGLEPDLECREIWIKL-GVKEEHILPGSMKDNFWEMGETGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           + +    +EIWNLVF+QF ++      +LPK  ID GMG
Sbjct: 185 GPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREQDGSLKLLPKKHIDCGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
            ER+ +V+Q+K +NYD D+F  L +A ++           G        + +RV+ DH R
Sbjct: 244 FERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPSYQGRVGADDVDGVDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +PE
Sbjct: 304 TITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVDTVVFLLGDTFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I+  +  E+++F KTL RG  LL+  ++ LG  +++ GDVA++LYDT+G P+D
Sbjct: 364 VKKDPQNIKNIINEEEQQFLKTLTRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPID 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQF 457
           + Q +   + +  ID+  + +A  E    ++       +     +     L+EK   T  
Sbjct: 424 LTQLMAEEKNMT-IDMEGYEKAKHESYILSQGKEKSKAATVDLDVHAISELQEKKVPT-- 480

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                       K   K              +  V A+      V+E  +GQ+  V+ D+
Sbjct: 481 -------TDDSFKYRYKADVDPMAEYKFEPCNGKVLALRANNIFVDEVQAGQECAVILDK 533

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE+GGQ+ D G  +  G      +V      G ++ H  V  GILR    +   +D
Sbjct: 534 TNFYAESGGQIYDQGYLVKVGDESTEFNVNLVYNRGGYIIHIGVVEGILRVGDEVACHMD 593

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R+    NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +T  ++   E
Sbjct: 594 TLRRQLTMKNHSATHALNHSLLKVLGLDTDQRGSLVVPEKLRFDFTNKSAMTVEQVAESE 653

Query: 637 DNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684
               +++ +N+ +  +           G  ++    Y D VRV+S              E
Sbjct: 654 RLTREVVKKNMQIYAKESKLSVAKSIKGLRSVFDEVYPDPVRVISFGVPVENLEANPEGE 713

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           +G   S   CGGTH+  +G +    I +E +I  GIRRI A+TG  A   L   +     
Sbjct: 714 EGVETSVEFCGGTHLHQSGHMWDFVITTEEAIAKGIRRIVALTGPEALKALKKTELLENE 773

Query: 745 LASFLKVSQG---------NVVGRVEEIWEE-----------------YRKLQLIHAKRK 778
           L + LK +            +V ++ E+ E+                  + L+     ++
Sbjct: 774 L-NALKSTIEADKTGKDSKELVKKIVELNEDVSQAVIPYVKKDEIRNVLKSLKKTLDDKE 832

Query: 779 LQL---------NVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLV 828
                                  D  F+ H +   ++ K L S +  ++K       + V
Sbjct: 833 RAARAAVSTTVVEKAKELSESNKDAPFLVHRMEAYNNTKALDSALKEVRKINPEQSALFV 892

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
               + KK   L  V +  +++   A +     +  + GG GGG+P  AQ+ G N +K +
Sbjct: 893 SSDPDTKKIFCLASVPKSAVEKGLKANEWISHISPSM-GGKGGGKPESAQASGANFDKVE 951

Query: 887 QAIAGVASF 895
           + +     F
Sbjct: 952 EILELARQF 960


>gi|313157475|gb|EFR56894.1| alanine--tRNA ligase [Alistipes sp. HGB5]
          Length = 873

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/929 (33%), Positives = 473/929 (50%), Gaps = 95/929 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++PS+ ++   DPTLMFTN+GM  FK+IF G     Y   
Sbjct: 1   MESNKIRRAFLDFFESKGHVIVPSAPMVVKGDPTLMFTNAGMNQFKDIFLGNAPRKYPRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+S+G YFK+ AI+ AW+LL   + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSYGDYFKKEAIEWAWELLGGVYKLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y TV++         D+EA+  WK+   L  D IIR   +DNFW M ETGPCGPCS
Sbjct: 121 ADRMYATVFEGSEEDGVPFDQEAYDYWKQF--LPEDHIIRGNKHDNFWEMGETGPCGPCS 178

Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI FD  +        G    +    + IEIWNLVFMQF ++       LP  ++DTGMG
Sbjct: 179 EIHFDLRDEAEIAAKPGREMVNAGHPQVIEIWNLVFMQFNRKANGSLEPLPARNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+  +LQ K +NYD D+F+  IQ   Q++G  Y  +    V  RVI DHLR+ +F IA
Sbjct: 239 FERLCMILQGKKSNYDTDVFQPTIQRISQLSGKAYGADAKCDVAMRVIADHLRAIAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG+TEP +  L+P L  +MG  +PEL   + L
Sbjct: 299 DGQLPSNVKAGYVIRRILRRAVRYGYTYLGFTEPTICKLVPGLVEQMGEQFPELKAQQSL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +  E+  F +TL  G+ LLDGV+        E+++G  AF+LYDT G P+D+ + I
Sbjct: 359 IEKVIEEEEASFLRTLATGINLLDGVIEKTKGEGRELISGKDAFELYDTFGFPIDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              +G  G+D+ +F   L+ Q+ R+R           +   +        + F GYD L 
Sbjct: 419 AREQG-VGVDLAAFETELQAQKERSRNA------AAVDTDDWVELFPIRESLFTGYDTLT 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R+V  +                                 ++VFD+TPFY  +
Sbjct: 472 EQVRIARYRRVTSKGKTS----------------------------YQLVFDRTPFYGNS 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G       R+ +   +K+   I      +         ++V       R+  +
Sbjct: 504 GGQIGDIGYIENADERIAVVATEKENGLIIHIVKELPENPAAGFTAVVDAA---KRQSAA 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHL+H AL  +LG HV Q GS +TP+ LRFD +H + +T  EL+ +E  VN  + 
Sbjct: 561 NNHTATHLMHEALRKVLGQHVEQKGSMVTPEVLRFDFSHFQKMTPQELREVEMLVNRAVR 620

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            N P+   R   +E+A   GA  L G KY D+VR+V          S  LCGGTH S+TG
Sbjct: 621 ANYPLEENREATKEEAEKCGAMMLFGEKYGDKVRMVRFGS------SVELCGGTHTSATG 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I    I++ES+I AG+RRIEA+TG+RA   +   ++ ++ ++ +L      V+  V+++
Sbjct: 675 NIGFFKILNESAISAGVRRIEAVTGERAEQIIYAAEDTMRDISDYLHNP--QVLQAVKKM 732

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIA-----DVNFMSHIISEVDSKELKSVMDALQK 818
           +E    L       + +   +       +      V  ++   ++   + +K +   L+ 
Sbjct: 733 FESNEALSKEVETMRREQVAQWADKIIASTPERRGVQLIATQ-TDRTPEFVKDLAYCLRA 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM--- 874
           +    ++++ G   + K  + +++ E++     NA  + R +AK+           M   
Sbjct: 792 RAPK-LVLVQGSVNDGKPMLTVMLGEEITAQGVNAGAVVREAAKL-----------MQGG 839

Query: 875 -------AQSGGPNGNKADQAIAGVASFL 896
                  A +GG N +    AI      +
Sbjct: 840 GGGQAFFATAGGKNPDGLQAAIDKAVELI 868


>gi|256844557|ref|ZP_05550043.1| alanyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256613635|gb|EEU18838.1| alanyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
          Length = 879

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/919 (34%), Positives = 487/919 (52%), Gaps = 62/919 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT   
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLPKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I  +E++T   KY     +    ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAVSFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +   
Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  +  Q+ RAR     L S   + +  +L      + F         
Sbjct: 413 DAGLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           D      + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 461 --------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL +D + R  L  
Sbjct: 506 QVADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKGQEYVLKLDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN  I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +T +I
Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K     N+V +++ + 
Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +    Q        ++N            +  D+  ++         +L+ + D  +  
Sbjct: 741 SDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSG 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +S +++L   +  K   ++ +  + L     A +L +++A + GGGG GGRP+MAQ+GG
Sbjct: 801 NKSDVLVLAAENAGKANMIIALGQKALDKALKAGNLIKIAAPIFGGGG-GGRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFLKK 898
            N    + AI  V   + K
Sbjct: 860 KNPAGLNDAIKAVIDEISK 878


>gi|313648345|gb|EFS12789.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
          Length = 784

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   ID   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADIDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IMN E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMNLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|332087414|gb|EGI92542.1| alanyl-tRNA synthetase [Shigella boydii 5216-82]
          Length = 784

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 491/820 (59%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM  E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMALEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|302801948|ref|XP_002982730.1| hypothetical protein SELMODRAFT_116848 [Selaginella moellendorffii]
 gi|300149829|gb|EFJ16483.1| hypothetical protein SELMODRAFT_116848 [Selaginella moellendorffii]
          Length = 934

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/941 (33%), Positives = 487/941 (51%), Gaps = 86/941 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ--------- 53
           +  +IR TFL FF   GH LLP SSL+P +DPT++ T +GM+ FK IF GQ         
Sbjct: 23  SGDAIRRTFLNFFAARGHHLLPGSSLVP-DDPTVLLTIAGMLQFKPIFLGQATTLDSVLL 81

Query: 54  ----EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQL 109
                   +    T QKC+R     ND++NVGRT+RHHTFFEMLGNFSFG YFK  AI+ 
Sbjct: 82  SRAQVPRRFACAVTSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKHDAIRW 137

Query: 110 AWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           AW+L T E+ L   R++++VY +D+EA  +W+   G+  ++I ++   DNFW+   TGPC
Sbjct: 138 AWELATSEYKLPAARVWVSVYKDDDEALAIWRDHVGIPEERIKKLGEEDNFWASGPTGPC 197

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE++FD              +  R++E +NLVFMQ+ + +  +  +L + +IDTG+G
Sbjct: 198 GPCSEMYFDFHPERGTDDAVDLGDDTRFLEFYNLVFMQYNRNDDGKLELLKQKNIDTGLG 257

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLI 286
           LERMA +LQ+  NNY+ DL   +IQ + ++ G+ Y   +       +VI DH R+  +LI
Sbjct: 258 LERMARILQKVPNNYETDLIYPIIQRASELAGVNYTAADDRTKTYLKVIGDHSRAVVYLI 317

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYP 338
           +DG+ P+N GRGY++RR++RR +   RLLG             +  L   + +   +  P
Sbjct: 318 SDGVTPSNIGRGYIVRRLIRRIVRMGRLLGIRGDGEGNSEGTFLPSLAKVVVSMSSNVDP 377

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--------GKDEILNGDVAFKL 390
           ++ Q    I E L  E+ RF +TL+RG  LL   L               +L+G   F L
Sbjct: 378 DVKQNAGRIFEELDKEELRFVQTLERGEKLLSQKLEEAAAACRRDGSAKPVLSGKDVFML 437

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS--LGLGSGTTEKIWFSL 448
           YDT+G P++I +++        +D+  F   +E QR +++     + L +G T     SL
Sbjct: 438 YDTYGFPVEITEEVAGE-NDVQVDMAGFETEMEYQRRQSQEAHNVVKLSAGGTAAELTSL 496

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
            E    T+F+GY  L                          + V+A++ +G +V E   G
Sbjct: 497 VE----TKFVGYTTLESI-----------------------AEVRALIARGGLVTEVREG 529

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR----LQITDVQKKAEGIFVHHAIVERGI 564
            +VE+V D TPFYAE+GGQ+GD G  +  G      +Q+ DVQK    + +H  IV++G 
Sbjct: 530 DEVEIVLDTTPFYAESGGQIGDNGLLVCRGGETDCIVQVKDVQKLGSNLIIHKGIVQQGT 589

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +    ++   ++   RR+    H+ATHLL  AL  +LGS  SQ GS +  D LRFD T S
Sbjct: 590 MAVGNNVQALVESSLRRRAQAQHTATHLLQAALKKVLGSETSQAGSLVAFDRLRFDFTLS 649

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +   E+  +E  VN+ I+  +P+  ++M   +A  SGA A+ G KY ++VRVV V   
Sbjct: 650 RKMAEEEVVQVEALVNEWISMAVPLEWKVMPLAEAKNSGAIAMFGEKYGEQVRVVDVPG- 708

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S  LCGGTHVS+T EI    IV    I +G++RIEA+ G     H+  ++  L+ 
Sbjct: 709 ----ISKELCGGTHVSNTSEIRGFKIVLVEGIASGVKRIEAVAGDAFIDHIFARENALRQ 764

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-------IADVNFM 797
           + S LK    ++  R+  + +E + L+      + ++ + +               V  +
Sbjct: 765 ICSSLKAKPEDLPARISGLQDELKALKSDATSLRAKVAIAEADVLTGRALLVGPGGVRIL 824

Query: 798 SHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDL 855
              +   D   L++ ++            +L   +++ K S++   +  ++     A   
Sbjct: 825 VGALETTDVDSLRAAVEHCVALHGDPSATLLGACTEDGKVSLVAAFSPSVVKHGLKAGAF 884

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               AK+ GGGG GGRP  AQ+GG   +K   AI    + L
Sbjct: 885 VGSVAKLCGGGG-GGRPDFAQAGGKLPDKLPGAIEKAKADL 924


>gi|94988809|ref|YP_596910.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94992695|ref|YP_600794.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|205830223|sp|Q1JB08|SYA_STRPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830224|sp|Q1JL53|SYA_STRPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94542317|gb|ABF32366.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94546203|gb|ABF36250.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 872

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 490/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y  + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++    I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKHDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  +
Sbjct: 855 GSDASKIAELLAAVAETV 872


>gi|332088620|gb|EGI93733.1| alanyl-tRNA synthetase [Shigella dysenteriae 155-74]
          Length = 784

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|302823356|ref|XP_002993331.1| hypothetical protein SELMODRAFT_136926 [Selaginella moellendorffii]
 gi|300138840|gb|EFJ05593.1| hypothetical protein SELMODRAFT_136926 [Selaginella moellendorffii]
          Length = 920

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/941 (33%), Positives = 489/941 (51%), Gaps = 87/941 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ--------- 53
           +  +IR TFL FF   GH+LLP SSL+P +DPT++ T +GM+ FK IF GQ         
Sbjct: 10  SGDAIRRTFLNFFAARGHQLLPGSSLVP-DDPTVLLTIAGMLQFKPIFLGQATTLDNVLL 68

Query: 54  ----EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQL 109
                   +    T QKC+R     ND++NVGRT+RHHTFFEMLGNFSFG YFK  AI+ 
Sbjct: 69  SRAQVPRRFACAVTSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKHDAIRW 124

Query: 110 AWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           AW+L T E+ L   R++++VY +D+EA  +W+   G+  ++I ++   DNFW+   TGPC
Sbjct: 125 AWELATSEYKLPAARVWVSVYKDDDEALAIWRDHVGIPEERIKKLGEEDNFWASGPTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE++FD      G       +  R++E +NLVFMQ+ + +  +  +L + +IDTG+G
Sbjct: 185 GPCSEMYFDFHPE-RGTDDADLGDDTRFLEFYNLVFMQYNRNDDGKLELLKQKNIDTGLG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLI 286
           LERMA +LQ+  NNY+ DL   +IQ + ++ G+ Y   +       +VI DH R+  +LI
Sbjct: 244 LERMARILQKVPNNYETDLIYPIIQRASELAGVNYTAADDRTKTYLKVIGDHSRAVVYLI 303

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYP 338
           +DG+ P+N GRGY++RR++RR +   RLLG             +  L   + +   +  P
Sbjct: 304 SDGVTPSNIGRGYIVRRLIRRIVRMGRLLGIRGDGEGNSEGTFLPSLAKVVISMSSNVDP 363

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--------GKDEILNGDVAFKL 390
           ++ Q    I E L  E+ RF +TL+RG  LL   L               +L+G   F L
Sbjct: 364 DVKQNAGRIFEELEKEELRFVQTLERGEKLLSQKLEEAAAACRRDGSTKPVLSGKDVFML 423

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS--LGLGSGTTEKIWFSL 448
           YDT+G P++I +++        +D+  F   +E QR +++     + L +G T     SL
Sbjct: 424 YDTYGFPVEITEEVAGE-NDVQVDMAGFETEMEYQRRQSQEAHNVVKLSAGGTAAELTSL 482

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
            E    T+F+GY  L                          + V+A++ +G +V E   G
Sbjct: 483 VE----TKFVGYTTLESI-----------------------AEVRALIARGGLVTEVREG 515

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR----LQITDVQKKAEGIFVHHAIVERGI 564
            +VE+V D TPFYAE+GGQ+GD G  +  G      +Q+ DVQK    + +H  IV++G 
Sbjct: 516 DEVEIVLDTTPFYAESGGQIGDNGLLVCRGGETDCIVQVKDVQKLGSNLIIHKGIVQQGT 575

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +    ++   ++   RR+    H+ATHLL  AL  +LGS  SQ GS +  D LRFD T S
Sbjct: 576 MAVGNNVQALVESSLRRRAQAQHTATHLLQAALKKVLGSETSQAGSLVAFDRLRFDFTLS 635

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +   E+  +E  VN+ I+  +P+  ++M   +A  SGA A+ G KY ++VRVV V   
Sbjct: 636 RKMAEEEVVQVEALVNEWISMAVPLEWKVMPLAEAKNSGAIAMFGEKYGEQVRVVDVPG- 694

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S  LCGGTHVS+T EI    IV    I +G++RIEA+ G     H+  ++  L+ 
Sbjct: 695 ----ISKELCGGTHVSNTSEIRGFKIVLVEGIASGVKRIEAVAGNAFIDHIFARENALRQ 750

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-------IADVNFM 797
           + S LK    ++  R+  + +E + L+      + ++ + +               V  +
Sbjct: 751 ICSSLKAKPEDLPARISGLQDELKALKSEATSLRAKVAIAEADVLTGRALLVGPGGVRIL 810

Query: 798 SHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDL 855
              +   D   L++ ++            +L   +++ K S++   +  ++     A   
Sbjct: 811 VGALETTDVDSLRAAVEHCVALHGDPSATLLGACTEDGKVSLVAAFSPSVVKHGLKAGAF 870

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               AK+ GGGG GGRP  AQ+GG   +K   AI    + L
Sbjct: 871 VGSVAKLCGGGG-GGRPDFAQAGGKLPDKLPGAIEKAKADL 910


>gi|50914453|ref|YP_060425.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|59798488|sp|Q5XBH1|SYA_STRP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50903527|gb|AAT87242.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 872

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++++++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELIEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  +
Sbjct: 855 GSDASKIAELLAAVAETV 872


>gi|300820470|ref|ZP_07100621.1| alanyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300906808|ref|ZP_07124489.1| alanyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300924257|ref|ZP_07140242.1| alanyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|301305420|ref|ZP_07211514.1| alanyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|301326280|ref|ZP_07219656.1| alanyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|309795155|ref|ZP_07689574.1| alanyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|300401409|gb|EFJ84947.1| alanyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300419533|gb|EFK02844.1| alanyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300526734|gb|EFK47803.1| alanyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300839340|gb|EFK67100.1| alanyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|300847020|gb|EFK74780.1| alanyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|308121126|gb|EFO58388.1| alanyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|315254472|gb|EFU34440.1| alanyl-tRNA synthetase [Escherichia coli MS 85-1]
 gi|323154906|gb|EFZ41098.1| alanyl-tRNA synthetase [Escherichia coli EPECa14]
 gi|323159803|gb|EFZ45775.1| alanyl-tRNA synthetase [Escherichia coli E128010]
 gi|323167133|gb|EFZ52851.1| alanyl-tRNA synthetase [Shigella sonnei 53G]
 gi|323183219|gb|EFZ68616.1| alanyl-tRNA synthetase [Escherichia coli 1357]
 gi|324017048|gb|EGB86267.1| alanyl-tRNA synthetase [Escherichia coli MS 117-3]
          Length = 784

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 492/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|225010000|ref|ZP_03700472.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
 gi|225005479|gb|EEG43429.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
          Length = 879

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/926 (36%), Positives = 489/926 (52%), Gaps = 80/926 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL FF+   H+++PSS ++  +DPTLMFTN+GM PFK  F G   P  Q V
Sbjct: 1   MKSQDIRAQFLAFFKDKNHQIVPSSPMVIKDDPTLMFTNAGMNPFKPYFLGNTLPKNQRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-------GYFKERAIQLAWDLL 114
              QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG       GYFK+ AIQ AW LL
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGVAKNNVDGYFKQEAIQWAWSLL 120

Query: 115 TKEFDLDQRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
              F +D   LY+TV++          D EA  LWK I  +   +I+     DNFW M +
Sbjct: 121 VDVFKIDPNSLYVTVFEGSKDADQLEMDAEALSLWKAI--VPESQILFGNKKDNFWEMGD 178

Query: 166 TGPCGPCSEIFFD-QGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
            GPCGPCSEI  D +         G    + +  + +EIWNLVFMQF ++       LP 
Sbjct: 179 QGPCGPCSEIHVDIRTPEEKASVSGASLVNMDHPQVVEIWNLVFMQFNRKANGILEPLPA 238

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
             +DTGMG ER+  VLQ   +NYD D+F  +I+  E ++G  Y  +    +  RVI DH+
Sbjct: 239 KHVDTGMGFERLCMVLQGVQSNYDTDVFTPIIKEIEVISGHSYGKDTPTDIAIRVIADHI 298

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +F IADG LP+N G GYV+RRI+RRA+ Y    L   EP M  L+  L   MG A+P
Sbjct: 299 RAVAFSIADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMFKLVQVLSKTMGDAFP 358

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL   K LI+  ++ E++ F +TL++GL LLD ++     D++L G+ AF+LYDT+G P+
Sbjct: 359 ELNSQKQLIQNVIKEEEQSFLRTLEQGLQLLDTLILTAK-DKVLAGEKAFELYDTYGFPI 417

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   IL  RG   +D   F ++++ Q+ R+RA      S  +++ W  L E     +FI
Sbjct: 418 DLTALILSERGY-ALDQSGFEKSMQVQKQRSRAA-----SEVSKEDWEVLLED-DTQEFI 470

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GYDLL     + + RK                           V     G+  ++VF+ T
Sbjct: 471 GYDLLETQVKIAKYRK---------------------------VTSKKEGEMYQLVFNLT 503

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFY E GGQ+GD G        +      KK     +H +          +S   ++D +
Sbjct: 504 PFYPEGGGQVGDKGYLEAPNGDVTYIVDTKKENNEIIHFS--STLPKDPRVSFKASVDKK 561

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R + S NH+ATHLLH AL  ILG+HV+Q GS +    LRFD +H   +TS +LK IED 
Sbjct: 562 QRDRTSKNHTATHLLHQALRAILGTHVAQKGSAVHSKYLRFDFSHFSKVTSEQLKEIEDY 621

Query: 639 VNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           VN  I  ++P+   R      A A GA AL G KY D VR +         HS  LCGGT
Sbjct: 622 VNARIDGHIPLEEHRNRPLVQAQADGAMALFGEKYGDTVRSIRFG------HSIELCGGT 675

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV +TG+I    I  ES++ +GIRRIEAIT    + + +  D+ L+ + + L+++   V 
Sbjct: 676 HVKNTGDIWQFKITGESAVASGIRRIEAITSDAVKDYYLKTDQTLQQVLNQLQINTDPV- 734

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSV 812
             + ++ EE+ +L+      + +   +       S  +I  V F++  +S +D+  +K +
Sbjct: 735 TAITKLQEEFAQLKTTLTALQKEKAGDVGKSLAASFEEINGVRFLAAEVS-LDASAMKDL 793

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGG 870
              L  +  +   +L+G   E KA +   ++++LL     NA  + +   + + GGG GG
Sbjct: 794 CFELAAQSPNT-FLLLGAQYEGKALLACYISKELLTEKSLNAGQVVKTLGQYIQGGG-GG 851

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P  A +GG N     +AIA    F+
Sbjct: 852 QPFFATAGGKNPEGIAEAIAHAKDFI 877


>gi|71903788|ref|YP_280591.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|83305861|sp|Q48SS4|SYA_STRPM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71802883|gb|AAX72236.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 872

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 491/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y  + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  +
Sbjct: 855 GSDASKIAELLAAVAETV 872


>gi|293400450|ref|ZP_06644595.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305476|gb|EFE46720.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 893

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/916 (36%), Positives = 499/916 (54%), Gaps = 63/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  + IR  FL++F+K+GH + P +SLIP NDPTL++ N+G+   K  F G  KP  
Sbjct: 20  MKNLTGNQIRQLFLDYFKKHGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGTVKPEC 79

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT E 
Sbjct: 80  PRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHFAWEFLTSEE 135

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ RLYITVY +DEEA+ +W    G+    I++  T DNFW + E GPCGP +EIF
Sbjct: 136 YIGFDKDRLYITVYIDDEEAYDIWTNEIGVDPSHILK--TADNFWQIGE-GPCGPDTEIF 192

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           +D+GE                E +RYIE+WN VF QF+ +     ++   LP+ +IDTGM
Sbjct: 193 YDRGEAYDPEGLGEKLFFEEMENDRYIEVWNNVFSQFDAKEGVARKDYKELPQKNIDTGM 252

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-NNIVNHRVIVDHLRSSSFLIA 287
           GLER+  ++Q    N+D DLF  LI A EQ T M+YE   N +  RVI DH+R+ +F +A
Sbjct: 253 GLERLTCLVQNGETNFDTDLFLPLIHACEQYTSMRYEDAENKMAFRVIADHIRTVTFALA 312

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG L ANEGRGYVLRR++RRA+ + R L      M  L+P +   M   YP + +    I
Sbjct: 313 DGALFANEGRGYVLRRVLRRAVRFGRKLKIEGAFMYKLVPVVYEIMKDFYPYIEEKIDYI 372

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E+ +++E+ERF  TL  G  LL  V+     +++L+G  AFKLYDT+G PL++  +I   
Sbjct: 373 EKLVKAEEERFHATLADGEKLLLDVMEKNKDNKLLDGVTAFKLYDTYGFPLELTCEIAEE 432

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G   +D+  F++ +++QR RAR     + S +++     L      ++FIGYD      
Sbjct: 433 SGY-QVDVQGFDEEMKKQRERARNAREDVESMSSQSA--DLMAFTQDSKFIGYDE----- 484

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 + V A+ + G+ V+      + +++ + T FYAE+GGQ
Sbjct: 485 ------------------RTCDAQVIALFKDGKQVDAIS--DEGDIILNTTVFYAESGGQ 524

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G  +G     +I +  K      +H  ++E G L     L L +D + R  ++ NH
Sbjct: 525 IGDSGSFMG-DALGRIVNTVKAPHKQHLHKVVIEEGCLHVGSKLQLAVDNKKRDIITSNH 583

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  AL  ++G+H+ Q GS ++ + LRFD TH + ++  +LK IE  VN  I+++ 
Sbjct: 584 SCTHLLQSALKKVVGNHIQQAGSFVSDEYLRFDFTHFEKVSVQQLKEIEQLVNRFISEHH 643

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV    M  E+A  SGA AL   KY D VRVV++     G  S   CGG HV++T EI +
Sbjct: 644 PVSKVEMPIEEAKQSGATALFDEKYGDVVRVVTM-----GDVSKEFCGGCHVNNTQEIGI 698

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766
             I+SE SI +GIRRI A TG  A      +++ L+ +A  LK+    NV  +VE++  E
Sbjct: 699 CKIISEESIGSGIRRITAKTGYSAYEEFAAEEKTLRHIADDLKMKSIVNVDTKVEQVLHE 758

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             +L+   A  + ++             +    + +   +   D+  LK +   ++ + +
Sbjct: 759 NAQLKKELAALQSEMFTLKANELIHEVKECNGRHVLIKRMDGADANALKDIASTIKAQ-K 817

Query: 822 SGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
             +I+ +      K   +    +  + D     DL + +A +L  G GGGR  +AQ+GG 
Sbjct: 818 EHVIVFLASVCNDKVVFVAGADKLAVADGIKCGDLVKEAA-MLCDGKGGGRADLAQAGGK 876

Query: 881 NGNKADQAIAGVASFL 896
           +  K D+A+  + + L
Sbjct: 877 DVTKVDEAVEFIKNKL 892


>gi|309786227|ref|ZP_07680855.1| alanyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|308925972|gb|EFP71451.1| alanyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 784

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/820 (41%), Positives = 491/820 (59%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ   VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQDAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|195397897|ref|XP_002057564.1| GJ18196 [Drosophila virilis]
 gi|194141218|gb|EDW57637.1| GJ18196 [Drosophila virilis]
          Length = 967

 Score =  725 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/973 (30%), Positives = 455/973 (46%), Gaps = 86/973 (8%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           M       +R T+L FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P  
Sbjct: 1   MKFLTAKEVRDTYLNFFKEKQHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 61  EMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWEF 120

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT   +L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M E
Sbjct: 121 LTVRLNLPKDRLYVTYFGGDVASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSE+ FD+           +++    +EIWNLVF+Q+ +++      LPK  ID
Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNQDDPDVLEIWNLVFIQYNRESDGSLKPLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276
            GMG ER+ +V+Q K +NYD DLF  L  A +            G        + +RV+ 
Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDADGIDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 299 DHARTITIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVELLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTH 394
           A+PE+ +    I + +  E+ +F KTL RG  LL+  +  L      + GDVA++LYDT+
Sbjct: 359 AFPEVKKDPQQIMDIINEEELQFLKTLTRGRNLLNRTIEKLGANQTTIPGDVAWRLYDTY 418

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ Q +   +      +       +  +  +   S G G+   E+I   +      
Sbjct: 419 GFPVDLTQLMAEEKS-----LQIDMAGYDAAKQNSYILSQGKGASKIEEINLDVHAISQL 473

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
            +  G        F  +   V  ++      +  +S + A+  + + V+E  SGQK  +V
Sbjct: 474 QE-QG-VPPTNDSFKYKYEAVSNERDSAYNYSECTSKIVALRYENKFVQEISSGQKAGIV 531

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE+GGQ+ D G  +            +    G ++ H  V  G L     + L
Sbjct: 532 LDKTNFYAESGGQIYDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVEGTLAVGDEVQL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++ 
Sbjct: 592 HIDAERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVA 651

Query: 634 SIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682
             E    D++ +N+P+  +           G  ++    Y D VRV+S            
Sbjct: 652 KTEQLTRDMVYKNMPIYAKESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDQLEAQP 711

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             E G   S   CGGTH+ ++G IM   I SE +I  GIRRI A+TG  A   L   +  
Sbjct: 712 DAEAGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAF 771

Query: 742 LKSLASFL------KVSQG------NVVGRVEEI---------WEEYRKLQLIHAK---- 776
            + ++         K  +        +V   E+I          +E R L     K    
Sbjct: 772 QQEISKLQATIEADKTGKDSKLYVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKTLDD 831

Query: 777 --RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826
             R L+  V      +           N +   +   ++ K L + +  ++ ++     M
Sbjct: 832 KERALRAAVSVTVVERAKALCEANPQANVLVQQLEAYNNTKALDAALKQVRSQLPDAAAM 891

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            V +  + KK   L  V +  +++   A +  +  + VL GG GGG+P  AQ+ G N  +
Sbjct: 892 FVSVDADSKKIFCLCSVPKSAVEKGLKANEWVQHVSPVL-GGKGGGKPESAQASGSNFER 950

Query: 885 ADQAIAGVASFLK 897
            D+ +     F +
Sbjct: 951 VDEIVQLARKFAQ 963


>gi|209559623|ref|YP_002286095.1| alanyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|209540824|gb|ACI61400.1| Alanyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 872

 Score =  725 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  +
Sbjct: 855 GSDASKIAELLAAVAETV 872


>gi|119716634|ref|YP_923599.1| alanyl-tRNA synthetase [Nocardioides sp. JS614]
 gi|205830163|sp|A1SJC7|SYA_NOCSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119537295|gb|ABL81912.1| alanyl-tRNA synthetase [Nocardioides sp. JS614]
          Length = 896

 Score =  725 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/926 (35%), Positives = 515/926 (55%), Gaps = 67/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKN----GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
            + + IR  F+  F+ N     H  +PS+SL+  +DP L+F N+GMVPFK  F GQE P 
Sbjct: 1   MDTAEIRRRFVAHFEHNTTVGAHTPVPSASLL-LDDPNLLFVNAGMVPFKPYFLGQEAPP 59

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           Y   T+VQKCVR      D+++VG+T RH TFFEM GNFSFG YFKE AI+LAWDL+T+ 
Sbjct: 60  YPRATSVQKCVRT----PDIEDVGKTTRHGTFFEMCGNFSFGDYFKEGAIELAWDLVTRP 115

Query: 118 F-----DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
                  L++ +LY +VY++D EA  LWKK++GL  ++IIR+   +N+WSM   GP GPC
Sbjct: 116 LADGGWGLEESKLYPSVYEDDPEAVALWKKVTGLPEERIIRLGKRENYWSMGVPGPGGPC 175

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDT 226
           SEI +D+G           +  +RY+EIWNLVFMQ E      +++      LPK +IDT
Sbjct: 176 SEILYDRGPDYGPDGDFGPKGEDRYLEIWNLVFMQDELSAVRSKEDFDIAGSLPKKNIDT 235

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLER+A +LQ K N Y+ID+   +IQ +E++TG +Y  + ++ V  RV+ DH+RSS  
Sbjct: 236 GMGLERVAFLLQGKANMYEIDVMFPVIQKAEELTGRRYGADHDDDVRFRVVADHVRSSMM 295

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NE RGYVLRR++RRA+   RLLGY +P +  L P    +MG  Y  L +  
Sbjct: 296 LIGDGVTPGNEARGYVLRRLLRRAVRSMRLLGYEDPALPELFPISRDKMGETYTALHRDW 355

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQ 402
             I     +E+  F +TL  G  + D   + L +     L+GD AF L+DT+G P+D+  
Sbjct: 356 ERISTVAYAEEHAFRQTLRSGTTIFDQATAELKQAGGSQLSGDKAFALHDTYGFPIDLTL 415

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYG-ATQFIGY 460
           ++   +GL  +D + F + + EQR RA+  +        +   +  + +  G   +F GY
Sbjct: 416 EMAAEQGL-AVDEVGFRRLMNEQRQRAKDDAKAKKGQHRDASAYRQVADSLGRPVEFTGY 474

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D++                          + V+ +V  G +V  A  G  VE++ D+TPF
Sbjct: 475 DVVTD-----------------------EASVRGLVAAGGVVSSAGPGDDVEIILDRTPF 511

Query: 521 YAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           YAE GGQL D G    D   R+++ DVQ    G+ VHHA V  G +   +     +D + 
Sbjct: 512 YAEGGGQLADQGVIELDNGARVEVRDVQSPVRGLIVHHATVLSGEVSIGLGAHALVDVER 571

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR +S +H+ATH++H A    LG   +Q GS  +P   RFD +    +  + +  +E  V
Sbjct: 572 RRSISRSHTATHMVHKAFREALGETATQAGSENSPGRFRFDFSAVGAVPESVMADVEARV 631

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+++  +L V   +M++ DA+ SGA AL G KY DRVRVVSV     G  +  LCGGTH 
Sbjct: 632 NEVVLDDLAVHAEVMSQADAVKSGAMALFGEKYGDRVRVVSV-----GDWARELCGGTHA 686

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            S+G++ ++ ++ ESSI +G+RR+EA+ G  A   L  +   +  L+  LKV    +  R
Sbjct: 687 GSSGKLGVVKLLGESSIGSGVRRVEALVGSDAYRFLAREHVLVAQLSDTLKVRPEQLPER 746

Query: 760 VEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
           V ++ E+ R+ +    + ++               K+  VN ++H        +++++  
Sbjct: 747 VHDLVEKLREAEKEIERVRVGQLLAAAGELAAGAAKVGPVNLVAHRADGAGGGDVRTLAL 806

Query: 815 ALQKKIQ---SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870
            ++ ++     G+++++G   + K +V+  + ++   R  +A +L R    ++GG G GG
Sbjct: 807 DVRGRLPQGEPGVVVVIGAV-DGKVAVVAALNDEARARGLSANELVRAVGPLVGGKG-GG 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  +AQ GG + ++ D+AI  V + +
Sbjct: 865 KDDVAQGGGTDASRIDEAITLVTAEV 890


>gi|319744847|gb|EFV97185.1| alanine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 872

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 489/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y  +   ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGENMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKSEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTESVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVSVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  + + K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  L
Sbjct: 855 GSDASKIAELLAAVAENL 872


>gi|300725879|ref|ZP_07059342.1| alanine--tRNA ligase [Prevotella bryantii B14]
 gi|299776816|gb|EFI73363.1| alanine--tRNA ligase [Prevotella bryantii B14]
          Length = 888

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/937 (33%), Positives = 483/937 (51%), Gaps = 90/937 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L++F+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKYFESKGHVIVPSAPIVVKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
               QKC+R  GKHNDL+ VGR +   HHT FEMLGN+SFG YFKE AI +A++ L    
Sbjct: 61  RADTQKCLRVSGKHNDLEEVGRDSALSHHTMFEMLGNWSFGDYFKEGAIDMAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++         D+EA K W+K      + I+    +DNFW M + GPCG
Sbjct: 121 KLDPKDLYVTVFEGDEAENLERDDEAAKFWEK--HFPKNHIVNGNKHDNFWEMGDQGPCG 178

Query: 171 PCSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PC+EI  D           G    +++  + IEIWN VFMQ+ ++       L    IDT
Sbjct: 179 PCTEIHIDFRSEEEKAKVPGEELVNKDHPKVIEIWNNVFMQYNRKADGTLEPLKMQVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVN 271
           GMG ER+  ++Q K +NYD D+F  +I   E+++G KY                    + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPIIDEIERISGKKYNHTFPEGDNGEGINEEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L 
Sbjct: 299 IRVVADHLRAVAFAIADGQLPSNAKAGYVIRRILRRAVRYYYTFLDQKEAFMFKLLPTLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAF 388
            EMG AYPEL   + LI   ++ E++ F +TL++G+ LL+G +          L+G  AF
Sbjct: 359 AEMGGAYPELKAQQELIGRVMKEEEDSFLRTLEKGINLLNGDMETLKANGKTELDGASAF 418

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + I    G   +D   FN+ + +Q++RAR       +      W  +
Sbjct: 419 RLFDTYGFPLDLTELICTENGYT-VDEKGFNEEMAKQKARARNA-----AAVENGDWQVI 472

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           KE  G  +F+GYD       +   R+V  +K                             
Sbjct: 473 KE--GEQEFVGYDYSEYPCHILRYRQVTQKKNTF-------------------------- 504

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   + +TD +++          V++      
Sbjct: 505 --YELVLDHTPFYGEMGGQVGDCGTLVSENETVTVTDTKRENNQSIHI---VKKLPEDLN 559

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  +D   R   + NH+ATHLL +AL  +LG HV Q GS +    LRFD +H + +T
Sbjct: 560 AEFMACVDLDKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDDKVLRFDFSHFQKVT 619

Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             E++ +E  VN +I Q+LP+   R    E+A   GA AL G KY D+VRVV        
Sbjct: 620 DEEIRQVERIVNAMIRQDLPLDEHRDTPIEEAKELGAIALFGEKYGDKVRVVRFGP---- 675

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S+  CGG H  STG I    I+SESS+ AG+RRIEA+TG+     L    + L  + S
Sbjct: 676 --SAEFCGGIHAQSTGRIGFFKIISESSVAAGVRRIEALTGKACEETLYTLQDTLSDVKS 733

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIIS 802
               +  ++   +++  +E+  ++    K + Q+     N       +I  V  +  ++ 
Sbjct: 734 LFN-NAKDLHAVIQKYIDEHDAMKKEVEKFQAQMVERTKNDLVSKAQEINGVKVVKAVLP 792

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSA 860
            ++    K ++  +++ I   ++ ++G +   K  + ++ ++D++     NA  + R +A
Sbjct: 793 -LEPNAAKDLVFKIREAIPENLVAVIGSTSNDKPMLSVMFSDDMVKNHDLNAGKMIREAA 851

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           K++ GG GGG+PH AQ+GG +      A+  +     
Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDVEGIHAAVDKIIELAN 887


>gi|94994635|ref|YP_602733.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|205830226|sp|Q1J5Z4|SYA_STRPF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94548143|gb|ABF38189.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 872

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/918 (34%), Positives = 490/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y  + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  +
Sbjct: 855 GSDASKIAELLAAVAETV 872


>gi|94986300|ref|YP_605664.1| alanyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|205830044|sp|Q1IW89|SYA_DEIGD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94556581|gb|ABF46495.1| alanyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 885

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/915 (36%), Positives = 490/915 (53%), Gaps = 61/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ--EKPVY-- 58
             + IR  FL FF+  GH  LPS SLI   DPT +FT +GM PFK  F G   + P Y  
Sbjct: 6   TTAEIREKFLSFFESKGHLRLPSHSLIAP-DPTTLFTVAGMQPFKPQFMGAPAKFPGYGE 64

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
            + VTT QKC+R G    D++NVGRT RH + FEM+GNFSFG YFK  AI  AW+ LT  
Sbjct: 65  NRRVTTAQKCIRVG----DIENVGRTRRHLSLFEMMGNFSFGDYFKREAILWAWEFLTSP 120

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCG 170
           +   +D  R+Y+T+Y++D EAF  W +  GL  D I R   ++NFW          GPCG
Sbjct: 121 EWLGMDPARMYVTIYEDDNEAFGYWTQDVGLPEDHIHRFGADENFWPADAPAKGPNGPCG 180

Query: 171 PCSEIFFDQGECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI++D+G               E  R++E+WNLVF Q+++Q+      LP  +IDTG
Sbjct: 181 PCSEIYYDRGPHYGDDTWADYAQTRESARFLEVWNLVFPQYDRQDGGVLADLPFKNIDTG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287
           MGLER+A+V+Q+  + Y  D+F+ L++   +++G  YEG   V+HRV+ +H+RS +  IA
Sbjct: 241 MGLERVASVVQDVPDFYSNDVFRPLVEKVAELSGKPYEGEVSVSHRVVAEHIRSVAMTIA 300

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+  +N GRGYV+R+I+RRA  +A LLG  EP +  L+P +   MG AYPEL+  +  +
Sbjct: 301 DGVALSNTGRGYVIRKILRRASRHAYLLGLHEPTLYRLVPLVVQAMGGAYPELVTEEARV 360

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +R+E+ERF KTL+ G+  L G+L  + +  +L G+ AF LYDT+G PLD+ ++I   
Sbjct: 361 TAAIRAEEERFLKTLESGMQRLSGLLEGMERGAVLPGEEAFLLYDTYGFPLDLTKEIAEE 420

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G   ++   + ++LE  +  ARA S   G            E    TQF+GYD L    
Sbjct: 421 YG-ISVNEAEYAESLERAQETARAAS-KYGKSELFGGSQEALEGLPPTQFVGYDELE--- 475

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                   V A+V  GE ++  ++G +  VV  +TPFYAE GG+
Sbjct: 476 --------------------AQGEVLALVGAGERLDHLMAGSEATVVLSRTPFYAEGGGE 515

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG    +G R  + D +K   GI++H  +VE G L   +++   +  + +  +  +H
Sbjct: 516 VGDTGVLEWEGGRGLVRDTRKTPAGIWLHDVLVEEGELTPGVTVRGVVSSERQ-AIQRHH 574

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG  V Q GS + P+ LRFD TH   +T+ EL  +E  V+  +  N 
Sbjct: 575 TATHLLHAALRAVLGPGVRQAGSLVAPERLRFDFTHGAALTADELGQVERLVSRWVTANF 634

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTHVSSTG 703
           PV  R M   +A A+GA AL G KY D VRVV     + + D  V S  LCGG HV+ TG
Sbjct: 635 PVTWREMPLAEAKAAGATALFGEKYGDTVRVVRVEGGIPFGDATVTSMELCGGAHVTRTG 694

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    IVS+ ++ AG+RRIEA+ G+ A + +  Q   +  ++  L  S   +  RV  +
Sbjct: 695 DIGAFVIVSDENVAAGVRRIEALAGEAATAWVRAQLNNVHRVSGLLNTSPDTLETRVIGL 754

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             + R  Q   A+ + QL    +         ++         +S ++  EL+   D L 
Sbjct: 755 QSQLRAAQQETAQARRQLAEAQMGGASTQQVRELGGFKVAVLRLSGIEGGELRGAADKLL 814

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +  + + ++       K  V+      +    +A  L    A   GG G GGRP MAQ+
Sbjct: 815 DQSGADLAVIAS----DKGLVVKASKTAVARGAHAGQLIGKLAAAGGGKG-GGRPDMAQA 869

Query: 878 GGPNGNKADQAIAGV 892
           G  N   A  A+   
Sbjct: 870 GIGNPEAALAALDTA 884


>gi|194759416|ref|XP_001961945.1| GF14684 [Drosophila ananassae]
 gi|190615642|gb|EDV31166.1| GF14684 [Drosophila ananassae]
          Length = 966

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/973 (31%), Positives = 455/973 (46%), Gaps = 87/973 (8%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           M       +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P  
Sbjct: 1   MKFLTAKEVRDAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW  
Sbjct: 61  EMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWQF 120

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +        + D E  +LW  + GL  + I+  +  DNFW M E
Sbjct: 121 LTERLGLPKDRLYVTYFGGDKASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGE 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSE+ FD+           + +    +EIWNLVF+QF +++      LPK  ID
Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276
            GMG ER+ +V+Q K +NYD DLF  L +A +            G        + +RV+ 
Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGTDDVDGIDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVNTVVDLLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G
Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQATIPGDVAWRLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ Q +   + L  ID+  +       +  +   S G G+   E+I   +       
Sbjct: 419 FPVDLTQLMAEEKSL-QIDMEGYEA----AKHNSYILSQGKGASKIEEINLDVHAISQLQ 473

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +  G        F  +   V  ++         +S + A+  + + V E  SGQK  +V 
Sbjct: 474 E-QG-VAPTNDSFKYKYEAVSDERDSAYNYGECTSKIVALRFENQFVNEITSGQKAGIVL 531

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE+GGQ+ D G  +            +    G ++ H  V  G L+    L L 
Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELQLH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKGAMTIEQVAK 651

Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682
            E+   +++  N+P+  +           G  ++    Y D VRV+S             
Sbjct: 652 TENLTKEMVYNNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEKTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771

Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAK---- 776
           + +   LK +                +V   E+I          +E R L     K    
Sbjct: 772 QEIVK-LKATIDADTSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830

Query: 777 --RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826
             R L+  V      K         D   +   +   ++ K L + +  ++ ++ +   M
Sbjct: 831 KERALRAAVSTTVVEKAKELCEKNPDAIVLVEQLEAFNNTKALDAALKQVRSQLPNAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
              +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K
Sbjct: 891 FFSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949

Query: 885 ADQAIAGVASFLK 897
            D+ +     F +
Sbjct: 950 VDEIVELATKFAQ 962


>gi|71891957|ref|YP_277687.1| alanyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|83305841|sp|Q493M6|SYA_BLOPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71796063|gb|AAZ40814.1| alanyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 879

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/897 (39%), Positives = 522/897 (58%), Gaps = 56/897 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N+  IR  FL FF+K GH+++ SS+LIP +D TL+FTNSGM  FKNIF G +KP+++ V
Sbjct: 3   KNIDDIRQEFLNFFKKKGHKIISSSTLIPNSDQTLLFTNSGMNQFKNIFLGIDKPLFKRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
            T Q+CVRAGGKHNDL+NVG T RH TFFEMLGNFSFG YFK  AIQ AW+LLT    F+
Sbjct: 63  ATAQRCVRAGGKHNDLNNVGYTERHLTFFEMLGNFSFGDYFKNEAIQFAWELLTDVNWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGPC 172
           L + +L++TV++ D E++ +W     +  + I++I         +DNFW M   GPCGPC
Sbjct: 123 LSKNKLWVTVHNCDGESYDIWSNQIDIPNEHIVKIGSNTNDFCDSDNFWQMGNIGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D+G+   GG PGS EE GERY+EIWNLVF+QF++Q       LP +S+DTGMGLE
Sbjct: 183 SEIFYDRGDRFQGGPPGSLEEFGERYVEIWNLVFIQFDRQENGRLLSLPMLSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+ ++LQ   +N+ ID+FK LI +  ++  +     N  +  VI DH+R+ SFLI DG+L
Sbjct: 243 RITSILQGVNSNFSIDVFKKLISSISRIMKINDIYIN-RSVYVIADHIRACSFLIQDGVL 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           PANEGRGYVLRRI+RRA+ + + LG  +     L+  L   M      L + K  I E L
Sbjct: 302 PANEGRGYVLRRIIRRAILHGKKLGVNDIFFYKLVSPLIKYMQHIADILHEKKDFIAEIL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
            SE++ F  TL RGL LL+  L  L     LNG++AF LYDT+G P ++ QD+   RG+ 
Sbjct: 362 LSEEKLFQDTLKRGLELLEKQLIRLK-GNCLNGEIAFNLYDTYGFPFELTQDVCLKRGIH 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+QA+  Q+   +  +        +  +  L     ++ F+GYD L        
Sbjct: 421 -VDQEGFDQAMLTQKKYTKELNKF------DISYEKLSLCNVSSIFVGYDKL-------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ Q  + + +  + ++  V+ + TPFY E+GGQ+GD 
Sbjct: 466 ---------------ICKSRVMALFQNNKSINKIYTKEEGIVILNNTPFYGESGGQIGDC 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         Q+++ +K  +    H  IV  G +     +V  +D   R+ +S+NHSATH
Sbjct: 511 GQLNTISGFFQVSNTKKYGQT-IGHLGIVNSGTISVGEEIVAQVDQHKRKCISLNHSATH 569

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  ALS +LGSHV+Q GS +    LRFD  H   +T+ ++ ++E+ VN+ I +N P+  
Sbjct: 570 LLRAALSQVLGSHVTQKGSLVNDRYLRFDFYHHATMTTTQMNTVENIVNEQIWKNAPITV 629

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  E A  SGA  L+  +Y+ +VRV+ +     G  S+ LCGGTH   TGEI +  I 
Sbjct: 630 DVMPIELARNSGAVILINKQYDKKVRVLKI-----GNFSTELCGGTHAEHTGEIGVFMIT 684

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E SI AGIRR+EA+T   A S +      LK++    +    N++ ++ E    Y+KL+
Sbjct: 685 KECSIAAGIRRVEAVTNNVALSAIHQYKMLLKNIFQSTQSDDKNILSKIHEFKCRYQKLE 744

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 + Q  ++         + I DV  +   +  + SK L ++ D ++ +++SG+I+
Sbjct: 745 KEIDTLRNQQIIQQSLSFIKDVYYIKDVRILVKQVVNMTSKTLFNMTDCIKHQLKSGVIV 804

Query: 827 LVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L+ ++  KK ++++ VT+DL++  R NA+ L     K+LGG G GGRP  AQ+G  N
Sbjct: 805 LINLNTNKKINLVVAVTKDLIERNRINALSLVHYIIKILGGKG-GGRPDFAQAGINN 860


>gi|228477888|ref|ZP_04062502.1| alanyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228250378|gb|EEK09618.1| alanyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 872

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS +F I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L++L K   + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+ Y+    
Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL-YE---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  IV      +   SGQ   +VF+QTPFYAE G
Sbjct: 465 -------------------AETAESRLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G        +    V  ++A      H +   G L    +  L ID+  R ++ 
Sbjct: 505 GQVADHGTISDAAGTVVARVVDVQRAPNGQALHTVEVEGELVVGANYKLEIDHTRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +  PV T   + + A + GA AL G KY   VRVVS+     G +S  LCGGTHV++T E
Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+T + A      +++ LK++A+ LK  Q   V  +V  +
Sbjct: 680 IGMFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+   LQ  +A  K +              +   V +++  +   D+  L++  D  ++
Sbjct: 740 QEQLHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
              S +++L     EK   ++   ++D     +A +L ++ A ++  G GGG+P MA +G
Sbjct: 800 ADYSDVLVLAAHIGEKVNVLVASKSKD----VHAGNLIKVLAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + N     ++ VA  L
Sbjct: 855 GSDANGIQDLLSAVAEQL 872


>gi|251782836|ref|YP_002997139.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391466|dbj|BAH81925.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 872

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/916 (35%), Positives = 494/916 (53%), Gaps = 68/916 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y ED++++  W  + G+    +I +   +NFW +   GP GP +EIF
Sbjct: 117 WFDFPKEKLYMTYYPEDKDSYNRWLAL-GVDPSHLIPL--EENFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF    +    E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLEEDLENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIKEVEKLSGQTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVQTVGEIMASYYPEILEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L +   + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDQLLAQLKEAGKDTLEGKDIFKLYDTYGFPVELTEEMA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L     ++ F+ Y+    
Sbjct: 413 EEAGYK-IDHDGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGITESSTFL-YE---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  V + +  I+   E  E    GQ   +VFDQTPFYAE G
Sbjct: 465 -------------------TETVDARLAVIIVDNERSEVVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G        +    +  +KA      H +     L  +    L ID++ R  + 
Sbjct: 505 GQVADRGVIKNANGDIVARVIDVQKAPNGQALHTVDVLASLALDTVYTLDIDHKRRYAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G H +Q GS    + LRFD TH + +T  EL+ IE+ VN  I 
Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVTVDELRRIEEEVNQQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L + T   + E A + GA AL G KY   VRVV +     G +S  LCGGTH+++T E
Sbjct: 625 KALAITTTETDVETAKSMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLNNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  I+ E  I +G RRI A+TGQ+A      Q++ LK +A  LK  Q   V  +V  +
Sbjct: 680 IGLFKILKEEGIGSGTRRILAVTGQQAFESFRKQEDALKEIAHTLKAPQMDQVPAKVVSL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R LQ  +A+ K +              ++  + +++  +S  D+  L++  D  ++
Sbjct: 740 SEQLRDLQKENAELKEKAAAAQAGDVFKEVKEVNGLRYIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   +++     +A ++ ++ A ++  G GGG+P MA +G
Sbjct: 800 KDYSEVLVLVAAIGEKVNVLVASKSKE----VHAGNMIKVLAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVAS 894
           G + +K    +A V  
Sbjct: 855 GSDASKISDLMAAVPE 870


>gi|308184987|ref|YP_003929120.1| alanyl-tRNA synthetase [Helicobacter pylori SJM180]
 gi|308060907|gb|ADO02803.1| alanyl-tRNA synthetase [Helicobacter pylori SJM180]
          Length = 847

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/892 (35%), Positives = 484/892 (54%), Gaps = 57/892 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  ++I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFERIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFELCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 + V        + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     
Sbjct: 456 ----CLAKVLGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKDNEEAA 511

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LG
Sbjct: 512 LVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLG 569

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   
Sbjct: 570 LHVSQAGSLVESKRLRFDFSHPKALNDEELERVEDLVNAQIFKHLNSQVEHMPLNQAKDK 629

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RR
Sbjct: 630 GALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRR 684

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q           
Sbjct: 685 IEAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APV 735

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             DL   K+  V+ +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V
Sbjct: 736 SMDLPIEKVHGVSLVVGVVEQGD---IKEMIDRLKSKHEKLLAMVF-KKENERITLACGV 791

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                    A   A   A++L GG GGGR   A +GG +  K   A+    +
Sbjct: 792 KNAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAALNLAKN 839


>gi|227894659|ref|ZP_04012464.1| alanyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
 gi|227863554|gb|EEJ70975.1| alanyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
          Length = 879

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/920 (35%), Positives = 493/920 (53%), Gaps = 64/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF+++AI  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDQAIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +D  + K+W+K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLPKDKLYCTVYPKDVASQKVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E++T   KY     +    ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTPGKKYGVNKEDTTAFKIIADHVRAVSFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF  TLD GL LL  ++       D+ ++G  AFK++DT+G P ++  +   
Sbjct: 353 NVIQNEEERFQSTLDTGLSLLADLIDKAKKSPDKTISGKDAFKMFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S   + +  +L      ++F         
Sbjct: 413 DAGLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSEF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                            +     + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 461 --------------EYGVYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL ID + R  L  
Sbjct: 506 QVADHGNIYNQDGELVAKVTDVQHAPNDQNLHFVDLILPVEKGQEYVLKIDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E  VN  I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEQLVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTHV +T +I
Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I SES++ AG+RRIEA+T ++A  +L  +   L  +   +K     N++ +++ + 
Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQEDVKATKPDNIIDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +  + Q        ++N            +  D+  ++ I       +L+ + D  +  
Sbjct: 741 SDLHESQKQVEALNKKINQAKAGQIFDDVKQAGDLTVIATIADVNSMNDLRELADNWKSS 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L   + + KA+++I + +  LDR   A DL + +A + GGGG GGRP+MAQ+G
Sbjct: 801 NKSDVLVLAA-NNDGKANMIISLDKKALDRGLKAGDLIKKAAPIFGGGG-GGRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G      + AI  V   + K
Sbjct: 859 GKKPEGLNDAIKAVIDEISK 878


>gi|25010884|ref|NP_735279.1| alanyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|41018224|sp|Q8E600|SYA_STRA3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|23095263|emb|CAD46473.1| Alanyl-tRNA synthetase [Streptococcus agalactiae NEM316]
          Length = 872

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDNIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  + + K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  L
Sbjct: 855 GSDASKIAELLAAVAENL 872


>gi|170016825|ref|YP_001727744.1| alanyl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|205830134|sp|B1MXP8|SYA_LEUCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169803682|gb|ACA82300.1| Alanyl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 894

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/930 (34%), Positives = 478/930 (51%), Gaps = 70/930 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSEVRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSVIPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEM+GNFS G YFK   I  AW+LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTLFEMMGNFSVGDYFKAEVIPWAWELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD+  LY+TVY +D+EA K+W + + L    I  +   DNFW + E GP GP SEIF
Sbjct: 117 WYGLDKDLLYVTVYPKDQEAKKIWLEKTDLPEGHIYEV--EDNFWDIGE-GPSGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227
           FD+G                 E ERY+EIWN+VF QF       +  +   LP  +IDTG
Sbjct: 174 FDRGPAFQNLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNAQYPELPHKNIDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNNI----VNHRVIVDHLRSS 282
           MGLER+ +V Q    N+D DLF  +I+A+E++     Y+         + +VI DH+R+ 
Sbjct: 234 MGLERLVSVFQNGRTNFDTDLFLPIIRATEKMSPDYTYDATKDSESNTSFKVIADHIRAI 293

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +F I DG LPANEGRGYV+RR++RRA+ + + LG     +  L+P +   M S YPE+  
Sbjct: 294 TFAIGDGALPANEGRGYVIRRLLRRAVLHGQKLGIQGEFLTKLVPIVAEIMQSYYPEIAD 353

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDI 400
               I++T+ +E++RF  TL  GL LL+ V++       ++++G  AFKL DT+G PL++
Sbjct: 354 NTEKIQKTIAAEEKRFNATLTGGLSLLNDVIAKAKASGQQVISGADAFKLSDTYGFPLEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q+     GL    +   +    ++     A S     G    +   LK     + ++G+
Sbjct: 414 TQEQAADEGLTVDVVGFNDALQAQRTRARAARSNDKSMGVQNAVLTDLK---VPSDYVGW 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE----EAVSGQKVEVVFD 516
                S                      ++IV  I    + V+     A  G  V++VFD
Sbjct: 471 SETEVSN---------------------AAIVAIIGHDNQGVDALLANAEPGDSVQLVFD 509

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK-AEGIFVHHAIVERGILRTEMSLVLTI 575
           +TPFYAE GGQ+ D G  +     +       + A      H +      +    + L +
Sbjct: 510 KTPFYAEMGGQVADQGEVLNKQGEVVARVTDTQSAPNGQHVHTVEVVTSFKLGDQVALKV 569

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +      +S NH+ATHLL   L  ++G  V Q GS + P+ LRFD TH  P++   L+ I
Sbjct: 570 NLARHVAISKNHTATHLLDQTLRNVIGGDVHQAGSLVEPEYLRFDFTHEGPVSEQNLEKI 629

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN +IA NLP+     + E A   GA A+ G KY D VRVVS+     G  +    G
Sbjct: 630 ETMVNQVIANNLPITWVETDIESAKKMGAVAVFGEKYGDVVRVVSI-----GDFNKEFDG 684

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-G 754
           GTH  +T E+ L  IVSES I AG+RRIEA+TG  A S    +++ LK +A  LK  +  
Sbjct: 685 GTHAQTTAELGLFKIVSESGIGAGVRRIEAVTGLAALSQFKAEEQALKVIADSLKAQKLT 744

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKEL 809
           +   +VE++  E + LQ      + QL                   +++  +       L
Sbjct: 745 DAPAKVEDLQVEIKTLQRHLTSVEAQLANAAAQDVFKDVKTQNGYQYITAQLQVSGMDGL 804

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           + V+D  ++   S +++L     + K S+++  + +   + F A DL +  A  +GGGG 
Sbjct: 805 RQVVDTWRENYPSDVLVLA-THVDDKVSLIVAASPEANKKGFKAGDLIKAIAPKIGGGG- 862

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGRP MAQ+GG N    + A + V++FL +
Sbjct: 863 GGRPDMAQAGGKNPAGINDAFSAVSTFLDE 892


>gi|322391767|ref|ZP_08065232.1| alanine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321145247|gb|EFX40643.1| alanine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 872

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP  
Sbjct: 1   MKQLSSAQIRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWVE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPDHIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L      +++G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKAKGQSVIDGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  ID   F  A++EQ+ RARA ++  GS   +    +L+     + F        
Sbjct: 413 EEAGMT-IDRDGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESHF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + +SS + AIV     VE    G    ++F +TPFYAE G
Sbjct: 462 ----------------NYNASQLSSKLVAIVADNTEVEAVSEG-TASLIFAETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  +     +       +KA      H +     L       L ID   R ++ 
Sbjct: 505 GQVADHGQILDAVGNVVANVTDVQKAPNGQPLHTVEVLAPLALNQEYTLAIDTNRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T E
Sbjct: 625 EAIAIKTIETDIDTAKEMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVANTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG+ A      Q++ LK  A+ LK  Q   V  +VE +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTGKEAFEAYRQQEDALKVAAAALKAPQLKEVPHKVEAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ ++LQ  +A+ K +              +    +F++  +S  D+  L++  D  ++
Sbjct: 740 QEQVKQLQKENAELKEKAAAVAAGDVFKHVQEANGHSFIASQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKTKD----VHAGNVVKELASIV-DGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  K  + +  VA  L
Sbjct: 855 GSNQAKIQELLDAVADKL 872


>gi|22536974|ref|NP_687825.1| alanyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76799299|ref|ZP_00781465.1| alanyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|41018221|sp|Q8E0C4|SYA_STRA5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|22533828|gb|AAM99697.1|AE014228_18 alanyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76585342|gb|EAO61934.1| alanyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
          Length = 872

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/918 (34%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  + + K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  L
Sbjct: 855 GSDASKIAELLAAVAENL 872


>gi|320528371|ref|ZP_08029533.1| alanyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320131285|gb|EFW23853.1| alanyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 900

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/915 (34%), Positives = 473/915 (51%), Gaps = 62/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF   G  + P +SLIP NDPTL++ N+G+   K  F G EKP    + 
Sbjct: 29  SGNEVRQKFLDFFASKGCMIEPGASLIPHNDPTLLWINAGVSALKKYFDGSEKPASNRIC 88

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVGRT RHHTFFEMLGNFS G YFK+ AI  AW+ LT  +    
Sbjct: 89  NAQKSIRT----NDIENVGRTARHHTFFEMLGNFSIGDYFKKEAITWAWEFLTSPEWIGF 144

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RLY+TVY +D+EA+  W    G+    I R  T DNFW +   GP GP +E+++D+G
Sbjct: 145 DPKRLYVTVYPDDDEAYNQWV-QVGMIPSHIRR--TEDNFWEIGR-GPGGPDTELYYDRG 200

Query: 181 ECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNKQ----ERFILPKMSIDTGMGLE 231
           E                E +RYIE+WN+VF Q++ +  +    E   LP+ +IDTGMGLE
Sbjct: 201 EKYDPEGIGEKLFFEDLENDRYIEVWNIVFSQYDCRPGEVDRHEYKELPQKNIDTGMGLE 260

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGI 290
           R+  ++Q+   N+D DLF  +I A+E+     Y      + +RVI DH+R+ +F IADG 
Sbjct: 261 RLVCLIQDGETNFDTDLFLPIIHATEKYAKHSYSEKEYKMAYRVIADHIRTVTFAIADGA 320

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           + +NEGRGYVLRR++RRA+ Y   LG     M  L+  +   M S YP L +   LIE+ 
Sbjct: 321 MFSNEGRGYVLRRVLRRAVRYGIKLGIDGAFMYKLVKVVADIMISYYPYLQEKISLIEKL 380

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+E F KTL  G  LL   L+     +IL G+V FKLYDT+G P ++  +I    G 
Sbjct: 381 VKQEEESFHKTLANGEALLQNALAEHADTKILPGEVMFKLYDTYGYPKELTTEIAEEEGY 440

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F++ ++ Q++RAR     + S   +     L +    ++F GY          
Sbjct: 441 R-VDSEGFDKEMQAQKTRAREARGNIQSMHGQSA--DLMDFTQESKFTGYTDTHSR---- 493

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V  + + G  V+      + +++ D+T FYAE+GGQ  D
Sbjct: 494 -------------------GKVIGLFKDGVRVDTLT--DEGDIILDETCFYAESGGQCAD 532

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D  +  +T+VQK      +HH  +  G +     L    DY+ R++   NHS+ 
Sbjct: 533 TGVVWNDHFKANVTNVQKAPHKQPLHHIAIVEGTVSEGNVLEGEYDYEKRQRTRANHSSL 592

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG H++Q GS    +  RFD TH +  T  +L  +E  VN  IA   P+V
Sbjct: 593 HLLQAALKKVLGDHIAQAGSYNCAEYGRFDFTHFEKPTEEQLNEVERLVNKQIALAQPIV 652

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  E A  SGA AL   KY D VRVVS+     G  S   CGGTH ++T ++ +  I
Sbjct: 653 TEVMAVEAAKNSGAIALFDEKYGDTVRVVSM-----GDFSKEFCGGTHANNTADLCVFKI 707

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRK 769
            SE SI +GIRRI + T   A      +++ L   A  +K+        ++  + EE  +
Sbjct: 708 TSEESIGSGIRRITSETKFDAYKDFKDEEQYLLECAKLMKLQSWQGFKEKLVALQEENAQ 767

Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+  +   K    +            I  ++ +   +   D+  LK+  + ++ K+  G 
Sbjct: 768 LRKDNDAHKQAELLSSADTAVQKAETINGLSCVLLSLDGFDTNSLKTYAENVRNKLVDGF 827

Query: 825 IMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           + +   + + K + +   ++  +     A D+ + +A+ L GG GGGRP MAQ+GG + +
Sbjct: 828 VFV-SNTTDGKVTFVCASSKTAIAKGKKAGDIVKAAAQ-LTGGNGGGRPDMAQAGGKDTS 885

Query: 884 KADQAIAGVASFLKK 898
           K  +A + V   L +
Sbjct: 886 KVQEAHSLVREILAQ 900


>gi|323352646|ref|ZP_08087616.1| alanine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322121682|gb|EFX93428.1| alanine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 872

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/915 (35%), Positives = 487/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE                E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G   FKLYDT+G P+++ ++I    
Sbjct: 356 VKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDVFKLYDTYGFPVELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA ++  GS   +    +L+     + F           
Sbjct: 416 GMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN--ETLQNITVESVF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                            + + S + AIV     VE    G    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G       + +      +KA      H +     L    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDGAGKLVAQVTDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +     F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKDVQEANGHRFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPDLLAAVAEKL 872


>gi|86741900|ref|YP_482300.1| alanyl-tRNA synthetase [Frankia sp. CcI3]
 gi|123750882|sp|Q2J821|SYA_FRASC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|86568762|gb|ABD12571.1| alanyl-tRNA synthetase [Frankia sp. CcI3]
          Length = 881

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/915 (34%), Positives = 481/915 (52%), Gaps = 56/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR+ FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G     +   
Sbjct: 1   MDTAEIRSRFLNHFARRGHTVVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQKCVR      D++NVG T RH +FF+M GNFSFG YFK  AI  A++LLT+ F   
Sbjct: 60  ASVQKCVRTV----DIENVGHTARHASFFQMCGNFSFGDYFKAEAIPFAFELLTEGFGFK 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA  +W+K+  L A++I R    DNFWSM   GPCGPCSEI+FD+G 
Sbjct: 116 ADDLWATVYLDDDEAEGIWRKL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRGC 173

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236
              G   G   + ERY+E+WNLVFMQ+E+             LP  +IDTGMGLERMAT+
Sbjct: 174 AY-GREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPIERELPARNIDTGMGLERMATI 232

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++ A+ ++TG +Y  +  + V  RVI DH R+++ LI+DG++P+N
Sbjct: 233 LQGVDNLYEIDISRPVLDAAGRLTGRRYGADPADDVRLRVIADHTRTAAMLISDGVVPSN 292

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  L   + + MG+ YPEL+     I     +E
Sbjct: 293 EGRGYVLRRMLRRAIRNARLLGAHEPVMSELFAVVGSAMGTIYPELLDNAETITGVAVAE 352

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++ F +TL  G  + D             L G+ AFKL+DT+G P+D+  ++    GL+ 
Sbjct: 353 EQAFAETLRTGTTIFDTAARQARSLGSTTLGGEAAFKLHDTYGFPIDLTLEMAAEAGLS- 411

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + ++ QR  A+A       G  +   +  +  + G T F GY+ L  +  +  
Sbjct: 412 VDEAGFRRLMDRQRQAAKADRAARRIGNVDLSAFRPILARSGPTTFTGYEELSRTSGVVG 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
              +                                   V VV D TPFYAE+GGQ  D 
Sbjct: 472 LVGIADGAGLAAAGEDTE---------------------VGVVLDATPFYAESGGQEPDL 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    DG  +++ DVQ+    + +H   V  G LR  + +   +D   RR +S +H+ATH
Sbjct: 511 GRLRFDGGEVEVLDVQRPVPDLVLHRVRVLGGELRLGVEVFAEVDADRRRAVSRSHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H A    LG   +Q GS  +P  LRFD      +  + L  +ED +N++  ++LPV  
Sbjct: 571 LVHTAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLADVEDEINEVALRDLPVRA 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +  +E+A   GA AL G KY D VRVV     D G ++  LCGGTHV+S+ ++  + ++
Sbjct: 631 FVTTQEEARRLGAMALFGEKYGDAVRVV-----DVGDYARELCGGTHVASSAQLGAVKLL 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+SI AG RR+E + G  A  +L  +   +  L++ LK     +V RV +I    R  +
Sbjct: 686 SEASISAGTRRVEGLVGLDAFRYLAREHLLVSQLSTALKARPDELVDRVTDIVGRLRDAE 745

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII 825
               + +                ++A V  ++  +       +++ +   ++ ++     
Sbjct: 746 RELERLRAAAVLAGAGALAEGAEEVAGVAVVTAEVPAGTAPDDVRLLALDVRGRLAGRPA 805

Query: 826 MLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++     +   S ++VVT+D        A DL R S   L GG GGG+P +AQ GG N  
Sbjct: 806 VVAVAKADG--SSIVVVTDDAARGRGLRAGDLVRQSWASL-GGKGGGKPDVAQGGGGNPQ 862

Query: 884 KADQAIAGVASFLKK 898
                 A +   + +
Sbjct: 863 LVPAVFARLRGLVAE 877


>gi|120403625|ref|YP_953454.1| alanyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|205830159|sp|A1T8E8|SYA_MYCVP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119956443|gb|ABM13448.1| alanyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 898

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/914 (33%), Positives = 461/914 (50%), Gaps = 70/914 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P +   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R      D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT      
Sbjct: 60  ASVQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVEAG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL+ TVY +D+EA   W++++GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGFDPERLWATVYLDDDEAIGYWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G          + E  RYIEIWNLVFMQ E+     +        LP+ +IDTGMG+
Sbjct: 176 YDRGPEYGIEGGPEANED-RYIEIWNLVFMQNERGEGTSKEDFEILGPLPRKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ DL +  I     +    Y      + V +R+I DH R+++ +I 
Sbjct: 235 ERVACLLQGVDNVYETDLLRPAIDLVAGIAPRGYGQGVHEDDVRYRIIADHSRTAAIIIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGYVLRR++RR +  A+LLG  +P+M  L+  +   M  +YPEL      I
Sbjct: 295 DGVSPGNEGRGYVLRRLLRRIIRAAKLLGVDDPIMAELMATVRDAMSPSYPELAADFDRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           +    +E+  F +TL  G  L D     +     E L+G  AF L+DT+G P+++  ++ 
Sbjct: 355 QRIAVAEETAFNRTLASGSKLFDDAARATKASGAEKLSGRDAFTLHDTYGFPIELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
               L+ +D   F   + EQR RA+A +        +   +      G T+F G+D L  
Sbjct: 415 AEADLS-VDEEGFRALMAEQRQRAKADAAARKQAHADLSAYRELVDAGPTEFTGFDELSS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA------VSGQKVEVVFDQTP 519
                                   + +  I   G+ V          + ++VE++ D++P
Sbjct: 474 -----------------------EARILGIFVDGKRVPVVAHTGREGAQERVELILDRSP 510

Query: 520 FYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE+GGQ+ D G   G    +  +  +TDVQK A+ ++ H   VE G      ++V  +
Sbjct: 511 FYAESGGQIADEGTVTGTGASETAKAAVTDVQKIAKTLWAHRINVESGEFVEGDTVVAAV 570

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R   +  HS TH++H AL  +LG +  Q GS   P  LRFD      +T  +   I
Sbjct: 571 DPRWRHGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRSQI 630

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E+  N  +  +  V +     + A A GA AL G  Y D VRVV +    GG  S  LCG
Sbjct: 631 EEVTNQAVEADFEVHSFTTELDKAKAMGAMALFGENYPDEVRVVEI----GGPFSLELCG 686

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV S+ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    
Sbjct: 687 GTHVRSSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEE 746

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIIS-EVDSKEL 809
           V  RV  + E+ R  +    + +L               +I DV  ++  ++  +   +L
Sbjct: 747 VPARVATLVEKLRAAEKELDRLRLAGARSAAVNAAAGAEQIGDVRLVAQRMAGGISGADL 806

Query: 810 KSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGG 866
           +S++  ++ K+ S   ++ L+          ++ V     DR   A +L ++    +  G
Sbjct: 807 RSLVGEIRGKLGSDPAVVALIAEGDNDSVPFVVAVNPAAQDRGVRADELVKVMGAAVN-G 865

Query: 867 GGGGRPHMAQSGGP 880
            GGG+  +AQ  G 
Sbjct: 866 RGGGKADLAQGSGK 879


>gi|312977883|ref|ZP_07789629.1| alanine--tRNA ligase [Lactobacillus crispatus CTV-05]
 gi|310895190|gb|EFQ44258.1| alanine--tRNA ligase [Lactobacillus crispatus CTV-05]
          Length = 879

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/919 (35%), Positives = 487/919 (52%), Gaps = 62/919 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT   
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLPKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E++T  K  G N       ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDDKKYGVNKEDTTAFKIIADHVRAVSFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF  TLD GL LLD ++       D+ ++G  AFK++DT+G P ++  +   
Sbjct: 353 NVIQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  +  Q+ RAR     L S   + +  +L      + F         
Sbjct: 413 DAGLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           D      + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 461 --------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL +D + R  L  
Sbjct: 506 QVADHGDIYNQDGELVAKVTDVQHAPNDQNLHFVDLILPVEKGQEYVLKLDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN  I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +T +I
Sbjct: 626 AIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K     N+V +++ + 
Sbjct: 681 GIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +    Q        ++N            +  D+  ++         +L+ + D  +  
Sbjct: 741 SDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSG 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +S +++L   +  K   ++ +  + L     A +L +++A + GGGG GGRP+MAQ+GG
Sbjct: 801 NKSDVLVLAAENAGKANMIIALDQKALDKGLKAGNLIKIAAPIFGGGG-GGRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFLKK 898
            N    + AI  V   + K
Sbjct: 860 KNPAGLNDAIKAVIDEISK 878


>gi|78187794|ref|YP_375837.1| alanyl-tRNA synthetase [Chlorobium luteolum DSM 273]
 gi|123582508|sp|Q3B1I7|SYA_PELLD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78167696|gb|ABB24794.1| alanyl-tRNA synthetase [Chlorobium luteolum DSM 273]
          Length = 887

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/913 (36%), Positives = 491/913 (53%), Gaps = 67/913 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR +FL+FF    H ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y   
Sbjct: 1   MHSREIRQSFLDFFAAKSHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+KE AI  AW+LLT+ + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAISWAWELLTEVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY TVY +D+E+ ++W + + +    I+R    DNFW M ETGPCGPCSEI  D   
Sbjct: 121 ADRLYATVYHDDDESARIWAEKTSIEPSHILRFGDKDNFWEMGETGPCGPCSEIHIDLTP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G    +    R IE+WNLVF+Q+++Q       LP+  +DTGMG ER+  V+Q K 
Sbjct: 181 D-GSGKELVNAGDHRAIELWNLVFIQYDRQPDGRLEPLPQRHVDTGMGFERVCAVMQSKA 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F  L Q   ++TG+ Y    +G   +  RVI DH R+ +F ++DG +P+NEGR
Sbjct: 240 SNYDTDVFLPLFQRLSELTGVTYGASMDGRQDIAMRVIADHARTLTFALSDGAMPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y+R LG + P++  L+  L   MG  + EL   +  +E  +R+E+E 
Sbjct: 300 GYVLRRILRRALRYSRDLGCSGPILHQLVGTLADSMGDVFGELRDRRDAVERIIRAEEES 359

Query: 358 FGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ +   +   +      +L G+ AFKLYDT+G P D+ + +    GL  +D 
Sbjct: 360 FITTLDRGMEIFGELAAATARAGGRMLKGEDAFKLYDTYGFPFDLTRLLATEAGL-DVDG 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++EQ+SRAR+              +       AT F+GYD L     +      
Sbjct: 419 EGFEHCMQEQKSRARSDRREKQQTGDGAGSWQWFSDSHATTFLGYDRLAMPSTI------ 472

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                     +  A +   + +V  +TPFYAE+GGQ GD G   
Sbjct: 473 --------------------------IGAAHASGHLLLVLAETPFYAESGGQTGDRGWLE 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-----------MSLVLTIDYQNRRQLS 584
               R+Q+TD +K  +      +     +  TE             +  +++   R++  
Sbjct: 507 SAAYRMQVTDTRKDGDSFVHVVSRAFDKVRDTEIDPMDIVIEEATPVDASVERILRQETE 566

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILGSHV Q GS +T + LRFD +H   +T  E++++E  VN+ I 
Sbjct: 567 RNHTATHLLHAALRRILGSHVQQKGSFVTSERLRFDFSHFSKMTPEEIQAVEAEVNEHIR 626

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
               V     +  ++AIA GA A  G KY +RVR+V V           LCGGTHV + G
Sbjct: 627 CAAHVSKHADLPYDEAIAKGALAFFGDKYAERVRMVEVPGISA-----ELCGGTHVDNIG 681

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762
           +I +  I+SESS  AGIRRIEA+TG+ A   L  +  +L+ +   LK+     V  ++ E
Sbjct: 682 QIGIFKIISESSAAAGIRRIEALTGRAAEMLLWKEYHELQDVRQQLKLKADEAVAEKLAE 741

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE ++L+   A  K    ++ L     S  +I     ++ ++  VD+  L+S   AL+
Sbjct: 742 LQEEKKELEKELAGLKSASVIDALVRDATSAEEIGGCRIVTKVLEGVDADTLRSAAMALR 801

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +K+     +L  I+ + K S+    ++  +     +A  L RL+A  + GGG GGR  +A
Sbjct: 802 EKLPVSAGLLCSIA-DGKVSLAAFSSDVAVKEKGIDAGKLIRLAAAAVKGGG-GGRAELA 859

Query: 876 QSGGPNGNKADQA 888
            +GG N +   +A
Sbjct: 860 TAGGKNPDGVAEA 872


>gi|298735738|ref|YP_003728263.1| alanyl-tRNA synthetase [Helicobacter pylori B8]
 gi|298354927|emb|CBI65799.1| alanyl-tRNA synthetase [Helicobacter pylori B8]
          Length = 847

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/892 (36%), Positives = 485/892 (54%), Gaps = 57/892 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLMHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ARVDMQGFENCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 + V        + + EA   Q+V V+ ++TPFYAE GG +GD G    D     
Sbjct: 456 ----CPAKVLGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKDNEEAA 511

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LG
Sbjct: 512 LVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLG 569

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A   
Sbjct: 570 SHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDK 629

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RR
Sbjct: 630 GALALFSEKYAENVRVVSFKE-----VSIELCGGIHVENTGLIGGFRIVKESGVSSGVRR 684

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q           
Sbjct: 685 IEAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APV 735

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V
Sbjct: 736 SMDLPIEKIHGVSLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGV 791

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                    A   A   A++L GG GGGR   A +GG +  K   A+    +
Sbjct: 792 KNAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAALNLAKN 839


>gi|195115683|ref|XP_002002386.1| GI12987 [Drosophila mojavensis]
 gi|193912961|gb|EDW11828.1| GI12987 [Drosophila mojavensis]
          Length = 967

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/974 (31%), Positives = 458/974 (47%), Gaps = 88/974 (9%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           M       +R  +L FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P  
Sbjct: 1   MKFLTAKEVRDAYLNFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGIADPNS 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 61  EMSKWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT   +L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M E
Sbjct: 121 LTDRLNLPKDRLYVTYFGGDAANGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID
Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276
            GMG ER+ +V+Q K +NYD DLF  L  A +            G        + +RV+ 
Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDADGIDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 299 DHARTITIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVTTVVELLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTH 394
           A+PE+ +    I + +  E+++F KTL RG  LL+  +  L    + + GDVA++LYDT+
Sbjct: 359 AFPEVKKDPQHIMDIINEEEQQFLKTLSRGRNLLNRTIEKLGADQKTIPGDVAWRLYDTY 418

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ Q +   + L  ID+  ++      +  +   S G G+   ++I   +      
Sbjct: 419 GFPVDLTQLMAEEKSL-QIDMDGYDA----AKHNSYILSQGKGASKIDEINLDVHAISEL 473

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
            +  G        F         ++      +  +S + A+  + + V+E  SGQK  +V
Sbjct: 474 QE-KG-VPPTNDSFKYIYEAESNERDSAYKFSDCTSKIVALRYENKFVQEITSGQKAGIV 531

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE+GGQ+ D G  +            +    G ++ H  V  G L     + L
Sbjct: 532 LDKTNFYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVEGTLAVGDEVQL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++ 
Sbjct: 592 HIDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVA 651

Query: 634 SIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682
             E    D++ + +P+  +           G  ++    Y D VRV+S            
Sbjct: 652 KTEQLTRDMVYKEMPIYAKESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDQLESQP 711

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             E G   S   CGGTH+ ++G IM   I SE +I  GIRRI A+TG  A   L   +  
Sbjct: 712 DSEAGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEGF 771

Query: 742 LKSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAK--- 776
            K ++  LK +                +V   E+I          +E R L     K   
Sbjct: 772 EKEIS-TLKATIEADKTGKDSKLYVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKTLD 830

Query: 777 ---RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGII 825
              R L+  V      +           N +   +   ++ K L + +  ++ ++     
Sbjct: 831 DKERALRAAVSVTVVEQAKALCEANPKANVLVQQLEAYNNTKALDAALKQVRSQLPDAAA 890

Query: 826 MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           M V +  + KK   L  V +  +++   A +  +  + VL GG GGG+P  AQ+ G N  
Sbjct: 891 MFVSVDADSKKVFCLCSVPKSAVEKGLKANEWVQHVSPVL-GGKGGGKPESAQASGSNFE 949

Query: 884 KADQAIAGVASFLK 897
           + D+ +   + F +
Sbjct: 950 RVDEIVQLASKFAQ 963


>gi|171779579|ref|ZP_02920535.1| hypothetical protein STRINF_01416 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281681|gb|EDT47115.1| hypothetical protein STRINF_01416 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 872

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/918 (35%), Positives = 488/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEVLEKREFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ +R E+E F +T+D G  +LD +L+ L     + + G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVRREEETFARTIDAGSNMLDQLLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G   ID   F  A++EQ+ RARA  +  GS   +    +L      + F        
Sbjct: 413 EDKGFK-IDHAGFEAAMKEQQERARASVVKGGSMGMQN--ETLSSITEESVF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + S +  I+   E  E    GQ   +VF +TPFYAE G
Sbjct: 462 ----------------SYEEEVLESTLSVIIADKERTEAVSEGQ-ALLVFAKTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D   +    +  +KA      H +     L    +  L ID + R  + 
Sbjct: 505 GQVADHGVIKNDKGDIVARVIDVQKAPNGQALHTVEVLASLSVGTTYTLEIDAKRRHSVI 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I 
Sbjct: 565 KNHTATHLLHAALHHVIGEHATQAGSLNEEGFLRFDFTHFEAVTADELRQIEEEVNQQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PV+T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T E
Sbjct: 625 NAIPVITVETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+TG+ A      ++E LK++A  LKV Q   V  +V  +
Sbjct: 680 IGIFKIVKEEGIGSGTRRILAVTGKEAFEAYRQEEEDLKAIAETLKVPQLKEVTKKVVSL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+  KLQ  +A+ K +              +   + F++  ++  D+  L++  D  ++
Sbjct: 740 QEQLHKLQKENAELKEKAAAAQAGNVFKDVKEANGLRFIASQVTVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++L     EK   ++   ++D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G +  K    +A VA  L
Sbjct: 855 GSDAAKIADLLAAVAENL 872


>gi|317014630|gb|ADU82066.1| alanyl-tRNA synthetase [Helicobacter pylori Gambia94/24]
          Length = 847

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/892 (36%), Positives = 489/892 (54%), Gaps = 57/892 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF+  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKFVSV--DRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L+    ++TG+ Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMAEISELTGLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFENCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                S+ V        + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     
Sbjct: 456 ----CSAKVLGFFDSDFKEMTEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKDDEEAA 511

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LG
Sbjct: 512 LVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RFEIAKHHSATHLLQSALREVLG 569

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A + 
Sbjct: 570 SHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKSR 629

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + +G+RR
Sbjct: 630 GALALFSEKYAENVRVVSFKE-----ASIELCGGVHVENTGLIGGFRILKESGVSSGVRR 684

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G+        + ++LK+    LK +  +V+  + ++ E  +  Q           
Sbjct: 685 IEAVCGKAFYQLAKEESKELKNAKILLKNN--DVIAGINKLKESVKNSQK-------APV 735

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V
Sbjct: 736 SMDLPVEKIHGVSLVVGVVEQGD---IKEMIDRLKNKHERLLAMVF-KKENERINLACGV 791

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                    A   A   A++L GG GGGR   A +GG +  K   A+    +
Sbjct: 792 KNAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAALNLAKN 839


>gi|290580864|ref|YP_003485256.1| putative alanyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254997763|dbj|BAH88364.1| putative alanyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 872

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/918 (35%), Positives = 494/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+F++   H + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQVRQMWLDFWKSKDHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDDAIKWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FDL + +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDLPKDKLYMTYYPDDKDSYNRWIE-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDHIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L+ L     + L G   F+LYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSNMLDQLLADLKAADKDTLEGKDIFRLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA+ +  GS   +    +L      + F        
Sbjct: 413 EDAGFK-IDHQGFQAAMKEQQERARANVVKGGSMGMQN--ETLSNITEKSTF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + S +  I+   E +E    GQ V +VF +TPFYAE G
Sbjct: 462 ----------------NYEKEALDSSLSVIIADNERIEAVSEGQ-VLLVFSETPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D    +      +KA      H +   G L    +  L ID++ R ++ 
Sbjct: 505 GQVADHGLIKNDKGDTVARVTDVQKAPNGQALHTVDVLGSLSVGTTYHLEIDHERRNRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G+H +Q GS    + LRFD TH + +T  EL+ IE+ VN  I 
Sbjct: 565 KNHTATHLLHAALHNVIGNHATQAGSLNEVEFLRFDFTHFEAVTPEELRQIEEEVNQQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + +PV T   + + A   GA AL G KY   VRVVS+     G +S  LCGGTH+ +T E
Sbjct: 625 KAIPVTTIETDLDTAKEMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHLKNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+T + A      +++ LK +A+ LK  Q   V  +V  +
Sbjct: 680 IGIFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDILKEIAATLKAPQMNQVANKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            ++  KLQ  +A+ K +              ++  + +++  +   D+  L++  D  ++
Sbjct: 740 QDQLHKLQKENAELKEKAAAATAGDIFKDVKEVNGLRYIASQVEVADAGALRTFADQWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV  +  KK +VL+          +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLV-TNIGKKVNVLVASK---SKDIHAGNLIKTLAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +     IA VA  L
Sbjct: 855 GSDASAIKDLIAAVAENL 872


>gi|312277863|gb|ADQ62520.1| Alanyl-tRNA synthetase AlaS [Streptococcus thermophilus ND03]
          Length = 872

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/916 (35%), Positives = 493/916 (53%), Gaps = 68/916 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FDL + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDLPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEEFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A ++Q    N++ DLF  +I+  E+++G  Y+ +   ++ +VI DH+RS +F I 
Sbjct: 233 GLERLAAIMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L++L K   + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+ Y+    
Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL-YE---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  IV      +   SG K  +VF+QTPFYAE G
Sbjct: 465 -------------------AETAESRLSVIVADDARHDSVNSG-KALLVFEQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G         +      ++A      H +   G L    +  L ID+  R ++ 
Sbjct: 505 GQVADHGTISDAAGTTVARVVDVQRAPNGQALHTVEVEGELVVGANYKLEIDHSRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G+H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +  PV T   + + A + GA AL G KY  RVRVVS+     G +S  LCGGTHV++T E
Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+T + A      +++ LKS+A+ LK  Q   V  +V  +
Sbjct: 680 IGMFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+   LQ  +A  K +              +   V +++  +    +  L++  D  ++
Sbjct: 740 QEQLHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSAAGALRTFADQWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
              S +++L    +EK   ++   +E+     +A +L ++ A ++  G GGG+P MA +G
Sbjct: 800 ADYSDVLVLAAHIREKVNVLVASKSEN----VHAGNLIKVLAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVAS 894
           G + N     ++ VA 
Sbjct: 855 GSDANSIQDLLSAVAE 870


>gi|77408860|ref|ZP_00785587.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77172546|gb|EAO75688.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 872

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 491/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++  VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFXVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDATAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  + + K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  L
Sbjct: 855 GSDASKIAELLAAVAENL 872


>gi|116617672|ref|YP_818043.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272127|sp|Q03YQ2|SYA_LEUMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116096519|gb|ABJ61670.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 893

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/928 (34%), Positives = 481/928 (51%), Gaps = 70/928 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKDLSSAEIRQMFLDFFASKGHEVVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPNN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEM+GNFS G YFKE+AI  AW+LLT  +
Sbjct: 61  PRITNSQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEQAIPWAWELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +LY+TVY +D+EA K+W++ + L    I  +   DNFW + E GP GP SEIF
Sbjct: 117 WYGLDAEKLYVTVYPKDQEARKIWEEKTSLPDGHIYEV--EDNFWDIGE-GPSGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227
           FD+G                 E ERY+EIWNLVF QF       +  +   LP  +IDTG
Sbjct: 174 FDRGSSFQDLPDDDPEMYPGGENERYLEIWNLVFSQFNHLPGLTDNSQYPELPHKNIDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNNI----VNHRVIVDHLRSS 282
           MGLER+ +V Q    N+D DLF  +I+A+E++     Y+ +       + +VI DH+R+ 
Sbjct: 234 MGLERVVSVFQNGRTNFDTDLFLPIIRATEKLSNQFTYDDSQDSEVNTSFKVIADHIRAI 293

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +F I DG LP+NEGRGYV+RR++RRA+ + + LG     + +L+P +   M S YPE+  
Sbjct: 294 TFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGIKGQFLTNLVPIVGDIMESYYPEVKA 353

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDI 400
               I++T+ +E++RF  TL  GL LL+ V+    K     ++G  AFKL DT+G PL++
Sbjct: 354 NTAKIQKTVAAEEKRFNATLTGGLSLLNDVIKEAKKTGQTQISGADAFKLSDTYGFPLEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q+     GL        ++   ++     A S     G    +   L+     ++++G+
Sbjct: 414 TQEQAEDAGLTVDVDRYNDELQAQRVRARAARSNTKSMGVQNAVLTDLRVD---SKYVGW 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-----IVEEAVSGQKVEVVF 515
                +                       + + AI+ + E     +++ A     V+V F
Sbjct: 471 SQTEVNH----------------------AEIVAIIGEDEQGVDALLDNADVDATVQVAF 508

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLT 574
           D TPFYAE GGQ+ D G  +     +       + A      H +           + L 
Sbjct: 509 DVTPFYAEMGGQVPDFGDVLNTNGDVIAHVTDVQTAPNGQHIHTVDVISSFTLGDKVDLK 568

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D      +S NH+ATH+L  +L  +LG  V Q GS + P+ LRFD  +  P++S +L  
Sbjct: 569 VDMARHIAVSKNHTATHMLDQSLRNVLGGDVHQAGSLVEPEYLRFDFNNEGPVSSEDLDK 628

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  +N  IA+NLPV     + E A   GA A+ G KY D+VRVVS+     G  +    
Sbjct: 629 IESMMNQEIAKNLPVTWLETDIESAKKLGAVAVFGEKYGDQVRVVSI-----GDFNKEFD 683

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ- 753
           GGTH +ST E+ L  IVSES I AG+RRIEA+TG +A S    Q++ LK +A+ LK  + 
Sbjct: 684 GGTHANSTAELGLFKIVSESGIGAGVRRIEAVTGLQALSQYKAQEKALKEIATALKAQKL 743

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKE 808
            +   +V ++  + R +Q      + +L              +    +++  +       
Sbjct: 744 TDAPEKVYDLQADLRTVQRHAESLEAKLANATAGEIFNDVKTVNGHTYITAQLQVSGMDG 803

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           L+ V D  ++   S +++L  ++ EK + ++    +       A +L +  A  +GGGG 
Sbjct: 804 LRQVADNWKENYPSDVLVLATVADEKVSLIVAAAPDANQSGIKAGELIKSIAPHIGGGG- 862

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGRP MAQ+GG        A A V++FL
Sbjct: 863 GGRPDMAQAGGKKPAGIPDAFAAVSAFL 890


>gi|325109123|ref|YP_004270191.1| alanyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
 gi|324969391|gb|ADY60169.1| alanyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
          Length = 869

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/915 (35%), Positives = 486/915 (53%), Gaps = 73/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  +L FF++ G    PS  L+P NDPT++FT +GM  FKN F G  K  +   
Sbjct: 1   MKTDELRDAYLSFFEEKGCIRRPSDVLVP-NDPTVLFTPAGMNQFKNEFLGIGKLEFTKA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R G    D+ NVG T  HHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 60  TTCQKCLRTG----DIGNVGVTAYHHTFFEMLGNFSFGDYFKREAIHWAWEFLTDKKWLG 115

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPCSE 174
           LD  RL +TVY +D+EAF +W+   GL  ++I R    +NFW          G CGPCSE
Sbjct: 116 LDGERLTVTVYLDDDEAFGIWENEIGLPKNRIKREDEYENFWPAGAPTEGPDGVCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232
           I++                G + +EIWNLVF QF +          LP  +IDTGMGLER
Sbjct: 176 IYYH------------PPTGGKEVEIWNLVFTQFNRVGNPPDNLKPLPMKNIDTGMGLER 223

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            A VLQ   +N++ID  K L +    V G+KY     +    R I DH+R+ +  + + +
Sbjct: 224 TAAVLQGVESNFEIDTLKPLCETVGDVLGVKYNFGGEHGRAMRRIADHVRAVTMCVHENV 283

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP N+ +GYV+R+++RRA+  + L+G  EP++  L+P +   +G  YPEL +    ++  
Sbjct: 284 LPDNKEQGYVVRQLLRRAVLESYLIGKQEPVLHLLVPKVVELLGKPYPELKETVGSVQSA 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+  F  T++RGL   +  L       I++G  AF+L+ T G   ++   +     L
Sbjct: 344 IQEEENAFLDTIERGLNRFERCLDGAKSSGIISGKDAFQLHTTDGFLYELTDALAARHNL 403

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D I F++ +EE    + A      S   E    ++++  G T+F+GY+         
Sbjct: 404 K-VDRIGFDKLMEEHGIISNAG--KQKSVMAEGPLDAIRKTSGGTEFLGYEAT------- 453

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG---QKVEVVFDQTPFYAEAGGQ 527
                                V  I+ + ++V+E         + VV D+TPFYAE+GGQ
Sbjct: 454 ----------------SAEGKVVGIIAEKQLVDEVTEVGHRDVIAVVIDRTPFYAESGGQ 497

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G    DGI   + D QK  + +++H   +++G L    +L   +D + R  +   H
Sbjct: 498 VGDIGSLTADGIEFVVQDTQKDGD-LWLHIGHLKQGKLEVGQTLTAEVDGERRDAIRRAH 556

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+HHAL   LG + +Q GS +  D LRFD  H KP++  EL+ IED VN  IA   
Sbjct: 557 SATHLMHHALRETLGENATQRGSKVQQDELRFDFAHKKPVSPEELRRIEDMVNSHIANGN 616

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T +M  EDA A GA AL G KY D VRVVS+     G +S  LCGGTH+S+TG++ +
Sbjct: 617 DVATDLMKIEDARAKGAMALFGEKYPDLVRVVSM-----GDYSIELCGGTHLSNTGQVGV 671

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766
             I++E  +  G+RR+ A TG++A      ++E L+ L   LKVS   +++ +V+ +  E
Sbjct: 672 FKIIAEEPVAKGVRRLVAYTGEKAIEESRKKEELLRELMLELKVSAPEDLIRKVQSLQAE 731

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +  +   + +  Q   +++     +  K+ DV  ++     VD   L+   D L+ K +
Sbjct: 732 LKDTKKKLSDQMRQSVGDEVDTLLQNAEKVGDVAVITFQPENVDKDVLRDYADRLRTKQK 791

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
               +L+    + K ++L  V++DL+    NA D  + +AK++ GG GGGRP +A++GG 
Sbjct: 792 --AAVLLAAEIDGKVALLAAVSKDLVKQGVNASDCVKAAAKLVKGG-GGGRPDLAEAGGK 848

Query: 881 NGNKADQAIAGVASF 895
           + +K  +A+   A F
Sbjct: 849 DPSKISEALKAGAEF 863


>gi|108563608|ref|YP_627924.1| alanyl-tRNA synthetase [Helicobacter pylori HPAG1]
 gi|122386244|sp|Q1CS22|SYA_HELPH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|107837381|gb|ABF85250.1| alanyl-tRNA synthetase [Helicobacter pylori HPAG1]
          Length = 847

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/891 (36%), Positives = 483/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL+FFQ  GH + PS  L+P ND TL+FTN+GMV FK+IFTG    P     T+ 
Sbjct: 2   DIRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPHPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYTSEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFELCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G         + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQDNA---DFSAILNAYAPNEFVGYETTECPAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + EA   Q+V V+ ++TPFYAE GG +GD G    D     I
Sbjct: 467 --------------DFKEIIEANPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKVLNDEELEKVEDLVNAQIFKHLNSHVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFGEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        + ++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L GG GGGR   A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQIL-GGKGGGRDDFASAGGKDIENLQAALNLAKN 839


>gi|320546404|ref|ZP_08040719.1| alanine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320448789|gb|EFW89517.1| alanine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 891

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/918 (35%), Positives = 488/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 20  MKQLTSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 79

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  +
Sbjct: 80  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGFELLTSPE 135

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 136 WFDFPKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 191

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 192 FDRGEDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 251

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 252 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIG 311

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 312 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEVLEKREFI 371

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L+ L     + + G   FKLYDT+G P+++ +++ 
Sbjct: 372 EKIVKREEETFARTIDAGSNMLDQLLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELA 431

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G   ID   F  A++EQ+ RARA  +  GS + +    +L      + F        
Sbjct: 432 EDKGFK-IDHAGFEAAMKEQQERARASVVKGGSMSMQN--ETLSNITEESVF-------- 480

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + S +  I+   E  E    GQ   +VF +TPFYAE G
Sbjct: 481 ----------------SYEEEVLDSTLSVIIADNECTEAVSEGQ-ALLVFAKTPFYAEMG 523

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D   +       +KA      H +     L    +  L ID + R  + 
Sbjct: 524 GQVADHGVIKNDKGDIVARVTDVQKAPNGQALHTVEVLASLSVGTTYTLEIDSKRRHSVI 583

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I 
Sbjct: 584 KNHTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTADELRQIEEEVNQQIW 643

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PV+T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T E
Sbjct: 644 NAIPVITVETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAE 698

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+TG+ A      ++E LK++A  LKV Q   V  +V  +
Sbjct: 699 IGIFKIVKEEGIGSGTRRILAVTGKEAFEAYRQEEEDLKAIAETLKVPQLKEVTKKVVSL 758

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+  KLQ  +A+ K +              +   + F++  ++  D+  L++  D  ++
Sbjct: 759 QEQLHKLQKENAELKEKAAAAQAGDVFKDVKEANGLRFIASQVTVSDAGALRTFADNWKQ 818

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++L     EK   ++   ++D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 819 KDYSDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKTLAPIVS-GRGGGKPDMAMAG 873

Query: 879 GPNGNKADQAIAGVASFL 896
           G +  K    +A VA  L
Sbjct: 874 GSDAAKIADLLAAVAENL 891


>gi|77410746|ref|ZP_00787105.1| alanyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|77163282|gb|EAO74234.1| alanyl-tRNA synthetase [Streptococcus agalactiae CJB111]
          Length = 872

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/918 (34%), Positives = 490/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLTQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F        
Sbjct: 413 EDAGYK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 462 ----------------DYGADSLESNLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  + + K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  L
Sbjct: 855 GSDASKIAELLAAVAENL 872


>gi|288904885|ref|YP_003430107.1| alanyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|288731611|emb|CBI13166.1| alanyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
          Length = 872

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/918 (35%), Positives = 490/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L+ L     + + G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G   ID   F  A++EQ+ RARA+ +  GS   +    +L      + F  Y+    
Sbjct: 413 EDKGFK-IDHAGFEAAMKEQQERARANVVKGGSMGMQN--ETLSSITEESVFS-YED--- 465

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + S +  I+   E  E    GQ   +VF +TPFYAE G
Sbjct: 466 --------------------EVLDSTLSVIIADNERTEAVSEGQ-ALLVFAKTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D   +       +KA      H +     L    +  L ID + R ++ 
Sbjct: 505 GQVADHGVIKNDKGDIVARVTDVQKAPNGQALHTVDVLSSLSVGTTYTLEIDSKRRHRVI 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PV T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T E
Sbjct: 625 NAIPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+T + A      ++E LK++A+ LKV Q   V  +V  +
Sbjct: 680 IGIFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+  KLQ  +A+ K +              +   V +++  ++  D+  L++  D  ++
Sbjct: 740 QEQLHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++L     EK   ++   ++D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G +  K    +A VA  L
Sbjct: 855 GSDAAKIADLLAAVAENL 872


>gi|306830937|ref|ZP_07464099.1| alanine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426960|gb|EFM30070.1| alanine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 888

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 490/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 17  MKQLTSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 76

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  +
Sbjct: 77  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPE 132

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 133 WFDFPKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 188

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 189 FDRGEDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 248

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 249 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIG 308

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 309 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFI 368

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L+ L     + + G   FKLYDT+G P+++ +++ 
Sbjct: 369 EKIVKREEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELA 428

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G   ID   F  A++EQ+ RARA+ +  GS   +    +L      + F  Y+    
Sbjct: 429 EDKGFK-IDHAGFEAAMKEQQERARANVVKGGSMGMQN--ETLSSITEESVFS-YED--- 481

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + S +  I+   +  E    GQ   +VF +TPFYAE G
Sbjct: 482 --------------------EVLDSTLSVIIADNKRTEAVSEGQ-ALLVFAKTPFYAEMG 520

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D   +       +KA      H +     L    +  L ID + R ++ 
Sbjct: 521 GQVADHGMIKNDKGDIVARVTDVQKAPNGQALHTVDVLASLSVGTTYTLEIDSKRRHRVI 580

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I 
Sbjct: 581 KNHTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIW 640

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PV T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T E
Sbjct: 641 NAIPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAE 695

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+T + A      ++E LK++A+ LKV Q   V  +V  +
Sbjct: 696 IGIFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASL 755

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+  KLQ  +A+ K +              +   V +++  ++  D+  L++  D  ++
Sbjct: 756 QEQLHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQ 815

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++L     EK   ++   ++D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 816 KDYSDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAG 870

Query: 879 GPNGNKADQAIAGVASFL 896
           G +  K    +A VA  L
Sbjct: 871 GSDAAKIADLLAAVAENL 888


>gi|296270020|ref|YP_003652652.1| alanyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296092807|gb|ADG88759.1| alanyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 889

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/921 (34%), Positives = 491/921 (53%), Gaps = 63/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL FF++NGH ++PS+SL+   DPTL+  N+GMVPFK  F GQ+KP ++  
Sbjct: 1   MESAEIARRFLRFFEENGHTVVPSASLVAE-DPTLLLVNAGMVPFKPYFLGQQKPPFRRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH +FF+MLGNFSFG YFKE AI  AW+LLT+     
Sbjct: 60  TSLQKCVRTL----DIDEVGKTPRHASFFQMLGNFSFGDYFKEGAIPFAWELLTRPVSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + RL++TVY +D+EA ++W+K  G+ A++I R    DN+W M   GP GPCSEI+
Sbjct: 116 GFGFPEDRLWVTVYLDDDEAQEIWRK-VGVPAERIQRRGLADNYWHMGVPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   +  RY+E+WNLVFMQ +      + +      LP  +IDTGMGL
Sbjct: 175 YDRGPQY-GREGGPIADENRYLEVWNLVFMQEQLSAVRSKTDFDVAGPLPAKNIDTGMGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ERMA +LQ   N Y+ID    +I+ + ++T  +Y  +    +  RV+ DH+R+   L+ D
Sbjct: 234 ERMAAILQGVDNIYEIDTTSKIIKRAAELTETRYGRDERSDICLRVVADHMRAGVMLVGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP-ALCTEMGSAYPELIQAKLLI 347
           G+LP+NEGRGYVLRR++RR +   RLLG  E   M  L       M   YPEL   +  I
Sbjct: 294 GVLPSNEGRGYVLRRMLRRTIRNLRLLGAGEERYMRELTATTIEAMSGLYPELKTEEARI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
              + +E+  F  TL  G  + D  ++   +    +L+G+ AF+L+DT+G P+D+  ++ 
Sbjct: 354 HTVIEAEEASFLGTLRTGTAIFDAAVAETKRKGGTVLSGEQAFQLHDTYGFPIDLTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLR 464
             +GL  +D   F + ++EQR RA+A +    +G  +   FS + EK G   F+GYD   
Sbjct: 414 AEQGLK-VDEEGFRRLMQEQRERAKADAKAKKTGHADISVFSGILEKAGKIDFVGYDRT- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  ++  G  V  A  G  +E+V D+TPFYAE 
Sbjct: 472 ----------------------TAEATVVGLIVNGVSVPAAGEGTSLEIVLDRTPFYAEG 509

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQL D G     G  +++ DVQ   +G+ VH   V  G +         ID + RR +S
Sbjct: 510 GGQLADQGVIRTSGAEIEVLDVQSPIDGLIVHRGKVRSGEVLVGDQAHAEIDVERRRAIS 569

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +H+ATH++H      LG   +Q GS  +P   RFD T +  +  + L+ +ED VN ++ 
Sbjct: 570 RSHTATHMVHRGFRNALGESAAQAGSENSPGRFRFDFTSAGAVPPSVLRDVEDEVNAVLI 629

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +LPV     ++ +A A GA AL G KY D VRVV V     G +S  LCGGTHV+++G+
Sbjct: 630 NDLPVRAFYTSQAEARAMGALALFGEKYGDEVRVVEV-----GDYSRELCGGTHVATSGQ 684

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ I+ ESS+ AG+RR+EA+ G  A   L  +   +  L+  LK  +  +  R+E I 
Sbjct: 685 LGLIKILGESSVGAGVRRVEALVGLDAFRFLAKESVLVSQLSEQLKARREELPERIEGIV 744

Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
              R  +    + +    +            +  V+ ++H       + +L+ +   ++ 
Sbjct: 745 SRLRAAEKELERLRSAQVLAVAGELAAGARDVHGVSLVTHRAPDGTTADDLRKLALDVRG 804

Query: 819 KIQ---SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +     + ++++ G+   +   V+            A  L  ++AK LGGGG GGR  +A
Sbjct: 805 RFPADRAAVVVVAGVPANRPVVVVAANEAARERGVKAGQLVGVAAKALGGGG-GGRDDVA 863

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG      + A+  V + +
Sbjct: 864 QGGGSRPEAIEDALRAVEAAV 884


>gi|323127641|gb|ADX24938.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 872

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/912 (35%), Positives = 491/912 (53%), Gaps = 66/912 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  K F  
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPKWFGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W  + G+    +I +   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKEKLYMTYYPDDKDSYNRWISL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLER 232
                   G        E +RYIEIWN+V  QF    +    E   LP  +IDTG GLER
Sbjct: 177 TEFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIKEVEKLSGQTYDQDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVQTVGEIMASYYPEILEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L +   + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDQLLAQLKEAGKDTLEGKNIFKLYDTYGFPVELTEEMAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +    +L     ++ F+ Y+        
Sbjct: 417 YK-IDHDGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGITESSTFL-YE-------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T  V + +  I+   E  E    GQ   +VFDQTPFYAE GGQ+ 
Sbjct: 465 ---------------TETVDARLAVIIVDNERSEVVSEGQ-ALLVFDQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G        +    +  +KA      H +     L  +    L ID++ R  +  NH+
Sbjct: 509 DRGVIKNANGDIVARVIDVQKAPNGQALHTVDVLASLALDTVYTLDIDHKRRYAVEKNHT 568

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  I+G H +Q GS    + LRFD TH + +T  EL+ IE+ VN  I + L 
Sbjct: 569 ATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVTVDELRRIEEEVNQQIWKALA 628

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + T   + E A + GA AL G KY   VRVV +     G +S  LCGGTH+++T EI L 
Sbjct: 629 ITTTETDVETAKSMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLNNTSEIGLF 683

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            I+ E  I +G RRI A+TGQ+A      Q+  LK +A  LK  Q   V  +V  + E+ 
Sbjct: 684 KILKEEGIGSGTRRILAVTGQQAFESFRKQEYALKEIAHILKAPQMDQVPAKVVSLSEQL 743

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R LQ  +A+ K +              ++  + +++  +S  D+  L++  D  ++K  S
Sbjct: 744 RDLQKENAELKEKAAAAQAGDVFKEVKEVNGLRYIASQVSVSDAGALRTFADNWKQKDYS 803

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++LV    EK   ++   +++     +A ++ ++ A ++  G GGG+P MA +GG + 
Sbjct: 804 EVLVLVAAIGEKVNVLVASKSKE----VHAGNMIKVLAPIVS-GRGGGKPDMAMAGGSDA 858

Query: 883 NKADQAIAGVAS 894
           +K    +A V  
Sbjct: 859 SKISDLMAAVPE 870


>gi|210633873|ref|ZP_03297888.1| hypothetical protein COLSTE_01805 [Collinsella stercoris DSM 13279]
 gi|210159042|gb|EEA90013.1| hypothetical protein COLSTE_01805 [Collinsella stercoris DSM 13279]
          Length = 884

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/893 (37%), Positives = 494/893 (55%), Gaps = 46/893 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR+ +L FF+  G +L PSSSL+P +DP+L+  N+GM  FK  + G++       
Sbjct: 8   MTTAEIRSAYLNFFESKGCKLYPSSSLVP-DDPSLLLANAGMNQFKEFYQGKKVMKEIGA 66

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVR     ND+D +G   RH +FFEMLGNF+FGG  K +A   A++L+T+ F L 
Sbjct: 67  CSCQKCVRT----NDIDIIGADGRHASFFEMLGNFAFGGVTKGQACAWAYELITEVFKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TV+ ED+E   +W+ + G+  D I R+  +DNFW+   TGPCGPCSEI+FD GE
Sbjct: 123 KDRLYFTVFTEDDETEAVWRSL-GVEPDHITRLGEDDNFWAAGPTGPCGPCSEIYFDLGE 181

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G        + +R++E WNLVF QF++Q       LP  ++DTGMGLERMA ++Q 
Sbjct: 182 EVGCGCDTCAPGCDCDRFLEFWNLVFTQFDRQEDGSMPELPHRNLDTGMGLERMAAIMQH 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFLIADGILPANE 295
           K++ +D D+ + LI+  E ++G  Y  ++      + R+I DH RS +FLI+DG+LP NE
Sbjct: 242 KSSFFDGDVMQSLIKLGEDISGKTYVDDDYTGASRSLRIIADHARSVNFLISDGVLPGNE 301

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + RLLG  +  +   + A+   MG AYP L++   L++  + +E+
Sbjct: 302 GRGYVLRRLLRRAVFHGRLLGIEDAFLGRFIDAVNDVMGDAYPSLLENVGLVKGIVEAEE 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  TL+ G V LD  LS L + E L G  AF L+DT G P+D+  +I    G   +DI
Sbjct: 362 ERFSTTLNNGRVYLDEQLSALAEGEQLPGSAAFMLHDTFGFPIDLTVEIAEGAGH-AVDI 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN  + EQ++RARA + G   G+   +W  L ++  AT+F+GYD              
Sbjct: 421 EGFNAEMAEQKARARAAAKGDAWGSFNDVWTELADQLPATEFVGYDNESIEG-------- 472

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V AIV  GE VE A +  +  VV D+TP YAE GGQ+GD G   
Sbjct: 473 --------------AHVLAIVVNGERVERAENAAEAAVVLDRTPLYAEMGGQMGDHGLID 518

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  +  +++   K       H     G L    ++    D   R  L  NH+ATHLL  
Sbjct: 519 TDDAQFFVSNTTAKGGLYV--HEGKLIGALSEGDTVFAGYDLNRRGLLCRNHTATHLLDA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS ++P+ LRFD TH + +TS +++++ED VN+ I    PVVT++M 
Sbjct: 577 ALKEVLGDHVNQAGSLVSPENLRFDFTHFEAMTSEQIRAVEDLVNEQILAAQPVVTQVMG 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A ASGA AL G KY   V  V    E     S  LCGGTH  +T E+ L  IVSESS
Sbjct: 637 IDEAKASGAVALFGEKYGGVV-RVVSVGEGAEPFSRELCGGTHAKNTAELGLFKIVSESS 695

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
             + +RRIEA+T   A ++L  +    ++ A+ LK     V  RV  +  E R++     
Sbjct: 696 TGSNVRRIEAVTSTGAIAYLEERAALAETAAASLKCRVEEVPARVHALQAELREVNQKLK 755

Query: 776 KRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K         +     +   +     +   +S +++ +L++V D ++ K+ S    ++  
Sbjct: 756 KALTGGSSDAIASAIDAAVDMGGYQLVVAELSGLEAADLRNVWDTIRGKLSSACACVLAT 815

Query: 831 SKEKK--ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             EK   A +     +     F+A ++ +  A ++  G GGGRP MAQ+GG N
Sbjct: 816 VTEKGTPALIAAATDDAAAAGFHAGNVIKQIAPLV-DGRGGGRPTMAQAGGKN 867


>gi|325977827|ref|YP_004287543.1| alanyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177755|emb|CBZ47799.1| alaS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 872

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 490/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L+ L     + + G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G   ID   F  A++EQ+ RARA+ +  GS   +    +L      + F  Y+    
Sbjct: 413 EDKGFK-IDHAGFEAAMKEQQERARANVVKGGSMGMQN--ETLSSITEESVFS-YED--- 465

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + S +  I+   +  E    GQ   +VF +TPFYAE G
Sbjct: 466 --------------------EVLDSTLSVIIADNKRTEAVSEGQ-ALLVFAKTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D   +       +KA      H +     L    +  L ID + R ++ 
Sbjct: 505 GQVADHGMIKNDKGDIVARVTDVQKAPNGQALHTVDVLASLSVGTTYTLEIDSKRRHRVI 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PV T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T E
Sbjct: 625 NAIPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+T + A      ++E LK++A+ LKV Q   V  +V  +
Sbjct: 680 IGIFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+  KLQ  +A+ K +              +   V +++  ++  D+  L++  D  ++
Sbjct: 740 QEQLHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++L     EK   ++   ++D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G +  K    +A VA  L
Sbjct: 855 GSDAAKIADLLAAVAENL 872


>gi|312864541|ref|ZP_07724772.1| alanine--tRNA ligase [Streptococcus downei F0415]
 gi|311099668|gb|EFQ57881.1| alanine--tRNA ligase [Streptococcus downei F0415]
          Length = 873

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/918 (34%), Positives = 490/918 (53%), Gaps = 67/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVTPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF+++AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDQAIEWGYELLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FDL + +L++T Y +D++ +  W    G+ A  ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDLPKDKLFVTYYPDDKDTYNRWIA-CGMEASHMVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF    K   ++   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDHVGLKLLAEDIENDRYIEIWNIVLSQFNADPKLDRKDYQELPSKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +V+ DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIRKVEKLSGKTYDPDGDNMSFKVVADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVPTVGKIMESYYPEILEKQDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           ++ ++ E+E F +T+D G   L+ +L+ L  D  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 QKIVKREEETFARTIDAGTGHLEELLAQLKADGKDTLEGKDIFKLYDTYGFPVELTEEMA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G   ID   F  A++EQ+ RARA  +   S   +    +L      + F        
Sbjct: 413 QDKGYK-IDHAGFQAAMKEQQERARAAVVKGSSMGMQN--ETLAGIVEESTF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + S +  I+   + V+EA +GQ+  +VF +TPFYAE G
Sbjct: 462 ----------------SYEKEALDSSLSVIIVDNKRVQEAETGQEALLVFKETPFYAEMG 505

Query: 526 GQLGDTGCAIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G       ++       +KA      H +     L+   +  L ID++ R  + 
Sbjct: 506 GQVADKGDIQDKAGQVLARVLDVQKAPNGQALHKVELLADLQVGQTYHLEIDHKRRYAVE 565

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G+H +Q GS    + LRFD TH + +T+ EL+ IE+ VN  I 
Sbjct: 566 KNHTATHLLHAALHKVIGNHATQAGSLNEEEFLRFDFTHFEAVTAQELRRIEEEVNQQIW 625

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           Q + V T   + + A   GA AL G KY   VRVV +     G +S  LCGGTH+ +T E
Sbjct: 626 QAVAVKTIETDIDTAKEMGAMALFGQKYGKEVRVVMI-----GDYSIELCGGTHLGNTSE 680

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TGQ+A      Q++ LK +A+ LKV Q   V  +V  +
Sbjct: 681 IGLFKIVKEEGIGSGTRRILALTGQQAFEAFRKQEDALKKVAATLKVPQLEQVPAKVASL 740

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E  R LQ   A+ K +              + A   +++  +   D+  L++  D  ++
Sbjct: 741 NEANRDLQKEVAELKEKAAAAAAGDVFKDVKEAAGHRYIASQVQVSDAGALRTFADKWKQ 800

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
              S +++L     + K +VL+   +  +    A  L +  A ++  G GGG+P MA +G
Sbjct: 801 ADYSDVLVLAAAIGQ-KVNVLVASKDKAVP---AGKLIKELAPIVS-GRGGGKPDMAMAG 855

Query: 879 GPNGNKADQAIAGVASFL 896
           G   +     +  VA  L
Sbjct: 856 GSEPSAIQALLDAVADKL 873


>gi|295099596|emb|CBK88685.1| alanyl-tRNA synthetase [Eubacterium cylindroides T2-87]
          Length = 875

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/915 (34%), Positives = 487/915 (53%), Gaps = 62/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL++F+  GH + P +SL+P NDPTL++ N+G+   K  F G EKP  
Sbjct: 1   MKYLTGNQVRQMFLDYFKSKGHMIEPGASLVPNNDPTLLWINAGVAALKKYFDGSEKPRC 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  +
Sbjct: 61  NRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSEE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D+ +LY++VY +D++A+K+W ++  +    I++  T DNFW + + GP GP SEIF
Sbjct: 117 WMGIDKDKLYVSVYTDDDQAYKIWTEVCKVDPSHILK--TYDNFWEIGK-GPGGPDSEIF 173

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           FD+GE                E +RY+E+WN+VF Q++   +   ++   LP+ +IDTGM
Sbjct: 174 FDRGEKYDPEGLGEKLFFEEMENDRYVEVWNVVFSQYDCDPELDRKDYKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+  ++Q+   N+D DLF  +I A+E++    YEG   + +RVI DH+R+ +F ++D
Sbjct: 234 GLERLVALIQDGETNFDTDLFLPIIHATEKLAKYPYEGEYKMAYRVIADHIRTLTFALSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G   +N GRGYVLRR++RRA+ +   LG  +  +  L+P +   M   YP L +     +
Sbjct: 294 GANFSNSGRGYVLRRVLRRAVRFGLKLGLEDAFLYKLVPVVADTMQDFYPYLQEHVEFNQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + ++ E++ F KTL  G  LLD  +S     + L+G+V FKLYDT+G P ++ Q+I    
Sbjct: 354 KLIKVEEDTFKKTLKNGQALLDEEISKAKDGK-LSGEVVFKLYDTYGFPFELTQEIASES 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL       F+  + +Q+ RAR       S  T+     L      + FIGYD +     
Sbjct: 413 GLEVS-REEFDVEMNKQKERARNARNTKDSFATQNA--ELMNFTQESTFIGYDHME---- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                  + A+ + G +V+      + +V+ D T FYAE+GGQ+
Sbjct: 466 -------------------CDGKIIALFKDGHMVDTLS--DEGQVILDTTCFYAESGGQV 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    DG+  ++TDVQK      +H   +E GIL   MSL   +D   R+  + NHS
Sbjct: 505 ADAGTLSADGVMCKVTDVQKARNKQHIHSVEIESGILEVGMSLHCHVDEAKRKATTANHS 564

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THLL  AL  ++G H+ Q GS +  + LRFD  H + +T+ +L  IED VN  IA   P
Sbjct: 565 CTHLLQSALKEVVGEHIHQAGSYVCDEYLRFDFNHFEKLTTKQLDEIEDLVNQYIAGAYP 624

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   IM+ E+A  SGA AL   KY DRVRVV++     G  S   C G HV +T +I L 
Sbjct: 625 VTKEIMDIEEAKKSGATALFNEKYGDRVRVVTM-----GDVSKEFCAGCHVENTSQIGLC 679

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEY 767
            I+SE SI +  RRI A TG +A      +   L+++A   K     N+  +V+  ++  
Sbjct: 680 KIISEESIGSDARRIVAKTGYQAYKECASEKNMLENIAISAKQKGIKNIDTKVDAAYQNM 739

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             LQ    + K Q+              +  VN +   +  +D+  LK ++  L+ K  +
Sbjct: 740 HALQKEIEQLKNQIFALKSNEWVNETVSLGSVNALIKKVEGMDAGALKDIVSNLKAKDPN 799

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I+   G     K   +    +D +    +A  L + +A++   G GGG+P MAQ+GG +
Sbjct: 800 -IVCFFGNVSNDKIVFVSGAGKDAVSKGVHAGQLVKKAAQLCS-GNGGGKPDMAQAGGKD 857

Query: 882 GNKADQAIAGVASFL 896
            +K ++A   + S L
Sbjct: 858 ISKLNEAFEAIKSEL 872


>gi|94990711|ref|YP_598811.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|205830225|sp|Q1JG77|SYA_STRPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94544219|gb|ABF34267.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 872

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/918 (34%), Positives = 491/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R  Q  +A+ K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  +
Sbjct: 855 GSDASKIAELLAAVAETV 872


>gi|15612227|ref|NP_223880.1| alanyl-tRNA synthetase [Helicobacter pylori J99]
 gi|6707753|sp|Q9ZJY5|SYA_HELPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|4155760|gb|AAD06738.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 847

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/891 (36%), Positives = 488/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++TG+ Y      + RV+ DH R+ +FL+A  +    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTGLDYASEFQPSFRVVADHARAVAFLLAQEVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNVHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L+HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFENCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTECLANALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + EA   Q+V V+ ++TPFYAE GG +GD G    D     +
Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKDNEEAAL 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLTKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + ++    + ++ ++   V 
Sbjct: 737 MDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHEKLLAIVF-KKENERITLACGV- 791

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           +++     A   A   A++L GG GGGR   A +GG +      A+    +
Sbjct: 792 KNVP--IKANAWANEVAQIL-GGKGGGRDDFASAGGKDIENLQAALNLAKN 839


>gi|76788418|ref|YP_329556.1| alanyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|123601966|sp|Q3K1P7|SYA_STRA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|76563475|gb|ABA46059.1| alanyl-tRNA synthetase [Streptococcus agalactiae A909]
          Length = 872

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/918 (34%), Positives = 488/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +  L
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTE-EL 411

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
                  ID   F  A++EQ+ RARA  +  GS   +    +L      ++F        
Sbjct: 412 AEDADYKIDHEGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRF-------- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 462 ----------------DYGADSLESNLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  + + K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  L
Sbjct: 855 GSDASKIAELLAAVAENL 872


>gi|306827097|ref|ZP_07460394.1| alanine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|304430731|gb|EFM33743.1| alanine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 872

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/918 (34%), Positives = 490/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSLD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y  + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R  Q  +A+ K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  +
Sbjct: 855 GSDASKIAELLAAVAETV 872


>gi|288801454|ref|ZP_06406907.1| tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331665|gb|EFC70150.1| tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 872

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/920 (33%), Positives = 489/920 (53%), Gaps = 77/920 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++ +FF   GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  +  
Sbjct: 1   MTANEIRESYKQFFASKGHTIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     LD
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAIDYAWEYLVDVLHLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY+TV++         D++A   W+K   L  D II    +DNFW M +TGPCGPCS
Sbjct: 121 PKDLYVTVFEGSKEDNIARDDDAASFWRK--HLPEDHIINGNKHDNFWEMGDTGPCGPCS 178

Query: 174 EIFFD-QGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D +         G    +++  + IEIWN+VFMQF +++      L    IDTGMG
Sbjct: 179 EIHLDSRTPEEKLKVKGSELVNKDDPQVIEIWNIVFMQFNRKSDGSLEPLSMNVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   LQ K +NYD D+F+ +I+   +++   Y  +N   V  RVI DHLR+ +F IA
Sbjct: 239 FERLVRALQGKNSNYDTDIFQPIIKEICKLSHKNYGEDNAVDVAMRVIADHLRAVAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   E  +  L+P L  EMG AYPEL   + L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAIRYAYTFLHQREAFIYRLIPTLIAEMGQAYPELTAQREL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I   ++ E++ F +TL++G+ +L+  +          L+G  AF+L+DT+G PLD+ + I
Sbjct: 359 IGRVIKEEEDSFLRTLEKGISMLNDAIEVLKKEGKSELDGVQAFRLFDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
                   ++   F++ + +Q+ RAR  ++          W  L    G  QF+GYD   
Sbjct: 419 CREH-QITVNAEQFDEEMRKQKERARNAAV-----VESTDWVELAA--GEQQFVGYDYTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R+V  +K                                E+V + TPFY E 
Sbjct: 471 YECQILRYRQVTQKKNTY----------------------------FELVLNNTPFYGEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G  + +   ++I D +++          V+      + S +  +D  NR   +
Sbjct: 503 GGQVGDKGVLVNEDETIEIIDTKRENGQSIHI---VKTLPKDVKASFMACVDTDNRNASA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHL+ +AL  +LG HV Q GS ++ + LRFD +H + +T  +L+ +E  VN +I 
Sbjct: 560 ANHTATHLVDYALKQVLGDHVEQKGSYVSTESLRFDFSHFQKVTDEQLREVERLVNQLIR 619

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           ++ P+   R    E+A   GA ++ G KY D+VRVV          S   CGG H +STG
Sbjct: 620 EDYPMDEHRDTPIEEAREMGAVSIFGEKYGDKVRVVRFGP------SCEFCGGIHATSTG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            + +  IV+E+S+ AG+RRIEAITG+     +   ++ ++++ +    +  ++ G VE+ 
Sbjct: 674 RLGMFKIVTETSVAAGVRRIEAITGENCEELVYSLEDTIRAVKALFN-NTKDLKGAVEKF 732

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            EE   ++    K K Q NVE L         +   +  ++ ++  +D+ + K ++  ++
Sbjct: 733 IEENEAMKKEVEKFKAQ-NVERLKEFLLKGAKQQNGITIVTGVLP-IDASDAKDLVFKVR 790

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +   S ++ ++G +   K  + +++++DL+     NA  + R +AK++ GG GGG+PH A
Sbjct: 791 EANPSHLLCVIGTTAGNKPLLSVMLSDDLVKEHNLNAGAMIREAAKLIKGG-GGGQPHYA 849

Query: 876 QSGGPNGNKADQAIAGVASF 895
            +GG +    + AI  V   
Sbjct: 850 SAGGKDLEGLNAAIEKVIEL 869


>gi|169350062|ref|ZP_02867000.1| hypothetical protein CLOSPI_00802 [Clostridium spiroforme DSM 1552]
 gi|169293275|gb|EDS75408.1| hypothetical protein CLOSPI_00802 [Clostridium spiroforme DSM 1552]
          Length = 869

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/914 (36%), Positives = 502/914 (54%), Gaps = 65/914 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF+  GH++ PS SLIP +DPTL++ N+G+   K  F G  KP  
Sbjct: 1   MKQLTGNQVRKMFLDFFESKGHKVEPSHSLIPNDDPTLLWINAGVAALKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+LLT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIDFAWELLTDEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D+ +LYITV+D DEEA+  W  + G+    +++  T  NFW + E GPCGP SEIF
Sbjct: 117 WFAFDKDKLYITVHDHDEEAYNYWVDVIGVEPSHMLK--TPGNFWEIGE-GPCGPDSEIF 173

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           +D+GE                E +RYIEIWNLVF Q+  Q      +   LP+ +IDTGM
Sbjct: 174 YDRGEKYDPEGLGLKLFYEELENDRYIEIWNLVFSQYNSQEGVDRNDYEELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+ +++Q+   N+D D F  +I  +E++  + Y   N + +RVI DH+R+ +F +AD
Sbjct: 234 GLERITSIIQDGETNFDTDFFLPIIHEAEKLANVSY-QENKMAYRVIADHIRTVTFALAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G L  N GRGYVLRRI+RRA+ Y + +G  +  M +L+  +   M   Y  L +    I 
Sbjct: 293 GALFDNAGRGYVLRRILRRAVRYGKQIGIEKAFMYNLVGVVSEIMKEFYDYLPEKVSYIS 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + ++ E+E F KTL  G  LL G++     D I++G  AFKLYDT+G P ++  +I    
Sbjct: 353 DLVKKEEEAFHKTLSNGEKLLSGLIKK-NSDGIISGKDAFKLYDTYGFPFELTLEIAQES 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            L  +D   F + L+ Q+ R+R   +   S T++K    L      + F  YD       
Sbjct: 412 NLK-VDEEGFKEELKLQQMRSRGARVDNESMTSQK--PDLMAFDLPSSFE-YDPT----- 462

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +  +V  + + G   ++       E+VFD T FYAE GGQ 
Sbjct: 463 ------------------NIRGVVIGLFKDGVKTDQL--NDYGEIVFDVTTFYAEMGGQC 502

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    D  + ++ +V K      +H   +E G ++    L L ID + R +++ NH+
Sbjct: 503 ADTGIVYNDECKAKVVNVLKAPNQQHLHFVELESGSIKVGDVLTLEIDKEKRGKITANHT 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+L  AL  ++GSH++Q GS +  + LRFD TH + IT+ +LK++E  VND+I + + 
Sbjct: 563 ATHILQAALKEVIGSHINQAGSYVDDNRLRFDFTHFEKITNEQLKAVEQKVNDVIFKGID 622

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V    M++E+A+ASGA AL   KY D VRVVSV     G +S  LCGG HV+++  I L 
Sbjct: 623 VEIANMSKEEALASGAMALFDEKYGDTVRVVSV-----GNYSKELCGGCHVTNSSNIGLF 677

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767
            I +E S+ +GIRRIEA+TG+ A   L+ + E + +++S LK+ ++  VV +V  + EE 
Sbjct: 678 KIETEESVGSGIRRIEAVTGKIAYEALVLEKETVDTISSILKLKNRKEVVNKVTSLTEEL 737

Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             ++        +LN  + +        I  V  +     +++S + K +   L+ KI S
Sbjct: 738 NAVKKEVEALNSKLNALNAANRMNDIQDINGVKVLFVE-EDMESNKAKQLAFDLRDKIDS 796

Query: 823 GIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           GI++LV   +E K S  + V++D +     A D+ +    ++  G GGG+P  AQ G P 
Sbjct: 797 GIVILVSKFEE-KCSYFVGVSKDYVASGIKAGDVVKKINAIV-DGRGGGKPDFAQGGCPV 854

Query: 882 GNKADQAIAGVASF 895
             K D     + +F
Sbjct: 855 NEKIDTIKDELKNF 868


>gi|269959066|ref|YP_003328855.1| alanyl-tRNA synthetase [Anaplasma centrale str. Israel]
 gi|269848897|gb|ACZ49541.1| alanyl-tRNA synthetase [Anaplasma centrale str. Israel]
          Length = 882

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/910 (41%), Positives = 513/910 (56%), Gaps = 54/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++SSIR  FLEFF KNGH+L  S+ L+   D +L+FT++GMVPFK  FT G      +  
Sbjct: 5   SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L 
Sbjct: 65  VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITVY ED+EAF +WKKI+G   D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS   +G R+ E+WNLVFMQF +    E   LP   IDTGMGLER A V+Q  
Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYD DLFK +I+ S+ V G      N + HRVI DH+R+++FLI++G+LP NEGR YV
Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSPD---NSIAHRVIADHIRAAAFLISEGLLPGNEGRNYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355
           LRRI+RRA+ YA  L  +   +  +LP L  E     MG AYPEL++ +  I  TLRSE 
Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F  TL RG+ LL   +  L   ++L GDVAFKLYDT G PLDI  DI   RGL   D 
Sbjct: 362 EGFVDTLRRGMALLAKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ + EQ+ R+R H +G G   + ++W  L+ ++  T+F+GYD              
Sbjct: 421 EGFNKGMGEQKERSRRHWVGSGEDASHRLWEELQAQHKNTRFVGYDC------------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V +I + G  V+   SG+K  ++ D +PFYAE+GGQ GD G   
Sbjct: 468 ----------CSTKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSIT 517

Query: 536 GDGI-------RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G           +      +KA  + +H   +  G+     ++   ID   R +L  NHS
Sbjct: 518 GVSGVNNSGGANIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH  L T +  ++ Q GS +  D LRFD  ++  +T  ++  IE  VN  I  N P
Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQIALIEREVNRRIMSNKP 637

Query: 649 VVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V+T   + E A+  GA AL G KY    VRVVS+        S  LCGGTHV  TG+I  
Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMGD------SKELCGGTHVRYTGDIGA 691

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES I  G+RRIEAITGQ     L    + L  ++  L V  G V   +E + +E 
Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEVSEGLERLLKEK 751

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +L+        ++    +S       V         +    +   M + + K + GI  
Sbjct: 752 LELKKKLVCAWHEIIKSSISPVNCGAGVVLHCGYFPTIPVDAIMEFMKSAR-KAERGIFA 810

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  + + KA ++I V +       A DL +  A +   G GGG   +A+          
Sbjct: 811 -IATAVDGKAVLIIGVGDTASKVLGASDLVKTLADL--QGKGGGNAGLARVS-LEVGNVQ 866

Query: 887 QAIAGVASFL 896
           +A++ + + +
Sbjct: 867 EALSTILNKV 876


>gi|77413130|ref|ZP_00789330.1| alanyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77160831|gb|EAO71942.1| alanyl-tRNA synthetase [Streptococcus agalactiae 515]
          Length = 872

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 492/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWXIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDNIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNXNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R LQ  + + K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  L
Sbjct: 855 GSDASKIAELLAAVAENL 872


>gi|322517303|ref|ZP_08070179.1| alanine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322124086|gb|EFX95636.1| alanine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 872

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/916 (35%), Positives = 489/916 (53%), Gaps = 68/916 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS +F I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L++L K     L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKGTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+ Y+    
Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQERARASVVKGGSMGMQN--ETLANITEPSEFL-YE---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  IV      +   SGQ   +VF+QTPFYAE G
Sbjct: 465 -------------------AETAESHLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G        +    V  ++A      H +   G L    +  L ID+  R ++ 
Sbjct: 505 GQVADHGTISDAAGTVVARVVDVQRAPNGQALHTVEVEGELVVGANYKLEIDHTRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +  PV T   + + A + GA AL G KY   VRVVS+     G +S  LCGGTHV++T E
Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+T + A      +++ LK++A+ LK  Q   V  +V  +
Sbjct: 680 IGMFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+   LQ  +A  K +              +   V +++  +   D+  L++  D  ++
Sbjct: 740 QEQLHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
              S +++L     E K +VL+          +A ++ ++ A ++  G GGG+P MA +G
Sbjct: 800 ADYSDVLVLAAHIGE-KVNVLVASK---SKGVHAGNVIKVLAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVAS 894
           G + N     ++ VA 
Sbjct: 855 GSDANGIQDLLSAVAE 870


>gi|161506983|ref|YP_001576937.1| alanyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
 gi|205830127|sp|A8YTJ0|SYA_LACH4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160347972|gb|ABX26646.1| Alanyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
          Length = 879

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/920 (34%), Positives = 490/920 (53%), Gaps = 64/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +D ++ ++W+K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLPKEKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E++T   KY     +    ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA  + + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E++RF  TLD GL LLD ++       D+ ++G  AFK++DT+G P ++  +   
Sbjct: 353 NVIQNEEKRFQATLDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S   + +  +L      + F         
Sbjct: 413 DAGLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           D      + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 461 --------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL ID + R  L  
Sbjct: 506 QVADHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDLILPMEKGKEYVLKIDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTH S+T +I
Sbjct: 626 AIDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHCSNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SES++ AG+RRIEA+T ++A  +L  +   L  + + +K     N++ +++ + 
Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQADVKATKPDNIIDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +    Q        Q+N            +  D+  ++ +       +L+ + D  +  
Sbjct: 741 SDLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMNDLRELADNWKSG 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L     + KA+++I +  + L     A DL +  A + GGGG GGRP+MAQ+G
Sbjct: 801 NKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKVAPIFGGGG-GGRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G      + AI  V   + K
Sbjct: 859 GKRPEGLNDAIKAVIEEISK 878


>gi|218281062|ref|ZP_03487629.1| hypothetical protein EUBIFOR_00188 [Eubacterium biforme DSM 3989]
 gi|218217684|gb|EEC91222.1| hypothetical protein EUBIFOR_00188 [Eubacterium biforme DSM 3989]
          Length = 876

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/916 (35%), Positives = 484/916 (52%), Gaps = 61/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL++F+  GH + P +SLIP NDPTL++ N+G+   K  F G EKP  
Sbjct: 1   MKQLTGNQIRQMFLDYFKSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEKPAS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVGRT RHHTFFEMLGNFS G YFK+ AIQ AW+ LT  +
Sbjct: 61  NRIANAQKSIRT----NDIENVGRTARHHTFFEMLGNFSIGDYFKDEAIQFAWEFLTSEE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D+ RLY++VY +D  A+++W  I G+    I++  T+DNFW + + GP GP SEIF
Sbjct: 117 WMGIDKDRLYVSVYTDDARAYEVWTTICGVDPSHILK--TDDNFWEIGK-GPGGPDSEIF 173

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           FD+GE                E +RY+E+WN+VF Q++       ++   LP+ +IDTGM
Sbjct: 174 FDRGEKYDPEGLGEKLFFDEMENDRYVEVWNVVFSQYDCDPSIDRKDYKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+  ++Q+   N+D DLF  +I+A+E +    YEG   + +RVI DH+R+ +F ++D
Sbjct: 234 GLERLVALVQDGETNFDTDLFLPIIRATEAMAKHPYEGEYKMAYRVIADHVRTVTFALSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G   +N GRGYVLRR++RRA+ Y   LG  EP +  L+P +   M   YP L +     +
Sbjct: 294 GANFSNSGRGYVLRRVLRRAVRYGLKLGLDEPFLYKLVPVVADLMEDFYPYLQEHVEFNQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + ++ E+E F KTL  G  LLD  +S     + L+G+V FKLYDT+G P ++ Q+I    
Sbjct: 354 KLIKVEEETFKKTLKVGQALLDDEISKAKDGK-LSGEVVFKLYDTYGFPFELTQEIAEES 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+       F+  + +Q+ RAR       S  ++     L      ++FIGYD L     
Sbjct: 413 GITVS-HEDFDAQMNKQKERARNARNVKDSFASQN--EELMNFNEPSEFIGYDHL----- 464

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                  + A+   +G++V+      +  ++ D+T FYAE+GGQ
Sbjct: 465 ------------------TCDGKIIALFNAEGKMVDSLE--DEGMIILDKTCFYAESGGQ 504

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G    DG+ +++ DVQK      +H   +  G+L   MSL   ++ ++R   + NH
Sbjct: 505 VADKGTFSADGVDVEVLDVQKTRNKQHIHTVKINGGVLEKGMSLHGEVNVKDRLATTANH 564

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  AL  +LG H+ Q GS   P+ LRFD  H + +T+ +L  +E  VN+ I+   
Sbjct: 565 SCTHLLQSALVKVLGDHIHQAGSYNCPEYLRFDFNHYEKVTAEQLAEVERIVNEYISAAY 624

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV   IM  E+A  SGA AL   KY D VRVV++     G  S   C G HV +T +I L
Sbjct: 625 PVTKEIMPIEEAKKSGATALFDEKYGDTVRVVTM-----GDVSKEFCAGCHVENTAQIGL 679

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766
             I+SE SI +  RRI A T   A      +   L+++A   K     N+  +VE  ++ 
Sbjct: 680 CKIISEESIGSDSRRITAKTKFAAYQDFASEHAMLENIADSAKQKGIKNIDTKVEAAYKT 739

Query: 767 YRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              +Q      K     L+             VN +   +S +D+  LK ++  L+    
Sbjct: 740 MHDMQKEIDNLKNQIFTLKSKEWATEAKDFGKVNVLIKSVSGMDAGALKDIVSNLKANDD 799

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++  V  + EK   V     E +    +A  L + +A++   G GGG+P MAQ+GG +
Sbjct: 800 KMVVFFVNTNGEKVVFVSGAGKEAVKAGVHAGQLVKKAAQICS-GNGGGKPDMAQAGGKD 858

Query: 882 GNKADQAIAGVASFLK 897
            +K D+AI  +   LK
Sbjct: 859 ASKVDEAINAITEELK 874


>gi|126434971|ref|YP_001070662.1| alanyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|205830155|sp|A3PZ44|SYA_MYCSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126234771|gb|ABN98171.1| alanyl-tRNA synthetase [Mycobacterium sp. JLS]
          Length = 897

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/913 (33%), Positives = 461/913 (50%), Gaps = 69/913 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P YQ  
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYQRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVDQS 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L+ TVY +D+EA +LW++++GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGFDPEKLWATVYLDDDEAIQLWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
            D+G          + E  RYIEIWNLVFMQ E+         +    LP+ +IDTGMG+
Sbjct: 176 VDRGPEYGIEGGPEANED-RYIEIWNLVFMQNERGEGTGKSDFEILGPLPRKNIDTGMGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ DL + +I A        Y     ++ V +R+I DH R+++ LI 
Sbjct: 235 ERVACLLQGVDNVYETDLLRPVIDAVAARAPRGYGRGSHSDDVRYRIIADHSRTAAILIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  A+LLG  + ++  L+  +   MG +YPEL+     I
Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDDAVVGDLMATVRDAMGPSYPELVTDFDRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           +    +E+  F +TL  G  L +           + L+G  AF L+DT+G P+++  ++ 
Sbjct: 355 QRIAVAEETAFNRTLSSGSRLFEEAAQSTKAAGADRLSGRDAFTLHDTYGFPIELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
               L  +D   F   + EQR RA+A +       T+   +        TQF G+D L  
Sbjct: 415 AEADL-AVDEEGFRSLMAEQRQRAKADAAARKQAHTDLTAYRELVDAHPTQFTGFDEL-- 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV-----EEAVSGQKVEVVFDQTPF 520
                                   + +  I   G  V     + A +  ++E+V D++PF
Sbjct: 472 ---------------------TTEARILGIFVDGRRVPVVGHDTATAQHRIELVLDRSPF 510

Query: 521 YAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           YAE+GGQ+ D G   G       +  ++DVQK A+ ++VH   VE G      ++   +D
Sbjct: 511 YAESGGQIADEGTITGTGASQTAKAAVSDVQKIAKTLWVHRVTVESGEFVEGDTVTAAVD 570

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R   +  HS TH++H AL  +LG +  Q GS   P  LRFD      +T  +   IE
Sbjct: 571 PRWRHGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRTQIE 630

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N+ +  +  V +     E A + GA AL G  Y D VRVV +    GG  S  LCGG
Sbjct: 631 EVTNEAVEADFEVHSFTTELEKAKSMGAMALFGEAYPDEVRVVEI----GGPFSLELCGG 686

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV S+ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V
Sbjct: 687 THVRSSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 746

Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810
             RV  + E  +  +    + +L               ++  V  ++  ++  + + +L+
Sbjct: 747 PARVAGLVERLKAAEKELDRMRLANARAAAVNAVAGAERVGKVRLVAQRMAGGMSAGDLR 806

Query: 811 SVMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
           +++  ++ K+     ++ L+          ++ V     D    A +L +     +  G 
Sbjct: 807 TLVGDIRGKLGGDPAVVALIAEGDNDTVPFVVAVNPAAQDLGLRANELVKQFGAAVN-GR 865

Query: 868 GGGRPHMAQSGGP 880
           GGG+  +AQ  G 
Sbjct: 866 GGGKADLAQGSGK 878


>gi|327461590|gb|EGF07921.1| alanine--tRNA ligase [Streptococcus sanguinis SK1]
 gi|327489449|gb|EGF21242.1| alanine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 872

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/915 (35%), Positives = 492/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F           
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESVF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ + AIV     VE   SG    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      +KA      H +     L    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLDPLALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPDLLAAVAEKL 872


>gi|108799313|ref|YP_639510.1| alanyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119868429|ref|YP_938381.1| alanyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|123178848|sp|Q1B9I0|SYA_MYCSS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830156|sp|A1UFI3|SYA_MYCSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|108769732|gb|ABG08454.1| alanyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119694518|gb|ABL91591.1| alanyl-tRNA synthetase [Mycobacterium sp. KMS]
          Length = 897

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/913 (33%), Positives = 461/913 (50%), Gaps = 69/913 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P YQ  
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYQRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L+ TVY +D+EA +LW++++GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGFDPEKLWATVYLDDDEAIQLWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
            D+G          + E  RYIEIWNLVFMQ E+         +    LP+ +IDTGMG+
Sbjct: 176 VDRGPEYGIEGGPEANED-RYIEIWNLVFMQNERGEGTGKSDFEILGPLPRKNIDTGMGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ DL + +I A        Y     ++ V +R+I DH R+++ LI 
Sbjct: 235 ERVACLLQGVDNVYETDLLRPVIDAVAARAPRGYGRGSHSDDVRYRIIADHSRTAAILIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  A+LLG  + ++  L+  +   MG +YPEL+     I
Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDDAVVGDLMATVRDAMGPSYPELVTDFDRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           +    +E+  F +TL  G  L +           + L+G  AF L+DT+G P+++  ++ 
Sbjct: 355 QRIAVAEETAFNRTLSSGSRLFEEAAQSTKAAGADRLSGRDAFTLHDTYGFPIELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
               L  +D   F   + EQR RA+A +       T+   +        TQF G+D L  
Sbjct: 415 AEADL-AVDEEGFRSLMAEQRQRAKADAAARKQAHTDLTAYRELVDAHPTQFTGFDEL-- 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV-----EEAVSGQKVEVVFDQTPF 520
                                   + +  I   G  V     + A +  ++E+V D++PF
Sbjct: 472 ---------------------TTEARILGIFVDGRRVPVVGHDTATAQHRIELVLDRSPF 510

Query: 521 YAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           YAE+GGQ+ D G   G       +  ++DVQK A+ ++VH   VE G      ++   +D
Sbjct: 511 YAESGGQIADEGTITGTGASQTAKAAVSDVQKIAKTLWVHRVTVESGEFVEGDTVTAAVD 570

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R   +  HS TH++H AL  +LG +  Q GS   P  LRFD      +T  +   IE
Sbjct: 571 PRWRHGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRTQIE 630

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N+ +  +  V +     E A + GA AL G  Y D VRVV +    GG  S  LCGG
Sbjct: 631 EVTNEAVEADFEVHSFTTELEKAKSMGAMALFGEAYPDEVRVVEI----GGPFSLELCGG 686

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV S+ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V
Sbjct: 687 THVRSSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 746

Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810
             RV  + E  +  +    + +L               ++  V  ++  ++  + + +L+
Sbjct: 747 PARVAGLVERLKAAEKELDRMRLANARAAAVNAVAGAERVGKVRLVAQRMAGGMSAGDLR 806

Query: 811 SVMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
           +++  ++ K+     ++ L+          ++ V     D    A +L +     +  G 
Sbjct: 807 TLVGDIRGKLGGDPAVVALIAEGDNDTVPFVVAVNPAAQDLGLRANELVKQFGAAVN-GR 865

Query: 868 GGGRPHMAQSGGP 880
           GGG+  +AQ  G 
Sbjct: 866 GGGKADLAQGSGK 878


>gi|224064089|ref|XP_002186563.1| PREDICTED: alanyl-tRNA synthetase [Taeniopygia guttata]
          Length = 968

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/969 (32%), Positives = 481/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SSS IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASQIRQRFIDFFRENKHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA +LLTKE
Sbjct: 66  LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALELLTKE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +          D E  ++W  + GL+  +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLAEGRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGDRD-ASHLVNQDDPNVLEIWNLVFIQFNREADGTLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYLGQVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   L   +     L+  +   +G A+PE
Sbjct: 304 TITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+++F KTL RG  +LD  +  LG  +++ GD A+ LYDT+G P D
Sbjct: 364 LKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSLGDSKVIPGDTAWLLYDTYGFPAD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + +   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMEGFEE----ERKNAQLKSQGKGAGGEDLLMLDI-YAIEELRAQG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            ++   S                     + + VKAI ++ + VEE  +GQ+  +V D+T 
Sbjct: 478 LEVTDDSPK----YNYASDLSGTYDFGSLVATVKAIRREKKFVEEVSTGQECGIVLDRTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + LTI
Sbjct: 534 FYAEQGGQIYDQGYMVKDDDSREDKTEFTVKNVQVRGGYVLHIGTLYGSLKVGDQVHLTI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E+K +
Sbjct: 594 DEARRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGALSTQEIKKV 652

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E   N +I ++  V  +     +A    G  A+    Y D VRVVS+             
Sbjct: 653 EGIANQMIEESKTVYAKDCPLAEAKAIQGLRAVFDETYPDPVRVVSIGIPVEELLADPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDE 740
             G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  AR  L       +
Sbjct: 713 PGGSITSIEFCGGTHLQNSSHAGSFVIVSEEAIAKGIRRIVAVTGAEARKALRKVDSLRK 772

Query: 741 KLKSLASFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
            L +L + +KV      +V   + ++ E        +++K +L  A + L+  ++DL   
Sbjct: 773 LLSALEAKVKVQTAPNKDVQKEITDLGETLATAIIPQWQKDELREAVKALKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             AD+                     +  + +   +K L   +   +        ML  +
Sbjct: 833 SKADIQKRVLEKTKQVIESHPNQPWVIMEMENGASAKALNESLKLFKTNSPQTAAMLFAV 892

Query: 831 SKE-KKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  + + L  V ++       A    +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGRITCLCQVPQETANKGLKASQWVQEVSG-LMDGKGGGKDISAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +     F +
Sbjct: 952 LKLATDFAR 960


>gi|284801894|ref|YP_003413759.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284995036|ref|YP_003416804.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|284057456|gb|ADB68397.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060503|gb|ADB71442.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5923]
          Length = 832

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/869 (38%), Positives = 481/869 (55%), Gaps = 56/869 (6%)

Query: 46  FKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKER 105
            K  F G   P    +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE 
Sbjct: 1   MKKYFDGSVIPDNPRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEG 56

Query: 106 AIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM 163
           AI  AW+ LT  K    D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +
Sbjct: 57  AIVFAWEFLTSPKWIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDI 114

Query: 164 AETGPCGPCSEIFFDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFIL 219
              GP GP SEIF+D+G                E ERY+EIWNLVF QF          L
Sbjct: 115 G-IGPSGPDSEIFYDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPL 173

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVD 277
           PK +IDTGMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI D
Sbjct: 174 PKQNIDTGMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIAD 233

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H+R+ +F I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S Y
Sbjct: 234 HIRTVAFAIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFY 293

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHG 395
           PE+      I++ +R+E+ERF +TL+ GL +L+ +L  +    ++++ G   FKLYDT G
Sbjct: 294 PEVENQTDFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFG 353

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+++ ++     GL  +D   F   ++EQR+RARA    + S   +     L      +
Sbjct: 354 FPVELTEEYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKS 410

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            F+GY+                            S +  ++Q   +V+E  +G + +V+F
Sbjct: 411 AFVGYNSTEHV-----------------------SEILYLIQNDTLVDEVAAGNEAQVIF 447

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +TPFYAE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +
Sbjct: 448 KETPFYAESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAV 507

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR+   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +
Sbjct: 508 DRVKRRETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKM 567

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E+ VN+ I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCG
Sbjct: 568 EEIVNEKIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCG 622

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV +T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +   
Sbjct: 623 GVHVRNTADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKE 682

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELK 810
              +VE +  + R+++  +     +L     +       +I  V  ++  ++  D  +L+
Sbjct: 683 TPQKVELLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLR 742

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGG 869
             +D  + K   GI++L  +  + K +++  V+E+ +   ++A  L +  A    GG GG
Sbjct: 743 QFVDNWKDKKIGGILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGG 800

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GRP MAQ+GG N  +   A+  V++++K+
Sbjct: 801 GRPDMAQAGGKNPAELRTALDYVSTWVKE 829


>gi|56416520|ref|YP_153594.1| alanyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
 gi|81599193|sp|Q5PBJ0|SYA_ANAMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56387752|gb|AAV86339.1| alanyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
          Length = 882

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/910 (41%), Positives = 514/910 (56%), Gaps = 54/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++SSIR  FLEFF KNGH+L  S+ L+   D +L+FT++GMVPFK  FT G      +  
Sbjct: 5   SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L 
Sbjct: 65  VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITVY ED+EAF +WKKI+G   D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS   +G R+ E+WNLVFMQF +    E   LP   IDTGMGLER A V+Q  
Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYD DLFK +I+ S+ V G      N + HRVI DH+R+++FLI++G+ P NEGR YV
Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSPD---NSIAHRVIADHIRAAAFLISEGLSPGNEGRNYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355
           LRRI+RRA+ YA  L  +   +  +LP L  E     MG AYPEL++ +  I  TLRSE 
Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F  TL RG+ LL+  +  L   ++L GDVAFKLYDT G PLDI  DI   RGL   D 
Sbjct: 362 EGFVDTLRRGMALLEKEIGGLSPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ + EQ++R+R H +G G   + ++W  L+ ++  T+F+GYD              
Sbjct: 421 EGFNKGMGEQKARSRKHWVGSGEDASHRLWEELQAQHKNTRFVGYDC------------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V +I + G  V+   SG+K  ++ D +PFYAE+GGQ GD G   
Sbjct: 468 ----------CSTKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSIT 517

Query: 536 GDGI-------RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G           +      +KA  + +H   +  G+     ++   ID   R +L  NHS
Sbjct: 518 GVSGVKNSGGANIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH  L T +  ++ Q GS +  D LRFD  ++  +T  ++  IE  VN  I  N P
Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQIALIEREVNRRIMSNKP 637

Query: 649 VVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V+T   + E A+  GA AL G KY    VRVVS+        S  LCGGTHV  TG+I  
Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMGD------SKELCGGTHVRYTGDIGA 691

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES I  G+RRIEAITGQ     L    + L  ++  L V  G V   +E + +E 
Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEVSEGLERLLKEK 751

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +L+        ++    +S       V         +    +   M + + K + GI  
Sbjct: 752 LELKKKLVCAWHEIIKSSISPVNCGAGVVLHCGYFPTIPVDAIMEFMKSAR-KAERGIFA 810

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  + + KA ++I V +       A +L +  A +   G GGG   +A+          
Sbjct: 811 -IATAVDGKAVLIIGVGDTASKVLGASELVKTLADL--QGKGGGNAGLARVS-LEVGNVQ 866

Query: 887 QAIAGVASFL 896
           +A++ + + +
Sbjct: 867 EALSTILNKV 876


>gi|313124260|ref|YP_004034519.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312280823|gb|ADQ61542.1| Alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|325685733|gb|EGD27811.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 877

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/917 (35%), Positives = 484/917 (52%), Gaps = 62/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S  R  FL+FF ++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + +T+ QK +R     ND++NVG+T RH T FEMLGNFS G YFKE AI  AW+ LT   
Sbjct: 61  RRITSSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
             DLD+ +LY+TVY +D EA ++W ++ GL    I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLDLDKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF +F           P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVPEDDPENYPGGENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E+++   KY     +  + ++I DH+R+ SF I D
Sbjct: 234 RVLSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDTSFKIIADHIRAISFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP N GRGYVLRR++RRA    R LG     +  L+P +   M S YPE+      I 
Sbjct: 294 GALPGNTGRGYVLRRLLRRAALNGRKLGIAGAFLYKLVPVVGDIMKSHYPEVSDQAEFIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RFG TL+ GL LLD ++      +D+ ++G  AFK++DT+G P ++  +   
Sbjct: 354 KVIKNEEDRFGVTLEAGLTLLDDLIDKAEKSEDKTISGKDAFKMFDTYGFPYELTVEAAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +GL  +D   F+  +E Q+ RAR     L S  ++    +L +    + F         
Sbjct: 414 DKGLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQD--ETLMKIKDKSVF--------- 461

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+   ++V++A  G+K  ++FD+TPFYAE GG
Sbjct: 462 ---------------EYGVYEEESQLVDIIVDDKLVDKA-DGEKATLIFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     L    +  L ID   R  L  
Sbjct: 506 QVADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVILPLVKGQTYKLKIDRARREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T   PIT  ELK++E  VN+ I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           ++ V T   + E     GA AL   KY D+VRVV +        S   CGGTH  +T +I
Sbjct: 626 SIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQM-----DDFSIEFCGGTHCDNTSQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SE +I AG+RRIEA+T + A  +L G+ + L  + + +K     ++  ++  + 
Sbjct: 681 GVFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKAEDIQSKIASLQ 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE R  +  +A  K Q+N             + D+  ++ I       +L+ + D  + +
Sbjct: 741 EELRSAEKQNAAYKAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSE 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +S +++L   S++K   ++ +  + L     A DL +  A + GGGG GGRP+MAQ+GG
Sbjct: 801 GKSDVLILGAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIFGGGG-GGRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFL 896
                   AI    S L
Sbjct: 860 KKPEGLQDAIDAAVSQL 876


>gi|295425855|ref|ZP_06818535.1| alanine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
 gi|295064458|gb|EFG55386.1| alanine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
          Length = 879

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/920 (35%), Positives = 491/920 (53%), Gaps = 64/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF+  AI  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRNEAITWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD+ +LY TVY +D ++ K+W+K +G+  + I ++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLDKSKLYCTVYPKDIDSQKVWEK-AGMPKNHIFKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ    N++ DLF  +I A+E++T   KY     +    ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQGAPTNFETDLFLPIIHATEEMTPGKKYGVNKADTTAFKIIADHVRAVSFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNNGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF  TLD GL LLD +++      ++ ++G  AFKL+DT+G P ++  +   
Sbjct: 353 NVIQNEEERFQATLDSGLTLLDELIAKAKKSDNKTISGKDAFKLFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  ID   F++ ++ Q+ RAR     L S   + +  +L      ++F         
Sbjct: 413 DAGLK-IDKKGFDKEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSEF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV   ++V +A  G++  +VFD+TPFYAE GG
Sbjct: 461 --------------EYGKYEEDHAKLIDIVVNDKLVNKA-DGEEAILVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     L      VL ID + R  L  
Sbjct: 506 QVADHGNIYNQDGELVAKVTDVQHAPNDQNLHFVDIILPLEKGQEYVLKIDRERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I +
Sbjct: 566 SHTATHLLHAALRQVLGEHTHQAGSLVEPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T +   E+    GA AL   KY D+VRVV V     G  SS  CGGTH  +T +I
Sbjct: 626 AIQVKTTVTTPEEGKKMGALALFNGKYGDKVRVVQV-----GDFSSEFCGGTHCDNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SES++ AG+RRIEA+T ++A  +L  +   L  +   +K      ++ +++ + 
Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYEYLADRSTLLDDIQEHVKATKPDGIMDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                 Q        ++N         +  K  D+  ++         +L+ + D+ +  
Sbjct: 741 SSLHDAQKQIEDLTKKINQAKAGEIFDNVQKAGDLTVIAATADVSGMNDLRELADSWKSG 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L     + KA+++I + +  LD+   A DL + +A + GGGG GGRP+MAQ+G
Sbjct: 801 NKSDVLVLAA-KNDGKANMIISLNKKALDKGLKAGDLIKKAAPIFGGGG-GGRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G      D+AI  V S + K
Sbjct: 859 GKKPEGIDEAIKTVISEISK 878


>gi|222474888|ref|YP_002563303.1| alanyl-tRNA synthetase (alaS) [Anaplasma marginale str. Florida]
 gi|255002859|ref|ZP_05277823.1| alanyl-tRNA synthetase [Anaplasma marginale str. Puerto Rico]
 gi|222419024|gb|ACM49047.1| alanyl-tRNA synthetase (alaS) [Anaplasma marginale str. Florida]
          Length = 882

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/910 (41%), Positives = 514/910 (56%), Gaps = 54/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++SSIR  FLEFF KNGH+L  S+ L+   D +L+FT++GMVPFK  FT G      +  
Sbjct: 5   SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L 
Sbjct: 65  VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITVY ED+EAF +WKKI+G   D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS   +G R+ E+WNLVFMQF +    E   LP   IDTGMGLER A V+Q  
Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYD DLFK +I+ S+ V G     NN + HRVI DH+R+++FLI++G+ P NEGR YV
Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSP---NNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355
           LRRI+RRA+ YA  L  +   +  +LP L  E     MG AYPEL++ +  I  TLRSE 
Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F  TL RG+ LL+  +  L   ++L GDVAFKLYDT G PLDI  DI   RGL   D 
Sbjct: 362 EGFVDTLRRGMALLEKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ + EQ+ R+R H +G G   + ++W  L+ ++  T+F+GYD              
Sbjct: 421 EGFDKGMGEQKERSRKHWVGSGEDASHRLWEELQAQHKNTRFVGYDC------------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V +I + G  V+   SG++  ++ D +PFYAE+GGQ GD G   
Sbjct: 468 ----------CSTKASVLSITRDGMAVQSVNSGERACLLLDVSPFYAESGGQEGDKGSIT 517

Query: 536 GDGI-------RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G           +      +KA  + +H   +  G+     ++   ID   R +L  NHS
Sbjct: 518 GVSGVNNSGGVNIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH  L T +  ++ Q GS +  D LRFD  ++  +T  ++  IE  VN  I  N P
Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQITLIEREVNRRIMSNKP 637

Query: 649 VVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V+T   + E A+  GA AL G KY    VRVVS+        S  LCGGTHV  TG+I  
Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMGD------SKELCGGTHVRYTGDIGA 691

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES I  G+RRIEAITGQ     L    + L  ++  L V  G V   +E + +E 
Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEVSEGLERLLKEK 751

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +L+        ++    +S       V         +    +   M + + K + GI  
Sbjct: 752 LELKKKLVCAWHEIIKSSISPVNCGAGVVLHCGYFPTIPVDAIMEFMKSAR-KAERGIFA 810

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  + + KA ++I V +       A +L +  A +   G GGG   +A+          
Sbjct: 811 -IATAVDGKAVLIIGVGDTASKVLGASELVKTLADL--QGKGGGNAGLARVS-LEVGNVQ 866

Query: 887 QAIAGVASFL 896
           +A++ + + +
Sbjct: 867 EALSTILNKV 876


>gi|330466938|ref|YP_004404681.1| alanyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328809909|gb|AEB44081.1| alanyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 892

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/931 (35%), Positives = 498/931 (53%), Gaps = 74/931 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  +L  F+ NGH ++PS+ L   +DP L+F N+GMV F   F GQ+ P +   
Sbjct: 1   MKTAEIKRRYLAHFEANGHAVVPSAPLPAISDPNLLFVNAGMVQFVPYFLGQQSPPFPRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK+ AI  AWDL TK     
Sbjct: 61  VSVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDGAIPFAWDLATKSVEAG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY +D+EA+ +W   +G+ A++I+R    DNFWSM   GP GPCSE++
Sbjct: 117 GFGLDPERIWATVYLDDDEAYDIWL-HTGVPAERIVRRGKKDNFWSMGIPGPAGPCSELY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+E WNLVFMQ+E      ++  +    LPK +IDTGMGL
Sbjct: 176 YDRGPEY-GLEGGPEVDEDRYLEFWNLVFMQYEIADVRSKEEFRIVGELPKKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  + +++ + ++TG +Y             + V  RV+ DH+R
Sbjct: 235 ERMASILQGVDNLYEIDEVRPILERAAELTGKRYGAQSGQAANQSHPDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           ++  LI DG+ P+NEGRGYVLRRIMRRA+   RLLG+ E  +  LLP     M  +YPEL
Sbjct: 295 TALMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGWQERALPELLPVARDCMAPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398
                 I     +E++ F  TL  G  +LD  ++         L+GD AF+L+DT+G P+
Sbjct: 355 ATDFDRISAYAYAEEDAFLATLRAGTTILDTAITETKSAGKPALSGDKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +GL  +D   F + + +QR+RA+A +    +G T+   + S+ +  G   F
Sbjct: 415 DLTLEIAAEQGL-DVDQEGFRRLMADQRARAKADAQARKTGHTDLSAYRSVLDAGGPVTF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY                             S V+A++        AV G  VE+V D 
Sbjct: 474 TGYTET-----------------------ARESTVRAVLGTDGPRAAAVEGDMVELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R   +    ID 
Sbjct: 511 TPFYAEGGGQQPDLGMITVGGGQVEVLDVQQPVPGLIVHRARVIRGEVRAGETGYAEIDT 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD   +  +  + L+ +E 
Sbjct: 571 SRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTATGVAPSVLRDVEQ 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+++  +L V   + + ++A   GA AL G KY D+VRVV V     G ++  LCGGT
Sbjct: 631 QVNEVLLADLEVHAFVTSLDEARRIGAMALFGEKYGDQVRVVEV-----GDYARELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HVS +G++ L+ I+SESSI +G+RR+EA+ G  A + L  +   +  LA   +V    V 
Sbjct: 686 HVSRSGQLGLVKILSESSIGSGVRRVEALVGMDAFNFLAREHLLVSRLAELYRVPSEQVA 745

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVE--DLSCHKIADVNFMSHI----ISEVDSKELKS 811
            RVE+   + R  +    K + QL +        +  DV  ++++           ++++
Sbjct: 746 DRVEQTVTQLRDAEKELEKLRAQLVLGGAAAFAAQAKDVRGVAYVGIEAPEGAAGNDVRT 805

Query: 812 VMDALQKKIQ---SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867
           +   ++ +I     G++ +   S   KAS+++ V      R   A DL + +      G 
Sbjct: 806 LAQEIRGRIDAARPGVVAVASRSN-GKASLVVSVNPAARSRGLAANDLVKAAFS----GR 860

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGG P +AQ GG   ++    +  V   + +
Sbjct: 861 GGGSPDLAQGGGLPESEVPTLLLTVEKAIAE 891


>gi|194863135|ref|XP_001970293.1| GG23450 [Drosophila erecta]
 gi|190662160|gb|EDV59352.1| GG23450 [Drosophila erecta]
          Length = 966

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/973 (31%), Positives = 456/973 (46%), Gaps = 87/973 (8%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           M       +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P  
Sbjct: 1   MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 61  EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LTK   L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M E
Sbjct: 121 LTKRLALPKDRLYVTYFGGDEASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID
Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276
            GMG ER+ +V+Q K +NYD DLF  L  A +            G        + +RV+ 
Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGPDDVDGIDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVELLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G
Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ Q +   + L  ID+  +       +  +   S G G+   E+I   +       
Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +  G        F  +   V  ++         +S + A+  + + V E  SGQK  +V 
Sbjct: 474 E-QG-VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVL 531

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE+GGQ+ D G  +            +    G ++ H  +  G L+    L L 
Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGIVEGTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTDQKGSLVVPEKLRFDFNSKAAMTIEQVAK 651

Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682
            E    +++ +N+P+  +           G  ++    Y D VRV+S             
Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDDLEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771

Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAK---- 776
           + +   LK +                +V   E+I          +E R L     K    
Sbjct: 772 QEI-VRLKATIDTDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830

Query: 777 --RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826
             R L+  V      +         +   +   +   ++ K L + +  ++ ++     M
Sbjct: 831 KERALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K
Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNFEK 949

Query: 885 ADQAIAGVASFLK 897
            D+ +   + F +
Sbjct: 950 VDEIVQLASKFAQ 962


>gi|89890332|ref|ZP_01201842.1| alanyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
 gi|89517247|gb|EAS19904.1| alanyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
          Length = 873

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/906 (35%), Positives = 475/906 (52%), Gaps = 72/906 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR TFL+F++   HE++ S+ ++  NDPTLMF N+GM PFK  F G     Y  +
Sbjct: 1   MKSQQIRQTFLDFYKSKQHEVVASAPMVIKNDPTLMFVNAGMNPFKEYFLGINDSKYSRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTEVYKID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+T+++         D EA+  WK++  ++ D+I+     DNFW M + GPCGPCS
Sbjct: 121 KDCLYVTIFEGDTSENLERDTEAYDYWKEL--IAEDRILNGNKKDNFWEMGDQGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + +EIWNLVFMQ+++        LP   +DTGMG
Sbjct: 179 EIHVDIRTAEEKAAVDGASLVNADHPQVVEIWNLVFMQYKRMADGSLKNLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+A V+Q   +NYD D+F  LI+  E +TG  Y       +  RVI DH+R+ SF IA
Sbjct: 239 FERLAMVMQGVQSNYDTDVFTPLIREIETITGHAYGKTEQEDIAIRVIADHVRAVSFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K L
Sbjct: 299 DGQLPSNNGAGYVIRRILRRAIRYGFTYLNKKEPFIYMLVNTLSKQMGDAFPELKSQKNL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I   ++ E++ F + LD+GLVLLD ++  +      I++G+ AF+LYDT+G P+D+   I
Sbjct: 359 ILNVIKEEEQSFLRALDQGLVLLDSMITAAKSNSQNIIDGNKAFELYDTYGFPIDLTALI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  +G+  +D   F +A+  Q+ R+RA      S TT   W  L+      +FIGYD L 
Sbjct: 419 LREKGME-LDEAGFEKAMAAQKQRSRAA-----SETTTSDWTELRSD-DTQEFIGYDKLE 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RK                           V     G   ++VF+ TPFY E+
Sbjct: 472 ADVRISRYRK---------------------------VTTKKDGDLYQLVFNMTPFYGES 504

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ GD G               KK  G  VH    +      E S    +D   R + S
Sbjct: 505 GGQTGDKGYLESPSGDTIYIIDTKKENGQTVHL--TKNLPKDLEGSHKAVVDANQRHRTS 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS +    LRFD +H   +T  +L+ +E+ VN  I 
Sbjct: 563 SNHTATHLLHQALRKVLGDHVEQKGSMVRSASLRFDFSHFAKVTPEQLQEVENFVNARIR 622

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           + LP+   R    + A+  GA AL G KY D VR +          S  LCGGTHV++T 
Sbjct: 623 EQLPLEENRTNTYDAAVEDGAMALFGEKYGDVVRTIKFG------KSYELCGGTHVANTA 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++    I+SE ++ AGIRRIEAI+    +     Q      + + LK +  N    + ++
Sbjct: 677 DVWHFKIMSEGAVAAGIRRIEAISSDAVKDFFAEQSRHFDEIKTILKSNTKNPADAIAQL 736

Query: 764 WEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E   L+    +               S   I  VNF++   +++D+K +K +   +++
Sbjct: 737 QDENAALKKEIEQLLKAKAGNLKGDLIASAQDINGVNFIATQ-TDLDAKSVKELAFEIER 795

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++ + + +++G S   KA++ ++++++L+     NA  + R   K + GGG GG+ H A 
Sbjct: 796 EMDN-LFLIIGASNGDKATLTVMISKNLVEEKDLNAGSIVRELGKHIQGGG-GGQAHFAT 853

Query: 877 SGGPNG 882
           +GG N 
Sbjct: 854 AGGKNP 859


>gi|146421805|ref|XP_001486846.1| hypothetical protein PGUG_00223 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146387967|gb|EDK36125.1| hypothetical protein PGUG_00223 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 964

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/965 (32%), Positives = 485/965 (50%), Gaps = 94/965 (9%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
            S +R+TFL++F +K+GH+ +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 22  ASKVRSTFLDYFKEKHGHQFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASEMST 81

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI+ AW+LLT  
Sbjct: 82  WKRAVNSQKCIRAGGKHNDLEDVGQDSYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTDV 141

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY+T ++ DE        EA + W    G++ D I+     DNFW M + GPC
Sbjct: 142 YKLDPDRLYVTYFEGDEKLGLGPDLEAKQFWLD-RGVAEDHILTGDAKDNFWEMGDQGPC 200

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVFMQ+ ++       LP   IDTG+G
Sbjct: 201 GPCSEIHYDRIGN-RNAAHLVNMDDPNVLEIWNLVFMQYNREPDSSLRPLPAKHIDTGLG 259

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ+K++NYD D+F+ +     +++G++                 +RVI DH+R
Sbjct: 260 FERLVSILQQKSSNYDTDVFQPIFDKIREISGVRPYTGKFGSEDKDGIDTAYRVIADHVR 319

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F I DG +P NEGRGYVLRRI+RR   Y R             L+P +  +    +P
Sbjct: 320 TLTFAITDGGVPNNEGRGYVLRRILRRGARYVRKYLNCPIGSFFQQLVPVVIEQNSEIFP 379

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+++    ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G 
Sbjct: 380 EILRNMQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 439

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F +A  E    ++A S                   G++Q
Sbjct: 440 PVDLTRLMAAEAGLK-IDEEGFEKARLESWEASKASSNK-----------------GSSQ 481

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
            +  D+   S+                  + V + V  I      V+     GQ+V ++ 
Sbjct: 482 LVKLDVHALSELDSNANIPKTNDSYKYGLDDVKAEVVGIYDGSSFVDSVSEVGQQVGILL 541

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  D G  + DG      D  +   G  +H   +  G L+ +  ++   
Sbjct: 542 DKTSFYAEQGGQEYDKGKIVIDGSAEFEVDNVQVYGGYVLHTGSIVYGTLKVKDEVLACY 601

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H + +T AEL  +
Sbjct: 602 DELRRWPIRNNHTGTHVLNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQGLTPAELTKV 661

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSVEY 683
           E   N  I+ N  V  + +   DA   +G  A+ G  Y D VR           +   + 
Sbjct: 662 EAISNKYISDNKEVFAKDVPLADAQQINGLRAVFGETYPDPVRVVSVGVPVEDLLKDPKR 721

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS---------- 733
           ++    S   CGGTHV+ TGEI  L I+ ES I  GIRRI A+TG  A            
Sbjct: 722 DEWHQVSVEFCGGTHVAKTGEIKDLVIIEESGIAKGIRRIVAVTGTEAHRVQKLAKDYDS 781

Query: 734 ---------HLMGQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIH 774
                        +++K K L   +K    +V+ +           + I ++ +  Q   
Sbjct: 782 QLSEAEAMPFGSSKEQKTKELGVAIKKLSISVLDKQMLNTKFTKLDKSIKDQLKAKQKEE 841

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +K+ L+     L+    +D  F+SHI    ++K +   ++ ++K+  S  I L   S   
Sbjct: 842 SKKVLEAVNNWLTSEDSSDY-FVSHIDISANAKAITDAINLIKKEHNSKTIYLFAGS--D 898

Query: 835 KASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +    V++D +    N+ DLA L++  + GG  GG+ ++ Q  G   +  ++A+  + 
Sbjct: 899 KVAHGCYVSDDAISKGVNSNDLAALASTSI-GGKAGGKGNVVQGMGDKPSGIEKAVEDIT 957

Query: 894 SFLKK 898
           + L K
Sbjct: 958 AALSK 962


>gi|328462753|gb|EGF34642.1| alanyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
          Length = 879

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/920 (34%), Positives = 490/920 (53%), Gaps = 64/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +D ++ ++W+K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLPKEKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E++T   KY     +    ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA  + + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRSFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF   LD GL LLD ++       D+ ++G  AFK++DT+G P ++  +   
Sbjct: 353 NVIQNEEERFQAALDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S   + +  +L      + F         
Sbjct: 413 DAGLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           D      + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 461 --------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL ID + R  L  
Sbjct: 506 QVADHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDLILPMEKGKEYVLKIDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTH S+T +I
Sbjct: 626 AIDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQI-----GDFSSEFCGGTHCSNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SES++ AG+RRIEA+T ++A  +L  +   L  + + +K     N++ +++ + 
Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYQYLANRSSLLDDIQADVKATKPDNIIDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +    Q        Q+N            +  D+  ++ +       +L+ + D  +  
Sbjct: 741 SDLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMNDLRELADNWKSG 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L     + KA+++I +  + L     A DL + +A + GGGG GGRP+MAQ+G
Sbjct: 801 NKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKAAPIFGGGG-GGRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G      + AI  V   + K
Sbjct: 859 GKRPEGLNDAIKAVIEEISK 878


>gi|260102891|ref|ZP_05753128.1| alanine-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260083304|gb|EEW67424.1| alanine-tRNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 879

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/920 (34%), Positives = 490/920 (53%), Gaps = 64/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K
Sbjct: 61  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +D ++ ++W+K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLPKEKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E++T   KY     +    ++I DH+R+ SF IAD
Sbjct: 233 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA  + + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRSFIE 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF   LD GL LLD ++       D+ ++G  AFK++DT+G P ++  +   
Sbjct: 353 NVIQNEEERFQAALDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S   + +  +L      + F         
Sbjct: 413 DAGLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           D      + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 461 --------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL ID + R  L  
Sbjct: 506 QVADHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDLILPMEKGKEYVLKIDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTH S+T +I
Sbjct: 626 AIDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHCSNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SES++ AG+RRIEA+T ++A  +L  +   L  + + +K     N++ +++ + 
Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYQYLANRSSLLDDIQADVKATKPDNIIDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +    Q        Q+N            +  D+  ++ +       +L+ + D  +  
Sbjct: 741 SDLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMNDLRELADNWKSG 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L     + KA+++I +  + L     A DL + +A + GGGG GGRP+MAQ+G
Sbjct: 801 NKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKAAPIFGGGG-GGRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G      + AI  V   + K
Sbjct: 859 GKRPEGLNDAIKAVIEEISK 878


>gi|15834749|ref|NP_296508.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270284916|ref|ZP_06194310.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270288943|ref|ZP_06195245.1| alanyl-tRNA synthetase [Chlamydia muridarum Weiss]
 gi|13878778|sp|Q9PLH5|SYA_CHLMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|7190160|gb|AAF39003.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg]
          Length = 875

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/906 (35%), Positives = 494/906 (54%), Gaps = 47/906 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   
Sbjct: 1   MLSNTLRSNFLKFYTNRNHTPVASSPVFPYNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D
Sbjct: 61  TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              +Y TV+++D+EAF LW+K   L  ++I R+T  DNFWSMA+TGPCG CSE+ FD+GE
Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTNRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E 
Sbjct: 179 KFGKATSPLEDADGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLSET 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ +HLI   E ++ + Y          RVI DH+RS SF I DG+LP N  RG
Sbjct: 239 DTVFEADVLRHLIAKVENLSEITYSPTESKGSAFRVIADHVRSLSFAITDGLLPGNTERG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  A+  I+E L +E+E F
Sbjct: 299 YVLRKILRRAVNYGKRLGFHRPFLAEIVPSLIETMGEAYPELQAAETQIQEVLTTEEEHF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +        +D+ +F
Sbjct: 359 FKTLQRGGNLLHQVLKSSASLSKISGEDAFKLKDTYGLPIDEIALLAKDHNYT-VDMDTF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +   E + R+R +++           F   +    ++F+GYD+L    F          
Sbjct: 418 RKLEMEAKERSRKNTVKN--KNDSDSIFQDVDPTNTSEFVGYDMLSCDTF---------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++ IV+  EI      G++  ++   TPFYAE GGQ+GD+G    + 
Sbjct: 466 -------------IEGIVKYNEIASTLEEGEEGAIILRTTPFYAEKGGQVGDSGEIFCES 512

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       G+  HH  + +G L+T M++   ++   R++++ NH+  HLLH AL 
Sbjct: 513 GTFLVSHTTTPKAGLIAHHGKLSQGSLQTTMAVTAQVNQNLRKKIANNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D +H+K ++  EL +IE  VN+ I +N+PV  R     D
Sbjct: 573 VSLGEHIRQAGSYVDSQKIRLDFSHNKALSPEELLTIETLVNEKIRENVPVTIREALYSD 632

Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            + S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++ 
Sbjct: 633 VMNSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHARATGDIGYFRITKEHAVS 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEA TG+ A +   GQD  L  +A+ ++  +  ++ ++  + EE + L    A  
Sbjct: 687 TGIRRIEATTGEDAENIARGQDTDLNEIATIIQSPKDQLLVKLRNVMEEKKDLAKQLANL 746

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + QL  + +        K+ + +++ + ++E + + ++   + L K++ +  I L    K
Sbjct: 747 ENQLVQQQVKSLLTSCDKVNETSYLVYHLTEEEGQRIQHYANTLHKEVPAKFISLWVTEK 806

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             +  VL+ V++DL+    +A  L         GG  GG+   AQ       +  + +  
Sbjct: 807 NDRYIVLVRVSDDLVKQGIDAQALLEELLAP-YGGRCGGKAVSAQGSSKELPQI-EVLNT 864

Query: 892 V-ASFL 896
           +   ++
Sbjct: 865 ILRQWI 870


>gi|325694024|gb|EGD35942.1| alanine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 872

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/915 (35%), Positives = 491/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F           
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESVF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELTAELLAIVADDASVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      +KA      H +     L    S  L IDY  R ++  NH
Sbjct: 508 ADHGQIFDGAGNLVAQVKDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDYSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPDLLAAVAEKL 872


>gi|195438477|ref|XP_002067163.1| GK24844 [Drosophila willistoni]
 gi|194163248|gb|EDW78149.1| GK24844 [Drosophila willistoni]
          Length = 967

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/977 (30%), Positives = 451/977 (46%), Gaps = 98/977 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
                +R  +L FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P     
Sbjct: 4   MTAKMVRDAYLGFFKEKKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGIADPNSEMS 63

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT 
Sbjct: 64  KWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTD 123

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +  DE        E  +LW  + G+  + ++  +  DNFW M ETGP
Sbjct: 124 RLKLPKDRLYVTYFGGDEASGLEPDLECKQLWLDL-GIKPEHVLPGSMKDNFWEMGETGP 182

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ FD+           +++    +EIWNLVF+Q+ +++      LPK  ID GM
Sbjct: 183 CGPCSELHFDRI-GGRSVPELVNQDDPDVLEIWNLVFIQYNRESDGSLKPLPKKHIDCGM 241

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279
           G ER+ +V+Q K +NYD DLF+ L +  +            G        + +RV+ DH 
Sbjct: 242 GFERLVSVIQNKRSNYDTDLFQPLFEHIQSSTGAPAYQGRVGADDSDGIDMAYRVLADHA 301

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L     +   L+  +   +G A+P
Sbjct: 302 RTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLKAKPGMFASLVNTVVELLGDAFP 361

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLP 397
           E+ +    I + +  E+++F KTL RG  LL+  +  L    +I+ GDVA++LYDT+G P
Sbjct: 362 EVKKDPQHIIDIINEEEQQFLKTLTRGRNLLNRTIEKLGADQKIIPGDVAWRLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS------LKEK 451
           +D+ Q +   +      +       E  +  +   S G GS   E+I         L+++
Sbjct: 422 VDLTQLMAEEKS-----LEIDMAGYEAAKQNSYILSQGKGSSKIEEINLDVHAISQLQDQ 476

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
              T            F  +      ++         SS + AI  + + V+   +GQK 
Sbjct: 477 GVPT--------TNDSFKYKYEAESEERDSPYNYETCSSKILAIRFENQFVQSISNGQKA 528

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMS 570
            +V D T FYAE+GGQ+ D G  +            +    G ++ H  V  G L     
Sbjct: 529 GIVLDNTNFYAESGGQIYDQGALVKANDEANEFLVDRVYNRGGYILHIGVVEGTLAVGDD 588

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           L L ID   R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  
Sbjct: 589 LQLHIDVTRRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKGAMTIE 648

Query: 631 ELKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE------- 682
           ++   E+    ++ +N+P+  +           G  ++    Y D VRV+S         
Sbjct: 649 QVAKTEELTRQMVYKNVPIYAKESKLAVAKSIRGLRSVFDEVYPDPVRVISFGVPVEQLE 708

Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   +   
Sbjct: 709 EQPNGEAGDNTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEAIKAIKKS 768

Query: 739 DEKLKSLASFLKVSQG---------NVVGRVEEIWEE-----------------YRKLQL 772
           ++  + +   LK +             V ++ E+ E+                  + L+ 
Sbjct: 769 EQFEQEI-VTLKATIEADTTGKDSKQHVKQIVELTEQISHATIPYVKKDEMRNLLKSLKK 827

Query: 773 IHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQS 822
               ++  L               C +      +   +   ++ K L + +  ++ ++  
Sbjct: 828 TLDDKERALRAAVSVTVVERAKALCEENPTATVLVQQLEAYNNTKALDAALKQVRSQLPD 887

Query: 823 GIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              M   +  + KK   L  V +  +++   A +  +  ++ L GG GGG+P  AQ+ G 
Sbjct: 888 TAAMFFSVDVDSKKIFCLSSVPKSAVEKGLKANEWVQHLSQSL-GGKGGGKPESAQASGT 946

Query: 881 NGNKADQAIAGVASFLK 897
           N    D+ +     F +
Sbjct: 947 NYESVDEILQLATKFAQ 963


>gi|301604154|ref|XP_002931707.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
          Length = 968

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/974 (33%), Positives = 485/974 (49%), Gaps = 96/974 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
              S IR  F++FF++N H  + SS+ +P +DPTL+F N+GM  FK IF     P +   
Sbjct: 5   MTASEIRQKFIDFFKENAHTYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMA 64

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
                   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA DLLTK
Sbjct: 65  KLNRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTK 124

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           EF +D  RLY+T +        + D E  ++W  + GL   +I+  +  DNFW M +TGP
Sbjct: 125 EFGIDIERLYVTYFGGNEAAGLEPDLECKQIWLNL-GLPESRILPGSMKDNFWEMGDTGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI FD+           + +    +EIWNLVF+QF ++       LPK SIDTGM
Sbjct: 184 CGPCSEIHFDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRETDGTLKPLPKKSIDTGM 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +VLQ K +NYD DLF    +A E+ TG +               + +RV+ DH 
Sbjct: 243 GLERLVSVLQNKMSNYDTDLFVPYFEAIEKGTGARPYTGKVGAEDVDGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L  ++     L+  +   +G+A+P
Sbjct: 303 RTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASKGFFATLVDVVVQSLGNAFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL +   ++++ +  E+ +F KTL+RG  +LD  ++ LG+ +++ GD A+ LYDT+G P+
Sbjct: 363 ELKKDPDMVKDIINEEETQFLKTLNRGRRILDRKINSLGEHKVIPGDTAWLLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   I   RGL  +D+ SF +    +R  A+  S G G+G  + +   +          
Sbjct: 423 DLTSLIAEERGLT-LDLESFEE----ERKAAQLKSQGKGTGDEDLLMLDIYAI------- 470

Query: 459 GYDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
             + LR       D     K       +     + + VKAI +    VEEA +GQ+  +V
Sbjct: 471 --EELRSQGLEPTDDLPKYKYTSNADGVYEFESLIATVKAIRRDKMFVEEASTGQECGLV 528

Query: 515 FDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            D+T FYAE GGQ  D G  +        + + T    +  G +V H     G L+    
Sbjct: 529 LDKTCFYAEQGGQTYDEGYMVKEEESSEDKTEFTVRNTQVRGGYVLHMGTLYGHLKVGDQ 588

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L +D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ 
Sbjct: 589 VCLYVDEPKRRPIMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQ 647

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVE------- 682
           E++  E+  NDII +N  V     +  +A    G  A+    Y D VRVVS+        
Sbjct: 648 EIRKTEEIANDIIKENKVVYALDCSLAEAKAIQGLRAVFDETYPDPVRVVSIGIPVEDLL 707

Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                  G + S   CGGTH+ ++G      IV+E +I  GIRRI A+TG  A+  L  Q
Sbjct: 708 ADPSSPAGSITSVEFCGGTHLQNSGHAGPFIIVTEEAIAKGIRRIVAVTGAEAQKALRRQ 767

Query: 739 DEKLKSLASFLK------VSQGNVVGRVEEI-----------------WEEYRKLQL--- 772
           D    +L+   K          +V   + ++                  E+ + L+    
Sbjct: 768 DALKVNLSDLEKKVKKQNSPNKDVQKEIADLSENLATASIAQWQKDVLREQLKTLKKTMD 827

Query: 773 ---IHAKRKLQLNVEDLSCHKIADVN----FMSHIISEVDSKELKSVMDALQKKIQSGII 825
                +K  +Q  V +++   I +       +  + +   +K L   +  L+ +      
Sbjct: 828 DLDRASKADVQKRVLEITKQLIEEHPNQPLLVLEMENGASAKALNESLKLLKSQSPHTAA 887

Query: 826 MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           M+  +  +  K + L  V +D  D+   A +  +  +  L  G GGG+   AQ+ G N  
Sbjct: 888 MIFSVDNDAGKITCLCQVPQDTADKGLKANEWVQQVSD-LMDGRGGGKDTSAQATGKNVG 946

Query: 884 KADQAIAGVASFLK 897
              Q +     F K
Sbjct: 947 CLSQVLKLAEDFAK 960


>gi|109946744|ref|YP_663972.1| alanyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba]
 gi|122973456|sp|Q17ZF3|SYA_HELAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|109713965|emb|CAJ98973.1| alaS [Helicobacter acinonychis str. Sheeba]
          Length = 847

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/891 (36%), Positives = 481/891 (53%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL+FF+  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG    P     T+ 
Sbjct: 2   DIRNEFLQFFKNKGHEIYPSMPLVP-NDSTLLFTNAGMVQFKDIFTGMVPHPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EAFKLW+K   +  DKI ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAFKLWEKF--VPTDKIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGILSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFVPLMKEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RR++ +  L+G  E  +  ++  +C +    +  L ++K ++ +    E++RF +TL+
Sbjct: 299 ILRRSLRHGYLMGLKEAFLYRVVGVVCEQFADTHAYLKESKEMVMKECFEEEKRFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL  ++I +G +AFKLYDT G PLD+  D+L   G   +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDMLRNHGAC-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKRNNA---DFSTILNAYAPNVFVGYETTECFSQALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + E    Q+V V+ ++TPFYAE GG +GD G  + D     +
Sbjct: 467 --------------DFKEMTETNPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEAAL 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    +   R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLKIKKALKKGDQVIAQVSNE--RLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +HSK +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLSSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +++  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNARILLKNN--DLIAGINKLKESVKNSQK-------ASVP 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL    I   + +  ++ + D   +K ++D L+ K +  + M+    + ++ S+   V 
Sbjct: 737 MDLPIETINGTSVVVGVVEQGD---IKEMIDRLKNKHEKLLAMVF-KQENERISLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L GG GGGR   A +GG +  K   A+    +
Sbjct: 793 NAP---IKAHVWANEVAQIL-GGKGGGRDDFASAGGKDIEKLQAALNAAKN 839


>gi|269795075|ref|YP_003314530.1| alanyl-tRNA synthetase [Sanguibacter keddieii DSM 10542]
 gi|269097260|gb|ACZ21696.1| alanyl-tRNA synthetase [Sanguibacter keddieii DSM 10542]
          Length = 895

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/923 (34%), Positives = 494/923 (53%), Gaps = 65/923 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L +F+  GH ++PS+SL+   DP+ +FT +GMVPF    TGQ+   ++  
Sbjct: 1   MRTAEIRQRWLTYFEDRGHTVVPSASLVSP-DPSTLFTIAGMVPFIPYMTGQQTAPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AWD +T      
Sbjct: 60  TSVQKCVRTL----DIEEVGKTTRHGTFFQMNGNFSFGDYFKEEAIAYAWDFITGSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   +++TV+ ED+EA ++WK+++GL+ ++I      DNFWS    GP GPCSEI+
Sbjct: 116 KLGFDPELVWVTVFHEDDEAREIWKRVAGLTDERIQSRGMRDNFWSTGARGPAGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
            D+G    G   G   + +RYIEIWNLVFMQFE+ +   +   P        +IDTGMGL
Sbjct: 176 IDRGPEY-GAEGGPVVDEDRYIEIWNLVFMQFERADGGTKDDFPILGPLASRNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I+ +++++G  Y     + V  RV+ DH+RS+  LI D
Sbjct: 235 ERVAFLLQGVDNMYEIDEVFPVIEVAQRLSGKTYGAVEADDVRMRVVADHIRSAVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           GI P+NEGRGYVLRR++RR++   RLLG  EP +  L+PA    M ++YPEL +    I 
Sbjct: 295 GIRPSNEGRGYVLRRLIRRSVRAMRLLGVEEPALPALVPASIEVMKASYPELGEGSDRIL 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDVAFKLYDTHGLPLDIMQD 403
               +E+E F +TL  G  +L+  +            +L G  AF+L+DT+G P+D+  +
Sbjct: 355 SIALAEEEAFRRTLTAGTTILETAVGSALSTSGPGKAVLGGAEAFQLHDTYGFPIDLTLE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--YGATQFIGYD 461
           +    G+  +D  +F   ++EQR+RARA +L   SG  +K  +   +       +F+GY 
Sbjct: 415 MASEHGVT-VDETAFRTLMQEQRTRARADALAKRSGGADKAAYEALQTGLGAPVEFLGYT 473

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                       S +  ++  G     A +   VEV+ D+TPFY
Sbjct: 474 DT-----------------------TARSTIVGLIVDGVPGPVATAPATVEVILDRTPFY 510

Query: 522 AEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AEAGGQL D G  +   G  +++ DVQ   +G+ VH   V  G++    S   TID   R
Sbjct: 511 AEAGGQLADQGTIVLDGGGTIEVDDVQAPIKGLSVHRGRVVDGVVTMGESGTATIDTARR 570

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + +S  HSATH++H AL   LG   +Q GS   P  +RFD   S+ + +  L  IE+ VN
Sbjct: 571 KAISRAHSATHMIHKALQESLGKDATQAGSENAPSRIRFDFRSSQAVPTGALAEIEERVN 630

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             +A++L V  ++MN ++A A GA AL G KY DRVRVVS+    GG  S  LC GTHV 
Sbjct: 631 TQLAEDLEVTEQVMNIDEARALGAMALFGEKYGDRVRVVSI----GGDWSRELCAGTHVK 686

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            +G++ L+ ++ E+SI +G+RR++A+ G  A      +   +  L   L V    +  R+
Sbjct: 687 RSGQLGLVTLLGEASIGSGVRRVDALVGDGAYGFQAKEHALVGQLTGMLNVRTEELPDRI 746

Query: 761 EEIWEEYRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMD 814
             +    ++ +   A  +             S   + D   ++H   EV  + +L+++  
Sbjct: 747 GGLITRLKEAEKELAAVRQGQLLAAAGQLAASAEMVGDARVVTHDAGEVASADDLRALAL 806

Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            ++ ++      ++ + G+SK++   V++           A    + ++ VLGGGG GG+
Sbjct: 807 DVRGRLGESAPTVVAVAGVSKDRPLVVVVTNATARERGLKAGAFVKAASGVLGGGG-GGK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVAS 894
             MAQ GG +      A+AG+  
Sbjct: 866 DDMAQGGGQDVTAVPAALAGLRD 888


>gi|195473021|ref|XP_002088795.1| GE11031 [Drosophila yakuba]
 gi|194174896|gb|EDW88507.1| GE11031 [Drosophila yakuba]
          Length = 966

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/973 (31%), Positives = 456/973 (46%), Gaps = 87/973 (8%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           M       +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P  
Sbjct: 1   MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 61  EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M E
Sbjct: 121 LTQRLSLPKDRLYVTYFGGDEASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID
Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276
            GMG ER+ +V+Q K +NYD DLF  L  A +            G        + +RV+ 
Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDVDGIDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G
Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ Q +   + L  ID+  +       +  +   S G G+   E+I   +       
Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +  G        F  +   V  ++         +S + A+  + + V E  SGQK  +V 
Sbjct: 474 E-QG-VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVL 531

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE+GGQ+ D G  +            +    G ++ H  V  G L+    L L 
Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKGAMTIEQVSK 651

Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682
            E    +++ +N+P+  +           G  ++    Y D VRV+S             
Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771

Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAK---- 776
           + +   LK +                +V   E+I          +E R L     K    
Sbjct: 772 QEIIR-LKATIDTDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830

Query: 777 --RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826
             R L+  V      +         +   +   +   ++ K L + +  ++ ++     M
Sbjct: 831 KERALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K
Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNFEK 949

Query: 885 ADQAIAGVASFLK 897
            D+ +   + F +
Sbjct: 950 VDEIVQLASKFAQ 962


>gi|6176442|gb|AAF05593.1|AF188718_1 alanyl-tRNA synthetase [Drosophila melanogaster]
          Length = 966

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/973 (30%), Positives = 454/973 (46%), Gaps = 87/973 (8%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           M       +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P  
Sbjct: 1   MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 61  EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M E
Sbjct: 121 LTQRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID
Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIV 276
            GMG ER+ +V+Q K +NYD DLF  L   S++                    + +RV+ 
Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLSMPSKRALVPQPYQGRVGADDVDGIDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G
Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ Q +   + L  ID+  +       +  +   S G G+   E+I   +       
Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +  G        F  +   V  ++         +S + A+  + + V E  SGQK  +V 
Sbjct: 474 E-QG-VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVL 531

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE+GGQ+ D G  +            +    G ++ H  V  G L+    L L 
Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      + S+    
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMPSSRCPR 651

Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682
                 +++ +N+P+  +           G  ++    Y D VRV+S             
Sbjct: 652 RSSLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771

Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAK---- 776
           + +   LK +                +V   E+I          +E R L     K    
Sbjct: 772 QEI-VRLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830

Query: 777 --RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826
             R L+  V      +         +   +   +   ++ K L + +  ++ ++     M
Sbjct: 831 KERALRAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K
Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949

Query: 885 ADQAIAGVASFLK 897
            D+ +   + F +
Sbjct: 950 VDEIVQLASKFAQ 962


>gi|325690091|gb|EGD32095.1| alanine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 872

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 489/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + F 
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F           
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELTAELLAIVADDASVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      +KA      H +     L    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDVAGNLVAQVTDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKDVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPDLLAAVAEKL 872


>gi|322372372|ref|ZP_08046908.1| alanine--tRNA ligase [Streptococcus sp. C150]
 gi|321277414|gb|EFX54483.1| alanine--tRNA ligase [Streptococcus sp. C150]
          Length = 872

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/918 (35%), Positives = 493/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F++  GH + PS++LIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQIRQMWLDFWKSKGHAVEPSANLIPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  +
Sbjct: 61  PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS +F I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDNMSFKVIADHIRSLAFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGKIMESYYPEVLEKKDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L++L K   + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+ Y+    
Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL-YED--- 465

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  IV      +   SGQ   +VF+QTPFYAE G
Sbjct: 466 --------------------EAAESRLSVIVADDARHDTVNSGQ-ALLVFEQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G        +    V  ++A      H +   G L    +  L ID+  R ++ 
Sbjct: 505 GQVADHGTISDAAGTVVARVVDVQRAPNGQPLHTVEVEGELVVGANYKLEIDHTRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G+H  Q GS    + LRFD TH + +TS EL++IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIIGNHAVQAGSLNEQEFLRFDFTHFEAVTSEELRAIEEQVNEEIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +  PV T   + + A + GA AL G KY   VRVVS+     G +S  LCGGTHV++T E
Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+T + A      +++ LK++A+ LK  Q   V  +V  +
Sbjct: 680 IGMFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+   LQ  +A  K +              +   V +++  +   D+  L++  D  ++
Sbjct: 740 QEQLHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
              S +++L     EK   ++   ++D     +A ++ ++ A ++  G GGG+P MA +G
Sbjct: 800 ADYSDVLVLAAHIGEKVNVLVASKSKD----VHAGNVIKVLAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + N     ++ VA  L
Sbjct: 855 GSDANGIQDLLSAVAEQL 872


>gi|238855615|ref|ZP_04645916.1| alanine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260665325|ref|ZP_05866173.1| alanyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|282933011|ref|ZP_06338405.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|313473100|ref|ZP_07813584.1| alanine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|238831759|gb|EEQ24095.1| alanine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|239528663|gb|EEQ67664.1| alanine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|260560829|gb|EEX26805.1| alanyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|281302865|gb|EFA95073.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 878

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/920 (34%), Positives = 501/920 (54%), Gaps = 64/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S  R  +L+FF+++GH +LPS SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K
Sbjct: 61  RRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD+ +LY TVY +D ++ ++W+K +G+  D II++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLDKDKLYCTVYPKDVDSQRVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      E    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I  +E+++   KY     + V  ++I DH+R+ SF I D
Sbjct: 233 RVLSILQDAPTNFETDLFMPMIHETEKMSAGKKYATNKEDDVAFKIIADHVRAVSFAIGD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE+++    I+
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKVMESHYPEVLKQAPFIQ 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RFG TL+ GL LLD ++       D+ ++G  AFKL+DT+G P ++  +   
Sbjct: 353 KVIKNEEDRFGATLESGLTLLDDLIEKASANDDKTISGKDAFKLFDTYGFPYELTFEAAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +GL  +D   F++ +E Q+ RAR     L S   +    +L      ++F         
Sbjct: 413 DKGLK-VDKAGFDKEMEAQKERARKARGDLQSMGRQD--ETLMNIKDKSEF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                            +     + +  IV   ++V++A  G+   ++FD+TPFYAE GG
Sbjct: 461 --------------EYGVYEEKHAKLIDIVVNDKLVDKA-DGESATLIFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL ID   R  L  
Sbjct: 506 QVADHGDIYDQDGDLVAKVIDVQHAPNDQNLHFVDLVLPMEKGKEYVLKIDAHRREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHL+H AL  +LG H  Q GS + PD LRFD T   P+T  E++++E  VN  I +
Sbjct: 566 SHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V T I + E     GA AL   KY D+VRVV V        S   CGGTH ++T +I
Sbjct: 626 NIEVKTTITDPETGKKMGALALFNGKYGDKVRVVQV-----NDFSIEFCGGTHCANTAQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SE +I AGIRRIEA+T ++A  +L  +D  L+ +   +K     ++  ++  + 
Sbjct: 681 GIFKIISEQAIGAGIRRIEAVTSEKAYEYLANRDALLEEIKKEVKATKAEDIKTKITSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE    Q   ++ + ++N    S       ++  +  ++ I +     +L+ + D  +  
Sbjct: 741 EELHASQKKASELESEINAAKASDIFENVQEVNGLKVIAAIANVNGMNDLRELADNWKSS 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L   + + KA+++I +T+  LD+   A +L +++A + GGGG GGRP+MAQ+G
Sbjct: 801 NKSDVLVLA-CANDGKANMVISLTDAALDKGLKAGNLIKVAAPIFGGGG-GGRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      AIA V + + K
Sbjct: 859 GKNPAGLKDAIAAVINEINK 878


>gi|312864171|ref|ZP_07724405.1| alanine--tRNA ligase [Streptococcus vestibularis F0396]
 gi|311100172|gb|EFQ58381.1| alanine--tRNA ligase [Streptococcus vestibularis F0396]
          Length = 872

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/916 (35%), Positives = 488/916 (53%), Gaps = 68/916 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLTSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS +F I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L++L K     L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSSMLDELLANLKKSGKGTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+ Y+    
Sbjct: 413 EDEGFK-IDHEGFKAAMKEQQERARASVVKGGSMGMQN--ETLANITEPSEFL-YE---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  IV      +   SGQ   +VF+QTPFYAE G
Sbjct: 465 -------------------AETAESHLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G        +    V  ++A      H +   G L    +  L ID+  R ++ 
Sbjct: 505 GQVADHGTISDAAGTVVARVVDVQRAPNGQALHTVEVEGELVVGANYKLEIDHTRRHRVM 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +  PV T   + + A + GA AL G KY   VRVVS+     G +S  LCGGTHV++T E
Sbjct: 625 KATPVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+T + A      +++ LK++A+ LK  Q   V  +V  +
Sbjct: 680 IGMFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+   LQ  +A  K +              +   V +++  +   D+  L++  D  ++
Sbjct: 740 QEQLHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
              S +++L     E K +VL+          +A ++ ++ A ++  G GGG+P MA +G
Sbjct: 800 ADYSDVLVLAAHIGE-KVNVLVASK---SKGVHAGNVIKVLAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVAS 894
           G + N     +  VA 
Sbjct: 855 GSDANGIQDLLLAVAE 870


>gi|17861846|gb|AAL39400.1| GM03058p [Drosophila melanogaster]
          Length = 966

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/973 (30%), Positives = 456/973 (46%), Gaps = 87/973 (8%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           M       +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P  
Sbjct: 1   MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 61  EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M E
Sbjct: 121 LTQRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID
Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276
            GMG ER+ +V+Q K +NYD DLF  L  A +  TG                 + +RV+ 
Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G
Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ Q +   + L  ID+  +       +  +   S G G+   E+I   +       
Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +  G        F  +   V  ++         +S + A+  + + V E  SGQK  +V 
Sbjct: 474 E-QG-VPPTNDTFKYKYDAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVL 531

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE+GGQ+ D G  +            +    G ++ H  V  G L+    L L 
Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSK 651

Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682
            E    +++ +N+P+  +           G  ++    Y D VRV+S             
Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771

Query: 743 KSLASFLKVSQGN---------VVGRVEEIWEE-----------------YRKLQLIHAK 776
           + +   LK +  N          V  + E+ E+                  + L+     
Sbjct: 772 QEI-VRLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830

Query: 777 RKLQLNV---------EDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826
           ++  L               C    +   +   +   ++ K L + +  ++ ++     M
Sbjct: 831 KERALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K
Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949

Query: 885 ADQAIAGVASFLK 897
            D+ +   + F +
Sbjct: 950 VDEIVQLASKFAQ 962


>gi|327458679|gb|EGF05027.1| alanine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 872

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/915 (35%), Positives = 492/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ K  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKKDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G     G+++ L +    +++G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAQGIVADLKEKGQTVISGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F           
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESTF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELTAELLAIVADDASVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      +KA      H +     +    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLAPIALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + ++
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQDQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    + K +VL           +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLVLVAAIGD-KVNVLAASK---TKEVHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPDLLAAVAEKL 872


>gi|170039921|ref|XP_001847766.1| alanyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167863508|gb|EDS26891.1| alanyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 967

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/969 (30%), Positives = 461/969 (47%), Gaps = 89/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
               IR  FL+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      
Sbjct: 6   TAKQIRNIFLDFFKEKEHLYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSK 65

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT  
Sbjct: 66  WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDR 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L   RLY+T +        + D E   +W K+ G+  + I+  +  DNFW M ETGPC
Sbjct: 126 LKLPSDRLYVTYFGGHPESGLEPDLECRDIWLKL-GVKEEHILPGSMKDNFWEMGETGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           + +    +EIWNLVF+QF ++      +LPK  ID GMG
Sbjct: 185 GPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREQDGSLKLLPKKHIDCGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +V+Q+K +NYD D+F  L QA ++ TG                 + +RV+ DH R
Sbjct: 244 YERLVSVIQDKRSNYDTDVFVPLFQAIQKGTGAPDYQGRVGAEDVDGVDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +PE
Sbjct: 304 TITIALADGGFPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFATLVDTVVELLGDTFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I+  +  E+++F KTL RG  LL+  ++ LG  +++ GDVA++LYDT+G P+D
Sbjct: 364 VKKDPQHIKNIINEEEQQFLKTLSRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQF 457
           +   +   + +  ID+  + +A  +    ++       +     +     L+EK   T  
Sbjct: 424 LTGLMAEEKNMT-IDMEGYEKAKHQSYIISQGKEKSKTATVDLDVHAISELQEKKVPT-- 480

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                     F    +          +    +  V A+      V+E  +GQ+  V+ D+
Sbjct: 481 ------TNDTFKYHYKAESTDPLAAYVFEPCTGKVLALRYNNAFVDEVQAGQECAVILDK 534

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE+GGQ+ D G  +         +V      G +V H  V  G+LR    +   +D
Sbjct: 535 TNFYAESGGQIYDQGYLLKVNDESTEFNVNLVYNRGGYVLHIGVVEGVLRVGDEVACHMD 594

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R+    NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +T  ++   E
Sbjct: 595 VVRRQLTMKNHSATHALNHSLLKVLGLDTDQRGSLVVPEKLRFDFTNKAAMTIEQVAEAE 654

Query: 637 DNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684
               +++ +N+ V  +           G  ++    Y D VRV+S               
Sbjct: 655 RLTREVVKKNMQVYAKESKLASAKAIKGLRSVFDEVYPDPVRVISFGVPVEDLEANPEGV 714

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G   S   CGGTH+  +G ++   I +E +I  GIRRI A+TG  A   L   +     
Sbjct: 715 AGTETSVEFCGGTHLHQSGHMVDFVITTEEAIAKGIRRIVALTGPEAIKALKKTELLEGE 774

Query: 745 LASFLKVSQG---------NVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVEDLS 787
           L + LK +             V ++ E+ E+         +K ++ +  + L+  ++D  
Sbjct: 775 L-NALKATIDADKTGADSREHVKKIVELNEDVSQAVIPYVKKDEIRNQLKSLKKTLDDKE 833

Query: 788 --------------CHKI----ADVNFMSHIISEV-DSKELKSVMDALQK-KIQSGIIML 827
                           ++     D  F+ H +    ++K L S +  ++K  ++   + +
Sbjct: 834 RAARAAVATTVVEAAKELCAANKDAPFIVHRLEAFSNTKALDSALKEVRKLNVEQSALFV 893

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                 KK   L  V +  +++   A +     +  + GG GGG+P  AQ+ G   +K +
Sbjct: 894 SSDPDTKKIFCLASVPKSAVEKGLKANEWISHISPSM-GGKGGGKPESAQASGGAFDKVE 952

Query: 887 QAIAGVASF 895
           + +    +F
Sbjct: 953 EILELARAF 961


>gi|295396122|ref|ZP_06806305.1| alanine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971063|gb|EFG46955.1| alanine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 884

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/916 (35%), Positives = 489/916 (53%), Gaps = 56/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  +LEFF+  GH ++PS+S+I  +DP+++F  +GMV F    TG+E   +   
Sbjct: 1   MKTAEIKRRWLEFFESKGHTVVPSASVI-SSDPSILFNIAGMVQFIPYLTGREPAPFPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFK  AI +AW+LLT      
Sbjct: 60  TSVQKCVRTA----DIEEVGQTTRHGTFFQMNGNFSFGDYFKREAISMAWELLTTLEDKG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   L++TV+ +D  +  LW + + +  ++I      DNFW   + GP G CSEI+
Sbjct: 116 GLGFDPNLLWVTVHQDDAASIDLWLEETSMPRERIQMRGNEDNFWHTGQPGPGGYCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           FD+G    G   G   + +RYIEIWNLVFM+FE      + +   +  LP  +IDTGMGL
Sbjct: 176 FDRGPAY-GKEGGPVADEDRYIEIWNLVFMEFELSEVRTKVDFDIKGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A + Q   N Y+ID    +I+ +E+++G  Y    ++ V  RV+ DH+RS+  +I D
Sbjct: 235 ERVAFLKQGVENMYEIDEVYPVIKKAEELSGRAYGTNHDDDVRMRVVADHVRSALVIIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR++   RLLG T+P++ HLLP     M  +YPEL      I 
Sbjct: 295 GVRPGNEGRGYILRRLLRRSIRAMRLLGVTQPVLPHLLPVSKDAMKQSYPELDTDFDRIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +   +E+  F +TL+ G  LL   ++ +GK   ++G VAF L+DTHG P+D+  ++    
Sbjct: 355 KIAYAEETAFLRTLESGTQLLTRTVAEVGKGGTIDGAVAFTLHDTHGFPIDLTVEMAHEA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   +D+  F   +EEQR RA+A +     G      +S   + G ++F+GYD L     
Sbjct: 415 G-VEVDVDGFKAHMEEQRQRAKADAKSKKGGGANLTAYSHLLEAGTSEFVGYDNLNTL-- 471

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + V+ I++ GE V  A +G  V+VV D TPFYAE+GGQ 
Sbjct: 472 ---------------------ATVRGIIKDGEAVPVAHAGDTVDVVLDITPFYAESGGQT 510

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G  ++ ++TDVQ    G+  H   VE G L T   +   +D  +R Q    HS
Sbjct: 511 ADIGHLTGPDLKARVTDVQNILAGLPTHKVTVETGELETGALITAQVDPDHRYQAQQAHS 570

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LGS+ +Q GS   P  LRFD ++ + ++ A  + IE+  N  +  N  
Sbjct: 571 ATHLIHAALREVLGSNATQAGSLNNPGYLRFDYSYPEALSPAARQEIEECANTAVRDNFE 630

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V    +  E+A  SGA AL G +Y + VRVV +     G  S  LCGGTHV+ T EI  +
Sbjct: 631 VGYDFLPFEEAKKSGAMALFGERYPEIVRVVDI----NGTWSRELCGGTHVTRTAEIGPI 686

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            + SE+S+ +G RRIEA  G  A   L  +   +  L+  LKV    V  RV  + +  +
Sbjct: 687 SLTSEASVGSGTRRIEASVGLDAMKQLARERSTVAQLSELLKVPGPEVYERVTGLMDRIK 746

Query: 769 KLQLIHAKRKLQLNV-----EDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQS 822
           + +   A    +  +        S  K+     ++  + +V ++ +++S +  ++ ++  
Sbjct: 747 EAERTIAHLNQEKVLARATDAAASAQKLGPATVVTTELGDVANAADVRSFVLDVRNRLND 806

Query: 823 GIIMLVGIS-KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              ++  +     K +V+I V  +       A  L   + K LGGGG GG+P +AQ GG 
Sbjct: 807 PAHVIAAVGLANGKPAVVIAVGPEAQKAGLKAGALVTSACKTLGGGG-GGKPDLAQGGGQ 865

Query: 881 NGNKADQAIAGVASFL 896
           +  K  QA   V   +
Sbjct: 866 DATKVSQAFQDVRDQV 881


>gi|24582809|ref|NP_523511.2| Alanyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|45552267|ref|NP_995656.1| Alanyl-tRNA synthetase, isoform B [Drosophila melanogaster]
 gi|75027177|sp|Q9VLM8|SYAC_DROME RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|7297398|gb|AAF52657.1| Alanyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|45445248|gb|AAS64737.1| Alanyl-tRNA synthetase, isoform B [Drosophila melanogaster]
          Length = 966

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/973 (31%), Positives = 457/973 (46%), Gaps = 87/973 (8%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           M       +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P  
Sbjct: 1   MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 61  EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M E
Sbjct: 121 LTQRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID
Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276
            GMG ER+ +V+Q K +NYD DLF  L  A +  TG                 + +RV+ 
Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G
Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ Q +   + L  ID+  +       +  +   S G G+   E+I   +       
Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +  G        F  +   V  ++         +S + A+  + + V E  SGQK  +V 
Sbjct: 474 E-QG-VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVL 531

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE+GGQ+ D G  +            +    G ++ H  V  G L+    L L 
Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSK 651

Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682
            E    +++ +N+P+  +           G  ++    Y D VRV+S             
Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771

Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAK---- 776
           + +   LK +                +V   E+I          +E R L     K    
Sbjct: 772 QEI-VRLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830

Query: 777 --RKLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826
             R L+  V      +         +   +   +   ++ K L + +  ++ ++     M
Sbjct: 831 KERALRAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K
Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949

Query: 885 ADQAIAGVASFLK 897
            D+ +   + F +
Sbjct: 950 VDEIVQLASKFAQ 962


>gi|323465940|gb|ADX69627.1| Alanyl-tRNA synthetase [Lactobacillus helveticus H10]
          Length = 894

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/920 (34%), Positives = 489/920 (53%), Gaps = 64/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 16  MKKLTSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 75

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K
Sbjct: 76  HRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 131

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L + +LY TVY +D ++ ++W+K +G+ AD I+++   DNFW + E GPCGP +EIF
Sbjct: 132 WLGLPKEKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIF 187

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      +    P  +IDTGMGLE
Sbjct: 188 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLE 247

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E++T   KY     +    ++I DH+R+ SF IAD
Sbjct: 248 RVLSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIAD 307

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE
Sbjct: 308 GALPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIE 367

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +++E+ERF  TLD GL LLD ++       D+ ++G  AFK++DT+G P ++  +   
Sbjct: 368 NVIQNEEERFQATLDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQ 427

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F+  ++ Q+ RAR     L S   + +  +L      + F         
Sbjct: 428 DAGLK-VDKKGFDAEMQAQKERARKARGALQSMGRQDV--TLMNIKDKSVF--------- 475

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           D      + +  IV   ++V++A  G+   +VFD+TPFYAE GG
Sbjct: 476 --------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGG 520

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL ID + R  L  
Sbjct: 521 QVADHGNIYDQDGELVAKVTDVQHAPNDQNLHFVDLILPMEKGKEYVLKIDKERREGLRH 580

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I +
Sbjct: 581 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 640

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL   KY  +VRVV +     G  SS  CGGTH S+T +I
Sbjct: 641 AIDVKTTITTPEEGEKMGALALFDGKYGHKVRVVQM-----GDFSSEFCGGTHCSNTNQI 695

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SES++ AG+RRIEA+T ++A  +L  +   L  + + +K     N++ +++ + 
Sbjct: 696 GIFKIISESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQADVKATKPNNIIDKIDSLE 755

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +    Q        Q+N            +  D+  ++ +       +L+ + D  +  
Sbjct: 756 SDLHDCQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMNDLRELADNWKSG 815

Query: 820 IQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L     + KA+++I +  + L     A DL + +A + GGGG GGRP+MAQ+G
Sbjct: 816 NKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKAAPIFGGGG-GGRPNMAQAG 873

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G      + AI  V   + K
Sbjct: 874 GKKPEGLNDAIKAVIEEISK 893


>gi|315503215|ref|YP_004082102.1| alanyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315409834|gb|ADU07951.1| alanyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 893

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/911 (36%), Positives = 494/911 (54%), Gaps = 72/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  FL  F+ NGH ++PS+ L   +DP L+F N+GMV F   F GQ+ P Y   
Sbjct: 1   MKTAEIKRRFLAHFEANGHTVVPSAPLPAISDPNLLFINAGMVQFVPYFLGQQTPPYARA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK  AI LAWDL TK     
Sbjct: 61  TSVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKSGAIPLAWDLATKPVEAG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY +D+EA+ +W+  +G+ A++I+R    DNFWSM   GPCGPCSE++
Sbjct: 117 GFGLDPERIWATVYLDDDEAYDIWRA-TGVPAERIVRRGKADNFWSMGIPGPCGPCSELY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
           +D+G    G   G   + +RY+E WNLVFMQFE+     +   P        +IDTGMGL
Sbjct: 176 YDRGPAY-GREGGPEVDEDRYLEFWNLVFMQFERGPGVGKEDFPILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  K ++  + ++TG +Y             + V  RVI DH+R
Sbjct: 235 ERMASLLQGVDNLYEIDEVKPILDRAAELTGKRYGVHSGHAANESHPDDVRLRVIADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           +S  LI DG+ P+NEGRGYVLRRIMRRA+   RLLGY +  +  LLP     M  +YPEL
Sbjct: 295 TSLMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGYQDRALPELLPVARDCMAPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPL 398
            +    I +   +E++ F  TL  G  +LD  ++         L+GD AF+L+DT+G P+
Sbjct: 355 AEDFGRISQYAYAEEDAFLATLRAGTTILDTAIAETKSAGKAALSGDKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +GL  +D   F + + +QRSRA+A +    +G T+   + S+ +  G  +F
Sbjct: 415 DLTLEIAAEQGL-QVDAEGFRRLMADQRSRAKADAQARKTGHTDVSAYRSVLDGGGPVEF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY  L                          S V+A++  G  V  AV G  +E+V D 
Sbjct: 474 TGYTEL-----------------------SRESRVRALLSGGAAVSAAVEGDTIELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R+  +    ID 
Sbjct: 511 TPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRAKVVRGEVRSGETGYAEIDV 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + L  +E 
Sbjct: 571 SRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLHDVEQ 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+++  +L V   + ++E+A   GA AL G KY +RVRVV V     G ++  LCGGT
Sbjct: 631 QVNEVLLADLEVHAFVTSQEEARRIGAMALFGEKYGERVRVVEV-----GDYARELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+ + ++ L+ I+SE+S+ +G+RRIEA+ G  A   L  +   +  LA   +V    V 
Sbjct: 686 HVARSAQLGLVKILSEASVGSGVRRIEALVGMDAFGFLAREHLLVSRLAELFRVPGEQVA 745

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHI----ISEVDSKELKS 811
            RVE+   + R  +    K + Q  L        +  DV  ++++         + ++++
Sbjct: 746 DRVEQTVTQLRDAEKELEKLRAQLVLGGAGALAAQAKDVRGVAYVGTEAPEGAAANDVRT 805

Query: 812 VMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +   ++ +I      ++ V      KAS+++ V +    R  +A DL + +      G G
Sbjct: 806 LAQEIRGRIDAARPAVVAVAARANGKASLVVAVNQAARGRNLSAKDLVKAAFS----GRG 861

Query: 869 GGRPHMAQSGG 879
           GG   +AQ GG
Sbjct: 862 GGSDDLAQGGG 872


>gi|296394106|ref|YP_003658990.1| alanyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181253|gb|ADG98159.1| alanyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 892

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/921 (35%), Positives = 482/921 (52%), Gaps = 62/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL  F KNGHEL PS+SLI  +DP L+F N+GMV F   F GQ  P    +
Sbjct: 1   MRTAEIIERFLGHFIKNGHELTPSASLI-LDDPNLLFVNAGMVQFVPYFLGQRTPPSPRL 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKERAIQLAW LLT      
Sbjct: 60  TSIQKCVRT----QDIEEVGVTTRHNTFFQMAGNFSFGDYFKERAIQLAWTLLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL+ TVY++D+EA  LWKK++GL  +++ R    DN+WSM   GP GPCSEI+
Sbjct: 116 GYGFDPERLWATVYEDDDEAITLWKKVAGLPDERVQRRGPADNYWSMGIPGPSGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFMQ E      + +      LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GADGGPEADEDRYLEIWNLVFMQNELAAIRSKTDFDIAGPLPKRNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ D+ + +I  +EQ+TG +Y      +    RVI DH R++  LIA
Sbjct: 235 ERVAFLLQGVDNVYETDVVRPVISVAEQLTGRRYGAGSHADDTRFRVIADHARTAVMLIA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  ARLLG TE     L+  + + M   YPEL      I
Sbjct: 295 DGVNPGNDGRGYVLRRLLRRIVRAARLLGATELATPALVAQVVSSMSPMYPELSHEAARI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E T   E+  F  T+D G  L + V +       +I+ G  AF L+DT+G PL++  ++ 
Sbjct: 355 ERTAAGEEHAFRNTIDSGSKLFEQVAAGALGSSRKIIPGTEAFALHDTYGFPLELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D   F Q + EQR RA+A +        ++  +        T+F G+D L  
Sbjct: 415 REVGLE-VDQEGFAQLMAEQRRRAKADAKSRKQAHEDQSAYQALLDGPPTEFTGFDELSS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                     +  +V  G++  E  +GQ+ +++ D+TP YAE+G
Sbjct: 474 -----------------------FGTILGVVVDGQLANEVRAGQEAQIILDRTPLYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQL DTG     G   +++DVQK A+ +F H   V  G   T   +   +D + R   + 
Sbjct: 511 GQLADTGSISAPGAFAEVSDVQKIAKRLFAHRVKVVEGAFATGQEVTAQVDSKWRHGANQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS THL+H AL  +LG   +Q GS   P  LRFD      ++    + IE  V + +  
Sbjct: 571 GHSGTHLVHAALRQVLGPEATQAGSLNKPGYLRFDFRWHSALSPQAKQEIESVVGEAVET 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           + PV T + + + A A GA AL G  Y +RVRVV +    GG  S  LCGGTHV S+ ++
Sbjct: 631 DYPVNTFVTDIDRARAMGALALFGENYGERVRVVEI----GGPFSMELCGGTHVPSSAKV 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + ++ ESS  +G RR+EA+ G  AR HL  +   L ++AS +         +V  + E
Sbjct: 687 GPVVLLGESSTGSGTRRVEALVGYDAREHLAKERALLAAVASAVGAPAPEAPDKVRALVE 746

Query: 766 EYRKLQLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             + L+   A++             +  S  ++     +  + +EVDS +L+ +  ++++
Sbjct: 747 RVKTLEREIARQAQAQARAQAGNLAQSASPVRLCSGAVVEFVSAEVDSDDLRGLAASMKE 806

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA 875
              S   +  L   S E K +  ++ T+   +    A +L R  A  +  G GGG+  +A
Sbjct: 807 AFGSRAAVAALFHKSGE-KVAFAVLATKAANELGAKAGELLRAVAPAVN-GRGGGKDDLA 864

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q  G + +    A A +   +
Sbjct: 865 QGSGTDPSAVPAAQAKLREEI 885


>gi|118617374|ref|YP_905706.1| alanyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|205830158|sp|A0PPG6|SYA_MYCUA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118569484|gb|ABL04235.1| alanyl-tRNA synthetase AlaS [Mycobacterium ulcerans Agy99]
          Length = 901

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/921 (33%), Positives = 461/921 (50%), Gaps = 72/921 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYATA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L+ TVY +D+EA  LW++++GL AD+I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPEKLWATVYLDDDEAAGLWREVAGLPADRIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G            E  RY+EIWNLVFMQ E+     +        LP+ +IDTGMG+
Sbjct: 176 YDRGPDYGPEGGPVVNED-RYLEIWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ DL + +I          Y      + V +R+I DH R+++ LIA
Sbjct: 235 ERVALILQGVPNVYETDLLRPIIDLVAARAPRGYDQGNHADDVRYRIIADHSRTAAILIA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  A+LL     ++  L+  +   MG +YPEL      I
Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLNIDTAIVGDLMATVRDAMGPSYPELASDSDRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+  F +TL  G  L D V   +      +++G  AF L+DT+G P+++  ++ 
Sbjct: 355 NRIAVAEETAFNRTLASGSRLFDEVAGATRSSGVSVVSGSDAFTLHDTYGFPIELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D   F + + +QR RA+A +        +   +      G T+F G+D L  
Sbjct: 415 SEAGLT-VDEGGFRELMAQQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELTS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-----QKVEVVFDQTPF 520
                                   + +  I   G+ V     G      +VE+V D+TP 
Sbjct: 474 -----------------------EARILGIFVDGKRVPVVAHGQAVDADRVELVLDRTPL 510

Query: 521 YAEAGGQLGDTGCAIGD----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           YAE+GGQ+ D G   G       R  +TDVQK A+ +++H   VE G       +V   D
Sbjct: 511 YAESGGQIADVGTISGTGSGSSARAAVTDVQKIAKTLWLHRVNVESGEFVEGDGVVAAAD 570

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R+  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   IE
Sbjct: 571 AGWRKGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRGQIE 630

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N  +  +  V T     E A A GA AL G  Y D VRVV +    GG  S  LCGG
Sbjct: 631 EVTNQAVQADFAVHTFTEQLEKAKAMGAMALFGECYPDEVRVVEI----GGPFSIELCGG 686

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV+++ +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V
Sbjct: 687 THVATSAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 746

Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHII-SEVDSKELK 810
             RV  + E  +  +    + +L               +I +V  ++  + SE+   +L+
Sbjct: 747 PARVASLVERLKAAEKELERARLASVRAAAVNAAAGAERIGNVRLVAQRMSSEMTPADLR 806

Query: 811 SVMDALQKKIQS--GIIMLVGISKEKK---ASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864
           +++  ++ K+ S   ++ L+      +      ++   +        A +L +  A  + 
Sbjct: 807 TLVGDIRGKLGSDPAVVALIAAPAGGESSTVPYVVAANQAAQGLGLGANELIKHLAAAV- 865

Query: 865 GGGGGGRPHMAQSGGPNGNKA 885
            G GGG+  +AQ  G      
Sbjct: 866 DGRGGGKADLAQGSGKKPAGI 886


>gi|326927213|ref|XP_003209787.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Meleagris
           gallopavo]
          Length = 968

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/969 (32%), Positives = 478/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SSS IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASQIRQRFIDFFKENRHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA DLLTKE
Sbjct: 66  LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +          D E  ++W  + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLDEGRILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGDRD-ASHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYMGQVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   L   +     L+  +   +G A+PE
Sbjct: 304 TITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+++F KTL RG  +LD  +  +G  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSMGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + +   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMEGFEE----ERKNAQLKSQGKGAGGEDLLMLDI-YAIEELRARG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            ++   S                     + + VKAI ++ + VEE  +GQ+  +V D+T 
Sbjct: 478 LEVTDDSPKYG----YTSDPSGTYDFGSLVATVKAIRREKKFVEEVSTGQECGIVLDRTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L+I
Sbjct: 534 FYAEQGGQIYDQGYMVKDDDSREDKTEFTVKNVQVRGGYVLHIGTLYGSLKVGDQVHLSI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E+K +
Sbjct: 594 DETRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGALSTQEIKKV 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E   N +I +   V  R           G  A+    Y D VRVVS+             
Sbjct: 653 EGIANQMIEEAKTVYARDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVDELLADPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD---E 740
             G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  AR  L   +   +
Sbjct: 713 PAGSITSIEFCGGTHLQNSGHAGPFVIVSEEAIAKGIRRIVAVTGAEARKALRKVESLKK 772

Query: 741 KLKSLASFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
            L +L + +KV      +V   + ++ E        +++K +L  A + L+  ++DL   
Sbjct: 773 LLSALDAKVKVQTAPNKDVQKEITDLSEMLATAVIPQWQKDELREAVKALKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             AD+                     +  + +   +K L   +   +        ML  +
Sbjct: 833 SKADIQKRVLEKTKQVIESHPNQPLVIMEMENGASAKALNESLKLFKTHSPQTATMLFAV 892

Query: 831 SKE-KKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  + + L  V ++       A    +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGRITCLCQVPQETAQKGLKANQWVQEVSA-LMDGKGGGKDISAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +     F +
Sbjct: 952 LRLATDFAR 960


>gi|254366760|ref|ZP_04982803.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|134152271|gb|EBA44316.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis str.
           Haarlem]
          Length = 904

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/932 (34%), Positives = 482/932 (51%), Gaps = 72/932 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFGG F+ R I+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGGLFQTRVIELAWALLTNSLAAG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G            E  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG+
Sbjct: 176 YDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A VLQ+  N Y+ DL + +I    +V    Y      + V +R+I DH R+++ LI 
Sbjct: 235 ERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I
Sbjct: 295 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+  F +TL  G  L + V S        +L+G  AF L+DT+G P+++  ++ 
Sbjct: 355 SRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR 
Sbjct: 415 AETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQ 517
                                   + +  I   G+ V          A  GQ+VE+V D+
Sbjct: 474 -----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDR 510

Query: 518 TPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           TP YAE+GGQ+ D G   G    +  R  +TDVQK A+ ++VH   VE G      +++ 
Sbjct: 511 TPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIA 570

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +  
Sbjct: 571 AVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRT 630

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S  L
Sbjct: 631 QVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLEL 686

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV  
Sbjct: 687 CGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPS 746

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSK 807
             V  RV  + E  R  +    + ++               +I +V  ++  +S  + + 
Sbjct: 747 EEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAA 806

Query: 808 ELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864
           +L+S++  ++ K+ S   ++ L+   + +     +       D    A DL +  A  + 
Sbjct: 807 DLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE 866

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G GGG+  +AQ  G N    D A+  V S +
Sbjct: 867 -GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 897


>gi|324993321|gb|EGC25241.1| alanine--tRNA ligase [Streptococcus sanguinis SK405]
          Length = 872

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/915 (35%), Positives = 491/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + F 
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F           
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESVF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ + AIV     VE   SG    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      +KA      H +     L    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLDPLALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPDLLAAVAEKL 872


>gi|227432461|ref|ZP_03914448.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351782|gb|EEJ42021.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 893

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/928 (34%), Positives = 478/928 (51%), Gaps = 70/928 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  FL+FF   GHE +PS +LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKDLSSAEIRQMFLDFFASKGHEAVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPNN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEM+GNFS G YFKE+AI  AW+LLT  +
Sbjct: 61  PRITNSQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEQAIPWAWELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +LY+TVY +D+EA K+W++ + L    I  +   DNFW + E GP GP SEIF
Sbjct: 117 WYGLDAEKLYVTVYPKDQEARKIWEEKTSLPDGHIYEV--EDNFWDIGE-GPSGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227
           FD+G                 E ERY+EIWNLVF QF       +  +   LP  +IDTG
Sbjct: 174 FDRGSSFQDLPDDDPEMYPGGENERYLEIWNLVFSQFNHLPGLTDNSQYPELPHKNIDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNNI----VNHRVIVDHLRSS 282
           MGLER+ +V Q    N+D DLF  +IQ +E++     Y+ +       + +VI DH+R+ 
Sbjct: 234 MGLERVVSVFQNGRTNFDTDLFLPIIQDTERLSNQFTYDDSQDSEVNTSFKVIADHIRAI 293

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +F I DG LP+NEGRGYV+RR++RRA+ + + LG     + +L+P +   M S YPE+  
Sbjct: 294 TFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGIKGQFLTNLVPIVGDIMESYYPEVKA 353

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDI 400
               I++T+ +E++RF  TL  GL LL+ V+    K     ++G  AFKL DT+G PL++
Sbjct: 354 NTAKIQKTVAAEEKRFNATLTGGLSLLNDVIKEAKKTGQTQISGADAFKLSDTYGFPLEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q+     GL        ++   ++     A S     G    +   L+     ++++G+
Sbjct: 414 TQEQAEDAGLIVDVDGYNDELQAQRVRARAARSNTKSMGVQNAVLTDLRVD---SKYVGW 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-----IVEEAVSGQKVEVVF 515
                +                       + + AI+ + E     +++ A     V+V F
Sbjct: 471 SQTEVNH----------------------AEIVAIIGEDEQGVDALLDNADVDATVQVAF 508

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLT 574
           D TPFY+E GGQ+ D G  +     +       + A      H +           + L 
Sbjct: 509 DVTPFYSEMGGQVPDFGDVLNTNGDVIAHVTDVQTAPNGQHIHTVDVISSFTLGDKVDLK 568

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D      +S NH+ATH+L  +L  +LG  V Q GS + P+ LRFD  +  P++S +L  
Sbjct: 569 VDMVRHIAVSKNHTATHMLDQSLRNVLGGDVHQAGSLVEPEYLRFDFNNEGPVSSEDLDK 628

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  +N  IA+NL V     + E A   GA A+ G KY D+VRVVS+     G  +    
Sbjct: 629 IESMMNQEIAKNLSVTWLETDIESAKKLGAVAVFGEKYGDQVRVVSI-----GDFNKEFD 683

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ- 753
           GGTH +ST E+ L  IVSES I AG+RRIEA+TG +A S    Q++ LK +A+ LK  + 
Sbjct: 684 GGTHANSTAELGLFKIVSESGIGAGVRRIEAVTGLQALSQYKAQEKALKEIATALKAQKL 743

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKE 808
            +   +V ++  + R +Q      + +L              +    +++  +       
Sbjct: 744 TDAPEKVYDLQADLRTVQRHAESLEAKLANATAGEIFNDVKTVNGHTYITAQLQVSGMDG 803

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           L+ V D  ++   S +++L  ++ EK + ++    +       A +L +  A  +GGGG 
Sbjct: 804 LRQVADNWKENYPSDVLVLATVADEKVSLIVAAAPDANQSGIKAGELIKSIAPHIGGGG- 862

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGRP MAQ+GG        A A V++FL
Sbjct: 863 GGRPDMAQAGGKKPAGIPDAFAAVSAFL 890


>gi|325688315|gb|EGD30334.1| alanine--tRNA ligase [Streptococcus sanguinis SK72]
          Length = 872

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 490/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F           
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              + + + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELIAELLAIVADDASVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      +KA      H +     L    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDKAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    ++D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLVLVAAIGDKVNVLAASKSKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPDLLAAVAEKL 872


>gi|327468935|gb|EGF14407.1| alanine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 872

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/915 (35%), Positives = 493/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ++RARA  +  GS   +    +L+     + F           
Sbjct: 416 GMT-VDRSGFEAAMKEQQNRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G       + +      +KA      H +     L    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDGAGKLVAQVTDVQKAPNGQPLHTVEVFAPLALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY  +VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKKVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKDVQETNGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPDLLAAVAEKL 872


>gi|19746355|ref|NP_607491.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|24418690|sp|Q8P0E6|SYA_STRP8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|19748550|gb|AAL97990.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
          Length = 872

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/918 (34%), Positives = 488/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF+  AI   ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIGWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+  F I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALLFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKERGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R  Q  +A+ K +              +   V F++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  +
Sbjct: 855 GSDASKIAELLAAVAETV 872


>gi|125717605|ref|YP_001034738.1| alanyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|205830231|sp|A3CLY3|SYA_STRSV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|125497522|gb|ABN44188.1| Alanyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 872

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 490/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      +++G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVISGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F           
Sbjct: 416 DMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      +KA      H +     L    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKDVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPDLLAAVAEKL 872


>gi|160915324|ref|ZP_02077537.1| hypothetical protein EUBDOL_01333 [Eubacterium dolichum DSM 3991]
 gi|158433123|gb|EDP11412.1| hypothetical protein EUBDOL_01333 [Eubacterium dolichum DSM 3991]
          Length = 874

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 489/915 (53%), Gaps = 61/915 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FL++F   GH + P +SL+P NDPTL++ N+G+   K  F G EKP  
Sbjct: 1   MKELTGNQIRQMFLDYFASKGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  +
Sbjct: 61  NRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSPQ 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                + +LY++VY +D +A+++W ++ G+    I++  T  NFW + E GP GP SEIF
Sbjct: 117 WIGFPKEKLYVSVYTDDHDAYRIWTEVCGVDPSHILK--TEGNFWEIGE-GPGGPDSEIF 173

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           FD+GE                E +RYIE+WN+VF QF+ + +    E   LP+ +IDTGM
Sbjct: 174 FDRGEEYDPEGLEEKLFFEEMENDRYIEVWNVVFSQFDCKPELDRSEYKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIA 287
           GLER+  ++Q    N+D DLF  +I  +E+ T   Y+   N +  RVI DH+R+ +F +A
Sbjct: 234 GLERLVCLVQGGETNFDTDLFLPIIHETEKYTSCSYQVNENKMAFRVIADHIRTVTFALA 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG L +NEGRGYVLRR++RRA+ + + L      M  L+P +   M   YP L +    I
Sbjct: 294 DGALFSNEGRGYVLRRVLRRAVRFGKKLKIEGAFMYKLVPVVYEIMQDFYPYLGEKLDYI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + +++E+ERF  TL  G  L+  V+    + + ++G  AFKLYDT+G P ++  ++   
Sbjct: 354 AKLVKAEEERFQATLSDGEKLMREVMERNKETKTIDGATAFKLYDTYGFPFELTLEMAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G   +D   F   +++Q+ RAR       S +++     L      + F+GYD      
Sbjct: 414 SGYF-VDKDGFQAEMKQQKERARNAREEQESMSSQSA--DLMNCTLESTFVGYD------ 464

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 + V A+ + G  V+E V  +  +V+FDQT FYAE+GGQ
Sbjct: 465 -----------------ACCCDARVIALFKDGVKVDELV--EDGDVMFDQTVFYAESGGQ 505

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG  I   +   + +  K      +H   +  G L     + L +D + R  ++ NH
Sbjct: 506 VGDTGT-ISKAVEAVVENTVKAPHKQHLHRVHINAGALHVGDEVSLKVDEKRRAVITSNH 564

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  AL  ++G H++Q GS ++ + LRFD TH + ++  +L++IE+ VN+ IA + 
Sbjct: 565 SCTHLLQSALKRVVGEHIAQAGSFVSDEYLRFDFTHFEKVSEEQLRNIENLVNEFIAGHY 624

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V    M  E+A  SGA AL   KY D VRVVS+     G  S   CGG HV++T EI +
Sbjct: 625 SVSKVEMPIEEAKQSGATALFDEKYGDVVRVVSM-----GDVSKEFCGGCHVNNTQEIGV 679

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766
             I+SE SI +GIRRI A TG  A       D+ L ++A+ LK+    N+  +V  + EE
Sbjct: 680 CKIISEESIGSGIRRITAKTGYDAYKEFAAGDQMLHAIAADLKMKGIANLEAKVANVVEE 739

Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             +L+   A  + Q+     +       +      +   +S  D   LK + + L+ K +
Sbjct: 740 ANELKKQLATLQSQMLALKANDLENTIEECNGHKLLFANLSGADGNALKDIANNLKAKYE 799

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ L   S++K   V       + +     DL R +A ++  G GGGRP +AQSGG +
Sbjct: 800 DIVVFLASASEDKITFVAAAGKAAVANGVKCGDLVRQAA-MICDGKGGGRPDLAQSGGKD 858

Query: 882 GNKADQAIAGVASFL 896
            +K ++A+  V + L
Sbjct: 859 PSKCEEAMKFVKNML 873


>gi|327473314|gb|EGF18734.1| alanine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 872

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/915 (35%), Positives = 492/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ K  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKKDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F           
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESVF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ + AIV     VE   SG    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      +KA      H +     L    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLDPLALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPDLLAAVAEKL 872


>gi|196003434|ref|XP_002111584.1| hypothetical protein TRIADDRAFT_23916 [Trichoplax adhaerens]
 gi|190585483|gb|EDV25551.1| hypothetical protein TRIADDRAFT_23916 [Trichoplax adhaerens]
          Length = 959

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/964 (30%), Positives = 461/964 (47%), Gaps = 84/964 (8%)

Query: 3   NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
               IR  F++FF +   H  +PSSS +P +DPTL+F N+GM  FK I+ G   P     
Sbjct: 6   TSEQIRQMFIDFFVEKYNHLFVPSSSTVPHDDPTLLFANAGMNQFKPIYLGTVDPKSEMA 65

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG +FK+ +I  AW+LL  
Sbjct: 66  TYRRVVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDFFKKESIDWAWELLVD 125

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +   R+Y+T +  DE        E   +W    G++ ++++     DNFW M +TGP
Sbjct: 126 VYKMPAERMYVTYFGGDEKSGLQPDYETKNIWLAK-GIAPERVLPFGLQDNFWEMGDTGP 184

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D+           + +    +E+WNLVF QF ++  +    LP+  +DTG 
Sbjct: 185 CGPCTEIHYDRI-GGRDAAYLVNMDDPEVLEVWNLVFTQFNREADKSLRPLPRKYVDTGA 243

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHL 279
           GLER+ +V+Q   +NYD DLFK L      +TG +               + +RV+ DH 
Sbjct: 244 GLERVTSVIQGVMSNYDTDLFKPLFDKIRSLTGAREYRGLLGDADVDGIDMAYRVLADHA 303

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  I+DG  P + GRGYVLRRI+RRA+ YA   L     +   L+     ++G A+P
Sbjct: 304 RTLTIAISDGGKPDSTGRGYVLRRILRRAVRYATEKLDAKPGMFAQLVNVAVEKLGGAFP 363

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +   ++ + +  E+ +F KTL RG  + +  +     D +L G VA++LYDT+G P+
Sbjct: 364 EVTKDPQMVIDIINEEEAQFLKTLSRGRRMFEREVLKAK-DGVLPGFVAWRLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   +   +GL+ ID+  + +A ++ +  +R    G+       I  ++K+        
Sbjct: 423 DLTHIMAEEKGLS-IDMDGYEKAKQDSQELSRGKDTGVDDTVALGI-HAIKDLE------ 474

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
             DL                       +G+++ + A+  +   V E ++G +  ++ D++
Sbjct: 475 --DLAIPLTDTSPKYNYESDGNGGYTIHGIAAKISALRYEKSFVNEVLTGSRCGIILDKS 532

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDY 577
            FYAE GGQ+ D G  +          V        +V H  +  G  +   ++ L +D 
Sbjct: 533 CFYAEQGGQIYDLGFIVNSDDEDTEFKVTDVQIMGGYVLHVGITEGTFKVGDTVQLQVDS 592

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + RR +  NH+ATH+L+ AL   LG    Q GS + PD LRFD T    +T+ ++K+ E+
Sbjct: 593 ERRRTVMNNHTATHILNFALREQLG-EADQRGSLVAPDRLRFDFTAKGAMTTQQIKATEE 651

Query: 638 NVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVE-----------YED 685
            V +II Q   V  +      A    G   +    Y D VR+VSV               
Sbjct: 652 IVGNIIEQKQQVFAKDATLAKASAIQGLRQVFAETYPDPVRIVSVGVSVDDLLEDPTGPS 711

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
           G   S   CGGTH+ ++G++    I SE  I  GIRRI A+TG  A+  +    E L  L
Sbjct: 712 GLKTSVEFCGGTHLKNSGDMEAFVISSEEPIAKGIRRIIALTGSDAKKKVTKLQESLSEL 771

Query: 746 ASF-------LKVSQGNVVG-------------RVEEIWEEYRK-------LQLIHAKRK 778
                     LK  +  +               R +E+ E  +K       ++     ++
Sbjct: 772 MKLGRADQTSLKAKKRQITELNDSIAAVTLQQWRKDELRETLKKVKKTIIDIEKAADSKR 831

Query: 779 LQLNVEDLS--CHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEK- 834
            Q  VE       +  D++ +  ++   + SK L S +        +   ML  +  E  
Sbjct: 832 SQEVVEKAKEIASQSKDLSAVVEVLEAGLSSKVLDSALKQFHSIAPNTAAMLFSVDSEGR 891

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           + + L  V E ++ +  +A D  +    VL  G GGG+P  AQ  G N    + A+    
Sbjct: 892 RVTCLCQVPEAIMKKGLSASDWVKSVMNVLE-GKGGGKPTSAQGSGTNVAGLNNALNLAK 950

Query: 894 SFLK 897
            F K
Sbjct: 951 EFAK 954


>gi|296110668|ref|YP_003621049.1| alanine--tRNA ligase [Leuconostoc kimchii IMSNU 11154]
 gi|295832199|gb|ADG40080.1| alanine--tRNA ligase [Leuconostoc kimchii IMSNU 11154]
          Length = 893

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/931 (35%), Positives = 491/931 (52%), Gaps = 72/931 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKEFSSAEVRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSVIPNN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEM+GNFS G YFK+  I  AW+LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKDDVIPWAWELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD+  LY+TVY +D+EA K+W++ + +S D I  +   DNFW + E GP GP SEIF
Sbjct: 117 WYGLDKELLYVTVYPKDQEAKKIWQEKTDISNDHIYEV--EDNFWDIGE-GPSGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227
           FD+G                 E ERY+EIWN+VF QF       +  +   LP  +IDTG
Sbjct: 174 FDRGTSFQDLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNSQYPELPHKNIDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-----TGMKYEGNNIVNHRVIVDHLRSS 282
           MGLER+ +V Q    N+D DLF  +IQA+ ++          + ++  + +VI DH+R+ 
Sbjct: 234 MGLERLVSVFQNGRTNFDTDLFLPIIQATSELSNNFVYDSNKDSDSNTSFKVIADHIRAI 293

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +F I DG LP+NEGRGYV+RR++RRA+ + + LG     +  L+P +   M S YPE+ +
Sbjct: 294 TFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGIQGEFLTTLVPIVGEIMKSYYPEISE 353

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDI 400
               I++T+ +E++RF  TL  GL LL+ V+S   L     L+G VAFKL DT+G PL++
Sbjct: 354 NTAKIQKTIAAEEKRFNATLTGGLALLNDVISDVKLAGKTQLSGAVAFKLSDTYGFPLEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q+     GL    +        ++     A S     G    +   LK     ++++G+
Sbjct: 414 TQEQASDAGLTVDVVGFNEALQAQRTRARAARSTDKSMGVQNAVLTDLK---VPSKYVGW 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-----IVEEAVSGQKVEVVF 515
                                        + V AI+ Q E     +++ AV+  ++++VF
Sbjct: 471 SETAVDG----------------------AEVVAIIGQNETGIDALLQTAVANSQLQLVF 508

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D TPFYAE GGQ+ D G  + D    +      + A      H +      +    + L 
Sbjct: 509 DTTPFYAEMGGQVADFGDVLNDENTLIGKIIDVQNAPNGQHIHTVEVLSDFKLGDKVNLR 568

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D      +S NH+ATH+L  AL  ++G  + Q GS + P  LRFD TH  P++ A+L +
Sbjct: 569 VDMARHTAVSKNHTATHMLDQALRNVIGGDIHQAGSLVEPKYLRFDFTHEGPVSEADLDA 628

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           I+  +N  IA+NLPV     + E A   GA A+ G KY + VRVVS+     G  +    
Sbjct: 629 IDTLINAEIAKNLPVSWLETDIETAKKMGAVAVFGEKYGELVRVVSI-----GEFNKEFD 683

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ- 753
           GGTHV++T E+ L  IVSES I AGIRRIEA+TG +A +    +++ LK +A+ +K  + 
Sbjct: 684 GGTHVNATSELGLFKIVSESGIGAGIRRIEAVTGLQALALYKSEEKALKEIANAVKAQKL 743

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKE 808
             V  +V ++  E +  Q +    + QL              I D ++++  +       
Sbjct: 744 TEVPTKVADVQTELKAAQRMIESLEKQLANAAADDVFTHIETINDHSYITAKLQVSGIDG 803

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGG 867
           L+ V D  ++   S I++L     + K ++++  + D       A DL +  A  +GGGG
Sbjct: 804 LRQVADNWKETKPSDILVLAA-DVDGKVNLIVAASPDANAAGIKAGDLIKAIAPKVGGGG 862

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            GGRP MAQ+GG N    D A A VA FL +
Sbjct: 863 -GGRPDMAQAGGKNPAGIDAAFASVADFLAE 892


>gi|241956830|ref|XP_002421135.1| alanyl-tRNA synthetase, putative [Candida dubliniensis CD36]
 gi|223644478|emb|CAX41294.1| alanyl-tRNA synthetase, putative [Candida dubliniensis CD36]
          Length = 969

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/965 (31%), Positives = 464/965 (48%), Gaps = 91/965 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S +R+TFL++F++  H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 25  TASKVRSTFLDYFKQQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFAS 84

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK 
Sbjct: 85  LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKV 144

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T +  DE        EA   W K  G+  D I+  +  DNFW M + GPC
Sbjct: 145 YGLKEDRLYVTYFGGDEKQGLEPDLEAKNFWLK-VGVPEDHILPGSVKDNFWEMGDQGPC 203

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    IE+WN+VF+Q+ ++       LP   IDTGMG
Sbjct: 204 GPCSEIHYDRI-GGRNASDLVNMDDPNVIEVWNVVFIQYNREADGNLRTLPNKHIDTGMG 262

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ K +NYD D+F  +     ++TG++                 +RVI DH+R
Sbjct: 263 FERLVSILQNKFSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHVR 322

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F I DG +P NEGRGYVLRRI+RR   Y R             L+  +  +    +P
Sbjct: 323 TLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFP 382

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           E+      ++E L  E+  F KTLDRG  L +    ++    ++ L+G   ++LYDT+G 
Sbjct: 383 EISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 442

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F +A EE R  ++      G    +    +L E      
Sbjct: 443 PVDLTRLMAEEAGLK-IDEDGFERAKEESREASKGSGTKDGKTLVKLDVHALSE------ 495

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515
                        + D               V + V  I    + VE       +  ++ 
Sbjct: 496 -----------LDQNDTIPKTNDEFKYGLENVKAKVVGIYDGSKFVESIEDPSIQYGILL 544

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+TPFYAE GGQ  DTG  + DG         +   G  +H   +  G L     ++ T 
Sbjct: 545 DKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQVYAGYVLHTGNIVDGKLNVGDEIIATY 604

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD ++ + +T  EL+ I
Sbjct: 605 DELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSYKQAVTPKELEKI 664

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683
           E   N  I  N  V  + ++   A   +G  A+ G  Y D VRVVS+             
Sbjct: 665 EAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDDLLADPTN 724

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQDE 740
                 S   CGGTHV+ TG+I  L IV ES I  GIRRI A+TG  A          ++
Sbjct: 725 AKWHEISIEFCGGTHVAKTGDIKDLVIVEESGIAKGIRRIVAVTGHDAHHVQKVANEFEQ 784

Query: 741 KLKSLASF----------------LKVSQGNVVGRV----------EEIWEEYRKLQLIH 774
           ++ + AS                 LK    +V+ +           + I +  +  Q   
Sbjct: 785 EIDAAASLPFGVVKESKSKELGVALKKLSISVLDKQRLTEKFNKLDKSIKDNLKARQKEE 844

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K+ L +    L+  +      +SH+    ++K +   ++ ++K+ +S  I L+    + 
Sbjct: 845 TKKTLDVVNNWLNDKENVSSFLVSHVPITANAKAITEAINLIKKQDKSKSIYLLTGETD- 903

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +    V+++ + +  NA +LA+  ++ + GG  GG+ ++ Q  G      + AI  V 
Sbjct: 904 KVAHGCYVSDEAIAKGINANELAKSVSENI-GGKAGGKGNIVQGMGDKPEGINTAIEEVT 962

Query: 894 SFLKK 898
              K+
Sbjct: 963 KLFKE 967


>gi|260903835|ref|ZP_05912157.1| alanyl-tRNA synthetase [Brevibacterium linens BL2]
          Length = 884

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/919 (35%), Positives = 489/919 (53%), Gaps = 58/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  +L++F+ NGH ++PS+S+I  +DP+++F  +GMV F    TG+E   +   
Sbjct: 1   MKTAEIKQRWLDYFEANGHAVVPSASVI-SSDPSILFNIAGMVQFIPYLTGREPAPFNRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++ VG+T RH TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSVQKCVRTG----DIEEVGKTTRHGTFFQMNGNFSFGDYFKREAIRFAWGLLTNSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L+ TV+++D E   LW + + +  ++I      DNFW   + GP G CSEI+
Sbjct: 116 GLGFDKNLLWATVHEDDLETIDLWLEETSIPRERIQPRDNEDNFWHTGQPGPGGYCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           FD+G    G   G   + +RYIEIWNLVFM+FE      + +      LP  +IDTGMGL
Sbjct: 176 FDRGPDY-GVEGGPVADEDRYIEIWNLVFMEFELSEVRSKVDFDIAGELPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I+A+ +++G +Y  ++  +   RV+ DH+RSS  +I D
Sbjct: 235 ERVAFLLQGVENMYEIDEVFPVIEAASRLSGHRYGADHDADVQMRVVADHVRSSLIIIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RRA+   RLLG T  ++  LLP     M  +YPEL      I 
Sbjct: 295 GVRPGNEGRGYILRRLLRRAVRAMRLLGVTSEVLPELLPVSMESMKLSYPELETDFDRIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
               +E++ F +TL+ G  L     + L   D+ L+GDVAF L+DTHG P+D+  ++   
Sbjct: 355 RIAYAEEKAFLRTLESGTQLFQNAAASLPASDKTLSGDVAFALHDTHGFPIDLTLEMASE 414

Query: 408 RGLAGIDIISFNQALEEQRSR-ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
           +G   +D   F   + EQR+R         G G  +   +S   + GA++F+GYD L   
Sbjct: 415 QG-VNVDEEGFRALMSEQRTRAKADAKAKKGGGHADLSAYSALLEDGASEFVGYDRLEAD 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V+ IV  G   E    GQ  +++ D TPFYAEAGG
Sbjct: 474 -----------------------SRVRGIVVDGLAQEVLTPGQTADLILDLTPFYAEAGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G   G G   ++ DVQ   +G+  H   V  G +     ++  +D+ +R Q S  
Sbjct: 511 QRADIGLIKGHGFTARVLDVQNPIKGLPAHRVEVIDGEIHVGAEVLAVVDHDHRFQGSQA 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHL+H AL  ILG+H  Q GS   P  +RFD +  +  +      IED  N  +  N
Sbjct: 571 HTATHLVHAALREILGTHAVQAGSMNQPGYMRFDYSFPEAPSQQMRAEIEDVANLAVRSN 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T  +  EDA  SGA AL G KY + VRVV +    GG  S  LCGGTHV S+ E+ 
Sbjct: 631 YEVGTEFLPFEDARKSGAMALFGEKYPNIVRVVDI----GGPFSRELCGGTHVGSSSEVG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++SE+S+ +G+RRIEA  G  A   L  +   + SL+  LKV   +V  RV ++  +
Sbjct: 687 PISVLSEASVGSGVRRIEAAVGMDAFRSLAAERSIVSSLSDMLKVPGTDVKERVGDLMSK 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV-DSKELKSVMDALQKKI 820
            +  +   A+   Q  +        +   +    F+   + +V ++ ++++V+  L+ ++
Sbjct: 747 LKDAEKEIARLNSQQLLASAGKFLDNAETVGSTLFVVADLGDVTNAGDIRTVVTDLRGRV 806

Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLDRFN-AVDLARLSAKVLGGGGGGGRPHMAQSG 878
                ++L   +   K  V+I  T    +  + A  L  L+   LGGGG GG+P +AQ G
Sbjct: 807 NERSAVVLGIGTGNSKPVVVIATTAAAREEGHQAGKLVSLACGELGGGG-GGKPDLAQGG 865

Query: 879 GPNGNKADQAIAGVASFLK 897
           G + +    AIA V + L+
Sbjct: 866 GSDVSAIPSAIAAVKAALQ 884


>gi|324995376|gb|EGC27288.1| alanine--tRNA ligase [Streptococcus sanguinis SK678]
          Length = 872

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 489/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + F 
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEDFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F           
Sbjct: 416 VMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ + AIV     VE   SG    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      +KA      H +     L    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDAAGNLVAQVRDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPALLAAVAEKL 872


>gi|108804197|ref|YP_644134.1| alanyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
 gi|122381811|sp|Q1AWA6|SYA_RUBXD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|108765440|gb|ABG04322.1| alanyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
          Length = 882

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/919 (33%), Positives = 467/919 (50%), Gaps = 73/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF +  H + PSSSLIP +DPT++ T +G+  F   F GQEKP +   
Sbjct: 4   MKSAEIRRRFLDFFAERDHRIYPSSSLIPHDDPTVLLTTAGVQQFIPYFLGQEKPPHPRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQKC R      DL+ VG    H TFFEMLGNFSFG YFK+ AI  AW+ LT+   + 
Sbjct: 64  ASVQKCFRT----QDLEEVG-DPSHLTFFEMLGNFSFGDYFKKEAIGWAWEFLTEGLGIP 118

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSE 174
             RL++T+++ DE      EA + W +  G+   KI  +  ++N+W    ETGPCGPCSE
Sbjct: 119 PERLWVTIFEGDENAPEDLEAKRFWME-VGVPEHKIFGLPKSENWWGPAGETGPCGPCSE 177

Query: 175 IFFDQGECIPGGLPGSS--------EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           I++D GE    G P           E   R++E+WNLVF Q+EQ        L +  IDT
Sbjct: 178 IYYDYGEEFGPGDPLEDARYGPGGEEGDARFLEVWNLVFNQYEQLRDGSLRPLEQTGIDT 237

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSF 284
           GMGLER+A V+Q   + Y+ DL+  +I+ + + TG+            R++ DH R  +F
Sbjct: 238 GMGLERIAAVMQGARSVYETDLYAPVIERAREYTGVALGDGEETDRALRILADHARGMAF 297

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           LIADG+ P N+ R YVLRRI+RRA   A    G     +  L   +   MG  + EL +A
Sbjct: 298 LIADGVRPGNQRREYVLRRIIRRATREAYGRFGLDAGRIASLAETVADYMGGFWGELREA 357

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  I   + SE  RF      G+ LL+  +S L       G+VAF L+DT+G P+++ ++
Sbjct: 358 RDEIRRVVESEAARFIDIYHSGMRLLEAEISRLEGGR-FPGEVAFTLHDTYGFPVEVTRE 416

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +L  RG   +D   F +A+E QR RAR    G           + +++   ++F+GY+  
Sbjct: 417 VLAERG-ISLDEAGFRRAMERQRERAREALEGHERAVA-----AFRDREIRSRFVGYER- 469

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                     + + AI    E V +A    ++ +V ++ PFYA 
Sbjct: 470 ----------------------EQAETRILAI----EPVPDAEG--ELYLVLEENPFYAT 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+ DTG    +  +L++ D     +   +  A VERG       +V +I+   R+Q+
Sbjct: 502 GGGQVADTGWISSEKGQLEVVDAIPAGDYQVL-RARVERGRFEAGDEVVASINRVRRQQI 560

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATH+LH AL  +LG  V Q GS + PD LRFD  +S  +T  EL  +++     I
Sbjct: 561 EANHTATHILHWALRAVLGKEVVQAGSYVGPDRLRFDYRYSGRVTEEELARVQELCLLKI 620

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N PV       E+A   GA  L G KY + VRVV V+       S  LCGGTHV  T 
Sbjct: 621 TENQPVRYYTTTLEEARKLGAIMLFGEKYGELVRVVEVDG-----FSRELCGGTHVRGTA 675

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEE 762
           EI    I S     A + RIE ITG+ A  +L    E  + LA+ L++     +   V  
Sbjct: 676 EIGAFKITSNRRHGADLYRIEVITGREALYYLTRAAETAERLAAELRLPGVEELPEAVSR 735

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE ++ +    ++ L+  +E++     +   I     ++  ++  D ++L+ + D ++
Sbjct: 736 LREELQQAREELRQQALKRGLEEVGSLVENAESIDGTKVVTGRVAAADVRDLRQISDDVR 795

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            ++   + +++    + KA ++     ++  R  A D+ R +A +LGGGG GG P MAQ+
Sbjct: 796 NRVGGPVAVVLAADLDGKAVLVANFHPEVSKRVKAGDVVREAAGILGGGG-GGSPTMAQA 854

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N      A+  V   L
Sbjct: 855 GGGNLEAIPAALERVRQIL 873


>gi|319935502|ref|ZP_08009937.1| alanyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319809533|gb|EFW05950.1| alanyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 869

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/913 (35%), Positives = 502/913 (54%), Gaps = 65/913 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL++F+  GH + P +SLIP NDPTL++ N+G+   K  F G E+P  
Sbjct: 1   MKQLTGNQVRQMFLDYFKSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEQPAC 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  +
Sbjct: 61  HRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEDAIPFAWEFLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ +LY+TVY +D++A+++W ++  +    I++  T+ NFW + E GP GP SEIF
Sbjct: 117 WIGFDKEKLYVTVYTDDDDAYRIWTEVCHVDPSHILK--TDGNFWEIGE-GPGGPDSEIF 173

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           +D+G                 E +RYIEIWN+VF QF+      ++E   LP+ +IDTGM
Sbjct: 174 YDRGVEYDPDGLGEKLFFEELENDRYIEIWNVVFSQFDCNPTIDRKEYKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+ +++Q    N+D D F  +I A+E++T ++Y  +N + +RVI DH+R+ +F ++D
Sbjct: 234 GLERLVSIIQGGETNFDTDFFLPIIHATEEMTNVRY-EDNKMAYRVIADHIRTVTFALSD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G L  N GRGYVLRRI+RRA+ Y + +G     M  L+  +   M   Y  L      + 
Sbjct: 293 GALFDNAGRGYVLRRILRRAVRYGKKIGIDHSFMYKLVYVVADIMKEFYDYLPAKADYVS 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             ++ E+E F KTL  G  LL+ +L      + L+G  AFKLYDT+G PL++  +I    
Sbjct: 353 GLVKKEEEAFHKTLSNGEKLLNQMLKKTIDQQ-LDGKDAFKLYDTYGFPLELTVEIAEET 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   +D   F   ++ Q+ RAR       S +++K    L      +QF+ YD       
Sbjct: 412 GFT-VDEAGFKAEMKAQQVRARNARGDNESMSSQK--PDLMAFDTPSQFV-YDH------ 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                            + +++ V A    G   +E  +  + E++ DQT FYAE GGQ 
Sbjct: 462 -----------------SPITAKVIATFIDGVKCDEITT--QGEIILDQTTFYAEMGGQC 502

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    +   L +T V +      +H   ++ G ++    L+L +D   R  +  NH+
Sbjct: 503 ADTGTMSNETTLLDVTYVSRAPRLQHLHVIKIKNGSVKVGDELILKVDAHKRALIQNNHT 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL T+LG HVSQ+GS +  + LRFD TH + +T  E++ +ED VN+ I   L 
Sbjct: 563 ATHLLQKALKTVLGEHVSQSGSYVDAERLRFDFTHPQKMTDEEIRKVEDQVNEQIFNGLN 622

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V    M++++A+ SGA AL   KY D+VRVVSV     G +S  LCGG HVS++ +I L 
Sbjct: 623 VQIEFMSKDEAMHSGAMALFDEKYGDQVRVVSV-----GDYSKELCGGCHVSNSAQIALF 677

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767
            I SE S+ +GIRRIEA+T Q+A   +   +E +++++   K+ ++  +V +V +  +E 
Sbjct: 678 KIESEESVGSGIRRIEAVTAQKAYQSMKKSEETIQTISELFKLKNRNEIVEKVTQFIDET 737

Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +++    +   +LN  +         +I  V F+ ++    D+   K +   L+ ++ +
Sbjct: 738 HEVKKERDQYLDKLNSIEAKEKSKNIEEINGVQFL-YVSESKDASIAKQMTFELRDQLTN 796

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+++LV    E K S  + +T  ++   + A DL ++  + + GG GGG+P  AQ G P+
Sbjct: 797 GVVVLVS-EYEGKTSYFVGLTASMVKNGYKAGDLVKMINE-VTGGRGGGKPDFAQGGCPS 854

Query: 882 GNKADQAIAGVAS 894
               + AI  + S
Sbjct: 855 QEHINDAIKQIKS 867


>gi|306833055|ref|ZP_07466186.1| alanine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304424764|gb|EFM27899.1| alanine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 888

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/918 (35%), Positives = 489/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 17  MKQLTSAQVRQIWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 76

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  +
Sbjct: 77  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPE 132

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 133 WFDFPKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 188

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 189 FDRGEDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 248

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 249 GLERLVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIG 308

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I
Sbjct: 309 DGALPGNEGRGYVLRRLLRRAVMHGRRLGIKETFLYKLVPTVGKIMESYYPEILEKQDFI 368

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G  +LD +L+ L     + + G   FKLYDT+G P+++ +++ 
Sbjct: 369 EKIVKREEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELA 428

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G   ID   F  A++EQ+ RARA+ +  GS   +    +L      + F  Y+    
Sbjct: 429 EDKGFK-IDHAGFEAAMKEQQERARANVVKGGSMGMQN--ETLSSITEESVFS-YED--- 481

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + S +  I+   E  E    GQ   +VF +TPFYAE G
Sbjct: 482 --------------------EVLDSTMSVIIADNERTEAVSEGQ-ALLVFAKTPFYAEMG 520

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G    D   +       +KA      H +     L    +  L ID + R ++ 
Sbjct: 521 GQVADHGVIKNDKGDIVARVTDVQKAPNGQALHTVEVLASLSVGTTYTLEIDSKRRHRVI 580

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I 
Sbjct: 581 KNHTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIW 640

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PV T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T E
Sbjct: 641 NAIPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAE 695

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  IV E  I +G RRI A+T + A      ++E LK++A+ LKV Q   V  +V  +
Sbjct: 696 IGIFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASL 755

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+  KLQ  +A+ K +              +   V +++  ++  D+  L++  D  ++
Sbjct: 756 QEQLHKLQKENAELKEKAAAAQAGDVFEDVKEANGVRYIASQVTVSDAGALRTFADNWKQ 815

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++L     EK   ++    +D     +A +L +  A ++  G GGG+P MA +G
Sbjct: 816 KDYSDVLVLAAAIGEKVNVLVASKAKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAG 870

Query: 879 GPNGNKADQAIAGVASFL 896
           G +  K    +A VA  L
Sbjct: 871 GSDAAKIADLLAAVAENL 888


>gi|297748879|gb|ADI51425.1| Alanyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749759|gb|ADI52437.1| Alanyl-tRNA synthetase [Chlamydia trachomatis D-LC]
          Length = 924

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/887 (36%), Positives = 482/887 (54%), Gaps = 45/887 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   
Sbjct: 50  MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 109

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D
Sbjct: 110 TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFD 169

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+GE
Sbjct: 170 PDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 227

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E 
Sbjct: 228 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 287

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RG
Sbjct: 288 ETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 347

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F
Sbjct: 348 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 407

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +        ID+ +F
Sbjct: 408 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTF 466

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +   E + R+R ++    +       F   +    ++FIGYD L    F          
Sbjct: 467 EKLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF---------- 514

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    + 
Sbjct: 515 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCES 561

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL 
Sbjct: 562 GTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 621

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D
Sbjct: 622 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 681

Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            ++S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++ 
Sbjct: 682 VMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 735

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L    A  
Sbjct: 736 TGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADL 795

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + QL  + +        KI D +++ + ++E + + ++   +A+ K+I +  I L    K
Sbjct: 796 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 855

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             +  VL  V++DL  R   A  L         GG  GG+   AQ  
Sbjct: 856 NGRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 901


>gi|328945496|gb|EGG39647.1| alanine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 872

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/915 (35%), Positives = 492/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAIPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F           
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVIKGGSMGMQN--ETLQAITVESAF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELTAELLAIVADDAAVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      +KA      H +     L    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLDPLALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPDLLAAVAEKL 872


>gi|195155623|ref|XP_002018701.1| GL25810 [Drosophila persimilis]
 gi|194114854|gb|EDW36897.1| GL25810 [Drosophila persimilis]
          Length = 966

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/973 (30%), Positives = 449/973 (46%), Gaps = 87/973 (8%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           M       +R  +L FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P  
Sbjct: 1   MKFLTAKEVRDAYLGFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 61  EMSKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEF 120

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT    L + RLY+T +  DE        E  +LW  + GL  + I+  +  DNFW M E
Sbjct: 121 LTNRLHLPKDRLYVTYFGGDEASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGE 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID
Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276
            GMG ER+ +V+Q K +NYD DLF  L +A +            G        + +RV+ 
Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGADDVDGIDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGTLVNTVVDLLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PE+ +    I + +  E+ +F KTL RG  LL+  +  LG   I+ GDVA++LYDT+G
Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQSIIPGDVAWRLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ Q +   +      +       E  +  +   S G G+   E+I   +       
Sbjct: 419 FPVDLTQLMAEEKS-----LEIDMAGYEAAKQNSYVLSQGKGASKIEEINLDVHAISQLQ 473

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +  G        F  +   V  ++         +S + A+  + + V E  +GQK  +V 
Sbjct: 474 E-QG-VPPTNDSFKYKYEAVSEERDSAYNYQECTSKIVALRFENQFVNEISNGQKAGIVL 531

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE+GGQ+ D G  +            +    G ++ H  V  G L+    L L 
Sbjct: 532 DKTNFYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELQLH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDEERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKAAMTIEQVAK 651

Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682
            E    D++ +N+P+  +           G  ++    Y D VRV+S             
Sbjct: 652 TEQLTKDMVYKNVPIYAKESKLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   +   +   
Sbjct: 712 AEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFE 771

Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAKRKLQ 780
           + +   LK +                +V   E+I          +E R L     K    
Sbjct: 772 QEIVK-LKATIDADKSGKDSKSHVKEIVELTEQISHATVPYVKKDEMRNLLKGLKKTLDD 830

Query: 781 LNVEDLSCHKIA-------------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826
                 +   +                N +   +   ++ K L + +  ++ ++     M
Sbjct: 831 KERSLRAAVSVNVVERAKELCEANPGANVLVQQLEAFNNTKALDAALKQVRTQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
              +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N ++
Sbjct: 891 FFSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSPTL-GGKGGGKPESAQASGSNYDR 949

Query: 885 ADQAIAGVASFLK 897
            ++ I     F +
Sbjct: 950 VEEIIQLATKFAQ 962


>gi|329116323|ref|ZP_08245040.1| alanine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326906728|gb|EGE53642.1| alanine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 872

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 491/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSAEIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVTPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y  D +++  W  + G+    +I +   +NFW +   GP GP +EIF
Sbjct: 117 WFDFPKEKLYMTYYPADTDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF    +    E   LP  +IDTG 
Sbjct: 173 FDRGESFDPENIGIRLLEEDLENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I+  E ++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIREVETLSGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  +  +  L+  +   M S YPE+++ K  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINQTFLYKLVMVVGQIMESYYPEILEKKDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L ++  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDQLLAQLKEEGKDTLEGKDIFKLYDTYGFPVELTEEMA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHDGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLANITELSEFN-YDR--- 465

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 +   +  IV   E  E    GQ   +VFDQTPFYAE G
Sbjct: 466 --------------------EKLEGQLSVIVVDNERSEAVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G  + D   +    +  +KA      H +     L      +L +D++ R  + 
Sbjct: 505 GQVADHGVILNDNGEVIANVIDVQKAPNGQALHTVEVLANLSVGTKYMLKVDHKRRFAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G H +Q GS    + LRFD TH + +T+ EL+ IE+ VN  I 
Sbjct: 565 KNHTATHLLHAALHNIIGKHATQAGSLNEEEFLRFDFTHFEAVTAEELRRIEEEVNQQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + V T   + E A + GA AL G KY   VRVV +     G +S  LCGGTHVS+T E
Sbjct: 625 NAIKVQTIESDVETAKSMGAMALFGEKYGKLVRVVVI-----GDYSVELCGGTHVSNTSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+T ++A      +++ LK +AS +K  Q   V  +V  +
Sbjct: 680 IGLFKIVKEEGIGSGTRRILAVTSKQAFEAYRKEEDALKEIASTIKAPQIEQVPTKVASL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E+ R+LQ   A+ K +              ++    +++  +S  D+  L++  D  ++
Sbjct: 740 NEQVRELQKEVAELKEKAAAAQAGDVFKDVKEVNGHTYIATQVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S I++LV    EK   ++   +++L    +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDILILVAAIGEKVNVLVASKSKEL----HAGNVIKALAPIVS-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K +  +  V + L
Sbjct: 855 GSDASKINDLLNEVPNQL 872


>gi|307637915|gb|ADN80365.1| Alanyl-tRNA synthetase [Helicobacter pylori 908]
 gi|325998103|gb|ADZ50311.1| Alanyl-tRNA synthetase [Helicobacter pylori 2017]
          Length = 847

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/892 (36%), Positives = 484/892 (54%), Gaps = 57/892 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFEHCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                S+        G + + EA   Q+V V+ ++TPFYAE GG +GD G  +       
Sbjct: 456 ----CSAKALGFFDSGFKEMTEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKGDEEAA 511

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LG
Sbjct: 512 LVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RFEIAKHHSATHLLQSALREVLG 569

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A   
Sbjct: 570 SHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLKSQVEHMPLNQAKDK 629

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RR
Sbjct: 630 GALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRR 684

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q           
Sbjct: 685 IEAVCGKAFYQLAKEENKELKNAKILLKNN--DVIAGINKLKESVKNSQK-------APV 735

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+     E   ++   V
Sbjct: 736 PMDLPVEKIHGVSLVVGVVEQGD---IKEMVDRLKSKHERLLAMVFKKENEH-ITLACGV 791

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                    A   A   A++L GG GGGR   A +GG +  K   A+    +
Sbjct: 792 KNAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAALNLAKN 839


>gi|116514511|ref|YP_813417.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|122274757|sp|Q048Z3|SYA_LACDB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830262|sp|Q1G947|SYA_LACDA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116093826|gb|ABJ58979.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325126223|gb|ADY85553.1| Ala-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 877

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/917 (35%), Positives = 483/917 (52%), Gaps = 62/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S  R  FL+FF ++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + +T+ QK +R     ND++NVG+T RH T FEMLGNFS G YFKE AI  AW+ LT   
Sbjct: 61  RRITSSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
             DLD+ +LY+TVY +D EA ++W ++ GL    I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLDLDKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF +F           P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVPEDDPENYPGGENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E+++   KY     + ++ ++I DH+R+ SF I D
Sbjct: 234 RVLSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP N GRGYVLRR++RRA    R LG     +  L+P +   M S YPE+      I 
Sbjct: 294 GALPGNTGRGYVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RFG TL+ GL LLD ++       D+ ++G  AFK++DT+G P ++  +   
Sbjct: 354 KVVKNEEDRFGATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +GL  +D   F+  +E Q+ RAR     L S  ++    +L +    + F         
Sbjct: 414 DKGLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQD--ETLMKIKDKSVF--------- 461

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+   ++V++A  G+K  ++FD+TPFYAE GG
Sbjct: 462 ---------------EYGVYEEESQLVDIIVDDKLVDKA-DGEKATLIFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     L    +  L ID   R  L  
Sbjct: 506 QVADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVVLPLVKGQTYKLKIDRARREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T   PIT  ELK++E  VN+ I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T   + E     GA AL   KY D+VRVV +        S   CGGTH  +T +I
Sbjct: 626 AIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQM-----DDFSIEFCGGTHCDNTSQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SE +I AG+RRIEA+T + A  +L G+ + L  + + +K      +  ++  + 
Sbjct: 681 GVFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKVDGIQSKIASLQ 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE R  +  +A  + Q+N             + D+  ++ I       +L+ + D  + +
Sbjct: 741 EELRSAEKQNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSE 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +S +++L   S++K   ++ +  + L     A DL +  A + GGGG GGRP+MAQ+GG
Sbjct: 801 GKSDVLILGAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIFGGGG-GGRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFL 896
            N      AI    S L
Sbjct: 860 KNPEGLQDAIDAAVSQL 876


>gi|238883003|gb|EEQ46641.1| alanyl-tRNA synthetase [Candida albicans WO-1]
          Length = 969

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/965 (31%), Positives = 465/965 (48%), Gaps = 91/965 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S +R+TFL++F+K  H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 25  TASKVRSTFLDYFKKQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFAS 84

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK 
Sbjct: 85  LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKV 144

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T +  DE        EA   W K  G+  D I+  +  DNFW M + GPC
Sbjct: 145 YGLQEDRLYVTYFGGDEKQGLEPDLEAKNFWLK-VGVPEDHILPGSVEDNFWEMGDQGPC 203

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WN+VF+Q+ ++       LP   IDTGMG
Sbjct: 204 GPCSEIHYDRIGGRNASA-LVNMDDPNVLEVWNVVFIQYNREADGNLRTLPNKHIDTGMG 262

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ K +NYD D+F  +     ++TG++                 +RVI DH+R
Sbjct: 263 FERLVSILQNKYSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHVR 322

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F I DG +P NEGRGYVLRRI+RR   Y R             L+  +  +    +P
Sbjct: 323 TLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFP 382

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           E+      ++E L  E+  F KTLDRG  L +    ++    ++ L+G   ++LYDT+G 
Sbjct: 383 EISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 442

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F +A EE R  ++      G    +    +L E      
Sbjct: 443 PVDLTRLMAEEAGLK-IDEEGFERAKEESREASKGSGTKDGKTLVKLDVHALSE------ 495

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515
                        + D               V + V  I    + V+       +  ++ 
Sbjct: 496 -----------LDQNDAIPKTNDEFKYGLENVKAKVVGIYDGSKFVDSIEDPSIQYGILL 544

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+TPFYAE GGQ  DTG  + DG         +   G  +H   +  G L     ++ T 
Sbjct: 545 DKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQVYAGYVLHTGNIVDGKLNVGDEIIATY 604

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H + +T+ EL+ I
Sbjct: 605 DELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQAVTAKELEKI 664

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683
           E   N  I  N  V  + ++   A   +G  A+ G  Y D VRVVS+             
Sbjct: 665 EAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDDLLADPTN 724

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQDE 740
                 S   CGGTHV+ TG+I  L I+ ES I  GIRRI A+TG  A          ++
Sbjct: 725 TKWHEISIEFCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGHDAHHVQKVANEFEQ 784

Query: 741 KLKSLASF----------------LKVSQGNVVGRV----------EEIWEEYRKLQLIH 774
           ++ + +S                 LK    +V+ +           + I +  +  Q   
Sbjct: 785 EIDNASSLPFGVAKESKSKELGVALKKLSISVLDKQRLTEKFNKLDKSIKDNLKAKQKEE 844

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K+ L +    L+  + A    ++H+    ++K +   ++ ++K+ ++  I L+    + 
Sbjct: 845 TKKTLDVVNNWLNDKENASSFLVAHVPITANAKAITEAINLIKKQDKTKSIYLLTGETD- 903

Query: 835 KASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +    V+++  +   NA +LA+  ++ + GG  GG+ ++ Q  G      + AI  V 
Sbjct: 904 KVAHGCYVSDEAIVKGINANELAKAVSENI-GGKAGGKGNIVQGMGDKPQGINTAIEEVT 962

Query: 894 SFLKK 898
              K+
Sbjct: 963 KLFKE 967


>gi|319760313|ref|YP_004124251.1| alanyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039027|gb|ADV33577.1| alanyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
          Length = 884

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/915 (36%), Positives = 501/915 (54%), Gaps = 55/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            ++  +R  FL FF K  H+++ SSSLIP ND TL+FTNSGM  FKNIF G EK +++ V
Sbjct: 3   KSIVDVRQEFLNFFHKKEHQIISSSSLIPENDQTLLFTNSGMNQFKNIFLGIEKVLFKRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
            T Q+C+RAGGKHNDL+NVG T RH TFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  VTAQRCMRAGGKHNDLNNVGYTERHLTFFEMLGNFSFGDYFKDSAIEFAWELLTDSNWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +++IT +  D E++ +W K  G+S  ++I+I +        DNFW M   GPCGPC
Sbjct: 123 LSKDKIWITTHICDNESYDIWTKHIGISKKRVIKIGSKNGHYSDSDNFWKMGNIGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           SEIF+D G+  PG  P +      ERY+EIWNLVFMQF Q++      LP +S+DTGMGL
Sbjct: 183 SEIFYDLGDKFPGVPPNNDMTASSERYVEIWNLVFMQFNQRSNGNLESLPMLSVDTGMGL 242

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+  +LQ   +NY ID+FK+LI +  +V  +K +     +  VI DH+R+ +FLI DGI
Sbjct: 243 ERITAILQGMCSNYLIDVFKNLIISISEVMNVK-KSIADRSLYVIADHIRACAFLIKDGI 301

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI+RRA+C+ R LG        L+  L + M      L     LIE+ 
Sbjct: 302 IPDNEGRGYVLRRIIRRAVCHGRKLGVNGIFFYKLVTPLISSMSYITEILCDQVDLIEKI 361

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L +E++ F  TL++GL LL   L  L  ++IL+G VAF+LY T+G PLD+ QDI     +
Sbjct: 362 LFNEEKLFENTLNKGLKLLRKSLIELKNNKILSGRVAFQLYSTYGFPLDLTQDICHEYNI 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID + F+Q + +++ +++  +          I   +     ++ F+GY  +       
Sbjct: 422 K-IDQLEFDQIMLKEKKQSKQLNRFCRVSGDITIPIDI-----SSIFVGYKHVTYR---- 471

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+ Q  E V+   S  +  V+ D TPFY E+GGQ+GD
Sbjct: 472 -------------------AKIIALFQNNEAVKIVKSNTESMVILDFTPFYGESGGQIGD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +   +      KK   I V   I++ G +     +   ++   R+ + +NHSAT
Sbjct: 513 CGYLRAESGGVFEVRNTKKYGNITVQIGILKSGKINVGEEVFAQVNPLKRKLICLNHSAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILGSHV+Q GS I    LRFD +H   +T  ++ S+E+ +N  I  N  + 
Sbjct: 573 HLLHAALLEILGSHVTQKGSLINDRCLRFDFSHYDAMTEKQINSVENFINQQIWSNWVIT 632

Query: 651 TRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             +M  E A  +     L   +YN  VRVV +     G  SS LC GTH  +TG+I L  
Sbjct: 633 EDLMPIESAYNNTDIIMLSKKQYNQEVRVVRI-----GNFSSELCTGTHSKNTGKIGLFV 687

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV E  I AGIRRIEA T   A S +  +   ++++   +     +++ ++  +     K
Sbjct: 688 IVKELGIGAGIRRIEATTKDLALSIIQRKRTLIQNIIQIMHTDDDHLLNKIHALKLFSNK 747

Query: 770 LQLIHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+      K +   + +         I +V  +   I  ++ + +  ++  +++ ++SG+
Sbjct: 748 LEKEIRVLKNKQETQKILSSAHEVYYIKNVPILVKQIENIELETVFYMVGCIKRHLKSGL 807

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I+L+         +++ VTEDL++R   N++D+       + GG GGG+   AQ+   N 
Sbjct: 808 IVLINTRINNSIHLIVSVTEDLIERNHINSLDVVHYIMHNV-GGKGGGKSDFAQAKIDNV 866

Query: 883 NKADQAIAGVASFLK 897
               + +A V   L+
Sbjct: 867 INKSEFVANVKLLLR 881


>gi|322783659|gb|EFZ10997.1| hypothetical protein SINV_01057 [Solenopsis invicta]
          Length = 952

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/950 (31%), Positives = 457/950 (48%), Gaps = 65/950 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
            N   IR  +++FF+  GHE + SSS IP +DP+L+FTN+GM  FK IF G   P     
Sbjct: 5   MNAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPSLLFTNAGMNQFKPIFLGTVDPNSDMA 64

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LT 
Sbjct: 65  KWVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTD 124

Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L   RLY+T +          D+E   LW  + G+ A  ++     DNFW M ETGP
Sbjct: 125 VLKLPADRLYVTYFGGDMKSGLAPDDECKDLWLSL-GIPASHVLPGNMKDNFWEMGETGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           + +    +EIWNLVF+Q+ ++       LPK  ID G+
Sbjct: 184 CGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQYNREPDGSLKPLPKKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +V+Q+K  NYD DLF  L  A E+ TG                 + +RV+ DH 
Sbjct: 243 GLERLISVIQDKRANYDTDLFMPLFDAIEKGTGAPPYKGKIGADDVDGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG +P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +P
Sbjct: 303 RTITIALADGGMPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVELLGDVFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I E +  E+ +F KTL RG  LL+  ++ L    ++ GDVA++LYDT+G P+
Sbjct: 363 EVKRDPQSIIEIINEEEIQFLKTLSRGRNLLNRTIAKLESTNVVPGDVAWRLYDTYGFPI 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL  ID+  + +     + +A+  S     G  ++I   +   +  T+  
Sbjct: 423 DLTQLMTEEKGLK-IDMTGYEE----AKKQAQLISQNKAGGVDDQINLDV---HAITELQ 474

Query: 459 GYDLLRGSKFMKEDRKVLCQ-KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
              +       K D KV    +         +  V A+ +    V+E  SG++V ++ D+
Sbjct: 475 NQGVKPTDDSPKYDYKVTNTVQYNEYDFAPCTGTVIALRRAKAFVDEVSSGEEVGILLDR 534

Query: 518 TPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           T FYAE GGQ+ D G    + D          +   G  +H   V  G LR    +   +
Sbjct: 535 TNFYAEQGGQIFDEGFLVKVDDEATEIRVKNVQVRAGYVLHIGTVGEGKLRKGDKVHTNV 594

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + RR +  NHSATH L++AL  +LG+   Q GS + PD LRFD T+  P+T+ +L   
Sbjct: 595 DTKRRRFVMANHSATHALNYALRKVLGTEADQKGSLVAPDRLRFDFTNKGPMTTKQLLDT 654

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E    ++I  N  + T+  +        G  A+    Y D VRVVS+             
Sbjct: 655 EVATQEMIKDNKQIYTKESSLAIAKTIQGLRAMFEETYPDPVRVVSMGVSVEKLESDPLS 714

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDE 740
           +     S   CGGTH+  T  I    I SE +I  GIRRI A+TG  A   L       +
Sbjct: 715 KAALETSVEFCGGTHLHYTAHIGDFVIASEDAIAKGIRRIVALTGPEATKALRTSTLLQQ 774

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH--AKRKLQLNVEDLSCHKIADV---- 794
           ++ +L   +  S+ NV    + +    + L+      +R  +  V          +    
Sbjct: 775 QILALKEMIANSEINVKE-CDNMRNTLKDLKKSLDDKERAAKAAVATSVVQTAQSIIESN 833

Query: 795 ---NFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLD- 848
                +  ++    ++K L   +  ++   Q    ML+ +     K   L  V++  +D 
Sbjct: 834 PECKVLVEVMEAYSNTKALDLALKKIKAISQETSAMLISVDHNVNKIYALSSVSKSGIDE 893

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              A +  +    ++  G GGG+   AQ+ G N    ++ ++    F  +
Sbjct: 894 GLKANEWVQAIVPLMK-GKGGGKAESAQASGTNIACLNEIVSKAKEFANQ 942


>gi|300811577|ref|ZP_07092061.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497437|gb|EFK32475.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 877

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/917 (35%), Positives = 484/917 (52%), Gaps = 62/917 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S  R  FL+FF ++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLNSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + +T+ QK +R     ND++NVG+T RH T FEMLGNFS G YFKE AI  AW+ LT   
Sbjct: 61  RRITSSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
             DLD+ +LY+TVY +D EA ++W ++ GL    I+++   DNFW + E GPCGP SEIF
Sbjct: 117 WLDLDKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIF 173

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF +F           P  +IDTGMGLE
Sbjct: 174 YDRGQENNDVPEDDPENYPGGENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I A+E+++   KY     + ++ ++I DH+R+ SF I D
Sbjct: 234 RVLSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP N GRGYVLRR++RRA    R LG     +  L+P +   M S YPE+      I 
Sbjct: 294 GALPGNTGRGYVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RFG TL+ GL LLD ++       D+ ++G  AFK++DT+G P ++  +   
Sbjct: 354 KVVKNEEDRFGATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +GL  +D   F+  +E Q+ RAR     L S  ++    +L +    + F         
Sbjct: 414 DKGLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQD--ETLMKIKDKSVF--------- 461

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+   ++V++A  G+K  ++FD+TPFYAE GG
Sbjct: 462 ---------------EYGVYEEESQLVDIIVDDKLVDKA-DGEKATLIFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     L    +  L ID   R  L  
Sbjct: 506 QVADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVVLPLVKGQTYKLKIDRARREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T   PIT  ELK++E  VN+ I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T   + E     GA AL   KY D+VRVV +        S   CGGTH  +T +I
Sbjct: 626 AIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQM-----DDFSIEFCGGTHCDNTSQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIW 764
            +  I+SE +I AG+RRIEA+T + A  +L  + + L  + + +K ++ + +  ++  + 
Sbjct: 681 GVFKIISEQAIGAGVRRIEAVTSKLAYEYLASRSDILDQIQAQVKATKADGIQSKIASLQ 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE R  +  +A  + Q+N             + D+  ++ I       +L+ + D  + +
Sbjct: 741 EELRSAEKQNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSE 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +S +++L   S++K   ++ +  + L     A DL +  A + GGGG GGRP+MAQ+GG
Sbjct: 801 GKSDVLILGAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIFGGGG-GGRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFL 896
                   AI    S L
Sbjct: 860 KKPEGLQDAIDAAVSQL 876


>gi|68475751|ref|XP_718082.1| hypothetical protein CaO19.5746 [Candida albicans SC5314]
 gi|68475886|ref|XP_718016.1| hypothetical protein CaO19.13169 [Candida albicans SC5314]
 gi|74586350|sp|Q5A8K2|SYA_CANAL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS; Flags: Precursor
 gi|46439761|gb|EAK99075.1| hypothetical protein CaO19.13169 [Candida albicans SC5314]
 gi|46439836|gb|EAK99149.1| hypothetical protein CaO19.5746 [Candida albicans SC5314]
          Length = 969

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/965 (31%), Positives = 466/965 (48%), Gaps = 91/965 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S +R+TFL++F+K  H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 25  TASKVRSTFLDYFKKQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFAS 84

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK 
Sbjct: 85  LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKV 144

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T +  DE        EA   W K  G+  D I+  +  DNFW M + GPC
Sbjct: 145 YGLQEDRLYVTYFGGDEKQGLEPDLEAKNFWLK-VGVPEDHILPGSVEDNFWEMGDQGPC 203

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WN+VF+Q+ ++       LP   IDTGMG
Sbjct: 204 GPCSEIHYDRIGGRNASA-LVNMDDPNVLEVWNVVFIQYNREADGNLRTLPNKHIDTGMG 262

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ K +NYD D+F  +     ++TG++                 +RVI DH+R
Sbjct: 263 FERLVSILQNKYSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHVR 322

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F I DG +P NEGRGYVLRRI+RR   Y R             L+  +  +    +P
Sbjct: 323 TLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFP 382

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           E+      ++E L  E+  F KTLDRG  L +    ++    ++ L+G   ++LYDT+G 
Sbjct: 383 EISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 442

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F +A EE R  ++      G    +    +L E      
Sbjct: 443 PVDLTRLMAEEAGLK-IDEEGFERAKEESREASKGSGTKDGKTLVKLDVHALSE------ 495

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515
                        + D               V + V  I    + V+       +  ++ 
Sbjct: 496 -----------LDQNDAIPKTNDEFKYGLENVKAKVVGIYDGSKFVDSIEDPSIQYGILL 544

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+TPFYAE GGQ  DTG  + DG         +   G  +H   +  G L     ++ T 
Sbjct: 545 DKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQVYAGYVLHTGNIVDGKLNVGDEIIATY 604

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H + +T+ EL+ I
Sbjct: 605 DELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQAVTAKELEKI 664

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683
           E   N  I  N  V  + ++   A   +G  A+ G  Y D VRVVS+             
Sbjct: 665 EAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDDLLADPTN 724

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQDE 740
                 S   CGGTHV+ TG+I  L I+ ES I  GIRRI A+TG  A          ++
Sbjct: 725 TKWHEISIEFCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGHDAHHVQKVANEFEQ 784

Query: 741 KLKSLASF----------------LKVSQGNVVGRV----------EEIWEEYRKLQLIH 774
           ++ + +S                 LK    +V+ +           + I +  +  Q   
Sbjct: 785 EIDNASSLPFGVAKESKSKELGVALKKLSISVLDKQRLTEKFNKLDKSIKDNLKAKQKEE 844

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K+ L +    L+  + A    ++H+    ++K +   ++ ++K+ ++  I L+    + 
Sbjct: 845 TKKTLDVVNNWLNDKENASSFLVAHVPITANAKAITEAINLIKKQDKTKSIYLLTGETD- 903

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +    V+++ + +  NA +LA+  ++ + GG  GG+ ++ Q  G      + AI  V 
Sbjct: 904 KVAHGCYVSDEAIAKGINANELAKAVSENI-GGKAGGKGNIVQGMGDKPQGINTAIEEVT 962

Query: 894 SFLKK 898
              K+
Sbjct: 963 KLFKE 967


>gi|324990574|gb|EGC22510.1| alanine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 872

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/915 (35%), Positives = 490/915 (53%), Gaps = 66/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F           
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ + A+V     VE   SG    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELTAELLAVVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      +KA      H +     L    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKDVQETNGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVASFL 896
            +     +A VA  L
Sbjct: 858 QSAIPDLLAAVAEKL 872


>gi|195339200|ref|XP_002036208.1| GM12994 [Drosophila sechellia]
 gi|194130088|gb|EDW52131.1| GM12994 [Drosophila sechellia]
          Length = 966

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/973 (30%), Positives = 456/973 (46%), Gaps = 87/973 (8%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           M       +R  +++FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P  
Sbjct: 1   MKLLTAKEVRNAYMDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 61  EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M E
Sbjct: 121 LTQRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID
Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276
            GMG ER+ +V+Q K +NYD DLF  L  A +  TG                 + +RV+ 
Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G
Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ Q +   + L  ID+  +       +  +   S G G+   E+I   +       
Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +  G        F  +   V  ++         SS + A+  + + V E  SGQK  +V 
Sbjct: 474 E-QG-VPPTNDTFKYKYEAVSDERDSAYNYGVCSSKIVALRFENQFVNEITSGQKAGIVL 531

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE+GGQ+ D G  +            +    G ++ H  V  G L+    L L 
Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSK 651

Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682
            E    +++ +N+P+  +           G  ++    Y D VRV+S             
Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALQKSETFE 771

Query: 743 KSLASFLKVSQGN---------VVGRVEEIWEE-----------------YRKLQLIHAK 776
           + +   LK +  N          V  + E+ E+                  + L+     
Sbjct: 772 QEI-VRLKATIENDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830

Query: 777 RKLQLNV---------EDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826
           ++  L               C    +   +   +   ++ K L + +  ++ ++     M
Sbjct: 831 KERALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K
Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949

Query: 885 ADQAIAGVASFLK 897
            D+ +   + F +
Sbjct: 950 VDEIVQLASKFAQ 962


>gi|139473577|ref|YP_001128293.1| alanyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|205830227|sp|A2RDY3|SYA_STRPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|134271824|emb|CAM30058.1| alanyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
          Length = 872

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/918 (34%), Positives = 489/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G      
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVITEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD    
Sbjct: 413 EDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEESRFE-YD---- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  + S +  I+   E  E    GQ   +VF QTPFYAE G
Sbjct: 465 -------------------TYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D    +      +KA      H +     L    +  L I+ + R  + 
Sbjct: 505 GQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I 
Sbjct: 565 KNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ E
Sbjct: 625 NALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ +
Sbjct: 680 IGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  R  Q  +A+ K +              +   V  ++  +   D+  L++  D  ++
Sbjct: 740 SDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRIIASQVDVADAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A VA  +
Sbjct: 855 GSDASKIAELLAAVAETV 872


>gi|161502129|ref|YP_001569241.1| hypothetical protein SARI_00146 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863476|gb|ABX20099.1| hypothetical protein SARI_00146 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 784

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/820 (41%), Positives = 488/820 (59%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT    F L + RL++TVY+ D+EA+ +W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTGENWFALPKERLWVTVYETDDEAYGIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI+A  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRTLIEAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FL+ADG+LP+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  EL + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQ-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERDIK-VDEAGFETAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVNGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           VE   +GQ+  VV DQTPFYAE+GGQ+GD G   G G    + D QK       H   + 
Sbjct: 388 VEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGVGFTFAVNDTQKYG-QAIGHLGKLS 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+    +   +D   R ++ +NHSATHL+H AL  +LG+HV+Q GS ++   LRFD 
Sbjct: 447 AGALKVGDVVQADVDEARRARIRLNHSATHLMHAALRQVLGAHVAQKGSLVSDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +  +E++ +ED VN  I +NLP+ T IM  E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPSEIREVEDLVNAQIRRNLPIETHIMELEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH   TG+I L  I+SES   AG+RRIEA+TG+ A + +  Q ++
Sbjct: 567 -----GDFSTELCGGTHARRTGDIGLFRIISESGTAAGVRRIEAVTGEGAMATVHAQSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LNDIAHLLKGDSQNLGDKVRAVLERSRQLEKELQQLKDQAAAQESASLSSKAVDLNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   ++ V+ K L++++D L+ ++ S +I+L  +  E K S++  V++D+  R  A +L 
Sbjct: 682 LVSELAGVEPKMLRTMVDDLKNQLGSTVIVLATVV-EGKVSLIAGVSKDVTGRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVQDWV 779


>gi|154508867|ref|ZP_02044509.1| hypothetical protein ACTODO_01378 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798501|gb|EDN80921.1| hypothetical protein ACTODO_01378 [Actinomyces odontolyticus ATCC
           17982]
          Length = 902

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/935 (33%), Positives = 483/935 (51%), Gaps = 74/935 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IRT +L++F+K GHE+ PS SL+    P+++FT +GMVPF    TG E   +   
Sbjct: 1   MRTSEIRTRWLDYFEKQGHEIRPSVSLVSPE-PSILFTIAGMVPFIPYITGVEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAINYAWELLTGSRDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R ++T++D+D+EAF +  K  G+    I+R+   +NFW   + GP GPC+E  
Sbjct: 116 KYGLDGDRFWVTLWDQDDEAFGVLTKQIGMDPKHIVRLPREENFWDTGQPGPAGPCAEWH 175

Query: 177 FDQGECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGM 228
           +D+G               G+RY+E+WNLVF Q+ +  +      P      K +IDTG 
Sbjct: 176 YDRGPEYGPEAVGGTVDPGGDRYLEVWNLVFDQYMR-GEGSGKDYPLLGELDKKAIDTGA 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVD 277
           GLER+A V+Q+K N Y+ID    +I+A+ Q++G +Y             ++ V  RV+ D
Sbjct: 235 GLERLAFVMQDKPNMYEIDEVFPVIEAAMQMSGKRYGLGAAGPEAGAAYDDDVRMRVVAD 294

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H+RSS  LI DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL A    M ++Y
Sbjct: 295 HVRSSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEATMPTLLTASKDAMKASY 354

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTH 394
           PEL      I E   +E++ F +TL  G  +LD  ++         +++G  AF L+DT+
Sbjct: 355 PELEINWKTISEVAYAEEDAFRRTLSAGTTILDAAVATAKESKGAPVISGASAFSLHDTY 414

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--Y 452
           G P+D+  ++   +G   +D   F   + EQ+ RARA +    +G T+   F   EK   
Sbjct: 415 GFPIDLTLEMAAEQG-VSVDEEGFRTLMAEQKERARADARSKKTGHTDVRVFHDIEKAMG 473

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
           G + F+GY                             + V+A++  G     A +  +VE
Sbjct: 474 GGSTFLGYTE-----------------------QAAEATVEALLVDGVAAPAASAPAEVE 510

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+TPFYAE GGQL D G   +  G  +++ DVQ    G+ VH   +  G +      
Sbjct: 511 VILDRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGGMTVGEKA 570

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID + R  ++  H+ATH+++  L  ++   ++Q GS  +P  LRFD  H   +  ++
Sbjct: 571 YAEIDGERRLAIARAHTATHMVYAGLRNVVSEDLTQAGSENSPSRLRFDFRHGSALEGSQ 630

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  IE  VN+ +A++L V T +M+ + A  +GA AL G KY   VRVV++          
Sbjct: 631 LSDIEALVNEKLAEDLAVTTEVMSIDAAREAGAIALFGEKYGSEVRVVTIGD----GFDR 686

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGGTHV +TG I  + ++SE S+ +G+RRI+A+ G  A      +   +  L+  +  
Sbjct: 687 ELCGGTHVPATGHIGRITVLSEGSVGSGVRRIDALVGDGAYEFQAKEHALVNQLSQLVGG 746

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVD- 805
               +  R+E +  + R+ +    K +    +        S   I  V  ++  + E+  
Sbjct: 747 RADELPERIESLLAKLRESEKELEKIRTAQALSQGADLAASAKAIGPVTVVASAVGEMPS 806

Query: 806 SKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKV 862
           +  L+++   ++ ++ +  G ++ +G     K S+++   E   +    A  L R   K 
Sbjct: 807 ADALRTLALDVRDRLGNDRGTVVALGGVIGGKPSLVVATNEAAREASAKAGALVRAVGKH 866

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +GGGG GGR  +AQ GG        AI  +   ++
Sbjct: 867 MGGGG-GGRDDIAQGGGTKPEGIADAIDAIRKEIE 900


>gi|317011441|gb|ADU85188.1| alanyl-tRNA synthetase [Helicobacter pylori SouthAfrica7]
          Length = 847

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/891 (36%), Positives = 485/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF+ NGH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFKNNGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           L+I+V+++D+EA KLW+K   + AD+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LHISVHEKDDEAVKLWEKF--VPADRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++TG+ Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMKEISELTGLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKDMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL  ++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNIFVGYETTECSSQALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + E    Q+V V+ ++TPFYAE GG +GD G  + D     +
Sbjct: 467 --------------DFKEMTETNPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAL 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +  +   +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLQIKK-TLKKGDQVIAQVSDER-LEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +HSK +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  R  Q   A        
Sbjct: 686 EAVCGKAFYQLAKEENKELKNARILLKNN--DVIAGINKLKESVRNSQKTPAPM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL    I   + +  ++ + D KE   ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 738 -DLPIETINGTSVVVGVVEQGDVKE---MIDRLKNKHEKLLAMVF-KQENERIALACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L GG GGGR   A +GG +  K   A+    +
Sbjct: 793 NAP---IKAHAWANEVAQIL-GGKGGGRDDFASAGGKDIEKLQAALNVAKN 839


>gi|261839960|gb|ACX99725.1| alanyl-tRNA synthetase [Helicobacter pylori 52]
          Length = 847

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/891 (36%), Positives = 480/891 (53%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH +  S  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAIYSSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEYKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFELCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTECLAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + +A   Q+V V+ ++TPFYAE GG +GD G    D     I
Sbjct: 467 --------------DFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGVLFKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 737 MDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L GG GGGR   A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQIL-GGKGGGRSDFASAGGKDIENLQAALNLAKN 839


>gi|303277145|ref|XP_003057866.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|313471752|sp|C1MR42|SYAP_MICPC RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|226460523|gb|EEH57817.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 899

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/928 (33%), Positives = 458/928 (49%), Gaps = 78/928 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FLEF++   H  LPSSSL+P  DPT++ T +GM+ FK +F GQE+      T
Sbjct: 10  SGAGIRRRFLEFYEARDHARLPSSSLVPE-DPTVLLTIAGMLQFKPVFMGQEERKVPTAT 68

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVG T RHHTFFEMLGNFSFG YFK+ AI  AW++ TKE+ LD 
Sbjct: 69  TTQKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIAWAWEISTKEYGLDA 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R++I+V+ ED+EA+ +W+   G+  ++I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 125 SRIWISVFREDDEAYAIWRDEIGIPENRIKRMDEADNFWAAGPTGPCGPCSELYWDFHPE 184

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                    ++  R+IE +NLVFM+  +        L + +IDTGMGLERMA +LQ K N
Sbjct: 185 RGVDGSEDLDDDSRFIEFYNLVFMESVRDTDGNMKPLKRKNIDTGMGLERMAQILQGKPN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL + +I A+  + G+ Y+  +       +VI DH R+  +LI+DG+LP+N GRGY
Sbjct: 245 NYETDLIRPIIDAAASMAGISYDDADDATKLKLKVIGDHTRAVCYLISDGVLPSNVGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYT-----EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           ++RR++RR +   RLLG             +         +    ++++   I + L  E
Sbjct: 305 IVRRLLRRVVRCGRLLGVKAPDGAGAFTPAIARVAIGLSEACDANVLKSSQKICDELERE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           + RF  TL RG  +L  +L+           L G+ AF LYDT+G PLDI  D+    G 
Sbjct: 365 ELRFATTLGRGEEILADMLAAAKTKDANAPKLTGEDAFTLYDTYGFPLDITTDVATEAG- 423

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D+  F +A+   R  +R   + +     + +     E    T+F GY  +       
Sbjct: 424 VDVDVDGFEKAMAAARDLSRDARVAVDVTVGDLLGAIADELGEPTRFTGYGSVTEEGV-- 481

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V+A+++ GE V  A +G  VEVV D TPFYAE GGQ+GD
Sbjct: 482 --------------------KVRALLKGGERVASAGAGDTVEVVLDATPFYAEGGGQVGD 521

Query: 531 TG--CAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G      D  +L + D +K     +FVH  +V  G++    ++  T+   +RR+   NH
Sbjct: 522 EGEIILSDDRGKLVVGDCRKAAGGRLFVHSCVVSEGVVGEGDAVTATVSAASRRRAKANH 581

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL   +G  VSQ GS +  + LRFD       T  EL  +E  VN  I   +
Sbjct: 582 TATHLLQSALKMTIGEDVSQAGSLVNFERLRFDFNAPSAPTPEELARVESLVNGWIGDAI 641

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            +    M    A   GA A+ G KY D V        D    S  LCGGTHV +T EI  
Sbjct: 642 DLTAEEMAISRAKEKGATAMFGEKYGDVV-----RVVDVPGVSMELCGGTHVKNTAEIGG 696

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SES I AG+RRIEA++G      L  +D  +K+LA  L+V    + GRV  + E+ 
Sbjct: 697 FKILSESGIAAGVRRIEAVSGPGVVDLLQERDGTVKALAGSLRVPPEEIAGRVSALMEDL 756

Query: 768 RKLQLIHAKRKLQLNVED---LSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +  Q      + +L V     L+   I        +   +  VD   LK+  ++L   + 
Sbjct: 757 KTSQKEAEALRGELAVAKATALASQAIDAPGGAKVLVARMDGVDPAALKAAAESLVAALG 816

Query: 822 SGI-IMLVGISKEKKASVLIVVTEDLLD--RFNAVDLA----------RLSAKVLGGGGG 868
             + ++L     + K  ++   TE +       A  +                       
Sbjct: 817 DDVAVVLGSGGDDGKVGLVASFTEGVQKAGGLKAGVVLGATAKACGGGGGGKPGFA---- 872

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
                  Q+GG + +  D A+      +
Sbjct: 873 -------QAGGRDASALDAALEDAKKTI 893


>gi|307210107|gb|EFN86804.1| Alanyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]
          Length = 972

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/971 (30%), Positives = 456/971 (46%), Gaps = 84/971 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
            +   IR  +++FF+  GHE + SSS IP +DPTL+FTN+GM  FK IF G   P     
Sbjct: 5   MSGKQIRQAYIDFFKNKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMA 64

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LT+
Sbjct: 65  KWVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICSWAWEFLTE 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L   RLY+T +  DE        E  +LW  + G+ A  ++     DNFW M ETGP
Sbjct: 125 TLKLPADRLYVTYFGGDEKNGLAPDNECKELWLSL-GIPASHVLPGNMKDNFWEMGETGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           + +    +EIWNLVF+Q+ ++       LPK  ID G+
Sbjct: 184 CGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQYNREADGNLKPLPKKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279
           GLER+ +V+Q K  NYD DLF  L  A E+           G        + +RV+ DH 
Sbjct: 243 GLERLVSVIQNKRANYDTDLFMPLFAAIEKGTGAPPYQGKIGTDDVNRVDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG +P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +P
Sbjct: 303 RTITIALADGGIPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVELLGEVFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I + +  E+ +F KTL RG  LL+  ++ L  ++ + GDVA++LYDT+G P+
Sbjct: 363 EVTKDPQSIIDIVNEEETQFLKTLSRGRNLLNRTIAKLESNDTVPGDVAWRLYDTYGFPI 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL  ID+  + +     + +A+  S     G  ++I   +       +  
Sbjct: 423 DLTQLMTEEKGLK-IDMAGYEE----SKKQAQLISQNKVGGVDDQINLDVHSITELQE-R 476

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G             +                  V  + +    V++  SG++V ++ D+T
Sbjct: 477 GI-KPTDDSPKYNYKITSTTTYKEYEFAPCIGTVIELRRAKTFVDQVSSGEEVGILLDRT 535

Query: 519 PFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            FYAE GGQ+ D G    + D          +   G  +H   V  GIL+    +   +D
Sbjct: 536 NFYAEQGGQIYDEGFLVKVDDEATEIRIKNVQVRAGYVLHIGTVGEGILKKGDQVHANVD 595

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR +  NHSATH L+HAL  +LG+   Q GS + PD LRFD T+  P+T+ ++K+ E
Sbjct: 596 TTRRRLVMANHSATHALNHALRKVLGTEADQKGSLVAPDRLRFDFTNKGPMTTEQVKNAE 655

Query: 637 DNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLGTKYNDRVRVVSVE-----------YE 684
           +  ND+I  N  +  +  N        G  A+    Y D VRVVS+              
Sbjct: 656 NITNDMIKDNKKIYAKESNLALAKTIQGLRAMFEETYPDPVRVVSMGVPIEELEKNPLSP 715

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S   CGGTH+  TG I    I SE +I  GIRRI A+TG  A   L         
Sbjct: 716 VATQTSVEFCGGTHLHYTGHIGDFIIASEEAIAKGIRRIVALTGPEAAKALKKATLLQNQ 775

Query: 745 L--------ASFLKVSQGNVVGRVEEIWEE--------YRKLQ-----------LIHAKR 777
           L        A     +    V ++ E+ E+        +RK +           L    R
Sbjct: 776 LTQLQTTIEADKCGANSKEYVKKIVELTEDISHAVIPGWRKDEMRGMLKKLKKSLDDKDR 835

Query: 778 KLQLNVEDLSCHKIADV-------NFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVG 829
             +  + ++       +         +  ++    ++K L S +  ++        +L+ 
Sbjct: 836 AAKAAIANMVVETAQSIIQSKVGCQVLVEVLEAYSNTKALDSALKKIRAVSPETSALLIS 895

Query: 830 ISKE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + ++ KK   L  V +  +     A +  +  A ++  G GGG+   AQ+ G +    ++
Sbjct: 896 VDQDVKKIFALSSVPKSAVSKGLKANEWIQAIAPMM-QGKGGGKSESAQASGADITCLNE 954

Query: 888 AIAGVASFLKK 898
            ++    F  +
Sbjct: 955 IVSKANEFANQ 965


>gi|255311581|ref|ZP_05354151.1| alanyl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317882|ref|ZP_05359128.1| alanyl-tRNA synthetase [Chlamydia trachomatis 6276s]
          Length = 875

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/887 (36%), Positives = 482/887 (54%), Gaps = 45/887 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   
Sbjct: 1   MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D
Sbjct: 61  TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+GE
Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E 
Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RG
Sbjct: 239 ETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F
Sbjct: 299 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +        ID+ +F
Sbjct: 359 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +   E + R+R ++    +       F   +    ++FIGYD L    F          
Sbjct: 418 EKLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF---------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    + 
Sbjct: 466 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCES 512

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL 
Sbjct: 513 GTFLVSHTIAPKTGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D
Sbjct: 573 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 632

Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            ++S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++ 
Sbjct: 633 VMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L    A  
Sbjct: 687 TGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADL 746

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + QL  + +        KI D +++ + ++E + + ++   +A+ K+I +  I L    K
Sbjct: 747 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 806

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             +  VL  V++DL  R   A  L         GG  GG+   AQ  
Sbjct: 807 NGRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 852


>gi|166154091|ref|YP_001654209.1| alanyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166154966|ref|YP_001653221.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335296|ref|ZP_07223540.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|205830022|sp|B0B8X5|SYA_CHLT2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830023|sp|B0BAK4|SYA_CHLTB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|165930079|emb|CAP03562.1| alanyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165930954|emb|CAP06516.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 875

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/887 (36%), Positives = 483/887 (54%), Gaps = 45/887 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   
Sbjct: 1   MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D
Sbjct: 61  TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+GE
Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E 
Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RG
Sbjct: 239 KTVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F
Sbjct: 299 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +        ID+ +F
Sbjct: 359 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +   E + R+R ++    +       F   +    ++FIGYD L    F          
Sbjct: 418 EKLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF---------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++ I++  EI      G +  ++   TPFYAE GGQ+GD+G    + 
Sbjct: 466 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAEKGGQIGDSGEIFCES 512

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL 
Sbjct: 513 GTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D
Sbjct: 573 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 632

Query: 659 AIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            ++S       G KY D VRVV          S  LCGGTH  +TG+I    I  E ++ 
Sbjct: 633 VMSSSEIKQFCGDKYGDIVRVVLAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEA TG+ A +   GQD  L  +A+ ++  +  ++ ++  + EE + L    A  
Sbjct: 687 TGIRRIEATTGEDAENIARGQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADL 746

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + QL  + +        KI D +++ + ++E + + ++   +A+ K+I +  I L    K
Sbjct: 747 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 806

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             +  VL  V++DL  R   A  L         GG  GG+   AQ  
Sbjct: 807 NGRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 852


>gi|15605482|ref|NP_220268.1| alanyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789490|ref|YP_328576.1| alanyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|237805100|ref|YP_002889254.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|6707747|sp|O84754|SYA_CHLTR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123606616|sp|Q3KKU4|SYA_CHLTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|6578113|gb|AAC68344.2| Alanyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76168020|gb|AAX51028.1| alanyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|231273400|emb|CAX10315.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436296|gb|ADH18470.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296438155|gb|ADH20316.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140656|gb|ADH97414.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 875

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/887 (36%), Positives = 482/887 (54%), Gaps = 45/887 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   
Sbjct: 1   MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D
Sbjct: 61  TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+GE
Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E 
Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RG
Sbjct: 239 ETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F
Sbjct: 299 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +        ID+ +F
Sbjct: 359 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +   E + R+R ++    +       F   +    ++FIGYD L    F          
Sbjct: 418 EKLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF---------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    + 
Sbjct: 466 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCES 512

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL 
Sbjct: 513 GTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D
Sbjct: 573 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 632

Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            ++S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++ 
Sbjct: 633 VMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L    A  
Sbjct: 687 TGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADL 746

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + QL  + +        KI D +++ + ++E + + ++   +A+ K+I +  I L    K
Sbjct: 747 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 806

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             +  VL  V++DL  R   A  L         GG  GG+   AQ  
Sbjct: 807 NGRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 852


>gi|125987341|ref|XP_001357433.1| GA12250 [Drosophila pseudoobscura pseudoobscura]
 gi|54645764|gb|EAL34502.1| GA12250 [Drosophila pseudoobscura pseudoobscura]
          Length = 966

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/973 (30%), Positives = 449/973 (46%), Gaps = 87/973 (8%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           M       +R  +L FF++  H  + SSS IP +DPTL+F N+GM  +K IF G   P  
Sbjct: 1   MKFLTAKEVRDAYLGFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQYKPIFLGTADPNS 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 61  EMSKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEF 120

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT    L + RLY+T +  DE        E  +LW  + GL  + I+  +  DNFW M E
Sbjct: 121 LTNRLHLPKDRLYVTYFGGDEASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGE 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID
Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIV 276
            GMG ER+ +V+Q K +NYD DLF  L +A +            G        + +RV+ 
Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGADDVDGIDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGTLVNTVVDLLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PE+ +    I + +  E+ +F KTL RG  LL+  +  LG   I+ GDVA++LYDT+G
Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQSIIPGDVAWRLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ Q +   +      +       E  +  +   S G G+   E+I   +       
Sbjct: 419 FPVDLTQLMAEEKS-----LEIDMAGYEAAKQNSYVLSQGKGASKIEEINLDVHAISQLQ 473

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +  G        F  +   V  ++         +S + A+  + + V E  +GQK  +V 
Sbjct: 474 E-QG-VPPTNDSFKYKYEAVSEERDSAYNYQECTSKIVALRFENQFVNEISNGQKAGIVL 531

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE+GGQ+ D G  +            +    G ++ H  V  G L+    L L 
Sbjct: 532 DKTNFYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELQLH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDEERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKAAMTIEQVAK 651

Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682
            E    D++ +N+P+  +           G  ++    Y D VRV+S             
Sbjct: 652 TEQLTKDMVYKNVPIYAKESKLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   +   +   
Sbjct: 712 AEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFE 771

Query: 743 KSLASFLKVSQG-------------NVVGRVEEI---------WEEYRKLQLIHAKRKLQ 780
           + +   LK +                +V   E+I          +E R L     K    
Sbjct: 772 QEIVK-LKATIDADKSGKDSKSHVKEIVELTEQISHATVPYVKKDEMRNLLKGLKKTLDD 830

Query: 781 LNVEDLSCHKIA-------------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826
                 +   +                N +   +   ++ K L + +  ++ ++     M
Sbjct: 831 KERSLRAAVSVNVVERAKELCEANPGANVLVQQLEAFNNTKALDAALKQVRTQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
              +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N ++
Sbjct: 891 FFSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSPTL-GGKGGGKPESAQASGSNYDR 949

Query: 885 ADQAIAGVASFLK 897
            ++ I     F +
Sbjct: 950 VEEIIQLATKFAQ 962


>gi|282932649|ref|ZP_06338063.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|281303223|gb|EFA95411.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 878

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/920 (34%), Positives = 499/920 (54%), Gaps = 64/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S  R  +L+FF+++GH +LPS SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K
Sbjct: 61  RRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD+ +L+ TVY +D ++ K+W+K +G+  D II++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLDKDKLFCTVYPKDVDSQKVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      E    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I  +E+++   KY     + +  ++I DH+R+ SF I D
Sbjct: 233 RVLSILQDAPTNFETDLFLPMIHETEKMSAGKKYGANKEDDIAFKIIADHVRAVSFAIGD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE+++    I+
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKIMESHYPEVLKQASFIQ 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RFG TL+ GL LLD ++       D+ ++G  AFKL+DT+G P ++  +   
Sbjct: 353 KVIKNEEDRFGATLESGLSLLDDLIEKASASDDKTISGKDAFKLFDTYGFPYELTFEAAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +GL  +D   F++ ++ Q+ RAR     L S   +    +L      ++F         
Sbjct: 413 DKGLK-VDKAGFDKEMDAQKERARKARGDLQSMGRQD--ETLMNIKDKSEF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                            +     + +  IV   ++V++A  G+   ++FD+TPFYAE GG
Sbjct: 461 --------------EYGVYEEKHAKLIDIVVDDKLVDKA-DGETATLIFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL ID   R  L  
Sbjct: 506 QVADHGDIYDQNGDLVAKVTDVQHAPNDQNLHFVDLVLPMEKGKEYVLKIDAHRREGLCH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHL+H AL  +LG H  Q GS + PD LRFD T   P+T  E++++E  VN  I +
Sbjct: 566 SHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V T I + E     GA AL   KY D+VRVV +        S   CGGTH S+T +I
Sbjct: 626 NIDVKTTITDPETGKKMGALALFNGKYGDKVRVVQI-----NDFSIEFCGGTHCSNTAQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SE +I AG+RRIEA+T ++A  +L  +D  L+ +   +K     ++  ++  + 
Sbjct: 681 GIFKIISEQAIGAGMRRIEAVTSEKAYEYLTNRDALLEEIKQEVKATKVEDIKTKITSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE    Q   A+ + ++N    S       ++  +  ++ +       +L+ + D  +  
Sbjct: 741 EELHASQKKAAELESEINAAKASDIFENVQEVNGLKVIAAMADVNGMNDLRELADNWKAS 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L   + + KA+++I + +  LD+   A +L +++A V GGGG GGRP+MAQ+G
Sbjct: 801 NKSDVLVLA-CANDGKANMVISLADAALDKGLKAGNLIKVAAPVFGGGG-GGRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N     +AI  V + + K
Sbjct: 859 GKNPAGLKEAITAVINEINK 878


>gi|10803041|gb|AAG23689.1|AF297520_1 alanyl-tRNA synthase [Haemophilus ducreyi]
          Length = 783

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/820 (39%), Positives = 474/820 (57%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           M+GNFSFG YFK  AIQ AW+ LT  K   L + +LY+TVY+ D+EA+ +W K  G+ ++
Sbjct: 1   MMGNFSFGDYFKHDAIQFAWEFLTSEKWLHLPKEKLYVTVYETDDEAYDIWHKTVGVPSE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
            IIRI  N       DNFW+M +TGPCGPC+EIF+D GE   GGLPG++E +G+RYIE+W
Sbjct: 61  HIIRIGDNKGVPYASDNFWAMGDTGPCGPCTEIFYDHGESFWGGLPGTAEEDGDRYIEVW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLERM  V+Q   +NY+ D+F+ LI+    +  
Sbjct: 121 NIVFMQFNRQADGTLAKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIKEVATLLH 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
           +     +  + RVI DH+R+ S+LI DG++P+NEGRGYVLRRI+RRA+ +  LLG  E  
Sbjct: 181 VAD--LDNKSLRVIADHIRACSYLIVDGVIPSNEGRGYVLRRIIRRAVRHGNLLGAKEAF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+P L   MG A   L   +  I++TL++E+E+F +TL+RGL LL+  L+ +  ++ 
Sbjct: 239 FYKLVPTLAKVMGQAGEILTDKQSYIQKTLKTEEEQFARTLERGLALLEEALTKVE-NQT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+VAFKLYDT+G PLD+  D+   R    ID  SF   +  QR RA++ S        
Sbjct: 298 LSGEVAFKLYDTYGFPLDLTADVCRERD-IVIDEASFEIEMTAQRERAKSSSNFG----- 351

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + S+ +    T FIGYD                            + V A+   G+ 
Sbjct: 352 -ADYNSVIKVEAETAFIGYDCF-----------------------NAEAKVIALFSNGQA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V++  SG+   VV D+TPFYAE GGQ+GD+G       +  + D QK    +F H   V 
Sbjct: 388 VDKVQSGESAVVVLDKTPFYAEMGGQVGDSGLITTAFCQFAVADTQKYG-QVFGHIGQVV 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L     +   +D   R+ ++ NHSATHLLH AL  +LG HV Q GS ++ + LRFD 
Sbjct: 447 SGSLAIGDIISAQVDIARRQAITANHSATHLLHSALRQVLGEHVVQKGSLVSENVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           + S+ ++ A+L+ IE  VN  I QNL V    M+ E A   G  AL G KY D VRVV +
Sbjct: 507 SQSQAVSKAQLEEIERIVNRQIRQNLAVTIETMDIETAKEKGTVALFGEKYGDVVRVVGM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                   S  LCGGTHV  TGEI L  ++SES++ AGIRR+EA+T + A + L  Q + 
Sbjct: 567 T-----DFSIELCGGTHVKHTGEIGLFKLISESAVAAGIRRVEALTAENAINWLHNQQKI 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNF 796
           +   A  LK    ++V ++ ++ ++ ++ +      K +L  +          +I  +N 
Sbjct: 622 IHQSAELLKTDSLSLVDKIYQLQDKIKRNEKELQHFKDKLAAQAGAELAKQVVQINGINV 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +  ++SK L++++D L+ ++ S I++   +S + K ++++ VT+DL ++ NA +L 
Sbjct: 682 VIQKLEGIESKSLRTMVDDLKNQLSSVIVVFGSVSAD-KVNLIVGVTKDLSNKVNAGELV 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            L A+ + GG GGGRP MA +GG      D A+A    ++
Sbjct: 741 GLIAQQV-GGKGGGRPDMAMAGGTEPQHLDTALAFAKQWI 779


>gi|308805977|ref|XP_003080300.1| COG0013: Alanyl-tRNA synthetase (ISS) [Ostreococcus tauri]
 gi|122158402|sp|Q015G2|SYAP_OSTTA RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|116058760|emb|CAL54467.1| COG0013: Alanyl-tRNA synthetase (ISS) [Ostreococcus tauri]
          Length = 945

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/918 (33%), Positives = 451/918 (49%), Gaps = 73/918 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FLEF++  GH   PS+SL+P  DPT++ T +GM+ FK +F GQ +      TT QK
Sbjct: 67  IRRRFLEFYEARGHSRQPSASLVPE-DPTVLLTIAGMLQFKPVFMGQREREMPRATTTQK 125

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR     ND++NVG T RHHTFFEMLGNFSFG YFK  A + AW+L T EF L+  R++
Sbjct: 126 CVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREACEWAWELATNEFGLNPERVW 181

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V+ ED+EAF +W+ + G+   +I R+   DNFW+   TGPCGPCSE+++D        
Sbjct: 182 VSVFREDDEAFAIWRDVVGVPESRIKRMDEKDNFWAAGPTGPCGPCSELYYDFHPERGLD 241

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                ++  R+IE +NLVFM+  +        L   +IDTGMGLERMA +LQ  +NNY+ 
Sbjct: 242 GADLDDDS-RFIEFYNLVFMELNRDADGGIKPLKNKNIDTGMGLERMAQILQGVSNNYET 300

Query: 247 DLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           DL + +I  +  + G+ Y           +VI DH R+ +++I+DG+  +N GRGY++RR
Sbjct: 301 DLIRPIIDKAASMAGLDYASCSATQKQQLKVIGDHTRAVTYMISDGVFASNIGRGYIVRR 360

Query: 304 IMRRAMCYARLLGY-----TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           ++RR +   RLLG             +     +      P++++    I   L  E+  F
Sbjct: 361 LLRRVVRNGRLLGIKPADGQSAFTPSIAEVAISMSEECDPQVVKNTARILAELEREELSF 420

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            KTL RG  +L  ++      +  L+G  AF LYDT+G PLDI  D+    G   +D+  
Sbjct: 421 QKTLGRGEEMLAELIEKAKDSKSGLSGKDAFTLYDTYGFPLDITTDVASEAG-IAVDLEG 479

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A+ EQRS ++A    +       +     E    ++FIGYD +              
Sbjct: 480 FEKAMAEQRSMSQAAHQTVDVTAGNALAQVADELGAMSEFIGYDNISSDV---------- 529

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V AIV  GE VEEA  G +V+VV D TPFYAE+GGQ+GD G     
Sbjct: 530 ------------SNVLAIVSGGESVEEASGGARVDVVLDVTPFYAESGGQVGDNGFLHSA 577

Query: 538 GIRLQITDVQKK--AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
              +      +K     I VH A V +G ++    +   +D   RR+   NH+ATHLL  
Sbjct: 578 DGAVLKVTDVQKAGGGRIIVHSATVVKGSIKKGSQVSANVDENARRRARNNHTATHLLQS 637

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG  VSQ GS    D LRFD    K +T A+L  +E  VN  I+Q+  +    M 
Sbjct: 638 ALKKVLGDDVSQAGSLCGFDRLRFDFNCPKAVTEAQLLEVETLVNGWISQSADLTAEEMP 697

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A   GA  + G KY D VRVV V        S  LCGGTHVS+T EI    I+SE+ 
Sbjct: 698 IAAAKEKGATMMFGEKYGDVVRVVDVPG-----ISMELCGGTHVSNTAEIGGFKIISEAG 752

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +GIRRIEA+ G      L  +D  +K LAS L+V    +  RV  + ++    Q +  
Sbjct: 753 IASGIRRIEAVAGAGVVELLQQRDAVVKQLASTLRVPPEEIASRVSGMQKDLVAAQKLAE 812

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L V            + +   +   +  VD   LK   + L  ++  G  +++G 
Sbjct: 813 SLRGELAVAKANALVSEARAVGESKVLVARLDGVDPGALKVAAENLATQLGDGAAVILGS 872

Query: 831 SKEKKASVLIVVTEDLLD--RFNAVDLA----------RLSAKVLGGGGGGGRPHMAQSG 878
           +      ++ +    +       A  +                              Q+G
Sbjct: 873 ANGDNVGLVALFDTKVQKDGDLKAGQVLGAAAKRCGGGGGGKPGFA-----------QAG 921

Query: 879 GPNGNKADQAIAGVASFL 896
           G +  + D A+      L
Sbjct: 922 GRDATQLDAALDEALQTL 939


>gi|296437225|gb|ADH19395.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/11222]
          Length = 874

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/886 (36%), Positives = 482/886 (54%), Gaps = 44/886 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   
Sbjct: 1   MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D
Sbjct: 61  TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+GE
Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E 
Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
              ++ D+ +HLI   E ++G  Y         RVI DH+RS SF IADG+LP N  RGY
Sbjct: 239 ETVFEADVLRHLISKIENLSGTTYSTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F 
Sbjct: 299 VLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFF 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +        ID+ +F 
Sbjct: 359 KTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTFE 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +   E + R+R ++    +       F   +    ++FIGYD L    F           
Sbjct: 418 KLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF----------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    +  
Sbjct: 465 ------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCESG 512

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL  
Sbjct: 513 TFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEM 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D 
Sbjct: 573 TLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDV 632

Query: 660 IASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           ++S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++  
Sbjct: 633 MSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVAT 686

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L    A  +
Sbjct: 687 GIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLE 746

Query: 779 LQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            QL  + +        KI D +++ + ++E + + ++   +A+ K+I +  I L    K 
Sbjct: 747 NQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEKN 806

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +  VL  V++DL  R   A  L         GG  GG+   AQ  
Sbjct: 807 GRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 851


>gi|256852223|ref|ZP_05557609.1| alanyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260661745|ref|ZP_05862656.1| alanyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|297205611|ref|ZP_06923007.1| alanine--tRNA ligase [Lactobacillus jensenii JV-V16]
 gi|256615269|gb|EEU20460.1| alanyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260547492|gb|EEX23471.1| alanyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|297150189|gb|EFH30486.1| alanine--tRNA ligase [Lactobacillus jensenii JV-V16]
          Length = 878

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/920 (34%), Positives = 499/920 (54%), Gaps = 64/920 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S  R  +L+FF+++GH +LPS SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTSSEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + +T+ QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K
Sbjct: 61  RRITSSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD+ +L+ TVY +D ++ K+W+K +G+  D II++   DNFW + E GPCGP +EIF
Sbjct: 117 WLGLDKDKLFCTVYPKDVDSQKVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+                E  RY+EIWN+VF Q+      E    P  +IDTGMGLE
Sbjct: 173 YDRGQENNDVAEDDPENFPGGENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++LQ+   N++ DLF  +I  +E+++   KY     + +  ++I DH+R+ SF I D
Sbjct: 233 RVLSILQDAPTNFETDLFLPMIHETEKMSAGKKYGANKEDDIAFKIIADHVRAVSFAIGD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE+++    I+
Sbjct: 293 GALPSNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKIMESHYPEVLKQASFIQ 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RFG TL+ GL LLD ++       D+ ++G  AFKL+DT+G P ++  +   
Sbjct: 353 KVIKNEEDRFGATLESGLSLLDDLIEKASASDDKTISGKDAFKLFDTYGFPYELTFEAAQ 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +GL  +D   F++ ++ Q+ RAR     L S   +    +L      ++F         
Sbjct: 413 DKGLK-VDKAGFDKEMDAQKERARKARGDLQSMGRQD--ETLMNIKDKSEF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                            +     + +  IV   ++V++A  G+   ++FD+TPFYAE GG
Sbjct: 461 --------------EYGVYEEKHAKLIDIVVDDKLVDKA-DGETATLIFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G         +      + A      H +     +      VL ID   R  L  
Sbjct: 506 QVADHGDIYDQNGDLVAKVTDVQHAPNDQNLHFVDLVLPMEKGKEYVLKIDAHRREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHL+H AL  +LG H  Q GS + PD LRFD T   P+T  E++++E  VN  I +
Sbjct: 566 SHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V T I + E     GA AL   KY D+VRVV +        S   CGGTH S+T +I
Sbjct: 626 NIDVKTTITDPETGKKMGALALFNGKYGDKVRVVQI-----NDFSIEFCGGTHCSNTAQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SE +I AG+RRIEA+T ++A  +L  +D  L+ +   +K     ++  ++  + 
Sbjct: 681 GIFKIISEQAIGAGMRRIEAVTSEKAYEYLTNRDALLEEIKQEVKATKVEDIKTKITSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE    Q   A+ + ++N    S       ++  +  ++ +       +L+ + D  +  
Sbjct: 741 EELHASQKKAAELESEINAAKASDIFENVQEVNGLKVIAAMADVNGMNDLRELADNWKAS 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L   + + KA+++I + +  LD+   A +L +++A V GGGG GGRP+MAQ+G
Sbjct: 801 NKSDVLVLA-CANDGKANMVISLADAALDKGLKAGNLIKVAAPVFGGGG-GGRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N     +AI  V + + K
Sbjct: 859 GKNPAGLKEAITAVINEINK 878


>gi|256371739|ref|YP_003109563.1| alanyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008323|gb|ACU53890.1| alanyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 854

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/886 (37%), Positives = 473/886 (53%), Gaps = 64/886 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  F E+F + GH  +PS+SL+P  DPTL+FT +GMVPFK  F G+E P Y+  
Sbjct: 1   MDSNDLRRAFREYFVERGHVPVPSASLVPH-DPTLLFTVAGMVPFKPYFLGEEVPPYRRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T++QKC+RAGGKHNDLD VG T RH TFFEMLGNFSFG YFKE AI  AW L+T+   LD
Sbjct: 60  TSIQKCMRAGGKHNDLDQVGTTARHLTFFEMLGNFSFGDYFKEGAIPYAWGLVTEVLGLD 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ITV+  D+EA ++W +  G+  ++I R+   DN+W M ETGPCGPCSEI++D+GE
Sbjct: 120 PDRLWITVHTSDDEAERIWIEACGVRPERIQRL-DEDNWWQMGETGPCGPCSEIYYDKGE 178

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G   +    ER++EIWNLVFMQ+++        LP   IDTG GLER+  VLQ   
Sbjct: 179 SYGAGGGPAVGSDERFLEIWNLVFMQYDRHPDGSLTPLPAPCIDTGAGLERIVPVLQGHD 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN------IVNHRVIVDHLRSSSFLIADGILPANE 295
           + ++ DL   L++ ++ +TG +Y G         V  R++ DH R+++FL+ADG++P NE
Sbjct: 239 SVFETDLMWPLMEEAQSLTGRRYGGRFGADAGGDVGLRIMADHARATTFLLADGVVPTNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RR +  A+LLG   P++  ++      MG AYPE+ +    I +    E+
Sbjct: 299 GRGYVLRRIIRRLVARAQLLGAKGPVVEPMVRMTAAVMGEAYPEVARELETIVQHAAREE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  TL  G  LLD  L        + G +AFKL+DT+GLP+++  ++   RG   +D 
Sbjct: 359 ERFAATLALGRPLLDAALE----GGSVPGALAFKLHDTYGLPIELTMELAAERG-VSVDR 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A+  QR RAR   LG        +   +  ++G ++F GY+              
Sbjct: 414 AGFEEAMAAQRERARQAGLG-TEAVEHPVSAEVLREHGRSEFTGYEATE----------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                 +G ++  A  G  +  V D+TPFY E GGQLGDTG   
Sbjct: 462 ---------------------DEGRLLALASEGDVLVAVLDRTPFYPEGGGQLGDTGTIE 500

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           GDG RL I D  +   G+  HH     G       +   +D + R  L ++H+ATHLLH 
Sbjct: 501 GDGFRLTIIDTDQPVAGVIRHHVGAVEGEPVIGALVRAVVDAERREGLRVHHTATHLLHW 560

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD LRFD TH  P+T  E++ IE  V   I ++  V   +M+
Sbjct: 561 ALREVLGPHVKQQGSLVAPDHLRFDFTHWGPLTPDEIEEIERRVAAEIIRDSVVTVELMD 620

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           R++AI  GA A  G +Y D VRVV       G  S  LCGGTH+   G I  L I SESS
Sbjct: 621 RDEAIRRGAVAFFGDRYGDVVRVV-----HAGESSVELCGGTHLDRLGRIGHLRITSESS 675

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I A  RR+EA+    A          L  L   +   +  +  RV+ I E  ++ +   A
Sbjct: 676 IGANTRRVEAVVQLAALEVAHRDRRLLDELERIVPGGRDGIGERVDRIVERAKRAESELA 735

Query: 776 KRKLQLNVE--DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           + + +   E              +   +  +D + ++ +   ++   +  + +++G    
Sbjct: 736 RERTRTLAERARALAETRGADGLVVARVDGLDQRGVRELAMLVRD-HEGVLGVVIGGVAN 794

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--------GGR 871
              ++   V E    R  A +L R  A+ +GGG G        GGR
Sbjct: 795 GVVALAAAVREGAPWR--ADELLRPVAQAVGGGVGRAEVVAVSGGR 838


>gi|189217804|ref|NP_001121342.1| alanyl-tRNA synthetase [Xenopus laevis]
 gi|171846704|gb|AAI61712.1| LOC100158432 protein [Xenopus laevis]
          Length = 968

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/972 (33%), Positives = 484/972 (49%), Gaps = 96/972 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
              S IR  F++FF+ NGH  + SS+ +P +DPTL+F N+GM  FK IF     P +   
Sbjct: 5   MTASEIRQKFIDFFKDNGHTYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMA 64

Query: 60  ---AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
                   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA DLLTK
Sbjct: 65  KLTRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTK 124

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           EF +D  RLY+T +        + D E  ++W  + GL+  +I+  +  DNFW M +TGP
Sbjct: 125 EFGIDIERLYVTYFGGNEAAGLEPDLECKQIWLNL-GLAESRILPGSMKDNFWEMGDTGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI FD+           + +    +EIWNLVF+QF ++       LPK SIDTGM
Sbjct: 184 CGPCSEIHFDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRETDGTLKPLPKKSIDTGM 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH 
Sbjct: 243 GLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGDEDVDGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L  ++     L+  +   +G+A+P
Sbjct: 303 RTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASKGFFSTLVDVVVQSLGNAFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL +   ++++ +  E+ +F KTL+RG  +LD  +  LG+ +++ GD A+ LYDT+G P+
Sbjct: 363 ELKKDPDMVKDIINDEETQFLKTLNRGRRILDRKIQSLGEHKVIPGDTAWLLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   I   RGL  +D+ SF +    +R  A+  S G G+G  + +   +          
Sbjct: 423 DLTSLIAEERGLT-LDMESFEE----ERKAAQLKSQGKGAGDEDLLMLDIYAI------- 470

Query: 459 GYDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
             + LR       D             +   + + + VKAI ++   VEEA +GQ+  +V
Sbjct: 471 --EELRSRGLEPTDDLPKYTYTSNAEGVYEFDNLLATVKAIRREKMFVEEASTGQECGLV 528

Query: 515 FDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            D+T FYAE GGQ  D G  +        + + T    +  G +V H     G L+    
Sbjct: 529 LDKTCFYAEQGGQTYDEGYMVKEEESSEDKTEFTVRNTQVRGGYVLHVGTLYGNLKVGDQ 588

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +T+ 
Sbjct: 589 VHLYIDEPKRRPIMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMTTQ 647

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVE------- 682
           E++  E+  NDII +N  V         A    G  A+    Y D VRVVS+        
Sbjct: 648 EIRKTEEIANDIIKENKVVYALDCPLATAKAIQGLRAVFDETYPDPVRVVSIGIPVEDLL 707

Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                  G V S   CGGTH+ ++G      IV+E +I  GIRRI A+TG  A+  L  Q
Sbjct: 708 ADPSSPAGSVTSVEFCGGTHLKNSGHAGPFIIVTEEAIAKGIRRIVAVTGAEAQKALRRQ 767

Query: 739 DEKLKSLASFLKV------SQGNVVGRVEEI-----------------WEEYRKLQL--- 772
           D    SL+   K          +V   + ++                  E+ + L+    
Sbjct: 768 DAIKVSLSDLEKKVKKQTDPNKDVQKEIADLSENLATVVIAQWQKDVLREQLKTLKKTMD 827

Query: 773 ---IHAKRKLQLNVEDLSCHKIADVN----FMSHIISEVDSKELKSVMDALQKKIQSGII 825
                +K  +Q  V +++   I +       +  + +   +K L   +  L+ +      
Sbjct: 828 DLDRASKADVQKRVLEITKQLIEEHPNQPLLVLEMENGASAKALNESLKLLKSQSPQTAA 887

Query: 826 MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           M+  +  +  K + L  V ++  D+   A +  +  ++ L  G GGG+   AQ+ G N  
Sbjct: 888 MIFSVDSDAGKITCLCQVPKETADKGLKANEWVQQVSE-LMDGKGGGKDTSAQATGKNVG 946

Query: 884 KADQAIAGVASF 895
              Q +     F
Sbjct: 947 CLSQVLKLAEDF 958


>gi|237803179|ref|YP_002888373.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274413|emb|CAX11208.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
          Length = 875

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/887 (36%), Positives = 482/887 (54%), Gaps = 45/887 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   
Sbjct: 1   MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D
Sbjct: 61  TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              +Y TV+++D+EAF LW+K   L  ++I R+T  DNFWSMA+TGPCG CSE+ FD+GE
Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTNRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E 
Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RG
Sbjct: 239 ETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F
Sbjct: 299 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +        ID+ +F
Sbjct: 359 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +   E + R+R ++    +       F   +    ++FIGYD L    F          
Sbjct: 418 EKLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF---------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    + 
Sbjct: 466 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCES 512

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL 
Sbjct: 513 GTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D
Sbjct: 573 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 632

Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            ++S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++ 
Sbjct: 633 VMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L    A  
Sbjct: 687 TGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADL 746

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + QL  + +        KI D +++ + ++E + + ++   +A+ K+I +  I L    K
Sbjct: 747 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 806

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             +  VL  V++DL  R   A  L         GG  GG+   AQ  
Sbjct: 807 NGRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 852


>gi|255349144|ref|ZP_05381151.1| alanyl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503681|ref|ZP_05382071.1| alanyl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|255507361|ref|ZP_05383000.1| alanyl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|289525793|emb|CBJ15274.1| alanyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296435369|gb|ADH17547.1| alanyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296439086|gb|ADH21239.1| alanyl-tRNA synthetase [Chlamydia trachomatis E/11023]
          Length = 875

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/887 (36%), Positives = 483/887 (54%), Gaps = 45/887 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   
Sbjct: 1   MLSNTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D
Sbjct: 61  TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+GE
Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E 
Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAET 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RG
Sbjct: 239 ETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F
Sbjct: 299 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +        ID+ +F
Sbjct: 359 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNY-AIDMDTF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +   E + R+R ++    +       F   +    ++FIGYD L    F          
Sbjct: 418 EKLEVEAKERSRKNTKK--TKNDSDSVFQDLDPTNTSEFIGYDTLSCDTF---------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++ I++  EI      G +  ++   TPFYAE GGQ+GD+G    + 
Sbjct: 466 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAEKGGQIGDSGEIFCES 512

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL 
Sbjct: 513 GTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D
Sbjct: 573 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 632

Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            ++S       G KY D VRVV          S  LCGGTH  +TG+I    I  E ++ 
Sbjct: 633 VMSSSEIKQFFGDKYGDIVRVVLAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEA TG+ A +   GQD  L  +A+ ++  +  ++ ++  + EE + L    A  
Sbjct: 687 TGIRRIEATTGEDAENIARGQDMDLNEIATVIQSPKDQILIKIRSVMEEKKDLAKQVADL 746

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + QL  + +        KI D +++ + ++E + + ++   +A+ K+I +  I L    K
Sbjct: 747 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 806

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             +  VL  V++DL  R   A  L         GG  GG+   AQ  
Sbjct: 807 NGRYIVLSRVSDDLTKRGVQAHTLLAELLAP-YGGRCGGKAISAQGS 852


>gi|291301348|ref|YP_003512626.1| alanyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290570568|gb|ADD43533.1| alanyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 885

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/921 (33%), Positives = 476/921 (51%), Gaps = 65/921 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  FL  F+ NGH ++PS+ L    DP L+F N+GMV F   FTGQ+ P +   
Sbjct: 1   MRTAEIKRRFLAHFEANGHTVVPSAPLPAIEDPNLLFINAGMVQFVPYFTGQQTPPWTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VG T RH TFF+M GNFSFG YFKE+AI+LAWDL+T+     
Sbjct: 61  TSVQKCIRT----PDIEEVGITTRHGTFFQMNGNFSFGDYFKEKAIELAWDLMTRPQSQG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ +LY +VY +D+EA  LWK+I+GL  ++I R+  ++NFWSM   GPCGPCSEI 
Sbjct: 117 GLGFDESKLYPSVYVDDDEAIGLWKRIAGLPDERIPRLGKSENFWSMGIPGPCGPCSEIL 176

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQF------EQQNKQERFILPKMSIDTGMGL 230
            D G          + +  RY+E+WNLVFMQ        +++ +    LP  +IDTGMGL
Sbjct: 177 LDLGPEFGEEGDFLNGD--RYMELWNLVFMQNLRGEGTNKEDFEILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N ++ID  + LI  + ++TG +Y     + V  RVI DH+R+   LI D
Sbjct: 235 ERVAYMLQGVNNMFEIDEVRPLIDRASELTGKRYGASRPDDVRFRVIADHVRTGLMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRRI+RRA+   RLLG+ +  +  LLP     M  +YPEL +    I 
Sbjct: 295 GVTPSNEGRGYVLRRILRRAIRAIRLLGFEDKALPELLPVARDCMSPSYPELSEDFERIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+E F  TL +G  +LD  +         +L G  AF+L+DT+G P+D+  ++  
Sbjct: 355 SYAYGEEEAFRSTLRQGTTILDTAVKDTKASGGTLLPGAKAFELHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL  +D   F Q + EQR RA+A +    +   +   +  L    G T +  Y+ L  
Sbjct: 415 EQGLK-VDEEGFRQLMAEQRRRAKADAQSRKTAHADMSAYRELLTAGGPTDWKAYETL-- 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  ++ +G  ++ A  GQ VEVV D+TPFYAE+G
Sbjct: 472 ---------------------NTESTVLGMLAEGSPIQVAKEGQLVEVVLDKTPFYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G   G  +  ++ DVQ+  +G+ VH   V +G L    ++   +D + R     
Sbjct: 511 GQHADAGTITGASVSAEVVDVQRPIKGLVVHQVRVLKGELAVGTAVKADVDPEWRLGARQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG    Q+GS   P  LR D +    ++      +E+  N  + +
Sbjct: 571 AHSGTHVVHAALREVLGPAALQSGSFNRPGYLRLDFSWRSKLSDESRSEVEEAANRAVRK 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +LPV  + M   +A   GA AL G  Y++ VRVV +    GG  S  LCGGTHV    +I
Sbjct: 631 DLPVAVKYMTLPEAREFGALALFGETYDETVRVVEI----GGEWSRELCGGTHVQHAAQI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I SE+S+ +G RR+EA+TG  A  +L  + + +  +A  L   +  +  R+  + +
Sbjct: 687 GPVVITSEASVGSGQRRVEAVTGLEAFHYLARERDLVSQIADELGAPRAELPERISALMQ 746

Query: 766 EYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQKK 819
             +  +   A  + +              KI DV   +          + + +   ++  
Sbjct: 747 RAKDAEKELANLRAKELRDSAATFAAQAKKIGDVAVAAVQAPDGTGGGDARKLATEIRGH 806

Query: 820 I---QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +   + GI  +   +   KAS++++V +       +A  L + +      G GGG   +A
Sbjct: 807 LDPNKPGIAAVAATA-GGKASLVVIVNKTGTAQGLSAQALVKGALS----GRGGGNDEVA 861

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG   ++A   +  V++ +
Sbjct: 862 QGGGVPADQASALLQAVSAQV 882


>gi|308485186|ref|XP_003104792.1| CRE-AARS-2 protein [Caenorhabditis remanei]
 gi|308257490|gb|EFP01443.1| CRE-AARS-2 protein [Caenorhabditis remanei]
          Length = 966

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/976 (29%), Positives = 457/976 (46%), Gaps = 97/976 (9%)

Query: 1   MS--NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M     S +R+TF+ FF +K  H  + SSS+IP +DPTL+F N+GM  FK +F G   P 
Sbjct: 1   MKHLTASEVRSTFINFFKEKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPN 60

Query: 58  Y-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWD 112
                 +     QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG YFK+  I  AW+
Sbjct: 61  SDLAKLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWE 120

Query: 113 LLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           LLT  + +   RLY++V+  DE        EA ++W+   G+  ++I+     DNFW M 
Sbjct: 121 LLTTVYGIPSERLYVSVFGGDEATGVPADSEAREIWRS-VGVPDERILNFGMKDNFWEMG 179

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           + GPCGPCSEI +D+           + +    +EIWNLVF+QF ++       LP   I
Sbjct: 180 DVGPCGPCSEIHYDRIGNRD-ASHLVNADDPMVVEIWNLVFIQFNREEGGSLKTLPAKHI 238

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+  V+Q+KT+NYD D+F+ + QA  + +G++    +          + +RV+
Sbjct: 239 DCGLGLERLIAVMQDKTSNYDTDIFQPIFQAINKGSGVRAYTGHIGDDDKDGIDMAYRVV 298

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+P + + +G
Sbjct: 299 ADHIRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYATEKLNAQPGFFASLVPVVISILG 358

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDT 393
             +PEL +    + + +  E+++F KTL RG VL    +  L    +   GDVA++LYDT
Sbjct: 359 ETFPELSRDPETVMDIINDEEKQFLKTLSRGRVLFQRAVDSLPAGTKTFPGDVAWRLYDT 418

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEK 451
           +G P D+ Q +   +GL+ +D+ +F +A ++    + A +          +     L++K
Sbjct: 419 YGFPADLTQLMAEEKGLS-VDLTAFEEARKKAIETSSAGTGKFRDTLDLDVHALADLQQK 477

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
              T                          +         + AI + G+ V+E V+G++ 
Sbjct: 478 GVPT--------TDDTPKYAYSFTGEGADAVYKFEPCVGKILAIRRDGKFVDELVAGEEG 529

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMS 570
            ++ D+T FYAE GGQ+ D G            +    +  G ++       G  +    
Sbjct: 530 AILLDRTNFYAEQGGQIYDVGVLTKVNDESNEFNVSNCQVRGGYIVLVGSSEGNFKIGDD 589

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D   ++ +  NH+ TH+L++AL  +L     Q GS + PD +RFD T+   +TS 
Sbjct: 590 VNQRFDEDRKQLIMKNHTGTHVLNYALRKVLA-DSDQKGSLVAPDRMRFDFTNKAAMTSE 648

Query: 631 ELKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEY------ 683
           ++K  E+    +I     V  +     +    +G  A+    Y D VRVV+V        
Sbjct: 649 QVKQAEEYAQQLINTKGQVYAKNSPLADAKKINGLRAMFDETYPDPVRVVAVGTSVEQLL 708

Query: 684 -----EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                 +G   +   CGGTH+ +   I  + I SE +I  GIRRI A+TG  A   +   
Sbjct: 709 QNPDAPEGQNTTVEFCGGTHLQNVSHIGRIVISSEEAIAKGIRRIVALTGPEADRAIARA 768

Query: 739 DEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQ---------------LIHAKRKLQ-- 780
           D     L    K      ++   ++  E  +K+Q                   ++K +  
Sbjct: 769 DRLEARLVEESKHAKNQELLANKDKFKELQKKIQEIVDEANGALLPSWRKDSLRKKAKDV 828

Query: 781 --------LNVEDLSCHKI-ADVN----------FMSHII-SEVDSKELKSVMDALQKKI 820
                      +     K+  +             + H+  S  +SK + + +  L+   
Sbjct: 829 QKDMDGYSKAQQAAVAEKVLGEAKELAAASEQPAVLVHVFTSNANSKAIDNALKLLKDT- 887

Query: 821 QSGIIMLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
               +M   ++++  K   L  V + L+    A +       VL GG GGG+   AQ  G
Sbjct: 888 --KAVMAFSVNEDTGKVLCLAKVDKSLVSSLKANEWVNEVCTVL-GGKGGGKDANAQLTG 944

Query: 880 PNGNKADQAIAGVASF 895
            N +K D A+     F
Sbjct: 945 ENVDKLDAAVELAQKF 960


>gi|284044488|ref|YP_003394828.1| alanyl-tRNA synthetase [Conexibacter woesei DSM 14684]
 gi|283948709|gb|ADB51453.1| alanyl-tRNA synthetase [Conexibacter woesei DSM 14684]
          Length = 888

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/923 (35%), Positives = 483/923 (52%), Gaps = 69/923 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
                IR TFL FFQ+  H  L S+ L+P  +DP+++ T +GM P K  F G E+P    
Sbjct: 3   MTSDEIRETFLSFFQQREHLRLQSAPLVPTAHDPSVLLTTAGMHPLKPYFQGVEQPPATR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T+ QKC RA     D++NVG T RH T FEMLGNFS G YFKE  I  AW+L T+ F L
Sbjct: 63  LTSCQKCFRA----TDIENVGNTLRHLTCFEMLGNFSIGDYFKEEVIAFAWELSTQGFGL 118

Query: 121 DQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D  R+++TV+  DEE        A +LW+K  G+  ++I+  +  DNFW    TGPCGPC
Sbjct: 119 DPERIWVTVFGGDEELGLGADEEAIELWQK-VGVPRERIVECSREDNFWQAGPTGPCGPC 177

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SE++ D+G          + E ER++E WNLVFMQ++Q        LP  +IDTG+GL R
Sbjct: 178 SELYLDRGLDFGAPDDLPAGENERFLEFWNLVFMQYDQNPVNTLAPLPSKNIDTGLGLNR 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
            A +LQ K + ++ D F  LI+  ++++G  Y  +       R++ DH R+ +FL+ADG+
Sbjct: 238 FAAMLQGKESVFETDQFWPLIELGQELSGRSYGQDEATTRALRILADHSRAMTFLVADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NE RGY+LRR+MRRA+ + R +G     +      +   MG+AYPE+++    I + 
Sbjct: 298 VPSNEDRGYILRRVMRRAIQHGRRIGIEPGFLPKFAARVEQIMGAAYPEIVEHSDAIRKW 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           L +E+E FG+TL++G  LLD +++   ++    L  +  F+L+DT+G P+DI ++I    
Sbjct: 358 LVAEEESFGRTLEQGTKLLDELIAQAKREGEEGLGAEDVFRLHDTYGFPIDITREIAAEH 417

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA---TQFIGYDLLRG 465
            L G+D   F Q +++QR+RARA + G G+        + +   GA   ++F GY     
Sbjct: 418 DL-GVDEPGFEQLMDQQRARARAGAGGKGATGDGLRERAQELAGGAAFQSEFTGY----- 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T    + V A+        EA    +V V   ++PFYA  G
Sbjct: 472 ------------------ATTAQETTVGAL--------EAEDDGRVLVKLVESPFYAAGG 505

Query: 526 GQLGDTGCAIGDGIRLQI---TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           GQ+ D+G         +      ++       V     ERG L+    +   +D Q R  
Sbjct: 506 GQVSDSGWVECADGDCRAEVLDVLRVAGGADQVVVVRPERGALKPGEHVHAVVDRQARHA 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHLLH AL   LG HV Q GS + PD LRFD TH + ++  EL+ +ED VN+ 
Sbjct: 566 TEANHTATHLLHAALRRRLGGHVRQAGSAVQPDKLRFDFTHGQALSPDELRDVEDEVNEW 625

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  N PV       ++A   GA AL G KY D VR+V V     G  S  LCGGTHV ST
Sbjct: 626 VLANFPVRALTTTLDEAKRLGAMALFGEKYGDVVRMVEVG---DGSFSRELCGGTHVRST 682

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI L  + +E+S  A +RRIEAITG  A   L   D  L+  A+ L+ +   V   V++
Sbjct: 683 AEIGLFRVTAETSSAANVRRIEAITGPAAVRLLREHDGALRDAATALRATPEQVPAEVDK 742

Query: 763 IWEEYRKLQLIHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +    ++L+    +     N           +         ++  I   D K L  V D 
Sbjct: 743 LRVRVKELEKAAKQGAGAGNGALDVDALVAGATEHGGGARVVAAAIELPDPKALPDVADR 802

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           L+ K+    I+L  +S + +  ++  V   L++R   A  + +++A+V GGGG GGR  M
Sbjct: 803 LKGKLGDAAIVLGTVS-DGRVHLVASVAPALVERGVKAGAIVKVAAEVTGGGG-GGRDTM 860

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           A++GG +  K  +AI    + ++
Sbjct: 861 ARAGGRDPEKLSEAIDAARTAIE 883


>gi|209862801|ref|NP_001093987.1| alanyl-tRNA synthetase, cytoplasmic [Rattus norvegicus]
 gi|261260086|sp|P50475|SYAC_RAT RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|149038198|gb|EDL92558.1| alanyl-tRNA synthetase [Rattus norvegicus]
          Length = 968

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/969 (32%), Positives = 473/969 (48%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ +F++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINYFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTVDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEAKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCQTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRAKG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                 +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 478 LEATDDSPK----YNYHSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G LR    + L I
Sbjct: 534 FYAEQGGQIFDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLRVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-DADQKGSLVAPDRLRFDFTAKGAMSTEQIKKT 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+ VN +I    PV T            G  A+    Y D VRVVS+             
Sbjct: 653 EEIVNGMIEAAKPVYTLDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 772

Query: 744 SLASFL------KVSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL++             +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 773 SLSAMEVKVKAQSAPNKDVQKEIADLGEVLATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|325697162|gb|EGD39049.1| alanine--tRNA ligase [Streptococcus sanguinis SK160]
          Length = 872

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/913 (35%), Positives = 489/913 (53%), Gaps = 66/913 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIA-MGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++   Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSSKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + L   EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLDINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +    +L+     + F           
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLQAITVESAF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +++ + A+V     VE   SG    ++F +TPFYAE GGQ+
Sbjct: 462 -------------NYEKEELTAELLAVVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G         +      +KA      H +     L    S  L ID+  R ++  NH
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLAPLALGQSYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI +
Sbjct: 628 AIETVETDIDTAKGMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG  
Sbjct: 803 SDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGSK 857

Query: 882 GNKADQAIAGVAS 894
            +     +A VA 
Sbjct: 858 QSAIPALLAAVAE 870


>gi|327281303|ref|XP_003225388.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Anolis
           carolinensis]
          Length = 969

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/974 (32%), Positives = 469/974 (48%), Gaps = 97/974 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F+ FF +N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFINFFVENQHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A + A DLLTKE
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKFALDLLTKE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +          D +  ++W  + GL  D+I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGNEAAGLQPDLDCKQIWLDL-GLPEDRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEMHYDRI-GGRDASHLVNQDDPNVLEIWNLVFIQFNREADGTLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGCRPYTGQVGEDDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+PE
Sbjct: 304 TITVALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLNAPRGFFATLVDVVVESLGGAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL+RG  +LD  +  LG ++++ GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLNRGRRILDRKIQSLGDNKVIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G G  + I   +           
Sbjct: 424 LTGLIAEEKGLK-VDMEGFEE----ERKAAQLKSQGKGGGDEDLIILDIYAI-------- 470

Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            + LR       D                     + VKA+ ++   VEE  +GQ+  +V 
Sbjct: 471 -EELRSKGLKATDDSLKYNYASDPSGTYEFQSPVATVKALRREKVFVEEVSTGQECGIVL 529

Query: 516 DQTPFYAEAGGQLGDTGC-----AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           DQT FYAE GGQ+ D G        G   + + T    +  G +V H     G L+   +
Sbjct: 530 DQTCFYAEQGGQIYDEGYLVKEEDEGSEDKTEFTVKNVQVRGGYVLHVGTVYGSLKVGDT 589

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L ID   RR +  NH+ATH+L+ AL  +LG    Q GS + PD LRFD T    +++ 
Sbjct: 590 VRLYIDEPRRRPVMSNHTATHILNFALRAVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQ 648

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE------- 682
           E+K  E  VN +I +   V  +           G  A+    Y D VRVVS+        
Sbjct: 649 EIKKAEAIVNQMIQEAKVVYAKECALAAAKAIQGLRAVFDETYPDPVRVVSIGIPIEDML 708

Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                  G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L   
Sbjct: 709 ADPSNAAGAITSVEFCGGTHLQNSSHAGHFVIVSEEAIAKGIRRIVAVTGAEAQKALRKV 768

Query: 739 D---EKLKSLASFLKVSQ--------------GNVVGRV------EEIWEEYRKLQLIHA 775
           +   + L  L + +KV                 ++   V      +E+ E  + L+ I  
Sbjct: 769 ESLKKLLADLEAKVKVQTAPNKDVQHEIADLGESLATAVIPQWQKDELRESLKALKKIMD 828

Query: 776 ------KRKLQLNVEDLSCHKIADVN----FMSHIISEVDSKELKSVMDALQKKIQSGII 825
                 K  +Q  V D     I         +  + S   +K L   +  L+        
Sbjct: 829 DLDRACKADIQKRVLDKMKQLIEAHPNQPLVILEMESGASAKALNESLKLLKTHSPETAA 888

Query: 826 MLVGISKE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ML  +  +  K + L  V +D++     A +  +  +  L  G GGG+   AQ+ G N +
Sbjct: 889 MLFTVDNDAGKITCLCQVPQDVVSKGLKASEWVQQVSG-LMDGKGGGKDLSAQATGKNTD 947

Query: 884 KADQAIAGVASFLK 897
              +A+     F K
Sbjct: 948 CLKEALEVATDFAK 961


>gi|83305847|sp|Q3YSV8|SYA_EHRCJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 887

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/909 (40%), Positives = 533/909 (58%), Gaps = 60/909 (6%)

Query: 1   MSNVS---SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M   +    IR  F++FF KNGH+L PSS LI  +DP+L+FTN+GMV FK++FT      
Sbjct: 1   MKESNLVGDIRKLFVDFFIKNGHQLFPSSPLIVKDDPSLLFTNAGMVQFKHVFTDASNAN 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                + QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE A++LAW  +TKE
Sbjct: 61  VGTAVSSQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKEFAVELAWSFVTKE 120

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             L++ +LY TVY ED+E F LWKKISG S ++II+I TNDNFWSM  TGPCGPCSEIF+
Sbjct: 121 LALNKDKLYFTVYHEDQETFDLWKKISGFSENRIIKIKTNDNFWSMGSTGPCGPCSEIFY 180

Query: 178 DQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D GE I GGLP    E+G R+ EIWNLVFMQ+ +++  E   LPK  IDTGMGLER++ V
Sbjct: 181 DYGEDIEGGLPGTPEEDGARFTEIWNLVFMQYNRKSDGELCALPKKCIDTGMGLERISAV 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NYDI+LFK LI+ S++ +G     NN + HRVI DH+RS++FLIA+G+ P NEG
Sbjct: 241 MQGVHDNYDINLFKDLIKVSKKQSGNT---NNELAHRVIADHVRSAAFLIAEGLTPGNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETL 351
           R Y+LRRI+RRA  Y  +L Y   LM  + P+L  E     M   YPELI AK LI   L
Sbjct: 298 RDYILRRIIRRAARYVYMLKYDGALMYQIFPSLIDEKSYAYMADYYPELINAKDLIISIL 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E F  TL + L LL+  L  L    +L GD+AFKLYDT+G P+DI  DI+  +G+ 
Sbjct: 358 KIEEENFKDTLVKALPLLEKELVGLSSGGVLPGDIAFKLYDTYGFPVDITLDIIKEKGIK 417

Query: 412 GIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             D   F   +++Q+ R++ +  +        K+W  +KE YG T+F+GY+         
Sbjct: 418 -FDEQGFYDQMDKQKERSKLNHSIKSVQQLKGKLWVDIKEHYGGTKFVGYEQYSTR---- 472

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              + V +I+ +G +  E A  G +V V+ D TPFYAE+GGQ G
Sbjct: 473 -------------------AKVLSIIYEGDKSTEVANVGDRVNVLLDITPFYAESGGQKG 513

Query: 530 DTGCA----------IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           DTG            +     +++ D +K  + +++H  +++ G L     +   ++ + 
Sbjct: 514 DTGVFNVIVRQGKELLSCDDVVEVLDTKKVLDTLYIHECVIKTGSLIVGDIICAEVNCEK 573

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ L  NHSATHLLH+ L +++   + Q GS ++ D LRFD ++   +T  +L  IED +
Sbjct: 574 RKNLCANHSATHLLHYVLKSVIDRSIIQKGSLVSDDKLRFDFSYGVALTKEQLTLIEDKM 633

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTH 698
             +I  N PVVT I + ++AIA GA AL   KY D  VRV+++        S  LC GTH
Sbjct: 634 FSLIRNNSPVVTHICDLKEAIADGAVALFTEKYEDHGVRVINIGD------SKELCCGTH 687

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  TGEI    IVSE+S+  G+RRIEA+TGQ A  +   Q++ L  +A  +K    N++ 
Sbjct: 688 VRYTGEIGCFKIVSEASVACGVRRIEAVTGQHAIDYFREQEKMLHLIAESVKSPIDNILI 747

Query: 759 RVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           +++++    ++L+   +      +N++ ++  KI  ++F+   ++ V    ++  ++   
Sbjct: 748 QIDKLNRNNQELKQKLSDAYFSVINLQGIATDKIGSIDFLYSSLNSVPIDVVRKFINE-- 805

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             + + +IM       +    +I V  +L  +  A D   +  +V+    GGG   +AQ 
Sbjct: 806 -HLVNDMIMFFSNVVGRNVMYVIGVASNLHSKIKATDFVEIIGEVIKS-KGGGNNQLAQI 863

Query: 878 GGPNGNKAD 886
            G    + D
Sbjct: 864 SGEYIKEVD 872


>gi|269837587|ref|YP_003319815.1| alanyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269786850|gb|ACZ38993.1| alanyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 879

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/912 (35%), Positives = 494/912 (54%), Gaps = 54/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  F+EFF + GH  +PSSSL+P NDPT++ T +GM      F G E+P    +
Sbjct: 1   MKSNEIRRIFVEFFAERGHLHVPSSSLVPHNDPTVLLTTAGMQQMTPYFLGLERPPSVRM 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T++QKC R      D+D VG    H TFFEMLGNFS G YFK  AI  AW+LLT+ F + 
Sbjct: 61  TSIQKCFRTV----DIDEVG-DEEHLTFFEMLGNFSVGDYFKAEAISWAWELLTERFGIP 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + RL  +V+  DE AF  W+   G+    I R+    N+W  +  TGP GP SEIF+D+G
Sbjct: 116 RERLRPSVHRNDEFAFAFWRDEIGIPEHLIARLGDEHNWWGPVGTTGPNGPDSEIFYDRG 175

Query: 181 ECIPGGLPGSSEEGERY---IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E +  G P      +     +EIWNLVFM+F ++    +  LP+ +IDTGMGLER++ VL
Sbjct: 176 EELGCGRPDCGPGCDHCNRFLEIWNLVFMEFYKEEDGSQRPLPRKNIDTGMGLERISMVL 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   + ++ DL+  ++  + ++ G++Y  +     + RVI DH R+ +FLI DG+ P NE
Sbjct: 236 QGVGSVFETDLYMPVLLKAAELAGVQYRQDPKVDRSLRVIADHGRAVTFLIGDGVFPGNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GR YVLRR++RRA+ + RL+G   P +  +   +       YP L + +  I + +R E+
Sbjct: 296 GRSYVLRRVLRRAVRHGRLIGIDRPFLTEVADVVIDMFAEHYPNLREQQERIRQVIRHEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E FG+TL  G+   + + + L      ++ G  AF+LYDT+G P ++ +++    GL  +
Sbjct: 356 EHFGRTLATGIGRFETLAADLRARGETVVPGAEAFRLYDTYGFPYELTEELASDAGLT-V 414

Query: 414 DIISFNQALEEQRS--RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           D   F++A+  QR   RA A      + T   ++ +L +K   T F+GY+          
Sbjct: 415 DREGFDRAMAAQREQSRASAAIFSDEARTRAALYANLTDK--PTVFLGYETTE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            +  V  I+      E A +G++VE+V DQTPFY E GGQ+GDT
Sbjct: 466 ----------------ATGTVVGILGAEAAQESAEAGEQVEIVLDQTPFYPEGGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D    ++ D Q+ A G+ VH  IV  G ++   +    +D Q R  +  NH+ATH
Sbjct: 510 GNIQTDTGVFEVEDTQRPAPGVIVHRGIVREGYIQVGQTAEARVDAQRRADIRRNHTATH 569

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS + PD LRFD T  +P+ +A L+ +++ VN  I  + PV  
Sbjct: 570 LLHTALRRVLGEHVQQAGSLVAPDRLRFDFTSLEPVGAAALREVQEIVNQQILADSPVQA 629

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I   ++AIA GA AL G KY D VRVV++        S  LCGGTHV+ TGEI L  I 
Sbjct: 630 EIKPYQEAIAEGAIALFGEKYGDNVRVVTIPS-----FSKELCGGTHVNHTGEIGLFVIT 684

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ESS+ +G+RR+EA+TG+ A  + +   E  + L   L V    +  +V  + E  R+ +
Sbjct: 685 EESSVASGVRRVEALTGRAAAEYALRLQEMSQRLVRDLHVPLDELPAQVAALQERLRERE 744

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + +++L    +         +     ++  +   +   L  + D L+ K+ SG+++
Sbjct: 745 REIERLRVELASVQIGDLIEKAVTVDGTRVLAARVEAPNRDTLLQMGDRLRDKLASGVVV 804

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  +  + + ++L +VT DL+ R  +A  L R    V+GG G GGRP +AQ GG + ++ 
Sbjct: 805 LGAV-IDDRPALLAMVTRDLVQRGVDAGKLIREITPVVGGRG-GGRPELAQGGGTDPSRL 862

Query: 886 DQAIAGVASFLK 897
           D A+    S ++
Sbjct: 863 DAALETARSVVE 874


>gi|116331894|ref|YP_801612.1| alanine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280371|sp|Q04QG6|SYA_LEPBJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116125583|gb|ABJ76854.1| Alanine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 940

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/975 (32%), Positives = 471/975 (48%), Gaps = 119/975 (12%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   +VS IR  FL +F+   H ++PSSSL+P  DPTL+FT +GMV FK +FTG  +  Y
Sbjct: 1   MKRQSVSEIREIFLNYFKDKAHAVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ QKC+R      DL+ VG+T RH TFFEMLGNFSFG YFKE AI  A D      
Sbjct: 61  TRATSCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIDYALDCSVNHL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFF 177
             D+ ++++TVY +D+EA K+W    G+  ++I R+   DNFW    ++G CGPCSE++ 
Sbjct: 117 GFDKEKIWVTVYTDDDEAEKIWITK-GIPKERITRLGKKDNFWGPAGDSGACGPCSELYL 175

Query: 178 DQGECIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           D+G    G      G      + +R++E WN+VF QF Q  +     L +  IDTG GLE
Sbjct: 176 DRGVEKGGPDCATSGTCRPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-------------------NNIVNH 272
           R+A +LQ   + YD +  + +I   E+++G+KY+                    N     
Sbjct: 236 RVALLLQGADSVYDTNELRKIISFYEELSGIKYDDVITLSKMPTQKNNTARIAANQKAAF 295

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH+RS  F I DGI P   GRGYV+RR++RRA  + R L + EP +  L+  +   
Sbjct: 296 RVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLVDKVVEI 355

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKL 390
               YPEL +    I++T+ +E+E F KTL+ GL  ++ +++        I +G  AF L
Sbjct: 356 YKPRYPELGKNSAAIQKTILAEEELFLKTLELGLEKIETLVAKTKTSGKTIFSGADAFLL 415

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           Y T+G P ++ ++I+  +GL   D   F + LE+ R  +R            K+     +
Sbjct: 416 YGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQLSRESWK------ANKVSLMTGQ 468

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
               T+F+GY  L G                          +  +  + +       GQ 
Sbjct: 469 SVEKTEFLGYSSLSG-----------------------KGNIIHLFNENKPAGALKEGQA 505

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             +V ++TPFY E GGQ+GDTG         ++ D  +K   + +H   V  G       
Sbjct: 506 GAIVLNKTPFYPEGGGQVGDTGFLRQGKNVFKVLDT-QKENDVILHFGEVLSGEFSIAQE 564

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           L   ++   R +L  +HS THLL+ AL  +LG HV Q GS ++P+ LRFD +H   +TS 
Sbjct: 565 LEAEVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSK 624

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E++ IE  VN+ I +N PVVT+ +  EDA   GA A  G KY DRVRVV +     G  S
Sbjct: 625 EIRKIESWVNESIRKNYPVVTKELPIEDAKKIGAVATFGEKYGDRVRVVQM-----GDAS 679

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGGTHVS TGEI   +I  ESS  AG RRIE + G         +  +L      L 
Sbjct: 680 VEFCGGTHVSHTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRFAELTESVQNLN 739

Query: 751 VS--------------------QGNVVGRVEE-----------IWEEYRKLQLIHAK--R 777
           +                        +  ++E+           + EE             
Sbjct: 740 LKIKSELDNEGSKILVNSNVPGPDEIREKLEKEGATAVTFFRDLSEEIASQIEESTSAFL 799

Query: 778 KLQLNVEDLSCHKIADV--------------NFMSHIISEVDSKELKSVMDALQKKIQSG 823
           K++ ++E       A V                +S I  + D   LK + D L+ + ++ 
Sbjct: 800 KMKKSLESRDFENNASVIEKVFASSMDTGVGKIVSAIFDDKDPNSLKGLSDNLKVREKNL 859

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +++L   + +  + V+   ++ +    +  DL R   ++L GG GGG+P MAQ GG    
Sbjct: 860 LVILGSKNADNASVVITCSSQLVSKGIHCGDLVRTVCEML-GGKGGGKPDMAQGGGKEKQ 918

Query: 884 KADQAIAGVASFLKK 898
             + AI+      K+
Sbjct: 919 NLESAISFAIQLAKQ 933


>gi|183220780|ref|YP_001838776.1| alanyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910880|ref|YP_001962435.1| alanyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|205830131|sp|B0SGD3|SYA_LEPBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830132|sp|B0SPT4|SYA_LEPBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167775556|gb|ABZ93857.1| Alanine--tRNA ligase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779202|gb|ABZ97500.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase; AlaRS) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 919

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/952 (34%), Positives = 490/952 (51%), Gaps = 96/952 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             V  I   +  +FQ  GH ++PSSSLIP  DPTL+FT +GMV FK +FTG  +  Y   
Sbjct: 4   KTVQEIARLYTNYFQDKGHTIVPSSSLIPKGDPTLLFTTAGMVQFKPLFTGAVELPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQKCVR      DL+ VG+T RH TFFEMLGNFSFG YFK+ AI+ A D      ++ 
Sbjct: 64  ASVQKCVRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKKEAIEYALDFSLNHLEIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + ++++T+Y +D+EA K W  + G+  ++I+R+   DNFW    ++G CGPCSE++ D+G
Sbjct: 120 KDKIWVTIYLDDDEAKKFWMDL-GIPEERIVRLGKKDNFWGPAGDSGACGPCSELYLDRG 178

Query: 181 ECIPGGLPGSS------EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               G   G++       + +RY+E WNLVF QF Q    E   L +  IDTG GLER+A
Sbjct: 179 PEKGGPTCGNNPNCKPGCDCDRYLEYWNLVFNQFNQTVSGELLPLKQTGIDTGSGLERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQE  + YD D  K +I+  E ++G KY+     + RVI DH RS  F + DGI P  
Sbjct: 239 MLLQEVDSVYDTDELKSIIKQIEILSGYKYDETTKQSFRVITDHSRSVFFSLGDGIYPDR 298

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GRGYV+RR++RRA  +AR LG  EP +  L+  L       YPEL      IE  L+ E
Sbjct: 299 TGRGYVIRRLIRRASLFARKLGIHEPFLYKLVSTLKDLYSLRYPELKDKAKDIESILKKE 358

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E F  TL+ GL  L+ VL HL   K  ++ G   F+LY T+G P ++ ++++  RG + 
Sbjct: 359 EELFLHTLEVGLEELETVLEHLKKEKQTVVTGKEGFRLYSTYGFPREMTKELVEERGFSF 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
            D   F + LE+ R  +RA   G           S       T+F+GY   +        
Sbjct: 419 DD-KGFEEELEKDRYLSRASWKGKKIQYLTGFSAS---PELKTEFLGYTETK-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  +   G+ V     G++  +V D+TPFYAE GGQ+GDTG
Sbjct: 467 ---------------AKSRVLHLFVDGKSVTSTKQGEEAVIVLDKTPFYAEGGGQIGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +G + Q+ D  +K    F+H  ++ +G L     +   I+ + R+ L+ +HS THL
Sbjct: 512 YLKKEGFQFQVQDT-QKENDTFLHMGMILKGNLSVGDVVDSEIEVERRQNLANHHSGTHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L+ AL  ILGSHV+Q GS ++ D LRFD +H K ++  E+  IE +VN+ ++ N+PV T 
Sbjct: 571 LNGALRRILGSHVTQKGSIVSADYLRFDFSHPKALSKEEIIQIETDVNEAVSANIPVKTE 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           ++    A  SGA ++   KY   VRV+S+     G  S   CGGTHVS+T EI    IV 
Sbjct: 631 VLEIGQAKESGALSMFDEKYGSVVRVISM-----GDKSKEFCGGTHVSNTKEIGFFAIVK 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKS---------------------------- 744
           E S  AG RRIEAI G+   ++ + Q + L S                            
Sbjct: 686 EGSPGAGNRRIEAICGESVVNYFLHQFQTLASKIETHNLSAKETFGDLKEFGITKEVPSP 745

Query: 745 --LASFLKVSQGNVVGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-- 794
             L +        VV R+ +      I  E +   L  AK+K +     ++   +  +  
Sbjct: 746 EILQTMFHQDGKEVVTRLRKLREELEIELEEKSSALFKAKKKREQKEFQMNPELVDGLLQ 805

Query: 795 --------NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
                     ++ +   VD+K LK + D+L+ K    I+ L G ++ + ++++ +  + L
Sbjct: 806 KAHHFPKGKVVTEVFPSVDAKSLKDLADSLKAKEPE-ILCLFGTTEGESSTLVFMCNKVL 864

Query: 847 LDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +R  +  D+ + +  V+  G GGGRP MAQ GG       +++    S  K
Sbjct: 865 NERGIHCGDILKETL-VMLDGKGGGRPDMAQGGGKKPESVAKSLEFALSLAK 915


>gi|256752916|ref|ZP_05493749.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748196|gb|EEU61267.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 757

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/785 (41%), Positives = 472/785 (60%), Gaps = 43/785 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + VTT 
Sbjct: 7   NEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L   R
Sbjct: 67  QRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEVLGLPVNR 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++++Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGP SEI+FD+GE   
Sbjct: 123 LWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEKG 181

Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P      + +R+IE WNLVF QF +  +     LP  +IDTGMGLER+AT++Q   +
Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIATIMQGVDS 241

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D+ + +     Q+  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGYV
Sbjct: 242 IFDVDVIRGITNFVSQIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I  K  I+  ++ E+ERF +
Sbjct: 302 LRRLLRRAARHGKLLGINDTFLYRVVDSVVENYGEAYPEIIDRKDYIKRIVKLEEERFKE 361

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+GL +L   ++ L      +L G  AFKLYDT+G PLD+ ++IL   G+  +D   +
Sbjct: 362 TIDQGLTILQDYINELKVQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEEGY 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + LE+QR RAR+      S   + I+ +L +    T+F+GYD                 
Sbjct: 421 TKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDTYES------------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     +S V AIV+  E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    + 
Sbjct: 466 ----------NSKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDNGILENEN 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + +++ D +K  +  F+H   +ERG++     +   ID  +RR  + NH+ATHLLH AL 
Sbjct: 516 VLIKVKDCKKVGDR-FIHIGTIERGLISVRDEVKAQIDVVSRRNAARNHTATHLLHKALK 574

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       ++
Sbjct: 575 EILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTYDE 634

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  GA AL   KY D+VRVV +       +S  LCGGTHV +T EI +  IVSES++ A
Sbjct: 635 AVKEGAVALFTEKYGDKVRVVKI-----DDYSMELCGGTHVKNTNEIGIFKIVSESAVGA 689

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG  A  +L  ++E LK  +  LK     +V ++E + +  +       + K
Sbjct: 690 GLRRIEALTGLAAIKYLEEKEEILKEASDLLKAQDKEIVSKIESLQQVLKTKDKEIEQLK 749

Query: 779 LQLNV 783
           +++  
Sbjct: 750 IKMAS 754


>gi|148679537|gb|EDL11484.1| alanyl-tRNA synthetase, isoform CRA_a [Mus musculus]
          Length = 1055

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/969 (32%), Positives = 476/969 (49%), Gaps = 88/969 (9%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
                IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 93   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 152

Query: 60   --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 153  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 212

Query: 118  FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 213  FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 271

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 272  GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 330

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 331  LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 390

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
            + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 391  TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 450

Query: 340  LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
            L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 451  LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 510

Query: 400  IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
            +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 511  LTGLIAEEKGL-VVDMNGFEE----ERRLAQLKSQGKGAGDEDLIMLDI-YAIEELRAKG 564

Query: 460  YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             +    S                 +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 565  LEATDDSPK----YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 620

Query: 520  FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 621  FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 680

Query: 576  DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
            D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 681  DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 739

Query: 636  EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
            E+ VN +I    PV T+           G  A+    Y D VRVVS+             
Sbjct: 740  EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 799

Query: 684  EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
              G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 800  PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 859

Query: 744  SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
            SL++    +K       +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 860  SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 919

Query: 790  KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
              ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 920  SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 979

Query: 831  SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 980  DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 1038

Query: 889  IAGVASFLK 897
            +    SF +
Sbjct: 1039 LQLATSFAQ 1047


>gi|73666779|ref|YP_302795.1| alanyl-tRNA synthetase [Ehrlichia canis str. Jake]
 gi|72393920|gb|AAZ68197.1| alanyl-tRNA synthetase [Ehrlichia canis str. Jake]
          Length = 891

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/909 (40%), Positives = 533/909 (58%), Gaps = 60/909 (6%)

Query: 1   MSNVS---SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M   +    IR  F++FF KNGH+L PSS LI  +DP+L+FTN+GMV FK++FT      
Sbjct: 5   MKESNLVGDIRKLFVDFFIKNGHQLFPSSPLIVKDDPSLLFTNAGMVQFKHVFTDASNAN 64

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                + QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE A++LAW  +TKE
Sbjct: 65  VGTAVSSQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKEFAVELAWSFVTKE 124

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             L++ +LY TVY ED+E F LWKKISG S ++II+I TNDNFWSM  TGPCGPCSEIF+
Sbjct: 125 LALNKDKLYFTVYHEDQETFDLWKKISGFSENRIIKIKTNDNFWSMGSTGPCGPCSEIFY 184

Query: 178 DQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D GE I GGLP    E+G R+ EIWNLVFMQ+ +++  E   LPK  IDTGMGLER++ V
Sbjct: 185 DYGEDIEGGLPGTPEEDGARFTEIWNLVFMQYNRKSDGELCALPKKCIDTGMGLERISAV 244

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NYDI+LFK LI+ S++ +G     NN + HRVI DH+RS++FLIA+G+ P NEG
Sbjct: 245 MQGVHDNYDINLFKDLIKVSKKQSGNT---NNELAHRVIADHVRSAAFLIAEGLTPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETL 351
           R Y+LRRI+RRA  Y  +L Y   LM  + P+L  E     M   YPELI AK LI   L
Sbjct: 302 RDYILRRIIRRAARYVYMLKYDGALMYQIFPSLIDEKSYAYMADYYPELINAKDLIISIL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E F  TL + L LL+  L  L    +L GD+AFKLYDT+G P+DI  DI+  +G+ 
Sbjct: 362 KIEEENFKDTLVKALPLLEKELVGLSSGGVLPGDIAFKLYDTYGFPVDITLDIIKEKGIK 421

Query: 412 GIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             D   F   +++Q+ R++ +  +        K+W  +KE YG T+F+GY+         
Sbjct: 422 -FDEQGFYDQMDKQKERSKLNHSIKSVQQLKGKLWVDIKEHYGGTKFVGYEQYSTR---- 476

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              + V +I+ +G +  E A  G +V V+ D TPFYAE+GGQ G
Sbjct: 477 -------------------AKVLSIIYEGDKSTEVANVGDRVNVLLDITPFYAESGGQKG 517

Query: 530 DTGCA----------IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           DTG            +     +++ D +K  + +++H  +++ G L     +   ++ + 
Sbjct: 518 DTGVFNVIVRQGKELLSCDDVVEVLDTKKVLDTLYIHECVIKTGSLIVGDIICAEVNCEK 577

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ L  NHSATHLLH+ L +++   + Q GS ++ D LRFD ++   +T  +L  IED +
Sbjct: 578 RKNLCANHSATHLLHYVLKSVIDRSIIQKGSLVSDDKLRFDFSYGVALTKEQLTLIEDKM 637

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTH 698
             +I  N PVVT I + ++AIA GA AL   KY D  VRV+++        S  LC GTH
Sbjct: 638 FSLIRNNSPVVTHICDLKEAIADGAVALFTEKYEDHGVRVINIGD------SKELCCGTH 691

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  TGEI    IVSE+S+  G+RRIEA+TGQ A  +   Q++ L  +A  +K    N++ 
Sbjct: 692 VRYTGEIGCFKIVSEASVACGVRRIEAVTGQHAIDYFREQEKMLHLIAESVKSPIDNILI 751

Query: 759 RVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           +++++    ++L+   +      +N++ ++  KI  ++F+   ++ V    ++  ++   
Sbjct: 752 QIDKLNRNNQELKQKLSDAYFSVINLQGIATDKIGSIDFLYSSLNSVPIDVVRKFINE-- 809

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             + + +IM       +    +I V  +L  +  A D   +  +V+    GGG   +AQ 
Sbjct: 810 -HLVNDMIMFFSNVVGRNVMYVIGVASNLHSKIKATDFVEIIGEVIKS-KGGGNNQLAQI 867

Query: 878 GGPNGNKAD 886
            G    + D
Sbjct: 868 SGEYIKEVD 876


>gi|212550874|ref|YP_002309191.1| alanyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549112|dbj|BAG83780.1| alanyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 872

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/921 (33%), Positives = 463/921 (50%), Gaps = 76/921 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +F ++F+   H+++ SS +I  NDPTLMFTN+GM  FK++  G     Y  +
Sbjct: 1   MTAKKIRQSFKDYFENKNHKIVSSSPMIIKNDPTLMFTNAGMNQFKDVILGNALVKYTRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ LT+   LD
Sbjct: 61  ANVQKCLRVNGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEYAWEYLTEILKLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T+++         D EA   W K   L    II     DNFW M   GPCGPCS
Sbjct: 121 KDRLYVTIFEGNSSEKLERDNEAANYWGKY--LPKSHIIDGNKKDNFWEMGNMGPCGPCS 178

Query: 174 EIFFDQGECIPGGLPGS----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           S    ++   + IEIWNLVFMQF ++       LP+  IDTGMG
Sbjct: 179 EIHIDIRSDEEREKVDSLTLINKNHPQVIEIWNLVFMQFNRKIDGSLENLPQKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+  V+Q K +NYD D+F+ +IQA   +T   Y  N+   +  RV+ DH+R+ +F IA
Sbjct: 239 FERLCMVVQGKASNYDTDVFQTIIQAISTITKFSYGQNSQRDIAIRVVADHIRTIAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y+   L      +  L+P+L   MG  YPELI  K +
Sbjct: 299 DGQLPSNTKAGYVIRRILRRAVRYSYTFLEQKRAFIYRLIPSLVDSMGEVYPELIAQKKM 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           +++ ++ E+  F +TL+ G  LL+  +  +       +NG   F LYDT+G PLD+++ I
Sbjct: 359 MQKVIKEEENSFLQTLEIGTKLLNKKIQEAKTKNKTTINGVDVFILYDTYGFPLDLIKLI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  + +  +D  SF+  + +Q+ RAR       +      W  L+E  G TQF+GYD + 
Sbjct: 419 LHEQNMK-MDKASFDAEMSKQKERARNA-----TTIETGDWIVLQE--GDTQFVGYDTIT 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +                              +  ++V D+TPFYAE 
Sbjct: 471 TQARILRCRKVKQKNT----------------------------EYYQIVLDKTPFYAEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD+G  I            K    + +H     +       +    +D + RR   
Sbjct: 503 GGQIGDSGQLIDSNGISISIIDTKCENNLVIHII--NQLPENLYDTFNAEVDARKRRATE 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG+HV Q GS ++ + LRFD +H K +T  E++ +E  +   I 
Sbjct: 561 CNHTATHLLHEALRLVLGTHVEQKGSYVSSEVLRFDFSHFKKVTEKEIRQLEKIITKKIR 620

Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           QN+     R +   +A   GA AL   KY + VRV+          S  LCGGTH +STG
Sbjct: 621 QNIALEEKRHIPLVEARRLGAIALFYEKYEENVRVIKFGS------SIELCGGTHTTSTG 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I    I+SE SI AGIRRIEAIT ++  S    Q + + +    L     +++  ++++
Sbjct: 675 YIGNFRIISEFSISAGIRRIEAITAEKVESFFYAQQDIIHNAKMLLN-HTSDLLQSIKKL 733

Query: 764 WEEYRKLQLIHAKRK------LQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDAL 816
             E   L+             ++  V        + +N    I+     +  +K +   +
Sbjct: 734 ISENILLKKQVETYNREKTIFIKNQVIKTKKQTPSGINLF--ILEGFFPASIVKDIAFQI 791

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA 875
             +             E K  + I+++ DL+    NA  + R ++K++  G GGG+ H A
Sbjct: 792 GSEFTEKSYFAAATVAEGKPLLTIMISNDLVKNGLNASQIVREASKIIK-GNGGGQSHFA 850

Query: 876 QSGGPNGNKADQAIAGVASFL 896
            +GG + N    A+  + + +
Sbjct: 851 TAGGKDINGLPMALKEILNKV 871


>gi|26336489|dbj|BAC31927.1| unnamed protein product [Mus musculus]
          Length = 968

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/969 (32%), Positives = 477/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMNGFEE----ERRLAQLKSQGKGAGDEDLIMLDI-YAIEELRAKG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                 +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 478 LEATDDSPK----YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS +TPD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVTPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+ VN +I    PV T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 772

Query: 744 SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL++    +K       +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 773 SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|323486958|ref|ZP_08092273.1| hypothetical protein HMPREF9474_04024 [Clostridium symbiosum
           WAL-14163]
 gi|323399730|gb|EGA92113.1| hypothetical protein HMPREF9474_04024 [Clostridium symbiosum
           WAL-14163]
          Length = 817

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/850 (36%), Positives = 474/850 (55%), Gaps = 48/850 (5%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L
Sbjct: 1   MTTCQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGL 56

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLY +VY ED+EAF +W K  G+  ++I R    DNFW     GPCGPCSEI++D+G
Sbjct: 57  DPDRLYPSVYLEDDEAFDIWNKEMGIPKERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRG 115

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      E +RYIE+WN VF QF          L   +IDTGMGLER+A V+Q
Sbjct: 116 EKYGCGSPDCTVGCECDRYIEVWNNVFTQFNNDGHGNYTELEHKNIDTGMGLERLAVVVQ 175

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
           E  + + +D  K L+    ++   KY+ N+   V+ R++ DH++S +F+I+DGI+P+NEG
Sbjct: 176 EVDSLFTVDTNKALLDRVCELAHTKYQENHETDVSLRIVADHIKSCTFMISDGIMPSNEG 235

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG     M  L   +       YPEL +   +I + L  E++
Sbjct: 236 RGYVLRRLLRRAARHGKKLGIEGKFMAELSKTVIALSKDGYPELEEKSAMIFKVLSEEED 295

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F KT+D+GL +L  + + +    + +L+GD AFKLYDT+G P+D+ ++IL  + L+ +D
Sbjct: 296 KFNKTIDQGLAILADMETEMAKNNETVLSGDNAFKLYDTYGFPIDLTREILEEKNLS-LD 354

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+++Q+ +ARA          +   +   +    T+F GY  L           
Sbjct: 355 EDGFTAAMKKQKEQARAARKTTNYMGADVTVYQSIDPAVTTEFDGYGKL----------- 403

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S +  +  + EIVE    GQ   ++  +TPFYA  GGQ  D G  
Sbjct: 404 ------------AEESEITVLTTETEIVEALTDGQAGTIIVKKTPFYATMGGQQADVGVI 451

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   + D  K   G   H   V +G+ +T  ++ L +D +NR     NHSATHLLH
Sbjct: 452 TAQDAEFTVKDTIKLQGGKVGHVGYVTKGMFKTGDTVTLKVDKENRELTERNHSATHLLH 511

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL T+LG+HV Q GS +T D LRFD TH   +T  E+ ++E  VND IA  LPV T +M
Sbjct: 512 KALRTVLGTHVEQAGSLVTKDRLRFDFTHFSAMTDEEIAAVEKLVNDEIAAALPVETMVM 571

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A  +GA AL G KY D VRVV +     G  S+ LCGGTHV +T  I    IVSE+
Sbjct: 572 TLDEAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVDNTSSISAFKIVSEA 626

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+T     ++    +++L   A  +K +   +  ++E + +E + L   +
Sbjct: 627 GIAAGVRRIEALTSTGLMNYYKEMEKELHEAARVVKSTPSGLTAKLESMLDEIKALHSEN 686

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K K +L  + L        ++  V  ++  + +VD   L+++ D L++K+  G++++  
Sbjct: 687 EKLKSKLANDSLGDVMNQVQEVNGVKLLAVQVKDVDMNGLRNLGDQLKEKLGEGVVVIAS 746

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           + ++ K +++  VT +   +  +A +L +  A ++GGGG GGRP+MAQ+GG N      A
Sbjct: 747 V-QDGKVNLMASVTGEAQKKGAHAGNLIKAIAGLVGGGG-GGRPNMAQAGGKNPAGIPDA 804

Query: 889 IAGVASFLKK 898
           +   A  +++
Sbjct: 805 LKKAAETVQE 814


>gi|34610207|ref|NP_666329.2| alanyl-tRNA synthetase, cytoplasmic [Mus musculus]
 gi|47117019|sp|Q8BGQ7|SYAC_MOUSE RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|23270912|gb|AAH33273.1| Alanyl-tRNA synthetase [Mus musculus]
 gi|26351767|dbj|BAC39520.1| unnamed protein product [Mus musculus]
 gi|148679538|gb|EDL11485.1| alanyl-tRNA synthetase, isoform CRA_b [Mus musculus]
          Length = 968

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/969 (32%), Positives = 476/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMNGFEE----ERRLAQLKSQGKGAGDEDLIMLDI-YAIEELRAKG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                 +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 478 LEATDDSPK----YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+ VN +I    PV T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 772

Query: 744 SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL++    +K       +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 773 SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|300173639|ref|YP_003772805.1| alanyl-tRNa synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299888018|emb|CBL91986.1| alanyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 893

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/932 (35%), Positives = 492/932 (52%), Gaps = 74/932 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   N S IR  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELNSSQIRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSAVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEM+GNFS G YFKE  I  AW+LLT  K
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEEGIPWAWELLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD+  LY+TVY +D EA K+W++ + +    I  +   DNFW + E GP GP SEIF
Sbjct: 117 WYGLDKELLYVTVYPKDTEAKKIWQEKTDIPEGHIYEV--EDNFWDIGE-GPSGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227
           FD+G+                E ERY+EIWN+VF QF       +  +   LP  +IDTG
Sbjct: 174 FDRGKDFQDLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNAQYPELPHKNIDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKY----EGNNIVNHRVIVDHLRSS 282
           MGLER+ +V Q+   N+D DLF  +I+A+E ++   KY       +  + +VI DH+R+ 
Sbjct: 234 MGLERVVSVFQKGRTNFDTDLFLPIIKATEALSDGFKYDSLVNSESNTSFKVIADHIRAV 293

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +F I DG LP+NEGRGYV+RR++RRA+ + + LG T   +  L+P +   M S YPE+++
Sbjct: 294 TFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGITGEFLTQLVPVVGDIMQSYYPEILE 353

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
               I++ + +E++RF  TL  GL LL+ V+  +       L+G  AFKL DT+G PL++
Sbjct: 354 NTPKIQKIIAAEEKRFNATLTGGLALLNQVINQAKAEGKTQLSGIDAFKLSDTYGFPLEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q+      L        +    ++     A +     G    +   LK    A+Q++G 
Sbjct: 414 TQEQAAEADLTVDIQGFNDALQAQRTRARAARANDKSMGIQNAVLTDLK---VASQYVG- 469

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVE----EAVSGQKVEVVF 515
                                  +T   ++ + AI+ Q  + V+     AV GQK+++VF
Sbjct: 470 ---------------------WSVTAVDNAKIMAIIGQDDQGVDALLSSAVKGQKLQLVF 508

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           D+TPFYAE GGQ+ D G  +    ++  ++ DVQ    G  +H   V      T+  + L
Sbjct: 509 DKTPFYAEMGGQVADYGEVLTATGKVIARVIDVQNAPNGQHIHTVDVLCDFKLTDT-VNL 567

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D      +S NH+ATH+L  +L  I+G  + Q GS + P+ LRFD T+  P++   ++
Sbjct: 568 QVDMARHIAVSKNHTATHMLDQSLRNIIGGDIHQAGSLVEPEYLRFDFTNEGPVSEENIE 627

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE  +N  IA NLPV     + E A   GA A+ G KY   VRVVS+     G  +   
Sbjct: 628 KIETLMNHEIANNLPVSWLETDIESAKKMGAVAVFGEKYGALVRVVSI-----GDFNKEF 682

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
            GGTHV ST E+ L  IVSES I AG+RRIEA+TG +A +    ++  LK++A+ +K  +
Sbjct: 683 DGGTHVKSTAELGLFKIVSESGIGAGVRRIEAVTGLQAIALYQAEENALKAIATTVKAQR 742

Query: 754 -GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSK 807
             +V  +V ++  E +  Q      + QL                  ++++  +      
Sbjct: 743 LTDVPSKVADMQLELKATQRKLESLESQLANAAATEVFSDVKTSHGHSYITAQLQVSGMD 802

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGG 866
            L+ V D  +    S +++L     + + ++++  +         A +L +  A  +GGG
Sbjct: 803 GLRQVADNWKMSYPSDVLVLAATV-DGRVNLIVTASPSANAAGIKAGELIKAIAPRVGGG 861

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G GGRP MAQ+GG N     +A A VA+FL K
Sbjct: 862 G-GGRPDMAQAGGKNPAGIAEAFADVANFLAK 892


>gi|116327492|ref|YP_797212.1| alanine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|122284708|sp|Q054G6|SYA_LEPBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116120236|gb|ABJ78279.1| Alanine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 940

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/975 (32%), Positives = 472/975 (48%), Gaps = 119/975 (12%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   +VS IR  FL +F+   H ++PSSSL+P  DPTL+FT +GMV FK +FTG  +  Y
Sbjct: 1   MKRQSVSEIREIFLNYFKDKAHAVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ QKC+R      DL+ VG+T RH TFFEMLGNFSFG YFKE AI  A D      
Sbjct: 61  TRATSCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIDYALDCSVNHL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFF 177
             D+ ++++TVY +D+EA K+W    G+  ++I+R+   DNFW    ++G CGPCSE++ 
Sbjct: 117 GFDKEKIWVTVYTDDDEAEKIWITK-GIPKERIMRLGKKDNFWGPAGDSGACGPCSELYL 175

Query: 178 DQGECIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           D+G    G      G      + +R++E WN+VF QF Q  +     L +  IDTG GLE
Sbjct: 176 DRGVEKGGPDCATSGTCRPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-------------------NNIVNH 272
           R+A +LQ   + YD +  + +I   E+++G+KY+                    N     
Sbjct: 236 RVALLLQGADSVYDTNELRKIISFYEELSGIKYDDVITLSKMPTQKNNTARIAANQKAAF 295

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH+RS  F I DGI P   GRGYV+RR++RRA  + R L + EP +  L+  +   
Sbjct: 296 RVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLVDKVVEI 355

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKL 390
               YPEL +    I++T+ +E+E F KTL+ GL  ++ +++        I +G  AF L
Sbjct: 356 YKPRYPELGKNSAAIQKTILAEEELFLKTLELGLEKIETLVAKTKTSGKTIFSGADAFLL 415

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           Y T+G P ++ ++I+  +GL   D   F + LE+ R  +R            K+     +
Sbjct: 416 YGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWK------ANKVSLMTGQ 468

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
               T+F+GY  L G                          +  +  + +       GQ 
Sbjct: 469 SVEKTEFLGYSSLSG-----------------------KGNIIHLFNENKPAGALKEGQA 505

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             +V ++TPFY E GGQ+GDTG         ++ D  +K   + +H   V  G       
Sbjct: 506 GAIVLNKTPFYPEGGGQVGDTGFLRQGKNVFKVLDT-QKENDVILHFGEVLSGEFSIAQE 564

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           L   ++   R +L  +HS THLL+ AL  +LG HV Q GS ++P+ LRFD +H   +TS 
Sbjct: 565 LEAEVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSK 624

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E++ IE  VN+ I +N PVVT+ +  EDA   GA A  G KY DRVRVV +     G  S
Sbjct: 625 EIRKIESWVNESIRKNYPVVTKELPIEDAKKIGAVATFGEKYGDRVRVVQM-----GDAS 679

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGGTHVS TGEI   +I  ESS  AG RRIE + G         +  +L      L 
Sbjct: 680 VEFCGGTHVSHTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRFAELTESVQNLN 739

Query: 751 VS--------------------QGNVVGRVEE-----------IWEEYRKLQLIHAK--R 777
           +                        +  ++E+           + EE             
Sbjct: 740 LKIKSELDNEGSKILVNSNVPGPDEIREKLEKEGATAVTFFRDLSEEIASQIEESTSAFL 799

Query: 778 KLQLNVEDLSCHKIADV--------------NFMSHIISEVDSKELKSVMDALQKKIQSG 823
           K++ ++E       A V                +S I  + D   LK + D L+ + ++ 
Sbjct: 800 KMKKSLESRDFENNASVIEKVFASSMDTGVGKIVSAIFDDKDPNSLKGLSDNLKVREKNL 859

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +++L   + +  + V+   ++ +    +  DL R   ++L GG GGG+P MAQ GG    
Sbjct: 860 LVILGSKNADNASVVITCSSQLVSKGIHCGDLVRTVCEML-GGKGGGKPDMAQGGGKEKQ 918

Query: 884 KADQAIAGVASFLKK 898
             + AI+      K+
Sbjct: 919 NLESAISFAIQLAKQ 933


>gi|73957022|ref|XP_536788.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
           (AlaRS) isoform 1 [Canis familiaris]
          Length = 968

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/969 (32%), Positives = 474/969 (48%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCNTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +G+  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGM-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAIEELRE-KG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                     V + V A+ +    VEE  +GQ+  VV D+T 
Sbjct: 478 LEATEDSPK----YNYHSDSSGSYTFENVVATVVALRRDKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        +++ T    +  G +V H     G LR    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVEDNSEDKMEFTVKNAQVRGGYVLHIGTIYGSLRVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N +I    PV T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLEDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L   +    
Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKN 772

Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL+   + +K       +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 773 SLSVMEAKVKAQTAPNKDVQREIADLGEVLATAVIPQWQKDEFRENLKSLKKIMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPETSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  + + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGRITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|149699352|ref|XP_001501062.1| PREDICTED: similar to LOC510933 protein [Equus caballus]
          Length = 968

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/969 (32%), Positives = 474/969 (48%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYAGKVGADDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG+ + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGESKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAIEELRE-KG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                 +     + V A+ +    VEE  +GQ+  VV D+T 
Sbjct: 478 LEATDDSPKYNYY----SDSSGSYVFESAVATVMALRRDKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N++I    PV T+  +        G  A+    Y D VRVVS+             
Sbjct: 653 EEIANEMIEAAKPVYTQDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKK 772

Query: 744 SLASFLK------VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL+              +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 773 SLSVMEGKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKIMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|83814294|ref|YP_445665.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|123528738|sp|Q2S2B6|SYA_SALRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83755688|gb|ABC43801.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 966

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/981 (32%), Positives = 484/981 (49%), Gaps = 123/981 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL+FFQ  GHE++PS+SL+P  D TL+FTN+GM  FK++F G  +  Y    
Sbjct: 19  SSEEIRQDFLQFFQAKGHEVVPSASLVPDGDGTLLFTNAGMNQFKDVFLGTGQRPYSRAV 78

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK  AI+ AW+LL + + L  
Sbjct: 79  DTQKCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKAEAIRWAWELLVERWGLAP 138

Query: 123 RRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            RLY TV++ D+        EA+ LW   + L  ++++   + +NFW M +TGPCGPCSE
Sbjct: 139 DRLYATVHEGDDDFGLSADAEAYDLWLSETPLPEERVLYEPSKENFWMMGDTGPCGPCSE 198

Query: 175 IFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           +  D           G    + +  + +E+WNLVF+Q+  Q       L    +DTGMG 
Sbjct: 199 LHVDLRPPEARQETPGRELVNVDHPQVMELWNLVFIQYNAQTDGSLEPLDDQHVDTGMGF 258

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQAS------EQVTGMKYEGNNIV--------NHRVIV 276
           ERM  VLQ K + YD DLF  L+QA       E++ G                   RV+ 
Sbjct: 259 ERMVAVLQGKESTYDTDLFAPLLQAMADRSPREEIRGYDDLHIEDDDEHEQVRIALRVVA 318

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGS 335
           DH+R+ +F I+DG++P+NEGRGYV+RRI+RRA+ Y    L   EP +  L+  L  +MG 
Sbjct: 319 DHIRAIAFAISDGVMPSNEGRGYVIRRILRRAVRYGYQTLELEEPFLHRLVDPLIEKMGG 378

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL---------------------- 373
            +  L + +  IE+ +RSE+E F +TL  G+   + V+                      
Sbjct: 379 PFDGLAEQQEFIEQAIRSEEESFLETLGTGIEFFERVVPHVTGFQDTDGEESDRLLGALR 438

Query: 374 --------------------------SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
                                     +   +   L G +AF L+DT+G P+D+ + +   
Sbjct: 439 EDAQAMDLLEKAYVDTDDENDILHSFARTARGGTLPGQIAFLLHDTYGFPIDLTRLMARE 498

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           R L  +D+  +   ++ Q+ RARA S      +  + W S+     A+ F+GYD      
Sbjct: 499 RDL-DVDMEGYETLMDRQQERARAASDFAVDQSDVQAWQSVS-PGEASVFVGYDR----- 551

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 + V+A+      V E    Q+ EV   +TPFYAEAGGQ
Sbjct: 552 -----------------AVVPDAEVRAV-----RVVETGDTQQYEVELSRTPFYAEAGGQ 589

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG        +Q+ D Q++ E I      V+      +  +   +D + R  +  +H
Sbjct: 590 VGDTGTLRFGDESVQVLDTQREGERIAHT---VDTLPEPLDGPVEAAVDAERRNHIRAHH 646

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHL+H  L   LG HV Q GS + PD LRFD +H   +    L+ IE  VN  I QN+
Sbjct: 647 TATHLMHAVLRETLGDHVQQKGSLVAPDRLRFDFSHFDAVDEDTLRHIERRVNTAIQQNI 706

Query: 648 PVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           P    R +  ++A+  GA AL   +Y DRVRV++ +       S  LCGGTHV +TGEI 
Sbjct: 707 PKQEARDVPIDEALDRGATALFDEQYGDRVRVITFDP----DFSMELCGGTHVDATGEIG 762

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L   +SE S+ +G+RR+EA+ G+ A  H+  + E L       +    ++   + E+ EE
Sbjct: 763 LFRFLSEGSVASGVRRVEAVAGKAALEHVESELETLTRARRQFRSLHTSLPEAIAEVQEE 822

Query: 767 YRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             +L     + +     + L      +   +  +  ++  +      +L+ +    + K+
Sbjct: 823 RDRLAGEVDQLRRGQLSDQLDTFIAENAASVDGITVVTGRLDRASMDDLQELGQQFRDKL 882

Query: 821 QSGII-MLVGISKEK-KASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             G + +L  + ++  KA V+  V +DL+D     A DL       LGGGG GGRP +A 
Sbjct: 883 GEGAVGVLGSVGEDGEKAYVVATVADDLVDDGALRAGDLVGTLGDRLGGGG-GGRPSLAS 941

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG +    D  + GV + ++
Sbjct: 942 AGGRDPEALDTVLDGVPALVR 962


>gi|195033960|ref|XP_001988798.1| GH11356 [Drosophila grimshawi]
 gi|193904798|gb|EDW03665.1| GH11356 [Drosophila grimshawi]
          Length = 967

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/970 (30%), Positives = 456/970 (47%), Gaps = 84/970 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
                +R  +L+FF++  H  + SSS IP +DPTL+FTN+GM  FK IF G   P     
Sbjct: 4   MTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFTNAGMNQFKPIFLGTADPNSEMS 63

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+
Sbjct: 64  KWVRTVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTE 123

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +          D E  + W  + GL  + I+  +  DNFW M ETGP
Sbjct: 124 RLRLPKDRLYVTYFGGDAASGLQPDLECKQFWMDL-GLKPEHILPGSMKDNFWEMGETGP 182

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ FD+           +++    +EIWNLVF+QF +++      LPK  ID GM
Sbjct: 183 CGPCSELHFDRI-GGRSVPELVNQDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHIDCGM 241

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279
           G ER+ +V+Q K +NYD DLF  L  A +            G        + +RV+ DH 
Sbjct: 242 GFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADHA 301

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+P
Sbjct: 302 RTITIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVSTVVDLLGDAFP 361

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLP 397
           E+ +    I + +  E+ +F KTL RG  LL+  +  L      + GDVA++LYDT+G P
Sbjct: 362 EVKKDPQHIMDIINEEELQFLKTLTRGRNLLNRTIEKLGTSQTTIPGDVAWRLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   + L  ID+  +       +  +   S G G+   ++I   +       + 
Sbjct: 422 VDLTQLMAEEKSL-QIDMAGYEA----AKQNSYILSQGKGASKIDEITLDVHAISELQE- 475

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            G        F      V  ++      +  +S + A+  + + V+E  SGQK  +V D+
Sbjct: 476 KGLPSTD-DSFKYNYEAVSVERDAAYNFSECTSKIVALRFENKFVQEISSGQKAGIVLDK 534

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE+GGQ+ D G  +            +    G ++ H  V  G L     L L ID
Sbjct: 535 TNFYAESGGQIYDQGVLVKLNDEANEFLVDRVYNRGGYILHIGVVEGNLAVGDELQLHID 594

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E
Sbjct: 595 VERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNCKAAMTIDQVARTE 654

Query: 637 DNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684
               D++ QN+P+  +           G  ++    Y D VRV+S              E
Sbjct: 655 KLTRDMVYQNMPIYAKESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDRLESQPDAE 714

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G   S   CGGTH+ ++G IM   I SE +I  GIRRI A+TG  A   +   +   + 
Sbjct: 715 TGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFEQE 774

Query: 745 LASFLKVSQGNVVGR--------VEEIWEEY--------RKLQLIH-----------AKR 777
           ++      + +  G+        + E+ E+         +K ++ +            +R
Sbjct: 775 ISQLQATIEADQSGKESKMYVKLIVELTEQISHATIPHVKKDEMRNLLKLLKKSLDDKER 834

Query: 778 KLQLNVEDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVG 829
            L+  V      +             + H +   ++ K L + +  ++ ++     M V 
Sbjct: 835 ALRAAVSVTVVERTKALCEAEPQAKVLVHQLEAYNNTKALDAALKQVRLQLPEAAAMFVS 894

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + KK   L  V +  +++   A +  +  + +L GG GGG+   AQ+ G N  + D+
Sbjct: 895 VDADSKKIFCLCSVPKAAVEKGLKANEWVQHVSSIL-GGKGGGKAESAQASGSNFERVDE 953

Query: 888 AIAGVASFLK 897
            +     F +
Sbjct: 954 IVQLANQFAQ 963


>gi|167756780|ref|ZP_02428907.1| hypothetical protein CLORAM_02329 [Clostridium ramosum DSM 1402]
 gi|237734498|ref|ZP_04564979.1| alanyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|167702955|gb|EDS17534.1| hypothetical protein CLORAM_02329 [Clostridium ramosum DSM 1402]
 gi|229382318|gb|EEO32409.1| alanyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 869

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/913 (35%), Positives = 493/913 (53%), Gaps = 63/913 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL+FF+  GH++ PS SLIP +DPTL++ N+G+   K  F G   P  
Sbjct: 1   MKQLTGNQVRKMFLDFFESKGHKVEPSHSLIPNDDPTLLWINAGVAAIKKYFDGTITPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+LLT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKDAIDFAWELLTDEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  ++ +LYITV+D DEEA+  W  + G++ D +++  T  NFW + E GPCGP SEIF
Sbjct: 117 WFAFEKDKLYITVHDHDEEAYDYWVNVKGVAVDHMLK--TPGNFWEIGE-GPCGPDSEIF 173

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           +D+GE                E +RYIEIWNLVF Q+  Q     ++   LP+ +IDTGM
Sbjct: 174 YDRGEKYDPDGLGTKLFYEELENDRYIEIWNLVFSQYNSQEGVAREDYKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+ +++Q    N+D D F  +I   E++  + Y   N + +RVI DH+R+ +F +AD
Sbjct: 234 GLERITSIIQGGETNFDTDFFLPIIHEVEKLANVSY-QENKMAYRVIADHIRTVTFALAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G L  N GRGYVLRRI+RRA+ Y + +G  +  M  L+  +   M   Y  L +    I 
Sbjct: 293 GALFDNAGRGYVLRRILRRAVRYGKQIGIEKAFMYDLVDVVSEIMKEFYDYLPEKVSYIS 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + ++ E+E F KTL  G  LL  +++    D +++G  AFKLYDT+G P ++  +I    
Sbjct: 353 DLVKKEEEAFHKTLTNGEKLLSSIIAK-NTDGVISGKDAFKLYDTYGFPFELTLEIAEES 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            L  +D  +F   L+ Q+ R+R       S  ++K    L      + F  YD       
Sbjct: 412 DLK-VDEEAFRAELKVQQERSRGARTDSESMASQK--PDLMAFDLPSNFE-YDPT----- 462

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              ++S+V  + + G   +        EV+FD T FYAE GGQ 
Sbjct: 463 ------------------NINSVVIGLFKDGVKTDRI--DDYGEVIFDTTTFYAEMGGQC 502

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    +  + ++ +V K      +H   ++ G +R    L L +D   R ++  NHS
Sbjct: 503 ADTGYVYNENCQGEVINVLKAPNQQHLHFVKLKTGTIRVGDILTLDVDKAKRNKIIANHS 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+L  AL  I+G H++Q GS +    LRFD TH + IT+ +LK IE+ VN++I   + 
Sbjct: 563 ATHILQAALKEIIGKHINQAGSYVDDHRLRFDFTHFEKITNEQLKLIENQVNNVIFDGVA 622

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V    M +++AI SGA AL   KY D+VRVVS+     G +S  LCGG HVS++  I L 
Sbjct: 623 VDIAHMTKDEAINSGAMALFDEKYGDKVRVVSI-----GDYSMELCGGCHVSNSANIGLF 677

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767
            I +E S+ +G+RRIEA+TG+ A   L+ + E +  +++ LK+ ++  VV +V  + EE 
Sbjct: 678 KIEAEESVGSGVRRIEAVTGKTAYQALVQEKETVDIISNILKLKNRKEVVAKVTALTEEL 737

Query: 768 RKLQLIHAKRKLQLNV--EDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQSG 823
              +        QLN        + I ++N +  +  E  +D+ + K +    + KI+ G
Sbjct: 738 SNTKKEIEILSGQLNALNAASKANDIQEINGVKVLFVEEMIDAAKAKQLAFDFRDKIEEG 797

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++LV    E K S  + VT++ +   + A D+ +    V+  G GGG+P  AQ G P  
Sbjct: 798 IVILV-TQFEDKCSYFVGVTKNYVATGYKAGDIIKKINAVV-DGRGGGKPDFAQGGCPIN 855

Query: 883 NKADQAIAGVASF 895
           +K       + +F
Sbjct: 856 DKISNIKGELKNF 868


>gi|328781428|ref|XP_395392.3| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Apis
           mellifera]
          Length = 1194

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/972 (31%), Positives = 455/972 (46%), Gaps = 86/972 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           M     IR  +++FF+  GHE + SSS IP +DPTL+FTN+GM  FK IF G   P    
Sbjct: 4   MMTAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGIVDPNSDM 63

Query: 60  ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                    QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LT
Sbjct: 64  AKLVRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICTWAWEFLT 123

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
            +  L   RLY+T +          DEE  ++W  + GLS   ++     DNFW M ETG
Sbjct: 124 VKLKLSSDRLYVTYFGGDEKNNLKPDEECKQIWLSL-GLSPTHVLPGNMKDNFWEMGETG 182

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGP SEI +D+           +++    +EIWNLVF+QF ++N     +LPK  ID G
Sbjct: 183 PCGPSSEIHYDRIGN-REAAHLVNQDDPDVLEIWNLVFIQFNRENDGNLKLLPKKHIDCG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDH 278
           +GLER+ +++Q K+ NYD DLF  L  A ++ T           +      + +RV+ DH
Sbjct: 242 LGLERLVSIIQNKSANYDTDLFMPLFDAIQKGTKAPSYQGKVGKEDINGIDMAYRVLADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG +P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +
Sbjct: 302 ARTITIALADGGVPDNTGRGYVLRRILRRAVRYAIEKLNAKPGFFGSLVNVVVDLLGDVF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+ +    I + +  E+ +F KTL RG  LL+  +  L    IL GDVA++LYDT+G P
Sbjct: 362 PEVTKDPQHIIDIINEEETQFLKTLSRGRNLLNRTIVKLESSNILPGDVAWRLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQ 456
            D+ Q +   +GL    I          +  A+  S        ++I   +        +
Sbjct: 422 FDLTQLMAEEKGLKVDVIGYEEA-----KKEAQLISQNKSGEVDDQINLDIHAITELQNE 476

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
            I              + +  +           S + A+ +    V+E  SG++V ++ D
Sbjct: 477 KI---KPTNDIPKYNYKVISNKIYEEYEFAPCFSTIIALRRAKTFVDEVSSGEEVGILLD 533

Query: 517 QTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           QT FYAE GGQ+ D G    I D          +   G  +H  IV +G L+    +   
Sbjct: 534 QTNFYAEQGGQIYDEGFLTKIDDEDSEVHIKNVQVRGGYILHIGIVSQGKLKKNDKVFSN 593

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID   RR L  NH+ATH+L++AL  ILG+ V Q GS + PD LRFD T+   +T+ +++ 
Sbjct: 594 IDTTRRRLLMSNHTATHVLNYALREILGTEVDQKGSLVAPDRLRFDFTNKGAMTTEQIRK 653

Query: 635 IEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE----------- 682
           +E+  N+II +N  V  +  N        G  A+    Y D VRVVS+            
Sbjct: 654 VEEITNNIINENKMVYAKECNLGLAKTIQGLRAMFEETYPDPVRVVSIGIPVEDLEKNPL 713

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QD 739
             D    S   CGGTH+  TG I    IVSE +I  GIRRI A+TG  A           
Sbjct: 714 SSDALKTSVEFCGGTHLHYTGHIKNFIIVSEEAIAKGIRRIVALTGPEAIKAQKKTSMLQ 773

Query: 740 EKLKSL-----ASFLKVSQGNVVGRVEEIWEE-----------------YRKLQLIHAKR 777
             L  L     A    ++    + ++ E+ ++                  + L+ I   +
Sbjct: 774 NYLDELQITIEADKNGINTKEHIKKIIELTDDVSHAIISSWKKDEIRKMLKDLKKILDDK 833

Query: 778 KLQLNVEDLSC---------HKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIML 827
           +  +     +           +      +  I+    ++K L S +  ++        +L
Sbjct: 834 ERAIKTAITNVVLDNIQQIIQQNIGCLVLVEILQAYSNTKALDSALKKIRTISPETSALL 893

Query: 828 VGISKE-KKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           + I  + KK   L  V++  +     A +  +    ++  G GGG+   AQ+ G N +  
Sbjct: 894 ISIDPDAKKIFALSSVSKFAINKGLKANEWIQEIVPLME-GKGGGKSESAQASGTNISCV 952

Query: 886 DQAIAGVASFLK 897
            + I    +F  
Sbjct: 953 TKLIYTAKNFAN 964


>gi|149640710|ref|XP_001506284.1| PREDICTED: similar to Alanyl-tRNA synthetase isoform 2
           [Ornithorhynchus anatinus]
          Length = 963

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/968 (33%), Positives = 476/968 (49%), Gaps = 91/968 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
           + S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   SASEIRQRFIDFFKRNRHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +          D E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGNEAAGLDPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYMGQVGADDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  ++     L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASKGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDGKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +           
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAI-------- 470

Query: 460 YDLLRGSKFMKEDR--KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            + LR       D   K   +           S VKA+ ++   V+E  +GQ+  VV D+
Sbjct: 471 -EELRARDLEVTDDSPKYNYRANASGSYGRFPSTVKALRREKTFVDEVSTGQECGVVLDK 529

Query: 518 TPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ+ D G  +  D      T    +  G +V H     G L+    + L ID
Sbjct: 530 TCFYAEQGGQIFDEGYLVKDDDGSEDFTVKNVQVRGGYVLHIGTVYGNLKVGDQVRLFID 589

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E+K  E
Sbjct: 590 EPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQEIKKTE 648

Query: 637 DNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684
           +  N +I    PV  +           G  A+    Y D VRVVS+              
Sbjct: 649 EIANGMIQAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVAELLEDPSSP 708

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK--- 741
            G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  A+  L   +     
Sbjct: 709 AGSLTSVEFCGGTHLRNSGHAGAFVIVSEEAIAKGIRRIVAVTGTEAQKALRKAESLKTA 768

Query: 742 LKSLASFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCHK 790
           L  L + +K       +V   + ++ E        ++ K +L  A + L+  ++DL    
Sbjct: 769 LSVLEAKVKAQTAPNKDVQKEIADLGETLATAVVPQWHKDELREALKALKKIMDDLDRAS 828

Query: 791 IADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            ADV                     +  + S   +K L   +   +        ML  + 
Sbjct: 829 KADVQKRVLEKTKQLIESQPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVD 888

Query: 832 KE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            E  K + L  V ++  ++   A +  +  +  L  G GGG+   AQ+ G N     +A+
Sbjct: 889 NEAGKITCLCQVPQNAANKGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLPEAV 947

Query: 890 AGVASFLK 897
               SF +
Sbjct: 948 QLATSFAQ 955


>gi|57238881|ref|YP_180017.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58578810|ref|YP_197022.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|81557351|sp|Q5HC27|SYA_EHRRW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57160960|emb|CAH57866.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417436|emb|CAI26640.1| Alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 887

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/913 (41%), Positives = 538/913 (58%), Gaps = 58/913 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS +R  F++FF KNGH+  PSS L+  +DP+L+FTN+GMV FK  FT  +        +
Sbjct: 7   VSDLRRLFIDFFVKNGHQFFPSSQLVIKDDPSLLFTNAGMVQFKQRFTSVDDRSINTAVS 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAWD +TKE  LD++
Sbjct: 67  SQKCLRVGGKHNDLENVGHTNRHHTFFEMLGNFSFGSYFKERAIELAWDFVTKELALDKK 126

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLYITVY +D++AF LWKKIS  S DKII+I TNDNFWSM   GPCGPCSEIF+D GE +
Sbjct: 127 RLYITVYHDDQDAFNLWKKISSFSDDKIIKIKTNDNFWSMGNVGPCGPCSEIFYDYGESV 186

Query: 184 PGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GGLP    E+G R+ EIWNLVFM++ +  + E  +LP+  IDTGMGLER+A V+Q   +
Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMEYNRTEEGELSVLPRKCIDTGMGLERIAAVMQGVHD 246

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDI+LFK LI  S++ +G     +  + HRVI DH+RS++FLIA+G+ P NEGR Y+LR
Sbjct: 247 NYDINLFKALIAMSKKESGNS---SCEIAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357
           RI+RRA  Y  +L YT+ LM  + P L  E     M   YPEL +AK LI   L++E+E 
Sbjct: 304 RIIRRAARYVYMLKYTDSLMYKIFPVLIDETSNAYMADYYPELFKAKDLIISILKTEEEN 363

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL R L LL+  L++L   ++L+GD+ F+LYDT+G P+DI  DI+  RG    D   
Sbjct: 364 FKDTLVRALPLLEKELTYLSTGDVLSGDIIFRLYDTYGFPVDITLDIIKERG-IRFDEKG 422

Query: 418 FNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   +E+Q++R+R    +        KIW  +++ Y  T+F+GYD  +            
Sbjct: 423 FYDNMEQQKTRSRLSHLIKSTEQLNGKIWEDIRQNYNNTRFVGYDNFQ------------ 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-- 533
                      V S + ++V   +  V  A  G KV ++ D TPFYAEAGGQ  DTG   
Sbjct: 471 -----------VQSKILSMVMNNDRNVTVANVGDKVSILMDITPFYAEAGGQQADTGLLS 519

Query: 534 --------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
                     G      +T+ +   +G+++H  IV+ G L     +   I+   R+ L  
Sbjct: 520 VVRRDGKDLFGSSNIADVTNTKNIFDGLYIHECIVKSGSLIIGDIVSAEINSHRRKDLCA 579

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH+ L   + +++ Q GS +  D LRFD +++  +T  ++K IE+ + D+I Q
Sbjct: 580 NHSATHLLHYILRMEIDNNIMQKGSLVGNDKLRFDFSYNMALTEKQIKLIENRMCDLIRQ 639

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           N PV T I N ++A+ +GA AL   KY N  VRVV++        S  LC GTHV  TGE
Sbjct: 640 NHPVETNICNLQNAMDNGAIALFTEKYDNHEVRVVNIGN------SKELCCGTHVKYTGE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I+SESSI  GIRRIEA+TGQ A  +   Q++ L  +A  +K    +V+ ++++I 
Sbjct: 694 IGCFKIISESSIACGIRRIEAVTGQYAIDYFRQQEKVLYQVAESVKSPVEDVLVQIDKIN 753

Query: 765 EEYRKL-QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            E ++L Q + A     ++++ ++  KI ++NF+   +S V    ++     + K++   
Sbjct: 754 RENQELKQKLWAAYFDIIDMQGVNIEKIGNINFLHGTLSSVPIDVVRKF---IMKRLVKD 810

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +IML           ++ V   L  +  A D  ++   V+    GGG   +AQ       
Sbjct: 811 MIMLFSNVVNHNKIYVVGVGNSLHSKVKAADFVKIIGCVVKS-KGGGNAQLAQISTEYIA 869

Query: 884 KADQAIAGVASFL 896
           + D  I  +   L
Sbjct: 870 EVD-VIQHIKDEL 881


>gi|332020821|gb|EGI61219.1| Alanyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]
          Length = 1010

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/969 (31%), Positives = 451/969 (46%), Gaps = 86/969 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
            N   IR  +++FF+  GHE + SSS IP +DPTL+FTN+GM  FK IF G   P     
Sbjct: 42  MNAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMA 101

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK      AW+ LT 
Sbjct: 102 KWVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKNEICAWAWEFLTD 161

Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L   RLY+T +          D+E   LW  + G+ A  ++     DNFW M ETGP
Sbjct: 162 VLKLPADRLYVTYFGGDEKSGLAPDDECKNLWLSL-GVPASHVLPGNMKDNFWEMGETGP 220

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           + +    +EIWNLVF+Q+ ++       LPK  ID G+
Sbjct: 221 CGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQYNRELNGSLKSLPKKHIDCGL 279

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +V+Q K  NYD D+F  L  A E+ TG                 + +RV+ DH 
Sbjct: 280 GLERLVSVIQNKRANYDTDVFMPLFAAIEEGTGAPPYQGKVGADDVNGIDMAYRVLADHA 339

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG +P N GRGYVLRRI+RRA+ YA   L   +     L+  +   +G  +P
Sbjct: 340 RTLTIALADGGVPDNTGRGYVLRRILRRAVRYATEKLNAKQGFFGSLVNVVVDLLGDVFP 399

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I E +  E+ +F KTL RG  LL+  ++ L   + + GDVA++LYDT+G P+
Sbjct: 400 EVRKDPQSIIEIINEEESQFLKTLSRGRNLLNRTIAKLESADTVPGDVAWRLYDTYGFPI 459

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL            EE + +A+  S     G  ++I F +   +  T+  
Sbjct: 460 DLTQLMTEEKGLKIDI-----AGYEESKKQAQLISQNKAGGVDDQINFDV---HAITELQ 511

Query: 459 GYDLLRGSKFMKEDRKVLCQ-KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
              +       K D KV  + K         +  V A+ +    V+E  SG++V ++ D+
Sbjct: 512 KQGVKPTDDSPKYDYKVTTEIKYKEYEFAPCTGTVIALRRAKTFVDEVSSGEEVGILLDR 571

Query: 518 TPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           T FYAE GGQ+ D G    + D          +   G  +H   V  G LR    +   +
Sbjct: 572 TNFYAEQGGQIYDEGFLVKVDDETTEIRIKNVQIRAGYVLHIGTVGEGTLRKGDKVHTNV 631

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + RR +  NHSATH+L++AL  +LG+   Q GS + PD LRFD T+  P+T  +L+  
Sbjct: 632 DTERRRFVMANHSATHVLNYALRKVLGTKADQKGSLVAPDRLRFDFTNKGPMTGGQLQDT 691

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E   N++I +N  +  +  N        G  A+    Y D VRVVSV             
Sbjct: 692 EQLANNVITENEKIYAKESNLAIAKTIQGLRAMFEETYPDPVRVVSVGIPVENLEKDPLS 751

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
                 S   CGGTH+  T  I    IVSE +I  GIRRI A+TG  A   L       +
Sbjct: 752 TAALETSVEFCGGTHLHYTSHIGNFTIVSEDAIAKGIRRIVALTGPEAAKALRTGMLLQR 811

Query: 744 SLASFL--------KVSQGNVVGRVEEIWEE-----------------YRKLQLIHAKRK 778
            L+ F         + +    V  + E+ EE                  + L+     ++
Sbjct: 812 QLSQFQASIEDDKSETNSKEYVREIVELTEEISHALIPAYWKDHMRNTLKNLKKSLDDKE 871

Query: 779 LQLNV---------EDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLV 828
                                      +  ++    ++K L   +  ++        +L+
Sbjct: 872 RAAKATVATTVVQTAQSIIESKVGCQVLVEVLEAYSNTKALDQALKKIRAISPETSALLI 931

Query: 829 GISKE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            I  + KK   L  V +  +     A +  +     L  G GGG+   AQ+ G N    +
Sbjct: 932 SIDHDVKKIFALSSVPKSAVSKGLKANEWIQAITS-LMQGKGGGKSESAQASGSNIVCLN 990

Query: 887 QAIAGVASF 895
           + ++    F
Sbjct: 991 EIVSKANEF 999


>gi|268561116|ref|XP_002646367.1| C. briggsae CBR-ARS-2 protein [Caenorhabditis briggsae]
 gi|187029911|emb|CAP31121.1| CBR-AARS-2 protein [Caenorhabditis briggsae AF16]
          Length = 967

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/977 (28%), Positives = 453/977 (46%), Gaps = 98/977 (10%)

Query: 1   MS--NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M     S +R+TF+EFF +K  H  + SSS+IP +DPTL+F N+GM  FK +F G   P 
Sbjct: 1   MKHLTASEVRSTFIEFFREKKNHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPN 60

Query: 58  Y-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWD 112
                 +     QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG YFK+  I  AW+
Sbjct: 61  SDLAKLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWE 120

Query: 113 LLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           LLT  + +   RLY++V+  DE        EA ++W+   G+  ++I+     DNFW M 
Sbjct: 121 LLTTVYGIPAERLYVSVFGGDEANGVPADSEAREIWRS-VGVPEERILNFGMKDNFWEMG 179

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           + GPCGPCSEI +D+           + +    +EIWNLVF+QF ++       LP   I
Sbjct: 180 DVGPCGPCSEIHYDRIGNRD-ASHLVNADDPMVVEIWNLVFIQFNREEGGALKSLPAKHI 238

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+  V+Q+KT+NYD D+F+ + +   + +G++    +          + +RV+
Sbjct: 239 DCGLGLERLIAVMQDKTSNYDTDIFQPIFEEITKKSGVRAYTGHIGDEDKDGVDMAYRVV 298

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+P + + +G
Sbjct: 299 ADHIRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYATEKLNAQPGFFAALVPVVISILG 358

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDT 393
             +PEL +  + + + +  E+++F KTL RG VL    +  L    +   GD+A++LYDT
Sbjct: 359 DTFPELKRDPVTVMDIINDEEKQFLKTLSRGRVLFQRAVDSLPAGTKTFPGDIAWRLYDT 418

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEK 451
           +G P D+ Q +   +GL+ +D  +F  A ++    + A +          +     L++K
Sbjct: 419 YGFPADLTQLMAEEKGLS-VDETAFEDARKKAIETSSAGAGKFRDTLDLDVHALAELQQK 477

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
              T                          +         + AI + G+ V++ V+G++ 
Sbjct: 478 GIPT--------TDDSPKYAYSFTGEGSEAVYKFEPCVGKILAIRRDGKFVDQLVAGEEG 529

Query: 512 EVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            V+ D+T FYAE GGQ+ D G  +       +      +  G ++       G      +
Sbjct: 530 AVLLDRTNFYAEQGGQIYDVGVLSKSGDESNEFNVSNCQVRGGYIVLVGSAEGSFSVGDN 589

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D   ++ +  NH+ TH+L++AL  +L     Q GS + PD +RFD T+   +T  
Sbjct: 590 VNQRFDEDRKQLIMKNHTGTHVLNYALRKVLA-DSDQKGSLVAPDRMRFDFTNKAAMTPE 648

Query: 631 ELKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYE----- 684
           ++K  E+    +I     V  +     +    +G  A+    Y D VRVV+V        
Sbjct: 649 QVKQAEEYAQQLINAKGQVYAKNSPLEDAKKINGLRAMFDETYPDPVRVVAVGTPVEQLL 708

Query: 685 ------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                  G   +   CGGTH+ +   I  + I SE +I  GIRRI A+TG  A   +   
Sbjct: 709 QNPEAEAGQNTTVEFCGGTHLQNVSHIGRIVISSEEAIAKGIRRIVALTGPEADRAIARA 768

Query: 739 DEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQ---------------LIHAKRKLQ-- 780
           +     L    K      ++   ++  E  +K+Q                   ++K +  
Sbjct: 769 ERLEARLVDESKHAKNQEILSNKDKFKELQKKIQEIVDEANGAQLPYWRKDALRKKAKDV 828

Query: 781 --------LNVEDLSCHKIADVN------------FMSHIISEVDSKELKSVMDALQKKI 820
                      +     K+                 +    S  +SK + + +  L+   
Sbjct: 829 QKDMDGYSKAQQAAVAEKVLGEAKELAAAAEQPPVLVHVFASNANSKAIDNALKLLKDT- 887

Query: 821 QSGIIMLVGISKE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
               +M   ++++  K   L  V + L+ +   A +       +L GG GGG+   AQ  
Sbjct: 888 --KAVMAFSVNEDTGKVLCLAKVDKSLVSNGLKANEWVNEVCTIL-GGKGGGKEANAQLT 944

Query: 879 GPNGNKADQAIAGVASF 895
           G N +K D A+     F
Sbjct: 945 GENVDKLDDAVELAQKF 961


>gi|24216106|ref|NP_713587.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|41018228|sp|Q8F0T4|SYA_LEPIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|24197348|gb|AAN50605.1|AE011499_4 alanyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 977

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/987 (32%), Positives = 480/987 (48%), Gaps = 110/987 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +VS IR  FL +F+   H ++PSSSL+P  DPTL+FT +GMV FK +FTG  +  Y   
Sbjct: 4   KSVSEIREIFLNYFKDKSHNVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKC+R      DL+ VG+T RH TFFEMLGNFSFG YFKE AI+ A D     F  D
Sbjct: 64  TSCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIEYALDCSVNHFGFD 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + ++++TVY +D+EA K+W    G+  ++I R+   DNFW    ++G CGPCSE++ D+G
Sbjct: 120 KNKIWVTVYTDDDEAEKIWLSK-GIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRG 178

Query: 181 ECIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               G      G      + +R++E WN+VF QF Q  +     L +  IDTG GLER+A
Sbjct: 179 IEKGGPNCATSGTCKPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------------------------- 268
            +LQE  + YD +  + +I   E+++G+ YE                             
Sbjct: 239 LLLQEVDSVYDTNELRKIISFYEELSGISYEDKTLSEISEKKNNNQQISSQVRNETKSIQ 298

Query: 269 ---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
                  RV+ DH+RS  F I DGI P   GRGYV+RR++RRA  + R L + EP +  L
Sbjct: 299 DSRKTAFRVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKL 358

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILN 383
           +  +     + YPEL +    I +T+  E+E F KTL+ GL  ++ ++         I +
Sbjct: 359 VDKVIEIYKARYPELQRNAAAITKTILVEEELFLKTLELGLEKIESLVQKTKAGGKTIFS 418

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G  AF LY T+G P ++ ++I+  +GL   D   F + LE+ R  +R             
Sbjct: 419 GADAFLLYGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWKVNKVSLMTG 477

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKE----DRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
           +          T+F+GY  + G   +        K       +D     S+         
Sbjct: 478 LNVD------KTEFLGYSSVSGKGNITHLFYNSPKSSNSLSQVDSKLQSSTPAGTGSYDS 531

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           + V     GQ   +V ++TPFY E GGQ+GD G         ++ D QK+ + I      
Sbjct: 532 KQVSSLKEGQAGAIVLNKTPFYPEGGGQVGDIGFLRQGKNVFKVFDTQKENDSIIHF-GE 590

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V  G       L   ++   R +L  +HS THLL+ AL T+LG HV Q GS ++P+ LRF
Sbjct: 591 VLSGEFIVSQELEAEVEITRRERLKFHHSGTHLLNGALRTLLGDHVLQKGSIVSPEYLRF 650

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +H   +TS E++ IE  VN+ I +N PV T+ ++ EDA  +GA A  G KY +RVRVV
Sbjct: 651 DFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKKTGAVATFGEKYGERVRVV 710

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +     G  S   CGGTHVS TGEI   +I  ESS  AG RRIE + G         + 
Sbjct: 711 QM-----GDASIEFCGGTHVSRTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRF 765

Query: 740 EKLKSLASFLKVSQ------------------------------------------GNVV 757
            +L      L +                                             N+ 
Sbjct: 766 SELTESVQNLNLKIKSELGEEGTKILILSFIPGPDEIREKLEKEGASAVSFFRDLSENIA 825

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSV 812
            ++EE    + K++   A+R  + N   +     + V       +S I  + D   LK +
Sbjct: 826 TKIEENTSSFLKIKKNLAERDFENNTSVIENVLASSVDTGIGKIVSAIFEDKDPNSLKGL 885

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGR 871
            D L+ + ++ +++L   + E  AS++I  + +L     +  +L + + ++L GG GGGR
Sbjct: 886 SDNLKVREKNLLVILGSRNSEN-ASIVITCSSELTLKGIHCGNLIKTACELL-GGKGGGR 943

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ GG      + AIAGV +  K+
Sbjct: 944 PDMAQGGGKEKQNLESAIAGVINEAKQ 970


>gi|74213943|dbj|BAE29394.1| unnamed protein product [Mus musculus]
          Length = 968

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/969 (32%), Positives = 475/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMRDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMNGFEE----ERRLAQLKSQGKGAGDEDLIMLDI-YAIEELRAKG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                 +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 478 LEATDDSPK----YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+ VN +I    PV T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 772

Query: 744 SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL++    +K       +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 773 SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             A V                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKAGVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|155371881|ref|NP_001094545.1| alanyl-tRNA synthetase, cytoplasmic [Bos taurus]
 gi|151553989|gb|AAI48084.1| AARS protein [Bos taurus]
 gi|296478238|gb|DAA20353.1| alanyl-tRNA synthetase [Bos taurus]
          Length = 968

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/969 (32%), Positives = 474/969 (48%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAGEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSRILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGRVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F++    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTALIAEEKGL-VVDMDGFDE----ERKLAQLKSQGKGAGGEDLIMLDIYAIEELRE-KG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                 +     + V A+ +    VEEA +GQ+  VV D+T 
Sbjct: 478 LEATDDSPK----YSYHSDSSGTYVFESAVATVMALRRDRMFVEEASTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ  D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQTYDEGYLVKVDDSSEDKTEFTVKNTQVRGGYVLHIGTLYGSLKVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N++I    PV T   +        G  A+    Y D VRVVS+             
Sbjct: 653 EEIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKK 772

Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL    + +K       +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 773 SLCVVEAKVKAQAAPNKDVQREIADLGEALATAIIPQWQKDEFRENLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSSPNQPLVILEVESGASAKALNEALKLFKMHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  + + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGRITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|58616869|ref|YP_196068.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|75356993|sp|Q5FH56|SYA_EHRRG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58416481|emb|CAI27594.1| Alanyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 887

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/893 (42%), Positives = 533/893 (59%), Gaps = 57/893 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS +R  F++FF KNGH+  PSS LI  +DP+L+FTN+GMV FK IFT  +        +
Sbjct: 7   VSDLRRLFIDFFVKNGHQFFPSSPLIIKDDPSLLFTNAGMVQFKQIFTSVDGRSINTAVS 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+LAW+ + KE  LD++
Sbjct: 67  SQKCLRVGGKHNDLENVGHTNRHHTFFEMLGNFSFGSYFKEHAIELAWNFVIKELALDRK 126

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLYITVY +D++AF LWKKIS  S DKII+I TNDNFWSM   GPCGPCSEIF+D GE +
Sbjct: 127 RLYITVYHDDQDAFNLWKKISSFSDDKIIKIKTNDNFWSMGNVGPCGPCSEIFYDYGESV 186

Query: 184 PGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GGLP    E+G R+ EIWNLVFM++ +  + E  +LP+  IDTGMGLER+A V+Q   +
Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMEYNRTKEGELSVLPRKCIDTGMGLERIAAVMQGVHD 246

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDI+LFK LI  S++ +G     +  + HRVI DH+RS++FLIA+G+ P NEGR Y+LR
Sbjct: 247 NYDINLFKALIAMSKKESGNS---SCEIAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357
           RI+RRA  Y  +L YT+ LM  + P L  E     M   YPEL++AK +I   L++E+E 
Sbjct: 304 RIIRRAARYVYMLKYTDSLMYKIFPVLIDETSNAYMADYYPELLKAKDMIISILKTEEEN 363

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL R L LL+  L++L   ++L+GDV F+LYDT+G P+DI  DI+  RG    D   
Sbjct: 364 FKDTLVRALPLLEKELTYLSAGDVLSGDVIFRLYDTYGFPVDITLDIIKERG-IRFDEKG 422

Query: 418 FNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   +E+Q++R+R    +        KIW  +++ Y  T+F+GYD  +            
Sbjct: 423 FYDNMEQQKTRSRLSHLIKSTEQLNGKIWEDIRQNYNNTRFVGYDNFQ------------ 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-- 533
                      V S + ++V   +  V  A  G KV ++ D TPFYAEAGGQ  DTG   
Sbjct: 471 -----------VQSKILSMVMNNDRNVTVANVGDKVSILMDVTPFYAEAGGQQADTGLLS 519

Query: 534 --------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
                     G      +T+ +   +G+++H  I++ G L     +   I+   R+ L  
Sbjct: 520 VVRRDGKDLFGSSNIADVTNTKNIFDGLYIHECIIKSGSLIIGDIVSAEINSHRRKDLCA 579

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH+ L   + +++ Q GS +  D LRFD +++  +T  ++K IE+ + D+I Q
Sbjct: 580 NHSATHLLHYILRMEIDNNIMQKGSLVGNDKLRFDFSYNMALTEKQIKLIENRMCDLIRQ 639

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           N PV T I N +DA+ +GA AL   KY N  VRVV++        S  LC GTHV  TGE
Sbjct: 640 NHPVETNICNLQDAMDNGAIALFTEKYDNHEVRVVNIGN------SKELCCGTHVKYTGE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I+SESSI  GIRRIEA+TGQ A  +   Q++ L  +A  +K    +V+ ++++I 
Sbjct: 694 IGCFKIISESSIACGIRRIEAVTGQYAIDYFRQQEKVLYQVAESVKSPVEDVLVQIDKIN 753

Query: 765 EEYRKL-QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            E ++L Q + A     ++++ ++  KI ++NF+   +S V    ++     + K++   
Sbjct: 754 RENQELKQKLWAAYFDIIDMQGVNIEKIGNINFLHGTLSGVPIDVVRKF---IMKRLVKD 810

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +IML           ++ V   L  +  A D  ++   V+    GGG   +AQ
Sbjct: 811 MIMLFSNVVNHNRIYVVGVGNSLHSKVKAADFVKIINCVVKS-KGGGNAQLAQ 862


>gi|149640708|ref|XP_001506178.1| PREDICTED: similar to Alanyl-tRNA synthetase isoform 1
           [Ornithorhynchus anatinus]
          Length = 968

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/973 (32%), Positives = 476/973 (48%), Gaps = 96/973 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
           + S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   SASEIRQRFIDFFKRNRHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +          D E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGNEAAGLDPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYMGQVGADDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  ++     L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASKGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDGKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +           
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAI-------- 470

Query: 460 YDLLRGSKFMKEDRKVLCQK----PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            + LR       D                     + VKA+ ++   V+E  +GQ+  VV 
Sbjct: 471 -EELRARDLEVTDDSPKYNYRANASGSYEFESPVATVKALRREKTFVDEVSTGQECGVVL 529

Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           D+T FYAE GGQ+ D G  +    G   + + T    +  G +V H     G L+    +
Sbjct: 530 DKTCFYAEQGGQIFDEGYLVKDDDGSEDKTEFTVKNVQVRGGYVLHIGTVYGNLKVGDQV 589

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E
Sbjct: 590 RLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQE 648

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682
           +K  E+  N +I    PV  +           G  A+    Y D VRVVS+         
Sbjct: 649 IKKTEEIANGMIQAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVAELLE 708

Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                 G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  A+  L   +
Sbjct: 709 DPSSPAGSLTSVEFCGGTHLRNSGHAGAFVIVSEEAIAKGIRRIVAVTGTEAQKALRKAE 768

Query: 740 EK---LKSLASFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVED 785
                L  L + +K       +V   + ++ E        ++ K +L  A + L+  ++D
Sbjct: 769 SLKTALSVLEAKVKAQTAPNKDVQKEIADLGETLATAVVPQWHKDELREALKALKKIMDD 828

Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           L     ADV                     +  + S   +K L   +   +        M
Sbjct: 829 LDRASKADVQKRVLEKTKQLIESQPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAM 888

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L  +  E  K + L  V ++  ++   A +  +  +  L  G GGG+   AQ+ G N   
Sbjct: 889 LFTVDNEAGKITCLCQVPQNAANKGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGC 947

Query: 885 ADQAIAGVASFLK 897
             +A+    SF +
Sbjct: 948 LPEAVQLATSFAQ 960


>gi|300121464|emb|CBK21983.2| unnamed protein product [Blastocystis hominis]
          Length = 935

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/952 (32%), Positives = 452/952 (47%), Gaps = 88/952 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            + +R TF+EFF++ GH  + SS ++P +DPTL+F N+GM  +K IF GQ  P       
Sbjct: 11  SAKVRQTFIEFFEERGHTFVKSSPVVPLDDPTLLFANAGMNQYKPIFLGQVDPSSPLAKL 70

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLTK +
Sbjct: 71  KRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEGAINFAWELLTKVY 130

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD  RLY T ++         DEEA+ +W+  + L  D I++   +DNFW M E GPCG
Sbjct: 131 KLDPSRLYATYFEGSEEDGVPCDEEAYAIWR--THLPDDHILKGNKHDNFWEMGEVGPCG 188

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           +++    +EIWNLVFMQF + +      LP   +DTGMG 
Sbjct: 189 PCSEIHYDRI-GGRNAADLVNKDDPNVLEIWNLVFMQFSRDSTGALHPLPAKHVDTGMGF 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRS 281
           ER+ ++LQ K +NYD D+F  L +A   V+G+                + +RV+ DH+R+
Sbjct: 248 ERITSILQNKMSNYDTDVFLPLFKAIHAVSGVSEYTGLVAGQNGAQKDMAYRVVADHIRT 307

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  I DG  P+N GRGYVLRRI+RR + Y +  L         L+P +   M SA+PEL
Sbjct: 308 LTMAITDGAAPSNTGRGYVLRRILRRGVRYGQQILKCKPGFFSQLVPTVVENMKSAFPEL 367

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPL 398
            +    ++E +  E+  F +TL++GL               +++ GDVAF LY T G P+
Sbjct: 368 EEKMCFVQEVILDEELSFNRTLEKGLKRFAQEAEACQASGAKVITGDVAFFLYGTLGFPI 427

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ + +    GL  +D+  FNQA+E  R  A+ +       TT  +              
Sbjct: 428 DLTELMAEEAGLK-VDMEGFNQAIERARMEAKTNKKNGAEQTTLVM-------------- 472

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--AVSGQKVEVVFD 516
             +  + S   K    V    P       + S V A     +   E  A     V VV  
Sbjct: 473 --EAEQVSHLQKSGVPVTDDLPKYTWFETLESEVVAFYGADKSFPEQIAPESGVVGVVLK 530

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           QTPFYAE+ GQ+ D G   G      +  V        +H  +VE+G LR   ++  ++D
Sbjct: 531 QTPFYAESEGQIADRGSLSGANGSFSVQQVLSYGGY-VLHIGVVEQGTLRLHDAVTCSVD 589

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           Y  R  ++ NH+ TH+++ AL  +L + V Q GS +    LRFD  H+K ++ A+L  IE
Sbjct: 590 YDYRLLIAPNHTLTHVMNWALRRVLQTEVDQKGSLVDDQKLRFDFNHTKAVSPAQLSEIE 649

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASG-AAALLGTK-YNDRVRVVSVEYEDGGVHSSALC 694
             VN+ +   L V T++   ++A       A+ G   Y    R           +S   C
Sbjct: 650 RLVNEKVHDALKVFTKVCPIDEARKICSLRAVFGEAGYPSNPR--------WMDYSVEFC 701

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTH+S+  +     IV E SI  GIRRI AITG RA   ++  ++    L+    +   
Sbjct: 702 GGTHLSNLAQAKFFAIVEEGSISKGIRRIVAITGDRANESIVLANQIDGMLSHARSLHGK 761

Query: 755 NVVGRVEEIW-----------------EEYRKLQLIHAKRKLQLNVEDLSCH-------- 789
            +   V E+                  EE +KL+      + +   + L           
Sbjct: 762 ELEAAVAELQQTIPTAVISVATKATFKEELKKLEKTMMAERKEQIAKQLESAIAEAEKVV 821

Query: 790 ----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               +  +   + + +  +DS     +M  +++        +  +   K A   +V  E 
Sbjct: 822 KEVKEKQEGGRVFYTVEGIDSSNASKLMQKIRELDSESSYFIFSVDTAKVAMYALVAKEK 881

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
               F+A       A V  GG GGG P  AQ    + +  + A A     LK
Sbjct: 882 ASKTFSAKTWISEVAAVC-GGKGGGSPMQAQGQSKDPSNVEAAFAKAEEILK 932


>gi|242798694|ref|XP_002483222.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218716567|gb|EED15988.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1002

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/969 (30%), Positives = 466/969 (48%), Gaps = 95/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R+ F+++F++ GH  +PSSS++P  DPTL+F N+GM  +K+IF G   P      
Sbjct: 53  TAERVRSEFIDYFKERGHTFVPSSSVVPHADPTLLFANAGMNQYKSIFLGTVDPQSDFAH 112

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK+ AI  +W+LLTK 
Sbjct: 113 LKRAVNSQKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKKEAITYSWELLTKV 172

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F LD  RLY+T ++         D EA ++W+   G+  D I+     DNFW M + GPC
Sbjct: 173 FGLDPSRLYVTYFEGNESGGLEPDLEAKEIWRN-VGVPEDHILPGNMKDNFWEMGDQGPC 231

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG
Sbjct: 232 GPCSEIHYDRI-GGRNAASLVNQDDPNVLEIWNNVFIQYNREADRSLRPLPNKHVDTGMG 290

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F  L +  +++          G +        +RV+ DH+R
Sbjct: 291 FERLVSVLQDKSSNYDTDVFMPLFRTIQEITGAPEYQGRFGAEDADGVDTAYRVVADHVR 350

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           + +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +P
Sbjct: 351 TLTFAISDGAYPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTLVEQMGVMFP 410

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           E+ + +  + E L  E+  F KTLDRG    +     +       L+G   ++LYDT G 
Sbjct: 411 EIKEKQAEVMEVLNEEEVSFSKTLDRGEKQFENYAQQAKSKGLNKLHGADVWRLYDTFGF 470

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL+ ID   F +     R +A+  S G      E +   + +      
Sbjct: 471 PVDLTQIMAEERGLS-IDEAEFEE----ARLKAKEASKGQKKAAAETVKLDVHDLG---- 521

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEV 513
                     K                 +  + SIVKAI      ++       G+++ V
Sbjct: 522 ----------KLDNMSDVPKTDDSSKFDSPRIESIVKAIYYSKNFIQSTADVPEGEQIGV 571

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T FYAE GGQ  DTG    DG         +   G  +H   ++ G L    S++ 
Sbjct: 572 ILDRTNFYAEQGGQENDTGIISIDGKAELEVGDVQSYGGYVLHTGFIKYGSLAVGDSVMC 631

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D + R+ +  NH+ TH+L+ AL  ILG  ++Q GS +  + LRFD +H   ++  EL 
Sbjct: 632 EFDDRRRQPIRNNHTGTHILNFALREILGDGINQKGSLVAAEKLRFDFSHKAAVSDKELD 691

Query: 634 SIEDNVNDIIAQNL-PVVTRIMNREDAIASGAAALLGTKYNDRVR-----------VVSV 681
            IE    + I QN       +        +G  A+ G  Y D VR           +  V
Sbjct: 692 QIERKSTEYIRQNCGVYSKEVPLATAREITGVRAVFGETYPDPVRVVSVGVEVEEILKDV 751

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH------L 735
           +       S   CGGTHVS +GEI  L I+ ES I  GIRRI A+TG  A          
Sbjct: 752 KDPRWNDISIEFCGGTHVSRSGEIRELVILEESGIAKGIRRIIAVTGDEALQAQLTAVEF 811

Query: 736 MGQDEKLK----------------------SLASFLKVSQGNVVGRV-EEIWEEYRKLQL 772
             + EKL+                      ++++  K    ++  R+ +++ ++ + LQ 
Sbjct: 812 EKRLEKLRTLEHGPAKEMEMKQVQLELNQLAISAVQKAKFRDLFARINKQVLDDQKALQK 871

Query: 773 IHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           +  K+   L        +  D   F++ + +  ++K +   ++ ++ K+    +  +   
Sbjct: 872 VELKKAQDLIKAYFGAEENKDRTTFVTKLPATSNAKVVSESINFIKSKMADKTVYFIAPD 931

Query: 832 -KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K +    V +   +   +  + A + +  + GG  GGR   A   G N +K D+ +
Sbjct: 932 PSGNKVAHGCHVAKAASELGLSPSEWANVVSGAV-GGKAGGRAPTAIGNGTNVDKVDEGV 990

Query: 890 AGVASFLKK 898
           A    +L+K
Sbjct: 991 ALATEYLQK 999


>gi|308183349|ref|YP_003927476.1| alanyl-tRNA synthetase [Helicobacter pylori PeCan4]
 gi|308065534|gb|ADO07426.1| alanyl-tRNA synthetase [Helicobacter pylori PeCan4]
          Length = 847

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/891 (36%), Positives = 481/891 (53%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLR 
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRH 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTECCAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + +A   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 467 --------------DFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGVLLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHEKLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKG-GGRGDFASAGGKDIENLQAALNLAKN 839


>gi|213966126|ref|ZP_03394313.1| alanyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213951224|gb|EEB62619.1| alanyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 886

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/910 (36%), Positives = 482/910 (52%), Gaps = 61/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F++ F K GH  +PS+SL+  +DP L+F N+GMVPFK  F G E P +   
Sbjct: 1   MQTHEIRNRFIQHFVKAGHTEVPSASLV-LDDPNLLFVNAGMVPFKPYFLGNETPDFSTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 60  TSIQKCVRTL----DIEEVGITTRHNTFFQMAGNFSFGNYFKEGAITHAWSLLTGAVEDG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +   +L++TVY +D+EA  +W +  G+  ++I R    DN+WSM   GPCGPCSEIF
Sbjct: 116 GFGIPAEKLWVTVYLDDDEAHDIWHEKVGVPEERIQRRGMADNYWSMGVPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFM+ E+       + +    LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GADGGPEADEDRYIEIWNLVFMENERGEGTGKDSFEILGPLPKKNIDTGMGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E++TG KY  N+  N   RVI DH R+   L+ D
Sbjct: 235 ERVAFLLQGVDNVYETDLLRPVIDEAEKLTGSKYSSNHQDNIRFRVIADHSRTGLMLMLD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY+LRR++RR +  ARLLG   P++  L+      M  +YPE+ +    I 
Sbjct: 295 GVTPSNSDRGYILRRLLRRIIRSARLLGANGPVLEKLIGIAAETMTPSYPEIAENWNRIR 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E++ F KTL  G  L +     +      +L+G  AF L+DTHG P+D+  ++  
Sbjct: 355 RVAVAEEKAFTKTLSAGEELFERAATKAKAEGKTVLSGHDAFTLHDTHGFPIDLTIEMAE 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  ID   F++ + EQR+RA+A S       T+   +        T F GYD L   
Sbjct: 415 EAGLT-IDREEFDREMAEQRARAKADSQAKKQSHTDLHVYREFIDEHPTSFTGYDRLAD- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+  G+    A  G ++EV+ D+TP YAEAGG
Sbjct: 473 ----------------------ESTILGIIADGQKQSFAAEGDEIEVILDRTPLYAEAGG 510

Query: 527 QLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G      G  + I DVQK  + +++H  IV  G     +S    +D Q R     
Sbjct: 511 QLADRGRIVTDSGAVVHINDVQKVGKKLWLHKGIVTAGEFTPGVSAEALVDEQWRHGARQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+ATHL+H AL  +LG  V+Q GS   P  LRFD  + + +T  +L+ IE   N+ +  
Sbjct: 571 AHTATHLIHGALRQVLGDTVTQAGSMNKPGYLRFDFKYGEQLTPEQLREIEQITNEAVDN 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T  M  E+A A+GA AL    Y D VRVV V    GG  S  LCGGTHVS + +I
Sbjct: 631 DWAVNTAEMPLEEAKATGAMALFNENYGDIVRVVEV----GGPFSIELCGGTHVSHSSQI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + ++ ESS+ +G+RRIEA +G  +  +L  +    + LA+  K     +  R+  + E
Sbjct: 687 GPVAVLGESSVGSGVRRIEAYSGMDSFRYLSTERLLAERLATEFKAPSAELPDRIAALAE 746

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKK 819
           + +  +   A  K    + +      S   I DV ++   +    + K+++S+ + L K+
Sbjct: 747 KLKAAEKQLADFKAGQLLANAASHLESARTIGDVTYLGLKLPDGTEMKDIRSLANDLAKR 806

Query: 820 IQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +     +I L+  +   K      V+++ ++R   A DL +L    +GG G GG+P MAQ
Sbjct: 807 LGDRPSVIALIS-NASGKVPFAASVSDEAVNRGIKAGDLVKLMGAEVGGKG-GGKPAMAQ 864

Query: 877 SGGPNGNKAD 886
             G + +  D
Sbjct: 865 GSGSDASGID 874


>gi|37903407|gb|AAP57355.1| Alanyl-tRNA synthase [Mus musculus]
          Length = 968

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/969 (32%), Positives = 476/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMNGFEE----ERRLAQLKSQGKGAGDEDLIMLDI-YAIEELRAKG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                 +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 478 LEATDDSPK----YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+ VN +I    PV T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHEGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 772

Query: 744 SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL++    +K       +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 773 SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|320103497|ref|YP_004179088.1| alanyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
 gi|319750779|gb|ADV62539.1| alanyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
          Length = 874

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/916 (34%), Positives = 476/916 (51%), Gaps = 67/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R ++L+FF   G  L PS  L+P +DPT++FT +GM  FK  F G   P ++  
Sbjct: 1   MTTDELRQSYLDFFVSKGCVLKPSDVLVPRDDPTVLFTPAGMNQFKREFMGLGDPTFKKA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D+DNVGRT  H TFFEMLGNFSFG YFK  AI  AW+ LTK   +D
Sbjct: 61  VTCQKCLRTG----DIDNVGRTAFHETFFEMLGNFSFGDYFKREAIHWAWEYLTKILKID 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIF 176
             RL +TVY +D+EAF +W    GL + +I R+   DNFW     S+   G CGPCSEIF
Sbjct: 117 PDRLSVTVYLDDDEAFAIWNNEIGLPSSRITRMDEADNFWPASAPSLGPNGVCGPCSEIF 176

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           F                G + +EIWNLVF QF +   ++   LP  +IDTGMGLER A  
Sbjct: 177 FH-------------GNGPKEVEIWNLVFTQFNRVGFRQLEPLPHKNIDTGMGLERAAAC 223

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ     +  DLF+ ++    +V    Y+    + V  R + DH R+ +F I + + P+N
Sbjct: 224 LQGVPTVFMTDLFRPIVARVAEVLDQPYQADSPDGVRMRRMADHARALTFCIHENVRPSN 283

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           E +GYVLRR++RRA+     LG  EP +  L P +  +M   YPE++ +   I+  +R E
Sbjct: 284 EKQGYVLRRLLRRAVLDGYHLGRREPFLYQLPPIVAQQMSGPYPEVVGSVPRIQAVIREE 343

Query: 355 DERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E F + L+ G+ LL+     +     ++L+G  AFKL+ THG+P+++++ +   R L  
Sbjct: 344 EEDFLRNLEHGMKLLEDTFRKTKAAGSDVLDGSTAFKLHATHGIPIEVVESLAAERELT- 402

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EE    +R  S          +    K     T+F+GY+  R        
Sbjct: 403 VDRPGFEAAVEEHARISRGTSEAAAVFEVGPLDELKKAHPQGTRFLGYETTR-------- 454

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ----KVEVVFDQTPFYAEAGGQL 528
                           +  V  ++Q   +V+   +G     +  +V DQ+PFY E+GGQ+
Sbjct: 455 ---------------ATGKVIGLIQGPALVDSVAAGTGDHAQAAIVLDQSPFYGESGGQV 499

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG   G    L +    +K     +H   VE G +    ++   +D + R  +   HS
Sbjct: 500 GDTGRLTGPDGFLFLVTDTQKKNDFLLHLGRVEHGAIVPGATVEAEVDAERREAIRRAHS 559

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLHHAL   LG H  Q GS + PD LRFD  + + +    LK+IE  VN+++  + P
Sbjct: 560 ATHLLHHALHKHLGEHAQQAGSKVEPDRLRFDFANPEAVGRDRLKAIEATVNNLVLGDAP 619

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +   IM  + A   GA AL G KY + VRVV++     G +S  LCGGTH+    +I + 
Sbjct: 620 ITWTIMPLDQARKLGAMALFGEKYPENVRVVTM-----GDYSRELCGGTHLDHVSQIGVF 674

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SE S+ AG RRI A+TG+ A  +L  +D  L+ +A+ LKV       RV  + EE +
Sbjct: 675 AILSEESVAAGTRRITALTGRAALDYLKERDAVLEEIAATLKVPVAQAPARVAALLEEVK 734

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L+    +RK    +  +        ++  V  ++ +I     +E++ + D ++KK    
Sbjct: 735 TLKKQATQRKSAQTLGSIDSFLNEAVEVDGVQLVARVIDGGTVEEMRQLCDVMRKKAGER 794

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + +L+G   E K +++   T DL+   + NA    ++ A ++GGGG GG+P MA +GG  
Sbjct: 795 LAILLGSVVEGKVNLVAAFTPDLVAQRKANAGQWLKILAPIVGGGG-GGKPEMATAGGKL 853

Query: 882 GNKADQAIAGVASFLK 897
            +K  + +      L+
Sbjct: 854 PDKLPEVVRRAPETLR 869


>gi|301791808|ref|XP_002930871.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Ailuropoda
           melanoleuca]
          Length = 968

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/969 (31%), Positives = 467/969 (48%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPLERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYSGKVGADDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGDDLIMLDIYAIEELRE-KG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                       + V A+ +    VEE  +GQ+  VV D+T 
Sbjct: 478 LEATDDSPK----YNYHSDSSGSYAFESTVATVMALRRDKMFVEEVCTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G LR    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVEDNSEDKTEFTVKNAQVRGGYVLHIGTIYGSLRVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N +I    PV T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       +VSE +I  GIRRI A+TG  A+  L   +    
Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVLVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKN 772

Query: 744 SLASFL-KVSQGNVVGR--------------------------------VEEIWEEYRKL 770
           SL+    KV    V  +                                +++I ++  + 
Sbjct: 773 SLSIMEAKVKAQTVPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKIMDDLDRA 832

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
                ++++    + L          +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +   ASF +
Sbjct: 952 LQLAASFAQ 960


>gi|315604258|ref|ZP_07879324.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313964|gb|EFU62015.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 901

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/933 (33%), Positives = 486/933 (52%), Gaps = 71/933 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IRT +L++F   GH + PS SLI    P+++FT +GMVPF     G E   +   
Sbjct: 1   MRTSEIRTRWLDYFASKGHHVAPSVSLISPE-PSILFTVAGMVPFIPYILGTESAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+DNVG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSVQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAIDYAWELLTTPQARG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T++++DE +F  W K  G+  +++ R+   +  WS  + GP G C EI 
Sbjct: 116 GYGLDGDRLWMTIWEKDEVSFNHWTKTIGVDPERVQRLPFEEISWSTGQPGPAGACCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGL 230
           +D+G    P G P     G+R++EIWNLVF +F +   + R       L K +IDTG GL
Sbjct: 176 YDRGPAYGPDGGPIVDVAGDRFLEIWNLVFDEFVRGEGEGRDFELVGTLDKTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279
           ER+A ++Q+K N Y+ID    +I+A+++++G  Y             ++ V  RV+ DH+
Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIEAAQEMSGKTYGLGAAGPNAGGAYDDDVRMRVVADHV 295

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS+  LI+DG+ P N+GRGYVLRR++RRA+   RLLG  +  +  LL A    M  +YPE
Sbjct: 296 RSALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVEDAALPTLLTASKNVMSLSYPE 355

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGL 396
           L      I++   +E++ F +TL  G  +LD  ++         +++G  AF L+DT+G 
Sbjct: 356 LDSNWETIQDVAYAEEDAFRRTLSAGTTILDAAVASAKETTGAPVISGASAFSLHDTYGF 415

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--YGA 454
           P+D+  ++   +G   +D   F   + EQ+ RARA +    +G T+   F   EK   G 
Sbjct: 416 PIDLTLEMAAEQG-VAVDEEGFRSLMAEQKERARADARSKKTGHTDVRVFHEIEKQMGGG 474

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           + F+GY                             + V+A++  G     A +  +VEV+
Sbjct: 475 STFLGYTE-----------------------EAADATVQALLVDGASAPAASAPAEVEVI 511

Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+TPFYAE GGQL D G   +  G  +++ DVQ    G+ VH   +  G +        
Sbjct: 512 LDRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGTMSVGEKAYA 571

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   R  ++  H+ATH+++  L +++    +Q GS  +P  LRFD  HS  + +++L 
Sbjct: 572 QIDGARRLAIARAHTATHMVYAGLRSVVSKDATQAGSENSPSRLRFDFRHSSAVDASQLG 631

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE  VN+ +A++L V T  M+ ++A A GA AL G KY  RVRVV++           L
Sbjct: 632 DIEALVNEKLAEDLTVTTEEMSLDEAKAQGAIALFGEKYGSRVRVVTIGD----GFDREL 687

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHV +TG I  + ++ E SI +G+RRI+A+ G  A      +   +  L+  +    
Sbjct: 688 CGGTHVPTTGHIGRITLLGEGSIGSGVRRIDALVGDGAYEFQAKEHALVAQLSHLVGGRA 747

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVD-SK 807
             +  R+E +  + R  +    K + +  +        S   +  VN +  ++  +  + 
Sbjct: 748 EELPERIENLLAKLRDSEKELEKVRTEQALSRGSELAASARAVGAVNLVGAVVGAMPSAD 807

Query: 808 ELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864
            L+++   ++ ++ +  G ++ +G     K S+++   E   +    A  L R   K +G
Sbjct: 808 ALRTLALDVRDRLGNERGAVVALGGIVAGKPSLVVATNEAAREHSIKAGALVRAVGKHMG 867

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGG GGR  +AQ GG      + AI  +   ++
Sbjct: 868 GGG-GGRDDVAQGGGTKPEGLEAAIDAIRREIE 899


>gi|251773418|gb|EES53967.1| alanyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
          Length = 884

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/874 (38%), Positives = 476/874 (54%), Gaps = 45/874 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR +F  FF+  GH  +PSSSLIP  DPTL+FTN+GMVPFK+ F G E P     
Sbjct: 1   MDSLRIRNSFHGFFEGVGHRRVPSSSLIPPGDPTLLFTNAGMVPFKDAFLGTEPPPAPRC 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++Q+CVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI  AW+ LTK   L 
Sbjct: 61  VSIQRCVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAIAFAWEYLTKTLGLS 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L++TV+ +D+EA  LW+ ++G+   +I+R+   DNFW M  TGPCGPCSEI  DQG 
Sbjct: 121 PSVLWVTVFTDDDEAASLWQSVAGVDPSRIVRLGEKDNFWQMGNTGPCGPCSEILVDQGS 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWNLVFMQ+++ +      LP+ SIDTGMGLER+A+VLQ 
Sbjct: 181 AFSCGRPTCAVGCDCDRYLEIWNLVFMQYDRNDAGILTPLPRPSIDTGMGLERLASVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
             +N++ DLF  L++A  + T + Y   +G     +RVI DH+R+S+FL+ +G++P+NEG
Sbjct: 241 SQSNFETDLFLPLMEAIGKKTRIPYGRGQGEKDFAYRVIADHVRASTFLVWEGLVPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR +RRAM ++  L    P +  L       M + YPEL      +   L SE+E
Sbjct: 301 RGYVLRRFIRRAMQFSLDLALPTPFLPDLSRRFAELMAAPYPELAAGMDRVVTVLASEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF KTL+ GL L+  +     +    +L G+  F LYDTHGLP+D++ D     G+  +D
Sbjct: 361 RFMKTLETGLPLVQELARSARERGETVLTGEELFWLYDTHGLPVDVVGDWAAPLGVT-LD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   + EQ+ + R       +G+               +F GY+ L           
Sbjct: 420 TEGFAVRMGEQKEQGRRSW----TGSRASFPLPASRLSSPVRFEGYERLESP-------- 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  +      V+    G+++  V D +PFY E GGQ+GD G  
Sbjct: 468 ---------------ARLLLLASGESEVQSVREGEEIWAVTDVSPFYPEGGGQVGDQGRL 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  G  + I+   +   G       V  G++    ++ L +D   R    ++H+ATHLLH
Sbjct: 513 VAPGGIVSISGAYRPYPGWIALRGKVLSGVVTQGETVQLQVDRSLRLGARVHHTATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS + PD LRFD +H  PIT  +++ IE  VN  I +  PV     
Sbjct: 573 AALRKVLGSHVRQAGSLVLPDRLRFDFSHGAPITDGQIEEIEGMVNRWIGEGAPVEISEK 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N+ DA+ASGA A    KY DRVRVV +        S  LCGGTH  ST EI   +I+SES
Sbjct: 633 NKADALASGAMAFFDEKYGDRVRVVEIPG-----MSVELCGGTHALSTSEIGSFFILSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG RRIEA+ G  A     G   +L  +A  LKVS G ++ R+     E  +++   
Sbjct: 688 GVAAGTRRIEAVAGAAATRTAAGWRAELHRIAGDLKVSPGRILDRIAAEKREREEIEKEL 747

Query: 775 AKRKLQ---LNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +   L  + L      + +V  +  ++   D  +L+  MD L+ +I SG ++L G
Sbjct: 748 SRSKSRLFDLETQSLLDESMMVGEVRILVAVVESRDLADLRLRMDVLKGRIPSGAVILAG 807

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            + + +  +L   T DL   F      R  A+ L
Sbjct: 808 KAGDDRVLLLGWATPDLEKTFPVNTWVRSMAQTL 841


>gi|126305114|ref|XP_001362507.1| PREDICTED: similar to Alanyl-tRNA synthetase [Monodelphis
           domestica]
          Length = 968

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/971 (32%), Positives = 469/971 (48%), Gaps = 96/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRRRFIDFFKRNQHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPAHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LNRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPVDRLYVTYFGGNEAAGLEPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGDRD-AAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++           G        + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARQYTGCVGADDVDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L         L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNAKRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +           
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDHIMLDIYAI-------- 470

Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            + LR       D                     + VKA+ ++   V+E  +GQ+  VV 
Sbjct: 471 -EELRIKGLQVTDDSLKYNYQSDSSGTYEFENPVATVKALRREKMFVDEVSTGQECGVVL 529

Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           D+T FYAE GGQ+ D G  +        + + T    +  G +V H     G LR    +
Sbjct: 530 DKTCFYAEQGGQIYDEGYLVKEDDSSEDKTEFTVKDAQVRGGYVLHIGTVYGSLRVGDRV 589

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ +
Sbjct: 590 RLYIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQ 648

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682
           L+  E   N +IA   PV  +           G  A+    Y D VRVVS+         
Sbjct: 649 LRETETIANGMIAAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVAKLLD 708

Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                 G + S   CGGTH+ ++     L IVSE +I  GIRR+ A+TG  A+  L   D
Sbjct: 709 DPSGPAGSLTSVEFCGGTHLQNSSHAGALVIVSEEAIAKGIRRVVAVTGVEAQKALRKAD 768

Query: 740 EK---LKSLASFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVED 785
                L  L + +K       ++   + +  E        +++K +L    + L+  ++D
Sbjct: 769 SLKSSLSELETKVKAQTAPNKDIQREISDFGELLATTVVPQWQKDELRENLKALKKVMDD 828

Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           L     ADV                     +  + S   +K L   +   +        M
Sbjct: 829 LDRANKADVQKRVLEKTRQLIESHPNQPLVIMEMESGASAKALNEALKLFKTHSPETSAM 888

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L  +  E  K   L  V ++  ++   A +  +  +  L  G GGG+   AQ+ G N   
Sbjct: 889 LFTVDSEANKIICLCQVPQNAANKGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGC 947

Query: 885 ADQAIAGVASF 895
             +A++   SF
Sbjct: 948 LQEALSLATSF 958


>gi|257068797|ref|YP_003155052.1| alanyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256559615|gb|ACU85462.1| alanyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
          Length = 902

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/931 (34%), Positives = 508/931 (54%), Gaps = 71/931 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L FF K  HE++PS+SL+  +DP+++FT +GMVPF     G E   Y   
Sbjct: 1   MRTSEIHRRWLAFFAKKDHEIVPSASLV-SSDPSILFTIAGMVPFIPYIVGTETAPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND++NVGRT RH TFF+M GNFSFG YFK+ AI  +W+ LT      
Sbjct: 60  ASVQKCIRT----NDIENVGRTTRHGTFFQMAGNFSFGDYFKQGAIDYSWEFLTTPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL+ TV+++DEE+++   ++ GL   +++R+   + FW   + GP GPC E  
Sbjct: 116 GLGFDPERLWFTVWEQDEESYRHVTEVIGLDPQRVVRLPREEIFWDTGQPGPAGPCGEWH 175

Query: 177 FDQGECIPGGL--------PGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KM 222
           FD+G               PG  +  +RYIEIWNLVF Q+ +  +      P      + 
Sbjct: 176 FDRGPEHGPEAVTGTVPEWPGDEQAEDRYIEIWNLVFDQYLR-GEGSGKDYPLLGELEQK 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLR 280
           SIDTG+G+ER+A +LQ K N Y+ID    +I+ ++++TG +Y     + V+ R+I DH+R
Sbjct: 235 SIDTGLGVERVAFLLQGKQNMYEIDQIFPVIEKAQELTGRRYGAVEEDDVHLRIIGDHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S+  L+ADG+ P NEGRGYVLRR++RRA+   RLLGYT+P M  LLP   + M  +YPEL
Sbjct: 295 SALMLVADGVRPGNEGRGYVLRRLIRRAVRSMRLLGYTQPSMPQLLPISHSLMVESYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPL 398
                 I E + +E+E F +TL+ G  + +GV+         +L G+ AF+L+DT+G P+
Sbjct: 355 EADFARISEIVHAEEEAFRRTLETGTTIFEGVVGAVKEEGGRVLPGEDAFRLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQ 456
           D+  ++    GL  +D  +F  A++EQR RARA +    +G T+   +S  L ++ G   
Sbjct: 415 DLTMEMASEVGL-QVDAEAFRSAMQEQRERARADAAAKKAGHTDTALYSRLLSQRGGEVP 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F+GY                         + V++ V++++  G++V+   +  +VEVV  
Sbjct: 474 FVGYTE-----------------------DTVATTVESVLVDGQLVDTVHAPAQVEVVLA 510

Query: 517 QTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            TPFYAEAGGQL D G  ++  G  +++ DVQK   G+ VH   +  G L    S + TI
Sbjct: 511 TTPFYAEAGGQLADQGQISLTGGGLIEVDDVQKPVRGLIVHRGRLLEGELAQGASAIATI 570

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  ++  H+ATH++H +L   LG   +Q GS  +P  +RFD  + + +  + L+ I
Sbjct: 571 DVARRGAIARAHTATHMVHESLREELGGSATQAGSENSPGRMRFDFRYGQAVPKSVLEQI 630

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN ++   L V  + M+ ++A A GA AL G KY D VRVVS+    GG  S  LCG
Sbjct: 631 EGRVNTLLQDELTVTDQQMSLDEAKALGAQALFGEKYGDIVRVVSI----GGDWSRELCG 686

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QG 754
           GTHV STG I  + ++ E+SI +G+RR++A+ G  A  H   +   +  L+  LKV    
Sbjct: 687 GTHVDSTGAIGTVQLMGEASIGSGVRRVDALVGLSAYRHQAKEHALVSQLSELLKVGAAE 746

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKE 808
            +  RV  + +  + ++   A  + Q    +      S   +A V  ++H     + + +
Sbjct: 747 ELPERVRALTQRMKDMEKQLAALRGQQLQAEAGKLVESASDVAGVRLIAHDAGEGIAAGD 806

Query: 809 LKSVMDALQKKIQSGIIMLVGIS--KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
           L+++   L+ ++   + + + ++     +A+++I       +R   A  + R +A+ + G
Sbjct: 807 LRTLALDLRSRLGEDVPVTIAVAGHDGGRAALVIATNATARERGLAAGTMLRGAAEAM-G 865

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P +AQ GG    +   A+  V   +
Sbjct: 866 GRGGGKPDLAQGGGGEPARIPAALTAVREAI 896


>gi|256832583|ref|YP_003161310.1| alanyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
 gi|256686114|gb|ACV09007.1| alanyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
          Length = 895

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/920 (35%), Positives = 498/920 (54%), Gaps = 64/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L+FF+   H ++PS+SLI   DP+++FT +GMVPF     G++K  +   
Sbjct: 1   MRTAEIRHRWLQFFESRDHHVVPSASLISP-DPSVLFTIAGMVPFIPYMLGEQKAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R G    D+D VG+T RH TFF+M GNFSFG YFK  AI  AW+ +T      
Sbjct: 60  TSVQKCIRTG----DIDEVGKTTRHGTFFQMNGNFSFGDYFKREAITFAWEFITGSEESG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   +++TVY +D+EA  LW+ ++GL  ++I R    DNFW   + GP GPCSEI+
Sbjct: 116 CLGFDPELIWVTVYHDDDEAASLWRDVAGLPEERIQRRGKKDNFWHTGQPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQF------EQQNKQERFILPKMSIDTGMGL 230
            D+G    G   G   + +RY+EIWNLVFMQ+       +++      L + +IDTGMGL
Sbjct: 176 VDRGPQY-GAEGGPVVDEDRYLEIWNLVFMQYSLENVTSKESFDIVGPLRQHNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A + Q   N Y+ID    +I+A+E+++G  Y  NN  +   RV+ DH+RSS  LI D
Sbjct: 235 ERVALLKQGVNNMYEIDEVYPVIEAAEKLSGRTYGENNDDDVRFRVVADHIRSSLMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRR++RR++   RLLG TEP +  L+ A    M ++YP L +    I 
Sbjct: 295 GVRPSNEGRGYVLRRLLRRSIRAMRLLGVTEPAIPALITASKEAMKASYPYLEENFATIL 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDI 404
            T  +E++ F +TL++GL +LD  +S           L G+ AF L+DT+G P+D+  ++
Sbjct: 355 ATASTEEDVFRRTLNQGLTILDAAVSDAKSQGGSSAALTGEQAFTLHDTYGFPIDLTLEV 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKY-GATQFIGYDL 462
              +G   +D  +F   ++EQR RARA +L    G  +  ++ SL        +F+GY  
Sbjct: 415 AAEQG-VSVDETAFRSLMQEQRDRARADALAKKQGHGDLGVYQSLLASMAAPVEFLGYTD 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
            +                         + V A++  G+ V    +   VE+V D+TPFYA
Sbjct: 474 AQAP-----------------------AKVTALLVDGQPVATVTAPADVEIVLDRTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQL D G    +    + I DVQ    G+ VH   +  G L    ++V  ID   RR
Sbjct: 511 EKGGQLADHGRVYSEQGATVDIADVQSPVSGLSVHRGALVDGTLSVSDAVVAEIDVVRRR 570

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           Q+S  H+ATH++H AL   LG+  +Q GS  +P+ +RFD   S+ + ++ L  IE  VND
Sbjct: 571 QISQAHTATHMIHKALQETLGADSTQAGSENSPNRIRFDFRQSQAVPTSALAEIEGRVND 630

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            + +NL V   + + +DA A GA AL G KY DRVRVVS+    GG  S  LC GTHV +
Sbjct: 631 QLRENLEVTDIVTSLDDARAMGAMALFGEKYGDRVRVVSI----GGDWSRELCAGTHVPT 686

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           +GE+ ++ I+ E+SI +G+RR++A+ G  A  H   +   +  L+  L V    +  RVE
Sbjct: 687 SGELGIVTILGEASIGSGVRRVDALVGAGAYGHHARERALVSQLSGLLNVRSEELPTRVE 746

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV-DSKELKSVMDA 815
            +  + R  +      +    +        S   +  V  +++   EV     L++++  
Sbjct: 747 SLVGKLRDAEKELTTLRQAQLLARAGEIASSAATVGAVRVVTYDAGEVATPDALRTLVLD 806

Query: 816 LQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
           ++ ++      ++ + G+SK +   V+            A  L R +A VLGGGG GG+ 
Sbjct: 807 VRGRLGDSQGSVVAVAGVSKGRPVVVIATNASAREAGVKAGALVRTAAGVLGGGG-GGKD 865

Query: 873 HMAQSGGPNGNKADQAIAGV 892
            +AQ GG N     +A+A V
Sbjct: 866 DLAQGGGQNPTAITEALAAV 885


>gi|330752589|emb|CBL87535.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 873

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/919 (35%), Positives = 485/919 (52%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL+FF+   HE++ S+ ++  +DPTLMFTN+GM PFK  F G  +P  + 
Sbjct: 1   MKSF-DIRKQFLDFFESKAHEIVSSAPMVIKDDPTLMFTNAGMNPFKEFFLGFAQPTSKR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK+ AI+ AW+LL   + +
Sbjct: 60  LADTQKCLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLIDIYKI 119

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D  RLY+T+++         D EA+ LWK I  L  D+I+  +  DNFW M + GPCGPC
Sbjct: 120 DAERLYVTIFEGSLGEKLEKDTEAYNLWKAI--LPEDRILLGSKKDNFWEMGDQGPCGPC 177

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IE+WNLVF++F +        LPK  IDTGM
Sbjct: 178 SEIHIDTRPKTEWEKTPGSALVNKDHPQVIELWNLVFIEFNRNADGGLEKLPKKHIDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ K +NYD D+F  +I   E++T   Y  +    V  RVI DH+R+  F I
Sbjct: 238 GFERLCMVLQGKISNYDTDVFTPIINEIEKITKYNYGVSEKSDVAIRVIADHIRTVFFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   +P +  L+  +  ++   +PEL + K 
Sbjct: 298 ADGQLPSNIGAGYVIRRILRRAIRYGFTFLDQKKPFIHLLVEIISKQLSDIFPELKKEKK 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           L +  ++ E+E F KTLD+GLVLL+ V+ +L   +I  GD  F+LYDT G P D+   I 
Sbjct: 358 LAQNVIKKEEESFLKTLDQGLVLLENVIKNLKAKKI-PGDKVFELYDTFGFPFDLTTLIA 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RGL  ID   F +A+ +Q+SR+R  +L     +    W  +KE     +F+GYD L  
Sbjct: 417 NERGLE-IDKEGFEKAMGKQKSRSRGATL-----SKVGDWIVIKESKKE-EFVGYDTLES 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  +   RK+                                G   ++ FD+TPFY E G
Sbjct: 470 NILITRYRKMNTN---------------------------KDGDFYQLTFDKTPFYPEGG 502

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G    +   +      KK   + +HH       +     +   ++ + R   S 
Sbjct: 503 GQVGDQGYLELENGEILNITDTKKENNLVIHHCKSLPKKMDISFKVF--VNPELRLNTSS 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHL+H AL  +LG+HV Q GS +     RFD +H   + + +LK++E  VN+ I +
Sbjct: 561 NHTATHLVHQALRFVLGNHVQQKGSMVNSKMFRFDFSHFSKLKNEQLKNVEKFVNERILE 620

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +P+   R +  + A+  GA AL G KY   VR +          S  LCGGTHV +T +
Sbjct: 621 KIPLEEQREIPHDKALEEGAIALFGEKYGKNVRTIRFG------KSIELCGGTHVKNTSD 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I+SES++ +G+RRIEA+TG   +++   Q   LK++   LK SQ  V   +  + 
Sbjct: 675 IWYFKIISESAVASGVRRIEAVTGSAVKNYFENQTTILKNINQLLKQSQDPV-KAILNLQ 733

Query: 765 EEYRKLQLI---HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            E   L+      +K K +    +L      I+ VNF++  I  +D++ +K +   + K+
Sbjct: 734 SENIFLKKEISALSKLKSKTLKSELLKEIKIISGVNFLAKEIE-IDAQGMKDLSFEIGKE 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             + II++ G  K  K  +   +++ L+  D  +A  + +   + + GGG GG+   A +
Sbjct: 793 F-NKIILVFGSRKTGKPLISCYISKQLVNEDGRDASQIIKYLGQYIDGGG-GGQSFYATA 850

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG      + A+      L
Sbjct: 851 GGKKIEGINLALDEAKKIL 869


>gi|262189584|ref|ZP_06047986.1| alanyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
 gi|262034534|gb|EEY52872.1| alanyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
          Length = 781

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/809 (41%), Positives = 470/809 (58%), Gaps = 69/809 (8%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151
           MLGNFSFG YFKE AIQ AW+ LT    L + RL +TVY+ D+EAF +W K  G+ AD+I
Sbjct: 1   MLGNFSFGDYFKEDAIQYAWEFLTDVLQLPKERLLVTVYETDDEAFDIWNKKVGIPADRI 60

Query: 152 IRITTN--------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWN 202
           IRI           DNFW M +TGPCGPC+EIF+D GE I GG PGS  E+G+R+IEIWN
Sbjct: 61  IRIGDKKGGKKFDSDNFWQMGDTGPCGPCTEIFYDHGEHIWGGPPGSPEEDGDRFIEIWN 120

Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262
            VFMQF +        LPK S+DTGMG+ER++ ++Q   +NY+ID+F+ LI+A+    G 
Sbjct: 121 NVFMQFNRHADGTMEPLPKPSVDTGMGIERISAIMQGVHSNYEIDVFQTLIKAAADAIG- 179

Query: 263 KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
            Y+     + RV+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ +   LG      
Sbjct: 180 -YQDLTNQSLRVVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAFF 238

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
             L+  L   MG+A  EL + + L+E+ LR E+E FG+TLDRG+ +L+  L  L   ++L
Sbjct: 239 HKLVGPLAEVMGTAGAELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQLS-GQVL 297

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           +G+  FKLYDT+G P D+  D+   RG + ID   F QA+EEQR RAR        G   
Sbjct: 298 DGETVFKLYDTYGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRAREA------GQFG 350

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
             + SL +    T+F GY   RG                        S+V+ +  +G  V
Sbjct: 351 TDYNSLIKSATNTEFCGYTASRG-----------------------QSVVREMFVEGAEV 387

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
               +G K  +V D TPFYAE+GGQ GDTG    D     + D QK       HH ++ +
Sbjct: 388 STLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHVEDTQKLGN-AIAHHGVLAQ 446

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           G+L T   +   +D + R  +S+NHSATHLLH AL  +LG HV+Q GS +  + LRFD +
Sbjct: 447 GVLATGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGEHVAQKGSLVRAETLRFDFS 506

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
           H + +T AE+K +E  VN  I  N  + T IMN ++A A GA AL G KY+D+VRV+S+ 
Sbjct: 507 HLEAMTPAEIKEVERLVNQEIRHNHNIETNIMNIDEAKAKGAMALFGEKYDDQVRVLSM- 565

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
               G  S+ LCGG H S+TG+I L  I+SE  I AGIRRIEA+TG+ A  +L  Q    
Sbjct: 566 ----GDFSTELCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDYLDAQQA-- 619

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFM 797
                           +V E+  + + L+    + K +L  ++ +       +IA VN +
Sbjct: 620 ------------QHDAKVSEMAAKAKLLEKEIQQLKDKLAAKESAGLINQVKQIAGVNVL 667

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
              ++  D+K L+ ++D L+ ++ SGIIML  ++ E K  ++  VT DL ++  A +L  
Sbjct: 668 VAQLNGADNKALRGMVDDLKNQLSSGIIMLGNVA-EGKVGLIAGVTNDLTNKVKAGELVN 726

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           + A  + GG GGGRP MAQ+GG + +   
Sbjct: 727 MVALQV-GGKGGGRPDMAQAGGTDAHALP 754


>gi|254571161|ref|XP_002492690.1| Cytoplasmic alanyl-tRNA synthetase [Pichia pastoris GS115]
 gi|238032488|emb|CAY70511.1| Cytoplasmic alanyl-tRNA synthetase [Pichia pastoris GS115]
          Length = 981

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/971 (31%), Positives = 485/971 (49%), Gaps = 100/971 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + +R+TF +FF+   H  +PSSS+IP +DPTL+FTN+GM  +K IF G   P      
Sbjct: 32  TANKVRSTFFDFFKSKDHTYVPSSSVIPYDDPTLLFTNAGMNQYKPIFLGTVDPSSDFAT 91

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +  T  QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI   W+LLTK 
Sbjct: 92  LKRATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGYGWELLTKV 151

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L++ RLY++ +        + D EA + WK + G++ D I+  +  DNFW M + GPC
Sbjct: 152 YGLEKERLYVSYFGGDAGLGLEPDLEAKEYWKAL-GVAEDHILPGSVEDNFWEMGDQGPC 210

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN+VF+QF ++       LP   IDTGMG
Sbjct: 211 GPCSEIHYDRI-GGRNAASLVNQDDPDVLEIWNIVFIQFNREADGSLKPLPSKHIDTGMG 269

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ   +NYD D+F  L    +++TG++    +            +RV+ DH+R
Sbjct: 270 FERLVSILQNVRSNYDTDVFDPLFTKIQEITGVRPYSGHFGKEDMDGIDTAYRVLADHVR 329

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L PAL  ++   +P
Sbjct: 330 TLTFSLADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGKFFSQLAPALIEQVKETFP 389

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+ +    I E L  E+  F +TLDRG  L +   +++    ++ L G   ++LYDT+G 
Sbjct: 390 EVDKNFDTIAEILDEEEASFSRTLDRGERLFEQYAIIASKTPEQTLAGRDVWRLYDTYGF 449

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL   D   F  A E  R  ++ +    G    +     L E    ++
Sbjct: 450 PVDLTRLMAEETGLKIDD-EGFEIAKEASREASKGNGKTQGKELVKLDVHVLGELEKNSE 508

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513
                                       T  + + + AI    E+++   E    Q++ +
Sbjct: 509 -----------------VPKTDDSYKYGTKNIEASIVAIYNGKELIQSTSEVADDQQLGI 551

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+TPFYAE GGQ+ DTG  + DG+     +  +   G  +H   VE G+L     ++ 
Sbjct: 552 LLDKTPFYAEQGGQIYDTGKIVIDGVAEFNVENVQSYAGYVLHTGYVEEGVLSVSDKIIA 611

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H K +T +EL+
Sbjct: 612 GYDELRRWPIKNNHTGTHILNFALRDVLGDDVEQKGSLVAPEKLRFDFSHKKALTLSELQ 671

Query: 634 SIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682
            +ED  N++I +N+PV    +        +G  A+ G  Y D VRVVS+           
Sbjct: 672 KVEDISNEVIKKNVPVFASDVTLAVGKEINGLRAVFGETYPDPVRVVSIGVPVEELVKNP 731

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQ 738
              +    S   CGGTHV+ TG+I    I+ ES I  GIRRI A+T   A         +
Sbjct: 732 SNAEWHNASIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTSTEAHTVQRIAREK 791

Query: 739 DEKLKSLASF-----------------------------LKVSQGNVVGRVEEIWEEYRK 769
           +++L ++A                               LK    N+   V+   +E + 
Sbjct: 792 NDQLDAIAKMSFGEAKEKKLKEFNVALGKLQISVLAKNDLKTKFTNIEKVVK---DELKV 848

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV- 828
            Q   +K+ L    +  + H+ +   F++H+    ++K L      ++K+I    + L+ 
Sbjct: 849 RQKAESKKTLDTVKDYFNEHEDSPF-FVAHVPVSSNAKLLTEAFSYIKKEIPDKSLYLIV 907

Query: 829 GISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G   E K +    V+++ L     A ++  ++++ + GG  GG+ ++ Q  G N    ++
Sbjct: 908 GNESEPKIAQGCYVSDNALSKGVVASEVTNVASEFI-GGKAGGKGNICQGVGTNPEGINK 966

Query: 888 AIAGVASFLKK 898
           AI  V   LK+
Sbjct: 967 AIEAVTKILKE 977


>gi|146318890|ref|YP_001198602.1| alanyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|253751968|ref|YP_003025109.1| alanyl-tRNA synthetase [Streptococcus suis SC84]
 gi|253753793|ref|YP_003026934.1| alanyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|253755331|ref|YP_003028471.1| alanyl-tRNA synthetase [Streptococcus suis BM407]
 gi|205830232|sp|A4VVR3|SYA_STRSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145689696|gb|ABP90202.1| Alanyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|251816257|emb|CAZ51885.1| alanyl-tRNA synthetase [Streptococcus suis SC84]
 gi|251817795|emb|CAZ55547.1| alanyl-tRNA synthetase [Streptococcus suis BM407]
 gi|251820039|emb|CAR46252.1| alanyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|319758333|gb|ADV70275.1| alanyl-tRNA synthetase [Streptococcus suis JS14]
          Length = 872

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/918 (34%), Positives = 490/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+G     E I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +T+  G    + ++  L  +    ++G   FKLYDT+G  +++ +++ 
Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +DI  F  A++EQ+ RARA  +  GS   +    +L      + F+       
Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLAAITEESTFV------- 462

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + + +  IV      E    GQ   +VFDQTPFYAE G
Sbjct: 463 -----------------YGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G        +  T +  +KA      H +     +    +  L I+ + R+ + 
Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  +VE +
Sbjct: 680 IGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            ++ R LQ  +A  K +           +      + +++  +   D+  L++  D  ++
Sbjct: 740 AQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   + D     +A +L ++ A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKSSD----VHAGNLIKVLAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +     +  VA  L
Sbjct: 855 GSDASAIQTLLNSVADNL 872


>gi|17506981|ref|NP_491281.1| Alanyl tRNA Synthetase family member (ars-2) [Caenorhabditis
           elegans]
 gi|74955985|sp|O01541|SYAC_CAEEL RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=AlaRS A; AltName: Full=Alanine--tRNA ligase
 gi|1938531|gb|AAB52339.1| Alanyl trna synthetase protein 2 [Caenorhabditis elegans]
          Length = 968

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/978 (28%), Positives = 453/978 (46%), Gaps = 99/978 (10%)

Query: 1   MS--NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M     S +R+TF+ FF +K  H  + SSS+IP +DPTL+F N+GM  FK +F G   P 
Sbjct: 1   MKHLTASEVRSTFINFFREKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPN 60

Query: 58  Y-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWD 112
                 +     QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG YFK+  I  AW+
Sbjct: 61  SDLAKLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWE 120

Query: 113 LLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           LLT  + +   RLY++V+  DE        EA  +W+   G+  ++I+     DNFW M 
Sbjct: 121 LLTTVYGIPAERLYVSVFGGDEANGVPADSEARDIWRS-VGVPDERILNFGMKDNFWEMG 179

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           + GPCGPCSEI +D+           + +    +EIWNLVF+QF ++       LP   I
Sbjct: 180 DVGPCGPCSEIHYDRIGNRD-ASHLVNADDPMVVEIWNLVFIQFNREEGGVLKPLPAKHI 238

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVI 275
           D G+GLER+  V+Q+KT+NYD D+F+ + +A  + +G++          +    + +RV+
Sbjct: 239 DCGLGLERLIAVMQDKTSNYDTDIFQPIFEAIHKGSGVRAYTGFIGDEDKDGVDMAYRVV 298

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+P + + +G
Sbjct: 299 ADHVRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYASEKLNAQPGFFASLVPVVISILG 358

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDT 393
             +PEL +  + + + +  E+++F KTL RG VL    +  L +      GDV+++LYDT
Sbjct: 359 ETFPELSRDPVTVMDIINDEEKQFLKTLSRGRVLFQRAVQSLPEGTMTFPGDVSWRLYDT 418

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEK 451
           +G P D+ Q +   +GL+ +D  +F +A  +    + A +          +     L++K
Sbjct: 419 YGFPADLTQLMAEEKGLS-VDNTAFEEARRKAIETSSAGTGKFRDTLDLDVHALAELQQK 477

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
              T                          +         + AI + G+ V++  +G++ 
Sbjct: 478 GVPT--------TDDSPKYAYTFTGEGSDAVYKFEPCVGKILAIRRDGKFVDQLAAGEEG 529

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMS 570
            ++ D+T FYAE GGQ+ D G            +    +  G ++       G       
Sbjct: 530 AILLDRTNFYAEQGGQIYDVGVLTKVNDESNEFNVSNCQVRGGYIVLVGSAEGSFSVGDQ 589

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D   ++ +  NH+ TH+L++AL  +L     Q GS + PD +RFD T+   +T  
Sbjct: 590 VNERFDEDRKQLIMKNHTGTHVLNYALRKVLA-DSDQKGSLVAPDRMRFDFTNKAGMTVQ 648

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE----- 684
           ++K  E+    +I     V  +     +A    G  A+    Y D VRVV+V        
Sbjct: 649 QVKKAEEYAQQLIDTKGQVYAKNSPLGEAKKVKGLRAMFDETYPDPVRVVAVGTPVEQLL 708

Query: 685 ------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                 +G   +   CGGTH+ +   I  + I SE +I  GIRRI A+TG  A   +   
Sbjct: 709 QNPDAEEGQNTTVEFCGGTHLQNVSHIGRIVIASEEAIAKGIRRIVALTGPEAERAIARA 768

Query: 739 DEKLKSLASFLK--VSQGNVV----------GRVEEIWEE---------YRKLQLIHAKR 777
           D     L    K    +  ++           +++EI +E          +      AK 
Sbjct: 769 DRLTARLEEESKHADKKDELLANKDKFKALQKKIQEIVDEANGAQLPYWRKDSIREKAKA 828

Query: 778 KLQ------LNVEDLSCHKI-ADVNFMSHIIS-----------EVDSKELKSVMDALQKK 819
             +         +     K+  +   ++ +               +SK + + +  L+  
Sbjct: 829 IQKTLDGYTKAQQAAVAEKVLGEAKELAAVAEQPTVLVHVFAANANSKAIDNALKLLKDT 888

Query: 820 IQSGIIMLVGISKE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                +M   ++++  K   L  V + L+ +   A +       VL GG GGG+   AQ 
Sbjct: 889 ---KAVMAFSVNEDSGKVLCLAKVDKSLVSNGLKANEWVNEVCTVL-GGKGGGKDANAQL 944

Query: 878 GGPNGNKADQAIAGVASF 895
            G N +K D A+     F
Sbjct: 945 TGENVDKLDAAVELAQKF 962


>gi|74196486|dbj|BAE34378.1| unnamed protein product [Mus musculus]
          Length = 968

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/969 (32%), Positives = 475/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T    DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYLGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMNGFEE----ERRLAQLKSQGKGAGDEDLIMLDI-YAIEELRAKG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                 +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 478 LEATDDSPK----YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+ VN +I    PV T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 772

Query: 744 SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL++    +K       +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 773 SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|262527561|sp|A4W221|SYA_STRS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 872

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/918 (34%), Positives = 491/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+G     E I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +T+  G    + ++  L  +    ++G   FKLYDT+G  +++ +++ 
Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +DI  F  A++EQ+ RARA  +  GS   +    +L      + F+       
Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLAAITEESTFV------- 462

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + + +  IV      E    GQ   +VFDQTPFYAE G
Sbjct: 463 -----------------YGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G        +  T +  +KA      H +     +    +  L I+ + R+ + 
Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  +VE +
Sbjct: 680 IGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            ++ R LQ  +A  K +           +      + +++  +   D+  L++  D  ++
Sbjct: 740 AQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   + D     +A +L ++ A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKSSD----VHAGNLIKVLAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +     +  VA+ L
Sbjct: 855 GSDASAIQTLLNSVANNL 872


>gi|328353302|emb|CCA39700.1| alanyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 959

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/971 (31%), Positives = 485/971 (49%), Gaps = 100/971 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + +R+TF +FF+   H  +PSSS+IP +DPTL+FTN+GM  +K IF G   P      
Sbjct: 10  TANKVRSTFFDFFKSKDHTYVPSSSVIPYDDPTLLFTNAGMNQYKPIFLGTVDPSSDFAT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +  T  QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI   W+LLTK 
Sbjct: 70  LKRATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGYGWELLTKV 129

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L++ RLY++ +        + D EA + WK + G++ D I+  +  DNFW M + GPC
Sbjct: 130 YGLEKERLYVSYFGGDAGLGLEPDLEAKEYWKAL-GVAEDHILPGSVEDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN+VF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNQDDPDVLEIWNIVFIQFNREADGSLKPLPSKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ   +NYD D+F  L    +++TG++    +            +RV+ DH+R
Sbjct: 248 FERLVSILQNVRSNYDTDVFDPLFTKIQEITGVRPYSGHFGKEDMDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L PAL  ++   +P
Sbjct: 308 TLTFSLADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGKFFSQLAPALIEQVKETFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+ +    I E L  E+  F +TLDRG  L +   +++    ++ L G   ++LYDT+G 
Sbjct: 368 EVDKNFDTIAEILDEEEASFSRTLDRGERLFEQYAIIASKTPEQTLAGRDVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL   D   F  A E  R  ++ +    G    +     L E    ++
Sbjct: 428 PVDLTRLMAEETGLKIDD-EGFEIAKEASREASKGNGKTQGKELVKLDVHVLGELEKNSE 486

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513
                                       T  + + + AI    E+++   E    Q++ +
Sbjct: 487 -----------------VPKTDDSYKYGTKNIEASIVAIYNGKELIQSTSEVADDQQLGI 529

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+TPFYAE GGQ+ DTG  + DG+     +  +   G  +H   VE G+L     ++ 
Sbjct: 530 LLDKTPFYAEQGGQIYDTGKIVIDGVAEFNVENVQSYAGYVLHTGYVEEGVLSVSDKIIA 589

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H K +T +EL+
Sbjct: 590 GYDELRRWPIKNNHTGTHILNFALRDVLGDDVEQKGSLVAPEKLRFDFSHKKALTLSELQ 649

Query: 634 SIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682
            +ED  N++I +N+PV    +        +G  A+ G  Y D VRVVS+           
Sbjct: 650 KVEDISNEVIKKNVPVFASDVTLAVGKEINGLRAVFGETYPDPVRVVSIGVPVEELVKNP 709

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQ 738
              +    S   CGGTHV+ TG+I    I+ ES I  GIRRI A+T   A         +
Sbjct: 710 SNAEWHNASIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTSTEAHTVQRIAREK 769

Query: 739 DEKLKSLASF-----------------------------LKVSQGNVVGRVEEIWEEYRK 769
           +++L ++A                               LK    N+   V+   +E + 
Sbjct: 770 NDQLDAIAKMSFGEAKEKKLKEFNVALGKLQISVLAKNDLKTKFTNIEKVVK---DELKV 826

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV- 828
            Q   +K+ L    +  + H+ +   F++H+    ++K L      ++K+I    + L+ 
Sbjct: 827 RQKAESKKTLDTVKDYFNEHEDSPF-FVAHVPVSSNAKLLTEAFSYIKKEIPDKSLYLIV 885

Query: 829 GISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G   E K +    V+++ L     A ++  ++++ + GG  GG+ ++ Q  G N    ++
Sbjct: 886 GNESEPKIAQGCYVSDNALSKGVVASEVTNVASEFI-GGKAGGKGNICQGVGTNPEGINK 944

Query: 888 AIAGVASFLKK 898
           AI  V   LK+
Sbjct: 945 AIEAVTKILKE 955


>gi|104774413|ref|YP_619393.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423494|emb|CAI98396.1| Alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 866

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/906 (35%), Positives = 479/906 (52%), Gaps = 60/906 (6%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            FL+FF ++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  + +T+ QK +R
Sbjct: 1   MFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRITSSQKSIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYI 127
                ND++NVG+T RH T FEMLGNFS G YFKE AI  AW+ LT     DLD+ +LY+
Sbjct: 61  T----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDLDKDKLYV 116

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC----- 182
           TVY +D EA ++W ++ GL    I+++   DNFW + E GPCGP SEIF+D+G+      
Sbjct: 117 TVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQENNDVP 173

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                     E  RY+EIWN+VF +F           P  +IDTGMGLER+ ++LQ+   
Sbjct: 174 EDDPENYPGGENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERVLSILQDAPT 233

Query: 243 NYDIDLFKHLIQASEQVTG-MKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N++ DLF  +I A+E+++   KY     + ++ ++I DH+R+ SF I DG LP N GRGY
Sbjct: 234 NFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGDGALPGNTGRGY 293

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA    R LG     +  L+P +   M S YPE+      I + +++E++RFG
Sbjct: 294 VLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKVVKNEEDRFG 353

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            TL+ GL LLD ++       D+ ++G  AFK++DT+G P ++  +    +GL  +D   
Sbjct: 354 ATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAEDKGLK-VDKDG 412

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+  +E Q+ RAR     L S  ++    +L +    + F                    
Sbjct: 413 FDAEMEAQKERARKARGNLQSMGSQD--ETLMKIKDKSVF-------------------- 450

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  I+   ++V++A  G+K  ++FD+TPFYAE GGQ+ D G     
Sbjct: 451 ----EYGVYEEESQLVDIIVDDKLVDKA-DGEKATLIFDKTPFYAERGGQVADHGDIYDQ 505

Query: 538 GIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
               +      + A      H +     L    +  L ID   R  L  +HSATHLLH A
Sbjct: 506 EGNLVARVVDVQHAPNDQNLHFVDVVLPLVKGQTYKLKIDRARREGLRHSHSATHLLHAA 565

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG H  Q GS + PD LRFD T   PIT  ELK++E  VN+ I + + V T   + 
Sbjct: 566 LRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWEAIQVKTTETDP 625

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E     GA AL   KY D+VRVV +        S   CGGTH  +T +I +  I+SE +I
Sbjct: 626 ETGKKMGALALFDGKYTDKVRVVQM-----DDFSIEFCGGTHCDNTSQIGVFKIISEQAI 680

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHA 775
            AG+RRIEA+T + A  +L G+ + L  + + +K      +  ++  + EE R  +  +A
Sbjct: 681 GAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKVDGIQSKIASLQEELRSAEKQNA 740

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + Q+N             + D+  ++ I       +L+ + D  + + +S +++L   
Sbjct: 741 AYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSEGKSDVLILGAK 800

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S++K   ++ +  + L     A DL +  A + GGGG GGRP+MAQ+GG N      AI 
Sbjct: 801 SEDKANMLISLGQKALDKGLKAGDLIKSVAAIFGGGG-GGRPNMAQAGGKNPEGLQDAID 859

Query: 891 GVASFL 896
              S L
Sbjct: 860 AAVSQL 865


>gi|294507557|ref|YP_003571615.1| Alanyl-tRNA synthetase, class IIc [Salinibacter ruber M8]
 gi|294343885|emb|CBH24663.1| Alanyl-tRNA synthetase, class IIc [Salinibacter ruber M8]
          Length = 966

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/981 (32%), Positives = 483/981 (49%), Gaps = 123/981 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL+FFQ  GHE++ S+SL+P  D TL+FTN+GM  FK++F G  +  Y    
Sbjct: 19  SSEEIRQDFLQFFQAKGHEVVSSASLVPEGDGTLLFTNAGMNQFKDVFLGTGQRPYSRAV 78

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK  AI+ AW+LL + + L  
Sbjct: 79  DTQKCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKAEAIRWAWELLVERWGLAP 138

Query: 123 RRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            RLY TV++ D+        EA+ LW   + L  ++++   + +NFW M +TGPCGPCSE
Sbjct: 139 DRLYATVHEGDDDFGLSADAEAYDLWLSETPLPEERVLYEPSKENFWMMGDTGPCGPCSE 198

Query: 175 IFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           +  D           G    + +  + +E+WNLVF+Q+  Q       L    +DTGMG 
Sbjct: 199 LHVDLRPPEARQETPGRELVNIDHPQVMELWNLVFIQYNAQTDGSLEPLDDQHVDTGMGF 258

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQAS------EQVTGMKYEGNNIV--------NHRVIV 276
           ERM  VLQ K + YD DLF  L+QA       E++ G                   RV+ 
Sbjct: 259 ERMVAVLQGKESTYDTDLFAPLLQAMADRSPREEIRGYDDLHIEDDDEHEQVRIALRVVA 318

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGS 335
           DH+R+ +F I+DG++P+NEGRGYV+RRI+RRA+ Y    L   EP +  L+  L  +MG 
Sbjct: 319 DHIRAIAFAISDGVMPSNEGRGYVIRRILRRAVRYGYQTLELEEPFLHRLVDPLIEKMGG 378

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL---------------------- 373
            +  L + +  IE+ +RSE+E F +TL  G+   + V+                      
Sbjct: 379 PFDGLAEQQEFIEQAIRSEEESFLETLGTGIEFFERVVPHVTGFQDTDGEESDRLLGALR 438

Query: 374 --------------------------SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
                                     +   +   L G +AF L+DT+G P+D+ + +   
Sbjct: 439 EDAQAMDLLEKAYVDTDDENDILHSFARTARGGTLPGQIAFLLHDTYGFPIDLTRLMARE 498

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           R L  +D+  +   ++ Q+ RARA S      +  + W S+     A+ F+GYD      
Sbjct: 499 RDL-DVDMEGYETLMDRQQERARAASDFAVDQSDVQAWQSVS-PGEASVFVGYDR----- 551

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 + V+A+      V E    Q+ EV   +TPFYAEAGGQ
Sbjct: 552 -----------------AVVPDAEVRAV-----RVVETGDTQQYEVELSRTPFYAEAGGQ 589

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG        +Q+ D Q++ E I      V+      +  +   +D + R  +  +H
Sbjct: 590 VGDTGTLRFGDESVQVLDTQREGERIAHT---VDTLPEPLDGPVEAAVDAERRNHIRTHH 646

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHL+H  L   LG HV Q GS + PD LRFD +H   +    L+ IE  VN  I QN+
Sbjct: 647 TATHLMHAVLRETLGDHVQQKGSLVAPDRLRFDFSHFDAVDEDTLRHIERRVNTAIQQNI 706

Query: 648 PVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           P    R +  ++A+  GA AL   +Y DRVRV++ +       S  LCGGTHV +TGEI 
Sbjct: 707 PKQEARDVPIDEALDRGATALFDEQYGDRVRVITFDP----DFSMELCGGTHVDATGEIG 762

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L   +SE S+ +G+RR+EA+ G+ A  H+  + E L       +    ++   + E+ EE
Sbjct: 763 LFRFLSEGSVASGVRRVEAVAGKAALEHVESELETLTRARRQFRSLHTSLPEAIAEVQEE 822

Query: 767 YRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             +L     + +     + L      +   +  +  ++  +      +L+ +    + K+
Sbjct: 823 RDRLAGEVDQLRRGQLSDQLDTFIAENAASVDGITVVTGRLDRASMDDLQELGQQFRDKL 882

Query: 821 QSGII-MLVGISKEK-KASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             G + +L  + ++  KA V+  V +DL+D     A DL       LGGGG GGRP +A 
Sbjct: 883 GQGAVGVLGSVGEDGEKAYVVATVADDLVDDGALRAGDLVGTLGDRLGGGG-GGRPSLAS 941

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG +    D  + GV + ++
Sbjct: 942 AGGRDPEALDTVLDGVPALVR 962


>gi|45656657|ref|YP_000743.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|48428508|sp|P61703|SYA_LEPIC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|45599893|gb|AAS69380.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 977

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/987 (32%), Positives = 480/987 (48%), Gaps = 110/987 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +VS IR  FL +F+   H ++PSSSL+P  DPTL+FT +GMV FK +FTG  +  Y   
Sbjct: 4   KSVSEIREIFLNYFKDKSHNVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKC+R      DL+ VG+T RH TFFEMLGNFSFG YFKE AI+ A D     F  D
Sbjct: 64  TSCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGNYFKEEAIEYALDCSVNHFGFD 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQG 180
           + ++++TVY +D+EA K+W    G+  ++I R+   DNFW    ++G CGPCSE++ D+G
Sbjct: 120 KNKIWVTVYTDDDEAEKIWLSK-GIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRG 178

Query: 181 ECIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               G      G      + +R++E WN+VF QF Q  +     L +  IDTG GLER+A
Sbjct: 179 IEKGGPNCATSGTCKPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------------------------- 268
            +LQE  + YD +  + +I   E+++G+ YE                             
Sbjct: 239 LLLQEVDSVYDTNELRKIISFYEELSGISYEDKTLSEISEKKNNNQQISSQVRNETKSIQ 298

Query: 269 ---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
                  RV+ DH+RS  F I DGI P   GRGYV+RR++RRA  + R L + EP +  L
Sbjct: 299 DSRKTAFRVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKL 358

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILN 383
           +  +     + YPEL +    I +T+  E+E F KTL+ GL  ++ ++         I +
Sbjct: 359 VDKVIEIYKARYPELQRNAAAITKTILVEEELFLKTLELGLEKIESLVQKTKAGGKTIFS 418

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G  AF LY T+G P ++ ++I+  +GL   D   F + LE+ R  +R             
Sbjct: 419 GADAFLLYGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWKVNKVSLMTG 477

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKE----DRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
           +          T+F+GY  + G   +        K       +D     S+         
Sbjct: 478 LNVD------KTEFLGYSSVSGKGNITHLFYNSPKSSNSLSQVDSKLQSSTPAGTGSYDS 531

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           + V     GQ   +V ++TPFY E GGQ+GD G         ++ D QK+ + I      
Sbjct: 532 KQVSSLKEGQAGAIVLNKTPFYPEGGGQVGDIGFLRQGKNVFKVFDTQKENDSIIHF-GE 590

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V  G       L   ++   R +L  +HS THLL+ AL T+LG HV Q GS ++P+ LRF
Sbjct: 591 VLSGEFIVSQELEAEVEITRRERLKFHHSGTHLLNGALRTLLGDHVLQKGSIVSPEYLRF 650

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +H   +TS E++ IE  VN+ I +N PV T+ ++ EDA  +GA A  G KY +RVRVV
Sbjct: 651 DFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKKTGAVATFGEKYGERVRVV 710

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +     G  S   CGGTHVS TGEI   +I  ESS  AG RRIE + G         + 
Sbjct: 711 QM-----GDASIEFCGGTHVSRTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRF 765

Query: 740 EKLKSLASFLKVSQ------------------------------------------GNVV 757
            +L      L +                                             N+ 
Sbjct: 766 SELTESVQNLNLKIKSELGEEGTKILILSFIPGPDEIREKLEKEGASAVSFFRDLSENIA 825

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSV 812
            ++EE    + K++   A+R  + N   +     + V       +S I  + D   LK +
Sbjct: 826 TKIEENTSSFLKIKKNLAERDFENNTSVIENVLASSVDTGIGKIVSAIFEDKDPNSLKGL 885

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGR 871
            D L+ + ++ +++L   + E  AS++I  + +L     +  +L + + ++L GG GGGR
Sbjct: 886 SDNLKVREKNLLVILGSRNSEN-ASIVITCSSELTLKGIHCGNLIKTACELL-GGKGGGR 943

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ GG      + AIAGV +  K+
Sbjct: 944 PDMAQGGGKEKQNLESAIAGVINEAKQ 970


>gi|327349463|gb|EGE78320.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1088

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/965 (31%), Positives = 462/965 (47%), Gaps = 95/965 (9%)

Query: 7    IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
            +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       +  
Sbjct: 126  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLKRA 185

Query: 62   TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
               QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +WDLLTK + L+
Sbjct: 186  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKVYGLE 245

Query: 122  QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
              RLY+T ++         D EA +LW    G++ D ++     DNFW M E GPCGPCS
Sbjct: 246  PDRLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 304

Query: 174  EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
            EI +D+           +++    +EIWN VF+Q+ ++  +    LP   IDTGMG ER+
Sbjct: 305  EIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMGYERL 363

Query: 234  ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
             ++LQ K++NYD D+F  L     ++TG +                 +RV+ DH+R+ +F
Sbjct: 364  VSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIRTLTF 423

Query: 285  LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
             I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 424  AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFPEIRR 483

Query: 343  AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
             +  + E L  E+  F KTLDRG  L +     +       L+G   ++LYDT G P+D+
Sbjct: 484  KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGFPVDL 543

Query: 401  MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             Q +   RGL        N   EE R +A+  S G G  T + +  ++ +          
Sbjct: 544  TQLMAEERGLTID-----NAEFEEARLKAKEASKGQGKQTADVVKLTVHDLG-------- 590

Query: 461  DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                       +               ++S +KAI    + V+       G++  ++ D+
Sbjct: 591  ------LLETMNNVPKTNDDAKFGRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGIILDR 644

Query: 518  TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
            T FYAE GGQ  DTG  I DG      +  +   G  +H   ++ G      S++   D 
Sbjct: 645  TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYGGYILHTGFMKYGSFNVNDSVIAEYDE 704

Query: 578  QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
              R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L+ IE 
Sbjct: 705  LRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIER 764

Query: 638  NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
               D I QN  V  + +        SG  A+ G  Y D VRVVSV               
Sbjct: 765  ISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 824

Query: 686  GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------HLMGQD 739
                S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A            + 
Sbjct: 825  WKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 884

Query: 740  EKLKSL---------ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776
            ++   +         A  L+V    +    V +V          +++ E  +  Q + +K
Sbjct: 885  QRFDKMELGPQKEMEAKLLQVDLNQLTISAVEKVRFRERFTQIHKKVVEGQKAAQKLESK 944

Query: 777  RKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834
            + L          +  D  + +  +    + K +   ++ ++ K+ +  + +    K   
Sbjct: 945  KALDAITGYFETPENKDAPHLVLQLPISANPKAVSDSLNFVKTKMHNKSVYVFAADKGAG 1004

Query: 835  KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K      V + L        + A   + ++ GG  GG+  +A   G    K + AI    
Sbjct: 1005 KVVHGCHVAQSLSAQGATPNEWANTVSSIV-GGRAGGKAPVAIGNGTEAEKLEDAIKAAT 1063

Query: 894  SFLKK 898
             +L+K
Sbjct: 1064 EYLEK 1068


>gi|88658226|ref|YP_507768.1| alanyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|123492839|sp|Q2GFL5|SYA_EHRCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88599683|gb|ABD45152.1| alanyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 887

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/918 (41%), Positives = 549/918 (59%), Gaps = 60/918 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  VS++R +F++FF KNGH++ PSS LI  +DP+L+FTN+GMV FK +FT       
Sbjct: 2   MKNNLVSNLRKSFIDFFAKNGHQVFPSSPLILKDDPSLLFTNAGMVQFKQMFTNPNNANV 61

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+ AW+ + KE 
Sbjct: 62  NTATSSQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGSYFKEGAIEFAWNFVIKEL 121

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L + RLY TVY +D+EAF LWKKISG+S  +II+ITT+DNFWSM  TGPCGPCSEIF+D
Sbjct: 122 SLSKDRLYFTVYHDDQEAFDLWKKISGVSDSRIIKITTSDNFWSMGNTGPCGPCSEIFYD 181

Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+ + GGLP    E+G R+ EIWNLVFMQ++++   E  +LPK  IDTGMGLER+A V+
Sbjct: 182 YGDNVKGGLPGTPEEDGARFTEIWNLVFMQYDRKLDGELCVLPKKCIDTGMGLERIAAVM 241

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           Q   +NYDI LFK LI AS++ +G      N + HRVI DH+RS++FLIA+G+ P NEGR
Sbjct: 242 QGVHDNYDISLFKALIAASKEQSGNS---TNELAHRVIADHVRSAAFLIAEGLTPGNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLR 352
            Y+LRRI+RRA  Y  +L Y + LM  + P L  E     M   YPELI AK LI   L+
Sbjct: 299 NYILRRIIRRAARYVYMLKYDDALMYKVFPTLIDEESCGYMADYYPELIHAKDLIMSILK 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E F  TL R L LL+  L +L   +IL+GD+ FKLYDT+G P+DI  DI+  +G+  
Sbjct: 359 IEEENFKDTLVRALPLLEKELMNLSSGDILSGDIVFKLYDTYGFPVDITLDIIKEKGVK- 417

Query: 413 IDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            D   F   + +Q+ R++ +  +       E+ W  +KE+ G+T+F+GY+          
Sbjct: 418 FDEQGFYDNMNKQKERSKLNHSIKSDQQLKEEFWVDIKERCGSTKFVGYERYD------- 470

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             + V +IV  G + VE A  G KV ++ D TPFYAE+GGQ GD
Sbjct: 471 ----------------TKATVLSIVCGGDKNVEIANVGDKVSILLDITPFYAESGGQKGD 514

Query: 531 TGCA----------IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
            G              +    ++ D +K  + +++H  I+++G L     +   ID + R
Sbjct: 515 VGIFNVIVRQEKELFANDNIAEVIDTKKVLDTLYIHECIIKQGSLMVGDVIFAKIDCERR 574

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           R L  NHSATHLLH+ L + + S + Q GS ++ + LRFD ++   +T  +L  IED + 
Sbjct: 575 RNLCANHSATHLLHYVLKSEIDSSIMQKGSLVSDEKLRFDFSYGVALTKEQLTLIEDKMY 634

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHV 699
            +I+ N PV++ + + +DA+A GA AL   KY +  VRVVS++       S  LC GTHV
Sbjct: 635 SLISGNNPVISHVCDLKDAVAGGAVALFTEKYEEHGVRVVSIKD------SKELCCGTHV 688

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             T EI    IVSE+SI  GIRRIEA+TG+ A  +   Q++ L S+A  +KV   NV+ +
Sbjct: 689 KYTSEIGCFKIVSEASIACGIRRIEAVTGRYAIDYFRQQEKMLNSIAESVKVPVDNVLVQ 748

Query: 760 VEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           ++++ ++ ++L+   +     + N++ ++  KI +V+F+   +S +    ++  ++   K
Sbjct: 749 IDKLDKKNQELEQKLSDVYFDMINLQGVNTEKIGNVDFLYSNLSNIPVNVMRKFIN---K 805

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            + +  I+L      +    ++ V   L  +  AVD  ++   ++    GGG   +AQ  
Sbjct: 806 HLTADRIILFANVVGQNVVCVVGVGNSLHCKVKAVDFVKMIGTMVKS-KGGGNAQLAQIN 864

Query: 879 GPNGNKADQAIAGVASFL 896
           G    + D  ++ V S L
Sbjct: 865 GEYVKEID-IMSNVKSKL 881


>gi|320581101|gb|EFW95323.1| Cytoplasmic alanyl-tRNA synthetase [Pichia angusta DL-1]
          Length = 954

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/967 (30%), Positives = 472/967 (48%), Gaps = 95/967 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + +R TFL++F+  GH  + SSS+IP +DPTL+F N+GM  +K IF G   P      
Sbjct: 6   TATKVRNTFLDYFKDRGHTFVSSSSVIPHDDPTLLFANAGMNQYKPIFLGTVDPSSSFAS 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AIQ +WDLLT  
Sbjct: 66  LKRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIQYSWDLLTNV 125

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L++ RLY+T ++         D EA + WK   G++ D I+     DNFW M + GPC
Sbjct: 126 YGLNKDRLYVTYFEGDAANGLEPDLEAKQYWKD-VGVADDHILPGNAKDNFWEMGDQGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+QF ++       LP   +DTGMG
Sbjct: 185 GPCSEIHYDRI-GGRNAASLVNQDDPDVLEIWNNVFIQFNREQDGSLKPLPAKHVDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ   +NYD D+F+ L    +++TG++                 +RV+ DH+R
Sbjct: 244 FERLVSVLQNVRSNYDTDVFQPLFSKIQEITGVRPYSGKFGKDDLDGIDTAYRVLADHVR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   Y R             L P L  ++   +P
Sbjct: 304 TLTFALADGGVPNNEGRGYVLRRILRRGARYVRKYMNYPIGKFFSQLAPTLIEQVKDIFP 363

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+      I E L  E+  F +TLDRG  L +   +++    ++ L G   ++LYDT+G 
Sbjct: 364 EVATNTDTIFEILDEEEASFARTLDRGEKLFEQYAIIASKTPEQTLAGRDVWRLYDTYGF 423

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F +A       ++A     G    +     L        
Sbjct: 424 PVDLTRLMAEEAGL-NIDEEGFEKARLASLEASKAGGSKSGKTLLKLDVHIL-------- 474

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEV 513
                              +           + + +  I    E++   E   +GQ++ V
Sbjct: 475 ---------GALDSNKDIPVTDDSYKYGNQDIKTKIVGIYNGKELLGSTEGTEAGQQLGV 525

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + ++TPFYAE GGQ  DTG  + DG+     +  +   G  +H   V  G       ++ 
Sbjct: 526 LLEKTPFYAEQGGQEYDTGKIVIDGVAEFEVENVQSYAGYVLHTGHVVEGKFSVGDQVIA 585

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+ AL  ILG  V Q GS +  + LRFD ++   +T  +L+
Sbjct: 586 GYDELRRWPIRNNHTGTHILNLALREILGDGVDQKGSLVAAEKLRFDFSNKAAVTLEQLE 645

Query: 634 SIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682
            IE   N II  ++PV ++ +         G  A+ G  Y D VRVVS+           
Sbjct: 646 KIEAICNKIIKDSMPVYSKPVALNVAKSIYGLRAVFGETYPDPVRVVSIGVPVEELLAKP 705

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS-------- 733
             ++   +S   CGGTHV+ T +I  L IV ES I  GIRRI A+TG  A          
Sbjct: 706 DNKEWYDYSVEFCGGTHVAKTSDIKELVIVEESGIAKGIRRIVAVTGTEAHEVQRIAKEF 765

Query: 734 -----------HLMGQDEKLKSLASFL---------KVSQGNVVGRVEE-IWEEYRKLQL 772
                          +++KLK  ++ L         K    +   ++++ + +E +  Q 
Sbjct: 766 DEQLDAIEKMPFGEAKEKKLKETSTKLGQLSISVLQKAQLKDKFAKIDKAVKDEVKARQK 825

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              K+ L    E  + H+  D  F+   I    ++K +   ++ ++K+ +   + L+   
Sbjct: 826 ADTKKALDAVKEFFAEHE--DAPFLVKHIDISANAKIITETINMIKKENKEKSLFLITGQ 883

Query: 832 KEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           K+  + +  + ++++ L +  A ++A ++A  + GG  GG+ ++ Q  G    + D+AI+
Sbjct: 884 KDDARVAQGVYISDEHLGKVQATEVANVAASYI-GGKAGGKGNVCQGMGTEAAQIDKAIS 942

Query: 891 GVASFLK 897
            V   L+
Sbjct: 943 AVEKLLE 949


>gi|256825088|ref|YP_003149048.1| alanyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688481|gb|ACV06283.1| alanyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
          Length = 893

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/885 (34%), Positives = 453/885 (51%), Gaps = 64/885 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L +F+   H ++PS+ LI  +DP L+F N+GMVPFK    GQ+ P +Q  
Sbjct: 1   METAEIRRRWLAYFEGKDHAVVPSAPLI-HDDPNLLFVNAGMVPFKPYLLGQQTPPWQRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++ VG+T+RH TFF+M GNFSFG YFK  AI +AW+ LT      
Sbjct: 60  TSVQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKAGAISMAWEFLTTPEAGG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L +  L+ TVY++D+EAF LW +++ L A++I+R    DN+WSM   GP GP SEIF
Sbjct: 116 GLGLRKDDLWATVYNDDDEAFDLWLELTDLPAERIVRRDEEDNYWSMGVPGPGGPSSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
            D+G    G   G + + +R++EIWNLVFMQ E      + +      LP+ +IDTGMGL
Sbjct: 176 LDRGAEY-GRDGGPAVDEDRFMEIWNLVFMQHELSAVRSKSDFDIAGNLPQQNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280
           ER+A+VLQ   N Y+ID    ++  + ++ G++Y             + V+ RV+ DH+R
Sbjct: 235 ERIASVLQGVDNLYEIDQVYPVLDRAAEMAGVEYGASSGHIASESHPHDVHLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   LI DG++P NEGRGYVLRR++RRA+   RLLG T+P +  LLP     MG +YPEL
Sbjct: 295 SGLMLIGDGVVPGNEGRGYVLRRMLRRAVRSMRLLGVTDPALPELLPISRDLMGESYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398
           +     I +   +E++ F +TL+ G  + D           ++  GD AF L+DT+G P+
Sbjct: 355 VSGWDRISQIAYAEEDAFRRTLEAGTTIFDVAAGQTKDAGQKVFPGDKAFALHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR RA+A +    SG      +      GAT + 
Sbjct: 415 DLTLEMAAEQGL-AVDEAGFRGLMTEQRERAKADARAKKSGHANTEVWRELRSLGATDWR 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
            Y  L                            V  +V+ GE V     G+  +VV D T
Sbjct: 474 AYTDLATD-----------------------GRVVGLVRDGERVGGLSQGETGQVVLDTT 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
            FYAE+GGQ+ D G    DG RL++ DVQ+  +G+  H   V  G +         +D  
Sbjct: 511 SFYAESGGQVADAGIITLDGARLEVVDVQRPVKGLVAHTVKVASGEVTEGADARAEVDPT 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R + +  HS TH++H AL  +LG    Q+GS   P  LR D   +  + +A    +E+ 
Sbjct: 571 WRIEAAQAHSGTHVVHAALRQVLGPSALQSGSYNKPGYLRLDFAWNGALDAATRSELEEV 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  +  +LPV    M+   A   GA AL G  Y++ VRV+ +    GG  S  LCGGTH
Sbjct: 631 ANLAVRDDLPVSAHWMSLPAAREWGALALFGETYDEDVRVIEI----GGPWSRELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  + +I  L +  ESS+ +G RR+EA  G  A  HL  +   +  L++   V    +  
Sbjct: 687 VQHSSQIGALTLTGESSVGSGSRRLEAFVGLNALRHLATERALVAELSTIAGVQPTELKD 746

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVM 813
           +V ++    ++ +      K Q              ++  +  ++  + EVD  +L++V 
Sbjct: 747 KVSQLVARLKETEREITAMKRQQAQGATAGLVDEAEQVGGIRLVTKELPEVDGGDLRTVA 806

Query: 814 DALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLA 856
             ++ +       +  +S    K  V++  T+   D    A  L 
Sbjct: 807 QDVRGRFGDAAAAVALVSTAGAKPVVVVATTQAARDAGVKAGALV 851


>gi|15807291|ref|NP_296021.1| alanyl-tRNA synthetase [Deinococcus radiodurans R1]
 gi|20532268|sp|Q9RS27|SYA_DEIRA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|6460111|gb|AAF11848.1|AE002062_1 alanyl-tRNA synthetase [Deinococcus radiodurans R1]
          Length = 890

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/923 (36%), Positives = 491/923 (53%), Gaps = 72/923 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-------IFTGQEK 55
             + IR  +L FF+  GH  LPS S I   DPT +FT +GM PFK        +F GQ  
Sbjct: 6   TTAEIRERYLYFFETKGHLRLPSHSTIAP-DPTTLFTVAGMQPFKENFMGAPAVFDGQ-- 62

Query: 56  PVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              + VTT QKCVR G    D++NVGRT RH + FEM+GNFSFG YFK  AI  AW+ LT
Sbjct: 63  -PSKRVTTAQKCVRVG----DIENVGRTRRHLSLFEMMGNFSFGDYFKRDAIHWAWEFLT 117

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGP 168
             +   +D+ ++Y+TVY +D+EAF  W +  GL A+ I R   ++NFW          GP
Sbjct: 118 GPEWMGMDKDKMYVTVYKDDDEAFGYWTQDIGLPAEHIHRFDADENFWPANAPLEGPNGP 177

Query: 169 CGPCSEIFFDQGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILP 220
           CGPCSEI++D+GE       G    + E  R++E+WNLVF Q+++Q+           LP
Sbjct: 178 CGPCSEIYYDRGENYGDDTWGDYYQTRESARFLEVWNLVFPQYDRQDLDASGQPVLKDLP 237

Query: 221 KMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLR 280
             +IDTGMGLER+A+V+Q+  + Y  D+FK +++   +++G  YEG   V+HRV+ +H+R
Sbjct: 238 FKNIDTGMGLERVASVVQDVPDFYSNDVFKPIVERVAELSGKPYEGETSVSHRVVAEHIR 297

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S S ++ADG   +N GRGY  R+IMRRA+ +  +LG  EP +  L+  +   MG AYPEL
Sbjct: 298 SVSMIVADGTAFSNTGRGYTARKIMRRAIRHGYMLGLREPQLYRLVELVVDSMGGAYPEL 357

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
              +  +E ++R+E+E+F KTL+ G+  L G+LS + K   L G  AF+LYDT+G P+D+
Sbjct: 358 QHNQSRVEASVRAEEEQFLKTLEGGIKRLGGLLSGMEKGSTLVGKDAFELYDTYGFPVDL 417

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            ++I    G   +D   + ++LE  +  ARA S   G            +   ATQF+GY
Sbjct: 418 TKEIAEEYG-VSVDEAGYAESLEHAQEIARAGS-KYGKSELFGGHQEALDGLPATQFVGY 475

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D   G                          V A++  GE +    +G +  VV  QTPF
Sbjct: 476 DQTSGD-----------------------GQVLALLSGGERLSHLPAGSEATVVLSQTPF 512

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y E GG++GDTG    DG    + D QK  +G+F+H  +VE+G L+    +   +  +  
Sbjct: 513 YGEGGGEVGDTGRLEWDGGAGIVRDTQKTKQGVFLHDVLVEQGELKEGTRVRGVVSPER- 571

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
             +  +H+ATHLLH AL  +LG  V Q GS +  D LRFD +H   +++ E+  +E  V+
Sbjct: 572 AAIQRHHTATHLLHAALRAVLGGGVQQKGSRVAADQLRFDFSHGAAMSAEEIAQVETLVS 631

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG----GVHSSALCGG 696
             ++ N PV  R M   +A A+GA AL G KY D VRVV VE +       V S  LCGG
Sbjct: 632 RWVSANFPVSWREMPIAEAKAAGATALFGEKYGDVVRVVRVEGDVDFGGHAVSSMELCGG 691

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HVS TG+I    IVS+ ++ AG+RRIEA+ G++A + L G+       A+ L  S   +
Sbjct: 692 AHVSRTGDIGAFVIVSDENVAAGVRRIEALAGEQATAWLRGRLNASAKAAALLNTSPEGL 751

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVED-------LSCHKIADVNFMSHIISEVDSKEL 809
             RV  +  + +  +   A+ + QL               ++      S  +S ++  EL
Sbjct: 752 EERVSGLQGQLKAAEKETAQARRQLAEAQMGGGGSAAQTRELGGFKVASLKLSGIEGNEL 811

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           +   D L  +  + ++++       K  V+    + +    +A  L    A   GG G G
Sbjct: 812 RGAADKLLDQSGADLVVIAS----DKGLVVKATKDAVAKGAHAGQLVSKLAAAGGGKG-G 866

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           GRP MAQ+G  +   A  A+   
Sbjct: 867 GRPDMAQAGITDAAGALGALDTA 889


>gi|288918208|ref|ZP_06412563.1| alanyl-tRNA synthetase [Frankia sp. EUN1f]
 gi|288350378|gb|EFC84600.1| alanyl-tRNA synthetase [Frankia sp. EUN1f]
          Length = 880

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/915 (35%), Positives = 480/915 (52%), Gaps = 60/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G     +   
Sbjct: 1   MDTAEIRRRFLNHFSERGHTVVPSASLVAQ-DPTLLLVNAGMVPFKPYFVGDLTAPWSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQKCVR      D++NVGRT RH +FF+M GNFSFG YFK  AI  A++L+T+ +  +
Sbjct: 60  TSVQKCVRTV----DIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELVTEGYGFN 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA  +W+ +  L A++I R    DNFWSM   GPCGPCSEI+FD+G 
Sbjct: 116 PDDLWATVYLDDDEAESIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGP 173

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236
              G   G   + +RY+EIWNLVFMQ+ +    E        LP  +IDTGMGLERMAT+
Sbjct: 174 EY-GRDGGPEADEDRYLEIWNLVFMQYARGEGSEYGYEIVGDLPARNIDTGMGLERMATI 232

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++ A+ ++TG +Y  +    V  RV+ DH R+++ LI+DG+ P+N
Sbjct: 233 LQGVENLYEIDISRPVLDAAGRLTGARYGADPAADVRLRVVADHTRTAAMLISDGVSPSN 292

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  LL  +   MG  YPEL+     I     +E
Sbjct: 293 EGRGYVLRRMLRRAVRDARLLGAREPVMAELLAEVRQAMGPIYPELVDQAEAITAVAVAE 352

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  L D  ++         L+G+ AF+L+DT+G P+D+  D+    GL  
Sbjct: 353 ETAFLETLRTGTTLFDTAVTQARSSGSAQLSGESAFRLHDTYGFPIDLTIDMAADAGLT- 411

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + +E QR  A+A       G  +   +  +    G T F GY  L        
Sbjct: 412 VDEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGYTEL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                             S V  IV    G        G++V +V D TPFYAE GGQ  
Sbjct: 464 ---------------TRESGVVGIVGIGDGSSRVAVGEGEEVGIVLDTTPFYAEGGGQEA 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    DG   ++ DVQ+    + +H   V RG LR    + + +D + RR +S +H+A
Sbjct: 509 DLGVIRFDGGECEVLDVQRPVADLVMHRVKVLRGELRVGADVAVEVDVERRRAVSRSHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H A    LG   +Q GS  +P  LRFD      +  + L  +ED VN++  ++L V
Sbjct: 569 THLVHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEVALRDLEV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              +  + +A   GA AL G KY D+VRVV     D G ++  LCGGTHVSS+ ++  + 
Sbjct: 629 RWYVTTQAEARRLGAMALFGEKYGDQVRVV-----DVGDYARELCGGTHVSSSAQLGAIK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++SESSI AG RR+EA+ G  A   L  +   +  L++ LK     +  RV +I    R 
Sbjct: 684 LLSESSISAGTRRVEALVGIDAFRFLAREHVLVSQLSTALKARPDELTDRVADIVGRLRD 743

Query: 770 LQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823
            +    + +                 + +V  ++  +     + +++ +   ++ ++   
Sbjct: 744 AERELERLRAQAVLAGAAALAAGAEAVGEVALVTAQVPAGTPADDVRLLALDIRGRLAGR 803

Query: 824 IIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++V    E  A V+   T+D        A DL R S   LGG G GG+P +AQ G  +
Sbjct: 804 PAVVVVTEAEGAAIVVA--TDDAARGRGLRAGDLIRQSWAALGGKG-GGKPDVAQGGRGD 860

Query: 882 GNKADQAIAGVASFL 896
            +   +  A +   +
Sbjct: 861 ASMIPKVFARIRELV 875


>gi|223933644|ref|ZP_03625622.1| alanyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223897674|gb|EEF64057.1| alanyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 872

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/918 (34%), Positives = 489/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+G     E I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIDIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +T+  G    + ++  L  +    ++G   FKLYDT+G  +++ +++ 
Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +DI  F  A++EQ+ RARA  +  GS   +    +L      + F+       
Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLAAITEESTFV------- 462

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + + +  IV      E    GQ   +VFDQTPFYAE G
Sbjct: 463 -----------------YGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G        +  T +  +KA      H +     +    +  L I+ + R+ + 
Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  +VE +
Sbjct: 680 IGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            ++ R LQ  +A  K +                  + +++  +   D+  L++  D  ++
Sbjct: 740 AQQVRDLQKENAALKEKAAAAAAGDVFKDVKDANGIRYIASQVQVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   + D     +A +L ++ A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKSSD----VHAGNLIKVLAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +     +  VA  L
Sbjct: 855 GSDSSAIQTLLNSVAENL 872


>gi|302023989|ref|ZP_07249200.1| alanyl-tRNA synthetase [Streptococcus suis 05HAS68]
 gi|330833035|ref|YP_004401860.1| alanyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329307258|gb|AEB81674.1| alanyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 872

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/918 (34%), Positives = 489/918 (53%), Gaps = 68/918 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+G     E I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +T+  G    + ++  L  +    ++G   FKLYDT+G  +++ +++ 
Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +DI  F  A++EQ+ RARA  +  GS   +    +L      + F+       
Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLAAITEESTFV------- 462

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + + +  IV      E    GQ   +VFDQTPFYAE G
Sbjct: 463 -----------------YGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G        +  T +  +KA      H +     +    +  L I+ + R+ + 
Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  +VE +
Sbjct: 680 IGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            ++ R LQ  +A  K +                  + +++  +   D+  L++  D  ++
Sbjct: 740 AQQVRDLQKENAALKEKAAAAAAGDVFKDVKDANGIRYIASQVQVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++LV    +K   ++   + D     +A +L ++ A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLVAAIGDKVNVLVASKSSD----VHAGNLIKVLAPIVA-GRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +     +  VA  L
Sbjct: 855 GSDSSAIQTLLNSVAENL 872


>gi|195577578|ref|XP_002078646.1| GD22412 [Drosophila simulans]
 gi|194190655|gb|EDX04231.1| GD22412 [Drosophila simulans]
          Length = 948

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/962 (30%), Positives = 447/962 (46%), Gaps = 83/962 (8%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           M       +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P  
Sbjct: 1   MKLLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNS 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 61  EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 120

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M E
Sbjct: 121 LTQRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGE 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID
Sbjct: 180 TGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276
            GMG ER+ +V+Q K +NYD DLF  L  A +  TG                 + +RV+ 
Sbjct: 239 CGMGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 299 DHARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G
Sbjct: 359 AFPEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ Q +   + L  ID+  +       +  +   S G G+   E+I   +       
Sbjct: 419 FPVDLTQLMAEEKSLK-IDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQ 473

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +  G        F  +   V  ++         +S + A+  + + V E  SGQK  +V 
Sbjct: 474 E-QG-VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVL 531

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE+GGQ+ D G  +            +    G ++ H  V  G L+    L L 
Sbjct: 532 DKTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSK 651

Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            E    +++ +N+P+  +           G  ++    Y D VR             S+ 
Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVR-------PANKPPSSF 704

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
                +  +G IM   I SE +I  GIRRI A+TG  A   L   +   + +   LK + 
Sbjct: 705 AAAPTLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQEI-VRLKATI 763

Query: 754 GN---------VVGRVEEIWEE-----------------YRKLQLIHAKRKLQLNV---- 783
            N          V  + E+ E+                  + L+     ++  L      
Sbjct: 764 DNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKERALRAAVSV 823

Query: 784 -----EDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGISKE-KKA 836
                    C    +   +   +   ++ K L + +  ++ ++     M + +  + KK 
Sbjct: 824 TVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLSVDADSKKI 883

Query: 837 SVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K D+ +   + F
Sbjct: 884 FCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDEIVQLASKF 942

Query: 896 LK 897
            +
Sbjct: 943 AQ 944


>gi|262527560|sp|B1HUK4|SYA_LYSSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 908

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/933 (34%), Positives = 492/933 (52%), Gaps = 85/933 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +LEFF++ GH   PS+ L+P NDP+L++ NSG+   K  F G+  P    +
Sbjct: 22  MKAVDIRQMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRVIPDNPRI 81

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K   
Sbjct: 82  TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMG 137

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D   L IT++ ED+EA+ +W +  G+  +++IR+    NFW + E GP GP SEIF+D+
Sbjct: 138 FDPELLSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDR 194

Query: 180 GECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G                E ERY+EIWNLVF QF          LPK +IDTGMGLER+ +
Sbjct: 195 GVEYGSDENDPEMYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVS 254

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRS 281
           V+Q    N+D DLF  +I+  E+    KY+  + V+               +VI DH+R+
Sbjct: 255 VVQNVPTNFDTDLFMPIIEKIEEFANRKYKRPSEVDLNEIFGSEEDINTPFKVIADHIRT 314

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G  +P M  L+P +   M   YPE+ 
Sbjct: 315 VAFAIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVT 374

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399
           +    I+  +++E+ RF +TLD GL + + V         + + G  AF+LYDT+G P++
Sbjct: 375 EKCEFIQRVIKNEEIRFHETLDGGLAIFNEVAESQKAAGHDFIPGADAFRLYDTYGFPIE 434

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + ++     G+  +D   F  A+EEQR RARA    + S   +     L     A++F+G
Sbjct: 435 LTEEYAEEVGMK-VDHEGFETAMEEQRERARAARQDVDSMQVQNEV--LANLTVASEFVG 491

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           +D L                         ++ + A++  G++ + A  GQ+  V+  +TP
Sbjct: 492 FDTL-----------------------VANTEIAAMIVNGQVEKVASEGQEALVILAKTP 528

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE GGQ+ D+G    D     + DVQK   G  +H  IVE G +  E ++   +   +
Sbjct: 529 FYAEMGGQIADSGIISNDSFTAVVKDVQKAPNGQPLHTVIVESGEMHVEDAVQAIVHRDD 588

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  +  NH+ATH++  AL  +LG HV+Q GS + PD LRFD +H   +T  EL+ IE  V
Sbjct: 589 RNLIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIV 648

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ +  ++ VV   M  + A A GA AL G KY D VRVVS+     G +S  LCGG HV
Sbjct: 649 NEKVWDDIEVVIEEMAIDQAKAKGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHV 703

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             + EI    IVSE  I AG RRIEA+TG+ A   +  ++  L   A+ LK +  ++V +
Sbjct: 704 KRSSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEVVKEEEALLNDAAALLKANPKDIVTK 763

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH---KIADVNFMSHIIS--EVDSKELKSVMD 814
           V+ +  +Y++LQ  +     ++       +      +    S        D+  L+ +MD
Sbjct: 764 VQALQGDYKELQRDNEALSQKIANAHSWGNCRCSTNNWRCHSSFYKSRSKDNNLLRQMMD 823

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN----------AVDLARLSAKVLG 864
            L+  +   +I+L  +  +   ++   +T  +++R+              L  +      
Sbjct: 824 DLKALMPKAVIVLGAVDGDLSDAMCRGIT--IINRWQLPCWKYREIWCQKLVVVI----- 876

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
              GG RP MA +G  + +K D+A+  V  ++K
Sbjct: 877 ---GGVRPDMAMAGAKDASKLDEALLSVYDYVK 906


>gi|81871231|sp|Q8CFX8|SYAC_MESAU RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|26522952|dbj|BAC44844.1| alanyl trna synthetase [Mesocricetus auratus]
          Length = 968

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/969 (32%), Positives = 475/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FAIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDAKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGLLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRAKG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                 +     + V A+ ++   VEE V+GQ+  VV D+T 
Sbjct: 478 LEATDDSPK----YNYHSDSSGAYVFECTVATVLALRREKMFVEEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKEA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+ VN +I    PV T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIVNAMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   +
Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLRR 772

Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL+   + +K       +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 773 SLSIMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|330794423|ref|XP_003285278.1| alanyl-tRNA synthetase [Dictyostelium purpureum]
 gi|325084730|gb|EGC38151.1| alanyl-tRNA synthetase [Dictyostelium purpureum]
          Length = 944

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/969 (30%), Positives = 458/969 (47%), Gaps = 98/969 (10%)

Query: 2   SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
            +V+ IR TF+EFF     H  +PSS++IP +DPTL+F N+GM  FK IF GQ  P    
Sbjct: 1   MDVNQIRKTFIEFFVNKAEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQ 60

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT
Sbjct: 61  AKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAISWAWELLT 120

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + LD+ RLY+T +        + D EA  LW +   L  ++++     +NFW M + G
Sbjct: 121 EVYGLDKERLYVTYFRGDPEKGLEPDNEAKNLWLQY--LPEERVLPFGMKENFWEMGDQG 178

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSEI +D+     G  P  + +    IEIWNLVF+QF ++  +    LP   +DTG
Sbjct: 179 PCGPCSEIHYDKVPGRNG-APFVNADDPTLIEIWNLVFIQFNREADKSLRPLPNKHVDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVD 277
           MGLER+ +++Q+   NYD D+FK + +A ++VTG           +      + +RVI D
Sbjct: 238 MGLERLTSIIQKVPTNYDTDVFKPIFEAIQEVTGYPEPYGGKVGAEDSQQVDMAYRVIAD 297

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ SF IADG  P+ +GRG VLRRI+RRA+ Y  + L         L+  +    G  
Sbjct: 298 HIRTLSFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDVVVQNFGEF 357

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           YPEL +    I   L  E++ F KTL++G+   + ++     D +L+   A+ L    G 
Sbjct: 358 YPELRKKPEHIRMVLTREEDMFNKTLEKGIQEFEKMIKKTT-DGVLSAPNAYFLSTVCGF 416

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +   +GL  +DI  F +  E Q    R       +  T               
Sbjct: 417 PIDLTTIMAEEKGLK-VDIQGFEKLCEAQSEIDRKRQKEKKTELT--------------- 460

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
            +G      + ++K +   +           V + VKAI    E V+    GQ   +V +
Sbjct: 461 -LG---AEANAWLKNNNIKITDDSFKYQQKEVQTTVKAIWNGKEFVDTVPKGQLCGIVLE 516

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK----AEGIFVHHAIVERGILRTEMSLV 572
            T FY E GGQ+ D G       +    DV+         + + +   E   L+    + 
Sbjct: 517 STNFYPEQGGQIYDVGQLSFVDDQKTAFDVKDCKVFGGYVLHIGYLSYECTELKVGDKVE 576

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            T+DY  R  +  NH++TH++++AL ++LG  + Q GS +     RFD +  + +T  EL
Sbjct: 577 STVDYTRRSPIMSNHTSTHMVNYALKSVLGEGIEQRGSFVDASRFRFDFSFGRAVTKDEL 636

Query: 633 KSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVR-----------VVS 680
             I+  VND+I + L V    +   +    +G  A+ G  Y D VR           + +
Sbjct: 637 AKIDQIVNDLIFKQLNVYAQEVPLAKAKTINGLRAVFGEVYPDPVRVVSVGVPVDQLIEN 696

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
               +   +S   CGGTH+++T +  L  I+SE ++ AG+RRI A+TG  A +      E
Sbjct: 697 PTNAEWANYSIEFCGGTHLTNTKQAELFTIISEETLGAGVRRIVAVTGSEATAAHELNKE 756

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYR-------------KLQLIHAKRKLQLNVEDLS 787
                   LK++   +   +  + E  +             +        +  L  E  +
Sbjct: 757 LELRFNKALKLTGSELSKEIVALLETLKSSCISQAVRYNLVEAMKELQSIQRVLAKEVEN 816

Query: 788 CHKIADVNFMSHIISEVDSK----------------ELKSVMDALQKKIQSGIIMLVGIS 831
              +        II E+ SK                 +   +  +Q K     +ML+   
Sbjct: 817 LQILESSKITERIIQELTSKPSELYVDLVNLGSNTTVITDTIKKIQAKSNQTAVMLISPD 876

Query: 832 KE-KKASVLIVVTED--LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           +E  K + + +V +D  +     A        +VL GG GGG+  +AQ  G   +K D+A
Sbjct: 877 EEKGKVTCIGIVPKDSPISKSVAANVWVSKVTEVL-GGKGGGKAEVAQGVGSKLDKIDEA 935

Query: 889 IAGVASFLK 897
           I     F K
Sbjct: 936 ILVARDFAK 944


>gi|302681375|ref|XP_003030369.1| hypothetical protein SCHCODRAFT_82606 [Schizophyllum commune H4-8]
 gi|300104060|gb|EFI95466.1| hypothetical protein SCHCODRAFT_82606 [Schizophyllum commune H4-8]
          Length = 949

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/964 (31%), Positives = 451/964 (46%), Gaps = 93/964 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
           +   +R  F ++FQ  GH  + SS  +P +DPTL+F N+GM  FK +F G   P      
Sbjct: 8   SSRQVRQDFFDYFQSKGHTFVRSSPTVPYDDPTLLFANAGMNQFKPLFLGTVDPHSDLSK 67

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLT+ 
Sbjct: 68  LKRAYNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTEV 127

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY++ ++ D         EA + W    G+  D I+     DNFW M  TGPC
Sbjct: 128 YKLPKDRLYVSYFEGDPKNGLEPDLEAKQYWLD-IGVPEDHILPGNAKDNFWEMGATGPC 186

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+QF +++      LP   +DTGMG
Sbjct: 187 GPCSEIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQFNREDDGSLKPLPSKHVDTGMG 245

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHLR 280
            ER+ +V+Q+K +NYD D+F  + Q  +++TG+           +      +RV+ DH+R
Sbjct: 246 FERLVSVVQDKRSNYDTDVFSPIFQRVQELTGVRPYQGLFGPDDKDGIDTAYRVVADHVR 305

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAYP 338
           + +F ++DG +P N GRGYVLRRI+RR   YAR  LG T       L+P +   MG  +P
Sbjct: 306 TLTFALSDGGVPNNVGRGYVLRRILRRGARYARKKLGVTIGSFFSSLMPVVVEHMGDVFP 365

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396
           E+ +    I+E L  E+E F +TLDRG  L D       +  +  LNG   ++LYDT+G 
Sbjct: 366 EITKKLPEIKEILDEEEESFARTLDRGEKLFDQYAKRAKEQNLKELNGKDVWRLYDTYGF 425

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +    GL GI+   F  A    +  ++A      +   +     +        
Sbjct: 426 PVDLTTLMAEELGL-GINEKEFEDAQAWSKEASKATQNKDAATVVKLDVHDIA------- 477

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEV 513
                        K                 +++ VK I      ++            +
Sbjct: 478 ----------ALEKGGDVAKTDDSSKYNQGNITATVKKIFHNKAFLDSTSDIPEATSFGI 527

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T FYAE+GGQ  DTG  + DG+        +   G  +H   ++ G L     +V 
Sbjct: 528 ILDRTNFYAESGGQENDTGGIVIDGVAEFEVTDVQVYNGYVLHVGHLKYGDLEVGNEVVA 587

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           + D   R  L  NH+ATH+L++ L  +LG H+ Q GS + P  LRFD +H   I   EL 
Sbjct: 588 SYDELRRWPLRNNHTATHILNYCLREVLGDHIDQKGSLVAPTKLRFDFSHKAQIPLPELT 647

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVS-----------V 681
            IE    D I +N+ V  + M+ + A    G  A+ G  Y D VRVVS           +
Sbjct: 648 QIESMSVDWIKKNVKVYGKDMDLKSAQKIPGLRAVFGETYPDPVRVVSLEFSVDEISADI 707

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
           E       S   CGGTHV+ TG+I    I  ES I  GIRRI A+TG  A       D  
Sbjct: 708 ENPKWRSTSIEFCGGTHVAKTGDIKHFVITEESGIAKGIRRIVAVTGHEAAEATRLADAL 767

Query: 742 LKSLASFLKVSQGNVVGRVE-----------------EIWEEY----RKLQLIHAKRKLQ 780
              L    K++       ++                 ++ +      +       +R+  
Sbjct: 768 QIKLDQIEKMTGKEADAAIKAFTVTLNQADTSIIRKSQLKDRLASVRKAFDKQVKEREAA 827

Query: 781 LNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           LN + L               F+S +  + ++K L++V+   +K  +   + L     E 
Sbjct: 828 LNKDALDQFRTFFEQTPGAPAFVSILHVDGNAKLLQNVVAQARKAGK--AVYLFSPDPEG 885

Query: 835 -KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K + +  V   L ++  +A   A     VL GG  GG+   AQ  G N ++ D A+   
Sbjct: 886 TKVAHVNFVPPALREKGLDAKTWAAKVTDVL-GGKAGGKEDSAQGVGTNVDRVDDALKAA 944

Query: 893 ASFL 896
             ++
Sbjct: 945 GQYV 948


>gi|152966976|ref|YP_001362760.1| alanyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
 gi|205830072|sp|A6WCF7|SYA_KINRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151361493|gb|ABS04496.1| alanyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
          Length = 893

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/921 (34%), Positives = 490/921 (53%), Gaps = 62/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L+FF++  H ++PS+SL+  +DP+LMFT +GMVPF    T Q    Y+  
Sbjct: 1   MQTAEIRRRWLDFFERKEHTVVPSASLV-SSDPSLMFTVAGMVPFIPYLTAQVPAPYKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D+D VG+T RH TFF+M GNFSFG YFK  A+  AW+LLT      
Sbjct: 60  TSVQKCLRTL----DIDEVGKTTRHGTFFQMNGNFSFGDYFKREAVAFAWELLTTPEADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL+ TVY +D+EAF+LW++  G+ A++I R    DN+W+  + GP GPCSEI+
Sbjct: 116 GLGFDPERLWTTVYLDDDEAFQLWRE-VGMPAERIQRRGKADNYWNTGQPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           FD+G    G   G   + +RYIEIWNLVFMQ++      + +      LP  +IDTGMGL
Sbjct: 175 FDRGPAY-GAEGGPEADEDRYIEIWNLVFMQYQLSAVRTKVDFDVEGELPAKNIDTGMGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A + Q   N Y+ID  + ++  + +++G +Y     + V  RV+ DH+RS+  LI D
Sbjct: 234 ERVAFLKQGVDNMYEIDEVRPVLDKAAELSGRRYGAVHEDDVRMRVVADHVRSALMLIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEG GYVLRR++RRA+   RLLG  EP + HLLPA    M ++YP+L      I 
Sbjct: 294 GVTPGNEGAGYVLRRLVRRAVRAMRLLGVEEPALPHLLPASMEVMSASYPQLRSDFERIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E++ F +TL  G  + +  ++         L+G+ AF L+DT+G P+D+  ++  
Sbjct: 354 AVAYAEEDAFRRTLVSGTAIFETAVAQTKAAGGSSLSGERAFALHDTYGFPIDLTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYG-ATQFIGYDLLR 464
             G  G+D   F   + EQ  RA+A +    +G  +  I+ S  E+      F GY+   
Sbjct: 414 EAG-VGVDEPGFRALMAEQVGRAKADAKAKKTGGVDLAIYRSTLEQLPAPVVFTGYE--- 469

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + +  ++Q G     A +G  VEVV D+TPFYAE 
Sbjct: 470 --------------------AAAGEARISVVLQGGVSTPSAPAGTDVEVVLDRTPFYAEG 509

Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G         L ++DVQ+   G++VH   V  G L    ++   +D   RR +
Sbjct: 510 GGQLADHGTVTTTSGAVLAVSDVQQPVRGLYVHKGTVTSGELVAGDAVHAVVDAGRRRSI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           S  H+ATHL+H  +   LG   +Q GS   P  +RFD   +  +    ++ IE  VN+ I
Sbjct: 570 SRAHTATHLVHQVVREHLGDTATQAGSQNAPGRMRFDYRSTAQVAGDVVRDIEAVVNERI 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +L V   +M+RE A+ SGA AL G KY ++VRVVS+        S  LCGGTH  ++ 
Sbjct: 630 HDDLEVSAAVMDRESALNSGAMALFGEKYGEKVRVVSIGE----DWSKELCGGTHTLTSQ 685

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ L+ IVSESSI +G RRIEA+ G  A   L  +   +  L   +K     +  R+  +
Sbjct: 686 QVGLVSIVSESSIGSGARRIEALVGADAFDFLTREHLLVNQLTEVVKARPEELPDRIGAL 745

Query: 764 WEEYRKLQLIHAKRKLQLNVE---DLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQK 818
                  +   A+ +    +     ++   +    V  ++H    V + +L++++  ++ 
Sbjct: 746 LTRLGDAEKEIARLRGGQVLALAPTIAAKPVDKFGVRVVTHDAGPVSADDLRTLVLDVRS 805

Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++      ++ + G++K++   V+    E       A +L R +AK LGGGG GG+  +A
Sbjct: 806 RLGEERPSVVAVAGVAKDRPVVVVATNAEARRWGVKAGELVRTAAKTLGGGG-GGKDDLA 864

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG + +K   A+ G+  F+
Sbjct: 865 QGGGQDPSKVPAALQGIEDFV 885


>gi|240278873|gb|EER42379.1| alanyl-tRNA synthetase [Ajellomyces capsulatus H143]
          Length = 961

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/965 (31%), Positives = 465/965 (48%), Gaps = 95/965 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       +  
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA +LW    G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+
Sbjct: 196 EIHYDRIGA-RNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L +   ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342
            I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG  L +     +       L+G   ++LYDT G P+D+
Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGSGKLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   RGL        N   EE R +++  S G G  T + +  ++ +          
Sbjct: 435 TRLMAEERGLTID-----NAEFEEARLKSKEASKGQGKRTADVVKLTVHDLG-------- 481

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQ 517
                      D               ++S +KAI    + V+       G++  ++ D+
Sbjct: 482 ------LLETMDDVPKTNDDAKFGRGNITSQIKAIYYNKKFVDSTKDIPQGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  I DG      +  +   G  +H   ++ G      S++   D 
Sbjct: 536 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYGGYILHTGFMKYGSFNVNDSVIAEYDE 595

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   ++ ++L+ IE 
Sbjct: 596 LRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIER 655

Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V  + +        SG  A+ G  Y D VRVVSV               
Sbjct: 656 ISTDYIRQNCAVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 715

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR----------SHL 735
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A             L
Sbjct: 716 WKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 775

Query: 736 MGQDEKL----KSL-ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776
              ++      K + A  L+V    +    V +           +++ E  +  Q + +K
Sbjct: 776 RRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQKLESK 835

Query: 777 RKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834
           + L                + +  +    + K L   ++ ++ K+Q   + +    KE  
Sbjct: 836 KALDAITGYFEAPENKVASHLVMQLPISANPKALSDSLNFVKTKMQDKSVYVFAADKEAG 895

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K      V + L +      D A   + ++ GG  GG+  ++   G    K D+AI    
Sbjct: 896 KVVHGCHVAQSLSEQGATPNDWANAVSSIV-GGRAGGKAPISIGNGTEAEKLDEAIKAAT 954

Query: 894 SFLKK 898
            +L+K
Sbjct: 955 EYLEK 959


>gi|326904170|gb|EGE51103.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis W-148]
          Length = 903

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/935 (34%), Positives = 476/935 (50%), Gaps = 79/935 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF---SFGGYFKERAIQLAWDLLTKE- 117
           T++QKC+R      D+D VG T RH+TFF     +     G YFK  AI+LAW LLT   
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFF----RWPAIQLGDYFKRGAIELAWALLTNSL 111

Query: 118 ----FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
               + LD  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP S
Sbjct: 112 AAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSS 171

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTG 227
           EI++D+G            E  RY+E+WNLVFMQ E+     +        LP+ +IDTG
Sbjct: 172 EIYYDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTG 230

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSF 284
           MG+ER+A VLQ+  N Y+ DL + +I    +V    Y      + V +R+I DH R+++ 
Sbjct: 231 MGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAI 290

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+   
Sbjct: 291 LIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADF 350

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
             I     +E+  F +TL  G  L + V S        +L+G  AF L+DT+G P+++  
Sbjct: 351 ERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTL 410

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           ++    GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D 
Sbjct: 411 EMAAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDE 469

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVV 514
           LR                         + +  I   G+ V          A  GQ+VE+V
Sbjct: 470 LRS-----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELV 506

Query: 515 FDQTPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            D+TP YAE+GGQ+ D G   G    +  R  +TDVQK A+ ++VH   VE G      +
Sbjct: 507 LDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDT 566

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++  +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  
Sbjct: 567 VIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDD 626

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +   +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S
Sbjct: 627 QRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFS 682

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LK
Sbjct: 683 LELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLK 742

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EV 804
           V    V  RV  + E  R  +    + ++               +I +V  ++  +S  +
Sbjct: 743 VPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGM 802

Query: 805 DSKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAK 861
            + +L+S++  ++ K+ S   ++ L+   + +     +       D    A DL +  A 
Sbjct: 803 TAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAV 862

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +  G GGG+  +AQ  G N    D A+  V S +
Sbjct: 863 AVE-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 896


>gi|108808831|ref|YP_652747.1| alanyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|122382877|sp|Q1C420|SYA_YERPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|108780744|gb|ABG14802.1| alanyl-tRNA synthetase [Yersinia pestis Antiqua]
          Length = 738

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/744 (45%), Positives = 461/744 (61%), Gaps = 52/744 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SS+L+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG      +  + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVADVTGATD--LSSKSLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLT-GDTLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR       S      + SL     A+QF GYD ++       
Sbjct: 420 -VDEAGFEQAMEAQRRRARE------SSGFGADYNSLIRVDSASQFSGYDHVQQH----- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E  +G++  VV ++TPFY E+GGQ+GD 
Sbjct: 468 ------------------ATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +TD QK       H  I+  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFSVTDTQKYG-QAIGHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESS---IRAGIRRIEAITGQRAR 732
           +ES        I R  AI G  A 
Sbjct: 684 TESGSNLPGCTILRNLAIAGFSAF 707


>gi|269126369|ref|YP_003299739.1| alanyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268311327|gb|ACY97701.1| alanyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 889

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/932 (34%), Positives = 488/932 (52%), Gaps = 83/932 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +   FL FF++ GH ++PS+SL+   DPTL+   +GMVPFK  F GQ  P    +
Sbjct: 1   MESAEVARRFLAFFEERGHTVVPSASLVAE-DPTLLLVPAGMVPFKPYFLGQRTPPAPRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+ QKCVR      D+D VG+T RH TFF+MLGNFS G YFKE AI  AW+LLT+     
Sbjct: 60  TSAQKCVRT----PDIDEVGKTTRHATFFQMLGNFSIGDYFKEGAIPYAWELLTRPVSDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +L++TVY +D+EA  +W +  G+  ++I R    DN+W M   GP GPCSEI+
Sbjct: 116 GFGFPEDKLWVTVYLDDDEAADIWHRKVGIPVERIQRRGLADNYWHMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+E+WNLVFMQ +      + +      LP  +IDTGMGL
Sbjct: 176 YDRGPAY-GREGGPIADEDRYLEVWNLVFMQEQLSAVRSKTDFDVAGPLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ERMA +LQ   N Y+ D  + ++  + ++TG +Y  +    V+ RV+ DH+R+ + L+AD
Sbjct: 235 ERMAAILQGVDNIYETDTLRRILDKAAELTGTRYGRDRRADVSLRVVADHVRAGTMLVAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKLLI 347
           G++PANEGRGYVLRR++RRA+   RLLG  +  LM  L       MG  Y ELI     I
Sbjct: 295 GVIPANEGRGYVLRRLLRRAIRNLRLLGGQDAGLMHELTAVAIAAMGEQYTELISTAANI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
              + +E+ERF +TL  G  + D  ++   +   ++L+G  AF L+DT+G P+D+  ++ 
Sbjct: 355 HAVIDAEEERFLQTLRTGTAIFDAAVAETKRAGKQVLSGSQAFTLHDTYGFPIDLTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEK-YGATQFIGYDLL 463
             +GL+ +D   F + LEEQR RA+A +    +G  +  +   L ++  G   F+GY  +
Sbjct: 415 AEQGLS-VDEEGFRRLLEEQRQRAKADAAAKKTGNLDVSVLGELLDRAGGKVDFLGYHDV 473

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G                        + V  ++  G  V  A +G +VEVV D+TPFYAE
Sbjct: 474 TG-----------------------EARVVGLLVNGASVPAAGAGTEVEVVLDRTPFYAE 510

Query: 524 AGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQL D G    G G  +++ DVQ    G+ VH   V  G  +   +    ID + RR 
Sbjct: 511 GGGQLADQGRIRTGGGAEIEVHDVQSPLPGLIVHRGKVRAGEAQAGDTAFAEIDVERRRA 570

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +S +H+ATH++H      LG   +Q GS  +P   RFD T + P+  + L+ +ED VN +
Sbjct: 571 ISRSHTATHMVHAGFRRALGESAAQAGSENSPGRFRFDFTSAGPVPPSVLRDVEDEVNAV 630

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  +L V     + E A A GA AL G KY D VRVV V     G +S  LCGGTHV+ +
Sbjct: 631 LVDDLDVRAFTTSIEQARAMGALALFGEKYGDEVRVVEV-----GDYSRELCGGTHVARS 685

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G++ L+ ++ ESSI AG+RRIEA+ G  A   L  +   +  L+  LKV +  +  R+  
Sbjct: 686 GQLGLIKVLGESSIGAGVRRIEALVGIDAFRFLARESVLVSQLSEQLKVRKEELPERIST 745

Query: 763 IWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDAL 816
           +    R+ +    + +    +        S   I  + +++H       + +L+ +   +
Sbjct: 746 VIGRLREAEKELERLRSAQVLAVAGSLADSAKDIDGIAYVAHRAPDGTTADDLRKLALDV 805

Query: 817 QKKIQS-GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR----------LSAKVLG 864
           + ++ S   ++L+    + +  V++ VTE   +R   A  L                 L 
Sbjct: 806 RGRLASRPAVVLITGVPKDRPVVVVAVTEGARERGLKAGALVGVAAKALGGGGGGKDDLA 865

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                      Q GG +    D+A+A V   +
Sbjct: 866 -----------QGGGADPTAIDKALAAVEHAV 886


>gi|325090131|gb|EGC43441.1| alanyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 961

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/965 (31%), Positives = 465/965 (48%), Gaps = 95/965 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       +  
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA +LW    G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+
Sbjct: 196 EIHYDRIGA-RNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L +   ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342
            I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG  L +     +       L+G   ++LYDT G P+D+
Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGSGKLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   RGL        N   EE R +++  S G G  T + +  ++ +          
Sbjct: 435 TRLMAEERGLTID-----NAEFEEARLKSKEASKGQGKRTADVVKLTVHDLG-------- 481

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQ 517
                      D               ++S +KAI    + V+       G++  ++ D+
Sbjct: 482 ------LLETMDDVPKTNDDAKFGRGNITSQIKAIYYNKKFVDSTKDIPQGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  I DG      +  +   G  +H   ++ G      S++   D 
Sbjct: 536 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYGGYILHTGFMKYGSFNVNDSVIAEYDE 595

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   ++ ++L+ IE 
Sbjct: 596 LRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIER 655

Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V  + +        SG  A+ G  Y D VRVVSV               
Sbjct: 656 ISTDYIRQNCVVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 715

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR----------SHL 735
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A             L
Sbjct: 716 WKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 775

Query: 736 MGQDEKL----KSL-ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776
              ++      K + A  L+V    +    V +           +++ E  +  Q + +K
Sbjct: 776 RRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQKLESK 835

Query: 777 RKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834
           + L                + +  +    + K L   ++ ++ K+Q   + +    KE  
Sbjct: 836 KALDAITGYFEAPENKVASHLVMQLPISANPKALSDSLNFVKTKMQDKSVYVFAADKEAG 895

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K      V + L +      D A   + ++ GG  GG+  ++   G    K D+AI    
Sbjct: 896 KVVHGCHVAQSLSEQGATPNDWANAVSSIV-GGRAGGKAPISIGNGTEAEKLDEAIKAAT 954

Query: 894 SFLKK 898
            +L+K
Sbjct: 955 EYLEK 959


>gi|158298580|ref|XP_318757.4| AGAP009701-PA [Anopheles gambiae str. PEST]
 gi|157013952|gb|EAA14564.4| AGAP009701-PA [Anopheles gambiae str. PEST]
          Length = 946

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/965 (30%), Positives = 454/965 (47%), Gaps = 106/965 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
             S IR+ FL+FF++  H  + SSS+IP +DPTL+F N+GM  FK IF G   P      
Sbjct: 6   TASQIRSIFLDFFKEKEHLYVHSSSVIPLDDPTLLFANAGMNQFKPIFLGTVDPNSDMAK 65

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+ 
Sbjct: 66  WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTER 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        + D E  ++W K+ G+  + I+  +  DNFW M ETGPC
Sbjct: 126 LKLPKERLYVTYFGGHPESGLEPDLECREIWLKL-GVKEEHILPGSMKDNFWEMGETGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           + +    +EIWNLVF+Q+ ++      +LPK  ID GMG
Sbjct: 185 GPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREQDSSLKLLPKKHIDCGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
            ER+ +V+Q+K +NYD D+F  L  A ++           G        + +RV+ DH R
Sbjct: 244 FERLVSVIQDKRSNYDTDVFMPLFDAIQKGTGAAAYQGRVGADDSDGVDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +PE
Sbjct: 304 TITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVDTVVQLLGETFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I+  +  E+++F KTL RG  LL+  ++ LG  +++ GDVA++LYDT+G P+D
Sbjct: 364 VRKDPQHIKNVINEEEQQFLKTLTRGRNLLNRTIAKLGNSKVIPGDVAWRLYDTYGFPID 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQF 457
           +   +   + +  ID+  + +A  E    ++       +     +     L+E+      
Sbjct: 424 LTLLMAEEKQMT-IDMEGYEKAKHESYIISQGKEKSKTATIDLDVHGISELQERKVP--- 479

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                     F    +          +    +  + A+      VEE  +GQ+  V+ D+
Sbjct: 480 -----ATDDSFKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDR 534

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE+GGQ+ D G  +         +V      G +V H  V  G LR    +   +D
Sbjct: 535 TNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMD 594

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R+    NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +T  ++   E
Sbjct: 595 VVRRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSAMTIEQVAEAE 654

Query: 637 DNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684
               +++ +N+ V  +  N        G  ++    Y D VRV+S              E
Sbjct: 655 RLTREVVKRNVQVYAKEANLAVAKTIRGLRSVFDEVYPDPVRVISFGVPVEQLEADPTGE 714

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G ++S   CGGTH+  +G ++   I +E +I  GIRRI A+TG  A   L   +   + 
Sbjct: 715 AGVINSVEFCGGTHLHQSGHMVDFVITTEEAIAKGIRRIVALTGPEALKALKKTELLEQE 774

Query: 745 LASFLKVSQG---------NVVGRVEEIWEE-----------------YRKLQLIHAKRK 778
           L+  L+ +             V ++ E+ ++                  + L+     ++
Sbjct: 775 LSK-LRATIDGDKEGREAKEHVKKIIELTDDVSQATIPYVKKDELRTVLKGLKKALDDKE 833

Query: 779 --LQLNVEDLSCHKI-------ADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLV 828
              +  V      K         D  F+   +  +++ K L S +  ++K       + +
Sbjct: 834 RVARAAVASGVVEKAKELSQAHKDAPFLVQRLEALNNTKALDSALKEVRKVNPEQSALFL 893

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                                  A +     A V+ GG GGG+P  AQ+ G N +KAD+ 
Sbjct: 894 S-------------------GLKANEWISHIAPVM-GGKGGGKPESAQASGGNFDKADEI 933

Query: 889 IAGVA 893
           +    
Sbjct: 934 LELAR 938


>gi|164660846|ref|XP_001731546.1| hypothetical protein MGL_1729 [Malassezia globosa CBS 7966]
 gi|159105446|gb|EDP44332.1| hypothetical protein MGL_1729 [Malassezia globosa CBS 7966]
          Length = 963

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/967 (31%), Positives = 464/967 (47%), Gaps = 98/967 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            + +R+TFL+FF++  H  +PSSS +P +DPTL+F N+GM  +K+IF G   P       
Sbjct: 14  AAKVRSTFLDFFREKEHTFVPSSSTVPYDDPTLLFANAGMNQYKSIFLGTVDPSSEFSKL 73

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW LLT+ +
Sbjct: 74  RRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAISFAWKLLTEVY 133

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   RLY+T ++ D         E  ++W+K  G+  ++I++    DNFW M  TGPCG
Sbjct: 134 GLPSDRLYVTYFEGDPKQGLEPDVETLEIWRK-VGVPDERILKGNAKDNFWEMGATGPCG 192

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI FD+           + +    IE+WN VF+QF ++       LP   IDTGMG 
Sbjct: 193 PCSEIHFDRV-GGRNAASLVNMDDPDVIEVWNNVFIQFNREEDGSLRPLPARHIDTGMGF 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ ++LQ+K +NYD D+F  L    +++TG +                 +RV+ DH+R+
Sbjct: 252 ERLVSILQDKRSNYDTDVFMPLFSRIQELTGARPYSGKLGAEDVDGLDTAYRVVADHIRT 311

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P  +GRGYVLRRI+RR   + R             L+P L  +MGS +PE
Sbjct: 312 LTFAISDGCIPDKDGRGYVLRRILRRGTRFVRKYFQVPIGAFFSQLVPTLVEQMGSFFPE 371

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLP 397
           + +    ++  L  E++ F +TLDRG  L +     +       L+G   ++LYDT+G P
Sbjct: 372 ITRKTKELQAILNEEEQSFARTLDRGEKLFEQYANAARTEGRTKLSGADVWRLYDTYGFP 431

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   +   +GL   D   F +A  E +  ++       +   +     L         
Sbjct: 432 VDLTSIMAEEQGLT-FDQAEFEKAQAESKEASKGQGKQQEALAVKLDVHDL--------- 481

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE----AVSGQKVEV 513
                        +             T  + + VKAI Q+ + V +    A +G+   +
Sbjct: 482 --------GHLDADASVPQTNDVFKYDTPSMQAHVKAIFQEHKFVSDSNSLAKAGEPFGI 533

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + DQT  YAE+GGQ  DTG  + DG         + + G  +H   ++ G L     +V+
Sbjct: 534 LLDQTNMYAESGGQQADTGSLVIDGKAEFEVSDVQASNGYVLHIGFLKYGKLSVGDQVVV 593

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           + D   RR L  NH+ TH+L+  L  ILG HV Q GS + P  LRFD +H  P+  +EL+
Sbjct: 594 SYDESRRRPLQNNHTGTHILNFGLREILGDHVDQKGSLVAPSKLRFDFSHKAPVNVSELQ 653

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV-----------SV 681
            IED  N  I +++ V  + M  E+A    G  A+ G  Y + VRVV            +
Sbjct: 654 KIEDISNSFIERDVSVYAKDMVLEEAYKIPGLRAVFGESYPNPVRVVALEFDIDQMAKDL 713

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR------SHL 735
                   S   CGGTHV  TGEI  L +  ES I  GIRRI A+TG  A          
Sbjct: 714 TNPRWRQTSIEFCGGTHVKKTGEIGRLVVTEESGIAKGIRRIVAVTGDEAVAVTATADEA 773

Query: 736 MGQDEKLKSLA------SFLKVSQGNVVG------RVEEIWEEYRKLQLIHAKRKLQLNV 783
             + +++  ++      + LK     +        R +E+   + K++     R      
Sbjct: 774 SKRLDEIDQVSDDVAKEAQLKAFSVELARMDISVVRKDELKARFTKIRKALDTRLKARAA 833

Query: 784 EDLSCHKIA---------DVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            D+   + A         D       +    +SK L+S + A+ +K+   + +    S  
Sbjct: 834 ADVKVAQEAVQTYFNENPDARVYIAQLDTGANSKALQSGV-AVARKLNKSVYLFARESGS 892

Query: 834 KKASVLIV--VTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG--GPNGNKADQA 888
           +K   L    V +D L    +AV   +  ++ L  G GGG+P  AQ    G   +  D+A
Sbjct: 893 EKTKTLYGNFVPKDELERGLDAVSWNKAVSEKL-QGRGGGKPDGAQGQGEGTKAD-VDEA 950

Query: 889 IAGVASF 895
           I    SF
Sbjct: 951 IKLAQSF 957


>gi|109148542|ref|NP_001596.2| alanyl-tRNA synthetase, cytoplasmic [Homo sapiens]
 gi|115502460|sp|P49588|SYAC_HUMAN RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; AltName:
           Full=Renal carcinoma antigen NY-REN-42
 gi|15079238|gb|AAH11451.1| Alanyl-tRNA synthetase [Homo sapiens]
 gi|119572224|gb|EAW51839.1| alanyl-tRNA synthetase, isoform CRA_b [Homo sapiens]
 gi|123981462|gb|ABM82560.1| alanyl-tRNA synthetase [synthetic construct]
 gi|123996297|gb|ABM85750.1| alanyl-tRNA synthetase [synthetic construct]
          Length = 968

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/969 (32%), Positives = 476/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRARG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            ++   S                 +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 478 LEVTDDSPK----YNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N++I     V T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKK 772

Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
            L+   + +K       +V   + ++ E        +++K +L    + L+  ++DL   
Sbjct: 773 CLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|170781160|ref|YP_001709492.1| alanyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|205830026|sp|B0REK2|SYA_CLAMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169155728|emb|CAQ00849.1| alanine tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 885

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/928 (32%), Positives = 471/928 (50%), Gaps = 78/928 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L +F   GH ++PS+SL+  +DPTL+FT +GMVPF    TG     +   
Sbjct: 1   MQTADIRNAWLTYFGDRGHTVVPSASLV-SDDPTLLFTVAGMVPFVPYLTGVVPAPFARA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VGRT RH TFF+M GNFSFG YFKE+AI  AW+LLT      
Sbjct: 60  TSVQKCIRTL----DIEEVGRTPRHGTFFQMNGNFSFGDYFKEQAIAYAWELLTTSEADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                   L++TVY ED+EA + WK+I+GL  ++I  +  + N+W   + GP GPCSEIF
Sbjct: 116 GLGFSPDDLWVTVYHEDDEARQAWKRIAGLPDERIQGLGRDTNYWHTGQPGPAGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230
           FD+G    G   G + + +RY+EIWNLVFMQ+ +     +         P  +IDTGMGL
Sbjct: 176 FDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGAGTGKSDFEILGDLPTRNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A + Q   N Y+ D  + ++  + +++G +Y  +  + V  R++ DH+RSS  L++D
Sbjct: 235 ERVAFIKQGVENMYETDQVRPVLDRAAELSGRRYGADHEDDVRMRIVADHVRSSVMLMSD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGY+LRR+MRR +   RL+G        L PA    M +AYPE+      I 
Sbjct: 295 GVRPSNEGRGYILRRLMRRTVRAMRLMGVDAATFGELFPASRDAMKAAYPEVSDDFDRIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+E F +TL  G  +LD  +  +     E + GD AF L+DT G P+D+  ++  
Sbjct: 355 RLAYAEEETFLRTLSGGTTILDVAVGETKAKGGERIAGDTAFLLHDTFGFPIDLTLEMAE 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D  +F++ + EQR+RA+A +    +   +   +S     G T+F GYD L   
Sbjct: 415 ENGLT-VDREAFDRLMLEQRTRAKADAKSKKTALADLTVYSEFRAAGETRFTGYDELETG 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  ++  G  V+ AV+G   EV+  +T  YAE+GG
Sbjct: 474 -----------------------TTILGLIVGGHSVDHAVAGDIAEVILPETSLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G  +G G  L++ DVQK  +G+  H   V  G +    +    +D   RR  +  
Sbjct: 511 QEADAGSIVGQGFDLEVLDVQKPVKGLISHRVQVRSGEVGVGDAATTIVDADWRRGATQA 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THL+H AL  +LG    Q+GS      +R D   ++ ++ A    IED  N  +  +
Sbjct: 571 HSGTHLVHAALRQVLGQDAHQSGSYNRAGYMRLDFAWNQALSPATRSEIEDIANGAVRDD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L VVTR+M  ++A   GA AL G KY D VRVV +    GG  S  LC GTHVSS+ +I 
Sbjct: 631 LQVVTRVMPIDEAKQLGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVSSSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ +V ESS+ +  RRIE++ G+ A   L  +   +  L S LK  +  +  R+ ++ + 
Sbjct: 687 LINVVGESSVGSTNRRIESLVGREAFQDLAVERAIVSQLTSSLKTPREQLPDRIADLLQN 746

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKI 820
            +  +   A  + Q   +          ++  V  +   +  V  + E++ ++  ++++ 
Sbjct: 747 LKTAERRIADFEAQALQQRVPTLLAQGSRVGSVTLIQESLGSVRSADEVRQLVTLVRERA 806

Query: 821 QSG-IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDL----------ARLSAKVLGGGGG 868
            S  +++ +      K +V++   +   D    A  L                 L     
Sbjct: 807 GSDPVVVALAGDAGGKPTVIVATNQAARDAGAKAGQLARAAAAVLGGGGGGKDDLA---- 862

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
                  Q GG + +   +A+A V   L
Sbjct: 863 -------QGGGSDVSAIGEALAAVRQAL 883


>gi|50310341|ref|XP_455190.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644326|emb|CAG97897.1| KLLA0F02431p [Kluyveromyces lactis]
          Length = 956

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/965 (31%), Positives = 473/965 (49%), Gaps = 91/965 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R+TFL++F+  GH  +PSS +IP +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TAANVRSTFLDYFKSKGHTFVPSSPVIPFDDPTLLFANAGMNQYKPIFLGTVDPSSDFYK 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +  T  QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK 
Sbjct: 70  LKRATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY+T ++ DE        EA  LWK   G+  D I+     DNFW M E GPC
Sbjct: 130 YGIPGDRLYVTYFEGDEKLGLEPDFEARDLWKS-VGVKDDHILPGNAKDNFWEMGEQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           +++    +EIWN VF+QF ++  +    LP   +DTGMG
Sbjct: 189 GPCSEVHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQFNREQDRSLRALPAKHVDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280
            ER+ +VL +  +NYD D+F+ L    +++TG++                 +RV+ DH+R
Sbjct: 248 FERLVSVLHDVRSNYDTDVFEPLFNRIQEITGVRSYTGKFGAEDTDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L   L  ++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSQLSVTLIEQVKDMFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGL 396
           E+ +    + E L  E+  F KTLDRG  L +          D+ L+G   ++LYDT+G 
Sbjct: 368 EVARDPSYLFEILDEEEASFAKTLDRGEKLFEKYAEDALKKADKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID I F +A +E    ++    G   G ++ I  ++ E      
Sbjct: 428 PVDLTELMAEEQGLK-IDTIGFEKAKQESYEASK---KGGKKGASDLIRLNVHEL----- 478

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                       +  D            T  V + +  I    + V+     G++  V+ 
Sbjct: 479 ----------SQLNGDNVAKTDDSSKYGTENVEATILRIYDGEKFVDSMTEIGKQYGVIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + DG      D  +   G   H   +  G L    S++ + 
Sbjct: 529 DKTCFYAEQGGQEFDTGKLVIDGEAEFNVDNVQAYNGYVFHTGSLGDGKLSIGDSIIASY 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +   R  L  NH+ TH+L+ AL  +LG+ V Q GS + P+ LRFD +H + ++  EL  +
Sbjct: 589 EELRRHPLRNNHTGTHILNFALKEVLGNDVDQKGSLVAPEKLRFDFSHKRALSYEELVEV 648

Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E   N+ I  NL      +        S   A+ G  Y D VRVVS+             
Sbjct: 649 EKLSNEKIRDNLTVYYKEVALDLAKTISSVRAVFGETYPDPVRVVSIGKAVEEVLENPTS 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG------ 737
           E+   +S   CGGTHV+ T +I    IV ES I  GIRRI A++G  A            
Sbjct: 709 EEWQKYSIEFCGGTHVAKTSDIKEFVIVEESGIAKGIRRIVAVSGPEAYEVQRIATEFDG 768

Query: 738 -------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                        + +KLK L   L       +++ ++  +  +I +E +      AK++
Sbjct: 769 ELTAVEKLPFSPLKAQKLKELGVRLGQLTISVITKTDLKDKFNKIEKEVKDELKSRAKKE 828

Query: 779 LQLNVEDLS--CHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK-EK 834
           ++  ++D+        + +F    I    ++K +   ++ ++   +   I L   ++ + 
Sbjct: 829 IKQTLDDVKHHFDANKESSFYVKHIDIPTNAKAITEAINHIKTNSKDKSIYLFTCNEPDG 888

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +    +++  +    +   LA+  +  + GG  GG+ ++ Q  G   N  D A+A V 
Sbjct: 889 KVAHGCYISDAAIAQGVDGSSLAKTVSSSI-GGKAGGKGNVFQGMGDKPNGIDSAVAEVE 947

Query: 894 SFLKK 898
           + LK+
Sbjct: 948 ALLKE 952


>gi|255580622|ref|XP_002531134.1| alanyl-tRNA synthetase, putative [Ricinus communis]
 gi|223529283|gb|EEF31254.1| alanyl-tRNA synthetase, putative [Ricinus communis]
          Length = 1025

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/961 (32%), Positives = 453/961 (47%), Gaps = 89/961 (9%)

Query: 4    VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
               +R TF+ FF+   H    SS ++P NDPTL+F N+GM  FK IF G   P       
Sbjct: 83   AKKVRDTFISFFEDKKHVHWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 142

Query: 59   QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI  AW+LLTK +
Sbjct: 143  SRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAIGWAWELLTKIY 202

Query: 119  DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
             L   R+Y T +  DE        EA   W +   L  ++++     DNFW M +TGPCG
Sbjct: 203  KLPADRIYATYFGGDEKAGLAPDAEARDFWLQF--LPPERVLPFGCKDNFWEMGDTGPCG 260

Query: 171  PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
            PC+EI +D+           + +    IEIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 261  PCTEIHYDRVGNRDASQ-LVNNDDPTCIEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGF 319

Query: 231  ERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRS 281
            ER+ +VLQ K +NYD D+F  +  A +Q T         G        + +RV+ DH+R+
Sbjct: 320  ERLTSVLQNKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDVDRVDMAYRVVADHIRT 379

Query: 282  SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
             SF IADG  P NEGR YVLRRI+RRA+ Y    L   E     L+  +   MG  +PEL
Sbjct: 380  LSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNIVVKVMGDVFPEL 439

Query: 341  IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            IQ ++ I E ++ E+  FGKTL +G+         +   ++     AF L+DT+G PLD+
Sbjct: 440  IQNEVRIREIIKEEEASFGKTLLKGIEKFKKAAQEVQ-GKVSCLQDAFVLWDTYGFPLDL 498

Query: 401  MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             Q +   RGL  +D+  FN A++E R R+R        G        +     AT     
Sbjct: 499  TQLMAEERGLW-VDVEGFNNAMDEARERSRNAQNKQAGG-------DIIMDADAT----- 545

Query: 461  DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                 S   K+   V              S++KAI    E +    S  +V +V + T F
Sbjct: 546  -----SALHKKGVSVTDDSYKFIWFQDHESVIKAIYTGTEFLGSTTSSNEVGIVLESTSF 600

Query: 521  YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQN 579
            YAE GGQ+ DTG   G     Q+++VQ     +    ++            ++  +DY  
Sbjct: 601  YAEQGGQIFDTGSLEGTFGSFQVSNVQIFGGFVVHIGSLTRAAPRLSVGDKVICKVDYDR 660

Query: 580  RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
            R  ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KP+  A L+ IE  V
Sbjct: 661  RTLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPALLRKIESIV 720

Query: 640  NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGG 687
            N+ I   L V  +     +A   +G  A+ G  Y D VRVV++             ++  
Sbjct: 721  NEQIKAELEVSAKEATLSEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWS 780

Query: 688  VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-----GQDE-- 740
              S+ LCGGTH+S+T E     ++SE  I  G+RRI A+T   A   +       Q+   
Sbjct: 781  SISAELCGGTHISNTKEAKAFALLSEEGIAKGVRRITAVTTDGAFKAMELASLLEQEADE 840

Query: 741  -------KLKSLASFLKVSQG----------NVVGRVEEIWEEYRKLQLIHA----KRKL 779
                    L+   + LK              ++  ++  + +E RK Q   +    ++ +
Sbjct: 841  ISKTEGSLLEKKVASLKSRVDSAPIPAAKKFDIRTKISALQDEVRKAQKKISEENMQKAV 900

Query: 780  QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            ++  E           F    +   +D+  ++  +  + +K     ++        K  V
Sbjct: 901  KIATEMAEVAASEGKQFCISRVDVGLDAAAVREAVSKVLQKKGLSAMVFSIDETTNKVVV 960

Query: 839  LIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               V E  D   +    +    + K L G  G G+  +A   G  G   D A+   A F 
Sbjct: 961  CAGVAEKGDKSKQLEVSEWLTAALKPLNGRCGKGKGGLATGQGTEGVHLDAAMNLAAEFA 1020

Query: 897  K 897
            +
Sbjct: 1021 Q 1021


>gi|148272984|ref|YP_001222545.1| alanyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|205830025|sp|A5CRZ5|SYA_CLAM3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|147830914|emb|CAN01858.1| alaS [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 885

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/928 (32%), Positives = 472/928 (50%), Gaps = 78/928 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L +F   GH ++PS+SL+  +DPTL+FT +GMVPF    TG     +   
Sbjct: 1   MQTADIRNAWLTYFGDRGHTVVPSASLV-SDDPTLLFTVAGMVPFVPYLTGVVPAPFPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VGRT RH TFF+M GNFSFG YFKE+AI  AW+LLT      
Sbjct: 60  TSVQKCIRTL----DIEEVGRTPRHGTFFQMNGNFSFGDYFKEQAIAYAWELLTTSEADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                   L++TVY ED+EA + WK+I+GL  ++I  +  + N+W   + GP GPCSEIF
Sbjct: 116 GLGFSPDDLWVTVYHEDDEARQAWKRIAGLPDERIQGLGRDTNYWHTGQPGPAGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230
           FD+G    G   G + + +RY+EIWNLVFMQ+ +     +         PK +IDTGMGL
Sbjct: 176 FDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGAGTGKSDFEILGDLPKKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A + Q   N Y+ID  + ++  + +++G +Y  +  + V  R++ DH+RSS  L++D
Sbjct: 235 ERVAFLKQGVENMYEIDQVRPVLDRAAELSGRRYGADHEDDVRMRIVADHVRSSLMLMSD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGY+LRR+MRR +   RL+G        L PA    M +AYPE+      I 
Sbjct: 295 GVRPSNEGRGYILRRLMRRTVRAMRLMGVDAATFGELFPASRDAMKAAYPEVSDDFDRIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+E F +TL  G  +LD  +  +     E + GD AF L+DT G P+D+  ++  
Sbjct: 355 RLAYAEEETFLRTLSGGTTILDVAVGETKAKGGERIAGDTAFLLHDTFGFPIDLTLEMAE 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D  +F++ + EQR+RA+A +    +   +   +S     G T+F GYD L   
Sbjct: 415 ENGLT-VDREAFDRLMLEQRTRAKADAKSKKTALADLTVYSEFRAAGETRFTGYDELETG 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  ++  G  V+ AV+G   EV+  +T  YAE+GG
Sbjct: 474 -----------------------TTILGLIVGGRSVDHAVAGDIAEVILPETSLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G  +G G  L++ DVQK  +G+  H   V  G +    +    +D   RR  +  
Sbjct: 511 QEADAGSIVGQGFDLEVLDVQKPVKGLISHRVQVRSGEVGVGDAATTVVDADWRRGATQA 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THL+H AL  +LG    Q+GS      +R D   ++ ++S     IED  N  +  +
Sbjct: 571 HSGTHLVHAALRQVLGQDAHQSGSYNRAGYMRLDFAWNQALSSETRSEIEDIANGAVRDD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L VVTR+M  ++A   GA AL G KY D VRVV +    GG  S  LC GTHVSS+ +I 
Sbjct: 631 LRVVTRVMPIDEAKQLGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVSSSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ +V ESS+ +  RRIE++ G+ A   L  +   +  L S LK  +  +  R+ ++ + 
Sbjct: 687 LINVVGESSVGSTNRRIESLVGREAFQDLAVERAIVSQLTSTLKTPREQLPDRIADLMQN 746

Query: 767 YRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEV-DSKELKSVMDALQKKI 820
            +  +   A  + Q   + +        ++  V  +   +  V  + E++ ++  ++++ 
Sbjct: 747 LKTAERRIADFEAQALQQRVPALLAQGSRVGAVTLIQESLGAVRSADEVRQLVTLVRERA 806

Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDL----------ARLSAKVLGGGGG 868
            S  +++ +      K +V++   +   D    A  L                 L     
Sbjct: 807 GSEPVVVALAGDAGGKPTVIVATNQAARDAGAKAGQLARAAAAVLGGGGGGKDDLA---- 862

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
                  Q GG + +    A+  V   L
Sbjct: 863 -------QGGGSDVSAIGDALTAVRQAL 883


>gi|239917773|ref|YP_002957331.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|281413733|ref|ZP_06245475.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|239838980|gb|ACS30777.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
          Length = 903

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/929 (34%), Positives = 477/929 (51%), Gaps = 75/929 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +  FF+  GH ++PS+SL+   DP+L+FT +GMVPF   F G++ P    V
Sbjct: 1   MKSQEIARRWTAFFESRGHRVVPSASLVSP-DPSLLFTVAGMVPFIPYFLGEQTPPSPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R      D++ VG+T RH TFF+M GNFSFG YFKE AI +AW+LLT      
Sbjct: 60  VSVQKCIRTA----DIEEVGKTVRHGTFFQMCGNFSFGDYFKETAIPMAWELLTSSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++TVY ED+EA ++W++  G+  ++I R+  +DN+W+  + GP GPCSEIF
Sbjct: 116 GFGLDPERLWVTVYREDDEAERIWREDVGVRPERIQRMGKDDNYWNTGQPGPGGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+G    G   G + +  RYIEIWNLVFMQ+       + +      L   +IDTG+GL
Sbjct: 176 YDRGPAY-GVDGGPAADDTRYIEIWNLVFMQYRLSAVRSKDDFDIAGELEHKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281
           ER+A +LQ   N Y+ D  + ++  + Q+ G  Y           ++ V  R++ DH+RS
Sbjct: 235 ERLAMILQGVENMYETDQVRPVLDRAAQLAGRAYTSTEDPADPHYDDDVRLRMVADHVRS 294

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LI+DG+ P NEGRGYVLRR++RR +   RL+G TEP+   LLP     M   YP + 
Sbjct: 295 ALMLISDGVRPGNEGRGYVLRRLIRRVVRALRLMGVTEPVFPELLPVSRDAMKGTYPVVA 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDI 400
                I     +E++ F +T+  G   LD  +         + G  AF+L+DT+G P+++
Sbjct: 355 DEFERISRIAYAEEKAFLRTIAAGTARLDAAVGQARSAGGGIAGPDAFELHDTYGFPIEL 414

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             +I    G   +D   F   + EQR RARA +    SG T+   +      G T F GY
Sbjct: 415 TLEIAEEAG-VAVDEAGFRALMAEQRDRARADAKAKKSGHTDTAVYQRLRAEGQTHFTGY 473

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                                    +   S+V+ ++Q GE V  A +G ++E+V D TPF
Sbjct: 474 TE-----------------------HTTESVVRGLLQNGEEVPSAGAGTELELVLDATPF 510

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ  DTG   GDG RL++ DVQ   +G+ VH   V  G +      +  ID Q R
Sbjct: 511 YAESGGQAADTGLITGDGFRLEVLDVQAPVKGLSVHRVKVLDGEVAAGAQALGAIDLQRR 570

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                 HS THL+H AL  ILG   +Q+GS      LRFD   ++ +++     +ED VN
Sbjct: 571 LDGEKAHSGTHLVHAALHQILGPEATQSGSFNKEGYLRFDFRWAEALSAGARSEVEDVVN 630

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  +  V+T+ M+ E+A A GA +L G KY DRVRVV +     G  S  LCGGTHV 
Sbjct: 631 IAIRDDHTVLTQEMSLEEARALGAMSLFGEKYGDRVRVVEI----DGAWSRELCGGTHVG 686

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            T +I  L ++ E S+ +G RR+EA+ G  +  HL  +   +  L+   K     +  R+
Sbjct: 687 RTAQIGSLTLLGEQSVGSGNRRVEALVGLDSFRHLAAERTLVSELSEMFKAPAEELKDRI 746

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA----------DVNFMSHIISEVDSKELK 810
               +  +  +   A+ + Q                       V  ++H   +V   +L+
Sbjct: 747 GATLDRLKAAEKQVAELRAQALQAQAGQLAGQAQDVTTSGGTSVRVLAHHAGDVAGDQLR 806

Query: 811 SVMDALQKKIQSG--------IIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAK 861
           S+   L+ +I+S         +++ +    + +  V++   E        A  + + +  
Sbjct: 807 SLALDLRARIESAGGNAAGTPVLVALTAEAKGRPLVVVATNEAARAAGLKAGAMVKTATG 866

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           VLGGGG GG+  +AQ GG +  +   A+ 
Sbjct: 867 VLGGGG-GGKDDVAQGGGQDVTRVGDALD 894


>gi|62897207|dbj|BAD96544.1| alanyl-tRNA synthetase variant [Homo sapiens]
          Length = 968

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/969 (32%), Positives = 476/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRARG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            ++   S                 +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 478 LEVTDDSPK----YNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N++I     V T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKK 772

Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
            L+   + +K       +V   + ++ E        +++K +L    + L+  ++DL   
Sbjct: 773 CLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQFIDSNPNQPLVILEMESGATAKALNEALKLFKMHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|91084029|ref|XP_966465.1| PREDICTED: similar to alanyl-tRNA synthetase [Tribolium castaneum]
 gi|270006700|gb|EFA03148.1| hypothetical protein TcasGA2_TC013061 [Tribolium castaneum]
          Length = 965

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/969 (31%), Positives = 478/969 (49%), Gaps = 84/969 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
            +   +R  ++ FF++  H+ + SSS IP +DPTL+FTN+GM  FK IF G   P     
Sbjct: 5   MSAKDVRNAYINFFKEKNHDYVHSSSTIPLDDPTLLFTNAGMNQFKPIFLGTVDPNSDLA 64

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
                   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LTK
Sbjct: 65  KLTRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTK 124

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L   RLY+T +        + D E  ++W  + G+    ++  +  DNFW M ETGP
Sbjct: 125 RLHLPGDRLYVTYFGGDKAAGLEPDNECKQIWLGL-GVPESHVLPGSMKDNFWEMGETGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ FD+           +++    +EIWNLVF+Q+ +++      LPK  ID G+
Sbjct: 184 CGPCSELHFDRI-GGRDVPELVNQDDPDVLEIWNLVFIQYNRESDGSLKFLPKKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +++Q K +NYD DLF  L  A ++ TG    G            + +RV+ DH 
Sbjct: 243 GLERLVSIMQNKRSNYDTDLFLPLFDAIQKGTGAPPYGGKIGDADKDGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +P
Sbjct: 303 RTITIALSDGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFSTLVNTVVEILGDTFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I +T+  E+E+F KTL RG  LL+  ++ LG  + L GDVA++LYDT+G P+
Sbjct: 363 EVCKDPQSIIDTINEEEEQFLKTLSRGRNLLNRTITKLGDSKTLPGDVAWRLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL  +D+  + +     +  A+  S G GSG  + I   +   +  T+  
Sbjct: 423 DLTQLMAEEKGL-NVDMAVYEE----SKKLAQIASQGKGSGVEDTINLDV---HAITELQ 474

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
              +       K +                 S V A+    + VE+  +GQ+  ++ D+T
Sbjct: 475 NLGVPPTDDAPKYNYIAGSGINEEYKFELCHSTVIALRHNKQFVEQVHTGQECGILLDKT 534

Query: 519 PFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
            FYAE GGQ+ DTG  +  G   ++ +    +  G +V H     G L+    + L +D 
Sbjct: 535 NFYAEQGGQIYDTGYIVKIGDESVEFSVKNVQVRGGYVIHIGSLEGTLKKGDKVALHVDS 594

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +  NH+ TH+L++AL  +LG+   Q GS + PD LRFD T+   +T  ++K+ E 
Sbjct: 595 ARRRLIMNNHTGTHVLNYALRKVLGTEADQRGSLVAPDRLRFDFTNKGAMTVDQVKNTEL 654

Query: 638 NVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
           N  ++I++N  V  +  N        G  A+    Y D VR+VS+               
Sbjct: 655 NSKELISRNDQVFAKESNLAVAKTIRGLRAVFEETYPDPVRIVSIGIPVEKLEVDPFGPA 714

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKL 742
           G   S   CGGTH+  +G I    I SE +I  GIRRI A+TG  A   L      +  L
Sbjct: 715 GDNTSIEFCGGTHLKYSGHIGDFVIASEEAIAKGIRRIVALTGPEATKALKRTEYLENCL 774

Query: 743 KSLASFLKV-----SQGNVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVEDLS-C 788
             +   ++          +V ++ ++ EE        ++K ++ +A + L+ N++D    
Sbjct: 775 NDIKFLVETDKNGEKSKELVKKIVQLTEEVSHAVIPYWKKEEIRNALKTLKKNLDDKERA 834

Query: 789 HKIADVNFMSHIISEV------------------DSKELKSVMDALQKKIQSGIIMLVGI 830
            K A  N +   I E                   ++K L + +  ++    S   + V +
Sbjct: 835 AKAAVANQVVDQIKEFVKANPNLPILVKELKAFSNTKALDTALKQVRSLSPSTSALFVTV 894

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             +  K   L  V+++ +D+   A +  +  A  LGG G GG+   AQ+ G N    ++ 
Sbjct: 895 DPDSNKMFCLASVSKEGVDKGLKANEWVQAVASKLGGKG-GGKADSAQASGSNSVAVEEI 953

Query: 889 IAGVASFLK 897
           +     F +
Sbjct: 954 LQLAKQFAE 962


>gi|293192679|ref|ZP_06609633.1| alanine--tRNA ligase [Actinomyces odontolyticus F0309]
 gi|292820186|gb|EFF79183.1| alanine--tRNA ligase [Actinomyces odontolyticus F0309]
          Length = 902

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/935 (33%), Positives = 482/935 (51%), Gaps = 74/935 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IRT +L++F+K GHE+ PS SL+    P+++FT +GMVPF    TG E   +   
Sbjct: 1   MRTSEIRTRWLDYFEKQGHEIRPSVSLVSPE-PSILFTIAGMVPFIPYITGVEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAINYAWELLTGSRDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R ++T++D+D+EAF +  K  G+    I+R+   +NFW   + GP GPC+E  
Sbjct: 116 KYGLDGDRFWVTLWDQDDEAFGVLTKQIGMDPKHIVRLPREENFWDTGQPGPAGPCAEWH 175

Query: 177 FDQGECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGM 228
           +D+G               G+RY+E+WNLVF Q+ +  +      P      K +IDTG 
Sbjct: 176 YDRGPEYGPEAVGGTVDPGGDRYLEVWNLVFDQYMR-GEGSGKDYPLLGELDKKAIDTGA 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVD 277
           GLER+A V+Q+K N Y+ID    +I+A+ Q++G +Y             ++ V  RV+ D
Sbjct: 235 GLERLAFVMQDKPNMYEIDEVFPVIEAAMQMSGKRYGLGAAGPEAGAAYDDDVRMRVVAD 294

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H+RSS  LI DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL A    M ++Y
Sbjct: 295 HVRSSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEATMPTLLTASKDAMKASY 354

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTH 394
           PEL      I E   +E++ F +TL  G  +LD  ++         +++G  AF L+DT+
Sbjct: 355 PELEINWKTISEVAYAEEDAFRRTLSAGTTILDAAVATAKESKGAPVISGASAFSLHDTY 414

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--Y 452
           G P+D+  ++   +G   +D   F   + EQ+ RARA +    +G T+   F   EK   
Sbjct: 415 GFPIDLTLEMAAEQG-VSVDEEGFRTLMAEQKERARADARSKKTGHTDVRVFHDIEKAMG 473

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
           G + F+GY                             + V+A++  G     A +  +VE
Sbjct: 474 GGSTFLGYTE-----------------------QAAEATVEALLVDGVAAPAASAPAEVE 510

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+TPFYAE GGQL D G   +  G  +++ DVQ    G+ VH   +  G +      
Sbjct: 511 VILDRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGGMTVGEKA 570

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID + R  ++  H+ATH+++  L  ++   ++Q GS  +P  LRFD  H   +  ++
Sbjct: 571 YAEIDGERRLAIARAHTATHMVYAGLRNVVSEDLTQAGSENSPSRLRFDFRHGSALEGSQ 630

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  IE  VN+ +A++L V T +M+ + A  +GA AL G KY   VRVV++          
Sbjct: 631 LSDIEALVNEKLAEDLAVTTEVMSIDAAREAGAIALFGEKYGSEVRVVTIGD----GFDR 686

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGGTHV +TG I  + ++SE S+ +G+RRI+A+ G  A      +   +  L+  +  
Sbjct: 687 ELCGGTHVPTTGHIGRITVLSEGSVGSGVRRIDALVGDGAYEFQAKEHALVNQLSQLVGG 746

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVD- 805
               +  R+E +  + R+ +    K +    +        S   I  V  ++  + E+  
Sbjct: 747 RADELPERIESLLAKLRESEKELEKVRTAQALSQGADLAASAKAIGPVTVVASAVGEMPS 806

Query: 806 SKELKSVMDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKV 862
           +  L+++   ++ ++ +    ++ +G     K S+++   E   +    A  L R   K 
Sbjct: 807 ADALRTLALDVRDRLGNDRGTVVALGGVVGGKPSLVVATNEAAREASVKAGALVRAVGKH 866

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +GGGG GGR  +AQ GG        AI  +   ++
Sbjct: 867 MGGGG-GGRDDIAQGGGTKPEGLADAIDAIRKEIE 900


>gi|304383973|ref|ZP_07366429.1| alanine--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304334865|gb|EFM01139.1| alanine--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 875

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/919 (34%), Positives = 498/919 (54%), Gaps = 75/919 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++ +FF++ GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G   P  +  
Sbjct: 4   MTANEIRDSYKKFFEEKGHTIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTGNPEPRRR 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     LD
Sbjct: 64  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIDYAWEYLVDVLQLD 123

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY+TV++         D EA   W+K   L AD II+   +DNFW M +TGPCGPCS
Sbjct: 124 PKDLYVTVFEGSPEEQLEYDSEAASYWEK--HLPADHIIKGNKHDNFWEMGDTGPCGPCS 181

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    Q +    G    +++  + IEIWN+VFMQ+ ++       L    IDTGMG
Sbjct: 182 EIHLDSRTPQEKAEISGAALVNKDNPQVIEIWNIVFMQYVRKANGALEPLSMKVIDTGMG 241

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+   LQ K +NYD D+F+ +I+   +++G+ Y  E    V  RV+ DHLR+ +F IA
Sbjct: 242 FERLVRALQGKNSNYDTDIFQPIIREITKLSGITYGAEEQTDVAMRVVADHLRAVAFSIA 301

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP N   GYV+RRI+RRA+ YA   LG  E  +  LLP L  EMG AYPEL   + L
Sbjct: 302 DGQLPGNAKAGYVIRRILRRAVRYAYTFLGQKEAFLHRLLPVLIKEMGDAYPELPAQREL 361

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I   ++ E++ F +TL++G+ LL   +  +     ++L+G  AF+L+DT+G PLD+ + I
Sbjct: 362 IGRVMKEEEDSFLRTLEKGINLLTAEIERMQTEGRKVLDGVQAFRLFDTYGFPLDLTELI 421

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               G + +D   FN  +++Q+ RAR       +      W +L++  G  QF+GYD   
Sbjct: 422 CREHGYS-VDEAQFNAEMQKQKDRARNA-----AQVENSDWVALRQ--GEQQFVGYDYTE 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +K                                E+V D TPFY E 
Sbjct: 474 HECHILRYRKVTQKKNTY----------------------------FELVLDYTPFYGEM 505

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG  + +   +++ D +++          V       E + +  +D + R   +
Sbjct: 506 GGQVGDTGVLVSEDETVEVIDTKRENNQSIHI---VSALPKNLEANFMACVDTEKRAASA 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL + L  +LG HV Q GS ++ D LRFD +H + +T  EL+ +E  VN +I 
Sbjct: 563 ANHTATHLLDYVLKQVLGEHVEQKGSYVSADTLRFDFSHFQKVTDDELRQVERMVNAMIR 622

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           Q++P+   R    E+A   GA +L G KY D+VRVV          S   CGG H +STG
Sbjct: 623 QDIPLDEHRDTPIEEAKQMGAISLFGEKYGDKVRVVRFGP------SCEFCGGIHAASTG 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I +  IVSESS+ AGIRRIEA+TG+         ++ L+ + +    +  ++   +E+ 
Sbjct: 677 RIGMFKIVSESSVAAGIRRIEALTGKLCEEMFYSVEDTLRDIKALFN-NAKDLRTVLEKY 735

Query: 764 WEEYRKLQLIHAKRKLQLN--VEDLSCHKIA---DVNFMSHIISEVDSKELKSVMDALQK 818
            +E+  ++    + + Q    ++ +   +      +  +  ++  ++++  K ++  +++
Sbjct: 736 MDEHDNMRREIEQFQAQAVERMKSMLIERAVERRGIKVVKAVLP-IEAQVAKDLVFKIRE 794

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            I   ++ +VG +  +K  + I++++D++   + NA  + R +AK++GGGG GG+PH A 
Sbjct: 795 AIPQHLLCVVGSTAHEKPLLSIMLSDDMVKEQQLNAGQMVREAAKLIGGGG-GGQPHYAS 853

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + AI  V   
Sbjct: 854 AGGKNLDGINAAIDKVIEL 872


>gi|68171547|ref|ZP_00544925.1| Alanyl-tRNA synthetase, class IIc [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67999031|gb|EAM85704.1| Alanyl-tRNA synthetase, class IIc [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 887

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/918 (41%), Positives = 548/918 (59%), Gaps = 60/918 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  VS++R +F++FF KNGH++ PSS LI  +DP+L+FTN+GMV FK +FT       
Sbjct: 2   MKNNLVSNLRKSFIDFFAKNGHQVFPSSPLILKDDPSLLFTNAGMVQFKQMFTNPNNANV 61

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+ AW+ + KE 
Sbjct: 62  NTATSSQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGSYFKEGAIEFAWNFVIKEL 121

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L + RLY TVY +D+EAF LWKKISG+S  +II+ITT+DNFWSM  TGPCGPCSEIF+D
Sbjct: 122 SLSKDRLYFTVYHDDQEAFDLWKKISGVSDSRIIKITTSDNFWSMGNTGPCGPCSEIFYD 181

Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+ + GGLP    E+G R+ EIWNLVFMQ++++   E  +LPK  IDTGMGLER+A V+
Sbjct: 182 YGDNVKGGLPGTPEEDGARFTEIWNLVFMQYDRKLDGELCVLPKKCIDTGMGLERIAAVM 241

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           Q   +NYDI LFK LI AS++ +G      N + HRVI DH+RS++FLIA+G+ P NEGR
Sbjct: 242 QGVHDNYDISLFKALIAASKEQSGNS---TNELAHRVIADHVRSAAFLIAEGLTPGNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLR 352
            Y+LRRI+RRA  Y  +L Y + LM  + P L  E     M   YPELI AK LI   L+
Sbjct: 299 NYILRRIIRRAARYVYMLKYDDALMYKVFPTLIDEESCGYMADYYPELIHAKDLIMSILK 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E F  TL R L LL+  L +L   +IL+GD+ FKLYDT+G P+DI  DI+  +G+  
Sbjct: 359 IEEENFKDTLVRALPLLEKELMNLSSGDILSGDIVFKLYDTYGFPVDITLDIIKEKGVK- 417

Query: 413 IDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            D   F   + +Q+ R++ +  +       E+ W  +KE+ G+T+ +GY+          
Sbjct: 418 FDEQGFYDNMNKQKERSKLNHSIKSDQQLKEEFWVDIKERCGSTKSVGYERYD------- 470

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             + V +IV  G + VE A  G KV ++ D TPFYAE+GGQ GD
Sbjct: 471 ----------------TKATVLSIVCGGDKNVEIANVGDKVSILLDITPFYAESGGQKGD 514

Query: 531 TGCA----------IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
            G              +    ++ D +K  + +++H  I+++G L     +   ID + R
Sbjct: 515 VGIFNVIVRQEKELFANDNIAEVIDTKKVLDTLYIHECIIKQGSLMVGDVIFAKIDCERR 574

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           R L  NHSATHLLH+ L + + S + Q GS ++ + LRFD ++   +T  +L  IED + 
Sbjct: 575 RNLCANHSATHLLHYVLKSEIDSSIMQKGSLVSDEKLRFDFSYGVALTKEQLTLIEDKMY 634

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHV 699
            +I+ N PV++ + + +DA+A GA AL   KY +  VRVVS++       S  LC GTHV
Sbjct: 635 SLISGNNPVISHVCDLKDAVAGGAVALFTEKYEEHGVRVVSIKD------SKELCCGTHV 688

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             T EI    IVSE+SI  GIRRIEA+TG+ A  +   Q++ L S+A  +KV   NV+ +
Sbjct: 689 KYTSEIGCFKIVSEASIACGIRRIEAVTGRYAIDYFRQQEKMLNSIAESVKVPVDNVLVQ 748

Query: 760 VEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           ++++ ++ ++L+   +     + N++ ++  KI +V+F+   +S +    ++  ++   K
Sbjct: 749 IDKLDKKNQELEQKLSDVYFDMINLQGVNTEKIGNVDFLYSNLSNIPVNVMRKFIN---K 805

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            + +  I+L      +    ++ V   L  +  AVD  ++   ++    GGG   +AQ  
Sbjct: 806 HLTADRIILFANVVGQNVVCVVGVGNSLHCKVKAVDFVKMIGTMVKS-KGGGNAQLAQIN 864

Query: 879 GPNGNKADQAIAGVASFL 896
           G    + D  ++ V S L
Sbjct: 865 GEYVKEID-IMSNVKSKL 881


>gi|197099554|ref|NP_001125391.1| alanyl-tRNA synthetase, cytoplasmic [Pongo abelii]
 gi|75042108|sp|Q5RC02|SYAC_PONAB RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|55727911|emb|CAH90708.1| hypothetical protein [Pongo abelii]
          Length = 968

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/973 (32%), Positives = 476/973 (48%), Gaps = 96/973 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASKIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  PSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +           
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAI-------- 470

Query: 460 YDLLRGSKFMKEDRKVLC----QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            + LR       D               +     + V A+ ++   VEE  +GQ+  VV 
Sbjct: 471 -EELRARDLEVTDDSPKYNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVL 529

Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           D+T FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    +
Sbjct: 530 DKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQV 589

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ +
Sbjct: 590 WLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQ 648

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682
           +K  E+  N++I    PV T+  +        G  A+    Y D VRVVS+         
Sbjct: 649 IKKAEEIANEMIEAAKPVYTQDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLD 708

Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                 G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L    
Sbjct: 709 DPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAG 768

Query: 740 EKLKSLA---SFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVED 785
              K L+   + +K       +V   + ++ E        +++K +L    + L+  ++D
Sbjct: 769 SLKKPLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDD 828

Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           L     ADV                     +  + S   +K L   +   +        M
Sbjct: 829 LDRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTAAM 888

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L  +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N   
Sbjct: 889 LFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGC 947

Query: 885 ADQAIAGVASFLK 897
             +A+    SF +
Sbjct: 948 LQEALQLATSFAQ 960


>gi|184200992|ref|YP_001855199.1| alanyl-tRNA synthetase [Kocuria rhizophila DC2201]
 gi|205830074|sp|B2GIA1|SYA_KOCRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|183581222|dbj|BAG29693.1| alanyl-tRNA synthetase [Kocuria rhizophila DC2201]
          Length = 895

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/927 (34%), Positives = 479/927 (51%), Gaps = 67/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +L +F+   H ++PS+SL+    P  MFT +GMVPF   F GQE P YQ  
Sbjct: 1   MLSHEITQRWLSYFEARDHHVVPSASLVSQQ-PGAMFTIAGMVPFIPYFLGQETPPYQRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
           T+VQKC+R      D+D VG+T RH TFF+M GNFSFG YFK +AI +AW+LLT      
Sbjct: 60  TSVQKCIRTL----DIDEVGKTARHGTFFQMAGNFSFGDYFKSQAIPMAWELLTTAPEQG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++TVY+ D+E++ LW    GL A +I R+  ++N+W   + GP GP SEIF
Sbjct: 116 GFGLDPERLWVTVYEGDQESYDLWHDTVGLPAQRIQRMGRDENYWDTGQPGPAGPDSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLE 231
           +D+G    G   G + + +RYIEIWNLVFMQ+++     +       LP+ +IDTG+G+E
Sbjct: 176 YDRGPRY-GKDGGPAVDDDRYIEIWNLVFMQYQRGEGNGKDYEILGELPRKNIDTGLGVE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRSS 282
           R+A +LQ   N Y+ D  + ++ A+ +++G  Y           ++ V  RV+ DH+RSS
Sbjct: 235 RLAMLLQGVENFYETDQVRPVLDAAAKLSGRTYHGAEKAGEQGYDDDVRMRVVADHVRSS 294

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
             LIADG+ P NEGRGY+LRR++RRA+   RLLG TEP +  LLP     M   YP + +
Sbjct: 295 LMLIADGVTPGNEGRGYILRRLLRRAVRAMRLLGVTEPCLPVLLPESRDAMKGVYPVVAE 354

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIM 401
               I     +E+  F KT++ G   L+  +    G+   L+G  AF L+DT G P+D+ 
Sbjct: 355 DFERISRIAYAEERAFLKTIESGTTRLEHAVEVAKGEQRALSGADAFALHDTFGFPIDLT 414

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
            ++    G   +D  +F   + EQR RA+  +        +            ++F GY 
Sbjct: 415 LEMAEEAG-VSVDETAFRALMAEQRQRAQEDARAKKGALADLSELRRMLDDHGSEFTGYT 473

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L                          + V+AI+  G  V  A  G+ VEVV ++TPFY
Sbjct: 474 ELVTP-----------------------TTVRAILSGGVSVPAASEGEHVEVVLERTPFY 510

Query: 522 AEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AEAGGQ  D G        +L + DVQ+  +G+ VH   V  G +     +   +D + R
Sbjct: 511 AEAGGQAADVGTIDSSDGAQLTVEDVQQPVKGLSVHKVTVSAGQVLVGDEVTARVDSRRR 570

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                 HS TH++H AL  +LG    Q GS      LRFD +H + + + +++ IE   N
Sbjct: 571 HDGEAAHSGTHVIHAALHDVLGPDAVQRGSFNKEGYLRFDFSHGEALNAGQIQEIEQIAN 630

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  +  VVTR M   +A   GA +L G KY D VRVV +     G  S  LCGGTHV 
Sbjct: 631 TAIRDDFEVVTREMPLAEAKKLGAMSLFGEKYGDEVRVVEM----NGPWSRELCGGTHVG 686

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGR 759
           ST ++  L +VSE S+ +G RR+EA+ G  + +HL  +   +  L   LKV     +  R
Sbjct: 687 STSQLGSLSLVSEQSVGSGNRRVEALVGLNSFNHLAAERTLVNQLTGMLKVQSSAELPER 746

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV-DSKELKSVM 813
           +    ++ ++ +   A  + Q              ++  V  + H   E+  +  L+S+ 
Sbjct: 747 LAATLDKLKETERQLAGLRQQQLQAQAGQLARDAERVGPVTAVLHDAGEIASADALRSLA 806

Query: 814 DALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
             L+ ++ S   +  + G++ + +  V++ V +   D    A  L R +A  LGGGG GG
Sbjct: 807 LDLRTRLGSEPAVAAVTGVAND-RPLVVVAVNDAARDAGLAAGQLVRTAATTLGGGG-GG 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
           +P +AQ GG +  K   A+A +   ++
Sbjct: 865 KPDVAQGGGSDAAKIPDALAAIRRQIQ 891


>gi|281350877|gb|EFB26461.1| hypothetical protein PANDA_021488 [Ailuropoda melanoleuca]
          Length = 976

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/977 (31%), Positives = 467/977 (47%), Gaps = 96/977 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPLERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYSGKVGADDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGDDLIMLDIYAIEELRE-KG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                       + V A+ +    VEE  +GQ+  VV D+T 
Sbjct: 478 LEATDDSPK----YNYHSDSSGSYAFESTVATVMALRRDKMFVEEVCTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G LR    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVEDNSEDKTEFTVKNAQVRGGYVLHIGTIYGSLRVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N +I    PV T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       +VSE +I  GIRRI A+TG  A+  L   +    
Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVLVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKN 772

Query: 744 SLASFL-KVSQGNVVGR--------------------------------VEEIWEEYRKL 770
           SL+    KV    V  +                                +++I ++  + 
Sbjct: 773 SLSIMEAKVKAQTVPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKIMDDLDRA 832

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--------LKSVMDALQKKIQS 822
                ++++    + L          +  + S   +K         L   +   +     
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKATRGGGEGALNEALKLFKTHSPQ 892

Query: 823 GIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              ML  +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G 
Sbjct: 893 TSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGK 951

Query: 881 NGNKADQAIAGVASFLK 897
           N     +A+   ASF +
Sbjct: 952 NVGCLQEALQLAASFAQ 968


>gi|290986366|ref|XP_002675895.1| alanyl-tRNA synthetase [Naegleria gruberi]
 gi|284089494|gb|EFC43151.1| alanyl-tRNA synthetase [Naegleria gruberi]
          Length = 957

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/967 (30%), Positives = 472/967 (48%), Gaps = 98/967 (10%)

Query: 3   NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
               IR  F+EFF+K   H  +PSSS++P  DPTL+FTN+GM  FK IF GQ  P     
Sbjct: 16  TSKEIRKQFVEFFEKKYEHTFVPSSSVVPHEDPTLLFTNAGMNQFKAIFLGQASPDSSLA 75

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI  AW+LLT+
Sbjct: 76  KLKRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAITWAWELLTE 135

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + L++ RLY+T +          DEEA ++W +   +  D I+  +  DNFW M +TGP
Sbjct: 136 VYGLEKDRLYVTYFGGNEKLNLPADEEAKQIWGQF--VPDDHILPGSMKDNFWEMGDTGP 193

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWN VFM+F ++  Q    LP   +DTGM
Sbjct: 194 CGPCSEIHYDRI-GGRNAAHLVNMDDPNVLEIWNNVFMEFNRKEDQTLEYLPAKHVDTGM 252

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHL 279
           GLER+ ++LQ K +NYD D+F  + +A ++ TG +            +    +RVI DH+
Sbjct: 253 GLERLVSILQNKMSNYDTDVFMPIFEAIQKETGSRPYTGKLGAEDVDHIDTAYRVIADHI 312

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R+    ++DG  P N GRGYVLRRI+RRA+ +   +   +  +  L   +   MG  +PE
Sbjct: 313 RTLVIALSDGGYPDNTGRGYVLRRIVRRAVRFGEFMNAKKGFLTRLASCVVELMGDFFPE 372

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397
           L +    +EE ++SE+  F KTL  GL   + +   +  +   +++G  AFKLY T+G P
Sbjct: 373 LKKNSEKVEELIQSEEVLFAKTLRVGLKFFNRIAEKMKSNGESVVSGPDAFKLYATYGFP 432

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   +   +G+  +D++ + + +E+  + ++             I             
Sbjct: 433 VDLTLIMAQEQGMT-VDMVEYKKEMEKHATASQGTKQEATDMKLGVI------------- 478

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQK---VEV 513
                    K   E +    Q     +   + + V AI  +    VEE  +  +   + +
Sbjct: 479 ------ETDKLQNELKIEPTQDDIKYVWENIQAKVVAIFSESSGFVEELNTECEEVNIGI 532

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER---GILRTEMS 570
           + DQT FYAE GGQ  D G        L++ +VQK A  I     + E    G +    +
Sbjct: 533 ILDQTNFYAEGGGQAPDNGVLRIGETELKVVNVQKFAGYILHIVNVSESKLAGNVTVGTT 592

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ++Y+ R  ++ NH++TH+L+ AL  +LG+   Q GS +  + L FD + +K  +  
Sbjct: 593 VSSEVNYERREPIAANHTSTHMLNFALRKVLGTDCDQQGSIVKEEELCFDFSAAKAPSVE 652

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------- 682
           ++  +E  VND+I  + PV +++  R+ A   +G  A+    Y ++VRVVS+        
Sbjct: 653 QVAEVEKIVNDLIVADHPVFSKVQERDAAYEINGLRAMFSANYGEQVRVVSIGQDSDSIM 712

Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                E   + S   CGGTH+  T +     I+SE SI  G RRI A+T + A+  +   
Sbjct: 713 TDRSNEKWRLISVEFCGGTHLKQTSQAQTFVILSEKSISTGKRRIVALTRKAAKEAVERA 772

Query: 739 D------EKLKSLASFLKVSQ-GNVVGRVEEIWE----EYRKLQLIHAK-----RKLQLN 782
                  ++L+ L+  L   +   +   +  + +      +  +          RK+Q +
Sbjct: 773 QKFSVKIDELEKLSDELFCPRYYELTSELTLLTDIPLLSKKAFEKRLEACQTKVRKIQQS 832

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL--------QKKIQSGI----IMLVGI 830
            +     K      +S +   ++ K LKS++  L         KK+   +    + L+  
Sbjct: 833 QKKDDAEKAN--QLISQLKESIEQKSLKSLVYQLEDGSDQKFVKKVIDALTTIPVCLISK 890

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + +K   VL  V ++     +A        KV+  G GGG+P  AQ  G + +K  +A+ 
Sbjct: 891 ADDKTIIVLASVPQEQTATLSANTWVTEVCKVVS-GKGGGKPIFAQGRGSDVSKVAEAVK 949

Query: 891 GVASFLK 897
                 K
Sbjct: 950 LAEEMAK 956


>gi|257892474|ref|ZP_05672127.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|257828853|gb|EEV55460.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,408]
          Length = 819

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/857 (37%), Positives = 469/857 (54%), Gaps = 60/857 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D I  I   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHI--IDVEDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE                E ERY+EIWNLVF +F  +       LP  +IDTGMGLE
Sbjct: 174 YDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +++Q+ + N++ DLF  +I A E++   +KY       ++++VI DH+R+ SF I D
Sbjct: 234 RMVSIVQDASTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE
Sbjct: 294 GALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIE 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++  
Sbjct: 354 KVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + ++ QR RAR+      S   +     L +    ++FIGY      
Sbjct: 414 DEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  IV+   ++ E   G+  +++FDQTPFYAE GG
Sbjct: 471 -----------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+ D G  + +   +       +KA      H +  +  +    +  L ID   R ++  
Sbjct: 507 QVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVKAPMSEGQTYHLLIDQSMRNRIIK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I +
Sbjct: 567 NHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWE 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T   + + A   GA AL G KY   VRVV++        S  LCGGTHV++T  I
Sbjct: 627 AIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIGG-----WSIELCGGTHVANTENI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ 
Sbjct: 682 GIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++ R+LQ  + +   +L  +           I     ++  +   D  +L+ + D  ++K
Sbjct: 742 QQVRELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQK 801

Query: 820 IQSGIIMLVGISKEKKA 836
             S I++L    KEK  
Sbjct: 802 NISDILVLQTNKKEKSV 818


>gi|289706211|ref|ZP_06502574.1| alanine--tRNA ligase [Micrococcus luteus SK58]
 gi|289557050|gb|EFD50378.1| alanine--tRNA ligase [Micrococcus luteus SK58]
          Length = 903

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/929 (34%), Positives = 481/929 (51%), Gaps = 75/929 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +  FF+  GH ++PS+SL+   DP+L+FT +GMVPF   F G++ P    V
Sbjct: 1   MKSQEIARRWTAFFESRGHRVVPSASLVSP-DPSLLFTVAGMVPFIPYFLGEQTPPSPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R      D++ VG+T RH TFF+M GNFSFG YFKE AI +AW+LLT      
Sbjct: 60  VSVQKCIRTA----DIEEVGKTVRHGTFFQMCGNFSFGDYFKETAIPMAWELLTSSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++TVY ED+EA ++W++  G+  ++I R+  +DN+W+  + GP GPCSEIF
Sbjct: 116 GFGLDPERLWVTVYREDDEAERIWREDVGVRPERIQRMGKDDNYWNTGQPGPGGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+G    G   G + +  RYIEIWNLVFMQ+       + +      L   +IDTG+GL
Sbjct: 176 YDRGPAY-GVDGGPAADDTRYIEIWNLVFMQYRLSAVRSKDDFDIAGELENKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281
           ER+A +LQ   N Y+ D  + ++  + Q+ G  Y           ++ V  R++ DH+RS
Sbjct: 235 ERLAMILQGVENMYETDQVRPVLDRAAQLAGRAYTSTEDPADPHYDDDVRLRMVADHVRS 294

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LI+DG+ P NEGRGYVLRR++RR +   RL+G TEP+   LLP     M   YP + 
Sbjct: 295 ALMLISDGVRPGNEGRGYVLRRLIRRVVRALRLMGVTEPVFPELLPVSRDAMKGTYPVVA 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDI 400
                I     +E++ F +T+  G   LD  +         + G  AF+L+DT+G P+++
Sbjct: 355 DEFERISRIAYAEEKAFLRTIAAGTARLDAAVGQARSAGGGIAGPDAFELHDTYGFPIEL 414

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             +I    G   +D   F   + EQR RARA +    SG T+   +      G T F GY
Sbjct: 415 TLEIAEEAG-VAVDEAGFRALMAEQRDRARADAKAKKSGHTDTAVYQRLRAEGQTHFTGY 473

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                                    +   S+V+ ++Q GE V  A +G ++E+V D TPF
Sbjct: 474 TE-----------------------HTTESVVRGLLQNGEEVPSAGAGTELELVLDATPF 510

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ  DTG   GDG RL++ DVQ   +G+ VH   V  G +      +  ID Q R
Sbjct: 511 YAESGGQAADTGLITGDGFRLEVLDVQAPVKGLSVHRVKVLDGEVAAGAQALGAIDLQRR 570

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                 HS THL+H AL  ILG   +Q+GS      LRFD   ++ +++     +ED VN
Sbjct: 571 LDGEKAHSGTHLVHAALHQILGPEATQSGSFNKEGYLRFDFRWAESLSAGARSEVEDVVN 630

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  +  V+T+ M+ E+A A GA +L G KY DRVRVV +     G  S  LCGGTHV 
Sbjct: 631 IAIRDDHTVLTQEMSLEEARALGAMSLFGEKYGDRVRVVEI----DGAWSRELCGGTHVG 686

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            T +I  L ++ E S+ +G RR+EA+ G  +  HL  +   +  L+   K     +  R+
Sbjct: 687 RTAQIGSLTLLGEQSVGSGNRRVEALVGLDSFRHLAAERTLVSELSEMFKAPAEELKDRI 746

Query: 761 EEIWEEYRKLQLIHAKRK----------LQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
               +  +  +   A+ +          L    +D++      V  ++H   +V   +L+
Sbjct: 747 GATLDRLKAAEKQVAELRAQALQAQAGQLAGQAQDVTTSAGTTVRVLAHHAGDVAGDQLR 806

Query: 811 SVMDALQKKIQSG--------IIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAK 861
           S+   L+ +I+S         +++ +    + +  V++   E        A  + + +  
Sbjct: 807 SLALDLRTRIESAGGNAAGTPVLVALTAEAKGRPLVIVATNEAARAAGLKAGAMVKTATG 866

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           VLGGGG GG+  +AQ GG +  +   A+ 
Sbjct: 867 VLGGGG-GGKDDVAQGGGQDVTRVGDALD 894


>gi|1015321|dbj|BAA06808.1| alanyl-tRNA synthetase [Homo sapiens]
          Length = 968

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/969 (32%), Positives = 475/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGK NDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKQNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRARG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            ++   S                 +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 478 LEVTDDSPK----YNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N++I     V T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKK 772

Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
            L+   + +K       +V   + ++ E        +++K +L    + L+  ++DL   
Sbjct: 773 CLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|330752116|emb|CBL87077.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 870

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/919 (35%), Positives = 487/919 (52%), Gaps = 72/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF    H+++PS+ ++  NDPTLMFTN+GM  FK  F G        V
Sbjct: 1   MKSAEVRQQFLDFFASKTHKIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNSISKNVRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFKE AI  AW+LL   + +D
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKEEAIAWAWELLVDVYKID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
              LY+T+++         D EA+  W+KI  L  D+I+    +DNFW M + GPCGPCS
Sbjct: 121 PSILYVTIFEGHEGDGLAKDTEAYDFWEKI--LPEDRILLGNKHDNFWEMGDQGPCGPCS 178

Query: 174 EIFFDQG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D      +    G    + +  + +E+WNLVF++F ++  +    LP   +DTGMG
Sbjct: 179 EIHVDMRSTEEKKAISGASLVNMDHPQVVEVWNLVFIEFNRKADRSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+  VLQ KT+NYD D+F  LI   E  T + Y          RVI DH R+  F +A
Sbjct: 239 FERLCMVLQNKTSNYDTDVFTPLISKIEVKTNLVYGKEETIDCAMRVIADHARTVFFAVA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L T+MG+ + EL   K L
Sbjct: 299 DGQLPSNTGAGYVIRRILRRAIRYGYTFLDLKEPFIFRLVETLETQMGAVFSELKAQKEL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            +  +R E+  F KTL++GL+LLD ++S    ++ L G+  F+LYDT+G PLD+   I  
Sbjct: 359 AKNVIREEEVSFLKTLNQGLLLLDDLISKTKGNK-LKGEQVFELYDTYGFPLDLTALIAR 417

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G   +D   F +A+  Q+SR+RA S       TE            T F+GYD L  S
Sbjct: 418 EKGF-AVDEAGFEKAMAVQKSRSRAASSSSAEDWTE------INDMPITGFVGYDDLEHS 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   RK                           +    SG++ ++VF+ TPFY E GG
Sbjct: 471 VQLVRYRK---------------------------INSVKSGEQFQLVFNATPFYPEGGG 503

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD+G  +G    +   +  KK   + VH    +     T+ + +  +D + R +   N
Sbjct: 504 QVGDSGILLGSDGDIITIEDTKKENNLIVH--FTKTLPKNTQNTFIAKVDAKERFRSKCN 561

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H ALST+LG+HV Q GS +    LRFD +H   +++ E+K++E  VN  I + 
Sbjct: 562 HSATHLMHQALSTVLGTHVEQKGSMVHGANLRFDFSHFAKLSADEIKAVEAFVNARINEK 621

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           + +   R +   +A+ASGA AL G KY D VR +          S  LCGGTHV +T +I
Sbjct: 622 IVLEENRSVPVAEAMASGAMALFGEKYGDSVRTIRFGE------SIELCGGTHVKNTADI 675

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IVSES++ +GIRRIEAITG+  +++   Q+  L  +   LK  Q  +   +  +  
Sbjct: 676 WHFKIVSESAVASGIRRIEAITGEAVQAYFESQEAILNHINENLKHPQDPI-KAISSLQA 734

Query: 766 EYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E   L+       K ++Q   ++L      +  ++F++  + ++    +K +   L  + 
Sbjct: 735 ENALLKKEIEKLSKLQIQAVKQELQSQLKSVNGIDFLAAEV-DLSPPAIKDLSFEL-GQG 792

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           ++   +++   K  K  +   ++++L+     NA  + +   K + GGG GG+P  A +G
Sbjct: 793 KNNTFLVLVTRKGGKPVISCYISKELVAERSLNAGAVVKDLGKHIQGGG-GGQPFFATAG 851

Query: 879 GPNGNKADQAIAGVASFLK 897
           G N +     +A  ASF++
Sbjct: 852 GKNTDGISAVLAASASFIE 870


>gi|261203393|ref|XP_002628910.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239586695|gb|EEQ69338.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 962

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/965 (31%), Positives = 462/965 (47%), Gaps = 95/965 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       +  
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLKRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKVYGLE 136

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA +LW    G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   IDTGMG ER+
Sbjct: 196 EIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L     ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFPEIRR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG  L +     +       L+G   ++LYDT G P+D+
Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL        N   EE R +A+  S G G  T + +  ++ +          
Sbjct: 435 TQLMAEERGLTID-----NAEFEEARLKAKEASKGQGKQTADVVKLTVHDLG-------- 481

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                      D               ++S +KAI    + V+       G++  ++ D+
Sbjct: 482 ------LLETMDNVPKTNDDAKFGRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  I DG      +  +   G  +H   ++ G      S++   D 
Sbjct: 536 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYGGYILHTGFMKYGSFNVNDSVIAEYDE 595

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L+ IE 
Sbjct: 596 LRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIER 655

Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V  + +        SG  A+ G  Y D VRVVSV               
Sbjct: 656 ISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 715

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A        E  + L
Sbjct: 716 WKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 775

Query: 746 ---------------ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776
                          A  L+V    +    V +V          +++ E  +  Q + +K
Sbjct: 776 QRFDKMELGPQKEMEAKLLQVDLNQLTISAVEKVRFRERFTQIHKKVVEGQKAAQKLESK 835

Query: 777 RKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834
           + L          +  D  + +  +    + K +   ++ ++ K+Q+  + +    K   
Sbjct: 836 KALDAITGYFETPENKDAPHLVLQLPISANPKAVSDSLNFVKTKMQNKSVYVFAADKGAG 895

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K      V + L        + A   + ++ GG  GG+  +A   G    K + AI    
Sbjct: 896 KVVHGCHVAQSLSAQGATPNEWANTVSSIV-GGRAGGKAPVAIGNGTEAEKLEDAIKAAT 954

Query: 894 SFLKK 898
            +L+K
Sbjct: 955 EYLEK 959


>gi|112984224|ref|NP_001037452.1| alanyl-tRNA synthetase, cytoplasmic [Bombyx mori]
 gi|135089|sp|P21894|SYAC_BOMMO RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|155955|gb|AAA27821.1| transfer RNA-Ala synthetase [Bombyx mori]
          Length = 967

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/969 (31%), Positives = 473/969 (48%), Gaps = 83/969 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
              + IR TF++FF K GH+ + SSS IP +DPTL+F N+GM  FK IF G   P     
Sbjct: 5   MTGNEIRKTFIDFFIKKGHKYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGSVDPNSDMA 64

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+LLT 
Sbjct: 65  QYIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWELLTD 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            F L + RLY+T ++ D         E   +W  + G+    I+  +  DNFW M ETGP
Sbjct: 125 VFKLSRERLYVTYFEGDPSSGLEPDLECRNIWLNL-GVPEAHILPGSMKDNFWEMGETGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LP   ID G+
Sbjct: 184 CGPCSELHYDRIGD-REAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPTKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +V+Q K  NYD D F  + +A E  TG++               + +RV+ DH 
Sbjct: 243 GLERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGVDDVDGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +P
Sbjct: 303 RTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVELLGDVFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I   +  E+ +F KTL RG  LL   +  L   + L GDVA++LYDT+G P+
Sbjct: 363 EIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTIEKLNNSKTLPGDVAWRLYDTYGFPI 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL  +D+  + +     R  ++  S G  +G  + I   +          
Sbjct: 423 DLTQLMCEEKGL-NVDMEGYEK----SRKESQLVSQGKAAGQEDLIALDVHAISHLQD-T 476

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G      S            K  +      ++ + A+ +  E V E  SGQ+  V+ D+T
Sbjct: 477 GIPATDDSPKYN-YLPSSTDKDALYTFAPCTAKIVALRKNKEFVSEISSGQECGVILDRT 535

Query: 519 PFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
            FYAE GGQ+ D G  +  D   ++ T    + +G +V HA    GIL+   +L L ID 
Sbjct: 536 SFYAEQGGQIFDEGYMVKIDDETVEFTVKNVQVKGGYVLHAGKVEGILKVGDTLSLHIDT 595

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + RR +  NH+ TH+L++ L  +LG+   Q GS + PD LRFD T+  P+T  ++K  E+
Sbjct: 596 ERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDFTNKGPMTIKQIKDTEN 655

Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSVEYED 685
            + +IIA+N  V     +  +A   +G  A+    Y D VR           + + +   
Sbjct: 656 EIKEIIAKNKTVYANYTSLSEAKKINGLRAMFDEHYPDPVRVVSVGVPVEDLIKNPDAPT 715

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKL 742
           G   S   CGG+H+  T  I    IVSE  I  GIRRI A+TG  A   +      + ++
Sbjct: 716 GFETSVEFCGGSHLHRTSHIGEYVIVSEEGIAKGIRRIVAVTGPEAIKAINKLSVLENEV 775

Query: 743 KSLASFLKVSQG-----NVVGRVEEIWEEY----------RKLQLIHAKRKLQLNVEDLS 787
            ++A+F+K          V  ++ ++  E            +L+ +    K QL+ ++ +
Sbjct: 776 NNVANFIKEQNESISHKEVSKKIVDLTNEISQAQISYWKKDELRNMLKNLKKQLDDKERA 835

Query: 788 CHKI----------------ADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVGI 830
              I                 +  ++   +    ++K L   +  +++   +   M   +
Sbjct: 836 EKAIIITQVTEKAKELCLERKESKYIVSELKAFGNTKALDGALKQVKQFCPNSAAMFFSV 895

Query: 831 SKE-KKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            K+  K   L  V + D+     A +  +    ++GG G GG+   AQ+ G N N  ++A
Sbjct: 896 DKDADKIYCLAAVPKSDVEKGLLASEWVQSVVDIIGGKG-GGKAESAQASGNNPNSLNEA 954

Query: 889 IAGVASFLK 897
           I     + K
Sbjct: 955 IQIANEYAK 963


>gi|239608271|gb|EEQ85258.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
          Length = 962

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/965 (31%), Positives = 462/965 (47%), Gaps = 95/965 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       +  
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLKRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKVYGLE 136

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA +LW    G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   IDTGMG ER+
Sbjct: 196 EIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L     ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFPEIRR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG  L +     +       L+G   ++LYDT G P+D+
Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL        N   EE R +A+  S G G  T + +  ++ +          
Sbjct: 435 TQLMAEERGLTID-----NAEFEEARLKAKEASKGQGKQTADVVKLTVHDLG-------- 481

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                      +               ++S +KAI    + V+       G++  ++ D+
Sbjct: 482 ------LLETMNNVPKTNDDAKFGRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  I DG      +  +   G  +H   ++ G      S++   D 
Sbjct: 536 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYGGYILHTGFMKYGSFNVNDSVIAEYDE 595

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L+ IE 
Sbjct: 596 LRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIER 655

Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V  + +        SG  A+ G  Y D VRVVSV               
Sbjct: 656 ISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 715

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A        E  + L
Sbjct: 716 WKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 775

Query: 746 ---------------ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776
                          A  L+V    +    V +V          +++ E  +  Q + +K
Sbjct: 776 QRFDKMELGPQKEMEAKLLQVDLNQLTISAVEKVRFRERFTQIHKKVVEGQKAAQKLESK 835

Query: 777 RKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834
           + L          +  D  + +  +    + K +   ++ ++ K+Q+  + +    K   
Sbjct: 836 KALDAITGYFETPENKDAPHLVLQLPISANPKAVSDSLNFVKTKMQNKSVYVFAADKGAG 895

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K      V + L        + A   + ++ GG  GG+  +A   G    K + AI    
Sbjct: 896 KVVHGCHVAQSLSAQGATPNEWANTVSSIV-GGRAGGKAPVAIGNGTEAEKLEDAIKAAT 954

Query: 894 SFLKK 898
            +L+K
Sbjct: 955 EYLEK 959


>gi|170590129|ref|XP_001899825.1| Alanyl-tRNA synthetase [Brugia malayi]
 gi|158592744|gb|EDP31341.1| Alanyl-tRNA synthetase, putative [Brugia malayi]
          Length = 962

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/974 (30%), Positives = 433/974 (44%), Gaps = 93/974 (9%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M       +R  F+ FF+   H  + SSS+IP +DPTL+F N+GM  +K IF G  +P  
Sbjct: 1   MKALTCDEVRAAFINFFKDREHTYVHSSSVIPFDDPTLLFANAGMNQYKPIFLGTVEPSS 60

Query: 59  -----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
                +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+L
Sbjct: 61  EMAKLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKLEVCNWAWEL 120

Query: 114 LTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LTK   +   RLY++ +          DEE  ++W    G+    I+     DNFW M +
Sbjct: 121 LTKVLGIPGERLYVSYFGGDEKTGLDADEECRQIWLN-IGVPPSHILSFGMKDNFWEMGD 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
            GPCGPCSEI +D+           + +    +EIWNLVFMQF ++       LP+  ID
Sbjct: 180 VGPCGPCSEIHYDRVGNRD-ASHLVNADDPMVVEIWNLVFMQFNREEDGSLKQLPRKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276
            G+G ER+  VLQ K +NYD D+F  L  A    T ++               + +RVI 
Sbjct: 239 CGLGFERLVAVLQNKLSNYDTDIFTPLFXAIHNGTKVRPYSGKVGADDVDGIDMAYRVIA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGS 335
           DH+R+ S  ++DG  P N GRGYVLRRI+RR + YA   L      +  L+P +   +G 
Sbjct: 299 DHIRTLSIALSDGGRPDNTGRGYVLRRILRRGVRYANEKLSAPPGFLSSLVPTVVNLLGK 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
            +PEL +    + + +  E+++F KTL RG  L    ++ L    IL GDVA++LYDT+G
Sbjct: 359 TFPELHKDPQAVMDIINDEEKQFLKTLSRGRTLFQKAVAGLQGHNILPGDVAWRLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ Q +   RGL         +  E  R +A   S    +   + I   +       
Sbjct: 419 FPLDLTQLMAEERGLLVD-----FEVFENCRQKAAGISAAHANKMRDTIDLDV-NAISEL 472

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +  G      S   K        +  +        I+ A+ +    ++   SG    ++ 
Sbjct: 473 KNKGIPATDDSPKYKYYALSSEDQQTLYNFEKCEGIILALRKDKIFLDTLNSGDFGALIL 532

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ+ DTG         +      +  G +V       G L     ++  I
Sbjct: 533 DRTNFYAEQGGQIFDTGVLTEVDKGSEFIVSNVQIRGGYVVLVGTVEGQLCVGDKVIQAI 592

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL  ++G  V Q GS + PD LRFD+T  +P+T  +++ +
Sbjct: 593 DEDRRNLIMKNHTGTHVLNFALRKVIG-EVEQKGSLVAPDRLRFDLTAKQPLTYEQIRMV 651

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684
           E     +I  N  V  + +   +A            Y D VR+VSV             +
Sbjct: 652 EKESQMLIDTNATVFAKNVPLAEARQINGLRAA---YPDPVRIVSVGIPIEELLRNKDSD 708

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                +   CGGTH+ + G I  L I  E +I  GIRRI A+TG  A   +   D   + 
Sbjct: 709 LAVNTAVEFCGGTHLHNVGHIGKLVITVEEAIAKGIRRIIALTGPEAFRAIHRADRLEQR 768

Query: 745 LAS------------FLKVSQGNVVGRVEEIWEEY-----------------RKLQLIH- 774
           +                K        RV E++EE                  + LQ +  
Sbjct: 769 VEDAHHKITTDHMVNLDKAQFKAATKRVLELFEEINQSQLPYCRKESIRKKAKALQKLLD 828

Query: 775 ---------AKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGI 824
                       K++    +L         F  H+ S   + K L S    L+   +S  
Sbjct: 829 MHDREAKAVLADKVRCEASELDSSLKDGTLFTVHVFSKGANGKVLDSA---LKSITKSHA 885

Query: 825 IMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           IM   +S + K   +  V++D       A +      +VL  G GGG    AQ+ G N  
Sbjct: 886 IMGFSVSDDGKVVAVARVSKDVASKGLQASEWISRVCQVL-DGRGGGTITQAQATGNNAE 944

Query: 884 KADQAIAGVASFLK 897
             ++A      F +
Sbjct: 945 LVEEAAQIALKFAE 958


>gi|254581276|ref|XP_002496623.1| ZYRO0D04378p [Zygosaccharomyces rouxii]
 gi|238939515|emb|CAR27690.1| ZYRO0D04378p [Zygosaccharomyces rouxii]
          Length = 956

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/965 (31%), Positives = 466/965 (48%), Gaps = 91/965 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R  FL+FF+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRKAFLDFFKSKDHKFVASSPVVPYDDPTLLFANAGMNQYKPIFLGTVDPSSDFYH 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  AW+LLTK 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKQGAISYAWELLTKV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L   RLY+T ++ D         EAF+LWK   G+    I+     DNFW M + GPC
Sbjct: 130 YGLPADRLYVTYFEGDPKNGLEADMEAFELWKS-VGVDESHILPGNAEDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI FD+           + +    +E+WNLVFMQF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHFDRI-GGRNAASLVNMDDPDVLEVWNLVFMQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ+  +NYD D+F  L     +VTG++                 +RV+ DH+R
Sbjct: 248 FERVVSILQDYRSNYDTDVFTPLFARIHEVTGVRPYAGKFGAEDTDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           +  F IADG +P NEGRGYVLRRI+RR   +AR             L+P L +++   +P
Sbjct: 308 TLVFAIADGGVPNNEGRGYVLRRILRRGARFARKYMNYPIGDFFSRLVPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           E+ +    + E L  E+  F KTLDRG  L +           + L+G   ++LYDT+G 
Sbjct: 368 EVAKDPSYLFEILNEEEVSFAKTLDRGERLFEKYADAATSSGKKTLDGLQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++      G+   +     + E  G   
Sbjct: 428 PVDLTELMAEEKGLT-IDGPGFEKAKQESYEASKRGGKKDGAEVLKLNVHEISELNGENV 486

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                                +         V S +  +    + V E    G+K  V+ 
Sbjct: 487 ------------------PKTKDEYKYGMENVDSTILKLHDGTKFVNEISEPGKKYGVIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + D +     +  +   G   H   +  G L     ++ + 
Sbjct: 529 DKTCFYAEQGGQEYDTGKLVIDDVAEFNVENVQLYNGFVFHTGSLLEGKLSVGNKIIASY 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL  +LG+ + Q GS + P+ LRFD +H K + + E+  +
Sbjct: 589 DELRRFPIKNNHTGTHILNFALREVLGNDIEQKGSLVAPEKLRFDFSHKKGMAADEILKV 648

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRVRVVSVE-----------Y 683
           ED  N  I +N+ V  + +   DA +     A+ G  Y D VRVVSV             
Sbjct: 649 EDICNKQIKENMSVYYKDVPLTDAKSIYGVRAVFGETYPDPVRVVSVGKSVDDLLANPSN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG------ 737
           E+   +S   CGGTHV  TG+I +  I+ ES I  GIRRI A+TG  A            
Sbjct: 709 EEWSKYSVEFCGGTHVVKTGDIKVFVILEESGIAKGIRRIVAVTGSEAYEAQRIANEFDK 768

Query: 738 -------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                        +++KLK L+  L       VS+  +  +  +I +  +      AK++
Sbjct: 769 ELNAVDRLPFSPLKEKKLKELSVKLGQLSISVVSKQELKTKFAKIEKVVKDEIKTRAKQE 828

Query: 779 LQLNVEDLSCHKIADVN--FMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLV-GISKEK 834
            +  ++++  +   + N  F++  +    ++K +   ++ ++   +   I L  G   E 
Sbjct: 829 SKKTLDEVKEYFAKNENSQFLAKFVDIPTNAKAITEAVNYVKSSAKDKSIYLFTGNDPEG 888

Query: 835 KASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +    +++  L    +   +A+  + ++ GG  GGR ++ Q  G     A  A+A V 
Sbjct: 889 KIAHGCYISDAALSKGIDGSTVAKQVSGII-GGKAGGRGNVFQGMGDKPTAAGDAVAEVE 947

Query: 894 SFLKK 898
              K+
Sbjct: 948 KLFKE 952


>gi|296122797|ref|YP_003630575.1| alanyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015137|gb|ADG68376.1| alanyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
          Length = 870

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/916 (33%), Positives = 472/916 (51%), Gaps = 71/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  +L+FF   G    PS  L+P +DPT++FT +GM  FKN F G     +   
Sbjct: 1   MKTDELREKYLDFFVGKGCLRRPSDVLVPKDDPTVLFTPAGMNQFKNQFLGIGPLDFTKA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R G    D+ NVG T+ HHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 61  TTCQKCLRTG----DISNVGVTSYHHTFFEMLGNFSFGDYFKREAIHWAWEFLTDKKWLG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPCSE 174
           L+  RL +T Y +D+EA  +W+   GL + +I R    +NFW          G CGPCSE
Sbjct: 117 LEPSRLTVTAYLDDDEAVGIWQNEIGLDSKQITREDEYENFWPAGSPTNGPDGVCGPCSE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232
           I++             +    + +EIWNLVF QF +          LPK +IDTGMGLER
Sbjct: 177 IYY-------------TPPSGKKVEIWNLVFTQFNRVGDPPNNLRPLPKKNIDTGMGLER 223

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290
            A V+Q   +NY+ID+ + L     ++ G+KY+  +      R I DH+R+ +F I +G 
Sbjct: 224 TAAVMQGFESNYEIDILRPLCDRGGEILGVKYDFASPVGRPLRRIADHVRACTFAIHEGC 283

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P  E   Y++R ++RRA     LLG  EP +  L+P +   M   YPEL Q    +   
Sbjct: 284 VPGPEKENYIIRLLLRRASMEGFLLGKREPFLSQLVPMIAEVMRKPYPELHQTIEAVSHV 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE+++F   ++RGL     ++          L+GD AF L+ T G  +++ + +    
Sbjct: 344 IESEEKQFLGVVERGLTKFRKLVDQARSANRTSLSGDEAFDLHQTDGFLIELTETLAAQE 403

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   +D+  F +  EE +  +   +      +   I     +K G T+F+GY+ +     
Sbjct: 404 G-VSVDMARFKECREEAKKASGRGAFADSVMSEGPI--DALKKSGGTEFLGYEAIES--- 457

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQ 527
                                + ++ I+   ++ E   S    + +V D+TPFY E+GGQ
Sbjct: 458 --------------------KATIRGIIADKKLAESYSSPLVTIGIVLDKTPFYGESGGQ 497

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG          + D QK  E +FVH   ++ G L+    +   +D   R  +   H
Sbjct: 498 VGDTGTIRTASGEFTVYDTQKDGE-LFVHIGQLKAGSLKVGEEVTAGVDAHRRAAIRRAH 556

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATH+LHHAL T LG + +Q GS +  D LRFD  H + +T+ EL SIED +N +IA+  
Sbjct: 557 SATHILHHALRTTLGENATQRGSKVEGDQLRFDFAHPRSLTNEELISIEDQINQLIAEGA 616

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           P+ TR+M   +A   GA AL G KY D VRVV +     G  S   CGGTH+S+TG++ +
Sbjct: 617 PINTRVMPINEAKKLGAMALFGEKYPDFVRVVEM-----GDFSREFCGGTHLSNTGQVGI 671

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766
             +V +  + AG+RRI  +TG +A + +   +  L+ +   +K  +   +  +V  + +E
Sbjct: 672 CRVVKDELVAAGVRRISCVTGPKAIARMRESENLLREVGMLVKATTAEELPRKVAALQDE 731

Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R  +   ++   Q      +        + D+  + H   E+  ++LK ++D ++ +  
Sbjct: 732 LRVAKKELSQYASQSLAGMAAKLVNDAPMVGDIKVIVHRADELAREQLKELVDQIRAQAG 791

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S  + LVG + + K S++   T+DL  RF+A D  + +AK++GGGG GGR  +A++GG  
Sbjct: 792 SAAV-LVGQAVDGKVSLIAGATKDLAQRFSASDAVKAAAKLVGGGG-GGRAELAEAGGKI 849

Query: 882 GNKADQAIAGVASFLK 897
             K D+A+    +FLK
Sbjct: 850 PEKLDEALQEGLAFLK 865


>gi|149178839|ref|ZP_01857419.1| alanyl-tRNA synthetase [Planctomyces maris DSM 8797]
 gi|148842314|gb|EDL56697.1| alanyl-tRNA synthetase [Planctomyces maris DSM 8797]
          Length = 875

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/917 (34%), Positives = 483/917 (52%), Gaps = 72/917 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R ++L FF++ G    PS  L+P +D T++FT +GM  FK+ F G  K  + + 
Sbjct: 1   MKTDELRESYLSFFEEKGCVKRPSDVLVPRDDKTVLFTPAGMNQFKDQFLGVGKLEFPSA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q C+R G    D+ NVG T  HHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 61  TTCQMCLRTG----DIQNVGVTAYHHTFFEMLGNFSFGDYFKREAIHWAWEYLTDKKYLG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSE 174
           LD   L +TVY ED+EA+ +W     L A++I R   ++NFW     S    G CGPCSE
Sbjct: 117 LDPSLLSVTVYQEDDEAYNIWHDEIKLPANRISRENEHENFWPAGAPSDGPDGVCGPCSE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232
           IF+       GG            EIWNLVF QF +          LPK +IDTGMGLER
Sbjct: 177 IFY----HPNGGKDNV--------EIWNLVFTQFNRVGNPPDNLKPLPKKNIDTGMGLER 224

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            A+VLQ   +N++ID  K L  A+  + G  Y+    +    R I DH+R+ +F I +G+
Sbjct: 225 TASVLQGVRSNFEIDTLKQLCLAAGDIVGTGYDFDAPSGRPVRRISDHVRAITFSIHEGV 284

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P  +   YV+R+++RRA+    LLG  EP +  L+PA+   M + YP++ +    ++ T
Sbjct: 285 NPGRDKESYVVRQLLRRALLEGYLLGKHEPFLHRLVPAVVEIMKAPYPDIAKTVENVQST 344

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++ E+E+F   +++GL   +G L    +    +++G+ AF L+ T G  +++ + +    
Sbjct: 345 IKEEEEQFLGVIEKGLSRFEGFLKSAEQAGSSVISGEDAFDLHQTDGFLIELTEALAAKN 404

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            ++          + ++  +       L S  +E    +L +    T F GY+       
Sbjct: 405 NMSVNRTE--FNNMMQRHQKDSGSGAFLDSVMSEGPLTALHKTISETDFKGYE------- 455

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK---VEVVFDQTPFYAEAG 525
                           T    S V  I+ +  +VE  V       V VV DQTPFYAEAG
Sbjct: 456 ----------------TTTTESKVIGIIAEDRLVESMVEKGHAHPVVVVLDQTPFYAEAG 499

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GDTG    DGI+ ++T+ QK A  +++H   +  G L    +L  T+    R  +  
Sbjct: 500 GQVGDTGFLEADGIKFEVTNTQKNAG-LYLHIGHLLTGKLEQGQTLTATVTEPRRSGIQR 558

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSATHLLHHAL T+LG +  Q GS +  D LRFD +HSK +T  E+  IED +N  +++
Sbjct: 559 AHSATHLLHHALHTVLGENAMQRGSKVEEDTLRFDFSHSKAVTPEEISRIEDIINQRVSE 618

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             PV T +M  + A   GA AL G KY D VRVV +     G  S+ LCGGTH+S+TG++
Sbjct: 619 GAPVTTELMKLQKARELGAMALFGEKYPDYVRVVQM-----GDFSTELCGGTHLSNTGQV 673

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIW 764
            L  I++E  +  G+RRI A+TG +A       ++ L  +A+ +KV    ++  R++ + 
Sbjct: 674 GLCKIINEELVAKGVRRIYALTGPKALEKTRDTEKLLLEIAAQMKVPRPDDLPVRIQHLQ 733

Query: 765 EEYRKLQLIHAK--RKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E R+ +    K   K      D    +   + DV  +++   +    +L+ + D L+KK
Sbjct: 734 DELRETKKQLTKFSSKSLAGTADDLLEEAPVVNDVKIVAYHAKDASRDQLRELADHLRKK 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
               + +++G   + K +++  V  DL+     A D  + +AKV+GGGG GGRP MA++G
Sbjct: 794 -GKQVALILGTVLDGKVALMAAVNSDLVKQGLKAGDCVKAAAKVVGGGG-GGRPDMAEAG 851

Query: 879 GPNGNKADQAIAGVASF 895
           G + +K D+A+   A +
Sbjct: 852 GKDPDKLDEALTTGADY 868


>gi|114663431|ref|XP_001169474.1| PREDICTED: alanyl-tRNA synthetase isoform 1 [Pan troglodytes]
 gi|114663433|ref|XP_001169520.1| PREDICTED: alanyl-tRNA synthetase isoform 2 [Pan troglodytes]
          Length = 968

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/969 (32%), Positives = 474/969 (48%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++  +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMGLELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNAIRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRARG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            ++   S                 +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 478 LEVTDDSPK----YNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N++I     V T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESMKK 772

Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
            L+   + +K       +V   + ++ E        +++K +L    + L+  ++DL   
Sbjct: 773 CLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|169154546|emb|CAQ13590.1| novel protein similar to vertebrate alanyl-tRNA synthetase (AARS)
           [Danio rerio]
          Length = 988

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/970 (31%), Positives = 471/970 (48%), Gaps = 93/970 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 31  TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 90

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 91  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 150

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 151 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 209

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 210 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 268

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++           G +      + +RV+ DH R
Sbjct: 269 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 328

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 329 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 388

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G PLD
Sbjct: 389 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGFPLD 448

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+ G+D+++F +    ++  A+  S G GSG  + I   +           
Sbjct: 449 LTALIAEERGM-GVDLLAFEE----EKKAAQLKSQGKGSGDEDHIMLDIYAI-------- 495

Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            D LR       D     K                 V A+ ++   V+E ++GQ+  V+ 
Sbjct: 496 -DELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLL 554

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  D G  + +    +       +  G +V H     G L+    L L 
Sbjct: 555 DKTSFYAEQGGQSFDEGYMLRENDSAEDFTVKNTQVRGGYVLHIGTVYGTLKVGDRLTLH 614

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E++ 
Sbjct: 615 VDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDEVRR 673

Query: 635 IEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE----------- 682
            E+    +IA    V              G  A+    Y D VRVVS+            
Sbjct: 674 TEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLADPN 733

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK- 741
              G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+      D   
Sbjct: 734 SPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKADALK 793

Query: 742 --LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVEDLSC 788
             L +LA  +K         Q  +    E +      ++RK ++  + + L+  ++DL  
Sbjct: 794 LSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDDLDR 853

Query: 789 HKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              ADV                     +  + S   +K L   +  L+        ML  
Sbjct: 854 ASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAMLFT 913

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ+ G N     +
Sbjct: 914 VDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQCIQE 972

Query: 888 AIAGVASFLK 897
           A+   + F +
Sbjct: 973 ALQLASEFAR 982


>gi|206901044|ref|YP_002250743.1| alanyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
 gi|206740147|gb|ACI19205.1| alanyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
          Length = 866

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/909 (35%), Positives = 488/909 (53%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  F+++F KN H  LPS+SL+P +DPTL+FT +GMVPFK  F GQ  P  + 
Sbjct: 1   MMKSSDIRRKFIDYFVKNDHLHLPSASLVPSDDPTLLFTTAGMVPFKPYFLGQGVPPKRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TTVQKC R      D++ VG T RH TF EMLGNFSFG YFK  AI  A++ LTKE  +
Sbjct: 61  ITTVQKCFRT----TDIERVGITPRHLTFLEMLGNFSFGDYFKREAIGFAYEFLTKELGI 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQ 179
              +L+I+VY+ED+EA+ +W K  G+  ++I+R+   DNFW     TGPCGPCSEI++D 
Sbjct: 117 PVSKLWISVYEEDDEAYDIWNKEIGIPKERIVRLGKEDNFWGPPGPTGPCGPCSEIYYDF 176

Query: 180 GECIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G            +  +R++EIWNLVFM +      +   LP+ +IDTGMGLER+ TV++
Sbjct: 177 GPKTKEEENCKPGDPCDRFMEIWNLVFMAYYMDEDGKLSPLPQKNIDTGMGLERITTVVE 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             +N ++ DLF  +IQ  + +             R+I DH+R  +FL+ DG++P NEGRG
Sbjct: 237 GVSNVFETDLFLPIIQEIKNIIENSDPTTE----RLISDHIRGITFLMGDGVVPTNEGRG 292

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RR++  A   G  EP +  L+P +   M  AYPELI  K  I++ L  E+E+F
Sbjct: 293 YVLRRLIRRSLRRAYKHGIKEPFLYKLVPVVVEIMKEAYPELIDRKDYIQKVLIREEEQF 352

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL++GL LL+     +  +++++G+ AFKLYDT+G P+++ Q+I    G   IDI  F
Sbjct: 353 LRTLEQGLALLEDYFKKVS-NKVVSGEFAFKLYDTYGFPIELTQEIAGEEGFK-IDIDEF 410

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKE---KYGATQFIGYDLLRGSKFMKEDRKV 475
           N+ +EEQR +ARA        +   +             T+F+GYD L            
Sbjct: 411 NKYMEEQREKARASMEEKLEESFISLSDEEVYYMRNLPKTEFVGYDTLETESN------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                  G+  +  + G++V  + D+TPFYAE GGQ+ D G   
Sbjct: 464 -----------------VLFFVGGKHGKNILEGEEVYFLMDKTPFYAEGGGQVSDKGKVY 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
              + ++I DV+K  E   +H   V +G  +    +   +D + R     +H+ATHLLH 
Sbjct: 507 NSEVEVEILDVKKLGEDFIIHRGKVLKGEFKEGQIVKAEVDKEKRYHTMRHHTATHLLHS 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG+HV Q+GS ++P+ LRFD TH  P++  +LK IE  VN+ I  N  V      
Sbjct: 567 ALREYLGTHVMQSGSLVSPEFLRFDFTHHSPLSYEDLKIIEKKVNENILANHKVEKFWTT 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY   VRV+ ++       S  LCGGTHV  TGEI   YIV E  
Sbjct: 627 LEEARRMGAIALFTEKYQKNVRVIKIDN-----ISMELCGGTHVDYTGEIGSFYIVKEEG 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +GIRRI A+ G +A  +   ++E +  ++  L  S   V  +VE++  E ++ +    
Sbjct: 682 IGSGIRRIFAVCGLKAWEYQKRKEEIVNKVSLLLNSSLDEVHIKVEKLLNELKEKERKIK 741

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + ++   +         KI + + +   + ++++  +K + D L+ K    +IML   
Sbjct: 742 DLEEKVIKREAEVLLNNVDKIDNFSLICASL-DMENDAIKRLGDYLKNK-DDNLIMLFFR 799

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K    ++V + L+     A  +  L  +    G GGG+  +AQ   P  N     I
Sbjct: 800 PLDNKLVGTVMVGKKLISKGITAKKIVDLIGERFN-GKGGGKDTLAQISLPKTN-----I 853

Query: 890 AGVASFLKK 898
             +  FLK+
Sbjct: 854 EEIKGFLKE 862


>gi|88856253|ref|ZP_01130913.1| alanyl-tRNA synthetase [marine actinobacterium PHSC20C1]
 gi|88814572|gb|EAR24434.1| alanyl-tRNA synthetase [marine actinobacterium PHSC20C1]
          Length = 884

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/916 (33%), Positives = 479/916 (52%), Gaps = 55/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  +L +F + GH ++PS+SL+  +DPTL+FT +GMVPF    TG     +   
Sbjct: 1   MQTADIQNRWLTYFGERGHTIVPSASLV-SDDPTLLFTVAGMVPFVPYLTGLVPAPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-----K 116
           T+ QKC+R      D++ VG+T RH TFF+M GNFSFG YFK+ AIQ AW+ LT      
Sbjct: 60  TSSQKCIRTL----DIEEVGKTPRHGTFFQMNGNFSFGDYFKKEAIQFAWEFLTLPESDG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                   L++TVY++D++A   WK+ +GL  ++I R+  + N+WS  + GP GPCSEIF
Sbjct: 116 GLGFLPEDLWVTVYEDDDDAVAYWKETAGLPDERIQRLGMDTNYWSTGQPGPAGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLE 231
           FD+G    G   G + + +RY+EIWNLVFMQ+ +   + +       LP  +IDTGMGLE
Sbjct: 176 FDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGEGKGKEFSILGELPNQNIDTGMGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289
           R+A + Q   N Y+ID  + ++  + +++G  Y  ++   V  RV+ DH+RSS  LIADG
Sbjct: 235 RVAFLKQGVENMYEIDQVRPVLDMAAELSGHTYGADHEADVRLRVVADHVRSSLMLIADG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+NEGRGYVLRR++RR +   RLLG        L PA    M  AYPE+ +    I  
Sbjct: 295 VTPSNEGRGYVLRRLLRRTVRAMRLLGVEGTTFAELFPASRDAMKDAYPEVEKDYDRISR 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCA 407
            + +E++ F +TL  G  +LD  + H  +     L  D AF L+DT G P+D+  ++   
Sbjct: 355 VVLAEEDTFLRTLASGTTILDTAVVHTKESGASELPSDTAFLLHDTFGFPIDLTLEMAAE 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL+ +D  +F+  ++EQR RA+A +        +   +     +G T F GY+ L    
Sbjct: 415 AGLS-VDREAFDTLMKEQRDRAKADASSKKQYLADLSVYGAFRAHGETTFTGYETLETD- 472

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V  I+  G  V  A SGQ  E++  +T  YAE+GGQ
Sbjct: 473 ----------------------SSVIGIIVDGVSVSRAASGQIAEIILAETSLYAESGGQ 510

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  +G    L++ DVQ+  +G+  H   +  G +         +D   RR  +  H
Sbjct: 511 EADAGAIVGASFHLEVLDVQRPVKGLISHKVRITAGEVGVGDPATALVDADWRRGATQAH 570

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATH++H AL  ILG    Q+GS      +R D + S+ +++     IE+  N  +  NL
Sbjct: 571 SATHVIHAALRQILGKDAHQSGSYNKAGYMRLDFSWSQALSAETKSEIEEVANTAVRDNL 630

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V TRIM  +DA   GA AL G KY D VRVV +    GG  S  LC GTHVS + EI L
Sbjct: 631 EVSTRIMALDDAKDLGAMALFGEKYGDTVRVVEI----GGPWSLELCAGTHVSRSAEIGL 686

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + +V ESS+ +  RR+E++ G  A  +   +   +  L S LK  +  +  R+ E+    
Sbjct: 687 ISLVGESSVGSSNRRVESLVGMNAFRNFAAERAIVSELTSSLKTPREQLPDRIAELMANL 746

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQ 821
           +  +   A+ +     + +     S   +  VN +   + E+ S  +L+ ++ ++++++ 
Sbjct: 747 KSAERKIAQLEAGQLSQRVPALIESARALGSVNAVIENVGELPSTDDLRGLVQSVRERMG 806

Query: 822 -SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
               ++ +  +   K +V++   +       A      +A  + GGGGGG+P +AQ GG 
Sbjct: 807 AEASVVALAATIGDKPAVIVATNDASRAHGFAAGALAKAAAGVLGGGGGGKPDIAQGGGA 866

Query: 881 NGNKADQAIAGVASFL 896
           N      A+A + + L
Sbjct: 867 NPAAIPDALALITATL 882


>gi|330443884|ref|YP_004376870.1| alanyl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328806994|gb|AEB41167.1| alanyl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 874

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/906 (35%), Positives = 486/906 (53%), Gaps = 48/906 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R+ FL F+    H+++PSS + P  DP+++FTN+GM  FKNIF  +E   Y   
Sbjct: 1   MLSNLLRSKFLNFYANRHHKIIPSSPVFPHQDPSILFTNAGMNQFKNIFLNKETVSYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK  A   AW+     F+  
Sbjct: 61  TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKADATTFAWEASLSVFNFA 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              +Y TV+++D+EAF LW++   L  ++I R+T  DNFWSMA+TGPCG CSE+ FD+G 
Sbjct: 121 PEFIYATVHEKDDEAFALWERY--LPTERIFRLTDKDNFWSMADTGPCGYCSELLFDRGP 178

Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    EGER++E WNLVFM+F +  + +   LP   +DTG GLER+ +++   
Sbjct: 179 KFGSASSPLEDIEGERFLEYWNLVFMEFNRTAEGDLLSLPNKHVDTGAGLERLISLISGT 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ + LI   EQ++G  Y     +    RVI DH+RS SF IADG+LP N  RG
Sbjct: 239 NTVFEADVLRMLIGKIEQLSGKTYCPDSPHGAAFRVIADHIRSLSFAIADGLLPGNTERG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RRA+ Y R LG+ +P +  ++P+L   MG AYPEL  +   I+E L +E+E F
Sbjct: 299 YVLRKILRRAVNYGRRLGFQQPFLAEIVPSLADAMGEAYPELRLSLTQIQEVLSNEEECF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTL RG  LL  VL       +++G+ AFKL DT+GLP+D +  +        +D+ +F
Sbjct: 359 LKTLHRGGNLLQQVLKASSSSSVISGEDAFKLKDTYGLPIDEIFLLAKDYNF-QVDMETF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
               +E + R+R HS+         ++  L E     +FIGYD L    F          
Sbjct: 418 ALLEQEAKERSRKHSVKTQEEVK-VVYEQLPELSV--EFIGYDTLSCDTF---------- 464

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++AI+ Q +IV     G++  ++   TPFYAE GGQ+GD+G      
Sbjct: 465 -------------IEAIISQDQIVSSLQEGEEGILILKTTPFYAEKGGQVGDSGEIFSQE 511

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       G   HH  + +G L    ++   ++   R++++ NH+  HLLHHAL+
Sbjct: 512 GSFIVSHTTTPQAGFIAHHGKMSQGKLSQAEAVTTQVNCIRRKKIANNHTGCHLLHHALA 571

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           ++LG+H+ Q GS +    +R D T+ K I   +L SIE  VND+I +N PV+TR     D
Sbjct: 572 SVLGNHIRQAGSYVDETKIRLDFTYPKAIAPEDLASIESLVNDLIRENHPVLTRETLYSD 631

Query: 659 -AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
              +       G KY D VRVVS         S  LCGGTH  +TG++    IV E +I 
Sbjct: 632 VMNSKEIKQFFGDKYGDTVRVVSAG------VSHELCGGTHAQATGDLGYFRIVKEHAIA 685

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEAITG+ A +    + + L   A  L+  +  ++ ++    E+ +K   + +  
Sbjct: 686 TGIRRIEAITGEEAEAASRQERKLLDEAALLLQAPKDQLLAKLTHALEQRKKQDKVISDL 745

Query: 778 KLQLNVEDLSCHKIA------DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           + +L    L    I       +++++ + ++E +   L+   +   +K+    I L    
Sbjct: 746 ENKLISAQLD-ELINQRHSSHEISYLVYHLAEKEGHHLQQYANCFHQKLPQRSISLWITK 804

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           K +K  VL  ++EDL    F A +L +       GG  GG    AQ    +    ++   
Sbjct: 805 KNRKYIVLSRISEDLAAQGFQAQELLKAILAP-YGGRWGGAKLSAQGSASSLPATEELYQ 863

Query: 891 GVASFL 896
            +  ++
Sbjct: 864 TLWQWI 869


>gi|169154547|emb|CAQ13591.1| novel protein similar to vertebrate alanyl-tRNA synthetase (AARS)
           [Danio rerio]
          Length = 963

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/970 (31%), Positives = 471/970 (48%), Gaps = 93/970 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++           G +      + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G PLD
Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGFPLD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+ G+D+++F +    ++  A+  S G GSG  + I   +           
Sbjct: 424 LTALIAEERGM-GVDLLAFEE----EKKAAQLKSQGKGSGDEDHIMLDIYAI-------- 470

Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            D LR       D     K                 V A+ ++   V+E ++GQ+  V+ 
Sbjct: 471 -DELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLL 529

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  D G  + +    +       +  G +V H     G L+    L L 
Sbjct: 530 DKTSFYAEQGGQSFDEGYMLRENDSAEDFTVKNTQVRGGYVLHIGTVYGTLKVGDRLTLH 589

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E++ 
Sbjct: 590 VDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDEVRR 648

Query: 635 IEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE----------- 682
            E+    +IA    V              G  A+    Y D VRVVS+            
Sbjct: 649 TEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLADPN 708

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK- 741
              G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+      D   
Sbjct: 709 SPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKADALK 768

Query: 742 --LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVEDLSC 788
             L +LA  +K         Q  +    E +      ++RK ++  + + L+  ++DL  
Sbjct: 769 LSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDDLDR 828

Query: 789 HKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              ADV                     +  + S   +K L   +  L+        ML  
Sbjct: 829 ASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAMLFT 888

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ+ G N     +
Sbjct: 889 VDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQCIQE 947

Query: 888 AIAGVASFLK 897
           A+   + F +
Sbjct: 948 ALQLASEFAR 957


>gi|119195813|ref|XP_001248510.1| alanyl-tRNA synthetase, cytoplasmic [Coccidioides immitis RS]
          Length = 1023

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/966 (30%), Positives = 465/966 (48%), Gaps = 96/966 (9%)

Query: 6    SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60
             +R TFL+FF+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       + 
Sbjct: 78   KVRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKR 137

Query: 61   VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
                QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L
Sbjct: 138  AHNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGL 197

Query: 121  DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  RLY+T ++         D E   LW    G+  D I+     DNFW M + GPCGPC
Sbjct: 198  EPDRLYVTYFEGNKDAGIEPDLETKDLWLS-VGVKEDHILSGNMKDNFWEMGDQGPCGPC 256

Query: 173  SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            SE+ +D+           + +    +EIWN VF+Q+ ++++     LP   +DTGMG ER
Sbjct: 257  SEVHYDRI-GGRNAAHLVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGYER 315

Query: 233  MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283
            + +VLQ+K +NYD D+F  L  A  ++TG++                 +RV+ DH+R+ +
Sbjct: 316  LVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDVDGIDTAYRVVADHVRTLT 375

Query: 284  FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341
            F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ 
Sbjct: 376  FAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPEIK 435

Query: 342  QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLD 399
            + +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D
Sbjct: 436  KKQTDVMEILDEEEISFAKTLDRGERQFEIYAQQAKDSGSNKLHGADVWRLYDTFGFPVD 495

Query: 400  IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
            + Q +   RGL+  ++          R +A+  S G     ++ +  S+ +         
Sbjct: 496  LTQLMAEERGLSIDNVEFEEA-----RLKAKEASKGQAKAASDLLKLSVHDL-------- 542

Query: 460  YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516
                     +++D+              + S + AI    E V+       G ++ ++ D
Sbjct: 543  -------SKLEKDKVPKTNDDAKFGRGNILSQIVAIYHDKEFVDSTSGIPEGDQIGIILD 595

Query: 517  QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            +T FYAE GGQ  DTG  I DG         +   G   H   ++ G L    S++   D
Sbjct: 596  KTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMYGGYVFHTGFIKYGDLSVGDSVISEYD 655

Query: 577  YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
               R  +  NH+ TH+L+ AL  +LG+ + Q GS +  + LRFD +H   ++ ++L+ IE
Sbjct: 656  ELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDLEKIE 715

Query: 637  DNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684
            +   + I QN  V ++ +        +G  A+ G  Y D VRVVSV              
Sbjct: 716  EKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVKDP 775

Query: 685  DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------- 736
                 S   CGGTHV  TG+I  L I+ E  I  GIRRI A+TG+ A             
Sbjct: 776  RWKGVSIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDAHEVQRIAKEFGDR 835

Query: 737  -----------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIHA 775
                        ++++ K + + L     + V +           +++ E  + LQ    
Sbjct: 836  LNRFEKMEIGPKKEQEAKLIQADLNQLSISAVEKARFREQFARIHKQVLEAQKALQKQEI 895

Query: 776  KRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
            K  L          +  D +  +  + +  ++K +   ++  + K++   I +     E 
Sbjct: 896  KAALDAINSHFEKPENKDSSHLIVRLPTSANAKAISESINHAKSKLKDKSIYVFAADAEQ 955

Query: 834  KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             + +    V+  L     +A + + + + ++ GG  GG+   +   G   ++ D+AI   
Sbjct: 956  GRVAHGCYVSSSLSAQGASASNWSGVVSGIV-GGKAGGKAPTSIGNGTEVDRVDEAIEAA 1014

Query: 893  ASFLKK 898
              +L++
Sbjct: 1015 TKYLEQ 1020


>gi|301335327|ref|ZP_07223571.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|301336313|ref|ZP_07224515.1| alanyl-tRNA synthetase [Chlamydia muridarum MopnTet14]
          Length = 875

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/890 (37%), Positives = 496/890 (55%), Gaps = 45/890 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   
Sbjct: 1   MLSNTLRSNFLKFYANRNHTPVTSSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D
Sbjct: 61  TTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              +Y TV+++D+EAF LW+K   L  DKI R+T  DNFWSMA+TGPCG CSE+ FD+GE
Sbjct: 121 PDFIYATVHEKDDEAFALWEKY--LPTDKIFRLTDKDNFWSMADTGPCGFCSELLFDRGE 178

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E 
Sbjct: 179 KFGKAASPLEDVDGERFLEYWNLVFMEFNRASDGTLLALQKKCVDTGAGLERLVSLLAET 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298
              ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RG
Sbjct: 239 ETVFEADVLRHLIAKVENLSGTTYSPTESKGAAFRVIADHIRSLSFAIADGLLPGNTERG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  ++  I+E L +E+E F
Sbjct: 299 YVLRKILRRAVNYGKRLGFHRPFLAEVVPSLVETMGEAYPELQASETQIQEVLTTEEEHF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +        +D+ +F
Sbjct: 359 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDHDYT-VDMETF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +   E + R+R ++    S +   I+  L +    ++F+GY +L    F          
Sbjct: 418 EKLEMEAKERSRKNTAKTTSDS-NSIFLDL-DPTNTSEFVGYHMLSCDTF---------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++ IV+  EI      G++ E++   TPFYAE GGQ+GD+G    + 
Sbjct: 466 -------------IEGIVKYNEIATTLEEGEEGEIILRTTPFYAEKGGQIGDSGEIFCES 512

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       G+ VHH  + +G L+T M++   ++   R++++ NH+  HLLH AL 
Sbjct: 513 GTFLVSHTTTPKAGLIVHHGKLSQGSLQTTMAVTAQVNQNLRKKIANNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R     D
Sbjct: 573 ITLGEHIRQAGSYVDSKKIRLDFTHNKALSPEDLLAIETIVNEKIRENDPVTIREALYSD 632

Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
             +S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++ 
Sbjct: 633 VTSSSEIKQFFGDKYGDVVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEAITG+ A +   GQD  L  +AS ++  +  ++ ++  + EE R+L    A  
Sbjct: 687 TGIRRIEAITGEDAETLARGQDADLNEIASVIQSPKDQILVKIRNVIEEKRELAKQVADL 746

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + QL  + +        KI +  ++ ++++E + + ++   +AL K+I +  I L    K
Sbjct: 747 ENQLVQQHVKSLLPACDKIDETLYLGYLLTEEEGQRIQQYANALHKEIPANFISLWVTEK 806

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  VLI V++DL+ R  +A  L         GG  GG+   AQ     
Sbjct: 807 SGRYIVLIRVSDDLIKRGIHAQVLLEELLAP-YGGRCGGKAISAQGSSKE 855


>gi|297571413|ref|YP_003697187.1| alanyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931760|gb|ADH92568.1| alanyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
          Length = 890

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/923 (34%), Positives = 500/923 (54%), Gaps = 60/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F K+ H +  S SLI   DP+++FT +GMVPF     G EK  +  +
Sbjct: 1   MRTAEIRQRWLDYFAKHNHHIAESVSLISP-DPSILFTIAGMVPFTPYIIGTEKSPHPRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVGRT RH TFF+M GNFSFG YFKE AI LA+ LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGRTTRHGTFFQMCGNFSFGDYFKEGAIDLAFGLLTSSVDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L++ RL++T++++D+ +F    K+ GL+   I+++   + FWS  + GP G C+EI 
Sbjct: 116 GYGLEKDRLWVTIWEKDDVSFDHLTKVIGLNPRHIVKLKREEIFWSTGQPGPAGSCAEIH 175

Query: 177 FDQGECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMG 229
           +D+G               G+RY+EIWNLVF Q+ +   + +       L + +IDTG G
Sbjct: 176 YDRGPEFGPEAVGGTVDPGGDRYLEIWNLVFDQYLRGEGEGKNFPLLGELEQTAIDTGAG 235

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIA 287
           LER+A +LQ K N Y+ID    +IQA+E++TG  Y  N+  +   RV+ DH+RSS  LIA
Sbjct: 236 LERIAYLLQGKKNMYEIDEVYPVIQATERITGKTYGENDEDDILMRVVADHVRSSMMLIA 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RRA+   RLLGYT+     LLP     M  +YP L      I
Sbjct: 296 DGVRPGNDGRGYVLRRLIRRAVRSVRLLGYTDVAYPELLPVTKDAMKDSYPVLEAEFDRI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILC 406
            +   +E++ F +TL  G  + +   +   +  I L GD AF L+DT+G P+D+  ++  
Sbjct: 356 SQIAYNEEQAFRRTLTAGTQIFEQAAAEAKEAGIQLPGDAAFTLHDTYGFPIDLTLEMAS 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSL-KEKYGATQFIGYDLLR 464
            +G   +D   F Q ++EQ+ RARA +    +G  +  ++  +  +  G T+F+GY    
Sbjct: 416 EKG-IAVDEAGFRQLMQEQKDRARADAQAKKTGHVDATVYHEIQAKSGGDTRFLGYTD-- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                      V  I++ G  V  A +  ++++V DQTPF+AE 
Sbjct: 473 ---------------------YVADGKVIGILKDGVSVPAAEAPAEIDIVLDQTPFWAEQ 511

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  ++  G  + +TDVQ   +G+FVH   +  G +  + S+   ID   R Q+
Sbjct: 512 GGQLADHGTISVAGGGLVDVTDVQMPVKGLFVHRGTLTEGSIALDDSVRSAIDIPRREQI 571

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ATH++H AL   LG   +Q GS  +P  LRFD  H + + +  L  IE  VN+ +
Sbjct: 572 ARAHTATHMVHKALHEYLGEQATQAGSENSPSRLRFDFRHGEQVPTTILHDIESRVNERL 631

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V   +MN E A ASGA AL G KY + VRVVS+    GG  S  LC GTHVS +G
Sbjct: 632 QDNLTVSAEVMNIEAAKASGAMALFGEKYGNDVRVVSI----GGDWSRELCAGTHVSDSG 687

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I L+ ++ ESSI +G+RRIEA+ GQ A +    +   L  L++   V    +   ++ +
Sbjct: 688 AIGLVTVLGESSIGSGVRRIEALVGQGAYAAGARERALLSQLSTLTHVRPEELPEHIDTL 747

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEV-DSKELKSVMDALQ 817
               +      +  + +  +  ++        I  +  ++H + +V  + +++  +  L+
Sbjct: 748 LNRLKNADKEISALRKEKMLSAMASVLEQRTDINGIAVITHDLGDVASADDVRVAVMDLR 807

Query: 818 KKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +++ S   ++ L G++KE+   V+            A  L  ++AK+LGGGG GG+P MA
Sbjct: 808 ERLGSTPAVVALTGVAKERPTIVIATNDAARSKGIKAGALVSVAAKILGGGG-GGKPDMA 866

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG +  +   A   + + + +
Sbjct: 867 QGGGTDVTQIPHAFDAITAAIAQ 889


>gi|289615775|emb|CBI57516.1| unnamed protein product [Sordaria macrospora]
          Length = 961

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/965 (32%), Positives = 461/965 (47%), Gaps = 93/965 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQA 60
            +R TFL+FF + GH ++PSSS++P NDPTL+FTN+GM  FK IF G     ++    + 
Sbjct: 11  QVRKTFLDFFAERGHNVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTEDMAQLKR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK + L
Sbjct: 71  AVDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAWSWELLTKVYGL 130

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D +RLY+T ++         D EA  LW +  G+  D II     DNFW M + GPCGPC
Sbjct: 131 DPQRLYVTYFEGSPDLGLEPDLEAKNLWLE-VGVPEDHIIPGNMKDNFWEMGDQGPCGPC 189

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SEI +D+           + +    +E+WN+VF+QF++Q  +    LP   IDTGMG ER
Sbjct: 190 SEIHYDKVGGGRNAAHLVNMDDPLVVEVWNIVFIQFDRQADKSLKSLPAKHIDTGMGFER 249

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSS 283
           + + LQ+KT+NY  D+F  L    ++V          G          +RVI DH+R  S
Sbjct: 250 LVSALQDKTSNYATDIFTPLFAKIQEVTGAREYTDKYGKDDVDGIDTAYRVIADHIRLLS 309

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341
           F IADG  P N GRGYV+RR++RR   YAR     E       +LPAL  +MG  +PEL+
Sbjct: 310 FAIADGAAPNNVGRGYVVRRVLRRGARYARKYFNAEIGTFFSRILPALVEQMGEQFPELV 369

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +  I+E L  E+  F  TLDRG    +    L+     + L+G   ++LYDT G P D
Sbjct: 370 KKQTDIKEILDEEEVAFAVTLDRGEKQFEKYAALAIKSGKKKLSGADVWRLYDTFGFPED 429

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + + +   RGL   +           R +AR  S  +                   +F  
Sbjct: 430 LTKLMAEERGLTIDEAEVNEA-----REKAREASKAVKESVQ--------------EFAK 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFD 516
            ++ + ++                L       V+ I    E ++ +        + ++ D
Sbjct: 471 LNVHQIAELETSLNIPRPTSDAKFLKGDAKGKVQLIFNGKEFLKSSKDLPPKTPLGLLLD 530

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            T FYAE+GGQ+ DTG  I DG+        ++  G  VH+  +E G L     +    D
Sbjct: 531 NTNFYAESGGQVADTGRIIIDGVAEFKVLDVQEFGGYIVHNGFIEYGELTEGDEVTCEYD 590

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R+ +  NH+ TH+L+H+L  +LG  ++Q GS +  D LRFD +H   I   ++K IE
Sbjct: 591 ELRRQPIRNNHTGTHILNHSLREVLGDEINQKGSLVDQDRLRFDFSHKAAIPLEDIKKIE 650

Query: 637 DNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684
           D  N  I QNL   ++ ++        G  A+ G  Y + VRVVS+              
Sbjct: 651 DLSNHYIRQNLKAYSKEVDLDLAREIEGVRAVFGETYPNPVRVVSIGMEVDELLKNPKNP 710

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ--------------- 729
           +    S   CGGTHV +TG I  L IV ES I  GIRRI A TG+               
Sbjct: 711 EWRKISVEFCGGTHVENTGLIKDLIIVEESGIAKGIRRIVAYTGEGAHQAQRDAQVFSDK 770

Query: 730 ----RARSHLMGQDEKLKSLASFLK------VSQGNVVGRVEEIW----EEYRKLQLIHA 775
                A S+   +  ++K+ A  L       +++  +  R  +I     +E +K Q   +
Sbjct: 771 LEHINALSYGPQKAAEIKAAAVELDGLTISVLTKEELRTRFTKIQKEVVDEQKKRQKAES 830

Query: 776 KRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K  L       S  +  D   F+ H+    ++K +  V+   + K +   + +   SK+ 
Sbjct: 831 KTALDTVASHFSKDENKDSKVFVGHLPISANAKAISDVITYYKTKDKERSVYVFAGSKDD 890

Query: 835 KASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           +    + V   L      A       + V+GG  GG  P   Q  G    K ++A+    
Sbjct: 891 QVMHGVYVGTALSSKGVTAEQWTSAVSAVIGGKTGGKEPSR-QGAGAEPEKLEEAVKKAE 949

Query: 894 SFLKK 898
            +L +
Sbjct: 950 EWLSE 954


>gi|113195586|ref|NP_001037775.1| alanyl-tRNA synthetase, cytoplasmic isoform 1 [Danio rerio]
 gi|94734005|emb|CAK04586.1| alanyl-tRNA synthetase [Danio rerio]
          Length = 991

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/973 (31%), Positives = 474/973 (48%), Gaps = 96/973 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 31  TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 90

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 91  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 150

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 151 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 209

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 210 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 268

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++           G +      + +RV+ DH R
Sbjct: 269 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 328

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 329 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDAFPE 388

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG+   + GD A+ LYDT+G PLD
Sbjct: 389 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGESTTIPGDTAWLLYDTYGFPLD 448

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+ G+D+++F +    ++  A+  S G GSG  + I   +           
Sbjct: 449 LTALIAEERGM-GVDLLAFEE----EKKAAQLKSQGKGSGDEDHIMLDIYAI-------- 495

Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            D LR       D     K                 V A+ ++   V+E ++GQ+  V+ 
Sbjct: 496 -DELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLL 554

Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           D+T FYAE GGQ  D G  +        R++ T    +  G +V H     G L+    L
Sbjct: 555 DKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVGDRL 614

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E
Sbjct: 615 TLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDE 673

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682
           ++  E+    +IA    V              G  A+    Y D VRVVS+         
Sbjct: 674 VRRTEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLA 733

Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                 G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+      D
Sbjct: 734 DPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKAD 793

Query: 740 EK---LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVED 785
                L +LA  +K         Q  +    E +      ++RK ++  + + L+  ++D
Sbjct: 794 ALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDD 853

Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           L     ADV                     +  + S   +K L   +  L+        M
Sbjct: 854 LDRASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAM 913

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L  +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ+ G N   
Sbjct: 914 LFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQC 972

Query: 885 ADQAIAGVASFLK 897
             +A+   + F +
Sbjct: 973 IQEALQLASEFAR 985


>gi|118763839|gb|AAI28795.1| Aars protein [Danio rerio]
          Length = 966

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/973 (31%), Positives = 473/973 (48%), Gaps = 96/973 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++           G +      + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G PLD
Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGFPLD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+ G+D+++F +    ++  A+  S G GSG  + I   +           
Sbjct: 424 LTALIAEERGM-GVDLLAFEE----EKKAAQLKSQGKGSGDEDHIMLDIYAI-------- 470

Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            D LR       D     K                 V A+ ++   V+E ++GQ+  V+ 
Sbjct: 471 -DELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLL 529

Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           D+T FYAE GGQ  D G  +        R++ T    +  G +V H     G L+    L
Sbjct: 530 DKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVGDRL 589

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E
Sbjct: 590 TLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDE 648

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682
           ++  E+    +IA    V              G  A+    Y D VRVVS+         
Sbjct: 649 VRRTEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLA 708

Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                 G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+      D
Sbjct: 709 DPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKAD 768

Query: 740 EK---LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVED 785
                L +LA  +K         Q  +    E +      ++RK ++  + + L+  ++D
Sbjct: 769 ALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDD 828

Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           L     ADV                     +  + S   +K L   +  L+        M
Sbjct: 829 LDRASKADVQKRVLEKTKEIIESNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAM 888

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L  +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ+ G N   
Sbjct: 889 LFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQC 947

Query: 885 ADQAIAGVASFLK 897
             +A+   + F +
Sbjct: 948 IQEALQLASEFAR 960


>gi|297626345|ref|YP_003688108.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922110|emb|CBL56678.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 895

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/924 (34%), Positives = 467/924 (50%), Gaps = 70/924 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF   GH  +PS+SL+  NDPTL+F N+GMVPFK    G+    ++  
Sbjct: 1   MKAAEIGRRFVDFFVSKGHTEVPSASLL-YNDPTLLFVNAGMVPFKPYLMGELPAPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG+T RH TFF+MLGNFSFG YFK+ AI+ AW+L+T      
Sbjct: 60  TSIQKCVRTL----DIEEVGKTTRHGTFFQMLGNFSFGDYFKKEAIEFAWELVTGPLAEG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA   W  + G+  + I      DN+W M   G
Sbjct: 116 RLGFDPNMVWVTVLGPGFHPDYPEGDTEARDTWLSL-GVPPEHIQGRGLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +R++EIWNLVF   E      +++      +  
Sbjct: 175 PGGPCSEIYIDRGPKY-GAEGGPEADEDRFLEIWNLVFETEELSTVRSKEDFDIAGPMKT 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A ++Q   N Y+ D    +I+ +  + G +Y  +  + V  RV+ DH+
Sbjct: 234 RNIDTGAGLERIALLMQGVDNMYETDEVFPVIERAAAMAGKRYGADHTDDVRLRVVGDHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RSS  L+ DG+ P NE RGYVLRR+MRR +   RLLG  +  +  LL      M + YPE
Sbjct: 294 RSSLMLMTDGVTPGNEARGYVLRRLMRRTIRSMRLLGVEKVSLTELLDVSRQCMHATYPE 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397
           +      I++   +E E F +TL+ G  L D  ++         L GD AF+L+DT+G P
Sbjct: 354 IDDQWERIKDIADNESESFERTLNSGTQLFDMAVAEARAAGSNELGGDKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D  +F   +++Q++RA+A +        +   +      G T F
Sbjct: 414 IDLTLEMASEQGLH-VDETAFRTLMDQQKARAKADAKAKKGNLQDAESYRELRDRGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L                        V + V+ +V  G +V+   +GQ  EVV ++
Sbjct: 473 VGYSEL-----------------------TVPTRVRGLVADGHVVDHLRAGQLGEVVLEE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G    D    ++ DVQ+   G+ V H +   G LR    +   +D 
Sbjct: 510 TPFYAEMGGQDADAGVLRSDAGEFEVIDVQRPVPGLVV-HTVRAGGELRPGDEVQAMVDA 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            +R+     HSATH++H AL  ++G   +Q GS   P  LRFD   S  +++A    IE 
Sbjct: 569 VHRQGACQAHSATHIIHAALRELVGPTATQAGSYNKPGYLRFDFNSSHGLSAALKAEIEA 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +L V    M    A   GA A+ G KY D VRVV +    GG  S  LC GT
Sbjct: 629 RCNAAIRDDLEVSATQMPLAQAKGMGAMAMFGEKYPDIVRVVEM----GGPWSRELCAGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV    +I +L ++ E S+ AG RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVLHASQIGMLNLLGEQSVGAGTRRVEALVSTDAFEHMAAERALVNQLTGTLKVQPDQLT 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSV 812
            RV  + EE +  Q   A+ K    +            +  V+F S    +VD+  L+++
Sbjct: 745 DRVGALIEELKVAQKQIAELKAAQLLAGAPQLVSDAKDMWGVSFASKRYHDVDAGALRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
              ++ +    S ++ LVG S   K ++++  T    DR  NA  L R  A VLGG G G
Sbjct: 805 AGQVRDQFGDRSAVVALVGGSAT-KPALVVATTRAARDRGLNAGALVREGAGVLGGNG-G 862

Query: 870 GRPHMAQSGGPNGNKADQAIAGVA 893
           G+P +AQ GG +  KAD+A+  V 
Sbjct: 863 GKPDLAQGGGTDAGKADEALRTVE 886


>gi|213404528|ref|XP_002173036.1| alanyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212001083|gb|EEB06743.1| alanyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 961

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/964 (31%), Positives = 458/964 (47%), Gaps = 92/964 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            + +R+TF+++F+++GH  +PSSS+IP  DPTL+F N+GM  +K IF G   P       
Sbjct: 11  ANKVRSTFIDYFKEHGHTFVPSSSVIPFEDPTLLFANAGMNQYKPIFLGTVDPSSSFAKL 70

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDL++VG+ N HHT FEMLGN+SFG YFK+ AI LAW LLT+ F
Sbjct: 71  KRACNSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIPLAWKLLTEVF 130

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L+  +LY+T +          D EA  +W +  G+  +++I     DNFW M E GPCG
Sbjct: 131 KLNPDQLYVTYFGGHEESGLGPDLEAKNIWLE-MGIPPERVIPGNLKDNFWEMGEQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           +++    +EIWN+VFM+F ++       LP   IDTGMG 
Sbjct: 190 PCSEIHYDRI-GGRSVPELVNQDDPNVLEIWNIVFMEFNREKDGSLRPLPNKHIDTGMGF 248

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRS 281
           ER+ +V+Q K++NYD DLF  L Q  +++          G          +RV+ DH+R+
Sbjct: 249 ERLVSVVQNKSSNYDTDLFAPLFQKIQELTGARPYEGRMGEDDVDGIDTAYRVVADHVRT 308

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P NEGRGYVLRRI+RR   Y R    T        L   +  +MG  +PE
Sbjct: 309 LTFAISDGGVPNNEGRGYVLRRILRRGARYVRKKFNTPIGDFFSRLALVVAEQMGEFFPE 368

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLP 397
           +      ++E L  E+E F +TLDRG  + +   +   K E  +L G   ++LY+T+G P
Sbjct: 369 VRSKLEDVKEILDEEEESFSRTLDRGEKMFEQYAAAAQKTESKMLKGMDVWRLYETYGFP 428

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   +    GL  ID+  FN A    +  +R  +   G   T                
Sbjct: 429 VDLTHLMAEEAGLK-IDVEGFNAAQAHSKEISRRAAKAGGDSATMVTL------------ 475

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVV 514
              D+       K              +  +++ VKA+          E+  +G+ + ++
Sbjct: 476 ---DIHALGALAKMPEVPKTDDHFKHESGTINATVKALYHPSGFQTSTEKFEAGENIGIL 532

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D+T FYAE GGQ  DTG    DG         +   G  +H    E G L     ++  
Sbjct: 533 LDRTNFYAEQGGQEYDTGRITIDGKLEFRVTNVQVYGGYVLHTGFCEYGSLNVGDEVICE 592

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   RR L  NH+ TH+L+ AL  +LG  V Q GS ++P+ LRFD +H   ++  EL+ 
Sbjct: 593 YDELRRRPLMNNHTVTHILNFALREVLGEGVDQRGSLVSPEKLRFDFSHKAALSIKELER 652

Query: 635 IEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682
           +E+  N  IA+NL V  +          +G  A+ G  Y D VRVV V            
Sbjct: 653 VENICNQKIAENLRVYAKELPLAISKEIAGLRAVFGEVYPDPVRVVCVGADIDEIIKDPK 712

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQD 739
            E    +S   CGGTH+  TGEI    I+ ES I  GIRRI A+T   A          D
Sbjct: 713 NEQWRQYSIEFCGGTHLPKTGEIKDFVILEESGIAKGIRRIVAVTAADANQVCRIANEFD 772

Query: 740 EKLKSLASFLKVSQGNVVGRV--------------------------EEIWEEYRKLQLI 773
           ++L  LA+     +     ++                          ++  ++ +     
Sbjct: 773 QRLDRLAAMPHGPEKEAEIKLVTVDLSQLSVSALRKHAMKEKFTKITKQFQDQVKAANAK 832

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             K  ++   +    H  +   F+S +    + K L   +   +K +    + L+  +  
Sbjct: 833 EQKDAVKAVADYFEEHPESKF-FVSKLNVSPNPKVLNFAISYAKKNLAGKSLYLLASNGA 891

Query: 834 --KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
              K +   +V+++ L +  A + ++  + V+ GG  GG+    Q  G N +K DQAI  
Sbjct: 892 QPDKVAHACLVSQEALPKVTAQEWSQKVSHVV-GGRCGGKKDSCQGVGTNADKIDQAIEE 950

Query: 892 VASF 895
              F
Sbjct: 951 AIEF 954


>gi|226356938|ref|YP_002786678.1| alanyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|226318928|gb|ACO46924.1| putative alanine--tRNA ligase (Alanyl-tRNA synthetase) [Deinococcus
           deserti VCD115]
          Length = 891

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/921 (35%), Positives = 486/921 (52%), Gaps = 67/921 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58
             S IR  FL+FF+  GH  LPS S I   DPT +FT +GM PFK+ F G     +    
Sbjct: 6   TTSQIREKFLQFFESKGHLRLPSHSTIAP-DPTTLFTVAGMQPFKDQFMGAPAVFDGVAN 64

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + VTT QKCVR      D++NVGRT RH T FEM+GNFSFG YFK  AI  AWD LT  +
Sbjct: 65  KRVTTAQKCVRV----PDIENVGRTRRHLTLFEMMGNFSFGDYFKRDAILWAWDFLTGPE 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171
              +D  ++Y+T+Y +D+EAF  W +  GL A  I R   ++NFW          GPCGP
Sbjct: 121 WMGMDPDKMYVTIYKDDDEAFGYWTQEVGLDASHIHRFDADENFWPANAPLEGPNGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQN---KQER--FILPKMS 223
           CSEI++D+G               E  R++E+WNLVF Q+++Q+           LP  +
Sbjct: 181 CSEIYYDRGSNYGDDTWADYAQTRESARFLEVWNLVFPQYDRQDPAEDGTPVLKDLPFKN 240

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283
           IDTGMGLER+A+V+Q+  + Y  D+F+ ++    +++G  YEG   V+HRV+ +H+RS  
Sbjct: 241 IDTGMGLERVASVVQDVPDFYSNDVFRPIVDKVAELSGKPYEGEISVSHRVVAEHMRSVC 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            ++ADG   +N GRGY LR+I+RRA  +A LLG  EP +  + P +   MG AYPEL   
Sbjct: 301 MILADGTALSNTGRGYTLRKILRRASRHAYLLGMREPALYQIAPVVAAGMGDAYPELRTE 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  +E  +R+E+ERF KTL+ G+  L  +LS + +   L+G+ AF LYDT+G PLD+ ++
Sbjct: 361 QGRVEAAIRAEEERFLKTLEGGIQRLGSLLSGMPQGGTLSGEEAFVLYDTYGFPLDLTKE 420

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I    G   +D   + ++LE  ++ ARA S   G            E   AT+F+G+D L
Sbjct: 421 IAEEYG-ISVDEARYAESLENAQNIARAGS-KYGKSELFGGNQEALEGLSATEFVGFDHL 478

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                       V A+V  GE +    +G +  VV  +TPFY E
Sbjct: 479 E-----------------------AEGQVLALVGAGERLSHLSAGSEATVVLSRTPFYGE 515

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GG++GDTG    +G    + D +K   G+F+H  +VE+G L   +++   +  + +  +
Sbjct: 516 GGGEVGDTGRLEWEGGAGMVRDTRKTPAGVFLHDVLVEQGELTEGVTVRGVVGPERQ-AI 574

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             +H+ATHLLH AL  +LGS V Q GS +  D LRFD +H   +++ EL  +E  V+  I
Sbjct: 575 QRHHTATHLLHAALRAVLGSGVRQAGSLVAADRLRFDFSHGAALSAEELSRVETLVSRWI 634

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG----VHSSALCGGTHV 699
           + N PV  + M   +A A+GA AL G KY ++VRVVSVE +       V S  LCGG HV
Sbjct: 635 SANFPVTWQEMPIAEAKAAGATALFGEKYGEKVRVVSVEGDVEYGGQPVSSKELCGGAHV 694

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             TG+I    ++S+ ++ AG+RRIEA+ G+ A S +  +      +A+ L  S   +  R
Sbjct: 695 RRTGDIGAFVLLSDENVAAGVRRIEALAGEAATSWVRERLNGTARVAALLNTSPDGLEAR 754

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVED--------LSCHKIADVNFMSHIISEVDSKELKS 811
           V  +  + +  +   A  K QL                ++      +  +S ++  EL+ 
Sbjct: 755 VTGLQAQLKAAEKEVAAVKRQLAQAQMGSSSGGGAQTRELGGFRVAALKLSGIEGNELRG 814

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D L  +  + +++L       K  V+    + +    +A  L    A   GG G GGR
Sbjct: 815 AADKLLDQSGADLVVLAS----DKGLVVKASKDAVTRGAHAGQLVGKLAAAGGGKG-GGR 869

Query: 872 PHMAQSGGPNGNKADQAIAGV 892
           P MAQ+G  +   A  A+   
Sbjct: 870 PDMAQAGITDPVAALNALDTA 890


>gi|205830104|sp|A8LCW4|SYA_FRASN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 880

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/913 (35%), Positives = 481/913 (52%), Gaps = 56/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G  K  +   
Sbjct: 1   MDTAEIRRRFLNHFSERGHTVVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLKAPWNRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQKCVR      D+DNVGRT RH +FF+M GNFSFG YFK  AI  A++L+   +  +
Sbjct: 60  TSVQKCVRTV----DIDNVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELIVDGYGFN 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA  +W+ +  L A++I R    DNFWSM   GPCGPCSEI+FD+G 
Sbjct: 116 PDDLWATVYLDDDEAEAIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGP 173

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236
              G   G   + +RY+EIWNLVFMQF +    E        LP  +IDTGMGLERMAT+
Sbjct: 174 AY-GREGGPEADEDRYLEIWNLVFMQFARGEGSEYGYEIVGDLPARNIDTGMGLERMATI 232

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++ A+ ++TG +Y  + ++ V  RV+ DH R+++ LI+DG+ P+N
Sbjct: 233 LQGVENLYEIDISRPVLDAAGRLTGTRYGADPDSDVRLRVVADHTRTAAMLISDGVSPSN 292

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  L   +   MG  YPEL+     I     +E
Sbjct: 293 EGRGYVLRRMLRRAVRDARLLGAREPVMDELFGVVRAAMGPIYPELVDQAEAITAVAVAE 352

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  L D  ++         L+G+ AF+L+DT+G P+D+  D+    GL  
Sbjct: 353 ETAFLETLRTGTTLFDTAVTQARSSGSSQLSGESAFRLHDTYGFPIDLTMDMAADAGLT- 411

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + +E QR  A+A       G  +   +  +    G T F GY  L        
Sbjct: 412 VDEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGYTEL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          G  S +  IV    G+ +  A  G++V ++ D TPFYAE+GGQ  
Sbjct: 464 ---------------GRESGIVGIVGIGDGDSLTAAGEGEEVGILLDATPFYAESGGQEA 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    DG   ++ DVQ+    + +H   V  G LR    +   +D + RR +S +H+A
Sbjct: 509 DLGRIRFDGGEAEVLDVQRPVPDLVMHRVKVLGGELRVGADVFAEVDVERRRAVSRSHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H A    LG   +Q GS  +P  LRFD      +  + L  +ED VN+I  ++L V
Sbjct: 569 THLVHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEIALRDLEV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              + ++E+A   GA AL G KY DRVRVV     D G ++  LCGGTHV+S+ ++  + 
Sbjct: 629 RWYVTSQEEARRLGAMALFGEKYGDRVRVV-----DVGDYARELCGGTHVASSAQLGAIK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++SESSI AG RR+EA+ G  A   L  +   +  L+S LK     +  RV +I    R 
Sbjct: 684 LLSESSISAGTRRVEALVGMDAFRFLAREHVLVSQLSSTLKARPDELADRVADIVGRLRD 743

Query: 770 LQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823
            +    + + Q               +  V  ++  +     + +++ +   ++ ++   
Sbjct: 744 AEKELERLRAQAVLAGSAALAAGAEDVGGVALVTAQVPAGTPADDVRLLALDVRGRLAGR 803

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
             ++  +     A V+            A DL R S   LGG G GG+P +AQ G  + +
Sbjct: 804 PAVVAVVEAAGAAVVVATDETARTRGLRAGDLVRHSWAALGGKG-GGKPDVAQGGRGDAD 862

Query: 884 KADQAIAGVASFL 896
              +  A +   +
Sbjct: 863 MIPKVFARLRELV 875


>gi|94734006|emb|CAK04587.1| alanyl-tRNA synthetase [Danio rerio]
          Length = 966

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/973 (31%), Positives = 474/973 (48%), Gaps = 96/973 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++           G +      + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG+   + GD A+ LYDT+G PLD
Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGESTTIPGDTAWLLYDTYGFPLD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+ G+D+++F +    ++  A+  S G GSG  + I   +           
Sbjct: 424 LTALIAEERGM-GVDLLAFEE----EKKAAQLKSQGKGSGDEDHIMLDIYAI-------- 470

Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            D LR       D     K                 V A+ ++   V+E ++GQ+  V+ 
Sbjct: 471 -DELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLL 529

Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           D+T FYAE GGQ  D G  +        R++ T    +  G +V H     G L+    L
Sbjct: 530 DKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVGDRL 589

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E
Sbjct: 590 TLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDE 648

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682
           ++  E+    +IA    V              G  A+    Y D VRVVS+         
Sbjct: 649 VRRTEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLA 708

Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                 G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+      D
Sbjct: 709 DPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKAD 768

Query: 740 EK---LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVED 785
                L +LA  +K         Q  +    E +      ++RK ++  + + L+  ++D
Sbjct: 769 ALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDD 828

Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           L     ADV                     +  + S   +K L   +  L+        M
Sbjct: 829 LDRASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAM 888

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L  +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ+ G N   
Sbjct: 889 LFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQC 947

Query: 885 ADQAIAGVASFLK 897
             +A+   + F +
Sbjct: 948 IQEALQLASEFAR 960


>gi|158313530|ref|YP_001506038.1| alanyl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|158108935|gb|ABW11132.1| alanyl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 892

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/920 (35%), Positives = 484/920 (52%), Gaps = 70/920 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G  K  +   
Sbjct: 13  MDTAEIRRRFLNHFSERGHTVVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLKAPWNRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQKCVR      D+DNVGRT RH +FF+M GNFSFG YFK  AI  A++L+   +  +
Sbjct: 72  TSVQKCVRTV----DIDNVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELIVDGYGFN 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA  +W+ +  L A++I R    DNFWSM   GPCGPCSEI+FD+G 
Sbjct: 128 PDDLWATVYLDDDEAEAIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGP 185

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236
              G   G   + +RY+EIWNLVFMQF +    E        LP  +IDTGMGLERMAT+
Sbjct: 186 AY-GREGGPEADEDRYLEIWNLVFMQFARGEGSEYGYEIVGDLPARNIDTGMGLERMATI 244

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++ A+ ++TG +Y  + ++ V  RV+ DH R+++ LI+DG+ P+N
Sbjct: 245 LQGVENLYEIDISRPVLDAAGRLTGTRYGADPDSDVRLRVVADHTRTAAMLISDGVSPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  L   +   MG  YPEL+     I     +E
Sbjct: 305 EGRGYVLRRMLRRAVRDARLLGAREPVMDELFGVVRAAMGPIYPELVDQAEAITAVAVAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  L D  ++         L+G+ AF+L+DT+G P+D+  D+    GL  
Sbjct: 365 ETAFLETLRTGTTLFDTAVTQARSSGSSQLSGESAFRLHDTYGFPIDLTMDMAADAGLT- 423

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + +E QR  A+A       G  +   +  +    G T F GY  L        
Sbjct: 424 VDEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGYTEL-------- 475

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          G  S +  IV    G+ +  A  G++V ++ D TPFYAE+GGQ  
Sbjct: 476 ---------------GRESGIVGIVGIGDGDSLTAAGEGEEVGILLDATPFYAESGGQEA 520

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    DG   ++ DVQ+    + +H   V  G LR    +   +D + RR +S +H+A
Sbjct: 521 DLGRIRFDGGEAEVLDVQRPVPDLVMHRVKVLGGELRVGADVFAEVDVERRRAVSRSHTA 580

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H A    LG   +Q GS  +P  LRFD      +  + L  +ED VN+I  ++L V
Sbjct: 581 THLVHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEIALRDLEV 640

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              + ++E+A   GA AL G KY DRVRVV     D G ++  LCGGTHV+S+ ++  + 
Sbjct: 641 RWYVTSQEEARRLGAMALFGEKYGDRVRVV-----DVGDYARELCGGTHVASSAQLGAIK 695

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++SESSI AG RR+EA+ G  A   L  +   +  L+S LK     +  RV +I    R 
Sbjct: 696 LLSESSISAGTRRVEALVGMDAFRFLAREHVLVSQLSSTLKARPDELADRVADIVGRLRD 755

Query: 770 LQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823
            +    + + Q               +  V  ++  +     + +++ +   ++ +    
Sbjct: 756 AEKELERLRAQAVLAGSAALAAGAEDVGGVALVTAQVPAGTPADDVRLLALDVRGR---- 811

Query: 824 IIMLVG-----ISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
              L G        E   + ++V T++        A DL R S   LGG G GG+P +AQ
Sbjct: 812 ---LAGRPAVVAVVEAAGAAVVVATDETARTRGLRAGDLVRHSWAALGGKG-GGKPDVAQ 867

Query: 877 SGGPNGNKADQAIAGVASFL 896
            G  + +   +  A +   +
Sbjct: 868 GGRGDADMIPKVFARLRELV 887


>gi|294654445|ref|XP_456501.2| DEHA2A03652p [Debaryomyces hansenii CBS767]
 gi|199428887|emb|CAG84453.2| DEHA2A03652p [Debaryomyces hansenii]
          Length = 1021

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/965 (32%), Positives = 478/965 (49%), Gaps = 94/965 (9%)

Query: 4    VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S +R+TFL++F+ K  H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 79   ASRVRSTFLDYFKVKQNHTFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFST 138

Query: 59   -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
             +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLT+ 
Sbjct: 139  LKRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAISWSWELLTEV 198

Query: 118  FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + L+Q RLY+T +  DE        EA   W    G++ D I+     DNFW M + GPC
Sbjct: 199  YKLEQDRLYVTYFGGDEKQGLQPDLEAKNFWLA-VGVAEDHILPGNLEDNFWEMGDQGPC 257

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPCSEI +D+           + +    +E+WN+VFMQ+ ++       LP   IDTG+G
Sbjct: 258  GPCSEIHYDRI-GGRNASSLVNMDDPNVLEVWNIVFMQYNREPDSSLRSLPAKHIDTGLG 316

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
             ER+ ++LQ K++NYD D+F+ +     ++TG++                 +RVI DH+R
Sbjct: 317  FERLVSILQNKSSNYDTDVFQPIFNKIREITGVRPYTGKFGSEDRDGIDTAYRVIADHVR 376

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
            + +F I DG +P NEGRGYVLRRI+RR   Y R             L+P +  +    +P
Sbjct: 377  TLTFAITDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVPVVVEQNSEIFP 436

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
            E+++ +  + E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G 
Sbjct: 437  EILKNQQDLTEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 496

Query: 397  PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            P+D+ + +    GL  ID   F +A EE R  ++A +   G    +    +L E  G   
Sbjct: 497  PVDLTRLMAEEAGLK-IDEEGFEKAKEESREASKATNNKAGVSLIKLDVHALSELDG--- 552

Query: 457  FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                           D+              + + V AI      V+     G +  ++ 
Sbjct: 553  --------------NDKVPKTDDSFKYDIENIKANVVAIYNGSSFVDSISEAGSQAGILL 598

Query: 516  DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            D+TPFYAE+GGQ  DTG  + DG+        +   G  +H   +  G L+ E  ++ T 
Sbjct: 599  DKTPFYAESGGQEYDTGKLVIDGVAEFSVSNVQVYGGYVLHTGSLLEGSLKLEDEIIATY 658

Query: 576  DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
            D   R  +  NH+ TH+L+ AL  +LG +V Q GS + P+ LRFD +H + +T  EL  +
Sbjct: 659  DELRRWPIRNNHTGTHVLNFALREVLGDNVDQKGSLVAPEKLRFDFSHKQGLTPDELLKV 718

Query: 636  EDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVE-----------Y 683
            E   ND I +N  V  + +   DA    G  A+ G  Y D VRVVS+             
Sbjct: 719  ETISNDYIKENKQVYAKDIRLNDAKEIDGLRAVFGETYPDPVRVVSIGTSVEDLLKDPKN 778

Query: 684  EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             +    S  LCGGTHV+ TG+I  L I+ ES I  GIRRI A+TG  A        +  K
Sbjct: 779  SEWHKVSIELCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGTEAHQVQKVASDFDK 838

Query: 744  SL---------------ASFLKVSQGNVVGRV--------------EEIWEEYRKLQLIH 774
             L               A  L VS   +   V              + I ++ + +Q   
Sbjct: 839  ELDHTMGLASGPIKETKAKELGVSLKKLSISVLDKRSLNDKFNKLDKSIKDQLKAVQKEE 898

Query: 775  AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            +K+ L++    L+     D   +S +    ++K +   ++ L+K+ +S  I L+  S   
Sbjct: 899  SKKVLEVVNTWLNAEDAKDY-LVSFVPISANAKAITEAINLLKKQHKSKSIYLITGS--D 955

Query: 835  KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K +    V+++ + +  +A +LA   +  +GG   GG+ ++ Q  G      D+AI  + 
Sbjct: 956  KVAHGCYVSDEAIAKGIDATNLATAVSSKVGGKA-GGKGNVVQGMGDKPQGIDEAINELK 1014

Query: 894  SFLKK 898
                +
Sbjct: 1015 KLFAE 1019


>gi|303321650|ref|XP_003070819.1| Alanyl-tRNA synthetase, cytoplasmic , putative [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240110516|gb|EER28674.1| Alanyl-tRNA synthetase, cytoplasmic , putative [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1023

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/966 (30%), Positives = 465/966 (48%), Gaps = 96/966 (9%)

Query: 6    SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60
             +R TFL+FF+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       + 
Sbjct: 78   KVRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKR 137

Query: 61   VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
                QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L
Sbjct: 138  AHNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGL 197

Query: 121  DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  RLY+T ++         D E   LW    G+  D I+     DNFW M + GPCGPC
Sbjct: 198  EPDRLYVTYFEGNKDAGIEPDLETKDLWLS-VGVKEDHILSGNMKDNFWEMGDQGPCGPC 256

Query: 173  SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            SE+ +D+           + +    +EIWN VF+Q+ ++++     LP   +DTGMG ER
Sbjct: 257  SEVHYDRI-GGRNAAHLVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGYER 315

Query: 233  MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283
            + +VLQ+K +NYD D+F  L  A  ++TG++                 +RV+ DH+R+ +
Sbjct: 316  LVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDLDGIDTAYRVVADHVRTLT 375

Query: 284  FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341
            F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ 
Sbjct: 376  FAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPEIK 435

Query: 342  QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLD 399
            + +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D
Sbjct: 436  KKQTDVMEILDEEEISFAKTLDRGERQFEIYAQQAKDSGSNKLHGADVWRLYDTFGFPVD 495

Query: 400  IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
            + Q +   RGL+  ++          R +A+  S G     ++ +  S+ +         
Sbjct: 496  LTQLMAEERGLSIDNVEFEEA-----RLKAKEASKGQAKAASDLLKLSVHDL-------- 542

Query: 460  YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516
                     +++D+              + S + A+    E V+       G ++ ++ D
Sbjct: 543  -------SKLEKDKVPKTNDDAKFGRGNILSQIVAVYHDKEFVDSTSGIPEGDQIGIILD 595

Query: 517  QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            +T FYAE GGQ  DTG  I DG         +   G   H   ++ G L    S++   D
Sbjct: 596  KTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMYGGYVFHTGFIKYGNLSVGDSVISEYD 655

Query: 577  YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
               R  +  NH+ TH+L+ AL  +LG+ + Q GS +  + LRFD +H   ++ ++L+ IE
Sbjct: 656  ELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDLEKIE 715

Query: 637  DNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684
            +   + I QN  V ++ +        +G  A+ G  Y D VRVVSV              
Sbjct: 716  EKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVKDP 775

Query: 685  DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------- 736
                 S   CGGTHV  TG+I  L I+ E  I  GIRRI A+TG+ A             
Sbjct: 776  RWKGVSIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDAHEVQRIAKEFGDR 835

Query: 737  -----------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIHA 775
                        ++++ K + + L     + V +           +++ E  + LQ    
Sbjct: 836  LNRFEKMEIGPKKEQEAKLIQADLNQLSISAVEKARFREQFARIHKQVLEAQKALQKQEI 895

Query: 776  KRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
            K  L          +  D +  +  + +  ++K +   ++  + K++   I +     E 
Sbjct: 896  KAALDAINSHFEKPENKDSSHLIVRLPTSANAKAISESINHAKSKLKDKSIYVFAADAEQ 955

Query: 834  KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             + +    V+  L     +A + + + + ++ GG  GG+   +   G   ++ D+AI   
Sbjct: 956  GRVAHGCYVSSSLSAQGASASNWSGVVSGIV-GGKAGGKAPTSIGNGTEVDRVDEAIEAA 1014

Query: 893  ASFLKK 898
              +L++
Sbjct: 1015 TKYLEQ 1020


>gi|255003991|ref|ZP_05278792.1| alanyl-tRNA synthetase [Anaplasma marginale str. Virginia]
          Length = 879

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/909 (40%), Positives = 505/909 (55%), Gaps = 55/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++SSIR  FLEFF KNGH+L  S+ L+   D +L+FT++GMVPFK  FT           
Sbjct: 5   SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L +
Sbjct: 65  ASQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLSK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+ITVY ED+EAF +WKKI+G   D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGEH 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GG PGS   +G R+ E+WNLVFMQF +    E   LP   IDTGMGLE  A V+Q   
Sbjct: 185 VQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLE-TAAVVQGVC 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYD DLFK +I+ S+ V G     NN + HRVI DH+R+++FLI++G+ P NEGR YVL
Sbjct: 244 DNYDTDLFKAVIRKSQDVFGSP---NNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYVL 300

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356
           RRI+RRA+ YA  L  +   +  +LP L  E     MG AYPEL++ +  I  TLRSE E
Sbjct: 301 RRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEGE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            F  TL RG+ LL+  +  L   ++L GDVAFKLYDT G PLDI  DI   RGL   D  
Sbjct: 361 GFVDTLRRGMALLEKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQE 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            FN+ + EQ+  A     GL      ++W  L+ ++  T+F+GYD               
Sbjct: 420 GFNKGMGEQKGLASTGW-GLVKMLPHRLWEELQAQHKNTRFVGYDC-------------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V +I + G  V+   SG+K  ++ D +PFYAE+GGQ GD G   G
Sbjct: 465 ---------CSTKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSITG 515

Query: 537 DGI-------RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
                      +      +KA  + +H   +  G+     ++   ID   R +L  NHSA
Sbjct: 516 VSGVNNSGGANIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHSA 575

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           TH+LH  L T +  ++ Q GS +  D LRFD  ++  +T  ++  IE  VN  I  N PV
Sbjct: 576 THILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQITLIEREVNRRIMSNKPV 635

Query: 650 VTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +T   + E A+  GA AL G KY    VRVVS+        S  LCGGTHV  TG+I   
Sbjct: 636 LTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMGD------SKELCGGTHVRYTGDIGAF 689

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I  G+RRIEAITGQ     L    + L  ++  L V  G V   +E + +E  
Sbjct: 690 KIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEVSEGLERLLKEKL 749

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L+        ++    +S       V         +    +   M + + K + GI   
Sbjct: 750 ELKKKLVCAWHEIIKSSISPVNCGAGVVLHCGYFPTIPVDAIMEFMKSAR-KAERGIFA- 807

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + + KA ++I V +       A +L +  A +   G GGG   +A+          +
Sbjct: 808 IATAVDGKAVLIIGVGDTANKVLGASELVKTLADL--QGKGGGNAGLARVS-LEVGNVQE 864

Query: 888 AIAGVASFL 896
           A++ + + +
Sbjct: 865 ALSTILNKV 873


>gi|261838564|gb|ACX98330.1| alanyl-tRNA synthetase [Helicobacter pylori 51]
          Length = 847

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/891 (36%), Positives = 479/891 (53%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK++FTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDVFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYRVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNAFVGYETTECLAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + +A   Q+  V+ ++TPFYAE GG +GD G    D   + I
Sbjct: 467 --------------DFKEITKANPNQEAWVLLEKTPFYAEGGGAIGDRGTLFKDNEEVAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL   L  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSTLREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        + ++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHEKLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG +  K   A+    +
Sbjct: 793 NAP---IKANAWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALNLAKN 839


>gi|242012157|ref|XP_002426803.1| Alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212510999|gb|EEB14065.1| Alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 983

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/971 (30%), Positives = 464/971 (47%), Gaps = 95/971 (9%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           +   +R TF++FF +K  H+ + SSS IP +DPTL+F N+GM  FK IF G   P     
Sbjct: 5   SSKEVRQTFIDFFIKKKQHQYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSDMA 64

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT 
Sbjct: 65  KWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWELLTT 124

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +   RLY+T +        + D E  K+W  + G+    ++     DNFW M ETGP
Sbjct: 125 VYHISPDRLYVTYFGGDSASGLEPDSECKKIWIDL-GVPESHVLPGNMKDNFWEMGETGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           +++    +EIWNLVF+QF ++       LPK  ID GM
Sbjct: 184 CGPCSELHYDRIGN-RNASHLVNQDDPDVLEIWNLVFIQFNRETDGSLKTLPKRHIDCGM 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           G ER+ +V+Q K +NYD D+F  L  A ++ TG                 + +RV+ DH 
Sbjct: 243 GFERLVSVIQNKRSNYDTDIFTPLFDAIQKGTGSPPYKGKVGAEDVDGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG  P N GRGYVLRRI+RRA+ Y    L         L+  +C  +G  + 
Sbjct: 303 RTLTIALADGGRPDNVGRGYVLRRILRRAIRYGTEKLNTKPKFFSSLVKTVCDTLGDTFS 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I E +  E+E+F KTL RG  LL+  ++ +GK ++L GDVA++LYDT+G P+
Sbjct: 363 EIRRDPDTIMEIINEEEEQFLKTLSRGRNLLNRTIAKIGKSKVLPGDVAWRLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-------K 451
           D+ Q +   +GL+              R +A+  S G      + I   +         K
Sbjct: 423 DLTQLMAEEKGLSVDMTGYEEA-----RKQAQLLSQGKEGKVDDGIALDVHAITELQNLK 477

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
              T                 +     K          + + AI  + + V+   SG+K 
Sbjct: 478 IPPTD---------DSPKYNYKAKQQDKNAEYEFQKCEAKITAIRHKKKFVDSINSGEKC 528

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            ++ D+T FYAE GGQ+ D G  I  +   ++ +    + +  +V H     G+ +   +
Sbjct: 529 GILLDRTLFYAEQGGQIFDEGYMIKKNDENVEFSIYNVQVKAGYVLHFGTTEGVFKKGDT 588

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL +D   RR +  NH+ TH+L+ AL  +LGS   Q GS + PD LRFD T+   +T  
Sbjct: 589 VVLHLDTARRRLVMNNHTGTHILNFALREVLGSGCEQKGSLVAPDRLRFDFTNKSAMTPD 648

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE------- 682
           ++K+ ED+V  +IA+N  V  +          +G  A+    Y D VR+VSV        
Sbjct: 649 QIKAAEDSVKRVIAKNCEVFAKNTPLAVAKTVNGVRAMFDEHYPDPVRIVSVGAAVEDLV 708

Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                  G    +  CGGTH+  +G +    I SE +I  GIRRI A+TG  A   L   
Sbjct: 709 ANPSSSLGMSVPAEFCGGTHLHRSGHVGDFVISSEEAIAKGIRRIVALTGPEASKALKKA 768

Query: 739 ---DEKLKSLASFLKVSQGN--VVGRVEEIWEE--------YRKLQLIHAKRKLQLNVED 785
              + ++  +   +  S     +  ++  + ++        ++K +L +A + L+  ++D
Sbjct: 769 AILENEVNEIKQKMNDSSAQKMIPKKIISLTDDISHAVIPYWKKEELRNALKVLKKQLDD 828

Query: 786 LS--------------CHKIADVN----FMSHIISEV-DSKELKSVMDALQKKIQSGIIM 826
                             KI + N    F+   +    ++K + + +  ++    +   M
Sbjct: 829 KERANKAALAAGVVEQAKKIIEANLNKPFIVAEVKAFSNNKAVDTALKQVKALSPNTAAM 888

Query: 827 LVGISKE-KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
              +  +  K   L  V +       +A D     + +L  G GGG+   AQ  G N + 
Sbjct: 889 FFSVDPDANKIFYLASVPKSANSQGLSAGDWVNHVSPLLK-GKGGGKAESAQGSGSNFSA 947

Query: 885 ADQAIAGVASF 895
            ++A+     F
Sbjct: 948 LNEAMDAARKF 958


>gi|30694735|ref|NP_175439.2| ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/
           ligase, forming aminoacyl-tRNA and related compounds /
           nucleic acid binding / nucleotide binding [Arabidopsis
           thaliana]
 gi|21542451|sp|P36428|SYA_ARATH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS; Flags: Precursor
 gi|332194403|gb|AEE32524.1| Alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 1003

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/956 (31%), Positives = 459/956 (48%), Gaps = 89/956 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P          
Sbjct: 64  VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 123

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L 
Sbjct: 124 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 183

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCGPC+
Sbjct: 184 TDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 241

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG ER+
Sbjct: 242 EIHYDRIGNRD-AASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 300

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+ SF
Sbjct: 301 TSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSF 360

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL + 
Sbjct: 361 AIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEH 420

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  I + ++ E+  F KTL +G+           +   L+GD AF L+DT+G PLD+ Q 
Sbjct: 421 EKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDLTQL 479

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   RGL  +D+  FN+A+EE R R+R+       G                     D  
Sbjct: 480 MAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 521

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S   K                   S +KAI      +E + +   V +V   T FYAE
Sbjct: 522 ATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAE 581

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQ+ DTG   G      + +VQ      + + +   E G +     ++  +DY+ R+ 
Sbjct: 582 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKL 641

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  VN  
Sbjct: 642 IAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 701

Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690
           I   L V ++     +A    G  A+ G  Y D VRVVS+              +  + S
Sbjct: 702 IKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLS 761

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746
           S  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L       + +     
Sbjct: 762 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 821

Query: 747 ----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784
                     S LK              ++  ++  +  E RK Q   A++ L+ +V+  
Sbjct: 822 AEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLA 881

Query: 785 --DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                        F    +   +D+  ++  +  + +K    I++        KA V   
Sbjct: 882 TEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAVVCAG 941

Query: 842 VTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           V E  D     +  +    +   L G  G G+  +A   G + ++   A+   +SF
Sbjct: 942 VPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSF 997


>gi|225423779|ref|XP_002277341.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1002

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/959 (32%), Positives = 456/959 (47%), Gaps = 89/959 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
            + +R TF+ FF+   H    SS ++P NDPTL+F N+GM  FK IF G   P       
Sbjct: 60  ANKVRDTFINFFESKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 119

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK +
Sbjct: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 179

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        EA  +W K   L    ++     DNFW M +TGPCG
Sbjct: 180 KLPTDRIYATYFGGDEKSGLSPDTEARDMWLKF--LPPGHVLPFGCKDNFWEMGDTGPCG 237

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI FD+           + +    IEIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 238 PCTEIHFDRIGNRD-AASLVNNDDPTCIEIWNLVFIQFNRESDGSLKSLPAKHVDTGMGF 296

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ ++LQ K +NYD D+F  +  A +Q TG +               + +RV+ DH+R+
Sbjct: 297 ERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDADKVDMAYRVVADHIRT 356

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRRI+RRA+ Y    L   E      +  +   MG  +PEL
Sbjct: 357 LSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNSFVNIVVKVMGDVFPEL 416

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            Q ++ I E +  E+  FGKTL +G+         +   +ILNG  AF L+DT+G PLD+
Sbjct: 417 KQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEVQ-GKILNGQDAFVLWDTYGFPLDL 475

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  +D+  FN AL+E R R+R+       GT                    
Sbjct: 476 TQLMAEERGLI-VDVQGFNAALDEARERSRSAQNKQAGGTIVM----------------- 517

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D    S   K                   S++KAI    E +E A +G +V +V + T F
Sbjct: 518 DADATSALHKRGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLESASAGNEVGIVLETTSF 577

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI-FVHHAIVERGILRTEMSLVLTIDYQN 579
           YAE GGQ+ DTG   G     Q+ +VQ     I  +       G       ++  +DY  
Sbjct: 578 YAEQGGQIFDTGSLEGTSGSFQVCNVQIYGGFILHIGSFTEASGRFSVGDKVICKVDYDR 637

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KP+    L+ IE  V
Sbjct: 638 RKVIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVHPDHLRKIESIV 697

Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDGG 687
           N+ I   L V ++  +  DA + +G  A+ G  Y D VRVVS+             E   
Sbjct: 698 NEQIDAELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPGNEKWL 757

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S+ LCGGTH+S+T E     ++SE  I  GIRRI A+T   A   +       + +  
Sbjct: 758 SISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDVAFKAIELARSLEQEVDD 817

Query: 748 FLK------------------------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
             K                          + ++  ++  + ++ RK Q   A+  +Q  V
Sbjct: 818 ASKTEGISLEKKVASLRSRVDSAPIPAARKADLRAKISLLQDQVRKAQKKFAEENIQKAV 877

Query: 784 ED----LSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +               F    +   +D+  ++  +  + ++    +++        KA V
Sbjct: 878 KAATDMAQLAASDGKTFCISHVDVGLDTTAVREAVLKVIEQKGISVMIFSTDETTNKAVV 937

Query: 839 LIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
              V +  D   +    +    +   L G  G G+  +AQ  G + +   +A+    +F
Sbjct: 938 YAGVPQKGDKAKQLEVSEWLTAALGPLKGRCGKGKGGLAQGQGTDASHVKEAMDVAENF 996


>gi|189501991|ref|YP_001957708.1| alanyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497432|gb|ACE05979.1| hypothetical protein Aasi_0578 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 879

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/923 (34%), Positives = 481/923 (52%), Gaps = 72/923 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S+IR  F++FF++  H  + ++ ++   DPTL+FTN+GM  FK+ F  Q++  YQ 
Sbjct: 1   MLCSSNIRQKFVDFFKQKDHHHVKAAPIVNKEDPTLLFTNAGMNQFKDFFLNQQEAPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+ + L
Sbjct: 61  AISTQPCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGEYFKEEAIACAWELLTEVYKL 120

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            Q RLY+TV+  DE        E+   W+K   +S D+I+     DNFW M +TGPCGPC
Sbjct: 121 PQERLYVTVFQGDEEESLELDQESLNTWEKY--ISRDRILYGNKKDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +    + IEIWNLVF+Q+ +    +   LP   +DTGM
Sbjct: 179 SEIHVDIRTEEEIQQQAGKELVNTGHPQVIEIWNLVFIQYNRLASGQLMELPAKHVDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ K++ YD D+F  LI    +++   Y  +N   +  RV+ DH+R+ +F I
Sbjct: 239 GFERLTMVLQGKSSTYDTDIFVPLIHNIMRLSHKTYGKDNKVDIAMRVVADHIRAITFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ Y    LG+  P M  L+  L  +  + YP++ Q + 
Sbjct: 299 ADGQLPSNTQAGYVVRRILRRAVRYGYTNLGFETPFMYQLVSILAQQFKNVYPQIKQQQS 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
            IE+ ++SE+E F KTL  GL  L+ +    ++   ++++G  AF+LYDT+G P D+ + 
Sbjct: 359 YIEQVIKSEEESFFKTLAVGLHRLEHISETLNINGQQVIDGPTAFELYDTYGFPPDLTRL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I   +GL  +D   F +AL+ QR R++           E+  + +  K   + FIGYD L
Sbjct: 419 IAQEKGLE-VDEEGFQKALQNQRIRSQQA------AVLEQGDWHIVVKDVDSVFIGYDQL 471

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                + + R                    +I Q+GE +         ++V DQTPFY E
Sbjct: 472 ELIAKVIQYR--------------------SIYQKGEEI--------YQIVLDQTPFYPE 503

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I     + + D +K+ E I                ++   +D + R  +
Sbjct: 504 GGGQVGDTGTLIVGEQIIAVFDTKKEYERIIH---YTHELPHDLHATVQAVVDVKKRNLI 560

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLLH AL  +LGSH+ Q GS +    LRFD  H   ++  +++ IE  VN  I
Sbjct: 561 ASNHSATHLLHAALRQVLGSHIEQKGSLVNEKLLRFDFPHYTKVSPEQIREIEHIVNQKI 620

Query: 644 AQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+ +   R M  EDA + G  AL G KY + VRV++ +       S  LCGGTH S+T
Sbjct: 621 RANINLHEVRSMLLEDAKSMGVTALFGEKYGEYVRVITFDPY----FSKELCGGTHASAT 676

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G++    I +E+ I AG RRIEAIT   A + ++ Q   L      LK    ++V  +  
Sbjct: 677 GKLGFFKITAETGIAAGTRRIEAITADAAENFIIEQLSILNQATEALK-KPNDLVKSIYH 735

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE   L+      + Q     +        ++ ++  +   +   + + LK V  + +
Sbjct: 736 LLEEKANLEKKILSYQAQEVRSVIDNLYQHIKQVQEIQVLIEEVKVPNVEALKQVALSFR 795

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMA 875
                  + L  I  +++  + + ++E+L+ +   NA  + +  A ++ GGG GG+P  A
Sbjct: 796 TNKGPFFLTLTSI-IDQQPHIALFISEELIHKTQMNANIIIKELATLIQGGG-GGQPFFA 853

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
            + G + +  +Q +      L+K
Sbjct: 854 TAKGNDASGINQVLVTARHILEK 876


>gi|328874134|gb|EGG22500.1| alanyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 961

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/981 (29%), Positives = 458/981 (46%), Gaps = 106/981 (10%)

Query: 1   MSNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56
           M++V+ IR TF++FF +   H  +PSSS+IP +DPTL+F N+GM  FK IF GQ  P   
Sbjct: 1   MTSVNEIRKTFIDFFSEKCQHTFVPSSSVIPHDDPTLLFANAGMNQFKPIFLGQADPRSE 60

Query: 57  --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
               +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LL
Sbjct: 61  QAKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAITWAWELL 120

Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T  + LD+ RLY + +        + D EA  LW +   L A++++     +NFW M +T
Sbjct: 121 TVVYKLDKERLYASYFGGDAAKGLEADTEARDLWLQF--LPAERVLPFGMKENFWEMGDT 178

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPCSEI FD+ E   G     + +    IEIWN VF+Q+ ++  +    LP   +DT
Sbjct: 179 GPCGPCSEIHFDKVEGRKGAAALVNADDPTLIEIWNNVFIQYNREADKSLRPLPNKHVDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIV 276
           GMGLER+ +++Q    NYD D+F  +    ++VTG                  + +RVI 
Sbjct: 239 GMGLERLTSIIQNVGTNYDTDIFMPIFAEIQKVTGYPHPYGGKVGSDDPEQVDMAYRVIA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH+R+ SF IADG +P++EGRG VLRRI+RRA+ Y  + L         L+  +    G 
Sbjct: 299 DHIRTLSFSIADGAVPSSEGRGQVLRRILRRAVRYGKQKLNAPSGFFAKLVDIVVQNFGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDT 393
            +PEL      I   L  E++ F + LDRG+V  D ++  + +   ++     A+ LY +
Sbjct: 359 FFPELRNRPQHIVSVLEREEKMFARALDRGIVEFDRMVDKVKQQGSKVFPASNAWYLYSS 418

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
            G P+D+ + ++  +GL  +D+  + +  +E   R R       +               
Sbjct: 419 FGFPIDLTKLMVDEKGLE-LDMDGYQKLADEDAERGRLRQRSKKTEMNM----------- 466

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK--- 510
                          ++ D               + ++VKAI      V    S      
Sbjct: 467 --------QAEPISILQGDGVKPTIDSHKYEQKEIETVVKAIYDGKVFVNSLESTDTTRN 518

Query: 511 --VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK----AEGIFVHHAIVERGI 564
               +V + T FY E GGQ+ D G       +  I +V          + + +   +   
Sbjct: 519 TVYGIVLESTNFYPEQGGQIYDIGNINSVVDQTTIFNVSDCKVFGGYVVHIGYITADAAA 578

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           ++    + LT+DY  R  +  NH++TH+++ AL  +LG +V Q GS +    LRFD ++ 
Sbjct: 579 IKVGDKVELTVDYTRRSPIMSNHTSTHMINFALRNVLGDNVEQRGSLVDDSKLRFDFSND 638

Query: 625 KPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE- 682
           + +T  E+  ++  VND+IA+ LP     +        +G  A+ G  Y D VRVVSV  
Sbjct: 639 RGMTRQEIIKVDQIVNDLIAKELPVSCKEVDLARAKTINGLRAVFGEVYPDPVRVVSVGK 698

Query: 683 ----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
                       +   +S   CGGTH++++ +     I SE ++ AGIRR+ A+TG  A 
Sbjct: 699 SVDELLANPTNPEWTQYSIEFCGGTHINNSKDAEYFAITSEEALAAGIRRVVAVTGSDAT 758

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK-------------- 778
                  +         K +   +   +  +     + Q   +  K              
Sbjct: 759 VVFENNKKLQARFQEATKFTGKELKDAIPTLTALLNEHQGKISASKKFELVEILSSIQEL 818

Query: 779 LQLNVEDLSCHKIADVNFMSHIISE--VDSKE---------------LKSVMDALQKKIQ 821
            +   ++   + I +   +   IS   V+SK                +   + ++QKK  
Sbjct: 819 AKKQYKEEEANLIKEAQVLVDQISNQLVESKSPIYVGTINAGLSNTLMSDSIKSIQKKCP 878

Query: 822 SGIIMLVGISKE-KKASVLIVVTE---DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
              ++L+   +E  K  V+ +V +          A D     +  LGG G GG+P +AQ 
Sbjct: 879 DTSVLLISKDEEKGKICVISIVPKGSTAETKGLKANDWVVKVSAALGGKG-GGKPDVAQG 937

Query: 878 GGPNGNKADQAIAGVASFLKK 898
            G +  K D+A+    SF +K
Sbjct: 938 AGTDIAKIDEALEFAKSFAQK 958


>gi|297380421|gb|ADI35308.1| alanyl-tRNA synthetase [Helicobacter pylori v225d]
          Length = 847

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/891 (36%), Positives = 480/891 (53%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMGEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G+  +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGVC-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTECSAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + +A   Q+V V+ ++TPFYAE GG +GD G    D     +
Sbjct: 467 --------------DFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKDDEEAAM 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LG 
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGP 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKVLNDEELEKVEDLVNTQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + +  ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENELITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKG-GGRGDFASAGGKDIENLQAALNLAKN 839


>gi|296231556|ref|XP_002761188.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic [Callithrix jacchus]
          Length = 968

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/969 (32%), Positives = 476/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F+EFF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIEFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLEDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKILSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-LVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRAQG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            ++   S                 +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 478 LEVTDDSPK----YNYHSDSSGNYVFENTVATVLALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +     +  + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSNEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVV-----------SVEY 683
           E+  N++I    PV T+           G  A+    Y D VRVV               
Sbjct: 653 EEIANEMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSVGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +    
Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKT 772

Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL+   + +K       +V   + ++ E        +++K +L    + L+  ++DL   
Sbjct: 773 SLSLMEAKVKAQTAPNKDVQREIADLGEVLATAVIPQWQKDELRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|317013025|gb|ADU83633.1| alanyl-tRNA synthetase [Helicobacter pylori Lithuania75]
          Length = 847

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/891 (36%), Positives = 485/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF+  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQVLLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFVPLMEEISELTSLDYTSEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K  + +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKETVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L+HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFENCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTECPAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + +A   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 467 --------------DFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGVLLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VSDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLKSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 737 MDLPVEKIHGVDLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKG-GGRGDFASAGGKDIENLQAALNLAKN 839


>gi|198437569|ref|XP_002125465.1| PREDICTED: similar to alanyl-tRNA synthetase [Ciona intestinalis]
          Length = 967

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/978 (31%), Positives = 453/978 (46%), Gaps = 104/978 (10%)

Query: 3   NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           N   +R  FL FFQ+   H  + SSS IP +DPTL+F N+GM  FK+IF G   P     
Sbjct: 6   NSKQLRQMFLSFFQEKYAHTYIHSSSTIPLDDPTLLFANAGMNQFKSIFLGTISPADPLS 65

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             + V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG +SFG YFK+ AI  AW+LLT+
Sbjct: 66  KCKRVVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGCWSFGDYFKKDAINWAWELLTE 125

Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              + + RLY T ++         D E   LW +   L AD I+     DNFW M + GP
Sbjct: 126 VLKIPKDRLYATYFEGSEEYNVPVDTEVQNLWLQ--HLPADHILPGNMKDNFWEMGDVGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI FD+           + +    +E+WNLVFMQF ++   +  +L K  +DTGM
Sbjct: 184 CGPCTEIHFDRI-GGRNAAHLVNMDDPEVLEVWNLVFMQFNREKDGKLKLLAKQHVDTGM 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQAS---------EQVTGMKYEGNNIVNHRVIVDHL 279
           GLER+ +V+Q K +NYD D+F  L +A          +   G        + +RV+ DH+
Sbjct: 243 GLERLVSVIQGKLSNYDTDMFTPLFKAIQLGTGAREYQGKVGKDDVDGVDMAYRVLADHI 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RRA  +A   L         L+  +   +G A+P
Sbjct: 303 RTLTIALSDGGRPDNVGRGYVLRRILRRATRFAVEKLNAKPRFFSSLVHVVVDILGEAFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLP 397
           E+I+   ++ + +  E+E+F KTL+RG  +L+  +  L  D ++  G+ A+ LYDT+G P
Sbjct: 363 EIIRDPQMVIDIIDEEEEQFLKTLNRGRKILNQKIKSLDADAKVFPGETAWLLYDTYGFP 422

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL--KEKYGAT 455
            D+ + +    GL  +D  SF +     +++AR  S G      + I   +         
Sbjct: 423 FDLTEIMAEESGLT-VDCESFEK----AKAQARITSKGFAQDVADTICLDVHMLTDLKEK 477

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +F                +              + +VKAI+Q    V    SG +  ++ 
Sbjct: 478 KF-------PPTDDSFKYQYSSNDNGEYSFPACTGVVKAILQNKTFVTSVSSGAECGILL 530

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQL D G          + T    + +G +V H     G L    S+ L 
Sbjct: 531 DKTCFYAEQGGQLFDLGYFKKQEDEFTEFTVKNCQVQGGYVLHVGTVAGTLEVGDSVELF 590

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID Q R+ L  NHS TH+L+  L  +LG    Q GS + P+ LRFD T  K +TS ++K 
Sbjct: 591 IDEQRRQSLMKNHSCTHILNFGLRCVLG-EADQRGSLVAPNRLRFDFTAKKAMTSQQVKE 649

Query: 635 IEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682
            ED  N I+ ++  +  + +   +     G  A+    Y D VRV+SV            
Sbjct: 650 TEDVCNQIVNKDEVIYAKPVPLDQAKAIHGLRAIFDETYPDPVRVLSVGVSVDSLVADPN 709

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
           ++     S  LCGGTH+  +G      I+SE +I  G+RRI A+TGQ A       + K 
Sbjct: 710 FDAAMNTSVELCGGTHLLRSGHADKFIIISEEAISKGVRRIVAVTGQEALKA----ERKA 765

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLI---------------------------HA 775
             LA   +  +  V   +    E Y+                                  
Sbjct: 766 NLLAKSFETIKSEVEKGLVNNKENYKTFSKKCTDFIELVSQASISQWRREEMRGFASSLK 825

Query: 776 KR-------------KLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQ 821
           K+             KL L     S  +  +  F+   +    ++K L   +   + +  
Sbjct: 826 KKVDDVDRVMKENATKLALAQTKESIQQDPNATFVVTELKTNGNAKSLNEALKIYKSESP 885

Query: 822 SGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
              +ML  I KE  K   L  V     D+   A    +  A  L  G GGG+   AQ+ G
Sbjct: 886 DTSVMLFSIDKEANKIVCLSQVPASANDKGLTANGWVQSIATTLN-GKGGGKSTSAQAVG 944

Query: 880 PNGNKADQAIAGVASFLK 897
            N +  ++AI     F K
Sbjct: 945 RNPDGLNEAIQLAKEFAK 962


>gi|15645855|ref|NP_208033.1| alanyl-tRNA synthetase [Helicobacter pylori 26695]
 gi|3024653|sp|P56452|SYA_HELPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2314404|gb|AAD08285.1| alanyl-tRNA synthetase (alaS) [Helicobacter pylori 26695]
          Length = 847

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/892 (36%), Positives = 484/892 (54%), Gaps = 57/892 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GH + PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+E F +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVVKECFEEEEHFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G    D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGACA-DMQGFELCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                S+ V        + + +A   Q+V V+ ++TPFYAE GG +GD G    D   + 
Sbjct: 456 ----CSAKVLGFFDSDFKEITDANPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNGEVA 511

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LG
Sbjct: 512 IVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RFEIAKHHSATHLLQSALREVLG 569

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A   
Sbjct: 570 SHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDK 629

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RR
Sbjct: 630 GALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRR 684

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q           
Sbjct: 685 IEAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APV 735

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V
Sbjct: 736 SMDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGV 791

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                    A   A   A++LGG G GGR   A +GG +      A+    +
Sbjct: 792 KNAP---IKANVWANEVAQILGGKG-GGRGDFASAGGKDIENLQAALNLAKN 839


>gi|210135400|ref|YP_002301839.1| alanyl-tRNA synthetase [Helicobacter pylori P12]
 gi|210133368|gb|ACJ08359.1| alanyl-tRNA synthetase [Helicobacter pylori P12]
          Length = 847

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/891 (36%), Positives = 483/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF+  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMGEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFELCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTECPAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + EA   Q+V V+ ++TPFYAE GG +GD G          I
Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKGNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K +   EL+ +ED+VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDSVNAQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 737 MDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKG-GGRGDFASAGGKDIENLQAALNLAKN 839


>gi|317009923|gb|ADU80503.1| alanyl-tRNA synthetase [Helicobacter pylori India7]
          Length = 847

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/891 (36%), Positives = 483/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++    +T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISGLTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +    +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSHTHAYLKESKEMVVKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL K++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNKNKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+    +                 
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFVGYETTECTTKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + +A   Q+V V+ ++TPFYAE GG +GD G    D     I
Sbjct: 467 --------------DFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VSDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        + ++LK+  + LK +  +V+  + ++ E  +  Q +          
Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKTLLKNN--DVIAGINKLKESVKNSQKVPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 738 -DLPVEKIHGVDLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG +      A+    +
Sbjct: 793 NAP---IKANMWANEVAQILGGKG-GGRGDFASAGGKDIENLQAALNLAKN 839


>gi|315587131|gb|ADU41512.1| alanine--tRNA ligase [Helicobacter pylori 35A]
          Length = 847

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/891 (36%), Positives = 485/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH +  S  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAIYSSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFAGYETTECSAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ +L+    ++  +  +   +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-VLKKGDQVIAQVSDER-LEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNTQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APIS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG +  K   A++   +
Sbjct: 793 NAP---IKANAWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALSLAKN 839


>gi|227495468|ref|ZP_03925784.1| alanine--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831015|gb|EEH63398.1| alanine--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 895

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/928 (33%), Positives = 480/928 (51%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   + E+FQ+NGHE+ PS  L+   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEIAHRWKEYFQRNGHEIRPSVPLVSP-DPSILFTIAGMVPFIPYIIGTEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL-----TK 116
            +VQKC+R     ND++NVGRT RH TFF+M GNFSFG YFKE AI  AW+LL     T 
Sbjct: 60  ASVQKCLRT----NDIENVGRTTRHGTFFQMNGNFSFGDYFKEGAIDFAWELLTGSQETG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+++ED E++ +  +  GL    I+R+  ++NFW   + GP GPC+E  
Sbjct: 116 HYGLDGDRLWVTLWEEDAESYDVLTRKIGLDPKHIVRLPRHENFWDTGQPGPAGPCAEWH 175

Query: 177 FDQGECIPGGLPGSSEE--GERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGM 228
           +D+G        G + +  G+RY+EIWNLVF Q+ +  +      P        +IDTG 
Sbjct: 176 YDRGPSYGPEAVGGNVDPGGDRYLEIWNLVFDQYLR-GEGSGKDYPLLGELDAKAIDTGA 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSF 284
           GLER+A V+Q K N Y+ID  + +I A+E ++G  Y    +  + V  R++ DH+RSS  
Sbjct: 235 GLERLAFVMQNKPNMYEIDEVRPVISAAEMMSGRTYLGGGDPEDDVRMRIVADHIRSSMM 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG++P N+GRGYVLRR++RRA+   RLLG     +  L+P     M ++YP+L    
Sbjct: 295 LINDGVVPGNDGRGYVLRRLIRRAVRSMRLLGVDTATLPTLMPVSRDAMKASYPDLETNW 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG---KDEILNGDVAFKLYDTHGLPLDIM 401
             I +   +E+E F +TL  G  +LD  ++          L+G+ AF+L+DT+G P+D+ 
Sbjct: 355 ERIADVAYAEEETFRRTLSAGTTILDTAVAKAKAAGSATKLSGEEAFQLHDTYGFPIDLT 414

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKY-GATQFIG 459
            ++   +G   +D   F + + EQ++RAR  +L   +G  +  I+   + +  G + F+G
Sbjct: 415 LEMAKEQG-VDVDEARFRELMLEQKTRARQDALAKKAGHVDSRIYHEFQNQLGGGSYFLG 473

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y                             SI+  IV +G  V        +EV+ D+TP
Sbjct: 474 YTESE-----------------------TESIISGIVSEGAAVPALTGPADIEVILDKTP 510

Query: 520 FYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           F+AE GGQL D G     G   ++I DVQ   +G+ VH   +  G L    + V  I   
Sbjct: 511 FWAEMGGQLADHGTIRTTGGAIVEIDDVQAPIKGLTVHRGRLVEGTLALGETAVAKICTD 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R  ++  H+ATH++H  L   +G   +Q GS  +P  LRFD  H+  +    L  +E  
Sbjct: 571 RRLAIARAHTATHMVHKGLHEFIGEGATQAGSENSPSRLRFDFRHTSAVPVDVLGELEAR 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  +A NL V   IMN +DA A GA AL G KY + VRVV++        S  LC GTH
Sbjct: 631 VNQQLANNLTVTDTIMNIDDAKAMGAMALFGEKYGNEVRVVNIGD----GWSVELCAGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG I  + ++ E+SI +G+RRI+A+ G  A +H   +   +  L   +      + G
Sbjct: 687 VPTTGHIGRVALLGEASIGSGVRRIDALVGDGAYAHQAKEHALVSQLTGLIGGKSDELPG 746

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELKSV 812
           +VE + ++ +  +   AK      +   +       ++   + +   +     ++ L+S+
Sbjct: 747 KVESLLKKLKDAEKQIAKLGEAQMLARAAELATQVERLGAFDAVIVNLGEAASAEGLRSL 806

Query: 813 MDALQKKIQSG--IIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGG 869
           +  ++ ++     +++        K  V++   E        A  L RL+++ L GG GG
Sbjct: 807 VLDVRARLGEANPVVVAGIGVISDKPQVVVATNEAARGAGAKAGALVRLASQTLQGG-GG 865

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GR  +AQ GG N     +A+  V   L+
Sbjct: 866 GRDDVAQGGGQNPAAVPEAVEVVKQALR 893


>gi|317180966|dbj|BAJ58752.1| alanyl-tRNA synthetase [Helicobacter pylori F32]
          Length = 847

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/891 (36%), Positives = 481/891 (53%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLHFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+  FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVVFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFETCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFAGYETTECCAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LG 
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGP 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++LP     M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNVQIFKHLPSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVMAGINKLKESVKNSQK-------APIS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG +  K   A++   +
Sbjct: 793 NAP---IKANAWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALSLAKN 839


>gi|317178465|dbj|BAJ56253.1| alanyl-tRNA synthetase [Helicobacter pylori F30]
          Length = 847

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/891 (36%), Positives = 482/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNVYAPNEFAGYETTECCAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + EA   Q+  V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 467 --------------DFKEITEANPNQEAWVLLEETPFYAEGGGAIGDRGALLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----VSIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVMAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKNKHERLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG +  K   A++   +
Sbjct: 793 NAP---IKANAWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALSLAKN 839


>gi|297852712|ref|XP_002894237.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata]
 gi|297340079|gb|EFH70496.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata]
          Length = 955

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/956 (31%), Positives = 454/956 (47%), Gaps = 89/956 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P          
Sbjct: 16  VRDTYVDFFKGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLTRA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L 
Sbjct: 76  CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 135

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y T +  DE        EA  +W +   L + +++     DNFW M +TGPCGPC+
Sbjct: 136 TDRIYATYFGGDEKAGLQPDNEARDIWLQF--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 193

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG ER+
Sbjct: 194 EIHYDRVGNRD-AAYLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 252

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSF 284
            +VLQ K +NYD D+F  +    ++ T         G + +    + +RV+ DH+R+ SF
Sbjct: 253 TSVLQNKMSNYDTDVFMPIFDDIQKATGARAYSGKVGPEDDDRVDMAYRVVADHIRTLSF 312

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL + 
Sbjct: 313 AIADGSRPGNEGREYVLRRILRRAVRYGKQILKAEEGFFNGLVSSVIRVMGDVFTELKEH 372

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  I E ++ E+  F KTL +G+           +   L+G+ AF L+DT+G PLD+ Q 
Sbjct: 373 EKKITEIIKEEEASFCKTLVKGIEKFQKA-EQAVQGNTLSGEDAFVLWDTYGFPLDLTQL 431

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   R    +D+  FN+A+EE R R+R+       G                     D  
Sbjct: 432 MAEER-RLLVDVEGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 473

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S   K                   S +KAI      +E   +   V +V   T FYAE
Sbjct: 474 ATSTLHKTGVSATDDSFKYIWFQDHESELKAIYTGSTFLESLAATDNVGLVLGSTSFYAE 533

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH-HAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQ+ DTG   G      + +VQ     +    +   + G +     ++  +DY+ R+ 
Sbjct: 534 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVVHIGYLSKDAGEVSVGDKVICKVDYERRKL 593

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+ TH+L+ AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  VN  
Sbjct: 594 IAPNHTCTHMLNFALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 653

Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690
           I   L V ++     +A    G  A+ G  Y D VRVVS+              +  + S
Sbjct: 654 IKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRQVEDLLADPENNEWSLLS 713

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746
           S  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L       + +     
Sbjct: 714 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 773

Query: 747 ----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784
                     S LK              ++  ++  +  E RK Q   A++ L+ +V+  
Sbjct: 774 AEGSALEKKVSALKSRVDAAIIPAAKKADIRAKIASLQNEVRKAQKKIAEQNLKKSVKVA 833

Query: 785 --DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                        F    +   +D+  ++  +  + +K    I++        KA V   
Sbjct: 834 TEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAVVCAG 893

Query: 842 VTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           V E  D     +  +    +   L G  G G+  +A   G + ++   A+   ASF
Sbjct: 894 VPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMAASF 949


>gi|1673365|emb|CAA80380.1| mitochondrial tRNA-Ala synthetase [Arabidopsis thaliana]
          Length = 1003

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/956 (31%), Positives = 459/956 (48%), Gaps = 89/956 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P          
Sbjct: 64  VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 123

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L 
Sbjct: 124 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 183

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCGPC+
Sbjct: 184 TDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 241

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG ER+
Sbjct: 242 EIHYDRIGNRD-AASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 300

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+ SF
Sbjct: 301 TSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSF 360

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL + 
Sbjct: 361 AIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEH 420

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  I + ++ E+  F KTL +G+           +   L+GD AF L+DT+G PLD+ Q 
Sbjct: 421 EKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDLTQL 479

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   RGL  +D+  FN+A+EE R R+R+       G                     D  
Sbjct: 480 MAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 521

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S   K                   S +KAI      +E + +   V +V   T FYAE
Sbjct: 522 ATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAE 581

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQ+ DTG   G      + +VQ      + + +   E G +     ++  +DY+ R+ 
Sbjct: 582 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKL 641

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  VN  
Sbjct: 642 IAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 701

Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690
           I   L V ++     +A    G  A+ G  Y D VRVVS+              +  + S
Sbjct: 702 IKDELDVFSKEAVLSEAKRIKGLRAVFGEAYPDPVRVVSIGRKVEDLLADPENNEWSLLS 761

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746
           S  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L       + +     
Sbjct: 762 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 821

Query: 747 ----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784
                     S LK              ++  ++  +  E RK Q   A++ L+ +V+  
Sbjct: 822 AEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLA 881

Query: 785 --DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                        F    +   +D+  ++  +  + +K    I++        KA V   
Sbjct: 882 TEAAESAASDGKTFCIIQLDVGLDAAAVQEAVSKVMEKKGMSIMVFSTDESTNKAVVCAG 941

Query: 842 VTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           V E  D     +  +    +   L G  G G+  +A   G + ++   A+   +SF
Sbjct: 942 VPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSF 997


>gi|317177983|dbj|BAJ55772.1| alanyl-tRNA synthetase [Helicobacter pylori F16]
          Length = 847

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/891 (36%), Positives = 481/891 (53%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCG CSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGSCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L + K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKEFKEMVLKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-VRVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTECSAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGVLLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----TSIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        + ++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKIALKNN--DVMAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG +  K   A+    +
Sbjct: 793 NAP---IKANAWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALNLAKN 839


>gi|115481322|ref|NP_001064254.1| Os10g0182000 [Oryza sativa Japonica Group]
 gi|110288715|gb|ABG65948.1| Alanyl-tRNA synthetase, mitochondrial precursor, putative,
           expressed [Oryza sativa Japonica Group]
 gi|113638863|dbj|BAF26168.1| Os10g0182000 [Oryza sativa Japonica Group]
 gi|215694746|dbj|BAG89937.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 999

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/963 (31%), Positives = 457/963 (47%), Gaps = 95/963 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            S +R TF+ FF+   H   PSS ++P +DPTL+F N+GM  FK +F G   P       
Sbjct: 55  ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 114

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ +
Sbjct: 115 RRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQVY 174

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        E+  +W K   L  +K++     DNFW M +TGPCG
Sbjct: 175 KLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPCG 232

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI FD+           + +    IEIWNLVF+QF ++       LP   +DTGMG 
Sbjct: 233 PCTEIHFDRVGNRD-AASLVNNDDPTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGMGF 291

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----------KYEGNNIVNHRVIVDHL 279
           ER+ ++LQ K +NYD D+F  +  A  Q+ G            +      + +RV+ DH+
Sbjct: 292 ERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVADHI 351

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ SF IADG  P NEGR YVLRRI+RRA+ +    L   +     L+      MG  +P
Sbjct: 352 RTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDVFP 411

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396
           EL   +  I++ ++ E+E F  TL +G          + +    +L+G  AF L+DT+G 
Sbjct: 412 ELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVKESGGTVLSGQDAFVLWDTYGY 471

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL+ +D   F+ A+EE R +AR      G         S+     AT 
Sbjct: 472 PVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDANAT- 522

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                       ++          P        S+VKAI    E V  A   +   +V +
Sbjct: 523 ----------AQLRNQGLASTDDSPKYGYKDNDSVVKAIYTGSEYVSAASGDEDFGLVLE 572

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL--RTEMSLVLT 574
            T FYAE GGQ+ DTG   G      +T+VQ  A    +H     +G         +   
Sbjct: 573 STSFYAEQGGQIYDTGKIEGSFGSFNVTNVQVFAGY-VLHMGSFTKGSKALSVGDKVACK 631

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +DY  R  ++ NH+ TH+L+ AL  ILG HV Q GS + P+ LRFD +H KP+   +L+ 
Sbjct: 632 VDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLRK 691

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           IE  VN  I   L V  R +   DA   +G  A+ G  Y D VRVVSV            
Sbjct: 692 IESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLANPE 751

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ---- 738
            ++    S+ LCGGTH+ +T E     ++SE  I  G+RRI A+T + A   +       
Sbjct: 752 SKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHASDAIKDASSID 811

Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQL----IH 774
                         ++ + S+ S L         + ++ GRV ++ +E RK +      +
Sbjct: 812 SEINEASKLEGAILEKTIASIKSKLDTALIPAARKADLKGRVSKLEDELRKAKKKMGEEN 871

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK- 832
            ++ ++  ++           F    +   +D+  ++  +  ++ + +   IML    + 
Sbjct: 872 IQKAVKFAIDAAQTALSEGKRFCVAHVDVGLDTSAIREAVIKVKDQ-KDLPIMLFSTDEA 930

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             KA +   V     +    +D    S   L G GGGG+  +AQ  G   ++  +A+   
Sbjct: 931 TNKAVIYAGVPPSAANSLKVLDWLTPSIAPLKGKGGGGKNGIAQGQGTEASQLKEAMEVA 990

Query: 893 ASF 895
              
Sbjct: 991 TQI 993


>gi|71022301|ref|XP_761380.1| hypothetical protein UM05233.1 [Ustilago maydis 521]
 gi|46097613|gb|EAK82846.1| hypothetical protein UM05233.1 [Ustilago maydis 521]
          Length = 990

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/978 (32%), Positives = 467/978 (47%), Gaps = 110/978 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            + +R TF  +FQ+  H  +PSSS IP +DPTL+F N+GM  +K IF G   P       
Sbjct: 24  ATKVRDTFTGYFQERKHTFVPSSSTIPYDDPTLLFANAGMNQYKPIFLGIADPNSSFGSM 83

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI++AW+LLTK +
Sbjct: 84  KRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEMAWELLTKVY 143

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T ++         D EA  LW K  G+  D I+     DNFW M  TGPCG
Sbjct: 144 GLPKDRLYVTYFEGDAKQGLEPDLEARDLWLK-VGVDEDHILTGDAKDNFWEMGATGPCG 202

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           +++    IEIWN VFMQF +++      LP   IDTGMG 
Sbjct: 203 PCSEIHYDRI-GGRNAADLVNKDDPNVIEIWNNVFMQFNREDDGSLRPLPAKHIDTGMGF 261

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLRS 281
           ER+ ++LQ+K +NYD D+F  +    +Q+TG +          +      +RV+ DH+R+
Sbjct: 262 ERLVSILQDKPSNYDTDVFTPIFNKIQQLTGARAYTGKLGAEDKDGIDTAYRVVADHVRT 321

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P  +GRGYVLRRI+RR   Y R             L+P L  +MG  +PE
Sbjct: 322 LTFAISDGGVPDRDGRGYVLRRILRRGTRYVRKYFQVPIGSFFSQLVPTLVEQMGHFFPE 381

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397
           + +    ++  L  E+  F +TLDRG  L +   +      ++ L+G+  +KLYDT G P
Sbjct: 382 ITKKVDDVKAILDEEEASFARTLDRGERLFEEYAAKAKAAGNKQLSGNDVWKLYDTFGFP 441

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   +   +GL G++   F  A  E +  ++A                     G T+ 
Sbjct: 442 VDLTLIMAEEQGL-GVNEKEFEAAQAESKEISKAGGKK-----------------GETEA 483

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQ---KVEV 513
           + +D+       K+      Q       N V + VKAI Q    V+     G       +
Sbjct: 484 VKFDVHDLGHLEKDSSVPKTQDDFKYGVNTVKASVKAIYQDHAFVDNTSKIGDRAKNFGI 543

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T  YAE+GGQ  DTG  + DG    + +  +   G  +H   ++ G L     +V+
Sbjct: 544 LLDRTCLYAESGGQQADTGSIVIDGKTEFVVEDAQVFSGYVLHIGHLKHGELGLNDEVVV 603

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           + D   R  L  NH+ATH+L+  L  +LG H+ Q GS + P  LRFD +H + +   ELK
Sbjct: 604 SYDQSRRGPLQSNHTATHILNFGLREVLGDHIDQKGSLVAPTKLRFDFSHKQGVNVQELK 663

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVS-----------V 681
            IED   D I +++ V ++ M  + A    G  A+ G  Y + VRVV+           +
Sbjct: 664 KIEDISIDWIKRDVGVYSKEMPLDTAQKIPGLRAVFGEAYPNPVRVVTLEYDLDTIADDI 723

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---------- 731
           E       S   CGGTHV+ TGEI    I  ES I  GIRRI A+TG  A          
Sbjct: 724 ENTKWRGTSVEFCGGTHVAKTGEIGEFVITEESGIAKGIRRIIAVTGNEAAAVTKVADDA 783

Query: 732 ------RSHLMGQ---DEKLKSLASFL---------KVSQGNVVGRVEEIWEEYRKLQLI 773
                    +  Q   D  LK+  + L         K S       + +  +   K +  
Sbjct: 784 EVRLAEIDAIQEQSAKDAALKAFGTQLAQLDMSVVRKASLNETFAAIRKKLDSGLKAKDK 843

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ-----------S 822
              + +   VE+    K     F+       + K L+S ++ ++K  +           +
Sbjct: 844 ADTKLVVSAVEEHFKTKPNSTCFIHKFDVGSNMKALQSALNTVKKMDKTAYLFSQELDVN 903

Query: 823 GIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS---- 877
           G+ +  G + + K   +  V++ D     NA +    SA+ + GG GGG+   AQ     
Sbjct: 904 GVKVADGNAIKAKVVHVAYVSKHDQAKGLNAKEWIETSAQHV-GGKGGGKTDSAQGIGEM 962

Query: 878 GGPNGNKADQAIAGVASF 895
           GG      + A+     F
Sbjct: 963 GGQ---ALEDAVEAAKRF 977


>gi|291390471|ref|XP_002711725.1| PREDICTED: alanyl-tRNA synthetase [Oryctolagus cuniculus]
          Length = 945

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/961 (32%), Positives = 467/961 (48%), Gaps = 95/961 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS  IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSGTIPLDDPTLLFANAGMNQFKPIFLNTIDPTHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F +   RLY+T                 L   KI+     DNFW M +TGPCGPCSEI +
Sbjct: 126 FGIPIERLYVTY----------------LDDTKILPGNMKDNFWEMGDTGPCGPCSEIHY 169

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMGLER+ +VL
Sbjct: 170 DRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTGMGLERLVSVL 228

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIAD 288
           Q K +NYD DLF    +A ++ TG +               + +RV+ DH R+ +  +AD
Sbjct: 229 QNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDVDGIDMAYRVLADHARTITVALAD 288

Query: 289 GILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL +   ++
Sbjct: 289 GGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMV 348

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           ++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+   I   
Sbjct: 349 KDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDLTGLIAEE 408

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G +    S 
Sbjct: 409 KGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRAKGLEATDDSP 462

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                           +     + V A+ ++   VEE  +GQ+  VV D+T FYAE GGQ
Sbjct: 463 K----YNYQADSSGSYVFESTVATVLALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQ 518

Query: 528 LGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           + D G  +        + + T    +  G +V H     G LR    + L ID   RR +
Sbjct: 519 IYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTVYGSLRVGDQVRLFIDEPRRRPV 578

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  E+  N++I
Sbjct: 579 MSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAEEIANEMI 637

Query: 644 AQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSS 691
           A   PV T+           G  A+    Y D VRVVS+               G + S 
Sbjct: 638 AAAKPVYTQDCALAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLEDPSGPAGSLTSV 697

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---SF 748
             CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   KSL+   + 
Sbjct: 698 EFCGGTHLRNSSHAGDFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKKSLSVMEAK 757

Query: 749 LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCHKIADVN-- 795
           +K       +V   + ++ E        +++K +L    + L+  ++DL     ADV   
Sbjct: 758 VKAQTAPNKDVQKEIADLGEALAAAVIPQWQKDELRETLKSLKKIMDDLDRASKADVQKR 817

Query: 796 -----------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKAS 837
                             +  + S   +K L   +   +        ML  +  E  K +
Sbjct: 818 VLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVDNEAGKIT 877

Query: 838 VLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A+    SF 
Sbjct: 878 CLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEALQLATSFA 936

Query: 897 K 897
           +
Sbjct: 937 Q 937


>gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala synthetase [Arabidopsis thaliana]
 gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis thaliana]
 gi|31711780|gb|AAP68246.1| At1g50200 [Arabidopsis thaliana]
          Length = 955

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/956 (31%), Positives = 459/956 (48%), Gaps = 89/956 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P          
Sbjct: 16  VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L 
Sbjct: 76  CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 135

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCGPC+
Sbjct: 136 TDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 193

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG ER+
Sbjct: 194 EIHYDRIGNRD-AASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 252

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+ SF
Sbjct: 253 TSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSF 312

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL + 
Sbjct: 313 AIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEH 372

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  I + ++ E+  F KTL +G+           +   L+GD AF L+DT+G PLD+ Q 
Sbjct: 373 EKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDLTQL 431

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   RGL  +D+  FN+A+EE R R+R+       G                     D  
Sbjct: 432 MAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 473

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S   K                   S +KAI      +E + +   V +V   T FYAE
Sbjct: 474 ATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAE 533

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQ+ DTG   G      + +VQ      + + +   E G +     ++  +DY+ R+ 
Sbjct: 534 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKL 593

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  VN  
Sbjct: 594 IAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 653

Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690
           I   L V ++     +A    G  A+ G  Y D VRVVS+              +  + S
Sbjct: 654 IKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLS 713

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746
           S  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L       + +     
Sbjct: 714 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 773

Query: 747 ----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784
                     S LK              ++  ++  +  E RK Q   A++ L+ +V+  
Sbjct: 774 AEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLA 833

Query: 785 --DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                        F    +   +D+  ++  +  + +K    I++        KA V   
Sbjct: 834 TEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAVVCAG 893

Query: 842 VTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           V E  D     +  +    +   L G  G G+  +A   G + ++   A+   +SF
Sbjct: 894 VPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSF 949


>gi|320040301|gb|EFW22234.1| alanyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 964

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/966 (30%), Positives = 465/966 (48%), Gaps = 96/966 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60
            +R TFL+FF+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       + 
Sbjct: 19  KVRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKR 78

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L
Sbjct: 79  AHNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGL 138

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY+T ++         D E   LW    G+  D I+     DNFW M + GPCGPC
Sbjct: 139 EPDRLYVTYFEGNKDAGIEPDLETKDLWLS-VGVKEDHILSGNMKDNFWEMGDQGPCGPC 197

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SE+ +D+           + +    +EIWN VF+Q+ ++++     LP   +DTGMG ER
Sbjct: 198 SEVHYDRI-GGRNAAHLVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGYER 256

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283
           + +VLQ+K +NYD D+F  L  A  ++TG++                 +RV+ DH+R+ +
Sbjct: 257 LVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDLDGIDTAYRVVADHVRTLT 316

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341
           F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ 
Sbjct: 317 FAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPEIK 376

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLD 399
           + +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D
Sbjct: 377 KKQTDVMEILDEEEISFAKTLDRGERQFEIYAQQAKDSGSNKLHGADVWRLYDTFGFPVD 436

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + Q +   RGL+  ++          R +A+  S G     ++ +  S+ +         
Sbjct: 437 LTQLMAEERGLSIDNVEFEEA-----RLKAKEASKGQAKAASDLLKLSVHDL-------- 483

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516
                    +++D+              + S + A+    E V+       G ++ ++ D
Sbjct: 484 -------SKLEKDKVPKTNDDAKFGRGNILSQIVAVYHDKEFVDSTSGIPEGDQIGIILD 536

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +T FYAE GGQ  DTG  I DG         +   G   H   ++ G L    S++   D
Sbjct: 537 KTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMYGGYVFHTGFIKYGNLSVGDSVISEYD 596

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L+ AL  +LG+ + Q GS +  + LRFD +H   ++ ++L+ IE
Sbjct: 597 ELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDLEKIE 656

Query: 637 DNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684
           +   + I QN  V ++ +        +G  A+ G  Y D VRVVSV              
Sbjct: 657 EKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVKDP 716

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------- 736
                S   CGGTHV  TG+I  L I+ E  I  GIRRI A+TG+ A             
Sbjct: 717 RWKGVSIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDAHEVQRIAKEFGDR 776

Query: 737 -----------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIHA 775
                       ++++ K + + L     + V +           +++ E  + LQ    
Sbjct: 777 LNRFEKMEIGPKKEQEAKLIQADLNQLSISAVEKARFREQFARIHKQVLEAQKALQKQEI 836

Query: 776 KRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           K  L          +  D +  +  + +  ++K +   ++  + K++   I +     E 
Sbjct: 837 KAALDAINSHFEKPENKDSSHLIVRLPTSANAKAISESINHAKSKLKDKSIYVFAADAEQ 896

Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            + +    V+  L     +A + + + + ++ GG  GG+   +   G   ++ D+AI   
Sbjct: 897 GRVAHGCYVSSSLSAQGASASNWSGVVSGIV-GGKAGGKAPTSIGNGTEVDRVDEAIEAA 955

Query: 893 ASFLKK 898
             +L++
Sbjct: 956 TKYLEQ 961


>gi|308062521|gb|ADO04409.1| alanyl-tRNA synthetase [Helicobacter pylori Cuz20]
          Length = 847

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/891 (36%), Positives = 481/891 (53%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTECSAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + +A   Q+V V+ ++TPFYAE GG +GD G    D     +
Sbjct: 467 --------------DFKEITDANPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNEEAAM 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LG 
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGP 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED +N  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDKELEKVEDLINAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQKTPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 738 -DLPVEKIHGVDLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG +  K   A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALNLAKN 839


>gi|269977319|ref|ZP_06184292.1| alanyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|269934622|gb|EEZ91183.1| alanyl-tRNA synthetase [Mobiluncus mulieris 28-1]
          Length = 894

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/926 (34%), Positives = 493/926 (53%), Gaps = 64/926 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F  NGHE+ PS SLI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEIRQRWLDYFAANGHEVRPSVSLISP-DPSILFTIAGMVPFIPYIVGTETAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  ++++T+++ED+EA+++W K  GL    I ++   + FW   + GP G C+EI 
Sbjct: 116 KYGLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFI----LPKMSIDTGMGL 230
           +D+G    P G P    +G+R++E+WNLVF +F + + K + +     L + +IDTG+GL
Sbjct: 176 YDRGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ+K N Y+ID    +IQ +++++G KY  +     V+ RV+ DH+RS+  LI 
Sbjct: 236 ERLAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRR+MRRA+   RLLG  E +M  LLPA    M  +YPEL      I
Sbjct: 296 DGVRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            +   +E++ F +TLD G V+LD  V         L+G+ AF+L+DT+G PL +  +I  
Sbjct: 356 SDVAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEIAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462
              +  +D   F + + EQ+ RARA ++   +G  +  ++  L EK G T   +F+GY  
Sbjct: 416 EAKVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGYTE 474

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  I+Q G+ V  A +   +EV+ D+TPFYA
Sbjct: 475 TSAP-----------------------AKVIGILQDGKPVPAASAPATIEVLLDRTPFYA 511

Query: 523 EAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G   +  G    + DVQ   +G+ +H   +  G +        TID + R 
Sbjct: 512 EAGGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRG 571

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  H++TH++H  L   LG   +Q GS   P  +RFD  +SKP+++  L+ +E   N+
Sbjct: 572 AIARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANE 631

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  NL V+   M  E+A  +GA A+ G KY   VR+V +        S   CGGTHV  
Sbjct: 632 RLRANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSKEFCGGTHVPL 687

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I  L ++SE S+ +G+RRIEA+ G  A  +   +   +  +   +     ++V R+ 
Sbjct: 688 TGAIGSLMVLSEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERIT 747

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + E  +  +    K +L   + +L     S   I    F+   +S     +L+     L
Sbjct: 748 SMMERLKAAEKELEKTRLAALLSNLDNYVASAQNICGTKFICQSVSAGSVDDLRQAATQL 807

Query: 817 Q---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
           +    K +S ++ L    KE K  +++   E   ++   A  L +  A  + GGG GG+ 
Sbjct: 808 RGRFSKTESVVVALGAKIKE-KPMMVVATNEAAREKGVKAGALVKAGAAAMQGGG-GGKD 865

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            +AQ GG  G   +  +    + L++
Sbjct: 866 DLAQGGGAPGGSLENGLKAATTELQQ 891


>gi|50954761|ref|YP_062049.1| alanyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|59798521|sp|Q6AFA1|SYA_LEIXX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50951243|gb|AAT88944.1| alanyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 885

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/904 (34%), Positives = 476/904 (52%), Gaps = 59/904 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L+FF + GH ++PS+SL+  +DP+L+FT +GMVPF    TG     +   
Sbjct: 1   MQTAEIHRRWLDFFARRGHTVVPSASLV-SDDPSLLFTVAGMVPFVPYLTGIVPAPFPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
           T+VQKC+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  AWDLLT      
Sbjct: 60  TSVQKCIRTL----DIEEVGKTPRHGTFFQMCGNFSFGDYFKEQAIAFAWDLLTTAETEG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D + L++TVY+ED+EA ++W+++SGL+ ++I  +  + N+WS  + GP GPCSEIF
Sbjct: 116 GLGFDPKDLWVTVYEEDDEAREIWRRVSGLAEERIQGLGKDTNYWSTGQPGPAGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           FD+G    G   G + + +RY+EIWNLVFMQF +       + +    LPK +IDTG+GL
Sbjct: 176 FDRGPAY-GIDGGPATDDDRYVEIWNLVFMQFLRGEGTGKDDFEILGDLPKKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A + Q   N Y+ID  + ++  + ++ G  Y      + V  RV+ DH+RS+  L+ 
Sbjct: 235 ERVAFLKQGVENMYEIDQVRPVLDRAAELAGKPYGNEAHEDDVRLRVVADHVRSALMLMT 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRR++RR +    LLG        L P     M +AYPE+       
Sbjct: 295 DGVTPSNEGRGYVLRRLLRRTVRAMWLLGVEAATFPALFPVSRDAMKAAYPEVETEFART 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
            +   +E+E F +TL  G  +LD  +++  K     L GD AF L+DT+G P+D+  ++ 
Sbjct: 355 SQLAYAEEETFLRTLVAGTSILDTAVANTQKAGKRELAGDTAFLLHDTYGFPIDLTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL+ +D  +F+  + +QR+RA+A +    +   +   +S     G T F GY  L  
Sbjct: 415 EEAGLS-VDRAAFDTLMADQRARAKADAKAKKTALADLSVYSGLRALGETVFTGYTELE- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  ++  G    +AV GQ  EV+   T  YAEAG
Sbjct: 473 ----------------------TESSVLGLIIDGHSANKAVEGQVAEVILGATALYAEAG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  DTG  +G G  L + DVQK   G+  H  +V  G +   +     +D   RR    
Sbjct: 511 GQDADTGTIVGPGYVLDVLDVQKPVRGLVSHRVLVRSGEVGVGVPATSLVDADYRRGAKQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LGS+  Q+GS      LR D + ++ ++      IE+  N  I Q
Sbjct: 571 AHSGTHIIHAALRQVLGSNAHQSGSYNKAGYLRLDFSWNQALSPETRSEIEEISNSAIRQ 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NL V TR +   +A A GA AL G KY D VRVV +    GG  S  LC GTHV+ + EI
Sbjct: 631 NLEVTTRELPLAEAKALGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVARSAEI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ +VSESS+ +  RR+E++ G  A   L  +   +  L+S LK  +  +  ++ ++  
Sbjct: 687 GLINLVSESSVGSTNRRVESLVGLEAFKDLAVERTIVSQLSSSLKTPREQLPEKIADLMA 746

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVD-SKELKSVMDALQKK 819
             +  +      + +  ++ +     +  +   V  ++     +  + +L+ +   ++ +
Sbjct: 747 SLKAAEKRIQAFEARAVLDRVQGLLEAVSRRGAVQVVAADAGTLSTADDLRLLAITVRDR 806

Query: 820 IQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           + S    + L  ++  K   ++            A  LA+ +A VLGGGG GG+  +AQ 
Sbjct: 807 LGSDPATVALAALAGGKPVVIVATNQAARDAGVTAGALAKTAAGVLGGGG-GGKADLAQG 865

Query: 878 GGPN 881
           GG +
Sbjct: 866 GGTD 869


>gi|171915187|ref|ZP_02930657.1| alanyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 917

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/958 (32%), Positives = 455/958 (47%), Gaps = 106/958 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSL-IPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
              + IR +FL+FF++  H ++PS ++     D   +FTN+GM  F  IF G+       
Sbjct: 1   MTSAQIRQSFLDFFKEKQHTIVPSDNVGYTSRDGARIFTNAGMNQFVPIFLGERPADVDT 60

Query: 59  ----------QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQ 108
                           QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFG YFK+ AI 
Sbjct: 61  WPGVLHKGLPTRAADTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSFGDYFKKDAIS 120

Query: 109 LAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKI---SGLSAD-KIIRITT 156
            AW+L+ + +     R++ T+Y        + DEE++  W +     GL  +  I+    
Sbjct: 121 WAWELVIERWKFPPTRVFATIYQPGEGDPAERDEESWGYWAEKFRSVGLDPEIHIVNGNK 180

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPG--------GLPGSSEEGERYIEIWNLVFMQF 208
            DNFW MAETGPCGPC+EI  D               G    +      IEIWN VF+Q+
Sbjct: 181 KDNFWMMAETGPCGPCTEIHIDLTPGPRDLDEGRQREGAKLVNGSSADCIEIWNNVFIQY 240

Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQE----------KTNNYDIDLFKHLIQASEQ 258
                +    LP   +DTGMG ER+ +++Q           K +NYD D+FK +     +
Sbjct: 241 NANADKTFSKLPAQHVDTGMGFERVTSIIQGTRNFTDFENAKISNYDTDVFKPIFDEISK 300

Query: 259 VTGMKY--------------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           ++G  Y              +    V  RV+ DH+R+ SF IADGI P N  R Y LRRI
Sbjct: 301 MSGKTYASTLPASGSTGDTEQEKIDVAFRVLADHIRTLSFSIADGISPGNNDRNYTLRRI 360

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ Y R LG+ EP    L+  L   MG  +PEL   K  ++  L+ E+E F +TLDR
Sbjct: 361 LRRAVKYGRTLGFKEPFFYKLVDVLAQHMGEVFPELRARKEHVKSVLKMEEESFNRTLDR 420

Query: 365 GLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           G+ L +     L      + G+VAF+L DT G P+D+ Q +   RGL       + + L 
Sbjct: 421 GISLFESEADKLAGKGTEITGEVAFRLSDTFGFPIDLTQLLARERGLTVDVPE-YERLLA 479

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ+ R+   S G      + +  S  E    T+FIGYD L                    
Sbjct: 480 EQKKRSTEDSKGRK----QVVSLSEIETKEPTKFIGYDNLEAPA---------------- 519

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           +++E      K  VV D +PFYAE GGQ+GD+G  I       I
Sbjct: 520 ----------------KVLEVVSMKDKTAVVLDSSPFYAEMGGQVGDSGALIIGADSFPI 563

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           ++ QK        H +         +   L ++   RR +  +H+ TH++H AL  ++  
Sbjct: 564 SNTQKVGNT--WLHFLDGEDTPSVGVEAQLAVEPSRRRAIERHHTVTHIMHWALHEVVSK 621

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             +Q GS + PD L FD   S  +T+A+L  IE  VN+ I  N  V    +   +  ++ 
Sbjct: 622 EATQKGSFVGPDKLTFDFN-SAALTAAQLADIERLVNERIVANDVVSWDELPYAEVKSNP 680

Query: 664 AAAL-LGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                 G KY D+VRVV V  +      +S  LCGGTH  STGEI L  +VSES++ AG+
Sbjct: 681 GIMQLFGEKYGDKVRVVQVGGQAHALNGYSMELCGGTHTRSTGEIGLFRLVSESAVSAGV 740

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLA-SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           RR+EAI G  A        + LK LA   L     ++  ++E + ++ + L+      + 
Sbjct: 741 RRLEAIAGLEAYRAARSDADLLKLLAGKVLAQGTLDLEKKIETLLDQQKALEKALKSAQQ 800

Query: 780 QLNVEDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +           +A  + +   + EVD     +V DAL+  + SGI+++ G +     S+
Sbjct: 801 REAAARAKALLGLASNDAIIANLGEVDGDYAMAVSDALKS-LFSGIVVVAGTA-GGNVSL 858

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +  V++D   +  A  + +  A ++ GG GGG+P  A+ GG    K D A+      +
Sbjct: 859 IATVSKDHQAKLQAGKIIQAIAPIV-GGKGGGKPDFARGGGKEVAKVDAALDEARKLV 915


>gi|50545890|ref|XP_500483.1| YALI0B04180p [Yarrowia lipolytica]
 gi|49646349|emb|CAG82710.1| YALI0B04180p [Yarrowia lipolytica]
          Length = 960

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/966 (30%), Positives = 464/966 (48%), Gaps = 89/966 (9%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
            + +R TFL++F +K  H  +PSSS+IP +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  ATKVRKTFLDYFGEKRAHSFVPSSSVIPYDDPTLLFANAGMNQYKPIFLGTCDPSSPLSK 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VGR + HHTFFEMLGN+SFG YFK  A   AW+LLT+ 
Sbjct: 70  LNRAANSQKCIRAGGKHNDLDDVGRDSYHHTFFEMLGNWSFGDYFKAEACAWAWELLTQV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY++ +  D+        EA ++W  + G++ D I+   + DNFW M + GPC
Sbjct: 130 YGLDADRLYVSYFGGDDKLGLQPDLEAKQIWMDL-GVAEDHILPGDSADNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWN+VF+Q+ ++  +    LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGGGRNARDLVNMDDPNVLEIWNIVFIQYNREADKSLKPLPAKHIDTGMG 248

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F  +    +++TG +                 +RV+ DH+R
Sbjct: 249 FERLVSVLQDKSSNYDTDVFTPIFAKIQELTGARDYAGKFGAEDADGIDTAYRVVADHVR 308

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YTEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P N+GRGYVLRRI+RR   + R             L P L  ++   +P
Sbjct: 309 TLTFALADGGVPNNDGRGYVLRRILRRGARFVRKKFDVPIGSFFSQLAPTLIEQVNEIFP 368

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           EL +    I E L  E++ F +TLDRG  L +     +      +L G   ++LYDT+G 
Sbjct: 369 ELSKRTEDIFEILNDEEQSFSRTLDRGEKLFEQYAADAKANSKTVLAGKDVWRLYDTYGF 428

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID  +F++A +E    ++      G     K+      +     
Sbjct: 429 PVDLTRIMAEEAGL-DIDEAAFDKAKQESLEASKGGKKTAGGVQLVKLDVHALAELEKND 487

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVF 515
            +                    +     +N   + V AI      V+       +V ++ 
Sbjct: 488 AV---------------PKTDDQAKFTESNLSDAKVVAIYNGTGFVDSVDESAGQVGLLL 532

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T  YAE+GGQ  DTG  + DG      +  +   G  +H      G L+    + +  
Sbjct: 533 DKTCMYAESGGQEYDTGKIVIDGQTEFDVNNVQVYAGYVLHTGNFNYGSLKIGDVVNVGF 592

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  L  NH+ TH+L++AL   LG  + Q GS +  + LRFD +H   +T AE+  +
Sbjct: 593 DTARRTPLKNNHTGTHVLNYALKETLGDTIDQKGSLVASEKLRFDFSHKAGLTPAEVAKV 652

Query: 636 EDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVR-----------VVSVEY 683
           ED  N  I +NL V  + +        +G  A+ G  Y D VR           + + + 
Sbjct: 653 EDISNAYITKNLAVYAKSVDLTTAKKINGVRAVFGETYPDPVRVVSVGVPVEDLIANPDD 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---RSHLMGQDE 740
                +S   CGGTHV  TGEI  L I+ ES I  GIRRI A+TG+ A   +      DE
Sbjct: 713 AKWAEYSVEFCGGTHVGKTGEIKHLVIIEESGIAKGIRRIVAVTGKEAADVQKLAAEFDE 772

Query: 741 KLKSLASF-LKVSQGNVVGRVE--------------EIWEEYRKLQL-----IHAKRKLQ 780
           +L  LA+  L   +      +                + E++ K+Q      I AK K +
Sbjct: 773 RLDKLAAQPLGADKEQAAKAIGVELKKLSVSTTSKLALQEKFNKIQKTITDGIKAKLKAE 832

Query: 781 LNVEDLSC----HKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLV-GISKE 833
                        K  +  ++   + ++  +SK L   ++ ++ K+    + L  G   E
Sbjct: 833 SKASTDLVSSYFEKNPEATYLVAHVPDISANSKALSETINHVKSKLPGKSVYLFAGSPAE 892

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +    + E + ++   A  +  ++A ++GG  GG  P + Q  G N +K   A++ +
Sbjct: 893 GKVAHACFIDESVSNKGLTAQQMGAIAAGLVGGRSGGKGPTI-QGSGDNADKIADAVSEL 951

Query: 893 ASFLKK 898
              + K
Sbjct: 952 EKEITK 957


>gi|421855|pir||S32671 alanine-tRNA ligase (EC 6.1.1.7) - Arabidopsis thaliana  (fragment)
          Length = 989

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/956 (31%), Positives = 459/956 (48%), Gaps = 89/956 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P          
Sbjct: 50  VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 109

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L 
Sbjct: 110 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 169

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCGPC+
Sbjct: 170 TDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 227

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG ER+
Sbjct: 228 EIHYDRIGNRD-AASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 286

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+ SF
Sbjct: 287 TSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSF 346

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL + 
Sbjct: 347 AIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEH 406

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  I + ++ E+  F KTL +G+           +   L+GD AF L+DT+G PLD+ Q 
Sbjct: 407 EKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDLTQL 465

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   RGL  +D+  FN+A+EE R R+R+       G                     D  
Sbjct: 466 MAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 507

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S   K                   S +KAI      +E + +   V +V   T FYAE
Sbjct: 508 ATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAE 567

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQ+ DTG   G      + +VQ      + + +   E G +     ++  +DY+ R+ 
Sbjct: 568 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKL 627

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  VN  
Sbjct: 628 IAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 687

Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690
           I   L V ++     +A    G  A+ G  Y D VRVVS+              +  + S
Sbjct: 688 IKDELDVFSKEAVLSEAKRIKGLRAVFGEAYPDPVRVVSIGRKVEDLLADPENNEWSLLS 747

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746
           S  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L       + +     
Sbjct: 748 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 807

Query: 747 ----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784
                     S LK              ++  ++  +  E RK Q   A++ L+ +V+  
Sbjct: 808 AEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLA 867

Query: 785 --DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                        F    +   +D+  ++  +  + +K    I++        KA V   
Sbjct: 868 TEAAESAASDGKTFCIIQLDVGLDAAAVQEAVSKVMEKKGMSIMVFSTDESTNKAVVCAG 927

Query: 842 VTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           V E  D     +  +    +   L G  G G+  +A   G + ++   A+   +SF
Sbjct: 928 VPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSF 983


>gi|320093740|ref|ZP_08025599.1| exopolyphosphatase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979325|gb|EFW10816.1| exopolyphosphatase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 918

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/932 (34%), Positives = 484/932 (51%), Gaps = 71/932 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF    HE+ PS  LI    P+++FT +GMVPF     G E   +   
Sbjct: 20  MRTSEIRSRWLEFFAARDHEIRPSVPLISPE-PSILFTVAGMVPFIPYILGTEPAPWPRA 78

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKCVR     ND+DNVG+T RH TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 79  ASVQKCVRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAIDFAWHLLTDPRDQG 134

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+++ED+ +F  W +  GL A++I R+   +  WS  + GP G C EI 
Sbjct: 135 GYGLDGDRLWMTIWEEDQVSFDYWTREIGLPAERIQRLPFAEISWSTGQPGPAGSCCEIH 194

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNK-QERFILPKM----SIDTGMGL 230
           +D+G    PGG P     G+R++EIWNLVF +F +       F L       +IDTG GL
Sbjct: 195 YDRGAQYGPGGGPVVDTGGDRFLEIWNLVFDEFVRGEGAGHDFELVGKLDRTAIDTGAGL 254

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279
           ER+A ++Q+K N Y+ID    +I A+E ++G  Y              + V  RV+ DH+
Sbjct: 255 ERLAFIMQDKPNMYEIDEVFPVIAAAEAMSGKTYGLGAAGPEAGEAYADDVRLRVVADHV 314

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RSS  LI DG+ P N+GRGYVLRR++RRA+   RLLG  +  M  LL A    M ++YPE
Sbjct: 315 RSSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVHDAAMPVLLTASKDAMRASYPE 374

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPL 398
           L      I E   +E++ F +TL  G  +LD  ++        + G  AF L+DT+G P+
Sbjct: 375 LEADWGTISEVAYAEEDAFRRTLSAGTTILDTAVAQARSAGSPIPGASAFSLHDTYGFPI 434

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--YGATQ 456
           D+  ++   +G+  +D   F   +EEQ+ RARA +    +G T+   F   EK   G ++
Sbjct: 435 DLTLEMAAEQGVK-VDEDGFRALMEEQKERARADARAKKTGHTDVRVFQEIEKRLGGGSE 493

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F+GY                         +G  + V A++  G     A +G  VEVV D
Sbjct: 494 FLGYTE-----------------------SGCDASVVALLVDGHDAPAAQAGADVEVVLD 530

Query: 517 QTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +TPFYAE GGQL D G    +G   +++ DVQ    G+FVH   V  G +         I
Sbjct: 531 RTPFYAEMGGQLADHGTIRAEGGAVIEVNDVQAPIRGLFVHRGTVVEGAVAVGERAFAQI 590

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R  ++  H+ATH+++  L  ++G   SQ GS  +P  LRFD  HS  + ++++  I
Sbjct: 591 DTRRRLAIARAHTATHMVYAGLRAVVGQDASQAGSENSPSRLRFDFRHSSALGASQVDDI 650

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN+ +A++LPV T +M  E+A ASGA AL G KY  RVRVV++           LCG
Sbjct: 651 EALVNEKLAEDLPVTTEVMGIEEARASGAIALFGEKYGSRVRVVTIGD----GFDKELCG 706

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV STG +  + ++ E SI +G+RRI+A+ G  A  +   +   +  LAS +     +
Sbjct: 707 GTHVPSTGHLGRVTVLGEGSIGSGVRRIDALVGDGAYEYQAKEHAIVSRLASLVGGRPED 766

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD-SKEL 809
           +  RVE +    ++ +    K ++   +   +        I  +  +   +  V  +  L
Sbjct: 767 LPERVEALLARLKESEKELEKSRIDQALSQAAGLAARAKTIGRLTGVVAAVGAVPSADAL 826

Query: 810 KSVMDALQKKIQS---GIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGG 865
           +++   ++ +I      ++ L G+    K S+++   +     +  A  L R     LGG
Sbjct: 827 RTLALDVRDRIGGSGAAVVALAGLV-GGKPSLVVATNDGARARKAKAGALVRAVGSFLGG 885

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GG GGR  +AQ GG       +A+  +   ++
Sbjct: 886 GG-GGRDDIAQGGGTKPEGVGRALEELRRQIE 916


>gi|213512300|ref|NP_001133550.1| Alanyl-tRNA synthetase, cytoplasmic [Salmo salar]
 gi|209154450|gb|ACI33457.1| Alanyl-tRNA synthetase, cytoplasmic [Salmo salar]
          Length = 967

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/973 (31%), Positives = 469/973 (48%), Gaps = 96/973 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF ++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFIRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A  +A +LLTKE
Sbjct: 66  LKRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACTMALELLTKE 125

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +          D E  ++W  + G+   +II  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHEEAGLDPDLECKQIWLDL-GMDEARIIPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI FD+           + +    +EIWNLVF+Q+ ++++ E   LPK SIDTGMG
Sbjct: 185 GPCSEIHFDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQYNRESETELKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    QA ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFIPYFQAIQKGTGARDYTGKVGAEDVDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG  +     L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQKGFFATLVDVVVESLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+E+F KTL RG  +LD  +  LG  + + GD A+ LYDT+G PLD
Sbjct: 364 LKKDPDMVKDIINEEEEQFLKTLSRGRKILDRKIQSLGDSKTIPGDTAWLLYDTYGFPLD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+  +D+ +F +    ++  A+  S G GSG  + I   +           
Sbjct: 424 LTALIAEERGMM-VDVAAFEE----EKKAAQVKSQGKGSGDEDHIMLDIYAI-------- 470

Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            + LR       D               +       V A+ ++   VEE  +GQ+  V+ 
Sbjct: 471 -EDLRNKGIAATDDTLKYSYSADDSGKYVFEQAVGTVLALRRERAFVEEVTTGQECGVLL 529

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF----VHHAIVERGILRTEMSL 571
           D+T FYAE GGQ  D G  + +   +                 V H     G L+    +
Sbjct: 530 DKTSFYAEQGGQSFDEGYMLREDDSVDDRMEFTVKNTQVRGGYVLHVGTVYGTLKVGDHV 589

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +L +D   RR +  NH+ATH+L+ AL  +LG    Q GS + PD LRFD T    +++ E
Sbjct: 590 ILHVDEARRRPIMSNHTATHILNFALREVLG-EADQRGSLVAPDRLRFDFTAKGALSTEE 648

Query: 632 LKSIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------- 682
           ++  E+    +I                    G  A+    Y D VRVVS+         
Sbjct: 649 VRRTEEIACTMIRDAKHVYAMDTPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVADLLA 708

Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                 G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  A+      D
Sbjct: 709 DPSSTAGSLTSIEFCGGTHLRNSGHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAHRKAD 768

Query: 740 EK---LKSLASFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVED 785
                L +L   +KV      +V   + ++ E        +++K ++  A + L+  ++D
Sbjct: 769 ALRQSLSALGEKVKVQTAPNKDVQKEIADMTEFLGMAVISQWQKDKMREALKGLKKTMDD 828

Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           L     ADV                     +  + S   +K L   +  L+ +      M
Sbjct: 829 LDRASKADVQKRVLEKTKEMIDSSPNQPLVVMEMESGASAKALNESLKLLKTQSPQTAAM 888

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L  +  +  K   L  V +D+ +R   A +  +     L  G GGG+   AQ+ G N + 
Sbjct: 889 LFTVDHDAGKIVCLCQVPQDVANRGLKASEWVQELCP-LMDGKGGGKDMSAQATGRNTHC 947

Query: 885 ADQAIAGVASFLK 897
            ++A+     F +
Sbjct: 948 IEEALQMANQFAQ 960


>gi|168042124|ref|XP_001773539.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675078|gb|EDQ61577.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 937

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/921 (33%), Positives = 441/921 (47%), Gaps = 91/921 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            + +R TF  FF+   H  +PSS ++P +DPTL+F N+GM  FK IF G   P       
Sbjct: 9   ANRVRETFNSFFESKNHTFVPSSPVVPVDDPTLLFANAGMNQFKPIFLGTVDPRSARGNL 68

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT  +
Sbjct: 69  KRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIAWAWELLTSVY 128

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY T +          D+EA  +W+ +  L    ++     DNFW M ++GPCG
Sbjct: 129 KLPKDRLYATYFGGDENLGLAADDEARDIWRGL--LPESHVLPFGCKDNFWEMGDSGPCG 186

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI FD+           + +    +EIWNLVF+QF ++      +LP   +DTG+G 
Sbjct: 187 PCSEIHFDRIGGRDASS-LVNMDDPNCLEIWNLVFIQFNREQDGSLKVLPAQHVDTGLGF 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRS 281
           ER+ +VLQEK +NYD DLF  +  A ++ T         G     N  + +RV+ DH+R+
Sbjct: 246 ERVTSVLQEKMSNYDTDLFTPIFGAIQKATGAREYSGKVGKDDTDNVDMAYRVVADHIRT 305

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRR++RRA+ Y R  L   E     L+  +   MG A+PEL
Sbjct: 306 LSFAIADGSRPGNEGREYVLRRMLRRAVRYGREVLKAQEGFFSGLVDIVVEVMGEAFPEL 365

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            + +  I+E +  E+  F +TL +G+       + +  D +L    AF L+DT G P+D+
Sbjct: 366 KKNQAKIKEIISEEESSFSRTLVKGIEKFKKAAAEVK-DGVLGAQDAFILWDTFGFPIDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +    GL  +D   FN+ +EE R +AR      G                       
Sbjct: 425 TELMAEEMGLK-VDKEGFNRTMEEAREKARGARGKAGGKALVM----------------- 466

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +    S+  K        KP        +  VKAI       EE+ S + V +V D T +
Sbjct: 467 EAEATSQLQKLGILPTDDKPKYIWHKNPTVTVKAIFTSSGF-EESTSDEDVGIVLDTTSY 525

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE GGQ+ DTG   G      + +VQ     +    +I   G +     +   +DY  R
Sbjct: 526 YAEQGGQIYDTGVLEGPNGAFTVREVQIYGGYVLHIGSINNGGKISVGDKVTSQVDYARR 585

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
             ++ NH+ THLL++AL  +LG H+ Q GS + PD LRFD +H KPI S +L  IE  V 
Sbjct: 586 AVVAPNHTCTHLLNYALKEVLGDHIDQKGSLVAPDKLRFDFSHGKPIDSKDLGEIEAIVA 645

Query: 641 DIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGV 688
             I   + V  +  +  +A    G  A+ G  Y D VRVV++              +   
Sbjct: 646 QQIRDGMTVYAKEASLAEAKRIMGLRAVFGEVYPDPVRVVAIGRPVEDLLADPENPNWAK 705

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD--------- 739
            S+  CGGTH+S+T E     +VSE  I  G+RR+ A+T   A+  +   +         
Sbjct: 706 LSTEFCGGTHLSNTKEAEAFALVSEEGIAKGVRRVTALTMGAAKEAIHQSEVFSSQIDKA 765

Query: 740 ------EKLKSLASFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAKRKLQLNV 783
                    K +AS LK S  NVV           R+ E+ E  RK Q   A   LQ  +
Sbjct: 766 SKLEGPALEKEVAS-LKNSLENVVIPAAKKAEFRTRLGELQERIRKAQKAAAGSNLQTAL 824

Query: 784 EDLSCHK----IADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KAS 837
                        +  F    I   +D+  ++  +  + +K +   +M+  + ++K K  
Sbjct: 825 NGAVSSADTAVAQNQPFCVLRIDVGLDTNAVREAVTLVMEKHKDLAVMIFSVDEQKNKVL 884

Query: 838 VLIVVTEDLLD-RFNAVDLAR 857
           V   V +         +D  R
Sbjct: 885 VYAGVPDSAAKQGLKVLDWLR 905


>gi|308064021|gb|ADO05908.1| alanyl-tRNA synthetase [Helicobacter pylori Sat464]
          Length = 847

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/891 (36%), Positives = 482/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLERKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTECCAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LG 
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGP 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED+VN  I ++L    + M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDSVNAQIFKHLNSQVQHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 737 MDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKNKHERLLAMVF-KKENERITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKG-GGRGDFASAGGRDIENLQAALNLAKN 839


>gi|326519084|dbj|BAJ96541.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1008

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/966 (30%), Positives = 458/966 (47%), Gaps = 96/966 (9%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
              + +R  F++FF+   H   PSS ++P +DPTL+F N+GM  FK +F G   P      
Sbjct: 60   TAARVREVFIDFFKSKSHTPWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTASPDSQLGR 119

Query: 59   -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ 
Sbjct: 120  LSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEGAIGYAWELLTQV 179

Query: 118  FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + L   R+Y T +  DE        E+  +W K   L  ++++     DNFW M +TGPC
Sbjct: 180  YKLPTDRIYATYFGGDEKAGLAPDTESKNIWLKY--LPNERVLPFGCKDNFWEMGDTGPC 237

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPC+EI FD+           + +    IEIWNLVF+QF +++      LP   +DTGMG
Sbjct: 238  GPCTEIHFDRIGNRD-AASLVNNDDPTCIEIWNLVFIQFNRESDGSLRSLPAKHVDTGMG 296

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----------KYEGNNIVNHRVIVDH 278
             ER+ ++LQ K +NYD D+F  L  A  Q+ G+              G   + +RV+ DH
Sbjct: 297  FERLTSILQNKMSNYDTDVFMPLFDAIHQLAGVGIQPYSGKVGSDDVGKVDMAYRVVADH 356

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
            +R+ SF IADG  P NEGR YVLRRI+RRA+ +    L   +     L+      MG  +
Sbjct: 357  IRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLMAKQGFFSSLVDVFVRVMGDVF 416

Query: 338  PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395
            PEL   +  I++ ++ E+  F  T+ +G          + ++   +L+G  AF L+DT+G
Sbjct: 417  PELKDNEKKIKDIIKDEEASFENTIAKGYERFKKAADAVKENGGAVLSGQDAFVLWDTYG 476

Query: 396  LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
             P+D+ + +    GL+ +D+  FN ++EE R +AR      G  +       + +    +
Sbjct: 477  YPIDLTEVMAVDFGLS-VDMEGFNASMEEARQKARNARYKAGGKSI------VLDANATS 529

Query: 456  QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            +            ++          P       SS+VKAI    E +  A   +   +V 
Sbjct: 530  E------------LRNQGLASTNDSPKFQHEVHSSVVKAIYTGSEFIATASGDEDFGLVL 577

Query: 516  DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL----RTEMSL 571
            + T FYAE GGQ+ DTG   G      + +VQ  A    +H      G           +
Sbjct: 578  ESTSFYAEQGGQIYDTGSIEGPSGSFTVNNVQVFAGY-VLHIGSFLEGPDSKALSVGDEV 636

Query: 572  VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
               +DY  R  +S NH+ TH+L+ AL  +LG HV Q GS + P+ LRFD +H KP+   +
Sbjct: 637  KCKVDYTRRTLISPNHTCTHMLNFALKEVLGDHVDQKGSIVLPEKLRFDFSHGKPVQPED 696

Query: 632  LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-------- 682
            L+ IE  VN  I   L V  + +   DA   +G  A+ G  Y D VRVVS+         
Sbjct: 697  LRKIEYIVNKQIKDELEVSAQEIKLADAKRINGLRAVFGEIYPDPVRVVSIGCKVEDLLA 756

Query: 683  ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLM 736
                ++    S+ LCGGTH+S+T +     ++SE  I  G+RRI A+T +   +A     
Sbjct: 757  NPESKEWLSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECASQAMKLAS 816

Query: 737  GQDEKLKSLASFLKVSQG---------------------NVVGRVEEIWEEYRKLQL--- 772
              D  +   +     +                       ++ G + ++ ++ RK +    
Sbjct: 817  SIDTDINEASKLDGATLEKKIGSIKNTLDAAAIPAARKADLRGNISKLEDQLRKAKKKMG 876

Query: 773  -IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGI 830
              + ++ ++  ++           F    +   +D+  ++  +     + +S  IM+   
Sbjct: 877  EENIQKAVKTVIDAAEATLSEGKPFCVAHVDVGLDTTAVREAVVKAMNRFKSLPIMVFST 936

Query: 831  SK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             +   KA +   V  D  + F  +D    S   L G GGGG+  +AQ  G + ++  +A+
Sbjct: 937  DEASNKAVIYAGVPPDAPNGFKVLDWLTPSIAPLKGRGGGGKNGLAQGQGSDASRVKEAM 996

Query: 890  AGVASF 895
                  
Sbjct: 997  ELATQI 1002


>gi|225683316|gb|EEH21600.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 962

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/969 (31%), Positives = 463/969 (47%), Gaps = 103/969 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF+ NGH  +PSSS++P +DPTL+F N+GM  +K IF G  +P       +  
Sbjct: 17  VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD
Sbjct: 77  HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA  LW    G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+
Sbjct: 196 EIHYDRI-GGRNASHLVNQDDPNVLEIWNNVFIQYNREQDKSLRPLPNKHVDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ KT+NYD D+F  L +   ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKTSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342
            I+DG +P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPEIKR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
               + E L  E+  F KTLDRG  L +     +     + L+G   ++LYDT G P+D+
Sbjct: 375 KATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  ID   F +     R RA+  S G G  T + +  ++ +          
Sbjct: 435 TQLMAEERGLK-IDNGEFEE----ARLRAKEASKGQGKLTKDVVKLTVHDLG-------- 481

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                      D               ++S +KAI    + V+       G++  ++ D+
Sbjct: 482 ------LLETMDDVPKTDDSAKFGRGNITSQIKAIYHNKKFVDSSKGIPEGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  I DG      +  +   G  +H   ++ G      S++   D 
Sbjct: 536 TNFYAEQGGQEYDTGKIIIDGKAELAVEDVQVYGGYVLHTGFMKYGSFNVNDSVIAEYDE 595

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L+ IE 
Sbjct: 596 LRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEEIER 655

Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V    +        +G  A+ G  Y D VRVVSV               
Sbjct: 656 ISTDYIRQNCAVYGKDVPLSIAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVHDPR 715

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A           K  
Sbjct: 716 WKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEA----HEVQRIAKEF 771

Query: 746 ASFLK-------VSQGNVVGRV--------------------------EEIWEEYRKLQL 772
              LK         +  +  ++                          +++ E  +  Q 
Sbjct: 772 GERLKRFEKMELGPKKEMEAKLLQVDLNQLTISSVEKAQFREKFTQIHKKVLEGQKAAQK 831

Query: 773 IHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           + +K+ L   +      +  D  + +  +    ++K +   ++ ++ K+Q   + +    
Sbjct: 832 LESKKALDAIMGYFQAPENNDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYVFAAD 891

Query: 832 KE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           KE  K      V E+L     +  D A   A V+ GG  GG+  ++   G +  K D AI
Sbjct: 892 KEAGKIVHGCHVAENLSQQGASPNDWANSVANVV-GGRAGGKGPISIGNGTDAEKLDDAI 950

Query: 890 AGVASFLKK 898
                +L+K
Sbjct: 951 KAATEYLEK 959


>gi|306818740|ref|ZP_07452462.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|307700826|ref|ZP_07637851.1| alanine--tRNA ligase [Mobiluncus mulieris FB024-16]
 gi|304648426|gb|EFM45729.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|307613821|gb|EFN93065.1| alanine--tRNA ligase [Mobiluncus mulieris FB024-16]
          Length = 894

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/926 (34%), Positives = 492/926 (53%), Gaps = 64/926 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F  NGHE+ PS SLI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEIRQRWLDYFAANGHEVRPSVSLISP-DPSILFTIAGMVPFIPYIVGTETAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  ++++T+++ED+EA+++W K  GL    I ++   + FW   + GP G C+EI 
Sbjct: 116 KYGLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFI----LPKMSIDTGMGL 230
           +D+G    P G P    +G+R++E+WNLVF +F + + K + +     L + +IDTG+GL
Sbjct: 176 YDRGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ+K N Y+ID    +IQ +++++G KY  +     V+ RV+ DH+RS+  LI 
Sbjct: 236 ERLAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRR+MRRA+   RLLG  E +M  LLPA    M  +YPEL      I
Sbjct: 296 DGVRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            +   +E++ F +TLD G V+LD  V         L+G+ AF+L+DT+G PL +  +I  
Sbjct: 356 SDVAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEIAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462
              +  +D   F + + EQ+ RARA ++   +G  +  ++  L EK G T   +F+GY  
Sbjct: 416 EAKVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGYTE 474

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  I+Q G+ V  A +   +EV+ D+TPFYA
Sbjct: 475 TSAP-----------------------AKVIGILQDGKPVPAASAPATIEVLLDRTPFYA 511

Query: 523 EAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G   +  G    + DVQ   +G+ +H   +  G +        TID + R 
Sbjct: 512 EAGGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRG 571

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  H++TH++H  L   LG   +Q GS   P  +RFD  +SKP+++  L+ +E   N+
Sbjct: 572 AIARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANE 631

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  NL V+   M  E+A  +GA A+ G KY   VR+V +        S   CGGTHV  
Sbjct: 632 RLRANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSKEFCGGTHVPL 687

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I  L ++SE S+ +G+RRIEA+ G  A  +   +   +  +   +     ++V R+ 
Sbjct: 688 TGAIGSLMVLSEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERIT 747

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + E  +  +    K +L   + +L     S   I    F+   +S     +L+     L
Sbjct: 748 SMMERLKAAEKELEKTRLAALLSNLDNYVASAQNICGTKFICQSVSAGSVDDLRQAATQL 807

Query: 817 Q---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
           +    K +S ++ L    KE K  +++   E   ++   A  L +  A  + GGG GG+ 
Sbjct: 808 RGRFSKTESVVVALGAKIKE-KPMMVVATNEAAREKGVKAGALVKAGAAAMQGGG-GGKD 865

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            +AQ GG  G   +  +      L++
Sbjct: 866 DLAQGGGAPGGSLENGLKAATIELQQ 891


>gi|317182490|dbj|BAJ60274.1| alanyl-tRNA synthetase [Helicobacter pylori F57]
          Length = 847

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/891 (36%), Positives = 485/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPNIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVLKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFAGYETTECCTKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + +A   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 467 --------------DFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LG 
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGP 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVMAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V 
Sbjct: 737 VDLPVEKIHGVDLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGV- 791

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           +++     A   A   A++LGG G GGR   A +GG +  K   A++   +
Sbjct: 792 KNVP--IKANAWANEVAQILGGKG-GGRGDFASAGGKDIEKLQAALSLAKN 839


>gi|1673366|emb|CAA80381.1| cytosolic tRNA-Ala synthetase [Arabidopsis thaliana]
          Length = 955

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/956 (31%), Positives = 459/956 (48%), Gaps = 89/956 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P          
Sbjct: 16  VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L 
Sbjct: 76  CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 135

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCGPC+
Sbjct: 136 TDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 193

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG ER+
Sbjct: 194 EIHYDRIGNRD-AASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 252

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+ SF
Sbjct: 253 TSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSF 312

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL + 
Sbjct: 313 AIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEH 372

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  I + ++ E+  F KTL +G+           +   L+GD AF L+DT+G PLD+ Q 
Sbjct: 373 EKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDLTQL 431

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   RGL  +D+  FN+A+EE R R+R+       G                     D  
Sbjct: 432 MAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 473

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S   K                   S +KAI      +E + +   V +V   T FYAE
Sbjct: 474 ATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAE 533

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQ+ DTG   G      + +VQ      + + +   E G +     ++  +DY+ R+ 
Sbjct: 534 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKL 593

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  VN  
Sbjct: 594 IAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 653

Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690
           I   L V ++     +A    G  A+ G  Y D VRVVS+              +  + S
Sbjct: 654 IKDELDVFSKEAVLSEAKRIKGLRAVFGEAYPDPVRVVSIGRKVEDLLADPENNEWSLLS 713

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746
           S  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L       + +     
Sbjct: 714 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 773

Query: 747 ----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784
                     S LK              ++  ++  +  E RK Q   A++ L+ +V+  
Sbjct: 774 AEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLA 833

Query: 785 --DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                        F    +   +D+  ++  +  + +K    I++        KA V   
Sbjct: 834 TEAAESAASDGKTFCIIQLDVGLDAAAVQEAVSKVMEKKGMSIMVFSTDESTNKAVVCAG 893

Query: 842 VTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           V E  D     +  +    +   L G  G G+  +A   G + ++   A+   +SF
Sbjct: 894 VPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSF 949


>gi|295672445|ref|XP_002796769.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226283749|gb|EEH39315.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 962

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/969 (31%), Positives = 464/969 (47%), Gaps = 103/969 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF+ NGH  +PSSS++P +DPTL+F N+GM  +K IF G  +P       +  
Sbjct: 17  VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD
Sbjct: 77  HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA  LW    G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   IDTGMG ER+
Sbjct: 196 EIHYDRI-GGRNASHLVNQDDPNVLEIWNNVFIQYNREQDKSLRSLPNKHIDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L +   ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKSSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342
            I+DG +P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPEIKR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
               + E L  E+  F KTLDRG  L +     +     + L+G   ++LYDT G P+D+
Sbjct: 375 KATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  ID   F +     R RA+  S G G  T + +  ++ +          
Sbjct: 435 TQLMAEERGLK-IDNGEFEE----ARLRAKEASKGQGKLTKDVVKLTVHDLG-------- 481

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                      D               ++S +KAI    + V        G++  ++ D+
Sbjct: 482 ------LLETMDDVPKTDDSAKFGRGNITSQIKAIYHNKKFVNSSKDIPEGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  I DG      +  +   G  +H   ++ G      S++   D 
Sbjct: 536 TNFYAEQGGQEYDTGKIIIDGKAELTVEDVQVYGGYVLHTGFMKYGSFNVNDSVIAEYDE 595

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L+ IE 
Sbjct: 596 LRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEEIER 655

Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V    +        +G  A+ G  Y D VRVVSV               
Sbjct: 656 ISTDYIRQNCAVYGKDVPLSIAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVHDPR 715

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A           K  
Sbjct: 716 WKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEA----HEVQRIAKEF 771

Query: 746 ASFLK-------VSQGNVVGRV--------------------------EEIWEEYRKLQL 772
              LK         +  +  ++                          +++ E  +  Q 
Sbjct: 772 GERLKRFEKMELGPKKEMEAKLLQVDLNQLTISAVEKAQFREQFTQIHKKVLEGQKAAQK 831

Query: 773 IHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           + +K+ L   +      +  D  + +  +    ++K +   ++ ++ K+Q   + +    
Sbjct: 832 LESKKALDAIMGYFQAPENKDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYVFAAD 891

Query: 832 KE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           KE  K      V E+L     +  D A   A V+ GG  GG+  ++   G + +K D+AI
Sbjct: 892 KEAGKIVHGCHVAENLSQQGASPNDWANSVANVV-GGRAGGKAPISIGNGTDADKLDEAI 950

Query: 890 AGVASFLKK 898
                +L+K
Sbjct: 951 KAATEYLEK 959


>gi|217034055|ref|ZP_03439476.1| hypothetical protein HP9810_893g2 [Helicobacter pylori 98-10]
 gi|216943450|gb|EEC22904.1| hypothetical protein HP9810_893g2 [Helicobacter pylori 98-10]
          Length = 847

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/891 (36%), Positives = 482/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-VRMDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNEFAGYETTECSAKALGFFDS-------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 467 --------------DFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED+VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDSVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++  +   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERIILACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++LGG G GGR   A +GG    K   A+    +
Sbjct: 793 NAP---IKANAWANEVAQILGGKG-GGRGDFASAGGKGIEKLQAALNLAKN 839


>gi|194386694|dbj|BAG61157.1| unnamed protein product [Homo sapiens]
          Length = 992

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/996 (31%), Positives = 473/996 (47%), Gaps = 118/996 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKI-------SGLSADKIIRITTNDNFWS 162
           F +   RLY+T +  DE        E  ++W+ +         L   KI+     DNFW 
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNLGTYLYSFVRLDDTKILPGNMKDNFWE 185

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           M +TGPCGPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK 
Sbjct: 186 MGDTGPCGPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKK 244

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHR 273
           SIDTGMGLER+ +VLQ K +NYD DLF    +A ++ TG +               + +R
Sbjct: 245 SIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYR 304

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332
           V+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+  A   L  +      L+  +   
Sbjct: 305 VLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRCAHEKLNASRGFFATLVDVVVQS 364

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           +G A+PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYD
Sbjct: 365 LGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYD 424

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +    
Sbjct: 425 TYGFPVDLTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAI- 478

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLC----QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
                   + LR       D               +     + V A+ ++   VEE  +G
Sbjct: 479 --------EELRARGLEVTDDSPKYNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTG 530

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           Q+  VV D+T FYAE GGQ+ D G  +        + + T    +  G +V H     G 
Sbjct: 531 QECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGD 590

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L+    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T  
Sbjct: 591 LKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAK 649

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE- 682
             +++ ++K  E+  N++I     V T+           G  A+    Y D VRVVS+  
Sbjct: 650 GAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGV 709

Query: 683 ----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
                        G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+
Sbjct: 710 PVSELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQ 769

Query: 733 SHLMGQDEKLKSLA---SFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRK 778
             L   +   K L+   + +K       +V   + ++ E        +++K +L    + 
Sbjct: 770 KTLRKAESLKKCLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKS 829

Query: 779 LQLNVEDLSCHKIADVN-------------------FMSHIISEVDSKE----------- 808
           L+  ++DL     ADV                     +  + S   +K            
Sbjct: 830 LKKVMDDLDRASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKATQGPGSPPLGL 889

Query: 809 -----LKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAK 861
                L   +   +        ML  +  E  K + L  V ++  +R   A +  +  + 
Sbjct: 890 ISSLALNEALKLFKMHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG 949

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            L  G GGG+   AQ+ G N     +A+    SF +
Sbjct: 950 -LMDGKGGGKDVSAQATGKNVGCLQEALQLATSFAQ 984


>gi|227875429|ref|ZP_03993570.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35243]
 gi|227843983|gb|EEJ54151.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35243]
          Length = 894

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/926 (34%), Positives = 490/926 (52%), Gaps = 64/926 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F  NGHE+ PS SLI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEIRQRWLDYFAANGHEVRPSVSLISP-DPSILFTIAGMVPFIPYIVGTETAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  ++++T+++ED+EA+++W K  GL    I ++   + FW   + GP G C+EI 
Sbjct: 116 KYGLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFI----LPKMSIDTGMGL 230
           +D+G    P G P    +G+R++E+WNLVF +F + + K + +     L + +IDTG+GL
Sbjct: 176 YDRGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ+K N Y+ID    +IQ +++++G KY  +     V+ RV+ DH+RS+  LI 
Sbjct: 236 ERLAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRR+MRRA+   RLLG  E +M  LLPA    M  +YPEL      I
Sbjct: 296 DGVRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDG-VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            +   +E++ F +TLD G V+LD  V         L+G+ AF+L+DT+G PL +  +I  
Sbjct: 356 SDVAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEIAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462
              +  +D   F + + EQ+ RARA ++   +G  +  ++  L EK G T   +F+GY  
Sbjct: 416 EAKVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGYTE 474

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  I+Q G+ V  A +   +EV+ D+TPFYA
Sbjct: 475 TSAP-----------------------AKVIGILQDGKPVPAASAPATIEVLLDRTPFYA 511

Query: 523 EAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G   +  G    + DVQ   +G+ +H   +  G +        TID + R 
Sbjct: 512 EAGGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRG 571

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  H++TH++H  L   LG   +Q GS   P  +RFD  +SKP+++  L+ +E   N+
Sbjct: 572 AIARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANE 631

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  NL V+   M  E+A  +GA A+ G KY   VR+V +        S   CGGTHV  
Sbjct: 632 RLRANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSKEFCGGTHVPL 687

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I  L ++ E S+ +G+RRIEA+ G  A  +   +   +  +   +     ++V R+ 
Sbjct: 688 TGAIGSLMVLGEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERIT 747

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + E  +  +    K +L   + +L         I    F+   +S     +L+     L
Sbjct: 748 SMMERLKAAEKELEKTRLAALLSNLDNYVALAQNICGTKFICQSVSAGSVDDLRQAATQL 807

Query: 817 Q---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
           +    K +S ++ L    KE K  +++   E   ++   A  L +  A  + GGG GG+ 
Sbjct: 808 RGRFSKTESVVVALGAKIKE-KPMMVVATNEAAREKGVKAGALVKAGAAAMQGGG-GGKD 865

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            +AQ GG  G   +  +      L++
Sbjct: 866 DLAQGGGAPGGSLENGLKAATIELQQ 891


>gi|271967372|ref|YP_003341568.1| alanine--tRNA ligase [Streptosporangium roseum DSM 43021]
 gi|270510547|gb|ACZ88825.1| Alanine--tRNA ligase [Streptosporangium roseum DSM 43021]
          Length = 890

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/933 (34%), Positives = 478/933 (51%), Gaps = 82/933 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL FF++ GH ++PS+SLI   DPTL+   +GMVPFK  F GQ+KP +   
Sbjct: 1   MESAEIARRFLRFFEERGHTVVPSASLIAE-DPTLLLVPAGMVPFKPYFLGQQKPPFNRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE+AI LAW+LLTK     
Sbjct: 60  TSVQKCVRT----PDIDEVGKTTRHATFFQMLGNFSFGDYFKEQAIPLAWELLTKPESEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   Q RL++TVY +D+EA+ +W    G+ +++I R    DN+W M   GP GPCSEI+
Sbjct: 116 GFGFPQERLWVTVYQDDDEAYGIWHDKVGVPSERIQRRGLEDNYWHMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   +  RY+E+WN VFMQF+      + +      LP  S+DTGMGL
Sbjct: 176 YDRGPEY-GRDGGPVADENRYLEVWNNVFMQFQLSAVRSKVDFDVAGELPARSVDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ERMA +LQ   N Y+ID    ++  + ++T  +Y  +    V+ RVI DH+R+   L+AD
Sbjct: 235 ERMAAILQGVDNIYEIDTTYKILDRAAELTKTRYGRDERADVSLRVIADHVRTGVMLVAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP-ALCTEMGSAYPELIQAKLLI 347
           G+LP+NEGRGYVLRRI+RRA+   RLLG  E   MH L       MG  YPEL      I
Sbjct: 295 GVLPSNEGRGYVLRRILRRAIRNLRLLGAGEERYMHELTAVTIDVMGEQYPELKADAPQI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
              + +E+  F  TL  G  + D  +    +     L G+ AF+L+DT+G P+D+  ++ 
Sbjct: 355 HGVIDAEEASFLGTLRTGTAIFDVAVEETRRKGKGTLAGEQAFQLHDTYGFPIDLTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464
             +GL  +D   F + ++EQR RA+A +    +G  +  ++  + EK G  +F+GYD + 
Sbjct: 415 SEQGLK-VDEEGFRRLMKEQRDRAKADAAAKKTGNADISVFGQILEKTGRVEFLGYDQV- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  ++  G  V  A +G +VEVV  +TPFYAE 
Sbjct: 473 ----------------------TAEAEVIGLLVGGAPVPAAGAGTEVEVVLGRTPFYAEG 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQL D G    DG  ++I DVQ    G+ VH   V  G +R        ID + RR +S
Sbjct: 511 GGQLADQGVIRTDGAEVEIVDVQSPVSGVVVHRGKVRAGEIRVGDQAQAEIDVERRRAIS 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +H+ATHL+H      LG   +Q GS  +P   RFD T +  +  + L+ +ED VN ++ 
Sbjct: 571 RSHTATHLVHRGFRNALGETAAQAGSENSPGRFRFDFTAAGAVAPSMLRDVEDEVNAVLI 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +L V     ++ +A A GA AL G KY + VR+V V     G +S  LCGGTHVSS+G+
Sbjct: 631 NDLTVNAFHTSQAEARAMGALALFGEKYGETVRIVEV-----GDYSRELCGGTHVSSSGQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ E+SI AG+RR+EA+ G  A   L  +   +  L+  LK  +  +  R++ I 
Sbjct: 686 LGLVKVLGEASIGAGVRRVEALVGLDAFRFLARESVLVAQLSEQLKARREELPERIDGIV 745

Query: 765 EEYRKLQLIHAKRKLQLNV-----EDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
              R  +    K +    +            +  V+ ++          +L+ +   ++ 
Sbjct: 746 TRLRAAEKELDKLRSAQVLAMAGEMAAGARDLHGVSVVTRRAPDGTSPDDLRKLALDVRG 805

Query: 819 KI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLA----------RLSAKVLGG 865
           +   +   +++V      +  V+ VV +    R   A  L                 +  
Sbjct: 806 RFTGEQPAVVVVAGVPSDRPVVVAVVNDAGRGRGLKAGQLVGVAAKALGGGGGGKDDVA- 864

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                     Q GG      D A+  V   + +
Sbjct: 865 ----------QGGGARPEAIDDALVAVEQAIAQ 887


>gi|325282994|ref|YP_004255535.1| alanyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324314803|gb|ADY25918.1| alanyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 892

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/933 (34%), Positives = 484/933 (51%), Gaps = 97/933 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58
             + IR  FLEFF    H +LP   ++   DPT MFT +GM  FK  F G      +   
Sbjct: 16  TTADIRRKFLEFFHSKEHLILPGHPVVAP-DPTTMFTVAGMQQFKPQFMGAPAVFSEGAS 74

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + VTT QKCVR     +D++NVGRT RH + FEM+GNFSFG YFK  AI  AW+ LT  +
Sbjct: 75  KRVTTAQKCVRM----DDIENVGRTRRHLSLFEMMGNFSFGDYFKRDAIAWAWEFLTSPE 130

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171
               D  R+Y+T+Y +D+EAF+ W +  GL  D I R   ++NFW          GPCGP
Sbjct: 131 WMGFDPERMYVTIYVDDDEAFRYWTEDHGLPKDHIHRFGADENFWPADAPLKGPNGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQNKQER-----FILPKMS 223
           CSEI++D+G               E  R++E+WNLVF +F++Q   E        LP  +
Sbjct: 191 CSEIYYDRGPKYGDDSWADYAKTRESARFLEVWNLVFPEFDRQGLDESGQPILAPLPFKN 250

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283
           IDTGMGLER+A+V+Q+  + Y  D+F  LI    +++G  YEG + V+HRVI +H RS S
Sbjct: 251 IDTGMGLERVASVVQDVPDFYTNDVFAPLIDKIVELSGRPYEGESSVSHRVIAEHARSVS 310

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            +IADG+  +N GRGYV+R+++RRA  +A LLG  EP +  L+P +  +M   YPEL+  
Sbjct: 311 MVIADGVALSNTGRGYVVRKVLRRASRHAYLLGLNEPSIYRLVPLVVEKMKDGYPELVAE 370

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  ++  +R+E+ERF +TL+ G+  L+G+L  LG +++L+G+ AF LYDT+G PLD+ Q+
Sbjct: 371 QERVQAAIRAEEERFLRTLEGGIQRLNGLLEELGSEKVLSGEDAFTLYDTYGFPLDLTQE 430

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I    G   +D+  +  ALE  +  ARA S    S   +       +    T+F+GYD L
Sbjct: 431 IAAEHG-VDVDVTGYELALERAQETARAGSKFGKSELFDAG-AEAVQNLPQTEFVGYDQL 488

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                       V A++      +  V G K  VV  +TPFYAE
Sbjct: 489 D-----------------------AEGEVLAVL------DSEVEGHK-TVVLSRTPFYAE 518

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GG++GDTG     G   ++ D +K    +F+H   V RG L     +   +  +    +
Sbjct: 519 GGGEVGDTGRLEWAGGEGRVLDTRKIGG-VFLHEVEVLRGELSQGAGVRGVVGAER-AAI 576

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             +H+ATHLLH AL  +LGS V Q GS + PD LRFD TH+  +++ EL ++E  V+  +
Sbjct: 577 QRHHTATHLLHAALRAVLGSGVRQAGSLVAPDRLRFDFTHTAALSAEELAAVETLVSRWV 636

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG----GVHSSALCGGTHV 699
           + N PV+ + M  E+A A+GA AL G KY D VRVV VE +       V S  LCGG HV
Sbjct: 637 SANFPVIWQEMPIEEAKAAGATALFGEKYGDTVRVVRVEGDVDYGGAAVSSMELCGGAHV 696

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             TG+I    ++S+ ++ AG+RRIEA+ G+ A + +  +  +L   AS L  S   +  R
Sbjct: 697 RRTGDIGAFVLLSDENVAAGVRRIEALAGEAATAWVRERLGRLNRTASLLNTSAEGLEDR 756

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVM 813
           +  +  + +  +   A+ + QL              ++      S  +S V+  EL+   
Sbjct: 757 IAGLQHQLKASEKEMAQVRAQLAEAQMGGGNSADTRELGGFKVASLKLSGVEGNELRGAA 816

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR-- 871
           D L ++  + ++++       K  V+    + +    +A  L              G+  
Sbjct: 817 DRLLEQSGADLVVIAS----DKGLVVKATKDAVAKGAHAGQLV-------------GKLA 859

Query: 872 ----------PHMAQSGGPNGNKADQAIAGVAS 894
                     P MAQ+G  +   A  A+    S
Sbjct: 860 AAGGGRGGGRPDMAQAGITDAAGALGALDTALS 892


>gi|294932634|ref|XP_002780365.1| cytosolic tRNA-Ala synthetase, putative [Perkinsus marinus ATCC
           50983]
 gi|239890298|gb|EER12160.1| cytosolic tRNA-Ala synthetase, putative [Perkinsus marinus ATCC
           50983]
          Length = 982

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/967 (31%), Positives = 458/967 (47%), Gaps = 92/967 (9%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----A 60
           +R TF+ FF +K G   L SS ++P NDPTL+F N+GM  FK IF GQ    +       
Sbjct: 30  VRDTFINFFVEKKGATFLKSSPVVPHNDPTLLFINAGMNQFKPIFLGQLDKDHPFYGVKR 89

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T  QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG +FK   I  AW+LLT+ F L
Sbjct: 90  ATNTQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGNWSFGDFFKAEQIPWAWELLTEVFGL 149

Query: 121 DQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           D  RLY T Y           D+EA  LW K   L  D +I     +NFW M +TGPCGP
Sbjct: 150 DPARLYATYYGGDPKEPEVPADDEARDLWLKF--LPPDHVIPFGMKENFWEMGDTGPCGP 207

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           CSEI +D            + +    IEIWNLVFMQ+ ++N      LP   +DTGMG E
Sbjct: 208 CSEIHYDNVGGRDASA-LVNMDDPTVIEIWNLVFMQYNRENDGSLTRLPHPCVDTGMGFE 266

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV------TGMKYEGNNIVNHRVIVDHLRSSSFL 285
           R+   L  KT+NYD D+FK +  A ++          +   N  V +RV+ DH+R+ +  
Sbjct: 267 RICAALTGKTSNYDTDVFKPIFAAIQEQIPGLRSYTGELTDNIDVGYRVVADHIRTLTVA 326

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           ++DG +P+NEGRGYVLRRI+RRA+ Y    L         L+PA+   +G A+PE++  +
Sbjct: 327 LSDGAVPSNEGRGYVLRRILRRAVRYGTEKLNAPAGFFNKLVPAVVESLGEAFPEIVANQ 386

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             ++  +  E+E+F +TL+RG+   +   S     ++L+G  AF+L+ T G P D+ Q +
Sbjct: 387 ADVQALIADEEEQFARTLERGIREFNSRASKTE-GKVLSGRDAFELFTTFGFPCDLTQVM 445

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG+  +D+ SF +  E  R +++  +        +                 Y    
Sbjct: 446 AQERGMT-VDVQSFEEEFEAFRQKSKESNNFTMGSNLQLFADQ----------TNYLENE 494

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-----SGQKVEVVFDQTP 519
                 ++                SS + AI    + ++        + + + +V   TP
Sbjct: 495 LKVPKTDETCKYAWDSAKGEGGQWSSQLCAIWDGKKWLDTIDVKSGYAQKTIGLVLSVTP 554

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE----RGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +      +      +  G +V H           L+    +  ++
Sbjct: 555 FYAEQGGQIFDVGTIVDPLTGARFDVKNTQKFGQYVLHIGSMDSAVDAALKVGSEVRASV 614

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           DYQ R  ++ NH+ATH+L+ AL  +LG    Q GS + P  LRFD   +KPIT+ +LK I
Sbjct: 615 DYQRRALIAKNHTATHILNFALRQVLGDKCDQRGSLVDPSRLRFDFAQNKPITNEQLKEI 674

Query: 636 EDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEY----------- 683
           E   N  I ++L V    +   +     G  A+ G  Y D VRVVSV             
Sbjct: 675 EQICNQQIQKHLNVFANDVQLAKAKDIRGLRAVFGETYPDPVRVVSVGEAIDTLLKETEV 734

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ-RARSHLMGQDEKL 742
           + G   S   CGGTHV ++ EI    I +E  I  GIRRI A TG   A    +   + +
Sbjct: 735 DFGHEFSIEFCGGTHVGNSQEIFKFVITAEEGIAKGIRRIVAATGPQAAVEASIKTTDLM 794

Query: 743 KSL--ASFLKVSQGNV-VGRVEEIWEEYRKLQLIHAKRKL-------------------- 779
           + L  A  LK    +  + ++     E +++ L   K  L                    
Sbjct: 795 EELNSAKALKGEVLDHAIAQLRNKLNEEKEVSLTAKKDMLCLLDDLKTQQIKEEKKKAKE 854

Query: 780 ----QLNVEDLSCHKIA--DVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGIS 831
                  + +     I   +  F+     E+  D+K +++ +D++ KK+    + +V  S
Sbjct: 855 VQKQAAKIGEQLAESIGASEGKFLITQCDELLADAKAMQNAVDSIAKKLPELPVCIVSAS 914

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
              K +VLI V + +  + +A +   +  +   GG GGG P  AQ      +K  + I  
Sbjct: 915 S-SKLAVLITVPKSMSKKVSAKEWLNVCLETC-GGKGGGSPMKAQGQSQEPSKVAETIEV 972

Query: 892 VASFLKK 898
              + +K
Sbjct: 973 SKQWAEK 979


>gi|218184221|gb|EEC66648.1| hypothetical protein OsI_32912 [Oryza sativa Indica Group]
          Length = 953

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/963 (31%), Positives = 457/963 (47%), Gaps = 95/963 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            S +R TF+ FF+   H   PSS ++P +DPTL+F N+GM  FK +F G   P       
Sbjct: 9   ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 68

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ +
Sbjct: 69  RRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQVY 128

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        E+  +W K   L  +K++     DNFW M +TGPCG
Sbjct: 129 KLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPCG 186

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI FD+           + +    IEIWNLVF+QF ++       LP   +DTGMG 
Sbjct: 187 PCTEIHFDRVGNRD-AASLVNNDDPTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGMGF 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----------KYEGNNIVNHRVIVDHL 279
           ER+ ++LQ K +NYD D+F  +  A  Q+ G            +      + +RV+ DH+
Sbjct: 246 ERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVADHI 305

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ SF IADG  P NEGR YVLRRI+RRA+ +    L   +     L+      MG  +P
Sbjct: 306 RTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDVFP 365

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396
           EL   +  I++ ++ E+E F  TL +G          + +    +L+G  AF L+DT+G 
Sbjct: 366 ELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVKESGGTVLSGQDAFVLWDTYGY 425

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL+ +D   F+ A+EE R +AR      G         S+     AT 
Sbjct: 426 PVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDANAT- 476

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                       ++          P        S+VKAI    E V  A   +   +V +
Sbjct: 477 ----------AQLRNQGLASTDDSPKYGYKDNDSVVKAIYTGSEYVSAASGDEDFGLVLE 526

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL--RTEMSLVLT 574
            T FYAE GGQ+ DTG   G      +T+VQ  A    +H     +G         +   
Sbjct: 527 STSFYAEQGGQIYDTGKIEGSFGSFNVTNVQVFAGY-VLHMGSFTKGSKALSVGDKVACK 585

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +DY  R  ++ NH+ TH+L+ AL  ILG HV Q GS + P+ LRFD +H KP+   +L+ 
Sbjct: 586 VDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLRK 645

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           IE  VN  I   L V  R +   DA   +G  A+ G  Y D VRVVSV            
Sbjct: 646 IESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLANPE 705

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ---- 738
            ++    S+ LCGGTH+ +T E     ++SE  I  G+RRI A+T + A   +       
Sbjct: 706 SKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHASDAIKDASSID 765

Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQL----IH 774
                         ++ + S+ S L         + ++ GRV ++ +E RK +      +
Sbjct: 766 SEINEASKLEGAILEKTIASIKSKLDTALIPAARKADLKGRVSKLEDELRKAKKKMGEEN 825

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK- 832
            ++ ++  ++           F    +   +D+  ++  +  ++ + +   IML    + 
Sbjct: 826 IQKAVKFAIDAAQTALSEGKRFCVAHVDVGLDTSAIREAVIKVKDQ-KDLPIMLFSTDEA 884

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             KA +   V     +    +D    S   L G GGGG+  +AQ  G   ++  +A+   
Sbjct: 885 TNKAVIYAGVPPSAANSLKVLDWLTPSIAPLKGKGGGGKNGIAQGQGTEASQLKEAMEVA 944

Query: 893 ASF 895
              
Sbjct: 945 TQI 947


>gi|193656980|ref|XP_001950431.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon
           pisum]
          Length = 955

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/958 (32%), Positives = 468/958 (48%), Gaps = 77/958 (8%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           +   IR  +++FF  K GHE + SSS++P +DPTL+F N+GM  FK IF G   P     
Sbjct: 4   SAKEIRDRYIKFFIDKKGHEYVYSSSVVPVDDPTLLFANAGMNQFKPIFLGTVAPSSDMA 63

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            ++     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK    Q AW+ LT+
Sbjct: 64  KWKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKTEICQWAWEFLTQ 123

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           EF L   RLY+T +        + D E   +W K+ GL+ D II     DNFW M ETGP
Sbjct: 124 EFKLSPDRLYVTYFGGDKKSGLEPDLECKNIWLKL-GLAEDHIIPGNMKDNFWEMGETGP 182

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           +++    +EIWNLVFMQ+ +  +     LPK  ID GM
Sbjct: 183 CGPCSEIHYDRIGN-RLAADLVNQDDPDVLEIWNLVFMQYNRNQEGTLHNLPKKHIDCGM 241

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHL 279
           G ER+ +V+Q+K +NYD DLF+ L  A +  T                  + +RV+ DH 
Sbjct: 242 GFERLVSVIQDKRSNYDTDLFQPLFVAIQNGTNAPPYEGKVGADDIDQKDMAYRVLADHA 301

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +P
Sbjct: 302 RTLTIALSDGGSPDNTGRGYVLRRILRRAVRYATEKLNGKPGFFATLVNVVVDLLGDTFP 361

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I E +  E+E+F +TL RG  LL+  +  L  D+++ G+VA+KLYDT+G P+
Sbjct: 362 EITKDPQQIIEIINEEEEQFLRTLSRGRNLLNRTILKLT-DKVIPGEVAWKLYDTYGFPV 420

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQF 457
           D+   ++  +G   ID+ ++ +     + +A+  S     G  E I   +       T+ 
Sbjct: 421 DLTYLMVEEKGFT-IDMEAYEE----AKKKAQLISQNKVGGDKEVISLDVHALADLQTKG 475

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           I              + V             +S V +I    + V E  + Q+  ++ D+
Sbjct: 476 I---STTDDSPKYNYKAVSDDADAEYTFETCTSTVLSIRLINQFVNEVDTFQECGIILDK 532

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ+ D G  + D       +  +   G  +H  I+E G L+    +VL ID 
Sbjct: 533 TCFYAEQGGQIYDQGSMVKDEFTEFYVNNVQLRGGYILHVGILESGSLKVGDKVVLKIDE 592

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + RR +  NH+ATH L+H L  +LG +++Q GS + PD LRFD  +   +T  ++  +E 
Sbjct: 593 KRRRFVMNNHTATHTLNHTLRVVLGDNLNQKGSLVAPDKLRFDFNNKAALTGDQVAKVEK 652

Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV-----------SVEYED 685
             N++I +N  V  +I    DA    G  A+    Y D VRVV             E   
Sbjct: 653 LTNEVIKRNDTVYAKIAPLNDAKRIKGLRAMFDETYPDPVRVVSVGVTVDKLLTDPEGNS 712

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
           G   S   CGGTH+  TG +    I+SE +I  GIRRI A+TG  A       +E  K +
Sbjct: 713 GLETSVEFCGGTHLHKTGHMECFTILSEEAISKGIRRIVAVTGPEATKAYNRGEELKKDV 772

Query: 746 ASF------LKVSQGNVVGRVEE------IWEEYRK----LQLIHAKRKLQLNVEDLS-- 787
                    L  +  +   ++ +      + EE R     L+   A+ + +  V   S  
Sbjct: 773 MKLDSKDVNLSKAIIDTQDKINKSVIPYWVKEELRSVLSGLKKGIAEEERKQLVAQASEV 832

Query: 788 CHKIA-------DVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKK-ASV 838
              I        D     + +    ++K + +V+  L+  + +  IML+    E K    
Sbjct: 833 AKSIKTKICSESDKTVFIYKLDVGSNTKVMDAVLKLLKADMPNISIMLLSEDTEGKRIYC 892

Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             VV++DL  +   A       A  +  G GGG+   AQ+ G N    +Q I+    F
Sbjct: 893 QCVVSKDLNKKGLMANKWVTKIASCIN-GKGGGKADTAQASGCNETGVEQLISIGEQF 949


>gi|188528029|ref|YP_001910716.1| alanyl-tRNA synthetase [Helicobacter pylori Shi470]
 gi|205830066|sp|B2UV04|SYA_HELPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|188144269|gb|ACD48686.1| alanyl-tRNA synthetase [Helicobacter pylori Shi470]
          Length = 847

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/892 (36%), Positives = 481/892 (53%), Gaps = 57/892 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKSKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  ++I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFERIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++    +  + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISDLASLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G   +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGAC-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTECC----------------- 457

Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 + V        + + +A   Q+V V+ ++TPFYAE GG +GD G  + D     
Sbjct: 458 ------AKVLGFFDSDFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEAA 511

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +LG
Sbjct: 512 IVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE--RLEIAKHHSATHLLQSALREVLG 569

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   
Sbjct: 570 SHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDK 629

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RR
Sbjct: 630 GALALFSEKYAENVRVVSFKE-----ASIELCGGIHVENTGLIGGFRIVKESGVSSGVRR 684

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q           
Sbjct: 685 IEAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APV 735

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             +L   KI  VN +  ++ + D   +K ++D L+ K +  + M+    + ++ ++   V
Sbjct: 736 SVELPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVF-KKENERITLACGV 791

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                    A   A   A++LGG G GGR   A +GG +      A+    +
Sbjct: 792 KNAP---IKANVWANEVAQILGGKG-GGRGDFASAGGRDIENLQAALNLAKN 839


>gi|226288201|gb|EEH43713.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 962

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/969 (31%), Positives = 463/969 (47%), Gaps = 103/969 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF+ NGH  +PSSS++P +DPTL+F N+GM  +K IF G  +P       +  
Sbjct: 17  VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD
Sbjct: 77  HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA  LW    G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+
Sbjct: 196 EIHYDRI-GGRNASHLVNQDDPNVLEIWNNVFIQYNREQDKSLRPLPNKHVDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L +   ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKSSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342
            I+DG +P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPEIKR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
               + E L  E+  F KTLDRG  L +     +     + L+G   ++LYDT G P+D+
Sbjct: 375 KATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  ID   F +     R RA+  S G G  T + +  ++ +          
Sbjct: 435 TQLMAEERGLK-IDNGEFEE----ARLRAKEASKGQGKQTKDVVKLTVHDLG-------- 481

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                      D               ++S +KAI    + V+       G++  ++ D+
Sbjct: 482 ------LLETMDDVPKTDDSAKFGRGNITSQIKAIYHNKKFVDSSKDIPEGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  I DG      +  +   G  +H   ++ G      S++   D 
Sbjct: 536 TNFYAEQGGQEYDTGKIIIDGKAELAVEDVQVYGGYVLHTGFMKYGSFNINDSVIAEYDE 595

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L+ IE 
Sbjct: 596 LRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEEIER 655

Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V    +        +G  A+ G  Y D VRVVSV               
Sbjct: 656 ISTDYIRQNCAVYGKDVPLSIAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVHDPR 715

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A           K  
Sbjct: 716 WKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEA----HEVQRIAKEF 771

Query: 746 ASFLK-------VSQGNVVGRV--------------------------EEIWEEYRKLQL 772
              LK         +  +  ++                          +++ E  +  Q 
Sbjct: 772 GERLKRFEKMELGPKKEMEAKLLQVDLNQLTISAVEKAQFREKFTQIHKKVLEGQKAAQK 831

Query: 773 IHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           + +K+ L   +      +  D  + +  +    ++K +   ++ ++ K+Q   + +    
Sbjct: 832 LESKKALDAIMGYFQAPENKDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYVFAAD 891

Query: 832 KE-KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           KE  K      V E+L     +  D A   A V+ GG  GG+  ++   G +  K D AI
Sbjct: 892 KEAGKIVHGCHVAENLSQQGASPNDWANSVANVV-GGRAGGKGPISIGNGTDAEKLDDAI 950

Query: 890 AGVASFLKK 898
                +L+K
Sbjct: 951 KAATEYLEK 959


>gi|317157868|ref|XP_001826622.2| alanyl-tRNA synthetase, cytoplasmic [Aspergillus oryzae RIB40]
          Length = 1015

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/969 (31%), Positives = 471/969 (48%), Gaps = 95/969 (9%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               S+R  F+++FQKNGH  + S+ ++P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 66   TAKSVRDAFIQYFQKNGHTFVASAPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAN 125

Query: 59   -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
             ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+L+TK 
Sbjct: 126  LKSAVNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAINYSWELMTKI 185

Query: 118  FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + LD +RLY+T ++         D EA +LW K  G+  D I+     DNFW M + GPC
Sbjct: 186  YGLDPQRLYVTYFEGSKEGGLSPDLEAKELW-KAVGVPEDHILPGNMKDNFWEMGDQGPC 244

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPCSEI +D+           +++    +EIWN VF+Q+ +++ +    LP   +DTGMG
Sbjct: 245  GPCSEIHYDRI-GGRNASNLVNQDDPNVLEIWNNVFIQYNRESDRSLKPLPNKHVDTGMG 303

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
             ER+ +VLQ K++NYD D+F  L Q  + +          G++        +RV+ DH+R
Sbjct: 304  FERLVSVLQNKSSNYDTDVFSPLFQTIKDITGARPYQGRFGVEDADGIDTAYRVVADHVR 363

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
            + +F I+DG+ P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +P
Sbjct: 364  TLTFAISDGVAPNNEGRGYVIRRVLRRGARYARKYFRVEIGNFFSKIVPTLVDQMGDMFP 423

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
            E+ + +  + E L  E+  F KTLDRG    +     +    D+ L+G   ++LYDT G 
Sbjct: 424  EVKRKQQDVMEILDEEEISFAKTLDRGERQFEHYAQQAKAKGDDKLHGADVWRLYDTFGF 483

Query: 397  PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            P+D+ + +   RGL   D           RSRA+  S G      + +   + +      
Sbjct: 484  PVDLTRIMAEERGLRIDDTEFEEA-----RSRAKEASKGQKKAAADTVKLDVHDLG---- 534

Query: 457  FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                      K  K +               +++ VKAI          E+   G ++ +
Sbjct: 535  ----------KLEKMNDVPKTNDSAKFDRGNITAQVKAIYHGKSFHLSTEQIPEGDQLGL 584

Query: 514  VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            + D+T FYAE GGQ  DTG  + DG         +   G  +H   ++ G L     ++ 
Sbjct: 585  ILDRTNFYAEQGGQENDTGRIVIDGQAELEVGDVQLYAGYVLHTGFMKYGSLSVGDEVIC 644

Query: 574  TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H  P+T  +L+
Sbjct: 645  EYDELRRWPIRNNHTGTHILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKSPVTDKDLE 704

Query: 634  SIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682
             IED   + I QN  V    +        SG  A+ G  Y D VRVVSV           
Sbjct: 705  RIEDISTEYIRQNCAVYSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVELEEILKNV 764

Query: 683  -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736
                    S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A          
Sbjct: 765  KDPRWEKVSIEFCGGTHVQKTGDIKELVILEESGIAKGIRRIIAVTGEDAHEVQRVALGF 824

Query: 737  --------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772
                           +++  K +   L     + V +           ++I +  +  Q 
Sbjct: 825  EKRLDRLEAMALGPEKEQDAKQIQVDLSQLLISAVQKSRFRERFAHINKQIIDSQKAQQK 884

Query: 773  IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830
            + +K+ L+         +  D +++   +    ++K +   ++ ++ K+Q   + +L   
Sbjct: 885  LESKKALEAITSYFENPENKDKSWLVARLPISANAKAVSESLNHVKSKLQDKTVYVLAAD 944

Query: 831  SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S + +      +++ + D   +A D A + +  +GG  GG  P      G N +K D+AI
Sbjct: 945  SNQGRVVHGCYMSKAISDQGASASDWAAIVSTAVGGKAGGKGPTS-IGNGTNPDKTDEAI 1003

Query: 890  AGVASFLKK 898
            A  + +L K
Sbjct: 1004 ALASDYLSK 1012


>gi|19114552|ref|NP_593640.1| mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|3183171|sp|O13914|SYA_SCHPO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2330773|emb|CAB11162.1| mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 959

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/961 (30%), Positives = 462/961 (48%), Gaps = 89/961 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            + IR TFL++F+ +GH ++PSSS+IP +DPTL+F N+GM  FK IF G   P       
Sbjct: 12  ANEIRRTFLKYFEDHGHTIVPSSSVIPYDDPTLLFANAGMNQFKPIFLGTVDPSSDFAKL 71

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDL++VG+ N HHT FEMLGN+SFG YFK+ AI +AWDLLT  +
Sbjct: 72  KRACDSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIAMAWDLLTNVY 131

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T +        + D EA +LW    G+   ++I  +  DNFW M + GPCG
Sbjct: 132 GLKKDQLYVTYFGGHEESGLEPDLEARQLWLD-IGIDESRVIPGSLKDNFWEMGDQGPCG 190

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           + +    +EIWN+VF+QF ++       LP   +DTGMG 
Sbjct: 191 PCSEIHYDRIGNRT-VPELVNMDDPNVLEIWNIVFIQFNREKDGSLRPLPNRHVDTGMGF 249

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +V+Q KT+NYD D+F  +    +++T  +                 +RV+ DH+R+
Sbjct: 250 ERLVSVIQNKTSNYDTDVFSPIFAKIQELTNARPYTGKMGDEDVDGIDTAYRVVADHVRT 309

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YTEPLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P NEGRGYVLRRI+RR   Y R             L   +  +MG  +PE
Sbjct: 310 LTFAISDGGVPNNEGRGYVLRRILRRGARYVRKKFGVPIGNFFSRLSLTVVEQMGDFFPE 369

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLP 397
           L +    + E L  E+E F +TLDRG  + +     +     + L G+  ++LY+T+G P
Sbjct: 370 LKRKVDDVRELLDEEEESFSRTLDRGEKMFEQYAAAAKKTPSKTLQGNDVWRLYETYGFP 429

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   +    G+  ID   F  A    +  ++  S G  SG    +             
Sbjct: 430 VDLTHLMAEEAGIK-IDEPGFEAAQARSKEISKQASKGGSSGDDLLVL------------ 476

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEVV 514
              D+       K D            +  + S++K I  +G   +  E   SG+++ ++
Sbjct: 477 ---DVHALGALSKMDDIPETDDVFKHNSVSLKSVIKGIYHKGGFQKSTEGFNSGEQLGLL 533

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D+T FYAE GGQ  DTG  + DG+        +   G  +H   +E G L    S+V  
Sbjct: 534 LDRTNFYAEQGGQEYDTGHIVIDGVADFRVTNVQVYAGYVLHTGFLEYGNLTVNDSVVCE 593

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  L  NH+ TH+L+ AL   LG  + Q GS ++ + LRFD ++   I   +L  
Sbjct: 594 YDEIRRWHLMNNHTVTHILNLALRNTLGDGIDQRGSLVSQEKLRFDFSYKSSIPIDKLLL 653

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +E+  N++I  NL V ++ +    A   +G  A+ G  Y D VRVV +            
Sbjct: 654 VENYCNNVIQDNLSVYSKEVALSKAKEINGLRAVFGEVYPDPVRVVCIGVDIDTLLQEPK 713

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------ 736
             D   +S   CGGTH   +GEI    I+ E+ I  GIRRI A+T   A           
Sbjct: 714 KPDWTKYSIEFCGGTHCDKSGEIKDFVILEENGIAKGIRRIVAVTSTEANRVSRLANEFD 773

Query: 737 -------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIH--A 775
                         ++ +LK ++  L       V +  +  R+ +I ++ ++       A
Sbjct: 774 ARIAKLEKMPFSPAKEAELKKISVDLSKLVVAAVRKHAMKERIAKITKQVQEHVKAINAA 833

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           ++K  +NV      +  D++F+   +    + K L   +   +K ++   I L+  S + 
Sbjct: 834 EQKEVVNVVTEYFKENPDMSFVVAKVPISANPKALSFALTYAKKNLKDKSIYLLA-SDDT 892

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K +   +V+ + + +    + ++     + GG  GG+    Q  G      D A+     
Sbjct: 893 KVAHACLVSPEAMKKLTPQEWSQKVCHSI-GGRSGGKGDTCQGVGDKPLSIDVAVEEAIE 951

Query: 895 F 895
           F
Sbjct: 952 F 952


>gi|182415646|ref|YP_001820712.1| alanyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|205830166|sp|B1ZZ40|SYA_OPITP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|177842860|gb|ACB77112.1| alanyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 937

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/972 (31%), Positives = 452/972 (46%), Gaps = 126/972 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
              + IR +FL+FF + GH ++PSSSL+P + P L+FTN+GM  F  IF G   P     
Sbjct: 1   MTSAEIRQSFLDFFARQGHTIVPSSSLLP-DSPGLLFTNAGMNQFVPIFLGDRAPDVSKW 59

Query: 59  --------QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110
                         QKC+RAGGKHNDL++VG    HHT FEMLGN+SFG YFK+ +I   
Sbjct: 60  AGARPAKDTRAADTQKCIRAGGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKESITWG 119

Query: 111 WDLLTKEFDLDQRRLYITVYDE----------DEEAFKLWK---KISGL-SADKIIRITT 156
           W+L+TK + +  +RL+ TVY            D+EA+ +W    K  GL  A  I+    
Sbjct: 120 WELITKVWGIPAKRLFATVYSPDKSKNDPSDFDQEAYDIWAGVFKKEGLDPAVHIVHGNK 179

Query: 157 NDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
            DNFW M +TGPCGPCSEI F+    +    G    +    R IEIWN VF+QF      
Sbjct: 180 KDNFWMMGDTGPCGPCSEIHFNLLPSDDEVEGRKLVNAGVPRCIEIWNHVFIQFNANADG 239

Query: 215 ERFILPKMSIDTGMGLERMATVLQEK---------TNNYDIDLFKHLIQASEQVTGMKY- 264
               L    +DTGMG ER+A +              +NY+ D+F  L    E+++   Y 
Sbjct: 240 TFSPLAAKHVDTGMGFERVAGIYATTKGFKDFSRDPSNYNADVFAPLFAKIEELSKKTYN 299

Query: 265 ------------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                       + N  +  RV+ DH R  S  IAD ILP NEGR YV+RRI+RR + Y 
Sbjct: 300 GTVPTRREGLGEQENIDIAFRVLADHARCVSCAIADNILPGNEGRNYVIRRILRRGILYG 359

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           + L         L+  +   +G+ +PEL + + +I   +RSE+E FG+TL++GL L +  
Sbjct: 360 KKLNLATGFFEQLVAPVVESLGAVFPELKERQDIIRRVIRSEEESFGRTLEKGLQLFNEG 419

Query: 373 LSHLGKDEIL----------------------NGDVAFKLYDTHGLPLDIMQDILCARGL 410
              L     +                       G   F+LYDT+G P+D+ Q +   RGL
Sbjct: 420 AKLLLDAHPIKGQADVPGVGTITNIGGVTRFLGGKFVFRLYDTYGFPVDMTQLLATERGL 479

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           A   +  F   +++Q+ R+RA           +   +  E    T+FIGYD L       
Sbjct: 480 AVNMVE-FASEMQQQQDRSRAAQKKEVIVAATEGDNT--EAAQPTKFIGYDRLTA----- 531

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                        ++++   + + + +VFDQTPFYAE GGQ GD
Sbjct: 532 ---------------------------DAQVLDVVKTDKDLFLVFDQTPFYAEMGGQTGD 564

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG-----ILRTEMSLVLTIDYQNRRQLSI 585
            G    DG    I    K   G F+H            +        L +    RR +S 
Sbjct: 565 HGVVKIDGQTFAILATVKDKAGRFLHKLAPACAADVARLNPVGKKAALGVSPLARRAISR 624

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSA HL+H AL   LG+HV Q G+  T + +RFD TH + +T  ++  +E  VN  I  
Sbjct: 625 HHSAEHLVHWALRKTLGTHVRQAGTSKTKERMRFDFTHFEALTPEQIAEVERLVNSKILS 684

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N  V        D    G  A  G KY   VRVV +       +S  LCGGTHVS+T EI
Sbjct: 685 NDKVEAYETEF-DKKPEGTLAFFGEKYGKIVRVVDIGG-----YSRELCGGTHVSTTSEI 738

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  IV+E +I AG RR+EA+ GQ A   +   +  LK++   L     +V  +++ +  
Sbjct: 739 GLFKIVAEMAIAAGTRRLEAVAGQAAYDFVEEHETALKAVTHKLNAGPQDVAQKLDSLLA 798

Query: 766 EYRKLQLIHA--KRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKI 820
             ++L+      ++K    + D    K      + F++  +S  +   L+S+   +  K+
Sbjct: 799 HQKELEKKLKAYEQKAAAGLADELAAKATARDGLKFVTATVSIDNQDALRSLGSQVLHKL 858

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             G++ L     + +AS+++  +   +     A  +    +  +GG G GG+P  A  GG
Sbjct: 859 GEGVVTLGAALGD-RASLVVYCSPAAIKAGHQAGKIVGELSTKIGGKG-GGKPDFAMGGG 916

Query: 880 PNGNKADQAIAG 891
            + +K    +  
Sbjct: 917 KDPSKLADVLKQ 928


>gi|255713044|ref|XP_002552804.1| KLTH0D01848p [Lachancea thermotolerans]
 gi|238934184|emb|CAR22366.1| KLTH0D01848p [Lachancea thermotolerans]
          Length = 955

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/964 (30%), Positives = 466/964 (48%), Gaps = 92/964 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S++R+TF+EFF++  H  + SS +IP +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TASNVRSTFMEFFKQREHTFVASSPVIPYDDPTLLFANAGMNQYKPIFLGTVDPSSDYYS 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK 
Sbjct: 70  LKRAMNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKDAIQYSWELLTKV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY+T ++ D+        EAF+LWK   G+S D I+     DNFW M + GPC
Sbjct: 130 YGIPSERLYVTYFEGDQKQGLEPDLEAFELWKS-VGVSEDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WN+VF+Q+ ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPNVLEVWNIVFIQYNREQNGTLKSLPSKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F+ L    +++TG +                 +RV+ DH+R
Sbjct: 248 FERLVSVLQDVKSNYDTDVFQPLFARIQEITGARPYEGKFGAEDADGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L  +  + +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSSLAPTLIDQSKAMFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           E+ +    + E L  E+  F KTLDRG  L +       +  D+ L+G   ++LYDT+G 
Sbjct: 368 EINRDPSYLFEILDEEEASFAKTLDRGEKLFEKYAQAAAQTKDKTLDGLQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L        
Sbjct: 428 PVDLTELMAEEKGLK-IDGPGFEKAKQESYEASKKGGKKSASDLIKLEVHEL-------- 478

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                       +  +        P   +  + +IV  I      V+E    G++  V+ 
Sbjct: 479 ----------STLNSENVPKTDDSPKYESANIEAIVLRIFDGENFVDEISEVGKQYGVIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D T FYAE GGQ  D G  + D +     +  +   G   H   +  G L     ++ + 
Sbjct: 529 DSTCFYAEQGGQEYDMGTLVIDDVAEFSVENVQLYNGYVFHTGQLGEGKLSVGDKVIASF 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL  +LG+ V Q GS + P+ LRFD +H K +   ELK +
Sbjct: 589 DELRRFPIKNNHTGTHILNFALKEVLGNDVDQKGSLVAPEKLRFDFSHKKAVALDELKEV 648

Query: 636 EDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E   N+ I  NLPV  + +        S   A+ G  Y D VRVVSV             
Sbjct: 649 ERICNEQIKANLPVYYKNVPLDLARKISSVRAVFGETYPDPVRVVSVGKPVDDMLVDPTS 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG------ 737
           E+   +S   CGGTHVS TG+I    I+ ES I  G RRI A++G  A            
Sbjct: 709 EEWQKYSVEFCGGTHVSKTGDIKEFVIIEESGIAKGTRRIVAVSGSEAYEVQRIANKFDS 768

Query: 738 -------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                        +++KLK L   L       V++  +  +  +I +  +      AK++
Sbjct: 769 DLIAAEKMPFSPLKEKKLKELGVALGQLSISVVTKQELKDKFAKIEKVVKDEIKTRAKKE 828

Query: 779 LQLNVEDLS--CHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           ++  V+++     +  + +F+   I+   ++K +   ++ ++   +   I L     + +
Sbjct: 829 IKQTVDEVKNYFAENQEASFLVKYINIPTNAKAITEAVNHMKTSAKDKSIYLFT--GDDR 886

Query: 836 ASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +    +++  L    +   L    +  + GG  GG+ ++ Q  G      + A+  V +
Sbjct: 887 VAHGCYISDVALEKGIDGRALLNTVSSNI-GGKAGGKGNVFQGVGDKPEGIETAVKEVEN 945

Query: 895 FLKK 898
             ++
Sbjct: 946 LFRE 949


>gi|291229512|ref|XP_002734712.1| PREDICTED: alanyl-tRNA synthetase-like [Saccoglossus kowalevskii]
          Length = 974

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/976 (30%), Positives = 468/976 (47%), Gaps = 98/976 (10%)

Query: 7   IRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
           IR  F++FF+      HE +PS+S++P +DPTL+FTN+GM  FK IF G   P      +
Sbjct: 8   IRQGFIDFFRNKKGLEHEFVPSNSVVPLDDPTLLFTNAGMNQFKPIFQGVVDPNSDMAKW 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+   ++AW+LLT  +
Sbjct: 68  VRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCEMAWELLTDVW 127

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T +          DEE  ++W    GL  ++++  +  DNFW M + GPCG
Sbjct: 128 KLPKERLYVTYFGGDEKMGLGPDEECKQIWID-IGLPPERVLPFSMRDNFWEMGDVGPCG 186

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI FD+           + +    +E+WNLVFMQF ++       LPK +ID GMGL
Sbjct: 187 PCSEIHFDRI-GGRDATHLVNMDDPNVLELWNLVFMQFNREPDGSIRPLPKKNIDCGMGL 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F     A  + TG++               + +RV+ DH+R+
Sbjct: 246 ERVISVLQGKMSNYDTDIFTPFFDAIHKGTGVREYQGKVGSEDTDGIDMAYRVVADHIRT 305

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  I+DG  P N GRGYVLRR++RR + YA   L         L+  +   +G A+P +
Sbjct: 306 LTIAISDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAPSGFFASLVQVVLDTLGDAFPGI 365

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   L+ + +  E+ +F KTL+RG  +L   ++ L   ++L G  A+ LYDT+G P+D+
Sbjct: 366 KKDPQLVIDIINEEEAQFLKTLNRGHRVLQRTINKLE-TKVLPGKAAWLLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL--KEKYGATQFI 458
            Q +    GL         +  ++ R      S G GSG  + I   +    +   T+ +
Sbjct: 425 TQLMAEENGLNIDMGEYEEEKKKKLR---FLLSQGKGSGVDDTIGLDVHAISELQDTRKV 481

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                  +    +      ++    + N + + V A+ +  + V E  +G +  ++ D+T
Sbjct: 482 -----SATDDSPKYSYTYDEQNSKYVFNAIVATVIALRKDKQFVSEVDNGDECGMLLDKT 536

Query: 519 PFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVH---HAIVERGILRTEMSLV 572
            FYAE GGQ+ D G         I  ++T+VQ K   I       A+   G L+    + 
Sbjct: 537 CFYAEQGGQIWDEGFMEKENNPDIEFKVTNVQVKGGYILHIGKLSAVDSEGKLKVGDKMK 596

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID   RR +  NH+ TH+L++AL  +LG    Q GS + PD LRFD T    +T+ ++
Sbjct: 597 LYIDEARRRPIMSNHTGTHMLNYALRKVLG-EADQKGSLVAPDKLRFDFTAKGAMTTEQV 655

Query: 633 KSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           +S E   N+++ ++ PV  +           G  A+    Y D VRV+S+          
Sbjct: 656 QSAEQITNEMVQKSQPVYAKNSPLAVAKAIQGLRAVFDEVYPDPVRVISIGIPVEDMEAD 715

Query: 683 --YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ-- 738
                G   S   CGGTH+ ++G I    IV+E +I  GIRRI AITG  A+  +     
Sbjct: 716 PSGPAGATTSIEFCGGTHLLNSGHIGPFVIVTEEAIAKGIRRIVAITGDDAQKAINRADM 775

Query: 739 -DEKLKSLASFLKVS-------QGNVVGRV---------------------------EEI 763
            +E++  L   +K +          +   +                           ++I
Sbjct: 776 LEEEIDKLTQKIKDNSTKQVYMPKELSKEIVSIGDDLNVAIVPQWRKDGMRKKLKDLKKI 835

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            ++  K +     + ++   + L   K      +  + ++ +SK L + +   +      
Sbjct: 836 MDDLDKARKAAIIQNVKEMTKKLIEEKPNQPLVVMTLDADSNSKALDAALKEYRNLSPQT 895

Query: 824 IIMLVGISKEK-KASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ML  + +E  K   L  V  E +     A +  R  +  L  G GGG+   AQ+ G N
Sbjct: 896 AAMLFSVDRENRKIICLCHVPQEGIAKGLKAGEWVRHVSSSLN-GKGGGKDSSAQASGDN 954

Query: 882 GNKADQAIAGVASFLK 897
            N  D+A      F +
Sbjct: 955 INGLDEASKLAKEFAE 970


>gi|298253344|ref|ZP_06977136.1| alanyl-tRNA synthetase [Gardnerella vaginalis 5-1]
 gi|297532739|gb|EFH71625.1| alanyl-tRNA synthetase [Gardnerella vaginalis 5-1]
          Length = 894

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/928 (33%), Positives = 487/928 (52%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F KNGH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTSPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  ++  N + +        L + +IDTG GL
Sbjct: 175 VDRGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G+KY  NN  +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG  +P++  L P   + M  +YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKSAMEPSYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDI 404
           E    E++ F +TL++G  +LD  +    K+     I+ G  AF L+DT+G P+++  ++
Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDFAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLL 463
              +G+  +D   F + + EQ+ RARA +L         ++  +K+       F+GY   
Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKALEKPIDFLGYTDF 472

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522
                                     S V AIV+ G+  V+   +   VE++ D+TPFYA
Sbjct: 473 SSR-----------------------SNVLAIVEAGKGSVKSVSAPANVEIILDRTPFYA 509

Query: 523 EAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ+ D G  I D   + ++ DVQ+  + + VH   +  G L     +   ID   R 
Sbjct: 510 ERGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRA 569

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L+ +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+
Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNE 629

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +L VV + M  +DA   GA  L G KY D VRVV +        S  LCGGTH  S
Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEIGD----GWSRELCGGTHAKS 685

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +V R+E
Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELVERLE 745

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIAD----VNFMSHIISEVDS-KELKSVMD 814
            +  + +      A        E +     ++ +    V      +    S   L+  + 
Sbjct: 746 SLLNKMKDSDRKLASVYEAQLNEAVPTLVDEVKNSNEKVKLALKNVGNFGSFDALRKTVL 805

Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            ++ ++      ++ L G++++ +  + +   E        A DL R ++KVLGGGG GG
Sbjct: 806 DIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGLGAKAGDLVRTASKVLGGGG-GG 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +P  AQ GG + +K D+A+    S + K
Sbjct: 865 KPDFAQGGGTDASKLDEALEAAKSEVAK 892


>gi|332194404|gb|AEE32525.1| Alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 963

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/964 (31%), Positives = 459/964 (47%), Gaps = 97/964 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P          
Sbjct: 16  VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L 
Sbjct: 76  CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLP 135

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCGPC+
Sbjct: 136 TDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPCT 193

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG ER+
Sbjct: 194 EIHYDRIGNRD-AASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERL 252

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+ SF
Sbjct: 253 TSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSF 312

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL + 
Sbjct: 313 AIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEH 372

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  I + ++ E+  F KTL +G+           +   L+GD AF L+DT+G PLD+ Q 
Sbjct: 373 EKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDLTQL 431

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   RGL  +D+  FN+A+EE R R+R+       G                     D  
Sbjct: 432 MAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIVM-----------------DAD 473

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S   K                   S +KAI      +E + +   V +V   T FYAE
Sbjct: 474 ATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAE 533

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQ+ DTG   G      + +VQ      + + +   E G +     ++  +DY+ R+ 
Sbjct: 534 QGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKL 593

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  VN  
Sbjct: 594 IAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQ 653

Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690
           I   L V ++     +A    G  A+ G  Y D VRVVS+              +  + S
Sbjct: 654 IKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLS 713

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---- 746
           S  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L       + +     
Sbjct: 714 SEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASR 773

Query: 747 ----------SFLKVSQG----------NVVGRVEEIW--------EEYRKLQLIHAKRK 778
                     S LK              ++  ++  +          E RK Q   A++ 
Sbjct: 774 AEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQVISSFSLTNEVRKAQKKIAEQN 833

Query: 779 LQLNVE----DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           L+ +V+               F    +   +D+  ++  +  + +K    I++       
Sbjct: 834 LKKSVKLATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDEST 893

Query: 834 KKASVLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            KA V   V E  D     +  +    +   L G  G G+  +A   G + ++   A+  
Sbjct: 894 NKAVVCAGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDM 953

Query: 892 VASF 895
            +SF
Sbjct: 954 ASSF 957


>gi|156371401|ref|XP_001628752.1| predicted protein [Nematostella vectensis]
 gi|156215737|gb|EDO36689.1| predicted protein [Nematostella vectensis]
          Length = 961

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/970 (30%), Positives = 463/970 (47%), Gaps = 94/970 (9%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
               IR  F++FF +K+ H  +PSSS+IP  DPTL+F N+GM  +K+IF G   P     
Sbjct: 6   TAKDIRRKFIDFFVEKHNHTFVPSSSVIPHEDPTLLFANAGMNQYKSIFLGTVDPNSDMS 65

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG +FK+ AI  AW+ LT+
Sbjct: 66  KLKRAVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDFFKKGAIDFAWEFLTE 125

Query: 117 EFDLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
              + + RLY+T +      + D E    W    GL   +++    +DNFW M +TGPCG
Sbjct: 126 VLKVPKERLYVTYFGGCDGVECDNETKDYWIGK-GLDPSRVLPFGMSDNFWEMGDTGPCG 184

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           + +    +EIWNLVF+QF ++N      LP   +DTGMGL
Sbjct: 185 PCSEIHYDRIGGRDAKA-LVNMDDPTVLEIWNLVFIQFNRENDGTLKTLPSQHVDTGMGL 243

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +++Q K +NYD DLF        Q TG++  G            + +RV+ DH+R+
Sbjct: 244 ERLVSIIQGKMSNYDTDLFTPFFDKIHQATGVQPYGGQVGLADQNGIDMAYRVVADHIRT 303

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  ++DG  P N GRGYVLRRI+RR + Y+   L  +      L+  +   +G  +PEL
Sbjct: 304 LTVAMSDGGKPDNVGRGYVLRRILRRCIRYSIEKLNASPGFTASLVSVVIDTLGEFFPEL 363

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +    + + +  E+ +F KTL RG  L +   S +  D  + GDVA++LYDT+G P+D+
Sbjct: 364 NKDPQQVMDVINEEEVQFLKTLARGRRLFERTASKIT-DGTIPGDVAWRLYDTYGFPVDL 422

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   RGL               + RA+  + G  S + + I   +            
Sbjct: 423 TELMAEERGLRVDMEKYEEA-----KRRAQEIARGKDSASDDAITLDVHLL--------- 468

Query: 461 DLLRG-----SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           D L+                        +   VS  +KA++ + E V E   G+   ++ 
Sbjct: 469 DKLQNVMNLPPTIDLPKYSYSSDALGSYVFQPVSGTIKALLHEKEFVNEVPGGEHCGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           DQT FYAE GGQ+ D G    +    ++   +  +  G +V H     G +R   ++   
Sbjct: 529 DQTSFYAEQGGQIYDEGFMTKEGDEDVEFRVINVQVHGGYVLHVGALEGAIRVGDTMNCL 588

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID   RRQ   NH+ATH+L+ AL   LG    Q GS + P+ LRFD T    +T  ++KS
Sbjct: 589 IDEDRRRQCMNNHTATHILNFALRRTLG-EADQRGSLVAPNRLRFDFTAKGAMTPEQVKS 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------YE 684
            E    +I+  +LPV  + +    A    G  A+    Y D VRVVS+           +
Sbjct: 648 TELFSKEIVTSDLPVFAKEVALAQAKDVQGLRAIFDEVYPDPVRVVSIGASFDELQPNPQ 707

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR---ARSHLMGQDEK 741
            G  +S   CGGTH+  +  +    +VSE +I  GIRRI A+TG     A  H    + +
Sbjct: 708 AGYKYSIEFCGGTHLQRSSHMETFVLVSEEAISKGIRRIVALTGPEGLKAEKHCEALEAR 767

Query: 742 LKSLASFLKVSQGNVVGR-----VEEIWEE-----------------YRKLQLI--HAKR 777
           ++ +   ++    N+  +     +  + E+                  +K++ I  +A +
Sbjct: 768 VEKIRKEVEAESKNLRVKEAGQEITRLIEDINAAVISAWKKEEMRQTLKKVKKIVDNASK 827

Query: 778 KLQLNVEDLSCHKIA-------DVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVG 829
            +Q  +   +  K         D   +  +     + K L + M   +       ++L+ 
Sbjct: 828 AMQAALMTSAADKAKAMITAEPDRTVVVELFDAGSNQKVLDAAMKQFKNLSPLTAVLLLS 887

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + +E KK   L  V +D+  +   A +     A +L GG  GG+   AQ+ GPN    D+
Sbjct: 888 VDQENKKIICLSQVPKDVTKKGLKADEWTGAIADIL-GGKSGGKEMSAQASGPNVGSIDK 946

Query: 888 AIAGVASFLK 897
           A++    F  
Sbjct: 947 ALSEAKQFAN 956


>gi|297242856|ref|ZP_06926794.1| alanyl-tRNA synthetase [Gardnerella vaginalis AMD]
 gi|296889067|gb|EFH27801.1| alanyl-tRNA synthetase [Gardnerella vaginalis AMD]
          Length = 894

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/928 (33%), Positives = 484/928 (52%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F KNGH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTSPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  ++  N + +        L + +IDTG GL
Sbjct: 175 VDRGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G+KY  NN  +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG  +P++  L P     M  +YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDI 404
           E    E++ F +TL++G  +LD  +    K+     ++ G  AF L+DT+G P+++  ++
Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPMVGGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLL 463
              +G+  +D   F + + EQ+ RARA +L         ++  +K+       F+GY   
Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKSLEKPIDFLGYTDF 472

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522
                                     S V AIV+ G+  V+   +   VEV+ D+TPFYA
Sbjct: 473 SSR-----------------------SNVLAIVEAGKGSVKSVTAPANVEVILDRTPFYA 509

Query: 523 EAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ+ D G  I D   + ++ DVQ+  + + VH   +  G L     +   ID   R 
Sbjct: 510 ERGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGSPVNTNIDQVRRA 569

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L+ +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+
Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNE 629

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +L VV + M  +DA   GA  L G KY D VRVV +        S  LCGGTH  S
Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEIGD----GWSRELCGGTHAKS 685

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +  R+E
Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELAERLE 745

Query: 762 EIWEEYRKLQLIHAKRKLQLNVE------DLSCHKIADVNFMSHIISEVDS-KELKSVMD 814
            +  + +      A        E      D + +    V      +    S   L+  + 
Sbjct: 746 SLLNKMKDSDRKLASVYEAQLNEAVPTLVDEAKNSNEKVKLALKNVGNFGSFDALRKTVL 805

Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            ++ ++      ++ L G++++ +  + +   E        A DL R ++KVLGGGG GG
Sbjct: 806 DIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGFGAKAGDLVRTASKVLGGGG-GG 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +P  AQ GG + +K D+A+    S + K
Sbjct: 865 KPDFAQGGGTDASKIDEALEAAKSEVAK 892


>gi|283782871|ref|YP_003373625.1| alanine--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|283441998|gb|ADB14464.1| alanine--tRNA ligase [Gardnerella vaginalis 409-05]
          Length = 894

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/928 (33%), Positives = 487/928 (52%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F KNGH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  ++  N + +        L + +IDTG GL
Sbjct: 175 VDRGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G+KY  NN  +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG  +P++  L P   T M  +YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKTAMEPSYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDI 404
           E    E++ F +TL++G  +LD  +    K+     ++ G  AF L+DT+G P+++  ++
Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPMVGGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLL 463
              +G+  +D   F + + EQ+ RARA +L         ++  +K+       F+GY   
Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKALEKPIDFLGYTDF 472

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522
                                     S V AIV+ G+  V+   +   VE++ D+TPFYA
Sbjct: 473 SSR-----------------------SNVLAIVEAGKGSVKSVTAPANVEIILDRTPFYA 509

Query: 523 EAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ+ D G  I D   + ++ DVQ+  + + VH   +  G L     +   ID   R 
Sbjct: 510 ERGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRA 569

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L+ +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+
Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNE 629

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +L VV + M  +DA   GA  L G KY D VRVV +        S  LCGGTH  S
Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEIGD----GWSRELCGGTHAKS 685

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +V R+E
Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELVERLE 745

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIAD----VNFMSHIISEVDS-KELKSVMD 814
            +  + +      A        E +     ++ +    V      +    S   L+  + 
Sbjct: 746 SLLNKMKDSDRKLASVYEAQLNEAVPTLVDEVKNSNEKVKLALKNVGNFGSFDALRKTVL 805

Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            ++ ++      ++ L G++++ +  + +   E        A DL R ++KVLGGGG GG
Sbjct: 806 DIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGLGAKAGDLVRTASKVLGGGG-GG 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +P  AQ GG + +K D+A+    S + K
Sbjct: 865 KPDFAQGGGTDASKLDEALEAAKSEVAK 892


>gi|283769383|ref|ZP_06342282.1| alanine--tRNA ligase [Bulleidia extructa W1219]
 gi|283104040|gb|EFC05424.1| alanine--tRNA ligase [Bulleidia extructa W1219]
          Length = 875

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/916 (34%), Positives = 490/916 (53%), Gaps = 63/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     +  R  FL+FF   G  + P +SL+P +DPTL++ N+G+   K  F G++KP+ 
Sbjct: 3   MKKITGNETRQLFLDFFASKGCMIEPGASLVPHDDPTLLWINAGVAALKPYFDGRKKPIS 62

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 63  HRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKVEAITWAWEFLTSKK 118

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               +  RLY+TVY +D+EA   W K  G+    I +  T DNFW +   GP GP +E++
Sbjct: 119 YIGFEPERLYVTVYPDDQEAIDTWIK-VGMIPSHIRK--TEDNFWEIGR-GPGGPDTELY 174

Query: 177 FDQGECIPG-----GLPGSSEEGERYIEIWNLVFMQFEQQNKQ----ERFILPKMSIDTG 227
           +D+GE          L     E +RYIE+WN+VF Q++    +    E   LP+ +IDTG
Sbjct: 175 YDRGEKYDPQGKGEELFFQDLENDRYIEVWNIVFSQYDCHPGEMPRSEYPELPQKNIDTG 234

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLI 286
           MGLER+  ++Q+   N+D DLF  +I A+E++  + Y+     + +RVI DH+R+ +F I
Sbjct: 235 MGLERLVALIQDGQTNFDTDLFLPIIHATEKLASVSYQEEKAKMAYRVIADHIRTVTFAI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG + +NEGRGY+LRR++RRA+ +   +G  +  M  L+  +   M + YP +++   L
Sbjct: 295 ADGAMFSNEGRGYILRRVLRRAVRFGLKIGIEKAFMYQLVEVVARNMEAYYPYVVEKIDL 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           I   ++ E+E F +TL  G  LL   +     ++ L G+V F+LYDT+G P ++ ++I  
Sbjct: 355 IARLVKVEEESFHRTLSMGENLLQSAMEQYQSEKKLPGEVVFRLYDTYGFPFELTKEISF 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G   +D   F   +E+Q+ RAR     + S   +     L      + F+GY      
Sbjct: 415 EAGYE-VDEEGFKAQMEDQKKRARQARGEIQSMRGQS--EDLLNFQTESHFVGY------ 465

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                            + + V+S + A+ + GE +   +   + +VV  +T FYAE+GG
Sbjct: 466 -----------------VQSEVTSKITALFRNGERISSLLG--EGDVVLAETVFYAESGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  DTG       ++ ++DVQK   G F+HH   +   L+  M +    D + R     N
Sbjct: 507 QCADTGILWLGDHKIYVSDVQKSPNGQFLHHVNSDV-ELKEGMEVKGCFDVKKRELTRAN 565

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ HLL  AL  +LG HV+Q GS   PD  RFD  H + ++  +L+ +E+ VN+ I  +
Sbjct: 566 HSSLHLLQAALKKVLGDHVAQAGSYNCPDYARFDFNHFEKMSEEQLREVENLVNEKIMAH 625

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T I+  E+A  SGA AL   KY D VR+V++     G  S   CGGTHVS+T E+ 
Sbjct: 626 IPVTTEILPIEEAKKSGATALFDEKYGDFVRIVTM-----GDFSKEFCGGTHVSNTSELG 680

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWE 765
           L +I SE S+ +GIRRI + T + A  H    ++ LK  AS  K+ + N +  R++ + E
Sbjct: 681 LFHIESEESVGSGIRRITSTTKKVALRHFKEMEDYLKESASLFKLKKWNALQDRIQMVLE 740

Query: 766 EYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E   L     +L   K K++         +I  +N +   + + D+  LK     L+ K+
Sbjct: 741 ENMALQHQIKELKDEKMKMESEAVLAKKEEIHGLNVLILELHDQDNAGLKDYAVLLRNKL 800

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + G ++L  ++K+K   V     E +    NA  + +  A+ L GG GGG+P +AQSGG 
Sbjct: 801 ERGFVLLANVTKDKVVYVAAASQEAIAAGVNAGHIVKKVAQ-LTGGHGGGKPDLAQSGGK 859

Query: 881 NGNKADQAIAGVASFL 896
             ++   A+  V   L
Sbjct: 860 EVDQVKFALESVRKSL 875


>gi|170092939|ref|XP_001877691.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647550|gb|EDR11794.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 955

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/967 (31%), Positives = 465/967 (48%), Gaps = 95/967 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           + + +R  F  FF+   H  +PSS  IP +DPTL+F N+GM  +K+IF G   P      
Sbjct: 11  SSARVREEFFNFFRSKNHTFVPSSPTIPFDDPTLLFANAGMNQYKSIFLGTVDPNSDMSR 70

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLT  
Sbjct: 71  LKRAFNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTDV 130

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T ++ D         EA + W    G+  D I+     DNFW M  TGPC
Sbjct: 131 YKLPKDRLYVTYFEGDPNNGLEPDLEAKQYWLDQ-GVDEDHILPGNAKDNFWEMGATGPC 189

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI FD+           +++    +EIWN VF+QF +++      LP   +DTGMG
Sbjct: 190 GPCTEIHFDRV-GGRNAAHLVNQDDPDVLEIWNNVFIQFNREDNGSLKPLPSKHVDTGMG 248

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +++Q+K +NYD D+F  +     ++TG++                 +RV+ DH+R
Sbjct: 249 FERLVSIVQDKRSNYDTDVFLPIFDKIRELTGVRPYEGRFDADDVDGIDTAYRVVADHIR 308

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAYP 338
           + +F ++DG +P N GRGYVLRRI+RR   YAR  LG         LLP +   MG+ +P
Sbjct: 309 TLTFALSDGGIPNNVGRGYVLRRILRRGARYARKKLGVKIGCFFSSLLPVVVETMGAVFP 368

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396
           E+ +    I+E L  E+E F +TLDRG  L D   +   +  +  LNG   ++LYDT G 
Sbjct: 369 EITRKVDDIKEILDEEEESFSRTLDRGEKLFDQFATRAKEQGLKELNGRDVWRLYDTFGF 428

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL   D   F +A    +  ++A S  +G+   +            T 
Sbjct: 429 PVDLTRLMAEELGLGVNDQE-FEEAQAWSKEASKASSKQVGTSIVKLDVHDTAALEKDTD 487

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEV 513
                                          + ++VKAI  +    +  +    G    +
Sbjct: 488 -----------------IPKTDDSAKFNLGNIRALVKAIFYEKSFPQSTDIMPEGATFGI 530

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T FYAEAGGQ  DTG  + DG+        +   G  +H   ++ G L     ++ 
Sbjct: 531 ILDKTSFYAEAGGQEYDTGNIVIDGVADFEVTNVQSYNGYVLHTGHLKYGQLAVGKEVIS 590

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           + D   R  L  NH+ATH+L+  L  +LG H+ Q GS + P  LRFD +H   I+ +EL 
Sbjct: 591 SYDELRRWPLRNNHTATHILNFCLREVLGDHIDQKGSLVAPTKLRFDFSHKAQISHSELS 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVS-----------V 681
            IE    D I +N+ V ++ +  E A    G  A+ G  Y D VRVV+           +
Sbjct: 651 RIEATSVDWIKRNVKVFSKDLELETASKIPGLRAVFGESYPDPVRVVTLEYDVDEIAKDI 710

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736
           E       S   CGGTHV+ TG+I    I  ES I  GIRRI AITG  A S        
Sbjct: 711 ENPKWRRTSVEFCGGTHVARTGDIKDFIITEESGIAKGIRRIVAITGHEAHSAARHALLL 770

Query: 737 -------------GQDEKLKSLASFLKVSQGNVVGRVE----------EIWEEYRKLQLI 773
                         +D  LK+L+  L  +  +V+ + E           + ++ ++ + +
Sbjct: 771 QGRLEQIDSLTGKNKDAALKALSIELGQADISVLKKAELRDRLAVIRKAVDKQVKEREAV 830

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             +  +       + ++ A+    S  +   ++K L++V+   + K+Q   + L  +  E
Sbjct: 831 VNREAIDTIQRHFNDNEKAETYIASLNVDG-NAKILQAVISQGR-KLQKA-VYLFSVDPE 887

Query: 834 KK-ASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
               + +  V  +      +A   A     +L GG  GG+   AQ  G +G++ D+A+  
Sbjct: 888 SNTVAHVNYVPPEFKTKGADARTWASKVVGIL-GGKAGGKEDSAQGVGSDGHRLDEALVA 946

Query: 892 VASFLKK 898
              ++ +
Sbjct: 947 AQLYVDE 953


>gi|298346853|ref|YP_003719540.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 43063]
 gi|298236914|gb|ADI68046.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 43063]
          Length = 895

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/926 (33%), Positives = 481/926 (51%), Gaps = 66/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF KNGHE+ PS  LI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEVRQRWLDFFAKNGHEVRPSVPLISP-DPSILFTIAGMVPFIPYIVGTEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L++T++++DE A+ +W +  GL    + ++   + FW   + GP GPC+EI 
Sbjct: 116 GYGLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMG 229
            D+G    P G P    +G+RY+E+WNLVF +F +  +      P      + +IDTG+G
Sbjct: 176 LDRGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLR-GEGTGKDYPLLGKLDQTAIDTGLG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLI 286
           LER+A VLQ K N Y+ID    +I A++ ++G +Y  +      + R++ DH+RSS  LI
Sbjct: 235 LERLAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P+NEGRGYVLRR+MRRA+   RLLG +E +M  LLPA    M ++YPEL +    
Sbjct: 295 GDGVRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDT 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDIL 405
           I E   +E++ F +TLD G V+LD  ++   +    L+GD AF+L+DT+G PL +  +I 
Sbjct: 355 ISEVAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYD 461
              G+  +D   F + + EQ+ RARA ++   +G  +  ++  L  K G     +F+GY 
Sbjct: 415 AEAGVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGYT 473

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                       + V  I+Q G+ V  A +   +EV+ D+TPFY
Sbjct: 474 ETSAP-----------------------ARVVGILQDGKPVPVATAPATIEVLLDRTPFY 510

Query: 522 AEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AEAGGQL D G      G  L + DVQ   +G+ +H   +  G +        TID + R
Sbjct: 511 AEAGGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERR 570

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
             ++  H++TH++H  L   LG   +Q GS   P  +RFD  ++K +  + +  IE   N
Sbjct: 571 GAIARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEAN 630

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           + +  N+ V    M  E+A  +GA A+ G KY   VR+V +        S   CGGTHV 
Sbjct: 631 ERVQTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSREFCGGTHVP 686

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG I  + ++ ESSI +G+RRIEA+ G  A      +   +  +   +      +V R+
Sbjct: 687 LTGHIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERI 746

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
             + +  +  +    K +L   + +L     S   +  V  +  +       +L+     
Sbjct: 747 TSLMDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQVAPAGSVDDLRQAATT 806

Query: 816 LQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
           L+ +  +    ++ L  +    K  +++ V E   ++   A  L +  A  +GGGG GG+
Sbjct: 807 LRARFSNANPAVVALAAV-IGGKPMLVVAVNEAAREKGVKAGALVKAGAAAMGGGG-GGK 864

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLK 897
             +AQ GG    K +  +  +   L+
Sbjct: 865 DDLAQGGGALAGKPETGLNALVDTLR 890


>gi|315656689|ref|ZP_07909576.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492644|gb|EFU82248.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 895

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/931 (33%), Positives = 481/931 (51%), Gaps = 70/931 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF KNGHE+ PS  LI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEVRQRWLDFFAKNGHEVRPSVPLISP-DPSILFTIAGMVPFIPYIVGTEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L++T++++DE A+ +W +  GL    + ++   + FW   + GP GPC+EI 
Sbjct: 116 GYGLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMG 229
            D+G    P G P    +G+RY+E+WNLVF +F +  +      P      + +IDTG+G
Sbjct: 176 LDRGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLR-GEGTGKDYPLLGKLDQTAIDTGLG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLI 286
           LER+A VLQ K N Y+ID    +I A++ ++G +Y  +      + R++ DH+RSS  LI
Sbjct: 235 LERLAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P+NEGRGYVLRR+MRRA+   RLLG +E +M  LLPA    M ++YPEL +    
Sbjct: 295 GDGVRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDT 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDIL 405
           I E   +E++ F +TLD G V+LD  ++   +    L+GD AF+L+DT+G PL +  +I 
Sbjct: 355 ISEVAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYD 461
              G+  +D   F + + EQ+ RARA ++   +G  +  ++  L  K G     +F+GY 
Sbjct: 415 AEAGVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGYT 473

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                       + V  I+Q G+ V  A +   +EV+ D+TPFY
Sbjct: 474 ETSAP-----------------------ARVVGILQDGKPVPVATAPATIEVLLDRTPFY 510

Query: 522 AEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AEAGGQL D G      G  L + DVQ   +G+ +H   +  G +        TID + R
Sbjct: 511 AEAGGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERR 570

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
             ++  H++TH++H  L   LG   +Q GS   P  +RFD  ++K +  + +  IE   N
Sbjct: 571 GAIARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEAN 630

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           + +  N+ V    M  E+A  +GA A+ G KY   VR+V +        S   CGGTHV 
Sbjct: 631 ERVQTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSREFCGGTHVP 686

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG I  + ++ ESSI +G+RRIEA+ G  A      +   +  +   +      +V R+
Sbjct: 687 LTGHIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERI 746

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
             + +  +  +    K +L   + +L     S   +  V  +  +       +L+     
Sbjct: 747 TSLMDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQVAPAGSVDDLRQAATT 806

Query: 816 LQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
           L+ +  +    ++ L  +    K  +++ V E   ++   A  L +  A  +GGGG GG+
Sbjct: 807 LRARFSNANPAVVALAAV-IGGKPMLVVAVNEAAREKGVKAGALVKAGAAAMGGGG-GGK 864

Query: 872 PHMAQSG----GPNGNKADQAIAGVASFLKK 898
             +AQ G    G      +  +  + + L K
Sbjct: 865 DDLAQGGGAPTGKPETGLNALVDTLRTILTK 895


>gi|242085328|ref|XP_002443089.1| hypothetical protein SORBIDRAFT_08g008230 [Sorghum bicolor]
 gi|241943782|gb|EES16927.1| hypothetical protein SORBIDRAFT_08g008230 [Sorghum bicolor]
          Length = 1006

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/963 (31%), Positives = 451/963 (46%), Gaps = 92/963 (9%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
                +R  ++ FF    H   PSS ++P +DPTL+F N+GM  +K +F G   P      
Sbjct: 60   TARRVREQYISFFVSKEHTRWPSSPVVPVDDPTLLFANAGMNQYKPVFLGTAAPDSPLGR 119

Query: 60   --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ 
Sbjct: 120  LRRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTQV 179

Query: 118  FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + L   R+Y T +  DE        E+  +W K   L  +K++   + DNFW M +TGPC
Sbjct: 180  YKLPTDRVYATYFGGDEKSGLAADVESKNIWLKY--LPKEKVLPFGSKDNFWEMGDTGPC 237

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPC+EI FD+           + +    IEIWNLVF+QF ++       LP   +DTGMG
Sbjct: 238  GPCTEIHFDRIGNRD-AASLVNNDDPTCIEIWNLVFIQFNREADGSLRPLPAKHVDTGMG 296

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQV-----------TGMKYEGNNIVNHRVIVDH 278
             ER+ ++LQ K +NYD D+F  +  A  Q+            G    G   + +RV+ DH
Sbjct: 297  FERLTSILQNKMSNYDTDVFMPIFDAIHQLAGDGIQPYSGKVGSDDIGKVDMAYRVVADH 356

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
            +R+ SF IADG  P NEGR YVLRRI+RRA+ +    L   +     L+      MG  +
Sbjct: 357  IRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVNVFVQLMGDVF 416

Query: 338  PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395
            PEL   +  I++ +R E+E F  TL +G          +  +   +L+G  AF L+DT+G
Sbjct: 417  PELKDNEKKIKDIIRDEEESFENTLAKGYEKFKKAADAVKDNGGTVLSGQDAFVLWDTYG 476

Query: 396  LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
             P+D+ + +    GL  +D   FN ++EE R +AR      G  +               
Sbjct: 477  YPIDLTEVMAIDYGLT-VDKEGFNASMEEARQKARNARNKSGGKSIAL------------ 523

Query: 456  QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
                 D    +   K+        P         S+VKAI    E +  A   +   +V 
Sbjct: 524  -----DANATAHLRKQGLASTDDNPKFLWPKEHESVVKAIYTGSEYITTATGDEDFGLVL 578

Query: 516  DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR--TEMSLVL 573
            + T FYAE GGQ+ DTG   G      + +VQ  A    +H     +G        S++ 
Sbjct: 579  ESTSFYAEQGGQIFDTGSIEGSFGTFNVNNVQVFAGY-VLHIGSFAKGSKVLSLGDSVIC 637

Query: 574  TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             +DY  R  ++ NH+ TH+L+ AL  +LG HV Q GS + P+ LRFD +H KP+   +L+
Sbjct: 638  KVDYNRRTLIAPNHTCTHMLNFALREVLGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLR 697

Query: 634  SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             IE  VN  I   L V    +  EDA   +G  A+ G  Y D VRVVSV           
Sbjct: 698  KIESIVNQQIKDELGVYALEIKLEDAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLADP 757

Query: 683  -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI---TGQRARSHLMGQ 738
              ++    S+ LCGGTH+++T +     ++SE  I  G+RRI A+      +A       
Sbjct: 758  DSKEWLSISTELCGGTHITNTRDAKAFALLSEEGIAKGVRRITAVTAGCATQAMELASSI 817

Query: 739  DEKLKSLASFLKVSQG---------------------NVVGRVEEIWEEYRKLQL----I 773
            D  +   +                             ++ G+V ++ +E RK +      
Sbjct: 818  DSDINEASQLEGALLEKKIASIKSGLDAAAIPAAKKADLRGKVSKLEDELRKAKKKMGEQ 877

Query: 774  HAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            + ++ ++  ++        +  F    +   +D+  ++  +  +  K    I++      
Sbjct: 878  NIQKAVKSAMDAAEAALSGNKLFCVTHVDVGLDTTAVREAVIKVMDKKGLPIMLFSTDEA 937

Query: 833  EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
              KA +   V  +  + F  +D    S   L G GGGG+  +AQ  G + ++  +A+A  
Sbjct: 938  SNKAVIYAGVPPNAPNGFKVLDWLTPSIAPLKGRGGGGKNGIAQGQGSDASQLKEAMALA 997

Query: 893  ASF 895
             S 
Sbjct: 998  NSI 1000


>gi|297284439|ref|XP_002808351.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA synthetase,
           cytoplasmic-like [Macaca mulatta]
          Length = 967

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/972 (31%), Positives = 469/972 (48%), Gaps = 95/972 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIGRLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           + +  +ADG  P N GRG++LR   R A  + +         +  L  L    G A+PEL
Sbjct: 304 TITVALADGGRPDNTGRGFLLREPPRPARRFFKRGXGIVFGFIQPLILLPLCQGDAFPEL 363

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+
Sbjct: 364 KRDPDMVKDIVNEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVDL 423

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
              I   +GL  +D+  F +    +R  A+  S G G+G  + I   +            
Sbjct: 424 TGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAI--------- 469

Query: 461 DLLRGSKFMKEDRKVLC----QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           + LR       D               +     + V A+ ++   VEE  +GQ+  VV D
Sbjct: 470 EELRARGLEVTDDSPKYNYHLDFSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLD 529

Query: 517 QTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +T FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + 
Sbjct: 530 KTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVR 589

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++
Sbjct: 590 LFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQI 648

Query: 633 KSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           K  E+  N++I    PV T+           G  A+    Y D VRVVS+          
Sbjct: 649 KKAEEIANEMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDD 708

Query: 683 --YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   + 
Sbjct: 709 PSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAES 768

Query: 741 KLKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDL 786
             KSL+   + +K       +V   + ++ E        +++K +L    + L+  ++DL
Sbjct: 769 LKKSLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDL 828

Query: 787 SCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                ADV                     +  + S   +K L   +   +        ML
Sbjct: 829 DRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAML 888

Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N    
Sbjct: 889 FTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNIGCL 947

Query: 886 DQAIAGVASFLK 897
            +A+    SF +
Sbjct: 948 QEALQLATSFAQ 959


>gi|304389442|ref|ZP_07371405.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327252|gb|EFL94487.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 895

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/926 (33%), Positives = 479/926 (51%), Gaps = 66/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF KNGHE+ PS  LI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEVRQRWLDFFAKNGHEVRPSVPLISP-DPSILFTIAGMVPFIPYIVGTEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L++T++++DE A+ +W +  GL    + ++   + FW   + GP GPC+EI 
Sbjct: 116 GYGLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMG 229
            D+G    P G P    +G+RY+E+WNLVF +F +  +      P      + +IDTG+G
Sbjct: 176 LDRGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLR-GEGTGKDYPLLGKLDQTAIDTGLG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLI 286
           LER+A VLQ K N Y+ID    +I A++ ++G +Y  +      + R++ DH+RSS  LI
Sbjct: 235 LERLAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGYVLRR+MRRA+   RLLG +E +M  LLPA    M ++YPEL +    
Sbjct: 295 GDGVRPGNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDT 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDIL 405
           I E   +E++ F +TLD G V+LD  ++   +    L+GD AF+L+DT+G PL +  +I 
Sbjct: 355 ISEVAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYD 461
              G+  +D   F + + EQ+ RARA ++   +G  +  ++  L  K G     +F+GY 
Sbjct: 415 AEAGVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGYT 473

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                       + V  I+Q G+ V  A +   +EV+ D+TPFY
Sbjct: 474 ETSAP-----------------------ARVVGILQDGKPVPVATAPATIEVLLDRTPFY 510

Query: 522 AEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AEAGGQL D G      G  L + DVQ   +G+ +H   +  G +        TID + R
Sbjct: 511 AEAGGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERR 570

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
             ++  H++TH++H  L   LG   +Q GS   P  +RFD  ++K +  + +  IE   N
Sbjct: 571 GAIARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEAN 630

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           + +  N+ V    M  E+A  +GA A+ G KY   VR+V +        S   CGGTHV 
Sbjct: 631 ERVQTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSREFCGGTHVP 686

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG I  + ++ ESSI +G+RRIEA+ G  A      +   +  +   +      +V R+
Sbjct: 687 LTGHIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERI 746

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
             + +  +  +    K +L   + +L     S   +  V  +          +L+     
Sbjct: 747 TSLMDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQFAPAGSVDDLRQAATT 806

Query: 816 LQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
           L+ +  +    ++ L  +    K  +++ V E   ++   A  L +  A  +GGGG GG+
Sbjct: 807 LRARFSNANPAVVALAAV-IGGKPMLVVAVNEAAREKGVKAGALVKAGAAAMGGGG-GGK 864

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLK 897
             +AQ GG    K +  +  +   L+
Sbjct: 865 DDLAQGGGALAGKPETGLNALVDTLR 890


>gi|327538393|gb|EGF25065.1| alanyl-tRNA synthetase [Rhodopirellula baltica WH47]
          Length = 945

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/979 (30%), Positives = 456/979 (46%), Gaps = 127/979 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  +L FF+  G    PS  L+P  DP+++FT +GM  FK+ F G+ K  +   
Sbjct: 1   MKTDELREKYLAFFETKGCVRQPSDVLVPAWDPSVLFTPAGMNQFKDHFLGKVKLDFTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R G    D+DNVGRT  HHTFFEMLGNFSFG YFKE AI  AW+ LT  K   
Sbjct: 61  TTCQKCLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKEEAIHWAWEFLTDKKWLG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSE 174
           +   RL +TVY +D+EAF +W    GL   +I R+  ++NFW     S    G CGPCSE
Sbjct: 117 IPGERLTVTVYKDDDEAFGIWHDKIGLPTQRITRMDEDENFWPASAPSEGPDGVCGPCSE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232
           I++               E    +EIWNLVF QF +          LP  +IDTGMGLER
Sbjct: 177 IYYQL-------------EDGSDVEIWNLVFTQFNRVGTPPDNLHPLPSKNIDTGMGLER 223

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGI 290
            A+VLQ    N+ ID    +++A+ +V G+KYE  +      R I DH R+S F + + +
Sbjct: 224 TASVLQGVPTNFHIDSLFPIVEAASEVCGVKYEYESDNGRRLRRITDHARASVFAVHENV 283

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P  +    V+RR++RRA+     +   EP +  L+ A+     +AYPEL Q    + E 
Sbjct: 284 YPGPKDARSVIRRLIRRAVLDGYQMNLREPFLYKLVEAVADASKAAYPELGQTTQRVSEA 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++ F  T+D G+  +  +   +  +   ++ G  A  L  T+G+P +++Q +   +
Sbjct: 344 IESEEKAFFSTIDGGMKRIHRLFEEMNDEASVMVPGAEAADLLTTYGVPPELVQTLAAEQ 403

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
                D   F +A+++    A     G           +LKE    T F+GY+    +  
Sbjct: 404 NFT-FDWSGFREAMDKH---ADESDGGQRVLFQTGPLETLKEALRETPFVGYEQTEATAV 459

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +K       +    D       ++  + + G+ V        + VV D +PFY E+GGQ+
Sbjct: 460 VKGIITGDGKGKGDDGQ-----LLSHLDRPGDAV--------LRVVLDHSPFYGESGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    D    ++ D Q+ A  + VHH  + RG +    +     D +NR  L+  HS
Sbjct: 507 GDIGVISNDNFEFEVIDTQRHAS-LIVHHGRLIRGKINEGETCTAKFDVENRTALARAHS 565

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LHHAL T +G H  Q GS + PD LRFD T+ K I    L  IE +V  ++++   
Sbjct: 566 ATHILHHALHTHVGRHAEQQGSKVEPDRLRFDFTNPKAIDDETLVKIEQDVLSMVSKGDE 625

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +    ++  DA  +GA  L G KY D  R+VS+     G  S  LCGGTH+++T ++   
Sbjct: 626 IRWDTVSLADAREAGAMMLFGEKYPDPCRMVSM-----GTFSRELCGGTHLTNTKQVGSF 680

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            +V E S+  G RRIEA+TG+RA+ H       L  +A  L             + EE R
Sbjct: 681 EVVVEESVSTGTRRIEALTGERAKEHREQTQALLNEVAGKLNCDASVAAAATVALIEEVR 740

Query: 769 KLQLIHAKRKLQ---------LNVEDLSCHKIADVNFMSHIISEVDS------------- 806
           +L+   +  K                     I+D N +   +  +               
Sbjct: 741 RLKKELSSGKAADYPAEFVFDAKAAKAETTDISDYNAVRAAVRGLTRRLNVAITDVLSRL 800

Query: 807 KEL----KSVMDALQK-----------------KIQSGIIMLV----------------- 828
             L      +++ L++                 K+   ++++                  
Sbjct: 801 DSLLADRSKLVEQLKQVTAGGKISADDLIADGTKVGDTLLIVAETPGANPNIMRGWIDQI 860

Query: 829 ------------GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
                         +   K  ++  ++ DL+DR   A D    +AKV+ GG GGGRP MA
Sbjct: 861 RKKSDTPTAVLLASAMNDKVMLVGGLSRDLVDRGLKAGDWVGAAAKVV-GGSGGGRPDMA 919

Query: 876 QSGGPNGNKADQAIAGVAS 894
           Q+GG + +K  +A+     
Sbjct: 920 QAGGKDASKLPEALQQARE 938


>gi|150864558|ref|XP_001383420.2| Alanyl-tRNA synthetase, cytoplasmic (Alanine--tRNA ligase) (AlaRS)
           [Scheffersomyces stipitis CBS 6054]
 gi|149385814|gb|ABN65391.2| Alanyl-tRNA synthetase, cytoplasmic (Alanine--tRNA ligase) (AlaRS)
           [Scheffersomyces stipitis CBS 6054]
          Length = 954

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/965 (31%), Positives = 467/965 (48%), Gaps = 91/965 (9%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
             S +R+TFL++F  K  H+ +PSSS++P NDPTL+F N+GM  +K IF G   P     
Sbjct: 10  TASKVRSTFLDYFTNKRDHKFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTADPASDLA 69

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK  AI  AW+LLT+
Sbjct: 70  SLKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKPEAITWAWELLTE 129

Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + LD+ RLY+T ++         D EA   W K  G++ D I+     DNFW M + GP
Sbjct: 130 VYGLDKDRLYVTYFEGDAKQGLEPDLEAKSFWLK-VGVAEDHILPGNAKDNFWEMGDQGP 188

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           +++    +E+WN+VF+Q+ ++       LP   IDTGM
Sbjct: 189 CGPCSEIHYDRI-GGRNAASLVNQDDPNVLEVWNIVFIQYNREADSSLKTLPAKHIDTGM 247

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           G ER+ +VLQ+K++NYD D+F  +      +TG++  G              +RVI DH+
Sbjct: 248 GFERLVSVLQDKSSNYDTDVFLPIFDKIRDITGIRPYGGKFGAEDTDGIDTAYRVIADHV 307

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAY 337
           R+ +F I DG +P N+G GYVLRRI+RR   Y R             L+  +  +    +
Sbjct: 308 RTLTFAICDGGVPNNDGAGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVDVVIEQNKEIF 367

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHG 395
           PE++     ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G
Sbjct: 368 PEIVHGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYG 427

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P D+ + +    GL  ID  +F +A  E +  ++A     G    +    SL E     
Sbjct: 428 FPSDLTRLMAEEAGLK-IDEPAFEKARLESKEASKAIGNKDGVELVKLDVHSLSE----- 481

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVV 514
                                           + + ++AI      V+       +  V+
Sbjct: 482 ------------LDSNANVSKTDDSAKYGRENIKATIQAIYSSSGFVDSIDDSSVQYGVL 529

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D+TPFYAE GGQ+ DTG  + DG         +   G  +H   +  G L  +  ++ T
Sbjct: 530 LDKTPFYAEQGGQIYDTGKLVIDGKAEFNVTNVQVYGGYVLHTGNIVEGSLNVKDDVIAT 589

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L++AL  +LG  V Q GS + P+ LRFD +H + +T  EL +
Sbjct: 590 YDELRRWPIRNNHTGTHVLNYALREVLGDSVDQRGSLVAPEKLRFDFSHKQALTPKELAA 649

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +E   N+ I  N  V  + ++  +A   +G  A+ G  Y D VRVVS+            
Sbjct: 650 VESISNEYIKSNKEVFYKDVSLNEAREINGLRAVFGETYPDPVRVVSIGVPVEDLLAEPK 709

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----------- 731
             D    S   CGGTHV+ TG+I  L ++ ES I  GIRRI A+TG  A           
Sbjct: 710 KADWHKVSIEFCGGTHVAKTGDIKDLVVIEESGIAKGIRRIVAVTGHDAHAVQKIASEFE 769

Query: 732 --RSHLMG------QDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLI 773
               H  G      ++ K K L   LK    +V+ +           + I ++ +  Q  
Sbjct: 770 AELDHAAGLPFGSVKETKAKELGVALKKLSISVLDKQKLTEKFNKIDKSIKDDLKTKQKA 829

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             K+ L +  E L      D   ++H+    ++K +    + L+K  +   + L+    +
Sbjct: 830 ETKQTLDVVNEWLEKKDAGDY-LVAHVPINANAKAITEAFNLLKKSHKDKSLYLITGLTD 888

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K A    +  E +    NA DLA+  +  +GG   GG+ ++ Q  G       +A+  V 
Sbjct: 889 KVAHGCYIADEAIAKGVNASDLAQAVSAKIGGKA-GGKGNIVQGMGDKPEGIKEAVNEVT 947

Query: 894 SFLKK 898
             L +
Sbjct: 948 QLLAE 952


>gi|315655398|ref|ZP_07908298.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 51333]
 gi|315490338|gb|EFU79963.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 51333]
          Length = 895

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/931 (33%), Positives = 482/931 (51%), Gaps = 70/931 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF KNGHE+ PS  LI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEVRQRWLDFFAKNGHEVRPSVPLISP-DPSILFTIAGMVPFIPYIVGTEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L++T++++DE A+ +W +  GL    + ++   + FW   + GP GPC+EI 
Sbjct: 116 GYGLDGDKLWVTIWEQDEAAWDIWTRQIGLDPAHVQKLPREEIFWDTGQPGPAGPCAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMG 229
            D+G    P G P    +G+RY+E+WNLVF +F +  +      P      + +IDTG+G
Sbjct: 176 LDRGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLR-GEGTGKDYPLLGKLDQTAIDTGLG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLI 286
           LER+A VLQ K N Y+ID    +I A++ ++G +Y  +      + R++ DH+RSS  LI
Sbjct: 235 LERLAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P+NEGRGYVLRR+MRRA+   RLLG +E +M  LLPA    M ++YPEL +    
Sbjct: 295 GDGVRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDT 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDIL 405
           I E   +E++ F +TLD G V+LD  ++   +    L+GD AF+L+DT+G PL +  +I 
Sbjct: 355 ISEVAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYD 461
              G+  +D   F + + EQ+ RARA ++   +G  +  ++  L  K G     +F+GY 
Sbjct: 415 AEAGVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGYT 473

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                       + V  I+Q G+ V  A +   +EV+ D+TPFY
Sbjct: 474 ETSAP-----------------------ARVVGILQDGKPVPVATAPATIEVLLDRTPFY 510

Query: 522 AEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AEAGGQL D G      G  L + DVQ   +G+ +H   +  G +        TID + R
Sbjct: 511 AEAGGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERR 570

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
             ++  H++TH++H  L   LG   +Q GS   P  +RFD  ++K +  + +  IE   N
Sbjct: 571 GAIARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEAN 630

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           + +  N+ V    M  E+A  +GA A+ G KY   VR+V +        S   CGGTHV 
Sbjct: 631 ERVQTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDIGD----GWSREFCGGTHVP 686

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG I  + ++ ESSI +G+RRIEA+ G  A      +   +  +   +      +V R+
Sbjct: 687 LTGHIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERI 746

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
             + +  +  +    K +L   + +L     S   +  V  +  +       +L+     
Sbjct: 747 TSLMDRLKVAEKELEKTRLAALLSNLDDYAKSAETLCGVQIIHQVAPAGSVDDLRQAATT 806

Query: 816 LQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
           L+ +  +    ++ L  +  E K  +++ V E   ++   A  L +  A  +GGGG GG+
Sbjct: 807 LRARFSNANPAVVALAAVIGE-KPMLVVAVNEAAREKGVKAGALVKAGAAAMGGGG-GGK 864

Query: 872 PHMAQSG----GPNGNKADQAIAGVASFLKK 898
             +AQ G    G      +  +  + + L K
Sbjct: 865 DDLAQGGGAPAGKPETGLNALVDTLRTILAK 895


>gi|87307364|ref|ZP_01089509.1| alanyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87290104|gb|EAQ81993.1| alanyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 937

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/962 (31%), Positives = 456/962 (47%), Gaps = 125/962 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  +L F++  GH    S  L+P  DP+++FT +GM  FK+ F G+ K  +   
Sbjct: 1   MKTDELREKYLSFYETKGHSRRASDVLVPTWDPSVLFTPAGMNQFKDHFLGRVKLDFTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R G    D+DNVGRT  HHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 61  TTCQKCLRTG----DIDNVGRTAYHHTFFEMLGNFSFGDYFKPEAISWAWEFLTDKKWLG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSE 174
           L   +L +TVY +D+EA   W +  GL   +I R+  ++NFW     S+   G CGPCSE
Sbjct: 117 LPADQLTVTVYKDDDEAADYWHEKIGLPTSRIHRLEEDENFWPASAPSLGPDGVCGPCSE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232
           I+F       G  P         +EIWNLVF QF +          LP  +IDTGMGLER
Sbjct: 177 IYF----HPKGSSP---------VEIWNLVFTQFNRVGDPPNNLEPLPSKNIDTGMGLER 223

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGI 290
            A  LQ    NY ID+ + +++A+ ++ G+KY   +      R I DH+R+ +F I + +
Sbjct: 224 TAATLQGVATNYHIDILRPIVEAAGEICGVKYVPEDDNGRRLRRITDHVRACTFAIHENV 283

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P      YV+RR++RRA+     +G  EP    L+  +   M + YPEL +    +   
Sbjct: 284 YPGANKEKYVIRRLLRRAVLDGHQMGLREPFAYQLVDKVAEMMKAGYPELQETTQRVANV 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+E F   LD GL   + V + + KD   I++G+ A +LY T+G P ++ + +   +
Sbjct: 344 IRTEEENFLDRLDDGLARTEKVFNTMRKDNLTIVDGNDAAELYQTYGFPPELFEQVAAEK 403

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL   D   +  A+E+          G     T     SLK     T ++GYD       
Sbjct: 404 GL-AFDWPGYKAAMEKFGE---ETGGGTSVLFTTGPIESLKNTLRKTDYVGYDQSEADVT 459

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +K                        +    +   EA     + VV D TPFY E+GGQ+
Sbjct: 460 IKGIVAHDADGASK------------LFDDYDQTGEAHP---LIVVTDCTPFYGESGGQV 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD+G  +G   R  +TD QK    +F+HH  +  G + +       +  + R  +   HS
Sbjct: 505 GDSGEIVGAAFRFVVTDTQKD-SDLFLHHGYLASGKISSNTDAKAIVG-ERRLGIQRAHS 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH+AL   LG+H  Q GS +  D LRFD T+   +T  +L +IE++VN+ +  +  
Sbjct: 563 ATHILHYALQKNLGAHAQQQGSKVDEDWLRFDFTNLAAVTPEQLAAIEEDVNERVEASEK 622

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V    +    A   GA  L G KY D VR+VS+     G  S  LCGGTH++STG++ + 
Sbjct: 623 VKWETVPLAKARELGAMMLFGEKYPDPVRLVSM-----GTFSRELCGGTHLTSTGDVGMF 677

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++SE    AG+RRI A+TG +A+ +       L  +A  L V   +V   V+E+ +  R
Sbjct: 678 EVISEEGPSAGVRRIVALTGTKAKEYRQQVAASLGDIAKSLGVHTLDVPVAVKELMQYVR 737

Query: 769 KLQL----------------IHAKRK--LQLNVEDLSCHKIADVNF--------MSHIIS 802
            L+                  HAK         ++        +N         ++ ++S
Sbjct: 738 DLKKAASGSGQPPEDLRLPTEHAKAAPPSYAAQKETLKETARMINVGMFDAPARIAALLS 797

Query: 803 EVD-----------------------------------------SKELKSVMDALQKKIQ 821
           ++D                                            ++ ++D L+KK  
Sbjct: 798 DIDSLKQEIVARAEIGVLTADDLLAQAELIGDVKLIVAEAPGANPNVMRQLIDQLRKKAA 857

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              ++L+    E K  ++  +++D++     A +  +  + ++ GG GGGRP MAQ+GG 
Sbjct: 858 PCAVLLIAGQGEDKVMMVAGLSQDVVKSGGKAGEWVKTVSTIV-GGSGGGRPDMAQAGGK 916

Query: 881 NG 882
           + 
Sbjct: 917 DP 918


>gi|308235922|ref|ZP_07666659.1| alanyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018]
          Length = 894

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/928 (34%), Positives = 490/928 (52%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F  +GH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTAEIAKRYLDYFGNHGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+ QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSNQKCVRTL----DIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  F+  N + +        L + +IDTG GL
Sbjct: 175 VDRGPKY-GNDGGPAADESRFIEIWDLVFENFQVDNVKSKTDLHIVGELDQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G+KY  NN  +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG  +P++  L P     M  +YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNNTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDI 404
           E    E++ F +TL++G  +LD  +    K+     I+ G  AF L+DT+G P+++  ++
Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLL 463
              +G+  +D   F + + EQ+ RARA +L         ++  +K++      F+GY   
Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKELEKPIDFLGYTDF 472

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522
                                     S V AIV+ G+  V+   +   VEV+ D+TPFYA
Sbjct: 473 SSR-----------------------SNVLAIVEAGKGAVKSVSAPANVEVILDRTPFYA 509

Query: 523 EAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E+GGQ+ D G  I D   + ++ DVQ+  + + VH   +  G L     +   ID   R 
Sbjct: 510 ESGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRA 569

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L+ +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+
Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALLRVEARVNE 629

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +L VV + M  +DA   GA  L G KY D VRVV +        S  LCGGTH  S
Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDIVRVVEIGD----GWSRELCGGTHAKS 685

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +  R+E
Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEEAYEYGAREHALVAQLAGMVNARPDELAERLE 745

Query: 762 EIWEEYRKLQLIHAK-RKLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMD 814
            +  + +      +   + QLN       + +    A V      +    S   L+    
Sbjct: 746 SLLNKMKDSDRKLSSVYESQLNDAVPELVEAAKQSGATVKLAVKNVGNFGSFDALRKTTL 805

Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            ++ ++      I+ L G+++E +  V +   +   D    A DL R ++KVLGGGG GG
Sbjct: 806 DVRSRLGEDTPVIVALCGVNEEDRPMVAVATNDAARDLGAKAGDLVRTASKVLGGGG-GG 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +P  AQ GG + +K D+A+  V S + K
Sbjct: 865 KPDFAQGGGTDASKIDEALDAVKSEVAK 892


>gi|283781582|ref|YP_003372337.1| alanyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283440035|gb|ADB18477.1| alanyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 935

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/980 (30%), Positives = 456/980 (46%), Gaps = 136/980 (13%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  +L FFQ  GH    S  L+P  DP+++FT +GM PFK+ F G+ K  +   
Sbjct: 1   MKTDELREKYLAFFQTKGHTRKASDVLVPRWDPSVLFTPAGMNPFKDHFLGKVKLEFTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R G    D+DNVGRT  HHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   
Sbjct: 61  TTSQKCLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTDKKWLG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSE 174
           +    L +TVY +D+EA  +W    GL   +I R+  +DNFW     S    G CGPCSE
Sbjct: 117 IPGDLLTVTVYLDDDEAADIWHNEIGLPTSRIERMGEDDNFWPASSPSKGPDGVCGPCSE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232
           I++                  + +EIWNLVF QF +          LP  +IDTGMGLER
Sbjct: 177 IYYKLP-------------SGKTVEIWNLVFTQFNRVGNPPNNLRPLPSKNIDTGMGLER 223

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGI 290
           +A+V+Q    NY ID+ + +++A+ +V   KY+  +      R I DH+R+ +F I + +
Sbjct: 224 IASVMQGVDTNYHIDILRPIVEAAAEVCSQKYDPASDNGRRLRRIADHVRACTFAIHENV 283

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP      YV+RR++RRA+     +G  +P +  L+P +   M S YPEL +    +++ 
Sbjct: 284 LPGPNREKYVIRRLLRRAVLDGHQMGLRDPFLYQLVPIVAEMMKSPYPELGETIERVQKG 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+  F  T+D GL  + G+   +      ++ G  A  LY T+G+P ++++++    
Sbjct: 344 IKAEESAFFGTIDAGLARISGMFDSMKSEGRVMVAGGEAADLYQTNGVPPELVENMAAEL 403

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
                D   F  A+EE   R+   +  +          +LK     TQF+GY+       
Sbjct: 404 NFT-FDWDGFRTAMEEHGERSGKIADVVFKTGP---IEALKRALKETQFVGYETTE---- 455

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQK--VEVVFDQTPFYAEAG 525
                               ++ +K +V    +V+     G +  V VV D++PFY E+G
Sbjct: 456 -------------------TTAEIKGVVAAEHLVDTLEEVGHESPVIVVLDKSPFYGESG 496

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GDTG  +G G + Q+ D QK A+ + +H+  +  G +     +   +D   R  +  
Sbjct: 497 GQVGDTGEIVGPGFKFQVIDTQKDAD-LLLHYGHLIEGKMNAGAKVTAKVDTVRRNGIRR 555

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSATH+L +AL   LG    Q GS +  D LRFD  +  P+ + +L  IE  V+  +A 
Sbjct: 556 AHSATHILQYALQQTLGKETHQMGSKVEEDQLRFDFGNPSPVDAEQLLVIEKEVHARVAA 615

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             PV  + +   +A  +GA  L G KY D  R+VS+     G  S  LC GTH+ +T ++
Sbjct: 616 ADPVAWKFVPLTEARTAGAMMLFGEKYPDPARMVSM-----GSFSKELCAGTHLDNTRDV 670

Query: 706 MLLYIVSESSIRAGIRRI----------------------------EAITGQRARSHLMG 737
           +   I++E  + AG RRI                            E +   +A   L  
Sbjct: 671 LAFEIIAEEGVAAGTRRIVALTGEKAKSFSEKTSTALNELANLLGVELLAVPQAVRTLAQ 730

Query: 738 Q------------------------------------DEKLKSLASFLKVSQGNVVGRVE 761
           Q                                       LK  A  L V   +   R  
Sbjct: 731 QVRDLKKQLASGGKGSTTETSPPRGTVSMAPPSAAQIKAALKETARTLNVGPFDAPARAA 790

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQ 817
            + EE   L    A+R     +   S  +    I DV  +       ++  L+ ++D ++
Sbjct: 791 AMLEEVTTLTKQIAERATTSTLSADSLIESATLIGDVKVIVSDAPGSNANILRQLIDQIR 850

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           KK     I+      + K  V+  V+++L+D+  +A +  +  + V+GGGG GGRP +AQ
Sbjct: 851 KKTSPVAILFAAAEADDKVVVVAGVSKELVDKGVSAGNWVKEVSPVVGGGG-GGRPDLAQ 909

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG        A+      +
Sbjct: 910 AGGKIPAMIPDALKKALEVI 929


>gi|311114977|ref|YP_003986198.1| alanine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
 gi|310946471|gb|ADP39175.1| alanine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
          Length = 894

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/928 (34%), Positives = 489/928 (52%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F  +GH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTAEIAKRYLDYFGNHGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+ QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSNQKCVRTL----DIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  F+  N + +        L + +IDTG GL
Sbjct: 175 VDRGPKY-GKDGGPAADESRFIEIWDLVFENFQVDNVKSKTDLHIVGELDQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G+KY  NN  +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG  +P++  L P     M  +YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNNTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDI 404
           E    E++ F +TL++G  +LD  +    K+     I+ G  AF L+DT+G P+++  ++
Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLL 463
              +G+  +D   F + + EQ+ RARA +L         ++  +K++      F+GY   
Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKELEKPIDFLGYTDF 472

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522
                                     S V AIV+ G+  V+   +   VEV+ D+TPFYA
Sbjct: 473 SSR-----------------------SNVLAIVEAGKGAVKSVSAPANVEVILDRTPFYA 509

Query: 523 EAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ+ D G  I D   + ++ DVQ+  + + VH   +  G L     +   ID   R 
Sbjct: 510 ERGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRA 569

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L+ +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+
Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALLRVEARVNE 629

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +L VV + M  +DA   GA  L G KY D VRVV +        S  LCGGTH  S
Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDIVRVVEIGD----GWSRELCGGTHAKS 685

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +  R+E
Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEEAYEYGAREHALVAQLAGMVNARPDELAERLE 745

Query: 762 EIWEEYRKLQLIHAK-RKLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMD 814
            +  + +      +   + QLN       + +    A V      +    S   L+    
Sbjct: 746 SLLNKMKDSDRKLSSVYESQLNDAVPELVEAAKQSGATVKLAVKNVGNFGSFDALRKTTL 805

Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            ++ ++      I+ L G+++E +  V +   +   D    A DL R ++KVLGGGG GG
Sbjct: 806 DVRSRLGEDTPVIVALCGVNEEDRPMVAVATNDAARDLGAKAGDLVRTASKVLGGGG-GG 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +P  AQ GG + +K D+A+  V S + K
Sbjct: 865 KPDFAQGGGTDASKIDEALDAVKSEVAK 892


>gi|269956481|ref|YP_003326270.1| alanyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305162|gb|ACZ30712.1| alanyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
          Length = 895

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/908 (34%), Positives = 474/908 (52%), Gaps = 64/908 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F+   H ++PS+SL+   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTADIRQRWLDYFESKDHAIVPSTSLVSP-DPSILFTIAGMVPFIPYILGTEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R G    D++NVGRT RH TFF+M GNFSFG YFK  AI +AW+LLT +    
Sbjct: 60  ASVQKCIRTG----DIENVGRTTRHGTFFQMNGNFSFGDYFKTGAIDMAWELLTTDQGQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL++T++DED E++    +  GL    I+R+   +NFW   + GP GPC+E  
Sbjct: 116 GYGFDGDRLWVTLWDEDTESYDALTQGIGLDPKHIVRLPRQENFWDTGQPGPAGPCAEWH 175

Query: 177 FDQGECIPGGLPGSSEE--GERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGM 228
           +D+G        G + +  G+RY+EIWNLVF QF +  +      P      + +IDTG 
Sbjct: 176 YDRGPAYGPDAVGGNVDPGGDRYLEIWNLVFDQFVR-GEGTGKDYPLLGELERKAIDTGA 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           GLER+A +LQ K N ++ID    +I+  EQ+TG KY  E  + V  RVI DH+RS   +I
Sbjct: 235 GLERIAFLLQGKENMFEIDETYPVIERVEQLTGKKYGAEAEDDVRMRVIADHVRSGLMVI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P+NEGRGYVLRRI+RRA+   RLLGY    +  LLP     M ++YPEL      
Sbjct: 295 GDGVRPSNEGRGYVLRRILRRAVRSMRLLGYDAEALPELLPVSKDAMKASYPELETGFAK 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I E    E+E F +TL  G  +LD  ++   K   + L G  AF L+DT+G P+D+  ++
Sbjct: 355 IAEVAYGEEEAFRRTLSAGTTILDVAVAKAKKSGVQTLGGAEAFALHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQFIGYDL 462
              +G   +D  +F   + EQ+ RARA +L   +G  +   +   +       +F+GY  
Sbjct: 415 AAEQG-VAVDEQAFRSLMAEQKQRARADALAKKTGHADLRAYESIVSALSAPVEFLGYTD 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L  +                         V  ++  G     A +   VEVV D+TPFYA
Sbjct: 474 LDSAV-----------------------TVVGLLVDGVPAPVATAPADVEVVLDRTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G  + DG   +++ DVQ+  +G+ VH   +  G +        TID + R 
Sbjct: 511 EAGGQLADQGTIVLDGGATVEVDDVQRPIKGLNVHRGRLVEGTITLGDPGTATIDVERRV 570

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +S  HSATH++H AL  ++G   +Q GS   P  +RFD      + ++ L  IE+ VN 
Sbjct: 571 AISRAHSATHMIHKALHELVGDDRTQAGSENAPSRVRFDFRSPSAVPASALGEIEERVNL 630

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            + +NL V   +M    A   GA AL G KY D VRVVS+    GG  S  LCGGTHV  
Sbjct: 631 RLQENLEVTDELMPIATARDLGAMALFGEKYGDIVRVVSI----GGDWSRELCGGTHVRL 686

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           +GEI  + ++ E+SI +G+RR++A+ G+ A      +   +  L   L      +  RV 
Sbjct: 687 SGEIGRVALLGEASIGSGVRRVDALVGEGAYGFQAKEHALVGQLTGLLGARPEELTDRVG 746

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV-DSKELKSVMDA 815
            +  + ++ +   A  +    +            +  V  +++   +V  + +L++++  
Sbjct: 747 SLLSKLKETEKELAALRKGQLLAAAGRLASEASDVDGVRVVTYDAGDVASADDLRALVLD 806

Query: 816 LQKKIQSGIIMLVGI--SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           ++ ++     +LV +  +      V++       +    A D  + +A VLGGGG GG+P
Sbjct: 807 VRGRLGDAAPVLVAVGGTAGGSPLVVVATNAGAREAGLRAGDFVKAAAGVLGGGG-GGKP 865

Query: 873 HMAQSGGP 880
            +AQ GG 
Sbjct: 866 DLAQGGGR 873


>gi|312069509|ref|XP_003137715.1| alanyl-tRNA synthetase [Loa loa]
 gi|307767125|gb|EFO26359.1| alanyl-tRNA synthetase [Loa loa]
          Length = 967

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/976 (30%), Positives = 449/976 (46%), Gaps = 92/976 (9%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M       IR TF+ FF+   H  + SSS+IP +DPTL+F N+GM  +K IF G  +P  
Sbjct: 1   MKALTCDEIRATFINFFKDREHTYVHSSSVIPFDDPTLLFANAGMNQYKPIFLGTVEPSS 60

Query: 59  -----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
                +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+L
Sbjct: 61  EMAKLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKLEVCNWAWEL 120

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LTK   +   RLY++ +  D+        E  ++W    G+    I+     DNFW M +
Sbjct: 121 LTKVLGIPGERLYVSYFGGDDKTGLDADEECRQIWLN-IGVPPSHILSFGMKDNFWEMGD 179

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
            GPCGPCSEI +D+           + +    +EIWNLVF+QF ++       LP   ID
Sbjct: 180 VGPCGPCSEIHYDRIGDRD-ASHLVNADDPMVVEIWNLVFIQFNREEDGSLKQLPHKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276
            G+G ER+  VLQ K +NYD D+F  L  A    T ++               + +RV+ 
Sbjct: 239 CGLGFERLVAVLQNKLSNYDTDVFTPLFSAIHNGTKVRPYSGKVGADDVDGIDMAYRVVA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGS 335
           DH+R+    ++DG  P N GRGYVLRRI+RR + YA   L  T   +  L+P +   +G 
Sbjct: 299 DHIRTLCIALSDGGRPDNTGRGYVLRRILRRGIRYANEKLSATPGFLSSLVPTVVNLLGK 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
            +PEL +    + + +  E+++F KTL++G  L     + L +  IL G+VA++LYDT+G
Sbjct: 359 TFPELHKDPQTVMDIINDEEKQFLKTLNKGRTLFQKAATRLQERNILPGNVAWRLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ Q +   RGL  ID  +F    ++    + A +  +     +    ++ E     
Sbjct: 419 FPLDLTQLMAEERGL-LIDFEAFENCRQQAAEISAARANKMRD-AIDLDVSAISELKNK- 475

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
              G  +   S   K        +  +        I+ A+ +    V+   S     ++ 
Sbjct: 476 ---GIPVTDDSPKYKYYPLPPENQQTMYNFEKCEGIILALRKDKIFVDTLNSEDFGAIIL 532

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQL DTG         +      +  G +V       G L     ++  I
Sbjct: 533 DRTNFYAEQGGQLFDTGVLREVDKGSEFIVSNVQIRGGYVVLVGTVEGELSVGDKVIQAI 592

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R  +  NH+ TH+L+ AL  ++G  V Q GS + PD LRFD+T  +P+T  ++K +
Sbjct: 593 DEERRNLIMKNHTGTHVLNFALRKVVG-EVEQKGSLVAPDRLRFDLTSKQPLTYEQIKIV 651

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+    +I  N  V  +     +A   +G  A+    Y D VR+VSV             
Sbjct: 652 EEESQMLIDTNATVFAKNAPLAEARQINGLRAVFEEAYPDPVRIVSVGVPIEELLKDKDG 711

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           +     +   CGGTH+ + G I  L I  E +I  GIRRI A+TG  A   +   D   +
Sbjct: 712 DLAVNTAVEFCGGTHLHNVGHIGKLVITVEEAIAKGIRRIIALTGPEAFRAIHRADRIEQ 771

Query: 744 SLAS------------FLKVSQGNVVGRVEEIWEEY-----------------RKLQLIH 774
            +                K        R+ +++EE                  + LQ + 
Sbjct: 772 RVEEAHNEIATDRIVTLDKTQFKTASKRIHDLFEEINQSQLPYCRKESIRKKAKALQKLL 831

Query: 775 AKR----------KLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823
             R          K+Q    +L      D  +  HI S   + K L   + +++K   S 
Sbjct: 832 DMRDREAKAAVTDKVQQEARELDASLNGDTLYTVHIFSKGANGKVLDGALKSIKK---SH 888

Query: 824 IIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +M   I+ +  K  V+  V++D+ ++   A +      +VL  G GGG    AQ+ G N
Sbjct: 889 AVMGFSINDDIGKVVVVARVSKDVANKGLQASEWISKVCRVL-DGRGGGTVIQAQATGNN 947

Query: 882 GNKADQAIAGVASFLK 897
               ++A      F +
Sbjct: 948 TELVEEAAQIALKFAE 963


>gi|326471957|gb|EGD95966.1| alanyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 963

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/962 (30%), Positives = 463/962 (48%), Gaps = 94/962 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA  +W+   G+  D I+     DNFW M + GPCGPCS
Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 201

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+
Sbjct: 202 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 260

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L  A + +TG +                 +RV+ DHLR+ +F
Sbjct: 261 VSILQNKSSNYDTDVFSPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTF 320

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ +
Sbjct: 321 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKR 380

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D+
Sbjct: 381 KQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 440

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L   D           R +A+  S G     ++ +  ++            
Sbjct: 441 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKTASDLLKLTVH----------- 484

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   ++++               + + +KAI    E+++      + +++ ++ D+
Sbjct: 485 ----TLSTLEKNGVPKTNDDAKFRKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 540

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  + DG         +   G  +H   ++ G      S++   D 
Sbjct: 541 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 600

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   I+ ++L+ IE 
Sbjct: 601 LRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEA 660

Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V    +        +G  A+ G  Y D VRVVSV               
Sbjct: 661 KSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 720

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A              
Sbjct: 721 WEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRIAREFGERL 780

Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780
                      +D ++KSL   L     + V + +      +I ++    Q    K +++
Sbjct: 781 NRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVK 840

Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             ++ +S          + +  +    + K +   ++ ++ K+    + +       K +
Sbjct: 841 TAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAADT-SKVA 899

Query: 838 VLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               VT DL     +A + A   + ++ GG  GG+  +A   G   NK D+A+     +L
Sbjct: 900 HGCYVTPDLTTKGASANEWASAVSSIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYL 958

Query: 897 KK 898
           +K
Sbjct: 959 EK 960


>gi|311742342|ref|ZP_07716151.1| alanine--tRNA ligase [Aeromicrobium marinum DSM 15272]
 gi|311313970|gb|EFQ83878.1| alanine--tRNA ligase [Aeromicrobium marinum DSM 15272]
          Length = 886

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/906 (35%), Positives = 481/906 (53%), Gaps = 61/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL  F+  GH ++PS+ L+  + P L+F N+GMVPFK  F GQE P +   
Sbjct: 1   MDTAEIRRRFLAHFENAGHTVVPSAPLLLDD-PNLLFVNAGMVPFKPYFLGQETPPWPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW L+T      
Sbjct: 60  TSVQKCVRTL----DIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAITHAWRLITGSINDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D   +++TV   D+E+ ++WK+++GL  ++I      DN+W M   GP GPCSEI+
Sbjct: 116 GLGIDADTIWVTVLHSDQESREIWKRVAGLPDERIQDRGLLDNYWHMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
            D+G    G   G   + +R++EIWNLVFMQ E      +   +    LP  +IDTGMGL
Sbjct: 176 VDRGPEF-GPDGGPVVDEDRFLEIWNLVFMQEEITDVLAKDRFEVVGALPHQNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ+K N Y+ID    +I+ + Q++G  Y  +  + V  RVI DH+RS   L+ D
Sbjct: 235 ERVAYLLQDKRNLYEIDEVYPVIETASQISGRTYGRDHADDVRFRVIADHVRSGLMLMGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NE RGYVLRR++RRA+   RLLG+ +P +  LLP     M ++YPEL      IE
Sbjct: 295 GVTPGNEARGYVLRRLLRRAVRSMRLLGFEDPALPLLLPVSLERMKASYPELEADFPRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+E F +TL +G  + +G  +         L+GD AF L+DT+G P+D+  ++  
Sbjct: 355 QVAYAEEEAFRQTLGKGTQIFEGAAAAVKQQGGSGLSGDAAFTLHDTYGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F   + EQRSRA+A +     G  +  ++ +  +  G T ++ Y  L  
Sbjct: 415 EQGLS-VDEDGFRALMAEQRSRAKADAKSKKGGHADTAVYRAALDAGGPTDWLAYSTL-- 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V A++  G  V    +G   EVV D+TPFYAE+G
Sbjct: 472 ---------------------TTESRVLALIAGGRTVPAIGAGSVGEVVLDRTPFYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G    DG R ++ DVQ+   G+ VH   V  G L  E  L   +D + R     
Sbjct: 511 GQNADAGHLQWDGGRAEVLDVQRPVRGLVVHQVRVLDGELTVESPLEAAVDPEWRLGARQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG    Q+GS   P  LR D   S  ++  +L+ +E+  N  +  
Sbjct: 571 AHSGTHVVHAALREVLGPTALQSGSYNRPGYLRLDYGWSGALSPDQLRGVEEASNRALRA 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +LPV  + M+  +A   GA AL G  Y + VRVV +    GG  S  LCGGTHV  + +I
Sbjct: 631 DLPVTAQTMSLPEAREWGALALFGETYGEDVRVVEI----GGPWSRELCGGTHVDRSSQI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I S+ S+ +G RR+EA+ G     +L  + + ++ L   LK    +V  RV+++ E
Sbjct: 687 GTVVITSDGSVGSGNRRVEALVGIEGFQYLAKERDVVRQLTDLLKAKPDDVPSRVQDLME 746

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             R  +    + K    +            +  V F+   +  V   +L+++   ++ +I
Sbjct: 747 RLRAAEKAAERIKAAELLAGAGDLAHGAVDVGGVAFVGARLDGVGGGDLRTLALDVRGRI 806

Query: 821 Q---SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
                 ++ LVG+  + K +V++ V +   DR  +A  L R + + +GG G GG+  +AQ
Sbjct: 807 PADRPAVVALVGVV-DDKPAVVVAVNQAGRDRGLSANTLVRAAGEQIGGRG-GGKDDVAQ 864

Query: 877 SGGPNG 882
            GG + 
Sbjct: 865 GGGTDP 870


>gi|326477176|gb|EGE01186.1| alanyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 963

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/962 (30%), Positives = 463/962 (48%), Gaps = 94/962 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA  +W+   G+  D I+     DNFW M + GPCGPCS
Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 201

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+
Sbjct: 202 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 260

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L  A + +TG +                 +RV+ DHLR+ +F
Sbjct: 261 VSILQNKSSNYDTDVFSPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTF 320

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ +
Sbjct: 321 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKR 380

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D+
Sbjct: 381 KQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 440

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L   D           R +A+  S G     ++ +  ++            
Sbjct: 441 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKTASDLLKLTVH----------- 484

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   ++++               + + +KAI    E+++      + +++ ++ D+
Sbjct: 485 ----TLSTLEKNGVPKTNDDAKFGKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 540

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  + DG         +   G  +H   ++ G      S++   D 
Sbjct: 541 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 600

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   I+ ++L+ IE 
Sbjct: 601 LRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEA 660

Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V    +        +G  A+ G  Y D VRVVSV               
Sbjct: 661 KSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 720

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A              
Sbjct: 721 WEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRIAREFGERL 780

Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780
                      +D ++KSL   L     + V + +      +I ++    Q    K +++
Sbjct: 781 NRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVK 840

Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             ++ +S          + +  +    + K +   ++ ++ K+    + +       K +
Sbjct: 841 TAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAADT-SKVA 899

Query: 838 VLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               VT DL     +A + A   + ++ GG  GG+  +A   G   NK D+A+     +L
Sbjct: 900 HGCYVTPDLTTKGASANEWASAVSSIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYL 958

Query: 897 KK 898
           +K
Sbjct: 959 EK 960


>gi|21672664|ref|NP_660731.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25009285|sp|Q8K9E7|SYA_BUCAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21623301|gb|AAM67942.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 883

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/909 (36%), Positives = 511/909 (56%), Gaps = 56/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +FL FF++  H ++PSSSLIP ND TL+FTN+GM  FK  F GQ+K  Y  V
Sbjct: 3   KTTNEIRQSFLNFFKEKEHVIVPSSSLIPENDSTLLFTNAGMNQFKEYFLGQKKKFYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TTVQ C+R GGKHNDL+NVG T RHHTFFEMLGNFSF  YFK+ AI  AW+LLT  K F+
Sbjct: 63  TTVQNCLRTGGKHNDLENVGYTKRHHTFFEMLGNFSFNDYFKKEAITYAWELLTSRKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           +D+ +L+I+VY++DEE +K+W+ I  +    I++I +        +NFW M ETGPCGPC
Sbjct: 123 IDKNKLWISVYEDDEETYKIWRDIIRIPCHHIVKIGSKNNSQYDSENFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EIF++  +          +  E +IEIWN+VF++F + +K +   L   SIDTGMGLER
Sbjct: 183 TEIFYNYDDSNKSNDFLKDK-NESFIEIWNIVFIEFNRISKTKIVPLINKSIDTGMGLER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NY ID+F+ LIQ     T +K    N ++ ++I DH+RS +FLIA+ ILP
Sbjct: 242 ISAVLQNVHSNYKIDIFQKLIQKISNFTEIKD--LNNISLKIIADHIRSCAFLIAENILP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +   +G        L+P+L   MG +   L + + +IEETL+
Sbjct: 300 SNEHRGYVLRRIIRRALRHGHKIGIKNNFFYKLVPSLIEIMGDSAKILRKKEKIIEETLK 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ +F +TLD+GL +L+  +     ++ ++G  AF LYDT G P+D+  DI   + +  
Sbjct: 360 IEEIQFSQTLDKGLKILNAEIKK-STNKTISGKTAFYLYDTFGFPIDLTSDICSEKNIK- 417

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   FN A EEQ+ R+   +        + I            F GY            
Sbjct: 418 IDFKGFNIAKEEQKKRSSIKNKFYKDYNKDIIIND------TCIFEGY------------ 459

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   S+VK I  + E V     GQ   +  D+T FY E+GGQ+GD G
Sbjct: 460 -----------KKNKTKSLVKYIFIKNESVFLIYKGQTATIFLDKTSFYPESGGQIGDIG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + + +K  +    H+  +  G +    S+   I++  R  + +NHSATHL
Sbjct: 509 ELYHKKSRFIVENTKKYGDT-IGHYGKLISGKIIVNDSIYSKINHVYRNAIQLNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG +  Q GS ++   LRFD ++S  I  +++++IE+ +N  I  N  +  +
Sbjct: 568 LHAALQKVLGKNAIQKGSLVSNTHLRFDFSYSGNINLSQIQNIENIINKKIRSNDLIKIK 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            ++ E+A    A AL   KY   VRVV +        S  LCGGTH   TG I L  I+ 
Sbjct: 628 NLSLEEAKKKKAIALFDYKYQSSVRVVFI-----KDFSIELCGGTHTKRTGNIGLFKIIE 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +SS+ +GI+RIEA+TGQ+A  +L  +D  +++++  LK     +  ++++I  +  KL+ 
Sbjct: 683 QSSVSSGIKRIEAVTGQQAIDYLHIKDNDMQNISFLLKCQNSKITEKIKKIIIQVEKLEK 742

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + + + N+  +       + I  +N + +  +  D K +K ++D L+K+++  II+ 
Sbjct: 743 KTDQLQKRENIYQIKKLSKKINNIKGINLLINTFTNYDQKSMKMIIDQLKKELKISIIIF 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  +K    +V+I VT++L++   A+ +  +  K   G G GG+  +A+ GG N  K   
Sbjct: 803 INKNKND-FTVIIRVTKNLINYITALKIINIFIKKANGKG-GGKKEIAEGGGMNIKKLPM 860

Query: 888 AIAGVASFL 896
            +  + S++
Sbjct: 861 ILNYIKSWI 869


>gi|257413376|ref|ZP_04742849.2| alanine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203713|gb|EEV01998.1| alanine--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 778

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/794 (39%), Positives = 453/794 (57%), Gaps = 46/794 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT 
Sbjct: 13  NELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTTC 72

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L++ R
Sbjct: 73  QKCIRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIHWSWEFLTQVLGLEEDR 128

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSEIFFD 178
           LY ++Y ED+EAF++W K  G+ A+KI R          DNFW     GPCGPCSEI++D
Sbjct: 129 LYPSIYGEDDEAFEIWNKEVGVPAEKITRFYRDPETGECDNFWEHG-AGPCGPCSEIYYD 187

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      + +R++E+WN VF QFE   K     L + +IDTGMGLER+A V
Sbjct: 188 RGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELAQKNIDTGMGLERLAVV 247

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +DID  K +     +++G KY+ +  + V+ R+I DH+RS++F+I+DGI+P+N
Sbjct: 248 MQDVDSVFDIDTMKAIRDKVCEMSGKKYQVDALDDVSIRLITDHIRSATFMISDGIMPSN 307

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  + R+LG     M  L   +  E    YPEL + K  I + L  E
Sbjct: 308 EGRGYVLRRIIRRAARHGRMLGIDGIFMAKLAATVINESKDGYPELEEKKDFIFKVLSQE 367

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+FGKT+D+GL +L  +   +  D  ++L+G+ AFKLYDT+G P+D+ Q+IL  +G + 
Sbjct: 368 EEKFGKTIDQGLSILSDMEKQMEADGVKVLSGENAFKLYDTYGFPMDLTQEILEEKGFS- 426

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E QR+ AR           ++  +   +    T+F+GYD L         
Sbjct: 427 VDEEGFKKAMEVQRTTARKARKVTNYMGADETVYESVDPSVTTEFVGYDSL--------- 477

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  + EIVE    G+   V+ +QTPFYA  GGQ GD G
Sbjct: 478 --------------NCKSKITVLTTETEIVEALSDGEVGTVIVEQTPFYATMGGQQGDKG 523

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    Q+ D  K   G   H   +  G+++T     L++D   R ++  NHSATHL
Sbjct: 524 IIRTAAGEFQVEDTIKLLGGKVGHVGKMISGMMKTGDEADLSVDAALRAKICKNHSATHL 583

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q GS    +  RFD +H   +T  EL+ +E  VND IA+ +PV T 
Sbjct: 584 LQKALREVLGTHVEQAGSYQDGERTRFDFSHFAAMTPEELEKVEKIVNDKIAEAIPVRTD 643

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A  +GA AL G KY + VRVVS+     G  S   CGGTHV +T EI    I+S
Sbjct: 644 VMTVDEAKKTGAMALFGEKYGETVRVVSM-----GDFSKEFCGGTHVKNTSEIAAFKIIS 698

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG+RRIEA+TG    ++    +++L   A   K +   +  ++E +  E + L  
Sbjct: 699 ENGVAAGVRRIEALTGDNVFAYYRNLEKELLEAAKAAKATPATLTEKIEHMQAEIKALTS 758

Query: 773 IHAKRKLQLNVEDL 786
            +   K +   E L
Sbjct: 759 ENESLKSKAAKEAL 772


>gi|187250451|ref|YP_001874933.1| alanyl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|205830087|sp|B2KAQ0|SYA_ELUMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|186970611|gb|ACC97596.1| Alanyl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 868

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/910 (32%), Positives = 471/910 (51%), Gaps = 57/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR +FL FF+  G  ++ SSSLIP  DPTL+FT++GMV FK  F G +K      
Sbjct: 1   MDSKEIRASFLNFFKSKGCTVVASSSLIPQADPTLLFTSAGMVQFKANFLGLDK-SLHRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR      D+D+VG TNRH TFFEMLGNFSFG YFKE+AI  AW+ LT+   + 
Sbjct: 60  VTCQKCVRT----TDIDSVGFTNRHLTFFEMLGNFSFGDYFKEQAINWAWEYLTQTLQIP 115

Query: 122 QRRLYITVY-----DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
             +LY+++Y     + D EA+  W K   L  +KI  +   DNFW+M  TGPCGPCSEI+
Sbjct: 116 AEKLYVSIYKGGIAERDNEAYNFWLK--HLPKEKIFELGEKDNFWTMGPTGPCGPCSEIY 173

Query: 177 FDQGEC-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G+            +  R++EIWN+VF QF++++      L + +IDTGMGLER+  
Sbjct: 174 YDFGDKGCKNKNCNIECDCGRFVEIWNIVFTQFDRKDDGSIVPLSQKNIDTGMGLERLVM 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-HRVIVDHLRSSSFLIADGILPAN 294
            +Q   + ++ DLF   I  ++++  ++ +    ++  R++ DH+RSS FLI++GILP+N
Sbjct: 234 AMQNVQSPFETDLFTPTINEAKKLLKIEGKIKEEISTLRIVSDHIRSSVFLISEGILPSN 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ Y +L G   P +  L+  +    G  YPE+   K  I   +++E
Sbjct: 294 EGRGYILRRLIRRALRYGKLAGVKGPFLHLLVSVIDLHFGEIYPEIRNNKNYISSVIKTE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F KTL+ G   L+ ++      + ++G+ AF LY+T G P+++ ++I  A+GL  +D
Sbjct: 354 EEAFFKTLENGEERLEDIIKK--SKKTISGENAFYLYETFGFPVELTKEIALAKGL-ALD 410

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             SF +A +E R ++R       S     +   ++     T F+GY+ ++          
Sbjct: 411 EESFEKAKKEAREKSR-SYADEFSKEKLVVLQKIENSLKNT-FVGYEQIQTKSK------ 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                               IV   +  +          V D+TPFYA  GGQ+GD G  
Sbjct: 463 ------------------VLIVLNDKFEQVKELSGPGYAVLDKTPFYATGGGQMGDRGAF 504

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                +  ++  +K    I + HA+   G+L+    + + ID  NR++ + NH+A HL++
Sbjct: 505 SWKDGQALVSTAEKPLSNIIL-HAVEVSGVLKEGSEIEVKIDPVNRKKTAANHTAVHLIN 563

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G  V Q GS ++ D  RFD T     TS +L  + +  N+ + +  PV   I 
Sbjct: 564 EALRQVIGESVHQAGSFVSADVFRFDYTAPHAPTSEQLARVFEMANNAVIRAHPVNCEIR 623

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIV 711
             EDA   GA  L+G +Y D  R V V          +S  LCGGTHV++T EI+ + ++
Sbjct: 624 PLEDAKKLGAVTLVGEQYADPARFVMVGANFNEPSLKYSLELCGGTHVNNTSEIITVILI 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E ++ AG+RRIE + G  A  +L      L ++A  L+ S   V  RV  + E+ +  +
Sbjct: 684 KEGALSAGVRRIEGVAGIAAIDYLKENTHALSAMAKTLETSLKEVPARVNSVLEDLKAAK 743

Query: 772 LIHAKRKLQLNVEDLSCHKI-----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  + +L        ++          +S      + KEL+++ D+L +K +  +I+
Sbjct: 744 KEIASLRQKLLTGGSGGTQVKEDVLNGKKIISMKAEGANPKELRTLADSLSQKHKDAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            + +    + S +  V +      +A  LA+  A  +  G  GG+   AQ G       +
Sbjct: 804 -IAVDNGDRRSFV--VKKAEGSNTDACTLAKGLAGKME-GSAGGKADFAQGGCK-VTDWN 858

Query: 887 QAIAGVASFL 896
           + +  +   L
Sbjct: 859 EFLKTIKELL 868


>gi|32475431|ref|NP_868425.1| alanyl-tRNA synthetase [Rhodopirellula baltica SH 1]
 gi|41018176|sp|Q7UFH9|SYA_RHOBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|32445972|emb|CAD78703.1| alanyl-tRNA synthetase [Rhodopirellula baltica SH 1]
          Length = 945

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/979 (30%), Positives = 454/979 (46%), Gaps = 127/979 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  +L FF+  G    PS  L+P  DP+++FT +GM  FK+ F G+ K  +   
Sbjct: 1   MKTDELREKYLAFFETKGCVRQPSDVLVPAWDPSVLFTPAGMNQFKDHFLGKVKLDFTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R G    D+DNVGRT  HHTFFEMLGNFSFG YFKE AI  AW+ LT  K   
Sbjct: 61  TTCQKCLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKEEAIHWAWEFLTDKKWLG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSE 174
           +   RL +TVY +D+EAF +W    GL   +I R+  ++NFW     S    G CGPCSE
Sbjct: 117 IPGERLTVTVYKDDDEAFGIWHDKIGLPTQRISRMDEDENFWPASAPSEGPDGVCGPCSE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232
           I++               E    +EIWNLVF QF +          LP  +IDTGMGLER
Sbjct: 177 IYYQL-------------EDGSDVEIWNLVFTQFNRVGTPPDNLHPLPSKNIDTGMGLER 223

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGI 290
            A+VLQ    N+ ID    +++A+ +V G+KYE  +      R I DH R+S F + + +
Sbjct: 224 TASVLQGVPTNFHIDSLFPIVEAASEVCGVKYEYESDNGRRLRRITDHARASVFAVHENV 283

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P  +    V+RR++RRA+     +   EP +  L+ A+     +AYPEL Q    + E 
Sbjct: 284 YPGPKDARSVIRRLIRRAVLDGYQMNLREPFLYKLVEAVADASKAAYPELGQTTQRVSEA 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++ F  T+D G+  +  +   +  +   ++ G  A  L  T+G+P +++Q +   +
Sbjct: 344 IESEEKAFFSTIDGGMKRIHRLFEEMNDEASVMVPGAEAADLLTTYGVPPELVQTLAAEQ 403

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
                D   F +A+++    A     G           +LKE    T F+GY+    +  
Sbjct: 404 NFT-FDWSGFREAMDKH---ADESDGGQRVLFQTGPLETLKEALRETPFVGYEQTEATAV 459

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +K       +    D       ++  + +  + V        + +V D +PFY E+GGQ+
Sbjct: 460 VKGIITGDGKGKGDDGQ-----LLSHLDRPEDAV--------LRLVLDHSPFYGESGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    D    ++ D Q+ A    VHH  + RG +    +    +D +NR  L+  HS
Sbjct: 507 GDIGVISNDNFEFEVIDTQRHASM-IVHHGRLIRGKINEGETCTAKVDVENRTALARAHS 565

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LHHAL T +G H  Q GS + PD LRFD T+ K I    L  IE +V  ++ +   
Sbjct: 566 ATHILHHALHTHVGRHAEQQGSKVEPDRLRFDFTNPKAIDDETLVKIEQDVLGMVGKGDE 625

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +    ++  DA  +GA  L G KY D  R+VS+     G  S  LCGGTH+++T ++   
Sbjct: 626 IRWDTVSLADAREAGAMMLFGEKYPDPCRMVSM-----GTFSRELCGGTHLTNTKQVGSF 680

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            +V E S+  G RRIEA+TG+RA+ H       L  +A  L             + EE R
Sbjct: 681 EVVVEESVSTGTRRIEALTGERAKEHREQTQALLNEVAGKLNCDASVAAAATVALIEEVR 740

Query: 769 KLQLIHAKRKLQ---------LNVEDLSCHKIADVNFMSHIISEVDS------------- 806
           +L+   +  K                     I+D N +   +  +               
Sbjct: 741 RLKKELSSGKAADYPAEFVFDAKAAKAETTDISDYNAVRAAVRGLTRRLNVAITDVLSRL 800

Query: 807 KEL----KSVMDALQK-----------------KIQSGIIMLV----------------- 828
             L      +++ L++                 K+   ++++                  
Sbjct: 801 DSLLADRSKLVEQLKQVTAGGKISADDLIADGTKVGDTLLIVAETPGANPNIMRGWIDQI 860

Query: 829 ------------GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
                         S   K  ++  ++ DL+DR   A D    +AKV+ GG GGGRP MA
Sbjct: 861 RKKSDTPTAVLLASSMNDKVMLVGGLSRDLVDRGLKAGDWVGAAAKVV-GGSGGGRPDMA 919

Query: 876 QSGGPNGNKADQAIAGVAS 894
           Q+GG + +K  +A+     
Sbjct: 920 QAGGKDASKLPEALQQARE 938


>gi|156839933|ref|XP_001643652.1| hypothetical protein Kpol_1040p7 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114272|gb|EDO15794.1| hypothetical protein Kpol_1040p7 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 956

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/948 (30%), Positives = 457/948 (48%), Gaps = 91/948 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + +R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TAAVVRNTFLDYFKSKEHKFVRSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPSSEFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ A++ +W+LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAVEYSWELLTQV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY+T ++ DE        EA +LW+   G+  D I+     DNFW M E GPC
Sbjct: 130 YSIPADRLYVTYFEGDEKQGLEPDHEARELWRS-VGVPDDHILPGNAKDNFWEMGEQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +E+WNLVFMQ+ ++  +    LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAAHLVNQDDPDVLEVWNLVFMQYNREQDRSLKSLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F+ L +A +++  ++                 +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFQPLFKAIQEIANVRPYTGKFGAEDVDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L+P L  ++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSRLMPTLIEQVKDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGL 396
           E+ +    + E L  E+  F KTLDRG  L +   +   + E   L+G   ++LYDT+G 
Sbjct: 368 EVAKDPSFVAEILDEEEASFSKTLDRGEKLFEKYAAAASQTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L        
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDNSDLLKLNVHEL-------- 478

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                       + E++            + V   +  +    + V+E    G+K  ++ 
Sbjct: 479 ----------SQLNEEKIAKSDDSSKYGFDNVDGTILKLYDGEQFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D T FYAE GGQ  DTG  I D +     +  +   G   H   +  G L     ++   
Sbjct: 529 DNTCFYAEQGGQEYDTGKIIIDDVAEFNVENVQLYNGYVFHTGSLVEGKLSVGDKIIAAY 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L++AL   LG+ V Q GS + P+ LRFD +H K ++  EL+++
Sbjct: 589 DELRRHPIKNNHTGTHILNYALKETLGNDVDQKGSLVAPEKLRFDFSHKKALSLDELRNV 648

Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N  I  N+      +        S   A+ G  Y D VRVVSV             
Sbjct: 649 EEVCNQQIKDNMAVYYKEVPLDLAKTISSVRAVFGETYPDPVRVVSVGKPIDEILANPSN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG------ 737
           E+   +S   CGGTHVS TG+I    I+ ES I  GIRRI A++G  A            
Sbjct: 709 EEWNKYSIEFCGGTHVSKTGDIKYFIILEESGIAKGIRRIVAVSGTDAFEAQRIANEYES 768

Query: 738 -------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                        +++KLK L   L       + +  +  +  +I +  +      AK +
Sbjct: 769 ELESTEKLPFSPLKEKKLKELGVQLGQLSISVIKKNELKEKFTKIEKSVKDEVKSRAKLE 828

Query: 779 LQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-GISKEK 834
            +  ++++          +  + HI    ++K +   +  ++ K +   I L+ G   E 
Sbjct: 829 TKQVLDEVKEHFTENTESLFLVKHIDIPPNAKAITEAIAHIKTKNKDKTIYLLTGNDPEG 888

Query: 835 KASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + +    +++  +    +   LA+  +  + GG  GG+ ++ Q  G  
Sbjct: 889 RVAHGCFISDVAISKGVDGAALAKKVSASI-GGKAGGKGNVFQGMGDK 935


>gi|317507135|ref|ZP_07964895.1| tRNA synthetase class II [Segniliparus rugosus ATCC BAA-974]
 gi|316254581|gb|EFV13891.1| tRNA synthetase class II [Segniliparus rugosus ATCC BAA-974]
          Length = 830

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/861 (36%), Positives = 452/861 (52%), Gaps = 59/861 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL  F KNGHEL PS+SLI  +DP L+F N+GMV F   F GQ  P    +
Sbjct: 1   MRTAEIIERFLGHFIKNGHELTPSASLI-LDDPNLLFVNAGMVQFVPYFLGQRTPPSPRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AIQ AW LLT      
Sbjct: 60  TSVQKCVRT----QDIEEVGVTTRHNTFFQMAGNFSFGDYFKEGAIQFAWSLLTSSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL+ TVY++D+EA +LWKK++GL  ++I R    DN+WSM   GP GPCSEI+
Sbjct: 116 GYGFDPNRLWATVYEDDDEAIELWKKVAGLPDERIQRRGPADNYWSMGIPGPSGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           FD+G    G   G   + +RY+EIWNLVFMQ E      + +      LPK +IDTGMG+
Sbjct: 176 FDRGPEF-GADGGPEADEDRYLEIWNLVFMQNELAAIRSKTDFDIAGPLPKRNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ D+ + +I  +EQ+TG +Y      +    RVI DH R++  LI 
Sbjct: 235 ERVAFLLQGVDNVYETDVVRPVIDCAEQLTGRRYGAGSHADDTRFRVIADHARTAVMLIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  ARLLG TE +   L+  +   M   YPEL++    I
Sbjct: 295 DGVNPGNDGRGYVLRRLLRRIVRSARLLGATEMVTPALVREVVAAMSPMYPELLREAPRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E     E+  F  T+D G  L + V   +     +++ G  AF L+DT+G PL++  ++ 
Sbjct: 355 ERIAAGEETAFRNTIDSGSKLFEQVAEGVRSSSGKVIPGAEAFALHDTYGFPLELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D   F + + EQR+RA+A +        ++  +       AT+F GYD L  
Sbjct: 415 QEVGL-QVDQEGFARLMAEQRNRAKADAKARKQAHADQSVYHELLDGPATEFTGYDELSS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                     +  IV  G++  E  +GQ+ +++ D+TP YAE+G
Sbjct: 474 R-----------------------GSILGIVVDGQLANEVHAGQEAQIILDRTPLYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQL DTG     G    +TDVQ+ A+ +F H   V  G       +   +D + R   + 
Sbjct: 511 GQLADTGSISAPGAHADVTDVQRIAKRLFTHRVKVTEGAFAVGAEVTAQVDSKWRHGANQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS THL+H AL  +LG   +Q GS   P  LRFD      ++    + IE  V + +  
Sbjct: 571 GHSGTHLVHAALRQVLGPEATQAGSLNKPGYLRFDFRWHSALSPETRQDIESVVAEAVET 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           + PV T + + + A + GA AL G  Y +RVRVV +    GG  S  LCGGTHV+S+G+I
Sbjct: 631 DYPVNTFVTDIDRARSMGALALFGENYGERVRVVEI----GGPFSMELCGGTHVASSGKI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + ++ ESS  +G RR+EA+ G  AR HL  +   L ++AS +         +V  + E
Sbjct: 687 GPVVLLGESSTGSGTRRVEALVGYDAREHLAKERTLLAAVASAVGSPAAEAPDKVRALVE 746

Query: 766 EYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             + L+   A++              +   +  V F+     EVDS +L+ +  +L+   
Sbjct: 747 RVKTLEREIARQAQAQARAQAVGLAATAVPVGAVEFVGA---EVDSDDLRGLATSLKDAF 803

Query: 821 QS-GIIMLVGISKEKKASVLI 840
                +  +      K S  +
Sbjct: 804 GPRAAVAALFHKSGGKVSFAV 824


>gi|291456669|ref|ZP_06596059.1| alanine--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291381946|gb|EFE89464.1| alanine--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 892

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/926 (34%), Positives = 492/926 (53%), Gaps = 64/926 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTADIAKRYLDYFAKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+ QKCVR      D+D VG+T RH TFF+MLGNFS G YFKE AI  AW+LLT      
Sbjct: 60  TSNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTFTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  +E  N + +        L + +IDTG GL
Sbjct: 175 VDRGPEY-GRDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G KY  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P++  LLP     M ++YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVQAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G+ +LD  +    K  D +++G  AF L+DT+G P+++  ++  
Sbjct: 354 EAAYGEEDAFRRTLENGIEILDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+  V        VEV+ D+TPFYAEA
Sbjct: 471 ---------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D    L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T+ M  +DAIA GA  L G KY D VRVVS+        S  LCGGTHV   G
Sbjct: 630 RDNLAVTTKEMKFDDAIALGAMHLFGEKYGDVVRVVSIGE---DGWSRELCGGTHVDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNTL 746

Query: 764 WEEYRKLQLIHAKR-KLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + QL        + + +  A V      +    +   L+  +  +
Sbjct: 747 LAKLKESDRRLASMYEAQLAAAVPALVEDAKNSAAPVKVAIKNVGHFGAVDALRKTVLDV 806

Query: 817 QKKIQS---GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G++++ K  V +   E        A DL R ++K+LGGGG GG+P
Sbjct: 807 RGQLGEDAPAVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGASKILGGGG-GGKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
             AQ GG + +K ++A+  +    +K
Sbjct: 866 DFAQGGGADASKINEALEALKHEAQK 891


>gi|255072777|ref|XP_002500063.1| predicted protein [Micromonas sp. RCC299]
 gi|226515325|gb|ACO61321.1| predicted protein [Micromonas sp. RCC299]
          Length = 923

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/935 (34%), Positives = 469/935 (50%), Gaps = 86/935 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FLEF+++ GH  LPSSSL+P  DPT++ T +GM+ FK +F GQ +      T
Sbjct: 28  SGSGIRRRFLEFYEQRGHARLPSSSLVPE-DPTVLLTIAGMLQFKPVFMGQAERAVPCAT 86

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVG T RHHTFFEMLGNFSFG YFK+ AIQ AW+L TKE+ LD+
Sbjct: 87  TTQKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIQYAWELATKEYGLDE 142

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+Y++V+ ED+EA+ +W+ + G+  ++I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 143 TRIYVSVFREDDEAYAIWRDVVGVPEERIKRMDEADNFWAAGPTGPCGPCSELYWDFHPE 202

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFM+  +    +   L   +IDTGMGLERMA +LQ K N
Sbjct: 203 -RGAEGADLEDDSRFIEFYNLVFMEMNRDASGKTAPLKNKNIDTGMGLERMAQILQGKPN 261

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL + +I  +  + G+ Y+  +       +VI DH R+ ++L++DG+LP+N GRGY
Sbjct: 262 NYETDLIRPIIDKAASMAGISYDDADDATKLKLKVIGDHTRAVAYLVSDGVLPSNVGRGY 321

Query: 300 VLRRIMRRAMCYARLLGYT-----EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           ++RR++RR +   RLLG       +     +        G   PE+      I E    E
Sbjct: 322 IVRRLLRRVVRCGRLLGVKAPEGAQAFTPTIAEVAVGMSGDCDPEVANRAPKIYEEFERE 381

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI----LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           + RF KTL RG  +L  +++     +     L+GD AF LYDT+G PLDI  D+    G 
Sbjct: 382 ELRFAKTLGRGEEILADMIAAAKAKDAEAPELSGDDAFTLYDTYGFPLDITTDVATEEG- 440

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D+  F  A+E  R+ +R   + +     + +     E    T+F GY  L       
Sbjct: 441 VAVDVEGFEAAMEIARTLSRDARVTVDVTAGDLLATIADELGEPTRFTGYGSL------- 493

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             S  V+AIV+ GE V+ A +G+ VEVV D TPFYAE GGQ+GD
Sbjct: 494 ---------------VEQSVTVRAIVRAGERVDSAAAGETVEVVLDATPFYAEGGGQVGD 538

Query: 531 TGCAIGDGIRLQITDVQKK--AEGIFVHHAI---VERGILRTEMSLVLTIDYQNRRQLSI 585
            G        +      +K     +FVH         G +    ++   +D ++RR+   
Sbjct: 539 EGEIQLANGVVLSVRDCRKAAGGRVFVHVCEVTGDASGSVSVGDAVTAAVDAESRRRAKA 598

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  ++G  VSQ GS +  + LRFD       T A+L+ IE  VN  I  
Sbjct: 599 NHTATHLLQSALKRVVGEDVSQAGSLVNTERLRFDFNAPAGPTPAQLEEIEALVNGWIGD 658

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
              +V + M   +A + GA A+ G KY D V        D    S  LCGGTHV++T EI
Sbjct: 659 ATNLVAQEMPIAEAKSRGATAMFGEKYGDVV-----RVVDVPGVSMELCGGTHVANTAEI 713

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IVSE+ I AG+RRIEA++G      L  ++  ++ LA  L+V    + GRV  + +
Sbjct: 714 GGFKIVSEAGIAAGVRRIEAVSGPGVVELLNQREGVVRELAGALRVPPEEIAGRVTSLMD 773

Query: 766 EYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           + R  Q      + +L       +   +         +   +  VD   LKS  ++L  K
Sbjct: 774 DLRAAQKEAEALRGELAAAKSVALAADAIVASNGSRVLVARLDGVDPAALKSAAESLLAK 833

Query: 820 ------IQSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLA----------RLSAK 861
                      ++L   S + K  ++ +  E++       A  +                
Sbjct: 834 LAGEAGGAGAAVVLGSGSADGKVGLVAIFDEEVQSAGGLKAGAVLGAAAKACGGGGGGKP 893

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                         Q+GG +  + D A+ G    +
Sbjct: 894 GFA-----------QAGGRDATQLDAALDGARDTI 917


>gi|297737260|emb|CBI26461.3| unnamed protein product [Vitis vinifera]
          Length = 960

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/972 (31%), Positives = 456/972 (46%), Gaps = 110/972 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            + +R TF+ FF+   H    SS ++P NDPTL+F N+GM  FK IF G   P       
Sbjct: 13  AAKVRDTFISFFEAKEHVNWVSSPVVPLNDPTLLFANAGMNQFKPIFLGTADPNTPLSKL 72

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI+ AW+LLT+  
Sbjct: 73  TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAIEWAWELLTEAI 132

Query: 117 ---EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
               + L   R Y T +          D+EA  +W K   L    ++     DNFW M +
Sbjct: 133 CNKVYKLPTDRFYATYFGGDEQLGLAPDDEARDIWLKF--LPPGHVLPFGCKDNFWEMGD 190

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPC+EI FD+           + +    IEIWNLVF+QF +++      LP   +D
Sbjct: 191 TGPCGPCTEIHFDRIGNRD-ATSLVNNDDPTCIEIWNLVFIQFNRESDGSLKPLPAKHVD 249

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIV 276
           TGMG ER+ ++LQ K +NYD D+F  +  A    T         G +      + +RV+ 
Sbjct: 250 TGMGFERLTSILQNKMSNYDTDVFLPIFDAIHLATGAPLYSGKVGTEDVDKVDMAYRVVA 309

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGS 335
           DH+R+ SF IADG  P NEGR YVLRRI+RRA+ Y    L   E     L+  +   MG 
Sbjct: 310 DHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVGVVVKVMGD 369

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
            +PEL Q ++ I   + +E+  FGKTL +G+         +   +IL+G  AF L+DT+G
Sbjct: 370 VFPELKQHEMHIRGIIAAEEASFGKTLIKGIEKFKKAAQEVQ-GKILSGQEAFVLWDTYG 428

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ Q +   RGL  +D++ FN A++E R R+R        G                
Sbjct: 429 FPLDLTQLMAEERGLT-VDVMGFNIAMDEARERSRNAQNKKAGGAIVM------------ 475

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
                D    +   K                   S++KAI    E +E A +G +V ++ 
Sbjct: 476 -----DADATAALHKMGVAATDDISKFTWFEDHESVIKAIYTGIEFLESAAAGDEVGIIL 530

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLT 574
           + T FYAE GGQ+ DTG   G     Q+ +VQ      + +     E G       ++  
Sbjct: 531 ETTSFYAEQGGQIFDTGSLEGSCGSFQVCNVQIYGGFVLHIGSVTGEIGRFSVGDKVICK 590

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +DY  R+ ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KPI    L+ 
Sbjct: 591 VDYDRRKLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPIHPDHLRR 650

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           IE  VND I   L V  +     DA   +G  A+ G  Y D VRVV++            
Sbjct: 651 IESIVNDQIKDELDVYGKEATLADAKRINGLRAVFGEVYPDPVRVVTIGRKVEDLLADPD 710

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---GQD 739
             +    S+ LCGGTH+S+T E     ++SE  I  GIRRI A+T   A   +      +
Sbjct: 711 NAEWLSVSAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDSAFKAMELAFSLE 770

Query: 740 EKLKSLASFLKV---------------------SQGNVVGRVEEIWEEYRKLQLIHA--- 775
           +++ + +                           + ++  ++  + ++ RK Q   A   
Sbjct: 771 QEVDAASDAEGSLLEKKVASLRSRVDAAPIPAPKKADLRTKISLLQDQVRKEQKKIAEEN 830

Query: 776 -KRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            ++ +++  E           F   ++   +D+  ++  +  + ++    +++       
Sbjct: 831 IQKAVKVATEMADGAASDGKAFCISLVDVGLDTTAVREAVLKVIEQKGISVMVFSTDETT 890

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP----------HMAQSGGPNGN 883
            KA V   V E+  ++F  ++++      LG       P           +AQ  G + +
Sbjct: 891 NKAVVYAGVPEN-GEKFKQLEVSEWLTAALG-------PLKGRCGKGKGGLAQGQGTDAS 942

Query: 884 KADQAIAGVASF 895
              +A+     F
Sbjct: 943 LVKEAMDVATKF 954


>gi|224282910|ref|ZP_03646232.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140069|ref|ZP_07802262.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132579|gb|EFR50196.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 892

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/922 (34%), Positives = 492/922 (53%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P ++ +
Sbjct: 1   MRTSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQPEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  +E  N + +        L + +IDTG GL
Sbjct: 175 VDRGPEY-GKDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+EQ++G KY  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG TEP++ HLLP     M ++YPEL +    + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E+   E++ F +TLD G+ +LD  +  +    D +++GD AF L+DT+G P+++  ++  
Sbjct: 354 ESAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMSEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                     V  I+Q+G+  V    +   VEV+ D+TPFYAEA
Sbjct: 471 ---------------------SARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D    L++ DVQK  + + VH   +  G L     +  +ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLAVGTEVSASIDLARRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VND +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNDRL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T  M  +DAIA GA  L G KY D VRVVS+        S  LCGGTHV   G
Sbjct: 630 RDNLIVTTTEMKFDDAIALGAMHLFGEKYGDVVRVVSIGE---DGWSRELCGGTHVDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVNTL 746

Query: 764 WEEYRKLQLIHAKR-KLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + QL          +    A V   +  +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTVMDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G+S++ K  V +   E        A DL R ++K+LGGGG GG+P
Sbjct: 807 RAQLGEDAPVVVALAGVSEDDKPMVAVATNEAARKNGIKAGDLVRGASKMLGGGG-GGKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG + ++ D+A+  + +
Sbjct: 866 DFAQGGGSDASRIDEALKALEA 887


>gi|328772364|gb|EGF82402.1| hypothetical protein BATDEDRAFT_32863 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 965

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/979 (32%), Positives = 472/979 (48%), Gaps = 107/979 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
           +S +R TF+++F+++GH  + SSS IP  DPTLMF NSGM  FK IF G   P       
Sbjct: 7   LSKVRKTFIDYFEQHGHTHVVSSSTIPHGDPTLMFANSGMNQFKPIFLGTVDPNSDLARL 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VGR   HHTFFEMLGN+SFG YFK  AI++AW++LTK +
Sbjct: 67  SRAANSQKCIRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGNYFKTEAIEMAWEILTKVY 126

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLYIT +        + D EA  LW+   G+  D II  +  DNFW M + GPCG
Sbjct: 127 GLPKDRLYITYFGGDKSLGLESDIEAKHLWRN-IGVEEDHIIPGSVKDNFWEMGDQGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI FD+           + +    +EIWNLVFMQ+ ++  +   +LP   IDTGMGL
Sbjct: 186 PCSEIHFDRI-GGRNAADLVNMDDPDVLEIWNLVFMQYNREVDRSLKLLPNKHIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLRS 281
           ER+ ++LQ+K +NYD D+F  +  A +++TG++          +      +RVI DH+R+
Sbjct: 245 ERLVSILQDKRSNYDTDVFTGIFSAIQKLTGVREYQGRLGEADQDGIDTAYRVIADHVRT 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P+NEGRGYVLRRI+RR   YAR             L+  + TEMG A+PE
Sbjct: 305 LTFAISDGGVPSNEGRGYVLRRILRRGARYARKKFNVPIGCFFSSLVDTVVTEMGDAFPE 364

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397
           + +    ++E L  E+  F KTLDRG  L    L+       ++++G  A++LYDT+G P
Sbjct: 365 ITERVDDLKEILDEEERSFSKTLDRGERLFGEYLAKTKASGGKVISGADAWRLYDTYGFP 424

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +    GL  +D + F Q  +  + R+R  +             ++ E       
Sbjct: 425 VDLTRLMAEENGLT-VDEVEFEQEQKIAKERSRGRNEKETGIVVSLDIHAIGE------- 476

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ---KVEVV 514
                                       + +SS VKA+   G+ VE   S     +  V+
Sbjct: 477 ----------LEANPNVQPTDDQYKYGFDDISSKVKALFVNGKFVESVSSTNHQGRFGVI 526

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D+T FYAE GGQ  DTG    DG      +  +   G  +H   ++ G L  + S++ T
Sbjct: 527 LDKTNFYAEQGGQQFDTGSLTVDGSLEFAIEDVQVFGGYVLHIGYLKYGSLSLDDSIMCT 586

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---------- 624
            D   R  L  NH+ATH+L++ L +++G+ V Q GS ++P+ LRFD +            
Sbjct: 587 YDELRRWPLRNNHTATHVLNYGLRSVIGTIVDQKGSLVSPEKLRFDYSCKVNKCFEYNIY 646

Query: 625 ---KPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVS 680
              K   +AEL  +E   N  IA+N  + T  +        +G  A+ G  Y D VRVVS
Sbjct: 647 SRRKIGLTAELAKVEKITNSFIAKNDIIYTSEVSLALAKSINGLRAVFGEVYPDPVRVVS 706

Query: 681 VE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
           +                   S   CGGTHV  TG+I    I+ +S++  GIRRI  +TG 
Sbjct: 707 IGFPIDEMLKDPSNAKWAETSIEFCGGTHVQRTGDIKRFVIIEDSALAKGIRRIVGVTGD 766

Query: 730 RARSHLMGQDE------------------KLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
            A  +    DE                   LK +   L  S   V+ +   + E +  + 
Sbjct: 767 EALKYQKLADEFEIKLEQLRRIKGALFETTLKEIGKTLDSSVLPVLRK-HSLKETFSAIK 825

Query: 771 ---------QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
                    +     ++    V+           F+S I    ++K L   +  ++  ++
Sbjct: 826 KDFDDKDKARKALESKEAVDTVKSFFEANPEKTVFVSVINQSGNTKALAQAIAHVR-TLK 884

Query: 822 SGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
               ML+ +  E  K +   +V + L+DR   A + A   A  +GG  G G    AQ  G
Sbjct: 885 DKAAMLIAVDPETSKVAHQCIVPQILIDRGLKATEWADAVASKVGGKKG-GSESAAQGAG 943

Query: 880 PNGNKADQAIAGVASFLKK 898
                  +A+    +F+ K
Sbjct: 944 DRAASVQEAVDAATAFIAK 962


>gi|213692473|ref|YP_002323059.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523934|gb|ACJ52681.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458618|dbj|BAJ69239.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 892

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/926 (34%), Positives = 489/926 (52%), Gaps = 64/926 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTADIAKRYLDYFAKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+ QKCVR      D+D VG+T RH TFF+MLGNFS G YFKE AI  AW+LLT      
Sbjct: 60  TSNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTFTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  +E  N + +        L + +IDTG GL
Sbjct: 175 VDRGPEY-GRDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G KY  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P++  LLP     M ++YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVQAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G+ +LD  +    K  D +++G  AF L+DT+G P+++  ++  
Sbjct: 354 EAAYGEEDAFRRTLENGIEILDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+  V        VEV+ D+TPFYAEA
Sbjct: 471 ---------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D    L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T+ M  +DAIA GA  L G KY D VRVVS+        S  LCGGTHV   G
Sbjct: 630 RDNLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNAL 746

Query: 764 WEEYRKLQLIHAKR-KLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + QL          +    A V      +    +   L+  +  +
Sbjct: 747 LAKLKESDRRLASMYESQLAASVPALVADTKDSAAPVKVAVKNVGHFGAVDALRKTVLDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G++++ K  V +   E        A DL R +AKVLGGGG GG+P
Sbjct: 807 RAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGG-GGKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
             AQ GG + +K  +A+  +    +K
Sbjct: 866 DFAQGGGVDASKIGEALEALKHEAQK 891


>gi|325179830|emb|CCA14233.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 1022

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/977 (28%), Positives = 464/977 (47%), Gaps = 104/977 (10%)

Query: 7    IRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            IR TF+ +F+K+    H   PS  +IP +DPTL+F N+GM  FK IF GQ  P +     
Sbjct: 64   IRETFINYFRKHSFHPHTFYPSCPVIPLDDPTLLFINAGMNQFKPIFLGQVDPNHPMSKL 123

Query: 60   -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+  I+++++LLTK +
Sbjct: 124  QRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKQETIEMSFNLLTKVY 183

Query: 119  DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
             +D  RLY T +          DEE   +W K   L + +++     DNFW M + GPCG
Sbjct: 184  QIDAERLYATYFGGDPKQQLLPDEETRAIWLKY--LPSSRVLPFGCKDNFWEMGDIGPCG 241

Query: 171  PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
            PC+EI +D+           + +    IEIWN VF+QF ++N  +   LP   +DTGMG 
Sbjct: 242  PCTEIHYDRLGNRDAAA-LVNADVPDVIEIWNNVFIQFNRENSGKLVPLPNKHVDTGMGF 300

Query: 231  ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281
            ER+A++LQ KT+NYD D+F  L    + +T  +            N  + +RV+ DH+R+
Sbjct: 301  ERLASILQGKTSNYDTDVFTPLFHTIQSITKAEPYEGKLGAEDANNKDMAYRVVADHIRT 360

Query: 282  SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
             +F IADG++P+N+GRGYVLRRI+RRA+ Y +  L   +  +  L+  +   M + +PEL
Sbjct: 361  LTFAIADGVMPSNDGRGYVLRRILRRAVRYGQQFLNAPKGFLNQLVRVVVDMMHNTFPEL 420

Query: 341  IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--------HLGKDEILNGDVAFKLYD 392
               +  +E+ +  E+E FG+TL++G+     ++            +   ++G  AF LYD
Sbjct: 421  KVKQNEVEQAILEEEESFGRTLNKGIEKFRKIVESVQGARDGEKQQAPAISGKDAFFLYD 480

Query: 393  THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
            + G PLD+ Q +    G+  +D+  + + ++ Q  R++             +        
Sbjct: 481  SMGFPLDLTQVMAEEEGMT-VDVEGYGEQMKLQSERSKQDRKKGSGDNARPLVL------ 533

Query: 453  GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ------QGEIVEEAV 506
                    +    +  ++            +    + + V AI        +      A 
Sbjct: 534  --------EAQETNALLELGIPTTNDDAKYEWNKALQAKVVAIFTTTDSSCEFVSAVTAQ 585

Query: 507  SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGI 564
               ++ +V D+T FYA+AGGQ+ DTG    D         D  +   G  +H   +E G 
Sbjct: 586  KHDRIGIVLDRTSFYAQAGGQVYDTGSLEKDQPAGTRFNIDAVESYAGYVLHAGTLESGS 645

Query: 565  LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
            L+    +   +DY  R +++ NH+ TH+L+ AL  +L  +V Q GS +    +RFD T +
Sbjct: 646  LQVGDDISCQVDYDRRSKIAPNHTMTHVLNFALRKVLVKNVDQRGSLVDDVRMRFDFTTN 705

Query: 625  KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY 683
            KP++ ++L+++E+   + I Q L V T+  ++ DA    G  A+ G  Y D VRVVS+  
Sbjct: 706  KPLSPSQLQAVENMCENSIKQELQVFTKNTSQTDARRIQGLRAVFGETYPDTVRVVSIGQ 765

Query: 684  E-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
                             S   CGGTH+ +T +     +  E +I  GIRRI A TGQ A 
Sbjct: 766  MIDPMLKDPENSTWSNFSVEFCGGTHLENTKQARKFVLYEEGAIARGIRRISAYTGQEAL 825

Query: 733  SHLMGQDEKLKSL-----------------------ASFLKVSQGNVVGR-VEEIWEEYR 768
            +      E  K L                       AS + +   + + + +E + +  +
Sbjct: 826  NAEKRGQELQKQLDCIKAMQDSDFIANVTAFRPILDASLISLPLKDHLRKELEVLVDRVK 885

Query: 769  KLQLIHAKRKLQ----LNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSG 823
             L+   A  +        ++ +   +     F+   +    D K  + ++ A+   +  G
Sbjct: 886  TLKKKEAALRAADAITQAIKQVKEAQEKSTKFVVARMQAGTDVKLGREILAAMSNALPEG 945

Query: 824  IIMLVGISKE-KKASVLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              M+     + KK +    V++      + +A      + K + G GGG     A     
Sbjct: 946  SFMVFSTDDDAKKTAAFCQVSQHHADTKQLDARQWVNEAMKPMNGKGGGKSALNANGQAK 1005

Query: 881  NGNKADQAIAGVASFLK 897
              +  ++A+A   S+++
Sbjct: 1006 IMDHIEEAMAIAESYVR 1022


>gi|310287353|ref|YP_003938611.1| Alanyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|309251289|gb|ADO53037.1| Alanyl-tRNA synthetase [Bifidobacterium bifidum S17]
          Length = 892

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/922 (34%), Positives = 491/922 (53%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P ++ +
Sbjct: 1   MRTSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  +E  N + +        L + +IDTG GL
Sbjct: 175 VDRGPEY-GKDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+EQ++G KY  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG TEP++ HLLP     M ++YPEL +    + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E+   E++ F +TLD G+ +LD  +  +    D +++GD AF L+DT+G P+++  ++  
Sbjct: 354 ESAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMSEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                     V  I+Q+G+  V    +   VEV+ D+TPFYAEA
Sbjct: 471 ---------------------SARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D    L++ DVQK  + + VH   +  G L     +  +ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGTEVSASIDLARRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VND +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNDRL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T  M  +DAIA GA  L G KY D VRVVS+        S  LCGGTHV   G
Sbjct: 630 RDNLIVTTTEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVNTL 746

Query: 764 WEEYRKLQLIHAKR-KLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + QL          +    A V   +  +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTVMDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G+S++ K  V +   E        A DL R ++K+LGGGG GG+P
Sbjct: 807 RAQLGEDASVVVALAGVSEDDKPMVAVATNEAARKNGIKAGDLVRGASKMLGGGG-GGKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG + +  D+A+  + +
Sbjct: 866 DFAQGGGSDASCIDEALKALEA 887


>gi|315092869|gb|EFT64845.1| alanyl-tRNA synthetase [Propionibacterium acnes HL060PA1]
          Length = 892

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/926 (32%), Positives = 469/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S    +G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRAFGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VEVV  +
Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGASVSAAEPGAVVEVVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 TTRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++  +  V   +L+++
Sbjct: 745 DRVSKLATDLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|282853869|ref|ZP_06263206.1| alanine--tRNA ligase [Propionibacterium acnes J139]
 gi|282583322|gb|EFB88702.1| alanine--tRNA ligase [Propionibacterium acnes J139]
 gi|314923563|gb|EFS87394.1| alanyl-tRNA synthetase [Propionibacterium acnes HL001PA1]
 gi|315092198|gb|EFT64174.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA4]
 gi|315103610|gb|EFT75586.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA2]
 gi|327327432|gb|EGE69208.1| alanine--tRNA ligase [Propionibacterium acnes HL103PA1]
          Length = 892

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/926 (32%), Positives = 468/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VEVV  +
Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGASVSAAEPGAVVEVVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 TTRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++  +  V   +L+++
Sbjct: 745 DRVSKLATDLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|217967411|ref|YP_002352917.1| alanyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336510|gb|ACK42303.1| alanyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 865

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/908 (34%), Positives = 494/908 (54%), Gaps = 58/908 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  F+++F    H  LPS+SL+P +DPTL+FT +GMVPFK  F GQ  P  + +
Sbjct: 1   MRSSDIRKKFIDYFVSKDHLHLPSASLVPSDDPTLLFTTAGMVPFKPYFLGQGIPPKRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TTVQKC R      D++ VG T RH TF EMLGNFSFG YFK  AI  A++ LTKE  + 
Sbjct: 61  TTVQKCFRT----TDIERVGITPRHLTFLEMLGNFSFGDYFKREAIGFAYEFLTKELGIP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
             +L+I+VY+ED+EA+ +W K  G+  ++I+R+   DNFW     TGPCGPCSEI++D G
Sbjct: 117 ISKLWISVYEEDDEAYDIWNKEIGIPKERIVRLGKEDNFWGPPGPTGPCGPCSEIYYDFG 176

Query: 181 EC-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                       +  +R++EIWNLVFM +    + +   LP+ +IDTGMGLER+ TV++ 
Sbjct: 177 PKSKDEEDCKPGDPCDRFMEIWNLVFMAYYMDEEGKLSPLPQKNIDTGMGLERITTVVEG 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            +N ++ DLF  +I+   ++             R+I DH+R  +FL+ DG++P NEGRGY
Sbjct: 237 VSNVFETDLFVPIIEEIRKIVKDSDSVTE----RLISDHIRGITFLMGDGVVPTNEGRGY 292

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR++  A   G  +P +  L+P +   M  AYP+LI+ K  I++ L  E+++F 
Sbjct: 293 VLRRLIRRSLRRAYKHGIVKPFLYKLVPIVVDIMKDAYPDLIEKKDYIQKVLIKEEDQFL 352

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LL+         + + G+ AFKLYDT+G P+++ ++I    G   +D+  FN
Sbjct: 353 RTLEQGLSLLEDYFRKAP-SKTVGGEFAFKLYDTYGFPIELTKEIAEEEGF-VVDVDGFN 410

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFS---LKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           + +EEQR +ARA        +   +      L +    ++F+GY++L             
Sbjct: 411 KYMEEQREKARASMEAKLEESFISLSDDEVYLMKSLPKSEFVGYEVLES----------- 459

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S V      G+  ++  +G++V  + D+TPFY E GGQ+ DTG    
Sbjct: 460 ------------ESKVL-FFIGGKHGKKISNGEEVYFLMDKTPFYPEGGGQVSDTGKVYN 506

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             + + + +V++  E   +H   V +G       +   +D + R     +H+ATHLLH A
Sbjct: 507 SEVEVMVLEVKRLGEDFIIHRGKVLKGEFEEGQIVRAEVDKEKRYHTMRHHTATHLLHAA 566

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG+HV Q+GS ++P+ LRFD TH  P+T  +LK IE  VN+ I  N  V     N 
Sbjct: 567 LREYLGTHVMQSGSLVSPEFLRFDFTHHSPLTYEDLKIIERKVNENILANHKVEKFWTNL 626

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A   GA AL   KY   VR++ +        S  LCGGTHV  TGEI   YIV E  I
Sbjct: 627 EEAKRMGAIALFTEKYQKNVRIIKI-----NNVSMELCGGTHVDCTGEIGSFYIVKEEGI 681

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +GIRRI A+ G +A      ++E L  ++  LK S   +  ++E++ +E ++ +     
Sbjct: 682 GSGIRRIFAVCGLKAWEFQKRREEILNKISFVLKSSPDEIYVKLEKLIDEMKEKEKKIKD 741

Query: 777 RKLQLNVEDLS--CHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + ++  ++L    +KI    + +F+   + +++++ +K + D L+ K  + +IM+    
Sbjct: 742 LEERIIEKELEVLANKIENWGEFSFICTYV-DMENEAIKKLGDHLKSKNDN-LIMVFFKP 799

Query: 832 KEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            + K    I+V++ + L    A  +  +  +    G GGG+  +AQ   P  +     I 
Sbjct: 800 SDNKLLGTIMVSKKVNLKGITAKKIVEIIGERFN-GKGGGKDTLAQISLPKTD-----IE 853

Query: 891 GVASFLKK 898
            +   LK+
Sbjct: 854 DIKRALKE 861


>gi|313791987|gb|EFS40088.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA1]
 gi|313802063|gb|EFS43297.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA2]
 gi|313838884|gb|EFS76598.1| alanyl-tRNA synthetase [Propionibacterium acnes HL086PA1]
 gi|314962643|gb|EFT06743.1| alanyl-tRNA synthetase [Propionibacterium acnes HL082PA1]
 gi|315077859|gb|EFT49910.1| alanyl-tRNA synthetase [Propionibacterium acnes HL053PA2]
 gi|327453294|gb|EGE99948.1| alanyl-tRNA synthetase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/926 (32%), Positives = 466/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ    G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQCPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|302670582|ref|YP_003830542.1| alanyl-tRNA synthetase AlaS [Butyrivibrio proteoclasticus B316]
 gi|302395055|gb|ADL33960.1| alanyl-tRNA synthetase AlaS [Butyrivibrio proteoclasticus B316]
          Length = 884

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/916 (32%), Positives = 465/916 (50%), Gaps = 57/916 (6%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M       +R  + +F++  GH    + SL+      +MF  +GM P      G++ P+ 
Sbjct: 1   MKQFTAQELREAWKQFYKDRGHVDCGAVSLVSDGSTGVMFNVAGMQPLMPYLLGKKHPMG 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +  VQ CVR     ND+D+VG    H TFFEM+G++S G YFK+   Q +++LLT+ F
Sbjct: 61  TRLCNVQGCVRT----NDIDSVG-DKSHGTFFEMMGSWSLGDYFKKERCQWSFELLTQLF 115

Query: 119 DLDQRRLYITVYDED-----EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             D   L  TV+  D     +E    ++  SG   + I  +   DN+W + E GPCGP S
Sbjct: 116 GFDADHLAATVFAGDENAPRDEEGAKYRIESGFKPENIYYLPAEDNWWGL-EYGPCGPDS 174

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E+F+ +     G   G      +Y EI N VFMQ+E+ +      L + ++DTG GLER+
Sbjct: 175 EMFYVKDMPDCGPNCGPGCHCGKYTEIGNDVFMQYEKHHDGHLTPLTQKNVDTGWGLERI 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
              L    + Y IDL   +I   E+ +G+KYE +     + R++ DH R+S  LI D   
Sbjct: 235 LAFLNGVDDVYKIDLHAPVIAYIEKESGLKYESDEKTTRSMRILADHTRTSVMLIGDEAK 294

Query: 292 --PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
             P+N G GY+LRR++RRA+ +AR LG  +  ++ +      E   +Y  L + +  +  
Sbjct: 295 LLPSNTGAGYILRRLIRRAVRHARTLGLNKDQILGVATIYIDEYSESYENLAKNRKFVLT 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            L  E  RF  TL+ G+     +L        + + G  AF LYDT G P+++  ++   
Sbjct: 355 ELEREITRFESTLENGMKEFRKILDKTSAAGKKEIEGKDAFFLYDTFGFPVELTVELADE 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G   +D   F  ++EEQ+ +AR +     + +T    F   ++  AT+F+GY+ L    
Sbjct: 415 EGFT-VDEEGFKASMEEQKQKARENQNFSANLSTGTGLFDNLDESVATEFLGYEKLE--- 470

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                   V  I     +V E   GQ+  ++ D+T FY   GGQ
Sbjct: 471 --------------------CDGTVAVIAGADALVTELTEGQQGTIITDKTTFYGTMGGQ 510

Query: 528 LGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           +GD G  +G    + ++T+  K A G   H   V  G  +    + L++D +NR +   N
Sbjct: 511 VGDIGEILGSNGAKFEVTEAVKVAGGRTAHVGKVVSGSFKVSDKVTLSVDAENRAKTCRN 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLL  AL  +LG  V Q GS   PD  RFD ++ + +T+ E+K +ED VN  I + 
Sbjct: 571 HSATHLLQKALQMVLGDGVEQAGSYQDPDKTRFDFSYHQAMTADEIKKVEDIVNSKILEA 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPVVT+ M+ EDA  +GA AL G KY + VRVV++     G  S  LCGGTHV++T  I 
Sbjct: 631 LPVVTKEMSIEDAKKTGAMALFGEKYGETVRVVNM-----GDFSIELCGGTHVANTSHIG 685

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  I+SES + AG+RRIEA+TG  AR++    +  L   A  LK +  ++V  ++++ EE
Sbjct: 686 LFKILSESGVAAGVRRIEALTGDNARAYYKNVEANLGEAAKTLKTTPADLVDHIKKLQEE 745

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+  +   K +     L        +I  V  ++  +  VD   L+ + D ++ K+ 
Sbjct: 746 LKNLRSENESLKSKEAQAALGDVMDQVLEIKGVKLLATSVKGVDMNGLRDLGDQMKTKLG 805

Query: 822 SGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            G+++L+    + K +++ + T+  +    +A +L +  A  +GGGG GGRP+MAQ+GG 
Sbjct: 806 EGVVVLIS-EADGKVNLVTMATDGAMAKGAHAGNLVKAIAPKVGGGG-GGRPNMAQAGGK 863

Query: 881 NGNKADQAIAGVASFL 896
           N      A+A   + L
Sbjct: 864 NPAGIQDALAEAKTVL 879


>gi|208435135|ref|YP_002266801.1| alanyl-tRNA synthetase [Helicobacter pylori G27]
 gi|208433064|gb|ACI27935.1| alanyl-tRNA synthetase [Helicobacter pylori G27]
          Length = 817

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/861 (35%), Positives = 465/861 (54%), Gaps = 56/861 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVY-QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN 95
           +FTN+GMV FK+IFTG          T+ Q C+RAGGKHNDL+NVG T RHHT FEMLGN
Sbjct: 2   LFTNAGMVQFKDIFTGMVPRPSIPRATSSQLCMRAGGKHNDLENVGYTARHHTLFEMLGN 61

Query: 96  FSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT 155
           FSFG YFKE  I  AW+ +TK      + LYI+V+++D+EA KLW+K   +  D+I ++ 
Sbjct: 62  FSFGDYFKEETILFAWEFVTKNLGFKPKDLYISVHEKDDEAVKLWEKF--VPVDRIKKMG 119

Query: 156 TNDNFWSMAETGPCGPCSEIFFDQGE-CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
             DNFW M ++GPCGPCSEI+ DQGE    G       EG+R++EIWNLVFMQ+E+ N  
Sbjct: 120 DKDNFWQMGDSGPCGPCSEIYIDQGEKHFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDG 179

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRV 274
               LPK SIDTGMGLER+  +L+ K NN+D  LF  L+    ++T + Y      + RV
Sbjct: 180 VLSPLPKPSIDTGMGLERVQALLEHKLNNFDSSLFAPLMGEISELTSLDYASEFQPSFRV 239

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334
           + DH R+ +FL+A G+    EGRGYVLRRI+RRA+ +  L+G  E  +  ++  +C +  
Sbjct: 240 VADHARAVAFLLAQGVHFNKEGRGYVLRRILRRALRHGYLMGLKEAFLYKVVGVVCEQFS 299

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394
           + +  L ++K ++ +    E+ERF +TL+ G+ L +  L HL +++I +G +AFKLYDT 
Sbjct: 300 NTHAYLKESKEMVMKECFEEEERFLETLESGMELFNLSLKHLNENKIFDGKIAFKLYDTF 359

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G PLD+  D+L + G   +D+  F   ++EQ  R++A   G  +      + ++   Y  
Sbjct: 360 GFPLDLTNDMLRSHGAC-VDMQGFELCMQEQVKRSKASWKGKQNNA---DFSAILNAYAP 415

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEV 513
            +F+GY+                            + V        + + +A   Q+V V
Sbjct: 416 NEFVGYETTE-----------------------CPAKVLGFFDSDFKEITDANPNQEVWV 452

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + ++TPFYAE GG +GD G  + D     I    K   G+      +++ + + +  +  
Sbjct: 453 LLEKTPFYAEGGGAIGDRGTLLKDNEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQ 512

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R +++ +HSATHLL  AL  +LGSHVSQ GS +    LRFD +H+K +   EL+
Sbjct: 513 VSDE--RLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELE 570

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +ED VN  I ++L      M    A   GA AL   KY + VRVVS +       S  L
Sbjct: 571 KVEDLVNAQIFKHLKSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKE-----ASIEL 625

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG HV +TG I    IV ES + +G+RRIEA+ G+        ++++LK+  + LK + 
Sbjct: 626 CGGIHVENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLKNN- 684

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
            +V+  + ++ E  +  Q             DL   KI  V+ +  ++ + D   +K ++
Sbjct: 685 -DVIAGINKLKESVKNSQK-------APVSMDLPIEKIHGVDLVVGVVEQGD---IKEMI 733

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D L+ K +  + M+    + ++ ++   V         A   A   A++L GG GGGR  
Sbjct: 734 DRLKSKHERLLAMVF-KKENERITLACGVKNAP---IKANAWANEVAQIL-GGKGGGRDD 788

Query: 874 MAQSGGPNGNKADQAIAGVAS 894
            A +GG +      A+    +
Sbjct: 789 FASAGGKDIENLQAALNLAKN 809


>gi|295130736|ref|YP_003581399.1| alanine--tRNA ligase [Propionibacterium acnes SK137]
 gi|291377126|gb|ADE00981.1| alanine--tRNA ligase [Propionibacterium acnes SK137]
 gi|313771981|gb|EFS37947.1| alanyl-tRNA synthetase [Propionibacterium acnes HL074PA1]
 gi|313810181|gb|EFS47902.1| alanyl-tRNA synthetase [Propionibacterium acnes HL083PA1]
 gi|313830512|gb|EFS68226.1| alanyl-tRNA synthetase [Propionibacterium acnes HL007PA1]
 gi|313833548|gb|EFS71262.1| alanyl-tRNA synthetase [Propionibacterium acnes HL056PA1]
 gi|314973512|gb|EFT17608.1| alanyl-tRNA synthetase [Propionibacterium acnes HL053PA1]
 gi|314976192|gb|EFT20287.1| alanyl-tRNA synthetase [Propionibacterium acnes HL045PA1]
 gi|314983786|gb|EFT27878.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA1]
 gi|315096059|gb|EFT68035.1| alanyl-tRNA synthetase [Propionibacterium acnes HL038PA1]
 gi|327326339|gb|EGE68129.1| alanine--tRNA ligase [Propionibacterium acnes HL096PA2]
 gi|327445767|gb|EGE92421.1| alanyl-tRNA synthetase [Propionibacterium acnes HL043PA2]
 gi|327448250|gb|EGE94904.1| alanyl-tRNA synthetase [Propionibacterium acnes HL043PA1]
 gi|328760699|gb|EGF74265.1| alanine--tRNA ligase [Propionibacterium acnes HL099PA1]
          Length = 892

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/926 (32%), Positives = 466/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKSAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L +     + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKAGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|164427876|ref|XP_965697.2| alanyl-tRNA synthetase [Neurospora crassa OR74A]
 gi|38567140|emb|CAE76435.1| probable alanine--tRNA ligase, cytosolic [Neurospora crassa]
 gi|157071919|gb|EAA36461.2| alanyl-tRNA synthetase [Neurospora crassa OR74A]
          Length = 961

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/965 (32%), Positives = 466/965 (48%), Gaps = 93/965 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQA 60
            +R TFL+FF + GH ++PSSS++P NDPTL+FTN+GM  FK IF G     ++    + 
Sbjct: 11  QVRKTFLDFFAERGHNVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTEDMAQLKR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK + L
Sbjct: 71  AVDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAWSWELLTKVYGL 130

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D +RLY+T ++         D EA  LW +  G+  D II     DNFW M + GPCGPC
Sbjct: 131 DPQRLYVTYFEGSPDLGLEPDLEAKNLWLE-VGVPEDHIIPGNMKDNFWEMGDQGPCGPC 189

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SEI +D+           + +    +E+WN+VF+QF++Q  +    LP   IDTGMG ER
Sbjct: 190 SEIHYDKVGGGRNAAHLVNMDDPLVVEVWNIVFIQFDRQADKSLKSLPAKHIDTGMGFER 249

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSS 283
           + + LQ+KT+NY  D+F  L    ++V          G          +RVI DH+R  S
Sbjct: 250 LVSALQDKTSNYATDIFTPLFTKIQEVTGAREYTDKYGKDDVDGIDTAYRVIADHIRLLS 309

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341
           F IADG  P N GRGYV+RR++RR + YAR     E       +LPAL  +MG  +PEL+
Sbjct: 310 FAIADGAAPNNVGRGYVVRRVLRRGVRYARKYFNAEIGTFFSKILPALVEQMGEQFPELV 369

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +  I+E L  E+  F  TLDRG    +    L+    ++ L+G   ++LYDT G P D
Sbjct: 370 KKQTDIKEILDEEEVAFAVTLDRGEKQFEKYAALAIKSGEKKLSGADVWRLYDTFGFPED 429

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + + +   RGL   +           R +AR  S  +                   +F  
Sbjct: 430 LTKLMAEERGLTIDEAEVNEA-----REKAREASKAVKEAVQ--------------EFAK 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516
            ++ + ++                L       V+ I    E ++      +   + ++ D
Sbjct: 471 LNVHQIAELETALNIPRPNSDAKFLKGDTKGKVQLIFNGKEFLKSSKDLPAKTPLGLLLD 530

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            T FYAE+GGQ+ DTG  I DG+        ++  G  VH+  +E G L     +V   D
Sbjct: 531 NTNFYAESGGQVADTGRIIIDGVAEFKVLDVQEYGGYIVHNGFLEYGELTEGDEVVCEYD 590

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R+ +  NH+ TH+L+H+L  +LG  ++Q GS +  D LRFD +H   I+  ++K IE
Sbjct: 591 ELRRQPIRNNHTGTHILNHSLREVLGDEINQKGSLVDQDKLRFDFSHKAAISLEDIKKIE 650

Query: 637 DNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YE 684
           D  N  I QNL   ++ +         G  A+ G  Y + VRVVS+              
Sbjct: 651 DLSNHYIRQNLKAYSKDVDLDLAREIEGVRAVFGETYPNPVRVVSIGMEVDELLKNPKNP 710

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ--------------- 729
           +    S   CGGTHV +TG I  L IV ES I  GIRRI A TG+               
Sbjct: 711 EWRKISVEFCGGTHVENTGLIKDLIIVEESGIAKGIRRIVAYTGEGAHQAQREAQVFNEK 770

Query: 730 ----RARSHLMGQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
                A ++   +  ++K+ A  L       +++  +  R  +I +E    Q    K + 
Sbjct: 771 LNHINALAYGPQKAAEIKAAAVELDGLTISVLTKEELRTRFTKIQKEVVDEQKKRQKAES 830

Query: 780 QLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +  ++ ++ H   D N     F+ H+    ++K +  V+   + K +   + +   SK+ 
Sbjct: 831 KTALDTVASHFQKDENKESKVFVGHLPISANAKAISDVITYYKTKDKERSVYVFAGSKDD 890

Query: 835 KASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           +    + V   L      A       + V+GG  GG  P   Q  G    K ++A+    
Sbjct: 891 QVMHGVYVGTALSSKGVTAEQWTSAVSAVIGGKTGGKEPSR-QGAGAEPEKLEEAVKKAE 949

Query: 894 SFLKK 898
            +L +
Sbjct: 950 EWLSE 954


>gi|50842658|ref|YP_055885.1| alanyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289428540|ref|ZP_06430224.1| alanine--tRNA ligase [Propionibacterium acnes J165]
 gi|59798519|sp|Q6A8I8|SYA_PROAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50840260|gb|AAT82927.1| alanyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289158234|gb|EFD06453.1| alanine--tRNA ligase [Propionibacterium acnes J165]
 gi|313807674|gb|EFS46161.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA2]
 gi|313818711|gb|EFS56425.1| alanyl-tRNA synthetase [Propionibacterium acnes HL046PA2]
 gi|313820481|gb|EFS58195.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA1]
 gi|313822713|gb|EFS60427.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA2]
 gi|313825353|gb|EFS63067.1| alanyl-tRNA synthetase [Propionibacterium acnes HL063PA1]
 gi|314925090|gb|EFS88921.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA3]
 gi|314960373|gb|EFT04475.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA2]
 gi|314978647|gb|EFT22741.1| alanyl-tRNA synthetase [Propionibacterium acnes HL072PA2]
 gi|314987967|gb|EFT32058.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA2]
 gi|314989777|gb|EFT33868.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA3]
 gi|315084155|gb|EFT56131.1| alanyl-tRNA synthetase [Propionibacterium acnes HL027PA2]
 gi|315085498|gb|EFT57474.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA3]
 gi|315088445|gb|EFT60421.1| alanyl-tRNA synthetase [Propionibacterium acnes HL072PA1]
 gi|315105744|gb|EFT77720.1| alanyl-tRNA synthetase [Propionibacterium acnes HL030PA1]
 gi|327331786|gb|EGE73523.1| alanine--tRNA ligase [Propionibacterium acnes HL096PA3]
 gi|328753318|gb|EGF66934.1| alanyl-tRNA synthetase [Propionibacterium acnes HL020PA1]
          Length = 892

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|289425435|ref|ZP_06427212.1| alanine--tRNA ligase [Propionibacterium acnes SK187]
 gi|289154413|gb|EFD03101.1| alanine--tRNA ligase [Propionibacterium acnes SK187]
          Length = 913

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 22  MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 80

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 81  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 136

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 137 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 195

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 196 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 254

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 255 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 314

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 315 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 374

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 375 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 434

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 435 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 493

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 494 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 530

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 531 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 589

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 590 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 649

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 650 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 705

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 706 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 765

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++  +  V   +L+++
Sbjct: 766 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 825

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 826 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 884

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 885 KDDMAQGAGSDPTGIDAALRAVNTEL 910


>gi|327330410|gb|EGE72159.1| alanine--tRNA ligase [Propionibacterium acnes HL097PA1]
          Length = 892

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/926 (32%), Positives = 466/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VEVV  +
Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEVVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA   GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKVMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|311064194|ref|YP_003970919.1| alanyl-tRNA synthetase AlaS [Bifidobacterium bifidum PRL2010]
 gi|310866513|gb|ADP35882.1| AlaS Alanyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
          Length = 892

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/922 (34%), Positives = 492/922 (53%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P ++ +
Sbjct: 1   MRTSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  +E  N + +        L + +IDTG GL
Sbjct: 175 VDRGPEY-GKDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+EQ++G KY  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG TEP++ HLLP     M ++YPEL +    + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E+   E++ F +TLD G+ +LD  +  +    D +++GD AF L+DT+G P+++  ++  
Sbjct: 354 ESAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMSEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                     V  I+Q+G+  V    +   VEV+ D+TPFYAEA
Sbjct: 471 ---------------------SARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D    L++ DVQK  + + VH   +  G L     +  +ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLAVGTEVSASIDLARRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VND +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNDRL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T  M  +DAIA GA  L G KY D VRVVS+        S  LCGGTHV   G
Sbjct: 630 RDNLIVTTTEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVNTL 746

Query: 764 WEEYRKLQLIHAKR-KLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + QL          +    A V   +  +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTVMDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G+S++ K  V +   E        A DL R ++K+LGGGG GG+P
Sbjct: 807 RAQLGEDAPVVVALAGVSEDDKPMVAVATNEVARKNGIKAGDLVRGASKMLGGGG-GGKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG + ++ D+A+  + +
Sbjct: 866 DFAQGGGSDASRIDEALKALEA 887


>gi|255948530|ref|XP_002565032.1| Pc22g10240 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592049|emb|CAP98312.1| Pc22g10240 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 958

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/969 (31%), Positives = 467/969 (48%), Gaps = 95/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R TFL++F++NGH  +PSS + P +DPTL+FTN+GM  FK+IF G          
Sbjct: 9   TAQRVRDTFLDYFKQNGHTFVPSSPVAPLSDPTLLFTNAGMNQFKSIFLGTVDASSDFGK 68

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +  T  QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 69  MKRATNSQKCLRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 128

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY+T ++         D EA +LWK   G+    I+     DNFW M + GPC
Sbjct: 129 YGLDPDRLYVTYFEGNEAGGLEPDLEAKELWKS-VGVPESHILPGDMKDNFWEMGDQGPC 187

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           +E+    +EIWN VF+Q+ ++       LP   +DTGMG
Sbjct: 188 GPCSEVHYDRI-GGRNAAHLVNEDDPNVLEIWNNVFIQYNREPDSSLRSLPNKHVDTGMG 246

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
            ER+ ++LQ K +NYD D+F  + QA +            G          +RV+ DH+R
Sbjct: 247 FERLVSILQNKPSNYDTDVFTPIFQAIQNTTGAREYRGQFGADDADGIDTAYRVVADHVR 306

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           +  F I+DG++P NEGRGYV+RR++RR   YAR     +       L+P +  ++G  +P
Sbjct: 307 TLMFAISDGVIPNNEGRGYVIRRVLRRGARYARKYFQVDIGNFFAKLVPTVVDQLGEMFP 366

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           EL + +  + E L  E+  F KTLDRG    +     + +   ++L+G   ++LYDT G 
Sbjct: 367 ELKRKQQDVVEILDEEELSFAKTLDRGERQFEQYAQQAKVKGTDMLHGADVWRLYDTFGF 426

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL   D+          R +A+  S G        +   + +      
Sbjct: 427 PVDLTRIMAEERGLRIDDVEFEEA-----RLKAKEASKGQKKAAENTVKLDVHDLG---- 477

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEV 513
                     K  K +        P      +++ VKAI       +  ++   G ++ +
Sbjct: 478 ----------KLEKMNDVQKTDDSPKFGRGNITAHVKAIYHGKTFHKSTDDVPEGAQLGI 527

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D T FYAE GGQ  DTG  I DG         +   G  +H   ++ G      S++ 
Sbjct: 528 ILDCTNFYAEQGGQENDTGKIIIDGQAELEVGDVQSYAGYVLHTGFMKYGSFTVGNSVIC 587

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   I+ AEL+
Sbjct: 588 EYDELRRWPIRNNHTGTHILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKTAISDAELE 647

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
           +IE    + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV           
Sbjct: 648 NIEAKSTEYIRQNCAVYSQELPLATAQQISGVRAVFGETYPDPVRVVSVGVELEEILKNV 707

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR------SHL 735
                   S   CGGTHV  TG+I  L I+ ES I  G+RRI A+TG+ A          
Sbjct: 708 KDPRWQEVSIEFCGGTHVQKTGDIKDLIILEESGIAKGVRRIIAVTGEDAHEVQRVAEEF 767

Query: 736 MGQDEKLKSL---------ASFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAK 776
             + ++L +L         A  ++V    +V           R  +I ++    Q    K
Sbjct: 768 GQRLDRLNALPLGSEKEQEAKQVQVDLNQLVISAVQKAKFRERFAKINKQVLDGQKAQQK 827

Query: 777 RKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGI 830
            + +  VE ++              +  +    ++K +   ++ ++ K+    + +L   
Sbjct: 828 LESKKAVEAITSYFETPENQDKSWLVVQLPISANAKAVSESLNHVKSKMQGKSVYLLAAD 887

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S++ + S    +++ L D   +A D A + +  +GG  GG  P      G N +K ++AI
Sbjct: 888 SEQGRVSHGCYISQGLSDQGASASDWAAVVSGAVGGKAGGKGPTS-IGNGTNTDKVEEAI 946

Query: 890 AGVASFLKK 898
           +  A +L K
Sbjct: 947 SLAADYLNK 955


>gi|296806327|ref|XP_002843973.1| alanyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238845275|gb|EEQ34937.1| alanyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 963

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/962 (30%), Positives = 464/962 (48%), Gaps = 94/962 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTIDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA  +W+   G+  D I+     DNFW M + GPCGPCS
Sbjct: 143 PERLYVTYFEGNEGAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 201

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   IDTG+G ER+
Sbjct: 202 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNKHIDTGLGYERL 260

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSSF 284
            ++LQ+K++NYD D+F  L  A + +          G +        +RV+ DHLR+ +F
Sbjct: 261 VSILQDKSSNYDTDVFTPLFTAIQNITGARRYTGKFGAEDTDGIDTAYRVVADHLRTLTF 320

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ +
Sbjct: 321 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLKVEIGSFFSKLVPALVEQMGDMFPEIKR 380

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG    +       +     L+G   ++LYDT G P+D+
Sbjct: 381 KQNDVMEILDEEEVSFAKTLDRGERQFEYYAQQALEAGAGKLHGADVWRLYDTFGFPVDL 440

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L   D           R +A+  S G     ++ +  ++            
Sbjct: 441 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKTASDLLKLTVH----------- 484

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   ++++               + + +KAI    E+++      + +++ ++ D+
Sbjct: 485 ----TLSTLEKNGVPKTNDDAKFGKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 540

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  I DG         +   G  +H   ++ G      S++   D 
Sbjct: 541 TNFYAEQGGQEYDTGKIIIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 600

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   ++ ++L+ IE 
Sbjct: 601 LRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAVSDSDLEKIEA 660

Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V    +        +G  A+ G  Y D VRVVSV               
Sbjct: 661 KSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 720

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A              
Sbjct: 721 WEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRVAREFGERL 780

Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780
                      +D ++KSL   L     + V + +      +I ++    Q    K +++
Sbjct: 781 NRFEKMAAGPERDAEVKSLQVDLNQLTISAVEKAKYRNQFTQIHKKITDAQKAAQKAEVK 840

Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             ++ +S          + +  +    + K +   +  ++ K+    + +       K +
Sbjct: 841 TAIDAISSYFEQNKDSQSLVIKLPISANQKAISESLAHVKSKLSGKALYVFAADT-SKVA 899

Query: 838 VLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               VT DL  +  +A + A   + ++ GG  GG+  +A   G   NK D+A+     +L
Sbjct: 900 HGCYVTPDLTAKGASANEWASAVSGIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYL 958

Query: 897 KK 898
           +K
Sbjct: 959 EK 960


>gi|66816759|ref|XP_642382.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|74856597|sp|Q54Y20|SYAC_DICDI RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|60470104|gb|EAL68084.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 946

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/979 (29%), Positives = 452/979 (46%), Gaps = 118/979 (12%)

Query: 2   SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
            +V+ IR TF++FF++   H  +PSS++IP +DPTL+F N+GM  FK IF GQ  P    
Sbjct: 1   MDVNQIRKTFIDFFREKCEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQ 60

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT
Sbjct: 61  AKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAITWAWELLT 120

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + LD+ RLY+T +        + D EA  LW +   L  ++++     +NFW M + G
Sbjct: 121 EVYKLDKERLYVTYFRGDPEKGLEADLEAKNLWLQY--LPEERVLPFGMKENFWEMGDQG 178

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSEI +D+ E   G     + +    IEIWNLVF+Q+ ++  +    LP+  +DTG
Sbjct: 179 PCGPCSEIHYDKVEGRDG-ASFVNADDPTLIEIWNLVFIQYNREADKSLRPLPQKHVDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVD 277
           MGLER+ +++Q+   NYD D+F  +  A ++VTG           +      + +RVI D
Sbjct: 238 MGLERLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAEDTQQVDMAYRVIAD 297

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ +F IADG  P+ +GRG VLRRI+RRA+ Y  + L         L+  +    G  
Sbjct: 298 HIRTLTFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDVVIANFGEF 357

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +    I+  L  E++ F KTL++G+V  + ++     +  L+ + A+ L   +G 
Sbjct: 358 FPELRKKPEHIKMVLTREEDMFNKTLEKGIVEFEKMIKK-SVNNTLSAENAYFLSTCYGF 416

Query: 397 PLDIMQDILCARGLAGIDIISF---NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           P+D+   +   +                 E  R R +   + L  G     W    +   
Sbjct: 417 PIDLTTIMAEEKNYKVDIKGYEGLCEAQSEIDRKRQKEKKVELTLGAEANAWLKNNDIKP 476

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
                                           + + S++KAI    E V+ A  G  + V
Sbjct: 477 T-----------------------DDSFKYKQHEIQSVIKAIWNGKEFVDTAPKGTLIGV 513

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK----AEGIFVHHAIVERGILRTEM 569
           V + + FYAE GGQ+ D G       +    DV+         + + +   E   L+   
Sbjct: 514 VLENSNFYAEQGGQIYDIGQLSFIDDQKTAFDVKDCKVFGGYVLHIGYLSYECDSLKVGD 573

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + LT+DY  R  +  NH++TH++++AL  ILG  + Q GS +     RFD +  + IT 
Sbjct: 574 RVELTVDYTRRSPIMSNHTSTHMVNYALKNILGDGIDQRGSFVDAQRFRFDFSFGRAITK 633

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR----------- 677
            EL  I+  VND I + L V  + +    A   +G  A+ G  Y D VR           
Sbjct: 634 DELIKIDQIVNDQIFKQLDVHAKEVGLASAKKINGLRAVFGEVYPDPVRVVSVGVPVEQL 693

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           + +    +   +S   CGGTH+S+T +  L  I SE ++ AG+RRI A+TG  A S +  
Sbjct: 694 IENPTNPEWANYSIEFCGGTHLSNTKQAELFTITSEETLGAGVRRIVAVTGSEAASAIEL 753

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWE--------------------EYRKLQLIHAK- 776
             E      + LK+S   +   +  + +                    E + LQ    K 
Sbjct: 754 NKELEVRFNNALKLSGSELAKEIVSLLDLLKVVTISASVRMNLVETLKEVQALQRKQVKE 813

Query: 777 ------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--LKSVMDALQKKIQSGIIMLV 828
                 ++ Q  +E  S         +   +   +S    +   +  +Q K     IML+
Sbjct: 814 QETILAQQAQTYLEKTSEELAKSQPKVFVDLVNFNSNTPLITETIKKIQTKSPMTAIMLI 873

Query: 829 GISKE-KKASVLIVVTED--LLDRFNAVDLARLSAKVLG-------GGGGGGRPHMAQSG 878
              +E  K + + +V +D  +     A        +VLG                +AQ  
Sbjct: 874 SPDEEKGKVTCIGIVPKDSEISKTLTANAWVVKVTEVLGGKGGGKV--------DVAQGV 925

Query: 879 GPNGNKADQAIAGVASFLK 897
           G   +K D+AI     F  
Sbjct: 926 GSKLDKIDEAILVSREFAN 944


>gi|6176440|gb|AAF05592.1|AF188717_1 alanyl-tRNA synthetase [Dictyostelium discoideum]
          Length = 946

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/979 (29%), Positives = 452/979 (46%), Gaps = 118/979 (12%)

Query: 2   SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
            +V+ IR TF++FF++   H  +PSS++IP +DPTL+F N+GM  FK IF GQ  P    
Sbjct: 1   MDVNQIRKTFIDFFREKYEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQ 60

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT
Sbjct: 61  AKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAITWAWELLT 120

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + LD+ RLY+T +        + D EA  LW +   L  ++++     +NFW M + G
Sbjct: 121 EVYKLDKERLYVTYFRGDPEKGLEADLEAKNLWLQY--LPEERVLPFGMKENFWEMGDQG 178

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSEI +D+ E   G     + +    IEIWNLVF+Q+ ++  +    LP+  +DTG
Sbjct: 179 PCGPCSEIHYDKVEGRDG-ASFVNADDPTLIEIWNLVFIQYNREADKSLRPLPQKHVDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVD 277
           MGLER+ +++Q+   NYD D+F  +  A ++VTG           +      + +RVI D
Sbjct: 238 MGLERLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAEDTQQVDMAYRVIAD 297

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ +F IADG  P+ +GRG VLRRI+RRA+ Y  + L         L+  +    G  
Sbjct: 298 HIRTLTFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPTGFFSKLVDVVIANFGEF 357

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +    I+  L  E++ F KTL++G+V  + ++     +  L+ + A+ L   +G 
Sbjct: 358 FPELRKKPEHIKMVLTREEDMFNKTLEKGIVEFEKMIKK-SVNNTLSAENAYFLSTCYGF 416

Query: 397 PLDIMQDILCARGLAGIDIISF---NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           P+D+   +   +                 E  R R +   + L  G     W    +   
Sbjct: 417 PIDLTTIMAEEKNYKVDIKGYEGLCEAQSEIDRKRQKEKKVELTLGAEANAWLKNNDIKP 476

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
                                           + + S++KAI    E V+ A  G  + V
Sbjct: 477 T-----------------------DDSFKYKQHEIQSVIKAIWNGKEFVDTAPKGTLIGV 513

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK----AEGIFVHHAIVERGILRTEM 569
           V + + FYAE GGQ+ D G       +    DV+         + + +   E   L+   
Sbjct: 514 VLENSNFYAEQGGQIYDIGQLSFIDDQKTAFDVKDCKVFGGYVLHIGYLSYECDSLKVGD 573

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + LT+DY  R  +  NH++TH++++AL  ILG  + Q GS +     RFD +  + IT 
Sbjct: 574 RVELTVDYTRRSPIMSNHTSTHMVNYALKNILGDGIDQRGSFVDAQRFRFDFSFGRAITK 633

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR----------- 677
            EL  I+  VND I + L V  + +    A   +G  A+ G  Y D VR           
Sbjct: 634 DELIKIDQIVNDQIFKQLDVHAKEVGLASAKKINGLRAVFGEVYPDPVRVVSVGVPVEQL 693

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           + +    +   +S   CGGTH+S+T +  L  I SE ++ AG+RRI A+TG  A S +  
Sbjct: 694 IENPTNPEWANYSIEFCGGTHLSNTKQAELFTITSEETLGAGVRRIVAVTGSEAASAIEL 753

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWE--------------------EYRKLQLIHAK- 776
             E      + LK+S   +   +  + +                    E + LQ    K 
Sbjct: 754 NKELEVRFNNALKLSGSELAKEIVSLLDLLKVVTISASVRMNLVETLKEVQALQRKQVKE 813

Query: 777 ------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--LKSVMDALQKKIQSGIIMLV 828
                 ++ Q  +E  S         +   +   +S    +   +  +Q K     IML+
Sbjct: 814 QETILAQQAQTYLEKTSEELAKSQPKVFVDLVNFNSNTPLITETIKKIQTKSPMTAIMLI 873

Query: 829 GISKE-KKASVLIVVTED--LLDRFNAVDLARLSAKVLG-------GGGGGGRPHMAQSG 878
              +E  K + + +V +D  +     A        +VLG                +AQ  
Sbjct: 874 SPDEEKGKVTCIGIVPKDSEISKTLTANAWVVKVTEVLGGKGGGKV--------DVAQGV 925

Query: 879 GPNGNKADQAIAGVASFLK 897
           G   +K D+AI     F  
Sbjct: 926 GSKLDKIDEAILVSREFAN 944


>gi|326491819|dbj|BAJ98134.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1004

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/962 (30%), Positives = 451/962 (46%), Gaps = 96/962 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61
           +R  F++FF+   H   PSS ++P  DPTL+F N+GM  +K +F G   P          
Sbjct: 60  VRQVFIDFFRSRAHTPWPSSPVVPFEDPTLLFANAGMNQYKPVFLGAADPDSPLGRLRRA 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK++AI  AW+LLT+ + L 
Sbjct: 120 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKDQAIAYAWELLTQVYKLP 179

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y T +  D+        ++  +W K   L  ++++     DNFW M +TGPCGPC+
Sbjct: 180 TDRIYATYFGGDDKAGLAPDTDSKDIWLKY--LPTERVLPFGCKDNFWEMGDTGPCGPCT 237

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI FD+           + +    IEIWNLVF+QF ++       LP   +DTGMG ER+
Sbjct: 238 EIHFDRIGNRD-AASLVNNDDPTCIEIWNLVFIQFNREADGTLRSLPAKHVDTGMGFERL 296

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-----------TGMKYEGNNIVNHRVIVDHLRSS 282
            ++LQ K +NYD D+F  L  A  ++            G    G   + +RV+ DH+R+ 
Sbjct: 297 TSILQNKMSNYDTDVFMPLFDAIHKLAGAGIQPYSGKVGSDDVGKVDMAYRVVADHIRTL 356

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341
           SF IADG  P N+GR YVLRRI+RRA+ +    L   +     L+      MG  +PEL 
Sbjct: 357 SFAIADGSRPGNDGREYVLRRILRRAVHFGHQKLMAKQGFFSSLVDVFVRVMGDVFPELK 416

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLD 399
             +  I++ ++ E+  F  TL +G          + ++   +L+G  AF L+DT+  P+D
Sbjct: 417 DNEKNIKDIIKEEEASFESTLAKGYERFKKAADAVKENGGTVLSGQDAFVLWDTYDYPID 476

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + + +    GL+ +D+  FN A+EE R +AR      G         S+     AT    
Sbjct: 477 LTEVMAVDFGLS-VDMEGFNIAMEEARQKARNARYKAGGK-------SIVLDANAT---- 524

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                    ++          P       SS+VKAI    E +  A   +   +V + T 
Sbjct: 525 -------SHLRNQGLASTNDSPKFKHEVHSSVVKAIYTGSEFIATASGDEDFGLVLESTS 577

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL----RTEMSLVLTI 575
           FYAE GGQ+ DTG   G      + +VQ  A    +H      G           +   +
Sbjct: 578 FYAEQGGQIYDTGSIEGPTGSFTVNNVQVFAGY-VLHIGSFLEGPNSKALSVGDEVKCKV 636

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           DY  R  ++ NH+ TH+L+ AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ I
Sbjct: 637 DYTRRTLIAPNHTCTHMLNFALREVLGDHIDQKGSIVLPEKLRFDFSHGKPVQPEDLRKI 696

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683
           E  VN  I   L V  + +   DA   +G  A+ G  Y D VRVVS+             
Sbjct: 697 EYIVNQQIKDELEVSAQEIKLVDAKRINGLRAVFGEIYPDPVRVVSIGRKVEDLLANPES 756

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDE 740
           ++    S+ LCGGTH+S+T +     ++SE  I  G+RRI A+T +   +A       D 
Sbjct: 757 KEWLSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECASQAMKLASSIDS 816

Query: 741 KLKSLASFLKVSQG---------------------NVVGRVEEIWEEYRKLQ----LIHA 775
            +   +     +                       ++ G V ++ E+ R+ +      + 
Sbjct: 817 DINEASKLDGATLEKKIGSIKNTLDAAAIPAARKADLKGNVSKLEEQLREAKKKMGKENI 876

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK-E 833
           ++ ++  ++           F        +D+  ++  +     + +   IM+    +  
Sbjct: 877 QKAVKTAIDAAEAAVSEGKPFCVTHADVGLDTTAVREAVVKAMDRFKGLPIMVFSTDEAS 936

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            KA +   V  D  + F  +D    S   L G GGGG+  +AQ  G + ++  +A+    
Sbjct: 937 NKAVIYAGVPPDAPNGFKVLDWLTPSIAPLKGKGGGGKNGLAQGQGSDASRVKEAMELAT 996

Query: 894 SF 895
             
Sbjct: 997 QI 998


>gi|169829321|ref|YP_001699479.1| alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168993809|gb|ACA41349.1| Alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 842

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/859 (36%), Positives = 462/859 (53%), Gaps = 65/859 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +LEFF++ GH   PS+ L+P NDP+L++ NSG+   K  F G+  P    +
Sbjct: 22  MKAVDIRQMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRVIPDNPRI 81

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K   
Sbjct: 82  TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMG 137

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D   L IT++ ED+EA+ +W +  G+  +++IR+    NFW + E GP GP SEIF+D+
Sbjct: 138 FDPELLSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDR 194

Query: 180 GECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G                E ERY+EIWNLVF QF          LPK +IDTGMGLER+ +
Sbjct: 195 GVEYGSDENDPEMYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVS 254

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRS 281
           V+Q    N+D DLF  +I+  E+    KY+  + V+               +VI DH+R+
Sbjct: 255 VVQNVPTNFDTDLFMPIIEKIEEFANRKYKRPSEVDLNEIFGSEEDINTPFKVIADHIRT 314

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G  +P M  L+P +   M   YPE+ 
Sbjct: 315 VAFAIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVT 374

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399
           +    I+  +++E+ RF +TLD GL + + V         + + G  AF+LYDT+G P++
Sbjct: 375 EKCEFIQRVIKNEEIRFHETLDGGLAIFNEVAESQKAAGHDFIPGADAFRLYDTYGFPIE 434

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + ++     G+  +D   F  A+EEQR RARA    + S   +     L     A++F+G
Sbjct: 435 LTEEYAEEVGMK-VDHEGFETAMEEQRERARAARQDVDSMQVQNEV--LANLTVASEFVG 491

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           +D L                         ++ + A++  G++ + A  GQ+  V+  +TP
Sbjct: 492 FDTL-----------------------VANTEIAAMIVNGQVEKVASEGQEALVILAKTP 528

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE GGQ+ D+G    D     + DVQK   G  +H  IVE G +  E ++   +   +
Sbjct: 529 FYAEMGGQIADSGIISNDSFTAVVKDVQKAPNGQPLHTVIVESGEMHVEDAVQAIVHRDD 588

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  +  NH+ATH++  AL  +LG HV+Q GS + PD LRFD +H   +T  EL+ IE  V
Sbjct: 589 RNLIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIV 648

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ +  ++ VV   M  + A A GA AL G KY D VRVVS+     G +S  LCGG HV
Sbjct: 649 NEKVWDDIEVVIEEMAIDQAKAKGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHV 703

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             + EI    IVSE  I AG RRIEA+TG+ A   +  ++  L   A+ LK +  ++V +
Sbjct: 704 KRSSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEVVKEEEALLNDAAALLKANPKDIVTK 763

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH---KIADVNFMSHIIS--EVDSKELKSVMD 814
           V+ +  +Y++LQ  +     ++       +      +    S        D+  L+ +MD
Sbjct: 764 VQALQGDYKELQRDNEALSQKIANAHSWGNCRCSTNNWRCHSSFYKSRSKDNNLLRQMMD 823

Query: 815 ALQKKIQSGIIMLVGISKE 833
            L+  +   +I+L  +  +
Sbjct: 824 DLKALMPKAVIVLGAVDGD 842


>gi|313104284|sp|P40825|SYA_YEAST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS; Flags: Precursor
          Length = 983

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/967 (30%), Positives = 464/967 (47%), Gaps = 93/967 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 35  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 94

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 95  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 154

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK   G+  D I+     DNFW M + GPC
Sbjct: 155 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 213

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 214 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 272

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 273 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 332

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 333 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 392

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +     +   + + L+G   ++LYDT+G 
Sbjct: 393 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 452

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E   A  
Sbjct: 453 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 509

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                           +           +  V   +  +      V+E    G+K  ++ 
Sbjct: 510 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 553

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + D       +  +   G   H   +E G L     ++ + 
Sbjct: 554 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 613

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK +
Sbjct: 614 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 673

Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           ED  N+ I +NL      I         G  A+ G  Y D VRVVSV             
Sbjct: 674 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 733

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738
           E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A     L  Q   
Sbjct: 734 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 793

Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                         ++KLK L   L       +++  +  +  +I +  +      AK++
Sbjct: 794 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 853

Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832
            +  ++++        +  ++   I    ++K +   ++ ++         I +L G   
Sbjct: 854 NKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDSVKDKSIYLLAGNDP 913

Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E + +    ++   L    +   LA+  + ++GG   GG+ ++ Q  G        A+  
Sbjct: 914 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 972

Query: 892 VASFLKK 898
           + S  K+
Sbjct: 973 LESLFKE 979


>gi|315080484|gb|EFT52460.1| alanyl-tRNA synthetase [Propionibacterium acnes HL078PA1]
          Length = 892

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/926 (32%), Positives = 466/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKSAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGKKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L +     + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKAGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|313812791|gb|EFS50505.1| alanyl-tRNA synthetase [Propionibacterium acnes HL025PA1]
          Length = 892

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEACEAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|327443563|gb|EGE90217.1| alanyl-tRNA synthetase [Propionibacterium acnes HL013PA2]
          Length = 892

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/926 (32%), Positives = 466/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++     V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKAPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|313471806|sp|Q5AQL1|SYA_EMENI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|259486703|tpe|CBF84773.1| TPA: alanyl-tRNA synthetase, putative (AFU_orthologue;
           AFUA_8G03880) [Aspergillus nidulans FGSC A4]
          Length = 961

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/969 (30%), Positives = 464/969 (47%), Gaps = 95/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R TFL++FQ  GH  + SS + P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 12  TSKLVRDTFLQYFQGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQ 71

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLT+ 
Sbjct: 72  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQYSWELLTQV 131

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY+T ++         D EA  LW K  G+  D I+     DNFW M + GPC
Sbjct: 132 YGLDPGRLYVTYFEGNKEGGLQPDLEAKALW-KAVGVPEDHILPGNMKDNFWEMGDQGPC 190

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+Q+ ++N      LP   +DTGMG
Sbjct: 191 GPCSEIHYDRI-GGRNAASLVNQDDPNVLEIWNNVFIQYNRENDGSLRSLPNKHVDTGMG 249

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F  + Q  + +          G          +RV+ DH+R
Sbjct: 250 FERLVSVLQDKSSNYDTDVFGPIFQTIQVITGAREYQGRFGTDDSDGIDTAYRVVADHVR 309

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           +  F I+DG++P NEGRGYV+RR++RR   YAR     E       ++P +  ++G  +P
Sbjct: 310 TLMFAISDGVVPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTVVEQLGDMFP 369

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           EL Q +  + E L  E+  F KTLDRG    +     +    D  L+G   ++LYDT G 
Sbjct: 370 ELKQKQQDVIEILNEEEISFAKTLDRGERQFEQYAQQAKTAGDHKLHGADVWRLYDTFGF 429

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RG     +   ++  EE R +A+  S G    TT  +   + +      
Sbjct: 430 PVDLTRIMAEERG-----LEIDDRQFEEARHKAKEASKGQKKTTTGSVKLDVHDLG---- 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                     K  K +               V++ +KAI          +     +++ +
Sbjct: 481 ----------KLEKMNGVPKTDDSAKFEIGNVTAQIKAIYHGKTFHSSTQNLDDSEQIGI 530

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T FYAE GGQ  DTG  + DG         ++  G  +H   ++ G  + + +++ 
Sbjct: 531 ILDRTNFYAEQGGQENDTGRIVIDGQAELEVVDVQQYAGYVLHTGYMKYGSFKVDDTVIC 590

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+ AL  +LG  + Q GS ++ + LRFD +H  P+T  EL 
Sbjct: 591 EYDELRRWPIRNNHTGTHILNFALRGVLGDGIEQKGSLVSAEKLRFDFSHKSPVTDVELV 650

Query: 634 SIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682
            IED     I +  L     +        +G  A+ G  Y D VRVVSV           
Sbjct: 651 KIEDLSTQYIRRNCLVYSKEVPLSIARNIAGVRAVFGETYPDPVRVVSVGAELDEILKNV 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---------- 731
                   S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A          
Sbjct: 711 EDPRWADFSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRLAEEF 770

Query: 732 ---RSHLM------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772
               +HL        +++  K +   L     + V +           ++I +E +  Q 
Sbjct: 771 EKRLNHLEAMPSGSAKEQNAKQIQVELNQLSISAVQKSRFRERFTQINKKIIDEQKAQQK 830

Query: 773 IHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGI 830
           + +K+ ++      +          ++ +    ++K +   +  ++ K+    + +L   
Sbjct: 831 LESKKAVESITSYFAAPENANKSWLIAKLPISANAKAVSECLTYVKTKLADKMVYVLASS 890

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++ + +    V + + D   +A + +   ++ +GG  GG  P      G N  K D A+
Sbjct: 891 LEDGRVAHGCYVPKAISDQGASASEWSSAVSRAVGGKAGGKGPTS-IGNGINPEKVDDAV 949

Query: 890 AGVASFLKK 898
              + +L K
Sbjct: 950 DLASEYLSK 958


>gi|256272535|gb|EEU07514.1| Ala1p [Saccharomyces cerevisiae JAY291]
          Length = 958

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/967 (30%), Positives = 464/967 (47%), Gaps = 93/967 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK   G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +     +   + + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E   A  
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                           +           +  V   +  +      V+E    G+K  ++ 
Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + D       +  +   G   H   +E G L     ++ + 
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK +
Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648

Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           ED  N+ I +NL      I         G  A+ G  Y D VRVVSV             
Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738
           E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A     L  Q   
Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768

Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                         ++KLK L   L       +++  +  +  +I +  +      AK++
Sbjct: 769 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 828

Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832
            +  ++++        +  ++   I    ++K +   ++ ++         I +L G   
Sbjct: 829 NKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYIKSNDAVKDKSIYLLAGNDP 888

Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E + +    ++   L    +   LA+  + ++GG   GG+ ++ Q  G        A+  
Sbjct: 889 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 947

Query: 892 VASFLKK 898
           + S  K+
Sbjct: 948 LESLFKE 954


>gi|256077790|ref|XP_002575183.1| alanyl-tRNA synthetase [Schistosoma mansoni]
 gi|238660414|emb|CAZ31416.1| alanyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 980

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/978 (30%), Positives = 452/978 (46%), Gaps = 102/978 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R  F EFF+  GH  + SSS IP NDPTL+F N+GM  +K IF G   P      
Sbjct: 6   TAKELRKQFFEFFESKGHVYVHSSSTIPHNDPTLLFANAGMNQYKPIFQGTVDPNSELGR 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VGR   HHTFFEMLGN+SFG YFK+ A + AW+LLT+ 
Sbjct: 66  LKRSYNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGNWSFGDYFKKEACEWAWELLTEV 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY+T +          DEEA  +W    GL  D ++     +NFW M ETGPC
Sbjct: 126 WKIPSERLYVTYFGGDISNGLPADEEARDIWIS-IGLPKDHVLPFGMKENFWEMGETGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LP   IDTGMG
Sbjct: 185 GPCSEIHYDRVGDRD-AAHLVNQDDPDVLEIWNLVFIQFNREEGGSLKPLPAKHIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ K +NYD DLF  L +  E  T  +               + +RV+ DH R
Sbjct: 244 FERVLSVLQNKRSNYDTDLFVPLFKTIEAGTNTRPYTGKVGVEDTDKIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339
             +  + DG    N GRGYV+RRI+RRA+ +A   L      +  L+  +   +G  +PE
Sbjct: 304 VLTIALGDGGRAQNTGRGYVIRRILRRAVRFAVEVLNAKPGFLATLVDIVIETLGDTFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG----KDEILNGDVAFKLYDTHG 395
           + +    I+E +  E+E+F  TL RG    D V+  L      +  L+G+VA+ LY+T+G
Sbjct: 364 ITRDPDTIKELINEEEEQFLVTLKRGRRFFDRVIKDLKASGSNNTTLSGEVAWGLYETYG 423

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ Q +     L  ID+  + +A EE + R+++     GS   +    +L E     
Sbjct: 424 FPLDLTQILAEEHHLK-IDLNGYEKAKEEAQIRSQSRKCTGGS-IIDLTVHALAELKSKN 481

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVV 514
                          E            +     + V AI+ + + VE    S Q   ++
Sbjct: 482 --------ISVTDDSEKFVYTSDLNGNYVFPDSEATVLAILYENKFVESVDLSSQMCGII 533

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVL 573
            ++T FYAE+GGQL D G        +    V        ++ H     G L     ++L
Sbjct: 534 LNKTIFYAESGGQLYDHGFITSLTDEVTEFSVSDVQCRGGYILHIGNLHGKLIVGNRVLL 593

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           ++D   R  L  NH+ TH+L+ AL  ++     Q GS + PD LRFD T  + +T  EL 
Sbjct: 594 SLDTVRRTALMRNHTGTHVLNFALRELVDES-EQKGSLVAPDRLRFDFTAKRGMTRDELA 652

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-------- 684
             E+  + +I++ L V +  ++   A    G  A+ G  Y D VRVVS+           
Sbjct: 653 KAEEICDTMISKRLNVYSSNVSLSYAKTIQGVRAVFGEAYPDPVRVVSIGVPVTSLVADP 712

Query: 685 ---DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G   S   CGGTHV +T  I +L IVSE +I  G+RRI A+TG  A          
Sbjct: 713 ETGYGKTTSVEFCGGTHVLNTKHIGVLVIVSEEAISKGVRRIIALTGHEAERAQKEALRL 772

Query: 742 LKSLASFLK--------------------------VSQGNVVGRV-------EEIWEEYR 768
              +  F+K                           +    V R        E + E+  
Sbjct: 773 DNEVNEFIKLVNQSISLHQNHNNNITDDFNINRQMSNLSEHVSRAVISQHHRENLREKLF 832

Query: 769 KLQLIHAKRKLQ---------LNVEDLSCHKIAD--VNFMSHIIS-EVDSKELKSVMDAL 816
           K + +   R            L    L    +A+   N++ H+   + ++K + S +  +
Sbjct: 833 KAKKLLDARDKASKTAITSKVLEEARLLGESLANSPSNYIIHVFDAQSNTKIMNSAIKEI 892

Query: 817 QKKIQSGIIMLVGIS-KEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           ++   +  +M++      KK +VL  V + L      A++     +K +  G GGG+ + 
Sbjct: 893 ERICPNKAVMVISSDLTSKKLTVLCQVPKVLFSRGLKAMNGVTHISKTM-DGKGGGKENS 951

Query: 875 AQSGGPNGNKADQAIAGV 892
           AQ+ G   +  D+ I   
Sbjct: 952 AQAVGSRIDTLDEVIHLA 969


>gi|315108664|gb|EFT80640.1| alanyl-tRNA synthetase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDVVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  +AQ  G +    D A+  V + L
Sbjct: 864 KDDIAQGAGSDPTGIDAALRAVNTKL 889


>gi|314966609|gb|EFT10708.1| alanyl-tRNA synthetase [Propionibacterium acnes HL082PA2]
          Length = 892

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VEVV  +
Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGASVSAAEPGAVVEVVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 TTRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G K    VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKSPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++  +  V   +L+++
Sbjct: 745 DRVSKLATDLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|121719583|ref|XP_001276490.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
 gi|119404702|gb|EAW15064.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
          Length = 961

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/969 (31%), Positives = 475/969 (49%), Gaps = 95/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R TFL+FF+KNGH  +PSS ++P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 12  TARRVRDTFLDFFRKNGHTFVPSSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFAR 71

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK 
Sbjct: 72  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKV 131

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +D +RLY+T ++         D EA  LW    G+  D I+     DNFW M + GPC
Sbjct: 132 YGIDPQRLYVTYFEGHEEGGLEPDLEAKALWTA-VGVPEDHILPGNMKDNFWEMGDQGPC 190

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG
Sbjct: 191 GPCSEIHYDRI-GGRNASHLVNQDDPNVLEIWNNVFIQYNRETDRTLRPLPNKHVDTGMG 249

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F  L  A + +TG +                 +RV+ DH+R
Sbjct: 250 FERLVSVLQDKSSNYDTDVFSPLFGAIKDITGAREYRGMFGSGDADGIDTAYRVVADHVR 309

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           + +F I+DG+ P ++GRGYV+RR++RR   YAR     E       L+P L  ++G  +P
Sbjct: 310 TLTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKLVPILVDQLGEMFP 369

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           EL + +  + E L  E+  F KTLDRG    +     + L  ++ L+G   ++LYDT G 
Sbjct: 370 ELRKKQQDVMEILDEEEISFAKTLDRGERQFESYAQQAKLKGNDKLHGADVWRLYDTFGF 429

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL   D           R +A+  S G     T+ +   + +      
Sbjct: 430 PVDLTRLMAEERGLKIDDTEFEEA-----RLKAKEASKGQKKSATDTVKLDVHDLG---- 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                     K  K +               +++ VKAI              +G+++ +
Sbjct: 481 ----------KLEKMNDVPKTDDSFKFEMCNINAEVKAIYHGKVFHSDTAVISAGEQIGI 530

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T FYAE GGQ  D G  I DG         +   G  +H   ++ G      +++ 
Sbjct: 531 ILDRTNFYAEQGGQENDIGRIIIDGKAELEVSDVQLYAGYVLHTGFMKYGSFSVGDTVLC 590

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   +T  EL+
Sbjct: 591 EYDELRRWPIRNNHTGTHILNFALKRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEKELE 650

Query: 634 SIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVV-----------SV 681
            IED   + I QN  V    +        +G  A+ G  Y D VRVV           +V
Sbjct: 651 RIEDISTEYIRQNCDVYSQEVPLATARQITGVRAVFGETYPDPVRVVSVGVEVEEILQNV 710

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736
           +       S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A          
Sbjct: 711 KDPRWNEVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHRVQQVATDF 770

Query: 737 --------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEE----YRKLQL 772
                          ++++ K +   L       V +  +  R   I ++     + LQ 
Sbjct: 771 AKRLDRLDAMPLGPQKEQEAKQVQVELNQLSISAVQKSRLRERFAAINKKVIDGQKSLQK 830

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830
           + +K+ L          + ++ +++   +    ++K +   ++ ++ K+Q   + +L   
Sbjct: 831 LESKKALDAITSYFEAPENSEKSWLVTRLPISANAKAVSESLNFVKSKLQDKTVYVLAAD 890

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S++ + +    V++ ++D   +A D A   +  +GG  GG  P      G + NK ++AI
Sbjct: 891 SEQGRVAHGCYVSKAMIDQGASANDWAATVSGAVGGKAGGKGPTS-IGNGVHPNKVEEAI 949

Query: 890 AGVASFLKK 898
           A  + +L K
Sbjct: 950 ALASDYLSK 958


>gi|156838512|ref|XP_001642960.1| hypothetical protein Kpol_1071p9 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113543|gb|EDO15102.1| hypothetical protein Kpol_1071p9 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 957

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/966 (30%), Positives = 461/966 (47%), Gaps = 93/966 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
           N + +R TF ++F+   H  + SS ++P +DPTL+F N+GM  FK+IF G   P  +   
Sbjct: 12  NANKVRDTFYDYFKSKNHTFISSSPVVPYDDPTLLFANAGMNQFKSIFLGTVDPTSKLYD 71

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDL++VG+ + HHT+FEMLGN+SFG YFK  AI  +WDLLT  
Sbjct: 72  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTYFEMLGNWSFGDYFKNDAIVYSWDLLTNV 131

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY++ ++ DE        EA  +W+   G+  D I+     DNFW M E GPC
Sbjct: 132 YKIPKDRLYVSYFEGDESQGLEPDFEARDIWRS-VGVPEDHIVPGNLKDNFWEMGEEGPC 190

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GP SEI +D+           +++    +EIWNLVF+Q+ + ++++   LP   +DTGMG
Sbjct: 191 GPSSEIHYDRI-GGRNASQLVNKDDPNVLEIWNLVFIQYNRDSERKLKALPAKHVDTGMG 249

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ   +NYDIDLF  + +  + +T  +                 +RV+ DH R
Sbjct: 250 FERLVSVLQNVNSNYDIDLFTKIFKRIQAITNAREYTGKFGKYDVDGVDTAYRVLADHAR 309

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F + DG +P NEGRGYV+RRI+RR   YAR             L+P +  E  S +P
Sbjct: 310 TLTFALTDGCIPNNEGRGYVIRRILRRGARYARKYMNYSIGDFFSKLIPQVIEENKSIFP 369

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGL 396
           E+ +    I+E L  E+  F KTLDRG  L +   S       + L+G   ++LYDT+G 
Sbjct: 370 EVSKDFNYIKEILDEEEASFAKTLDRGEKLFEKYASDASKLDSKTLDGLQVWRLYDTYGF 429

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID+  F +A ++    ++  S        +     +        
Sbjct: 430 PVDLTELMAQELGL-NIDVPGFERAKKDSYEASKRASKKYDIDLFKLDVHDI-------- 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515
                       +  D            T  V + V  I    E ++ A     K  V+ 
Sbjct: 481 ----------SKLNTDAVPKTNDKDKYETTDVMATVLRIHDGSEFLDVAADKDKKYGVIL 530

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ+ D G  I DG      +  ++  G  +H   +  G L T   +V + 
Sbjct: 531 DKTCFYAEQGGQIYDNGKLIIDGKTEFNVENVQEFNGYILHIGTLMDGKLSTNDKVVASF 590

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL  +LG  V Q GS +TP+  RFD +H KP+T  E+K I
Sbjct: 591 DELRRFPIRNNHTGTHILNFALRDVLGKDVEQKGSLVTPEKFRFDFSHKKPLTLDEIKEI 650

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683
           E   + +I    PV  + +   +A   S   A+ G  Y D VRVVS+             
Sbjct: 651 EMICDTLIVSKKPVFYKNVQLNEAKRISSIRAVFGESYPDPVRVVSIGQPVEKILEDPTE 710

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736
            +    S   CGGTHV++T +I  L I+ E+ I  GIRRI A+TG  A +          
Sbjct: 711 TNSSEFSIEFCGGTHVANTEDIQKLAIIEETGIAKGIRRITAVTGPEAFNAQRIAEQFNG 770

Query: 737 ------------GQDEKLKSLASFLKVSQGNVVGR----------VEEIWEEYRKLQLIH 774
                        +D+K+K L   L  S  +V+ +           ++  EE RK   + 
Sbjct: 771 ELDDLNSLPFSDAKDKKIKELGFSLNQSTVSVLSKHLLREKFNKIEKKYKEELRKKNKLE 830

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS-KE 833
           AK  L    E  + +K +     +  I   +SK +   ++ ++       I L+    K 
Sbjct: 831 AKVILDKVQEYFNTNKSSKFFVYAFDIP-ANSKAITDAINYIKNSNNDKSIYLLSGDIKG 889

Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +    +++D +    +  +L ++   ++ GG  GGR ++ Q      +  ++ I  +
Sbjct: 890 NKLAHGCYLSDDAISKGIDGEELVKVVTTLI-GGKAGGRKNIFQGVSTYNDNINEVIDNI 948

Query: 893 ASFLKK 898
                +
Sbjct: 949 TKIFSE 954


>gi|313764300|gb|EFS35664.1| alanyl-tRNA synthetase [Propionibacterium acnes HL013PA1]
 gi|313816208|gb|EFS53922.1| alanyl-tRNA synthetase [Propionibacterium acnes HL059PA1]
 gi|313827649|gb|EFS65363.1| alanyl-tRNA synthetase [Propionibacterium acnes HL063PA2]
 gi|314915290|gb|EFS79121.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA4]
 gi|314918160|gb|EFS81991.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA1]
 gi|314920236|gb|EFS84067.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA3]
 gi|314931759|gb|EFS95590.1| alanyl-tRNA synthetase [Propionibacterium acnes HL067PA1]
 gi|314955561|gb|EFS99962.1| alanyl-tRNA synthetase [Propionibacterium acnes HL027PA1]
 gi|314958056|gb|EFT02159.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA1]
 gi|314967492|gb|EFT11591.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA1]
 gi|315098688|gb|EFT70664.1| alanyl-tRNA synthetase [Propionibacterium acnes HL059PA2]
 gi|315101309|gb|EFT73285.1| alanyl-tRNA synthetase [Propionibacterium acnes HL046PA1]
 gi|327450628|gb|EGE97282.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA3]
 gi|327454034|gb|EGF00689.1| alanyl-tRNA synthetase [Propionibacterium acnes HL083PA2]
 gi|328753292|gb|EGF66908.1| alanyl-tRNA synthetase [Propionibacterium acnes HL025PA2]
 gi|328754046|gb|EGF67662.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA1]
          Length = 892

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTVT-----------------------GIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +      + +  +                + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  +AQ  G +    D A+  V + L
Sbjct: 864 KDDIAQGAGSDPTGIDAALRAVNTEL 889


>gi|6324911|ref|NP_014980.1| Ala1p [Saccharomyces cerevisiae S288c]
 gi|1163069|emb|CAA89980.1| ALA1 [Saccharomyces cerevisiae]
 gi|1420729|emb|CAA99658.1| ALA1 [Saccharomyces cerevisiae]
 gi|285815203|tpg|DAA11096.1| TPA: Ala1p [Saccharomyces cerevisiae S288c]
          Length = 958

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/967 (30%), Positives = 464/967 (47%), Gaps = 93/967 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK   G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +     +   + + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E   A  
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                           +           +  V   +  +      V+E    G+K  ++ 
Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + D       +  +   G   H   +E G L     ++ + 
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK +
Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648

Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           ED  N+ I +NL      I         G  A+ G  Y D VRVVSV             
Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738
           E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A     L  Q   
Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768

Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                         ++KLK L   L       +++  +  +  +I +  +      AK++
Sbjct: 769 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 828

Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832
            +  ++++        +  ++   I    ++K +   ++ ++         I +L G   
Sbjct: 829 NKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDSVKDKSIYLLAGNDP 888

Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E + +    ++   L    +   LA+  + ++GG   GG+ ++ Q  G        A+  
Sbjct: 889 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 947

Query: 892 VASFLKK 898
           + S  K+
Sbjct: 948 LESLFKE 954


>gi|151945412|gb|EDN63655.1| alanyl-tRNA synthetase [Saccharomyces cerevisiae YJM789]
          Length = 958

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/967 (30%), Positives = 464/967 (47%), Gaps = 93/967 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK   G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDENLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +     +   + + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E   A  
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                           +           +  V   +  +      V+E    G+K  ++ 
Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + D       +  +   G   H   +E G L     ++ + 
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK +
Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648

Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           ED  N+ I +NL      I         G  A+ G  Y D VRVVSV             
Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738
           E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A     L  Q   
Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768

Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                         ++KLK L   L       +++  +  +  +I +  +      AK++
Sbjct: 769 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 828

Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832
            +  ++++        +  ++   I    ++K +   ++ ++         I +L G   
Sbjct: 829 NKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDAVKDKSIYLLAGNDP 888

Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E + +    ++   L    +   LA+  + ++GG   GG+ ++ Q  G        A+  
Sbjct: 889 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 947

Query: 892 VASFLKK 898
           + S  K+
Sbjct: 948 LESLFKE 954


>gi|190407630|gb|EDV10897.1| alanyl-tRNA synthetase [Saccharomyces cerevisiae RM11-1a]
 gi|207340860|gb|EDZ69081.1| YOR335Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259149812|emb|CAY86616.1| Ala1p [Saccharomyces cerevisiae EC1118]
 gi|323352223|gb|EGA84760.1| Ala1p [Saccharomyces cerevisiae VL3]
          Length = 958

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/967 (30%), Positives = 464/967 (47%), Gaps = 93/967 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK   G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +     +   + + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E   A  
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                           +           +  V   +  +      V+E    G+K  ++ 
Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + D       +  +   G   H   +E G L     ++ + 
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK +
Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648

Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           ED  N+ I +NL      I         G  A+ G  Y D VRVVSV             
Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738
           E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A     L  Q   
Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768

Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                         ++KLK L   L       +++  +  +  +I +  +      AK++
Sbjct: 769 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 828

Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832
            +  ++++        +  ++   I    ++K +   ++ ++         I +L G   
Sbjct: 829 NKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDAVKDKSIYLLAGNDP 888

Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E + +    ++   L    +   LA+  + ++GG   GG+ ++ Q  G        A+  
Sbjct: 889 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 947

Query: 892 VASFLKK 898
           + S  K+
Sbjct: 948 LESLFKE 954


>gi|281208624|gb|EFA82800.1| alanyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 958

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/973 (29%), Positives = 456/973 (46%), Gaps = 101/973 (10%)

Query: 3   NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
            V+ IR TF++FF     H  +PSS ++P +DPTL+F N+GM  FK IF GQ  P     
Sbjct: 7   TVNEIRKTFIDFFVNKCEHTFVPSSQVVPHDDPTLLFANAGMNQFKPIFLGQADPRSEQA 66

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI  AW+LLT 
Sbjct: 67  KLKRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKREAITWAWELLTD 126

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + LD+ RLY + +        + D EA  +W++   L AD+++     +NFW M +TGP
Sbjct: 127 VYKLDKERLYASYFGGAADKGLEPDLEAKSIWEEF--LPADRVLPFGMKENFWEMGDTGP 184

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI FD+ E   G     + +    IEIWNLVF+Q+ ++  +    LP   +DTGM
Sbjct: 185 CGPCSEIHFDKIEGRTGSQALVNADDPTLIEIWNLVFIQYNREADKSLRPLPNKHVDTGM 244

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT----------GMKYEGNNIVNHRVIVDH 278
           GLER+ +++Q+   NYD D+F  +    ++VT          G        + +RVI DH
Sbjct: 245 GLERVTSIIQKVGTNYDTDIFGPIFTEIQKVTGFTEPYGGKVGKDDPEQVDMAYRVIADH 304

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R+ +F +ADG +P+++GRG VLRRI+RRA+ Y  + L         L+  +    G  +
Sbjct: 305 IRTLTFSLADGAIPSSDGRGSVLRRILRRAIRYGKQKLKAPPGFFHRLVDVVVAHFGEFF 364

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL      I   + SE++ F +TLD+G++  + +L     + +++   A  L  + G P
Sbjct: 365 PELRSRPQHIISVIESEEKMFERTLDKGILEFENILKKTS-NGVISASHAHYLSSSFGFP 423

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   +   +G+  +D+  +   +E+    +R       S                   
Sbjct: 424 IDLTTLMAEEKGVK-VDLKGYEVLVEKFAEDSRRRQKEKKSELN---------------- 466

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK---VEVV 514
           +G         +++                V ++VKAI    E++++  +  K   V V+
Sbjct: 467 LG---AEPISILQKRSIQPTNDQYKYEQKEVQTVVKAIWTGKELIDQLTAEHKNTLVGVI 523

Query: 515 FDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR--TEMS 570
            + T FY E GGQ+ D G    +            K   G  +H   +     +      
Sbjct: 524 LESTNFYPEQGGQIYDIGNINFVDSQNTAFTVSDCKVFGGYVLHIGYISDDCDKLAVGDK 583

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +  T+DY  R  +  NH++TH+++ AL  +LGS V Q GS +    LRFD + +K ++  
Sbjct: 584 VETTVDYTRRIPIMSNHTSTHMVNFALRQVLGSTVDQRGSLVDNTRLRFDFSSTKGMSKD 643

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRVR-----------V 678
           EL   +  VN++IA+ L V  + +    A       A+ G  Y D VR           +
Sbjct: 644 ELVKTDAIVNELIAKQLNVYCKDVELASAKKIYGLRAVFGEVYPDPVRVVSVGVDVNDLL 703

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
            +    +   +S   CGGTH++++ E  L  IVSE ++ AG+RR+ A+TG  A       
Sbjct: 704 ANPSNTEWANYSIEFCGGTHIANSKEAELFTIVSEEAVSAGVRRLFAVTGTDASVVYDNN 763

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEY--------RKLQLIHAKRKLQLNV----EDL 786
            +   +     K++  ++   V  +            ++++L+     LQ  V    ++L
Sbjct: 764 RKLETAFTDAAKLTGKDLKDHVPSLLALLESHPVSASKRIELLEKLNNLQTTVKKYFKEL 823

Query: 787 SCHKIADVNFMSHIIS-----------------EVDSKELKSVMDALQKKIQSGIIMLVG 829
               I+D N +   I                   +++  +   +  +QKK     IM V 
Sbjct: 824 ESSSISDSNKVVDEIIAQLTESKAPVHVGVINLGLNNSAITDAIKNVQKKCPDTAIMFVS 883

Query: 830 ISKEKKASVLIVV----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             +EKK   ++ +    +        A       A+ L GG GGG+  +AQ  G      
Sbjct: 884 PDQEKKKVCVLSIVPPTSTAASKGLTANGWVVKVAEQL-GGKGGGKTDVAQGTGSQIENV 942

Query: 886 DQAIAGVASFLKK 898
           D A+     F KK
Sbjct: 943 DNAVEFAKDFAKK 955


>gi|323335374|gb|EGA76661.1| Ala1p [Saccharomyces cerevisiae Vin13]
 gi|323346372|gb|EGA80661.1| Ala1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 958

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/967 (30%), Positives = 463/967 (47%), Gaps = 93/967 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK   G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +     +   + + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E   A  
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                           +           +  V   +  +      V+E    G+   ++ 
Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKXYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + D       +  +   G   H   +E G L     ++ + 
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK +
Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648

Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           ED  N+ I +NL      I         G  A+ G  Y D VRVVSV             
Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738
           E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A     L  Q   
Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768

Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                         ++KLK L   L       +++  +  +  +I +  +      AK++
Sbjct: 769 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 828

Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832
            +  ++++        +  ++   I    ++K +   ++ ++         I +L G   
Sbjct: 829 NKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDAVKDKSIYLLAGNDP 888

Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E + +    ++   L    +   LA+  + ++GG   GG+ ++ Q  G        A+  
Sbjct: 889 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 947

Query: 892 VASFLKK 898
           + S  K+
Sbjct: 948 LESLFKE 954


>gi|291228549|ref|XP_002734240.1| PREDICTED: alanyl-tRNA synthetase-like [Saccoglossus kowalevskii]
          Length = 1016

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/980 (29%), Positives = 456/980 (46%), Gaps = 101/980 (10%)

Query: 3    NVSSIRTTFLEFFQKNG-HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
                IR  F+++F++   H  +PSSS+IP  D TL+FTN+GM  FK+IF G   P     
Sbjct: 52   TSGEIRRKFIDYFKEKQSHLFVPSSSVIPREDKTLLFTNAGMNQFKSIFQGAVDPSSPIV 111

Query: 57   VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             Y+ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+   ++AWDLL  
Sbjct: 112  KYRRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKETCEMAWDLLIN 171

Query: 117  EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
             + L   RLY+T +          D E   +WK   G++ D+I+    N+NFW M   GP
Sbjct: 172  VYGLSSNRLYVTYFGGNQQLGLSPDIECRNIWKN-IGVAEDRILPYGMNENFWEMGTIGP 230

Query: 169  CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            CG CSEI +D+           +++    +E+WNLVF+Q+ ++       LP+ +IDTGM
Sbjct: 231  CGMCSEIHYDRIGN-RNATSLINKDDPSVLELWNLVFIQYNREEDGCLSKLPQHNIDTGM 289

Query: 229  GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHL 279
            GLER+ +++Q   +NYD DLF+ LIQ  ++ T M             N  + +RV+ DH+
Sbjct: 290  GLERLVSIIQGVDSNYDTDLFQPLIQEIQKCTSMPPYQGLVGDSDNENIDMAYRVLADHI 349

Query: 280  RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
            R+ +  I DG  P N  + Y+++R++RRA+ YA   L  +      L+P +   +G AYP
Sbjct: 350  RTLTIAITDGARPGNFKQSYIIKRLIRRAVRYATEKLNASPGQFASLVPIVVDTLGDAYP 409

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            EL+     + + +  E++ F K L +G   LD  +S L +  IL GD+A+K+YD  G P+
Sbjct: 410  ELLTNPQQVIDVINREEDLFLKQLKKGRKFLDKKISKLKEPRILPGDIAWKMYDGFGFPI 469

Query: 399  DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
            D+   +   +G++           +  +  ++           +       +    +   
Sbjct: 470  DLTILMCNEKGVSVDMEGYEEVKEKTHQITSQGGIKNQLEYGFDTNALQQLKHQNIS--- 526

Query: 459  GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                   +          C          +++ + ++   G+ VE     Q  +V+  QT
Sbjct: 527  -------TTDDSYKYSYECDDDGNYEFEVITAKITSLRVGGQFVESVEPDQSCDVILHQT 579

Query: 519  PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI---FVHHAIVERGILRTEMSLVLTI 575
             FYAE GGQL D G     G   Q    +     I   +V H+   +  L     L L I
Sbjct: 580  CFYAEQGGQLWDDGYFTKLGDEAQQIVFEVDNVQIYGGYVVHSGTTKKTLSVGEQLKLHI 639

Query: 576  DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
            + + R  L  NH+A H+L+ +L  + G  + Q GS + PD LRFD T+   +TS ++K I
Sbjct: 640  NEERRLGLMRNHTAAHILNWSLRHLHGDGIEQRGSLVAPDRLRFDFTYEDSLTSLQVKEI 699

Query: 636  EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683
            +D VN++I Q  PV ++ +  ++A    G  A+ G  Y D V+VVSV             
Sbjct: 700  QDQVNEVIEQYTPVDSQEVELDEAKQIEGLRAVFGEVYPDPVQVVSVGIPVTGLLTNPFG 759

Query: 684  EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
              G +    LCGGTHV  T  I  L I+ E  + +G+RRI AITG          D+ L 
Sbjct: 760  PGGFMSPVELCGGTHVHMTEHIGKLVIIDEGKVSSGVRRITAITGSDGWEADRKADDLLV 819

Query: 744  SLASFLKVSQGNVVG---------------------------RVEEIWEEYRKLQ---LI 773
             ++   K  + ++                             R  E+ EE  KL+     
Sbjct: 820  KVSELKKQIEESIENLTPSLRVLFDEANNLLEVVGASPIPLWRSRELKEELFKLKEDIKS 879

Query: 774  HAKRKLQLNVEDLSCHKIADVN-------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              K++ ++ V++         N        +  I +  ++K L  +MD  +    S  I+
Sbjct: 880  FDKKRKKMAVKEAISQAADMANDRLDRPFIVKEIHTGSNTKALMQIMDIFKNTTPSSAIL 939

Query: 827  LVGISKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA--QSGGPNG 882
            L G+ K+    + +    +  ++    A    +    ++  G  GG+  M   Q+   N 
Sbjct: 940  LYGVDKDDCTITCVCYTPKHAIEQGLKANGWLQHVNSLV-DGKVGGQDTMGRLQA--KNV 996

Query: 883  N-----KADQ-AIAGVASFL 896
            N     K  + A     S L
Sbjct: 997  NLEYLGKLKEIAEQYAKSIL 1016


>gi|323341643|ref|ZP_08081876.1| alanine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464068|gb|EFY09261.1| alanine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 869

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/908 (35%), Positives = 497/908 (54%), Gaps = 68/908 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S IRT FL++F+   H + P + L+P +D TL++ NSG+   K  F G+ KP  
Sbjct: 1   MKQLTSSEIRTMFLDYFKAQDHMIEPGAPLVPIDDDTLLWINSGVAALKKYFDGRVKPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL--TK 116
             +  VQK +R     ND+DNVG+T RHHTFFEMLGNFS G YFKE AI  A++ L  ++
Sbjct: 61  PRIANVQKSLRT----NDIDNVGKTARHHTFFEMLGNFSIGDYFKEEAIGFAYEFLFSSE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
             DLD  + Y +V+ +D+EAF +W     +S  +I+R  T+DNFW + + GPCGP SEIF
Sbjct: 117 WLDLDVNKAYFSVHTDDQEAFDIWVNKYNVSPSRILR--TDDNFWQIGD-GPCGPNSEIF 173

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNKQERF---ILPKMSIDTGM 228
           +D+GE                E +RY+E+WN+VF QF+     +      LP+ +IDTGM
Sbjct: 174 YDRGEKYDPEHIGERLFFEDLENDRYVEVWNIVFSQFDGVEGGDIHTFKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G ER+ +++Q+   N+D DLF  +IQA E +T MKY  +N++ +RVI DH+RS  F +AD
Sbjct: 234 GFERLVSIVQDGDTNFDTDLFIPIIQAIEALTPMKY-QDNVMAYRVISDHIRSLVFTLAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G + +NEGRGYVLRRI+RRA+ + ++L      +  L+  +   MG +YP L + + +I 
Sbjct: 293 GAVFSNEGRGYVLRRILRRAVRFGKVLEIEGTFLHGLVDDVIAVMGDSYPNLAEHRDMIV 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + + SE+ERF KTL  G  LL   +    ++ ++ GDVAFKLYDT+G P+++ Q+I    
Sbjct: 353 KLILSEEERFAKTLAGGEKLLLDTI-EANQEAVITGDVAFKLYDTYGFPIELTQEIAEEH 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
               +D+  F  +LEEQ+ RAR+    + S  +++    L      ++FI YD+      
Sbjct: 412 -HVTVDLDGFKASLEEQKERARSSRQKVESMGSQQ--EDLLNFKENSEFI-YDVFE---- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                  V  +   G+ V+      K  VVFD+T FYAE+GGQ+
Sbjct: 464 -------------------TQGRVVGLFVDGKRVDSFTG--KGHVVFDKTCFYAESGGQV 502

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    D  + ++ DV+K   G  + H +   G +       L ID + R  +  NHS
Sbjct: 503 ADTGTIESDSAKGKVLDVKKANGGQPL-HFVDVDGTITMGQVFDLKIDAKRRILIRKNHS 561

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
             HLLH AL +++G HVSQ GS +  +  RFD +H + +T  +L+ +E  +N  IA++LP
Sbjct: 562 CVHLLHSALKSVVGDHVSQAGSYVDDNYFRFDFSHFEKVTDEQLEKVELMINQWIAESLP 621

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +       E+A A GA AL    Y   VRVV++     G  S  LCGGTH   TGEI + 
Sbjct: 622 ITVVEKPLEEAKAMGAMALFSENYGSVVRVVTM-----GDASMELCGGTHAHGTGEIGVF 676

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEY 767
            +VSE S+ +G+RRI   T   A +     + ++ ++ + LK   Q ++  ++EE+  E 
Sbjct: 677 KLVSEESVGSGVRRILGKTSFGAYTSYKETEFEVDAIRTQLKLSPQKSIKTKIEEMEAEM 736

Query: 768 RKLQ----LIHAKRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           + L+    L+ A        E +   ++   D++F+   + + +   +K +++ ++  + 
Sbjct: 737 KLLEGKYKLMMADVLKAKTQEYIQMAEVVGNDLSFVWIDMDDQEMNVVKELVERIRDHVD 796

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              I+ V   K    + ++  ++  +     A DLA+ +A V  GG GGG+P+ AQ+GG 
Sbjct: 797 ---IVFVANHKASSVNFVVGCSDKAIKAGVKAGDLAKEAA-VTTGGNGGGKPNFAQAGGK 852

Query: 881 NGNKADQA 888
           +  K + A
Sbjct: 853 DITKIEDA 860


>gi|57524852|ref|NP_001005836.1| alanyl-tRNA synthetase, cytoplasmic [Gallus gallus]
 gi|53131091|emb|CAG31790.1| hypothetical protein RCJMB04_11d4 [Gallus gallus]
          Length = 913

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/914 (33%), Positives = 459/914 (50%), Gaps = 86/914 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SSS IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASQIRQRFIDFFKENQHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA DLLTKE
Sbjct: 66  LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +          D E  ++W  + GL+  +I+     DNFW M +TGPC
Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLAEGRILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGDRD-ASHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYMGQVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   L   +     L+  +   +G A+PE
Sbjct: 304 TITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+++F KTL RG  +LD  +  +G  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSMGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + +   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMEGFEE----ERKNAQLKSQGKGAGGEDLLMLDI-YAIEELRARG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            ++   S                     + + VKAI ++ + VEE  +GQ+  +V D+T 
Sbjct: 478 LEVTDDSPKYG----YTSDPSGTYDFGSLVATVKAIRREKKFVEEVSTGQECGIVLDRTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L+I
Sbjct: 534 FYAEQGGQIYDQGYMVKDDDSKEDKTEFTVKNVQVRGGYVLHIGTLYGSLKVGDQVHLSI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E+K +
Sbjct: 594 DETRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGALSTQEIKKV 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E   N +I +  PV  R           G  A+    Y D VRVVS+             
Sbjct: 653 EGIANQMIEEAKPVYARDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVEELLADPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD---E 740
             G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  AR  L   +   +
Sbjct: 713 PAGSITSIEFCGGTHLQNSGHAGPFVIVSEEAIAKGIRRIVAVTGAEARKALRKVESLKK 772

Query: 741 KLKSLASFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
            L +L + +KV      +V   + ++ E        +++K +L  A + L+  ++DL   
Sbjct: 773 VLSALDAKVKVQTAPNKDVQKEITDLSEMLATAVIPQWQKDELREAVKALKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             AD+                     +  + +   +K L   +   +        ML  +
Sbjct: 833 SKADIQKRVLEKTKQVIESHPNQPLVIMEMENGASAKALNESLKLFKTHSPQTATMLFAV 892

Query: 831 SKE-KKASVLIVVT 843
             E  + + L  V 
Sbjct: 893 DNEAGRITCLCQVP 906


>gi|225351924|ref|ZP_03742947.1| hypothetical protein BIFPSEUDO_03528 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157171|gb|EEG70510.1| hypothetical protein BIFPSEUDO_03528 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 892

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/922 (33%), Positives = 485/922 (52%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++F+K+GH ++PS+SLI  N PT +FT +GMVPF     G++ P    +
Sbjct: 1   MRTSEIAKRYLDYFEKHGHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKSRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +        L   +IDTG GL
Sbjct: 175 VDRGPEY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+++++G  Y  +    V  R++ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG T+P+M  LLP     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTDPVMPTLLPTSKAAMEPSYPELNDTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G  + D  ++   +   + ++G+ AFKL+DT+G P++I  ++  
Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDLAVAKAKESGSDAVSGEDAFKLHDTYGFPIEITLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+  V        +EV+ D+TPFYA+A
Sbjct: 471 ---------------------SARAKVLGIMQEGKGSVPAVTGPATIEVILDRTPFYAQA 509

Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D    L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + S+E  VN+ +
Sbjct: 570 ARAHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNSVEARVNEKL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +NL V T+ M  +DAIA GA  L G KY D VRVVS+        S  LCGGTH+   G
Sbjct: 630 RENLAVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIGE---DGWSRELCGGTHIDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ G+ A      +   +  L+  +      +  RV  +
Sbjct: 687 KIGAINIMSEASIGSGVRRVDAVVGESAYEFNAREHALVSQLSDMVNARPDELADRVNAL 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816
               ++     A   + +L  +V  L     A    V   +  +    S   L+  +  +
Sbjct: 747 LARLKESDRRLATMYESQLAASVPALVSETKASQAPVKVAAKNVEHFGSFDALRKTVLDV 806

Query: 817 QKKIQS---GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G+++E K  V +   E        A DL R ++K+LGGGG GG+P
Sbjct: 807 RGQLGEEFPVVVALAGVNEEGKPMVAVATNEAARKQGIKAGDLVRGASKILGGGG-GGKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG +  K ++A+  +A 
Sbjct: 866 DFAQGGGADATKINEALEALAD 887


>gi|269218535|ref|ZP_06162389.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211646|gb|EEZ77986.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 888

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/921 (34%), Positives = 494/921 (53%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F K+ H + PS SL+   DP+++FT +GMVPF       E   +  V
Sbjct: 1   MRTAEIRQRWLDYFAKHDHHIAPSVSLVSP-DPSILFTVAGMVPFIPYILNTEPAPWPTV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVGRT RH TFF+M GNFSFG YFKE AI LAW LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGRTTRHGTFFQMNGNFSFGDYFKEGAIDLAWGLLTSSLAEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+++ED  ++  W ++ GL +D I ++   +  WS  + GP G C EI 
Sbjct: 116 GYGLDGDRLWMTIWEEDAVSYDYWTRVIGLPSDHIQKLPFKEISWSTGQPGPAGACCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230
           +D+G    P G P +  +G+R++EIWNLVF +F +   +         L + +IDTG GL
Sbjct: 176 YDRGPEYGPDGGPAADVQGDRFLEIWNLVFDEFVRGEGEGHDFELVGKLERTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ID    +I+A+E++ G KY  +  + V  RV+ DH+RSS  LI D
Sbjct: 236 ERIAYLLQGKANMYEIDEVYPVIRATEEIAGKKYGADAEDDVRMRVVADHVRSSLMLIGD 295

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RRA+   RLLG  + ++  L+      M  +YPEL      I 
Sbjct: 296 GVRPGNDGRGYVLRRLIRRAVRSIRLLGVDDVVLPSLIATSKDAMKDSYPELEAEFSRIL 355

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           +   +E+  F +TL  G  + D   S     +++L+G  AF L+DT+G P+D+  ++   
Sbjct: 356 DVASAEEAAFRRTLASGTQIFDLAASKASGGNKVLSGKDAFALHDTYGFPIDLTLEMASE 415

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQFIGYDLLRG 465
           +GL  +D   F + ++EQ+ RARA +    +G  +   ++  L E  G+T+F+GY     
Sbjct: 416 QGLK-VDEGEFRRLMQEQKDRARADARAKKTGHVDSAVYNEILDESGGSTRFLGYSET-- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                G    + A++  G  V  A +  +V+VV DQTPFYAE G
Sbjct: 473 ---------------------GAEGKIVALLVDGVSVPAATAPAEVDVVLDQTPFYAEMG 511

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G  ++  G  +Q+ DVQ   +G+ VH   V  G +     +   ID   R Q++
Sbjct: 512 GQLADRGTISVEGGGLVQVDDVQSPVKGLNVHRGTVSEGTIAVGEKVFAQIDVDRRGQIA 571

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +H++TH++H AL   LG   +Q GS  +P  LRFD  H + I +  +  IE  VND + 
Sbjct: 572 RSHTSTHMIHKALHEFLGEQATQAGSENSPSRLRFDFRHGEQIPADVVMGIEGRVNDRLR 631

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +NL V   IM+ + A A+GA AL G KY   VRVVS++       S  LC GTHV STG+
Sbjct: 632 ENLEVTDEIMDLDKARAAGAMALFGEKYGKEVRVVSIDDS----WSKELCAGTHVPSTGK 687

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L+ I+ ESSI +G+RRI+A+ G+ A ++   +   +  LA  +      +  R++ + 
Sbjct: 688 IGLVSILGESSIGSGVRRIDALVGEGAYAYGAKEHALVSQLAGIVGARPEELPERIDAVL 747

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEV-DSKELKSVMDALQK 818
              +  +   A  + +     +        +I   +     +  V    ++++V   ++ 
Sbjct: 748 SRLKSAEKEVAALRREKLSARVGDILGGRRRIGKFDLYWAGLGNVASGDDVRTVATDVRG 807

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      +++VG     + SV++  T         A  L    +K+LGGGG GGR  +A
Sbjct: 808 RIDDSEAAVVVVGGVVNGRPSVVVATTSAARQAGARAGKLVSSFSKILGGGG-GGRDDVA 866

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG + +K  +A+  + + L
Sbjct: 867 QGGGQDPSKLLEALEDLEAQL 887


>gi|189218662|ref|YP_001939303.1| Alanyl-tRNA synthetase [Methylacidiphilum infernorum V4]
 gi|205830140|sp|B3E044|SYA_METI4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|189185520|gb|ACD82705.1| Alanyl-tRNA synthetase [Methylacidiphilum infernorum V4]
          Length = 926

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/969 (33%), Positives = 464/969 (47%), Gaps = 128/969 (13%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
           M N + IR +FL+FF++ GH +LPS+SL+P + P L+FTN+GM PF   F G++K  Y  
Sbjct: 1   MMNSNEIRQSFLDFFKERGHTILPSASLVPES-PNLLFTNAGMNPFVPFFLGKQKCPYVP 59

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +   QKC+RAGGKHNDL+ VG    HHTFFEMLGN+SF  YFKE AI  AW+LLT+++
Sbjct: 60  PRIADSQKCLRAGGKHNDLEEVGYDTYHHTFFEMLGNWSFNDYFKEEAIHWAWELLTQKW 119

Query: 119 DLDQRRLYITVYDE--------DEEAFKLW----KKISGLSADKIIRITTNDNFWSMAET 166
              + R+Y TVY          DEEAF++W    +K        I   T  DNFW M ET
Sbjct: 120 GFPKERIYATVYKPAPDEPGEFDEEAFRIWFKLFQKAKLNPLLHIHFGTKKDNFWMMGET 179

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPCSEI  D            ++     IEIWNLVF+Q          +LP   +DT
Sbjct: 180 GPCGPCSEIHIDLTPDGQSEGKLINKNSPLCIEIWNLVFIQLNANEDGSFSLLPSRHVDT 239

Query: 227 GMGLERMATVLQEKT---------NNYDIDLFKHLIQASEQVTGMKY------------- 264
           GMGLER+  ++Q  +         ++YD DLF  LI+  + ++ + Y             
Sbjct: 240 GMGLERVCAIIQGTSSFRQFNRTISDYDTDLFIPLIEKLQDISKVSYTGSIPPTPDFALD 299

Query: 265 -EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323
            +    +  RVIVDH+R+ +F IADGILP+N GRG+VLRR++RRA+ + ++LG   P + 
Sbjct: 300 PQLKKDIAFRVIVDHVRALAFAIADGILPSNLGRGHVLRRLLRRAIRFGQILGVNPPFLF 359

Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEI 381
            ++  L   MGS YPELI  +  IEE + SE+E F +TL  GL L + +   +   K + 
Sbjct: 360 EMVDPLVKIMGSHYPELIDKQGHIEEVISSEEELFARTLSHGLALFEEIKQKMIAEKRKE 419

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           ++G  AF LYDT+G PLD+ Q +   +G + +D   F + + EQR R+            
Sbjct: 420 ISGKEAFVLYDTYGFPLDLTQLLAKEQGFS-VDTQGFERLMAEQRRRSLLSHEE------ 472

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
                 +      +QF+GY+ L     +                                
Sbjct: 473 -----DIVSLTKTSQFVGYEELEAEAEVVVLLSANR------------------------ 503

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
                       +FD+TPFYAE GGQ+GD G  + D  ++++ D  K A G  VH     
Sbjct: 504 -----------AIFDRTPFYAEMGGQVGDKGYVVFDQKKIEVLDTMKSASGAHVHRLAFT 552

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
             + +    + L +D + RR ++ +H+ATHLLH AL  +LG    Q GS + PD LRFD 
Sbjct: 553 DDL-KPGSRVYLQVDEKRRRCIAAHHTATHLLHWALRKVLGPETLQRGSYVGPDRLRFDF 611

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVS 680
           +H+ P+++ EL  IE  VN+ I  N PV     + E    +     L G KY  RVR+VS
Sbjct: 612 SHTGPLSAEELAEIERLVNEKIELNDPVTAEEESYEKVKNNPDILQLFGEKYGQRVRIVS 671

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           V     G +S  LCGGTHV STGEI    I+ E  + AGIRRIEA  G+     L  Q  
Sbjct: 672 V-----GRYSKELCGGTHVRSTGEIGYFKILGEYGVSAGIRRIEAACGKALEQFLHAQAA 726

Query: 741 KLKSLASFLKVSQGNVV----------------------GRVEEIWEEYRKLQLIHAKRK 778
           +       L     ++                         +    +E ++ + + AK++
Sbjct: 727 EQDKKWQILHSKDPSLPRLSKWVDTLDLDSLIEIFQRRNEELSSFEKEIKEREKLRAKKQ 786

Query: 779 L---------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                     Q         KI  +  +           L  + + + K+I S  + ++ 
Sbjct: 787 EENFRREASQQAMAAIAQVEKIGAIPVLFLDCDAKPQSYLPLLWNEISKRIDS--VAILA 844

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              E K ++ I V   L  +  A +L          G GGG   +AQ G  +  +     
Sbjct: 845 SRSEGKINLFIGVGPSLTTKIEARNLLSQLVASFE-GKGGGSKTIAQGGLKDSIEISSLF 903

Query: 890 AGVASFLKK 898
                 L++
Sbjct: 904 EKGRGILEQ 912


>gi|239622020|ref|ZP_04665051.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515211|gb|EEQ55078.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 893

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/927 (34%), Positives = 492/927 (53%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +D+EA  +W    G+  + I ++   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDDEARSMWINE-GVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +        L   +IDTG GL
Sbjct: 175 VDRGPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+EQ++G+KY  N   +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P++  L P     M ++YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+   E++ F +TL+ G  +LD  ++    D    ++ G+ AFKL+DT+G P+++  ++ 
Sbjct: 354 ESAYGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLR 464
             +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  + 
Sbjct: 414 AEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAE 523
                                    + V  I+Q+G+  V        VEV+ D+TPFYAE
Sbjct: 472 ----------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAE 509

Query: 524 AGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           AGGQL D G  + D    L++ DVQK  + + VH   +  G L     +   ID   R  
Sbjct: 510 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGA 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND 
Sbjct: 570 ITRSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  NL V T+ M  +DAIA GA  L G KY D VRVVS+        S  LCGGTHV   
Sbjct: 630 LRDNLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHV 686

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  
Sbjct: 687 GKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNA 746

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDA 815
           +  + ++     A   + +L  +V  L          +   +  V        L+  +  
Sbjct: 747 LLAKLKESDRRLASMYESQLAASVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLD 806

Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
           ++ ++      ++ L G++++ K  V +   E        A DL R +AKVLGGGG GG+
Sbjct: 807 VRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGG-GGK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P  AQ GG + +K D+A+  +    +K
Sbjct: 866 PDFAQGGGVDASKIDEALEALKHEAQK 892


>gi|23334993|ref|ZP_00120231.1| COG0013: Alanyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|23465456|ref|NP_696059.1| alanyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|189439479|ref|YP_001954560.1| alanyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|227545932|ref|ZP_03975981.1| alanine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|322688960|ref|YP_004208694.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
 gi|322690929|ref|YP_004220499.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|41018234|sp|Q8G5W9|SYA_BIFLO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|23326108|gb|AAN24695.1| alanyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|189427914|gb|ACD98062.1| Alanyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|227213566|gb|EEI81415.1| alanine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517003|emb|CBK70619.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum F8]
 gi|320455785|dbj|BAJ66407.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460296|dbj|BAJ70916.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
          Length = 893

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/927 (34%), Positives = 492/927 (53%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +D+EA  +W    G+  + I ++   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDDEARSMWINE-GVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +        L   +IDTG GL
Sbjct: 175 VDRGPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+EQ++G+KY  N   +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P++  L P     M ++YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+   E++ F +TL+ G  +LD  ++    D    ++ G+ AFKL+DT+G P+++  ++ 
Sbjct: 354 ESAYGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLR 464
             +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  + 
Sbjct: 414 AEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAE 523
                                    + V  I+Q+G+  V        VEV+ D+TPFYAE
Sbjct: 472 ----------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAE 509

Query: 524 AGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           AGGQL D G  + D    L++ DVQK  + + VH   +  G L     +   ID   R  
Sbjct: 510 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGA 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND 
Sbjct: 570 IARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  NL V T+ M  +DAIA GA  L G KY D VRVVS+        S  LCGGTHV   
Sbjct: 630 LRDNLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHV 686

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  
Sbjct: 687 GKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNA 746

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDA 815
           +  + ++     A   + +L  +V  L          +   +  V        L+  +  
Sbjct: 747 LLAKLKESDRRLASMYESQLAASVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLD 806

Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
           ++ ++      ++ L G++++ K  V +   E        A DL R +AKVLGGGG GG+
Sbjct: 807 VRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGG-GGK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P  AQ GG + +K D+A+  +    +K
Sbjct: 866 PDFAQGGGVDASKIDEALEALKHEAQK 892


>gi|254796550|ref|YP_003081386.1| alanyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
 gi|254589786|gb|ACT69148.1| alanyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
          Length = 848

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/898 (39%), Positives = 514/898 (57%), Gaps = 66/898 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  F++FF KNGH  LPS+SL+P +DP+LMF N+GMVPFK  F   +K  + ++ T QK
Sbjct: 5   LRKKFIDFFVKNGHTHLPSASLVPKDDPSLMFVNAGMVPFKEYFADVKKAPFSSIVTAQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L + +LY
Sbjct: 65  CVRAGGKHNDLENVGFTKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELKLSKEKLY 124

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ITVY ED+EAF++W K++G    KI RI+T+DNFW M + GPCGPCSEIF+D GE + G 
Sbjct: 125 ITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQMGDIGPCGPCSEIFYDHGEHLSGD 184

Query: 187 LPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           +P  +++ GER +EIWNLVFMQ+ ++   E   +    IDTGMGLER+A +L+   +NY 
Sbjct: 185 IPEDNKDPGERCVEIWNLVFMQYIRKQSGELARMECPCIDTGMGLERVAAILEGTDDNYK 244

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             LF+ +++ S++VTG K    N   H+VI DHLRS+SFLIADG+LP N GR YVLRRI+
Sbjct: 245 TKLFEAIVKESQKVTGNKD---NQAAHKVIADHLRSASFLIADGVLPGNTGREYVLRRII 301

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA+ Y+ +LG+   L+  L   L   MGS Y EL +AK LI +TL  E+E F  TL  G
Sbjct: 302 RRAVRYSHVLGFDTVLLPKLFWVLEECMGSYYQELTRAKNLILDTLTLEEESFRNTLKSG 361

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           + LL+ V S +   + L+GD+AF LYDTHG PLDI  D+L  +    +D   F + ++ Q
Sbjct: 362 MKLLEEVSSSMKGGDTLSGDIAFTLYDTHGFPLDITIDVLKEK-KISVDEERFAERMKMQ 420

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           R  A+A  +   + T+     ++  ++G T FIGY+   G                    
Sbjct: 421 RLLAQASRMNDTAQTSSYEVKAVFLEHGKTPFIGYENFTGL------------------- 461

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               +++ AI        E     ++ ++ DQT FY E+GGQ  D G   G+   L++  
Sbjct: 462 ----ALILAI-------TEKEGSNELTIILDQTIFYPESGGQESDQGIIEGENTTLKVEK 510

Query: 546 VQKKAEGIFVHHAIVERGILRT-EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           V K  EG+ +H   + +G   +    + L ID   R  L+ NHSATH+LHH L   LG+H
Sbjct: 511 VYKSTEGVILHECKIIKGQAISRGEKVNLKIDINRRNSLARNHSATHVLHHVLRKRLGTH 570

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           VSQ GS +TP+ LRFD +HS+PIT  EL  IED +N +I  + PV+T +   +DAI  GA
Sbjct: 571 VSQRGSLVTPNRLRFDFSHSQPITEEELSKIEDCINLMIWDDHPVITEVKKTDDAIRDGA 630

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             L G KY+D VRVVS+        +  LCGGTHV  +  I L+ I+S SS+  G+RRIE
Sbjct: 631 IGLFGEKYDDTVRVVSIGE------AVELCGGTHVKKSSSIGLVKILSASSVAHGVRRIE 684

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQLNV 783
           A+T   A  ++         + + L      +     ++    +  Q       +  +  
Sbjct: 685 AVTHLTALQYMRE------EIQAQL----YQLNEHQSKLKTMQKSHQKEITSVYQSIVAN 734

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            +    +   V  ++  +  +  + L S+   ++ +     ++++     +   +LI++ 
Sbjct: 735 AEAQTERYGSVEIVTKNVQGISREILLSLASGIRPRTG---VLIIHTELSEALYLLIILD 791

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGR-----PHMAQSGGPNGNKADQAIAGVASFL 896
           +++    + +D  +        G   G+     P++ Q+  P     D+ +  ++  +
Sbjct: 792 KEICKNISFIDSMKE-----RIGKSHGKVTPSVPYVIQATFPEKEDLDRCLKNLSKLV 844


>gi|119484060|ref|XP_001261933.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
 gi|119410089|gb|EAW20036.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
          Length = 961

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/981 (30%), Positives = 470/981 (47%), Gaps = 119/981 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
               +R TFL++F++NGH  +PSS ++P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 12  TAKRVRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAK 71

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK 
Sbjct: 72  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKV 131

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD +RLY+T ++         D EA  LW+  +G+  D I+     DNFW M + GPC
Sbjct: 132 YGLDPQRLYVTYFEGHEEGGLEPDLEAKALWRA-AGVPEDHILPGNMKDNFWEMGDQGPC 190

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+Q+ +++ +    LP   +DTGMG
Sbjct: 191 GPCSEIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTGMG 249

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F  L  A + +          G          +RV+ DH+R
Sbjct: 250 FERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGMFGADDSDGIDTAYRVVADHVR 309

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           + +F I+DG+ P ++GRGYV+RR++RR   YAR     E       ++P L  ++G  +P
Sbjct: 310 TLTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDMFP 369

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           EL + +  + E L  E+  F KTLDRG    +     + +  D+ L+G   ++LYDT G 
Sbjct: 370 ELKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTFGF 429

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL   D+          R RA+  S G     T  +   + +      
Sbjct: 430 PVDLTRLMAEERGLNIDDLEFEEA-----RLRAKEASKGQKKSATGTVKLDVHDLG---- 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                     K  K +               +++ +KAI           +   G+++ +
Sbjct: 481 ----------KLEKMNDVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGEQIGI 530

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T FYAE GGQ  DTG  I DG         +   G  +H   ++ G      +++ 
Sbjct: 531 ILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQLYAGYVLHTGFMKYGSFSIGDAVLC 590

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   +T  EL+
Sbjct: 591 EYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEKELE 650

Query: 634 SIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVR-----------VVSV 681
            IE+   + I QN  V    +        SG  A+ G  Y D VR           + +V
Sbjct: 651 KIEEISTEYIRQNCDVYSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVEVEEILKNV 710

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736
           E       S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A          
Sbjct: 711 EDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDAHEVQRVAKEF 770

Query: 737 --------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772
                          ++++ K +   L     + V +           +++ +  +  Q 
Sbjct: 771 EKRLDRLDAMALGPQKEQEAKQIQVELNQLSISAVQKSRFRERFASINKQVIDGQKAQQK 830

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830
           +  K+ L+  +             +   +    ++K +   ++ ++ K+Q   + +L G 
Sbjct: 831 LETKKALEAIISYFESPTNEGKTCLVTRLPISANAKAVSESLNYVKSKLQDKTVYVLAGD 890

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKV------------LGGGGGGGRPHMAQS 877
           S++ + +    V++ LLD   +A DLA + + V            +G             
Sbjct: 891 SEQGRVAHGCYVSKALLDQGASANDLAAVVSSVVGGKAGGKGSTSIGN------------ 938

Query: 878 GGPNGNKADQAIAGVASFLKK 898
            G + +K + AIA  + +L K
Sbjct: 939 -GVHPDKIEDAIALASDYLAK 958


>gi|329946643|ref|ZP_08294055.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526454|gb|EGF53467.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 903

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/936 (32%), Positives = 482/936 (51%), Gaps = 74/936 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L++F  N HE+ PS SL+    P+++FT +GMVPF     G E+  +   
Sbjct: 1   MRTSEIRSRWLDYFAANKHEIRPSVSLVSPE-PSILFTVAGMVPFIPYILGTEEAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVG T RH TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGVTTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T++++D+ +   W +  G+ A++I  +   D  WS  + GP G C EI 
Sbjct: 116 GYGLDGDRLWMTIWEKDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230
           +D+G    P G P    +G+R++EIWNLVF +F +   +         L + +IDTG GL
Sbjct: 176 YDRGPAYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279
           ER+A ++Q+K N Y+ID    +I+A+E+++G  Y             ++ V  RV+ DH+
Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIRAAEELSGKVYGRGSAGPEAGDAYHDDVRMRVVADHV 295

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS+  LI+DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL      M ++YPE
Sbjct: 296 RSALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKASYPE 355

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK------DEILNGDVAFKLYDT 393
           L  +   I E    E++ F +TL  G  +LD  ++   K        +++G  AF+L+DT
Sbjct: 356 LETSWSAISEIAFGEEDAFRRTLTAGTTILDTAVASAKKDAGRTGRPLMSGRSAFELHDT 415

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-- 451
           +G P+D+  ++   +G   +D  +F   + EQ+ RARA +    +G  +   F   EK  
Sbjct: 416 YGFPIDLTLEMAAEQG-VDVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEM 474

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            G + F+GY                         +   + V  ++  G       S  +V
Sbjct: 475 GGGSAFLGYTE-----------------------SSAEASVAGVLVDGVPQSVVTSPAEV 511

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           EV+ D+TPFYAE GGQL D G   + DG  +++ DVQ   +G+ VH   +  G +     
Sbjct: 512 EVILDRTPFYAEMGGQLADQGTIRLADGGTVEVNDVQAPVKGLHVHRGTLTEGTIAVGEK 571

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
               ID   R  ++  H++TH++H AL  I+  + +Q GS  +P  +RFD  H   +   
Sbjct: 572 AFAQIDVARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALAGE 631

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           ++  IE+ VN  ++++L V   +M+ + A A+GA AL G KY   VRVVS+    GG  S
Sbjct: 632 QVAGIEERVNAKLSEDLTVTDEVMDIDAARAAGAMALFGEKYGKEVRVVSI----GGDWS 687

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LC GTHV +TG I  + +V ESSI +G+RRI+A+ G  A  +   +   +  +++ + 
Sbjct: 688 KELCAGTHVPTTGHIGRIAVVGESSIGSGVRRIDALVGDGAYGYQAKEHALVSQISTMVG 747

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD 805
                +  RVE +    +  +   A  +        +        + +V   S  +  V 
Sbjct: 748 GRPEELPERVESLMTRLKDAEKRLAAAEQAALSARTAGIVSDAVPVGEVRLASANLGSVG 807

Query: 806 -SKELKSVMDALQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
            +  ++S+    + ++      ++ +  +   +   V+            A  L R +A+
Sbjct: 808 AADAVRSLTLDARSRLGDSEPAVVAVGAVLNSRPVIVVATNAGARDKGIRAGALVRTAAQ 867

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           VL GGG GG+  +AQ GG N +  D+A+  VA  ++
Sbjct: 868 VLDGGG-GGKDDLAQGGGQNPDALDEALRTVADQIR 902


>gi|312132886|ref|YP_004000225.1| alas [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773857|gb|ADQ03345.1| AlaS [Bifidobacterium longum subsp. longum BBMN68]
          Length = 893

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/927 (34%), Positives = 492/927 (53%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +D+EA  +W    G+  + I ++   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDDEARSMWINE-GVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +        L   +IDTG GL
Sbjct: 175 VDRGPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+EQ++G+KY  N   +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P++  L P     M ++YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+   E++ F +TL+ G  +LD  ++    D    ++ G+ AFKL+DT+G P+++  ++ 
Sbjct: 354 ESAYGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLR 464
             +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  + 
Sbjct: 414 AEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAE 523
                                    + V  I+Q+G+  V        VEV+ D+TPFYAE
Sbjct: 472 ----------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAE 509

Query: 524 AGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           AGGQL D G  + D    L++ DVQK  + + VH   +  G L     +   ID   R  
Sbjct: 510 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGA 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND 
Sbjct: 570 IARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  NL V T+ M  +DAIA GA  L G KY D VRVVS+        S  LCGGTHV   
Sbjct: 630 LRDNLAVATKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHV 686

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  
Sbjct: 687 GKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNA 746

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDA 815
           +  + ++     A   + +L  +V  L          +   +  V        L+  +  
Sbjct: 747 LLAKLKESDRRLASMYESQLAASVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLD 806

Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
           ++ ++      ++ L G++++ K  V +   E        A DL R +AKVLGGGG GG+
Sbjct: 807 VRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGG-GGK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P  AQ GG + +K D+A+  +    +K
Sbjct: 866 PDFAQGGGVDASKIDEALEALKHEAQK 892


>gi|609338|gb|AAC49007.1| cytoplasmic alanyl-tRNA synthetase [Saccharomyces cerevisiae]
 gi|1097386|prf||2113423A Ala-tRNA synthetase
          Length = 958

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/967 (30%), Positives = 463/967 (47%), Gaps = 93/967 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + +  LY+T ++ DE        EA +LWK   G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDSLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +     +   + + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E   A  
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKRTKSDLIKLNVHELSELNDA-- 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                           +           +  V   +  +      V+E    G+K  ++ 
Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + D       +  +   G   H   +E G L     ++ + 
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK +
Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648

Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           ED  N+ I +NL      I         G  A+ G  Y D VRVVSV             
Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH--LMGQ--- 738
           E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A     L  Q   
Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768

Query: 739 --------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                         ++KLK L   L       +++  +  +  +I +  +      AK++
Sbjct: 769 DLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKKE 828

Query: 779 LQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKI---QSGIIMLVGISK 832
            +  ++++        +  ++   I    ++K +   ++ ++         I +L G   
Sbjct: 829 NKQTLDEVKTFLQTNENAPYLVKFIDISPNAKAITEAINYMKSNDSVKDKSIYLLAGNDP 888

Query: 833 EKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E + +    ++   L    +   LA+  + ++GG   GG+ ++ Q  G        A+  
Sbjct: 889 EGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKA-GGKGNVFQGMGDKPAAIKDAVDD 947

Query: 892 VASFLKK 898
           + S  K+
Sbjct: 948 LESLFKE 954


>gi|302838115|ref|XP_002950616.1| hypothetical protein VOLCADRAFT_120886 [Volvox carteri f.
            nagariensis]
 gi|300264165|gb|EFJ48362.1| hypothetical protein VOLCADRAFT_120886 [Volvox carteri f.
            nagariensis]
          Length = 1143

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/981 (31%), Positives = 456/981 (46%), Gaps = 115/981 (11%)

Query: 8    RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVP---------------------- 45
            R  F EFF+   H    SSS++P NDPTL+FTN+GM                        
Sbjct: 183  RAAFNEFFETKAHTYWASSSVVPHNDPTLLFTNAGMNQASDQSQGQANWQHHHAYLPHSW 242

Query: 46   FKNIFTGQEKPVY-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG 100
            FK +F G   P       +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG 
Sbjct: 243  FKPVFLGTVDPNSDMGKLKRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 302

Query: 101  YFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKII 152
            YFKE AI  AW+LLTK + L   RLY T +          D+EA ++W +   L   +++
Sbjct: 303  YFKEEAISWAWELLTKWYKLPADRLYATYFRGDPGQGLPADDEAREIWLRF--LPESRVL 360

Query: 153  RITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN 212
                 +NFW M + GPCGPC+EI FD+           + +    +EIWN VF+QF ++ 
Sbjct: 361  PYGNKENFWEMGDQGPCGPCTEIHFDRI-GGRDAADLVNADDPNVLEIWNNVFIQFNREP 419

Query: 213  KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMK 263
                  LP   +DTGMGLER+ +VLQ K +NY  DLF  +  A +QVT         G +
Sbjct: 420  DGTLKTLPAKHVDTGMGLERITSVLQGKMSNYATDLFGPIFDAIQQVTGARTYTDKIGKE 479

Query: 264  YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLM 322
                  + +RV+ DH+R+ SF IADG  P NEGR YVLRRI+RRA+ Y R  LG  E   
Sbjct: 480  DADGVDMAYRVVADHIRTLSFSIADGARPGNEGRDYVLRRILRRAVRYGRETLGAKEGFF 539

Query: 323  MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
              L+  +    G  +PEL++ +  I   LR E+  F +TL +G+       +    D  +
Sbjct: 540  AGLVDVVVANFGGFFPELVKQRDTIYSVLREEEAAFSRTLVKGIERFKKA-ASAATDNKI 598

Query: 383  NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
             G  AF L+DT+G P+D+ Q +   RG+  +D+ ++  AL E R ++R            
Sbjct: 599  PGYEAFVLWDTYGFPVDLTQLMAEERGMT-VDMPAYEAALNEAREKSRQGGKKAAGAGI- 656

Query: 443  KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
                         +F        + +++ +   L    P   ++ VS+ V AI+  G  V
Sbjct: 657  -------------KF----EAEATGWLQSNGVPLTNDAPKYGSSDVSAKVLAILTPGGFV 699

Query: 503  ----EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
                E A     V +V D T FYAE+GGQ+GDTG   G      +    + A G  +H  
Sbjct: 700  ASTSEAADQDGPVGLVLDTTSFYAESGGQIGDTGAIRGPEGAALVVSDCQVAAGFVLHVG 759

Query: 559  IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                   R    + +++DY+ R  +  NH+ TH+L+ AL + LG HV Q GS + PD LR
Sbjct: 760  EASVAPFRVGDEVTVSVDYERRSLIKPNHTFTHVLNFALKSTLGDHVDQKGSIVLPDKLR 819

Query: 619  FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVR 677
            FD +++ P+ + +L ++E    + +A  +PV +  +   +    +G  A+ G  Y D VR
Sbjct: 820  FDFSNAGPVEANQLAAVEKICREAVAAAMPVHSGEVPLAQARSINGLRAVFGEVYPDPVR 879

Query: 678  VVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            VVS+                   S   CGGTH+S+T E     ++SE  I  GIRRI A+
Sbjct: 880  VVSIGRAVEELLADPKDAANAAFSIEFCGGTHLSNTSEAEAFALLSEEGIAKGIRRIVAV 939

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---IHAKRKLQLNV 783
            T   A   +    +    LAS   + +  +    +   E      +     A  + +L V
Sbjct: 940  TRGDAVRAIEAAADLKAELASIATLPEDQLEKACKGFKESVDAAVIPAVDKAALRDELAV 999

Query: 784  EDLSCHKIA-------------------------DVNFMSHIIS-EVDSKELKSVMDALQ 817
                  +                             +F+   +   +D++ +     A+ 
Sbjct: 1000 LGRRVIEFQKAAAAANKALAAERAVAAADAAVAAGKSFVIGRLDVGLDTRAVGEACSAII 1059

Query: 818  KKIQSGIIMLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             K  +   + V +  E  KA     V + + DR  A +    +   LGG G GG+ + AQ
Sbjct: 1060 AKHSTLAALFVSVDAEKGKALAYAAVPDSVTDRLKANEWVSTALGPLGGKG-GGKANNAQ 1118

Query: 877  SGGPNGNKADQAIAGVASFLK 897
              G N  K D+A+    +F +
Sbjct: 1119 GQGANVEKVDEALGAATAFAE 1139


>gi|317482215|ref|ZP_07941237.1| alanyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916353|gb|EFV37753.1| alanyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 893

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/927 (34%), Positives = 492/927 (53%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +D+EA  +W    G+  + I ++   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDDEARSMWINE-GVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +        L   +IDTG GL
Sbjct: 175 VDRGPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+EQ++G+KY  N   +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P++  L P     M ++YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+   E++ F +TL+ G  +LD  ++    D    ++ G+ AFKL+DT+G P+++  ++ 
Sbjct: 354 ESAYGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLR 464
             +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  + 
Sbjct: 414 AEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAE 523
                                    + V  I+Q+G+  V        VEV+ D+TPFYAE
Sbjct: 472 ----------------------SARAEVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAE 509

Query: 524 AGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           AGGQL D G  + D    L++ DVQK  + + VH   +  G L     +   ID   R  
Sbjct: 510 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGA 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND 
Sbjct: 570 IARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  NL V T+ M  +DAIA GA  L G KY D VRVVS+        S  LCGGTHV   
Sbjct: 630 LRDNLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHV 686

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  
Sbjct: 687 GKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNA 746

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDA 815
           +  + ++     A   + +L  +V  L          +   +  V        L+  +  
Sbjct: 747 LLAKLKESDRRLASMYESQLAASVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLD 806

Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
           ++ ++      ++ L G++++ K  V +   E        A DL R +AKVLGGGG GG+
Sbjct: 807 VRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGG-GGK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P  AQ GG + +K D+A+  +    +K
Sbjct: 866 PDFAQGGGVDASKIDEALEALKHEAQK 892


>gi|15617007|ref|NP_240220.1| alanyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11134963|sp|P57483|SYA_BUCAI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|25293087|pir||B84977 alanine-tRNA ligase (EC 6.1.1.7) [imported] - Buchnera sp.  (strain
           APS)
 gi|10039072|dbj|BAB13106.1| alanyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 878

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/911 (34%), Positives = 508/911 (55%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF++ GH ++PSSSL+P ND TL+FTN+GM  FK IF G++K  Y  V
Sbjct: 3   KTTDKIRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            TVQ+C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT  K F+
Sbjct: 63  ATVQRCLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + Q +L+I+VY +D E +K+W  I  + +++IIRI          +NFW M +TGPCGPC
Sbjct: 123 IPQNKLWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D  + +        E    R++EIWN+VF++F + +K +   L   SIDTGMGLE
Sbjct: 183 TEIFYDYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY ID+F+ LI+   Q++ +     + ++ +VI DH+RS S++IAD IL
Sbjct: 243 RISAVLQNVYSNYHIDVFQKLIKNIAQLSSI--NNLDHISFQVIADHIRSCSYIIADNIL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGY+LRRI+RRA+ +   +G  +     L+ ++   MG     L + +  IE  L
Sbjct: 301 PSNEHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+ +F  TL++GL +L+  +  +  + IL+G  AF LYDT G P+D+  D+   + + 
Sbjct: 361 KIEEMQFSYTLEKGLKILNSEIEKID-NNILSGKTAFYLYDTFGFPIDLTSDVCREKNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID  S+  A E+Q+ ++  +     +     I            F GY           
Sbjct: 420 -IDYNSYELAKEKQKEQSNINKKFYKNYNNNIILND------TCIFEGYTKT-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+VK I    + V + +  +K  +  D+TPFY+E+GGQ+GD 
Sbjct: 465 ---------------ITRSLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDI 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +   +K  +    H   +  G +    SL   ID   R  + +NHSATH
Sbjct: 510 GQLYHKKSSFLVEKTKKYGKT-IGHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH  L  ILG  + Q GS +T   LRFD ++ K I +++++ IE+ +N  I  N+ + T
Sbjct: 569 LLHATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             +N E+A    A AL   +Y   VRVV +        S  LCGGTH   TG+I L  I+
Sbjct: 629 EELNLEEAKKKKAMALFDDQYGSIVRVVFI-----NNFSIELCGGTHTQRTGDIGLFKII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           S+SS+ +GI+RIEA+TGQ+A  +L  +D  +K ++  L  S  ++  + +++  + + L+
Sbjct: 684 SQSSVASGIKRIEAVTGQKAIDYLHEKDNYIKDISLLLNCSTVDIKEKTKKLTIKTKNLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + + N + +        +I     +++I  + + K L+ ++D L+K++++ II+
Sbjct: 744 KKIIQLQKKENTQYIKKILKNVTEIKGTKLLTNIFYDYEQKSLRMIVDQLKKELKNTIII 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +      + ++++ VT +LLD   A+ +  +      G G GG+  +A+ GG N  +  
Sbjct: 804 -LINIINNRFTIIVGVTRNLLDYITAIKIMEMIINKTNGKG-GGKKEIAEGGGANTKQLP 861

Query: 887 QAIAGVASFLK 897
             +  +  ++ 
Sbjct: 862 SILNTIKLWIN 872


>gi|317036398|ref|XP_001398230.2| alanyl-tRNA synthetase, cytoplasmic [Aspergillus niger CBS 513.88]
          Length = 1019

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/912 (31%), Positives = 439/912 (48%), Gaps = 93/912 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
               +R TFL++F++NGH  + SS ++P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 70  TSKRVRDTFLQYFKENGHTFVASSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFAN 129

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK 
Sbjct: 130 LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKDAIRYSWELLTKI 189

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD RRLY+T ++         D EA  LW K  G+  D I+     DNFW M + GPC
Sbjct: 190 YGLDPRRLYVTYFEGNKEGGLEPDLEAKDLW-KAVGVPEDHILPGNMKDNFWEMGDQGPC 248

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG
Sbjct: 249 GPCSEIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNRETDRSLRPLPNKHVDTGMG 307

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
            ER+ +VLQ K++NYD D+F  + Q    V          G          +RVI DH+R
Sbjct: 308 FERLVSVLQNKSSNYDTDVFTPIFQTIRDVTGAREYRGCFGSDDADGIDTAYRVIADHVR 367

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           +  F I+DG +P N+GRGYV+RR++RR   YAR     E       ++P +  ++G  +P
Sbjct: 368 TLMFAISDGAVPNNDGRGYVIRRVLRRGARYARKYFGVEIGNFFSKIVPTVVDQLGDMFP 427

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           EL + +  + E L  E+  F KTLDRG    +     +     + L+G   ++LYDT G 
Sbjct: 428 ELRRKQPDVMEILDEEEMSFAKTLDRGERQFEHYAQQAKAKGADKLHGADVWRLYDTFGF 487

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL   D           RSRA+  S G    + E +   + +      
Sbjct: 488 PVDLTRIMAEERGLQIDDREFEEA-----RSRAKEASRGQKKTSAETVKLDVHDLG---- 538

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                     K    +               +++ VKAI          +E   G+++ +
Sbjct: 539 ----------KLEAMNDVPKTDDTAKFGKGNITAQVKAIYHGKTFHSSTDEVPDGEQLGI 588

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T FYAE GGQ  DTG  + DG         +   G  +H   ++ G      +++ 
Sbjct: 589 ILDRTNFYAEQGGQENDTGKIVIDGQSELEVGDVQLYAGYVLHTGFMKYGSFSVGDTVIC 648

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+ AL T+LG  V Q GS +  + LRFD +H   I+  +L 
Sbjct: 649 EYDELRRWPIRNNHTGTHILNFALRTVLGDGVEQKGSLVAAEKLRFDFSHKSAISDKDLA 708

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
            IE+   + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV           
Sbjct: 709 RIEEISTEYIRQNCTVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVELGEILQNV 768

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736
                   S   CGGTHV  TG+I  L ++ E  I  GIRRI A+TG+ A          
Sbjct: 769 KDPRWKEVSIEFCGGTHVQKTGDIKDLIVLEEGGIAKGIRRIIAVTGEDAHEVQRLAAEF 828

Query: 737 --------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEE----YRKLQL 772
                          ++++ K + + L       V +     R   I +E     + LQ 
Sbjct: 829 QKRLDLLEAMPLTPEKEKEAKQIQAELNQLSISAVQKSAFRERFARINKEVIDGQKALQK 888

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830
           + +K  L+         +  D +++   +    +SK +   ++ ++ K+    + +L   
Sbjct: 889 LESKVALETITNYFQAPENQDRSWLVAKLPISANSKAISESLNYVKSKLPDKSVYVLAAS 948

Query: 831 SKEKKASVLIVV 842
           + + + +    V
Sbjct: 949 TDQGRVAHGCYV 960


>gi|299751839|ref|XP_001830532.2| tRNA synthetase class II [Coprinopsis cinerea okayama7#130]
 gi|298409558|gb|EAU91282.2| tRNA synthetase class II [Coprinopsis cinerea okayama7#130]
          Length = 968

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/979 (30%), Positives = 450/979 (45%), Gaps = 107/979 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R  F E+F+   H  + SS  IP +DPTL+F N+GM  +K+IF G   P      
Sbjct: 12  TSRRVREEFFEYFRARDHTFVRSSPTIPFDDPTLLFANAGMNQYKSIFLGTVDPNSELSK 71

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLT+ 
Sbjct: 72  VKRAFNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIKYSWDLLTRV 131

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSM------ 163
           + L   RLY+T ++ D         EA + W +   L  D+++     DNFW        
Sbjct: 132 YGLSPDRLYVTYFEGDPANGLEPDLEAKECWLEY--LPEDRVLPGNAKDNFWGAWCHPPE 189

Query: 164 -------AETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
                     G      EI +D+           +++    +EIWN VF+QF ++     
Sbjct: 190 LDLANRRGRDGRYRSLREIHYDRI-GGRQAAHLVNQDDPDVLEIWNNVFIQFNREPDGTL 248

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------- 268
             LP   +DTGMG ER+ +V+Q+K +NYD D+F  +    ++++G++             
Sbjct: 249 KPLPAKHVDTGMGFERLVSVIQDKRSNYDTDVFTPIFAKIQELSGVRPYEGRFGADDADG 308

Query: 269 -IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHL 325
               +RV+ DH+R+ +F ++DG +P N GRGYVLRR++RR   YAR  LG         L
Sbjct: 309 IDTAYRVVADHVRTLTFALSDGGVPNNVGRGYVLRRVLRRGSRYARKKLGVPIGSFFSSL 368

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILN 383
           +P +   MG  +PE+ +    I+E L  E+E F +TLDRG  L D   +       + L+
Sbjct: 369 MPVVVETMGDIFPEITKKVDDIKEILDEEEESFSRTLDRGEKLFDQYAAKAKAEGRKELS 428

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G   ++LYDT+G P+D+ + +    GL   D   F +A  + +  ++  +    +   + 
Sbjct: 429 GADVWRLYDTYGFPVDLTRLMAEELGLGINDAE-FEEAQRKSKEASKGTAKKDTAEIVKL 487

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
               L                     K+D            T  +++ VKAIV   + + 
Sbjct: 488 DVHELA-----------------ILEKDDSVPKTDDSAKFGTGNITATVKAIVYDKKFLT 530

Query: 504 E---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                       V+ D+T FYAE+GGQ  DTG  + DG         +   G  VH   +
Sbjct: 531 STQDIPEDATFGVILDKTSFYAESGGQEYDTGNIVIDGAADFEVTNVQVYNGYVVHTGHL 590

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           + G L     ++ + D   R  L  NH+ATH+L+ AL  +LG HV Q GS + P  LRFD
Sbjct: 591 KYGQLDVGSEVISSYDELRRWPLRNNHTATHILNFALREVLGDHVDQKGSLVAPTKLRFD 650

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV 679
            +H   IT  EL  IE    D I +N+ V  + ++   A    G  A+ G  Y + VRVV
Sbjct: 651 FSHKAGITLPELTKIESMSIDWIKKNVKVYGKDLDLNLAQKIPGLRAVFGETYPNPVRVV 710

Query: 680 S-----------VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           +           +E       S   CGGTHV+ TG+I    I  ES I  GIRRI A+TG
Sbjct: 711 TLEYSVDEIAADIENPKWRQTSIEFCGGTHVAKTGDIKGFVITEESGIAKGIRRIIAVTG 770

Query: 729 QRARS---HLMGQDEKLKSLASF--------LKV-------------SQGNVVGRVEEIW 764
             A          +EKL    +         LK               +  +  ++  + 
Sbjct: 771 HEAAEVTRVAQALEEKLNQADALDGKAKDAALKALTVELGQADISVLKKAELKDKLNAMR 830

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQ 821
           + + K          +  +ED   H + + N   +++ + +  ++K L+S+  A +K  +
Sbjct: 831 KAFDKAVKEKEAAAGKKALEDFQKHFVENPNAQVYIALVEAGGNAKLLQSIATAARKAEK 890

Query: 822 SGIIMLVGISKE-KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           S  I +     E  K   +  V  +L     +A   A     ++ GG  GG+   AQ  G
Sbjct: 891 S--IYVFSHDAEQGKVPHVNYVAPNLKAQGVDARQWAAKVTDLI-GGKAGGKEESAQGVG 947

Query: 880 PNGNKADQAIAGVASFLKK 898
              +K  +AIA     ++K
Sbjct: 948 SEASKLQEAIAAARQHVEK 966


>gi|219682314|ref|YP_002468698.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219622047|gb|ACL30203.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086140|gb|ADP66222.1| alanyl-tRNA synthetase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086713|gb|ADP66794.1| alanyl-tRNA synthetase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087298|gb|ADP67378.1| alanyl-tRNA synthetase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087809|gb|ADP67888.1| alanyl-tRNA synthetase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 878

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/911 (34%), Positives = 508/911 (55%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF++ GH ++PSSSL+P ND TL+FTN+GM  FK IF G++K  Y  V
Sbjct: 3   KTTDKIRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            TVQ+C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT  K F+
Sbjct: 63  ATVQRCLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + Q +L+I+VY +D E +K+W  I  + +++IIRI          +NFW M +TGPCGPC
Sbjct: 123 IPQNKLWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D  + +        E    R++EIWN+VF++F + +K +   L   SIDTGMGLE
Sbjct: 183 TEIFYDYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY ID+F+ LI+   Q++ +     + ++ +VI DH+RS S++IAD IL
Sbjct: 243 RISAVLQNVYSNYHIDVFQKLIKNIAQLSSI--NNLDHISFQVIADHIRSCSYIIADNIL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGY+LRRI+RRA+ +   +G  +     L+ ++   MG     L + +  IE  L
Sbjct: 301 PSNEHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+ +F  TL++GL +L+  +  +  + IL+G  AF LYDT G P+D+  D+   + + 
Sbjct: 361 KIEEMQFSYTLEKGLKILNSEIEKID-NNILSGKTAFYLYDTFGFPIDLTSDVCREKNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID  S+  A E+Q+ ++  +     +     I            F GY           
Sbjct: 420 -IDYNSYELAKEKQKEQSNINKKFYKNYNNNIILND------TCIFEGYTKT-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+VK I    + V + +  +K  +  D+TPFY+E+GGQ+GD 
Sbjct: 465 ---------------ITRSLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDI 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +   +K  +    H   +  G +    SL   ID   R  + +NHSATH
Sbjct: 510 GQLYHKKSSFIVEKTKKYGKT-IGHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH  L  ILG  + Q GS +T   LRFD ++ K I +++++ IE+ +N  I  N+ + T
Sbjct: 569 LLHATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             +N E+A    A AL   +Y   VRVV +        S  LCGGTH   TG+I L  I+
Sbjct: 629 EELNLEEAKKKKAMALFDDQYGSIVRVVFI-----NNFSIELCGGTHTQRTGDIGLFKII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           S+SS+ +GI+RIEA+TGQ+A  +L  +D  +K ++  L  S  ++  + +++  + + L+
Sbjct: 684 SQSSVASGIKRIEAVTGQKAIDYLHEKDNYIKDISLLLNCSTVDIKEKTKKLTIKTKNLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + + N + +        +I     +++I  + + K L+ ++D L+K++++ II+
Sbjct: 744 KKIIQLQKKENTQYIKKILKNVTEIKGTKLLTNIFYDYEQKSLRMIVDQLKKELKNTIII 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +      + ++++ VT +LLD   A+ +  +      G G GG+  +A+ GG N  +  
Sbjct: 804 -LINIINNRFTIIVGVTRNLLDYITAIKIMEMIINKTNGKG-GGKKEIAEGGGANTKQLP 861

Query: 887 QAIAGVASFLK 897
             +  +  ++ 
Sbjct: 862 SILNTIKLWIN 872


>gi|46108048|ref|XP_381082.1| hypothetical protein FG00906.1 [Gibberella zeae PH-1]
          Length = 957

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/966 (32%), Positives = 471/966 (48%), Gaps = 93/966 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE---KPVY-- 58
            + +R TF E+F++ GH ++PSSS++P NDPTL+FTN+GM  FK IF G      P+   
Sbjct: 10  AARVRKTFFEYFEQRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVGKTDPMASL 69

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +A    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK +
Sbjct: 70  KAAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWELLTKVY 129

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD  RLY+T ++ DE        EA +LW    G+  D I+     DNFW M + GPCG
Sbjct: 130 GLDPSRLYVTYFEGDEKLKLEPDLEAKELWIS-VGVPEDHILPGNMKDNFWEMGDQGPCG 188

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           + +    +E+WN VFMQ+++Q       LP   IDTGMG 
Sbjct: 189 PCSEIHYDKV-GGRNASSLVNMDDPMVVEVWNNVFMQYDRQKDGSLKSLPAKHIDTGMGY 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRS 281
           ER+ + LQ+  +NY  D F  L Q  ++V          G          +RV+ DH+R+
Sbjct: 248 ERLVSALQDTVSNYATDCFTPLFQKIQEVTGARPYTDKYGKDDADGIDTAYRVVADHIRT 307

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            SF IADG +P N+GRGYV+RR++RR + YAR     +       +LPAL  +MG  +PE
Sbjct: 308 LSFSIADGAVPNNDGRGYVIRRVLRRGVRYARKYFNADIGAFFSKILPALVDQMGEQFPE 367

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397
           L++ +  I+E L  E+  F KTLDRG    +   +   K+  + L GDV ++LYDT G P
Sbjct: 368 LVKKQQDIKEILDEEEVAFAKTLDRGEAQFEKYAAEATKNGAKKLQGDVVWRLYDTFGFP 427

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +   R L   D        +  + +AR  S  +                    F
Sbjct: 428 VDLTRLMAEERNLEIDDEEV-----KAAQDKAREASKAVKESVQ--------------TF 468

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK---VEVV 514
              ++ + S+  K+ +          L    ++ V+ I      ++      +   + ++
Sbjct: 469 AKLNVHQISELEKDLKVERTNDDAKFLLGDSNAQVQLIYDGTSFLKSTKDVPEKTALGLL 528

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D+T FYAE+GGQ+ DTG  + D +        +   G  +H+  +E G L +   ++  
Sbjct: 529 IDKTNFYAESGGQVADTGRIVIDDVAEFKVLDVQNYGGYVLHNGYIEYGTLSSGDKVICE 588

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NHS TH+L+H+L  +LG  V+Q GS +  D LRFD +H   +   ELK 
Sbjct: 589 YDELRRSPIRNNHSGTHILNHSLREVLGDEVNQKGSLVDSDKLRFDFSHKTGVKIEELKK 648

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           IE+  N+ I +   + ++ ++ E A    G  A+ G  Y D VRVVS+            
Sbjct: 649 IEEMSNEYIRRGQKIYSKEVDLEKARQIEGCRAVFGETYPDPVRVVSIGKDIDEMLADPK 708

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------ 736
             +   +S   CGGTHV  TG I  L ++ ES I  GIRRI A TG+ A           
Sbjct: 709 KPEWRQYSVEFCGGTHVEQTGLIKDLILIEESGIAKGIRRIIAYTGEAAHQVQREADEFS 768

Query: 737 -------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         ++ ++K+++  L       +++ +   R ++I       Q    K 
Sbjct: 769 KKIDALDQLPLGPEKEAQMKAVSVELSQLTISTLTKDDFNKRYQKINAAVTAEQKKRQKA 828

Query: 778 KLQLNVEDLSCH--KIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + +  ++ +  H     D   F+  +     SK L  V+   Q K +   + + G SKE+
Sbjct: 829 ESKTALDTVKKHFDTNKDAKWFVGRLPVGATSKALMEVVKHYQGKDKEKTVYVFGGSKEE 888

Query: 835 KASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            A    + V T        A   A   ++V+GG  GG  P   Q  G      D+ +   
Sbjct: 889 GAVAHGVYVGTHLASQGVTAEQWAASVSEVIGGRSGGKEPTR-QGQGTKPENLDEGVETA 947

Query: 893 ASFLKK 898
             +L +
Sbjct: 948 TKWLDE 953


>gi|219681759|ref|YP_002468145.1| alanyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471461|ref|ZP_05635460.1| alanyl-tRNA synthetase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624602|gb|ACL30757.1| alanyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 878

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/911 (34%), Positives = 508/911 (55%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF++ GH ++PSSSL+P ND TL+FTN+GM  FK IF G++K  Y  V
Sbjct: 3   KTTDKIRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            TVQ+C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT  K F+
Sbjct: 63  ATVQRCLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + Q +L+I+VY +D E +K+W  I  + +++IIRI          +NFW M +TGPCGPC
Sbjct: 123 IPQNKLWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D  + +        E    R++EIWN+VF++F + +K +   L   SIDTGMGLE
Sbjct: 183 TEIFYDYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY ID+F+ LI+   Q++ +     + ++ +VI DH+RS S++IAD IL
Sbjct: 243 RISAVLQNVYSNYHIDVFQKLIKNIAQLSSI--NNLDHISFQVIADHIRSCSYIIADNIL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGY+LRRI+RRA+ +   +G  +     L+ ++   MG     L + +  IE  L
Sbjct: 301 PSNEHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+ +F  TL++GL +L+  +  +  + IL+G  AF LYDT G P+D+  D+   + + 
Sbjct: 361 KIEEMQFSYTLEKGLKILNSEIEKID-NNILSGKTAFYLYDTFGFPIDLTSDVCREKNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID  S+  A E+Q+ ++  +     +     I            F GY           
Sbjct: 420 -IDYNSYELAKEKQKEQSNINKKFYKNYNNNIILND------TCIFEGYTKT-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+VK I    + V + +  +K  +  D+TPFY+E+GGQ+GD 
Sbjct: 465 ---------------ITRSLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDI 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +   +K  +    H   +  G +    SL   ID   R  + +NHSATH
Sbjct: 510 GQLYHKKSSFIVEKTKKYGKT-IGHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH  L  ILG  + Q GS +T   LRFD ++ K I +++++ IE+ +N  I  N+ + T
Sbjct: 569 LLHATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             +N E+A    A AL   +Y   VRVV +        S  LCGGTH   TG+I L  I+
Sbjct: 629 EELNLEEAKKKKAMALFDDQYGSIVRVVFI-----NNFSIELCGGTHTQRTGDIGLFKII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           S+SS+ +GI+RIEA+TGQ+A  +L  +D  +K ++  L  S  ++  + +++  + + L+
Sbjct: 684 SQSSVASGIKRIEAVTGQKAIDYLHEKDNYIKDISFLLNCSTVDIKEKTKKLTIKTKNLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + + N + +        +I     +++I  + + K L+ ++D L+K++++ II+
Sbjct: 744 KKIIQLQKKENTQYIKKILKNVTEIKGTKLLTNIFYDYEQKSLRMIVDQLKKELKNTIII 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +      + ++++ VT +LLD   A+ +  +      G G GG+  +A+ GG N  +  
Sbjct: 804 -LINIINNRFTIIVGVTRNLLDYITAIKIMEMIINKTNGKG-GGKKEIAEGGGANTKQLP 861

Query: 887 QAIAGVASFLK 897
             +  +  ++ 
Sbjct: 862 SILNTIKLWIN 872


>gi|227496182|ref|ZP_03926488.1| alanine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
 gi|226834265|gb|EEH66648.1| alanine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
          Length = 904

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/936 (33%), Positives = 483/936 (51%), Gaps = 75/936 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L++F   GHE+ PS SL+    P+++FT +GMVPF     G E+  +   
Sbjct: 1   MRTSEIRSRWLDYFASQGHEIRPSVSLVSPE-PSILFTVAGMVPFIPYILGTEQAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVGRT RH TFF+M GNFSFG YFKE AI  AWDLLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGRTTRHGTFFQMNGNFSFGDYFKEGAISYAWDLLTGPQSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T++++DE ++    K+ G+    + ++   +  WS  + GP G C EI 
Sbjct: 116 KYGLDGDRLWMTIWEKDEVSWNHLTKVIGVPQQHVQKLPFEEISWSTGQPGPAGACCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230
           +D+G    P G P +  +G+R++EIWNLVF +F +   +         L + +IDTG GL
Sbjct: 176 YDRGAQYGPDGGPVADAQGDRFLEIWNLVFDEFLRGEGEGHDFELVGKLDQTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279
           ER+A ++Q+K N Y+ID    +I A+E ++G KY              + V  RV+ DH+
Sbjct: 236 ERLAFIMQDKPNMYEIDEVYPVIAAAEAMSGKKYGLGAAGPSAGQAYEDDVRMRVVADHV 295

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS+  LI DG+ P N+GRGYVLRR++RRA+   RLLG  +  M  LL A    M  +YPE
Sbjct: 296 RSALMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVQDAAMPTLLTASKDVMKLSYPE 355

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDG-------VLSHLGKDEILNGDVAFKLYD 392
           L      I E   +E++ F +TL  G  +LD             G   ++ G VAF+L+D
Sbjct: 356 LETGWAQISEVAYAEEDAFRRTLAAGTTILDTAVAAAKEKAKDSGTKPVVPGSVAFELHD 415

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK- 451
           T G P+D+  ++   +G   +D ++F   + EQ+ RARA +    +G  +   F   EK 
Sbjct: 416 TSGFPIDLTLEMAAEQG-VEVDELAFRNLMAEQKERARADARAKKAGHADIRAFQEIEKA 474

Query: 452 -YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G + F+GY                         +   ++V  ++  G       +  +
Sbjct: 475 MGGGSTFLGYTE-----------------------SSAEAVVTGLLVDGVPQPAVTAPAE 511

Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           VEVV D+TPFYAE GGQL D G   + DG  +++ DVQ    G+ VH   +  G +    
Sbjct: 512 VEVVLDRTPFYAEMGGQLADQGVIRLADGGVVEVVDVQAPIRGLSVHRGRLTEGTIALGE 571

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
                ID   R  ++  H+ATH+++  L  ++  H  Q GS  +P  LRFD  H   +++
Sbjct: 572 RAYAEIDSARRLAIARAHTATHMVYAGLRQVVNEHADQAGSENSPSRLRFDFRHGSALSA 631

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            ++  IE  VND +AQ+L V T +M+ ++A  +GA AL G KY   VRVV++        
Sbjct: 632 GQVGDIEALVNDKLAQDLTVRTDVMSLDEARQAGAIALFGEKYGTEVRVVTIGD----GF 687

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              LCGGTHV STG I  + ++ ESSI +G+RRI+A+ G  A      +   +  + + +
Sbjct: 688 DKELCGGTHVPSTGHIGRVAVLGESSIGSGVRRIDALVGDGAYDFQAKEHALVSQVTAIV 747

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
                 +  R+  +    ++ +        A    +      S  ++      S  +  V
Sbjct: 748 GGRSDELPERIASLMTRLKEAEKKLAAAEQAAMVAKAAEVVDSAERVGGYLLASANLGSV 807

Query: 805 -DSKELKSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
             +  L+S++  +++++  G   ++ + G+S E+   ++            A DL R++A
Sbjct: 808 GSADALRSLVLDVRQRLGEGEPAVVAVGGVSGERPLVIVATNGAARDLGAKAGDLVRVAA 867

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           K LGGGG GG+P +AQ GG +    D+A+  ++  L
Sbjct: 868 KTLGGGG-GGKPDLAQGGGQDAAALDEALRALSHAL 902


>gi|306822871|ref|ZP_07456247.1| alanine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|309801116|ref|ZP_07695245.1| alanine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|304553503|gb|EFM41414.1| alanine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|308222005|gb|EFO78288.1| alanine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 892

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/922 (34%), Positives = 484/922 (52%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++FQK+ H ++PS+SLI  N PT +FT +GMVPF     G++ P    +
Sbjct: 1   MRTSEIAKRYLDYFQKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKNRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +        L   +IDTG GL
Sbjct: 175 VDRGPQY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+++++G  Y  +  ++   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG T+P++  L P     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRALGVTDPVLPTLFPVSKEAMVPSYPELESTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E+   E++ F +TL+ G  + D  ++   +    +++GD AFKL+DT+G P+++  ++  
Sbjct: 354 ESAYGEEDAFRRTLESGTEIFDLAVAKAKESGKTVVSGDDAFKLHDTYGFPIELTLEMAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 EQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+  V        +EV+ D+TPFYAEA
Sbjct: 471 ---------------------SARARVIGIMQEGKGSVPAVTGPANIEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D    L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E  VND I
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPARSVMDAVEARVNDRI 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T+ M  +DAIA GA  L G KY D VRVVS+        S  LCGGTH+   G
Sbjct: 630 RDNLSVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIGE---DGWSRELCGGTHIDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGAVNIMSEASIGSGVRRVDALVGQSAYEFNAREHALVSQLSDQLNARPDELAERVNTL 746

Query: 764 WEEYRKLQLIHAKR---KLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A     +L  +V  L     A    V   S  +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPALVADAKASQAPVKVASKNVGHFGSFDALRKTVLDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G++++ K  V +   +        A DL R ++K+LGGGG GG+P
Sbjct: 807 RGQLGEDMPVVVALAGVNEDGKPMVAVATNDAARKQGIKAGDLVRGASKILGGGG-GGKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG +  K D A+  +  
Sbjct: 866 DFAQGGGSDATKIDAALEALVD 887


>gi|321477760|gb|EFX88718.1| hypothetical protein DAPPUDRAFT_191289 [Daphnia pulex]
          Length = 987

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/989 (30%), Positives = 454/989 (45%), Gaps = 120/989 (12%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           + + IR  +++FF +K  H  + SSS IP +DPTL+F N+GM  FK +F G   P     
Sbjct: 6   SAAKIRQMYMDFFIEKKSHIYVHSSSTIPKDDPTLLFANAGMNQFKPLFLGTVDPNSDMS 65

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT 
Sbjct: 66  KWIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCTWAWELLTD 125

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            F L + RLY+T +          DEE  ++W  + GL A++I+  +  DNFW M + GP
Sbjct: 126 VFQLPKDRLYVTYFGGNENAGLQPDEECRQIWLSL-GLPAERILPGSMKDNFWEMGDVGP 184

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI FD+           + +    +EIWNLVFM F ++       LP+  ID GM
Sbjct: 185 CGPCSEIHFDRI-GGRDAAHLVNMDDPDVLEIWNLVFMTFNRETDSSLKPLPRKHIDCGM 243

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           G ER+ +V+Q+K +NYD D+F+ + +A ++ T                  + +RV+ DH 
Sbjct: 244 GFERLVSVIQDKRSNYDTDIFQPIFEAIQKGTNAPAYQGKVGAEDVNGVDMAYRVLADHA 303

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRR++RR + YA   L         L+P +C  +G  +P
Sbjct: 304 RTLTIALSDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAKPGFFASLVPTVCQVLGPTFP 363

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +   L+ + +  E+ +F KTL RG  LL+  +S L     L GDVA++LYDT+G P+
Sbjct: 364 EVNRDPQLVIDIINDEETQFLKTLTRGRDLLERTISKLNGQTTLPGDVAWRLYDTYGFPV 423

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-------EK 451
           D+ Q +   +GL+   +          + +A+  S G GSG  + I F +        + 
Sbjct: 424 DLTQLMSEEKGLSIDMVAYEEA-----KKQAQLLSQGKGSGVDDTIAFDVHAITELQNKG 478

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
              T            F    + V          +  +S V AI  Q    EE  SG + 
Sbjct: 479 VPPTD---------DSFKYNYKSVSDAVDSPYEFDVCTSKVIAIRFQKAFHEEVSSGVEC 529

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            ++ D+T FYAE+GGQ  D G     G    + T    +  G +V H     G LR    
Sbjct: 530 GILLDRTSFYAESGGQAYDEGFITKIGDEGTEFTVKNVQVRGGYVIHLGNVEGTLRVGDE 589

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L+ID   RR +  NH+ TH+L++AL  ++G+   Q GS + PD +RFD T+   +T  
Sbjct: 590 VKLSIDQSRRRLIMSNHTGTHVLNYALRQVVGNEADQRGSLVAPDRMRFDFTNKAAMTVD 649

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE------- 682
           ++K  E   N++I +N  V  +  +        G  A+    Y D VRVVS+        
Sbjct: 650 QVKQTERIANEMIRKNQEVYAKESSLVVAKAVQGLRAVFEETYPDPVRVVSIGIPVEQLE 709

Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                  G   S   CGGTHV  +G I    I +E +I  GIRRI AITG  A   L   
Sbjct: 710 ADPANPAGNSTSIEFCGGTHVKRSGHIGDFVISAEEAIAKGIRRIVAITGPEASKALKKA 769

Query: 739 DEKLKSL--------------ASFLKVSQG-----NVVGRVEEI------WEEYRKLQLI 773
           D   K +                 L V +      ++   V +        ++ R +   
Sbjct: 770 DLLQKEVDAVSAKVDAFVSQNDKTLSVKELSRIIVDLSDDVSQANIAYWKKDDLRNILKG 829

Query: 774 HAKRK--------------LQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQK 818
             KR               +    + L   ++    F+ H  +   +SK L   +  ++ 
Sbjct: 830 LKKRADDVERAIKAAVVNDVAEAAKKLVAEQVN-TPFIVHEFNAFSNSKALDGALKQVKS 888

Query: 819 KIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH--- 873
                  +   +  E  K  VL    +   DR   A +     + +L             
Sbjct: 889 LSPETAAIFFSVDAEANKIVVLAAAPKGANDRGLKANEWVADVSALL---------DGKG 939

Query: 874 -----MAQSGGPNGNKADQAIAGVASFLK 897
                 AQ+ G N     +A+    +F +
Sbjct: 940 GGSAGSAQATGNNPAGLAEAMKKAKAFAQ 968


>gi|322694715|gb|EFY86537.1| alanyl-tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 952

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/964 (31%), Positives = 464/964 (48%), Gaps = 96/964 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPVYQ--AV 61
           +R  F ++ ++ GH ++PS S++P +DPTL+FTN+GM  FK IF G   Q  P+      
Sbjct: 11  VREAFFDYMRQRGHTIVPSGSVVPYDDPTLLFTNAGMNQFKPIFLGTINQSDPMANLKRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK +RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI++AW++LTK + LD
Sbjct: 71  ADTQKVIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMAWEILTKVYGLD 130

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            +RLY T ++         D+EA +LW    G+  D+I+     DNFW M + GPCGP S
Sbjct: 131 PKRLYATYFEGNKELGLPPDDEAKQLWLD-IGMPEDQIVPGDMKDNFWEMGDQGPCGPSS 189

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWNLVFMQF++Q       LP   IDTGMG ERM
Sbjct: 190 EIHYDKI-GGRNAAHIVNKDDPMVVEIWNLVFMQFDRQKDGSLKPLPAKHIDTGMGFERM 248

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            + LQE  +NY  D F  L +  E+VTG++   +             +RVI DH+R+ SF
Sbjct: 249 VSALQETDSNYATDCFTPLFKQIEEVTGVRPYSDKYGKDDADGIDTAYRVIADHIRTLSF 308

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG +P ++GRGYV+RRI+RR + YAR     E       +LPAL + MG  +PEL++
Sbjct: 309 AITDGAVPNSDGRGYVIRRILRRGVRYARKYLKAEIGSFFSKILPALVSHMGDQFPELVK 368

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDI 400
            +L I+E L  E+E F +TLDRG    +   +   K+ +  L+GDV ++LYDT G P+D+
Sbjct: 369 KQLDIKEILDEEEEAFARTLDRGEAQFEKYAAKAAKNGVKKLDGDVVWRLYDTFGFPVDL 428

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RG     +      +   R +AR  S  + +         + +          
Sbjct: 429 TQIMAEERG-----LEIDEIEVSVAREKAREASKAVKASVDTFAKLDVHQI--------- 474

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVVFDQ 517
                   + + +          +       V+ I          +E      + ++ D+
Sbjct: 475 ------AQLDQQKVARTDDDAKFVKGDSKGKVQLIFDGKSFHNSTKELPKNTAIGILLDK 528

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE+GGQ+ DTG  + D +        +   G  +H   +E G L +   ++   D 
Sbjct: 529 TNFYAESGGQVADTGRIVIDDVVEFKVMDVQNYGGFILHSGYIEYGALSSGDEVICEYDE 588

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+H+L  +LG  ++Q GS +  + LRFD +H   +   EL+ IE 
Sbjct: 589 LRRSPIRNNHTGTHVLNHSLREVLGDDINQKGSLVDNEKLRFDFSHKSQVKIEELRKIET 648

Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEY-----------ED 685
             N+ I +N  + ++ +         G  A+ G  Y + VRVVS+             ++
Sbjct: 649 LSNEYIRRNSKIFSKDVDLDLARQIEGVRAVFGETYPNPVRVVSIGMDVDTMLKDPKKQE 708

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG-------- 737
              +S   CGGTHV  TG I  L +V ES I  GIRRI A TG  A              
Sbjct: 709 WRQYSVEFCGGTHVEQTGLIKDLILVEESGIAKGIRRIIAYTGDAAHQVQREAAEFSKKL 768

Query: 738 -----------QDEKLKSLASFLK------VSQGNVVGRVEEI----WEEYRKLQLIHAK 776
                      +D + K ++  L       +++  +  R ++I      E +K Q   A 
Sbjct: 769 DVLEAMPFGPAKDAQTKVISQELSQLVISTLAKDELNTRFQKIATSVVAEQKKRQKAEAG 828

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGISKEKK 835
             +   V+     K AD  F+  +    ++K L  V    Q K +   + +  G  +E  
Sbjct: 829 AAVGCVVKHFEEKKEADY-FVGRLPISANAKALTEVFKHFQAKDKTKSVYVFGGSQEEGA 887

Query: 836 ASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
               + V   L      A   A + + V+GG  GG  P   Q  G    K D A+     
Sbjct: 888 VVHGVYVGSGLASKGVTAEQWASVVSDVVGGRSGGKEPTR-QGQGTKPEKIDDAVEAARK 946

Query: 895 FLKK 898
           +L++
Sbjct: 947 WLEE 950


>gi|212716059|ref|ZP_03324187.1| hypothetical protein BIFCAT_00972 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661426|gb|EEB22001.1| hypothetical protein BIFCAT_00972 [Bifidobacterium catenulatum DSM
           16992]
          Length = 892

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/920 (34%), Positives = 484/920 (52%), Gaps = 64/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++F+K+GH ++PS+SLI  N PT +FT +GMVPF     G++ P    +
Sbjct: 1   MRTSEIAKRYLDYFEKHGHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKSRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +        L   +IDTG GL
Sbjct: 175 VDRGPEY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+++++G  Y  +    V  R++ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG T P+M  LLP     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTGPVMPTLLPTSKAAMEPSYPELNNTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G  + D  ++   +   + ++G+ AFKL+DT+G P++I  ++  
Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDLAVAKAKESGSDAVSGEDAFKLHDTYGFPIEITLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+  V        +EV+ D+TPFYA+A
Sbjct: 471 ---------------------SARAKVLGIMQEGKGSVPAVTGPANIEVILDRTPFYAQA 509

Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D    L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + S+E  VN+ +
Sbjct: 570 ARAHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNSVEARVNEKL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +NL V T+ M  +DAIA GA  L G KY D VRVVS+        S  LCGGTH+   G
Sbjct: 630 RENLAVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIGE---DGWSRELCGGTHIDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ G+ A      +   +  L+  +      +  RV  +
Sbjct: 687 KIGAINIMSEASIGSGVRRVDAVVGESAYEFNAREHALVSQLSDMVNARPDELADRVNAL 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + +L  +V  L     A    V   +  +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYESQLSASVPVLVAETKASQAPVKVAAKNVEHFGSFDALRKTVLDV 806

Query: 817 QKKIQS---GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G+++E K  V +   E        A DL R ++K+LGGGG GG+P
Sbjct: 807 RGQLGEENPVVVALSGVNEEGKPMVAVATNEAARKQGIKAGDLVRGASKILGGGG-GGKP 865

Query: 873 HMAQSGGPNGNKADQAIAGV 892
             AQ GG +  K D+A+  +
Sbjct: 866 DFAQGGGVDATKIDEALEAL 885


>gi|301165787|emb|CBW25359.1| alanyl-tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 878

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/918 (33%), Positives = 469/918 (51%), Gaps = 62/918 (6%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  ++   IR  FL++F+K+ H  + ++S++P NDPTL+F NSGM P K  F G+E+P  
Sbjct: 1   MKKLNSREIREKFLDYFEKHNHLKIKAASVVPQNDPTLLFINSGMAPLKPYFLGKEEPPN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + +   Q C+R      D+D+VG    H T FEM+G++S G Y+KE A  LA+ LL  E 
Sbjct: 61  KRLCNFQPCIRT----KDIDDVG-DRHHLTIFEMMGSWSIGDYYKELACSLAYGLLVDEL 115

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPC 169
             D +RLY TVY          D E+ + WKK  G+  D I+ +   DNFW    ETGPC
Sbjct: 116 GFDPKRLYFTVYGGNEALGIKPDHESVEAWKK-CGVPEDHIVMLGD-DNFWGPAGETGPC 173

Query: 170 GPCSEIFFDQGECIPGG--LPGSSEEGERYIEIWNL-VFMQFEQQNKQERFILPKMSIDT 226
           GPC+E+FFD G             ++  RYIEIWN  VFM+  ++       LP  S+DT
Sbjct: 174 GPCTEVFFDCGPEYGPEYKPGKHFDDVSRYIEIWNAGVFMELNKKKDGSFTPLPLKSVDT 233

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           G GLER+A V+    + Y+ DL + L+  S ++             R++ DH+R++ F++
Sbjct: 234 GSGLERLAMVMNGHDSVYETDLMQPLMDISHKLLKSDGSEAFTKKARMLTDHIRAAVFIL 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ++G+ P+NEG+GY+ RR++R+ +        ++     ++  +   M   YP++  AK +
Sbjct: 294 SEGVTPSNEGQGYIPRRLIRKCVAALMAKKASKIDFSEMVDLIVEMMSDYYPQIKSAKEM 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDIL 405
           I   L +E   F   +  GL L++  L+          G VAF L  THGLPLD+++  L
Sbjct: 354 ITYNLNNEINDFIPIVKTGLELIEKELAENKSSNKSFPGKVAFDLVTTHGLPLDVLKSDL 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             R    +D   +++  EE R  +R  S    SG  EK+   L  K   T F+GY+    
Sbjct: 414 SDR-EIELDQAEYDKCYEEHRKASRVISRKGASGDQEKV-EELVAKLSTTDFVGYE---- 467

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T   +S V  +++  E V+    G+       +TPFY E+G
Sbjct: 468 -------------------TEETTSKVNLLIKDSEKVDSVKEGESFLFTTVKTPFYGESG 508

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G A  D  +++I D  K  + I VH A V  G ++    + L +D + R  +  
Sbjct: 509 GQIGDCGWATTDSAKVEIVDTMKVGK-IHVHVANVISGEVKDGSEIQLKVDSEVRSDIKR 567

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL  ++G H  Q GS +  D LRFD  +   +T  EL  IE   N  I +
Sbjct: 568 NHSATHLLHAALHKVVGKHAVQKGSLVRSDRLRFDFQNQSAVTKEELDKIEALTNQWIME 627

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N    T +++ + AI  GA AL G KY+ +VRV+S      G +S  LCGGTHVS TG+I
Sbjct: 628 NSGSETDLLDYDAAIEKGAIALFGEKYDSKVRVISF-----GENSVELCGGTHVSRTGDI 682

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ I SESS+  GIRRIEA+TG+ A   L  ++  L+  +  L V       +++E+ +
Sbjct: 683 GLMLITSESSVAKGIRRIEAVTGREAYKLLQERNNILRKTSELLSVKPSEFESKIQELKK 742

Query: 766 EYRKLQLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           +    +    K        E+ +  +++        +++ ++  LK + D L  K +  I
Sbjct: 743 KSSAKKAAPKKVSATDTKFENENKIEVSGQKIFVAQLND-NADVLKDLGDQLLAKGEYKI 801

Query: 825 IMLVGISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I L G   + K       V +DL  +  A DL +   K + GG GGG+PH AQ G P+  
Sbjct: 802 ICLAG--NDGKTIRAFSWVGDDLNKKVKAGDLLKELLKPV-GGRGGGKPHFAQGGSPDVA 858

Query: 884 ---KADQAIAGVASFLKK 898
              K    I+ V SFLK+
Sbjct: 859 SMGKIFSNISNVESFLKE 876


>gi|70983336|ref|XP_747195.1| alanyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66844821|gb|EAL85157.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus Af293]
          Length = 1011

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/981 (30%), Positives = 467/981 (47%), Gaps = 119/981 (12%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
                +R TFL++F++NGH  +PSS ++P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 62   TAKRVRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAK 121

Query: 58   YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
             ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK 
Sbjct: 122  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKV 181

Query: 118  FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + LD +RLY+T ++         D EA  LW+  +G+  D I+     DNFW M + GPC
Sbjct: 182  YGLDPQRLYVTYFEGHEEGGLEPDLEAKALWRA-AGVPEDHILPGNMKDNFWEMGDQGPC 240

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPCSEI +D+           +++    +EIWN VF+Q+ +++ +    LP   +DTGMG
Sbjct: 241  GPCSEIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTGMG 299

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
             ER+ +VLQ+K++NYD D+F  L  A + +          G          +RV+ DH+R
Sbjct: 300  FERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGRFGADDSDGIDTAYRVVADHVR 359

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
            + +F I+DG+ P ++GRGYV+RR++RR   YAR     E       ++P L  ++G  +P
Sbjct: 360  TLTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDMFP 419

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
            EL + +  + E L  E+  F KTLDRG    +     + +  D+ L+G   ++LYDT G 
Sbjct: 420  ELKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTFGF 479

Query: 397  PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            P+D+ + +   RGL   D+          R RA+  S G     T  +   + +      
Sbjct: 480  PVDLTRLMAEERGLNIDDLEFEEA-----RLRAKEASKGQKKSATGTVKLDVHDLG---- 530

Query: 457  FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                      K  K +               +++ +KAI           +   G+++ +
Sbjct: 531  ----------KLEKMNVVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGEQIGI 580

Query: 514  VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            + D+T FYAE GGQ  DTG  I DG         +   G  +H   ++ G      +++ 
Sbjct: 581  ILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQLYAGYVLHTGFMKYGSFSIGDAVLC 640

Query: 574  TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   +T  EL+
Sbjct: 641  EYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEKELE 700

Query: 634  SIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVR-----------VVSV 681
             IE+   + I QN  V    +        SG  A+ G  Y D VR           + +V
Sbjct: 701  KIEEISTEYIRQNCDVYSQEVPLATARRISGVRAVFGETYPDPVRVVSVGVEVEEILKNV 760

Query: 682  EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736
            E       S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A          
Sbjct: 761  EDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDAHEVQRVAKEF 820

Query: 737  --------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772
                           ++++ K +   L     + V +           +++ +  +  Q 
Sbjct: 821  EKRLDRLDAMALGPQKEQEAKQIQVELNQLSISAVQKSRFRERFASINKQVIDGQKAQQK 880

Query: 773  IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830
            +  K+ L+  +             +   +    + K +   ++ ++ K+Q   + +L   
Sbjct: 881  LETKKALEAIISYFESPTNEGKTCLVTRLPISANPKAVSESLNYVKSKLQDKTVYVLAAD 940

Query: 831  SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKV------------LGGGGGGGRPHMAQS 877
             ++ + +    V++ LLD   +A DLA + + V            +G             
Sbjct: 941  LEQGRVAHGCYVSKALLDQGASANDLAAVVSSVVGGKAGGKGSTSIGN------------ 988

Query: 878  GGPNGNKADQAIAGVASFLKK 898
             G + +K + AIA  + +L K
Sbjct: 989  -GVHPDKTEDAIALASDYLAK 1008


>gi|159123802|gb|EDP48921.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus A1163]
          Length = 1011

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/981 (30%), Positives = 467/981 (47%), Gaps = 119/981 (12%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
                +R TFL++F++NGH  +PSS ++P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 62   TAKRVRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAK 121

Query: 58   YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
             ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK 
Sbjct: 122  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKV 181

Query: 118  FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + LD +RLY+T ++         D EA  LW+  +G+  D I+     DNFW M + GPC
Sbjct: 182  YGLDPQRLYVTYFEGHEEGGLEPDLEAKALWRA-AGVPEDHILPGNMKDNFWEMGDQGPC 240

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPCSEI +D+           +++    +EIWN VF+Q+ +++ +    LP   +DTGMG
Sbjct: 241  GPCSEIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTGMG 299

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
             ER+ +VLQ+K++NYD D+F  L  A + +          G          +RV+ DH+R
Sbjct: 300  FERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGRFGADDSDGIDTAYRVVADHVR 359

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
            + +F I+DG+ P ++GRGYV+RR++RR   YAR     E       ++P L  ++G  +P
Sbjct: 360  TLTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDMFP 419

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
            EL + +  + E L  E+  F KTLDRG    +     + +  D+ L+G   ++LYDT G 
Sbjct: 420  ELKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTFGF 479

Query: 397  PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            P+D+ + +   RGL   D+          R RA+  S G     T  +   + +      
Sbjct: 480  PVDLTRLMAEERGLNIDDLEFEEA-----RLRAKEASKGQKKSATGTVKLDVHDLG---- 530

Query: 457  FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                      K  K +               +++ +KAI           +   G+++ +
Sbjct: 531  ----------KLEKMNDVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGEQIGI 580

Query: 514  VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            + D+T FYAE GGQ  DTG  I DG         +   G  +H   ++ G      +++ 
Sbjct: 581  ILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQLYAGYVLHTGFMKYGSFSIGDAVLC 640

Query: 574  TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   +T  EL+
Sbjct: 641  EYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEKELE 700

Query: 634  SIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVR-----------VVSV 681
             IE+   + I QN  V    +        SG  A+ G  Y D VR           + +V
Sbjct: 701  KIEEISTEYIRQNCDVYSQEVPLATARRISGVRAVFGETYPDPVRVVSVGVEVEEILKNV 760

Query: 682  EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736
            E       S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A          
Sbjct: 761  EDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDAHEVQRVAKEF 820

Query: 737  --------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772
                           ++++ K +   L     + V +           +++ +  +  Q 
Sbjct: 821  EKRLDRLDAMALGPQKEQEAKQIQVELNQLSISAVQKSRFRERFASINKQVIDGQKAQQK 880

Query: 773  IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830
            +  K+ L+  +             +   +    + K +   ++ ++ K+Q   + +L   
Sbjct: 881  LETKKALEAIISYFESPTNEGKTCLVTRLPISANPKAVSESLNYVKSKLQDKTVYVLAAD 940

Query: 831  SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKV------------LGGGGGGGRPHMAQS 877
             ++ + +    V++ LLD   +A DLA + + V            +G             
Sbjct: 941  LEQGRVAHGCYVSKALLDQGASANDLAAVVSSVVGGKAGGKGSTSIGN------------ 988

Query: 878  GGPNGNKADQAIAGVASFLKK 898
             G + +K + AIA  + +L K
Sbjct: 989  -GVHPDKTEDAIALASDYLAK 1008


>gi|171743066|ref|ZP_02918873.1| hypothetical protein BIFDEN_02192 [Bifidobacterium dentium ATCC
           27678]
 gi|283455924|ref|YP_003360488.1| alanyl-tRNA synthetase [Bifidobacterium dentium Bd1]
 gi|171278680|gb|EDT46341.1| hypothetical protein BIFDEN_02192 [Bifidobacterium dentium ATCC
           27678]
 gi|283102558|gb|ADB09664.1| Alanyl-tRNA synthetase [Bifidobacterium dentium Bd1]
          Length = 892

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/922 (34%), Positives = 484/922 (52%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++FQK+ H ++PS+SLI  N PT +FT +GMVPF     G++ P    +
Sbjct: 1   MRTSEIAKRYLDYFQKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKNRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +        L   +IDTG GL
Sbjct: 175 VDRGPQY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+++++G  Y  +  ++   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG T+P++  L P     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRALGVTDPVLPTLFPVSKEAMVPSYPELESTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E+   E++ F +TL+ G  + D  ++   +    +++GD AFKL+DT+G P+++  ++  
Sbjct: 354 ESAYGEEDAFRRTLESGTEIFDLAVAKAKESGKTVVSGDDAFKLHDTYGFPIELTLEMAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D + F + + EQ+ RARA +L         ++   K+       F+GY  +  
Sbjct: 414 EQGVK-VDEVKFRELMAEQKGRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+  V        +EV+ D+TPFYAEA
Sbjct: 471 ---------------------SARARVIGIMQEGKGSVPAVTGPANIEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D    L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E  VND I
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPARSVMDAVEARVNDRI 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T+ M  +DAIA GA  L G KY D VRVVS+        S  LCGGTH+   G
Sbjct: 630 RDNLSVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIGE---DGWSRELCGGTHIDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGAVNIMSEASIGSGVRRVDALVGQSAYEFNAREHALVSQLSDQLNARPDELAERVNTL 746

Query: 764 WEEYRKLQLIHAKR---KLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A     +L  +V  L     A    V   S  +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPALVADAKASQAPVKVASKNVGHFGSFDALRKTVLDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G++++ K  V +   +        A DL R ++K+LGGGG GG+P
Sbjct: 807 RGQLGEDMPVVVALAGVNEDGKPMVAVATNDAARKQGIKAGDLVRGASKILGGGG-GGKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG +  K D A+  +  
Sbjct: 866 DFAQGGGSDATKIDAALEALVD 887


>gi|301102849|ref|XP_002900511.1| alanyl-tRNA synthetase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|262101774|gb|EEY59826.1| alanyl-tRNA synthetase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 980

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/973 (29%), Positives = 461/973 (47%), Gaps = 99/973 (10%)

Query: 4   VSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
            + IR TF E+FQ      H    S  ++P +DPTL+F N+GM  +K IF GQ  P +  
Sbjct: 28  AARIRKTFFEYFQNQKELPHTFYKSCPVVPLDDPTLLFINAGMNQYKPIFLGQVDPSHPM 87

Query: 60  ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                    QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ A+ L++ LLT
Sbjct: 88  AKLVRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGNYFKKEAVHLSFTLLT 147

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + F +D+ RLY T +          DEE  ++W     L  ++++     DNFW M + G
Sbjct: 148 EVFGIDKDRLYATYFGGDEKQGLPSDEETREIWLNY--LPTERVLPFGCKDNFWEMGDVG 205

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPC+EI +D+           + +    IEIWN VF+QF ++   +   LP   +DTG
Sbjct: 206 PCGPCTEIHYDRIGNRDASE-LVNADRPDVIEIWNNVFIQFNREQDGKLVPLPHKHVDTG 264

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDH 278
           MG ER+A++LQ K +NYD D+F  L  A ++ T           +      + +RV+ DH
Sbjct: 265 MGFERLASILQGKDSNYDTDVFTPLFAAIQKSTKAAPYTGKLGEEDPDKKDMAYRVVADH 324

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337
           +R+ +F I DG +P+N+GRGYVLRRI+RRA+ Y +  L      +  L+P +   +G A+
Sbjct: 325 VRTLTFAITDGAVPSNDGRGYVLRRILRRAVRYGQQFLNAPSGFLTELVPVVVNMLGEAF 384

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHG 395
           PEL+Q +  +EE +  E++ FG+TL++G+     +   + +    ++ G+ AF LYD+ G
Sbjct: 385 PELVQKQKEVEEIILDEEKSFGRTLNKGIERFKKIAQGIREANKLVVPGEDAFFLYDSMG 444

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ + +    G+  +DI  + + +  Q  R++      GS     +    +E     
Sbjct: 445 FPIDLTEIMAEEEGMT-VDIKGYEECMRLQSERSKMDRKKGGSNGARPLVLEARE----- 498

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE----IVEEAVSGQ-- 509
                     S    +           +     S+ V AI    E     V+E  +G   
Sbjct: 499 ---------TSTLAGKHISATDDMAKYEWNVKTSAKVVAIFTTTESSSDFVDEVKAGDFE 549

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +V V+ D+T FY++AGGQ+ DTG      ++L +  V+  A  +      +  G ++   
Sbjct: 550 RVGVILDKTSFYSQAGGQIYDTGVLTASNLKLDVDSVESYAGYVMHM-GSIATGSIKVGD 608

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           S+   +DY  R +++ NH+ TH L+ AL  +LG+ V Q GS +    LRFD T++K +  
Sbjct: 609 SVACEVDYARRAKIAPNHTMTHALNFALRKVLGTVVDQRGSLVDESRLRFDFTNNKALKP 668

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE---- 684
           A+L  +E   +D+I Q L V T+   + +A    G  A+ G  Y D VRVVS+       
Sbjct: 669 AQLAEVEAICDDLIKQQLEVYTQNSAQAEAKRIQGLRAVFGETYPDFVRVVSIGQPIAPM 728

Query: 685 -------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
                       S   CGGTH+ +T E     +  E +I  GIRR+ A T   A      
Sbjct: 729 LEDPEKSKWSNFSVEFCGGTHLKNTKEAKRFVLYEEGAIAKGIRRVSAYTCDLAVEAEER 788

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEE-------------IWEEYRKLQLIHAKRKL----- 779
             +    L +  K+     V  V               + ++ RK       R       
Sbjct: 789 GAKLQVELDAIDKLDGNEFVESVSAFKPVLDQALISLPLKDKLRKQVDSLVNRVKKIKKE 848

Query: 780 -----------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                          E     +      +  +    DSK  + +++A+   I +G  M+ 
Sbjct: 849 AAAARAANGVRDATAEATKAKEAGQEIVVVKLDVGTDSKLGREMLEAMSTIIPTGSFMIF 908

Query: 829 GISKE-KKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHM-AQSGGPNGNK 884
               +  K +    V++  +   + +A       A V+  G GGG+  + A     + +K
Sbjct: 909 STDSDANKTAAFTQVSQHHIDSKQLDARKWVNH-AMVVMKGKGGGKDALNATGQAKSVDK 967

Query: 885 ADQAIAGVASFLK 897
            D+A+A   SF++
Sbjct: 968 VDEAVALAKSFVQ 980


>gi|115490933|ref|XP_001210094.1| alanyl-tRNA synthetase [Aspergillus terreus NIH2624]
 gi|114196954|gb|EAU38654.1| alanyl-tRNA synthetase [Aspergillus terreus NIH2624]
          Length = 968

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/976 (30%), Positives = 465/976 (47%), Gaps = 102/976 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHE---------LLPS---SSLIPCNDPTLMFTNSGMVPFKNIF 50
               +R TFL++F+KNGH          +LPS   S ++P  DPTL+FTN+GM  FK+IF
Sbjct: 12  TAKRVRDTFLDYFKKNGHTFGIATVARSILPSFASSPVVPLADPTLLFTNAGMNQFKSIF 71

Query: 51  TGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110
            G   P     T    C+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ +
Sbjct: 72  LGTVDPNSDFATLKSACIRAGGKHNDLDDVGKDGYHHTFFEMLGNWSFGDYFKKEAIRYS 131

Query: 111 WDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWS 162
           W+LLT  + LD +RLY+T ++         D EA +LW K  G+  D I+     DNFW 
Sbjct: 132 WELLTTVYGLDPQRLYVTYFEGHKEGGLEPDLEAKELW-KAVGVPDDHILPGNMKDNFWE 190

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           M + GPCGPCSE+ +D+           + +    +EIWN VF+Q+ ++  +    LP  
Sbjct: 191 MGDQGPCGPCSEVHYDRI-GGRNAAHLVNMDDPNVLEIWNNVFIQYNREADRSLRPLPNK 249

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHR 273
            IDTG+G ER+ ++LQ+K++NYD D+F  L  A   +          G          +R
Sbjct: 250 HIDTGLGFERLVSILQDKSSNYDTDVFTPLFDAIRDITGAREYQGRFGADDVDGIDTAYR 309

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCT 331
           V+ DH+R+  F I+DG++P N+GRGYV+RR++RR   YAR     E       L+P +  
Sbjct: 310 VVADHIRTLMFAISDGVMPNNDGRGYVIRRVLRRGARYARKYFQVEIGSFFSKLVPTVVD 369

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFK 389
           ++G  +PEL + +  + E L  E+  F KTLDRG    +     S    D+ L+G   ++
Sbjct: 370 QLGDMFPELKKKQHDVMEILDEEEISFSKTLDRGERQFEQYAQKSKTKGDDKLHGADVWR 429

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           LYDT G P+D+ + +   RGL   D+          R RA+  S G      + +   + 
Sbjct: 430 LYDTFGFPVDLTRLMAEERGLRIDDLEFEEA-----RLRAKEASKGQKKAAADAVKLDVH 484

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAV 506
           +                K  K +               +++ VKAI           E  
Sbjct: 485 DLG--------------KLEKMEDVHKTDDSAKFGRENITAQVKAIYHGKSFCTSTSEIT 530

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +G+++ ++ D+T FYAE GGQ  DTG  + DG         +   G  +H   ++ G   
Sbjct: 531 AGEQLGIILDRTNFYAEQGGQENDTGRIVIDGQAELEVGDVQLYGGYVLHTGFMKYGSFS 590

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              S++   D   R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H  P
Sbjct: 591 VGDSVICEYDELRRWPIRNNHTGTHILNFALREVLGDGIEQKGSLVAAEKLRFDFSHKSP 650

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE--- 682
           +T AEL+ +ED   + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV    
Sbjct: 651 LTDAELQKVEDISTEYIRQNCAVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVEL 710

Query: 683 --------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                          S   CGGTHV  TG+I  L ++ ES I  GIRRI A+TG+ A   
Sbjct: 711 EEILKNVSDPRWEKVSIEFCGGTHVQKTGDIKDLVVLEESGIAKGIRRIIAVTGEEAHEV 770

Query: 735 LM-------------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRK 769
                                 ++++ K +   L       V +     R   I ++   
Sbjct: 771 QRLAADFEKRLASLETMPLGSEKEQEAKQIQVELNSLIVSAVQKSKFRERFARINKQIVD 830

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGI 824
            Q    K + +  ++ ++ +     N      ++ +    +SK +   ++ ++ K+Q   
Sbjct: 831 AQKAQQKLESKKALDTINSYFADASNEGKSWLVAKLPISANSKAISEAINHVKSKMQDKS 890

Query: 825 I-MLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           + +L   +   + +    V++   +   +A + A + +  +GG  GG  P      G N 
Sbjct: 891 VYVLAADAAAGRVAHGCYVSKAATEQGASASEWATVVSGAIGGKAGGKGPTS-IGNGVNP 949

Query: 883 NKADQAIAGVASFLKK 898
           +K D+A+     +L K
Sbjct: 950 DKVDEAVELATDYLSK 965


>gi|45188236|ref|NP_984459.1| ADR363Cp [Ashbya gossypii ATCC 10895]
 gi|44983080|gb|AAS52283.1| ADR363Cp [Ashbya gossypii ATCC 10895]
          Length = 956

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/965 (30%), Positives = 467/965 (48%), Gaps = 91/965 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
              ++R+TF+++F+   H+L+PSS +IP +DPTL+F N+GM  FK IF G   P      
Sbjct: 10  TAQNVRSTFIDYFKAKDHKLVPSSPVIPYDDPTLLFANAGMNQFKPIFLGMVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG  + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK 
Sbjct: 70  LKRAVNTQKCIRAGGKHNDLEDVGLDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTKV 129

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T ++         DEEA  LW    G++ D +I     DNFW M + GPC
Sbjct: 130 YGLPEDRLYVTYFEGDESLGLAADEEARDLWLS-VGVAPDHVIAANVKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           +++    IEIWN VF+QF +++      LP   +DTGMG
Sbjct: 189 GPCSEVHFDRI-GGRNAAALVNQDDPNVIEIWNNVFIQFNREHDGSLRPLPAKHVDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F+ L    +++TG++                 +RV+ DH+R
Sbjct: 248 FERLVSVLQDVPSNYDTDVFQPLFARIQEITGVRPYSGKFGADDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +  +ADG +P N+GRGYVLRRI+RR   Y R             L P L  +    YP
Sbjct: 308 TLTIALADGGVPDNDGRGYVLRRILRRGARYVRKYMNYPTGKFFSQLAPTLIEQFKDVYP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           EL + +  + + L  E+  F KTLDRG  L +     +     +IL+G   ++LYDT+G 
Sbjct: 368 ELTKNQSYLFDILDEEEASFAKTLDRGEKLFEKYAETAKNSGSKILDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +    GL  +D   F QA +E    ++ +     +   +     +        
Sbjct: 428 PVDLTQLMADEHGLK-VDNEGFEQAKQESYEASKKNGSKGDANLIKLNVHEV-------- 478

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                       + ++            T  + + +  I      VE+    G++  ++ 
Sbjct: 479 ----------SQLSDEGVPRTDDSAKYGTQDIEATILRIHDGENFVEQMTEVGKQYGILL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  D G  + D       D  ++  G   H   +  G L     ++ + 
Sbjct: 529 DRTCFYAEQGGQEYDKGKLVIDDAAEFNVDNVQQYSGYVFHTGNLADGKLCVGDKIIASY 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ THLL+HAL TILG ++ Q GS +TP+ LRFD +H KP++  EL+ +
Sbjct: 589 DELRRYPIRNNHTGTHLLNHALRTILGDNIDQRGSLVTPEKLRFDFSHKKPMSYEELEQV 648

Query: 636 EDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E   N  I +N  V  + I            A+ G  Y D VRVVSV             
Sbjct: 649 ETICNQQIRENRSVYYKDIPLDVAKSIHSIRAVFGETYPDPVRVVSVGKSVDEILESPSN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736
           E+   +S  LCGGTHVS TG+I    I+ ES I  GIRRI A++   A            
Sbjct: 709 EEWAKYSIELCGGTHVSKTGDIKEFVIIEESGIAKGIRRIVAVSASEAYEVQRVAREFAL 768

Query: 737 ------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                        +++K++ +   L       +++  +  +  ++ +  +      AK++
Sbjct: 769 ELDAIDKLPFSMIKEKKIREIGVRLDQLNISVITKNELKTKFTKMEKAVKDEVKTKAKKE 828

Query: 779 LQLNVEDLSCHKIA--DVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLV-GISKEK 834
           ++  ++ +  +  A  D  F    +    + K +   +  L+   +   I L  G   E 
Sbjct: 829 MKQTLDAVKEYFAANEDATFFVKSLDISANPKAVTEAVQYLKNSARDKTIYLFTGNDPEG 888

Query: 835 KASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +    +++D L    +   LA++ +  +GG   GG+ ++ Q  G      D AIA V 
Sbjct: 889 KVAHGCFISDDALAKGIDGPALAKVVSSKIGGKA-GGKGNVFQGMGDKPAGIDSAIAEVE 947

Query: 894 SFLKK 898
           +  K+
Sbjct: 948 ASFKE 952


>gi|320588479|gb|EFX00948.1| alanyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 1117

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/965 (31%), Positives = 459/965 (47%), Gaps = 93/965 (9%)

Query: 6    SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE---KP--VYQA 60
             +R TFLE+F+K GH ++PSSS++P NDPTL+FTN+GM  FK IF G      P    + 
Sbjct: 167  KVRQTFLEYFEKKGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVAKADPLSSLKR 226

Query: 61   VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
                QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+++WDLLT  + L
Sbjct: 227  AVDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMSWDLLTNVYGL 286

Query: 121  DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            D  RLY+T ++         D EA  LW    G+  D I+     DNFW M + GPCGPC
Sbjct: 287  DPARLYVTYFEGNPAMGLEPDLEAKNLWLS-VGVPEDHILPGNMKDNFWEMGDQGPCGPC 345

Query: 173  SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            SE+ +D+           +++    +E+WN VF+QF++Q  +    LP   +DTGMG ER
Sbjct: 346  SEVHYDKVGGGRNASSLVNQDDPLVVEVWNNVFIQFDRQQDKSLKSLPAKHVDTGMGFER 405

Query: 233  MATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSS 283
            + + LQ+K +NY  D+F  L    ++V          G          +RV+ DH+R  +
Sbjct: 406  LVSALQDKISNYATDIFTPLFDRIQEVTGARPYTDKYGKDDVDGIDTAYRVVADHIRLLT 465

Query: 284  FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341
            F +ADG +P N+GRGYV+RR++RR + YAR     E       +LPAL  +MG  +PE+ 
Sbjct: 466  FSMADGAVPNNDGRGYVVRRVLRRGVRYARKYFGAEIGSFFSQILPALVDQMGHQFPEIA 525

Query: 342  QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLD 399
            + +  I+E L  E+E F +TLDRG    +   +   K   + L+G   ++LYDT G P D
Sbjct: 526  KKQKDIKEILDEEEEAFSRTLDRGERQFEKYAAATAKSGAKTLSGADVWRLYDTFGFPED 585

Query: 400  IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
            + Q +   RGL+              R RAR  S  +                    F  
Sbjct: 586  LTQLMAEERGLSIDAEEV-----AVARERAREASKSVKEAVQ--------------TFAK 626

Query: 460  YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516
             ++ + ++   E + V        L   + S V+ I      V+      +   + ++ D
Sbjct: 627  LNVHQIAELENEHKIVRPSSEAKYLRGDLHSRVELIYTGTGFVKTTKDIPANTPLGILVD 686

Query: 517  QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            +T FYAE+GGQ+ DTG  + D +        ++  G  VH+  +E G L +  +++   +
Sbjct: 687  KTNFYAESGGQVADTGRIVIDDVAEFKVLDVQEYGGYVVHNGYLEYGELSSGDNVICEYE 746

Query: 577  YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
               R  +  NH+ TH+L+HAL  +LG  V+Q GS +  D LRFD +H   ++ AE+K IE
Sbjct: 747  ELRRAPIRNNHTGTHVLNHALREVLGDDVNQKGSLVDQDKLRFDFSHKSAVSLAEIKKIE 806

Query: 637  DNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVR-----------VVSVEYE 684
            +  N  I +NL V  + +         G  A+ G  Y D VR           + + +  
Sbjct: 807  ELANANIQRNLKVFYKDVDLASAREIEGVRAVFGETYPDPVRVVSVGVDVDELLRTPKKA 866

Query: 685  DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            +   +S   CGGTHV  TG I  + +V ES I  GIRRI A TG  A        +  + 
Sbjct: 867  EWRGYSVEFCGGTHVEQTGLIKDVVVVEESGIAKGIRRIVAYTGDAAHRVQREATQFQER 926

Query: 745  LASFLKVS-------------------------QGNVVGRVEEIW----EEYRKLQLIHA 775
            + +  K+                          +  +  R  ++     +E +K Q    
Sbjct: 927  IEAIEKLPFGPEKETEIKAAQHDLNQLAISALAKEELRTRFAKVQKDVLDELKKRQKAEL 986

Query: 776  KRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833
            K  +    +  +     +   F+ H+    ++K +  VM+  + K +   + +  G   E
Sbjct: 987  KAAVGAVTDHFAKPDNKESKVFVGHLPISANAKAISEVMNHFKTKDKERSVYVFGGSPSE 1046

Query: 834  KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
                 + V T        A   +   + V+GG  GG  P   Q  G    K +  +    
Sbjct: 1047 GVVHGVYVGTHLASKGVTAEQWSTAVSDVVGGKAGGKEPTR-QGSGTKPEKLEDGVKRAE 1105

Query: 894  SFLKK 898
             +L +
Sbjct: 1106 EWLAE 1110


>gi|119025718|ref|YP_909563.1| alanyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|154487461|ref|ZP_02028868.1| hypothetical protein BIFADO_01314 [Bifidobacterium adolescentis
           L2-32]
 gi|205829991|sp|A1A198|SYA_BIFAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118765302|dbj|BAF39481.1| alanyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|154083979|gb|EDN83024.1| hypothetical protein BIFADO_01314 [Bifidobacterium adolescentis
           L2-32]
          Length = 892

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/920 (34%), Positives = 486/920 (52%), Gaps = 64/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   FL++F+++ H ++PS+SLI  N PT +FT +GMVPF     G++ P    +
Sbjct: 1   MRTSEIAKRFLDYFEQHDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKHRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +        L   +IDTG GL
Sbjct: 175 VDRGPKY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+++++G  Y  +    V  R++ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG TEP+M  LLP     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTEPVMPTLLPTSKAAMEPSYPELNDTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G  + D  ++   +   ++++G+ AFKL+DT+G P++I  ++  
Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDMAVTKAKQGGSDLVSGEDAFKLHDTYGFPIEITLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-YGATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLLQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+  V        +EV+ D+TPFYA+A
Sbjct: 471 ---------------------SARAKVLGIMQEGKGSVPAVTGPANIEVILDRTPFYAQA 509

Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D    L++ DVQK  + + VH   +  G L     +   ID + R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLERRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VN+ +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNAVEARVNEKL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +NL V T+ M  +DAIA GA  L G KY D VRVVS+        S  LCGGTH+   G
Sbjct: 630 RENLAVTTQEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHIDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  +      +  RV  +
Sbjct: 687 KIGAINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDMVNARPDELAERVNML 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + +L  +V  L     A    V      +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYESQLAASVPTLVAEAKASSAPVKVAKKNVGHFGSFDALRKTVLDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G++++ K  V +   E        A DL R ++KVLGGGG GG+P
Sbjct: 807 RGQLGEDAPVVVALAGMNEDGKPMVAVATNEAARKQGIKAGDLVRGASKVLGGGG-GGKP 865

Query: 873 HMAQSGGPNGNKADQAIAGV 892
             AQ GG +  K D+A+  +
Sbjct: 866 DFAQGGGADATKIDEALEAL 885


>gi|183601533|ref|ZP_02962903.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241190968|ref|YP_002968362.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196374|ref|YP_002969929.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183219139|gb|EDT89780.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249360|gb|ACS46300.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250928|gb|ACS47867.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289178710|gb|ADC85956.1| Alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793957|gb|ADG33492.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis V9]
          Length = 899

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/929 (34%), Positives = 476/929 (51%), Gaps = 71/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L +F+K  H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTAEIAQRYLNYFKKQDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D++ VG+T RH TFF+MLGNFSFG YFKE AI  A+DLLT      
Sbjct: 60  ASNQKCVRTL----DIEEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYDLLTSPREDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D  +L++T Y +D+EA  +W+   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GFGFDPEKLWMTTYTDDDEARAMWRNE-GVDPEHIQILGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +   N + +        L   +IDTG GL
Sbjct: 175 VDRGPEY-GKEGGPIADESRYIEIWDLVFENYMVDNVKSKTDLHIAGELKHKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+E++TG+KY  N    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKNNIYETDEVYPVIEAAEKITGIKYGENKEADVRMRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P+M  LLP     M   YPEL      + 
Sbjct: 294 GVRPSNAGRGYVLRRLIRRTIEAMRVLGVTDPVMPQLLPVSEQAMEPNYPELANTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL---------GKDEILNGDVAFKLYDTHGLPLD 399
           E    E++ F +TL  GL + D  ++               +++GD AF L+DT+G P++
Sbjct: 354 EAAYGEEDAFRRTLTNGLEIFDMAVAKAKSTAEEAKGETTPVVSGDAAFTLHDTYGFPIE 413

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFI 458
           +  ++   +G+  +D   F + + EQ+SRAR  +L          +   K K     +F+
Sbjct: 414 LTLEMAQEQGVK-VDEAKFRELMNEQKSRARQDALKKRHNVDLSEYDDFKNKLHQPIEFL 472

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQ 517
           GY  +                          S V  I+ +G   V    +   VEV+ D+
Sbjct: 473 GYTEVSTR-----------------------SRVLGIMLEGVGSVPAVSAPATVEVILDR 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           TPFYAEAGGQL D G  I D    L++ DVQK  + + V    +  G L        TID
Sbjct: 510 TPFYAEAGGQLADQGEIISDDGAVLEVDDVQKPIKDLIVQQCRLIEGTLVVGAEATATID 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R  ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   T   + ++E
Sbjct: 570 VERRGAIARSHTATHIVHKALREELGPQATQRGSEDAPNRLRFDFQWSTAPTKELMSAVE 629

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VND +  NL V T  M  +DAIA GA  L G KY D VRVV++        S  LCGG
Sbjct: 630 ARVNDRLRDNLHVSTEEMKFDDAIALGAMHLFGEKYGDVVRVVTIG---DDGWSRELCGG 686

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV   G+I  + I+SE+S+ +G+RR++A+ GQ A      +   +  L+  L      +
Sbjct: 687 THVDFAGKIGQVNILSEASVGSGVRRVDALVGQSAYDFNAREHALVSQLSDTLNARPDEL 746

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVE------DLSCHKIADVNFMSHIISEVDS-KEL 809
             R+  +  + +      A               + + +  A V  +S  +    S   L
Sbjct: 747 ADRINTLLAKLKDSDRRLASMYEAQLASSVPELVEAAANSTAPVVVVSKNVGHFGSFDVL 806

Query: 810 KSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGG 865
           +  +  ++ ++      I+ L G++++ K  + +   E        A DL R ++K+LGG
Sbjct: 807 RKTVMDIRGRLGDDKPVIVALAGVNEDDKPVIAVATNEAARKAGVKAGDLVRGASKMLGG 866

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           GG GG+P  AQ GG + +K D A+  +  
Sbjct: 867 GG-GGKPDFAQGGGADASKIDAALEALTQ 894


>gi|134083795|emb|CAK47129.1| unnamed protein product [Aspergillus niger]
          Length = 961

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/912 (31%), Positives = 439/912 (48%), Gaps = 93/912 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
               +R TFL++F++NGH  + SS ++P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 12  TSKRVRDTFLQYFKENGHTFVASSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFAN 71

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK 
Sbjct: 72  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKDAIRYSWELLTKI 131

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD RRLY+T ++         D EA  LW K  G+  D I+     DNFW M + GPC
Sbjct: 132 YGLDPRRLYVTYFEGNKEGGLEPDLEAKDLW-KAVGVPEDHILPGNMKDNFWEMGDQGPC 190

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG
Sbjct: 191 GPCSEIHYDRI-GGRNAAHLVNQDDPNVLEIWNNVFIQYNRETDRSLRPLPNKHVDTGMG 249

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
            ER+ +VLQ K++NYD D+F  + Q    V          G          +RVI DH+R
Sbjct: 250 FERLVSVLQNKSSNYDTDVFTPIFQTIRDVTGAREYRGCFGSDDADGIDTAYRVIADHVR 309

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           +  F I+DG +P N+GRGYV+RR++RR   YAR     E       ++P +  ++G  +P
Sbjct: 310 TLMFAISDGAVPNNDGRGYVIRRVLRRGARYARKYFGVEIGNFFSKIVPTVVDQLGDMFP 369

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           EL + +  + E L  E+  F KTLDRG    +     +     + L+G   ++LYDT G 
Sbjct: 370 ELRRKQPDVMEILDEEEMSFAKTLDRGERQFEHYAQQAKAKGADKLHGADVWRLYDTFGF 429

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL   D           RSRA+  S G    + E +   + +      
Sbjct: 430 PVDLTRIMAEERGLQIDDREFEEA-----RSRAKEASRGQKKTSAETVKLDVHDLG---- 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                     K    +               +++ VKAI          +E   G+++ +
Sbjct: 481 ----------KLEAMNDVPKTDDTAKFGKGNITAQVKAIYHGKTFHSSTDEVPDGEQLGI 530

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T FYAE GGQ  DTG  + DG         +   G  +H   ++ G      +++ 
Sbjct: 531 ILDRTNFYAEQGGQENDTGKIVIDGQSELEVGDVQLYAGYVLHTGFMKYGSFSVGDTVIC 590

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+ AL T+LG  V Q GS +  + LRFD +H   I+  +L 
Sbjct: 591 EYDELRRWPIRNNHTGTHILNFALRTVLGDGVEQKGSLVAAEKLRFDFSHKSAISDKDLA 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
            IE+   + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV           
Sbjct: 651 RIEEISTEYIRQNCTVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVELGEILQNV 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736
                   S   CGGTHV  TG+I  L ++ E  I  GIRRI A+TG+ A          
Sbjct: 711 KDPRWKEVSIEFCGGTHVQKTGDIKDLIVLEEGGIAKGIRRIIAVTGEDAHEVQRLAAEF 770

Query: 737 --------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEE----YRKLQL 772
                          ++++ K + + L       V +     R   I +E     + LQ 
Sbjct: 771 QKRLDLLEAMPLTPEKEKEAKQIQAELNQLSISAVQKSAFRERFARINKEVIDGQKALQK 830

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGI 830
           + +K  L+         +  D +++   +    +SK +   ++ ++ K+    + +L   
Sbjct: 831 LESKVALETITNYFQAPENQDRSWLVAKLPISANSKAISESLNYVKSKLPDKSVYVLAAS 890

Query: 831 SKEKKASVLIVV 842
           + + + +    V
Sbjct: 891 TDQGRVAHGCYV 902


>gi|310789965|gb|EFQ25498.1| tRNA synthetase class II [Glomerella graminicola M1.001]
          Length = 955

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/963 (31%), Positives = 471/963 (48%), Gaps = 93/963 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQ--AV 61
           +R TFLEFF+K GH ++PSSS++P NDPTL+FTN+GM  FK IF G      P+Y     
Sbjct: 11  VRKTFLEFFEKRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTISKADPMYPLKRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + LD
Sbjct: 71  TDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEWSWELLTKVYGLD 130

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA  LW+   G+  D I+     DNFW M + GPCGPCS
Sbjct: 131 PDRLYVTYFEGNPDMGLEPDLEAKGLWQS-VGVPEDHILPGNMKDNFWEMGDQGPCGPCS 189

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E+ +D+           +++    +EIWN VF+Q+++Q  +    LP   +DTGMG ER+
Sbjct: 190 EVHYDKI-GGRNASDLVNQDDPMVVEIWNNVFIQYDRQPDRSLKSLPAKHVDTGMGFERL 248

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            + LQ   +NY  D+F  L +  E+VTG +   +             +RVI DH+R  +F
Sbjct: 249 VSALQNTVSNYATDIFTPLFKRIEEVTGARPYTDKYGADDVDGIDTAYRVIADHIRLLTF 308

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            ++DG +P N+GRGYV+RR++RR + YAR     E       +LPAL  +MG  +PE+++
Sbjct: 309 SMSDGAVPNNDGRGYVVRRVLRRGVRYARKYFNAEIGSFFSKILPALVDQMGEQFPEIVK 368

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDI 400
            +  I E L  E+E F +TLDRG    +   +      ++ L+G   ++LYDT G P+D+
Sbjct: 369 KQDDIREILDEEEEAFARTLDRGEAQFEKYANAAIKKGEKKLSGAEVWRLYDTFGFPVDL 428

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L   D      A ++ R  ++                    K     F   
Sbjct: 429 TKLMAEERKLEIDD-DEVKAAQDKAREASKVV------------------KNSVQTFAKL 469

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
           ++ + ++  ++            +     + V+ I      V+          + ++ D+
Sbjct: 470 NVHQIAELEQQLNVARTDDDAKFVKGDSKAKVQLIYDGKGFVKSTKDIAENTPLGLLLDK 529

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE+GGQ+ DTG  + D +        +   G  VH+  +E G+L +   ++   D 
Sbjct: 530 TNFYAESGGQVADTGRIVIDDVAEFKVLDVQNHGGYIVHNGYLEYGVLSSGNEVICEYDE 589

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ATH+L+H+L  +LG  V+Q GS +  + LRFD +H   +T  ELK IED
Sbjct: 590 LRRSPIRNNHTATHILNHSLREVLGDDVNQKGSLVDNEKLRFDFSHKTGVTIPELKKIED 649

Query: 638 NVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVR-----------VVSVEYED 685
             N  I QN  +  + ++        G  A+ G  Y + VR           + + +  +
Sbjct: 650 FSNSYIRQNGKIYAKEVDLDLAKGIEGVRAVFGETYPNPVRVVSVGVDVDTLLANPKNPE 709

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-------------R 732
               S   CGGTHV  TG I  L IV ES I  GIRRI A TG  A              
Sbjct: 710 WRKISVEFCGGTHVDQTGLIKDLVIVEESGIAKGIRRIIAYTGDAAHQVQREADEFSKRL 769

Query: 733 SHLM------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
             L        +++++K+    L       +++ ++  R ++I +     Q    K + +
Sbjct: 770 DALEVLPFGPEKEQEIKTTQHALNQLTISTLTKEDIKKRFDKIIKAVTDEQKKRQKAEAK 829

Query: 781 LNVEDLSCH--KIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-GISKEKKA 836
             ++ +  H  K  D   F+  +    ++K +  V+   Q K +   + L  G   E   
Sbjct: 830 TALDTVVAHFDKNKDSKWFVGQLPISANAKAIGEVVKHFQSKDKERSVYLFGGSKNEGSV 889

Query: 837 SVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           +  + V   L      A   A   ++++GG  GG  P   Q  G      D+A+A    +
Sbjct: 890 AHGVYVGTHLSSQGVTAEQWAAQVSEIVGGKSGGKEPTR-QGQGTKAENLDEAVATAEKW 948

Query: 896 LKK 898
           LK+
Sbjct: 949 LKE 951


>gi|312215385|emb|CBX95337.1| similar to alanyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 968

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/991 (30%), Positives = 459/991 (46%), Gaps = 139/991 (14%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F++ GH  +PSSS++P +DPTL+FTN+GM  +K IF G   P       +  
Sbjct: 15  VRQTFLDYFKERGHSFVPSSSVVPLSDPTLLFTNAGMNQYKAIFQGTIDPSSDFAQLKRA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI   W+LLTK + +D
Sbjct: 75  TNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTKVYGID 134

Query: 122 QRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            +RLY+T ++       D +A +LWK   G+  D I+     DNFW M + GPCGPCSE+
Sbjct: 135 TKRLYVTYFEGNEDLEPDLKAKELWKS-VGVPEDHILPGDMKDNFWEMGDQGPCGPCSEV 193

Query: 176 FFDQGECIPGGLPG----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
            +D  E   G         + +    IEIWN VFMQ+ ++  +    LP   IDTG+G E
Sbjct: 194 HYDLREPEGGNYRNAASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTGLGYE 253

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSS 282
           R+ +VLQ   +NYD D+F  L +  ++V          G          +RV+ DH R  
Sbjct: 254 RLVSVLQHTKSNYDTDVFTPLFKRIQEVTGAREYRGGFGADDPDGIDTAYRVVADHTRMM 313

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPEL 340
           SF IADG +P N GRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+
Sbjct: 314 SFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFEVEIGDFFSKIIPTLVDQMGDMFPEI 373

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398
            + +  I E L  E++ F K+LDRG V+ +     +       L GD  ++LYDT+G P+
Sbjct: 374 RKKQQDIIEILDEEEKAFAKSLDRGEVIFEKYAQKAKAKGSNDLPGDDVWRLYDTYGFPV 433

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ + +   RGL   D           + +AR  S G        + F + +        
Sbjct: 434 DLTKLMAEERGLNINDKEVEKA-----QEKAREASKGDKKAGAAVVKFDVHDLG------ 482

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEVVF 515
                        D        P      +++ +KAI       +  +E   G++  V+ 
Sbjct: 483 --------ALDAMDDVPKTDDSPKYGRENITATIKAIYHNKQFLKSTKEVPEGEQFGVLL 534

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + DG      +  +   G  +H   ++ G L+    ++   
Sbjct: 535 DKTNFYAEQGGQEYDTGRLLVDGEAEISIENVQVYAGYVLHTGYLKYGELKVGSEVIAEF 594

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L++AL  +LG+ V Q GS + P+ LRFD +H   ++ AE++ +
Sbjct: 595 DELRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFSHKAGLSDAEIEKV 654

Query: 636 EDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E      I  +  V  + +   +    +G  A+ G  Y D VRVVSV             
Sbjct: 655 ESISTTYIKADAKVYAKDVPLSKAKEITGVRAVFGETYPDPVRVVSVGQPVEDLLADPKN 714

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736
              G  S   CGGTHV  TGEI  L I+ ES I  GIRRI A+TGQ A +          
Sbjct: 715 PAWGKLSVEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQEAYNVQRLANDFAT 774

Query: 737 ------------GQDEKLKSLASFL---------KVSQGNVVGRVEE-IWEEYRKLQLIH 774
                        ++ + K L   L         K S  +   ++++ I +E +      
Sbjct: 775 RLESFGKMPFGPAKEAEAKKLQVELNGLTISALSKSSLRDSFNKIQKSILDEQKAAAKAD 834

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDAL---QKKIQSGIIMLV 828
            KR L    +     +  D N + H +    +V+ K +   +  +   +  ++   + L 
Sbjct: 835 NKRVLDQVTKFFE-EEGKDSNVLVHKVAWSPQVN-KAISETIKTVSAPKSGLKDKSVYLF 892

Query: 829 GIS-KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS---------- 877
             S +E K      V+E     F A            G  G   P  A +          
Sbjct: 893 SASPEEGKVVHACYVSEP----FKA-----------AGADG---PKWAAAVTPIIGGKAG 934

Query: 878 ----------GGPNGNKADQAIAGVASFLKK 898
                      G N  + D+ +     +++K
Sbjct: 935 GKAGAATAIGQGTNPERVDEGVEEARKWIEK 965


>gi|330934785|ref|XP_003304705.1| hypothetical protein PTT_17354 [Pyrenophora teres f. teres 0-1]
 gi|311318587|gb|EFQ87206.1| hypothetical protein PTT_17354 [Pyrenophora teres f. teres 0-1]
          Length = 966

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/987 (29%), Positives = 457/987 (46%), Gaps = 127/987 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           + + +R TFL++F++ GH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P      
Sbjct: 11  SAARVRQTFLDYFKERGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFAQ 70

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI   W+LLT  
Sbjct: 71  LKRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTGV 130

Query: 118 FDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           + +D +RLY+T ++       D EA +LWK   G+  D I+     DNFW M + GPCGP
Sbjct: 131 YGIDPQRLYVTYFEGADGLEPDLEAKELWKS-VGVPEDHILPGDMKDNFWEMGDQGPCGP 189

Query: 172 CSEIFFDQGECIPGGLPG----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSE+ +D  E   G         + +    IEIWN VFMQ+ ++  +    LP   IDTG
Sbjct: 190 CSEVHYDLREPEGGKYRNVASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTG 249

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDH 278
           MG ER+ +VLQ K +NYD D+F  L +  + +          G +        +RV+ DH
Sbjct: 250 MGYERLVSVLQHKKSNYDTDVFTPLFKKIQDITGAREYRGKFGAEDPDGIDTAYRVVADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336
           +R  SF IADG +P N GRGYV+RR++RR   YAR    T+       ++P L  +MG  
Sbjct: 310 VRMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFETDIGDFFSKIVPTLVEQMGDM 369

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394
           +PE+ + +  I E L  E++ F K+LDRG V+ +     + +   + L GD  ++LYDT+
Sbjct: 370 FPEIKKKQQDIIEILDEEEKAFAKSLDRGEVIFEKYAQKAKVKGSDALPGDDVWRLYDTY 429

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   RGL   D    +      + +AR  S G        + F + +    
Sbjct: 430 GFPVDLTKLMAEERGLKIDDKEVDDA-----QEKAREASKGDKKAAGALVKFDVHDLG-- 482

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKV 511
                                            ++S++KAI    + +   +E   G++ 
Sbjct: 483 ------------ALENMPDVPKTDDSAKYGRENITSVIKAIYHNKKFLKSTKEVPEGEQF 530

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ D+T FYAE GGQ  DTG  + DG      D  +   G  +H   ++ G L     +
Sbjct: 531 GVLLDRTNFYAEQGGQEYDTGKLLVDGEAEISIDNVQVYAGYVLHTGYLKYGELSVGSEV 590

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +   D   R  +  NH+ TH+L++AL  +LG+ V Q GS + P+ LRFD +H   ++ AE
Sbjct: 591 IAEFDELRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFSHKAGLSDAE 650

Query: 632 LKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYND-----------RVRVV 679
           L  +E   +  I ++  V  + +         G  A+ G  Y D              + 
Sbjct: 651 LDKVESISSKYIKEDAQVYAKDVPLASAKEIRGVRAVFGETYPDPVRVVSVGVPVEELLA 710

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--- 736
            V+ E     S   CGGTHV  TGEI  L I+ ES I  GIRRI A+TGQ A S      
Sbjct: 711 DVKNEKWEKLSIEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQEAYSVQRLAA 770

Query: 737 ----------------GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
                            ++ + K +   L     + + +  ++ +++ K+Q      +  
Sbjct: 771 EFQERVEAMGKMPFGPQKEAEAKKIGVDLNNLTISALAK-AKLRDQFAKIQKSILDEQKA 829

Query: 781 LNVEDLS--CHKIADV------NFMSHIIS---EVDSKELKSVMDAL---QKKIQSGIIM 826
               D      ++          FM   +     V+ K +   +  +   +  ++   + 
Sbjct: 830 AAKADNKRVMDEVNKFFEDDTKKFMVKKLDWSSNVN-KAISEAIKTISGPKSALKDRSLY 888

Query: 827 LVGIS-KEKKASVLIVVTEDLLDRFNAV----DLARLSAKVLG-----------GGGGGG 870
           L   S +E K      V+E      NA       A     ++G                 
Sbjct: 889 LFSASPEEGKVVHGCYVSEPFK---NAGADGPKWASAVTPIIGGKAGGKPGAPT------ 939

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
               A   G N +K D+ +     +++
Sbjct: 940 ----AIGQGTNADKVDEGVEEARKWIE 962


>gi|331232484|ref|XP_003328904.1| alanyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309307894|gb|EFP84485.1| alanyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 969

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/977 (31%), Positives = 460/977 (47%), Gaps = 111/977 (11%)

Query: 1   MSNVSS-----------IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN 48
           MS+ +            +R TF E+FQ ++ H  + SSS++P +DPTL+F N+GM  +K 
Sbjct: 1   MSSTNQTSQFGDWPAHKVRKTFFEYFQNQHAHTFVHSSSVVPFDDPTLLFANAGMNQYKP 60

Query: 49  IFTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK 103
           IF G   P +           QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK
Sbjct: 61  IFLGTIDPSHPFKNLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 120

Query: 104 ERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRIT 155
             AI +AWDLLT+ + L + RLY+T +  D         E+ ++W  + G+  DK++   
Sbjct: 121 SEAIHMAWDLLTRVYALPKDRLYVTYFQGDPAQNLLPDLESKQIWIDL-GVHPDKVLPGN 179

Query: 156 TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
             DNFW M  +GPCGPCSEI +D+           +++    +EIWN VF+Q+ ++    
Sbjct: 180 AKDNFWEMGTSGPCGPCSEIHYDRV-GGRNAAELVNQDDPMVLEIWNNVFIQYNREPSGS 238

Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------- 268
              LP   +DTGMG ER+ +VLQ+KT+NYD D+FK L    +++TG +            
Sbjct: 239 LKPLPARHVDTGMGFERLVSVLQDKTSNYDTDVFKPLFDRIQELTGARPYAGKLGEDDVD 298

Query: 269 --IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YTEPLMMH 324
                +RVI DH+R+ +F I+DG +P N GRGYVLRRI+RR   Y R             
Sbjct: 299 GIDTAYRVIADHVRTLTFAISDGGVPNNVGRGYVLRRILRRGARYVRKKFDVPIGNFFSR 358

Query: 325 LLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--L 382
           L P L  +MG  +PE+      ++E L  E+  F  TLDRG  + +       K+    L
Sbjct: 359 LAPTLIDQMGDVFPEIRSKTEELKEILDEEEASFALTLDRGEKMFEKYAEKAKKEGKKNL 418

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           +G   ++LYDT+G P+D+   +       GID   F  A    +  ++     +     E
Sbjct: 419 DGQDVWRLYDTYGFPVDLTLLMAEEA-RLGIDHDGFEMAQAASKELSKGGKKKVVGTAVE 477

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI- 501
               ++ E                     D+           ++ +++ VKAI   G+  
Sbjct: 478 LDVHAIAE-----------------LESNDKVPKTDDSSKFASSSITATVKAIYYDGKFH 520

Query: 502 --VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH-A 558
              E   S  +  ++ D+T FYAE GGQ  DTG       +        +    +V H  
Sbjct: 521 SSTEAVPSSSRCGIILDKTNFYAEQGGQENDTGSLTNPEKQTTFDVEDVQVYNGYVLHSG 580

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +V  G+L+   S+    D   R  +  NH+ TH+L+ AL   LG H+ Q GS + P  LR
Sbjct: 581 LVSEGVLQVGDSVSAAYDELRRWPIRNNHTGTHVLNWALRETLGDHIDQKGSLVAPSKLR 640

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVR 677
           FD +H + +T  EL  IE   N  I+++ PV  R M  ++A    G  A+ G  Y D VR
Sbjct: 641 FDFSHKQQVTIDELSKIESTCNQWISKSFPVAAREMRLDEAKKIPGLRAVFGEAYPDPVR 700

Query: 678 VVSVE------------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           VV V                   +S   CGGTHV  T EI  L +V ES I  G+RRI A
Sbjct: 701 VVVVGPNPFDLLDADLTDPKWSNYSVEFCGGTHVKLTSEIKQLVLVEESGIAKGVRRIVA 760

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLN 782
           +TG+ ARS      +    L   + +   +    ++    E   L+   ++ +K KL+ +
Sbjct: 761 VTGEEARSVSQQAKDIEAKLDQIIGLPVKDREAALKTFSVELAALEISVILKSKLKLKFS 820

Query: 783 VEDLSCHKIADV-----------------------NFMSHIIS-EVDSKELKSVMDALQK 818
                  ++A +                         M+ ++    +SK L      L+ 
Sbjct: 821 QAQKELVELAKIQAKADEKKALQVVNDWIKEHPNERVMTSVLDLGSNSKALGVACGQLKS 880

Query: 819 KIQSGIIMLVGISK-EKKASVLIVVTE-DLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874
             ++G   L  ++  +KK      + E DL  +  +NA       +KVLGG G GG+P +
Sbjct: 881 SGKAG--YLFSVNALDKKVFHASALPEQDLKAKPSWNAKLWMDQVSKVLGGKG-GGKPEL 937

Query: 875 AQSGGPN--GNKADQAI 889
           AQ  G        DQA+
Sbjct: 938 AQGVGTYSGTENLDQAV 954


>gi|254252618|ref|ZP_04945936.1| Alanyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124895227|gb|EAY69107.1| Alanyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 914

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/674 (44%), Positives = 409/674 (60%), Gaps = 42/674 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   
Sbjct: 21  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYSRA 80

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT  + L 
Sbjct: 81  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWELLTTVYLLP 140

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTND-------NFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G++ ++IIRI  N              +TGPCGPC+E
Sbjct: 141 KDKLWVTVYQEDDEAYDIWAKEVGVATERIIRIGDNKGARYAVGQLLDDGDTGPCGPCTE 200

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 201 IFYDHGPDVWGGPPGSHEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 260

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +     N  + +VI DH+R+ +FLI DG++P 
Sbjct: 261 AAVLQHVHSNYEIDLFQNLIKAAARVTEVAD--LNNNSLKVIADHIRACAFLIVDGVIPG 318

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 319 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGDAYPELKEAEQRVTDVLRQ 378

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 379 EEERFFETIEHGMSILEAALAELDAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERSVT 438

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 439 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 486

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 487 ------------------AKVVALYVDGSSVNEVKTGQHAVVVLDHTPFYAESGGQVGDQ 528

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 529 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKIGDVLRAEIDAQRRARTQRNHSATH 588

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 589 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 648

Query: 652 RIMNREDAIASGAA 665
           R+M  ++A+  GA 
Sbjct: 649 RVMPYDEAVKGGAM 662


>gi|189203303|ref|XP_001937987.1| alanyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187985086|gb|EDU50574.1| alanyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 966

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/987 (29%), Positives = 454/987 (45%), Gaps = 127/987 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           + + +R TFL++F++ GH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P      
Sbjct: 11  SAARVRQTFLDYFKERGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFAQ 70

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI   W+LLT  
Sbjct: 71  LKRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTGV 130

Query: 118 FDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           + +D +RLY+T ++       D EA +LWK   G+  D I+     DNFW M + GPCGP
Sbjct: 131 YGIDPQRLYVTYFEGADGLEPDLEAKELWKS-VGVPEDHILPGDMKDNFWEMGDQGPCGP 189

Query: 172 CSEIFFDQGECIPGGLPG----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSE+ +D  E   G         + +    IEIWN VFMQ+ ++  +    LP   IDTG
Sbjct: 190 CSEVHYDLREPEGGKYRNAASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTG 249

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDH 278
           MG ER+ +VLQ K +NYD D+F  L +  +++          G +        +RV+ DH
Sbjct: 250 MGYERLVSVLQHKKSNYDTDVFTPLFKKIQEITGAREYRGKFGAEDPDGIDTAYRVVADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336
           +R  SF IADG +P N GRGYV+RR++RR   YAR    T+       ++P L  +MG  
Sbjct: 310 VRMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFETDIGDFFSKIVPTLVEQMGDM 369

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394
           +PE+ + +  I E L  E++ F K+LDRG V+ +     + +   + L GD  ++LYDT+
Sbjct: 370 FPEIKKKQQDIVEILDEEEKAFAKSLDRGEVIFEKYAQKAKVKGSDALPGDDVWRLYDTY 429

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   RGL   D           + +AR  S G        + F + +    
Sbjct: 430 GFPVDLTKLMAEERGLKIDDKEVEEA-----QEKAREASKGDKKAAGALVKFDVHDLG-- 482

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKV 511
                                            ++S++KAI    + +   +E   G++ 
Sbjct: 483 ------------ALENMPDVPKTDDSAKYGRENITSVIKAIYHNKKFLKSTKEVPEGEQF 530

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ D+T FYAE GGQ  D G  + DG         +   G  +H   ++ G L     +
Sbjct: 531 GVLLDRTNFYAEQGGQEYDMGKLVVDGEACIDITNVQVYAGYVLHTGYLQDGELSVGSEV 590

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +   D   R  +  NH+ TH+L++AL  +LG+ V Q GS + P+ LRFD +H   ++ AE
Sbjct: 591 IAEFDESRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFSHKAGLSEAE 650

Query: 632 LKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYND-----------RVRVV 679
           L  +E   +  I ++  V  + +         G  A+ G  Y D              + 
Sbjct: 651 LDKVESISSKYIKEDAKVYAKDVPLASAKEIRGVRAVFGETYPDPVRVVSVGVPVEELLA 710

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--- 736
            V+ E     S   CGGTHV  TGEI  L I+ ES I  GIRRI A+TGQ A        
Sbjct: 711 DVKNEKWEKLSIEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQEAYRVQRLAT 770

Query: 737 ----------------GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
                            ++ + K +   L     + + +  ++ +++ K+Q      +  
Sbjct: 771 QFQERVEAMGKMPFGPQKEAEAKKIGVDLNNLTISALAK-AKLRDQFAKIQKSMLDEQKA 829

Query: 781 LNVEDLS--CHKIADV------NFMSHIIS---EVDSKELKSVMDAL---QKKIQSGIIM 826
               D      ++          FM   +     V+ K +   +  +   +  ++   + 
Sbjct: 830 AAKADNKRVMDEVNKFFEDETKKFMVKKLDWSSNVN-KAISEAIKTISGPKSALKDRSLY 888

Query: 827 LVGIS-KEKKASVLIVVTEDLLDRFNAV----DLARLSAKVLG-----------GGGGGG 870
           L   S +E K      V+E      NA       A     ++G                 
Sbjct: 889 LFSASPEEGKVVHGCYVSEPFK---NAGADGPKWASAVTPIIGGKAGGKPGAPT------ 939

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
               A   G N +K D+ +     +++
Sbjct: 940 ----AIGQGTNADKVDEGVEEARKWIE 962


>gi|229817702|ref|ZP_04447984.1| hypothetical protein BIFANG_02974 [Bifidobacterium angulatum DSM
           20098]
 gi|229785491|gb|EEP21605.1| hypothetical protein BIFANG_02974 [Bifidobacterium angulatum DSM
           20098]
          Length = 892

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/923 (33%), Positives = 476/923 (51%), Gaps = 66/923 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++F  + H ++PS+SLI  N PT +FT +GMVPF     G++   +  +
Sbjct: 1   MRTSEIAKRYLDYFAAHDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTAPHPRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  LWK   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSLWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +        L   +IDTG GL
Sbjct: 175 VDRGPEF-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G KY  N    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKNNIYETDEVYPVIEAAERLSGHKYGENEAFDVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG  E +M  L P     M ++YPEL +    + 
Sbjct: 294 GVRPSNTGRGYVLRRLLRRTVKAMRALGVQEAVMPTLFPTSKAAMEASYPELNKTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G  + D  +S   +     ++G  AFKL+DT+G P+++  ++  
Sbjct: 354 EAAYGEEDAFLRTLEAGTEIFDMAVSKAKESGKGTVSGSDAFKLHDTYGFPIELTLEMAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY     
Sbjct: 414 EQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGYTDF-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+  V        +EV+ D+TPFYAEA
Sbjct: 471 ---------------------SARATVLGIMQEGKGSVPAVTGPANIEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D    L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGTQVNANIDLNRRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VN+ +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNEKL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +NL V T+ M  +DAIA GA  L G KY D VRVVS+        S  LCGGTH+   G
Sbjct: 630 RENLAVTTQEMKFDDAIALGAMHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHIDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+S+ +G+RR++A+ G  A  +   +   +  L+  L      +  RV  +
Sbjct: 687 KIGAINIMSEASVGSGVRRVDAVVGAGAYEYNAREHALVSQLSDKLNARPDELAERVNAL 746

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--------DSKELKSVMDA 815
             + ++     A          +    + D N  +  +               L+  +  
Sbjct: 747 LAKLKESDRRLAAMYEGQLAATV-PQLVQDANASAASVKVAAKNVGHFGSFDALRKTVMD 805

Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
           ++ ++      ++ L G+S E K  V +       D    A DL R ++K+LGGGG GG+
Sbjct: 806 VRARLGEDAPVVVALAGVSAEDKPMVAVATNAAARDLGIKAGDLVRGASKMLGGGG-GGK 864

Query: 872 PHMAQSGGPNGNKADQAIAGVAS 894
           P  AQ GG + +K D+A+  + +
Sbjct: 865 PDFAQGGGADASKIDEALEALKA 887


>gi|50286987|ref|XP_445923.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525229|emb|CAG58842.1| unnamed protein product [Candida glabrata]
          Length = 956

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/965 (30%), Positives = 467/965 (48%), Gaps = 91/965 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
              ++R TF+++F++  H+ + SS ++P +DPTL+FTN+GM  +K IF G   P      
Sbjct: 10  TAHNVRKTFMDYFEEKNHKYVKSSPVVPFDDPTLLFTNAGMNQYKPIFLGTVDPSSDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  AW LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAIDYAWKLLTEV 129

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY+T ++         D EA  LWKK  G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPADRLYVTYFEGDAKQGLEPDTEALDLWKK-VGVPEDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +E+WNLVFMQF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNQDDPDVLEVWNLVFMQFNREQDGSLKSLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L    +++          G + + N    +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFMPLFARIQEITGARPYAGKFGDEDKDNIDTTYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           +  F +ADG +P NEGRGYVLRRI+RR   +AR             L P L  ++   +P
Sbjct: 308 TLVFALADGGVPNNEGRGYVLRRILRRGARFARKYMNYPIGNFFSSLAPTLIDQVKHIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGL 396
           E+ +    + E L  E+  F KTLDRG  + +   +   + E   L+G   ++LYDT+G 
Sbjct: 368 EVAKDPSFLFEILDEEESSFSKTLDRGERIFEKYAAAASQTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   + L  ID   F +A +E    ++      G    +    S+ E      
Sbjct: 428 PVDLTELMAEEQNLK-IDGPGFEKAKQESYEASKRGGQKGGDDLIKLNVHSIAELNSENV 486

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                                          V   +  +    + V E    G+K  ++ 
Sbjct: 487 ------------------PKTDDSFKYGNENVEGKILKLHDGEKFVTEISEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + D       +  +   G   H   +  G L  +  ++ + 
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDKAEFSVENVQLYNGFVFHTGTLSEGKLSVDDVIIASY 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L++AL   LG+ + Q GS + P+ LRFD +H K +T  E+  +
Sbjct: 589 DELRRFPIKNNHTGTHILNYALKETLGNDIDQKGSLVAPEKLRFDFSHKKALTIEEVTKV 648

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N+ I  N  V  + +  + A +     A+ G  Y D VRVVSV             
Sbjct: 649 ENICNEQIKNNYNVYYKDVPLDLAKSIYSVRAVFGETYPDPVRVVSVGKPVDDLLANPSN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736
           E+ G +S   CGGTHV +TG+I    I+ ES I  GIRRI A+TG  A            
Sbjct: 709 EEWGKYSIEFCGGTHVKTTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRVADQFAA 768

Query: 737 ------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                        +++KLK L   L       +S+ ++  +  +I +  +      AK++
Sbjct: 769 DLEAADKLPFSPLKEKKLKELGVKLGQLSISVISKNDLKTKFTKIEKVVKDEVKSRAKKE 828

Query: 779 LQLNVEDLSCH--KIADVNFMSHIISE-VDSKELKSVMDALQKKIQSGIIMLV-GISKEK 834
            +L ++++  H  +  +  F    I    ++K +   ++ ++   +   + L+ G   E 
Sbjct: 829 AKLVLDEVKGHFTENPESQFFVKFIDVPANAKAITEAVNYMKTSAKDKSMYLITGNDPEG 888

Query: 835 KASVLIVVTEDLLDRFNAV-DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           + +    +++  L++  A  +LA   + ++GG   GG+ ++ Q  G      + AI  + 
Sbjct: 889 RVAHGCFISDVALEKGIAGQELAGKVSGIIGGKA-GGKGNVFQGVGDKPAAINDAINEIT 947

Query: 894 SFLKK 898
           +  K+
Sbjct: 948 TAFKE 952


>gi|145616046|ref|XP_361064.2| hypothetical protein MGG_03607 [Magnaporthe oryzae 70-15]
 gi|145009817|gb|EDJ94473.1| hypothetical protein MGG_03607 [Magnaporthe oryzae 70-15]
          Length = 961

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/969 (32%), Positives = 470/969 (48%), Gaps = 95/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVY- 58
              ++R TFL +F++ GH ++PSSS++P +DPTL+FTN+GM  FK IF G      P+  
Sbjct: 8   TAETVRKTFLNYFEERGHTVVPSSSVVPHSDPTLLFTNAGMNQFKPIFLGTIGKTDPMAG 67

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI ++W+LLTK 
Sbjct: 68  LKRAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISMSWELLTKV 127

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY+T ++         D EA  LW + +G+  D I+     DNFW M + GPC
Sbjct: 128 YGLDPARLYVTYFEGNPEMGLEPDLEAKNLWLE-NGVPEDHILPGNMKDNFWEMGDQGPC 186

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WN VF+QF++Q  +    LP   +DTGMG
Sbjct: 187 GPCSEIHYDKV-GGRNAAHLVNMDDPLVVEVWNNVFIQFDRQQDKSLKSLPAKHVDTGMG 245

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
            ER+ + LQ KT+NY  D+F  L    ++V          G          +RV+ DH+R
Sbjct: 246 FERLVSALQNKTSNYATDVFSPLFARIQEVTGAREYTDKYGKDDADGIDTAYRVVADHIR 305

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYP 338
             +F IADG +P N+GRGYV+RR++RR + YAR     E       +LP L   MG  +P
Sbjct: 306 LMAFSIADGAVPNNDGRGYVVRRVLRRGVRYARKYFNAEIGGFFSQILPTLVEHMGEQFP 365

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           EL Q +  I+E L  E+E F +TLDRG    +    ++    +  L+G   ++LYDT G 
Sbjct: 366 ELGQKQQDIKEILDEEEEAFARTLDRGEKQFEKYASMAIKAGENKLSGSDVWRLYDTFGF 425

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P D+ + +   RG+           +   R +AR  S  +                    
Sbjct: 426 PEDLTKLMAEERGITID-----EAEVSVAREKAREASKAVKESVQ--------------T 466

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEV 513
           F   D+ R S+   E +          L   ++S V  I       +  +E      + +
Sbjct: 467 FAKLDVHRISELENELKVTRTDSEAKYLKGDITSKVYLIYTGKDFLKSSKEIPPKTPLGL 526

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T FYAE+GGQ+ DTG  + DG+        ++  G  +H+  +E G L    S++ 
Sbjct: 527 ILDKTNFYAESGGQIADTGRIVIDGVAEFKVLDTQEFGGYVLHNGYLEYGELTAGDSVIC 586

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R+ +  NH+ TH+L+H+L  +LG  ++Q GS +  + LRFD +H   +T  ELK
Sbjct: 587 EYDELRRQPIRNNHTGTHILNHSLREVLGDDINQKGSLVDNEKLRFDFSHKTGVTVPELK 646

Query: 634 SIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE---------- 682
            IED  N  I QN    T+ +         G  A+ G  Y + VRVVS+           
Sbjct: 647 KIEDLSNAYIRQNCKTFTKDVDLDLAKQIEGVRAVFGETYPNPVRVVSIGIEVDMLLENP 706

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------HL 735
              +    S   CGGTHV  TG +  + IV ES I  GIRRI A TG  A          
Sbjct: 707 KNPEWRKVSVEFCGGTHVDQTGIMKDMIIVEESGIAKGIRRIVAYTGDAAHQVQRLAADF 766

Query: 736 MGQDEKLKSL------ASFLKVSQGNVVGRV------EEIWEEYRKLQLIHAKRKLQLNV 783
             + ++L+SL       + +K +Q ++   V      +E+   + K+Q    + + +   
Sbjct: 767 SKRIDELESLPFGTEKEAAIKTTQVDLEQLVISSVTKDELRTRFTKIQKAVVEEQKKKQK 826

Query: 784 EDL------------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            +                K     F+  +    ++K +  +M+  + K +   + + G S
Sbjct: 827 AESKKALDTVAEHFKKPEKAESKVFIGQLPISANAKAVSEIMNFYKSKDKEKSVYVFGGS 886

Query: 832 KEKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           KE+ A V  + V T        A   A   ++V+GG  GG  P   Q  G      +QA+
Sbjct: 887 KEEGAVVHGVYVGTALASQGITAEQWANAVSEVIGGKSGGKEPTR-QGQGTKPENLEQAV 945

Query: 890 AGVASFLKK 898
           A    FL +
Sbjct: 946 AEAEKFLTE 954


>gi|167518337|ref|XP_001743509.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778608|gb|EDQ92223.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1000

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/925 (32%), Positives = 444/925 (48%), Gaps = 84/925 (9%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
           N + +R T+++FF +K  H   PSSS +P +DPTL+F N+GM  FK +F G   P     
Sbjct: 8   NAAKVRQTYIDFFVEKKEHVFWPSSSSVPHDDPTLLFCNAGMNQFKKVFQGTVDPNSDMA 67

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
                   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AIQ +++LLT+
Sbjct: 68  KVSRTVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKAEAIQWSFELLTE 127

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + L   RLY T ++ D         EA +LW K+  L AD ++     DNFW M  TGP
Sbjct: 128 VYGLSADRLYATYFEGDTEQNIPEDVEAKELWLKL--LPADHVLPGNKKDNFWEMGATGP 185

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           +++    +EIWNLVFMQF ++      +LP   IDTGM
Sbjct: 186 CGPCSELHYDRI-GGRNAASLVNQDDPDVLEIWNLVFMQFNREPDASLRLLPARHIDTGM 244

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--------IVNHRVIVDHLR 280
           GLER+ +VLQ+K +NYD D+F+      +QV G +                +RV+ DH+R
Sbjct: 245 GLERLVSVLQDKRSNYDTDVFQPYFDVIQQVCGCRPYAGKVGKEDDGIDTAYRVLADHIR 304

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  I+DG  P N GRGYVLR I+RRA+ +A   L   E     L+P +  ++G A+PE
Sbjct: 305 TLTISISDGGEPDNTGRGYVLRLIIRRAVRFAEDYLKAPEYFFSSLVPTVVEQLGDAFPE 364

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    + E L++E+++F +TL+RG  L          D +++G VA++L+ T+G P+D
Sbjct: 365 IKRDPEHVIEVLKAEEKQFRRTLNRGRRLFQRAADKAT-DGVIDGHVAWQLWGTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + + +   RGL  +D  +F       R  A   S        E I   + +         
Sbjct: 424 LTKVMAEERGLT-VDEKTFEA----AREEAVKVSQMGKKMAIEGIDLDVHDL-------- 470

Query: 460 YDLLRGSKFMKEDRKVLCQK----PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ---KVE 512
            D L+       D                   + + V A+  +   V+          V 
Sbjct: 471 -DKLKADGIAATDDSFKYDYGLVGDNSYEFKDLEAKVVALRTESGFVDSLDGSDDSVNVG 529

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSL 571
           VV D+T FYAE GGQ  DTG        L  T +  +K     +H  ++  G L+   +L
Sbjct: 530 VVLDRTNFYAEQGGQTYDTGFFRDANGELDFTVMDVQKKGPYCLHIGVLSNGTLKVGDTL 589

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L+ D + RR    NH+ATH+L+ AL  +LG    Q GS + P+ LRFD T  K +T  +
Sbjct: 590 TLSFDVERRRPCMSNHTATHVLNFALRKVLG-EADQKGSLVEPERLRFDFTAKKGMTIEQ 648

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV-- 688
           ++  E  VN+++    PV         A   +G  A+ G  Y D VRVVSV      V  
Sbjct: 649 IQQTEKLVNEVVNAKKPVDAMDAPLASAREINGLRAMFGETYPDPVRVVSVGAIVKDVLD 708

Query: 689 ---------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                    +S   CGGTHV ++G+I+   I++E +I  GIRRI A+TG  AR      +
Sbjct: 709 DPVSEVALANSIEFCGGTHVKNSGDIVQFAILNEEAISKGIRRIVAVTGSEARKAQTEAN 768

Query: 740 EKLKSLASFL----------KVSQGNVVG-RVEEIWEEYRKLQLI-----HAKRKLQLNV 783
                +   L          +VSQ  +   R + I    + L          +RK     
Sbjct: 769 RLDAEVRDDLTMKEVVALDTEVSQAAIPATRKDAIRSRLKALHKKHSDVLKERRKAMAGN 828

Query: 784 EDLSCHKIAD---VNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            +    ++ +      +  ++    + K +   +  L+        M  G+ +E   +  
Sbjct: 829 AEKRAKELLEEEAKPVVVEVLEVGANGKAIGEALKVLKVGRPDTAFMFFGV-EEGGVAFN 887

Query: 840 IVVTEDLLDR-FNAVDLARLSAKVL 863
            +V E L+ +   A D      KVL
Sbjct: 888 CMVPEALVAKGLKAGDWVSEVNKVL 912


>gi|254717705|ref|ZP_05179516.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
          Length = 768

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/776 (50%), Positives = 524/776 (67%), Gaps = 36/776 (4%)

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F L + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+
Sbjct: 1   FGLPKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFY 60

Query: 178 DQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G+ I GG PGS E +G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A V
Sbjct: 61  DHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAV 120

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEG
Sbjct: 121 LQGVHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEG 180

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ 
Sbjct: 181 RGYVLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEET 240

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG   +D  
Sbjct: 241 RFRKTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRG-IAVDTE 299

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            FN A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+               
Sbjct: 300 GFNVAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE--------------- 344

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                   T     ++ ++V+    V     G+ + VV +QTPFY E+GGQ GDTG   G
Sbjct: 345 --------TESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISG 396

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G  + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH A
Sbjct: 397 EGFVIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEA 456

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  
Sbjct: 457 LRETLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAV 516

Query: 657 EDAIASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           +DAIA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+
Sbjct: 517 DDAIAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRII 576

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL+
Sbjct: 577 SEGGVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLE 636

Query: 772 LIHAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              A  + +L +         +   +  VNF+  I++ V  ++LK + D  +K++ SG++
Sbjct: 637 RELADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVV 696

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + +G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+
Sbjct: 697 LFIGVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPD 752


>gi|110004987|emb|CAK99318.1| probable alanyl-trna synthetase protein [Spiroplasma citri]
          Length = 918

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/937 (30%), Positives = 474/937 (50%), Gaps = 96/937 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             ++IR  +L+FF+   H  LPS SLIP +DP+L++ NSG+   K  F G++ P    +T
Sbjct: 5   TANAIRKMWLDFFRSKDHYELPSVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+ L   K    
Sbjct: 65  NSQKSIRT----NDIENVGYTARHHTLFEMLGNFSIGDYFKKEAIMYAWEFLIDKKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+T+Y +D+EA+++W+ + GLS ++II+   + NFW +   GPCGP +EIF+D+G
Sbjct: 121 DPAKLYVTIYKDDQEAYEIWRNVIGLSDERIIKGDKDTNFWEIG-AGPCGPNTEIFYDRG 179

Query: 181 ECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E                E +RY+E+WN+VF Q+          LP+ +IDTG GLER+A+
Sbjct: 180 EKYDPEQIGLKLLQDDLENDRYLEVWNIVFSQYNNNGNGTYTDLPRKNIDTGAGLERIAS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------------IVNHRVIVDHLRSS 282
           ++QE   N++ DLF  +I+A E++   KY  +                  +VI DH+R+ 
Sbjct: 240 IIQETPTNFETDLFMPIIKAVEKLVNGKYHYDETALFSNNSEQLKINTAFKVIADHIRAV 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +F I DG  P N+ RGYV+RR++RRA  Y + +  TEP +  L+  +   M   Y  L++
Sbjct: 300 TFAIVDGAFPGNKDRGYVIRRLIRRASLYGKKIDLTEPFLFKLVGTVVKIMQEYYSYLVE 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            + ++E+ +  E+++F KTL++G  L + V +       ++ + AF+L++++G P+++++
Sbjct: 360 KQPIVEQAVLDEEKKFLKTLEQGSKLFNEVKTK---YGTISKEHAFRLFESYGFPIELIE 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +     G   +D   F++ LE  ++ +R +   + +   +   F+  +   A+QF+GY+ 
Sbjct: 417 EEAHEVG-INVDRAGFDELLENAKTISRTNRKDIKAIHLQSELFTKLDV--ASQFVGYE- 472

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                     ++ +  +    + V +        ++  +TPFYA
Sbjct: 473 ---------------------YEQVNNTEIVFMFADDKPVTKLT-NTTGYIILKETPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D G  + D     + DVQ+        H +   G L     +  +ID   R  
Sbjct: 511 EKGGQAADHGLILKDNTTAYVLDVQQ-GPNKQHLHFVKVEGTLAIGDLVNASIDSDRRFY 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS THL+H AL  +LG+HV Q GS    + LR D+TH++ IT AE+ ++E +V   
Sbjct: 570 TRKNHSGTHLIHAALREVLGNHVMQTGSYNDAERLRIDITHNQAITPAEITAVEGSVAKA 629

Query: 643 IAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   +P      + + A     A A    KY+  VR+V       G +S  LCGGTHV++
Sbjct: 630 IKTAIPCEIIYTDMQTALDVHHALAFFTEKYDAEVRIVKF-----GTYSCELCGGTHVAN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQ----------------RARSHL---------- 735
           + ++  L +    S  AG  RI AIT                   A ++           
Sbjct: 685 SQDVEDLLVTGLESKGAGTFRIHAITSNKTIASYLNEQFLKEKTEAINYFDKYNQGKAAL 744

Query: 736 --MGQDEKLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC--- 788
                D+  + +++          +   V +  E++++ Q  +    +Q  V+  +    
Sbjct: 745 LDQSLDQTWEQISNLTVSKPNWKQLKELVAQFKEDFKRWQKQYDNILIQQFVKQYNTFLP 804

Query: 789 HKIADVNFMSHII-SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                +NF++H   ++VD   LK ++D  + + ++ +I LV +S E +A++++ V++DL 
Sbjct: 805 QDKNGINFLTHQFTTKVDINALKVLIDDYKARYRNLLIFLVDVSDETQATLIVGVSDDLH 864

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           DR+ A  + +    +L  G GGG   +AQSG  N +K
Sbjct: 865 DRYQAGKIIQQLNPLLN-GKGGGNNSVAQSGFNNKDK 900


>gi|226328743|ref|ZP_03804261.1| hypothetical protein PROPEN_02643 [Proteus penneri ATCC 35198]
 gi|225201929|gb|EEG84283.1| hypothetical protein PROPEN_02643 [Proteus penneri ATCC 35198]
          Length = 589

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/617 (46%), Positives = 383/617 (62%), Gaps = 44/617 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +   Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDNRPYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEEWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY  D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYATDDEAYDIWNKEIGIPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMDPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NYDIDLF+ LI++  QVT          + RVI DH+RS SFL+ DG++
Sbjct: 243 RITAVLQHVNSNYDIDLFRSLIKSVAQVTNATD--LENKSLRVIADHIRSCSFLVCDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   M  A  EL + + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIEVMAEAGEELKRQQAIVEKVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L++L  D+IL G+ AF+LYDT+G PLD+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDEELANLT-DDILPGETAFRLYDTYGFPLDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EEQR RAR       S      + SL +    ++F GYD          
Sbjct: 420 -VDENGFDVAMEEQRKRARE------SSGFGTDYNSLIKVDSRSEFSGYDHDEQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI   G+ V E  +G++  +  ++T FYAE+GGQ+GD 
Sbjct: 467 -----------------QGTITAIFHNGQSVTELKAGEEGIIFLNKTAFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G     ++TD QK  +    H   V  G       +  TID   R  + +NHSATH
Sbjct: 510 GVLTGKDSLFEVTDTQKYGK-AIGHIGKVNVGSFIVNHKINATIDIARRDAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQN 608
           LLH AL  +LG+HV+Q 
Sbjct: 569 LLHAALRQVLGTHVTQK 585


>gi|322712022|gb|EFZ03595.1| alanyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 952

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/963 (31%), Positives = 464/963 (48%), Gaps = 94/963 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPVYQ--AV 61
           +R  F ++ Q+ GH ++PS S++P +DPTL+FTN+GM  FK IF G   Q  P+      
Sbjct: 11  VRKAFFDYMQQRGHTIVPSGSVVPYDDPTLLFTNAGMNQFKPIFLGTINQSDPMANLKRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK +RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI++AW++LTK + LD
Sbjct: 71  ADTQKVIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMAWEILTKVYGLD 130

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            +RLY T ++         D+EA +LW    G+  D+I+     DNFW M + GPCGP S
Sbjct: 131 PKRLYATYFEGNKELGLPPDDEAKQLWLD-IGMPEDQIVPGDMKDNFWEMGDQGPCGPSS 189

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWNLVFMQF++Q       LP   IDTGMG ERM
Sbjct: 190 EIHYDKI-GGRNAAHIVNQDDPMVVEIWNLVFMQFDRQKDGSLKPLPAKHIDTGMGFERM 248

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            + LQE  +NY  D F  L +  ++VTG++   +             +RVI DH+R+ SF
Sbjct: 249 VSALQETDSNYATDCFTPLFKQIQEVTGVRPYSDKYGKDDADGIDTAYRVIADHIRTLSF 308

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG +P ++GRGYV+RRI+RR + YAR     E       +LPAL + MG  +PEL++
Sbjct: 309 AITDGAVPNSDGRGYVIRRILRRGVRYARKYLNAEIGSFFSKILPALVSHMGDQFPELVK 368

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +L I+E L  E+E F +TLDRG    +     +     + L+GDV ++LYDT G P+D+
Sbjct: 369 KQLDIKEILDEEEEAFARTLDRGEAQFEKYAAKAAKAGVKKLDGDVVWRLYDTFGFPVDL 428

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RG     +      +   + +AR  S  + +         + +          
Sbjct: 429 TQIMAEERG-----LEIDESEVSVAKEKAREASKAVKASVDTFAKLDVHQI--------- 474

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVVFDQ 517
                   + + +          +       V+ I          +E      + ++ D+
Sbjct: 475 ------AQLDQQKVARTDDDAKFVKGDSKGKVQLIFDGKTFHNSTKELPEKTAIGILLDK 528

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE+GGQ+ DTG  + D +        +   G  +H   +E G L +   ++   D 
Sbjct: 529 TNFYAESGGQVADTGRIVIDDVVEFKVMDVQNYGGFILHSGYIEYGALSSGDEVICEYDE 588

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+H+L  +LG  ++Q GS +  + LRFD +H   +   EL+ IE 
Sbjct: 589 LRRSPIRNNHTGTHVLNHSLREVLGDDINQKGSLVDNEKLRFDFSHKSQVKIEELRKIET 648

Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEY-----------ED 685
             N+ I +N  + ++ +         G  A+ G  Y + VRVVS+             ++
Sbjct: 649 LSNEYIRRNSKIFSKDVDLDLARQIEGVRAVFGETYPNPVRVVSIGMDVDTMLKDPKKQE 708

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG-------- 737
              +S   CGGTHV  TG I  L +V ES I  GIRRI A TG+ A              
Sbjct: 709 WRQYSVEFCGGTHVEQTGLIKDLILVEESGIAKGIRRIIAYTGEAAHQVQREAAEFSKKL 768

Query: 738 -----------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
                      +D + K ++  L       +++  +  R ++I       Q    K +  
Sbjct: 769 DILEAMPFGPAKDAQTKVVSQELSQLVISTLTKDELNTRFQKIATSVIAEQKKRQKAEAG 828

Query: 781 LNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             V  +     +  DV++    +    ++K L  V    Q K ++  + + G S+E+ A 
Sbjct: 829 AAVGCVIKHFEEKEDVDYFVGRLPISANAKALTEVFKHFQAKDKTKSVYIFGGSQEEGAV 888

Query: 838 V--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           V  + V +        A   A + + V+GG  GG  P   Q  G      D A+     +
Sbjct: 889 VHGVYVGSGLASKGVTAEQWASVVSDVVGGRSGGKEPTR-QGQGTKPENIDDAVEVARKW 947

Query: 896 LKK 898
           L++
Sbjct: 948 LEE 950


>gi|88608446|ref|YP_506054.1| alanyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
 gi|123492337|sp|Q2GEP2|SYA_NEOSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88600615|gb|ABD46083.1| alanyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
          Length = 848

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/893 (39%), Positives = 508/893 (56%), Gaps = 56/893 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  F++FF KNGH  LPS+SL+P +DP+LMF N+GMVPFK  F    +  + ++ T QK
Sbjct: 5   LRKKFIDFFVKNGHTYLPSASLVPKDDPSLMFVNAGMVPFKEYFVDVRRAPFSSIVTAQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L +++LY
Sbjct: 65  CVRAGGKHNDLENVGFTKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELTLSKKKLY 124

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ITVY ED+EAF++W K++G    KI RI+T+DNFW M + GPCGPCSEIF+D GE + G 
Sbjct: 125 ITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQMGDIGPCGPCSEIFYDHGEHLSGD 184

Query: 187 LPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           +P   ++ GERY+EIWNLVFMQ+ ++   E   +    IDTGMGLER+A +L+   +NY 
Sbjct: 185 IPEDKKDPGERYVEIWNLVFMQYIREQSGELARMECPCIDTGMGLERVAAILEGTDDNYK 244

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             LF+ +++ S+ VTG K    N   H+VI DHLRS+SFLIADG+LP N GR YVLRRI+
Sbjct: 245 TKLFEAIVKESQNVTGNKD---NQAAHKVIADHLRSASFLIADGVLPGNTGREYVLRRII 301

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA+ Y+  LG+   L+  L   L   MGS Y EL +A+ LI +TL  E++ F  TL  G
Sbjct: 302 RRAVRYSHALGFDTVLLPKLFWVLKEWMGSHYQELTRAENLILDTLTLEEQSFRNTLKSG 361

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           + LL+ V S + + + L+GD+AF LYDTHG PLDI  DIL  R    +D   F + ++ Q
Sbjct: 362 MKLLEEVSSSMKEGDTLSGDIAFTLYDTHGFPLDITVDILKER-KISVDEEGFAERMKMQ 420

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           R  A+A  +   + T+     ++  ++G T FIGY+   G                    
Sbjct: 421 RLLAQASRMKDMAQTSSYEVKAVFLEHGKTPFIGYENFTGL------------------- 461

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               +++ AI        E     K+ ++ DQT FY E+GGQ  D G   G+   L++  
Sbjct: 462 ----ALILAI-------TEKEGSNKLTIILDQTIFYPESGGQESDQGIIEGENTLLKVEK 510

Query: 546 VQKKAEGIFVHHAIVERGILRT-EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           V K  EG+ +H   + RG + +    + L ID   R  L+ NHSATH+LHH L   LG+H
Sbjct: 511 VYKSTEGVILHECTIIRGQVTSRGEKVNLKIDINRRNSLARNHSATHILHHVLRKRLGAH 570

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           VSQ GS + P  LRFD +HS+ IT  EL  IED +N +I  + PV+T I   ++AI  GA
Sbjct: 571 VSQRGSLVAPSRLRFDFSHSQSITEEELSKIEDCINLMIWDDHPVMTEIKKTDEAIRDGA 630

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             L G KY+D VRVVS+        +  LCGGTHV  +  I L+ I+S SS+  G+RRIE
Sbjct: 631 IGLFGEKYDDTVRVVSIGE------AVELCGGTHVKKSSAIGLVKILSASSVAHGVRRIE 684

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQLNV 783
           A+T   A  ++   ++               +     ++    +  Q    +  +  +  
Sbjct: 685 AVTHLTALQYIREAEQ----------AQLYQLTEHQAKLKAMQKSHQKEITRVYQSIVTN 734

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            +    +   V  ++  +  +  + L S+   ++ K     +++V     +    LI++ 
Sbjct: 735 AEARTERYGSVEIITKNVQGISKEILLSLASEIRPKTG---VLIVHTELSEALYSLIILD 791

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +++    + +D  + +     G      P++ Q+        D+ +  ++  +
Sbjct: 792 KEIFKNISFIDSMKETIDKSHGKVTPSVPYVIQATFSKKEDLDRCLKNLSELV 844


>gi|320164762|gb|EFW41661.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 954

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/965 (30%), Positives = 443/965 (45%), Gaps = 91/965 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
            S++R  F++FF   GHE +PSSS+IP +DPTL+F N+GM  FK  F G   P      Y
Sbjct: 10  ASAVRQQFVDFFVSKGHEFVPSSSVIPHDDPTLLFANAGMNQFKPAFLGTADPNSRMAKY 69

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT  +
Sbjct: 70  RRTANSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKKEAISWAWELLTVVY 129

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD  RLY+T +        + D EA  +W    GL A++++     +NFW M ETGPCG
Sbjct: 130 KLDPNRLYVTYFGGNEKAGLEADLEARDIWLS-VGLPAERVLPYGMKENFWEMGETGPCG 188

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI FD+           + +    +EIWNLVF+QF ++  Q    LP+  +DTGMGL
Sbjct: 189 PCSEIHFDRIGGGRDAAALVNADDPDVLEIWNLVFIQFNREVDQSLRKLPRCHVDTGMGL 248

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F     A +  TG++               + +RV+ DH+R+
Sbjct: 249 ERIVSVLQNKRSNYDTDVFVPYFTAIQAATGIRAYTGKVGADDTDGLDMAYRVVADHIRT 308

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P   GR YVLRR++RRA+ Y A  LG        L+  + T +G  +PEL
Sbjct: 309 LTIALADGGAPGPTGRDYVLRRVLRRAVRYCAEKLGAKPGFFASLVDVVGTSLGGFFPEL 368

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
           +++   I++ +  E+ +F KTLDRG  L +   +   K+ ++ G VA++LYDT+G PLD+
Sbjct: 369 VRSPQDIKDIINEEEAQFRKTLDRGKRLFERAAA-ASKNGVIEGLVAWRLYDTYGFPLDL 427

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +     L  ID   F  A  + +  +     G      E +   +            
Sbjct: 428 TELMAAELKLT-IDKPGFKIAEADAKEAS----KGKVDEAEETVVLDVHNISA------- 475

Query: 461 DLLRGSKFMKEDRKVLCQ---KPPIDLTNGVSSIVKAIVQQGEIVEEAV----SGQKVEV 513
             L+       D         +            + AI    E+V         G KV +
Sbjct: 476 --LKDKGVPATDDSPKFNYRSENDKYTFESAVGSIVAIALGKELVSTVDFESLKGAKVGI 533

Query: 514 VFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V D+T FYAE GGQ+ DTG    + +       +  K      +H   ++ G L     L
Sbjct: 534 VLDKTNFYAEQGGQIFDTGFATRVDNEASEFAIESVKVYGPYVLHVGRLQGGSLSIGDKL 593

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L+ID   R  +  NH+ TH+L+ AL  +LG+ V Q GS + PD  RFD +H K +++ E
Sbjct: 594 TLSIDDIRRLPIMANHTTTHMLNFALREVLGNSVDQKGSLVRPDNFRFDFSHPKAVSTEE 653

Query: 632 LKSIEDNVNDIIAQN-LPVVTRIMNREDAIASGAAALLGTKYNDRVR-----------VV 679
           L+ IE  VNDII +N                +G  A+    Y D VR           + 
Sbjct: 654 LRKIEKIVNDIIEKNETVYRVPTALHLAKEVAGLRAVFDEVYPDPVRVVSVGVPVEKLLA 713

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                    +S   CGGTH+  T +     I  E  I  GIRRI  ITG+ A       D
Sbjct: 714 DPASASWKGYSIEFCGGTHIDRTRDARRFAIFREEGIAKGIRRISGITGKEAIEAYKTAD 773

Query: 740 EKLKSLASFLKVSQG----NVVGRVEEI---------WEEYRKL-----------QLIHA 775
           +    +    ++  G     +   +E +          +E +             +    
Sbjct: 774 KLEAKVKQVSEIPIGQLGRELPSLIESVDTAVIPSFRKDEIKAAIAAISKRVSDHEKAQQ 833

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
             + ++    +     A   F+   + +++    +  M A     +    +LV    +  
Sbjct: 834 AEQTKIATAAVKERIDAGAPFVVAFV-DINGN--RKAMSAGLSAAKDAAGLLVSKDGDS- 889

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP---NGNKADQAIAGV 892
              +  V + L+ +  A +    + K L     GG   + Q+ G    +    D A    
Sbjct: 890 IIAVASVPKALVGKIKAGEWVTEAVKSLSNTKTGGADTVGQASGTGSDHAAVIDAATKFA 949

Query: 893 ASFLK 897
           A+ L+
Sbjct: 950 AARLQ 954


>gi|221116701|ref|XP_002160302.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 998

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/966 (30%), Positives = 469/966 (48%), Gaps = 87/966 (9%)

Query: 2   SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
                +R  F++FF K   H  +PSSS IP  DPTL+F N+GM  FK++F G   P    
Sbjct: 42  KTAKQVRQDFIDFFVKKYDHIFVPSSSTIPHEDPTLLFANAGMNQFKSLFLGTADPNSDF 101

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              + V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG +FK+  I  +W+LLT
Sbjct: 102 AKLKRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDFFKKEIIAWSWELLT 161

Query: 116 KEFDLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             + L++ R Y+T +        DEEA + W ++ GL  + ++     +NFW M ETGPC
Sbjct: 162 DVWGLEKERFYVTYFGGADGVPADEEAKQFWLEL-GLPPNHVLPFGMKENFWEMGETGPC 220

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           + +    +E+WNLVF+QF ++   +   LP   +DTG+G
Sbjct: 221 GPCSELHYDRI-GGRDASNLVNMDVPDVLEVWNLVFIQFNREVDGQLVPLPNQHVDTGLG 279

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD D+F     A  Q TG+K          +    + +RVI DH+R
Sbjct: 280 LERIISVLQNKMSNYDTDVFTPYFDAIHQATGIKPYLGLVGPDDKDGVDMAYRVIADHIR 339

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ +A   L     +   L+  +CT +GS YP 
Sbjct: 340 TLTVALSDGGRPDNVGRGYVLRRILRRAVRFATEKLNCKPGVFASLVDVVCTSLGSVYPN 399

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           +++    I++ +  E+ +F KTL RG  L +        D I+ GD+A++LYDT+G P D
Sbjct: 400 ILKDPQTIKDIINEEESQFLKTLARGRRLFNRTADKTT-DGIIAGDLAWRLYDTYGFPSD 458

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   +   R L  +D++ +     + +  ARA   G        +     ++     F+ 
Sbjct: 459 LTILMAEERNLK-VDMVGYEVLKAKAQEMARAR--GSEVEDIYSLDVHAIDELKTKGFV- 514

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 +    +      +       +   +IV A+    + V+E  +G K  V+ D+T 
Sbjct: 515 -----QTDESPKYNYEKDEHGNYGNFSLCKTIVTALRVNKQFVDEVTNG-KCGVLLDRTS 568

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE GGQL DTG  I  G  ++      +  G +V H     G L+    +  +ID   
Sbjct: 569 FYAEQGGQLFDTG-YINLGEEVEFAVNDVQIHGGYVLHVGNLVGTLKVGDKVTCSIDESR 627

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR L  NH+ATHLL+ AL  +L     Q GS + PD LRFD T    ++S ++K  ED  
Sbjct: 628 RRSLMNNHTATHLLNFALRKVLVDDADQRGSLVAPDKLRFDFTAKGALSSEQVKMTEDIT 687

Query: 640 NDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE---------YEDGGVH 689
            +II Q+  V              G  A+    Y D VRV+S+           + G   
Sbjct: 688 REIIKQDQKVFASASSLAVAKNIQGLRAIFDEVYPDPVRVISIGYDLKDLINDPQAGYKT 747

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS-- 747
           S   CGGTH+ STG+++   IVSE +I  GIRRI ++TG  A       ++   +L    
Sbjct: 748 SVEFCGGTHLKSTGDVVEFAIVSEEAISKGIRRIVSLTGSDALKAHKRANQLASTLNEFS 807

Query: 748 ---------------FLKVSQGNVVGRVE----------EIWEEYRKLQLIHA--KRKLQ 780
                           L      +   +           E+ E+ + ++      +R  +
Sbjct: 808 EYVEVQKNNNTLNMRQLSQQIAKITEEISESLIPAWCKHELREKLKSIKKHLDDTERMEK 867

Query: 781 LNVEDLSCHKIADV-------NFMSHIISE-VDSKELKSVMDALQKKIQSGIIMLVGISK 832
            + ++    K +++        F+   + +  ++K L + + +++    +   ML  +  
Sbjct: 868 ASRQNRVIEKASEIATLHLNEPFIVQRMEDGCNAKALDAALKSVKAVAPNLSAMLFSVDT 927

Query: 833 E-KKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           E      L  V ++++D     A +  +  + V+GG G GG+P  AQ  G    + D+A+
Sbjct: 928 ETNTVICLCQVPQNVVDNTSLKANEWVKEVSTVIGGKG-GGKPISAQGSGDKMQEIDKAV 986

Query: 890 AGVASF 895
               SF
Sbjct: 987 EVAKSF 992


>gi|75858922|ref|XP_868801.1| hypothetical protein AN9419.2 [Aspergillus nidulans FGSC A4]
 gi|40747680|gb|EAA66836.1| hypothetical protein AN9419.2 [Aspergillus nidulans FGSC A4]
          Length = 981

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/989 (29%), Positives = 464/989 (46%), Gaps = 115/989 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R TFL++FQ  GH  + SS + P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 12  TSKLVRDTFLQYFQGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQ 71

Query: 59  -QAVTTVQK--CVRAGGKHN------------------DLDNVGRTNRHHTFFEMLGNFS 97
            ++    QK  C+RAGGKHN                  DLD+VG+ + HHTFFEMLGN+S
Sbjct: 72  LKSAVNSQKMQCIRAGGKHNVGWHPVQAGQVFANICEQDLDDVGKDSYHHTFFEMLGNWS 131

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSAD 149
           FG YFK+ AIQ +W+LLT+ + LD  RLY+T ++         D EA  LW K  G+  D
Sbjct: 132 FGDYFKKEAIQYSWELLTQVYGLDPGRLYVTYFEGNKEGGLQPDLEAKALW-KAVGVPED 190

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209
            I+     DNFW M + GPCGPCSEI +D+           +++    +EIWN VF+Q+ 
Sbjct: 191 HILPGNMKDNFWEMGDQGPCGPCSEIHYDRI-GGRNAASLVNQDDPNVLEIWNNVFIQYN 249

Query: 210 QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV---------T 260
           ++N      LP   +DTGMG ER+ +VLQ+K++NYD D+F  + Q  + +          
Sbjct: 250 RENDGSLRSLPNKHVDTGMGFERLVSVLQDKSSNYDTDVFGPIFQTIQVITGAREYQGRF 309

Query: 261 GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE- 319
           G          +RV+ DH+R+  F I+DG++P NEGRGYV+RR++RR   YAR     E 
Sbjct: 310 GTDDSDGIDTAYRVVADHVRTLMFAISDGVVPNNEGRGYVIRRVLRRGARYARKYFNVEI 369

Query: 320 -PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHL 376
                 ++P +  ++G  +PEL Q +  + E L  E+  F KTLDRG    +     +  
Sbjct: 370 GSFFSKIVPTVVEQLGDMFPELKQKQQDVIEILNEEEISFAKTLDRGERQFEQYAQQAKT 429

Query: 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
             D  L+G   ++LYDT G P+D+ + +   RG     +   ++  EE R +A+  S G 
Sbjct: 430 AGDHKLHGADVWRLYDTFGFPVDLTRIMAEERG-----LEIDDRQFEEARHKAKEASKGQ 484

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
              TT  +   + +                K  K +               V++ +KAI 
Sbjct: 485 KKTTTGSVKLDVHDLG--------------KLEKMNGVPKTDDSAKFEIGNVTAQIKAIY 530

Query: 497 QQGEI---VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
                    +     +++ ++ D+T FYAE GGQ  DTG  + DG         ++  G 
Sbjct: 531 HGKTFHSSTQNLDDSEQIGIILDRTNFYAEQGGQENDTGRIVIDGQAELEVVDVQQYAGY 590

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            +H   ++ G  + + +++   D   R  +  NH+ TH+L+ AL  +LG  + Q GS ++
Sbjct: 591 VLHTGYMKYGSFKVDDTVICEYDELRRWPIRNNHTGTHILNFALRGVLGDGIEQKGSLVS 650

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALLGTKY 672
            + LRFD +H  P+T  EL  IED     I +  L     +        +G  A+ G  Y
Sbjct: 651 AEKLRFDFSHKSPVTDVELVKIEDLSTQYIRRNCLVYSKEVPLSIARNIAGVRAVFGETY 710

Query: 673 NDRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            D VRVVSV                   S   CGGTHV  TG+I  L I+ ES I  GIR
Sbjct: 711 PDPVRVVSVGAELDEILKNVEDPRWADFSIEFCGGTHVQKTGDIKDLVILEESGIAKGIR 770

Query: 722 RIEAITGQRA-------------RSHLM------GQDEKLKSLASFLKVSQGNVVGRV-- 760
           RI A+TG+ A              +HL        +++  K +   L     + V +   
Sbjct: 771 RIIAVTGEDAHEVQRLAEEFEKRLNHLEAMPSGSAKEQNAKQIQVELNQLSISAVQKSRF 830

Query: 761 --------EEIWEEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKS 811
                   ++I +E +  Q + +K+ ++      +          ++ +    ++K +  
Sbjct: 831 RERFTQINKKIIDEQKAQQKLESKKAVESITSYFAAPENANKSWLIAKLPISANAKAVSE 890

Query: 812 VMDALQKKI-QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGG 869
            +  ++ K+    + +L    ++ + +    V + + D   +A + +   ++ +GG  GG
Sbjct: 891 CLTYVKTKLADKMVYVLASSLEDGRVAHGCYVPKAISDQGASASEWSSAVSRAVGGKAGG 950

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             P      G N  K D A+   + +L K
Sbjct: 951 KGPTS-IGNGINPEKVDDAVDLASEYLSK 978


>gi|261337332|ref|ZP_05965216.1| alanine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
 gi|270277705|gb|EFA23559.1| alanine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
          Length = 897

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/929 (34%), Positives = 481/929 (51%), Gaps = 69/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L +F++ GH ++PS+SLI  N PT +FT +GMVPF     G++ P    +
Sbjct: 1   MRTAEIAKRYLNYFEQQGHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPSHRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A+DLLT      
Sbjct: 60  ASNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYDLLTMPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ +L++T + +D+EA  LW+   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GLGFDKDKLWMTTFTDDDEARALWRNE-GVDPEHIQILGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  F   N + +        L   +IDTG GL
Sbjct: 175 VDRGPEY-GVEGGPIADENRYIEIWDLVFENFMVDNVKSKTDLHIVGELAHKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A E++TG+KY  +   +   RV+ DH+RS+  +++D
Sbjct: 234 ERVAYLLQGKQNIYETDEVYPVIEACEKITGIKYGDDKDADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LGY +P+M  LLP     M   YPEL      + 
Sbjct: 294 GVRPSNAGRGYVLRRLIRRTVEAMRVLGYQDPVMPQLLPVSEAAMEPNYPELAATFKDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-------ILNGDVAFKLYDTHGLPLDIM 401
           E    E++ F +TL  G+ + D  +     ++       ++ GD AF+L+DT+G P+++ 
Sbjct: 354 EAAYGEEDAFRRTLTNGIEIFDMAVKKAKDEDTDSTEPAVITGDTAFQLHDTYGFPIELT 413

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGY 460
            ++   +G+  +D   F + + EQ+SRAR  +L          +   K+       F GY
Sbjct: 414 LEMAAEQGVK-VDEAKFRELMAEQKSRARQDALKKRHNVDLSEYDDFKKTLESPIVFEGY 472

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTP 519
             +                          S V  I+++GE  V    +   VEV+ D TP
Sbjct: 473 TEVSTR-----------------------SRVIGIMKEGEGSVPAVTAPATVEVILDHTP 509

Query: 520 FYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FYAEAGGQL D G  I D    L++ DVQK  + + VH   +  G L     +  +ID +
Sbjct: 510 FYAEAGGQLADEGTIIADDGAVLEVDDVQKPIKDLIVHQCRLVEGTLVVGADVTASIDIE 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R  ++  H+ATH++H AL   LG H +Q GS   P+ LRFD   S   +   + S+E  
Sbjct: 570 RRGAIARAHTATHIVHKALREELGPHATQRGSEDAPNRLRFDFQWSSAPSKDLMNSVEAR 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN+ +  NL V T+ M  +DAIA GA  L G KY D VRVV++        S  LCGGTH
Sbjct: 630 VNERLRDNLRVSTQEMKFDDAIALGAMHLFGEKYGDIVRVVTIG---DDGWSRELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V   G+I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  
Sbjct: 687 VDYAGKIGQINIMSEASIGSGVRRVDALVGQSAYDFSAREHALVSQLSDTLNARPDELAD 746

Query: 759 RVEEIWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISE--VDSKELKS 811
           R+  +  + ++     +   + +L L V DL     +  D   ++            L+ 
Sbjct: 747 RINTLLGKLKESDRRLSAMYESQLSLMVPDLVQQTKQANDTVLVAVKNVGHFGSFDSLRK 806

Query: 812 VMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
            +  ++ ++ +    ++ L G++ + K  + +   E   +    A  L   +AK LGGGG
Sbjct: 807 TVMDVRNRLGADKPVVVALAGLTDDDKPMIAVATNEAAREQGIKAGALVSAAAKTLGGGG 866

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            GG+P  AQ GG +  K D A+A + + +
Sbjct: 867 -GGKPDFAQGGGSDAPKIDDALANLKAQV 894


>gi|212541448|ref|XP_002150879.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
 gi|210068178|gb|EEA22270.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
          Length = 1000

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/969 (30%), Positives = 461/969 (47%), Gaps = 95/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R  F+++F++ GH  +PSSS++P +DPTL+F N+GM  +K+IF G   P      
Sbjct: 51  TAERVRNEFIDYFKERGHTFVPSSSVVPVSDPTLLFANAGMNQYKSIFLGTVDPQSDFAH 110

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK  AI  +W+LLTK 
Sbjct: 111 LKRAVNSQKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKNEAITYSWELLTKV 170

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F LD  RLY+T ++         D EA  +W+K  G+  D I+     DNFW M + GPC
Sbjct: 171 FGLDPSRLYVTYFEGDAQGGLEPDLEAKDIWRK-VGVPEDHILPGNMKDNFWEMGDQGPC 229

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG
Sbjct: 230 GPCSEVHYDRI-GGRNAASLVNQDDPNVLEIWNNVFIQYNREADRSLRPLPNKHVDTGMG 288

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F  L +  +++          G +        +RV+ DH+R
Sbjct: 289 FERLVSVLQDKSSNYDTDVFMPLFRTIQEITGAREYQGRFGAEDADGVDTAYRVVADHVR 348

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           + +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +P
Sbjct: 349 TLTFAISDGAYPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTLVNQMGGMFP 408

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           E+ + +  + E L  E+  F KTLDRG    +     +       L+G   ++LYDT G 
Sbjct: 409 EIKEKQDEVMEALNEEEVSFSKTLDRGEKQFENYAQQAKSKGLNKLHGADVWRLYDTFGF 468

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL+ ID   F +     R +A+  S G      E +   + +      
Sbjct: 469 PVDLTQIMAEERGLS-IDEAEFEE----ARLKAKEASKGQKKAAAETVKLDVHDLG---- 519

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEV 513
                     K                 +  + S+VKAI      ++       G+++ V
Sbjct: 520 ----------KLDNMHEVPKTDDSSKFDSPKIESVVKAIYYSKSFIQTTADVPEGEQIGV 569

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T FYAE GGQ  DTG    +G         +   G  +H   ++ G L    S+  
Sbjct: 570 ILDRTNFYAEQGGQENDTGAIYINGKAELEVGDVQSYGGYVLHTGFIKYGSLAVGDSVTC 629

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D + R+ +  NH+ TH+L+ AL  +LG  ++Q GS +  + LRFD +H   ++  EL 
Sbjct: 630 EFDDRRRQPIRNNHTGTHILNFALREVLGDGINQKGSLVAAEKLRFDFSHKAGVSDKELD 689

Query: 634 SIEDNVNDIIAQNL-PVVTRIMNREDAIASGAAALLGTKYNDRVR-----------VVSV 681
            IE    + I QN       +        SG  A+ G  Y D VR           +  V
Sbjct: 690 QIERKSTEYIRQNCGVYSKEVPLATAREISGVRAVFGETYPDPVRVVSVGVEVEEILKDV 749

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH------L 735
           +       S   CGGTHVS +GEI  L I+ ES I  GIRRI A+TG  A          
Sbjct: 750 KDPRWNDISIEFCGGTHVSKSGEIRELVILEESGIAKGIRRIIAVTGDEALQAQLTAVEF 809

Query: 736 MGQDEKLK----------------------SLASFLKVSQGNVVGRV-EEIWEEYRKLQL 772
             + EKL+                      S+++  K    ++  R+ +++ ++ +  Q 
Sbjct: 810 EKRLEKLRTMEHGAAKETEMKQVQLELNQLSISAVQKAKFRDLFARINKQVLDDQKAQQK 869

Query: 773 IHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           +  K+   L        +      F++ + +  +SK +   ++ ++ K+    +      
Sbjct: 870 VELKKAQDLIKAYFDAEENKGRSTFVAKLPATSNSKVVSESINFIKSKMADKTVYFFAPD 929

Query: 832 -KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K +    V++   D   +    A + +  +GG  GG  P  A   G N +K D+ +
Sbjct: 930 PSGNKVAHGCHVSKAASDLGLSPSGWANVVSGAVGGKAGGKAPT-AIGNGTNPDKVDEGV 988

Query: 890 AGVASFLKK 898
           A    +L+K
Sbjct: 989 ALATEYLEK 997


>gi|313837754|gb|EFS75468.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314927365|gb|EFS91196.1| alanyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
 gi|314972691|gb|EFT16788.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
 gi|328907450|gb|EGG27216.1| alanine--tRNA ligase [Propionibacterium sp. P08]
          Length = 892

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/926 (32%), Positives = 467/926 (50%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF   GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFAGKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKSEAIQYAWELVTKPADQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+    I   +  DN+W M   G
Sbjct: 116 GLGFDPSSIWVTVLGPGFHPDYPEGDIEAREAWRA-AGVPDGHIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I  + +++G +Y    ++ +  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIAKASEMSGKRYGANHDDDIRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E+E F +TL  G  +LD  +  + +   + L+G+ AF+L+DT+G P
Sbjct: 354 VLTEWDRVISAATAEEETFRRTLSAGTAMLDAAVIDTKVSGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T+   ++     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRDKFTALMAEQRARAKADSKTKKGLLTDPEAYAQIRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L                        V++ V  I+  G  V  A  G  VEVV  +
Sbjct: 473 LGYTDL-----------------------TVNTTVTGIIANGTSVTAAGPGSVVEVVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +G  L++ DVQ+   G+ V H +   G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGFDLEVLDVQRPVPGLIV-HKVHLDGDLAVGDQVTAVVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  I+G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 TTRFGACQAHTATHVIHAALREIVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERTLVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + +  +   A  + +  +                +F++  +  V   +L+++
Sbjct: 745 DRVSKLVTDLKDAERKLAAARTRELMSQVDDIVAGATSAGSFDFIAAKVPGVVGNDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L +     +GG G GG
Sbjct: 805 ASEVRGRVKDRPAVVTLIGGTDDKPAMIVAATESARAAGAKAGALIKAGIARIGGRG-GG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           R  MAQ  G +    D A+  V + L
Sbjct: 864 RDDMAQGAGSDSAGIDAALRAVDTEL 889


>gi|224083946|ref|XP_002307181.1| predicted protein [Populus trichocarpa]
 gi|222856630|gb|EEE94177.1| predicted protein [Populus trichocarpa]
          Length = 973

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/900 (31%), Positives = 421/900 (46%), Gaps = 92/900 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
            + +R TF++FF++  H    SS ++P NDPTL+F N+GM  FK IF G   P       
Sbjct: 66  ANRVRDTFIKFFEEKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 125

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK +
Sbjct: 126 SRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 185

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        EA  +W +   L   +++     DNFW M +TGPCG
Sbjct: 186 KLPADRIYATYFGGDEKAGLAPDNEARDIWLQF--LPPGRVLPFGCKDNFWEMGDTGPCG 243

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 244 PCTEIHYDRVGN-RNAAMLVNNDDPTCLEIWNLVFIQFNRESDGSLKSLPAKHVDTGMGF 302

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F  +  A +Q TG +               + +RV+ DH+R+
Sbjct: 303 ERLTSVLQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDVDGVDMAYRVVADHIRT 362

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRRI+RRA+ Y    L   E     L+  +   M   +PEL
Sbjct: 363 LSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNVVVKVMSDVFPEL 422

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            + +  I ET+ +E+  FGKTL +G+         +    +        L    G     
Sbjct: 423 KRNEEHIRETIAAEEASFGKTLLKGIEKFKKAAQEVEGKVLSGQARCVCLV---GYIWLP 479

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
           ++     RGL  +D+  FN A++E R R+R        G                     
Sbjct: 480 IRFDSEERGLR-VDVEGFNNAMDEARERSRNAQNKQAGGAIVM----------------- 521

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D    S   K+                  S++KAI    E +E A +  +V +V + T F
Sbjct: 522 DADATSALHKKGVSATDDSFKFICFEDHESVIKAIYNGSEFLESAAAANEVGIVLESTSF 581

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH-HAIVERGILRTEMSLVLTIDYQN 579
           YAE GGQ+ DTG   G     Q+ +VQ     I          G       +   +DY  
Sbjct: 582 YAEQGGQIFDTGVLEGPFGSFQVCNVQIFGGFIVHIGSLTGVSGRFSVGEKVTCKVDYDR 641

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KP+    L+ IE  V
Sbjct: 642 RKLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPELLRKIESIV 701

Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGG 687
           N  I   L V  +     +A   +G  A+ G  Y D VRVVS+             E+  
Sbjct: 702 NGQIKDELGVFAKEATLAEAKQINGLRAVFGEVYPDPVRVVSIGRKVEDLLANPENEEWL 761

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S+ LCGGTH+++T E     ++SE  I  GIRRI A+T   A   +       + +  
Sbjct: 762 SISAELCGGTHITNTREAKAFALLSEEGIAKGIRRITAVTTDGAFKAMELAHSLEQEVDE 821

Query: 748 FLK------------------------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
             K                          + ++  ++  +  + RK Q   A+  +Q  V
Sbjct: 822 ASKADGSLLEKKVASLKTRVDSALIPAAKKADIRAKISVLQNKVRKAQKKIAEENMQKAV 881

Query: 784 E-DLSCHKIADVNF----MSHIISEVDSKELKSVMDAL---QKKIQSGIIMLVGISKEKK 835
           E      ++A  +     +SH+   +D+  ++  +  +   + K   G+      + + K
Sbjct: 882 EVAAEMAEVASSDGKAFCISHVDVGLDAAAVREAVLKVLERKHKQGCGVCWCAREAGQGK 941


>gi|328858383|gb|EGG07496.1| hypothetical protein MELLADRAFT_48072 [Melampsora larici-populina
           98AG31]
          Length = 966

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/968 (32%), Positives = 483/968 (49%), Gaps = 96/968 (9%)

Query: 4   VSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
              +R TF+ +FQ+   H+ +PSSS+ P +DPTL+FTN+GM  +K+IF G   P      
Sbjct: 18  AKKVRKTFINYFQEKYQHQFVPSSSVCPLDDPTLLFTNAGMNQYKSIFLGTIDPSNPLSK 77

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE  +++AW+LLT+ 
Sbjct: 78  IKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEDGLKMAWELLTEL 137

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T ++ DE        E+ ++W ++ G+  D I+     DNFW M  TGPC
Sbjct: 138 YGLPKDRLYVTYFEGDEKQGLEPDLESKRIWLEL-GVQEDHILPGNAKDNFWEMGATGPC 196

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+      G    +++    IEIWN VF+++ +++      LP   +DTGMG
Sbjct: 197 GPCSEIHYDRVGGRNAGS-LVNQDDPLVIEIWNNVFIEYNRESDGSLKELPSKHVDTGMG 255

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLR 280
            ER+ ++LQ+K +NYD D+F+ + +  +Q+T         G++ +      +RV+ DH+R
Sbjct: 256 FERLVSILQDKKSNYDTDIFRPIFEKIQQLTGARPYEGKLGIEDQDGIDTAYRVVADHIR 315

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F I+DG +P N GRGYVLRRI+RR   Y R             L+P L  +MG  +P
Sbjct: 316 TLTFAISDGGVPNNVGRGYVLRRILRRGARYIRKKFNVPIGTFFSKLMPTLIEQMGDEFP 375

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGL 396
           E+ + +L + E L  E++ F  TLDRG  + +   +       ++L+G   +KLYDT G 
Sbjct: 376 EIEKRRLEVIEILNEEEDSFSLTLDRGEKIFEKYCNRVKKNNGKVLDGKEVWKLYDTFGF 435

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +    G  GID   F  A  E +  ++     +     E    S+      + 
Sbjct: 436 PIDLTLLMAEEAG-IGIDQDGFEIAQSESKELSKGGKKKIVGAGVELDVHSIAVLESNS- 493

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                                          +++ VKAI Q GE     +E  SG+   V
Sbjct: 494 ----------------SVPKTDDSSKFSLTTINATVKAIFQAGEFYSSSKELKSGEPFGV 537

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T FYAE GGQ  DTG  I +G  +   +  +   G  +H   +  G ++ E  +  
Sbjct: 538 ILDKTNFYAEQGGQENDTGTLIIEGEMIFDVEDVQVFNGYVLHIGNLSEGEIKKEDLVQS 597

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           + D   R+ +  NH+ TH+L++AL   LG H+ Q GS ++ +  RFD +H + + ++EL+
Sbjct: 598 SFDELRRKPIKNNHTGTHILNYALRETLGDHIDQKGSLVSSNKFRFDFSHKQQVKASELE 657

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE-------- 684
            IE   ND I +N  V ++ M   +A    G  A+ G +Y D VRVV +  E        
Sbjct: 658 QIEKICNDWILKNHSVYSKEMKLSEAEKIPGLRAVFGERYPDPVRVVVIGPEPIELDADQ 717

Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH------ 734
                   +S   CGGTHV  T EI  L +V ES I  GIRRI A+TG+ A++       
Sbjct: 718 LNESKWLNYSVEFCGGTHVKKTNEIKELILVEESGIAKGIRRIVAVTGEEAKTVIELANE 777

Query: 735 ------------LMGQDEKLK---------SLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
                       +  +++ LK          ++   K       G V+    E  KLQ  
Sbjct: 778 LNLKLDKIIELPIKEREQGLKGFSVELAGIEISVIEKSKIKEKFGVVQRELIELGKLQTK 837

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK- 832
             ++K    V+D       +   +  +    ++K L S    L+ + ++G   L  I+K 
Sbjct: 838 ADEKKATQLVKDWIEVHPNERVMIDVLDVGSNTKCLMSACGILKNEGKAG--YLFSINKS 895

Query: 833 EKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K   +  +T++++ D +NA        KVLGG G GG+   AQ  G   NK ++AI  
Sbjct: 896 DGKIVHVNSLTKEMVQDDWNAKIWMDEIIKVLGGKG-GGKGDTAQGVGDQINKVNEAIEI 954

Query: 892 VAS-FLKK 898
               FL K
Sbjct: 955 AKKSFLNK 962


>gi|302923886|ref|XP_003053770.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734711|gb|EEU48057.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 956

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/966 (31%), Positives = 469/966 (48%), Gaps = 94/966 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVY-- 58
            + +R TFLE+F++ GH ++PSSS++P NDPTL+FTN+GM  FK IF G      P+   
Sbjct: 10  AARVRQTFLEYFEQRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTDPMAGL 69

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +A    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ A+Q +W+LLTK +
Sbjct: 70  KAAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAVQYSWELLTKVY 129

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD  RLY+T ++ DE        EA  LW    G+  D I+     DNFW M + GPCG
Sbjct: 130 GLDPARLYVTYFEGDEKLKLEPDLEAKDLWLS-VGVPEDHILPGNMKDNFWEMGDQGPCG 188

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           + +    +EIWN VFMQ+++Q       LP   IDTGMG 
Sbjct: 189 PCSEIHYDKI-GGRNAANLVNMDDPMVVEIWNNVFMQYDRQKDGSLKSLPAKHIDTGMGY 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRS 281
           ER+ + LQ   +NY  D F  L +  E+V          G          +RV+ DH+R+
Sbjct: 248 ERLVSALQNTVSNYATDCFTPLFKKIEEVTGARPYSDKYGKDDADGIDTAYRVVADHIRT 307

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            SF IADG +P N+GRGYV+RR++RR + YAR     +       +LPAL  +MG  +PE
Sbjct: 308 LSFSIADGAVPNNDGRGYVVRRVLRRGVRYARKYFNADIGAFFSKILPALVDQMGEQFPE 367

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397
           L++ +  I+E L  E+  F +TLDRG    +   +   KD  + L GDV ++LYDT G P
Sbjct: 368 LVKKQQDIKEILDEEEVAFARTLDRGEAQFEKYAAQAVKDGSKKLEGDVVWRLYDTFGFP 427

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +   R      +   +  +E  R +AR  S  +                    F
Sbjct: 428 VDLTRLMAEERS-----LEIDDAEVEAARIKAREASKAVKESVQ--------------TF 468

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK---VEVV 514
              ++ + ++  ++ +          L       V+ I      ++      +   + ++
Sbjct: 469 SKLNVHQIAELEQQLKVERTNDDAKFLQGDSKGKVQLIYDGKTFLKSTKDIPEKTALGLL 528

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D T FYAE+GGQ+ DTG  + D +        +   G  +H   +E G L +   ++  
Sbjct: 529 LDNTNFYAESGGQVADTGRIVIDDVAEFNVLDVQNFGGYILHSGYIEYGALNSGDEVICE 588

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+H+L  +LG  + Q GS +  + LRFD +H   +   ELK 
Sbjct: 589 YDELRRSPIRNNHTGTHILNHSLREVLGDEIHQKGSLVDNEKLRFDFSHKTGVKIEELKK 648

Query: 635 IEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE----------- 682
           IED  N+ I +  P+ ++ +         G  A+ G  Y + VRVVS+            
Sbjct: 649 IEDRSNEYIRRGSPIFSKDVDLDLARQIEGCRAVFGETYPNPVRVVSIGKDIDEMLADPK 708

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS--------- 733
             +   +S   CGGTHV  TG I  L ++ ES I  GIRRI A TG+ A           
Sbjct: 709 NVEWRQYSVEFCGGTHVEQTGLIKDLILIEESGIAKGIRRIIAYTGEAAHQVQREAAEFA 768

Query: 734 ---------HLMGQDEKLKSLASFLK------VSQGNVVGRVEEI----WEEYRKLQLIH 774
                        ++ ++K+++  L       +++  +  R ++I      E +K Q   
Sbjct: 769 KKLDALEKLDFAEKESQVKAVSVELSQLTISTLTKDELNKRFQKISTAVVAEQKKRQKAE 828

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           AK  L   ++    ++ A   F+  +    ++K +  V+   Q K +   + L G SKE+
Sbjct: 829 AKTALDTVLKHFKANEDAKW-FVGRLPIGANAKAVGEVVKHFQGKDKEKSVYLFGGSKEE 887

Query: 835 KASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            A V  + V T        A   A   ++V+GG  GG  P   Q  G      D  +   
Sbjct: 888 GAVVHGVYVGTHLSSQGVTAEQWAASVSEVIGGRSGGKEPTR-QGQGTKPENLDDGVETA 946

Query: 893 ASFLKK 898
             +L +
Sbjct: 947 TKWLSE 952


>gi|219124287|ref|XP_002182439.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406400|gb|EEC46340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 955

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/954 (30%), Positives = 450/954 (47%), Gaps = 79/954 (8%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
             +R TF  +F +++GH   PSS  +P +DPTL+FTN+GM  +K +F G   P       
Sbjct: 18  EKVRDTFKNYFVEQHGHVFWPSSPCVPVDDPTLLFTNAGMNQYKPLFLGTCDPNLEMSKL 77

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI +AW  LT  F
Sbjct: 78  TRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKAGAIDMAWQCLTVTF 137

Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            LD  RLY T +        DEEA +LW +   L  D+++     DNFW M  TGPCGPC
Sbjct: 138 GLDPERLYATYFAGDELTPVDEEARQLWLRY--LPDDRVLPFDARDNFWEMGATGPCGPC 195

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI +D+           + +    +EIWN+VF+Q+ ++       LP   +DTGMG ER
Sbjct: 196 TEIHYDRI-GGRDASKLVNADLPDVMEIWNVVFIQYNREADGSLRPLPAQHVDTGMGFER 254

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSS 283
           + ++LQ   +NYD D+F  L  A + +T         G +      + +RV+ DH+R+  
Sbjct: 255 LTSILQNVDSNYDTDIFIPLFTAIQNITGARPYAKKVGKEDPEYIDMAYRVVADHIRTLC 314

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           F I DG +P+N+GRGYVLRR++RRA+ Y R  LG        L+PA    MGSA+PE+++
Sbjct: 315 FAITDGAVPSNDGRGYVLRRVLRRAVRYGRQNLGAELGFFAKLVPAFVDVMGSAFPEVVE 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            +  +   ++ E+E F +TLD+GL   + +   +G D+I +G  A  LY + G P+D+ +
Sbjct: 375 KQEYVTGIIQEEEESFSRTLDKGLQKFNELAEKVGADQIFSGADAHFLYTSMGFPVDLTE 434

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            +   +G+  ++   F   ++E+   ++A  L   +G + K    + E+   +  +G ++
Sbjct: 435 LMAEEKGMT-LNKEEFEAKMQEEHDISQAAHLAKMAGGSGKDMRLVAEQ--TSYLVGQNI 491

Query: 463 LRGSKFMKE-------DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
                  K        D  V       + T  +   V +I  +   V          +V 
Sbjct: 492 SATDDAAKYVWHEELADCVVKACFIGRNETEDMIGFVGSISPESSAV---------GIVL 542

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D++ FYAEAGGQ+ D G        +      +      +H   V  G L    ++  ++
Sbjct: 543 DKSSFYAEAGGQVYDVGTLTSSTGAVVKITNVQAYGQFVLHLGEVASGTLSVGDTVKCSV 602

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGS------------HVSQNGSCITPDGLRFDVTH 623
           DY  R  ++ NH+ TH+L+HAL  +L               V Q GS +    LRFD + 
Sbjct: 603 DYVRRAPIASNHTMTHVLNHALREVLIKRPEKESGKTSTLTVDQKGSLVDETKLRFDFSW 662

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE 682
           S  +T  +L  +E    D I   +PV   +    DA   S   A+ G KY D VRVV+V 
Sbjct: 663 SGQLTPEQLAEVEKLCMDRIVNAVPVDAYVAPLGDAQQISSLRAVFGEKYPDPVRVVAVS 722

Query: 683 YE------------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                             +S   CGGTH+++T E     +++E  I  GIRRI AIT   
Sbjct: 723 DHAVPEMLANPQDSQWNEYSVEFCGGTHLTNTKEAEAFVLLAEEGIAKGIRRITAITTGE 782

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-----QLIHAKRKLQLNVED 785
           A+  +   +E    L +   V   ++   V+++  E   L     + +  + +L    + 
Sbjct: 783 AKKAIALANEFESKLTAAEVVQGDDLESTVKQLSAELDGLDIAAVKKMQFREQLATMTKQ 842

Query: 786 LSCHK----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           +  +K          +      V+ K  KSVM A  K+++   ++LV    E    ++I 
Sbjct: 843 VLAYKKQKLAGGSKVVMRFDFGVEGKVAKSVMTAFGKQVKDKALLLVTADPEADRFMVIA 902

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
                +   N       +A       GGG+P  AQ         D  +     F
Sbjct: 903 GAPKAMKDLNCKAWI-EAATDGLDAKGGGKPDSAQYQVSGVEAVDTVLEKARKF 955


>gi|326434145|gb|EGD79715.1| alanyl-tRNA synthetase [Salpingoeca sp. ATCC 50818]
          Length = 955

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/959 (31%), Positives = 460/959 (47%), Gaps = 79/959 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
               +R  F+ +F++ GH+  PSSS IP NDPTL+F N+GM  +K  F G +        
Sbjct: 9   TADKVRGKFISYFEERGHKFWPSSSTIPFNDPTLLFANAGMNQYKAKFLGTDSKDTDLGK 68

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y+KE AI  +WDLLT  
Sbjct: 69  LTRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYWKEEAIDFSWDLLTNV 128

Query: 118 FDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           F LD  RLYIT ++       DEE   LW K   +  ++I+     DNFW M ETGPCGP
Sbjct: 129 FQLDPNRLYITYFEGDSVVPADEETRSLWMK--HVPPERILPFDRKDNFWEMGETGPCGP 186

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           C+EI +D+           + +    +EIWNLVFMQ+  +       LP   +DTGMGLE
Sbjct: 187 CTEIHYDRI-GGRDASHLVNMDDPDVLEIWNLVFMQYNNEGNGVLKTLPAQHVDTGMGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLRSS 282
           R+ +VLQ KT+NYD DLF  +  A ++  G +                 +RV+ DH+R+ 
Sbjct: 246 RILSVLQNKTSNYDTDLFLPIFAAIKEKCGCREYTGKVNEADTDMVDTAYRVVADHIRTL 305

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341
              IADG  P  +GRGY+LR ++RRA+ +    LG  E     L+P +   +G A+PEL 
Sbjct: 306 CIAIADGGRPDKDGRGYILRLVLRRAIRFCEEYLGAPEYFFASLVPVVVDVLGDAFPELR 365

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +        L+ E+ +F +TL RG       ++ +G+D +++GD A++L+DT+G P+ + 
Sbjct: 366 KDPEETIAVLKEEERQFRRTLSRGRRYFKRAVAAVGEDGVIDGDTAWRLWDTYGFPIHLT 425

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
             +   RGL  +D+  F  A       +RA     G    +    +L E           
Sbjct: 426 IVMAEERGLK-VDMDGFEAAKARAVEISRAGGAA-GETNLDLDVNTLDELKKK------- 476

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE--EAVSGQK---VEVVFD 516
            + G+    +      +      ++   +++  + ++G +V+        +   V VV D
Sbjct: 477 GVPGTDDAAKYAYTRDENGSYSFSDAEGTVLALLTEEGGLVDRVSVSEDDEELPVGVVLD 536

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG--IFVHHAIVERGILRTEMSLVLT 574
           +T FYAE GGQ+ DTG            DV    +     +H A + +G L+    L L 
Sbjct: 537 KTNFYAEQGGQIYDTGRFESTTGAPLELDVFNVQKRGAYCLHVATLAQGELKVGDKLTLK 596

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D+  RR    NH+ATH+L++AL ++LG    Q GS + P+ LRFD T  K +T  +LK 
Sbjct: 597 FDHDRRRPCMSNHTATHVLNYALRSVLG-EADQKGSLVEPERLRFDFTAKKGMTPEQLKQ 655

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDGG------ 687
            E+ VN I+  N  V  +      A   +G  A+ G  Y D VRV+SV            
Sbjct: 656 TEEVVNKIVNANYTVYDKDTPLAQARAINGLRAMFGETYPDPVRVLSVGASIDDMVADPA 715

Query: 688 -----VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
                 +S   CGGTHV ++G+I    I+SE ++  GIRRI A+TGQ A       D   
Sbjct: 716 ASYAVDYSVEFCGGTHVKNSGDIGPFTILSEEAVAKGIRRIVAVTGQEALKAHRAADAYE 775

Query: 743 KSLASFLKVSQGNVVG-----------RVEEIWEEYRKLQLI-----HAKRKLQLNVEDL 786
           + +   L   +   +            R EE+    + +         A+RK +      
Sbjct: 776 RRIRDDLDAKEVTSLDAELGTATIPAVRKEEMRARLKAMSKKHAEARLAERKAKAAHAKT 835

Query: 787 SCHKIADVN---FMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             +++ +     F+   +    ++K +   +  L+KK+     M  G ++E   +    V
Sbjct: 836 RANELIEEKPEGFVVETLDVGANAKAIGEALKLLKKKLPDVAFMFFG-AEEGAVAYTCQV 894

Query: 843 TEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHM-AQSGGPNGNKADQAIAGVASFLKK 898
            + ++      A +  +   +VLGG G  G   + AQ    +  K   A     +++++
Sbjct: 895 PKAMVDEKGIKASEWIKRVNEVLGGRG--GGRDLVAQGTADDSTKLTLAQEAARAYIEE 951


>gi|49119610|gb|AAH73734.1| LOC443692 protein [Xenopus laevis]
          Length = 1005

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/963 (29%), Positives = 447/963 (46%), Gaps = 79/963 (8%)

Query: 3    NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
            + ++IR  FL +F +K+GH  +PSSS+ P  DP+L+F N+GM  FK IF G   P     
Sbjct: 53   SAAAIRRAFLRYFQEKHGHRHVPSSSVRPRGDPSLLFVNAGMNQFKPIFLGTADPRSDMA 112

Query: 57   VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             Y+ V   QKCVRAGGKHNDL++VGR   HHTFFEMLGN+SFG YFKE A  +AW LLT+
Sbjct: 113  QYRRVVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGNWSFGDYFKEEACSMAWQLLTQ 172

Query: 117  EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
             + + + RLY+T +          D+E  ++W  + G+   +++     +NFW M ETGP
Sbjct: 173  GYGIPEDRLYVTYFGGEPTLGLSADQETQEIWLSL-GVPPARLLPFGLKENFWEMGETGP 231

Query: 169  CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            CGPC+EI +D            +++    +EIWNLVFMQ+ +++ +   +LP+  +DTGM
Sbjct: 232  CGPCTEIHYDHV-GGRNAASLVNQDSPDVVEIWNLVFMQYNRESDRSLRLLPQQHVDTGM 290

Query: 229  GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279
            GLER+ TVLQ K +NYD DLF  +++A  +         + G +   +  + +RV+ DH+
Sbjct: 291  GLERLVTVLQGKRSNYDTDLFSPILEAIMKGSRAPQYQGLMGKEDTEHTDMAYRVVADHI 350

Query: 280  RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338
            R+    IADG+ P   G   VLRRI+RRA+ ++   L      +  L+P++   +G A+P
Sbjct: 351  RTLCVCIADGVYPGMSGAELVLRRILRRAVRFSSEILRAPPLFLSSLVPSVVHVLGEAFP 410

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            EL + K  I   L   +E F  +L +G  ++D  L    + +     VA+ L+   G PL
Sbjct: 411  ELEREKSQIMNILNENEEAFLISLQQGRRIIDRTLQQQEEPQTFPVGVAWSLHRNLGFPL 470

Query: 399  DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
            D++  +L  RG++       +  +EE   + R           E    S+ E        
Sbjct: 471  DLIGLMLEERGISLDKAAMDHLTVEEAERKMRNQQADEAQTGLELDVHSMAELQR----- 525

Query: 459  GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                     +     + V  + +   +  E   GQ+  V+ DQT
Sbjct: 526  ---RGVPCTNDSPKYNYTLAADGKYVFGPCRATVLMLYKDHSLHSEIDKGQRCGVILDQT 582

Query: 519  PFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
             FYAE GGQ  D G  +  D           +  G ++ H +    +LR    LVL +D 
Sbjct: 583  CFYAEQGGQSCDQGYFVRKDQQEALFPVESVQVAGGYMLHEVTTPEVLRVGDQLVLYLDE 642

Query: 578  QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             +R      H+ATHLL++ L  +LG +  Q GS +T + LRFDV+ + P+   +L+ +E 
Sbjct: 643  AHRLACMQKHTATHLLNYTLHQVLGENTVQRGSHVTAERLRFDVSVTAPVHVEQLQEVEQ 702

Query: 638  NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV----------EYEDGG 687
             + D+I+Q+  + T ++    A        +   Y + VRVVSV            +   
Sbjct: 703  VLQDLISQDEEIHTALVPLTAAKCVRGLRTVDEAYPNPVRVVSVGIPVDVALKPGSQAAL 762

Query: 688  VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK---S 744
              S  LC GTH+ +TG I  + IVSE  +  GI R+ AITG+ A+       E ++   S
Sbjct: 763  QTSVELCCGTHLLTTGAIQDVVIVSERPLAKGITRLIAITGEEAKQARETGHELVRAVES 822

Query: 745  LASFLKVSQGNVVGRV-----------------------EEIWEEYRKLQL------IHA 775
            +   +K    ++                           +E+  + + LQ          
Sbjct: 823  ITERMKTKPLSLNEGFHLSKEVGILTDSVDSATMPQWQRKELQAKLKALQRNANTNIRKL 882

Query: 776  KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            + K    +      K +  + +   +S      L  V++ +        +ML      +K
Sbjct: 883  EVKQAAVIAQGLLKKHSRCSLIIDKVSVESLSMLVKVVNQVCDGSPGASVMLFSKQDSEK 942

Query: 836  ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
                  V +      +A + A      + GG  GG   +A+  G   +  D+ +    +F
Sbjct: 943  VFCACQVPKGSGSELSAAEWATTVCSEM-GGNAGGSDVVAKGTGT-IDSLDRVLQTAQNF 1000

Query: 896  LKK 898
             +K
Sbjct: 1001 AQK 1003


>gi|21910594|ref|NP_664862.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|21904795|gb|AAM79665.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
          Length = 825

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/871 (34%), Positives = 460/871 (52%), Gaps = 66/871 (7%)

Query: 46  FKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKER 105
            K  F G   P    +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ 
Sbjct: 1   MKKYFDGSVIPENPRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDE 56

Query: 106 AIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM 163
           AI+  ++LLT    FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +
Sbjct: 57  AIEWGFELLTSPDWFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEI 113

Query: 164 AETGPCGPCSEIFFDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQE 215
              GP GP +EIFFD+GE                E +RYIEIWN+V  QF       + E
Sbjct: 114 G-AGPSGPDTEIFFDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSE 172

Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRV 274
              LP  +IDTG GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +V
Sbjct: 173 YKELPNKNIDTGAGLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKV 232

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334
           I DH+R+ SF I DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M 
Sbjct: 233 IADHIRALSFAIGDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIME 292

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYD 392
           S YPE+++ +  IE+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLYD
Sbjct: 293 SYYPEVLEKRDFIEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYD 352

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+++ +++    G   ID   F  A++EQ+ RARA  +  GS   +    +L    
Sbjct: 353 TYGFPVELTEELAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--ETLAGIV 409

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
             ++F  YD                       T  + S +  I+   E  E    GQ   
Sbjct: 410 EESRFE-YD-----------------------TYSLESSLSVIIADNERTEAVSEGQ-AL 444

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +VF QTPFYAE GGQ+ DTG    D    +      +KA      H +     L    + 
Sbjct: 445 LVFAQTPFYAEMGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNY 504

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L I+ + R  +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ E
Sbjct: 505 TLEINKERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEE 564

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE  VN+ I   L + T   + E A   GA AL G KY   VRVV +     G +S 
Sbjct: 565 LRHIEQEVNEQIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSV 619

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGGTH++++ EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K 
Sbjct: 620 ELCGGTHLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKDIAATVKA 679

Query: 752 SQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVD 805
            Q  +   +V+ + +  R LQ  +A+ K +              +   V F++  +   D
Sbjct: 680 PQLKDAAAKVQALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVAD 739

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    EK   ++   T+D     +A ++ +  A ++  
Sbjct: 740 AGALRTFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA- 794

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG + +K  + +A VA  +
Sbjct: 795 GRGGGKPDMAMAGGSDASKIAELLAAVAEIV 825


>gi|326773292|ref|ZP_08232575.1| alanine--tRNA ligase [Actinomyces viscosus C505]
 gi|326636522|gb|EGE37425.1| alanine--tRNA ligase [Actinomyces viscosus C505]
          Length = 903

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/936 (33%), Positives = 487/936 (52%), Gaps = 74/936 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L++F  N HE+ PS SL+    P+++FT +GMVPF     G E+  +   
Sbjct: 1   MRTSEIRSRWLDYFAANEHEIRPSVSLVSPE-PSILFTVAGMVPFIPYILGTEEAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVG T RH TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+++ED+ +   W +  G+ A++I  +   D  WS  + GP G C EI 
Sbjct: 116 GYSLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230
           +D+G    P G P    +G+R++EIWNLVF +F +   +         L + +IDTG GL
Sbjct: 176 YDRGPAYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279
           ER+A ++Q+K N Y+ID    +I+A+E+++G  Y             ++ V  RV+ DH+
Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIKAAEELSGKAYGRGSAGPEAGEAYHDDVRMRVVADHV 295

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS+  LI DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL      M S+YPE
Sbjct: 296 RSALMLICDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKSSYPE 355

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK------DEILNGDVAFKLYDT 393
           L      I E    E++ F +TL  G  +LD  ++   K        +++G  AF+L+DT
Sbjct: 356 LETGWSTISEVAYGEEDAFRRTLAAGTTILDTAVASAKKEAGRSGRPLVSGKSAFELHDT 415

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-- 451
           +G P+D+  ++   +G   +D  +F   + EQ+ RARA +    +G  +   F   EK  
Sbjct: 416 YGFPIDLTLEMAAEQG-VDVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEM 474

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            G + F+GY                         +   + V  I+  G       +  +V
Sbjct: 475 GGGSTFLGYTE-----------------------SSADATVTGILVDGVPQSVVTAPAEV 511

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           EVV D+TPF+AE GGQL D G   + DG  +++ DVQ   +G+ VH   +  G +     
Sbjct: 512 EVVLDRTPFWAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVHRGTLTEGTIAVGEK 571

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
               ID   R  ++  H++TH++H AL  I+  + +Q GS  +P  +RFD  H   + S 
Sbjct: 572 AFAQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALASD 631

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           ++  IE+ VN+ ++++L V   +M+ + A A+GA AL G KY  +VRVVS+    GG  S
Sbjct: 632 QISGIEERVNNRLSEDLAVTDEVMDIDAARAAGAMALFGEKYGKQVRVVSI----GGDWS 687

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LC GTHV STG I  + ++ ESSI +G+RRI+A+ G+ A  +   +   +  L++ + 
Sbjct: 688 KELCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGAYGYQAKEHALVSQLSTMVG 747

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV- 804
               ++  RVE +    +  +   A  +        +       ++ +V   S  +  V 
Sbjct: 748 GRPEDLPERVESLMTRLKDAEKRLAAAEQAALSARTAGIVSDAVRLGEVRLASADLGTVG 807

Query: 805 DSKELKSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
            +  ++S++   + ++      ++ +  +   +   V+            A  L R +A+
Sbjct: 808 SADAVRSLVLDTRSRLGDAEPAVVAVGAVVGSRPVVVVATNAGARDQGIRAGALVRTAAQ 867

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           VLGGGG GG+  +AQ GG N    D+A+  VA  ++
Sbjct: 868 VLGGGG-GGKDDLAQGGGQNPQALDEALRAVAEQIQ 902


>gi|169603389|ref|XP_001795116.1| hypothetical protein SNOG_04704 [Phaeosphaeria nodorum SN15]
 gi|160706385|gb|EAT88464.2| hypothetical protein SNOG_04704 [Phaeosphaeria nodorum SN15]
          Length = 960

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/977 (31%), Positives = 461/977 (47%), Gaps = 113/977 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
              +R TFL++F+KNGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       
Sbjct: 12  AKKVRQTFLDYFKKNGHSFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFASL 71

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI   W+L+TK +
Sbjct: 72  KRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELMTKVY 131

Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +D  RLY+T ++       D EA +LWK  +G+  D I+     DNFW M + GPCGPC
Sbjct: 132 GIDPNRLYVTYFEGADGLEPDLEAKELWKS-AGVPEDHILPGDMKDNFWEMGDQGPCGPC 190

Query: 173 SEIFFDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SE+ +D  E + G         +++    IEIWN VFMQ+ ++  +    LP   IDTGM
Sbjct: 191 SEVHYDLREPVDGKYRNASDLVNKDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTGM 250

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHL 279
           G ER+ +VLQ+K +NYD D+F  L +  + +          G +        +RV+ DH 
Sbjct: 251 GFERLVSVLQKKMSNYDTDVFTPLFKRIQDITGARPYNGKFGKEDPDGIDTAYRVVADHT 310

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAY 337
           R  SF IADG +P N GRGYV+RR++RR   YAR     E       ++P L  +MG  +
Sbjct: 311 RMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARNYFGVEIGNFFSKIIPTLVEQMGDMF 370

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395
           PE+ + +  I E L  E++ F K+LDRG  +    ++   K     L GD  ++LYDT+G
Sbjct: 371 PEIKKKQQDIIEILDEEEKAFAKSLDRGETIFKKYVAKAQKAGSNDLPGDDVWRLYDTYG 430

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ + +    GL   D           + +AR  S G  +     + F + +     
Sbjct: 431 FPVDLTKLMAEENGLNINDKEVEEA-----QEKAREASKGDKAAAGVVVKFDVHDL---- 481

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVE 512
                     +     D               +++ +KAI    + ++   E   G++  
Sbjct: 482 ----------AALDSMDDVPKTDDSFKYGRENITTTIKAIYHNKKFLKSTSEVPEGEQFG 531

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D+T FYAE GGQ  DTG  + DG      D  +   G  +H   ++ G L+    ++
Sbjct: 532 VLLDKTNFYAEQGGQEYDTGRLLIDGEAEISVDNVQVYAGYVLHTGYLKYGELKVGSEVI 591

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L++AL   LG+ V Q GS + P+ LRFD +H   +T AEL
Sbjct: 592 AEFDELRRNPIRNNHTGTHVLNYALRETLGNEVDQKGSLVAPEKLRFDFSHKAGLTDAEL 651

Query: 633 KSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           K +ED  +D I QN  V  + +   +     G  A+ G  Y D VRVVSV          
Sbjct: 652 KKVEDISSDYIRQNAEVYAKDVPLAQAKEIRGLRAVFGETYPDPVRVVSVGVPIEDLLAD 711

Query: 683 --YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---- 736
              E     S   CGGTHV  TG+I  L I+ ES I  GIRR EA   QR  +       
Sbjct: 712 VKNEKWDKLSIEFCGGTHVLKTGDIKELVILEESGIAKGIRRQEAYNVQRIGNEFAERID 771

Query: 737 ---------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                     ++ + K L   L       + +  +     +I +     Q   AK   + 
Sbjct: 772 LFGKMKFSPEKEAEAKKLQLELNQLSISAIKKTELRDAFAKIQKSILDEQKAFAKADNKR 831

Query: 782 NVEDLSCHKIADVN-FMSHIIS---EVDSKELKSVMDAL---QKKIQSGIIMLVGIS-KE 833
            +++++     +   F+   +     V+ K +   + A+   +  ++   + L   S +E
Sbjct: 832 VLDEVTNFFKDESKTFLVKKVEWSSNVN-KAISEAIKAISGPKSALKDRSLYLFSASPEE 890

Query: 834 KKASVLIVVTED-LLDRFNAVDLARLSAKVLG-----------GGGGGGRPHMAQSGGPN 881
            K      V E       +    A     ++G                     A   G N
Sbjct: 891 GKVVHGCYVAEQHKAAGADGPKWASFVTPIIGGKAGGKPGAPT----------AIGQGTN 940

Query: 882 GNKADQAIAGVASFLKK 898
            +K D  +A    F+++
Sbjct: 941 ADKVDDGVAEATKFIEQ 957


>gi|115432192|gb|ABI97370.1| AlaRS [Bos taurus]
          Length = 869

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/853 (34%), Positives = 429/853 (50%), Gaps = 68/853 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAGEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSRILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGRVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F++    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTALIAEEKGL-VVDMDGFDE----ERKLAQLKSQGKGAGGEDLIMLDIYAIEELRE-KG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                 +     + V A+ +    VEEA +GQ+  VV D+T 
Sbjct: 478 LEATDDSPK----YSYHSDSSGTYVFESAVATVMALRRDRMFVEEASTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ  D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQTYDEGYLVKVDDSSEDKTEFTVKNTQVRGGYVLHIGTLYGSLKVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N++I    PV T   +        G  A+    Y D VRVVS+             
Sbjct: 653 EEIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKK 772

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
           SL          V  +V+      + +Q   A     L    +   +  +          
Sbjct: 773 SLCV--------VEAKVKAQAAPNKDVQREIADLGEALATAIIPQWQKDEFR-------- 816

Query: 804 VDSKELKSVMDAL 816
            + K LK VMD L
Sbjct: 817 ENLKSLKKVMDDL 829


>gi|115610688|ref|XP_797369.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
            (AlaRS) [Strongylocentrotus purpuratus]
 gi|115964130|ref|XP_001180526.1| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
            (AlaRS) [Strongylocentrotus purpuratus]
          Length = 1041

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/968 (29%), Positives = 453/968 (46%), Gaps = 87/968 (8%)

Query: 4    VSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
             S +R  FL+ FQ  N H  +PSSS+IP  DPTL+FTN+GM  FK+IF G   P      
Sbjct: 78   ASQVRKKFLDHFQGLNDHVFVPSSSVIPYGDPTLLFTNAGMNQFKDIFQGTIHPDMVQNC 137

Query: 58   YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            Y+ V   QKC+R GGKHNDLD+VG+   HHTFFEMLGN+SFG +FK+ A  +A DLLT  
Sbjct: 138  YRRVVNSQKCIRVGGKHNDLDDVGKDTTHHTFFEMLGNWSFGDFFKKEACTMALDLLTSV 197

Query: 118  FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + L    LY T +          DE   ++W  + G+  D+++     DNFW M   GPC
Sbjct: 198  YGLPLENLYFTYFKGNSELQLGADEATRQIWLDL-GVPEDRVLPFGMADNFWEMGAVGPC 256

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPC+EI FD+           +      +EIWNLVFMQF +        LPK  +DTGMG
Sbjct: 257  GPCTEIHFDRHGN-RNASHLVNLGDPDVLEIWNLVFMQFYRNEAGSLHDLPKHHVDTGMG 315

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHLR 280
            LER+ ++LQ   ++YD DLF+ LI+  E+   +         K + +    +R + DH R
Sbjct: 316  LERLVSILQGVPSSYDTDLFQPLIKRLEETCPVRPYQGLLGEKDQDHIDTAYRAVADHAR 375

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
              +  IADG  P ++ RGYV++R++RRA+ YA   L      +  L+  +   +G+ YPE
Sbjct: 376  MLTVAIADGCRPDSQKRGYVIKRVIRRAVRYATEKLQAPPGALGSLVHLVVISLGNTYPE 435

Query: 340  LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
            L +  + I + + +E+E+F  TL +G   L   ++ L    +L GD+A+K+YD +G PLD
Sbjct: 436  LEEDPVYIADVINNEEEQFLTTLKKGEKYLKKAITELSSQTVLPGDIAWKMYDAYGFPLD 495

Query: 400  IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
            +   I    GL G+DI  F ++  E +       +         I     +         
Sbjct: 496  LTTLIADENGL-GVDIEGFEKSRLESKEITSRGGIKNQQN-LSNIKLETTDISHL----- 548

Query: 460  YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            ++L                +        + + + A+      VE A SG++  ++ D+T 
Sbjct: 549  HELSVKDTDDSYKYNYQHHRRGKYTFPRIHAHILALKTPKGFVECAASGEECAIILDRTT 608

Query: 520  FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQ 578
            FYAE GGQ  D G  +       +  V        +V H       +     + L ++ +
Sbjct: 609  FYAEQGGQQWDEGSFVSADDEELMFSVYDVQSYGGYVLHLGTTAETVSIGDHVTLYVNEE 668

Query: 579  NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
             R +L  NH+ TH+L+ AL  +LG H+ Q GS + PD  RFD    K I+  +L+ I   
Sbjct: 669  RREKLMRNHTGTHILNFALRQVLG-HIEQKGSSVAPDRFRFDFNAEKSISDRQLQQISSI 727

Query: 639  VNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG---------- 687
             N++I+ +LPV    I  ++     G   + G  Y D V VV + ++DG           
Sbjct: 728  ANNLISNSLPVHQESIPLQKALTIEGLRTMTGETYPDPVTVVCIGHQDGQLNGDMTKLGM 787

Query: 688  VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----------RSHLMG 737
              S  LCGGTHV +TG I  L IVSE  +  G+RR+  +T                 L  
Sbjct: 788  ETSLELCGGTHVKNTGHIRRLVIVSEKLVSKGVRRLTVVTSNDVMLADYTSNKFLQRLSQ 847

Query: 738  QDEKLKSLASFLK--------VSQGNVVG-----------------RVEEIWEEYRKLQL 772
             + ++ ++++            S  ++V                  RV ++  + +K   
Sbjct: 848  LETEVYNVSTSNNPEMRDDVIASLESLVEDLEGAHIDLWKKREMNRRVADMQNKLKKADK 907

Query: 773  IHAKRKLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            ++ K  ++   + L      K ++V  +      +D+K L  V  +L+ +  S  +ML+ 
Sbjct: 908  LNKKSVIKQVAKRLHEEFREKKSEVCLVGVTGDSIDNKVLLKVQQSLEDEFGSTPLMLLS 967

Query: 830  ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              KE KA  +  V ++L+ R  +A          +  G G G    A+  G   +  ++ 
Sbjct: 968  TDKE-KAYCICRVPQELVSRGLHASQWMDSVMGEME-GKGFGSETFARGRGLAPSSLEEC 1025

Query: 889  IAGVASFL 896
                 S++
Sbjct: 1026 AKKARSYV 1033


>gi|302506663|ref|XP_003015288.1| hypothetical protein ARB_06411 [Arthroderma benhamiae CBS 112371]
 gi|291178860|gb|EFE34648.1| hypothetical protein ARB_06411 [Arthroderma benhamiae CBS 112371]
          Length = 954

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/962 (30%), Positives = 454/962 (47%), Gaps = 103/962 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK         DLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQK---------DLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 133

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA  +W+   G+  D I+     DNFW M + GPCGPCS
Sbjct: 134 PDRLYVTYFEGNEAAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 192

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+
Sbjct: 193 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 251

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L  A + +TG +                 +RV+ DHLR+ +F
Sbjct: 252 VSILQNKSSNYDTDVFTPLFNAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTF 311

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ +
Sbjct: 312 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKR 371

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D+
Sbjct: 372 KQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 431

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L   D           R +A+  S G     ++ +  ++            
Sbjct: 432 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKTASDLLKLTVH----------- 475

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   ++++               + + +KAI    E+++      + +++ ++ D+
Sbjct: 476 ----TLSTLEKNGVPKTDDDAKFGKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 531

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  + DG         +   G  +H   ++ G      S++   D 
Sbjct: 532 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 591

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   I+ ++L+ IE 
Sbjct: 592 LRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEA 651

Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V    +        +G  A+ G  Y D VRVVSV               
Sbjct: 652 KSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 711

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A              
Sbjct: 712 WEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRVAREFGERL 771

Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780
                      +D ++KSL   L     + V + +      +I ++    Q    K +++
Sbjct: 772 NRFEKMPAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVK 831

Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             ++ +S          + +  +    + K +   ++ ++ K+    + +       K +
Sbjct: 832 TAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAADA-SKVA 890

Query: 838 VLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               VT DL     +A + A   + ++ GG  GG+  +A   G   NK D+A+     +L
Sbjct: 891 HGCYVTPDLTTKGASANEWASAVSSIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYL 949

Query: 897 KK 898
           +K
Sbjct: 950 EK 951


>gi|296454023|ref|YP_003661166.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183454|gb|ADH00336.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 871

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/905 (34%), Positives = 479/905 (52%), Gaps = 64/905 (7%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           +PS+SLI  N PT +FT +GMVPF     G++ P  + +T+ QKCVR      D+D VG+
Sbjct: 1   MPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRMTSNQKCVRTL----DIDEVGK 55

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAF 137
           T RH TFF+MLGNFS G YFKE AI  AW+LLT       +  D  +L++T + +DEEA 
Sbjct: 56  TTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQSEGGYGFDPEKLWVTTFTDDEEAR 115

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197
            +WK   G   + +      DNFW+    GP GPCSEI+ D+G    G   G + +  R+
Sbjct: 116 SIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVDRGPEY-GRDGGPAADETRF 173

Query: 198 IEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           IEIW+LVF  +E  N + +        L + +IDTG GLER+A ++Q K N Y+ D    
Sbjct: 174 IEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGLERLAYLMQGKQNIYETDEVFP 233

Query: 252 LIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           +I+A+E+++G KY  +    V  RV+ DH+RS+  +++DG+ P+N GRGYVLRR++RR +
Sbjct: 234 VIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSDGVRPSNVGRGYVLRRLLRRTV 293

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
              R+LG T+P++  LLP     M ++YPEL      + E    E++ F +TL+ G+ +L
Sbjct: 294 QAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVSEAAYGEEDAFRRTLENGIEIL 353

Query: 370 DGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           D  +    K  D +++G  AF L+DT+G P+++  ++   +G+  +D   F + + EQ+S
Sbjct: 354 DVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAADQGVK-VDEAKFRELMAEQKS 412

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
           RARA +L         ++   K+       F+GY  +                       
Sbjct: 413 RARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM----------------------- 449

Query: 487 GVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQIT 544
              + V  I+Q+G+  V        VEV+ D+TPFYAEAGGQL D G  + D    L++ 
Sbjct: 450 SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGGQLADQGEILSDDGAVLEVD 509

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           DVQK  + + VH   +  G L     +   ID   R  ++ +H+ATH++H AL   LG  
Sbjct: 510 DVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIARSHTATHMVHKALREELGPQ 569

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
            +Q GS   P+ LRFD   SK    + + ++E+ VND +  NL V T+ M  +DAIA GA
Sbjct: 570 ATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRDNLAVTTKEMKFDDAIALGA 629

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             L G KY D VRVVS+        S  LCGGTHV   G+I ++ I+SE+SI +G+RR++
Sbjct: 630 MHLFGEKYGDIVRVVSIGE---DGWSRELCGGTHVDHVGKIGMVNILSEASIGSGVRRVD 686

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQL 781
           A+ GQ A      +   +  L+  L      +  RV  +  + ++     A   + +L  
Sbjct: 687 AVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLAKLKESDRRLASMYESQLAA 746

Query: 782 NVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQKKIQSG---IIMLVGISKEK 834
           +V  L          +   +  V        L+  +  ++ ++      ++ L G++++ 
Sbjct: 747 SVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLDVRAQLGEDAPVVVALAGVNEDD 806

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K  V +   E        A DL R +AKVLGGGG GG+P  AQ GG + +K  +A+  + 
Sbjct: 807 KPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGG-GGKPDFAQGGGVDASKIGEALEALK 865

Query: 894 SFLKK 898
              +K
Sbjct: 866 HEAQK 870


>gi|315046056|ref|XP_003172403.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311342789|gb|EFR01992.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 970

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/930 (30%), Positives = 447/930 (48%), Gaps = 93/930 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA  +W+   G+  D I+     DNFW M + GPCGPCS
Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 201

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+
Sbjct: 202 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 260

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L  A + +TG +    N            +RV+ DHLR+ +F
Sbjct: 261 VSILQNKSSNYDTDVFSPLFAAIQNITGARPYTGNFGAQDVDGIDTAYRVVADHLRTLTF 320

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ +
Sbjct: 321 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYMQVEIGSFFSKLVPALVEQMGDMFPEIKR 380

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D+
Sbjct: 381 KQNDVMEILDEEEVSFAKTLDRGERQFETYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 440

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L   D           R +A+  S G     ++ +  ++            
Sbjct: 441 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKAASDLLKLTVH----------- 484

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   ++++               + + +KAI    E+++      + +++ ++ D+
Sbjct: 485 ----TLSTLEKNGVPKTNDDAKFGKGNIVANIKAICHGKEVIDSTKDIPADEQIGIILDK 540

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  + DG         +   G  +H   ++ G      S++   D 
Sbjct: 541 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 600

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   I+ ++L+ IE 
Sbjct: 601 LRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIES 660

Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V    +        +G  A+ G  Y D VRVVSV               
Sbjct: 661 MSTDYIRQNCAVYSQEVPLSTAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 720

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A              
Sbjct: 721 WEAVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRVAREFGERL 780

Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780
                      +D ++KSL   L     + V + +      +I ++    Q    K +++
Sbjct: 781 NRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVK 840

Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             ++ +S          + +  +    + K +   +  ++ K+    + +       K +
Sbjct: 841 TAIDTISTYFEENKDSPSLVIKLPISANQKAISESLTHVKTKLSGKALYVFAAD-GSKVA 899

Query: 838 VLIVVTEDL-LDRFNAVDLARLSAKVLGGG 866
               VT DL     +A + A   + ++GG 
Sbjct: 900 HGCYVTPDLTTKGASANEWASAVSSIVGGK 929


>gi|294790797|ref|ZP_06755955.1| alanine--tRNA ligase [Scardovia inopinata F0304]
 gi|294458694|gb|EFG27047.1| alanine--tRNA ligase [Scardovia inopinata F0304]
          Length = 900

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/932 (34%), Positives = 488/932 (52%), Gaps = 71/932 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   F+ +F+K+ H +LPS+SLI  N PT +FT +GMVPF     G++ P  + V
Sbjct: 1   MRTSEIAKQFVTYFEKHDHLVLPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-----K 116
           T+ QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AI  AW+LLT      
Sbjct: 60  TSNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKAEAIHYAWELLTLPQDQG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  ++ +L++T Y +DEEA  LWK   G+  + +  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFNKDKLWVTTYTDDEEARSLWKNE-GMDPEHMQVLGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  FE  N + +  +         +IDTGMGL
Sbjct: 175 VDRGPEY-GSDGGPIADENRYIEIWDLVFENFEVDNVKSKTDMHIVGELANKNIDTGMGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+ +E+++G+ Y  + +N V  RV+ DH+RS+  ++ D
Sbjct: 234 ERVAYLLQGKENIYETDEVFPVIEEAERLSGLTYGEDPHNDVRFRVVADHVRSALMIMGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRR++RR++   ++LG    +  HLLP    +M  +YPEL  +   + 
Sbjct: 294 GVRPSNEGRGYVLRRLIRRSIRAMKMLGVDHEVFPHLLPVSKAQMRLSYPELDDSFDEVC 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--------KDEILNGDVAFKLYDTHGLPLDI 400
           ET   E+  F +TLD+G  +LD  +S               ++G  AF L+DT+G P+++
Sbjct: 354 ETAYGEEAAFRRTLDQGSSILDLAISKAKDGALKAGSDSPRVSGKDAFALHDTYGFPIEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIG 459
             +I   +G   +D  +F   + +Q+ RARA +L         ++  +++      +F G
Sbjct: 414 TTEIAREKG-VEVDQNAFRDLMAQQKRRARADALRKRHNVDLSVYDDVRKALKEPIEFTG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQT 518
           Y                               V AI+ +    VE       VE+V D+T
Sbjct: 473 YKEYSSR-----------------------GKVLAIIDEELGSVESVTGPATVELVLDRT 509

Query: 519 PFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           PFYAE GGQ+ D G    D    L + DVQK  + ++VHH ++  G +     +   ID 
Sbjct: 510 PFYAEQGGQMADYGQISSDKGASLDVDDVQKPVKDLYVHHCLLTEGTISLGDEVSSAIDV 569

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           Q R  ++  H+ATH+LH  +  +LG   +Q+GS + PD LRFD   SK +TS++L  IE 
Sbjct: 570 QRRIGMTHAHTATHVLHKVVREVLGQKATQSGSVVDPDRLRFDFHWSKALTSSQLHQIES 629

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  I  +L V  + M    A++ GA  L G KY D VRVV++        S  LCGGT
Sbjct: 630 RVNARIRDDLEVTWKNMPINQALSLGAMHLFGDKYGDVVRVVTIGS---DGWSRELCGGT 686

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H + TG I    ++SESS+  G+RRIEA+ G ++      Q   +  LAS L      + 
Sbjct: 687 HAARTGTIGSFTLLSESSVGTGVRRIEALVGDKSYEFNHSQHSLINKLASDLNSRPDELE 746

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELK 810
            R+  + +  ++     A+   ++++  +  L     A  + +      V      + L+
Sbjct: 747 ERLTALEDRLKESDRKLAQIYEKQIEDMIPQLVSQTQASADPVWVASKNVGVFGSVEALR 806

Query: 811 SVMDALQKKIQS---GIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGG 865
                 + ++      ++ LVG+S +    ++ V T      +   A DLAR ++K+LGG
Sbjct: 807 KAATDTRSRLGDDKPAVVALVGVSSDSGKPIICVATNAPARKNGIKAGDLARAASKILGG 866

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GG GG+P  AQ GG + ++A+ A+  +   ++
Sbjct: 867 GG-GGKPDFAQGGGQDASQAEAALDEIKRQVE 897


>gi|224047577|ref|XP_002187191.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial [Taeniopygia
           guttata]
          Length = 986

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/964 (29%), Positives = 438/964 (45%), Gaps = 81/964 (8%)

Query: 3   NVSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           +   IR  FL FF++ +GH  LPS+ + P  DP L+F N+GM  FK IF G   P     
Sbjct: 32  SAGQIRAAFLRFFEERHGHRRLPSAPVRPRGDPRLLFVNAGMNQFKPIFLGTVHPRSELA 91

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKCVRAGGKHNDL++VGR   HHTFFEMLGN+SFG YFKE A  +AW+LLT+
Sbjct: 92  QYRRVVNSQKCVRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYFKEEACSMAWELLTE 151

Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            +++ + RLY+T +          DEE   +W    G+ A  ++     DNFW M +TGP
Sbjct: 152 VYEIPRDRLYVTYFGGDPSLGLSADEECRDVWL-HLGVPASHVLPFPLKDNFWEMGDTGP 210

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D            ++     +EIWNLVFMQ+ ++ +     LP+  +DTGM
Sbjct: 211 CGPCTEIHYDHVGGGRNAAALVNQGSPDVVEIWNLVFMQYSREVEGNLLPLPQHHVDTGM 270

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHL 279
           GLER+ TVLQ K ++YD DLF  ++ A  +V               G   + +RV+ DH+
Sbjct: 271 GLERLVTVLQNKRSSYDTDLFTPILDAIHKVCRAPRYQGLVGNADVGRVNMAYRVVADHV 330

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338
           R+    I DGI P   G   VLRRI+RRA+ +    L     L+  L+P +   +G AYP
Sbjct: 331 RTLCVCITDGIYPGFSGAELVLRRILRRAVRFCSEVLQAPPGLLASLVPTVVEVLGDAYP 390

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL +    I++ L   +  F  +L+RG  +++  +  +        +VA+ LY + G PL
Sbjct: 391 ELTRNANQIKDILNENEAAFLSSLERGRRIIERTVQQMEPSTNFPAEVAWSLYGSLGFPL 450

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK--IWFSLKEKYGATQ 456
           D++  +L  +G   +D  +FN+   E   R         +GT        SL    G++ 
Sbjct: 451 DLIDLMLEEKG-ISLDSAAFNKLALEDAKRKAGGPQAGQTGTANTRLDVHSLAWLQGSSV 509

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                    +                   +   + V  + +   + +E  +GQ+  V+ D
Sbjct: 510 --------PTTDDSPKYTYTLGLHGQYEFSPCQATVLMLYKDQSLHKEVGAGQRCGVILD 561

Query: 517 QTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ  D G  I      +          G +V H +     LR    + L +
Sbjct: 562 RTNFYAEQGGQDSDQGYMIRLGQQDVLFPVESVHLCGGYVIHEVTAVETLRAGDQVQLFV 621

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R     NH+ATHLL  AL  +LG    Q GS +T   LRFD      +T  +L+ +
Sbjct: 622 DEAQRLACMRNHTATHLLSFALRRVLGDSTEQRGSHVTAQQLRFDFDTKGHVTVEQLQQV 681

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YED 685
           E  V D+I +N  V    +    A        +  +Y D VR+VS+            + 
Sbjct: 682 EQVVRDLIQKNEVVHMAEVPLTLARRVQGLRAVDEEYPDPVRIVSLGVPVENVLTCDSKA 741

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL---MGQDEKL 742
               S  LC GTH+  TG +  L I+SE  +  GI R+ A+TG RA+           ++
Sbjct: 742 AMQTSVELCCGTHLLQTGSVEDLAIISERQLVKGISRVIAVTGGRAKEAREVGQCLAVEV 801

Query: 743 KSLASFLKVSQGNVVG------RVEEIWE----------EYRKLQLIHAKRK--LQLNVE 784
            S++  +K    ++         V ++ +          + ++LQ I    +      ++
Sbjct: 802 DSVSLRMKQRITSIPEMQNLSKEVGQLTKVVASTAMPQWQRKELQTILKALQRTANTAIK 861

Query: 785 DLSCHKIADVNFMS--------HIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKE 833
            L   +   V  +          II  + +     L  V++ L  K     ++L+     
Sbjct: 862 KLELQQAEKVAQILLAKYCNQPVIIDTIPADSLSILMKVVNQLCDKSPGTSVLLLSPQTS 921

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            +      V++  L  F+A D A      +  G  GG P +A+  G N      A+    
Sbjct: 922 GEVLCACQVSKSCLPGFSAADWAMAVCTQME-GKAGGSPIVAKGSG-NAKGMQGALTTAL 979

Query: 894 SFLK 897
            F +
Sbjct: 980 EFAQ 983


>gi|330802829|ref|XP_003289415.1| hypothetical protein DICPUDRAFT_153802 [Dictyostelium purpureum]
 gi|325080498|gb|EGC34051.1| hypothetical protein DICPUDRAFT_153802 [Dictyostelium purpureum]
          Length = 925

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/915 (37%), Positives = 479/915 (52%), Gaps = 88/915 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL +F+ N H+ LPSSSLIP ND TL+FTN+GMV FKN FTG E+  Y+ VT
Sbjct: 34  TTKEIREKFLNYFETNKHKRLPSSSLIPHNDSTLLFTNAGMVQFKNQFTGLEESKYKLVT 93

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDL 120
           T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFGGY  FK  +IQ AW+LLTK+F L
Sbjct: 94  TSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGGYNHFKRDSIQHAWNLLTKDFGL 153

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQ 179
            + RL I+V + DEE+  +W+   GLS DKI+ +   DNFWSM +  GPCGPCSEIF+D 
Sbjct: 154 PKERLAISVLEGDEESASIWRDQIGLSNDKIMYLGKKDNFWSMGDGPGPCGPCSEIFWDH 213

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE       G   +GER++EIWNLVFMQ+ +  K E   L    +DTGMGLERMATVLQ 
Sbjct: 214 GE-------GKEVDGERFLEIWNLVFMQYNRNEKGELEKLAMPCVDTGMGLERMATVLQG 266

Query: 240 KTNNYDIDLFKHLIQASEQVTGMK----------YEGNNIVNHRVIVDHLRSSSFLIADG 289
           KT NYDIDLF++LI + ++   +                 V +RVI+DHLRS SFLI+DG
Sbjct: 267 KTTNYDIDLFQNLINSFKEQVMIDPTKASHIIKQDPQRVEVAYRVIIDHLRSISFLISDG 326

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P N GRGYVLR+I+RRA+ Y +LLG+  P +  L   L  EM   +P+L +    I+ 
Sbjct: 327 VIPFNIGRGYVLRKIIRRALSYGKLLGFEGPFLYQLFSILEHEMADTFPQLRERSNEIKN 386

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L +E+  F K + RG+  L+ ++        LN D  F LY+T+GLPL+ + ++   + 
Sbjct: 387 VLLNEETTFYKAIKRGIPYLEEMIDR----GQLNEDNLFLLYNTYGLPLE-ISEVKAKQN 441

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE----KIWFSLKEKYGATQFIGYDLLRG 465
              ID+      ++E R+++RA      S              K    + +FIGY+    
Sbjct: 442 NIEIDMEKVANLVDETRNQSRATWKSNESQPNTNNPLDEVKKWKNDNISPKFIGYET--- 498

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T    S++                  V + FD++PFY ++G
Sbjct: 499 -------------------TLNDESLITKSFFDN-------DNHLVYLSFDKSPFYGKSG 532

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-----------TEMSLVLT 574
           GQ+GDTG             +            +V+    +               +   
Sbjct: 533 GQIGDTGIIKSKNSNQIYNVIDTIKPYDNSLVLVVKWDPTKQLITNVQDDLAEGSIVSSQ 592

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ++   R+Q +I+HSATHLLH AL  I+G  V Q GS + P+ LRFD TH K ++  E+  
Sbjct: 593 VEKSVRKQTAIHHSATHLLHAALREIIGKSVVQAGSFVGPNILRFDFTHGKKLSVKEIDQ 652

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  VND+I Q++ + T  M   +A    A  L   KY D VRVVS+        S  LC
Sbjct: 653 IEKWVNDVIDQDIYLETHEMPYSEASKGDAIQLFSEKYTDLVRVVSIPG-----FSKELC 707

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV  + +I    I+SESS+ AG RRIEAI G+ A        + ++S++  + V   
Sbjct: 708 GGTHVERSSDIHHFKIISESSVAAGTRRIEAIAGKVATEWFKSHYKMVQSISDNINVPLT 767

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK--IADV--------NFMSHIISEV 804
           N    +E +    ++ +    +  L++ +   S H   I  V            H++   
Sbjct: 768 NFQPSIERLVSSNKQKEKEIEELNLKIALLSASSHSGHICGVECGSGIDHPLSIHVVDCD 827

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVL 863
           DSK L  +  +  K   + I   + +SK+ KA   +   ++    +  A  + +     L
Sbjct: 828 DSKILNVIAGSFSKSNPNHI--NITVSKKGKAICNLGANQEPNSLKTTADTIVKKLLSSL 885

Query: 864 G-GGGGGGRPHMAQS 877
             GG GGG   +A +
Sbjct: 886 NCGGKGGGSKILANA 900


>gi|316967113|gb|EFV51596.1| putative alanine--tRNA ligase [Trichinella spiralis]
          Length = 962

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/979 (29%), Positives = 443/979 (45%), Gaps = 116/979 (11%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
             ++IR TF+ +F +K  H+ + SSS+IP  DP+L+FTN+GM  FK IF G   P     
Sbjct: 6   TANAIRQTFINYFTEKRNHQYVHSSSVIPKGDPSLLFTNAGMNQFKPIFLGTADPNSQMA 65

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            ++ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LTK
Sbjct: 66  SWKRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKDICAWAWEVLTK 125

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           EF + + +LY+T +          D E  ++W    GL +++++     DNFW M + GP
Sbjct: 126 EFKIPKEQLYVTYFGGSEKCRLQPDVECRQIWLD-MGLPSERVLPFGMKDNFWEMGDIGP 184

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           +++    +EIWNLVF+ + +        LPK  ID G+
Sbjct: 185 CGPCSEIHYDRIGN-RNAANLINKDDPDVLEIWNLVFITYNRDKDGSLHPLPKRHIDCGL 243

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           G ER+ +V+Q K +NYD DLF  +     +   ++               + +RV+ DH+
Sbjct: 244 GFERLVSVIQGKKSNYDTDLFVPIFNRIAETAKVRPYMGKVGEEDEQQIDMAYRVVADHI 303

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEM---GS 335
           R+ +  ++DG  P N GRGYVLRRI+RR + YA   L        +L+P +   +   G 
Sbjct: 304 RTLTVALSDGGRPDNCGRGYVLRRILRRGVRYATEKLNAPSGFFANLVPVVVETLVEDGE 363

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
            +PEL +    + E +  E+  F KTL RG  +L   +    KD+++ G VA++LY ++G
Sbjct: 364 TFPELKEDPNSVMEIINEEESLFLKTLSRGSRVLRQEIEKASKDKLIPGVVAWRLYASYG 423

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ Q +    G             EE R +A+  S    S   + + F++       
Sbjct: 424 FPVDLTQLMAEESGYKVNMEE-----YEECRQQAQMSSSSKFSQLNDVVDFNINA----- 473

Query: 456 QFIGY----DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
             + Y     +       K   ++          + V   V A+ + GE V E  SG   
Sbjct: 474 --VNYLLNGKVPLTDDKPKYAYRLTENGDDDYEFDEVKCEVLALRKNGEFVSEVCSGDSC 531

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            ++ D+T FYAE+GGQ+ D G   GD    ++ +VQ +   I   H     G +     L
Sbjct: 532 CLICDKTAFYAESGGQIYDEGSMEGDKSEFRVRNVQARGGYIV--HFGEVMGTITRGSKL 589

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D + R Q+  NH+ATHLL+ AL  +LG  V Q GS +  D LRFD T   P+T  +
Sbjct: 590 FQNVDQKRRVQVMKNHTATHLLNFALREVLGQ-VEQKGSLVLTDRLRFDFTCKAPLTVEQ 648

Query: 632 LKSIEDNV-NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------- 682
           L  IE  V N + +     +  +        +G  +     Y D VRVVSV         
Sbjct: 649 LMKIEQIVANIVNSDVEIYMQEVPLGVAKTIAGLRSTADETYPDPVRVVSVGTPVDALLK 708

Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                   + S   CGGTH+  TG +    I SE ++  GIRRI A+T   A   +   +
Sbjct: 709 DPDGPGAKLASVEFCGGTHLLRTGHLGDFVIASEEAVARGIRRIVALTCHEAEQAVQKLE 768

Query: 740 EKLKS----------------------------------LASFLKVSQ------GNVVGR 759
             +                                    L   +K SQ       ++V +
Sbjct: 769 YFVNKVEEVIDLIRSSVLSGELDYSFLNRKISGCLEVGWLCVEMKASQIPAWRREHLVRK 828

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
           + ++       +     + +Q+  ++    +I D   + H       +K L + +  L+ 
Sbjct: 829 LAQVKATLDDFEKGERMKFVQMITDEAKNLQIPDDGIVVHEFPPNATAKALDTALKQLKC 888

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +     I+    SK K+   +            A          + GG GGG+   AQ+ 
Sbjct: 889 RAG---IVFSQDSKNKRVECV-------DKGLTAKAWVDRLC-CVAGGYGGGKETTAQAS 937

Query: 879 ---GPNGNKAD-QAIAGVA 893
              G   +K   +A     
Sbjct: 938 LGTGLPVDKIKTEAEKFAK 956


>gi|296420542|ref|XP_002839828.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636034|emb|CAZ84019.1| unnamed protein product [Tuber melanosporum]
          Length = 959

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/964 (30%), Positives = 459/964 (47%), Gaps = 94/964 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TF+++F+ NGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 15  VRKTFIDYFKNNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPSSDFASLKRA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ A++ +W+LLT+ + LD
Sbjct: 75  ANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAVEYSWELLTEIYGLD 134

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D E  +LW+   G++ + I+     DNFW M + GPCGPCS
Sbjct: 135 PDRLYVTYFEGNKERGLEPDLETQELWRA-VGVADNHILPGNMKDNFWEMGDQGPCGPCS 193

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E+ +D            + +    IEIWN VF+Q+ ++       LP   +DTGMG ER+
Sbjct: 194 EVHYDHI-GGRNASHLVNMDDPNVIEIWNNVFIQYNREPDHSLRSLPNKHVDTGMGFERL 252

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            +VLQ+K++NYD D+F  L Q  +++T  +  G              +RVI DH+R+ +F
Sbjct: 253 VSVLQDKSSNYDTDVFSPLFQKIQEITKARPYGGKFGAEDVDGIDTAYRVIADHVRTLTF 312

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYPELIQ 342
            IADG +P NEGRGYV+RR++RR   YAR             ++P L  ++G  +PE+ +
Sbjct: 313 AIADGGVPNNEGRGYVVRRVLRRGARYARRYFQAPIGEFFSKIVPTLVLQLGDVFPEIKK 372

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDI 400
            +  ++E L  E+E F +TLDRG  + D       +    +L G   ++LYDT G P+D+
Sbjct: 373 KESDVKEILNEEEESFSRTLDRGERMFDVFSKRATEHNSKVLKGSDVWRLYDTFGFPVDL 432

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +    GL  I+   F +A  E +  ++A          +     L            
Sbjct: 433 TRIMAEENGLE-INEEEFERAKAESKEASKARKSSGDVELLKLGVHDL------------ 479

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE---VVFDQ 517
                 +  +                 ++  + AI           +  +     ++ D+
Sbjct: 480 -----GRLEQMAEVPKTDDVYKFGRGNITGHIMAIYCDKSFRSSTANISRYTQLGLILDK 534

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  + DG         +   G  +H   ++ G L     ++   D 
Sbjct: 535 TNFYAEQGGQEYDTGKILIDGEAELDVQNVQVYGGYVLHTGYIKYGTLSVGDDVICEYDE 594

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L++AL  +LG  + Q GS +  + LRFD +H   +T AEL+ IE 
Sbjct: 595 LRRWPIRNNHTGTHVLNYALREVLGDGIEQKGSLVAAEKLRFDFSHKCGVTDAELEMIEK 654

Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              + I QNL V +  +         G  A+ G  Y D VRVVSV             + 
Sbjct: 655 ISTEYIRQNLEVYSEDVPLSIAREIEGVRAVFGETYPDPVRVVSVGVPIEELTRDVKNKQ 714

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736
               S   CGGTHV  T +I  L I+ E+ I  GIRRI A+TG  A              
Sbjct: 715 WRKVSIEFCGGTHVQKTDDIKDLIILEENGIAKGIRRIVAVTGNDAGKVQKIASQFEERI 774

Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIHAK 776
                      ++ ++KS+ + L     + V +V          +++ ++ +  Q    K
Sbjct: 775 NALGKLPAGPRKEAEIKSVQADLNSLVISAVKKVQLKDKFGKIHKQLLDDQKAKQKAELK 834

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE--K 834
           + +++  E           F+S +    +SK L   +  +Q K +   + L     +   
Sbjct: 835 KAVEIVTEHFK-QNPDSPYFVSKLPISANSKALSDAIKHVQTKAKDKTVYLFATDDDAEG 893

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K      V E++  + +A DLA   ++++GG  GG      Q  G   +K  +A+   A 
Sbjct: 894 KVIHGCYVAENVGKQLSAKDLADSISQIVGGKAGGKGATS-QGIGNKVDKVGEAVDAAAK 952

Query: 895 FLKK 898
            L++
Sbjct: 953 ALQQ 956


>gi|58268868|ref|XP_571590.1| alanine-tRNA ligase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134113024|ref|XP_774788.1| hypothetical protein CNBF2180 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257434|gb|EAL20141.1| hypothetical protein CNBF2180 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57227825|gb|AAW44283.1| alanine-tRNA ligase, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1012

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/968 (30%), Positives = 441/968 (45%), Gaps = 95/968 (9%)

Query: 4    VSSIRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
             + +R TF+++F       H   PSS ++P +D TL+F N+GM  +K +F G   P    
Sbjct: 62   AAKVRQTFIDYFVNQPGFEHTFWPSSGVVPFDDDTLLFANAGMNQYKPLFLGTADPKSEL 121

Query: 59   ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  A+ +AWDLLT
Sbjct: 122  SKLIRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVGALTMAWDLLT 181

Query: 116  KEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
            + + L + RLY+T ++         D EA ++W+ + G+    I+     DNFW M  TG
Sbjct: 182  RVYGLPKDRLYVTYFEGDAKQGLEPDSEAQQIWRDL-GVPESHILPGNAKDNFWEMGATG 240

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPCSEI FD+           + +    +EIWN VF+Q+ ++   E   LP   +DTG
Sbjct: 241  PCGPCSEIHFDRI-GGRDAAHLVNADDPNVLEIWNNVFIQYNREPSGELRTLPAKHVDTG 299

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
            MG ER+ +VL   ++NYD D+F  +    +++TG +                 +RVI DH
Sbjct: 300  MGFERLVSVLHNVSSNYDTDVFTPIFSKIQELTGARPYEGKLGDEDKDGIDTAYRVIADH 359

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YTEPLMMHLLPALCTEMGSA 336
            +R+ +  I+DG +P  +GRGYVLRR++RR + YA              L+P +   +G  
Sbjct: 360  IRTLTIAISDGGIPDKDGRGYVLRRVLRRGVRYASNKFGVKIGTFFSSLVPTVVESLGPI 419

Query: 337  YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTH 394
            +PE+ +    + E L  E+  F +TL+RG  L +   +     K  +L+G   ++LYDT+
Sbjct: 420  FPEVTKKIPELTEILNEEEASFARTLNRGEALFNKYATTAIDEKRTVLSGKDIWRLYDTY 479

Query: 395  GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
            G P+D+ Q +   RGL  ID  +F +A  E    ++A          +     L      
Sbjct: 480  GFPVDLTQIMAEERGLK-IDQEAFEKARLESLEASKAGGKEKAGALVKLDVHDLA----- 533

Query: 455  TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKV 511
                             D             + + + VK+I    + +            
Sbjct: 534  ------------ALEANDAVPKTDDSFKYHLDDIKANVKSIYHGSKFLNSTSELPPNTTF 581

Query: 512  EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
             ++ D+T FYAE+GGQ  DTG    DG      +  +   G  +H   +E G +     +
Sbjct: 582  GILLDRTNFYAESGGQEYDTGVIAIDGKAEFKVEDVQVYNGYVLHIGRMEEGDIEIGDEV 641

Query: 572  VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + T D   R  +  NH+ TH+L+ AL  +LG H+ Q GS + P  LRFD +H K I   E
Sbjct: 642  ICTYDELRRWPIRNNHTGTHILNFALREVLGDHIDQKGSLVAPTKLRFDFSHGKSIAVPE 701

Query: 632  LKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVE-------- 682
            L  IE   ND I + +PV  + M   +A    G  A+ G  Y D VRVVS+         
Sbjct: 702  LIKIEGICNDWIKRGVPVYAKDMPLAEAYKIPGLRAVFGEAYPDPVRVVSLGYPLEDIAK 761

Query: 683  ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------ 733
                      S   CGGTHV+ T +I    I+ ESSI  GIRRI A+TG  A        
Sbjct: 762  NVEDSKWRQTSIEFCGGTHVAKTDDIKDFVIIEESSIAKGIRRIVAVTGHDAHDVSRKGV 821

Query: 734  HLMGQDEKLKSLASFLK------------------VSQGNVVGRVEEIWEEYRKLQLIHA 775
                + +++K L    K                  + + ++  + E+I  E         
Sbjct: 822  EFERKLQRIKELQGKEKEVAMKPFLVELGQSGISLIKKNSLKEQFEKIQGELVAAAKAKV 881

Query: 776  KRKLQLNVEDLSC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK 832
                ++  E +     +  + N  +       +SK L + + A +      +       +
Sbjct: 882  AADSKIISEAIKTYFQENPNENVFAGSFDVGGNSKTLTAAVAAGKSA-SKAVYAFSADPE 940

Query: 833  EKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K + +  + + +      +A       AKV+ GG GGGR   A   G   +K D+AI 
Sbjct: 941  TGKVAHVNYLPKPILESKALDAKIWLNEVAKVI-GGKGGGRDDSAAGVGSEISKIDEAIV 999

Query: 891  GVASFLKK 898
               S  KK
Sbjct: 1000 VAKSVYKK 1007


>gi|229093459|ref|ZP_04224562.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228689930|gb|EEL43734.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-42]
          Length = 791

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/823 (37%), Positives = 475/823 (57%), Gaps = 53/823 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFS G YFKE AI  AW+ LT  K    D+  L +T++ EDEEAF +W +  G+  +
Sbjct: 1   MLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKE 60

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG----LPGSSEEGERYIEIWNLVF 205
           +IIR+   +NFW + E GP GP +EIF+D+GE               E ERY+E+WNLVF
Sbjct: 61  RIIRL--EENFWDIGE-GPSGPNTEIFYDRGEAYGNDFSDPELYPGGENERYLEVWNLVF 117

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE 265
            QF          LPK +IDTGMGLERM +++Q+   N+D DLF  +I A+E ++G KY 
Sbjct: 118 SQFNHNPDGSYTPLPKKNIDTGMGLERMTSIVQDVPTNFDTDLFMPMIGATETISGEKYR 177

Query: 266 GNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
             +    +  +VI DH+R+ +F + DG LP+NEGRGYVLRR++RRA+ Y++ L    P M
Sbjct: 178 NGDLEKDMAFKVIADHIRTVTFAVGDGALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFM 237

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-- 380
             L+P +   M   YPE+++ K  I + +++E+ERF +TL  G  +L  V++   +++  
Sbjct: 238 FELVPVVGEVMKDFYPEVLEKKDFIAKVVKNEEERFHETLHDGEAILAEVIAKAKEEKTT 297

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           +++G  AF+LYDT+G P+++ ++     G+  +D   F   +E+QR RARA    + S  
Sbjct: 298 VISGVDAFRLYDTYGFPIELTEEYAEEAGMT-VDHEGFENEMEKQRERARAARQDVDSMQ 356

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
            +     L E   A++F+GY                        T    S V A+V+ GE
Sbjct: 357 VQGGV--LGEVKVASEFVGY-----------------------GTVATESNVVALVKNGE 391

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
             +    G++ +++ D TPFYAE+GGQ+ D G  + DG+++ + DVQK   G  +H  +V
Sbjct: 392 YTDSLQVGEEGQLMLDVTPFYAESGGQIADRGYLLADGVKVLVKDVQKAPNGQNLHQVVV 451

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E G L+ + ++   ID +NR  +  NH+ATHLLH AL  +LG+HV+Q GS +T + LRFD
Sbjct: 452 EEGTLKKDAAVKAIIDTKNRSSVVKNHTATHLLHQALKDVLGTHVNQAGSLVTSERLRFD 511

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +H   + + EL+ IE  VN+ I +++ V       E+A   GA AL G KY D VRVV 
Sbjct: 512 FSHFGQVQADELEKIERIVNEKIWESIDVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQ 571

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           V     G +S  LCGG HV +T  I +  IV+ES I AG RRIEA+TG+ A   +  Q  
Sbjct: 572 V-----GDYSLELCGGCHVDNTASIGIFKIVAESGIGAGTRRIEAVTGKSAYELMNDQVG 626

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVN 795
            LK  A  +K +  +++ RV+ ++ E ++LQ  +     +L+  +      S   +  VN
Sbjct: 627 LLKEAAGKMKTNPKDILTRVDGLFAEVKQLQKENESLAAKLSNIEAGNLTDSVMTVDGVN 686

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVD 854
            ++  ++  D   L+++MD L+ K++S +++L  +  + K ++L  VT+DL+   ++A  
Sbjct: 687 VLAAKVNVADMNNLRTMMDDLKNKLESAVVVLASV-NDDKVNILAGVTKDLISQGYHAGK 745

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L +  A   GGGG GGRP MAQ+GG N  + ++A+A V  ++K
Sbjct: 746 LVKEVASRCGGGG-GGRPDMAQAGGKNPAQVEEALAFVQEYVK 787


>gi|224014532|ref|XP_002296928.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335]
 gi|220968308|gb|EED86656.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335]
          Length = 933

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/952 (32%), Positives = 467/952 (49%), Gaps = 88/952 (9%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
             S IR+TF+ +FQ K+ H  +PSS   P NDPTL+FTN+GM  FK IF G+  P     
Sbjct: 3   TTSKIRSTFISYFQSKHSHTFIPSSPSAPLNDPTLLFTNAGMNQFKPIFLGRAPPGTELA 62

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
                   QKC+RAGGKHNDL++VG+   HHTFFEMLG++SFG YFK+ AI  AWDLLT+
Sbjct: 63  TLTRAVNSQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGSWSFGDYFKKEAIDYAWDLLTE 122

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +++ RLY T +        +ED EA   W +   L  ++++  +  DNFW M +TGP
Sbjct: 123 VYGIEEERLYATYFQGDEALGLEEDTEAKDFWLRY--LPEERVLGCSAKDNFWEMGDTGP 180

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           +E+    IEIWNLVF+QF +        LP   +DTGM
Sbjct: 181 CGPCSEIHYDRIGNRDASA-LVNEDDPDVIEIWNLVFIQFNRDENG-LNPLPAKHVDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHL 279
           GLER+ ++LQ K++NYDID F  +  A E+V  +         + +      +R + DH 
Sbjct: 239 GLERLCSLLQNKSSNYDIDAFTPIFDAIEKVANVGPYEGKLGEEDKTLKDTAYRAVADHA 298

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +F +ADG +P NEGRGYVLRRI+RRA  Y +  L         L+P +    G  YP
Sbjct: 299 RTLTFALADGAVPDNEGRGYVLRRILRRATRYGQQILKCEPGFFSTLVPVVVEIFGEHYP 358

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           ELI  +  I E ++ E+E F   LDRG+   +  +S   K +++ GD AF LYDT G P+
Sbjct: 359 ELIANQANIIEIVQEEEEAFSTMLDRGIKYFEEEISD-DKKKLVPGDKAFFLYDTLGFPI 417

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ + +    G+  +D+  F + +E Q+ R+R   L       +++   L  +       
Sbjct: 418 DLTELMATEAGMT-VDMKGFEEEMEGQKQRSREARLAAKGLGGQRL--ELIAE------- 467

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEVVF 515
                + +    E           D    V + +KA+      +   + A  G  V +V 
Sbjct: 468 -----QTAWLADEGIADTDDSSKYDWDKVVDASIKAVFTSDGFLGEGDVAKEGDTVGLVL 522

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAEAGGQ  D G    +G  L + DVQ       +H  ++ +G +   +++   +
Sbjct: 523 DKTSFYAEAGGQDTDLGTISFEGGELFVNDVQAYGGY-ILHSGVISKGSVSVGIAVKCQV 581

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           DY  RR ++ NHS TH+L+ AL  +LG    Q GS    + LRFD +H   +++ +L+  
Sbjct: 582 DYARRRDVAPNHSMTHVLNAALREVLGEGCDQRGSQCNDEKLRFDFSHKSAMSTEQLRDT 641

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E  V D I +NLPV   +M+  DA A  G  A+ G  Y D VRVV V        S   C
Sbjct: 642 EIYVRDTIEKNLPVTADVMSLADAKAIPGVRAMFGEVYPDPVRVVRVGD----DCSVEFC 697

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK----------- 743
           GGTH+S+T E     +  E+++  GIRRI A+T   A        E++            
Sbjct: 698 GGTHISNTAEAEAFVLTEETAVAKGIRRITALTRGAAFEQKTAALEEIDADNSPDLDKQA 757

Query: 744 ----------SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCH 789
                      L++ LK     +  R+E + ++  + +      ++        E++   
Sbjct: 758 GALRKDLDAAELSAALKS---ELRARIEGVQKKGIEAKKRLLAGRVDKCLNGVTEEVEKA 814

Query: 790 KIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK---EKKASVLIVVTED 845
            I     +   +    DSK  + V+ A+QK       M +   +     K     +V + 
Sbjct: 815 LIDGKKSLVLNLDIGADSKASQKVIKAVQKLAPEMAFMGISEEEPGSGGKILCFAIVPDS 874

Query: 846 LLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           L+      A +  +     +GG G GG+P  AQ   P+       IA   SF
Sbjct: 875 LMKETGLKANEWTKEVLDSVGGRG-GGKPGSAQGQAPSCEDVGAVIAKAESF 925


>gi|146321099|ref|YP_001200810.1| alanyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|145691905|gb|ABP92410.1| Alanyl-tRNA synthetase [Streptococcus suis 98HAH33]
          Length = 830

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/856 (34%), Positives = 460/856 (53%), Gaps = 63/856 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+G     E I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +T+  G    + ++  L  +    ++G   FKLYDT+G  +++ +++ 
Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +DI  F  A++EQ+ RARA  +  GS   +    +L      + F+       
Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN--ETLAAITEESTFV------- 462

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + + +  IV      E    GQ   +VFDQTPFYAE G
Sbjct: 463 -----------------YGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G        +  T +  +KA      H +     +    +  L I+ + R+ + 
Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVELSASISVGQTYTLEIETKRRKGVE 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ VN+ I 
Sbjct: 565 KNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQIW 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T E
Sbjct: 625 NAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTAE 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  +VE +
Sbjct: 680 IGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESL 739

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            ++ R LQ  +A  K +           +      + +++  +   D+  L++  D  ++
Sbjct: 740 AQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEK 834
           K  S +++LV    +K
Sbjct: 800 KDYSDVLVLVAAIGDK 815


>gi|154288058|ref|XP_001544824.1| hypothetical protein HCAG_01871 [Ajellomyces capsulatus NAm1]
 gi|150408465|gb|EDN04006.1| hypothetical protein HCAG_01871 [Ajellomyces capsulatus NAm1]
          Length = 910

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/965 (29%), Positives = 437/965 (45%), Gaps = 146/965 (15%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       +  
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA +LW    G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PARLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+
Sbjct: 196 EIHYDRI-GGRNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L     ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKSSNYDTDVFTPLFGKISEITGCRPYTGKFHDEDTDGIDTAYRVVADHVRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342
            I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG  L +     +       L+G   ++LYDT G P+D+
Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGFGKLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   RGL        N   EE R +A+  S G G  T + +  ++ +          
Sbjct: 435 TRLMAEERGLTID-----NAEFEEARLKAKEASKGQGKRTADVVKLTVHDLG-------- 481

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                      +      +        ++S +KAI      V+       G++  ++ D+
Sbjct: 482 ------LLETMEDVPKTNEDAKFGRGNITSQIKAIYYNKNFVDSTKHIPQGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  I     +         +   +   I   G              
Sbjct: 536 TNFYAEQGGQENDTGKII-----IDGKAELAVEDVQVLGDGIEHNG-------------- 576

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
                                           S +  + LRFD +H   ++ ++L+ IE 
Sbjct: 577 --------------------------------SLVAAEKLRFDFSHKSAVSDSDLEKIER 604

Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V  + +        SG  A+ G  Y D VRVVSV               
Sbjct: 605 ISTDYIRQNCAVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 664

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR----------SHL 735
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A             L
Sbjct: 665 WKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 724

Query: 736 MGQDEKL----KSL-ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776
              ++      K + A  L+V    +    V +           +++ E  +  Q + +K
Sbjct: 725 RRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQKLESK 784

Query: 777 RKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834
           + L                + +  +    + K L   ++ ++ K+Q   + +    KE  
Sbjct: 785 KALDAITGYFEAPENKVAPHLVMQLPISANPKALSDSLNFVKTKMQDKSVYVFAADKEAG 844

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K      V + L +      D A   + ++ GG  GG+  ++   G    K D+AI    
Sbjct: 845 KVVHGCHVAQALSEQGATPNDWANTVSSIV-GGRAGGKAPISIGNGTEAEKLDEAIKAAT 903

Query: 894 SFLKK 898
            +L+K
Sbjct: 904 EYLEK 908


>gi|225560127|gb|EEH08409.1| alanyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 1029

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/965 (30%), Positives = 446/965 (46%), Gaps = 116/965 (12%)

Query: 7    IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
            +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       +  
Sbjct: 106  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 165

Query: 62   TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
               QK                     TFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+
Sbjct: 166  HNSQK---------------------TFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 204

Query: 122  QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
              RLY+T ++         D EA +LW    G++ D ++     DNFW M E GPCGPCS
Sbjct: 205  PDRLYVTYFEGNPDAGIGPDLEAKELWLS-VGVAEDHLLSGNMKDNFWEMGEQGPCGPCS 263

Query: 174  EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
            EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+
Sbjct: 264  EIHYDRI-GGRNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERL 322

Query: 234  ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
             ++LQ K++NYD D+F  L +   ++TG +                 +RV+ DH+R+ +F
Sbjct: 323  VSILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRTLTF 382

Query: 285  LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQ 342
             I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 383  AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRR 442

Query: 343  AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
             +  + E L  E+  F KTLDRG  L +     +       L+G   ++LYDT G P+D+
Sbjct: 443  KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGFGKLHGADVWRLYDTFGFPVDL 502

Query: 401  MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             + +   RGL        N   EE R +A+  S G G  T + +  ++ +          
Sbjct: 503  TRLMAEERGLTID-----NAEFEEARLKAKEASKGQGKRTADVVKLTVHDLG-------- 549

Query: 461  DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQ 517
                       D               ++S +KAI    + V+       G++  ++ D+
Sbjct: 550  ------LLETMDDVPKTNDDAKFGRGNITSQIKAIYYNKKFVDSTKDIPQGEQFGIILDR 603

Query: 518  TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
            T FYAE GGQ  DTG  I DG      +  +   G  +H   ++ G      S++   D 
Sbjct: 604  TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYGGYILHTGFMKYGSFNVNDSVIAEYDE 663

Query: 578  QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
              R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   ++ ++L+ IE 
Sbjct: 664  LRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIER 723

Query: 638  NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
               D I QN  V  + +        SG  A+ G  Y D VRVVSV               
Sbjct: 724  ISTDYIRQNCAVYAKDVPLAIARGISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPR 783

Query: 686  GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR----------SHL 735
                S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A             L
Sbjct: 784  WKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGERL 843

Query: 736  MGQDEKL----KSL-ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHAK 776
               ++      K + A  L+V    +    V +           +++ E  +  Q + +K
Sbjct: 844  RRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQKLESK 903

Query: 777  RKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-K 834
            + L                + +  +    + K L   ++ ++ K+Q   + +    KE  
Sbjct: 904  KALDAITGYFEAPENKVASHLVMQLPISANPKALSDSLNFVKTKMQDKSVYMFAADKEAG 963

Query: 835  KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K      V + L +      D A   + ++ GG  GG+  ++   G    K D+AI    
Sbjct: 964  KVVHGCHVAQALSEQGATPNDWANTVSSIV-GGRAGGKAPISIGNGTEAEKLDEAIKAAT 1022

Query: 894  SFLKK 898
             +L+K
Sbjct: 1023 EYLEK 1027


>gi|323307226|gb|EGA60508.1| Ala1p [Saccharomyces cerevisiae FostersO]
          Length = 833

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/831 (32%), Positives = 413/831 (49%), Gaps = 66/831 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK   G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +     +   + + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E   A  
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                           +           +  V   +  +      V+E    G+K  ++ 
Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + D       +  +   G   H   +E G L     ++ + 
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK +
Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648

Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           ED  N+ I +NL      I         G  A+ G  Y D VRVVSV             
Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A       ++   
Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
            L +  K+    +  +      + ++L +   +  + +  ++    K   +
Sbjct: 769 DLDAADKLPFSPIKEK------KLKELGVKLGQLSISVITKNELKQKFNKI 813


>gi|187735876|ref|YP_001877988.1| alanyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|205829974|sp|B2UKT4|SYA_AKKM8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187425928|gb|ACD05207.1| alanyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 942

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/949 (31%), Positives = 446/949 (46%), Gaps = 135/949 (14%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           M   + IR +FL+FF++  H ++PS+SL+P + P L+FTN+GM  F   F G   P +  
Sbjct: 1   MMTATEIRQSFLDFFREKQHTVVPSASLMPQS-PGLLFTNAGMNQFVPYFLGVWTPPWTP 59

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T  QKC+RAGGKHNDL++VG  + HHTFFEMLGN+SFG YFK  AI+ AW+L+ + +
Sbjct: 60  ARATDTQKCIRAGGKHNDLEDVGYDSYHHTFFEMLGNWSFGDYFKREAIRWAWELVVERW 119

Query: 119 DLDQRRLYITVYDEDE----------EAFKLWKKI---SGLSAD-KIIRITTNDNFWSMA 164
                RLY TVY  D+          EA+  W ++    GL  D  I+     DNFW M 
Sbjct: 120 GFPAERLYATVYAPDKSKGDPGEFDREAWDFWAELFRSRGLDPDVHIVHGNVKDNFWMMG 179

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+  D            +++ ++ IEIWNLVF+Q+  ++      LP   +
Sbjct: 180 ETGPCGPCSELHVDLTPEGNTKGSLVNKDSDQCIEIWNLVFIQYNAESDGSMRNLPACHV 239

Query: 225 DTGMGLERMATVLQE---------KTNNYDIDLFKHLIQASEQVTGMKYEG--------- 266
           DTGMG ER  +++Q          K +NY  D+F+ L    E ++G KY           
Sbjct: 240 DTGMGFERACSIMQCTNGFKDFSRKPSNYATDVFRPLFDRLEVLSGRKYADVYPAPGSKR 299

Query: 267 --------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
                      +  RVI DHLR+ SF IADGILP N GR YVLRRI+RRA+ Y R LG+T
Sbjct: 300 VDAEDGTLQEAIAFRVIADHLRTLSFSIADGILPGNNGRNYVLRRILRRAVRYGRRLGFT 359

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
           +P +  L+  L    G  +PEL      ++E L  E+  F +TLDRGL L D   +    
Sbjct: 360 QPFLAELVDTLVESFGQVFPELAARATTVKEVLNREEASFNETLDRGLELFD---AETAS 416

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438
              ++G+ AFKLYDT+G P+D+   +   RGL  ID+  FN+ +EEQR RARA       
Sbjct: 417 AGKVSGEFAFKLYDTYGFPIDLTALLAEERGL-DIDMERFNRLMEEQRERARAARKSEVV 475

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
              +       +    T+F GYD+   +  + E  +                        
Sbjct: 476 RALD------LKTDAVTEFTGYDVDECAATVLEVSR------------------------ 505

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
                    G  + ++ D+TPFYAE GGQ+ D G     G    +  VQ+          
Sbjct: 506 --------QGDSLFIITDKTPFYAEMGGQVSDAGLIEIGGESYHVMAVQQIGNARAHVVE 557

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 ++    + L+ID + RR++  +H+ATHLLH AL  ++    +Q GS ++ D LR
Sbjct: 558 ARPGLEVKPGDRVHLSIDAERRRRIEAHHTATHLLHCALHQVVSPDAAQQGSFVSEDRLR 617

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVR 677
           FD   S  ++  +L+ IE+ VN  I ++LPV        D   + A A   G KY D VR
Sbjct: 618 FDFN-SSAVSPDQLRLIEEKVNGWIEESLPVHCTERAYADVKGNAAIAQFFGDKYGDVVR 676

Query: 678 VVSVEYEDGGVHSS--ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VV V     G+       CGGTH+++T  I L  I SE +I +G+RRIEA+TG  A   +
Sbjct: 677 VVQVGGCRDGLDGVSMEFCGGTHIANTKNIGLFKIKSEGAIASGVRRIEAMTGDAALEMI 736

Query: 736 MG----QDEKLKSLASFLKVSQGNVVG--------------------------------- 758
                 +  ++      +K     +                                   
Sbjct: 737 RQHVVAKSLEIAKAVEKIKEVNYELADMGLEQVPVPTIEGKPGLTALGASDIRTVNDSLA 796

Query: 759 ----RVEEIWEEYRKLQLIHAKRKL---QLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
                VE   +     +    K +        + L    ++D       ++E   + L+ 
Sbjct: 797 RFDASVEHFKQTALDAEKKLKKARAGQSAAKADALLNEWLSDAPSSLIQVAEGAGELLQE 856

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLS 859
           +++ L+K+  +G   L+ +       +     +D + D  +A D+ R  
Sbjct: 857 LLNGLKKRQYAGAAFLLCVDSSS-LLLGAYCGKDAIADGLSAGDMIREV 904


>gi|296129664|ref|YP_003636914.1| alanyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
 gi|296021479|gb|ADG74715.1| alanyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
          Length = 897

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/932 (33%), Positives = 482/932 (51%), Gaps = 72/932 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F    H ++PS  LI   DP+++FT +GMVPF     G +   +  V
Sbjct: 1   MRTAEIRQRWLDYFASKDHAIVPSVPLISP-DPSILFTIAGMVPFIPYILGTQDAPWPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-----K 116
              QKC+R     ND++NVGRT RH TFF+MLGNFSFG YFKE AI+LAW  LT      
Sbjct: 60  ANAQKCIRT----NDIENVGRTTRHGTFFQMLGNFSFGDYFKEGAIELAWGFLTGAQESG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  RL++T+++ED+EA        G+    ++R+T  + FW   + GP GPC+E  
Sbjct: 116 GLGLDGDRLWVTIWNEDDEAADA-LVRVGVDPRHVVRLTREEIFWDTGQPGPAGPCAEWH 174

Query: 177 FDQGECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGM 228
           +D+G               G+RY+EIWNLVF QF +  +      P      + +IDTG 
Sbjct: 175 YDRGPEFGPDAVGGTVDPGGDRYLEIWNLVFDQFVR-GEGRGKDYPLLGELERKAIDTGA 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           GLER+A +LQ K N Y+ D    +I+ + +++G +Y   G + V  RV+ DH+RS+  LI
Sbjct: 234 GLERIAYLLQGKNNLYETDEVFPVIERAAELSGRRYGASGEDDVRLRVVGDHVRSALMLI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLP     MG +YPE+++    
Sbjct: 294 GDGVTPSNEGRGYVLRRLVRRAVRSMRLLGVEDAALPELLPISRDLMGVSYPEVVRDFDR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG-----KDEILNGDVAFKLYDTHGLPLDIM 401
           I +    E++ F +TL  G  + +G +S           +L G+ AF L+DT+G P+D+ 
Sbjct: 354 ISQVAYGEEDAFLRTLTAGTTIFEGAVSKAKAGADGTGVVLTGEQAFALHDTYGFPIDLT 413

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK------EKYGAT 455
            ++    G   +D  +F   ++ QR RARA +L   +G  +   +         E   + 
Sbjct: 414 LEMAAEHG-VDVDEQAFRTLMQAQRDRARADALAKKTGHADTSTYQQLQQALSAENGASV 472

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +F+GY                            ++ V  ++  G     A +   V+VV 
Sbjct: 473 RFVGYTDT-----------------------TAATKVVGLLVDGVPAPAATAPADVQVVL 509

Query: 516 DQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D TPFYAEAGGQL DTG  ++ DG  +++ DVQ   +G+ VHH  +  G L    +   T
Sbjct: 510 DVTPFYAEAGGQLADTGTISLADGAIVEVDDVQAPIKGLSVHHGRLVDGTLTLGDTGTAT 569

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID   RR ++  H+ATH++H AL   LG   +Q GS   P  LRFD    + + ++ L  
Sbjct: 570 IDTARRRAIARAHTATHMVHKALREELGDTATQAGSENAPSRLRFDFRSGQSVPASSLSQ 629

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  VN+ +  +L V  R M  ++A A GA AL G KY + VRVVS+    GG  S  LC
Sbjct: 630 IEGRVNERLQDDLEVTDRTMAIDEARALGAMALFGEKYGNEVRVVSI----GGDWSRELC 685

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            GTHV  +GE+ L+ ++ ESSI +G+RR++A+ G  A  +   +   +  L+  L     
Sbjct: 686 AGTHVRRSGELGLVTLLGESSIGSGVRRVDALVGDSAYGYQAKERALVSQLSGLLGARPD 745

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEV-DSKE 808
            +  RV  +    R+ +   A  +        +       ++     ++H   EV  + +
Sbjct: 746 ELGERVSSLLTRVRESEKELAALRQAQVLAAASGLAAGAQQVGTALVVAHDAGEVAAADD 805

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGG 865
           L+++   ++ ++     ++V +    K   ++VV  +   R     A  L R ++ VLGG
Sbjct: 806 LRTLALDVRGRLGESSPVVVAVGGVAKGRPVVVVVTNAAAREAGHRAGALVRTASGVLGG 865

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GG GG+  +AQ GG + ++   A+ GV + ++
Sbjct: 866 GG-GGKDDVAQGGGTDASRLPDALDGVVAAVR 896


>gi|294786852|ref|ZP_06752106.1| alanine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315226488|ref|ZP_07868276.1| alanine--tRNA ligase [Parascardovia denticolens DSM 10105]
 gi|294485685|gb|EFG33319.1| alanine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315120620|gb|EFT83752.1| alanine--tRNA ligase [Parascardovia denticolens DSM 10105]
          Length = 903

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/929 (34%), Positives = 484/929 (52%), Gaps = 73/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   F+ +F+K GH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTSEIAKRFVTYFEKQGHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+ QKCVR      D+D VG+T RH TFF+MLGNFS G YFK+ AI  AWDLLT      
Sbjct: 60  TSNQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSIGDYFKKEAIHYAWDLLTSPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  ++ +L++T Y +DEEA  LW K  G+  + +  +   DNFW+    GP GPC+EI+
Sbjct: 116 GYGFEKDKLWVTTYTDDEEARSLW-KTEGMDPEHMQVLGMEDNFWTTGGPGPGGPCTEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G          + E  RYIEIW+LVF  FE  N + +        L   +IDTGMGL
Sbjct: 175 VDRGPEYGPDGGPIASES-RYIEIWDLVFENFEVDNVKSKTNLHIVGELANKNIDTGMGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+ +E+++G KY  +  + V  RV+ DH+RS+  ++ D
Sbjct: 234 ERVAYLLQGKQNIYETDEIFPVIEEAERLSGRKYGDDPEDDVRFRVVADHVRSALMIMGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRR++RR++   ++LG  + +  HLLP    +M  +YPEL  +   + 
Sbjct: 294 GVRPSNEGRGYVLRRLIRRSIRAMKMLGVEQEVFPHLLPVSEAQMKLSYPELESSFAEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--------GKDEILNGDVAFKLYDTHGLPLDI 400
           ET   E+  F +TLD+G  +LD  +S           +  +++G  AF L+DT+G P+++
Sbjct: 354 ETAFGEEAAFRRTLDQGSTILDVAISQAKKDASEKGQEQPVVSGKEAFTLHDTYGFPIEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIG 459
             +I   +G  G+D  SF + + EQ+ RARA +L         ++   K+      +F G
Sbjct: 414 TTEIAREQG-VGVDDRSFRELMAEQKQRARADALKKRHNVDLSVYDDAKKALAKPIEFTG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQT 518
           Y                               V AI+ +    V  A +   VEV+ D+T
Sbjct: 473 YKEFSSR-----------------------GTVLAIIDEETGSVRSASAPATVEVILDRT 509

Query: 519 PFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           PFYAE GGQ+ D G    D    L++ DVQK  + ++V H  +  G L     +  +ID 
Sbjct: 510 PFYAEQGGQMADYGEIESDQGAVLEVDDVQKPVKDLYVQHCRLTEGSLTVGDQVSSSIDV 569

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  ++  H+ATH+LH  +  +LG   +Q+GS + PD LRFD   SK +T  +L  IE 
Sbjct: 570 DRRIGMTHAHTATHVLHKVVREVLGEKATQSGSVVDPDRLRFDFHWSKALTQDQLGQIEA 629

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  I  +L V  + M  +DA+  GA  L G KY D VRVV++        S  LCGGT
Sbjct: 630 RVNARIRDDLEVSWKNMPIDDALELGAMHLFGDKYGDIVRVVTIG---NDGWSRELCGGT 686

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H S TG I    ++SESS+  G+RRIEA+ G ++  +   Q + +  LA+ L      V 
Sbjct: 687 HASRTGTIGSFTLISESSVGTGLRRIEALVGAKSYEYNHRQHQVINRLANGLNARADEVE 746

Query: 758 GRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVN-----FMSHIISEV-DSKE 808
            RV  + E  ++ Q   A   +R++   +  L     +             +     ++ 
Sbjct: 747 TRVLGLEESLKEAQAKLASIYERQISAMIPALVDQAKSGSPDADLLLAIRNVGSFGSAEA 806

Query: 809 LKSVMDALQKKIQS---GIIMLVGISKE-KKASVLIVVTEDLLD-RFNAVDLARLSAKVL 863
           L+  +   + ++      ++ L G+S E  K  + +   E        A DL R + +VL
Sbjct: 807 LRKAVTDTRAQLGEDKAAVVCLAGVSSETGKPVIFVATNEAARKAGIKAGDLVRSAFQVL 866

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGG GG+P  AQ GG + ++ D A+  V
Sbjct: 867 GGGG-GGKPDFAQGGGQDASRLDAALKIV 894


>gi|32490983|ref|NP_871237.1| hypothetical protein WGLp234 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173144|sp|Q8D2W8|SYA_WIGBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|25166189|dbj|BAC24380.1| alaS [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 873

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/897 (35%), Positives = 494/897 (55%), Gaps = 65/897 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL FF +  H+++ SS+LIP ND TL+FTNSGM  FK+IF G +KP Y  
Sbjct: 1   MKKTTEIRNIFLNFFYEKKHKIMDSSTLIPDNDKTLLFTNSGMNQFKDIFLGFKKPKYIR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
           V T Q+C+R GGKHNDL+ +G+TNRHHTFFEMLGNFSFG YFK   IQ AW+LLT  K F
Sbjct: 61  VATAQRCIRVGGKHNDLNMIGKTNRHHTFFEMLGNFSFGSYFKSDTIQFAWELLTSKKWF 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           DL + +L +T+Y +D E++ LW + + ++   II I          DNFW+M +TGPCGP
Sbjct: 121 DLSKEKLIVTIYYKDIESYNLWVEKTNINPKNIIFIKDKNNILYNSDNFWTMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           CSEIF+  G+ I           E YIEIWNLVFMQF      +   LP  SIDTGMGLE
Sbjct: 181 CSEIFYFFGKSI--NYKNIKIYDEEYIEIWNLVFMQFNLHLNGKLSRLPITSIDTGMGLE 238

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ+  +NY IDLFK LI    ++  +K       + R+I DH+RS+ FLI DG++
Sbjct: 239 RISCVLQKVNSNYSIDLFKKLIYEISKIIEIK--NIKNYSLRIIADHIRSAIFLIYDGVI 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+ EGRGYVLRRI+RRA+ +   +         L+      M     ++I+ K  IE  +
Sbjct: 297 PSKEGRGYVLRRIIRRAIFHGNYILNKSCFFYKLVSPAINIMSYIDSKIIKKKKEIENII 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E++ F  ++ +G+ +         K+ IL G++AFKL+DT G P+D+  + +C +   
Sbjct: 357 KEEEKIFFFSIKKGM-IFLNKNLKKIKNNILKGEIAFKLHDTFGFPIDLT-NDICIKNKI 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+ EQ++++  +S         K    L   Y  T+F GY  L+       
Sbjct: 415 NVDEKGFFHAMNEQKNKSYKNSCF------NKFNLKLLNNY-CTKFCGYSYLK------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S +  I    E ++E    Q+  ++ D+TPFY E+GGQ+GD+
Sbjct: 461 ----------------CESQILNIYNLKEEIKEIKENQEGIIILDKTPFYGESGGQVGDS 504

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D +K     F H+  V +GIL+    +   ++   R ++S+NHS+TH
Sbjct: 505 GEIKSKDGVFSVIDTKKLGNY-FYHYGKVIQGILKINNKITAYVNKIKRNKISLNHSSTH 563

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH+A++ +L  ++ Q GS I    L FD ++ K I   ++  IE+ +N+ I  N+ + +
Sbjct: 564 LLHYAINCLLDKNIIQKGSLICEKYLSFDFSYGKKINIEKINEIENIINEKIRDNVIIHS 623

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ ++A+  GA AL   KY D VRV+++     G  S  LCGGTH + TG+I    I 
Sbjct: 624 NNMDLKNALKIGAKALFKNKYKDLVRVLNI-----GDFSIELCGGTHANRTGDIGCFVIT 678

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           + S I +   RI+AITG+ A + +  +   + +++S +K +   +V ++E+I E  + L+
Sbjct: 679 NFSKISSDTYRIKAITGETAIAFIQKKFNDINTISSLIKSNSNEIVNKIEKITENLKILE 738

Query: 772 LIHAKRKLQLNVE--DLSCHKIADVNFMSHIIS----EVDSKELKSVMDALQKKIQSGII 825
             +   K ++      L  +KI  +N    I+     E+D   L+ +++ ++  +++GI+
Sbjct: 739 KKNKNLKNKIIKNYIKLIFNKIKKINNFEIIMDYFNEEIDKIILREILNKVKTNLKNGIV 798

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLA---RLSAKVLGGGGGGGRPHMAQSGG 879
           +L  I K+    ++  VT +L++   A ++    +    +     GGG  + A++ G
Sbjct: 799 ILASIKKDN-LYIVTGVTNNLVNIITAKEIISYFKEIKSI----KGGGNSYFAEAVG 850


>gi|323303022|gb|EGA56826.1| Ala1p [Saccharomyces cerevisiae FostersB]
          Length = 810

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/822 (33%), Positives = 411/822 (50%), Gaps = 66/822 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK   G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +     +   + + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E   A  
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                           +           +  V   +  +      V+E    G+K  ++ 
Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + D       +  +   G   H   +E G L     ++ + 
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK +
Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKKV 648

Query: 636 EDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           ED  N+ I +NL      I         G  A+ G  Y D VRVVSV             
Sbjct: 649 EDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPAN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A       ++   
Sbjct: 709 EEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFAA 768

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            L +  K+    +  +      + ++L +   +  + +  ++
Sbjct: 769 DLDAADKLPFSPIKEK------KLKELGVKLGQLSISVITKN 804


>gi|327262296|ref|XP_003215961.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like [Anolis
           carolinensis]
          Length = 988

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/963 (29%), Positives = 443/963 (46%), Gaps = 81/963 (8%)

Query: 3   NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
           + + +R +F+ FFQ+  GH+++ SS + P  DP L+F N+GM  FK IF G   P     
Sbjct: 36  SSARVRQSFIRFFQEKYGHQVVASSPVRPRADPGLLFVNAGMNQFKPIFLGTADPRSEMT 95

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKCVRAGGKHNDL++VGR   HHTFFEMLGN+SFG YFKE A ++AW+LLT+
Sbjct: 96  RYRRVVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGNWSFGDYFKEEACKMAWELLTE 155

Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            +++ +  LY+T +          DEE  ++W    GLS   ++     DNFW M ++GP
Sbjct: 156 VYEIPKDHLYVTYFGGNAALGLSADEETREIWLNQ-GLSPSHVLPFEMKDNFWEMGDSGP 214

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D            ++     +EIWNLVFMQ+ ++       LP+  +DTGM
Sbjct: 215 CGPCTEIHYDHIGGGRNAAAMVNKGNPDVVEIWNLVFMQYNREADGRLHQLPQHHVDTGM 274

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279
           GLER+ T+LQ K +NYD DLF  ++ A  +         + G    G   + +RV+ DH+
Sbjct: 275 GLERLMTILQNKRSNYDTDLFTPILDAIHKGCGGPNYQGLVGEADAGGVNMAYRVVADHV 334

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338
           R+ S  IADG+ P   G   VLR I+RRA+ +    L      + +L+P +   +G AYP
Sbjct: 335 RTLSICIADGVYPGMSGAELVLRHILRRAVRFCSEVLHAPPGFLANLVPVVVEILGDAYP 394

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL +    +   +   +  F  +L +G  +++  L  +   ++   ++A+ LY   G PL
Sbjct: 395 ELHRDTDKVMNIISENEAAFLSSLMQGRHVINRALQQMDHSKVFPVEIAWSLYSNLGFPL 454

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D++  +L  +G+          A E+   +AR+          +    +   + G     
Sbjct: 455 DLIALMLEEKGVQLDKAALDCLAQEDAERKARSQQEQSARMLLDVHSLAQLRRDG----- 509

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQ 517
                  S            K    +     + V  + + G + +E    GQ+  V+ DQ
Sbjct: 510 -----VPSTDDSFKYAYEIGKDGRYVFKQCKATVLMLYKDGSLQKEVSGGGQRCGVLLDQ 564

Query: 518 TPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G    G         V  +    +V H ++    L+    + L +D
Sbjct: 565 TCFYAEQGGQAPDQGYMVCGGQQDTFFPVVSVQVSAGYVIHEVIASEALKAGDQVQLFVD 624

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
             +R    +NH+ATHLL+  L  +LG    Q GS +T + LRFDV    P+ +  L+ +E
Sbjct: 625 EAHRMACMVNHTATHLLNFVLRQVLGESTEQCGSHVTAEHLRFDVRTQVPVKTEHLQEVE 684

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDG 686
           + + +II +N  V T  +  +          L   Y D V          R +  E +D 
Sbjct: 685 NVIQEIIKKNEVVCTEEVPLKLTSDIQGLRKLDDVYPDVVRVVSVGVPVKRALVRESKDA 744

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              S  LC GTH+  TG I    I+SE  +  GI  I A+TG++A+          K + 
Sbjct: 745 MHTSVELCCGTHLLRTGAIQDFTIISERQLVKGISHIIALTGEQAKKAREDGRTFAKEVE 804

Query: 747 SF-----LKVSQGNVVGRVEE---------------------IWEEYRKLQLIH--AKRK 778
           S      L  +  +   R+ +                     +    + LQ     A RK
Sbjct: 805 SLTIRVKLGGATIDEAQRLSKEVGYLTVTVYNTAMPHWQKRELQATLKALQRAANTAVRK 864

Query: 779 LQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           L+  +     HK+    +    +   I+      L  V++ L  KI +  +ML+      
Sbjct: 865 LETRLAAEEAHKLLAKYSREAIIVDTIAVESPSILMKVVNQLCAKIPAASVMLLSPQTSG 924

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           +      V+++ L  F+A D A      + GG  GG   +A+  G N N   +A+A    
Sbjct: 925 QVFCACQVSKNSLPTFSASDWALSVCTQM-GGKSGGSEVVAKGMG-NTNGLQRALATAQE 982

Query: 895 FLK 897
           + K
Sbjct: 983 YAK 985


>gi|28493343|ref|NP_787504.1| alanyl-tRNA synthetase [Tropheryma whipplei str. Twist]
 gi|28572546|ref|NP_789326.1| alanyl-tRNA synthetase [Tropheryma whipplei TW08/27]
 gi|41018202|sp|Q83GD1|SYA_TROWT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|41018203|sp|Q83HV0|SYA_TROW8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28410678|emb|CAD67064.1| alanyl-tRNA synthetase [Tropheryma whipplei TW08/27]
 gi|28476384|gb|AAO44473.1| alanyl-tRNA synthetase [Tropheryma whipplei str. Twist]
          Length = 880

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/919 (32%), Positives = 478/919 (52%), Gaps = 74/919 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF K GH++ PS+SLI  NDP++MFT +GM+PF   F   E P +  V
Sbjct: 1   MLTSDLRLLFLDFFAKRGHKVSPSASLI-SNDPSVMFTIAGMLPFIQCFLALEPPPHPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQKC+R      D+D VG+T RH TFF+M+GNFSFG YFK+ AI+ AW+ L  E DL 
Sbjct: 60  VSVQKCIRTS----DIDEVGKTPRHGTFFQMMGNFSFGDYFKKEAIEYAWEFLLSELDLA 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++T++ +D+E+ K W  + G+  +++  + +  NFWS  + GP GPCSE+F+D   
Sbjct: 116 PDRLWVTIHGDDKESEKFWL-LCGVPQERVQSLDS--NFWSTGKAGPAGPCSEVFYDLH- 171

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-RFILPKMSIDTGMGLERMATVLQEK 240
              G  PG   + +RY+E+WNLVFMQ  + N       LPK  +DTGMGLER+A + Q  
Sbjct: 172 --GGPGPGPEGDPDRYLEVWNLVFMQNLRDNDGHIISSLPKKCVDTGMGLERIAMITQGV 229

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              YD D  K ++  +  ++G +Y  +  + ++ RV+ DH+RSS  L+ADG+ P+NEGRG
Sbjct: 230 GTIYDTDELKPILDEAGYISGKRYGKDRRDDISLRVLADHIRSSLMLVADGLRPSNEGRG 289

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRR++RR++  A+LLG  E     L       M   YPEL      I++    E++ F
Sbjct: 290 YILRRLLRRSVRAAKLLGIQENCFDQLFAKAAQVMKVGYPELEGKLAEIKQVACLEEQSF 349

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            + L+ G  LL    S     + ++GD+AF+L+DTHG P+D++ +I    GL  +D+  F
Sbjct: 350 SRALNAGTQLL--SRSMSSSKKRVSGDLAFRLHDTHGFPIDLITEIAKDSGL-DVDMDGF 406

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              ++EQ+ R+RA         ++   +        + F+GY++L+              
Sbjct: 407 FTLMKEQKDRSRAALSRSKPIVSDTTGYEGLR----SNFLGYEMLQ-------------- 448

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                    V + + A+V+ G I+  A  G  V++  +QTPFYA AGGQ  D G    D 
Sbjct: 449 ---------VDTKITALVKDGTILTSAKQGDCVDIALEQTPFYATAGGQEADRGFIESDN 499

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++  V     G+ VH   +  G++ +   +  ++D  NR     +H+ATH++H  + 
Sbjct: 500 FSGKVVTVFSPLPGLTVHRCEIVSGLVVSGEVVRASVDSANRFAACQSHTATHVIHAVVR 559

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            + GS   Q GS      LRFD + S   T ++   +E+  N  I   L + +     E 
Sbjct: 560 EMFGSTSVQMGSYNRAGYLRFDFSCSYAPTDSQRIELEERANRAIQSCLEISSTYTTLEK 619

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ASGA AL G +Y D VR+V +    GG  S  LC GTH+ ++ EI ++ +VSE+S+ +
Sbjct: 620 AVASGAIALFGERYGDTVRMVEI----GGPWSRELCAGTHLRNSSEIAVVSLVSETSVAS 675

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRR+E +TG  A SH   +   + ++   L  ++  + G ++++ E  ++ +      K
Sbjct: 676 GIRRVECLTGFDAFSHFAQERALVDTVMRTLGATRQEMEGAIDDLRENLKRSKHALQTAK 735

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIIS-----------EVDSKELKSVMDALQKKIQS 822
            +               ++ V  +   +S           E  ++++++V    +K ++ 
Sbjct: 736 DKFLSAFAPRLLQEFKSVSSVRILIADLSKFLSGPLFSPFEFTAEDIRAVTLRCKKLLEE 795

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-------DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
             ++L+      +      +  DL        D  +A +L ++  K L  G GGGR   A
Sbjct: 796 PHVLLLAAVISGRVHAACSI--DLSSVKLSCMDDLSANNLIKVFLKTL-DGSGGGRADFA 852

Query: 876 QSGGPNGNKADQAIAGVAS 894
           Q  G N    D A+  + +
Sbjct: 853 QGAGWNAKLLDSALDNLKA 871


>gi|72389797|ref|XP_845193.1| alanyl-tRNA synthetase [Trypanosoma brucei TREU927]
 gi|62360052|gb|AAX80474.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei]
 gi|70801728|gb|AAZ11634.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
 gi|261328581|emb|CBH11559.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 966

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/978 (29%), Positives = 453/978 (46%), Gaps = 121/978 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           V+ +R  F+ FF++ GH  +PSS+++P NDPTL+FTN+GM  FKN+F G   P       
Sbjct: 10  VNRVRQEFVSFFEQRGHTFVPSSAVVPHNDPTLLFTNAGMNQFKNLFLGTADPNTDFGRL 69

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 Q C+RAGGKHNDLD+VGR   HHTFFEMLG++SFG YFK  AI  +W+LLT+ +
Sbjct: 70  TRAVNSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKREAILWSWELLTEVY 129

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY T ++         DEE+ +LW ++  L A ++I     DNFW M + GPCG
Sbjct: 130 KLPKDRLYATYFEGDPANGIEADEESKQLWLQL--LPASRVIAGNAKDNFWEMGDVGPCG 187

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI FD+           +++    +E+WNLVFMQFE++       LPKM +DTGMGL
Sbjct: 188 PCSEIHFDRI-GGRDAADLVNKDDPMVLEVWNLVFMQFERRAGGVIVPLPKMHVDTGMGL 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--------YEGNNIVNHRVIVDHLRSS 282
           ER+ ++LQ   +NYD D +  L    ++VTG +           +  V +R + DH+R  
Sbjct: 247 ERLTSILQGADSNYDTDAWTPLFDTIQKVTGFEKSYAEVRHDTCDATVAYRAVADHIRCL 306

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  +ADG +P + GRG+VLRRI+RRA+ Y    LG        L+ ++ + +G  +  + 
Sbjct: 307 TVALADGAMPDSVGRGFVLRRIIRRAVRYGVQFLGAKVGFFHQLVDSVVSSLGPFFKHIQ 366

Query: 342 QAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I+  L  E+  F +T + GL   +  ++    + +++G+ AF L+D +G P+D
Sbjct: 367 EPRTVQRIKGVLADEETSFARTWETGLKHFNKAVAEAV-NNVISGENAFILHDRYGFPVD 425

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   +L  +    +D+  F+  +     +A   S G  +     I     E+  A     
Sbjct: 426 LTS-LLAEKANMSVDLEGFHATM-----KASQLSSGRVAAAKTFIDVHQLEELKA----- 474

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----QKVE 512
                                         + VKAI   + G  V+  +       + + 
Sbjct: 475 ------------GGVSPTDDSAKYTWKKHVAEVKAIFDKKSGSFVDVLLPDSEMGPEDIG 522

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER------GILR 566
           ++ D T FYAEAGGQ+ DTGC +     +          G  VH   +          + 
Sbjct: 523 IILDVTNFYAEAGGQIYDTGCIVAAPDAIFDVRKVYNVGGYIVHVGGMRSVEDGAAAPIP 582

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-------LGSHVSQNGSCITPDGLRF 619
              S+ L +DY+ R  ++ NH++TH+L+  L  +           V+Q GS +TP+ LRF
Sbjct: 583 VTASVELQVDYERRLPIAANHTSTHILNWCLRRVLEEEAKDNFMEVNQKGSLVTPEMLRF 642

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           D +++  ++  +L  +E  +N II Q L      I     +  +G   + G KY D V V
Sbjct: 643 DFSYNNKVSLEDLIKVEKLINQIIQQGLEVYRKEIALDAASRIAGLRHMFGEKYPDPVSV 702

Query: 679 VSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           +SV             E+   +S+  CGGTH+S+T +  L  I+SE S+  GIRR+   T
Sbjct: 703 ISVGVPVEKLIAEPESEEWRAYSTEFCGGTHLSNTQDAQLAVILSEESLMKGIRRMVVAT 762

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGR-----------------VEE-IWEEYR- 768
              AR    G     +     +     + V +                 V+  + EE   
Sbjct: 763 RDAARKAQEGGKALQQEYREIMSRPASDAVAKSLSVLNKKVGDSAIPLVVKNTLREEIDG 822

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIA-----------DVNFMSHIIS-EVDSKELKSVMDAL 816
            ++ +    K Q         +                 + H+     D + L++  D  
Sbjct: 823 SIKNVLGALKAQAAQMKEKATEAGRAAAEAYDASAGPLLVRHLTDTGADREALQAYADGF 882

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            K +   + + +  S E KA  L+ +    +  + +AV  A+ +      G GGG+P  A
Sbjct: 883 SKAVSGDVGLFLVGSDESKALALVSLPPAFVAKKLDAVSWAKTAV-----GKGGGKPSAA 937

Query: 876 QSGGPNGNKADQAIAGVA 893
           QSG P      Q +    
Sbjct: 938 QSGFP-AANTTQVLQKAE 954


>gi|114663435|ref|XP_511075.2| PREDICTED: alanyl-tRNA synthetase isoform 3 [Pan troglodytes]
          Length = 894

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/859 (33%), Positives = 429/859 (49%), Gaps = 75/859 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++  +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMGLELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNAIRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDI-YAIEELRARG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            ++   S                 +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 478 LEVTDDSPK----YNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N++I     V T+           G  A+    Y D VRVVS+             
Sbjct: 653 EEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 713 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESMKK 772

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
            L+            +V+      + +Q   A     L                + +I +
Sbjct: 773 CLSVM--------EAKVKAQTAPNKDVQREIADLGEALA---------------TAVIPQ 809

Query: 804 VDSKELKSVMDALQKKIQS 822
               EL+  + +L+K +  
Sbjct: 810 WQKDELRETLKSLKKVMDD 828


>gi|313221903|emb|CBY38956.1| unnamed protein product [Oikopleura dioica]
          Length = 934

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/962 (30%), Positives = 440/962 (45%), Gaps = 107/962 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + +R  FL+FF++  H  + SSS IP +DPTL+F N+GM  FK+IF G   P      
Sbjct: 6   TANEVRQQFLDFFKEREHPYVHSSSTIPHDDPTLLFANAGMNQFKSIFVGTIDPSSPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
             +    QKC+RAGGKHNDLD+VG+ + HHTFFEMLG++SFG YFK+ AIQ ++DLL K 
Sbjct: 66  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGSWSFGDYFKKEAIQWSFDLLNKV 125

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY T ++         D EA + W K   L AD+I+     DNFW M +TGPC
Sbjct: 126 WGIPADRLYATYFEGNPEEGLEPDNEAREEWLKY--LPADQILPGNAKDNFWEMGDTGPC 183

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           + +    +EIWNLVFMQ+++Q  +    LP  S+DTGMG
Sbjct: 184 GPCSELHYDRI-GGRNASSLVNMDDPDVLEIWNLVFMQYDRQADKSLISLPAKSVDTGMG 242

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280
           LER+ +VLQ+K  NYD D+F    +  E +TG +          +    + +RV+ DH R
Sbjct: 243 LERVVSVLQDKRANYDTDMFSPYFKKIEDLTGTRAYTGLFGAEDKDGVDMAYRVLADHAR 302

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  +ADG  P N GRGYVLRRI+RRA+ Y    L       + L+  +   +G A+PE
Sbjct: 303 TLSIALADGGRPDNVGRGYVLRRILRRAIRYGHEKLKMKVDDFVALVDVVVESLGDAFPE 362

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +     +E L+ E  +F KTLDRG  +L+  +  L   + L GDVA+ LYDT+G PLD
Sbjct: 363 LKKDPESTKEILKEEWIQFMKTLDRGQKILERKIKQLNLTDRLPGDVAWLLYDTYGFPLD 422

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I     L  +    F +  ++   R++                   +    T    
Sbjct: 423 LTTLIAEEHNLT-LSCEEFEEERQKAIERSKGA-----------------DGVATTD--- 461

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                        +            N + + V A+    E  +E  S + V +V D+T 
Sbjct: 462 ---------DSHKQNYEANSAGEYTFNSIKAKVVALRFNKEFHQECESCE-VGIVLDKTN 511

Query: 520 FYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FYAE GGQ+ D G     +    +      +    +V H     G L     + L ID +
Sbjct: 512 FYAEQGGQIYDLGYFSRENDDDFEFNVKNVQVRAGYVLHVGTLVGKLSVGDEINLNIDTE 571

Query: 579 NRRQLSINHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            R  +  NH+ TH+L+  L  +LG     Q GS + P+ LRFD T    +  A++K +E+
Sbjct: 572 RRVNIMPNHTGTHVLNFGLRCVLGEGEADQKGSLVAPERLRFDFTAGGALKPAQIKQVEE 631

Query: 638 NVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
             N++I +   V  ++    +     G  A+    Y D VRVVS+               
Sbjct: 632 ICNEVITRGGAVHCQVSPLAQSKAIQGLRAMFDETYPDPVRVVSIGVPVNELLENPTSGA 691

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S   CGGTH+        L I +E +I  GIRR+ A+TG  A           K +
Sbjct: 692 ADKTSVEFCGGTHLRDISHARKLIITAEEAISKGIRRMIAVTGAEAEKADRQAQRLEKDV 751

Query: 746 ASFLKVSQGNVVG--------------------------RVEEIWEEYRKLQLIHAKRKL 779
            + LK      +                           +  E+ +  +K ++   + + 
Sbjct: 752 -NELKAEVKEAIKAKNTAEANQRAISLGKTIEVAPISAWKRAELVDAVKKSKMEIVQYEQ 810

Query: 780 QLNVEDLSCHK---IADV--NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS-KE 833
           ++   ++   K     DV    +  + +  ++K L  ++    KK     ++L       
Sbjct: 811 KVEEYEIQTEKRIDAGDVAEPEVLLLDAGSNNKVLNEILKLYAKKSPKSHVLLFSADHTA 870

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           KK   L    +       A +     + ++  G GGG+   AQ+ G N ++   A+A   
Sbjct: 871 KKVLCLAQTPKGST--LKANEWVSSISPLI-DGRGGGKDVQAQASGKNVSELKGALAKAK 927

Query: 894 SF 895
            F
Sbjct: 928 EF 929


>gi|289810694|ref|ZP_06541323.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 603

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/637 (46%), Positives = 404/637 (63%), Gaps = 44/637 (6%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGG 72
           +F    GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGG
Sbjct: 1   DFSYSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGG 60

Query: 73  KHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVY 130
           KHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F L + RL++TVY
Sbjct: 61  KHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFALPKERLWVTVY 120

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECI 183
           + D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I
Sbjct: 121 ETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHI 180

Query: 184 PGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +
Sbjct: 181 WGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+LP+NE RGYVLR
Sbjct: 241 NYDIDLFRTLIEAVAKVTGSTDLGNK--SLRVIADHIRSCAFLVADGVLPSNENRGYVLR 298

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L++E+E+F +TL
Sbjct: 299 RIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTL 358

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+
Sbjct: 359 ERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAM 416

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EEQR RAR              + ++     A++F GYD L                   
Sbjct: 417 EEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE------------------ 452

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G   G G    
Sbjct: 453 -----LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFA 507

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D QK       H   +  G L+   ++   +D   R ++ +NHSATHL+H AL  +LG
Sbjct: 508 VDDTQKYG-QAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           +HV+Q GS ++   LRFD +H++ +  +E++ +ED V
Sbjct: 567 THVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLV 603


>gi|313229137|emb|CBY23722.1| unnamed protein product [Oikopleura dioica]
          Length = 941

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 290/970 (29%), Positives = 440/970 (45%), Gaps = 116/970 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + +R  FL+FF++  H  + SSS IP +DPTL+F N+GM  FK+IF G   P      
Sbjct: 6   TANEVRQQFLDFFKELEHPYVHSSSTIPHDDPTLLFANAGMNQFKSIFVGTIDPSSPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
             +    QKC+RAGGKHNDLD+VG+ + HHTFFEMLG++SFG YFK+ AIQ +++LL K 
Sbjct: 66  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGSWSFGDYFKKEAIQWSFELLNKV 125

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY T ++         D EA + W K   L AD+I+     DNFW M +TGPC
Sbjct: 126 WGIPADRLYATYFEGNPEEGLEPDNEAREEWLKY--LPADQILPGNAKDNFWEMGDTGPC 183

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           + +    +EIWNLVFMQ+++Q  +    LP  S+DTGMG
Sbjct: 184 GPCSELHYDRI-GGRNASSLVNMDDPDVLEIWNLVFMQYDRQADKSLISLPAKSVDTGMG 242

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280
           LER+ +VLQ+K  NYD D+F    +  E +TG +          +    + +RV+ DH R
Sbjct: 243 LERVVSVLQDKRANYDTDMFSPYFKKIEDLTGTRAYTGLFGAEDKDGVDMAYRVLADHAR 302

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  +ADG  P N GRGYVLRRI+RRA+ Y    L       + L+  +   +G A+PE
Sbjct: 303 TLSIALADGGRPDNVGRGYVLRRILRRAIRYGHEKLNMKVDDFVALVDVVVESLGDAFPE 362

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +     +E L+ E  +F KTLDRG  +L+  +  L   + L GDVA+ LYDT+G PLD
Sbjct: 363 LKKDPESTKEILKEEWIQFMKTLDRGQKILERKIKQLNLTDRLPGDVAWLLYDTYGFPLD 422

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I     L  +    F +  ++   R++                   +    T    
Sbjct: 423 LTTLIAEEHNLT-LSCEEFEEERQKAIERSKGA-----------------DGVATTD--- 461

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                        +            N + + V A+    E  +E  S + V +V D+T 
Sbjct: 462 ---------DSHKQNYEANSAGEYTFNSIKAKVVALRFNKEFHQECESCE-VGIVLDKTN 511

Query: 520 FYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FYAE GGQ+ D G     +    +      +    +V H     G L     + L ID +
Sbjct: 512 FYAEQGGQIYDLGYFSRENDDDFEFNVKNVQVRAGYVLHVGTLVGKLSVGDEINLNIDTE 571

Query: 579 NRRQLSINHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            R  +  NH+ TH+L+  L  +LG     Q GS + P+ LRFD T    +  A++K +E+
Sbjct: 572 RRVNIMPNHTGTHVLNFGLRCVLGEGEADQKGSLVAPERLRFDFTAGGALKPAQIKQVEE 631

Query: 638 NVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
             N++I +   V  ++    +     G  A+    Y D VRVVS+               
Sbjct: 632 ICNEVITRGGAVHCQVSPLAQSKAIQGLRAMFDETYPDPVRVVSIGVPVNELLENPTSGA 691

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S   CGGTH+        L I +E +I  GIRR+ A+TG  A           K  
Sbjct: 692 ADKTSVEFCGGTHLRDISHARKLIITAEEAISKGIRRVIAVTGAEAEKADRQAQRLAK-- 749

Query: 746 ASFLKVS-----QGNVVGRVE-----------------------------EIWEEYRKLQ 771
           A+ LK       +  V   ++                             E+ +  +K +
Sbjct: 750 ANQLKEKDVNELKAEVKEAIKAKNTAEANQRAISLGKTIEVAPISAWKRAELVDAVKKSK 809

Query: 772 LIHAKRKLQLNVEDLSCHK---IADV--NFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   + + ++    +   K     DV    +  + +  ++K L  ++    KK     ++
Sbjct: 810 MEIVQYEQKVEEYGIQTEKRIDAGDVAEPEVLLLDAGSNNKVLNEILKLYAKKSPKSHVL 869

Query: 827 LVGIS-KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L       KK   L    +       A +     + ++  G GGG+   AQ+ G N +  
Sbjct: 870 LFSADHTAKKVLCLAQTPKGST--LKANEWVSSISPLI-DGRGGGKDVQAQASGKNVSGL 926

Query: 886 DQAIAGVASF 895
             A+A    F
Sbjct: 927 KGALAKAKEF 936


>gi|296126160|ref|YP_003633412.1| alanyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296017976|gb|ADG71213.1| alanyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 857

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 298/885 (33%), Positives = 467/885 (52%), Gaps = 59/885 (6%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
           H +  SSSLIP +DPTL+FT +GM+ FK  + G +K  Y  V T+QKC R      DL+N
Sbjct: 19  HVIEKSSSLIPIDDPTLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRLS----DLEN 74

Query: 80  VGRTNRHHTFFEMLGNFSF-GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138
           +G+T RHHTFFEM GNF F G YFK+ AI+ AW+  T+   L   R+Y+++Y++D++AFK
Sbjct: 75  IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPIERIYVSIYEKDDDAFK 134

Query: 139 LWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195
           +W +  G+  +KI+R+   DNFW    ++G CGPCSE++ D GE    G P      + E
Sbjct: 135 IWNEHIGIPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           RY+E WNLVF +F Q        L  + IDTGMGLER+  ++Q   +NY  D+ K ++ A
Sbjct: 195 RYLEFWNLVFNEFFQDTDGNLSPLQNVGIDTGMGLERLCYIMQGVESNYQTDVMKPIVDA 254

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
             +   +KYE  N     +I DHLR+  F++A+G +P+NEGRGYVLRR++RRA+  +  L
Sbjct: 255 IIKKLNVKYEDKNKTKINLIADHLRALVFVLAEGCVPSNEGRGYVLRRLLRRALKTSSDL 314

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G+    +  L  A+       Y  L + +  I+  L+ E+ +F  T+  G+  L  V+  
Sbjct: 315 GHKGAFLNELTGAVIDVYKDIYDYLPKEEENIKRILKDEENKFLNTISAGMNKLYSVMED 374

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
               +++ G  AF L+DT+GLP DI ++     G   +D   F +A+EEQ+ R+R     
Sbjct: 375 NKDSKVIKGSDAFMLFDTYGLPFDITEEEANDHGFT-VDRAGFEEAMEEQKKRSRGTGED 433

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
             S       F        T+++G                   +   +LTNGV + V ++
Sbjct: 434 KKSKFGYVANFD-------TKYVG-------------------EDLNNLTNGVKAKVISV 467

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
                +           +V D +PFY E GGQ+GD G       +       +K E   +
Sbjct: 468 YNDNTV-----------IVTDVSPFYGEMGGQVGDNGYIETSDKQTIKVTDTQKKENTII 516

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H         +    + L ++   R  +  NH+ATH+L   L   LG+HV+Q GS +  D
Sbjct: 517 HILENNNHSFKEGEEITLFVNADRRMAIRKNHTATHILQRVLELTLGNHVNQAGSYVCED 576

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
            LRFD TH   I+   L +IE+ VN+++ +++P V + M++E+AI+SGA AL G KY D 
Sbjct: 577 YLRFDFTHPDSISEETLLNIENKVNEVVFKSMPAVIKYMSKEEAISSGAKALFGEKYPDT 636

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR++ +        S  LCGG+H+++T E+   +IVSE S  +G+RRIEAITG +A +  
Sbjct: 637 VRILDIGD----GFSVELCGGSHLTNTSEVGYFHIVSEGSAASGVRRIEAITGLKAANEA 692

Query: 736 MGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED---LSCHKI 791
                K+K+LA  L       +  R E +  E +KLQ    + K           +   +
Sbjct: 693 TKLFSKVKNLAHILNASKIEEITIRAENLQNEVKKLQKDIKQLKTSGASVTSFMDNYEDL 752

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DR 849
             + F +   +E D KE++   D ++++++  I +++    +   S+L+ +T   +   +
Sbjct: 753 GGIRFYNLEFNE-DIKEVRLYADTIKERVKDSIAVMIS-KTDSSNSILVQLTGSAVKEKK 810

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +A ++ +   K   GG GGG+   AQ    N +KA + I  + S
Sbjct: 811 LSANNIIKDIIKT-AGGRGGGKDTFAQGSIENIDKAKEEINKLKS 854


>gi|300870855|ref|YP_003785726.1| alanyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300688554|gb|ADK31225.1| alanyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 864

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 308/887 (34%), Positives = 469/887 (52%), Gaps = 51/887 (5%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
           H +  SSSLIP +DP+L+FT +GM+ FK  + G +K  Y  V T+QKC R      DL+N
Sbjct: 19  HAIEKSSSLIPIDDPSLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRLS----DLEN 74

Query: 80  VGRTNRHHTFFEMLGNFSF-GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138
           +G+T RHHTFFEM GNF F G YFK+ AI+ AW+  T+   L   R+Y+++Y++D++AFK
Sbjct: 75  IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPVERIYVSIYEKDDDAFK 134

Query: 139 LWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195
           +W +  G+  +KI+R+   DNFW    ++G CGPCSE++ D GE    G P      + E
Sbjct: 135 IWNEHIGIPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           RY+E WNLVF +F Q        L  + IDTGMGLER+  ++Q   +NY  D+ K ++ A
Sbjct: 195 RYLEFWNLVFNEFFQDVDGNLTPLKNVGIDTGMGLERLCYIMQGVESNYQTDVMKPIVDA 254

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                 +KYEGNN     ++ DHLR+  F++A+G  P+NEGRGYVLRR++RRA+  A  L
Sbjct: 255 ILNKLNVKYEGNNKTKINLLADHLRALVFVLAEGCKPSNEGRGYVLRRLLRRALKTANDL 314

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G+    +  L  A+       Y  L + +  I++ L+ E+ +F  T+  G+  L  V+  
Sbjct: 315 GHKGAFLNELTSAVINVYKDIYDYLPKEEENIKKILKEEENKFLSTISAGMNKLYNVMEE 374

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
             + ++++G  AF L+DT+GLP DI ++     G   +D   F  A+EEQ+ R+R     
Sbjct: 375 NKESKVISGKDAFMLFDTYGLPFDITEEEANDHGFT-VDKKGFEDAMEEQKKRSRG---- 429

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
                                  G D      F++        +    L NG+ S + A+
Sbjct: 430 ----------------------TGEDKKSKFGFVENYETKYVGEDRDSLINGIKSKIVAL 467

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
            + GE  E A S   V V+ + +PFY E GGQ+GD G               +K E   +
Sbjct: 468 YENGEKKESASS-SNVAVITESSPFYGEMGGQVGDNGFIEISSGEKLKVLDTQKKENTII 526

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H        L+    + L +++  R  +  NH+ATH+L   L   LG+H++Q GS +  D
Sbjct: 527 HIVDCGNKTLKVGEEIKLIVNFDRRSAIRKNHTATHILQKVLELTLGNHINQAGSFVCED 586

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
            LRFD TH   I    L +IE+ VN+I+ +++P V + M +E+AIASGA AL G KY D 
Sbjct: 587 YLRFDFTHPDSINEETLINIENKVNEIVFKSMPAVIKYMPKEEAIASGAKALFGEKYPDT 646

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR++ +        S  LCGG+H+++T E+   +IVSE S+ +G+RRIEAITG  A    
Sbjct: 647 VRILDIGE----GFSVELCGGSHLTNTSEVGYFHIVSEGSVASGVRRIEAITGLNAAREA 702

Query: 736 MGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL---SCHKI 791
                K+KSL+  L  +    +  R E +  E +KLQ  + + K   +       +C  +
Sbjct: 703 TNLFNKVKSLSHILNANKIDELTTRAENLQTEIKKLQKENKQLKTSGSSSKAFIDNCEDL 762

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
             + F +    E D K+++   D ++++++  I  ++  +     S+++ VT   L   N
Sbjct: 763 NGIKFYNLEFDE-DIKDIRLYADTIKERVKDSIAFMISKTNN---SIIVQVTGKALKEKN 818

Query: 852 --AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A  L +      GG G GG+   AQ    N  KA +AI  + S L
Sbjct: 819 ILANSLIKDIIAAAGGRG-GGKDSFAQGSIENIEKAKEAINKIKSSL 864


>gi|322491846|emb|CBZ27119.1| putative alanyl-tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 962

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 271/982 (27%), Positives = 455/982 (46%), Gaps = 121/982 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           VS +R  F+++F+K GH  +P S + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQEFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++ D+        EA +LW +   L   +I+     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDKNNGLNPDLEAKELWAQF--LPESQIVPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           +++    +EIWNLVFMQFE++       LP+  IDTGMGL
Sbjct: 186 PCSEVHFDRI-GGRNAASFVNKDDPMVVEIWNLVFMQFERRADGFLTPLPQKHIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLRS 281
           ER+ ++LQ   +NYD D +  L +A +  TG       I N         +RV+ DH+R 
Sbjct: 245 ERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNNPDSDALVAYRVVADHIRC 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  + DG++P + GRG+VLRRI+RRA+ Y    LG        L+ ++CT +G  +P L
Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFFPHL 364

Query: 341 IQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396
            + + +  I+  L  E++ F KT + GL   +  ++       ++++G  AF L+D +G 
Sbjct: 365 KEPRNIQRIKAVLADEEQSFAKTWEMGLRHFNHAVNECRANNSKVISGSEAFVLHDRYGF 424

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +    G+  +D+  FN  +      ++  +  + +  T    + L+E      
Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNAEM----KESKVSAGRVAATKTFIDAYQLEE------ 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509
                       +K             +    +  V AI   +  + +     G     +
Sbjct: 474 ------------LKTRGIPQTDDVAKYVWEDSTGDVLAIFDKKNSKFISLLEPGNDLGAE 521

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG---ILR 566
            V ++ + T FYAE+GGQ+ DTG  +     +          G  VH   + +     + 
Sbjct: 522 GVGIILNTTNFYAESGGQVYDTGRLVAGSDSVFEVKKVYNVAGYVVHVGSLSKDSASPIP 581

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------LGSHVSQNGSCITPDGLRFD 620
               + + +DY+ R  ++ NH+ TH L+  L  +        + V Q GS +T + LRFD
Sbjct: 582 LSAVVQMQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRFD 641

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            ++S  +++ EL  +E  +N+ I   LP     +     +  +G   + G KY D V V+
Sbjct: 642 FSYSTKLSNEELVRVEQLLNEKIQAGLPVYREEVPLEAASKINGLRQMFGEKYPDPVSVI 701

Query: 680 SVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           S+              +   ++   CGGTH+ +  E     I+SE ++  G+RR+   T 
Sbjct: 702 SIGTPINEMLTNPEKEEWRDYAVEFCGGTHLKNLKEADKAVIISEEALMKGVRRVVVATK 761

Query: 729 QRA-------------RSHLMGQDEKLKSLASF---------------LKVS-QGNVVGR 759
             A                LM ++    S+ +                LK   + N+   
Sbjct: 762 SEADKVIKAGTELKGQYDELMQKEATATSVKALSVLNKKVGDSCIPLVLKNEMRDNIDAA 821

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQ 817
           ++ +    +        +  +      + +  A   F+ H ++    + + L++  D   
Sbjct: 822 IKRMNAILKSQAAEARDKAAEAGKALGASYDAAAAPFLVHQMTEFGAEREALQAFSDGFS 881

Query: 818 KKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             +   + + L+G   EK  +++ +    +  + +AV  A+ S      G GGG+P  AQ
Sbjct: 882 STVSGPVGVFLIGSDDEKALAIVSMPAAFVEKKMSAVAWAKSSI-----GKGGGKPSAAQ 936

Query: 877 SG--GPNGNKAD-QAIAGVASF 895
           SG    +   A  +A+      
Sbjct: 937 SGLPAKDVAAAATKAMEEAERM 958


>gi|294053724|ref|YP_003547382.1| alanyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293613057|gb|ADE53212.1| alanyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 941

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 303/972 (31%), Positives = 459/972 (47%), Gaps = 134/972 (13%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--Q 59
              S IR +FL+FF+   H  +PS+SL+P + P L+FTN+GM  F   F G EK  +   
Sbjct: 5   MKSSEIRQSFLDFFKSKQHTTVPSASLMPQS-PGLLFTNAGMNQFVPYFLGTEKAPFDPP 63

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFG YFK+ AI+ +W+L+ + + 
Sbjct: 64  RAADTQKCIRAGGKHNDLEDVGYDTYHHTFFEMLGNWSFGNYFKQEAIEWSWELIVETWG 123

Query: 120 LDQRRLYITVYDE--------DEEAFKLWK---KISGLSAD-KIIRITTNDNFWSMAETG 167
           +   RLY TVY          D+EA+ +W    + +GL     II     DNFW M ETG
Sbjct: 124 VPANRLYATVYAPSEGDPSAFDQEAYDIWSVLFEKAGLDPKVHIINGNVKDNFWMMGETG 183

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSE+  D            + + +  IEIWNLVF+Q+  +       LP   +DTG
Sbjct: 184 PCGPCSELHVDLTPKGDSQGKLVNMDSDLCIEIWNLVFIQYNAEADGSFRDLPAKHVDTG 243

Query: 228 MGLERMATVLQE---------KTNNYDIDLFKHLIQASEQVTGMKYE------------- 265
           MG ER  +++Q          K  NY  D+F+ + +  EQ++G  Y+             
Sbjct: 244 MGFERACSLIQNTKGFTDFSEKPTNYATDVFQPIFRTLEQLSGKTYKDIYPEAADCDKSK 303

Query: 266 ----GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--E 319
                   +  RVI DH+R+ SF +ADGIL  N GR YVLRRI+RRA+ Y R LG++  E
Sbjct: 304 LSQEMKEAIAFRVIADHIRTLSFSLADGILLGNTGRNYVLRRILRRAVRYGRTLGFSSGE 363

Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379
             +  L+  L  E GS +PEL +    ++E L+ E+  F +TLDRGL + +   +     
Sbjct: 364 TFLPKLVDTLVEEFGSVFPELKERAKAVKENLQREEASFNETLDRGLAMFEDEAAKTKGS 423

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
             L+G+ AFKLYDT+G P+D+ Q +   RG   +D+ +F + +E QR RARA        
Sbjct: 424 --LDGEFAFKLYDTYGFPIDLTQLLCAERG-IEVDMETFEKHMEAQRERARAARTQQLVR 480

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
             +           +T+F G++                           ++ V  +    
Sbjct: 481 AAD------IATEASTEFTGFEEDES-----------------------TAKVLELH--- 508

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
                      + V+ D+TPFY E GGQLGD G    +G    +T VQ+ +      H++
Sbjct: 509 ------TQDDALLVITDRTPFYVEMGGQLGDQGTLTVNGTTYPVTAVQQLSAAR--AHSL 560

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                ++    + L +D   RR +  +H+ATHLLH AL  ++ +  +Q GS ++   LRF
Sbjct: 561 PTDAAVKVGDEVTLALDPTRRRPIEGHHTATHLLHWALHEVVSTDAAQQGSMVSRTRLRF 620

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRV 678
           D   S  ++  +L +IE  VN  I    PV  + +   D           G KY D VRV
Sbjct: 621 DFN-SSALSQDQLDAIETKVNACIEAGDPVSWKEVPHTDVKDRKDVQQFFGDKYGDLVRV 679

Query: 679 VSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           V +  +      +S  LCGGTHV +T +I L  I SE +I +GIRRIEA+ G  A     
Sbjct: 680 VQIGGQPEQLDGYSMELCGGTHVRNTKDIGLFKIKSEGAIASGIRRIEAVCGTAAYDWTR 739

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEI-WEEYR---------------KLQLIHAKRKLQ 780
              EK       L+     +  ++E +  +  +                 +  +   K  
Sbjct: 740 SVVEKANIEREELRTKLEGINQKLEALGADSIKYPQFPHIMIGMLAEGNFEQRNKVFKDT 799

Query: 781 LN-VEDLSCHKIA------------------------DVNFMSHIISEVDSKELKSVMDA 815
           L  V+ L    +                         D++    + +E  +  L+ +++ 
Sbjct: 800 LAHVQGLKEATVEADKALKKAQAAGAAKMANAILAEQDLSGNLVLKAEGPAALLQELING 859

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHM 874
           L+++  +G    + +   ++  +  +  E    +   A  L +  A  + GG GGG+P M
Sbjct: 860 LKQQQFAGAAFFI-VDDGERLHLGALCGETAKGNGLMAGKLIQQLAP-IAGGKGGGKPDM 917

Query: 875 AQSGGPNGNKAD 886
           A+   P  +KAD
Sbjct: 918 ARGAAPERDKAD 929


>gi|157869507|ref|XP_001683305.1| alanyl-tRNA synthetase [Leishmania major strain Friedlin]
 gi|68224189|emb|CAJ04856.1| putative alanyl-tRNA synthetase [Leishmania major strain Friedlin]
          Length = 962

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 274/962 (28%), Positives = 455/962 (47%), Gaps = 118/962 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           VS +R  F+++F+K GH  +PSS + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQEFVDYFKKQGHTFVPSSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++ DE        EA +LW ++  L   +I+     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDESNGLDPDLEAKELWGQL--LPESQIVPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           +++    +EIWNLVFMQFE++       LP+  IDTGMGL
Sbjct: 186 PCSEVHFDRI-GRRNAASLVNKDDPMVVEIWNLVFMQFERRAGGFLTPLPQKHIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLRS 281
           ER+ ++LQ   +NYD D +  L +A +  TG       I N         +RV+ DH+R 
Sbjct: 245 ERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNDPDSDALVAYRVVADHIRC 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  + DG++P + GRG+VLRRI+RRA+ Y    LG        L+ ++CT +G  +P L
Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFFPHL 364

Query: 341 IQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396
            + + +  I+  L  E++ F KT + GL   +  ++       ++++G  AF L+D +G 
Sbjct: 365 KEPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAVNECRANSSKVISGSEAFVLHDRYGF 424

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +    G+  +D+  FN  +      ++  +  + +  T    + L+E      
Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNTEM----KESKVSAGRVAATKTFIDAYQLEE------ 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509
                       +K             +    +  V AI   +  + +     G     +
Sbjct: 474 ------------LKTRGIPQTNDAAKYVWEDYTGDVLAIFDKKNSKFISLLEPGNDLGAE 521

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI---VERGILR 566
            V ++   T FYAE+GGQ+ DTG  +     +          G  VH           + 
Sbjct: 522 GVGIILSTTNFYAESGGQVYDTGRLVAASDSVFEVKKAYNVAGYVVHVGNLSKYSASPIP 581

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------LGSHVSQNGSCITPDGLRFD 620
           +   + L +DY+ R  ++ NH+ TH L+  L  +        + V Q GS +T + LRFD
Sbjct: 582 SSAVVQLQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRFD 641

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQN-LPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            +++  +++ +L  +E  +N+ I    L     +     +  +G   + G KY D V V+
Sbjct: 642 FSYNTKLSNEDLVRVEQLLNEKIQAGLLVYREEVPLEAASKINGLRQMFGEKYPDPVSVI 701

Query: 680 SVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           S+              +   ++   CGGTH+ +  E     I+SE ++  G+RR+   T 
Sbjct: 702 SIGTPINEMLANPEKEEWRDYAVEFCGGTHLKNLKEAEKAVIISEEALMKGVRRVVVATR 761

Query: 729 QRARSHL-------MGQDEKLKSLASFLKVSQGNVVGR-VEE------IWEEYRK----- 769
             A   +          DE +K  A+   V   +V+ + V +      +  E R+     
Sbjct: 762 LEADKVIKAGAELKRQYDELMKKEATATSVKALSVLNKNVGDSCIPLVLKNEMRENIDAA 821

Query: 770 LQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIIS--EVDSKELKSVMDALQ 817
           ++ ++A  K Q         +               F+ H ++    + + L++  D   
Sbjct: 822 IKRMNATLKSQAAEARDKAAEAGKCLGASYDAAAAPFLVHQMTEFGAEREALQAFSDGFS 881

Query: 818 KKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             +   + + L+G   EK  +++ +    +  + +AV  A+ S      G GGG+P+ AQ
Sbjct: 882 STVSGPVGVFLIGSDNEKALAIVSMPAAFVEKKMSAVAWAKSSI-----GKGGGKPNAAQ 936

Query: 877 SG 878
           SG
Sbjct: 937 SG 938


>gi|146086823|ref|XP_001465654.1| alanyl-tRNA synthetase [Leishmania infantum JPCM5]
 gi|134069753|emb|CAM68079.1| putative alanyl-tRNA synthetase [Leishmania infantum JPCM5]
 gi|322499108|emb|CBZ34180.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 962

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 269/962 (27%), Positives = 452/962 (46%), Gaps = 118/962 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           VS +R  F+++F+K GH  +PSS + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQEFVDYFKKQGHTFVPSSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++ DE        EA +LW +   L   +I+     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDENNGLDPDLEAKELWGQF--LPESQIVPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           +++    +EIWNLVFMQFE++       LP+  IDTGMGL
Sbjct: 186 PCSEVHFDRI-GGRNAASLVNKDDPMVVEIWNLVFMQFERRAGGSLTPLPQKHIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLRS 281
           ER+ ++LQ   +NYD D +  L +A +  TG       I N         +RV+ DH+R 
Sbjct: 245 ERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNDPDSDALVAYRVVADHIRC 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  + DG++P + GRG+VLRRI+RRA+ Y    LG        L+ ++CT +G  +P L
Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFFPHL 364

Query: 341 IQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396
            + + +  I+  L  E++ F KT + GL   +  ++       ++++G  AF L+D +G 
Sbjct: 365 KEPRNIQRIKTVLADEEQSFAKTWEMGLKHFNHAVNECRANNSKVISGSEAFVLHDRYGF 424

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +    G+  +D+  FN  +      ++  +  + +  T    + L+E      
Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNAEM----KESKVSAGRVAATKTFIDAYQLEE------ 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509
                       +K             +    +  + AI   +  + +     G     +
Sbjct: 474 ------------LKTRGIPQTDDAAKYVWEDSTGDLLAIFDKKNSKFISLLEPGNDLGAE 521

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG---ILR 566
            V ++   T FYAE+GGQ+ DTG  +     +          G  VH   + +     + 
Sbjct: 522 GVGIILSTTNFYAESGGQVYDTGRLVAASDSVFEVKKVYNVAGYVVHVGNLSKDSASSIP 581

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------LGSHVSQNGSCITPDGLRFD 620
           +   + L +DY+ R  ++ NH+ TH L+  L  +        + V Q GS +T + LRFD
Sbjct: 582 SSAVVQLQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRFD 641

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            +++  +++ +L  +E  +N+ I   LP     +     +  +G   + G KY D V V+
Sbjct: 642 FSYNTKLSNEDLVRVERLLNEKIQAGLPVYREEVPLEAASKINGLRHMFGEKYPDPVSVI 701

Query: 680 SVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           S+              +   ++   CGGTH+ +  E     I+SE ++  G+RR+   T 
Sbjct: 702 SIGTPINEMLANPEKEEWRDYAVEFCGGTHLKNLKEAEKAVIISEEALMKGVRRVVVATK 761

Query: 729 QRA-------------RSHLMGQDEKLKSLASF---------------LKVS-QGNVVGR 759
             A                LM ++    S+ +                LK   + N+   
Sbjct: 762 SEADKVIKAGAVLKGQYDELMKKEATATSVKALSVLNKKVGDSCIPLVLKNEMRDNIDAA 821

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQ 817
           ++ +    +        +  +      + +  A   F+ H ++    + + L++  D   
Sbjct: 822 IKRMNATLKSQAAEARDKAAEAGKALGASYDAAAAPFLVHQMTEFGAEREALQAFSDGFT 881

Query: 818 KKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             +   + + L+G   EK  +++ +    +  + +AV  A+ S      G GGG+P+ AQ
Sbjct: 882 STVSGPVGVFLIGSDDEKALAIVSMPAAFVERKMSAVAWAKSSI-----GKGGGKPNAAQ 936

Query: 877 SG 878
           SG
Sbjct: 937 SG 938


>gi|297737925|emb|CBI27126.3| unnamed protein product [Vitis vinifera]
          Length = 1026

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 298/1029 (28%), Positives = 443/1029 (43%), Gaps = 158/1029 (15%)

Query: 4    VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
             + +R TF+ FF+   H    SS ++P NDPTL+F N+GM  FK IF G   P       
Sbjct: 13   ANKVRDTFINFFESKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 72

Query: 59   QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK  
Sbjct: 73   TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKAK 132

Query: 117  --EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
               + L   R+Y T +  DE        EA  +W K   L    ++     DNFW M +T
Sbjct: 133  NLVYKLPTDRIYATYFGGDEKSGLSPDTEARDMWLKF--LPPGHVLPFGCKDNFWEMGDT 190

Query: 167  GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
            GPCGPC+EI FD+           + +    IEIWNLVF+QF +++      LP   +DT
Sbjct: 191  GPCGPCTEIHFDRIGNRDA-ASLVNNDDPTCIEIWNLVFIQFNRESDGSLKSLPAKHVDT 249

Query: 227  GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVD 277
            GMG ER+ ++LQ K +NYD D+F  +  A +Q TG +               + +RV+ D
Sbjct: 250  GMGFERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDADKVDMAYRVVAD 309

Query: 278  HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTE---- 332
            H+R+ SF IADG  P NEGR YVLRRI+RRA+ Y    L   E      +  +       
Sbjct: 310  HIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNSFVNIVVKVMGDV 369

Query: 333  --------------------------MGSAYPELIQAKLLIEETLRSED-------ERFG 359
                                      +         A+ +  + L  ++         F 
Sbjct: 370  FPELKQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEVQGKILNGQEFYNIQVFTNFI 429

Query: 360  KTLDRGLVLLDGVLSHLGKDEILNG-----------------------------DVAFKL 390
                +       +   +G     +G                               AF L
Sbjct: 430  HDSQKCCNHFKEIFLWVGGAFWPSGSVEVVHFSDILMLFQDVEDGNKLVSLMIIKDAFVL 489

Query: 391  YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
            +DT+G PLD+ Q +   RGL  +D+  FN AL+E R R+R+       GT          
Sbjct: 490  WDTYGFPLDLTQLMAEERGLI-VDVQGFNAALDEARERSRSAQNKQAGGTIVM------- 541

Query: 451  KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
                      D    S   K                   S++KAI    E +E A +G +
Sbjct: 542  ----------DADATSALHKRGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLESASAGNE 591

Query: 511  VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI-FVHHAIVERGILRTEM 569
            V +V + T FYAE GGQ+ DTG   G     Q+ +VQ     I  +       G      
Sbjct: 592  VGIVLETTSFYAEQGGQIFDTGSLEGTSGSFQVCNVQIYGGFILHIGSFTEASGRFSVGD 651

Query: 570  SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             ++  +DY  R+ ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KP+  
Sbjct: 652  KVICKVDYDRRKVIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVHP 711

Query: 630  AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------ 682
              L+ IE  VN+ I   L V ++  +  DA + +G  A+ G  Y D VRVVS+       
Sbjct: 712  DHLRKIESIVNEQIDAELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVSIGQKVEDL 771

Query: 683  -----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
                  E     S+ LCGGTH+S+T E     ++SE  I  GIRRI A+T   A   +  
Sbjct: 772  LADPGNEKWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDVAFKAIEL 831

Query: 738  QDEKLKSLASFLK------------------------VSQGNVVGRVEEIWEEYRKLQLI 773
                 + +    K                          + ++  ++  + ++ RK Q  
Sbjct: 832  ARSLEQEVDDASKTEGISLEKKVASLRSRVDSAPIPAARKADLRAKISLLQDQVRKAQKK 891

Query: 774  HAKRKLQLNVED----LSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLV 828
             A+  +Q  V+               F    +   +D+  ++  +  + ++    +++  
Sbjct: 892  FAEENIQKAVKAATDMAQLAASDGKTFCISHVDVGLDTTAVREAVLKVIEQKGISVMIFS 951

Query: 829  GISKEKKASVLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                  KA V   V +  D   +    +    +   L G  G G+  +AQ  G + +   
Sbjct: 952  TDETTNKAVVYAGVPQKGDKAKQLEVSEWLTAALGPLKGRCGKGKGGLAQGQGTDASHVK 1011

Query: 887  QAIAGVASF 895
            +A+    +F
Sbjct: 1012 EAMDVAENF 1020


>gi|322829672|gb|EFZ32980.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 959

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 290/982 (29%), Positives = 457/982 (46%), Gaps = 122/982 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           V+ +R  FL+FF++ GH+ +PSS ++P NDPTL+F N+GM  FKN+F G   P       
Sbjct: 6   VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 Q C+RAGGKHNDLD+VGR   HHTFFEMLG++SFG YFK  AI+ AW+LLT+ +
Sbjct: 66  TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T ++         DEEA +LW ++  +  + +I     DNFW M + GPCG
Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           ++E    IEIWNLVFMQFE+        LPKM +DTGMGL
Sbjct: 184 PCSEVHFDRL-GGRNAAELVNKEDPMVIEIWNLVFMQFERHEGGVLVPLPKMHVDTGMGL 242

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---------NHRVIVDHLRS 281
           ER+ +++Q   +NYD D +  L +A + VTG +     I           +RVI DH+R 
Sbjct: 243 ERLTSIMQGVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADHIRC 302

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            S  +ADG +P + GRG+VLRRI+RRA+ Y    LG        L+ A+   +G  +  +
Sbjct: 303 LSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFFTHM 362

Query: 341 IQAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
              +    I+  L  E+  F KT D GL   +  ++    D  ++GD AF L+D +G P+
Sbjct: 363 QDPRTVQRIKTVLADEEASFSKTWDVGLKHFNKAVADAV-DNTISGDNAFILHDRYGFPV 421

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   +    GL  +D+  F+  ++  +  A       G     K +  + +        
Sbjct: 422 DLTCLLAEKAGLR-VDMNGFHATMKANQLSA-------GRVAAAKTFLDVHQL------- 466

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVE---- 512
                   + +K+      +     +    ++ VKAI   + G  V+  + G++ E    
Sbjct: 467 --------EELKQMGIAPTEDAAKYIWKNRTAEVKAIFNKKTGTFVDMLMPGEEGEEDIG 518

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG-----ILRT 567
           ++ D T FYAE+GGQ+ DTG  +     +          G  VH   +         +  
Sbjct: 519 LIMDVTNFYAESGGQIYDTGRIVAAADAVFEVKKVYNLGGYVVHLGRMMTTNSTAVPIPV 578

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-------LGSHVSQNGSCITPDGLRFD 620
             S+ L +DY+ R  ++ NHS TH+L+  L  +           V Q GS +T + LRFD
Sbjct: 579 TSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPESYMEVQQKGSLVTEEMLRFD 638

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV 679
            +++  ++  +L  IE  +N+ I Q L V  + +  E A    G   + G KY D V V+
Sbjct: 639 FSYNSRVSQEDLAKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPDPVSVI 698

Query: 680 SVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE---- 724
           SV              +   ++   CGGTH+S+  E  +  I+SE ++  G+RRI     
Sbjct: 699 SVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKEAEVAVILSEEALMKGVRRIVVATR 758

Query: 725 -------------------AITGQRARSHLMGQDEKLKSLASFL------KVSQGNVVGR 759
                               + G    S         K +   L         +  + G 
Sbjct: 759 DAARKARARGELLEKEYRDIVAGGMTDSTAKSLSVLNKKVGDSLIPLTVKNSLREEIDGS 818

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQ 817
           V       + +     ++       +   +   +  F    +S+   + + L++  D   
Sbjct: 819 VRAALANVKAMAAQLREKATVAGRAEAEAYDAVENPFFVKRLSDFGAEREALQAYADGFT 878

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             +Q  + + +  +   KA  L+ + +     + +AVD A+ +      G GGG+PH AQ
Sbjct: 879 NAVQGDVGVFLFGTDANKALALVTLPKAFTAKKLSAVDWAKAAI-----GKGGGKPHAAQ 933

Query: 877 SGGPNGN---KADQAIAGVASF 895
           SG    +     ++A+A  A  
Sbjct: 934 SGLTAADVDVAMEKALAEAAKM 955


>gi|157886445|emb|CAP09517.1| novel protein similar to vertebrate alanyl-tRNA synthetase like
           (AARSL) [Danio rerio]
          Length = 996

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 297/964 (30%), Positives = 441/964 (45%), Gaps = 83/964 (8%)

Query: 3   NVSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
               +R  F++FF++  GH ++PSSS+ P  DP+L+F N+GM  FK I  G   P     
Sbjct: 35  TSKRVRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMV 94

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKCVRAGGKHNDL +VG+   HHTFFEMLGN+SFG YFK  A  +AW LLT+
Sbjct: 95  SYRRVVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTE 154

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           E+ +  +RLY++ +          DEE   +W    GL AD ++     DNFW M ETGP
Sbjct: 155 EYGIPAQRLYVSYFSGDPANGLPADEETRDIWLS-MGLRADHVLPFGMKDNFWEMGETGP 213

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D        L   + +    +EIWNLVFMQ+ +++      LP+ S+DTGM
Sbjct: 214 CGPCTEIHYDHIGNRNAAL-LVNADSPDVVEIWNLVFMQYNRESNGSLRALPQCSVDTGM 272

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ TVLQ K +NYD DLF  L+ A  Q +                  + +RV+ DH+
Sbjct: 273 GLERLVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHI 332

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338
           R+    IADG+ P   G   VLRRI+RRA+ ++   L   E  +  L+P +   +G AYP
Sbjct: 333 RTICVCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVAHLLGDAYP 392

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLP 397
           EL      I + +   +  F  +L +G  ++D  LS++ ++       VA+ LY   G P
Sbjct: 393 ELNTESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFP 452

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           LD++  +L  +G   +D        +E            G    +    SL E       
Sbjct: 453 LDLIDLMLEEKGKI-VDKKEMKVLEDEYEKLGLQSEEDEGEKLDQLDLHSLAELQR---- 507

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                                     +     + V A+   G +V E   GQ   V+ DQ
Sbjct: 508 ----QRVPHTDDSPKYCYSVGSDGQYVFEPCKASVLALYCDGALVSEVRQGQHCAVILDQ 563

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G    DG   +       +  G +V H +     LRT   + L +D
Sbjct: 564 TSFYAEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLHVD 623

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    INH+ATH+L+ AL  +LG  VSQ GS  + + LRFD +    +T +EL+ +E
Sbjct: 624 EAWRLGCMINHTATHVLNFALRELLGPIVSQRGSHCSANRLRFDFSVKGTLTVSELQKVE 683

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--------VEYEDGGV 688
           + V +II QN  V    +    A        +   Y D VRVVS        +  E    
Sbjct: 684 ELVLNIIRQNADVHVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLLASERAEQ 743

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------HLMGQDEKL 742
            S  LC GTH+  TG I    +VSE  +  G+ RI A TG  A         L  + E L
Sbjct: 744 TSVELCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQALQEELESL 803

Query: 743 KS---LASFLKVSQGN-VVGRVEEIWE--------EYRKLQLI-----------HAKRKL 779
           ++   L++ L + +   +   V  +          ++++L+L            ++ RKL
Sbjct: 804 EARMGLSNTLSIQEAKRLSKEVGHLINAVDITPMPQWKRLELQTRLKAMLKSSNNSIRKL 863

Query: 780 QLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG-ISKEK 834
           ++    L   ++    ++   +  +I       L   +  L K     ++ML        
Sbjct: 864 EIKEAALKAKELLDKHSNKPVVVDLIQTDSISVLMKTVVQLSKSTPKSLVMLFSHWESSG 923

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K     +V +      +A++ A      L GG   G    A+  G N  K +  +A +  
Sbjct: 924 KLLCACLVPKGSTGG-SAIEWALSVCSRL-GGNAEGAKDTAKGVG-NAVKVED-VAEILH 979

Query: 895 FLKK 898
           + ++
Sbjct: 980 WAEE 983


>gi|326678670|ref|XP_001332388.4| PREDICTED: alanyl-tRNA synthetase, mitochondrial [Danio rerio]
          Length = 1001

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 297/964 (30%), Positives = 441/964 (45%), Gaps = 83/964 (8%)

Query: 3   NVSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
               +R  F++FF++  GH ++PSSS+ P  DP+L+F N+GM  FK I  G   P     
Sbjct: 40  TSKRVRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMV 99

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKCVRAGGKHNDL +VG+   HHTFFEMLGN+SFG YFK  A  +AW LLT+
Sbjct: 100 SYRRVVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTE 159

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           E+ +  +RLY++ +          DEE   +W    GL AD ++     DNFW M ETGP
Sbjct: 160 EYGIPAQRLYVSYFSGDPANGLPADEETRDIWLS-MGLRADHVLPFGMKDNFWEMGETGP 218

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D        L   + +    +EIWNLVFMQ+ +++      LP+ S+DTGM
Sbjct: 219 CGPCTEIHYDHIGNRNAAL-LVNADSPDVVEIWNLVFMQYNRESNGSLRALPQCSVDTGM 277

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ TVLQ K +NYD DLF  L+ A  Q +                  + +RV+ DH+
Sbjct: 278 GLERLVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHI 337

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338
           R+    IADG+ P   G   VLRRI+RRA+ ++   L   E  +  L+P +   +G AYP
Sbjct: 338 RTICVCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVAHLLGDAYP 397

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLP 397
           EL      I + +   +  F  +L +G  ++D  LS++ ++       VA+ LY   G P
Sbjct: 398 ELNTESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFP 457

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           LD++  +L  +G   +D        +E            G    +    SL E       
Sbjct: 458 LDLIDLMLEEKGKI-VDKKEMKVLEDEYEKLGLQSEEDEGEKLDQLDLHSLAELQR---- 512

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                                     +     + V A+   G +V E   GQ   V+ DQ
Sbjct: 513 ----QRVPHTDDSPKYCYSVGSDGQYVFEPCKASVLALYCDGALVSEVRQGQHCAVILDQ 568

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G    DG   +       +  G +V H +     LRT   + L +D
Sbjct: 569 TSFYAEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLHVD 628

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    INH+ATH+L+ AL  +LG  VSQ GS  + + LRFD +    +T +EL+ +E
Sbjct: 629 EAWRLGCMINHTATHVLNFALRELLGPIVSQRGSHCSANRLRFDFSVKGTLTVSELQKVE 688

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--------VEYEDGGV 688
           + V +II QN  V    +    A        +   Y D VRVVS        +  E    
Sbjct: 689 ELVLNIIRQNADVHVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLLASERAEQ 748

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------HLMGQDEKL 742
            S  LC GTH+  TG I    +VSE  +  G+ RI A TG  A         L  + E L
Sbjct: 749 TSVELCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQALQEELESL 808

Query: 743 KS---LASFLKVSQGN-VVGRVEEIWE--------EYRKLQLI-----------HAKRKL 779
           ++   L++ L + +   +   V  +          ++++L+L            ++ RKL
Sbjct: 809 EARMGLSNTLSIQEAKRLSKEVGHLINAVDITPMPQWKRLELQTRLKAMLKSSNNSIRKL 868

Query: 780 QLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG-ISKEK 834
           ++    L   ++    ++   +  +I       L   +  L K     ++ML        
Sbjct: 869 EIKEAALKAKELLDKHSNKPVVVDLIQTDSISVLMKTVVQLSKSTPKSLVMLFSHWESSG 928

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K     +V +      +A++ A      L GG   G    A+  G N  K +  +A +  
Sbjct: 929 KLLCACLVPKGSTGG-SAIEWALSVCSRL-GGNAEGAKDTAKGVG-NAVKVED-VAEILH 984

Query: 895 FLKK 898
           + ++
Sbjct: 985 WAEE 988


>gi|71416315|ref|XP_810193.1| alanyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70874690|gb|EAN88342.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 959

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 288/982 (29%), Positives = 454/982 (46%), Gaps = 122/982 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           V+ +R  FL+FF++ GH+ +PSS ++P NDPTL+F N+GM  FKN+F G   P       
Sbjct: 6   VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 Q C+RAGGKHNDLD+VGR   HHTFFEMLG++SFG YFK  AI+ AW+LLT+ +
Sbjct: 66  TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T ++         DEEA +LW ++  +  + +I     DNFW M + GPCG
Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           ++E    IEIWNLVFMQFE+        LPKM +DTGMGL
Sbjct: 184 PCSEVHFDRL-GGRNAAELVNKEDPMVIEIWNLVFMQFERHEGGVLVPLPKMHVDTGMGL 242

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---------NHRVIVDHLRS 281
           ER+ +++Q   +NYD D +  L +A + VTG +     I           +RVI DH+R 
Sbjct: 243 ERLTSIMQGVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADHIRC 302

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            S  +ADG +P + GRG+VLRRI+RRA+ Y    LG        L+ A+   +G  +  +
Sbjct: 303 LSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFFTHM 362

Query: 341 IQAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
              +    I+  L  E+  F KT D GL   +  ++    D  ++GD AF L+D +G P+
Sbjct: 363 QDPRTVQRIKTVLADEEASFAKTWDVGLKHFNKAVADAV-DNTISGDNAFILHDRYGFPV 421

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   +    GL           +    +  +A+ L  G     K +  + +        
Sbjct: 422 DLTCLLAENAGLRVD--------MNGFHAAMKANQLSAGRVAAAKTFLDVHQL------- 466

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVE---- 512
                   + +K+      +     +    ++ VKAI   + G  V+  + G++ E    
Sbjct: 467 --------EELKQMGIAPTEDAAKYIWKNRTAEVKAIFNKKTGTFVDMLMPGEEGEEDIG 518

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG-----ILRT 567
           ++ D T FYAE+GGQ+ DTG  +     +          G  VH   +         +  
Sbjct: 519 LIMDVTNFYAESGGQIYDTGRIVAAADAVFEVRKVYNLGGYVVHLGRMMTTNSTAVPIPV 578

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-------LGSHVSQNGSCITPDGLRFD 620
             S+ L +DY+ R  ++ NHS TH+L+  L  +           V Q GS +T + LRFD
Sbjct: 579 TSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPENYMEVQQKGSLVTEEMLRFD 638

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV 679
            +++  ++  +L  IE  +N+ I Q L V  + +  E A    G   + G KY D V V+
Sbjct: 639 FSYNSKVSQEDLVKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPDPVSVI 698

Query: 680 SVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE---- 724
           SV              +   ++   CGGTH+S+  E  +  I+SE ++  G+RRI     
Sbjct: 699 SVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKESEVAVILSEEALMKGVRRIVVATR 758

Query: 725 -------------------AITGQRARSHLMGQDEKLKSLASFL------KVSQGNVVGR 759
                               + G    S         K +   L         +  + G 
Sbjct: 759 DAARKARARGELLEKEYRDIVAGGMTDSTAKSLSVLNKKVGDSLIPLTVKNSLREEIDGS 818

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQ 817
           +       + +     ++       +   +   +  F    +S+   + + L++  D   
Sbjct: 819 IRAALANVKAMAAQLREKATVAGRAEAEAYDAVENPFFVKRLSDFGAEREALQAYADGFT 878

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             +Q  + + +  +   KA  L+ + +     + +AVD A+ +      G GGG+PH AQ
Sbjct: 879 NAVQGDVGVFLFGTDANKALALVTLPKAFTAKKLSAVDWAKAAI-----GKGGGKPHAAQ 933

Query: 877 SGGPNGN---KADQAIAGVASF 895
           SG    +     ++A+A  A  
Sbjct: 934 SGLTAADVDVAMEKALAEAAKM 955


>gi|42560730|ref|NP_975181.1| alanyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|48428509|sp|P61704|SYA_MYCMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|42492226|emb|CAE76823.1| alanine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301321137|gb|ADK69780.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 896

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 286/934 (30%), Positives = 469/934 (50%), Gaps = 100/934 (10%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+FF    H  L + SLIP +DP+L++ NSG+   K  F G++ P  
Sbjct: 1   MKKLSTNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT  K
Sbjct: 61  PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF
Sbjct: 117 YFDIDKNKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIF 175

Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE      I   L     E +RYIE+WN+VF QF          LP+ +IDTG GLE
Sbjct: 176 YDRGEIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVN-----------HRVIVDH 278
           R A++ Q    N++ D+F   I+  EQ+     KY  +N  N            +VI DH
Sbjct: 236 RFASIFQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADH 295

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +R++ F I+DG+ P N+ RGY++RR++RR+  + + LG  +  +  L+ ++   M   YP
Sbjct: 296 IRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYP 355

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            LI  K L+E+T++ E+E+F KTL +G  LL+ ++        ++   A  L++++G P+
Sbjct: 356 YLIDKKTLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNTVSDKDALLLFESYGFPI 412

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           +   +I        +D+  F + LE+ +   R     L +   +   F+  +    ++F 
Sbjct: 413 EQTIEIS-ELSNVTVDVEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKV--ESEFT 469

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G+                            ++ V  +    + VE     Q+V V+ D+T
Sbjct: 470 GWSETSRD----------------------NAKVIYMFTDQKQVESIT-NQEVFVILDKT 506

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    D ++  + DVQ+      + H I  +G L+    +   +D +
Sbjct: 507 PFYAEKGGQAADSGIIFNDQMKGFVIDVQQGPTHQNI-HRIKVQGTLKVNDLINCRVDEE 565

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHS TH++H+AL  +LG+ V Q+GS    +GLR D T+ +  T+ EL   ++ 
Sbjct: 566 KRIYTMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNL 625

Query: 639 VNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           V + I   +   T   + E+++    A A    KY+  VRV+       G  SS LCGGT
Sbjct: 626 VLEKIKNKIDRQTYFCSLEESVKKHQALAFFTEKYDQIVRVIKF-----GDFSSELCGGT 680

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLAS--------- 747
           HV++T EI    I    S  +G+ RI+ +T  RA   +L  Q +  K  A          
Sbjct: 681 HVNNTSEIEDFIITGIESKGSGLYRIKCLTSFRAVNEYLNEQFKVYKDQAESIIDKYNQN 740

Query: 748 --FLKVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-- 789
              LK  Q            + +     ++ + ++ +++   + K+   L   +      
Sbjct: 741 KDLLKNDQLENIYLQIKNTTINKDNLLVIKNLLDQSKEVNKDYDKKVNDLITANKLLKYK 800

Query: 790 ------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                    ++N +    ++++ K+LK + D L+ K    I++L+  + E    +++ V+
Sbjct: 801 DLTPSLNKDNINEIRLETTDLNIKDLKQLADDLRNKYNDLIVILLSSTNEN-TFIVVAVS 859

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           + L +++ A+D+            GGG  ++AQ 
Sbjct: 860 QSLQNKYKAIDIFNNLEGYET--KGGGNANLAQG 891


>gi|225620397|ref|YP_002721654.1| alanyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|225215216|gb|ACN83950.1| alanyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 867

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 296/885 (33%), Positives = 477/885 (53%), Gaps = 49/885 (5%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
           H +  SSSLIP +DP+L+FT +GM+ FK  + G +K  Y  V T+QKC R      DL+N
Sbjct: 19  HAIEKSSSLIPIDDPSLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRLS----DLEN 74

Query: 80  VGRTNRHHTFFEMLGNFSF-GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138
           +G+T RHHTFFEM GNF F G YFK+ AI+ AW+  T+   L   R+Y+++Y++D++AFK
Sbjct: 75  IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPIERIYVSIYEKDDDAFK 134

Query: 139 LWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195
           +W +  G+  +KI+R+   DNFW    ++G CGPCSE++ D GE    G P      + E
Sbjct: 135 IWNEHIGVPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           RY+E WNLVF +F Q  +     LP + IDTGMGLER+  + Q   +NY  D+ K ++ A
Sbjct: 195 RYLEFWNLVFNEFFQDTEGNLSPLPNVGIDTGMGLERLCYITQGVESNYQTDVMKPIVDA 254

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
             +   +KY+  N     +I DHLR+  F+I++G  P+NEGRGYVLRR++RRA+  A  L
Sbjct: 255 IAKKLNVKYDDKNKTKINLIADHLRALVFVISEGCTPSNEGRGYVLRRLLRRALKTASDL 314

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G+    +  +  ++       Y  L + +  ++  L+ E+ +F  T+  G+  L  V+  
Sbjct: 315 GHKGSFLNEITSSVVNVYKEIYDYLPKEEENVKRILKDEENKFINTISAGMNKLYAVMEE 374

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
               ++++G  AF L+DT+GLP+DI ++     G   +D   F +A+EEQ+ R+R     
Sbjct: 375 NKDSKVISGKDAFMLFDTYGLPIDITEEEASDHGFT-VDKAGFEEAMEEQKKRSRGAG-- 431

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
                          +   ++F GY        ++        +   +L NGV++ + A+
Sbjct: 432 ---------------EDKRSKF-GY--------VENYETKYVGEETDNLINGVNAKIIAV 467

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
            +     ++  S     ++ D +PFY E GGQ+GD G        +      +K E   +
Sbjct: 468 YEDNAKKDKTSS-SNAVIITDVSPFYGEMGGQIGDNGYIENSKKEIIKIIDTQKKENTII 526

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H A      L     + L +++  R  +  NH+ATH+L   L   LG+HV+Q GS ++ +
Sbjct: 527 HIADCSSHSLSVGEEIKLFVNFDRRSAIRKNHTATHILQKVLELTLGNHVNQAGSFVSDE 586

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
            LRFD TH   I+   L SIE+ VN+++ +++P V + M +E+AIA GA AL G KY D 
Sbjct: 587 YLRFDFTHPDSISEDTLISIENQVNEVVFKSMPAVIKYMPKEEAIACGAKALFGEKYPDT 646

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR++ +    G   S  LCGG+H+++T E+   +IVSE S+ +G+RRIEAITG +A +  
Sbjct: 647 VRILDI----GNGFSVELCGGSHLTNTSEVGYFHIVSEGSVASGVRRIEAITGLKAANEA 702

Query: 736 MGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSCHKI 791
                K+K+LA  L  S+   +  R E +  E +KLQ    + K           +   +
Sbjct: 703 SKLFSKVKNLAHILNASKTDELTVRAESLQNEVKKLQKEIKQLKTSGASAVSFMDNFEDL 762

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DR 849
             + F +   ++ D KE++   D ++++++  I +++    +   S+L+ +T + L   +
Sbjct: 763 KGIKFYNLEFND-DIKEVRLYADTIKERVKDSIAVMIS-KTDSSNSILVQITGNALKEKK 820

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +A ++ +      GG G GG+   AQ    N  KA + I  + S
Sbjct: 821 LSANNIIKDIIAAAGGRG-GGKDTFAQGSIENIEKAKEEINKLKS 864


>gi|71655886|ref|XP_816499.1| alanyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70881631|gb|EAN94648.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 959

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 290/982 (29%), Positives = 456/982 (46%), Gaps = 122/982 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           V+ +R  FL+FF++ GH+ +PSS ++P NDPTL+F N+GM  FKN+F G   P       
Sbjct: 6   VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 Q C+RAGGKHNDLD+VGR   HHTFFEMLG++SFG YFK  AI+ AW+LLT+ +
Sbjct: 66  TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T ++         DEEA +LW ++  +  + +I     DNFW M + GPCG
Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           ++E    IEIWNLVFMQFE+        LPKM +DTGMGL
Sbjct: 184 PCSEVHFDRL-GGRNAAELVNKEDPMVIEIWNLVFMQFERHEDGVLVPLPKMHVDTGMGL 242

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---------NHRVIVDHLRS 281
           ER+ +++Q+  +NYD D +  L +A + VTG +     I           +RVI DH+R 
Sbjct: 243 ERLTSIMQDVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADHIRC 302

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            S  +ADG +P + GRG+VLRRI+RRA+ Y    LG        L+ A+   +G  +  +
Sbjct: 303 LSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFFTHM 362

Query: 341 IQAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
              +    I+  L  E+  F KT D GL  L+  ++    D  ++GD AF L+D +G P+
Sbjct: 363 QDPRTVQRIKTVLADEEASFAKTWDVGLKHLNKAVADAV-DNTISGDNAFILHDRYGFPV 421

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   +    GL           +    +  +A+ L  G     K +  + +        
Sbjct: 422 DLTCLLAEKAGLRVD--------MNGFHAAMKANQLSAGRVAAAKTFLDVHQL------- 466

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVE---- 512
                   + +K+      +     +    ++ VKAI   + G  V+  + G++ E    
Sbjct: 467 --------EELKQMGIAPTEDAAKYIWKNRTAEVKAIFNKKTGTFVDMLMPGEEGEEDIG 518

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG-----ILRT 567
           ++ D T FYAE+GGQ+ DTG  +     +          G  VH   +         +  
Sbjct: 519 LIMDVTNFYAESGGQIYDTGRIVAAADAVFEVKKVYNLGGYVVHLGRMMTTNSTAVPIPV 578

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-------LGSHVSQNGSCITPDGLRFD 620
             S+ L +DY+ R  ++ NHS TH+L+  L  +           V Q GS +T + LRFD
Sbjct: 579 TSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPENYMEVQQKGSLVTEEMLRFD 638

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV 679
            +++  ++  +L  IE  +N+ I Q L V  + +  E A    G   + G KY D V V+
Sbjct: 639 FSYNSKVSQEDLVKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPDPVSVI 698

Query: 680 SVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE---- 724
           SV              +   ++   CGGTH+S+  E  +  I+SE ++  G+RRI     
Sbjct: 699 SVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKEAEVAVILSEEALMKGVRRIVVATR 758

Query: 725 -------------------AITGQRARSHLMGQDEKLKSLASFL------KVSQGNVVGR 759
                               + G    S         K +   L         +  + G 
Sbjct: 759 DAAREARARGELLEKEYRDIVAGGMTDSTAKSLSVLNKKVGDSLIPLTVKNSLREEIDGS 818

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQ 817
           V       + +     ++       +   +   +  F    +S+   + + L++  D   
Sbjct: 819 VRAAIANVKAMAAQLREKATVAGRAEAEAYDAVENPFFVKRLSDFGAEREALQAYADGFT 878

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             +Q  + + +  +   KA  L+ + +     + +AVD A+ +      G GGG+PH AQ
Sbjct: 879 NAVQGDVGVFLFGTDANKALALVTLPKAFTAKKLSAVDWAKAAI-----GKGGGKPHAAQ 933

Query: 877 SGGPNGN---KADQAIAGVASF 895
           SG    +     ++A+A  A  
Sbjct: 934 SGLTAADVDVAMEKALAEAAKM 955


>gi|313665096|ref|YP_004046967.1| alanine--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949489|gb|ADR24085.1| alanine--tRNA ligase [Mycoplasma leachii PG50]
          Length = 896

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 290/934 (31%), Positives = 470/934 (50%), Gaps = 100/934 (10%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+FF    H  L   SLIP +DP+L++ NSG+   K  F G++ P  
Sbjct: 1   MKKLSTNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AIQLAW+LLT + 
Sbjct: 61  PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIQLAWELLTDKN 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF
Sbjct: 117 YFDIDKNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIF 175

Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE      I   L   + E +RYIE+WN+VF QF          LP+ +IDTG GLE
Sbjct: 176 YDRGEVWDPNKIGSRLISDNIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVN-----------HRVIVDH 278
           R A++ Q    N++ D+F   I+  EQ+     KY  +N  N            +VI DH
Sbjct: 236 RFASIFQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADH 295

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +R++ F I+DG+ P N+ RGY++RR++RR+  + + LG  +  +  L+ ++   M   YP
Sbjct: 296 IRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYP 355

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            LI  K L+E+T++ E+E+F KTL +G  LL+ ++       I++G  A  L++++G P+
Sbjct: 356 YLIDRKTLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNIVSGKDALLLFESYGFPI 412

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           +   +I        +D+  FN  LE+ +   R     L +   +   F+  +    ++F 
Sbjct: 413 EQTIEIS-ELSNVQVDVEGFNNLLEQAKQATRNARKDLKAWDKQNELFTKLKV--ESEFT 469

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G+  L                            V  +    + VE     Q+  V+ D+T
Sbjct: 470 GWSELSRDNV----------------------KVIYMFTDQKQVESITD-QEAFVILDKT 506

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    D ++  + DVQ+      + H I  +G L+    +   ++ +
Sbjct: 507 PFYAEKGGQAADSGIIFNDQMKGFVIDVQQGPTHQNI-HRIKVQGTLKVNDLINCRVEEE 565

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHS TH++H+AL  +LG++V Q+GS    +GLR D T+ +  TS EL   ++ 
Sbjct: 566 KRIYTMKNHSGTHMIHYALREVLGTNVMQSGSYNDENGLRMDFTYHRLPTSEELLKAQNL 625

Query: 639 VNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           V + I   +   T   + E+++    A A    KY+  VRV+       G  SS LCGGT
Sbjct: 626 VLEKIKNKIDRQTYFCSLEESVKKHQALAFFTEKYDQIVRVIKF-----GDFSSELCGGT 680

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLAS--------- 747
           HV++T EI    I    S  +G+ RI+ +T  RA   +L  Q +  K  A          
Sbjct: 681 HVNNTSEIEDFIITGIESKGSGLYRIKCLTSFRAVNEYLNEQFKAYKDQAESIIDKYNQN 740

Query: 748 --FLKVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-- 789
              LK  Q            + +     ++++ ++ +++   + K+   L   +      
Sbjct: 741 KDLLKNDQLENIYLQIKNITINKDNLLVIKDLLDQLKEVNKDYDKKVNDLITANKLLKYK 800

Query: 790 ------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                    ++N +    +++  K+LK + D L+ K    I++L+  +KE    +++ V 
Sbjct: 801 DLTPSLNKDNINEIRLETTDLTIKDLKQLADDLRNKYNDLIVILLSSTKENN-FIVVAVG 859

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           + L +++ A+D+            GGG  ++AQ 
Sbjct: 860 QSLQNKYKAIDIFNNLEGYET--KGGGNANLAQG 891


>gi|321260042|ref|XP_003194741.1| alanine-tRNA ligase [Cryptococcus gattii WM276]
 gi|317461213|gb|ADV22954.1| Alanine-tRNA ligase, putative [Cryptococcus gattii WM276]
          Length = 1012

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 297/969 (30%), Positives = 441/969 (45%), Gaps = 97/969 (10%)

Query: 4    VSSIRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
             + +R TF+++F       H   PSS +IP +D TL+F N+GM  +K +F G   P    
Sbjct: 62   AAKVRQTFIDYFVNQPGFEHTFWPSSGVIPFDDDTLLFANAGMNQYKPLFLGTADPKSEL 121

Query: 59   ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  A+ +AWDLLT
Sbjct: 122  SKLIRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKLGALTMAWDLLT 181

Query: 116  KEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
            + + L + RLY+T ++         D EA ++W+ + G+    I+     DNFW M  TG
Sbjct: 182  RVYGLPKDRLYVTYFEGDAKQGLEPDSEAQQIWRDL-GVPESHILPGNAKDNFWEMGATG 240

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPCSEI FD+           + +    +EIWN VF+Q+ ++   E   LP   +DTG
Sbjct: 241  PCGPCSEIHFDRI-GGREAAHLVNADDPNVLEIWNNVFIQYNREPSGELRTLPAKHVDTG 299

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
            MG ER+ +VL   ++NYD D+F  +    +++TG +                 +RVI DH
Sbjct: 300  MGFERLVSVLHNVSSNYDTDVFTPIFSKIQELTGARPYEGKLGDEDKDGIDTAYRVIADH 359

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YTEPLMMHLLPALCTEMGSA 336
            +R+ +  I+DG +P  +GRGYVLRR++RR + YA              L+P +   +G  
Sbjct: 360  IRTLTIAISDGGIPDKDGRGYVLRRVLRRGVRYASNKFGVKIGTFFSSLVPTVVESLGPI 419

Query: 337  YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTH 394
            +PE+ +    + E L  E+  F +TL RG  L +     +   K  +L+G   ++LYDT+
Sbjct: 420  FPEVTKKIPELIEILNEEEASFARTLTRGEALFNKYATTAIAEKRTVLSGKDIWRLYDTY 479

Query: 395  GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
            G P+D+ Q +   RGL  ID  +F +A  E    ++A          +     L      
Sbjct: 480  GFPVDLTQIMAEERGLK-IDQEAFEKARLESLEASKAGGKEKAGAQVKLDVHDLA----- 533

Query: 455  TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKV 511
                             D             + + + VK+I    + +            
Sbjct: 534  ------------ALEANDAVPKTDDSFKYNLDDIKASVKSIYHNSKFLNSTSELPPNTTF 581

Query: 512  EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
             ++ D+T FYAE+GGQ  DTG    D       +  +   G  +H   +E G +     +
Sbjct: 582  GILLDRTNFYAESGGQEYDTGVIAIDDKAEFKVEDVQVYNGYVLHIGRMEEGEIEVGDEV 641

Query: 572  VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + T D   R  +  NH+ TH+L+ AL  +LG H+ Q GS + P  LRFD +H K I   E
Sbjct: 642  ICTYDELRRWPIRNNHTGTHILNFALREVLGDHIDQKGSLVAPTKLRFDFSHGKSIAVPE 701

Query: 632  LKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV----------- 679
            L  IE   ND I + +PV  + M   +A    G  A+ G  Y D VRVV           
Sbjct: 702  LIKIEAICNDWIKKGVPVYAKDMPLAEAYKIPGLRAVFGEAYPDPVRVVCLGYPLEEISK 761

Query: 680  SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-------- 731
            +VE       S   CGGTHV+ T +I    I+ ESSI  GIRRI A+TG  A        
Sbjct: 762  NVEDARWRQTSIEFCGGTHVAKTDDIKDFVIIEESSIAKGIRRIVAVTGHDAHDVSRKGA 821

Query: 732  -----RSHLMGQDEKLKSLA-----SFLKVSQGNVVGRVEEIWEEYRKLQLIHAK----- 776
                    +     K K LA     + L  S  +++ +   + E++ K+Q          
Sbjct: 822  EFERKLQRIRELQGKEKELAMKPFLTELGQSGISLIKK-NSLKEQFEKVQGELVAAAKAK 880

Query: 777  ----RKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGIS 831
                 K+      +   +  + N  +       +SK L +   A  K     +       
Sbjct: 881  VAADSKIISEAIKIYFQENPNENVFAGSFDVGGNSKTL-TAAVAAGKAASKAVYAFSADP 939

Query: 832  KEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +  K + +  + + +      +A       AKV+ GG GGGR   A   G   NK D+AI
Sbjct: 940  ETGKVAHVNYLPKPILESKALDAKIWLNEVAKVI-GGKGGGRDDSAAGVGSEINKIDEAI 998

Query: 890  AGVASFLKK 898
                S  KK
Sbjct: 999  VVAKSVYKK 1007


>gi|229820505|ref|YP_002882031.1| alanyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
 gi|229566418|gb|ACQ80269.1| alanyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
          Length = 896

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 313/922 (33%), Positives = 489/922 (53%), Gaps = 61/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F +  H ++PS+SLI   DP+++FT +GMVPF     G E+  Y   
Sbjct: 1   MRTAEIRRRYLDYFAERDHTVVPSASLISA-DPSILFTIAGMVPFIPYIVGTEQAPYSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND++ VGRT RH TFF+M GNFSFG YFKE A++ AW+L+T      
Sbjct: 60  VSVQKCIRT----NDIEEVGRTTRHGTFFQMNGNFSFGDYFKEGAVEFAWELMTSSQDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD   L++TV++ED E  ++ +++    A++++ ++  D+FW   + GP GP +E  
Sbjct: 116 GFGLDPDLLWVTVWEEDAETARVLREVIDFPAERVVPLSRADSFWDTGQPGPAGPTAEWH 175

Query: 177 FDQG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230
            D+G +  P G P     G+RY+E WNLVF +F +     +       LP  SIDTGMGL
Sbjct: 176 LDRGADRGPDGGPAVDTAGDRYVEFWNLVFDEFLRGPGPGKDYPLLGELPMKSIDTGMGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ID    +I  +E+++G +Y     + V  RV+ DH+RS+  L++D
Sbjct: 236 ERVAAILQGKDNIYEIDEVFGVIARAEELSGRRYGASREDDVRMRVVADHVRSAMMLVSD 295

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRR++RR++   RLLG T+P +  LLP     M ++YPEL      I 
Sbjct: 296 GVKPSNEGRGYVLRRLLRRSVRAMRLLGVTDPALPELLPVSKDVMKASYPELEADFGRIS 355

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
             +  E++ F +TL  G  +LD  +  L +     L G+ AF L+DT+G P+D+  ++  
Sbjct: 356 TIVYDEEDAFRRTLTSGTTILDTAVRRLKESGGSQLGGEQAFALHDTYGFPIDLTLEMAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYG-ATQFIGYDLLR 464
            +G   +D  +F + + EQR+RARA +L   SG  +  ++  +         F+GY    
Sbjct: 416 EQG-VSVDEEAFRRLMGEQRARARADALAKRSGHADTSVYRDIAGSLPAPVSFLGYTDAE 474

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                      V  ++  G     A +  +VEVV D+TPFYAEA
Sbjct: 475 ARVA-----------------------VVGLLVDGVPAPAAQAPAEVEVVLDRTPFYAEA 511

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G   + DG  +++ DVQ   +G+ VH   +  G+L    S V +ID   RR +
Sbjct: 512 GGQLADQGQIVLDDGAVVEVDDVQAPIKGLSVHRGRLVEGVLGLGSSGVASIDTARRRAI 571

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ATH++H A+   +G   +Q GS   P   RFD      + SA L  I   VN ++
Sbjct: 572 ARAHTATHMVHKAIREHVGESATQAGSENAPSRFRFDFRSGSALPSAALAEINARVNTLL 631

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           A +L V   +M  +DA A+GA AL G KY DRVRVVS+    GG  S  LC GTHV+STG
Sbjct: 632 ADDLDVTDEVMALDDARAAGAMALFGEKYGDRVRVVSI----GGDWSKELCAGTHVASTG 687

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            + L+ ++ ESSI +G+RR++A+ G  A  +   +   +  L   +      +  RV  +
Sbjct: 688 HLGLVTLLGESSIGSGVRRVDALVGDGAFGYQAKEHALVGQLTQLVGARGEELPERVSSL 747

Query: 764 WEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQ 817
               ++ +      +             S   ++    ++H   EV    ++++++  L+
Sbjct: 748 MTRLKEAEREIQSLRQGRLLAAAASLAASAALVSGARVVTHDAGEVASVDDVRALVVDLR 807

Query: 818 KKI--QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM 874
            ++      +++VG   + +A V+        +    A +L R  A    GGGGGGR  +
Sbjct: 808 DRLGEAQAAVVVVGGVAKGRAVVVAATNPAARESGVRAGELVR-VAAGALGGGGGGRDDL 866

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ GG + ++   A+  V + +
Sbjct: 867 AQGGGSDPDQIPAALEQVVAAV 888


>gi|323173022|gb|EFZ58653.1| alanyl-tRNA synthetase [Escherichia coli LT-68]
          Length = 714

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 313/741 (42%), Positives = 444/741 (59%), Gaps = 54/741 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                 +  + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATD--LSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + 
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR           
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + ++     A++F GYD L                        ++  V A+   G+ 
Sbjct: 351 GADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK       H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYG-QAIGHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQ 817
           +   +S V+ K L++++D L+
Sbjct: 682 LVSELSGVEPKMLRTMVDDLK 702


>gi|322504973|emb|CAM45216.2| putative alanyl-tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 962

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 268/962 (27%), Positives = 447/962 (46%), Gaps = 118/962 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           VS +R  F+++F+K GH  +P S + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQKFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKTLFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V   Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRVANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++         D EA +LW +   L   +II     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDVKNGLDPDLEAKELWGQF--LPESQIIPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           +++    +EIWNLVFMQFE++       LP+  +DTGMGL
Sbjct: 186 PCSEVHFDRI-GGRNAAGLVNKDDPMVVEIWNLVFMQFERRTDGLLTPLPQKHVDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLRS 281
           ER+ ++LQ   +NYD D++  + +A +  TG +     I +         +RV+ DH+R 
Sbjct: 245 ERLTSILQGVKSNYDTDVWIPIFEAIQTATGYRKSYVEIRSEPDSDALVAYRVVADHIRC 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  + DG++P + GRG+VLRRI+RRA+ Y    LG        L+ ++C  +G  +P L
Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGADPGFFTQLVDSVCASLGPFFPHL 364

Query: 341 I--QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396
              +    I+  L  E++ F KT + GL   +            +++G  AF L+D +G 
Sbjct: 365 KDPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAAGECRANNSRVISGSEAFVLHDRYGF 424

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +    G+  +D+  FN  +     +A   S G  +     I     E      
Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNAEM-----KANQVSAGRVAAAKTFIDAYQLEDL---- 474

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509
                        K+                 +  V AI   +    +     G     +
Sbjct: 475 -------------KKRAIPQTDDGAKYAWEDSTGEVLAIFDKKNSRFISLLEPGNDLGAE 521

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG---ILR 566
           +V ++ + T FYAE+GGQ+ DTG  +     +          G  VH   + +     + 
Sbjct: 522 EVGIILNATNFYAESGGQVYDTGRLVAARDCVFEVKKVYNVGGYVVHVGKLSKDSASPIP 581

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------LGSHVSQNGSCITPDGLRFD 620
               + + +DY+ R  ++ NH+ TH L+  L  +        + V Q GS +T + LRFD
Sbjct: 582 LSALVQMQVDYERRLPIAANHTTTHQLNWTLRRVLEENPANFTEVQQKGSLVTDEMLRFD 641

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            +H   +++ +L  +E  +N+ I   LP     +     +  +G   + G KY D V V+
Sbjct: 642 FSHHTKLSNEDLVRVEKLLNEKIQAGLPVYREEVPLAAASKINGLRQMFGEKYPDPVSVI 701

Query: 680 SVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           S+              +   ++   CGGTH+S+  E     I+SE ++  G+RR+   T 
Sbjct: 702 SIGAPINEMLANPEKEEWRDYAVEFCGGTHLSNLKEAEKAVIISEEALMKGVRRVVVATK 761

Query: 729 QRA-------------RSHLMGQDEKLKSLASF---------------LKVS-QGNVVGR 759
             A                L+ ++  + ++ +                LK + + N+   
Sbjct: 762 AEADKAIKAGAELKGQYDELVKREATVGNIKALSVLNKKVGDSCVPLVLKNAMRDNIDAA 821

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQ 817
           ++++    +       ++  +      + +  A   F  H ++    + + L++  D   
Sbjct: 822 IKQMNASLKLQVAEAKEKAAEAGKALGASYDAAAAPFFVHQMTEFGAEREALQAFSDGFS 881

Query: 818 KKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             +   + + L+G   EK  +++ + T  +  + +AV  A+ S      G GGG+P+ AQ
Sbjct: 882 STVSGPVGVFLIGSDDEKALAIVSMPTAFVEKKMSAVTWAKSSI-----GKGGGKPNAAQ 936

Query: 877 SG 878
           SG
Sbjct: 937 SG 938


>gi|154337657|ref|XP_001565061.1| alanyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 962

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 267/962 (27%), Positives = 446/962 (46%), Gaps = 118/962 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           VS +R  F+++F+K GH  +P S + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQKFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKTLFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V   Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRVANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++         D EA +LW +   L   +II     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDVKNGLDPDLEAKELWGQF--LPESQIIPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           +++    +EIWNLVFMQFE++       LP+  +DTGMGL
Sbjct: 186 PCSEVHFDRI-GGRNAAGLVNKDDPMVVEIWNLVFMQFERRTDGLLTPLPQKHVDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLRS 281
           ER+ ++LQ   +NYD D++  + +A +  TG +     I +         +RV+ DH+R 
Sbjct: 245 ERLTSILQGVKSNYDTDVWIPIFEAIQTATGYRKSYVEIRSEPDSDALVAYRVVADHIRC 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  + DG++P + GRG+VLRRI+RRA+ Y    LG        L+ ++C  +G  +P L
Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGADPGFFTQLVDSVCASLGPFFPHL 364

Query: 341 I--QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396
              +    I+  L  E++ F KT + GL   +            +++G  AF L+D +G 
Sbjct: 365 KDPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAAGECRANNSRVISGSEAFVLHDRYGF 424

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +    G+  +D+  FN  +     +A   S G  +     I     E      
Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNAEM-----KANQVSAGRVAAAKTFIDAYQLEDL---- 474

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509
                        K+                 +  V AI   +    +     G     +
Sbjct: 475 -------------KKRAIPQTDDGAKYAWEDSTGEVLAIFDKKNSRFISLLEPGNDLGAE 521

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG---ILR 566
           +V ++ + T FYAE+GGQ+ DTG  +     +          G  VH   + +     + 
Sbjct: 522 EVGIILNATNFYAESGGQVYDTGRLVAARDCVFEVKKVYNVGGYVVHVGKLSKDSASPIP 581

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------LGSHVSQNGSCITPDGLRFD 620
               + + +DY+ R  ++ NH+ TH L+  L  +        + V Q GS +  + LRFD
Sbjct: 582 LSALVQMQVDYERRLPIAANHTTTHQLNWTLRRVLEENPANFTEVQQKGSLVMDEMLRFD 641

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            +H   +++ +L  +E  +N+ I   LP     +     +  +G   + G KY D V V+
Sbjct: 642 FSHHTKLSNEDLVRVEKLLNEKIQAGLPVYREEVPLAAASKINGLRQMFGEKYPDPVSVI 701

Query: 680 SVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           S+              +   ++   CGGTH+S+  E     I+SE ++  G+RR+   T 
Sbjct: 702 SIGAPINEMLANPEKEEWRDYAVEFCGGTHLSNLKEAEKAVIISEEALMKGVRRVVVATK 761

Query: 729 QRA-------------RSHLMGQDEKLKSLASF---------------LKVS-QGNVVGR 759
             A                L+ ++  + ++ +                LK + + N+   
Sbjct: 762 AEADKAIKAGAELKGQYDELVKREATVGNIKALSVLNKKVGDSCVPLVLKNAMRDNIDAA 821

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQ 817
           ++++    +       ++  +      + +  A   F  H ++    + + L++  D   
Sbjct: 822 IKQMNASLKLQVAEAKEKAAEAGKALGASYDAAAAPFFVHQMTEFGAEREALQAFSDGFS 881

Query: 818 KKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             +   + + L+G   EK  +++ + T  +  + +AV  A+ S      G GGG+P+ AQ
Sbjct: 882 STVSGPVGVFLIGSDDEKALAIVSMPTAFVEKKMSAVTWAKSSI-----GKGGGKPNAAQ 936

Query: 877 SG 878
           SG
Sbjct: 937 SG 938


>gi|256383814|gb|ACU78384.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384644|gb|ACU79213.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455443|gb|ADH21678.1| alanine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 896

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 285/934 (30%), Positives = 470/934 (50%), Gaps = 100/934 (10%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+FF    H  L + SLIP +DP+L++ NSG+   K  F G++ P  
Sbjct: 1   MKKLSTNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT + 
Sbjct: 61  PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKN 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF
Sbjct: 117 YFDIDKDKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIF 175

Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE      I   L     E +RYIE+WN+VF QF          LP+ +IDTG GLE
Sbjct: 176 YDRGEIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNDNYTELPRKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVN-----------HRVIVDH 278
           R A++ Q    N++ D+F   I+  EQ+T    KY  +N  N            +VI DH
Sbjct: 236 RFASIFQNTPTNFETDIFYPTIKKVEQLTNDQFKYSIDNYFNPNKKQTRINTAFKVIADH 295

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +R++ F I+DG+ P N+ RGY++RR++RR+  + + LG  +  +  L+ ++   M   YP
Sbjct: 296 IRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYP 355

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            LI  K L+E+T++ E+E+F KTL +G  LL+ ++        ++   A  L++++G P+
Sbjct: 356 YLIDKKTLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNTVSDKDALLLFESYGFPI 412

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           +   +I        +DI  F + LE+ +   R     L +   +   F+  +    ++F 
Sbjct: 413 EQTIEIS-ELSNVTVDIEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKV--ESEFT 469

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G+                            ++ V  +    + VE     Q+  V+ D+T
Sbjct: 470 GWSETSRD----------------------NAKVIYMFTDQKQVESITD-QEAFVILDKT 506

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    D ++  + DVQ+      + H I  +G L+    +   +D +
Sbjct: 507 PFYAEKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNI-HRIKVQGTLKVNDLVNCRVDEE 565

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHS TH++H+AL  +LG+ V Q+GS    +GLR D T+ +  T+ EL   ++ 
Sbjct: 566 KRIYTMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNL 625

Query: 639 VNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           V + I   +   T   + E+++    A A    KY++ VRV+       G  SS LCGGT
Sbjct: 626 VLEKIKNKIDRQTYFCSLEESVKKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGT 680

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLAS--------- 747
           HV++T EI    I    S  +G+ RI+ +T  +    +L  Q +  K  A          
Sbjct: 681 HVNNTSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQN 740

Query: 748 --FLKVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-- 789
              LK  Q            + +     ++++ ++ +++   + K+   L   +      
Sbjct: 741 KDLLKNDQLENIYLQIKNITINKDNLLVIKDLLDKLKEINKDYDKKVNDLITANKLLKYK 800

Query: 790 ------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                    ++N +    ++++ K+LK + D L+ K    I++L+  + E    V++ V+
Sbjct: 801 DLTPSLNKDNINEIRLETTDLNIKDLKQLADDLRNKYDDLIVILLSSTSENN-FVVVAVS 859

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           + L +++ A+D+            GGG  ++AQ 
Sbjct: 860 QSLQNKYKAIDIFNNLEGYET--KGGGNANLAQG 891


>gi|66819737|ref|XP_643527.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|74860734|sp|Q86H43|SYAM_DICDI RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|60471622|gb|EAL69578.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 932

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 340/928 (36%), Positives = 474/928 (51%), Gaps = 101/928 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++   +R TFL +F+KNGH+ LPS SL+P ND +L+FTN+GMV FKN FTG E+  Y+ V
Sbjct: 28  TSTKEVRETFLNYFEKNGHKRLPSGSLLPYNDNSLLFTNAGMVQFKNQFTGNEESKYKKV 87

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFGGY  FK  +IQ AWDLLTKE+ 
Sbjct: 88  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGGYNHFKRDSIQHAWDLLTKEYG 147

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFD 178
           L + RL I+V + DEE+ ++W+   GL  DKI+     DNFWSM +  GPCGPCSEIF+D
Sbjct: 148 LPKERLAISVLEGDEESAEIWRNQIGLPNDKIMYKGREDNFWSMGDGPGPCGPCSEIFWD 207

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI----LPKMSIDTGMGLERMA 234
            G+ + G           Y+EIWNLVFMQ+ +  K+   +    LP   +DTGMGLERMA
Sbjct: 208 HGKEVDGER---------YLEIWNLVFMQYNKSGKEGDEMPVDKLPIPCVDTGMGLERMA 258

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMK----------YEGNNIVNHRVIVDHLRSSSF 284
           +VLQ K  NYDIDLF++LI + +++  M                   +RVI DHLRS SF
Sbjct: 259 SVLQGKFTNYDIDLFQNLINSFKEIVTMDVGRAQFQLQQDPQRVETAYRVIADHLRSISF 318

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI+DG++P N GRGYVLR+I+RRA+ Y ++LG+  P +  L P L  EMG  YP+LI+  
Sbjct: 319 LISDGVIPFNIGRGYVLRKIIRRALSYGKILGFNGPFLSTLFPLLEREMGDIYPQLIERS 378

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I   + +E+  F   + RG+  L+  +        LN +  F LY+T+GLPL+ M  +
Sbjct: 379 NEIRNVILNEEGTFYNAIQRGIPYLEEFVQQ----NKLNEESLFLLYNTYGLPLE-MSQV 433

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT----------EKIWFSLKEKYGA 454
              +    ID+   N+ ++E R ++R       S +           EK + S K     
Sbjct: 434 KAKQNNIEIDMDKVNKLIDETREQSRLTWNTSSSSSDQTTQQTTQLPEKTFLSWKSDNIK 493

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
            +FIGY+                      + N  S ++++       +        V + 
Sbjct: 494 PKFIGYN--------------------GCVENDNSKVLRSHFDNDSHL--------VYLS 525

Query: 515 FDQTPFYAEAGGQLGDTGCAI------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            D+TPFY  +GGQ+GD G  I           +      +    + V     ++   +  
Sbjct: 526 LDETPFYGTSGGQVGDVGELINVSSGKNVYRVINTIKPYEGGLVLVVEWDPSQQLASQVY 585

Query: 569 MSLVLTIDYQNRRQLSI------NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L        R   SI      +HSATHLLH AL  ++G  V Q GS +  + LRFD T
Sbjct: 586 QDLKQDSLLNCRVDRSIRNQVAVHHSATHLLHAALRNVIGKSVVQAGSLVGSESLRFDFT 645

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSV 681
           H + +T  +++ IE  VND IA+++ + T  +  E  +  S    L   KY++ VRVVS+
Sbjct: 646 HGQKLTPNQIEQIEQWVNDAIAKDIALNTDEIPYEQASKNSDTLQLFSEKYSELVRVVSI 705

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                   S  LCGGTHV  +  I    I+SESS+ AG RRIEA+ G  A +      + 
Sbjct: 706 PG-----FSKELCGGTHVERSSSIHQFKIISESSVAAGTRRIEAVAGLAATNFFKNHYQL 760

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-------- 793
           +  L++ +     N     E +     K +      KL++    LS              
Sbjct: 761 VHQLSNSINSPIVNFQQSFERLVNTNSKQEKEIFDLKLKIA--QLSSVNYNGQYKSDNGG 818

Query: 794 --VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV-LIVVTEDLLDRF 850
             +    HII   D K    V +   K+  S  I L  ISK  K    L+  +       
Sbjct: 819 EMIPLSLHIIDCEDKKAFTKVTENFAKEFSSSPIQL-TISKGGKVLCQLLSSSSSSSSSL 877

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +A  + +   K +G G GGG   MA + 
Sbjct: 878 SADTVLKQLFKSIGMGKGGGNKLMANAS 905


>gi|331703175|ref|YP_004399862.1| alanyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801730|emb|CBW53883.1| Alanyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 896

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 285/934 (30%), Positives = 470/934 (50%), Gaps = 100/934 (10%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+FF    H  L + SLIP +DP+L++ NSG+   K  F G++ P  
Sbjct: 1   MKKLSTNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT  K
Sbjct: 61  PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF
Sbjct: 117 YFDIDKNKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIF 175

Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE      I   L     E +RYIE+WN+VF QF          LP+ +IDTG GLE
Sbjct: 176 YDRGEIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNDNYTELPRKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVN-----------HRVIVDH 278
           R A++ Q    N++ D+F   I+  E++T    KY  +N  N            +VI DH
Sbjct: 236 RFASIFQNTPTNFETDIFYPTIKKVEELTNDQFKYSIDNYFNPNKKQTRINTAFKVIADH 295

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +R++ F I+DG+ P N+ RGY++RR++RR+  +   LG  +  +  L+ ++   M   YP
Sbjct: 296 IRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYP 355

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            LI  K L+E+T++ E+E+F KTL +G  LL+ ++        ++   A  L++++G P+
Sbjct: 356 YLIDKKTLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNTVSDKDALLLFESYGFPI 412

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           +   +I        +D+  F + LE+ +   R     L +   +   F+  +    ++F 
Sbjct: 413 EQTIEIS-ELSNVTVDVEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKV--ESEFT 469

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G+                            ++ V  +    + VE     Q+V V+ D+T
Sbjct: 470 GWSETSRD----------------------NAKVIYMFTDQKQVESITD-QEVFVILDKT 506

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    D ++  + DVQ+      + H I  +G L+    +   +D +
Sbjct: 507 PFYAEKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNI-HRIKVQGTLKVNDLINCRVDEE 565

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHS TH++H+AL  +LG+ V Q+GS    +GLR D T+ +  T+ EL   ++ 
Sbjct: 566 KRIYTMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNL 625

Query: 639 VNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           V + I   +   T   + E+++    A A    KY++ VRV+       G  SS LCGGT
Sbjct: 626 VLEKIKNKIDRQTYFCSLEESVNKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGT 680

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLAS--------- 747
           HV++T EI    I    S  +G+ RI+ +T  +    +L  Q +  K  A          
Sbjct: 681 HVNNTSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQN 740

Query: 748 --FLKVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-- 789
              LK  Q            + +     ++++ ++ +++   + K+   L   +      
Sbjct: 741 KDLLKNDQLENIYLQIKNITINKDNLLVIKDLLDKLKEINKDYDKKVNDLITANKLLKYK 800

Query: 790 ------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                    ++N +    ++++ K+LK + D L+ K    I++L+  + E    V++ V+
Sbjct: 801 DLTPSLNKDNINEIRLETTDLNIKDLKQLADDLRNKYDDLIVILLSSTSENN-FVVVAVS 859

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           + L +++ A+D+            GGG  ++AQ 
Sbjct: 860 QSLQNKYKAIDIFNNLEGYET--KGGGNANLAQG 891


>gi|224001280|ref|XP_002290312.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335]
 gi|220973734|gb|EED92064.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335]
          Length = 966

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/969 (29%), Positives = 433/969 (44%), Gaps = 97/969 (10%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59
             +R+TF+ +F++NGH    SS  +P +DPTL+FTN+GM  +K +F G   P       +
Sbjct: 17  DKVRSTFISYFERNGHTFWRSSPCVPHDDPTLLFTNAGMNQYKPLFLGTCDPALKMASLK 76

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI++AW  LT+EF 
Sbjct: 77  RATNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEAIEMAWKCLTEEFK 136

Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           LD  RLY T +        D+EA ++W +   L A++++     DNFW M  TGPCGPC+
Sbjct: 137 LDPNRLYATYFGGDESTPCDDEAREIWLQY--LPAERVLPFDAKDNFWEMGATGPCGPCT 194

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           + +    IEIWN VF+QF ++       LP   +DTGMG ER+
Sbjct: 195 EIHYDRIGNRD-ASKLVNADLPDVIEIWNNVFIQFNREADGSLRPLPAQHVDTGMGFERL 253

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSF 284
            ++LQ   +NYD D+F  L  A +++T           +      + +RV+ DH+R+ SF
Sbjct: 254 TSILQGVDSNYDTDIFIPLFDAIQKITGARPYAGKIEKEDPEFIDMAYRVVADHVRTLSF 313

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            IADG +P+N+GRGYVLRR++RRA+ Y R  L         L+  L   MG  +PEL + 
Sbjct: 314 AIADGAVPSNDGRGYVLRRVLRRAVRYGRQNLNAELGFFAQLVRTLVELMGDTFPELREK 373

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  +   +R E+E F KT+D+G+V  +     LG  ++  G+ A  LY + G P+D+ + 
Sbjct: 374 EEYVTAIIREEEESFSKTVDKGIVEFNKRCDALGDVKVFPGEDAHFLYTSMGFPVDLTEL 433

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   RGL  +D+  ++  ++E++  + A  L   S  + K    + E+       G D  
Sbjct: 434 MCEERGLT-LDMEGYDAKMKEEQELSNAAHLAKMSAGSGKDMRLVAEQTSHLVNKGVDAT 492

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA-VSGQKVEVVFDQTPFYA 522
                   +  +              +           V+        V +V D+T FY 
Sbjct: 493 NDDAKYVWNEDLEGSIIKALFIGRNETE-----DGIGFVDSISKENGAVGIVLDKTNFYG 547

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ  DTG               +      +H   V  G +    +    +DY  R  
Sbjct: 548 ESGGQTFDTGSIKTSSGATIEITNVQIYGSFVLHIGDVTEGTVTVNDAATCCVDYVRRAP 607

Query: 583 LSINHSATHLLHHALSTI---------LGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           ++ NH+ TH+L+ AL  +          G+ V Q GS +  + LRFD + S P+T  +L 
Sbjct: 608 IAANHTMTHILNFALRDVLVTRGDADQHGASVDQKGSLVDENKLRFDFSWSGPLTPEQLV 667

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV------------S 680
           ++E    D I   +PV   +   E A   S   A+ G  Y D VRVV            +
Sbjct: 668 AVEKICVDQINSAVPVDNYVAPLEGAQQISSLRAVFGEVYPDPVRVVAVSPSPITSMLEN 727

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
            +      +S   CGGTH+ +T E     ++SE  I  G+RRI  +T + A        E
Sbjct: 728 PQDAQWNKYSVEFCGGTHLKNTSEAQGFVLLSEEGIAKGVRRITGVTMKDAAIATAAASE 787

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEY--------RKLQ---------LIHAKRKLQLNV 783
               L +   +   ++   V+ +  E         +K+Q            A  K     
Sbjct: 788 FEAKLTAAGSLEGLDLEAHVKVLTVEMEGLSISAAKKIQFRDVMGTYGKKVAAWKKANAA 847

Query: 784 ED---------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           E           + +       +      VD K  K+V  A  KKI+   ++ V    + 
Sbjct: 848 EQTATVVEQVIEAANSTEGNKVVVRCDFGVDGKVAKAVSTAYGKKIKDKALLFVTADVDA 907

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP-------HMAQSGGPNGNKAD 886
            +  V+    +      +       +          G           AQS  P     D
Sbjct: 908 DRFMVVAFAPKG--SDVDCKAWVAAAVA--------GTDGKGGGKKDSAQSTVPGVGNID 957

Query: 887 QAIAGVASF 895
             +     F
Sbjct: 958 GVLEKARGF 966


>gi|328872010|gb|EGG20380.1| alanyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 1018

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 325/908 (35%), Positives = 461/908 (50%), Gaps = 91/908 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+TFL +F +NGH+ +  SSLIP ND TL+FTN+GMV FK  F   E P    VTT QK
Sbjct: 36  IRSTFLNYFNENGHKKVDGSSLIPHNDSTLLFTNAGMVQFKQCFAALETPPAPMVTTAQK 95

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDLDQRR 124
           CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFGGY   K  AI+ AW LLT    L   R
Sbjct: 96  CVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGGYKHAKRDAIRHAWQLLTGPMGLPANR 155

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET-GPCGPCSEIFFDQGECI 183
           +  +V + DEEA  +W+   GL+ D+I+R    DNFWSM +  GPCGPCSE+F+D+GE  
Sbjct: 156 IVASVLEGDEEAADIWRTEIGLTDDRILRCGPKDNFWSMGDGAGPCGPCSELFWDRGE-- 213

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                G+  +GERY+EIWNLVFMQ+ + +      LP   +DTGMGLERMA VLQ+K +N
Sbjct: 214 -----GNEMDGERYLEIWNLVFMQYWRDDAGNLTPLPTPCVDTGMGLERMAAVLQDKQSN 268

Query: 244 YDIDLFKHLIQASEQVTGMKYE--------GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Y+IDLF +LI   + V                   + RVI DHLRS SFLIADG++P+  
Sbjct: 269 YEIDLFANLIDGIKSVAEKNDSVFVGKVHADKFETSMRVIADHLRSVSFLIADGVVPSAT 328

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLR+I+RRA+ Y +++G+ +P +  L P L + MG  Y +L Q    I+  + +E+
Sbjct: 329 GRGYVLRKIIRRALSYGQMIGFQQPFLHLLQPLLTSLMGDFYTQLSQRAPQIQNVIYNEE 388

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             F + + RG+  LD ++     DE       F +Y T+GLPL+I +       +     
Sbjct: 389 ILFYQAIQRGVTYLDDLIDSNKLDEW----NVFNIYSTYGLPLEISEVKARQSNINIDMD 444

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
                  E +     +      +  T +I    K +   + F+GY+ L  +  +K     
Sbjct: 445 KVQQFIDETKEKSKSSWKKDQSNNNTNQILQKWKNENIKSNFVGYEKLHCTTRIKAQHFS 504

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                              + VV +  PFYA +GGQ+GD G  +
Sbjct: 505 ------------------------------EEDNLLYVVLEDCPFYAVSGGQIGDKGIIV 534

Query: 536 GDGI------RLQITDVQKKAEGIFV-------HHAIVERGILRTEMSLVLTIDYQNRRQ 582
                      +  T        + V                L+ +  +   +D Q R+Q
Sbjct: 535 TSVGNGENIYNVIDTLKPYDGVQVVVIEFDSTKQRLNQVMDDLKVDNKVDCRVDKQTRQQ 594

Query: 583 LSINHSATHLLHHALST-ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +I+H+ATHLLH AL   +  + V Q GS + P+ LRFD T    +++ ++ +IE  VN 
Sbjct: 595 TAIHHTATHLLHSALRKELGENSVVQAGSYVGPESLRFDFTAVGKLSNKQITNIEQTVNQ 654

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I Q++P+  + M++ DA+ + A  L   KY D VRVVSV        S   CGGTHV  
Sbjct: 655 AIQQDIPLDVQEMSQGDAVKTDAIQLFSEKYGDSVRVVSVPG-----VSKEFCGGTHVGK 709

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I L  IVSE+SI AG RRIEA  GQ A + L      +  LA+ L V    V   VE
Sbjct: 710 TGDIQLFRIVSETSIAAGTRRIEARAGQAAATWLDSFKSTVDGLATKLGVPTNIVGKHVE 769

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHK-------------IADVNFMSHIISEVDSKE 808
            + +  ++L+   ++ + Q+    +  H                 ++ +S   + +D   
Sbjct: 770 SLIDNKKQLEKQVSELQQQILFNSIKTHNGKIQLDGNNNNSIACSLHLLSGQSTTIDKNT 829

Query: 809 LKSVMDALQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAK-VL 863
           L+ +   L K   + I I+L   + + K  ++  V   L  +    NA  L +      +
Sbjct: 830 LQEISKKLAKTQPNHIHILLTTEATDNK--LICTVGSQLEKQEVSANADKLLKQLLTNTI 887

Query: 864 GGGGGGGR 871
             G GGG+
Sbjct: 888 KFGKGGGK 895


>gi|298708166|emb|CBJ30506.1| Alanyl-tRNA Synthetase [Ectocarpus siliculosus]
          Length = 992

 Score =  625 bits (1612), Expect = e-176,   Method: Composition-based stats.
 Identities = 272/938 (28%), Positives = 430/938 (45%), Gaps = 102/938 (10%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
            S +R +F+ FF +K+ H    SS ++P +DPTL+F N+GM  FK +F G   P      
Sbjct: 33  ASRVRDSFISFFTEKHDHTFWKSSPVVPHDDPTLLFANAGMNQFKPLFLGTADPALPLSK 92

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+ LT  
Sbjct: 93  LTRATNSQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGNWSFGSYFKEEAIGYAWECLTTV 152

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY T +          DE+A K+W K   L   +++  +  DNFW M + GPC
Sbjct: 153 YKLDPSRLYATYFGGDEKLRVGADEDAKKIWLKY--LPESRVLPFSLADNFWEMGDVGPC 210

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC EI +D+           + +    IEIWN+VF+Q+ ++N      LP   IDTG+G
Sbjct: 211 GPCVEIHYDRIGGRDAAKD-VNMDKPEVIEIWNVVFIQYNRENDGSLKELPNKHIDTGLG 269

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLR 280
            ER+A++LQ K +NYD D+F  + +A    TG +            N  + +RV+ DH+R
Sbjct: 270 FERLASILQGKMSNYDTDVFVPIFEAIRSATGARPYTGKVGEEDSDNMDMAYRVVADHIR 329

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  I DG  P+N+GRGYVLRR++RRA+ Y +  LG        L+P +   M   +PE
Sbjct: 330 TLTIAITDGCTPSNDGRGYVLRRVLRRAIRYGQQVLGGKPGFFHTLVPVVVGLMKGIFPE 389

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L+ A+  +   ++ E+  F KTLD+GL   + V + LG  ++  G  AF+LY + G PLD
Sbjct: 390 LVDAEARVTAVIKDEEMSFNKTLDKGLKEFNKVAAALGDSKVFPGTAAFQLYSSMGFPLD 449

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           ++  +   +GL+ +D+  F+Q + ++++++        +   + +               
Sbjct: 450 LLTLMAEEKGLS-VDVEGFDQKMSDEKTKSNQARSNQKAAGGKPMIL------------- 495

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-------------EIVEEAV 506
            +  +     K D +              ++ V A+                   V +  
Sbjct: 496 -EAEQMDWLSKRDTEATEASGRYTWHQQPAAKVLALFVGKGEGEDGVGFVPSASAVADEA 554

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF-VHHAIVERGIL 565
             Q V VV D T FYAE GGQ+ D G              Q  + G + +H   V+ G L
Sbjct: 555 DQQTVGVVLDCTSFYAEGGGQIYDIGELSLSDGSGSFAVRQVSSFGAYTLHIGQVKAGTL 614

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH---VSQNGSCITPDGLRFDVT 622
                +V  +DY+ R  ++ NH+ TH+L+ AL  +L        Q GS +  + LRFD +
Sbjct: 615 SVGSDVVCKVDYERRANVAPNHTMTHVLNFALRKVLDPSDGMCDQKGSFLDDEKLRFDFS 674

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681
            S  +T+ ++  +ED VND I +NLPV   +   E A        + G +Y D VRV+S+
Sbjct: 675 WSGSLTAEQVADVEDLVNDKINKNLPVYAFVAPLEQAQRIQSLRGVFGERYPDPVRVLSI 734

Query: 682 E-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                              S   CGGTH+S+T E     I+ E+ I  G+RRI A+T   
Sbjct: 735 GQDVPAMLEDPENSAWSDVSVEFCGGTHLSNTQEAETFVILEEAGIAKGVRRIVAVTRGL 794

Query: 731 ARSHLMGQDEKLKSL-------------------ASFLKV-----SQGNVVGRVEEIWEE 766
           A + +       + L                   A          ++  +  R+  + ++
Sbjct: 795 ALAAVERAKAFEQQLDVADGIEDISLDTTVRRLGAELDGAVISVKTKNKLRARLATLVQK 854

Query: 767 YRKLQLIHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + ++         E     +      +       D+K    ++  + K   
Sbjct: 855 AKALKKKVMEERVGQAVTVGKAEAEKTKEAGGTQLVFRADFGCDAKSAVKILAEVSKACP 914

Query: 822 S-GIIMLVGISKEKKASVLIV-VTEDLLDRFNAVDLAR 857
               +ML    +E    +    +      + +     +
Sbjct: 915 ELTSMMLFTADEEADRYLCCGLIPNSKAAKKDTNKWVQ 952


>gi|224436671|ref|ZP_03657675.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313143169|ref|ZP_07805362.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313128200|gb|EFR45817.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
          Length = 992

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 274/1022 (26%), Positives = 443/1022 (43%), Gaps = 158/1022 (15%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQ 59
           M     IR  +LEFF+ NGH++  S  L+P +D +L+FTN+GMV FK+IFTG+   P   
Sbjct: 1   MK---DIRALYLEFFKSNGHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPSPN 56

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             T+ Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+   
Sbjct: 57  IATSSQLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEILG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D+  LY+T+++ D+EA++LW +   + + +I R+   DNFW M +TGPCGPCSEI+ DQ
Sbjct: 117 FDKSLLYVTIHESDDEAYELWHE--HIESSRIKRMGDKDNFWQMGDTGPCGPCSEIYVDQ 174

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G E   G       EG+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + +
Sbjct: 175 GAEFFNGEEDYFGGEGDRFLEIWNLVFMQYERSADGSLTPLPKPSIDTGMGLERVIALKE 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--------------------EGNNIVNHRVIVDH 278
            + NN+D  LF  ++Q  +++T   Y                       +I + RVI DH
Sbjct: 235 GEINNFDSSLFAPIMQCIKELTSKSYYRDSVLLKNTMGFAKDIIDSCKKDIASFRVIADH 294

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R+ +FL+A G+    EGRGYVLRRI+RRA+ +  LLG  +  +  ++  +C  MG  Y 
Sbjct: 295 ARAVAFLLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDSMGGHYS 354

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL---------------- 382
            LI+ K  ++E  ++E+ERF +T++ G+ L +  L  L    +L                
Sbjct: 355 YLIERKNALQEQCKAEEERFFETIESGMALFNAELEKLRGYSVLSDKSANLRSPTAALTS 414

Query: 383 -------------------------------------NGDVAFKLYDTHGLPLDIMQDIL 405
                                                +G++AFKLYDT+G PLD+ QD+L
Sbjct: 415 SKLLVGSLGNADFSSQSLECQDSHKVDSNKTKEAMHFSGEIAFKLYDTYGFPLDLTQDML 474

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL G+D+  F + ++EQ+ R++AH  G G    +  + +L  ++G  +F+GY+ +  
Sbjct: 475 RELGL-GVDMQGFEKCMQEQKERSKAHWKGSGDSVKDGDFNALLSEFGENEFVGYESI-- 531

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   S + A++    + VE   +GQ+  ++ + TPFY E+
Sbjct: 532 ---------------------STESKILALLDSNFKRVESLQAGQEGWMMLESTPFYPES 570

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GG +GD G                   G FV        +  + +    +          
Sbjct: 571 GGPIGDKGVLFSLEHSACNNSSLGNHSGDFVDFRGAADSMSSSPLKSTKSPTSNTANTRI 630

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           ++ S                  +         +   +  +  +  A++ S    +    +
Sbjct: 631 VDSSKVDSSSPQNIIAKVLDTQKYFGLNLSKVVATSMLKTGDLVKAQVDSSRFEIIKHHS 690

Query: 645 QNLPVVT-------RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
               +           + +  ++           +   + V  +E  +  V+S       
Sbjct: 691 ATHLLHYALRQILGSHIAQAGSLVEANRLRFDFSHPKALSVNDLEQIEALVNSKITESSP 750

Query: 698 HVSSTGEIMLLYIV-----SESSIRAGIRRIEA-----ITGQRARSHLMGQDE--KLKSL 745
            V  T  I                   +R I       + G     +         ++  
Sbjct: 751 QVCETMGIDQAKAKGAMALFGEKYGESVRVITLGDSIELCGGIHIHNTAEIGSFYIVRES 810

Query: 746 ASFLKVSQGNVV----------GRVEEIWEEYRKLQLI-----HAKRKLQLNVEDLSC-- 788
           +    V +   V            +E I     +L+        AK +  L     S   
Sbjct: 811 SVSSGVRRIEAVCGKAAYHYGKAALESIKSLKEQLKAQDVLQGVAKLQNALKEARESANK 870

Query: 789 ----------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                      ++  V  +   +  V++KE K ++D  + + +  + +L+      K S+
Sbjct: 871 AKQSVKSLDYEEVNGVKLIVLKLDLVEAKEAKDIIDRAKNENEK-VAILLVTESGGKVSL 929

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP--NGNKADQAIAGVASFL 896
              V    +    A    +  A++L GG GGGR   A +GG     NK  +A+    +  
Sbjct: 930 TAGVKG--VSSLKAGAWVKQVAQIL-GGNGGGRDDFATAGGKVTESNKVQEALDLAKNIA 986

Query: 897 KK 898
           ++
Sbjct: 987 RE 988


>gi|27904852|ref|NP_777978.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29427399|sp|P59420|SYA_BUCBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|27904250|gb|AAO27083.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 880

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 307/915 (33%), Positives = 480/915 (52%), Gaps = 63/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE-KPVYQAV 61
             + I   FL FF K GH +LP S+LIP NDP+L+FTNSGM  FK+IF  +     Y  V
Sbjct: 4   TSNEICQMFLNFFYKKGHTILPGSTLIPNNDPSLLFTNSGMNQFKDIFIQKNYNFKYNRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT+Q C+R GGKHND +NVG T +HHTFF+MLGNFSF  YFK  AI  AW  LT  ++ +
Sbjct: 64  TTLQNCLRTGGKHNDFENVGYTPQHHTFFQMLGNFSFRDYFKLDAILYAWKFLTSKEQLN 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCS 173
           L + +L+ITVY +D E++ +WK I  +   KII+I         DNFW M E GPCGPC+
Sbjct: 124 LSKEKLWITVYQDDLESYNIWKNIIKIDKHKIIKIGNKYNSSDSDNFWQMGEIGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  +PG +PG++     R++EIWN+VF+QF + +  +   L +  +DTGMGLER
Sbjct: 184 EIFYDYGNTLPGTIPGNNGCNVPRFVEIWNIVFIQFNKLSNGKLIKLTESYVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ V+   T+NY+IDLFK LI+   +++ +        +  VI DH+R+ SF+I++ I+P
Sbjct: 244 ISAVINNVTSNYEIDLFKPLIKHILELSTV--NTPKNKSIYVIADHIRACSFIISENIIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE  GYVLRRI+RRA+ +   LG     +  L+P L   MG   P L + +  IE  L+
Sbjct: 302 SNEKHGYVLRRIIRRAIRHGHNLGIKSLFLHKLIPTLINTMGKFNPVLKKQQNKIENVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+++F +TL++GL LL   L  +    +L+G +AF LYDT G P+D+  DI     ++ 
Sbjct: 362 LEEQKFIETLEKGLKLLHKELKQIQPKHVLSGKLAFNLYDTFGFPIDLTIDICKEHNISI 421

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
             +  F + L + +  +          T    +         T F+GY   +    +   
Sbjct: 422 NIME-FKRYLNQHKQNSIN---KNFLNTRNAYYIEDNNINIKTHFVGYQFNKTQSIINNI 477

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                +K                        +    Q   +  ++TPFY E+GGQ+GD+G
Sbjct: 478 IIKNNKKTL----------------------QINDYQNSILFLNETPFYGESGGQIGDSG 515

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  +  + +  K    I  H   +  G L    ++   I+   R+ + INH+ATHL
Sbjct: 516 IIHNKTGKFIV-NCTKMFGNIIGHVGTLASGYLNIHDTVCAEINLPKRKSIQINHTATHL 574

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH +L  ILG HV Q GS I+   L+FD +H+ P+   E++ +E+ +N  I +N+ V T 
Sbjct: 575 LHASLRKILGKHVFQKGSFISDQSLKFDFSHNAPMNLREIQEVENIINKKIQKNISVSTT 634

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +   ++       AL   KY D+VR++S+        S  LCGGTH   TG+I L  I S
Sbjct: 635 LTTLQEIQNKKVMALFQDKYKDKVRMISI-----NDFSVELCGGTHTKYTGDIGLFKITS 689

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E SI +GIRRIEA+TG+ A S +  Q++ + ++A+ L     N+   + ++      L+ 
Sbjct: 690 EISISSGIRRIEAVTGKHAISIIHHQEKTINNIANMLNSKTNNIEQTITKLLNNNIHLKK 749

Query: 773 IHAKRKLQ---LNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                  Q     V  LS H   I DVN +   +   +   L++++D L+ + +   +++
Sbjct: 750 QIYTLYNQNIYNIVNSLSKHNILIKDVNIIIKNLKNENLLSLRNIVDKLKNRFK-CSVII 808

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLS------AKVLGGGGGGGRPHMAQSGGPN 881
           +      K+ +++ VT ++ DR +A+D+                       ++A+ G  N
Sbjct: 809 ISSIINNKSIIIVGVTRNVTDRISALDILNKLTKKLGGRGGGKN-------NIAEGGIKN 861

Query: 882 GNKADQAIAGVASFL 896
                  +  + +++
Sbjct: 862 LISLPIELKKIKTWI 876


>gi|154321327|ref|XP_001559979.1| hypothetical protein BC1G_01538 [Botryotinia fuckeliana B05.10]
 gi|150852076|gb|EDN27268.1| hypothetical protein BC1G_01538 [Botryotinia fuckeliana B05.10]
          Length = 952

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 293/965 (30%), Positives = 458/965 (47%), Gaps = 104/965 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE-----KPVYQAV 61
           +R  FL FF+KN H ++PSSS++P NDPTL+FTN+GM  FK IF G           +  
Sbjct: 15  VRKQFLSFFEKNAHSVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVGKTDDMAQLKRA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK         DLD+VG+ + HHTFFEMLGN+SFG YFK  AI +AW+LLTK + LD
Sbjct: 75  VDTQK---------DLDDVGKDSYHHTFFEMLGNWSFGDYFKADAIGMAWELLTKVYGLD 125

Query: 122 QRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ D         EA  LW K +G+  D I+     DNFW M ETGPCGPCS
Sbjct: 126 SDRLYVTYFEGDAENNVPADTEAKNLWLK-AGVKEDHILTGNMKDNFWEMGETGPCGPCS 184

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN+VF+QF++Q  +    LP   IDTGMG ER+
Sbjct: 185 EIHYDRIGGGRNAAHLVNQDDPNVLEIWNIVFIQFDRQKDRSLKTLPAKHIDTGMGYERL 244

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSSF 284
            +VLQ+K++NYD D+F  L    ++V          G          +RV+ DH+R  +F
Sbjct: 245 VSVLQDKSSNYDTDVFSPLFAKIQEVTNARPYTDKYGKDDTDGIDTAYRVVADHIRLLTF 304

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I+DG +P NEGRGYV+RR++RR   YAR     E       +LPAL  +MG  +PE+++
Sbjct: 305 AISDGGVPNNEGRGYVVRRVLRRGSRYARKYFNAEIGSFFSKILPALVEQMGEQFPEIVK 364

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDI 400
            +  ++E L  E+E F +TLDRG  + +   +   K     L+G   ++LYDT G P D+
Sbjct: 365 KQQDVKEILDEEEEAFARTLDRGEKMFEKYAAQAIKTNTKKLSGADVWRLYDTFGFPEDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   RG     + +    +E  + +AR  S  +           + +          
Sbjct: 425 TKIMAEERG-----LETDEGEIEIAKEKAREASKSVKEAAHTFAKLDVHQI--------- 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   +                   +  ++ I      ++      + +   ++ D+
Sbjct: 471 ------AELDNMGIPRPNDDAKFSKGDSTGKIQLIYDGKNFLKSTADLPNDKPFGILLDK 524

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ+ DTG  I DG+        +   G  VH+  ++ G  +    ++   D 
Sbjct: 525 TNFYAEQGGQVFDTGKIIIDGVAEFKVLDTQAYGGYIVHNGYMDYGDFKAGDEVICEYDE 584

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R+ +  NH+ TH+L+HAL   LG  ++Q GS +  + LRFD +H   +T  ELK +ED
Sbjct: 585 LRRQPIRNNHTGTHILNHALREHLGEDINQKGSLVDQEKLRFDFSHKAQVTLPELKKVED 644

Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVR-----------VVSVEYED 685
           + N  I QN  + ++ +         G  A+ G  Y + VR           +   +  +
Sbjct: 645 SANSYIKQNCKIYSKDVDLDIAKGIEGVRAVFGETYPNPVRVVSVGVEVDVLLAEPKNPE 704

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------------ 733
               S   CGGTHV  TG I  L IV ES I  GIRRI A TG  A              
Sbjct: 705 WRKVSVEFCGGTHVDQTGIIKDLVIVEESGIAKGIRRIIAYTGDAAHEVQRIAMEFGKRI 764

Query: 734 -------HLMGQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
                  H + +++++KS  + L       +++ ++  +  ++ ++    Q    K + +
Sbjct: 765 AALDAMPHGVEKEQEVKSTQNDLNHLTISVLAKEDLKKKFTKVQKDVLDEQKKKQKAESK 824

Query: 781 LNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
             ++ ++             +++ +    +SK +  VM+  + K +   + L G S  + 
Sbjct: 825 TALDTVTAYFADSKNKDSTAYIAQLPISANSKAIADVMNHFKSKAKDKTVYLFGGSASEG 884

Query: 836 ASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           A V  + V T+      +A   A   ++V+GG  GG  P      G N +K + A+A   
Sbjct: 885 AVVHGVYVGTDAASKGVSAEQWAAAVSEVVGGRSGGKEPTR-TGQGTNPDKIEDAVAVAE 943

Query: 894 SFLKK 898
            +  +
Sbjct: 944 KWFAE 948


>gi|83319899|ref|YP_424149.1| alanyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|123535930|sp|Q2SSW4|SYA_MYCCT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83283785|gb|ABC01717.1| alanyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 896

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 285/935 (30%), Positives = 469/935 (50%), Gaps = 102/935 (10%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+FF    H  L   SLIP +DP+L++ NSG+   K  F G++ P  
Sbjct: 1   MKKLSTNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT + 
Sbjct: 61  PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKN 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF
Sbjct: 117 YFDIDKNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSKKTNFWDVGQ-GPCGPNTEIF 175

Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE      I   L     E +RYIE+WN+VF QF          LP+ +IDTG GLE
Sbjct: 176 YDRGEIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVN-----------HRVIVDH 278
           R A++ Q    N++ D+F   I+  EQ+     KY  +N  N            +VI DH
Sbjct: 236 RFASIFQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADH 295

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +R++ F I+DG+ P N+ RGY++RR++RR+  +   LG  +  +  L+ ++   M   YP
Sbjct: 296 IRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYP 355

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            L+  K L+E+T++ E+E+F KTL +G  LL+ ++        ++   A  L++++G P+
Sbjct: 356 YLVDKKSLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNTVSDKDALLLFESYGFPI 412

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           +   +I        +DI  F + LE+ +   R     L +   +   F+  +    ++F 
Sbjct: 413 EQTIEIS-ELSNVTVDIEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKV--ESEFT 469

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G+  +                         ++ V  +    + VE     Q+V V+ D+T
Sbjct: 470 GWSEISRD----------------------NAKVIYMFTDQKQVESITD-QEVFVILDKT 506

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    D ++  + DVQ+      + H I  +  L+    +   +D +
Sbjct: 507 PFYAEKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNI-HRIKVQDTLKLNDLINCRVDEE 565

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHS TH++H+AL  +LGS V Q+GS    +GLR D T+ +  T+ EL   ++ 
Sbjct: 566 KRIYTMKNHSGTHMIHYALREVLGSSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNL 625

Query: 639 VNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           V + I   +   T   + E+++    A A    KY++ VRV+       G  SS LCGGT
Sbjct: 626 VLEKIKNKVDRQTYFCSLEESVKKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGT 680

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLAS--------- 747
           HV++T EI    I    S  +G+ RI+ +T  +    +L  Q +  K  A          
Sbjct: 681 HVNNTSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQN 740

Query: 748 --FLKV---------------SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH- 789
              LK                ++ N++  ++++ ++ R L   + K+   L   +     
Sbjct: 741 KDLLKNDQLENIYLEIKNITINKDNLI-LIKDLLDKLRDLNKDYDKKVNDLITANKLLKY 799

Query: 790 -------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
                     +VN +    ++++ ++LK + D L+ K    I++L+  + E    +++ V
Sbjct: 800 KDLTPSLNKDNVNEIKLETTDLNIRDLKQLADDLRNKYNDLIVILLSSTNENN-FIVVAV 858

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           ++ L +++ A+D+            GGG  ++AQ 
Sbjct: 859 SQSLQNKYKAIDIFNNLEGYET--KGGGNANLAQG 891


>gi|291519140|emb|CBK74361.1| alanyl-tRNA synthetase [Butyrivibrio fibrisolvens 16/4]
          Length = 795

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 295/823 (35%), Positives = 436/823 (52%), Gaps = 50/823 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151
           MLGNFSFG YFK  AI  +W+ LT+   LD  RLY ++Y EDEEAF++W K  G++ ++I
Sbjct: 1   MLGNFSFGDYFKHEAIAWSWEFLTEVLKLDPNRLYPSIYGEDEEAFEIWTKEVGVAPERI 60

Query: 152 IRI------TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGERYIEIWNL 203
            R          DNFW     GPCGPCSEI++D+GE    G P      + +R++E+WN 
Sbjct: 61  TRFYRDPETGECDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPDCKVGCDCDRFMEVWNN 119

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           VF QF          L + +IDTGMGLER+A V+Q+  + +DID  K +     +++G K
Sbjct: 120 VFTQFNGDGHGGYEELAQKNIDTGMGLERLAVVMQDVDSVFDIDTMKAIRDKICEMSGKK 179

Query: 264 YEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
           Y+ +  + V+ R+I DH+RSS+FL++DG+ P+NEGRGYVLRR++RRA  + R LG     
Sbjct: 180 YQVDALDDVSIRLITDHIRSSTFLVSDGVTPSNEGRGYVLRRLIRRAAKHGRALGIQGSF 239

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKD 379
           M  L   +  E    YPEL + +  I +TL +E+E+F KT+D+GL +L G+   L     
Sbjct: 240 MAKLSETVINECKDGYPELWEKREFIFKTLTAEEEQFNKTIDKGLEILAGMEEKLVAAGS 299

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
           + L+G+  FKLYDT+G P+D+  +IL  +G    D   F   +EEQR +ARA        
Sbjct: 300 KELSGEDTFKLYDTYGFPVDLTAEILEEKGFT-YDAAGFEACMEEQRQKARAARKETNYM 358

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
             +   +   +    ++F+GYD       +                              
Sbjct: 359 GADASVYDDIDLSVTSEFVGYDNTTSESTVTVLTTETE---------------------- 396

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            IV+    G    ++  +TPFYA  GGQ+GDTG          + D  K   G   H   
Sbjct: 397 -IVDTLAEGMIGTIIVPETPFYATMGGQIGDTGVISTANGEFTVKDTIKLKGGKIGHVGE 455

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +  G+++    + LT+D + R ++  NHSATHL+  AL  +LG+HV Q GS    D  RF
Sbjct: 456 MTSGMIKVGEKVTLTVDAERRARICKNHSATHLMQKALREVLGTHVEQKGSYQDADRTRF 515

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +H   +TS E+  +E  VND IA+ L V T IM+ ++A  SGA AL G KY + VRVV
Sbjct: 516 DFSHFSAMTSEEIAKVEKMVNDKIAEGLAVTTAIMSIDEAKKSGAMALFGEKYGETVRVV 575

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +     G  S  LCGGTHVS+T EI    I+SES + AG RRIEAITGQ    +    +
Sbjct: 576 KM-----GDFSVELCGGTHVSNTSEISAFKILSESGVAAGTRRIEAITGQAVFEYYADLE 630

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADV 794
            KL + A+ LK     V  ++  + ++ ++        K +     +     S  ++  V
Sbjct: 631 AKLNAAAAALKCKPSEVEEKIAHLQKQLKETNSELESLKAKAAQAAVGDVMDSVVEVKGV 690

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV-VTEDLLDRFNAV 853
             ++  ++ VD   L+ + D L+ K+  G+I+L     + K +++++          +A 
Sbjct: 691 KLLATSVTGVDMNGLRDLGDDLKTKLGEGVIVLAS-DCDGKVNLVVMATDAAQAAGAHAG 749

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +L +  A  +GGGG GGRP+MAQ+GG N      A+    S L
Sbjct: 750 NLIKAIAPKVGGGG-GGRPNMAQAGGKNPAGIADALNEAKSVL 791


>gi|162447763|ref|YP_001620895.1| alanyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|205829962|sp|A9NGN9|SYA_ACHLI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161985870|gb|ABX81519.1| alanyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 851

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 311/928 (33%), Positives = 458/928 (49%), Gaps = 112/928 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR T+L FF+  GH + PS+SLIP +DPTL++ N+G+ P K  F G E P  + +
Sbjct: 1   MTSEQIRQTWLNFFKDKGHIIEPSASLIPVDDPTLLWINAGVAPLKKYFDGTETPKSKRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T +QK +R     ND+DNVG+T RHHTFFEM+GNFS G YFK+ AI+  ++LLT  K FD
Sbjct: 61  TNIQKSIRT----NDIDNVGKTARHHTFFEMMGNFSIGDYFKKEAIEFGFELLTSPKYFD 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +   +LY+T Y  D EA   W K+ G+  D +I +    NFW +   GP GP +EIFFD+
Sbjct: 117 IPLDKLYMTYYPTDVEAKNTWLKL-GVKEDHLIPV--EGNFWEIG-AGPSGPDTEIFFDR 172

Query: 180 GECIPGGLPGSSEEG---ERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERM 233
           G       P    +    ER+IEIWN+VF Q+    K    E   LP  +IDTG GLER 
Sbjct: 173 GTSYDLRGPELIRDDIENERFIEIWNIVFSQYNADPKLKRSEYKELPNKNIDTGAGLERF 232

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ    N++ DL   +I   E ++G+KY+G   +  +VI DH+++  F I+DG   +
Sbjct: 233 ACVLQGTKTNFETDLHYPVILKVESLSGVKYDGQ--MAFKVISDHIKTLVFAISDGANLS 290

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ Y + +G+  P +  L+  +   M + Y  LI+  +++++ +  
Sbjct: 291 NEGRGYVLRRILRRAVKYGKSIGFDAPFLHLLVDTVVDMMSNFYTNLIETAVIVKKIILK 350

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F  T+  G   L   +        L+G+ AFKLYDT+G P+++  +     G+  +
Sbjct: 351 EEEKFFSTILDGEKHLLQSIKD----GKLSGEDAFKLYDTYGFPIELTIEYAEEHGIT-V 405

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           DI  FN+ALE Q+SR+R       S   +    +L      ++F+GYD L+         
Sbjct: 406 DIKGFNEALEVQKSRSRDARKVTHSMKGQD--EALLNFDVPSEFVGYDYLQT-------- 455

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S V  +  QG             +V D+TPFYA +GGQ+ DTG 
Sbjct: 456 ---------------ESKVIKVFDQG-------------IVLDKTPFYANSGGQISDTGS 487

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G  +R  I     +   +       E         ++  ++   R     NH+ATHLL
Sbjct: 488 INGLVVRDVIKLPHGQHLHLI------ETDAFTEGDEVLCIVNQDKRHHTMKNHTATHLL 541

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           + AL   LGSHV Q GS      L FD+ H + I   E+ ++E  V   I + + VVT +
Sbjct: 542 NQALKDTLGSHVKQQGSYNGDLKLTFDINHYETIKDEEILTVEKIVQQKIKEQIDVVTHV 601

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +  ++A   GAA   G KY D VRVV     D G  S   CGGTHV +T +I    I S 
Sbjct: 602 LPIDEAKKLGAAMQFGEKYGDIVRVV-----DVGSWSMEFCGGTHVKNTSDIKNFMITSV 656

Query: 714 SSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASFLKVSQGN-----VVGRVEEIWE 765
            SI +G  R EAITGQ   + +  +    + +      +K    N     +        +
Sbjct: 657 ESIGSGTYRFEAITGQVLSQVKKIVQNLLDMIHQHIEKIKSLDENHNLKPLPELTGSYQD 716

Query: 766 -------------EYRKLQLIHAKR---KLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
                        E + ++     +   ++ L  +      I    ++      +    L
Sbjct: 717 IINLRLYNQYISNESKVVEKQLEAKLIDQIILQADTFIPKTIEPTTYIYS--DNLPQSSL 774

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           K ++D L  KI++  ++L+ IS E KAS L+  + +      A ++     KVL  G GG
Sbjct: 775 KPLIDVLYDKIKADTVVLLNIS-EDKASYLVKSSVN-----EARNVINELNKVL-DGRGG 827

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G+P  AQ G        QA+  V  FLK
Sbjct: 828 GKPDFAQGG-------TQALDKVQMFLK 848


>gi|330897295|gb|EGH28714.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 642

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 310/680 (45%), Positives = 409/680 (60%), Gaps = 48/680 (7%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
           Y    T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  
Sbjct: 1   YTRAVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSE 60

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGP 168
           K  +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGP
Sbjct: 61  KWLNLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGP 120

Query: 169 CGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CGPCSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTG
Sbjct: 121 CGPCSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTG 180

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287
           MGLER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIA
Sbjct: 181 MGLERVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIA 238

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  I
Sbjct: 239 DGVLPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHI 298

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E  L+ E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   
Sbjct: 299 ERVLKGEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARE 357

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           R L  +D   F + ++ QR RAR+ S           + SL +   ATQF GY    G  
Sbjct: 358 RNLT-LDEAGFEREMDAQRVRARSASSFGM------DYNSLVKVDVATQFTGYSATTG-- 408

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                S+ V A+ ++G+ V     G++  V+ D TPFYAE+GGQ
Sbjct: 409 ---------------------SASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQ 447

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G       R  ++D  K     F+HH +V  G L     +   +  + R    +NH
Sbjct: 448 IGDSGFLQAGDARFDVSDTTKTGG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNH 506

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N 
Sbjct: 507 SATHLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNT 566

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V+T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L
Sbjct: 567 EVMTEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIAL 622

Query: 708 LYIVSESSIRAGIRRIEAIT 727
             IVSE  + AG+RRIEA+T
Sbjct: 623 FKIVSEGGVAAGVRRIEAVT 642


>gi|50365429|ref|YP_053854.1| alanyl-tRNA synthetase [Mesoplasma florum L1]
 gi|59798527|sp|Q6F0K3|SYA_MESFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50363985|gb|AAT75970.1| alanyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 892

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 292/936 (31%), Positives = 458/936 (48%), Gaps = 105/936 (11%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+FF++  H  L   SLIP  DP+L++ NSG+   K  F G++ P  
Sbjct: 1   MKKLTTNEIRKMWLDFFKEKNHHFLEPVSLIPVEDPSLLWINSGVATLKPYFDGRKTPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  K
Sbjct: 61  PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAISFAWELLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +   +LYITV++ED EA++ W    G+  D I R+T + NFW + + GPCGP +EIF
Sbjct: 117 WFAIPVEKLYITVFNEDIEAYEYWINDIGIKQDHIFRLTRDTNFWDVGQ-GPCGPNTEIF 175

Query: 177 FDQGECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           FD+GE       G        E +RYIEIWN+VF QF          LP+ +IDTG GLE
Sbjct: 176 FDRGEKWDKENIGPRLLAEDIENDRYIEIWNIVFSQFNNDGFNNYSELPRKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIV-----------NHRVIVDH 278
           R+A++ Q+   N++ D+F   I+  E +     KY   N               +VI DH
Sbjct: 236 RIASIFQDTPTNFETDIFWPTIKQIENICDANFKYSIENYFDEKAEQTKINTAFKVIADH 295

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +R++SF IADG+ P N+ RGY++RR++RRA+     LG   P +  L+  +   M   YP
Sbjct: 296 VRATSFAIADGVFPGNKDRGYIIRRLIRRALMKGMELGINGPFLSTLVINVIDVMKDFYP 355

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            L++ + LIE T+  E+E+F KTL +G   L+ ++ +   D+ + G  A  L++++G P+
Sbjct: 356 YLLEKQNLIETTILIEEEKFLKTLSKGYEALNKMIEN---DKKVTGKNALLLFESYGYPI 412

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           +     +       ++I  FN  LE+ + +AR           +K      +    ++F 
Sbjct: 413 EQTI-EIAEDRKVKVEIEEFNSLLEQAKEQARNARK--DLKAWDKQNEIFTKINVESEFT 469

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G++                           ++ +  I    EI+ EA   ++V V+ D+T
Sbjct: 470 GWEETSHK----------------------NAKIVYIFTDDEILTEATD-KEVYVILDKT 506

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D G  +    R ++ D Q+      + H I+  G ++    +   +D  
Sbjct: 507 PFYAEKGGQAADKGYLVNKEARCEVIDTQQGPNHQHI-HKILLDGSIKIGDQIDAFVDET 565

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHS THL+H AL  +LG  V Q+GS     GLR D T++  I + EL + E  
Sbjct: 566 KRTLTMKNHSGTHLIHSALRVVLGETVMQSGSYNDEHGLRMDFTYNDSIKAEELIAAEKL 625

Query: 639 VNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           V D I + +       + +DA++  GA A    KY+D VRVV       G  SS LCGGT
Sbjct: 626 VLDKINEKINREVYFCSMKDAVSKYGALAFFTEKYDDIVRVVKF-----GDFSSELCGGT 680

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLASFLKVSQGN- 755
           HV +T +I    I    S  +G+ R++ +T ++A   +L  +  KL  L         N 
Sbjct: 681 HVDNTIDIEDFMITGLESKGSGVYRVKCLTSKKAINEYLNTEFNKLLKLIQEQNSKYENT 740

Query: 756 ------------VVGRVEEI--WEEYRKLQLIHAKRKLQLNVEDLSCHKI---------- 791
                       V   V +    E  ++L+LI  K    L + +     +          
Sbjct: 741 KLIQADQNIENIVKESVTKTISKESIQELKLILEKLSAALKIYERKIEDLLTSKKLEQFK 800

Query: 792 --------ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                     V  +   ++ ++ K++K+++D  + K +  II+L   ++E    V++ V+
Sbjct: 801 AFEPITNDKGVGTIEQQVNGLNIKDMKNLVDEYKNKFEKLIIILTSETEEGN-FVVVGVS 859

Query: 844 EDLLDRFNAVDLAR--LSAKVLGGGGGGGRPHMAQS 877
           E + + ++A+++ +    +       GGG   +AQ 
Sbjct: 860 EKIQNEYSAIEIFKNLTISP-----KGGGNSSLAQG 890


>gi|261749137|ref|YP_003256822.1| alanyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497229|gb|ACX83679.1| alanyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 887

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 301/925 (32%), Positives = 468/925 (50%), Gaps = 82/925 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR TFL+FFQ   H+++PS  +   +DPTL F N+GM PFK  F G +KP Y  +  VQK
Sbjct: 6   IRDTFLDFFQNKKHKIIPSFPIYLKDDPTLFFINAGMNPFKEYFLGHKKPEYTRIVNVQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+NVG  N HHT FEMLGN+SFG Y ++  I+ AW+LLTK +++ ++ LY
Sbjct: 66  CLRVSGKHNDLENVGHDNYHHTMFEMLGNWSFGDYSRKETIEWAWELLTKVYNIPEKNLY 125

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           I+++  DE        E F+ WK    ++ + ++     +NFW M   GPCGPCSEI  D
Sbjct: 126 ISIFIGDEKEGLSMDKETFQHWKTF--INKENLVFFGKEENFWEMGSIGPCGPCSEIHID 183

Query: 179 QG----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
                 +    G    +++  + IEIWNLVF++F +++      L    +DTGMGLER+ 
Sbjct: 184 LRNKEEKEKIPGKYLINKKNPKVIEIWNLVFIEFYRRSDGILEKLSTKHVDTGMGLERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
            VLQ K ++YD D+F  +I+  ++      K E N  ++ R++ DHLR+  F I DG LP
Sbjct: 244 MVLQGKFSSYDTDIFFPIIRDIKESLGGIYKEEFNQDISIRIVADHLRALVFSIFDGQLP 303

Query: 293 ANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           +N G GYV+RR++RRA+ Y  R L   EP +   + +L   M +++PEL + K  I+  +
Sbjct: 304 SNNGAGYVIRRLLRRAVIYVTRFLYQKEPFIYKFVDSLVRRMKNSFPELEKKKDYIQNVI 363

Query: 352 RSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+  F + L++G   +  ++  +     ++L+G   F+LYDT+G PL + +       
Sbjct: 364 KEEESSFFQVLEKGYERIQHIILKAKERNQKVLDGKSLFQLYDTYGFPLKLSKIFAEENN 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ---FIGYDLLRGS 466
           L  ID  SF + L +Q    +  S    +   +  W  +      ++   FIGYD L   
Sbjct: 424 LY-IDEKSFEKRLLKQ----KEKSHKKKNIIIKNDWIKIHSNQFFSEKNNFIGYDFLECH 478

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             + + RK+                           ++       E+VF +TPFY E GG
Sbjct: 479 ILIIQYRKIE--------------------------DKIKENHYYELVFSKTPFYPEGGG 512

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           QLGDTG    D  ++ I   +K+   I      V +  +         ++   R+++  N
Sbjct: 513 QLGDTGFIKNDLEKIFIEKTKKENSIIIHI---VRKLPVNIYSRFQAIVNKNRRKKIEKN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H++THLLH +L  ILG H+ Q GS +  D LRFD +H K IT  EL  IE+ V  +I  N
Sbjct: 570 HTSTHLLHFSLKKILGEHIQQKGSYVGEDYLRFDFSHPKKITIEELFQIEEMVQKLIFSN 629

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           LP+   R +  ++AI  G   +   KY   VR ++         SS LC GTH  +TG I
Sbjct: 630 LPLEERRSIPLQEAIKKGYNGIFYEKYEKEVRGITFGD------SSELCIGTHAKNTGCI 683

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            +  IVSE S+  GIRRI+A T ++A  +L     + KSL   L  +  + +  +  + E
Sbjct: 684 QVFSIVSELSVSYGIRRIKAFTSEKAIQYLKSIHFQEKSLRKILN-NTESTIKSIFSLQE 742

Query: 766 EYR-----------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
           + +           +   I  K  L   ++  S   I D++F      + D    K ++ 
Sbjct: 743 QNKKLKKKLEKLQFQQIKIFKKEYLLKAIQLPSITYICDISF---EEKDFDLNLFKKIIL 799

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRP 872
            L+  I S + M+VG  K+KK  + I +++ ++     +A  + R  +  + G    G+ 
Sbjct: 800 DLRNVI-SNLFMVVGFIKDKKPIIFISISDHIIKNKNIHANQIIRKMSDYIHGKSW-GKS 857

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
             A + G N N     +     +LK
Sbjct: 858 FFATAIGSNQNGLSLVLKTTKEYLK 882


>gi|299115131|emb|CBN75498.1| Alanyl-tRNA Synthetase [Ectocarpus siliculosus]
          Length = 1122

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 298/984 (30%), Positives = 440/984 (44%), Gaps = 105/984 (10%)

Query: 3    NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
            +V+ +R TF++ F+    H   PSS ++P NDP+L+F N+GM  FK +F GQ  P     
Sbjct: 153  SVTKVRQTFIDHFKSKREHTFYPSSPVVPVNDPSLLFANAGMNQFKPVFLGQTDPSSPLA 212

Query: 60   ---AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
                    QKC+RAGGKHNDLD+VGR   HHTFFEMLG +SFG YFKE A++  ++ L +
Sbjct: 213  GLKRAVNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGTWSFGDYFKEEAVEWGFEALNE 272

Query: 117  EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
             F L   RLY T +  DE        E   LW K+  L  D+++     DNFW M + GP
Sbjct: 273  VFGLPADRLYATYFGGDEELGLAPDLETRDLWLKV--LPEDRVMPGDRKDNFWEMGDVGP 330

Query: 169  CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            CGPCSE+ FD+           + +    IEIWNLVFMQF +       +LP   +DTG+
Sbjct: 331  CGPCSELHFDRI-GGRNAASLVNMDDPDVIEIWNLVFMQFNRDEAGNLKLLPAKHVDTGL 389

Query: 229  GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHL 279
            GLER+ ++LQ+K +NYD D+F  L  A + VTG                   +RV+ DH 
Sbjct: 390  GLERLVSILQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVGLKDTAYRVVADHA 449

Query: 280  RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338
            R+ SF I DG +PAN+GRGYVLRRI+RRA+ Y +  L         ++P +  E G  YP
Sbjct: 450  RALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYP 509

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGL 396
            EL + +  + E ++ E+E F   L+RG+     V           + GD AF LYD+ G 
Sbjct: 510  ELREKEAFVMEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSNTIPGDTAFFLYDSMGF 569

Query: 397  PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            PLD+ Q +    G+  +D   F   +  Q++R++       +        +L        
Sbjct: 570  PLDLTQVMAEEVGMT-VDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGAD----- 623

Query: 457  FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-----------QGEIVEEA 505
                     S+  +E  K    +     +    + V A+              G     +
Sbjct: 624  -------ETSRLAEEGVKPTDDEAKYTWSTTTGNKVVALFDGETLSTTASQSGGTAAASS 676

Query: 506  VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF------VHHAI 559
                 V ++ D TPFY+EAGGQ+ D+G  +         D   +   +       +H   
Sbjct: 677  DDATTVGILLDSTPFYSEAGGQVSDSGKLVVSAGGEDGDDGVIEVADVRMFGGFALHVGR 736

Query: 560  VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +  G L    S+   +DY  RR+++ NH+ TH L++AL   +   V Q GS +T + LRF
Sbjct: 737  LVSGSLSVGDSVRCEVDYDRRRKVAPNHTMTHALNYALRKAVDEGVDQKGSLVTDEKLRF 796

Query: 620  DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRV 678
            D +H K +T  +L+  E  V  II +   V  +++   +A +  G  A+ G  Y D VRV
Sbjct: 797  DFSHGKALTGPQLEESEAIVQRIIQEEKEVYNQVLPLSEAKSIFGLRAVFGEVYPDPVRV 856

Query: 679  VSVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            VSV +            +    S   CGGTHV +T E     I  E+++  G+RRI AIT
Sbjct: 857  VSVGFPVEDMAKDPSREEWATSSVEFCGGTHVGNTREAEAFVITEETAVAKGVRRITAIT 916

Query: 728  GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-------------WEEYRKLQLIH 774
            G  A+  +   +           +  G + G V                    R      
Sbjct: 917  GSAAKEAVAAGEVLKLRAEEVSSLKGGELEGAVASFRRDVDGATLSAGVKGRLRAQGDKL 976

Query: 775  AKRKLQLNVEDLSCHKIADVN----------------FMSHIISEVDSKELKSVMDALQK 818
             KR    +    +    + V+                 +  +    DSK +K V+D + K
Sbjct: 977  LKRVAAESKAAAAAAAQSGVDAAVKAAKQAVEEGKTWVVMDVAIGADSKAVKRVLDGVSK 1036

Query: 819  KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV----DLARLSAKVLGGGGGGGRPHM 874
                   M            L+V +              +  R S    GG G GGRP  
Sbjct: 1037 VAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRSSLAACGGRG-GGRPTS 1095

Query: 875  AQSGGPNGNKADQAIAGVASFLKK 898
            AQ   P+  + D+ +A   +FL +
Sbjct: 1096 AQGQAPDAGEMDKGMAAAIAFLDE 1119


>gi|325068847|ref|ZP_08127520.1| alanyl-tRNA synthetase [Actinomyces oris K20]
          Length = 782

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 284/804 (35%), Positives = 431/804 (53%), Gaps = 64/804 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L++F  N HE+ PS SL+    P+++FT +GMVPF     G E+  +   
Sbjct: 1   MRTSEIRSRWLDYFAANEHEIRPSVSLVSPE-PSILFTVAGMVPFIPYILGTEEAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVG T RH TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+++ED+ +   W +  G+ A++I  +   D  WS  + GP G C EI 
Sbjct: 116 GYGLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230
           +D+G    P G P    +G+R++EIWNLVF +F +   +         L + +IDTG GL
Sbjct: 176 YDRGPAYGPDGGPAVDIQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHL 279
           ER+A ++Q+K N Y+ID    +I+A+E+++G  Y             ++ V  RV+ DH+
Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIKAAEELSGKVYGRGSAGPEAGEAYHDDVRMRVVADHV 295

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS+  LI+DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL      M S+YPE
Sbjct: 296 RSALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKSSYPE 355

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK------DEILNGDVAFKLYDT 393
           L      I E    E++ F +TL  G  +LD  ++   K        +++G  AF+L+DT
Sbjct: 356 LETGWSTISEVAYGEEDAFRRTLAAGTTILDTAVASAKKEAGSSGRPLVSGKSAFELHDT 415

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-- 451
           +G P+D+  ++   +G   +D  +F   + EQ+ RARA +    +G  +   F   EK  
Sbjct: 416 YGFPIDLTLEMAAEQG-VDVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEM 474

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            G + F+GY                         +   + V  I+  G       +  +V
Sbjct: 475 GGGSTFLGYTE-----------------------SSADATVTGILVDGVPQSVVTAPAEV 511

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           EVV D+TPF+AE GGQL D G   + DG  +++ DVQ   +G+ VH   +  G +     
Sbjct: 512 EVVLDRTPFWAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVHRGTLTEGTIAVGEK 571

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
               ID   R  ++  H++TH++H AL  I+  + +Q GS  +P  +RFD  H   + S 
Sbjct: 572 AFAQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALASD 631

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           ++  IE+ VN  ++++L V   IM+ + A A+GA AL G KY   VRVVS+    GG  S
Sbjct: 632 QISGIEERVNARLSEDLAVTDEIMDIDAARAAGAMALFGEKYGKEVRVVSI----GGDWS 687

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LC GTHV STG I  + ++ ESSI +G+RRI+A+ G+ A  +   +   +  L++ + 
Sbjct: 688 KELCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGAYGYQAKEHALVSQLSTMVG 747

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIH 774
               ++  RVE +    +  +   
Sbjct: 748 GRPEDLPERVESLMARLKDAEKRL 771


>gi|325120127|emb|CBZ55681.1| hypothetical protein NCLIV_061050 [Neospora caninum Liverpool]
          Length = 1034

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 292/971 (30%), Positives = 438/971 (45%), Gaps = 120/971 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
           +  ++R+ +++FF+ +GH + PSS +IP  D TL+F N+GM  FK IF GQ         
Sbjct: 25  SGEAVRSAYVDFFEVHGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQVDRNSPLSK 84

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
              VT  QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK  AI  AW LLT+ 
Sbjct: 85  LRRVTDTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKRDAIAWAWQLLTEV 144

Query: 118 FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           + + + RLY + +           D EA  LW +   L  ++++     +NFW MA+TGP
Sbjct: 145 YKIPKDRLYASYFGGDPRLPTCPPDNEARDLWLQY--LPPNRVLPFGAKENFWEMADTGP 202

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWNLVFMQ+ ++       LP   +DTGM
Sbjct: 203 CGPCSEIHYDRIGGRDASS-LVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG----------MKYEGNNIVNHRVIVDH 278
           GLER+A+VLQ+K +NYD DLF  L     ++T            + +    + +RV+ DH
Sbjct: 262 GLERVASVLQDKQSNYDTDLFIALFDKIAELTPGLRPYEGKIGEEDKDLIDMAYRVLADH 321

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337
            R  +  IADG  P+NEGRGYVLRRI+RRA+ YAR  LG  E     L+  + + +GS +
Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMKEGAFPQLVSVVVSLLGSTF 381

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395
           PE+ + +  +   L  E+++F +TLD G+     V + L     ++  G  AF LY T+G
Sbjct: 382 PEMKKNEEKVIRILHKEEQQFSRTLDNGVERFKKVANSLKAKGVKVFPGSEAFTLYSTYG 441

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGA 454
            PLD+ Q +    GL  +D   F +  +  R  +        G+G    +          
Sbjct: 442 FPLDLTQLMAEEVGL-QVDAEEFERKFDAHRVASENTSFKQGGAGAVYALPPDQHHLLAK 500

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ------QGEIVEEAVSG 508
            + +                             V + V AI            V    S 
Sbjct: 501 NRNLAPTDDSAKYQWNVKDLAALVAQDAVEAAPVKAKVAAIWDGKRFAPDAAAVASPTSE 560

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
             V V+ D+T FYAE GGQ+GD G    +  G   ++ D QK  +   +H   V +G L+
Sbjct: 561 NFVAVILDKTCFYAEQGGQVGDVGRLVDLSSGAEFEVIDSQKSGDY-VLHIGTVSKGTLK 619

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-------------------------- 600
               LV  +DY  R +L+ +H+ THLL+ AL  +                          
Sbjct: 620 EGSELVPLVDYVRRFKLAQHHTGTHLLNFALREVLVRKMRKNAEGGDKREDTNGLHIRES 679

Query: 601 --------LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
                       + Q GS +    LRFD    KP+ + ++ ++E+ V D IA+  PV  R
Sbjct: 680 CLNERELSDEEDIQQKGSLVEEKRLRFDYAGEKPMENEDILAVENVVKDCIARERPVHYR 739

Query: 653 IMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGG-------------VHSSALCGGTH 698
            +  E A+   G  A+ G  Y D VRVVSV                     S  LCGGTH
Sbjct: 740 EIALEQAMKIPGLRAVFGEVYPDPVRVVSVGSPIEDLVELAVSGKGETPFASIELCGGTH 799

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVS 752
           + +  +I    I+SE S+  G+RR+ A+TG  A       +E  K+ AS       L   
Sbjct: 800 LHNAAQIQDFCIISEESVAKGVRRVVAVTGDPALEARKELEELEKAFASLAAAPRELPAL 859

Query: 753 QGNVVGR------------------VEEIWEEYRK-LQLIHAKRKLQLNVEDLSCHKIAD 793
           +  V+                    V+++ +  +  L+L  A+ K  L        ++ +
Sbjct: 860 EKEVLKARGLLDSAGPLPLVGKRVLVKQLEQAQKSLLELQKARSKELLKEAKRLGEEVGN 919

Query: 794 ----VNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                 F+   + ++  D K L +    L +       +LV  +     + +  V     
Sbjct: 920 EHKTKPFLVLNLPQLHGDGKALDTASQTLHQTAPELPFLLVTANPATGTAAIAFVPASCG 979

Query: 848 DRFNAVDLARL 858
               A      
Sbjct: 980 KNAVAAPWLNA 990


>gi|330752142|emb|CBL87102.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 834

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 290/883 (32%), Positives = 451/883 (51%), Gaps = 75/883 (8%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MF N+GM PFK+IF G +K     V   QKC+R  GKHNDL+ VG    HHT FEMLGN+
Sbjct: 1   MFVNAGMNPFKDIFIGSKKSENGRVANTQKCLRVSGKHNDLEEVGHDTYHHTLFEMLGNW 60

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSA 148
           SFG YFKE AI  AW+LLT+ + LD+ R+YITV++         D ++ K W K   + +
Sbjct: 61  SFGDYFKEEAIDWAWELLTEVYGLDENRIYITVFEGDLSDGLKRDIDSEKAWLK--HVQS 118

Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC----IPGGLPGSSEEGERYIEIWNLV 204
            +I+  +  DNFW M E GPCGPCSEI FD           G    +E+  + IE+WNLV
Sbjct: 119 SRILSGSKKDNFWEMGEVGPCGPCSEIHFDLRNEAERKKIDGALLVNEDHPQVIELWNLV 178

Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
           F++F++ +      LP   +DTGMGLER+   +  K +NYD D+F   I     ++  +Y
Sbjct: 179 FIEFQRVSDGNLSPLPDKHVDTGMGLERLVRAIGMKESNYDTDIFTPYINKLSDLSNKEY 238

Query: 265 EGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPL 321
             +    ++ RVI DH+R+ S  IADG LP+N G GYV+RRI+RRA+ Y    LG+ +P 
Sbjct: 239 GTDETVDISFRVISDHIRAVSMAIADGQLPSNIGAGYVIRRILRRAVRYGYSNLGFRKPF 298

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
           ++ LLP L + +   +PEL     ++   +R E+  F +TL+ GL  LD  +S   K+ I
Sbjct: 299 LIDLLPVLSSSLSKTFPELEIQISMVTAVIREEELSFLRTLESGLKRLDDAISE-SKNAI 357

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           ++G  AF+LYDT+G PLD+ + I   +    +D   F+  ++ Q+ R+R+      S   
Sbjct: 358 ISGIRAFELYDTYGFPLDLTKLICSEK-RYNVDEDQFHLEMKNQKDRSRSA-----SSKK 411

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              W  +    G  +FIG++       +   R +                          
Sbjct: 412 VGDWIEMSSGRGD-EFIGFEANSSKSKLIRYRHI-------------------------- 444

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
             E+  G+ ++V+   TPFY E GGQ+GD G    +G  + + +  K+   I  H     
Sbjct: 445 --ESSKGKSIQVLIAPTPFYPEGGGQVGDIGIIKFEGQEINVKETTKETGMIIHHL---Y 499

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                   ++   ++ +NR ++S NHSATHL+H+AL  ILGSHV Q GS +  +G RFD 
Sbjct: 500 DEPKVWSKNVFAQVNMKNRERVSENHSATHLVHYALRKILGSHVEQRGSLVHAEGFRFDF 559

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVS 680
           +H + +++A++ SIE  V  +I   +       +    A   GA AL G KY D VRVV 
Sbjct: 560 SHFQKVSNAQINSIESLVRSLITDKIKTQIHNEIPINSAKKMGAMALFGEKYGDFVRVVQ 619

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                    S  LCGGTHV  T  I+   I SES + AGIRRIEA++G  A  +L+ + +
Sbjct: 620 FGE------SVELCGGTHVEDTSNILTFIIKSESGVAAGIRRIEALSGAAAIDYLLDKSK 673

Query: 741 KLK-SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--- 796
           +   +L    +V       +++ +  +   ++        Q+ V +L    I        
Sbjct: 674 RYDLALKESNQVDPEE---KIKSLKVQVLGIEKKLISFN-QMRVSNLKSELIKSSKDYGT 729

Query: 797 --MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +   I +++S  +K ++  ++    + +++L+ +  + +  + + V  D     NA +
Sbjct: 730 LKVVAEIIDLESSYVKDLVFLIKDNYPTAVVLLLSVIGD-RVQMHLGVGSDSTPHVNAGN 788

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             +  +  + GG GGG+P  A SGG   +  +  I      ++
Sbjct: 789 WVKELSLFIKGG-GGGQPSYASSGGKFPDGVNDLIDEFYKKIE 830


>gi|289444091|ref|ZP_06433835.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Mycobacterium
           tuberculosis T46]
 gi|289417010|gb|EFD14250.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Mycobacterium
           tuberculosis T46]
          Length = 877

 Score =  615 bits (1586), Expect = e-173,   Method: Composition-based stats.
 Identities = 299/886 (33%), Positives = 446/886 (50%), Gaps = 81/886 (9%)

Query: 53  QEKPVYQAVTTVQKC-----VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAI 107
           +  P Y   T++Q        R G         G T RH+TFF+M GNFSFG YFK  AI
Sbjct: 24  KSTPPYPTATSIQPVHPYPRYRRG---------GITTRHNTFFQMAGNFSFGDYFKRGAI 74

Query: 108 QLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS 162
           +LAW LLT       + LD  R++ TVY +D+EA +LW++++GL A++I R    DN+WS
Sbjct: 75  ELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWS 134

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----- 217
           M   GPCGP SEI++D+G            E  RY+E+WNLVFMQ E+     +      
Sbjct: 135 MGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTTKEDYQIL 193

Query: 218 -ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHR 273
             LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V    Y      + V +R
Sbjct: 194 GPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYR 253

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM 333
           +I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   M
Sbjct: 254 IIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAM 313

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLY 391
           G +YPEL+     I     +E+  F +TL  G  L + V S        +L+G  AF L+
Sbjct: 314 GPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLH 373

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G P+++  ++    GL  +D I F + + EQR RA+A +        +   +     
Sbjct: 374 DTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVD 432

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE------- 504
            GAT+F G+D LR                         + +  I   G+ V         
Sbjct: 433 AGATEFTGFDELRS-----------------------QARILGIFVDGKRVPVVAHGVAG 469

Query: 505 -AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAI 559
            A  GQ+VE+V D+TP YAE+GGQ+ D G   G    +  R  +TDVQK A+ ++VH   
Sbjct: 470 GAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVN 529

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           VE G      +++  +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRF
Sbjct: 530 VESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRF 589

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D     P+T  +   +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV
Sbjct: 590 DFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV 649

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +    GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  + 
Sbjct: 650 EM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKER 705

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADV 794
             +  LAS LKV    V  RV  + E  R  +    + ++               +I +V
Sbjct: 706 ALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNV 765

Query: 795 NFMSHIIS-EVDSKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RF 850
             ++  +S  + + +L+S++  ++ K+ S   ++ L+   + +     +       D   
Sbjct: 766 RLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGI 825

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            A DL +  A  +  G GGG+  +AQ  G N    D A+  V S +
Sbjct: 826 RANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 870


>gi|255084804|ref|XP_002504833.1| alanyl-tRNA synthetase [Micromonas sp. RCC299]
 gi|226520102|gb|ACO66091.1| alanyl-tRNA synthetase [Micromonas sp. RCC299]
          Length = 945

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 258/755 (34%), Positives = 391/755 (51%), Gaps = 60/755 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61
           IR TFL+FF+   H ++PSS ++P +DPTL+F N+GM  FK  F G   P          
Sbjct: 12  IRQTFLDFFEGKEHTVVPSSPVVPHDDPTLLFANAGMNQFKPCFLGTADPKGPLAKLKRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG +FKE AI  AW+LLTK + L 
Sbjct: 72  TDTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDFFKEEAIGWAWELLTKVYMLP 131

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY T +          D+EA ++W K   L   K++     DNFW M + GPCGPC+
Sbjct: 132 EDRLYATYFGGDPAQGLPPDDEAKEIWLKY--LPPHKVLPFDCKDNFWEMGDVGPCGPCT 189

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           + +    +EIWN+VF+QF ++       LP   +DTGMG ER+
Sbjct: 190 EIHYDRI-GGRDASDLVNMDDPNCLEIWNVVFIQFNREEGGVLKPLPAKHVDTGMGFERL 248

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSF 284
           A++LQ K +NYD D+F  +  A + VTG +               + +RV+ DH+R+ +F
Sbjct: 249 ASILQGKMSNYDTDVFMPIFDAIQAVTGAEPYAGKLGAEDVGEKDMAYRVVADHVRTLTF 308

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            IADG  P ++GR YVLRR++RRA+ + R  LG  +     L+  +    G  +PE+++ 
Sbjct: 309 AIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFATLVKTVVQLFGDVFPEIVKE 368

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIM 401
           +  + E +  E+E FG+TL +G+     + +   +   + ++G  AF L+++ G P+D++
Sbjct: 369 EKRVTEIIAEEEESFGRTLLKGVEQFKKIAAKAKEEGRDTVSGAEAFLLWESFGFPVDLV 428

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           + +    G+  +D   F +A +E + ++RA     G          L  +  AT      
Sbjct: 429 EIMCEENGMK-VDNAGFEEAFKEAQEKSRAAGKKGGG-------RQLLFEAEAT------ 474

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPF 520
               +        +          +   + VKAI+     VE   + +  + +V D+T F
Sbjct: 475 ----AWLANNGVPLTDDSHKYAAGSVPEATVKAILTLDGFVESTENVEGPIGLVLDKTSF 530

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+ D G          + D +  A    +H      G +    ++   +DY  R
Sbjct: 531 YAESGGQVCDVGVIKSGSASATVEDTKVAAGF-VLHSCDSVDGAVAVGDAVRCLVDYDRR 589

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
             +  NH+ TH L++AL  +LG  V Q GS +  + LRFD +HSK +T  E++ +E  V 
Sbjct: 590 ANIMPNHTMTHCLNYALRRVLGDSVDQKGSLVDDEKLRFDFSHSKAMTPDEIEKVEALVR 649

Query: 641 DIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY-----------EDGGV 688
           D +   L V TR +    A   SG  A+ G  Y D VRVVSV             ED   
Sbjct: 650 DQVNAKLAVHTREVALAKAKEISGLRAVFGEVYPDPVRVVSVGPSIDDLLGAPASEDWKG 709

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +S   CGGTH+++T +     ++SE  I  G+RRI
Sbjct: 710 YSIEFCGGTHLANTSDAADFVLLSEEGIAKGVRRI 744


>gi|239980567|ref|ZP_04703091.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291452426|ref|ZP_06591816.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291355375|gb|EFE82277.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 740

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 288/774 (37%), Positives = 421/774 (54%), Gaps = 51/774 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR+ FL+ F   GH  +PS+ L P  DPTL+F N+GMVPFK   TG+    +   
Sbjct: 1   MRTADIRSRFLDHFTARGHTPVPSAPL-PTPDPTLLFVNAGMVPFKPYLTGEVPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VGRT RH +FF+M GNFSFG YFKE AI LAW+L T      
Sbjct: 60  TSVQKCVRTL----DIEEVGRTTRHGSFFQMAGNFSFGDYFKEEAIALAWELSTTPVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R+++TV+  D EA  LW++ +GL   +I+     DNFWSM   GPCGP SE++
Sbjct: 116 GYGLDPARIWVTVHHTDTEARALWRRTAGLPDARIVDRGDEDNFWSMGVPGPCGPSSELY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G + + +R++E WNLVFMQ E+     +        LP  +IDTG+GL
Sbjct: 176 YDRGPAF-GPEGGPAVDEDRFMEFWNLVFMQDERGEGHGKSGYPILGELPHRNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ERMAT+LQ+K N Y+ID  + ++ A+ ++TG +Y  +    V  RV+ DH+R++  L+AD
Sbjct: 235 ERMATLLQDKPNLYEIDETRPVLDAAAELTGTRYGSDAAADVRLRVVADHVRTALMLLAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RRA+   R LGY +P +  LLP     M   YPE+ ++   I 
Sbjct: 295 GVSPTNEGRGYVLRRMLRRAVRSVRQLGYPDPALPALLPVARDLMACGYPEVAESFPRIA 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E   +E+E F  TL +G  +LD  ++ +  +    L G  AF+L+DT+G P+D+  ++  
Sbjct: 355 EQAYAEEEAFRATLQQGTTVLDTAVAKVRAEGGTALPGAQAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLR 464
            +G   +D   F   +E+QR RARA +    SG T       ++ +  G T+++ ++ L 
Sbjct: 415 EQG-VEVDRAGFTALMEDQRERARADARARKSGGTGDTSALRAVLDASGPTEWLAWEKL- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V+A++     +  A +GQ   VV D+TPFYAE+
Sbjct: 473 ----------------------TTRATVRAVLGAEGPLPVATAGQLATVVLDRTPFYAES 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ  D G   G  +  ++ DVQ+   G+ VH   V  G L     +  T+D + R    
Sbjct: 511 GGQAADAGHLTGASVEAEVVDVQRPLPGLVVHRVRVLAGELAPGDEVEATVDPEWRLGAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS TH+LH AL  +LG    Q+GS   P  LR D      +T A    +E+  N  + 
Sbjct: 571 QAHSGTHVLHAALRQVLGPAALQSGSYNRPGHLRLDFPWRGALTPAARSEVEEAANQALR 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++LPV  R M   +A   GA AL    Y + VRVV +    GG  S  LCGGTHV+ T +
Sbjct: 631 RDLPVGVRWMPLAEARELGALALFDETYGEEVRVVEI----GGPWSRELCGGTHVAHTSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           I ++ +  E+S+ AG+RR+EA  G     +L  + +    LA  L   +  +  
Sbjct: 687 IGVIALTGEASVGAGMRRLEAAVGIEGFGYLARERDLAAQLAQQLGAPRAELPE 740


>gi|222612529|gb|EEE50661.1| hypothetical protein OsJ_30891 [Oryza sativa Japonica Group]
          Length = 901

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 288/922 (31%), Positives = 428/922 (46%), Gaps = 96/922 (10%)

Query: 43  MVPFKNIFTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P             QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTAAPDAPLGRLRRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFKE AI  AW+LLT+ + L   R+Y T +  DE        E+  +W K   L  +
Sbjct: 61  FGDYFKEEAIGFAWELLTQVYKLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKE 118

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209
           K++     DNFW M +TGPCGPC+EI FD+           + +    IEIWNLVF+QF 
Sbjct: 119 KVLPFGCKDNFWEMGDTGPCGPCTEIHFDRVGNRD-AASLVNNDDPTCIEIWNLVFIQFN 177

Query: 210 QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM------- 262
           ++       LP   +DTGMG ER+ ++LQ K +NYD D+F  +  A  Q+ G        
Sbjct: 178 READCTLRPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSG 237

Query: 263 ----KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGY 317
               +      + +RV+ DH+R+ SF IADG  P NEGR YVLRRI+RRA+ +    L  
Sbjct: 238 KVGPEDVDKVDMAYRVVADHIRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKA 297

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            +     L+      MG  +PEL   +  I++ ++ E+E F  TL +G          + 
Sbjct: 298 KQGFFSSLVHVFVQLMGDVFPELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVK 357

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
           +     G  AF L+DT+G P+D+ + +    GL+ +D   F+ A+EE R +AR      G
Sbjct: 358 ES---GGTDAFVLWDTYGYPVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAG 413

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
                    S+     AT             ++          P        S+VKAI  
Sbjct: 414 EN-------SIVLDANAT-----------AQLRNQGLASTDDSPKYGYKDNDSVVKAIYT 455

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             E V  A   +   +V + T FYAE GGQ+ DTG   G      +T+VQ  A    +H 
Sbjct: 456 GSEYVSAASGDEDFGLVLESTSFYAEQGGQIYDTGKIEGSFGSFNVTNVQVFAGY-VLHM 514

Query: 558 AIVERGIL--RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
               +G         +   +DY  R  ++ NH+ TH+L+ AL  ILG HV Q GS + P+
Sbjct: 515 GSFTKGSKALSVGDKVACKVDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPE 574

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND 674
            LRFD +H KP+   +L+ IE  VN  I   L V  R +   DA   +G  A+ G  Y D
Sbjct: 575 KLRFDFSHGKPVQPEDLRKIESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPD 634

Query: 675 RVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            VRVVSV             ++    S+ LCGGTH+ +T E     ++SE  I  G+RRI
Sbjct: 635 PVRVVSVGRKVEDLLANPESKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRI 694

Query: 724 EAITGQRARSHLMGQ------------------DEKLKSLASFLK------VSQGNVVGR 759
            A+T + A   +                     ++ + S+ S L         + ++ GR
Sbjct: 695 TAVTAKHASDAIKDASSIDSEINEASKLEGAILEKTIASIKSKLDTALIPAARKADLKGR 754

Query: 760 VEEIWEEYRKLQL----IHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMD 814
           V ++ +E RK +      + ++ ++  ++           F    +   +D+  ++  + 
Sbjct: 755 VSKLEDELRKAKKKMGEENIQKAVKFAIDAAQTALSEGKRFCVAHVDVGLDTSAIREAVI 814

Query: 815 ALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
            ++ + +   IML    +   KA +   V     +    +D    S   L G GGGG+  
Sbjct: 815 KVKDQ-KDLPIMLFSTDEATNKAVIYAGVPPSAANSLKVLDWLTPSIAPLKGKGGGGKNG 873

Query: 874 MAQSGGPNGNKADQAIAGVASF 895
           +AQ  G   ++  +A+      
Sbjct: 874 IAQGQGTEASQLKEAMEVATQI 895


>gi|258575517|ref|XP_002541940.1| alanyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237902206|gb|EEP76607.1| alanyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 931

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 271/950 (28%), Positives = 438/950 (46%), Gaps = 137/950 (14%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAVTTVQKCVRAGGKHNDL 77
           +PSSS++P +DPTL+F N+GM  +K+IF G   P       +     QKC+RAGGKHNDL
Sbjct: 42  VPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAHLKRAHNSQKCIRAGGKHNDL 101

Query: 78  DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE----- 132
           D+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +WDLLTK + L+  RLY+T ++      
Sbjct: 102 DDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQYSWDLLTKVYGLEPDRLYVTYFEGNKDAG 161

Query: 133 ---DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
              D E   LW    G+  D I+     DNFW M + GPCGPCSE+ +D+          
Sbjct: 162 IEPDLETKDLWLG-VGVKEDHILSGNMKDNFWEMGDQGPCGPCSEVHYDRI-GGRNAAHL 219

Query: 190 SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLF 249
            + +    +EIWN VF+Q+ +++++    LP   +DTG+G ER+ +VLQ+K++NYD D+F
Sbjct: 220 VNMDDPNVLEIWNNVFIQYNRESEKILRPLPNKHVDTGLGYERLVSVLQDKSSNYDTDVF 279

Query: 250 KHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
             L     ++TG++                 +RV+ DH+R+ +F I+DG  P NEGRGYV
Sbjct: 280 SPLFDVIREITGVRPYAGKFGEEDVDGIDTAYRVVADHVRTLTFAISDGAAPNNEGRGYV 339

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
                                         T+MG  +PE+ + +  + E L  E+  F K
Sbjct: 340 W-----------------------------TQMGDMFPEIKKKQTDVMEILDEEEISFAK 370

Query: 361 TLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLDRG    +     +       L+G   ++LYDT G P+D+ Q +   RGL+  +    
Sbjct: 371 TLDRGERQFEIYAQQAKESGSGKLHGADVWRLYDTFGFPVDLTQLMAEERGLSIDNTEFE 430

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
                  R +A+  S G     ++ +  ++ +                  +++D      
Sbjct: 431 EA-----RLKAKEASKGQAKAASDLLKLTVHDLG---------------KLEKDNVPKTD 470

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                    + S + +I    E V       +G+++ ++ D+T FYAE GGQ  D G  I
Sbjct: 471 DSAKFGRGNIQSQILSIYHGKEFVASTNGISAGEQIGIILDKTNFYAEQGGQEYDIGKII 530

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIV-ERGILRTEMSLVLTIDYQN--RRQLSINHSATHL 592
            DG R             FV +A    +    T+  L   +      R ++S NH+ TH+
Sbjct: 531 VDGHRGVTFQFGVPFLRPFVFYAKQARQLPQATDGKLQERLLLTRPQRHEVSNNHTGTHI 590

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L+ AL  +LG+ + Q GS +  + LRFD +H   I+ ++L+ IE    + I QN  V ++
Sbjct: 591 LNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEAKSTEYIRQNCAVYSQ 650

Query: 653 -IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSALCGGTHVS 700
            +   +    +G  A+ G  Y D VRVVSV                   S   CGGTHV 
Sbjct: 651 DVPLAKAREITGVRAVFGETYPDPVRVVSVGVELDEILKDVKDPRWKGVSIEFCGGTHVQ 710

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---------------------GQD 739
            TG+I  L I+ ES I  GIRRI A+TG+ A                           Q+
Sbjct: 711 KTGDIKDLVILEESGIAKGIRRIIAVTGKDAHEVQRIAREFGERLNKFEKMEQGPQKEQE 770

Query: 740 EKLKS-------LASFLKVSQGNVVGRV-EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            KL         +++  K    +   R+ +++ +  + LQ    K  L          + 
Sbjct: 771 AKLVQVDLNQLSISAVEKARFRDQFARIHKQVLDAQKALQKQEIKAALDTINSHFEKPEN 830

Query: 792 ADVNFMSHII-SEVDSKELKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLD- 848
            D +F+   + +  ++K +   ++ ++ K++   + +    + + + +    V+  L   
Sbjct: 831 KDTSFLVVRLPTSANAKAISESINHVKSKLKDKSLYVFAADEQQGRVAHGCYVSSSLSAQ 890

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             +A   + + + ++GG             G +  K D+A+     +L++
Sbjct: 891 GASASSWSGVVSAIVGG------------NGTDVGKVDEALDAATKYLEQ 928


>gi|46203377|ref|ZP_00051608.2| COG0013: Alanyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 473

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 275/463 (59%), Positives = 338/463 (73%), Gaps = 2/463 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWRLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TVY +D+EA  LWKKI+G   DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 TPERLLVTVYADDDEAAGLWKKIAGFGDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG P    E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNPLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A               ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPTLETRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+PAL  EMG A+PEL++++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPALVREMGQAFPELVRSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG  G+D  +F+
Sbjct: 361 KTLERGLAILDTESRDLSAGQNLSGETAFTLYDTYGFPLDLTQDALKARG-IGVDTAAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            A++ Q+  ARA   G G   TE +WF +KE+ GAT+F+GY+ 
Sbjct: 420 AAMQRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYET 462


>gi|219125523|ref|XP_002183027.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405302|gb|EEC45245.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 959

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 292/920 (31%), Positives = 449/920 (48%), Gaps = 94/920 (10%)

Query: 3   NVSSIRTTFLEFFQK--NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
               +R+TF++FF++    H    SS+  P NDPTL+FTN+GM  FK +F GQ  P    
Sbjct: 9   TTDKVRSTFIDFFEQEPRSHTFQRSSACAPLNDPTLLFTNAGMNQFKPVFLGQVDPNSPL 68

Query: 60  ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                    QKC+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AI  AW LLT
Sbjct: 69  ANVQRAVNSQKCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIDYAWQLLT 128

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + LD  RLY T +  D+        EA  LW +   L A ++I     DNFW M E G
Sbjct: 129 EVYRLDPDRLYATYFQGDDALGLAPDFEARDLWLRY--LPAARVIGCDVRDNFWEMGEVG 186

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSEI +D+           + +  + IEIWN+VF+Q+ ++  +    LP   IDTG
Sbjct: 187 PCGPCSEIHYDRIGNRDAAA-FVNADDPQVIEIWNIVFIQYNREPDK-LQTLPAKHIDTG 244

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDH 278
           MGLER+ ++LQ K +NYDID+F+ L       T                    +R I DH
Sbjct: 245 MGLERLVSILQNKDSNYDIDVFQPLFAKLATHTDRGPYTGRVGTDDVDLKDTAYRAIADH 304

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337
            R+ +F IADG +P NEGRGYVLRRI+RRA  Y +  L         L+P +    G  Y
Sbjct: 305 ARTLAFAIADGAVPNNEGRGYVLRRILRRATRYGQQILHCAPGFFATLIPVVVETFGETY 364

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHG 395
           PEL  A+  I E ++ E++ FG  LDRG+     +   L ++++  ++G+ AF +YDT G
Sbjct: 365 PELRAAESTILEIVQEEEQAFGDMLDRGIKFFTELEGELKENKVLEISGEKAFFMYDTLG 424

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ + +    GL+ +D+  F  A+E Q++R+R       +G        + E     
Sbjct: 425 FPVDLTELMAQEAGLS-VDMAGFANAMETQKTRSRQAQKTARAGNA-----PVLELVAE- 477

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVE 512
                   + +  + ++               + + V A+  +   +     A  G  V 
Sbjct: 478 --------QTAWLVDQNVLPTDDGFKYKWDVQLPATVMALYGKDGFLTGDSTADQGDFVG 529

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI------GDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +V D++ FYAEAGGQ  D G             R  +TDVQ  A  +      VE G + 
Sbjct: 530 IVLDKSSFYAEAGGQEADVGTLEFLDEAGTITGRFTVTDVQVYAGFLLHK-GAVEEGSIA 588

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            + ++   +DY+ RR ++ NHS TH+L+ AL  +LG    Q GS    + LRFD  H + 
Sbjct: 589 VDQAVNCKVDYERRRMIAPNHSMTHVLNAALRNVLGEKCDQRGSLCNNEKLRFDFAHKRA 648

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYED 685
           +T  E+K++E+     +A   PV +++M+  DA A  G  A+ G  Y D VRV+++    
Sbjct: 649 MTMLEIKAVEEFCQKSVADAQPVKSKVMSLADAQAIDGVRAVFGEVYPDPVRVIAIGDS- 707

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S   CGGTH+ +T E     +V E+++  GIRR+ A+T   A+  L G        
Sbjct: 708 ---SSVEFCGGTHLENTAEAEAFVLVEETAVAKGIRRVTAVTKDAAKRALAG-------- 756

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN----FMSHII 801
                V    +V ++E++      L       +  L+   +S    A++      +    
Sbjct: 757 ----GVKFQALVDKIEQLPATTSGLYKQAGSARKDLDAAFVSAVLKAELRTRLEAIQKKA 812

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV----DLAR 857
           ++   K L+  +D +   ++  + + +   +EK  ++++ V  D+     A     +  +
Sbjct: 813 NDAAKKALQQRVDLVLNDVKKDVAVAL---EEKMQTLVLNV--DIAADSKASQRVMNTVK 867

Query: 858 LSAKVLG--------GGGGG 869
             A  +          G GG
Sbjct: 868 EIAPEMAFLGVSEAESGSGG 887


>gi|156089757|ref|XP_001612285.1| alanyl-tRNA synthetase family protein [Babesia bovis]
 gi|154799539|gb|EDO08717.1| alanyl-tRNA synthetase family protein [Babesia bovis]
          Length = 978

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 284/965 (29%), Positives = 449/965 (46%), Gaps = 105/965 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAV 61
           +R+ F+  F+K+GH    SS ++P NDPTL+F N+GM  FK+I TG+          + V
Sbjct: 25  VRSEFIRHFEKHGHVFWKSSPVLPHNDPTLLFANAGMNQFKDIITGKADQSTEYGRLRRV 84

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VGR + HHTFFEMLGN+SFG YFK+ AI +AW+L+T+ + LD
Sbjct: 85  CNSQKCIRAGGKHNDLDDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDMAWELMTEVYKLD 144

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + RLY+T +           DEEA  LW +   L A +I+     DNFW MA+TGPCGPC
Sbjct: 145 KSRLYVTYFGGDPKLPNCGPDEEARDLWLR--HLPASRILPFGMKDNFWEMADTGPCGPC 202

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SEI +D            + +    +E+WNLVFMQ+ +++     +LP+  +DTGMGLER
Sbjct: 203 SEIHYDHI-GGRDAASLVNADDPMVVELWNLVFMQYNRKSDGSVELLPRPCVDTGMGLER 261

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNN---IVNHRVIVDHLRSSSFLIA 287
           +  VL+   +NYD DLF  +     ++      Y G++    V +RV+ DH R  +  IA
Sbjct: 262 VCAVLKSSNSNYDGDLFTDIFAYVNKLMPHLPPYGGSDSMIDVAYRVVADHARCLTVAIA 321

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG+ P+N+GRGYVLRRI+RRA+ Y +  LG + P M  L+  +   +G A+PE+      
Sbjct: 322 DGVEPSNDGRGYVLRRILRRAVRYGKEHLGSSGPFMSKLVDCVVASLGVAFPEIQNNNDK 381

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG------KDEILNGDVAFKLYDTHGLPLDI 400
           I  T+ +E+  F +TLD+G      +++ L       KD +++G  AF LY + G P D+
Sbjct: 382 IAATIHNEEVLFLETLDKGCDRFRKMVAKLQAGTENSKDLVVSGADAFLLYSSFGFPPDL 441

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +    GL  +DI  FN+  +  +  +            + +   L     A      
Sbjct: 442 TQLMAREMGL-DVDIDGFNEHFKRHQQLSEKKLCKSDDPVEQGM-ADLLSTLSADVLATI 499

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
               G +   +  K        D+       V A      + +    G    +V D+TPF
Sbjct: 500 SNSIGGRVTDDSLKYHGFAEAYDVDLEYDVEVLAQWSLSGLNKPLTEGDVFVLVLDRTPF 559

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+ D G          +  V K A  +F      E G       +   +DY+ R
Sbjct: 560 YAESGGQIWDVGT----LGPFNVMKVLKMAGMVFHFCVYHE-GNAMPGARVKAKVDYKRR 614

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            +++ NH+ THLL+  L  +      Q GS +  + L+FD+  +K +    L+ IED + 
Sbjct: 615 VKVACNHTGTHLLNFVLREVYDEQSYQKGSQLDEEKLKFDIAANKQMPDETLQRIEDRMQ 674

Query: 641 DIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSV----EYEDGGVHSSALCG 695
           +II  N  +  R ++ +DA+   G  A     Y + VRVV++    +  DG  +S  +CG
Sbjct: 675 EIIDANWKIEVREIDFKDAVEIPGIRANFTDVYPEVVRVVAMTKDGQPIDGKAYSVEICG 734

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS-------HLMGQDEKLKSL--- 745
           GTHV  TG +    IV E S+  G+RR+   T +++         +    +     L   
Sbjct: 735 GTHVPFTGVLKSAIIVGEESVSKGVRRLTLATNEKSEDSKAILASYWQQLETLESELYKF 794

Query: 746 ---------------------ASFLKVSQG---------NVVGRVEEIWEEYRKLQLIHA 775
                                A   ++            ++  + + +  +  +   +H 
Sbjct: 795 SDGMDTATMAQQANDNMKRLTALRFQMQSEKLLPLLGRRDLKNKFDTLINQQVEAGKVHQ 854

Query: 776 KRKLQLN-------VEDLSCHKIADVNFMSHIIS--EVDSKELKS-------VMDALQKK 819
           KR   +        V                 +   ++D+ +L+            L K 
Sbjct: 855 KRLGVIAKNMSTEYVNKFKAGDFGSAKVTLGTVDMIKMDANDLEGDVKSVNLFAQTLSKA 914

Query: 820 IQSGIIMLVGISKEKK-ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +    I++   +++    S   VV        +A+ LA+ +A  L     G +  +A+  
Sbjct: 915 LPKMAILITSKNRDSTCVSCRCVVP--AGTGLDAIALAKEAAISL-----GYQQDIARGS 967

Query: 879 GPNGN 883
             N +
Sbjct: 968 ATNAS 972


>gi|327304957|ref|XP_003237170.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326460168|gb|EGD85621.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 934

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 282/962 (29%), Positives = 439/962 (45%), Gaps = 123/962 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F+KNGH                               G   P       +  
Sbjct: 23  VRDTFLDYFEKNGHTF-----------------------------GTVDPNSDFAQLKRA 53

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 54  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 113

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA  +W+   G+  D I+     DNFW M + GPCGPCS
Sbjct: 114 PDRLYVTYFEGNEAAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 172

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+
Sbjct: 173 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 231

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L  A + +TG +                 +RV+ DHLR+ +F
Sbjct: 232 VSILQNKSSNYDTDVFTPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTF 291

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ +
Sbjct: 292 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIRR 351

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D+
Sbjct: 352 KQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 411

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L   D           R +A+  S G     ++ +  ++            
Sbjct: 412 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKTASDLLKLTVH----------- 455

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   ++++               + + +KAI    E+++      + +++ ++ D+
Sbjct: 456 ----TLSTLEKNGVPKTDDDAKFGKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 511

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  + DG         +   G  +H   ++ G      S++   D 
Sbjct: 512 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 571

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   I+ ++L+ IE 
Sbjct: 572 LRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEA 631

Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V    +        +G  A+ G  Y D VRVVSV               
Sbjct: 632 KSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 691

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A              
Sbjct: 692 WEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRIAREFGERL 751

Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780
                      +D ++KSL   L     + V + +      +I ++    Q    K +++
Sbjct: 752 NRFEKMPASPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVK 811

Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             ++ +S          + +  +    + K +   ++ ++ K+    + +       K +
Sbjct: 812 TAIDAISAYFEENTESPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAADA-SKVA 870

Query: 838 VLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               VT DL     +A + A   + ++ GG  GG+  +A   G   NK D+A+     +L
Sbjct: 871 HGCYVTPDLTTKGASANEWASAVSSIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYL 929

Query: 897 KK 898
           +K
Sbjct: 930 EK 931


>gi|311257039|ref|XP_003126924.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 769

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 263/749 (35%), Positives = 387/749 (51%), Gaps = 52/749 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F +    +R  A+  S G G+G  + I   +       +  G
Sbjct: 424 LTGLIAEEKGL-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYAIEELRE-RG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S                 +     + V A+ +    VEE  +GQ+  VV D+T 
Sbjct: 478 LEATDDSPK----YNYHSDSSGSYVFESAVATVMALRRDRMFVEEVCTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLKVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N++I    PV  +           G  A+    Y D VRVVS+             
Sbjct: 653 EELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             G + S   CGGTH+ ++       +  
Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVMEE 741


>gi|237842821|ref|XP_002370708.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211968372|gb|EEB03568.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
          Length = 1037

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 283/944 (29%), Positives = 435/944 (46%), Gaps = 123/944 (13%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
           +  ++R  +LEFF+  GH + PSS +IP  D TL+F N+GM  FK IF GQ         
Sbjct: 25  SGEAVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSK 84

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
              V   QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK  AI  AW LLT+ 
Sbjct: 85  LRRVADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEV 144

Query: 118 FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           + + + RLY + +           DEEA  +W +   L A++++     +NFW MA+TGP
Sbjct: 145 YKIPKDRLYASYFGGDPRLPSCPPDEEARDIWLQY--LPANRVLPFGAKENFWEMADTGP 202

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWNLVFMQ+ ++       LP   +DTGM
Sbjct: 203 CGPCSEIHYDRIGGRDASS-LVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG----------MKYEGNNIVNHRVIVDH 278
           GLER+A+VLQ+K +NYD DLF  L     +++            + +    + +RV+ DH
Sbjct: 262 GLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADH 321

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337
            R  +  IADG  P+NEGRGYVLRRI+RRA+ YAR  LG  E     L+P + + +G  +
Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETF 381

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395
           PE+ + +  +   L  E+++F +TLD G+     V + L     ++  G  AF LY T+G
Sbjct: 382 PEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYG 441

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGA 454
            PLD+ Q +    GL  +D   F +  +  R+ +        G+G    +    +     
Sbjct: 442 FPLDLTQLMAEEVGL-QVDAEEFERKFDAHRAASENTSFKQGGAGAVYALPPDQRHLLAQ 500

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-----GQ 509
           ++ +               +             + + V AI        E  +     G+
Sbjct: 501 SRKVPPTDDSAKYEWNVKDQAALMTQDAVEAAPIKAKVMAIWDGKRFAPEVTAVASPTGE 560

Query: 510 K-VEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
             V V+ D+T FYAE GGQ+GD G    +      ++ D QK  +   +H   + +G LR
Sbjct: 561 NLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGDF-ILHIGSMSKGTLR 619

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS----------------------- 603
               LV  +DY  R +L+ +H+ THLL+ AL  +L                         
Sbjct: 620 EGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNGIRI 679

Query: 604 --------------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
                          + Q GS +    LRFD    KP+ + ++ ++E+ V D IAQ  PV
Sbjct: 680 CESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQARPV 739

Query: 650 VTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEY-------------EDGGVHSSALCG 695
             + +  E A+   G  A+ G  Y D VRVVSV                +    S  LCG
Sbjct: 740 HYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIELCG 799

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIE--------------------AITGQRARSHL 735
           GTH+ +  ++    I+SE S+  G+RR+                       +   A   L
Sbjct: 800 GTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLASAPREL 859

Query: 736 MGQDEKLKSLASFLK-------VSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDL 786
              ++++      L        V + ++V ++E+  +   +LQ   +K   K    + + 
Sbjct: 860 AALEKEVAKARGLLDGAGPLPLVGKRSLVKQLEQAQKALLELQKARSKELVKEAKKLGEE 919

Query: 787 SCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLV 828
              +     F+   + ++  D K L +    L +       +LV
Sbjct: 920 LGTEHKTKPFLVLNLPQLLGDGKALDAASQTLHQAAPDLPFLLV 963


>gi|221485680|gb|EEE23961.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
          Length = 1037

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 283/944 (29%), Positives = 435/944 (46%), Gaps = 123/944 (13%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
           +  ++R  +LEFF+  GH + PSS +IP  D TL+F N+GM  FK IF GQ         
Sbjct: 25  SGEAVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSK 84

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
              V   QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK  AI  AW LLT+ 
Sbjct: 85  LRRVADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEV 144

Query: 118 FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           + + + RLY + +           DEEA  +W +   L A++++     +NFW MA+TGP
Sbjct: 145 YKIPKDRLYASYFGGDPRLPSCPPDEEARDIWLQY--LPANRVLPFGAKENFWEMADTGP 202

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWNLVFMQ+ ++       LP   +DTGM
Sbjct: 203 CGPCSEIHYDRIGGRDASS-LVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG----------MKYEGNNIVNHRVIVDH 278
           GLER+A+VLQ+K +NYD DLF  L     +++            + +    + +RV+ DH
Sbjct: 262 GLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADH 321

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337
            R  +  IADG  P+NEGRGYVLRRI+RRA+ YAR  LG  E     L+P + + +G  +
Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETF 381

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395
           PE+ + +  +   L  E+++F +TLD G+     V + L     ++  G  AF LY T+G
Sbjct: 382 PEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYG 441

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGA 454
            PLD+ Q +    GL  +D   F +  +  R+ +        G+G    +    +     
Sbjct: 442 FPLDLTQLMAEEVGL-QVDAEEFERKFDAHRAASENTSFKQGGAGAVYALPPDQRHLLAQ 500

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-----GQ 509
           ++ +               +             + + V AI        E  +     G+
Sbjct: 501 SRKVPPTDDSAKYEWNVMNQAALMTQDAVEAAPIKAKVMAIWDGKRFAPEVTAVASPTGE 560

Query: 510 K-VEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
             V V+ D+T FYAE GGQ+GD G    +      ++ D QK  +   +H   + +G LR
Sbjct: 561 NLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGDF-ILHIGSMSKGTLR 619

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS----------------------- 603
               LV  +DY  R +L+ +H+ THLL+ AL  +L                         
Sbjct: 620 EGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNGLRI 679

Query: 604 --------------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
                          + Q GS +    LRFD    KP+ + ++ ++E+ V D IAQ  PV
Sbjct: 680 CESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQARPV 739

Query: 650 VTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEY-------------EDGGVHSSALCG 695
             + +  E A+   G  A+ G  Y D VRVVSV                +    S  LCG
Sbjct: 740 HYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIELCG 799

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIE--------------------AITGQRARSHL 735
           GTH+ +  ++    I+SE S+  G+RR+                       +   A   L
Sbjct: 800 GTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLASAPREL 859

Query: 736 MGQDEKLKSLASFLK-------VSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDL 786
              ++++      L        V + ++V ++E+  +   +LQ   +K   K    + + 
Sbjct: 860 AALEKEVAKARGLLDGAGPLPLVGKRSLVKQLEQAQKALLELQKARSKELVKEAKKLGEE 919

Query: 787 SCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLV 828
              +     F+   + ++  D K L +    L +       +LV
Sbjct: 920 LGTEHKTKPFLVLNLPQLLGDGKALDAASQTLHQAAPDLPFLLV 963


>gi|221502948|gb|EEE28658.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 1037

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 283/945 (29%), Positives = 435/945 (46%), Gaps = 123/945 (13%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
           +  ++R  +LEFF+  GH + PSS +IP  D TL+F N+GM  FK IF GQ         
Sbjct: 25  SGEAVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSK 84

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
              V   QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK  AI  AW LLT+ 
Sbjct: 85  LRRVADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEV 144

Query: 118 FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           + + + RLY + +           DEEA  +W +   L A++++     +NFW MA+TGP
Sbjct: 145 YKIPKDRLYASYFGGDPRLPSCPPDEEARDIWLQY--LPANRVLPFGAKENFWEMADTGP 202

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWNLVFMQ+ ++       LP   +DTGM
Sbjct: 203 CGPCSEIHYDRIGGRDASS-LVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG----------MKYEGNNIVNHRVIVDH 278
           GLER+A+VLQ+K +NYD DLF  L     +++            + +    + +RV+ DH
Sbjct: 262 GLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADH 321

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337
            R  +  IADG  P+NEGRGYVLRRI+RRA+ YAR  LG  E     L+P + + +G  +
Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETF 381

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395
           PE+ + +  +   L  E+++F +TLD G+     V + L     ++  G  AF LY T+G
Sbjct: 382 PEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYG 441

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGA 454
            PLD+ Q +    GL  +D   F +  +  R+ +        G+G    +    +     
Sbjct: 442 FPLDLTQLMAEEVGL-QVDAEEFKRKFDAHRAASENTSFKQGGAGAVYALPPDQRHLLAQ 500

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-----GQ 509
           ++ +               +             + + V AI        E  +     G+
Sbjct: 501 SRKVPPTDDSAKYEWNVMNQAALMTQDAVEAAPIKAKVMAIWDGKRFAPEVTAVASPTGE 560

Query: 510 K-VEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
             V V+ D+T FYAE GGQ+GD G    +      ++ D QK  +   +H   + +G LR
Sbjct: 561 NLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGDF-ILHIGSMSKGTLR 619

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS----------------------- 603
               LV  +DY  R +L+ +H+ THLL+ AL  +L                         
Sbjct: 620 EGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNGIRI 679

Query: 604 --------------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
                          + Q GS +    LRFD    KP+ + ++ ++E+ V D IAQ  PV
Sbjct: 680 CESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQARPV 739

Query: 650 VTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEY-------------EDGGVHSSALCG 695
             + +  E A+   G  A+ G  Y D VRVVSV                +    S  LCG
Sbjct: 740 HYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIELCG 799

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIE--------------------AITGQRARSHL 735
           GTH+ +  ++    I+SE S+  G+RR+                       +   A   L
Sbjct: 800 GTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLASAPREL 859

Query: 736 MGQDEKLKSLASFLK-------VSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDL 786
              ++++      L        V + ++V ++E+  +   +LQ   +K   K    + + 
Sbjct: 860 AALEKEVAKARGLLDGAGPLPLVGKRSLVKQLEQAQKALLELQKARSKELVKEAKKLGEE 919

Query: 787 SCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVG 829
              +     F+   + ++  D K L +    L +       +LV 
Sbjct: 920 LGTEHKTKPFLVLNLPQLLGDGKALDAASQTLHQAAPDLPFLLVT 964


>gi|126632676|emb|CAM56636.1| novel protein similar to vertebrate aminolevulinate delta-synthase
           1 (ALAS1) [Danio rerio]
          Length = 917

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 291/945 (30%), Positives = 431/945 (45%), Gaps = 95/945 (10%)

Query: 7   IRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60
           +R  F++FF++  GH ++PSSS+ P  DP+L+F N+GM  FK I  G   P      Y+ 
Sbjct: 2   VRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMVSYRR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKCVRAGGKHNDL +VG+   HHTFFEMLGN+SFG YFK  A  +AW LLT+E+ +
Sbjct: 62  VVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTEEYGI 121

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
             +RLY++ +          DEE   +W    GL AD ++     DNFW M ETGPCGPC
Sbjct: 122 PAQRLYVSYFSGDPANGLPADEETRDIWLS-MGLRADHVLPFGMKDNFWEMGETGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI +D            + +    +EIWNLVFMQ+ +++      LP+ S+DTGMGLER
Sbjct: 181 TEIHYDHIGN-RNAASLVNADSPDVVEIWNLVFMQYNRESNGSLRALPQCSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283
           + TVLQ K +NYD DLF  L+ A  Q +                  + +RV+ DH+R+  
Sbjct: 240 LVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHIRTIC 299

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQ 342
             IADG+ P   G   VLRRI+RRA+ ++   L   E  +  L+P +   +G AYPEL  
Sbjct: 300 VCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVANLLGDAYPELNT 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401
               I + +   +  F  +L +G  ++D  LS++ ++       VA+ LY   G PLD++
Sbjct: 360 ESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFPLDLI 419

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
             +L  +G          + ++             G    +    SL E           
Sbjct: 420 DLMLEEKGKIVD-----KKEMKVLEDEYEKSEEDEGEKLDQLDLHSLAELQR-------- 466

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                 +     + V A+   G +V E   GQ   V+ DQT FY
Sbjct: 467 QRVPHTDDSPKYCYSVGSDGQYVFEPCKASVLALYCDGALVSEVRQGQHCAVILDQTSFY 526

Query: 522 AEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AE GGQ  D G    DG   +       +  G +V H +     LRT   + L +D   R
Sbjct: 527 AEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLHVDEAWR 586

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
               INH+ATH+L+ AL  +LG  VSQ GS  + + LRFD +    +T +EL+ +E+ V 
Sbjct: 587 LGCMINHTATHVLNFALRELLGPVVSQRGSHCSANRLRFDFSVKGSLTVSELQKVEELVL 646

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--------VEYEDGGVHSSA 692
           +II QN  V    +    A        +   Y D VRVVS        +  E     S  
Sbjct: 647 NIIRQNADVHVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLLASERAEQTSVE 706

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL---MGQDEKLKSLASFL 749
           LC GTH+  TG I    +VSE  +  G+ RI A TG  A           E+L+SL + +
Sbjct: 707 LCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQALQEELESLEARM 766

Query: 750 KVSQGNVVGRVEEIWEE---------------YRKLQLI-HAKRKLQLNVEDLSCHKIAD 793
            +S    +   + + +E               +++L+L    K  L+ +   +   +I +
Sbjct: 767 GLSNTLSIHEAKRLSKEVGHQINAVDITPMPQWKRLELQTRLKAVLKSSNNSIRKLEIKE 826

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
                          LK     L  K  +  +++  I  +     +   T       +A+
Sbjct: 827 A-------------ALK--AKELLDKHSNKPVVVDLIQTDS----ISGST-----GGSAI 862

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           + A      L GG   G    A+  G N  K +  +A +  + ++
Sbjct: 863 EWALSVCSRL-GGNAEGAKDTAKGVG-NAVKVED-VAEILHWAEE 904


>gi|317497358|ref|ZP_07955681.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895427|gb|EFV17586.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 765

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 293/791 (37%), Positives = 436/791 (55%), Gaps = 44/791 (5%)

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY++D+EAF++W+K  G++ ++I R    DNFW     GPCGPCSEI++D
Sbjct: 3   GLDPDRLYPSVYEDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYD 61

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      + +RY+E+WN VF QFE         L   +IDTGMGLER+A V
Sbjct: 62  RGEKYGCGSPDCTVGCDCDRYMEVWNNVFTQFENDGHNHYTELENKNIDTGMGLERLAVV 121

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +QE  + +D+D  K +     +V G+ Y  +    V+ RVI DH+RS++F+++DGI P+N
Sbjct: 122 VQEVDSIFDVDSIKAIRDEICKVAGVTYGADHETDVSIRVITDHIRSATFMLSDGITPSN 181

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG     +  +   +  E    YPEL +    I   L  E
Sbjct: 182 EGRGYVLRRLIRRAARHGRLLGIDHLFLTDISKVVIRESKDGYPELEEKAEFIFNHLSQE 241

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +++F KT+D+GL +L  +   + +   + L G  AFKLYDT+G PLD+  +IL  +G   
Sbjct: 242 EKQFNKTIDQGLSILADMEKAMNEKGSKELAGADAFKLYDTYGFPLDLTIEILEEKGFT- 300

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + ++ QR  ARA          +   +   +    T+F+GYD L         
Sbjct: 301 VDKEGFEKEMQVQRETARAARKTTNYMGADATVYEQLDPAMTTKFVGYDEL--------- 351

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              + A+  + E+V     G K  +V DQT FYA +GGQ  D G
Sbjct: 352 --------------TCEGEITAMTTETEVVSALNKGDKGTIVADQTAFYATSGGQEADKG 397

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             I      ++ DV K + G F H   V  G        V T++ +NR   + NHSATHL
Sbjct: 398 VIISGDASFEVEDVIKLSGGKFGHVGHVVEGTFNVGDKAVFTVNEKNRALGAKNHSATHL 457

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q GS    + LRFD TH  P++  E+  +E  VN+ IAQ+LPVVT+
Sbjct: 458 LQKALREVLGTHVEQAGSLNNAEHLRFDFTHFSPLSDDEIARVEKIVNEKIAQDLPVVTK 517

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E+A  +GA AL G KY D VRVVS+     G  S  LCGGTHV +TG I    I+S
Sbjct: 518 VMSMEEAKKTGAMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVKNTGAITAFKILS 572

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + +G+RRIEA+T Q   ++   Q+E+LK  A  LK +   ++ R+E +  E ++L+ 
Sbjct: 573 ETGVASGVRRIEAVTDQGVFNYYHKQEEELKEAAKALKATPATLLTRIESLLAEVKELKS 632

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +L  + L        ++  V  ++  I +VD   L+ + D L++K+  G+I+L
Sbjct: 633 ENESLKSKLAKDALGDVMDQVEEVKGVKLLATSIEDVDMNGLRELGDNLKEKLGEGVIVL 692

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
               K+ K  ++ +VT++      +A +L +  A  +GGGG GGRP+MAQ+GG N     
Sbjct: 693 AS-QKDGKVFLVAMVTDEAQKAGAHAGNLIKAIAGCVGGGG-GGRPNMAQAGGKNPAGIP 750

Query: 887 QAIAGVASFLK 897
           +A+A V   L+
Sbjct: 751 EAVAKVKEILE 761


>gi|66475244|ref|XP_627438.1| alanyl-tRNA synthetase (with HxxxH domain) [Cryptosporidium parvum
            Iowa II]
 gi|46229265|gb|EAK90114.1| alanyl-tRNA synthetase (with HxxxH domain) [Cryptosporidium parvum
            Iowa II]
          Length = 1003

 Score =  602 bits (1552), Expect = e-169,   Method: Composition-based stats.
 Identities = 301/1002 (30%), Positives = 468/1002 (46%), Gaps = 129/1002 (12%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
                +R  F+++F+   H    SS +IP NDPT++F N+GM  FK+IF G  +P      
Sbjct: 22   TGDEVRRQFVKYFEGLDHTFYRSSPVIPLNDPTILFINAGMNQFKSIFLGTVEPNSELSK 81

Query: 59   -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE AI+ A+ LLT+ 
Sbjct: 82   LVRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIEWAFKLLTQV 141

Query: 118  FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + + + RLY T +           DEEA ++W K   L  D+I+   + +NFW MA+TGP
Sbjct: 142  YGIPKDRLYATYFGGDPKLPSCPPDEEAKRIWLKY--LPEDRILSCGSKENFWEMADTGP 199

Query: 169  CGPCSEIFFDQGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
            CGPCSEI +D+     GG       +++    IEIWNLVFMQ+ ++       LPK  +D
Sbjct: 200  CGPCSEIHYDR----IGGRDAISLVNKDDPDVIEIWNLVFMQYYREVDSTLTPLPKKCVD 255

Query: 226  TGMGLERMATVLQEKTNNYDIDLFKHLIQASE---------------QVTGMKYEGNNIV 270
            TGMGLER+ ++LQ KT+NYDIDLFK +                    +V  +       +
Sbjct: 256  TGMGLERLVSILQNKTSNYDIDLFKPIFDQIHQVISSSGVQIPRYSGKVGDIDDPEMIDM 315

Query: 271  NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL----GYTEPLMMHLL 326
            ++RVI DH+R+ +  IADG +P+NEGRGYVLRRI+RRA+ Y           EP    L+
Sbjct: 316  SYRVISDHIRTLTIAIADGCIPSNEGRGYVLRRILRRAIRYGSQYLKAGSNGEPWFYKLV 375

Query: 327  PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---------G 377
             ++   MG+ Y E+ +   +I+E +  E+++F KTL +G    + V++ L          
Sbjct: 376  DSVSNIMGNYYKEIPENIQIIKEVILDEEKQFSKTLFKGTERFNKVINKLKSSQNNQQDQ 435

Query: 378  KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
              ++     AF+LY T+G P+D+ + +   +G    D   F   +E     +   +    
Sbjct: 436  NKKLFPASEAFQLYSTYGFPMDLTELMANEQGF-DFDRQGFQLCMENHHLASEGKNNKSF 494

Query: 438  SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
                + I     +     +F     L+ +    + +     K          S + AI  
Sbjct: 495  ---DDLILKPDIQNNLLLEF----GLKETDDQYKYQSQTQIKDFY-------SNLIAIFD 540

Query: 498  QGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTG-----CAIGDGIRLQITDVQKKAE 551
              +++      G+ + ++FD+T FY+E+GGQ+ DTG         D + +      KK  
Sbjct: 541  GNQLLNATEIQGKVIGLIFDKTTFYSESGGQVADTGFIDFQYNNNDEVSIFQVIDCKKFG 600

Query: 552  GIFVHHAIVERGILRTEMSLV--LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
               +H  I+ +G +     L   +++DY  R  +  NH+ TH+L+ AL  ILGS   Q G
Sbjct: 601  NYVLHIGILLQGKIEISPELKSLMSVDYSRRNLIKKNHTGTHILNFALRQILGSTCDQRG 660

Query: 610  SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALL 668
            S + P+ LRFD +  KP+T  +++ IE  +N II +        +            A+ 
Sbjct: 661  SVVDPNKLRFDFSSQKPLTLDQIEEIEKMINQIIQEKQTVYCQTVELSIAKQIPNIRAIF 720

Query: 669  GTKYNDRVRVVSV------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            G  Y D VRV+SV            +  D    S   CGGTHV +T EI+   I+SE  I
Sbjct: 721  GETYPDPVRVLSVSKSVDSLINSQTDNNDQEKVSIEFCGGTHVENTSEIISFSIISEEGI 780

Query: 717  RAGIRRIEAITGQR---ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL- 772
              GIRRI A+T  +   A  +     ++ K L          ++   +   +E + L L 
Sbjct: 781  AKGIRRIVAVTDNQSEIAIENAKRLKQEFKKLEELNGKELETLLNSFKSKLDETKLLPLL 840

Query: 773  -------------------IHAKRKLQLNVEDLSCHKI-----------ADVNFMSHIIS 802
                                  K+K +LN+      KI            +   +   I 
Sbjct: 841  YRRQLSQIIEENYKRVIADAKKKQKERLNMAKELATKIGQEYSQQLSSNNEFPALILNIK 900

Query: 803  EV--DSKELKSVMDALQKKIQSGIIMLV--GISKEKKASVLIVVTEDLLDRFNAVDLARL 858
            ++  DSK +  +   + KK     IML   G   +   SV+ ++ +   D+ ++ +  + 
Sbjct: 901  QIQGDSKSMDVIGQDISKKYPEAPIMLFTSGEFNDNGVSVISIMPKSKSDKLSSSNWLKS 960

Query: 859  SAKVLGGGGGGGRPHMAQSGGPNG--NKADQAIAGVASFLKK 898
            + ++  G  GG    +   G         +  I      LKK
Sbjct: 961  TIELCNGKCGG--TDLRSVGSSKTGSESIESMIQLALDLLKK 1000


>gi|260784931|ref|XP_002587517.1| hypothetical protein BRAFLDRAFT_237056 [Branchiostoma floridae]
 gi|229272665|gb|EEN43528.1| hypothetical protein BRAFLDRAFT_237056 [Branchiostoma floridae]
          Length = 751

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 254/758 (33%), Positives = 388/758 (51%), Gaps = 55/758 (7%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
               +R  F+++F+ K+ H  + SSS IP +DPTL+F N+GM  FK IF G   P     
Sbjct: 7   TGDQVRDMFIKYFEEKHEHLEVHSSSTIPLDDPTLLFANAGMNQFKPIFQGTVDPSHPMA 66

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ A   AWDLL  
Sbjct: 67  KYRRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEACSWAWDLLVN 126

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + L+  R+Y+T +          D E  ++W  + G++ D+I+  +  DNFW M E GP
Sbjct: 127 GYKLEVERMYVTYFGGNEAQGLQPDLECRQIWLDL-GVAEDRILPGSMKDNFWEMGEVGP 185

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWNLVFMQ  ++       LPK +ID GM
Sbjct: 186 CGPCSEIHYDRV-GGRDASHLVNMDVPEVLEIWNLVFMQNNREPDGSITNLPKKNIDCGM 244

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +V+Q   +NYD DLF     A ++ TG++               + +RV+ DH 
Sbjct: 245 GLERILSVVQGVLSNYDTDLFTPFFDAIQKATGVRPYTGKVGADDADGIDMAYRVLADHA 304

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+      +GSA+P
Sbjct: 305 RTLTISMSDGGKPDNVGRGYVLRRILRRGVRYATEKLNAPRGFFASLVDVAVQTLGSAFP 364

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +   ++++ +  E+E+F KTL RG  +L+  ++ LG  +++ G+ A+ LYDT+G P+
Sbjct: 365 EITKDPQMVKDIINEEEEQFLKTLSRGRRVLEKRITQLGDSKVVPGETAWLLYDTYGFPV 424

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   +   +GL  +D  ++ +     + +A+  S G G+G  + +   +       +  
Sbjct: 425 DLTSLMAEEKGLT-LDCAAYEE----CKKQAQIRSQGKGAGVDDSVNLDVHAINELQE-- 477

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                          +         +    ++ V ++ +  + V+E   GQ+  V+ D+T
Sbjct: 478 ---KGSPPTDDSPKYQYSHDDNGNYVFQPCTATVVSLRRDKQFVQEVTQGQECGVLLDRT 534

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL------QITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
            FYAE GGQ+ D G  + +   +      + T    +  G +V H     G L     + 
Sbjct: 535 NFYAEQGGQIYDEGYLVKEEDEVKRTAETEFTVKNCQVRGGYVMHIGTLVGTLNVGDKVK 594

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +D   RR +  NH++TH+L+ AL  +LG    Q GS + PD LRFD +    +T+A++
Sbjct: 595 LFVDEARRRPIMSNHTSTHVLNFALRQVLG-EADQRGSLVAPDRLRFDFSAKGAMTTAQI 653

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVE--------- 682
           K  E   N+II +N  V  +      A    G  A+    Y D VRV+S+          
Sbjct: 654 KEAEKICNEIIKKNEQVYAKEAALAQAKAIQGLRAVFDETYPDPVRVLSIGISVEDMLSD 713

Query: 683 --YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                G V S   CGGTH+   G    L IV+E +I  
Sbjct: 714 PTSPAGTVTSVEFCGGTHLQRVGHAGDLVIVTEEAIAK 751


>gi|209877330|ref|XP_002140107.1| alanyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
 gi|209555713|gb|EEA05758.1| alanyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
          Length = 984

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 290/963 (30%), Positives = 445/963 (46%), Gaps = 117/963 (12%)

Query: 3   NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
              ++R  F++FF     H+   S+S+IP NDPTL+FTN+GM  FK+IFT   +P     
Sbjct: 12  TGKNVRQQFIDFFVNKANHKFYRSASVIPLNDPTLLFTNAGMNQFKSIFTETVEPNSELS 71

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
               V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE AI+ A++LLTK
Sbjct: 72  KLVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIKWAFELLTK 131

Query: 117 EFDLDQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
            +++   RLY+T +  D+         EA  +W     L  ++II  +  +NFW MA+ G
Sbjct: 132 VYEIPSERLYVTYFGGDDKLPACPVDEEARDIWMNY--LPKERIISCSAKENFWEMADVG 189

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSEI FD+           +++    IEIWNLVFMQ+ ++      +LP   +DTG
Sbjct: 190 PCGPCSEIHFDRI-GGRDASHLVNKDDPSVIEIWNLVFMQYYRETDGSLVLLPAKCVDTG 248

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-----------MKYEGNNIVNHRVIV 276
           MGLER+ +VLQ K +NYD DLF  +      +                     +++RVI 
Sbjct: 249 MGLERLVSVLQNKLSNYDTDLFIPIFNQIHSIFPNIPQYKGMVGDKDDPNKIDMSYRVIA 308

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL---GYTEPLM-MHLLPALCTE 332
           DH+R+ S  I+DG +P+NEGRGYVLRRI+RRA+ Y R     G    +    L+ ++   
Sbjct: 309 DHIRTLSVAISDGCIPSNEGRGYVLRRILRRAVRYGRQYFNAGMDGNMWFYKLVDSVSNI 368

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL------------GKDE 380
           +G  YPE+++ K  I+  +  E+++F KTL +G+   + V + L                
Sbjct: 369 LGDYYPEIVEKKDTIKSAIFEEEKQFSKTLGKGIERFNRVTNKLLKSSSPINSKLKNIRL 428

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           I   + AF+LY T+G P+D+ + I    G+   D   F + +E  +  +           
Sbjct: 429 IFPANEAFQLYSTYGFPMDLTELIASELGME-FDHEGFKKCMENHQLASEGKFNKKLDKL 487

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
             K                   ++    +K    +       +L N     + AI    E
Sbjct: 488 VLKP-----------------DIQQHILLKYGLNLTDDIYKYNLNNECFGKLFAIYNGHE 530

Query: 501 IVEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVH 556
           +++ A      V ++FD+T +Y+E+GGQ+ D G       +    Q+ D QK    +   
Sbjct: 531 LIDTATCFHGIVGLIFDKTCYYSESGGQVSDIGYIELWEDNLNNFQVIDCQKFGNYVLHI 590

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
             ++E      + +    ID   R     NH+ATHLL++AL  +LG    Q GS + P  
Sbjct: 591 GVVLEGKFSVGDSNCHFLIDKDRRVMTMRNHTATHLLNYALRLLLGEKCDQRGSIVEPTK 650

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDR 675
           LRFD + +K +   E++ IED +N II     V   ++        SG  A+ G  Y D 
Sbjct: 651 LRFDFSANKALNINEIQQIEDIINKIIKDKQEVFCDVVPLNIAKEISGLRAIFGEAYPDP 710

Query: 676 VRVVSVEYEDGGVHS--------------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           VRV+SV      ++                 LCGGTHV +T +I    I+SE  I  GIR
Sbjct: 711 VRVLSVGIPVNELNDCNFGASKSLHIKTSVELCGGTHVLNTYDIGSFIILSEEGIAKGIR 770

Query: 722 RIEAITGQRARSH------LMGQDEKLKSL------ASFLKVSQGNVVGRVEEIWE---- 765
           RI A+T   A         L  + E+LK++          K        R+  + +    
Sbjct: 771 RIVAVTNDTANVAEDNTLILTSKFEQLKNIFGKELGKEITKCRVLLDETRILPLIKRKYL 830

Query: 766 ---------------EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE-- 808
                          + ++ +   A +K+  ++       +   N +   I EVD     
Sbjct: 831 SQFLDNQYQRVLDDAKLKQKERQSAAQKVAQDILSQLSKDLNIGNILVRNIQEVDGDIKC 890

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKK--ASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           ++ +   + K+      ML+      K   S L +V +       A      + ++ GG 
Sbjct: 891 IEIISQYIIKEFPKVSFMLLTSGSCNKNGISALAIVPQGEGKLLKANQWLHSTLEICGGK 950

Query: 867 GGG 869
            GG
Sbjct: 951 CGG 953


>gi|67594831|ref|XP_665905.1| cytosolic tRNA-Ala synthetase [Cryptosporidium hominis TU502]
 gi|54656773|gb|EAL35675.1| cytosolic tRNA-Ala synthetase [Cryptosporidium hominis]
          Length = 989

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 294/999 (29%), Positives = 459/999 (45%), Gaps = 125/999 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R  F+++F+   H    SS +IP NDPT++F N+GM  FK+IF G  +P      
Sbjct: 10  TGDEVRRQFVKYFEGLDHTFYRSSPVIPLNDPTILFINAGMNQFKSIFLGTVEPNSELSK 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
              V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE AI+ A+ LLT+ 
Sbjct: 70  LVRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIEWAFKLLTQV 129

Query: 118 FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           + + + RLY T +           DEEA K+W K   L  D+I+   + +NFW MA+TGP
Sbjct: 130 YGIPKDRLYATYFGGDPKLPSCPPDEEAKKIWLKY--LPEDRILSCGSKENFWEMADTGP 187

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           +++    IEIWNLVFMQ+ ++       LPK  +DTGM
Sbjct: 188 CGPCSEIHYDRIGGRDASS-LVNKDDPDVIEIWNLVFMQYYREVDSTLTPLPKKCVDTGM 246

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQAS---------------EQVTGMKYEGNNIVNHR 273
           GLER+ ++LQ KT+NYDIDLFK +                    +V  +       +++R
Sbjct: 247 GLERLVSILQNKTSNYDIDLFKPIFDQIYQVISSSGVQIPRYSGKVGDIDDPEMIDMSYR 306

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL----GYTEPLMMHLLPAL 329
           VI DH+R+ +  IADG +P+NEGRGYVLRRI+RRA+ Y           EP    L+ ++
Sbjct: 307 VISDHIRTLTIAIADGCIPSNEGRGYVLRRILRRAIRYGSQYLKAGSNGEPWFYKLVDSV 366

Query: 330 CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---------GKDE 380
              MG+ Y E+ +   +I+E +  E+++F KTL +G    + V++ L            +
Sbjct: 367 SNIMGNYYKEIPENIQIIKEVILDEEKQFSKTLFKGTERFNKVINKLKSSQNNQQDQNKK 426

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           +     AF+LY T+G P+D+ + +   +G    D   F   +E     +   +       
Sbjct: 427 LFPASEAFQLYSTYGFPMDLTELMANEQGF-DFDRQGFQLCMENHHLASEGKNNKSF--- 482

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
            + I     +     +F               ++   Q           S + AI    +
Sbjct: 483 DDLILKPDIQNNLIVEF-------------GLKETDDQYKYQTQIKDFYSNLIAIFDGNQ 529

Query: 501 IVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTG-----CAIGDGIRLQITDVQKKAEGIF 554
           +++     G+ + ++FD+T FY+E+GGQ+ DTG         D          KK     
Sbjct: 530 LIDATEIQGKVIGLIFDKTTFYSESGGQVADTGFIDFQYNNNDETSKFQVIDCKKFGNYV 589

Query: 555 VHHAIVERGILRTEMSLV--LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           +H  I+ +G +     L   +++DY  R  +  NH+ TH+L+ AL  ILGS   Q GS +
Sbjct: 590 LHIGILLQGKIEISPELKSLMSVDYSRRNLIKKNHTGTHILNFALRQILGSTCDQRGSVV 649

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALLGTK 671
            P+ LRFD +  KP+T  +++ IE  V+ II +        +            A+ G  
Sbjct: 650 DPNRLRFDFSSQKPLTLDQIEEIEKMVSQIIQEKQTVYCQTVELSIAKQIPNIRAIFGET 709

Query: 672 YNDRVRVVSV------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           Y D VRV+SV            +  D    S   CGGTHV +T EI+   I+SE  I  G
Sbjct: 710 YPDPVRVLSVSKSVDSLINSQTDNNDQEKVSIEFCGGTHVENTSEIISFSIISEEGIAKG 769

Query: 720 IRRIEAITGQR---ARSHLMGQDEKLKSLASF-----------LKVSQGN---------- 755
           IRRI A+T  +   A  +     ++ K L               K               
Sbjct: 770 IRRIVAVTDNQSEIAIENAKRLKQEFKKLEELNGKELETLLNSFKSKLDETKLLPLLYRR 829

Query: 756 -----VVGRVEEIWEEYRKLQLIHAK--RKLQLNVEDLSCHKIADVNFMSHIISEV---- 804
                +    + +  + +K Q       ++L   +      +++  N    +I  +    
Sbjct: 830 QLSQIIEEHYKRVIADAKKKQKERLNMAKELATKIGQEYSQQLSSNNEFPALILNIKQIQ 889

Query: 805 -DSKELKSVMDALQKKIQSGIIMLV--GISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
            DSK +  +   + KK     IML   G   +   SV+ ++ +   D+ ++ +  + + +
Sbjct: 890 GDSKSMDVIGQDISKKYPEAPIMLFTSGEFNDNGVSVISIMPKSKSDKLSSSNWLKSTIE 949

Query: 862 VLGGGGGGGRPHMAQSGGPNG--NKADQAIAGVASFLKK 898
           +  G  GG    +   G         +  I      LK+
Sbjct: 950 LCNGKCGG--TDLRSVGSSKTGSESIESMIQLALDLLKQ 986


>gi|303282971|ref|XP_003060777.1| alanyl-tRNA synthetase [Micromonas pusilla CCMP1545]
 gi|226458248|gb|EEH55546.1| alanyl-tRNA synthetase [Micromonas pusilla CCMP1545]
          Length = 972

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 271/927 (29%), Positives = 445/927 (48%), Gaps = 83/927 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            + IR TFL+FF+   H ++PSS ++P +DPTL+F N+GM  FK+IF G+  P       
Sbjct: 13  ANKIRQTFLDFFESKEHAVVPSSPVVPHDDPTLLFANAGMNQFKSIFLGKADPKGPLAKL 72

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
              T  QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG +FK  AI  AW+LLT  +
Sbjct: 73  KRATDTQKCIRAGGKHNDLDDVGKDTYHHTYFEMLGNWSFGDFFKREAIHWAWELLTSKE 132

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + LD+ RLY + +  DE        EA  +W ++  L  +K++     DNFW M + GP
Sbjct: 133 HYGLDESRLYASYFGGDESQGLPPDLEARDIWLEV--LPPNKVLPFGCEDNFWEMGDVGP 190

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWN+VF+QF ++       LP   +DTGM
Sbjct: 191 CGPCSEIHYDRI-GGRDAADLVNADDPNCLEIWNIVFIQFNREEGGVLKPLPAKHVDTGM 249

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279
           G ER+A++LQ+K +NYD D+F  + +   +         + G + EG   + +RV+ DH+
Sbjct: 250 GFERIASILQDKMSNYDTDVFTPIFERIREVTGAPPYTGLLGAEDEGEKDMAYRVVADHI 309

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +F IADG  P ++GR YVLRR++RRA+ + R  LG  +     L+  +    G  +P
Sbjct: 310 RTLTFAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAEQGFFQKLVAVVVELFGHVFP 369

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396
           E+++ +  + + +  E+E FG+TL +G+     + +   +D   +++G  AF L+++ G 
Sbjct: 370 EIVKHEKRVTDIIADEEESFGRTLLKGIDQFKKIAAKAKEDGGAVVDGAAAFLLWESFGF 429

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT--TEKIWFSLKEKYGA 454
           P+D+ + +    G+  +D   F+ A +E + ++RA        +   E    S  +K G+
Sbjct: 430 PIDLTEIMAEENGMT-VDTAGFDAAFKEAQEKSRAGGKKSDGPSLLFEAEATSWLQKNGS 488

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN-GVSSIVKAIVQQGEIVEEAVSGQK-VE 512
                +   +      +        P  D      S++VKAI+     VE     +  + 
Sbjct: 489 ----KWGKAKDIAHAHDAIPFTDDSPKYDGPEADPSAVVKAILTLNGFVESTEGVEGPIG 544

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI-LRTEMSL 571
           +V D+T FYAE+GGQ+ D G    +       +  K A G  +H      G  +    + 
Sbjct: 545 LVLDRTSFYAESGGQVCDVGVITTENGASLAVNEVKVAAGFVLHSGERVEGEAITVGNTC 604

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +DY  R  ++ NH+ TH+L+ AL ++LG  V Q GS +  + LRFD +H+KP+++ E
Sbjct: 605 AARVDYDRRANIAPNHTMTHVLNFALRSVLGDGVDQKGSLVDDEKLRFDFSHNKPMSNNE 664

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------ 684
           +K +E+ V + +  +L V  R +   DA   SG  A+ G  Y D VRVVSV         
Sbjct: 665 IKRVEEIVRERVGASLAVDAREVALADAKTISGLRAVFGEVYPDPVRVVSVGPTIDELLA 724

Query: 685 -----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                +   +S   CGGTH+++T +     ++ E+ I  GIRR+ A T   A + L    
Sbjct: 725 NPGSEEWTKYSIEFCGGTHLANTSQAEGFVLLEEAGIAKGIRRVVAATRGGAVAALATAA 784

Query: 740 EKLKSLASFLKVSQG-NVVGRVEEIWEEYR-----KLQLIHAKRKLQLNVEDL------- 786
                + +   +  G  +   +  +  +        +Q    + ++    + L       
Sbjct: 785 GIAARVDACDAMPPGPELDKEMAALKNDVDTAVMPAVQRAEIRDRMAATTKKLIAAAKEA 844

Query: 787 -----------------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                                  +  F+  +    D   LK    A+  K      +   
Sbjct: 845 AVAVKAAAKKAVEEKTAEVKAAGETVFVMRLGDGADPGALKDAA-AVAFKQDVACALFSA 903

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLA 856
            + + KA   +          +     
Sbjct: 904 DTVKGKAMCYVSAPPSATPAIDVKKWL 930


>gi|213648094|ref|ZP_03378147.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 465

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 242/473 (51%), Positives = 321/473 (67%), Gaps = 20/473 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
            +D   F  A+EEQR RAR              + ++     A++F GYD L 
Sbjct: 420 -VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHLE 465


>gi|171687707|ref|XP_001908794.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943815|emb|CAP69467.1| unnamed protein product [Podospora anserina S mat+]
          Length = 911

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 292/927 (31%), Positives = 435/927 (46%), Gaps = 94/927 (10%)

Query: 43  MVPFKNIFTGQE---KPVY--QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G     +P+   +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+S
Sbjct: 1   MAQFKPLFLGTVGKTEPMAALKRAADTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSAD 149
           FG YFK+ AI   W+LLTK + LD  RLY+T ++         D EA +LW    G+  D
Sbjct: 61  FGDYFKKEAIGWTWELLTKVYGLDPNRLYVTYFEGNEAMGLEPDLEAKQLWLDQ-GVPED 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209
            I+     DNFW M + GPCGPCSE+ +D+           +++    +EIWN VFMQ++
Sbjct: 120 HILPGNMKDNFWEMGDQGPCGPCSEVHYDKV-GGRNAAHLVNQDDPLVVEIWNNVFMQYD 178

Query: 210 QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV---------T 260
           +Q  +    LP   IDTG+G ER+ + LQ K++NYD D+F  L     +V          
Sbjct: 179 RQKDRSLKPLPAKHIDTGLGFERLVSALQHKSSNYDTDVFAPLFAKIVEVSGSRPYSDKY 238

Query: 261 GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YT 318
           G           RV+ DH+R  SF IADG +P N GRGYV+RR++RR + YAR       
Sbjct: 239 GKDDVDGVDTALRVVADHIRLLSFSIADGAVPGNIGRGYVVRRVLRRGVRYARKYLNANI 298

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
                 +LPAL  +MG  +PEL + +  I+E L  E+  F  TLDRG  + +   +   K
Sbjct: 299 GSFFSQILPALVEQMGEQFPELKKKEADIKEILDEEEVAFAVTLDRGEAMFEKYAAAATK 358

Query: 379 --DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
             ++ L+G   ++LYDT G P+D+ + +   RGL         + ++  + +AR  S  +
Sbjct: 359 AGEKKLSGADVWRLYDTFGFPVDLTKLMAEERGLTID-----EEEVKVAQEKAREASKAV 413

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
                             T F    +   S+   +                    ++ I 
Sbjct: 414 KEAV--------------TTFPKLTVHHISELENDRNIPRTDSEAKYSAQSSEGKIQLIF 459

Query: 497 QQGEIVEEAVS---GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
              E +E +        + ++ D+T FYAE+GGQ+ DTG  I D          ++  G 
Sbjct: 460 NGSEFIENSKDVPPKTPLGIILDKTNFYAESGGQVADTGRIIIDDEAEFKVLDTQEFGGY 519

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            VH   +E G L+    +    D   R+ +  NH+ TH+L+HAL  +LG  V+Q GS + 
Sbjct: 520 VVHSGFLEYGNLKAGDVVKCEFDELRRQPIRNNHTGTHVLNHALREVLGDTVNQAGSLVD 579

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKY 672
            D LRFD +H   +T  E+K IE+  N  I +NL V  + +   +A   +G  A+ G  Y
Sbjct: 580 QDKLRFDFSHKTQVTLPEIKRIEELSNADIRKNLKVYAKDVALSEAREINGLRAVFGETY 639

Query: 673 NDRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            D VRVVSV              +    S   CGGTHV +TG I  L IV ES I  GIR
Sbjct: 640 PDPVRVVSVGASVEEMLKDPKNPEWRQFSVEFCGGTHVDATGLIKDLIIVEESGIAKGIR 699

Query: 722 RIEAITG---QRARSHLMGQDEKLKSLA---------SFLKVSQGNVVGRV--------- 760
           RI A TG    +A+       ++L  +A         S +K +  ++   V         
Sbjct: 700 RIVAYTGAGAHQAQQDAKDFSDRLDHIAALEFGPEKVSLVKAASVDLDALVISVLTKEEL 759

Query: 761 --------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKS 811
                   + + +E +K Q   +   L    +  +  K  D   F+ H+    ++K +  
Sbjct: 760 RKKFATIQKSVLDEQKKRQKAESGTALSTVQKFFADEKNKDAKAFVGHLPISANAKAISE 819

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           VM   + K ++  + L   SK++     + V  DL     A        +++GG  GG  
Sbjct: 820 VMTYYKSKDKAKSVYLFAGSKDEAVVHGVYVGTDL-KGVTAEQWTAAVTEIIGGKTGGKE 878

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P   Q  G N  K D+A+     +L++
Sbjct: 879 PSR-QGAGSNPEKLDEAVTKAQQWLEE 904


>gi|297678244|ref|XP_002816983.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial-like
           [Pongo abelii]
          Length = 985

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 279/956 (29%), Positives = 430/956 (44%), Gaps = 92/956 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VG+   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 106 QKCVRAGGHHNDLEDVGQDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165

Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+++ +D D         E   +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 166 RLWVSYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D                 + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q            +  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P   G   VLRRI+RRA+ ++   L      +  L+P +   +G AYPEL +   
Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSVEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT--HGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +L  +G+          A EE + RAR        G    +W  +    G  Q  G    
Sbjct: 456 MLEEKGVQLDSAGLERLAQEEAQHRARQAEPVKKQG----LWLDVH-ALGELQRQG---- 506

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYA 522
                         Q           + V  +  + G  V     GQ+  ++ D+T FYA
Sbjct: 507 VPPTDDSPKYNYSLQPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566

Query: 523 EAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  D G         +     + +  G F+ H  V    L+    + L +D   R 
Sbjct: 567 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLQIGDQVQLHVDKAWRL 626

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ATHLL+ AL   LG    Q GS ++P+ LR DVT   P+T  +L+++E+ V +
Sbjct: 627 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLSPEQLRLDVTTQTPLTPEQLRAVENTVQE 686

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSS 691
            + Q+  V    +             L   Y D VRV          +    +     S 
Sbjct: 687 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASF 748
            LC GTH+  TG +  L I+ +  +  G  R+ AITG+   +AR       +++K+    
Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQSLAQEVKAATER 806

Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783
           L     +V   +                        E+    + LQ     A RKLQ+  
Sbjct: 807 LSQGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 866

Query: 784 EDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
                 ++    +    +   +S      L  V+  L ++  S  ++L+      K    
Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPVGKVLCA 926

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V +     F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 927 CQVAQGATPTFTAEAWALAVCSHIGGKAWGSR-VVAQGTGSTTD-LEAALSIARTY 980


>gi|258538952|ref|YP_003173451.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
 gi|257150628|emb|CAR89600.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
          Length = 710

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 265/731 (36%), Positives = 398/731 (54%), Gaps = 52/731 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++ VG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K FD
Sbjct: 64  TNAQKSIRT----NDIELVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K  G++ D I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 FDPKRLYVTVYPKDKGTKELWRK-VGVADDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           G+                E  RY+EIWN+VF +            P  +IDTGMGLER+ 
Sbjct: 176 GQSFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291
            V+Q     ++ DLF  +I+A+E+++  K       + V+ ++I DH R+ +F I DG L
Sbjct: 236 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGASAQDDVSFKIIADHARTVTFAIGDGAL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++ +
Sbjct: 296 PSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQPFIQKVI 355

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409
            SE+ RF +TLD G+ LL+ +++ L ++    ++G  AFKL+DT+G P+++  +     G
Sbjct: 356 ESEEARFRQTLDAGVNLLNQIVAELKQNGKKEISGADAFKLFDTYGFPVEMTNEYAEDEG 415

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  F + +  QR RAR       S  ++     L +    ++F G+  L      
Sbjct: 416 LK-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDTV--LMDITTPSKFTGWTELDHKH-- 470

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + ++AIV   ++ +E  +GQ  +++FD+TPFYAE GGQ+ 
Sbjct: 471 --------------------ATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYAEMGGQVA 509

Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G        +       + A      H +  +G L       L++D   R+++S+NH+
Sbjct: 510 DHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKGKLTKGQPYWLSVDRLRRKKVSLNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I   LP
Sbjct: 570 ATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVNQKIWDALP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +  + M   +A   GA A+ G KY D VR+VS+     G ++    GGTH ++T  + L 
Sbjct: 630 ITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPTNTNALGLF 684

Query: 709 YIVSESSIRAG 719
            I SES +  G
Sbjct: 685 KITSESVLAQG 695


>gi|74742244|sp|Q5JTZ9|SYAM_HUMAN RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor
 gi|57209007|emb|CAI40747.1| alanyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119624673|gb|EAX04268.1| alanyl-tRNA synthetase like [Homo sapiens]
          Length = 985

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 281/956 (29%), Positives = 431/956 (45%), Gaps = 92/956 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165

Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+I+ +D D         E   +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D                 + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q            +  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DGI P   G   VLRRI+RRA+ ++   L      +  L+P +   +G AYPEL +   
Sbjct: 336 SDGIFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT--HGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +L  +G+          A EE + RAR        G    +W  +    G  Q  G    
Sbjct: 456 MLEEKGVQLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVH-ALGELQRQG---- 506

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYA 522
                         +           + V  +  + G  V     GQ+  ++ D+T FYA
Sbjct: 507 VPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566

Query: 523 EAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  D G         +     + +  G F+ H  V    LR    + L +D   R 
Sbjct: 567 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRL 626

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T  +L+++E+ V +
Sbjct: 627 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQE 686

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSS 691
            + Q+  V    +             L   Y D VRV          +    +     S 
Sbjct: 687 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASF 748
            LC GTH+  TG +  L I+ +  +  G  R+ A+TG+   +AR       +++K+    
Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQEVKAATER 806

Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783
           L +   +V   +                        E+    + LQ     A RKLQ+  
Sbjct: 807 LSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 866

Query: 784 EDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
                 ++    +    +   +S      L  V+  L ++  S  ++L+      K    
Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCA 926

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V +  +  F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 927 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSIAQTY 980


>gi|38569417|ref|NP_065796.1| alanyl-tRNA synthetase, mitochondrial precursor [Homo sapiens]
 gi|124297995|gb|AAI31729.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|208967617|dbj|BAG72454.1| alanyl-tRNA synthetase 2, mitochondrial [synthetic construct]
          Length = 985

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 280/956 (29%), Positives = 431/956 (45%), Gaps = 92/956 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165

Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+I+ +D D         E   +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D                 + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q            +  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P   G   VLRRI+RRA+ ++   L      +  L+P +   +G AYPEL +   
Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT--HGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +L  +G+          A EE + RAR        G    +W  +    G  Q  G    
Sbjct: 456 MLEEKGVQLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVH-ALGELQRQG---- 506

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYA 522
                         +           + V  +  + G  V     GQ+  ++ D+T FYA
Sbjct: 507 VPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566

Query: 523 EAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  D G         +     + +  G F+ H  V    LR    + L +D   R 
Sbjct: 567 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRL 626

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T  +L+++E+ V +
Sbjct: 627 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQE 686

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSS 691
            + Q+  V    +             L   Y D VRV          +    +     S 
Sbjct: 687 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASF 748
            LC GTH+  TG +  L I+ +  +  G  R+ A+TG+   +AR       +++K+    
Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQEVKAATER 806

Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783
           L +   +V   +                        E+    + LQ     A RKLQ+  
Sbjct: 807 LSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 866

Query: 784 EDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
                 ++    +    +   +S      L  V+  L ++  S  ++L+      K    
Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCA 926

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V +  +  F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 927 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSIAQTY 980


>gi|6331226|dbj|BAA86584.1| KIAA1270 protein [Homo sapiens]
          Length = 986

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 280/956 (29%), Positives = 431/956 (45%), Gaps = 92/956 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 47  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 106

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 107 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 166

Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+I+ +D D         E   +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 167 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 225

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D                 + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 226 HYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 276

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q            +  EG     +RV+ DH+R+ S  I
Sbjct: 277 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 336

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P   G   VLRRI+RRA+ ++   L      +  L+P +   +G AYPEL +   
Sbjct: 337 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 396

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT--HGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 397 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 456

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +L  +G+          A EE + RAR        G    +W  +    G  Q  G    
Sbjct: 457 MLEEKGVQLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVH-ALGELQRQG---- 507

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYA 522
                         +           + V  +  + G  V     GQ+  ++ D+T FYA
Sbjct: 508 VPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 567

Query: 523 EAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  D G         +     + +  G F+ H  V    LR    + L +D   R 
Sbjct: 568 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRL 627

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T  +L+++E+ V +
Sbjct: 628 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQE 687

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSS 691
            + Q+  V    +             L   Y D VRV          +    +     S 
Sbjct: 688 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 747

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASF 748
            LC GTH+  TG +  L I+ +  +  G  R+ A+TG+   +AR       +++K+    
Sbjct: 748 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQEVKAATER 807

Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783
           L +   +V   +                        E+    + LQ     A RKLQ+  
Sbjct: 808 LSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 867

Query: 784 EDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
                 ++    +    +   +S      L  V+  L ++  S  ++L+      K    
Sbjct: 868 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCA 927

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V +  +  F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 928 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSIAQTY 981


>gi|114607605|ref|XP_518510.2| PREDICTED: alanyl-tRNA synthetase like [Pan troglodytes]
          Length = 985

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 282/956 (29%), Positives = 430/956 (44%), Gaps = 92/956 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165

Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+I+ +D D         E   +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D                 + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q            +  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DGI P   G   VLRRI+RRA+ ++   L      +  L+P +   +G AYPEL +   
Sbjct: 336 SDGIFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT--HGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +L  +G+          A EE + RAR        G    +W  +    G  Q  G    
Sbjct: 456 MLEEKGVQLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVH-ALGELQRQG---- 506

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYA 522
                         +           + V  +  + G  V     GQ+  ++ D+T FYA
Sbjct: 507 VPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566

Query: 523 EAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  D G         +     + +  G F+ H  V    LR    + L +D   R 
Sbjct: 567 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRL 626

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T  +L+++E+ V +
Sbjct: 627 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQE 686

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSS 691
            + Q+  V    +             L   Y D VRV          +    +     S 
Sbjct: 687 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASF 748
            LC GTH+  TG +  L I+ +  +  G  R+ AITG+   +AR       +++K+    
Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQSLAQEVKAATER 806

Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783
           L     +V   +                        E+    + LQ     A RKLQ+  
Sbjct: 807 LSQGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 866

Query: 784 EDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
                 ++    +    +   +S      L  V+  L ++  S  ++L+      K    
Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCA 926

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V +  +  F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 927 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSIAQTY 980


>gi|71895377|ref|NP_001026227.1| probable alanyl-tRNA synthetase, mitochondrial [Gallus gallus]
 gi|53136426|emb|CAG32542.1| hypothetical protein RCJMB04_28n18 [Gallus gallus]
          Length = 816

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 255/764 (33%), Positives = 376/764 (49%), Gaps = 42/764 (5%)

Query: 6   SIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----Q 59
            IR  FL FF+ K+GH  LPS+ + P  DPTL+F NSGM  FK +F G   P       +
Sbjct: 33  QIRAAFLRFFEEKHGHRCLPSAPVRPRGDPTLLFVNSGMNQFKPVFLGTAHPRSELAQQR 92

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKCVRAGGKHNDL++VGR   HHTFFEMLGN+SFG YFKE A  +AW+LLT+ + 
Sbjct: 93  RVVNSQKCVRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYFKEEACSMAWELLTEVYK 152

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           + + RLY+T +          DEE   +W  + G+ A+ ++     DNFW M +TGPCGP
Sbjct: 153 IPKDRLYVTYFGGDSSLGLNADEECRDVWLSL-GVPANHVLPFPMKDNFWEMGDTGPCGP 211

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           C+EI +D            ++     +EIWNLVFMQ+ ++       LP+  +DTGMGLE
Sbjct: 212 CTEIHYDHVGGGRNASALVNQGSPDVVEIWNLVFMQYSREVDGNLLPLPQHHVDTGMGLE 271

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSS 282
           R+ TVLQ K +NYD DLF  ++ A  +         + G    G+  + +RV+ DH+R+ 
Sbjct: 272 RLVTVLQNKRSNYDTDLFTPILDAIHKGCGGPRYQGLVGNADVGHVDMAYRVVADHVRTL 331

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341
              I DGI P   G   VLRRI+RRA+ +    L     L+  L+PA+   +G AYPEL 
Sbjct: 332 CVCITDGIYPGLSGAELVLRRILRRAVRFCAEVLHAPRGLLASLVPAVVEVLGDAYPELK 391

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    + +     +  F  +L+RG  +++  +  +        +VA+ LY   G PLD++
Sbjct: 392 KNADQVMDIFNENEVAFLSSLERGRRIIERTVQQMKPSADFPAEVAWSLYGNLGFPLDLI 451

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
             +L  +G   +D  +FN+ + E   R               +   +       +    D
Sbjct: 452 DLMLEEKG-IRLDSAAFNELVLEDAKRKAHGPQEGRQLEGTVVHLDVHSMAQLQR----D 506

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            +  +    +       +      +   + +  + +   + +E  +GQ   V+ D+T FY
Sbjct: 507 NIPATDDSPKY-SYKLGQHGQYEFSPCQATILMLYRDQSLQKEVGAGQHCGVILDRTNFY 565

Query: 522 AEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AE GGQ  D G  I      +       +  G +V H +     LR    + L +D   R
Sbjct: 566 AEQGGQASDRGYLIRLGQQDILFPVESVRLCGGYVIHEVTAVETLRAGDQVQLFVDEVQR 625

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                NH+ATHLL+ AL  +LG    Q GS +T + LRFD     P+T  +L+ +E  V 
Sbjct: 626 LACMTNHTATHLLNFALRHVLGDSTEQRGSHVTAEQLRFDFNIKGPVTVEQLQQVEQVVQ 685

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHS 690
           D+I +N  V    +    A        L   Y D VR+VS+            +     S
Sbjct: 686 DVIKRNEAVYMAEVPLALARRVQGLRALDEGYPDPVRIVSLGVPVETVLTSNSQAAMQTS 745

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
             LC GTH+  TG +  L IVSE  +  GI R+ A+TG++A+  
Sbjct: 746 VELCCGTHLLQTGAMEDLAIVSERQLVKGISRVIAVTGRQAKQA 789


>gi|109071333|ref|XP_001099647.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial [Macaca
           mulatta]
          Length = 985

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 277/956 (28%), Positives = 429/956 (44%), Gaps = 92/956 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + +   
Sbjct: 106 QKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYGIPTE 165

Query: 124 RLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+++ +        + D E   +W  + G+ A +++     +NFW M  TGPCGPC+EI
Sbjct: 166 RLWVSYFDGDPKAGLEPDLETRDIWLSL-GVPATRVLSFGPQENFWEMGNTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D                 + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQWHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q            +  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLHAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P   G   VLRRI+RRA+ ++   L      +  L+P +   +G AYPEL +   
Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+   L    GLPLD+++ 
Sbjct: 396 QISNLVLEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLSGDLGLPLDMVEL 455

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +L  +G+          A E  + +AR        G    +W  +    G  Q  G    
Sbjct: 456 MLEEKGVQLDSTGLERLAQEAAQHQARQAEPVQKQG----LWLDVH-ALGELQHQG---- 506

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYA 522
                         +           + V  +  + G  V     GQ+  ++ D+T FYA
Sbjct: 507 VPPTDSSPKYNYSLRPNGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566

Query: 523 EAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  D G  +  G   +     + +  G F+ H  V    L+    + L +D   R 
Sbjct: 567 EQGGQASDRGYLVRVGQEDVLFPVARAQVCGGFILHEAVAPECLQIGDQVQLHVDKAWRL 626

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ATHLL+ AL   LG    Q GS + P+ LR DVT    +T   L+++E+ V +
Sbjct: 627 ACMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTALTPERLRAVENTVQE 686

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSS 691
            + Q+ PV    +             L   Y D VRV          +    +     S 
Sbjct: 687 AVQQDKPVYMEEVPLALTAQVPGLRCLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASF 748
            LC GTH+  TG +  L I+ +  +  G  R+ AITG+   +AR       +++K+    
Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQNLAQEVKAATER 806

Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783
           L     +V   +                        E+    + LQ     A RKLQ+  
Sbjct: 807 LSQGSRDVAEALRLSKDIGRLIEAVETSVMPQWQRRELLATLKMLQRRANTAIRKLQMGQ 866

Query: 784 EDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
                 ++    +    +   +S      L  V+  L ++  S  ++L+      K    
Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQSMGKVLCA 926

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V +  +  F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 927 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSTARAY 980


>gi|301115782|ref|XP_002905620.1| alanyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
 gi|262110409|gb|EEY68461.1| alanyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
          Length = 897

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 313/918 (34%), Positives = 453/918 (49%), Gaps = 103/918 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58
            + +R+ FL+FF+  GH ++PS+SL+P   D +L+F N+GMVPFK  F G     +   Y
Sbjct: 24  STELRSRFLQFFESQGHRVVPSASLVPPGGDQSLLFVNAGMVPFKQAFLGIDGGAKARGY 83

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ Q+CVRAGGKHNDLD VG T RHHT FEMLGNFSFG YFKE+AI + W  LT+E 
Sbjct: 84  SRATSAQRCVRAGGKHNDLDQVGLTRRHHTMFEMLGNFSFGDYFKEQAITMCWRFLTQEL 143

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L   RL++TV   D+EA +LWK+I+GL   KI  +  +DNFW+M ++GPCGPCSE+F+D
Sbjct: 144 ELPIDRLHVTVLKSDQEARRLWKQIAGLPDHKIQELDEHDNFWAMGDSGPCGPCSEVFWD 203

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN-KQERFILPKMSIDTGMGLERMATVL 237
            G+ I       ++  ER++E+WNLVFMQF +     E   LP  S+DTGMGLER+A+VL
Sbjct: 204 LGDHI-------ADPDERFLELWNLVFMQFFRNEGDSELHALPNCSVDTGMGLERVASVL 256

Query: 238 QEKTNNYDIDLFKHLIQAS---------------------EQVTGMKY---EGNNIVNHR 273
           Q   +NY  D+F  L+                        E++   K     G  I   R
Sbjct: 257 QGVPSNYHTDVFVPLLTEVATVLDANRSSTLRQSFTSALQEELDPRKNLFGTGKEIQTLR 316

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM 333
           ++ DHLR++  L+ DG+ P+N GRGYVLRRI+RRA+ +A+ LG        L        
Sbjct: 317 IVSDHLRATYALLQDGVFPSNIGRGYVLRRIIRRAIRHAQQLGVRSGSDGILASIAVPGW 376

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393
             A          +   + +E+  F + L  G   ++   S      +L+G  AF+LYDT
Sbjct: 377 SEA-----AGLQQMRAIVANEERAFEEMLRNGRGAIEKAFSKT--QVMLSGADAFRLYDT 429

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
            G+PLDI Q +   +GL+ +D   ++   +  + +    S+     ++E+   S      
Sbjct: 430 FGIPLDITQVLAEEKGLS-VDTEGYDACRKSHKQQTSDRSVFHTQASSEQS-SSTPAATV 487

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            ++F+GY+ L  SK    D                                        V
Sbjct: 488 VSEFVGYEQLSVSKARVLDCWSGSGSAGFS-----------------------------V 518

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+ PFY E GGQ+GD G  I +        + K               +   E ++  
Sbjct: 519 ILDRCPFYPEGGGQVGDRGHLINEDAIAIKCTLPKDTTF------EDISALFLNEATVEA 572

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D + R   +++H+ATHLL  AL   LG HV+Q GS +T D LRFD  H   +++ E+ 
Sbjct: 573 HVDRRFRSGCAVHHTATHLLQRALKAELGEHVTQAGSQVTSDRLRFDFAHFGALSADEMA 632

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           S+E  VN   A  L V T  + REDA  SGA    G KY D VRVV V  E     SS  
Sbjct: 633 SVEARVNAFAAAELDVSTVELPREDAERSGAICNFGDKYGDVVRVVRVGGEAETPVSSEF 692

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHV++  EI    +VSE S+ AG RR+EA+ G     +L  + + L  +A  L  + 
Sbjct: 693 CGGTHVNNVREIFPFAMVSEGSVAAGTRRVEAVAGHAGARYLQAKAQTLSDVADQLSTTP 752

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKR---KLQLNVEDLSCHKIAD------VNFMSHIISEV 804
             VV RV ++ ++ ++L+            L    L+   I        V   +  +   
Sbjct: 753 AKVVERVAKMHKQMKQLESRVQALGDVLSTLPSTPLASGAIDGAITAPHVELHALNVPGG 812

Query: 805 D--SKELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
              SK LK   + L ++    S +++L+G          I    +   + +A  L +   
Sbjct: 813 GEFSKVLKRRAEFLAEQASPSSVLVVLLGCQ--------IACIANAEAKVHAGKLMQQVV 864

Query: 861 KVLGGGGGGGRPHMAQSG 878
           K L GG GGG    AQ  
Sbjct: 865 KSL-GGRGGGNASFAQGS 881


>gi|194039401|ref|XP_001929628.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial [Sus
           scrofa]
          Length = 985

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 277/951 (29%), Positives = 431/951 (45%), Gaps = 91/951 (9%)

Query: 4   VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
            +++R  FL FF+ ++GH L+PS+S+ P  DPTL+F N+GM  FK IF G   P      
Sbjct: 39  AAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPTLLFVNAGMNQFKPIFLGTVDPRSEMAG 98

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTK 116
           ++ V   QKCVRAGG+HNDL++VG+   HHTFFEMLGN++FGG YFKE A  +AW+LLT+
Sbjct: 99  FRRVANSQKCVRAGGRHNDLEDVGQDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ 158

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + + + RL+++ +  D         E+  +W  + G+ A +++     +NFW M +TGP
Sbjct: 159 VYGIPEDRLWVSYFGGDPKAGLGADLESRDIWLNL-GVPASRVLSFGPQENFWEMGDTGP 217

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D                 + +E+WNLVFMQ  ++       LP+  +DTGM
Sbjct: 218 CGPCTEIHYDL---------AGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGM 268

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHL 279
           GLER+  VLQ K + YD DLF  L+ A  Q  G              +    +RV+ DH+
Sbjct: 269 GLERLVAVLQGKHSTYDTDLFSPLLNAIHQGCGAPPYSGRVGAADEGHIDTAYRVVADHI 328

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338
           R+ S  IADG+ P   G   ++RRI+RRA+ ++   L      +  L+P +   +G AYP
Sbjct: 329 RTLSICIADGVSPGMSGAPLIVRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGGAYP 388

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGL 396
           EL +    I   +  ++  F  +L RG  +++  L  LG  ++   +VA+   L    GL
Sbjct: 389 ELHKNSAQIVSLVSEDEAAFLASLQRGRRIIERTLKRLGPSDVFPAEVAWSLSLSGNLGL 448

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+++ +L  +G+          A EE + RA+        G    +        G  Q
Sbjct: 449 PLDLVELMLEEKGVQLDSAGLARLAQEEAQHRAQQAEPVQEQGLRLDV-----HALGELQ 503

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVF 515
             G                  +       +   + V  +  + G  V     GQ+  ++ 
Sbjct: 504 RRG----VPPTDDSPKYSYSLRPSGGYEFSTCEARVLQLYAEDGRAVATTGEGQRYGLLL 559

Query: 516 DQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  D G     +   +     Q +  G F+ H +V    L+    + L 
Sbjct: 560 DRTNFYAEQGGQASDRGYLVRVEQQDVLFPVAQAQVCGGFILHEVVAPECLKVGDRVQLH 619

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   R      H+A HLL+ AL   LG    Q GS ++P+ LRFDV    P+T  +L++
Sbjct: 620 VDEAWRLSCMEKHTAAHLLNWALRKALGPSTEQRGSHLSPERLRFDVATQAPLTPKQLQA 679

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYE 684
           +ED V + + ++  V    +             L   Y D VRV          +    +
Sbjct: 680 VEDTVQEAVGRDEAVYMEEVALARTTHVPGLRSLDEVYPDPVRVVSVGVPVAHALEPASQ 739

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL---MGQDEK 741
                S  LC GTH+  TG I  L IV E  +  G  R+ AITG++AR          ++
Sbjct: 740 AALQTSVELCCGTHLLRTGAIGDLVIVGERQLAKGTTRLLAITGEQARQAREVGQSLAQE 799

Query: 742 LKSLASFLKVSQGNVVG--RVEE---------------------IWEEYRKLQLIH--AK 776
           +++ A  L     +VV   R+ +                     +    + LQ     A 
Sbjct: 800 VEAAAERLSRGSRDVVEAQRLSKDMGRLTDAVDTSVMPQWQRRELQATLKALQRRANTAI 859

Query: 777 RKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           RKL++    L   ++    ++   +   +S      L  V+  L K+  S  ++L+    
Sbjct: 860 RKLEMGQAVLKTQELLQRHSEGPLIVDTVSAESLSMLVKVVRQLCKQAPSTSVLLLSPQP 919

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
             +      V +     F A   A      +GG   G R  +AQ  G   +
Sbjct: 920 LGQVLCACQVAQSATPAFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTAD 969


>gi|308803402|ref|XP_003079014.1| SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (ISS)
            [Ostreococcus tauri]
 gi|116057467|emb|CAL51894.1| SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (ISS)
            [Ostreococcus tauri]
          Length = 1170

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 287/952 (30%), Positives = 442/952 (46%), Gaps = 108/952 (11%)

Query: 4    VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
               +R TF+ +F +K  H   PSS  +P +DPTL+F N+GM  +K IF G+  P      
Sbjct: 246  SKRVRDTFINYFIEKQNHTPWPSSPAVPVDDPTLLFANAGMNQYKPIFLGKADPKTALAK 305

Query: 58   YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLTK 
Sbjct: 306  LSRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTKV 365

Query: 118  FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + L + RLY T +  DE        EA  +W K   L   +++     DNFW M + GPC
Sbjct: 366  YCLPEDRLYATYFGGDESQGLEPDLEAKAIWLKY--LPESRVMPFGCADNFWEMGDVGPC 423

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPC+EI +D+           + +    +EIWN+VF+Q+               +DTGMG
Sbjct: 424  GPCTEIHYDRIGGRDASS-LVNMDDPNCLEIWNVVFIQY-------------THVDTGMG 469

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLR 280
             ER+ ++LQ K +NYD D+F  + +  +++T         G    G   + +RV+ DH+R
Sbjct: 470  FERLTSILQNKPSNYDTDVFMPIFKEIQRITGASPYTGLLGKSDVGEKDMAYRVVADHIR 529

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
            +    IADG  P ++GR YVLRR++RRA+ + R  LG  +     L+P +  ++G  +PE
Sbjct: 530  TLCIAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFAQLVPIVVKQLGYVFPE 589

Query: 340  LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397
            LI+ K  I E +  E+  FG+TL++G+     VL    K    +++G  AF L++++G P
Sbjct: 590  LIEKKKHIVEIIAEEETSFGRTLEKGIAQFKKVLDAATKEGRTVISGPEAFLLWESYGFP 649

Query: 398  LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
             D+++ +    G   +D   F +A  E + ++RA     G          L  +  AT  
Sbjct: 650  NDLVELMAEEVGFT-LDNEGFAKAFAEAQEKSRAGGKKSGG-------VQLLFEAEAT-- 699

Query: 458  IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFD 516
                         +       +         +S V AI+     V+     +     V +
Sbjct: 700  -------AWLQNNDVSTTNDSEKYAVGRPSHTSTVAAILTPSGFVKSTADAEGPYGFVLN 752

Query: 517  QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
             T FYAE+GGQ+ DTG        + + DV+  A   FV H     G +    +    +D
Sbjct: 753  STTFYAESGGQVADTGAISTPNGSVSVEDVKVAAG--FVLHTGEVSGTVSVGEAATCAVD 810

Query: 577  YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            Y+ R  +  NH+ TH+L++AL  + G  V Q GS +  + LRFD + +K +T+ ++  IE
Sbjct: 811  YERRENIMPNHTMTHVLNYALRKVAGDGVDQKGSLVDEEKLRFDFSLNKGLTTKQIADIE 870

Query: 637  DNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVE-----------YE 684
              VN+ I   L V  R +        +G  A+ G  Y D VRVVSV             E
Sbjct: 871  AVVNEQINAKLSVDKREVALAKAMTINGLRAVFGEVYPDPVRVVSVGPSIDELLADPINE 930

Query: 685  DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                +S   CGGTH+ +T       ++ E+ I  GIRRI A T   A+  +   +E + +
Sbjct: 931  KWVNYSIEFCGGTHLQTTDFAEQFVVLEETGISKGIRRITAATRGTAKKAIARANELMAT 990

Query: 745  LAS--------------FLKVSQ--------------GNVVGRVEEIWEEYRKLQLIHAK 776
            + +               LKV+                 +  +++ + E  ++       
Sbjct: 991  VKACDALSGEALNTELNVLKVAIDTGSMPTVAREQIREELNRQIKRLLEAAKEAAAAAKA 1050

Query: 777  RKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            + L    E  +  K A    F++ +  E D+  ++          + G+   +    + K
Sbjct: 1051 QALVDVQEKTAATKTAGAKYFVASLADETDAGAMREAATI---AFKEGVACTLFSKVKGK 1107

Query: 836  ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              V + V  D+            S   LGG GGGG+  +AQ  GPN      
Sbjct: 1108 EFVYVSVPPDVSIDVKG--WLAASCAPLGGKGGGGKNGVAQGQGPNVEAVGD 1157


>gi|225550618|ref|ZP_03771567.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379772|gb|EEH02134.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 906

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 273/945 (28%), Positives = 460/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEH 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKT 358

Query: 346 L--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           L  I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P+++++ 
Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSI----HNQELDKDITFKLVDTYGFPIELIK- 413

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
            +C +    +D+ +F+   +  +  ++A+   L    ++    SL +    + F  Y++ 
Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                        ++ +  +  +   + + +  +   VVFD T FYA 
Sbjct: 471 RWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH       +     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEYVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GA A     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAVAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741
            T EI  + IV  +S  AG  RI  +TG              +L             D K
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740

Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793
           L  L +       +S  +   +  +  E+ +     ++   K+  +  + D+        
Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFTELKQALINFKIEFDKQNAKQAIIDIKNTFNAQQ 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E     ++ N
Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATTNQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|188024171|ref|ZP_02996895.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518577|ref|ZP_03004033.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524540|ref|ZP_03004530.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198273661|ref|ZP_03206196.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225551130|ref|ZP_03772076.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|188018805|gb|EDU56845.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997839|gb|EDU66936.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659576|gb|EDX52956.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198249689|gb|EDY74470.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225378945|gb|EEH01310.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 906

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 273/945 (28%), Positives = 461/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEH 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKT 358

Query: 346 L--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           L  I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P+++++ 
Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSI----HNQELDKDITFKLVDTYGFPIELIK- 413

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
            +C +    +D+ +F+   +  +  ++A+   L    ++    SL +    + F  Y++ 
Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           +                        ++ +  +  +   + + +  +   VVFD T FYA 
Sbjct: 471 KWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH       +     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEYVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GAAA     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741
            T EI  + IV  +S  AG  RI  +TG              +L             D K
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740

Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793
           L  L +       +S  +   +  +  E+ +     ++   K+  +  + D+        
Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFTELKQTLINFKIEFDKQNAKQAIIDIKNTFNAQQ 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E     ++ N
Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATTNQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|195867853|ref|ZP_03079852.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|195660430|gb|EDX53688.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
          Length = 906

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 274/945 (28%), Positives = 461/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEH 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKT 358

Query: 346 L--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           L  I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P+++++ 
Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSI----HNQELDKDITFKLVDTYGFPIELIK- 413

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
            +C +    +D+ +F+   +  +  ++A+   L    ++    SL +    + F  Y++ 
Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                        ++ +  +  +   + + +  +   VVFD T FYA 
Sbjct: 471 RWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH       +     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEYVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GAAA     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741
            T EI  + IV  +S  AG  RI  +TG              +L             D K
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740

Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793
           L  L +       +S  +   +  +  E+ +     ++   K+  +  + D+        
Sbjct: 741 LNDLYNAFANWKNLSIEDYDLLNEKFTELKQTLINFKIEFDKQNAKQAIIDIKNTFNAQQ 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E     ++ N
Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATTNQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|145346253|ref|XP_001417607.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577834|gb|ABO95900.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 967

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 283/918 (30%), Positives = 427/918 (46%), Gaps = 97/918 (10%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
            S +R TF+ +F +K GH   PSS  +P NDPTL+F N+GM  +K IF G+  P      
Sbjct: 30  SSRVRDTFVNYFIEKQGHVNWPSSPAVPVNDPTLLFANAGMNQYKPIFLGKADPKTAFAK 89

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI +AWDLLT  
Sbjct: 90  LTRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGMAWDLLTNV 149

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L   RLY T +  DE        EA  +W K   L   +++     DNFW M + GPC
Sbjct: 150 YGLAPDRLYATYFGGDESQGLQPDLEAKAIWLKY--LPESRVMPFGCADNFWEMGDVGPC 207

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D+           + +    +EIWN+VF+Q+ ++       LP   +DTGMG
Sbjct: 208 GPCTEIHYDRI-GGRDAASLVNMDDPNCLEIWNVVFIQYNREEGGVLKSLPSKHVDTGMG 266

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLR 280
            ER+ ++LQ K +NYD D+F  + +  ++++         G +  G   + +RV+ DH+R
Sbjct: 267 FERLTSILQNKMSNYDTDVFMPIFKEIQRISGAAPYTGLLGKEDVGEKDMAYRVVADHIR 326

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  IADG  P ++GR YVLRR++RRA+ + R  LG  +     L+P L  ++G+ +PE
Sbjct: 327 TLSIAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFHKLVPCLIQQLGAVFPE 386

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           L+  +  I E +  E+E FG+TL +G+     VL  +      +++G  AF L++++G P
Sbjct: 387 LVAKQTHITEIIADEEESFGRTLQKGIDQFGKVLAAAKQEGRTVISGPEAFLLWESYGFP 446

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
            D+ + +    G   +D   F QA  E + ++RA     G          L  +  AT  
Sbjct: 447 NDLTELMAEENGFT-LDNEGFAQAFAEAQEKSRAGGKKSGG-------VQLLFEAEAT-- 496

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFD 516
                               ++        + S V AI+     ++     +       D
Sbjct: 497 -------AWLQNNGVAITKDEEKYASGRPTLESTVTAIMSPSGFIKSTSDAEGPYGFFMD 549

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            T FYAE+GGQ+ D+G        + ++DV  K    +V H     G +    +    +D
Sbjct: 550 ATTFYAESGGQVCDSGLITTPSGSMSVSDV--KVAAAYVMHTGDVSGTVSVGDAAKCAVD 607

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           Y  R  +  NH+ TH+L++AL  ++G  V Q GS +  + LRFD +H+K  T+ ++  IE
Sbjct: 608 YDRRDNIMPNHTMTHVLNYALRKVMGDGVDQKGSLVDEEKLRFDFSHNKGATTKQIAEIE 667

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YE 684
             VN+ I   L V  R +  + A+  +G  A+ G  Y D VRVVSV             +
Sbjct: 668 AIVNEQIKSKLAVDKREVALDKAMTINGLRAVFGEVYPDPVRVVSVGPSIDDLLANPSDD 727

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ----------RARSH 734
               +S   CGGTH++ST       I+ ES I  GIRRI   T +             + 
Sbjct: 728 KWKNYSIEFCGGTHLASTDFAEQFVILEESGIAKGIRRITGATREGAKAALARAADVLAL 787

Query: 735 LMGQ-----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN------- 782
           +        +   K L     V    V+  ++   EE R       KR L          
Sbjct: 788 VKSCDSLSGEALDKQLGVLKNVVDTEVLPVIQR--EEIRAAVTSQVKRVLDAQKEAAAAA 845

Query: 783 --------VEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
                    E  +  K A    F++ +    D+  +K            GI   +  + +
Sbjct: 846 KAQAIVDVQEKTAATKSAGAKYFVATLADGTDAGAMKEAAAV---AFAEGIACTLLANCK 902

Query: 834 KKASVLIVVTEDLLDRFN 851
            K  V   V  D+     
Sbjct: 903 GKEFVYCSVPPDVGIDVK 920


>gi|254470073|ref|ZP_05083477.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211960384|gb|EEA95580.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 551

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 309/560 (55%), Positives = 398/560 (71%), Gaps = 26/560 (4%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GMVPFKN+FTG EK  Y   T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMVPFKNVFTGLEKRDYVRATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156
           SFG YFKE AI+LAW+L+TKE+ L   +L +TVY ED+EAF +WKK++G + +KIIRI T
Sbjct: 61  SFGDYFKENAIELAWNLITKEYGLPADKLLVTVYSEDDEAFNIWKKLTGFADEKIIRIPT 120

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQE 215
           +DNFW+M +TGPCGPCSEIF+D GE I GG PGS  E+G+R+IEIWNLVFMQ+EQ   + 
Sbjct: 121 SDNFWAMGDTGPCGPCSEIFYDHGEQIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLADK- 179

Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVI 275
           R  LP+ SIDTGMGLER A ++Q   NNY+IDLFK LI +SE +TG++  G    +HRVI
Sbjct: 180 RIDLPRPSIDTGMGLERFAAIMQGVHNNYEIDLFKALIASSEHLTGVEAAGKAQASHRVI 239

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS 335
            DHLRS +FLIADG+LP+NEGRGYVLRRIMRRAM +A LLG  EP++  +LP L  EMG 
Sbjct: 240 ADHLRSMAFLIADGVLPSNEGRGYVLRRIMRRAMRHANLLGAKEPVIFKMLPTLVREMGQ 299

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PEL +A+ LIEET++ E++RF KTL+RGL LL+   S LG  + L+G+ AFKLYDT+G
Sbjct: 300 AFPELPRAEKLIEETIQLEEKRFIKTLERGLGLLEDATSSLGSGDQLDGETAFKLYDTYG 359

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ QD L       +D   FN A+E QR+ ARA   G G   T+ IWFS+KE+ GAT
Sbjct: 360 FPLDLTQDALR-NREIAVDTDGFNTAMERQRAEARAAWAGSGDAATDAIWFSIKEQAGAT 418

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +F+GY+                       T     +V ++V+ GE V+    G++  ++ 
Sbjct: 419 EFLGYE-----------------------TEKAEGVVLSLVKDGEEVKVLKQGEEGSLIL 455

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +QTPFY E+GGQ+GD G  + DG+ + +T+ QKKA+G+FVH   VE G +  + +L L +
Sbjct: 456 NQTPFYGESGGQVGDCGTMVADGVSITVTNTQKKADGLFVHSVRVESGDVNVDDALELIV 515

Query: 576 DYQNRRQLSINHSATHLLHH 595
           D+  R  +  NHSATHL+H 
Sbjct: 516 DHARRSAIRSNHSATHLVHE 535


>gi|171920911|ref|ZP_02932062.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209554598|ref|YP_002284771.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|171903130|gb|EDT49419.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209542099|gb|ACI60328.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
          Length = 906

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 273/945 (28%), Positives = 461/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEH 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKT 358

Query: 346 L--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           L  I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P+++++ 
Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSI----HNQELDKDITFKLVDTYGFPIELIK- 413

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
            +C +    +D+ +F+   +  +  ++A+   L    ++    SL +    + F  Y++ 
Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           +                        ++ +  +  +   + + +  +   VVFD T FYA 
Sbjct: 471 KWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH       +     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEYVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GAAA     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741
            T EI  + IV  +S  AG  RI  +TG              +L             D K
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740

Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793
           L  L +       +S  +   +  +  E+ +     ++   K+  +  + D+        
Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFTELKQALINFKIEFDKQNAKQAIIDIKNTFNAQQ 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E     ++ N
Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATTNQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|261219548|ref|ZP_05933829.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|260924637|gb|EEX91205.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
          Length = 723

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 365/731 (49%), Positives = 490/731 (67%), Gaps = 36/731 (4%)

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPK 221
           M +TGPCGPCSEIF+D G+ I GG PGS E +G+R+IEIWNLVFMQFEQQ  + R  LP+
Sbjct: 1   MGDTGPCGPCSEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPR 60

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281
            SIDTGMGLER+A VLQ   +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+
Sbjct: 61  PSIDTGMGLERIAAVLQGVHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRA 120

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           SSFLIADG+LP+NEGRGYVLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI
Sbjct: 121 SSFLIADGVLPSNEGRGYVLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELI 180

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +A+ LI ETL+ E+ RF KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ 
Sbjct: 181 RAESLISETLKLEETRFRKTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLT 240

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           QD L  RG   +D   FN A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+
Sbjct: 241 QDALRQRG-IAVDTEGFNVAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE 299

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T     ++ ++V+    V     G+ + VV +QTPFY
Sbjct: 300 -----------------------TESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFY 336

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            E+GGQ GDTG   G+G  + + D QKK EG+FVH   V  G  +    + L +D   R 
Sbjct: 337 GESGGQQGDTGTISGEGFVIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRT 396

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NHSATHLLH AL   LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+
Sbjct: 397 RIRSNHSATHLLHEALRETLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANE 456

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGG 696
           II QN PV TR+M  +DAIA GA AL G KY D VRVVS+       + G  +S  LCGG
Sbjct: 457 IILQNAPVTTRLMAVDDAIAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGG 516

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV  TG+I L+ I+SE  + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V
Sbjct: 517 THVRQTGDIGLVRIISEGGVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADV 576

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELK 810
           + RV  + +E +KL+   A  + +L +         +   +  VNF+  I++ V  ++LK
Sbjct: 577 LDRVNALIDERKKLERELADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLK 636

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
            + D  +K++ SG+++ +G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGG
Sbjct: 637 PLADEGKKQVGSGVVLFIGVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGG 696

Query: 871 RPHMAQSGGPN 881
           RP MAQ+GGP+
Sbjct: 697 RPDMAQAGGPD 707


>gi|185178972|ref|ZP_02964729.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|184209253|gb|EDU06296.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
          Length = 906

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 272/945 (28%), Positives = 460/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEH 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + M   Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMSDFYTYLKDEKT 358

Query: 346 L--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           L  I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P+++++ 
Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSI----HNQELDKDITFKLVDTYGFPIELIK- 413

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
            +C +    +D+ +F+   +  +  ++A+   L    ++    SL +    + F  Y++ 
Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           +                        ++ +  +  +   + + +  +   VVFD T FYA 
Sbjct: 471 KWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH       +     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEYVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GAAA     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741
            T EI  + IV  +S  AG  RI  +TG              +L             D K
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740

Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793
           L  L +       +S  +   +  +  E+ +     ++   K+  +  + D+        
Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFTELKQTLINFKIEFDKQNAKQAIIDIKNTFNAQQ 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E     ++ N
Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATTNQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|47937910|gb|AAH71378.1| Aars protein [Danio rerio]
          Length = 757

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 264/758 (34%), Positives = 392/758 (51%), Gaps = 60/758 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++           G +      + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G PLD
Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGFPLD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+ G+D+++F +    ++  A+  S G GSG  + I   +           
Sbjct: 424 LTALIAEERGM-GVDLLAFEE----EKKAAQLKSQGKGSGDEDHIMLDIYAI-------- 470

Query: 460 YDLLRGSKFMKED----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            D LR       D     K                 V A+ ++   V+E ++GQ+  V+ 
Sbjct: 471 -DELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLL 529

Query: 516 DQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           D+T FYAE GGQ  D G  +        R++ T    +  G +V H     G L+    L
Sbjct: 530 DKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVGDRL 589

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E
Sbjct: 590 TLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDE 648

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-------- 682
           ++  E+    +IA    V              G  A+    Y D VRVVS+         
Sbjct: 649 VRRTEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLA 708

Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                 G + S   CGGTH+ ++       IVSE +I 
Sbjct: 709 DPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIA 746


>gi|255727014|ref|XP_002548433.1| alanyl-tRNA synthetase [Candida tropicalis MYA-3404]
 gi|240134357|gb|EER33912.1| alanyl-tRNA synthetase [Candida tropicalis MYA-3404]
          Length = 700

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 239/693 (34%), Positives = 352/693 (50%), Gaps = 47/693 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + +R+TFL++F++N H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 26  TAAKVRSTFLDYFKQNKHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFAT 85

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK 
Sbjct: 86  LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDFSWELLTKV 145

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T +  DE        EA + W K  G+  D I+  +  DNFW M + GPC
Sbjct: 146 YGLPEDRLYVTYFGGDEKQGLEPDLEAKEFWLK-VGVPEDHILPGSVKDNFWEMGDQGPC 204

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI FD+           + +    IE+WN+VF+QF ++       LP   IDTGMG
Sbjct: 205 GPCSEIHFDRI-GGRNASDLVNMDDPNVIEVWNVVFIQFNREADGNLRSLPNKHIDTGMG 263

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ+K++NYD D+F  +     ++TG++                 +RVI DH+R
Sbjct: 264 FERLVSILQDKSSNYDTDVFLPIFDKIREITGVRPYTGKFGSEDKDGIDTAYRVIADHVR 323

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F I DG +P NEGRGYVLRRI+RR   Y R             L+  +  +    +P
Sbjct: 324 TLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFP 383

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+      ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G 
Sbjct: 384 EIASGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 443

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F +A EE R  ++ +    G    +    +L E      
Sbjct: 444 PVDLTRLMAEEAGLK-IDEPGFERAKEESREASKGNGTKDGKTLVKLDVHALSE------ 496

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515
                        K D            T  V + V  I    + V+       +  ++ 
Sbjct: 497 -----------LDKNDAIPKTNDEFKYGTENVKATVVGIYDGSKFVDSIEDSSVQCGILL 545

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+TPFYAE GGQ  DTG  + DG         +   G  +H   +  G L     ++ T 
Sbjct: 546 DKTPFYAEQGGQEYDTGKIVIDGKSEFNVSNVQVYAGYVLHTGNILEGKLSVGDEIIATY 605

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H + ++  EL+ +
Sbjct: 606 DELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQALSPKELEKV 665

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           E   N  I  N  V  + +    A         
Sbjct: 666 EAISNKYIKNNDKVFYKDVALAQAKEITGFESC 698


>gi|255587004|ref|XP_002534095.1| alanyl-tRNA synthetase, putative [Ricinus communis]
 gi|223525858|gb|EEF28289.1| alanyl-tRNA synthetase, putative [Ricinus communis]
          Length = 815

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 278/839 (33%), Positives = 434/839 (51%), Gaps = 67/839 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151
           MLGNFSFG YFK+ AI+ AW+L TKEF L   RL+++VY +D+EAF++W    G+  ++I
Sbjct: 1   MLGNFSFGDYFKKEAIKWAWELSTKEFGLAADRLWVSVYKDDDEAFEIWHNEVGVPTERI 60

Query: 152 IRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
            ++   DNFW+   TGPCGPCSE+++D      G L     +  R+IE +NLVFMQ+ + 
Sbjct: 61  KKMGEEDNFWTSGITGPCGPCSELYYDFHPE-RGFLDVDLGDDTRFIEFYNLVFMQYNKM 119

Query: 212 NKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN 271
           +      L + +IDTG+GLER+A +LQ+  NNY+ DL   +I+   ++  + Y   +   
Sbjct: 120 DDGSLESLKQKNIDTGLGLERLARILQKVPNNYETDLIYPIIEKVSELANLSYSVADDQT 179

Query: 272 ---HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-------- 320
               ++I DHLR+  FLI+DG+LP+N GRGYV+RR++RR +   RLLG            
Sbjct: 180 KTKLKIIGDHLRAIVFLISDGVLPSNIGRGYVVRRLIRRVVRTGRLLGIKGDGKGNLDGA 239

Query: 321 LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS------ 374
            +  +   +         ++      I E L+ E+ RF +TL+RG  LLD +L       
Sbjct: 240 FIPAIAEKVIELSVHIDSDVKARASRILEELQREEFRFVQTLERGEKLLDQMLEDALSSG 299

Query: 375 -HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
              G    L+G   F LYDT+G P++I  ++    G+  ID+  F+  +E+QR +++A  
Sbjct: 300 QKKGVIPCLSGKDVFLLYDTYGFPVEITTEVAEEHGVK-IDMDGFDIEMEKQRRQSQAAH 358

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
             +     +     L E    T+F+GYD L                          +++ 
Sbjct: 359 NVIKLTVEDG--GDLSENVSDTEFLGYDTL-----------------------SARAVID 393

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR------LQITDVQ 547
           +++  G+ V +   G +VE++ ++TPFYAE+GGQ+GD G              ++I DVQ
Sbjct: 394 SLLVNGKPVIQVPEGSEVEILLNKTPFYAESGGQIGDHGFLYVTEGESKPRAIVEIKDVQ 453

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           K    +FVH   +  G+L     +   +D + R++  ++H+ATHLL  AL  ++G   SQ
Sbjct: 454 KSLGNVFVHKGTIREGLLEVGREVEAAVDPKLRQRAKVHHTATHLLQSALKKVIGQETSQ 513

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
            GS +  D LRFD    +P+   EL+ IE  +N  I     + T++M+  DA  +GA A+
Sbjct: 514 AGSLVAFDRLRFDFNFHRPLLDTELEEIEALINGWIGDATLLQTKVMSITDAKNAGAIAM 573

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G KY ++VRVV V        S  LCGGTHVS+T EI    I+SE  I +GIRRIEA+ 
Sbjct: 574 FGEKYGEQVRVVEVPG-----VSMELCGGTHVSNTSEIRAFKIISEQGIASGIRRIEAVA 628

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV---- 783
           G+    ++  +D ++  L S LKV    V  RVE + EE R  +   +  + +  V    
Sbjct: 629 GEAFIEYINARDSQITRLCSTLKVKAEEVTTRVENLLEELRIARNEVSAMRSKAAVYKAS 688

Query: 784 ----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASV 838
               + +S      +  +   + ++D+  LKS  + L   +     ++L     E K S+
Sbjct: 689 TMASKAVSVGTSKSIRVLVESMDDIDADSLKSAAEYLIDALGDPAAVVLGSYPDEGKVSL 748

Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +   T  +++    A       AK+ GGGG GGRP+ AQ+GG        A+    + L
Sbjct: 749 VAAFTPGVVNLGVQAGKFIGPIAKLCGGGG-GGRPNFAQAGGRKPGNLPSALEKAHADL 806


>gi|284931130|gb|ADC31068.1| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. F]
          Length = 902

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 261/935 (27%), Positives = 436/935 (46%), Gaps = 96/935 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  +L+FF+   HE++ S SL+P NDP+L++ N+G+   K  F+G+E P+   + 
Sbjct: 6   SGSQIRQIWLDFFKSKKHEIIESKSLVPINDPSLLWINAGVATLKKYFSGEENPINPRLA 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q+C+RA    ND++NVG T+RHHT FEMLGNFS G YFK+ AI+  ++LLTK + L++
Sbjct: 66  NSQRCIRA----NDIENVGVTSRHHTVFEMLGNFSIGDYFKKEAIEFGYELLTKFYGLNK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LYIT+Y++D +AF  W    G+    IIR     NFW +  +GPCGP +EI++D+GE 
Sbjct: 122 DKLYITIYEDDNDAFNYWVDQ-GIDPHHIIRCDKKRNFWDLG-SGPCGPSTEIYYDRGEK 179

Query: 183 IPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                          E +RYIE+WN+VF QF          L + +IDTG  LER A +L
Sbjct: 180 YDPNKLGEKLFFEDIENDRYIEVWNIVFSQFNNTGNNNYTELVRKNIDTGASLERFACIL 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLI 286
           Q+   NYD DL+  +I+  E+ T  KY  ++  +            RVI DHL+   F I
Sbjct: 240 QDVPTNYDTDLYLPIIRTIEKHTNHKYVVDHYFSKDQSEQDVLRAFRVIADHLKCGVFAI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+LP  + R Y++R+++RRA  YA+ L      ++  +  +       +  LI  K +
Sbjct: 300 ADGVLPGAKDRDYIIRKLLRRAFVYAKKLNAKPEYLVETINVIINTYSDFFKYLIPNKEI 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + + +E   F KTLD G  + +           +  ++ FKL +T+G PLD+++++  
Sbjct: 360 VIQAITNEANNFTKTLDYGFEIFNE----AKTTNNITAEMIFKLVETYGFPLDLIKELSA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D+  F +  ++ +  ++A++  +G     +   +L +    ++F  YD     
Sbjct: 416 EAKIK-LDLDGFEELFKKHQEISKANNGEVGLKKQNE---NLLKFETQSKF-YYD----- 465

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              N + + V AI       V++   G     VF+ TP YA +G
Sbjct: 466 ------------------KNNIKTKVVAIFDDKFNPVDQIEVG-SGWAVFESTPIYATSG 506

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G  +  G  +   D   KA      H   ++        + L  D   R+ +  
Sbjct: 507 GQRFDEGYCLKKGNLVVHFDNVIKAPNKQHLH-HFKKASFWLNEKVELMHDENWRKLVRK 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHS  H+LH  L   +   + Q+G+  +      D  +   +T  +L  IE  +  +IA 
Sbjct: 566 NHSLEHILHATLKNTINETIKQSGAFKSAAKATLDFNYPTKLTDEDLDKIETKMRQVIAD 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV    ++ E +    A A    +Y     +  ++    G +S  LCGGTHV +T EI
Sbjct: 626 KIPVTVHHVDYETSQKMNAIAYFEEEYKKHELLRVIK---IGDYSVELCGGTHVDNTKEI 682

Query: 706 MLLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKSLASF---------------- 748
              +I    S+ AG  RIE I+      ++L+ +  ++K   +                 
Sbjct: 683 EECFITDLYSLGAGRWRIEIISSYETIYNYLVDKQNEIKQEKNHMFNELGNYDLTHYLDF 742

Query: 749 --------LKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV--N 795
                   L  S  ++   +   E+I EEY+ ++L   K+K +     +    + ++   
Sbjct: 743 SKKLHSFNLPTSIKDLRKTLRAFEQIKEEYKAIKLELDKKKTKDRANQIKKLALDNLEHK 802

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            +     + + K L      L  +    +   +  S + K + LI + ++  D+ NA  L
Sbjct: 803 IVLLFFDKEEHKALSIAHSELVNEKPDHLFFFINKS-DNKINYLIGI-KNATDKLNAKLL 860

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGG---PNGNKADQ 887
                 V+ G  GGG+ + AQ G     +  K   
Sbjct: 861 IDKV-NVMFGAKGGGKQNFAQGGFSTDKDVGKLKA 894


>gi|289448204|ref|ZP_06437948.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase alaS [Mycobacterium
           tuberculosis CPHL_A]
 gi|289421162|gb|EFD18363.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase alaS [Mycobacterium
           tuberculosis CPHL_A]
          Length = 828

 Score =  589 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 288/851 (33%), Positives = 432/851 (50%), Gaps = 70/851 (8%)

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAF 137
           T R   FF+M  NFSFG YFK  AI+LAW LLT       + LD  R++ TVY +D+EA 
Sbjct: 4   TTR---FFQMGRNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAV 60

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197
           +LW++++GL A++I R    DN+WSM   GPCGP SEI++D+G            E  RY
Sbjct: 61  RLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED-RY 119

Query: 198 IEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           +E+WNLVFMQ E+     +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + 
Sbjct: 120 LEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRP 179

Query: 252 LIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           ++    +V    Y      + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR 
Sbjct: 180 VLDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRV 239

Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368
           +  A+LLG    ++  L+  +   MG +YPEL+     I     +E+  F +TL  G  L
Sbjct: 240 IRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRL 299

Query: 369 LDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            + V S        +L+G  AF L+DT+G P+++  ++    GL  +D I F + + EQR
Sbjct: 300 FEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQR 358

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
            RA+A +        +   +      GAT+F G+D LR                      
Sbjct: 359 RRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS--------------------- 397

Query: 487 GVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-- 536
              + +  I   G+ V          A  GQ+VE+V D+TP YAE+GGQ+ D G   G  
Sbjct: 398 --QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTG 455

Query: 537 --DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +  R  +TDVQK A+ ++VH   VE G      +++  +D   RR  +  HS TH++H
Sbjct: 456 SSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVH 515

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG +  Q GS   P  LRFD     P+T  +   +E+  N+ +  +  V T   
Sbjct: 516 AALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTE 575

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             + A A GA AL G  Y D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ES
Sbjct: 576 QLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGES 631

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           SI +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + E  R  +   
Sbjct: 632 SIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKEL 691

Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS--GIIM 826
            + ++               +I +V  ++  +S  + + +L+S++  ++ K+ S   ++ 
Sbjct: 692 ERVRMASVRAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVA 751

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L+   + +     +       D    A DL +  A  +  G GGG+  +AQ  G N    
Sbjct: 752 LIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGI 810

Query: 886 DQAIAGVASFL 896
           D A+  V S +
Sbjct: 811 DAALDAVRSEI 821


>gi|52630311|ref|NP_941010.2| alanyl-tRNA synthetase, mitochondrial precursor [Mus musculus]
 gi|115502845|sp|Q14CH7|SYAM_MOUSE RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor
 gi|109730201|gb|AAI13780.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus]
 gi|109730687|gb|AAI13173.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus]
          Length = 980

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 274/964 (28%), Positives = 432/964 (44%), Gaps = 96/964 (9%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+++ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 35  AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ 
Sbjct: 95  RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 154

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +  D         E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 155 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 213

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D                 + +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 214 GPCTEIHYDL---------AGGVGSPQLVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 264

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q  G                   +RV+ DH+R
Sbjct: 265 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 324

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+   L      +  L+P +   +GSAYPE
Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 384

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLP 397
           L +  + I   +  ++  F  +L RG  ++D  +  LG  ++   +VA+   L    G+P
Sbjct: 385 LEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 444

Query: 398 LDIMQDILCARGLAGID--IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
           LD+++ +L  +G+      +    Q   + R++                   L  +   T
Sbjct: 445 LDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVHALEELHRQGIPT 504

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVV 514
                                             + V  +  + G  V    +GQ+  ++
Sbjct: 505 -----------TDDSPKYNYTLHPNGDYEFGLCEARVLQLYSETGTAVASVGAGQRCGLL 553

Query: 515 FDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE GGQ  D G         +       +  G F+ H  +    L+    + L
Sbjct: 554 LDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEAMAPERLQVGDQVQL 613

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   R    + H+ATHLL  AL   LG    Q GS + P+ LRFDV     +T+ +L+
Sbjct: 614 YVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRFDVATQTLLTTEQLR 673

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----------VEY 683
           ++E  V +++ Q+ PV    +             L   Y D VRVVS             
Sbjct: 674 TVESYVQEVVGQDKPVFMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAHALGPAS 733

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDE 740
           +     S  LC GTH+ STG +  L I+ E  +  GI R+ AITG+   +AR       +
Sbjct: 734 QAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQSLSQ 793

Query: 741 KLKSLASFLKVSQGNVVG--RV---------------------EEIWEEYRKLQLIH--A 775
           ++++ +  L     ++    R+                     +E+    + LQ     A
Sbjct: 794 EVEAASERLSQGSRDLPEAHRLSKDIGRLTEVAESAVIPQWQRQELQTTLKMLQRRANTA 853

Query: 776 KRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            RKL+         ++    ++   +   +S      L  V+  L K+  S  ++L+   
Sbjct: 854 IRKLEKGQATEKSQELLKRHSEGPLIVDTVSAESLSVLVKVVRQLCKQAPSISVLLLSPQ 913

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
                     V +D    F A   A      +GG   G R  +AQ  G +    + A+  
Sbjct: 914 PTGSVLCACQVAQDATPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTG-HTADLEAALGT 971

Query: 892 VASF 895
             ++
Sbjct: 972 ARAY 975


>gi|51260239|gb|AAH79844.1| Aars2 protein [Mus musculus]
          Length = 975

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 274/964 (28%), Positives = 432/964 (44%), Gaps = 96/964 (9%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+++ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 30  AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 89

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ 
Sbjct: 90  RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 149

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +  D         E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 150 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 208

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D                 + +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 209 GPCTEIHYDL---------AGGVGSPQLVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 259

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q  G                   +RV+ DH+R
Sbjct: 260 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 319

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+   L      +  L+P +   +GSAYPE
Sbjct: 320 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 379

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLP 397
           L +  + I   +  ++  F  +L RG  ++D  +  LG  ++   +VA+   L    G+P
Sbjct: 380 LEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 439

Query: 398 LDIMQDILCARGLAGID--IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
           LD+++ +L  +G+      +    Q   + R++                   L  +   T
Sbjct: 440 LDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVHALEELHRQGIPT 499

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVV 514
                                             + V  +  + G  V    +GQ+  ++
Sbjct: 500 -----------TDDSPKYNYTLHPNGDYEFGLCEARVLQLYSETGTAVASVGAGQRCGLL 548

Query: 515 FDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE GGQ  D G         +       +  G F+ H  +    L+    + L
Sbjct: 549 LDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEAMAPERLQVGDQVQL 608

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   R    + H+ATHLL  AL   LG    Q GS + P+ LRFDV     +T+ +L+
Sbjct: 609 YVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRFDVATQTLLTTEQLR 668

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----------VEY 683
           ++E  V +++ Q+ PV    +             L   Y D VRVVS             
Sbjct: 669 TVESYVQEVVGQDKPVFMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAHALGPAS 728

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDE 740
           +     S  LC GTH+ STG +  L I+ E  +  GI R+ AITG+   +AR       +
Sbjct: 729 QAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQSLSQ 788

Query: 741 KLKSLASFLKVSQGNVVG--RV---------------------EEIWEEYRKLQLIH--A 775
           ++++ +  L     ++    R+                     +E+    + LQ     A
Sbjct: 789 EVEAASERLSQGSRDLPEAHRLSKDIGRLTEVAESAVIPQWQRQELQTTLKMLQRRANTA 848

Query: 776 KRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            RKL+         ++    ++   +   +S      L  V+  L K+  S  ++L+   
Sbjct: 849 IRKLEKGQATEKSQELLKRHSEGPLIVDTVSAESLSVLVKVVRQLCKQAPSISVLLLSPQ 908

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
                     V +D    F A   A      +GG   G R  +AQ  G +    + A+  
Sbjct: 909 PTGSVLCACQVAQDATPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTG-HTADLEAALGT 966

Query: 892 VASF 895
             ++
Sbjct: 967 ARAY 970


>gi|156101531|ref|XP_001616459.1| alanyl-tRNA synthetase [Plasmodium vivax SaI-1]
 gi|148805333|gb|EDL46732.1| alanyl-tRNA synthetase, putative [Plasmodium vivax]
          Length = 1197

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 266/978 (27%), Positives = 444/978 (45%), Gaps = 129/978 (13%)

Query: 5    SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----Q 59
              +R  F+ +F++  H ++ S+S+IP ND TL+FTN+GM  FK IF GQ          +
Sbjct: 211  EEVRGGFINYFKEKNHTVVESASVIPYNDNTLLFTNAGMNQFKKIFLGQVDKSSDLGKLK 270

Query: 60   AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I  AWDLLT  + 
Sbjct: 271  RAVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIDYAWDLLTNVYK 330

Query: 120  LDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +D  RLY+T +          ED E  K+W K   +   +I+     +NFW MA+TGPCG
Sbjct: 331  IDPNRLYVTYFGGDEKLASCPEDLETKKIWLKY--VDESRILPFGMKENFWEMADTGPCG 388

Query: 171  PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
            PCSEI +D+           +++    +EIWN+VFMQ+ +  K+    LP   IDTGMGL
Sbjct: 389  PCSEIHYDRIGNRDASS-LVNKDDPSVLEIWNIVFMQYNKDEKKNMNKLPFPCIDTGMGL 447

Query: 231  ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVDHLR 280
            ER+ ++LQ   +NYD DLF  + +  +++             +        +RV+ DH+R
Sbjct: 448  ERITSILQNVESNYDTDLFMPIFKQIKEIFNYLPEYGGKVNEEDVDRIDYAYRVVSDHIR 507

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL---GYTEPLMMHLLPALCTEMGSAY 337
              +  I+DG LP NEGR YV+RRI+RRA+   + +   G        L+ ++C  +   +
Sbjct: 508  CVTIAISDGCLPGNEGRNYVIRRIIRRAIRVGKQIFQVGSNVLWFYKLVDSVCHILNKCF 567

Query: 338  PELIQAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYD 392
             +L        I+  ++ E+  F +TL++G+   + ++      G D + +G  AF LY 
Sbjct: 568  TDLKDEDRVNYIKSVIKQEEMVFNRTLEKGVDQFNKIIKRGNTSGGDNLFSGKDAFDLYT 627

Query: 393  THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT--EKIWFSLKE 450
            ++G P+D++Q +   +    +++  FN+   + +  +  ++  +        +    LKE
Sbjct: 628  SYGFPIDLVQIMCEEKNFK-LNMTEFNELFRKHQLVSDTNNFKINKFFDLPVEKAHELKE 686

Query: 451  KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVS 507
            K+G            +  +   +         ++   V + V  I      ++    A  
Sbjct: 687  KHG-----------VAATVDHYKYEWNNADGKNVMAKVDTGVVVIYDGENFLDSIETASE 735

Query: 508  GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
             +K  ++  +T FY E GGQ+ DTG    + ++ ++ +VQ K     +H  +++ G ++ 
Sbjct: 736  DKKYALILRETNFYYENGGQIYDTGVIQNEQMKFEVVNVQ-KMNEYVLHIGVLQEGKIQK 794

Query: 568  EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-------------------- 607
               +   +++  R+ ++ NH+ATHLL+  +  +L  +V                      
Sbjct: 795  NDCVHTVVNFDRRKLVACNHTATHLLNFVIKKVLTEYVMHSKGGAQNGDLAHTPNEKEQT 854

Query: 608  ----------NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
                       GS +  + LRFD +  + ++   +  IE  VND+I Q L V  R M+ +
Sbjct: 855  GGNSIFNCDQKGSLVDDEKLRFDFSFFQNVSDELVSKIESQVNDLIRQELSVSVRTMDLK 914

Query: 658  DAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSSTGEI 705
            ++    G  A+    Y D V VV ++ +   +            S  LCGGTH+++T  I
Sbjct: 915  ESKKIKGIRAIFEEDYADVVNVVFIDNDVDKILNHLDVNYSYLCSIELCGGTHIANTKFI 974

Query: 706  MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL---------------- 749
                I SE SI  GI RI A+T ++A       D+ L                       
Sbjct: 975  KKFVITSEESIGKGIYRINAVTNKKAEEVEAKFDDLLAKYKHIFDDPNEGKLADVQTYKR 1034

Query: 750  ------------KVSQGNVVGRVEE-IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
                        K    + + ++E+ I E+ + +Q      K     +D +    + V  
Sbjct: 1035 VLKEDKFLPYIRKNQILHNLEKIEKNIIEKTKNMQKELFN-KATTIGKDYALEDKSGVLL 1093

Query: 797  MSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAV 853
               +   +    K L+ +  +   K          I  EK    +  V + L      A 
Sbjct: 1094 DVKLFDALSGNQKVLEKIAQSYC-KHNKLCSYFFIIDDEKNTYCVFEVKDSLKGTSIQAD 1152

Query: 854  DLARLSAKVLGGGGGGGR 871
               +   + + G  GGG+
Sbjct: 1153 AFMKEIMQSVEGHSGGGK 1170


>gi|147677395|ref|YP_001211610.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|146273492|dbj|BAF59241.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 537

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 228/556 (41%), Positives = 346/556 (62%), Gaps = 36/556 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++L+FF+K GH++LPS+SLIP NDP++++T +GMVPFK  FTG  KP Y  V
Sbjct: 1   MTGNEIRESYLKFFEKKGHKILPSASLIPLNDPSILWTAAGMVPFKPFFTGAAKPEYTRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+++VG+T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L 
Sbjct: 61  TTCQKCIRT----PDIESVGKTARHHTFFEMLGNFSFGDYFKESAIPWAWEFVTEHLRLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+I+++ +D+EAF++W K  G+ A +I+R+  + NFW +   GPCGPCSEI+ D G 
Sbjct: 117 ADKLWISIFLDDDEAFEIWNKTVGVPAGRIVRMGKDTNFWEIG-VGPCGPCSEIYVDLGA 175

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++EIWNLVF+QF +  +     L    IDTG GLER+A+V+Q 
Sbjct: 176 ERGCGSPECKVGCDCDRFLEIWNLVFIQFFKDEEGNYTPLTSKGIDTGFGLERVASVMQG 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N+D DLF+ ++  +  + G+KY  +G   V  +VI DH R+ +F +ADG LP+NEGR
Sbjct: 236 VPTNFDTDLFREIMDFTAGLFGLKYGVDGRVDVALKVIADHCRAITFAVADGALPSNEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + RLLG  +P +  +  A+  +MG  YPEL+  +  +   +R E+ER
Sbjct: 296 GYVIRRLLRRAVRFGRLLGIEDPFLHEVSGAVVRQMGRVYPELVTQREHVFRVIRREEER 355

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           FG+TL +G  +L+ +++   +    +++G+ AF+LYDT+G PL++ Q++   +GL  +D 
Sbjct: 356 FGETLAQGTEMLNRLIAEARQAGSAVVSGEDAFRLYDTYGFPLELTQEMAGEQGLT-VDT 414

Query: 416 ISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F +A+EEQR RAR+           + ++  ++E+ G T F+GYD L           
Sbjct: 415 DGFGRAMEEQRQRARSARQETDYISGRDAMFKKMREEVGETVFVGYDALE---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         +  V  IVQ G+ +E A +G++VE + D TPFYAE+GGQ+ D G  
Sbjct: 465 -------------ATGRVLRIVQGGKRLESAQAGEEVEFILDVTPFYAESGGQVSDRGKV 511

Query: 535 IGDGIRLQITDVQKKA 550
               + ++I +V K  
Sbjct: 512 TAADLEVEIHEVTKPV 527


>gi|157818067|ref|NP_001100361.1| alanyl-tRNA synthetase, mitochondrial [Rattus norvegicus]
 gi|313471549|sp|D3ZX08|SYAM_RAT RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor
 gi|149069292|gb|EDM18733.1| alanyl-tRNA synthetase like (predicted) [Rattus norvegicus]
          Length = 985

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 269/969 (27%), Positives = 435/969 (44%), Gaps = 101/969 (10%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 35  AAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFK+ A  +AW+LLT+ 
Sbjct: 95  RRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKKEACSMAWELLTQV 154

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +  D         E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 155 YGIPEDRLWVSYFSGDSKTGLDPDLETRDIWLSL-GVPASRVLSFGLQENFWEMGDTGPC 213

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D                 + +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 214 GPCTEIHYDL---------AGGMGPPQLVELWNLVFMQHYREADGSLHLLPQQHVDTGMG 264

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q   +                  +RV+ DH+R
Sbjct: 265 LERLVAVLQGKHSTYDTDLFSPLLDAIHQSCRVPPYSGRVGAADEGRIDTAYRVVADHIR 324

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+   L      + +L+P +   +G+AYPE
Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGNLVPVVVATLGAAYPE 384

Query: 340 LIQAKL-----LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYD 392
           L +  +      I   +  ++  F  +L RG  ++D  +  LG  ++   +VA+   L  
Sbjct: 385 LQKNSVKVLIWEIANLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSG 444

Query: 393 THGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
             G+PLD++Q +L  +G+      +    Q   + R++    +   G          L  
Sbjct: 445 NLGIPLDLVQLMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEAAQEEGLCLDVHALEELHR 504

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQ 509
           +   T                      +           + V  +  + G  V     GQ
Sbjct: 505 QGIPT-----------TDDSPKYNYSLRPNGDYEFGLCEAQVLQLYSETGTAVASVGEGQ 553

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +  ++ D+T FYAE GGQ  D G  I      +     + +  G F+ H  +    L+  
Sbjct: 554 RCGLLLDRTNFYAEQGGQASDRGYLIRTGQQDVLFPVARAQVCGGFILHEAMAPECLQVG 613

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D   R    + H+ATHLL+ AL   LG    Q GS + P+ LRFDV    P+T
Sbjct: 614 DRVQLYVDKAWRMGCMVKHTATHLLNWALRQTLGPTTEQRGSHLNPERLRFDVATQTPLT 673

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RV 678
           + +L+++E  V + + Q+ PV    +             L   Y D V          + 
Sbjct: 674 TEQLRTVESYVQEAVGQDKPVYMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAQA 733

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHL 735
           ++   +     S  LC GTH+ STG +  L I+ +  +  GI R+ AITG+   +AR   
Sbjct: 734 LAPASQAALQTSVELCCGTHLLSTGAVGDLVIIGDRQLVKGITRLLAITGEQAQQAREVG 793

Query: 736 MGQDEKLKSLASFLKVSQGNVVGR------VEEIWE-----------------EYRKLQL 772
               ++++  +  L     +++        +  + E                   + LQ 
Sbjct: 794 QSLSQEVEVASERLSRGSRDLLEAHRLSKDIGRLIEFTESAVIPQWQRQEQQTTLKMLQR 853

Query: 773 IH--AKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               A RKL+ +       ++    ++   +   +S      L  V+  L K+  S  ++
Sbjct: 854 RANTAIRKLEKSQATEKSQELLKRHSEGPLIVDTVSAQSLSVLVKVVRQLCKQAPSMSVL 913

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L+             V +     F A   A      + GG   G P +AQ  G +    +
Sbjct: 914 LLSPQPTGSVLCACQVAQGATPTFTAEAWALAVCSHM-GGKAWGSPVIAQGTG-HTADLE 971

Query: 887 QAIAGVASF 895
            A+    ++
Sbjct: 972 AALRTARAY 980


>gi|324507432|gb|ADY43152.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 693

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 224/696 (32%), Positives = 340/696 (48%), Gaps = 39/696 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + +R+ F+ FF    H  + SSS+IP  DPTL+F N+GM  FK IF G   P      
Sbjct: 6   TANEVRSAFINFFANREHTYVHSSSVIPFEDPTLLFANAGMNQFKPIFLGTVDPSSELGR 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLTKE
Sbjct: 66  LRRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCNWAWELLTKE 125

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             +   +LY++ +          D+E  ++W    GL   +++     DNFW M + GPC
Sbjct: 126 LGIPADQLYVSYFGGDEKAGLAPDDECRQIWLD-IGLPESRVLPFGMKDNFWEMGDVGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI FD+           + +    +EIWNLVFMQ+ ++       LP   ID G+G
Sbjct: 185 GPCSEIHFDRVGNRDASA-LVNADDPMVVEIWNLVFMQYNREEGGVLRELPMRHIDCGLG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+  V+Q KT+NYD D F  +  A +    ++               + +RV+ DH+R
Sbjct: 244 LERLVAVMQNKTSNYDTDAFTPIFDAIQASVCVRAYSGKVGAADSDGIDMAYRVVSDHIR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           +    ++DG  P + GRGYVLRRI+RR + YA   LG        L+P +   +G  +PE
Sbjct: 304 TLCVALSDGGRPDSTGRGYVLRRILRRGVRYANEKLGAPPGFFASLVPVVVRLLGDTFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPL 398
           L +    + + +  E+ +F KTL RG  L    ++ L  + +   GD+A++LYDT+G P+
Sbjct: 364 LRKDPETVMDIINDEEAQFLKTLSRGRSLFQKAVAALESEAKQFPGDIAWRLYDTYGFPV 423

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQ 456
           D+ Q +   +    +D+ +F Q  ++    + A +          +     LK+    + 
Sbjct: 424 DLTQLMAEEK-QLSVDMDAFEQCRQKAVEMSSAGANKFRDTAELDVHGIAKLKKDGVPS- 481

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                    S                         V A++++G  V+   SG K  V+ D
Sbjct: 482 ------TDDSPKYDYSAVGPNDITAKYSFAKCEGQVLALLKEGTFVDSLYSGDKGAVILD 535

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ+ DTG     G    +      +  G +V       G +     L+  I
Sbjct: 536 RTNFYAEQGGQIYDTGVLTKIGDEGAEFEVSNVQMRGGYVVLVGSVEGNISIGDRLLQAI 595

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R  +  NH+ TH+L+ AL  +LG  V Q GS + PD +RFD +    +TSA+++  
Sbjct: 596 DEERRSLIMKNHTGTHVLNFALRRVLG-DVEQKGSLVAPDKMRFDFSAKHALTSAQVREA 654

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGT 670
           E+    +I  +  V  +     +A    G  A+   
Sbjct: 655 EELAQGMIETHAAVFAKDAPLAEAREVKGLRAVFDE 690


>gi|73973034|ref|XP_532155.2| PREDICTED: similar to alanyl-tRNA synthetase like [Canis
           familiaris]
          Length = 985

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 274/960 (28%), Positives = 428/960 (44%), Gaps = 92/960 (9%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60
           +R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ 
Sbjct: 42  VRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVNPRSEMAGFRR 101

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFD 119
           V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + 
Sbjct: 102 VANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYG 161

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           + + RL+++ +  D         E+  +W  + G+ A  ++     +NFW M +TGPCGP
Sbjct: 162 IPKDRLWVSYFGGDPKAGLDPDLESRDIWLNL-GVHASHVLSFGPEENFWEMGDTGPCGP 220

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           C+EI +D    +            + +E+WNLVF+Q  ++       LP+  +DTGMGLE
Sbjct: 221 CTEIHYDLAGRVGA---------PQLVELWNLVFIQHNRETDGSLQPLPQRHVDTGMGLE 271

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLRSS 282
           R+  VLQ   + YD DLF  L++A  Q  G            +G   + +RV+ DH+R+ 
Sbjct: 272 RLVAVLQGTPSTYDTDLFSPLLKAIHQGCGAPPYLGQVGAADKGRTDMAYRVVADHIRTL 331

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341
           S  IADG+ P   G   VLRRI+RRA+ ++   L      +  L+P +   +G  YPEL 
Sbjct: 332 SVCIADGVYPGMSGAPLVLRRILRRAVRFSTEVLQAPPGFLGSLVPVVVEILGDTYPELQ 391

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLPLD 399
           +    I   +  E+  F  +L RG  ++D  L  LG  E+   +VA+   L    GLPLD
Sbjct: 392 KHSAQIASLVSEEEAAFLASLQRGRRIIDQTLRCLGPSELFPAEVAWSLSLSGNLGLPLD 451

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +++ +L  +G+          A EE + R+R        G    +        G  Q  G
Sbjct: 452 LVELMLEEKGVQLDSAGLARLAQEEAKLRSRQAEPVQRQGLQLNV-----HALGELQRRG 506

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQT 518
                             +       N   + V  +  + G  V     GQ   ++ D+T
Sbjct: 507 ----VPPTDDSPKYNYSLRPSGGYEFNPCEAQVLQLYLEDGTAVASVGKGQHCGLLLDKT 562

Query: 519 PFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
            FYAE GGQ  D G  +  G   +     + +  G F+ H  V    L+    + L +D 
Sbjct: 563 NFYAEQGGQASDRGYLVRVGQEDVLFPVARAQICGGFILHEAVAPEGLKVGDQVQLHVDE 622

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATHLL+ AL   LG    Q GS + P+ LRFDV    P+T  +L+++E 
Sbjct: 623 AWRLGCMEKHTATHLLNWALRQALGPGTEQRGSHLNPERLRFDVATQAPLTPEQLQAVEG 682

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDGG 687
            V + + Q+  V    +             L   Y D V          R +    +   
Sbjct: 683 TVQEAVGQDEAVYMEEVALAHTAHVPGLRSLDEVYPDPVRVVSVGVPVARALDPASQAAL 742

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-- 745
             S  LC GTH+  TG +  L I+ E  +  G  R+ A+TG++A+          + +  
Sbjct: 743 QTSVELCCGTHLLRTGAVGDLVIIGERQLTKGTVRLLAVTGEQAQQAREVGQSLAQEVEA 802

Query: 746 --------------ASFLKVSQGNVVGRVE----------EIWEEYRKLQLIH--AKRKL 779
                         A  L    G ++  V+          E+    + LQ     A RKL
Sbjct: 803 ATERLSRGSQDVVEAHRLSKDMGRLIDAVDTAVMPQWQRRELQAALKVLQRRANTALRKL 862

Query: 780 QLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +L        ++    ++   +   ++      L  V+  L ++     ++L+    +  
Sbjct: 863 ELRQAAQKTQELLQRHSEGPLIVDTVAAESLSVLVKVVRQLCERAPCTSVLLLSPQPQGH 922

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
                 V +  +  F A   A      + GG   G   +AQ  G   +  + A++   ++
Sbjct: 923 VLCACQVAQSAMPAFTAEAWALAVCSHM-GGKAWGSQVVAQGTGTTAD-LEAALSTARTY 980


>gi|260201682|ref|ZP_05769173.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T46]
          Length = 819

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 286/842 (33%), Positives = 428/842 (50%), Gaps = 67/842 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKISGL 146
           M GNFSFG YFK  AI+LAW LLT       + LD  R++ TVY +D+EA +LW++++GL
Sbjct: 1   MAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGL 60

Query: 147 SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFM 206
            A++I R    DN+WSM   GPCGP SEI++D+G            E  RY+E+WNLVFM
Sbjct: 61  PAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED-RYLEVWNLVFM 119

Query: 207 QFEQQNKQERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           Q E+     +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V 
Sbjct: 120 QNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVA 179

Query: 261 GMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
              Y      + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG 
Sbjct: 180 ARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGI 239

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--H 375
              ++  L+  +   MG +YPEL+     I     +E+  F +TL  G  L + V S   
Sbjct: 240 DAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTK 299

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
                +L+G  AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A +  
Sbjct: 300 KSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAAA 358

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
                 +   +      GAT+F G+D LR                         + +  I
Sbjct: 359 RKHAHADLSAYRELVDAGATEFTGFDELRS-----------------------QARILGI 395

Query: 496 VQQGEIVEE--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG----DGIRLQI 543
              G+ V          A  GQ+VE+V D+TP YAE+GGQ+ D G   G    +  R  +
Sbjct: 396 FVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAV 455

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           TDVQK A+ ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG 
Sbjct: 456 TDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGP 515

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           +  Q GS   P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A G
Sbjct: 516 NAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMG 575

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G  Y D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+
Sbjct: 576 AIALFGESYPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRV 631

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL---- 779
           EA  G  +  HL  +   +  LAS LKV    V  RV  + E  R  +    + ++    
Sbjct: 632 EAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASAR 691

Query: 780 -QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS--GIIMLVGISKEKK 835
                      +I +V  ++  +S  + + +L+S++  ++ K+ S   ++ L+   + + 
Sbjct: 692 AAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQT 751

Query: 836 ASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
               +       D    A DL +  A  +  G GGG+  +AQ  G N    D A+  V S
Sbjct: 752 VPYAVAANPAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVRS 810

Query: 895 FL 896
            +
Sbjct: 811 EI 812


>gi|13357929|ref|NP_078203.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762259|ref|YP_001752452.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920314|ref|ZP_02931660.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508708|ref|ZP_02958194.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|81624421|sp|Q9PQC2|SYA_UREPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830281|sp|B1AJ08|SYA_UREP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|11271362|pir||D82899 alanyl-tRNA synthetase UU369 [imported] - Ureaplasma urealyticum
 gi|6899351|gb|AAF30778.1|AE002134_2 alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827836|gb|ACA33098.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902731|gb|EDT49020.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675631|gb|EDT87536.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
          Length = 906

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 272/945 (28%), Positives = 458/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLINVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+     W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTNDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGER 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKIGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMRITKSVEQFSEYKYDMNEYFHPNVTQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVDAIASTMGDFYTYLKDEKT 358

Query: 346 LI--EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           L   +  L  E + F KTL  GL + +  + +    + L+ ++ FKL DT+G P+++++ 
Sbjct: 359 LTKIKMILNKEVQLFEKTLQLGLNIFENSIRN----QELDKEITFKLVDTYGFPIELIK- 413

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
            +C +    +D+ +F+   +  +  ++A+   L    ++    SL +    + F  Y++ 
Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLISKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                        ++ +  +  +   + + +  +   VVFD T FYA 
Sbjct: 471 RWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH       +     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEHVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKHVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GAAA     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741
            T EI  + IV  +S  AG  RI  +TG              +L             D K
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVDYLNEINHLKVNLDINDHK 740

Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793
           L  L +       +S  +   +  +  E+ +     ++   K+  +  + D+        
Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFAELKQSLINFKIEFDKQNAKQAIIDIKNTFNTQL 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q  + +   +  + K   L+ + E     ++ N
Sbjct: 801 TNKRVHVFKNTDNKNIFNALNELINENQDTLFISFNLD-DNKIQYLLAINEKFATTNQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  V  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTVVDKWV 903


>gi|281307084|pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Alasa
 gi|281307085|pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Glysa
 gi|281307086|pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Sersa
 gi|281307087|pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Amppcp
 gi|281307088|pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Amppcp, Ala-Amp And Pcp
          Length = 441

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 234/441 (53%), Positives = 308/441 (69%), Gaps = 14/441 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 2   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 61

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW LLT  K F 
Sbjct: 62  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFA 121

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 122 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 242 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 300 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 360 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 418

Query: 412 GIDIISFNQALEEQRSRARAH 432
            +D   F  A+EEQR RAR  
Sbjct: 419 -VDEAGFEAAMEEQRRRAREA 438


>gi|186701671|ref|ZP_02971369.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|186700919|gb|EDU19201.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 906

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 272/945 (28%), Positives = 459/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLINVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+     W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTNDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGER 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKIGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMRITKSVEQFSEYKYDMNEYFHPNVTQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKL 345
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVDAIASTMGDFYTYLKDEKT 358

Query: 346 LI--EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           L   +  L  E + F KTL  GL + +  + +    + L+ ++ FKL DT+G P+++++ 
Sbjct: 359 LTKIKMILNKEVQLFEKTLQLGLNIFENSIRN----QELDKEITFKLVDTYGFPIELIK- 413

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
            +C +    +D+ +F+   +  +  ++A+   L    ++    SL +    + F  Y++ 
Sbjct: 414 EICEQRNVKVDLEAFDAMFKHHQLISKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                        ++ +  +  +   + + +  +   VVFD T FYA 
Sbjct: 471 RWE----------------------NAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH       +     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHHVKNASLSM--NEHVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKHVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GAAA     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQR---------ARSHLMG----------QDEK 741
            T EI  + IV  +S  AG  RI  +TG              +L             D K
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVDYLNEINHLKVNLDINDHK 740

Query: 742 LKSLASFL----KVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIAD 793
           L  L +       +S  +   +  +  E+ +     ++   K+  +  + D+        
Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFAELKQSLINFKIEFDKQNAKQAIIDIKNTFNTQL 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q  + +   +  + K   L+ + E    +++ N
Sbjct: 801 TNKRVHVFKNTDNKNIFNALNELINENQDTLFISFNLD-DNKIQYLLAINEKFATINQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  V  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTVVDKWV 903


>gi|313678597|ref|YP_004056337.1| alanine--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950312|gb|ADR24907.1| alanine--tRNA ligase [Mycoplasma bovis PG45]
          Length = 880

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 283/938 (30%), Positives = 457/938 (48%), Gaps = 103/938 (10%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+FF+   H ++ S SLIP NDP+L++ NSG+   KN F+G++ P  
Sbjct: 1   MKKLTSTEIRQKWLDFFESKNHLVIESKSLIPVNDPSLLWINSGVATLKNYFSGKKVPPA 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +T  QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI  A + L    
Sbjct: 61  FRLTNSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAYAKEFLVNVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++D  +LY T Y+ED EA   W + +G+    +I  T + NFW +  +GPCGPC+EIF+D
Sbjct: 117 EMDFEKLYFTYYEEDLEAKNYWLE-NGVDESHLISGTRDTNFWDLG-SGPCGPCTEIFYD 174

Query: 179 QGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +GE        L  +  E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+
Sbjct: 175 RGEKYDSRGIDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYTELKQKNIDTGAGLERLAS 234

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSF 284
           ++Q+   NYD DLF ++I+  E+ +  KY   N             N ++I DH+R+   
Sbjct: 235 IMQDVPTNYDSDLFINIIREIEKYSRYKYIIENYFVKDEHQSEINTNFKIIADHIRTVVN 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            IADG   +N GRGY++RR++RR+      LG  +  +  L+  +   +   Y E     
Sbjct: 295 AIADGAKVSNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVKVVKDSLPYEYDEKD--- 351

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             + + ++ E+  F KT+++G +LL+  L +  ++++ +G VAF L +T+G P+++  +I
Sbjct: 352 --VIDAIKEEELLFSKTIEKGKILLESFLDN--ENKVFDGAVAFNLLETYGFPIELTAEI 407

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLL 463
           L  +G   +D+ +F       + +    S G  +   +K+  SL         F+GY  L
Sbjct: 408 LHQKG-IRVDMEAFE----LAKEKHALASKGGKATGMDKVINSLALIDKKMDNFVGYSEL 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                    SS V  +  +   VE   +G    V+ + TPFYA 
Sbjct: 463 -----------------------SASSKVLKLFDEENEVESFETG--GYVLLETTPFYAT 497

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  D G  I    +++I DV K     F +H     G +     +   +D   R  L
Sbjct: 498 SGGQRHDKGFIIQGENKIKIIDVFKDK---FGNHIHFVEGKMNNYEPVSSFVDPNIRIGL 554

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHS THLL  AL  +LGSH+ Q GS    + L FD    +  +  ++K+IED V   I
Sbjct: 555 ERNHSGTHLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAIEDLVRSYI 614

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +++         + A   GA   L        R V V     G  +S LCGGTH+S+T 
Sbjct: 615 TKSIDREYITTTVDKAREMGAIMTLEEGEYMDPRAVRVVRF--GDITSDLCGGTHLSNTS 672

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLK-SLASFLKVSQG------- 754
           ++    I +    +AG+ RI AI+  +    +L   ++KL   LA+ +K  +        
Sbjct: 673 KLESFKITNVEKKQAGVFRIRAISSIKLVNEYLSEVNKKLNEELATIIKKIKELKNDYVA 732

Query: 755 ---------------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
                          ++  R++E+ E Y++L    +   L+ + E +   KI + +   +
Sbjct: 733 PVINENEPDIETLNLSINKRIDELREVYKQLLKESSN--LEFDYETVKFDKINNYDVYIN 790

Query: 800 IISEVDSKELKSVMDALQKKIQSG-IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           +  +VD+  +K +  +++ K QSG  + ++G   EK+  + I          +A  + + 
Sbjct: 791 L--DVDASSVKLIAASIRDKFQSGKTVAIIGSKNEKELLLAIA-----TRAIDANKMFKK 843

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +  L  G GGG P +A          +   + +  +L
Sbjct: 844 LSSELN-GRGGGAPILAMGKMNYSENIE---SLIKDYL 877


>gi|294660251|ref|NP_852904.2| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|83305848|sp|Q7NBY8|SYA_MYCGA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|284811906|gb|AAP56472.2| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|284930365|gb|ADC30304.1| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)]
          Length = 902

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 258/935 (27%), Positives = 435/935 (46%), Gaps = 96/935 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  +L+FF+   HE++ S SL+P NDP+L++ N+G+   K  F+G+E P+   + 
Sbjct: 6   SGSQIRQIWLDFFKSKKHEIIESKSLVPINDPSLLWINAGVATLKKYFSGEENPINPRLA 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q+C+RA    ND++NVG T+RHHT FEMLGNFS G YFK+ AI+  ++LLTK + L++
Sbjct: 66  NSQRCIRA----NDIENVGVTSRHHTVFEMLGNFSIGDYFKKEAIEFGYELLTKFYGLNK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LYIT+Y++D +AF  W    G++   IIR     NFW +  +GPCGP +EI++D+GE 
Sbjct: 122 DKLYITIYEDDNDAFNYWVGQ-GINPHHIIRCDRKRNFWDLG-SGPCGPSTEIYYDRGEK 179

Query: 183 IPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                          E +RYIE+WN+VF QF          L + +IDTG  LER A +L
Sbjct: 180 YDPNKLGEKLFFEDIENDRYIEVWNIVFSQFNNTGNNNYTELLRKNIDTGASLERFACIL 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLI 286
           Q+   NYD DL+  +I+  E+ T  KY  ++  +            RVI DHL+   F I
Sbjct: 240 QDVPTNYDTDLYLPIIRTIEKHTNHKYVVDHYFSKDQSEQDVLRAFRVIADHLKCGVFAI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+LP  + R Y++R+++RRA  YA+ L      ++  +  +       +  LI  K +
Sbjct: 300 ADGVLPGAKDRDYIIRKLLRRAFVYAKKLNAKPEYLVETINVIINTYSDFFKYLIPNKEI 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + + +E   F KTLD G  + +           +  +  FKL +T+G PLD+++++  
Sbjct: 360 VIQAITNEANNFTKTLDYGFEIFNE----AKTTNNITAETIFKLVETYGFPLDLIKELSA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D+  F +  ++ +  ++A++  +G     +   +L +    ++F  YD     
Sbjct: 416 EAKIK-LDLDGFEELFKKHQEISKANNGEVGLKKQNE---NLLKFKTPSKF-FYD----- 465

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              N + + V AI       V++   G     VF+ TP YA +G
Sbjct: 466 ------------------KNNIKTKVVAIFDDKFNPVDQIEVG-SGWAVFESTPIYATSG 506

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G  +  G  +   D   KA      H   ++        + L  D   R+ +  
Sbjct: 507 GQRFDEGYCLKKGNLVVHFDNVIKAPNKQHLH-HFKKASFWLNEKVELMHDENWRKLVRK 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHS  H+LH  L   +   + Q+G+  +      D  +   +T  +L  IE  +  +IA 
Sbjct: 566 NHSLEHILHATLKNTISETIKQSGAFKSAAKATLDFNYPTRLTDEDLDKIETKMRQVIAD 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV    ++ E +    A A    +Y     +  ++    G +S  LCGGTHV +T EI
Sbjct: 626 KIPVTVHHVDYETSQKMNAIAYFEEEYKKHELLRVIK---IGDYSVELCGGTHVDNTKEI 682

Query: 706 MLLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKSLASFL--------------- 749
              +I +  S+ AG  RIE ++      ++L+ +  ++K     +               
Sbjct: 683 EECFITNLYSLGAGRWRIEIMSSYETIYNYLVDKQNEIKQEKDHMFNELGNYDLTHYLDF 742

Query: 750 --KVSQGNVVGRV----------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV--N 795
             K+   N+   +          E+I EEY+ ++L   K+K +     +    + ++   
Sbjct: 743 SKKLHSFNLPNSIKDLRKTLRAFEQIKEEYKAIKLELDKKKTKDRANQIKKLALDNLEHK 802

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            +     + + K L      L  +    +   +  S + K + LI + ++   + NA  L
Sbjct: 803 IVLLFFDKEEHKALSIAHSELVNEKPDHLFFFINKS-DNKINYLIGI-KNATYKLNAKLL 860

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGG---PNGNKADQ 887
                  + G  GGG+ + AQ G     +  K   
Sbjct: 861 IDKV-NAMFGAKGGGKQNFAQGGFSTDKDVGKLKA 894


>gi|148691494|gb|EDL23441.1| alanyl-tRNA synthetase like [Mus musculus]
          Length = 984

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 273/968 (28%), Positives = 432/968 (44%), Gaps = 100/968 (10%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+++ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 35  AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ 
Sbjct: 95  RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 154

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +  D         E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 155 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 213

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D                 + +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 214 GPCTEIHYDL---------AGGVGSPQLVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 264

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q  G                   +RV+ DH+R
Sbjct: 265 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 324

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+   L      +  L+P +   +GSAYPE
Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 384

Query: 340 LIQAKLLIEETL----RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDT 393
           L +  + +   +      ++  F  +L RG  ++D  +  LG  ++   +VA+   L   
Sbjct: 385 LEKNSVKVLIEIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGN 444

Query: 394 HGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
            G+PLD+++ +L  +G+      +    Q   + R++                   L  +
Sbjct: 445 LGIPLDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVHALEELHRQ 504

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQK 510
              T                                  + V  +  + G  V    +GQ+
Sbjct: 505 GIPT-----------TDDSPKYNYTLHPNGDYEFGLCEARVLQLYSETGTAVASVGAGQR 553

Query: 511 VEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE GGQ  D G         +       +  G F+ H  +    L+   
Sbjct: 554 CGLLLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEAMAPERLQVGD 613

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + L +D   R    + H+ATHLL  AL   LG    Q GS + P+ LRFDV     +T+
Sbjct: 614 QVQLYVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRFDVATQTLLTT 673

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--------- 680
            +L+++E  V +++ Q+ PV    +             L   Y D VRVVS         
Sbjct: 674 EQLRTVESYVQEVVGQDKPVFMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAHAL 733

Query: 681 -VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLM 736
               +     S  LC GTH+ STG +  L I+ E  +  GI R+ AITG+   +AR    
Sbjct: 734 GPASQAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQ 793

Query: 737 GQDEKLKSLASFLKVSQGNVVG--RV---------------------EEIWEEYRKLQLI 773
              +++++ +  L     ++    R+                     +E+    + LQ  
Sbjct: 794 SLSQEVEAASERLSQGSRDLPEAHRLSKDIGRLTEVAESAVIPQWQRQELQTTLKMLQRR 853

Query: 774 H--AKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              A RKL+         ++    ++   +   +S      L  V+  L K+  S  ++L
Sbjct: 854 ANTAIRKLEKGQATEKSQELLKRHSEGPLIVDTVSAESLSVLVKVVRQLCKQAPSISVLL 913

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +             V +D    F A   A      +GG   G R  +AQ  G +    + 
Sbjct: 914 LSPQPTGSVLCACQVAQDATPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTG-HTADLEA 971

Query: 888 AIAGVASF 895
           A+    ++
Sbjct: 972 ALGTARAY 979


>gi|221057404|ref|XP_002261210.1| alanine--tRNA ligase [Plasmodium knowlesi strain H]
 gi|194247215|emb|CAQ40615.1| alanine--tRNA ligase, putative [Plasmodium knowlesi strain H]
          Length = 1180

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 267/1006 (26%), Positives = 444/1006 (44%), Gaps = 131/1006 (13%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
            +   +R  F+ +F++  H ++ S+S+IP ND TL+FTN+GM  FK IF GQ         
Sbjct: 192  SAEEVRGRFINYFKEKKHTVMESASVIPYNDNTLLFTNAGMNQFKKIFLGQVDKNSDLGK 251

Query: 59   -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
             +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I  AWDLLT  
Sbjct: 252  LKRAVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIDYAWDLLTNV 311

Query: 118  FDLDQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +D  RLY+T +  DE         EA ++W K   L   +I+     +NFW MAETGP
Sbjct: 312  YKIDPNRLYVTYFGGDEKLPGCPEDFEAKRIWLKY--LDESRILPFGMKENFWEMAETGP 369

Query: 169  CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            CGPCSEI +D+           + +    +EIWN+VFMQ+ +  K+    LP   IDTGM
Sbjct: 370  CGPCSEIHYDRIGGRDASS-LVNMDDPSVLEIWNIVFMQYNKDEKKNMNKLPFPCIDTGM 428

Query: 229  GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVDH 278
            GLER+ ++LQ   +NYD DLF  + +  +++             +  G     +RV+ DH
Sbjct: 429  GLERITSILQNVESNYDTDLFMPIFKQIKEIFNHLPEYGGKVNEEDVGRIDYAYRVVSDH 488

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP---LMMHLLPALCTEMGS 335
            +R  +  I+DG LP NEGR YV+RRI+RRA+   + +   E        L+ ++C  +  
Sbjct: 489  IRCVTIAISDGCLPGNEGRNYVIRRIIRRAIRVGKQIFQVESNVLWFYKLVDSVCQILKK 548

Query: 336  AYPE--LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK---DEILNGDVAFKL 390
             + +         I+  ++ E+  F KTL++G+   + ++        D+I NG  AF L
Sbjct: 549  CFTDLQDENRVNYIKSIIKQEEMVFNKTLEKGVDQFNKIIKKSNNAGGDKIFNGKDAFDL 608

Query: 391  YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
            Y ++G P+D++Q +   +      +  F      ++ +  + +          +      
Sbjct: 609  YTSYGFPIDLIQIMCEEKNFK---LNMFEFNELFKKHQLVSDTNNFKINKFFDLPVEKAH 665

Query: 451  KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV---S 507
            +    +  G +        + +            TN     +  I      ++       
Sbjct: 666  ELK--EKHGVEATEDHHKYEWNNDDRRNDMKKVDTN-----IVVIYDGENFIDSIKTPND 718

Query: 508  GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
             +K  ++  +T FY E GGQ+ DTG      ++ Q+ +V +K     +H  I++ G +  
Sbjct: 719  DKKYALILKETNFYYENGGQIYDTGVIENGQMKFQVLNV-QKMNDYVLHIGILKEGKIEK 777

Query: 568  EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV---------------------- 605
              S+   +++  R+ ++ NH+ATHLL+  +  +L  +V                      
Sbjct: 778  NDSVHTYVNFDRRKLVACNHTATHLLNFVIKKVLTEYVVNGEGQMKNGDLVQKKNEKEET 837

Query: 606  --------SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
                     Q GS +  + LRFD +  + I+   +  IE  VND+I Q L V  R M+ +
Sbjct: 838  GMNSIFNCDQKGSLVDDEKLRFDFSFFQNISDDLVSKIESQVNDLIKQELSVSVRTMDLK 897

Query: 658  DAIA-SGAAALLGTKYNDRVRVVSVEYEDGG-----------VHSSALCGGTHVSSTGEI 705
            ++    G  A+    Y D V VV ++ +              + S  LCGGTH+++T  I
Sbjct: 898  ESKKIKGIRAIFEEDYADVVNVVFIDNDVDKILNHLDVNYSYMCSIELCGGTHIANTKFI 957

Query: 706  MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG----------- 754
                I SE SI  GI RI A+T ++A       D          +               
Sbjct: 958  KKFIITSEESIGKGIYRINAVTNRKAEEVEAKFDNLYAKYKHIFEDPNEGKLAEVQTYKR 1017

Query: 755  --------------NVVGRVEE----IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
                           ++ ++E+    I E+ + +Q      K     +D +    + V  
Sbjct: 1018 ILKEDKFLPYIRKNEILNKLEKIEKNIIEKTKNMQKELFN-KATAIGKDYALEDKSGVLV 1076

Query: 797  MSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNA 852
               +   +  + K L+ +  +  K  +      +    ++K +  +   +D L      A
Sbjct: 1077 DVKLFDALCGNQKVLEKIAQSYCKHNKLCSYFFI--IDDEKNTYCVFEMKDSLKGITIQA 1134

Query: 853  VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA---DQAIAGVASF 895
                +   + + G  GGG+ + A      G      + A+  +  +
Sbjct: 1135 DTFMKEIMQSVEGHSGGGK-NKAFGSAAKGKGVIIKELALEALKKY 1179


>gi|300794887|ref|NP_001178140.1| probable alanyl-tRNA synthetase, mitochondrial [Bos taurus]
          Length = 983

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 272/951 (28%), Positives = 418/951 (43%), Gaps = 91/951 (9%)

Query: 4   VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
            +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      
Sbjct: 37  AAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAG 96

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTK 116
           ++ V   QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+
Sbjct: 97  FRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ 156

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + + + RL+++ +  D         E+  +W  + G+ A +++     +NFW M +TGP
Sbjct: 157 VYGIPEDRLWVSYFGGDPKAGLGPDLESRDIWLSL-GVPASRVLSFGPEENFWEMGDTGP 215

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D                 + +E+WNLVFMQ  ++       LP+  +DTGM
Sbjct: 216 CGPCTEIHYDL---------AGGAGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGM 266

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHL 279
           GLER+  VLQ + + YD DLF  L+ A  Q  G                   +RV+ DH+
Sbjct: 267 GLERLVAVLQGRLSTYDTDLFSPLLDAIHQGCGAPPYSGRIGAADEGRTDTAYRVVADHI 326

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338
           R+ S  IADG+ P   G   VLRRI+RRA+ ++   L      +  L+P +   +G AYP
Sbjct: 327 RTLSVCIADGVSPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAYP 386

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGL 396
           EL ++   I   +  ++  F  +L RG  +++  L  LG  ++   +VA+   L    GL
Sbjct: 387 ELRRSSAQIASLVSEDEAAFLASLQRGRRVIERTLKRLGPSDVFPAEVAWSLSLSGNLGL 446

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+++ +L  +G+          A EE + RA         G    +        G  Q
Sbjct: 447 PLDLVELMLEEKGVPLDTAGLERLAQEEAQHRALQAEPVQEQGLRLNV-----HALGELQ 501

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVF 515
             G                  Q           + V  +  + G  V     GQ   ++ 
Sbjct: 502 RRG----VPPTDDSPKYSYSLQPGGSYKFGTCEAQVLQLYTEDGTAVASIGDGQHCGLLL 557

Query: 516 DQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  D G  +      +     + +  G F+ H +V    LR    + L 
Sbjct: 558 DKTNFYAEQGGQASDRGYLVLVGQQDVLFPVARAQVCGGFILHEVVAPERLRVGDQVQLH 617

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   R      H+A HLL+ AL  +LG    Q GS + P+ LRFDV    P+T  +L++
Sbjct: 618 VDEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERLRFDVATQAPLTPEQLRA 677

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYE 684
           +E  V   + ++  V    +             L   Y D VRV          +    +
Sbjct: 678 VEVTVQKAVGRDEAVYMEEVALARTAHVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQ 737

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S  LC GTH+  TG I  L I+ E  +  GI R+ A+ G++A+          + 
Sbjct: 738 AALHTSVELCCGTHLLRTGAIGDLVIIGERQLVKGITRLLAVNGEQAQQAREVGQRLAQE 797

Query: 745 L----------------ASFLKVSQGNVVGRVE----------EIWEEYRKLQLIH--AK 776
           +                A  L    G +   V+          E+    + LQ     A 
Sbjct: 798 VEAAAARLSQGSRHVAEAHRLSKDMGRLTDAVDTATMPQWQRRELQATLKALQRRANTAV 857

Query: 777 RKLQLNVEDLSCHKIA----DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           RKL++        ++     +   +   +S      L  V+  L  +     ++L+    
Sbjct: 858 RKLEMGQAAQKTQELLQRHMEGPLIVDTVSTESLSMLVKVVRQLCTQAPGTSVLLLSPQP 917

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
             K      V +     F A   A      +GG   G R  +AQ  G   +
Sbjct: 918 LGKVLCACQVAQSATPAFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTAD 967


>gi|156054306|ref|XP_001593079.1| hypothetical protein SS1G_06001 [Sclerotinia sclerotiorum 1980]
 gi|154703781|gb|EDO03520.1| hypothetical protein SS1G_06001 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 936

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 286/965 (29%), Positives = 448/965 (46%), Gaps = 120/965 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE-----KPVYQAV 61
           +R  FL FF+K+ H ++PSSS++P NDPTL+FTN+GM  FK IF G           +  
Sbjct: 15  VRKEFLNFFEKHAHSVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVGKTDDMAQLKRA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK         DLD+VG+ + HH+                 AI +AW+LLTK + LD
Sbjct: 75  VDTQK---------DLDDVGKDSYHHS----------------DAIAMAWELLTKVYGLD 109

Query: 122 QRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ D         EA +LW K +G+  D I+     DNFW M ETGPCGPCS
Sbjct: 110 PDRLYVTYFEGDSENNVPADTEAKELWLK-AGVKEDHILTGNMKDNFWEMGETGPCGPCS 168

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN+VF+QF++Q  +    LP   IDTGMG ER+
Sbjct: 169 EIHYDRIGGGRNAAHLVNQDDPNVLEIWNIVFIQFDRQKDRSLKTLPAKHIDTGMGYERL 228

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSSF 284
            +VLQ+K++NYD D+F  L    ++V          G          +RVI DH+R  +F
Sbjct: 229 VSVLQDKSSNYDTDVFSPLFAKIQEVTQARPYTDKYGKDDTDGIDTAYRVIADHIRLLTF 288

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I+DG +P NEGRGYV+RR++RR   YAR     E       +LPAL  +MG  +PE+++
Sbjct: 289 AISDGGVPNNEGRGYVVRRVLRRGSRYARKYFNAEIGSFFSKILPALVEQMGEQFPEIVK 348

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDI 400
            +  ++E L  E+E F +TLDRG  + +   +   K     L+G   ++LYDT G P D+
Sbjct: 349 KQQDVKEILDEEEEAFARTLDRGEKMFEKYAAQAIKTNTKKLSGADVWRLYDTFGFPEDL 408

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   RG     + +    +E  + +AR  S  +           + +          
Sbjct: 409 TKIMAEERG-----LETDEGEIEIAKEKAREASKSVKEAAHTFAKLDVHQI--------- 454

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   +                   +  V+ I      ++      S +   ++ D+
Sbjct: 455 ------AELDNIGIARTNDDAKFSKGDSTGKVQLIYDGKSFLKSTADLPSDKPFGILLDK 508

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ+ DTG  I DG+        +   G  VH+  ++ G  +    ++   D 
Sbjct: 509 TNFYAEQGGQVFDTGKIIIDGVAEFKVLDTQAYGGYIVHNGYMDYGNFKAGDEVICEYDE 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R+ +  NH+ TH+L+HAL   LG  ++Q GS +  + LRFD +H   +T  ELK IED
Sbjct: 569 LRRQPIRNNHTGTHILNHALREHLGEDINQKGSLVDQEKLRFDFSHKAQVTLPELKKIED 628

Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
           + N  I QN  + ++ +         G  A+ G  Y + VRVVSV              +
Sbjct: 629 SSNSYIKQNCKIYSKDVDLDTAKAIEGVRAVFGETYPNPVRVVSVGVEIDVLLAEPKNPE 688

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------------ 733
               S   CGGTHV  TG I  L IV ES I  GIRRI A TG  A              
Sbjct: 689 WRKVSVEFCGGTHVDQTGIIKDLVIVEESGIAKGIRRIIAYTGDAAHEIQRVASEFGKRI 748

Query: 734 -------HLMGQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
                  H + +++++K+  + L       +++ ++  +  ++ ++    Q    K + +
Sbjct: 749 AALDAMPHGVEKEQEVKATQNDLNHLTISVLTKEDLKKKFTKVQKDVLDEQKKKQKAESK 808

Query: 781 LNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
             ++ ++           + +++ +    +SK +  VM+  + K +   + L G S  + 
Sbjct: 809 TALDTVTAHFADPKNKDSIAYIAQLPISANSKAIAEVMNHFKSKAKEKTVYLFGGSASEG 868

Query: 836 ASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           A V  + V T+      +A   A   ++V+GG  GG  P      G N +K D A+A   
Sbjct: 869 AVVHGVYVGTDAASKGVSAEQWAAAVSEVIGGRSGGKEPTR-TGQGTNADKIDDAVAVAE 927

Query: 894 SFLKK 898
            +  +
Sbjct: 928 KWFAE 932


>gi|281307089|pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Alasa
 gi|281307090|pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Alasa
 gi|281307091|pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Alasa
 gi|281307092|pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Alasa
 gi|281307093|pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Glysa
 gi|281307094|pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Glysa
 gi|281307095|pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Sersa
 gi|281307096|pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Sersa
          Length = 441

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 233/441 (52%), Positives = 307/441 (69%), Gaps = 14/441 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 2   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 61

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW LLT  K F 
Sbjct: 62  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFA 121

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 122 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DT MGLE
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 242 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 300 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 360 KTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 418

Query: 412 GIDIISFNQALEEQRSRARAH 432
            +D   F  A+EEQR RAR  
Sbjct: 419 -VDEAGFEAAMEEQRRRAREA 438


>gi|260187569|ref|ZP_05765043.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
          Length = 819

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 284/842 (33%), Positives = 427/842 (50%), Gaps = 67/842 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKISGL 146
           M  NFSFG YFK  AI+LAW LLT       + LD  R++ TVY +D+EA +LW++++GL
Sbjct: 1   MGRNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGL 60

Query: 147 SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFM 206
            A++I R    DN+WSM   GPCGP SEI++D+G            E  RY+E+WNLVFM
Sbjct: 61  PAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED-RYLEVWNLVFM 119

Query: 207 QFEQQNKQERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           Q E+     +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + ++    +V 
Sbjct: 120 QNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVLDTVARVA 179

Query: 261 GMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
              Y      + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG 
Sbjct: 180 ARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGI 239

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--H 375
              ++  L+  +   MG +YPEL+     I     +E+  F +TL  G  L + V S   
Sbjct: 240 DAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTK 299

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
                +L+G  AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A +  
Sbjct: 300 KSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAAA 358

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
                 +   +      GAT+F G+D LR                         + +  I
Sbjct: 359 RKHAHADLSAYRELVDAGATEFTGFDELRS-----------------------QARILGI 395

Query: 496 VQQGEIVEE--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG----DGIRLQI 543
              G+ V          A  GQ+VE+V D+TP YAE+GGQ+ D G   G    +  R  +
Sbjct: 396 FVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAV 455

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           TDVQK A+ ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG 
Sbjct: 456 TDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGP 515

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           +  Q GS   P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A G
Sbjct: 516 NAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMG 575

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G  Y D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+
Sbjct: 576 AIALFGESYPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRV 631

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-- 781
           EA  G  +  HL  +   +  LAS LKV    V  RV  + E  R  +    + ++    
Sbjct: 632 EAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASVR 691

Query: 782 ---NVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS--GIIMLVGISKEKK 835
                      +I +V  ++  +S  + + +L+S++  ++ K+ S   ++ L+   + + 
Sbjct: 692 AAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQT 751

Query: 836 ASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
               +       D    A DL +  A  +  G GGG+  +AQ  G N    D A+  V S
Sbjct: 752 VPYAVAANPAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVRS 810

Query: 895 FL 896
            +
Sbjct: 811 EI 812


>gi|71033767|ref|XP_766525.1| alanyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68353482|gb|EAN34242.1| alanyl-tRNA synthetase, putative [Theileria parva]
          Length = 1011

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 283/950 (29%), Positives = 452/950 (47%), Gaps = 112/950 (11%)

Query: 2   SNVSS------IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK 55
            +         +R  F+++F    H   PSSS++P NDPTL+F N+GM  FK+I  G+  
Sbjct: 53  MSTDDKVTGDWVRKQFIDYFVSKNHVHWPSSSVLPHNDPTLLFVNAGMNQFKDIIMGKSD 112

Query: 56  PVY-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110
                   + V   QKC+RAGGKHNDL++VG+   H T+FEMLGN+SFG YFK  AI  A
Sbjct: 113 ENSEFGKLKMVCNSQKCIRAGGKHNDLEDVGQDCYHQTYFEMLGNWSFGAYFKPEAISYA 172

Query: 111 WDLLTKEFDLDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           WDLLT  + LD  RLY+T +  D+      E  ++W K   L +++I+   + DNFW MA
Sbjct: 173 WDLLTNVYKLDPSRLYVTYFGGDDSCEPDHETREIWLKF--LPSNRILPFGSKDNFWEMA 230

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPC+EI +D            + +    +E+WN+VFMQ+ +        LPK  +
Sbjct: 231 DTGPCGPCTEIHYDHIGGRDASS-LVNADDPNVVELWNIVFMQYNRSRNGVLERLPKGCV 289

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNN---IVNHRVIVDHL 279
           DTGMGLER+ +VL    +NYD DL   +I    ++      Y+G N    V +RV+ DH+
Sbjct: 290 DTGMGLERLCSVLNNTNSNYDTDLLNDVILYISELLPELESYKGGNSPLDVAYRVVSDHI 349

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL-GYTEPLMMHLLPALCTEMGSAYP 338
           R  S  I+D + P+N+GRGYVLRRI+RRA+ Y R      EP +  L+ ++   +G AYP
Sbjct: 350 RCLSVAISDRVYPSNDGRGYVLRRILRRAVRYCRDYFNTREPFLHRLVRSVSKLLGHAYP 409

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            L+  ++ IE  +  E+  F +TLD+G+     +++   + +++NG  AF LY ++G PL
Sbjct: 410 NLVTERVNIESVVFDEERLFLQTLDKGVEKFKKMVAK-SEVKVINGQDAFLLYQSYGFPL 468

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT---EKIWFSLKEKYGAT 455
           D+   +    G  G+D+I +   L+  + ++ A      +      +++  SL      T
Sbjct: 469 DLTMLMARELG-IGVDVIGYYTELKLHQQKSEARIYTDFNSVESRCDRLLKSLSADRINT 527

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAV--SGQKVE 512
                 +L+    +  D K+       D    V  + + +IV    I++E    S   V 
Sbjct: 528 ------ILQMCNNVYTDDKLKYDWDSSDPVRKVFKAKLLSIVTADSILKELEYDSDDLVC 581

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D+TPFYAE GGQ+ DTG        L++  V K +  +F      E G+LR      
Sbjct: 582 LVTDRTPFYAEGGGQIYDTGYI----NDLEVLRVYKLSGLVFHFCLADESGLLRCGDECE 637

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +DY  R +++ NH+ATH+L+  L  IL     Q GS +  + L+FD ++ + +    +
Sbjct: 638 LKVDYHRRVKVASNHTATHILNFVLRDILEESSYQRGSQLDEEKLKFDYSYGQQLPDNLI 697

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSV----EYEDGG 687
           + +E  + + +    P+ T  +  + A+   G  A    KY + VRVV+V    E   G 
Sbjct: 698 RQVEQRMMEFVRSGAPLRTTEIEYKKALEIPGIRANFDEKYPEVVRVVNVQMGSEDFSGE 757

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS---HLMGQDEKLKS 744
             S+ +CGGTH+++T  I  + +V E  I  G+RR+  +T  + R     L+   ++L  
Sbjct: 758 HTSTEVCGGTHLTNTKTIQDVAVVGEEGISKGVRRLTIVTNDQCRRSRIDLLNYYQRLGD 817

Query: 745 LASFLK--------------------------------------VSQGNVVGRVEEIWEE 766
           L   LK                                      +S+ N++ + EE+ + 
Sbjct: 818 LEKSLKPINFTKDDTREASENASENMSKLTALRGEVEVHKMLPLLSKRNLMKKFEELIDL 877

Query: 767 Y----RKLQLIH---AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                +  Q      AK K    VE L   K   + F+           L++ +D L+  
Sbjct: 878 QVSAGKAHQKRLANIAKIKAVEVVEKLQSQKYDGMEFIEKTSEH--PAVLRAAVDDLEGD 935

Query: 820 IQSG-------------IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++S              + ++            +           A +L 
Sbjct: 936 LKSLNVFVQTVSKTFPQLAVVASSMGNNAVCCRVNSPNASYSALKAANLI 985


>gi|84998104|ref|XP_953773.1| alanyl-tRNA synthetase [Theileria annulata]
 gi|65304770|emb|CAI73095.1| alanyl-tRNA synthetase, putative [Theileria annulata]
          Length = 1024

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 291/952 (30%), Positives = 464/952 (48%), Gaps = 107/952 (11%)

Query: 7    IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
            +R  F+++F    H   PSSS++P NDPTL+F N+GM  FK+I  G+          + V
Sbjct: 82   VRKQFIDYFVSKNHVHWPSSSVLPNNDPTLLFVNAGMNQFKDIIMGKSDENSEFGKLKMV 141

Query: 62   TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
               QKC+RAGGKHNDLD+VG+   H T+FEMLGN+SFG YFKE AI  AWDLLT  + LD
Sbjct: 142  CNSQKCIRAGGKHNDLDDVGQDCYHQTYFEMLGNWSFGAYFKEEAISYAWDLLTNVYKLD 201

Query: 122  QRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              RLY+T +        D E  ++W K   + A +I+   + DNFW MA+TGPCGPC+EI
Sbjct: 202  PNRLYVTYFGGDKSCEVDNETREIWLKF--MPASRILPFGSKDNFWEMADTGPCGPCTEI 259

Query: 176  FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
             +D            + +    +EIWN+VFMQ+ +        LPK  +DTGMGLER+ +
Sbjct: 260  HYDHIGGRDAST-LVNADDPNVVEIWNIVFMQYNRGENGVLERLPKGCVDTGMGLERLCS 318

Query: 236  VLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNN---IVNHRVIVDHLRSSSFLIADGI 290
            VL    +NY+ DL   +IQ   ++      Y+G N    V +RV+ DH+R  S  I+D +
Sbjct: 319  VLNNTNSNYNTDLLNDIIQYIRELLPGFESYKGGNTPLDVAYRVVSDHVRCLSVAISDKV 378

Query: 291  LPANEGRGYVLRRIMRRAMCYARLL-GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
             P+NEGRGYVLRRI+RRA+ Y R      EP +  L+P++   +G+AYP L+  +  IE 
Sbjct: 379  YPSNEGRGYVLRRILRRAVRYCRDYFNTKEPFLYKLVPSVTKLLGNAYPNLLTEQANIES 438

Query: 350  TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
             +  E++ F +TLD+G+     ++S    ++++NG  AF LY ++G PLD+   +    G
Sbjct: 439  IVLDEEKLFLQTLDKGVEKFKKMVSK-SGNKVINGPDAFLLYQSYGFPLDLTMLMARELG 497

Query: 410  LAGIDIISFNQALEEQRSRARAHSLGLGSGTT---EKIWFSLKEKYGATQFIGYDLLRGS 466
            +  +D+  +   L+  + ++ +      +      +K+  SL      T      +L+  
Sbjct: 498  IT-VDVDGYYSELKLHQQKSESRVYTDLNSLESRCDKLLKSLSADRINT------ILKMC 550

Query: 467  KFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAV--SGQKVEVVFDQTPFYAE 523
              +  D K+       D    V  + + + V    ++ E        V +V D+TPFYAE
Sbjct: 551  NNVYTDDKLKYDWDSSDPVAKVYKAKLVSTVTLDSVMSELQCDDDDLVCLVMDRTPFYAE 610

Query: 524  AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
             GGQ+ DTG        L++  V K +  +F      + G+LR      L +DY+ R ++
Sbjct: 611  GGGQIYDTGYI----NDLEVLRVYKMSGLVFHFCLSKKSGVLRCGDEFELKVDYERRVRV 666

Query: 584  SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + NH++TH+L+  L  +L     Q GS +  + L+FD  +++ +    ++ IED + D +
Sbjct: 667  ASNHTSTHILNFVLRDMLDESSYQRGSQLDEEKLKFDYCYNQQLPEDLIRRIEDRMMDFV 726

Query: 644  AQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSV----EYEDGGVHSSALCGGTH 698
                P+ TR +  ++A+   G  A    KY + VRVV+V    E   G   S+ +CGGTH
Sbjct: 727  RSEAPLRTREIEYKNALEIPGIRANFDEKYPEVVRVVNVQLGSEDFSGEHTSTEVCGGTH 786

Query: 699  VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS---HLMGQDEKLKSLASFLK----- 750
            +++T  I  + +V E  I  G+RR+  +T ++ R     L+  +++L+ L   LK     
Sbjct: 787  LTNTKTIQDVAVVGEEGISKGVRRLTLVTNEQCRKSKADLLHYEKRLEELEKNLKPINFT 846

Query: 751  ---------------------------------VSQGNVVGRVEEIWEEY----RKLQLI 773
                                             + + N++ + E++ ++     +  Q  
Sbjct: 847  KDDTREASLNAAENMTRLTALRGEAEVHKMLPLLGKRNLMKKFEQLIDQQVSAGKAHQKR 906

Query: 774  H---AKRKLQLNVEDLSCHKIADVNF----------MSHIISEV--DSKELKSVMDALQK 818
                AK K    VE L   K  +V F          +   + ++  D K L   +  + K
Sbjct: 907  LANIAKMKAVEVVEKLQSQKYDEVEFTEKTSEHPAVLRASVDDLEGDLKSLNVFVQTISK 966

Query: 819  KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
                 I +L         + +          ++A+  A L A  L    G G
Sbjct: 967  TFPQ-IAVLASSVG---INAVCCRVNSPNASYSALKAANLIATQLNLTNGTG 1014


>gi|262341353|ref|YP_003284208.1| alanine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272690|gb|ACY40598.1| alanine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 887

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 295/927 (31%), Positives = 472/927 (50%), Gaps = 78/927 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               SIR TFL FF+K  H+++PS  +   NDP+L F N+GM PFK+ F G  +P Y  +
Sbjct: 1   MKYKSIRDTFLGFFKKKEHKVIPSFPIHSKNDPSLFFINAGMNPFKDYFLGHIQPDYSRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQKC+R  GKHNDL++VG  N HHT FEMLGN+SFG Y ++  I+ AW+LL + +++ 
Sbjct: 61  VNVQKCLRVTGKHNDLEHVGYDNYHHTMFEMLGNWSFGDYSRKETIEWAWELLIQVYNIP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           ++ +YI+V+  D+        E FK WK +  +S + I+     +NFW M  TGPCGPCS
Sbjct: 121 KKNIYISVFIGDKKEGLSMDYETFKYWKTL--ISEENILFFGKKENFWEMGLTGPCGPCS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +++  + IEIWNLVF++F +++  +   L K  +DTGMG
Sbjct: 179 EIHIDLRNEKEKQMLSGKHLVNKKHPKVIEIWNLVFIEFLRKSDGKLEKLTKKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
           LER+  +LQEK ++Y+ D+F  +IQ  ++  G  Y  + +  V+  +I DHLR+  F I+
Sbjct: 239 LERLCMILQEKFSSYETDIFFPIIQNIKESLGKIYKEDFHQKVSIHIIADHLRAIVFSIS 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG+ P+N G GYV+RRI+RRA+ YA R L   EP +   + +L  EM S +PEL++ K  
Sbjct: 299 DGVFPSNNGAGYVIRRILRRAIIYATRFLYKKEPFIYQFVDSLVKEMKSYFPELMEKKEY 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I+  ++ E+  F K +++G   +  ++       ++I++G   FKLYDT+G P+  +  +
Sbjct: 359 IKNVIQEEELSFLKVIEKGNHKIQYIIEKAKKQNEKIIDGTTIFKLYDTYGYPIK-LSKM 417

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK---YGATQFIGYD 461
           L  +    ID   F++ L EQ++R+            +K W  +      +    F+GYD
Sbjct: 418 LVEKNNLLIDEKLFHEKLLEQKNRS----KKENHTIEKKDWIEVHNHQFIHENVNFVGYD 473

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
           +++    + + RKV                            +       E+VF +TPFY
Sbjct: 474 MIKCDVLILKYRKVE--------------------------NKLEKTHYYELVFSKTPFY 507

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            E GGQLGDTG    +   + I + +K+   I       ++       S    +D   R 
Sbjct: 508 PEGGGQLGDTGFIKNETDEVYIFNTKKENSIIIHS---AKKLPSDVFSSFKAIVDKNRRL 564

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH++THLLH +L  ILG+H+ Q GS +  D LRFD +H + IT  EL  IE+ V +
Sbjct: 565 EIEKNHTSTHLLHFSLKKILGNHIQQKGSYVGEDYLRFDFSHYQKITVEELYKIENLVQE 624

Query: 642 IIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           +I  +L +  +  +             +     KY   VRV++         SS LC GT
Sbjct: 625 LIFSDLILEEKRFSSLQEAEKNISFYKSETFENKYKQEVRVITFG------KSSELCIGT 678

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV  TG I +  I+SESSI  GIRRI+AIT ++A  +L    ++ +S    +K  +    
Sbjct: 679 HVKHTGLIQIFKIISESSISYGIRRIKAITSKKAVQYLKSIHDQYQSFKKMMKYPESPFK 738

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNV-----EDLSCHKIADVNFM--SHIISEVDSKELK 810
             +  + +E ++L+   ++ +LQ  +       L   + + +N++    +  E D   +K
Sbjct: 739 SFLI-LQKENQELKKKISEIRLQQMITLKKEYSLKAIQFSSINYICDIDLSKEKDINLIK 797

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
            ++  L+ +I S + M+VG  KE K    + I  +       +A  +       + G   
Sbjct: 798 KIVLDLRNEI-SNLFMIVGFIKENKPVIFISISDSIIQSKNIHAHKIICKMTSYIHGKYW 856

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASF 895
            G+   A + G   N     +    + 
Sbjct: 857 -GKSFFATAIGTEKNGLSLVLKDAIAI 882


>gi|291320346|ref|YP_003515608.1| alanyl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752679|emb|CBH40652.1| Alanyl tRNA synthetase (Alanine tRNA ligase) (ALARS) [Mycoplasma
           agalactiae]
          Length = 880

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 286/917 (31%), Positives = 448/917 (48%), Gaps = 96/917 (10%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+FF+   H ++ S SLIP NDP+L++ NSG+   KN F+G++ P  
Sbjct: 1   MKKLTSTEIRQKWLDFFKSKDHLVIESKSLIPVNDPSLLWINSGVATLKNYFSGKKVPPA 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +T  QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI  A + L    
Sbjct: 61  FRLTNSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAFAKEFLVNVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++D  +LY T Y+ED EA   W + +G+    +I  T + NFW +  +GPCGPC+EIF+D
Sbjct: 117 EMDLEKLYFTYYEEDLEAKNYWLE-NGVDESHLISGTKDTNFWDLG-SGPCGPCTEIFYD 174

Query: 179 QGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +GE        L  +  E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+
Sbjct: 175 RGEKYDSRGLDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYIELKQKNIDTGAGLERLAS 234

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSF 284
           ++Q+   NYD DLF ++I+  E+ +  KY   N             N ++I DH+R+   
Sbjct: 235 IMQDVPTNYDSDLFINIIREIEKYSPYKYVIENYFVKDAEQNEINTNFKIIADHIRTVVN 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            IADG   +N GRGY++RR++RR+      LG  +  +  L+  +   +   Y E     
Sbjct: 295 AIADGAKISNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVHVVKASLPYEYDEKD--- 351

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             + E ++ E+  F KT+++G VLL+  L    K +I +G VAF L +T+G P+++  +I
Sbjct: 352 --VIEQIKEEELLFSKTIEKGKVLLESFLDS--KSKIFDGAVAFNLLETYGFPIELTAEI 407

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLL 463
           L  +G   +D+ +F       + +    S G  +   +K+  SL         F+GY  L
Sbjct: 408 LHQKG-ISVDMDAFE----LAKEKHALASKGGKASGMDKVINSLALIDKKMDNFVGYSEL 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                    ++ V  ++ +   VE   +G    V+ + TPFYA 
Sbjct: 463 -----------------------NATTKVLKLLDEENEVEAFETG--GYVLLETTPFYAT 497

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  D G  I    +++I DV K     F +H     G +    S+   +D   R  L
Sbjct: 498 SGGQRHDKGFIIQGENKIKIVDVFKDK---FGNHIHFVEGKMNIHESVSCYVDPTIRIGL 554

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHS THLL  AL  +LGSH+ Q GS    + L FD    +  +  ++K++ED V   I
Sbjct: 555 ERNHSGTHLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAVEDLVRSYI 614

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           ++++     I   + A   GA   L        R + V     G  +S LCGGTH+S+T 
Sbjct: 615 SKSIDREYIITTVDKAKEMGAIMTLEEGEYMDPRAIRVVRF--GDITSDLCGGTHLSNTS 672

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLK-SLASFLK----------- 750
           ++    I +    +AG+ RI AI+  +    +L   ++KL   LA+ +K           
Sbjct: 673 KLENFKITNVEKKQAGVFRIRAISSSKLVNEYLTDVNKKLNDELATIIKKIKELKSDYSA 732

Query: 751 -------VSQGNVVGRVEEIWEEYRKLQLIHAK--RKLQLNVEDLSCHKIADVNFMSHII 801
                       +   + +I EE R+      K    ++ + E +   KI D +   ++ 
Sbjct: 733 PVVNENESDIETLNANIIKIIEECREAYKQLLKDHSNVEFDYETVKFVKINDFDVYINL- 791

Query: 802 SEVDSKELKSVMDALQKKIQSG-IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            E D+ ++K +  +++ K QSG  I +VG   E +  + I          +A  + +  A
Sbjct: 792 -EADASDVKVIAASVRDKFQSGKTIAIVGSRNENELLLAIA-----TRVIDANKMFKKIA 845

Query: 861 KVLGGGGGGGRPHMAQS 877
             L  G GGG P +A  
Sbjct: 846 SEL-DGRGGGAPILAMG 861


>gi|302666339|ref|XP_003024770.1| hypothetical protein TRV_01052 [Trichophyton verrucosum HKI 0517]
 gi|291188840|gb|EFE44159.1| hypothetical protein TRV_01052 [Trichophyton verrucosum HKI 0517]
          Length = 925

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 272/962 (28%), Positives = 429/962 (44%), Gaps = 132/962 (13%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F+KNGH                               G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTF-----------------------------GTVDPNSDFAQLKRA 53

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK         DLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 54  HNSQK---------DLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 104

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA  +W+   G+  D I+     DNFW M + GPCGPCS
Sbjct: 105 PDRLYVTYFEGNEAAGVGPDIEARDIWRS-VGVKDDHILTGDMKDNFWEMGDQGPCGPCS 163

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+
Sbjct: 164 EIHYDRI-GGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 222

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L  A + +TG +                 +RV+ DHLR+ +F
Sbjct: 223 VSILQNKSSNYDTDVFTPLFNAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTF 282

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ +
Sbjct: 283 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKR 342

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG    +             L G   ++LYDT G P+D+
Sbjct: 343 KQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLPGADVWRLYDTFGFPVDL 402

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L   D           R +A+  S G     ++ +  ++            
Sbjct: 403 TRLMAEERQLTIDDAEFEEA-----RLKAKEASKGQAKTASDLLKLTVH----------- 446

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   ++++               + + +KAI    ++++      + +++ ++ D+
Sbjct: 447 ----TLSTLEKNGVPKTDDDAKFGKGNIVANIKAICHGKDVIDSTKDIPANEQIGIILDK 502

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE GGQ  DTG  + DG         +   G  +H   ++ G      S++   D 
Sbjct: 503 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYGGYVLHTGFIKYGNFSVNDSVIAEYDE 562

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   I+ ++L+ IE 
Sbjct: 563 LRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEA 622

Query: 638 NVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YED 685
              D I QN  V    +        +G  A+ G  Y D VRVVSV               
Sbjct: 623 KSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPR 682

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--------- 736
               S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A              
Sbjct: 683 WEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRVAREFGERL 742

Query: 737 ----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQ 780
                      +D ++KSL   L     + V + +      +I ++    Q    K +++
Sbjct: 743 NRFEKMPAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVK 802

Query: 781 LNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             ++ +S          + +  +    + K +   ++ ++ K+    + +       K +
Sbjct: 803 TAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAADA-SKVA 861

Query: 838 VLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               VT DL     +A + A   + ++ GG  GG+  +A   G   NK D+A+     +L
Sbjct: 862 HGCYVTPDLTTKGASANEWASAVSSII-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYL 920

Query: 897 KK 898
           +K
Sbjct: 921 EK 922


>gi|148377682|ref|YP_001256558.1| alanyl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|205830150|sp|A5IYK5|SYA_MYCAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148291728|emb|CAL59114.1| Alanyl tRNA synthetase (Alanine tRNA ligase) (ALARS) [Mycoplasma
           agalactiae PG2]
          Length = 880

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 278/919 (30%), Positives = 448/919 (48%), Gaps = 100/919 (10%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+FF+   H ++ S SLIP ND +L++ NSG+   KN F+G++ P  
Sbjct: 1   MKKLTSTEIRQKWLDFFESKNHLVIESKSLIPVNDSSLLWINSGVATLKNYFSGKKVPPA 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +T  QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI  A + L    
Sbjct: 61  FRLTNSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAYAKEFLVNVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++D  +LY T Y+ED EA   W + +G+    +I  T + NFW +  +GPCGPC+EIF+D
Sbjct: 117 EMDFEKLYFTYYEEDLEAKNYWLE-NGVDESHLISGTRDTNFWDLG-SGPCGPCTEIFYD 174

Query: 179 QGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +GE        L  +  E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+
Sbjct: 175 RGEKYDRRGLDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYTELKQKNIDTGAGLERLAS 234

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSF 284
           ++Q+   NYD DLF ++I+  E+ +  KY   N             N ++I DH+R+   
Sbjct: 235 IMQDVPTNYDSDLFINIIREIEKYSPYKYVIENYFAKDEHQGEINTNFKIIADHIRTVVN 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            IADG   +N GRGY++RR++RR+      LG  +  +  L+  +   +   Y E     
Sbjct: 295 AIADGAKVSNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVKVVKDSLPYEYNEKD--- 351

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             + + ++ E+  F KT+++G +LL+  L +  ++++ +G VAF L +T+G P+++  +I
Sbjct: 352 --VIDAIKEEELLFSKTIEKGKILLESFLDN--ENKVFDGAVAFNLLETYGFPIELTAEI 407

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLL 463
           L  +G   +D+ +F       + +    S G  +   +K+  SL         F+GY  L
Sbjct: 408 LHQKG-ISVDMDAFE----LAKEKHALASKGGKATGMDKVINSLALIDKKMDNFVGYSEL 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                    +S V  +  +   VE   +G    V+ + TPFYA 
Sbjct: 463 -----------------------SANSKVLKLFDEENEVEGFETG--GYVLLETTPFYAT 497

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  D G  I    +++I DV K     F +H     G +     +   +D   R  L
Sbjct: 498 SGGQRHDKGFIIQGENKIKIIDVFKDK---FGNHIHFVEGKMNNHEPVSSFVDPNIRIGL 554

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHS THLL  AL  +LGSH+ Q GS    + L FD    +  +  ++K++ED V   I
Sbjct: 555 ERNHSGTHLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAVEDLVRSYI 614

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +++         + A   GA   L        R + V     G  +S LCGGTH+S+T 
Sbjct: 615 TKSIDREYITTTVDKAREMGAIMTLEEGEYMDPRAIRVVRF--GDITSDLCGGTHLSNTS 672

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLK-SLASFLK----------- 750
           ++    I +    +AG+ RI AI+  +    +L   ++KL   LA+ +K           
Sbjct: 673 KLESFKITNVEKKQAGVFRIRAISSSKLVNEYLSKVNKKLNEELATIIKKIKELKSDYVA 732

Query: 751 -----------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
                          ++  R++E+ E Y++L    +   L+ + E +   KI D +   +
Sbjct: 733 PAINENEPDIETLNASINKRIDELREVYKQLLKESSN--LEFDYETVKFDKIKDYDVYIN 790

Query: 800 IISEVDSKELKSVMDALQKKIQSG-IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           +  +VD+  +K +  +++ K Q G  + ++G   E +  + I          +A  + + 
Sbjct: 791 L--DVDASAVKLIAASIRDKFQLGKTVAIIGSKNENELLLAIA-----TRAIDANKMFKK 843

Query: 859 SAKVLGGGGGGGRPHMAQS 877
            A  L  G GGG P +A  
Sbjct: 844 LASELN-GRGGGAPILAMG 861


>gi|297489033|ref|XP_002697304.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial-like [Bos
           taurus]
 gi|296474486|gb|DAA16601.1| alanyl-tRNA synthetase 2, mitochondrial-like [Bos taurus]
          Length = 983

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 272/951 (28%), Positives = 415/951 (43%), Gaps = 91/951 (9%)

Query: 4   VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
            +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      
Sbjct: 37  AAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAG 96

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTK 116
           ++ V   QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+
Sbjct: 97  FRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ 156

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + + + RL+++ +  D         E+  +W  + G+ A +++     +NFW M +TGP
Sbjct: 157 VYGIPEDRLWVSYFGGDPKAGLGPDLESRDIWLSL-GVPASRVLSFGPEENFWEMGDTGP 215

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D                 + +E+WNLVFMQ  ++       LP+  +DTGM
Sbjct: 216 CGPCTEIHYDL---------AGGAGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGM 266

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHL 279
           GLER+  VLQ + + YD DLF  L+ A  Q  G                   +RV+ DH+
Sbjct: 267 GLERLVAVLQGRLSTYDTDLFSPLLDAIHQGCGAPPYSGRIGAADEGRTDTAYRVVADHI 326

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338
           R+ S  IADG+ P   G   VLRRI+RRA+ ++   L      +  L+P +   +G AYP
Sbjct: 327 RTLSVCIADGVSPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAYP 386

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGL 396
           EL ++   I   +  ++  F  +L RG  +++  L  LG  ++   +VA+   L    GL
Sbjct: 387 ELRRSSAQIASLVSEDEAAFLASLQRGRRVIERTLKRLGPSDVFPAEVAWSLSLSGNLGL 446

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+++ +L  +G+          A EE + RA         G    +        G  Q
Sbjct: 447 PLDLVELMLEEKGVPLDTAGLERLAQEEAQHRALQAEPVQEQGLRLNV-----HALGELQ 501

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVF 515
             G                  Q           + V  +  + G  V     GQ   ++ 
Sbjct: 502 RRG----VPPTDDSPKYSYSLQPGGSYKFGTCEAQVLQLYTEDGTAVASIGDGQHCGLLL 557

Query: 516 DQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  D G  +      +     + +  G F+ H +V    LR    + L 
Sbjct: 558 DKTNFYAEQGGQASDRGYLVLVGQQDVLFPVARAQVCGGFILHEVVAPERLRVGDQVQLH 617

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   R      H+A HLL+ AL  +LG    Q GS + P+ LRFDV    P+T  +L++
Sbjct: 618 VDEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERLRFDVATQAPLTPEQLRA 677

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYE 684
           +E  V   + ++  V    +             L   Y D VRV          +    +
Sbjct: 678 VEVTVQKAVGRDEAVYMEEVALARTAHVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQ 737

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S  LC GTH+  TG I  L I+ E  +  GI R+ A+ G++A+          + 
Sbjct: 738 AALHTSVELCCGTHLLRTGAIGDLVIIGERQLVKGITRLLAVNGEQAQQAREVGQRLAQE 797

Query: 745 L----------------ASFLKVSQGNVVGRVE----------EIWEEYRKLQLIH--AK 776
           +                A  L    G +   V+          E+    + LQ     A 
Sbjct: 798 VEAAAARLSQGSRHVAEAHRLSKDMGRLTDAVDTATMPQWQRRELQATLKALQRRANTAV 857

Query: 777 RKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           RKL++        +          +   +S      L  V   L  +     ++L+    
Sbjct: 858 RKLEMGQVRGGAEEKHEREEKGKLVVDSVSAECVSILSWVCRXLCTQAPGTSVLLLSPQP 917

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
             K      V +     F A   A      +GG   G R  +AQ  G   +
Sbjct: 918 LGKVLCACQVAQSATPAFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTAD 967


>gi|323331402|gb|EGA72819.1| Ala1p [Saccharomyces cerevisiae AWRI796]
          Length = 648

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 225/656 (34%), Positives = 339/656 (51%), Gaps = 48/656 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK   G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKN-VGVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRI-GGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +     +   + + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E   A  
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSELNDA-- 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                           +           +  V   +  +      V+E    G+K  ++ 
Sbjct: 485 ----------------KVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  DTG  + D       +  +   G   H   +E G L     ++ + 
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASF 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ E
Sbjct: 589 DELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEE 644


>gi|242556759|pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
           Synthetase In Complex With L-Serine: Re-Refined
          Length = 464

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 209/461 (45%), Positives = 296/461 (64%), Gaps = 14/461 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+  T
Sbjct: 3   SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 62

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   L +
Sbjct: 63  SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +DEEA+++W +  G+ +++I R+   DNFW M + GPCGP SEI+ D+GE 
Sbjct: 123 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 182

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G         ERY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ K +
Sbjct: 183 YEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 234

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ID+   LIQ  E+V+G KY  +    V  RVI DHLR+ +F I+DG++P+NEGRGYV
Sbjct: 235 NFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 294

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRAM +   LG   P +   +  +   M   YPEL  ++  ++  ++ E++RF K
Sbjct: 295 IRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIK 354

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G+  +  V+        + L+G   F  YDT+G P+D++ +I   +GL GID+  F
Sbjct: 355 TLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 413

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
              LEEQR RAR     + +   + ++  LKE    + F+G
Sbjct: 414 QCELEEQRERARK-HFKVEAKKVKPVYSHLKELGKTSAFVG 453


>gi|60594334|pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With Atp And Magnesium
 gi|60594335|pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With Atp And Magnesium
 gi|60594336|pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With L-Alanine
 gi|60594337|pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With L-Alanine
 gi|60594338|pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
           Trna Synthetase In Complex Wtih Glycine
 gi|60594346|pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
           Synthetase In Complex With L-Serine
          Length = 465

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 209/461 (45%), Positives = 296/461 (64%), Gaps = 14/461 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+  T
Sbjct: 4   SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   L +
Sbjct: 64  SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +DEEA+++W +  G+ +++I R+   DNFW M + GPCGP SEI+ D+GE 
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G         ERY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ K +
Sbjct: 184 YEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ID+   LIQ  E+V+G KY  +    V  RVI DHLR+ +F I+DG++P+NEGRGYV
Sbjct: 236 NFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRAM +   LG   P +   +  +   M   YPEL  ++  ++  ++ E++RF K
Sbjct: 296 IRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIK 355

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G+  +  V+        + L+G   F  YDT+G P+D++ +I   +GL GID+  F
Sbjct: 356 TLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
              LEEQR RAR     + +   + ++  LKE    + F+G
Sbjct: 415 QCELEEQRERARK-HFKVEAKKVKPVYSHLKELGKTSAFVG 454


>gi|291533808|emb|CBL06921.1| alanyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 637

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 249/669 (37%), Positives = 374/669 (55%), Gaps = 43/669 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  +L+FF KNGH  LPS+SLIP +DP+L+   +GM PFK  FTG+  P    +
Sbjct: 1   MSGKELRRRYLDFFVKNGHLELPSASLIPKDDPSLLMIGAGMAPFKAYFTGKMTPPCTRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVR G    D++NVGRT RHHT+FEMLGNFSFG YFK  AI+ AW+ LT E +L 
Sbjct: 61  TTSQRCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKYDAIKWAWEFLTGELELP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+ T+Y +DEEA+K+W   + ++ + I+++   DNFW +  +GPCGP SEIF D GE
Sbjct: 117 KDKLWATIYPDDEEAYKIWTTETDINPEHIVKL--EDNFWEIG-SGPCGPDSEIFIDLGE 173

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWNLVF QF++    +   L   +IDTG GLER+A+VLQ 
Sbjct: 174 ERGCGSPTCGVGCDCDRYLEIWNLVFTQFDRTEDGKYNPLVHKNIDTGCGLERLASVLQN 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K +N++ DL   +I+ + +V   +Y  +    ++ +VI DH RS SF++ DGILP+NEGR
Sbjct: 234 KPSNFETDLMFPIIEYASKVANKEYGKDKETDISLKVIADHARSISFMVMDGILPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ +AR+LG  +  +   +  +       Y EL   K  I++ +  E++R
Sbjct: 294 GYVLRRLLRRAVRHARMLGIEDKFLAGAVDVVDEIYSGVYDELTNRKDYIKKVISLEEDR 353

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL +G+ LL+  +  L      +L+G+V FKLYDT+G P ++  +IL       +D 
Sbjct: 354 FATTLTQGMDLLNAEVEKLKAENKTVLDGEVGFKLYDTYGFPWELTDEILHE-NHMTLDK 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F++A++EQR+RAR                                    +    D + 
Sbjct: 413 EAFDKAMDEQRTRARNARG-----------------------------ENKRMDIPDLRD 443

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I +  +       G +  ++ D TPFYAE GGQ GD G   
Sbjct: 444 SNIGELKVDETARQAKIVCIWKDAKTTNSLEDGDEAGLILDVTPFYAEGGGQEGDIGSLK 503

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    Q+ D +K  +G   +   V  G L    ++ +T+D +N+   + NH+ATHLL  
Sbjct: 504 TDMGNAQVIDTKKLPDGSVYNIVHVTEGSLHVGDTVEITVDMKNKLASARNHTATHLLQA 563

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G H++Q GS +    LRFD +  +PI++ +L+ +E+ VN  I     V    MN
Sbjct: 564 ALKRVVGDHINQAGSAVNAHHLRFDFSSFEPISAEQLQQVEEMVNAEILTGKDVEISHMN 623

Query: 656 REDAIASGA 664
           +EDA  S  
Sbjct: 624 QEDAKKSWC 632


>gi|126310118|ref|XP_001367753.1| PREDICTED: similar to alanyl-tRNA synthetase like [Monodelphis
           domestica]
          Length = 1109

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 267/909 (29%), Positives = 428/909 (47%), Gaps = 86/909 (9%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
           + S IRT FL FF+ ++GH+L+PS+S++P +DP L+F N+GM  FK IF G   P     
Sbjct: 71  SASVIRTAFLHFFRDRHGHQLVPSASVMPRSDPGLLFVNAGMNQFKPIFLGTVDPRSEMA 130

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLT 115
            ++ V   QKCVR GG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT
Sbjct: 131 RFRRVANSQKCVRTGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLT 190

Query: 116 KEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
             +++ Q RL++T +          D E+  +W  + G+ + +++    ++NFW M E G
Sbjct: 191 HIYEIPQDRLWVTYFGGNPPEGLAPDYESRDIWLSL-GVPSSRVLSFGPSENFWEMGEIG 249

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPC+EI +D                 + +E+WNLVFMQ+ ++      +LP+  +DTG
Sbjct: 250 PCGPCTEIHYDLS---------GGVGPPQLVELWNLVFMQYNREADGSLQLLPQRHVDTG 300

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDH 278
           MGLER+  VLQ K + YD DLF  L+ A +Q                 +  + +RV+ DH
Sbjct: 301 MGLERLVAVLQNKRSTYDTDLFSPLLTAIQQGCRAPPYQGQVGKADGGHTDMAYRVVADH 360

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337
           +R+ S  +ADG+ P   G   VLR+I+RRA+ ++   L      +  L+P +   +G AY
Sbjct: 361 IRTLSICMADGVYPGMSGASLVLRQILRRAIRFSSEVLQAPPGFLSSLVPIVVETLGDAY 420

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +    I   +  E+  F  +L+RG  ++D  L  LG   +   +VA+ L    GLP
Sbjct: 421 PELQKNTTQITSLVAEEETAFLSSLERGRRVIDRTLQQLGPSHLFPAEVAWSLSGNLGLP 480

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           LD++  +L  +G+          A EE + R++A           ++      +      
Sbjct: 481 LDLVGLMLEEKGVQLDSAGLEQLAQEEAQRRSQAQQAKPAKKAELRLDIHALSQLQR--- 537

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFD 516
                                           + +  +    G   +    GQ+  ++ D
Sbjct: 538 ----QGVPPTDDSSKYNYSLLPNGSYEFGACEAEIIQLYTLDGAATDSVGGGQRCGLLLD 593

Query: 517 QTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ  D G  I      +    +  +  G F+ H ++    L+    + L +
Sbjct: 594 KTNFYAEQGGQACDRGYLICKGQQDVLFPVIGAQIYGGFILHEVIALETLKVGDQVQLHV 653

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R      H+ATHLL  AL   LG +  Q GS ++P+ LRFDV    P+TS +L+++
Sbjct: 654 DEEWRLGCMKKHTATHLLSWALRQELGPNTQQCGSHLSPERLRFDVATLAPLTSEQLQAV 713

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYED 685
           E+ +   + Q+ PV    +  E          L   Y D VRV          ++   + 
Sbjct: 714 EETIRVAVGQDKPVYMAEVALELTTQIPGLRSLDEVYPDPVRVVSVGVPVAIALAPTSQA 773

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKL 742
               S  LC GTH+  TG I  L IV E  +  GI R+ A+TG+   +AR       +++
Sbjct: 774 ALQTSVELCCGTHLLRTGAIGDLTIVGEKPLSKGIVRLVAVTGEQAQQARDVGQNLAQEV 833

Query: 743 KSLASFLKVSQGNVVG------RVEEIWE----------EYRKLQLIHAKR--------- 777
           ++ ++ L     NVV        V  + +          + R+LQ I  +          
Sbjct: 834 EAASARLHQGSQNVVEAQHLSKAVGRLSDTVDTAVMPQWQRRELQAILKRLQRRANTAIR 893

Query: 778 KLQLNVEDLSCHKIADVNFMS-HIISEVDSKELK---SVMDALQKKIQSGIIMLVGISKE 833
           KL++ +      +I + + +   I+  V ++ L     V+  L +++    ++L+     
Sbjct: 894 KLEIGLATAKSREILEKHPVGPFIVDTVPTESLSLLVKVVKQLCEQVPGASVLLLSPQAP 953

Query: 834 KKASVLIVV 842
            K      V
Sbjct: 954 GKVLCACQV 962


>gi|39938791|ref|NP_950557.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|81565108|sp|Q6YQR8|SYA_ONYPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|39721900|dbj|BAD04390.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 864

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 274/934 (29%), Positives = 433/934 (46%), Gaps = 110/934 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L+FF    H +  SSSLIP N+  L++ N+G+ P K  F G + P ++ +
Sbjct: 1   MTSFEIRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQTPPFRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T VQKC+R     ND+ NVG+T+RHHTFFEMLGNFS G YFK+ AI  A++LLT  K F 
Sbjct: 61  TNVQKCIRT----NDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFA 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT + +D++ ++ W  + G+  + +I +    NFW +   GP GPC+EIFFD+
Sbjct: 117 FPLEKLYITYFFQDQDTYQYWLDL-GVEKNHLIPL--KSNFWQIGP-GPSGPCTEIFFDR 172

Query: 180 GECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERM 233
           G+              E +R+IEIWN+VF Q+    K   ++   LP  +IDTG GLER+
Sbjct: 173 GKTFDPRNKELIIQDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERL 232

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ    N++ DLF  LI+A E++T +KY G    + ++I DHL++  F I DG +  
Sbjct: 233 ACILQNTKTNFETDLFFPLIKALEKMTQIKYTGQE--SFKIIADHLKTLVFAINDGAVLT 290

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NE RGYVL++++RRA    + LG  +P +  L+P     M   Y EL   + +I + L  
Sbjct: 291 NEKRGYVLKKLLRRAANEGKKLGLDKPFLHQLVPPTAAMMKDFYKELCTNQEIIAKVLLQ 350

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ++  F +TL          L+       L+G   FKLYDT+G+P D++ D    + +   
Sbjct: 351 QENIFEQTLKTAEKTFLQHLTQ----NTLSGQNFFKLYDTYGIPEDLILDYAKKKNITT- 405

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + L + ++ ++ +         ++   S  +    ++FIGY             
Sbjct: 406 DYQKFQELLHDHQNLSKQNQTSQIHMNKQE--ESFLQFLTPSEFIGYTNF---------- 453

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  +  +G             +V ++TPFYA  GGQ+ D G 
Sbjct: 454 -------------TCKTKVIKVFDKG-------------IVLEKTPFYANMGGQIEDEGW 487

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +        K  +          +G       +   I+   R Q+S +H+ATHLL
Sbjct: 488 IDNTKVT-------KITKLPNGQILHEVQGNFCEGQEVYACIEKTKRNQISYHHTATHLL 540

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
              L   LGSH+ + GS +    LR+D  H + IT   L  IE  VN +I +++PV    
Sbjct: 541 EAVLQKQLGSHLKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKSVPVKIEQ 600

Query: 654 MNREDAIASGAA---ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           ++  DA    A         KY D+VR+VS++       S  LCGGTH ++T ++    I
Sbjct: 601 LSIPDAQKKYATLLEQNQKAKYKDKVRIVSIDTF-----SVDLCGGTHATNTKDLEHFTI 655

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKV-SQGNVVGRVEEI-- 763
           +S  SI +GI RIEA+     +  L  +       L  L    K     N++  V+    
Sbjct: 656 LSCESISSGIYRIEAVCNNNCQESLNAKLVPYQNDLHQLTQKAKSLQTQNLIFDVKNFPP 715

Query: 764 -----------WEEYRKLQLIH---AKRKLQLNVEDLSCHKIA------DVNFMSHIISE 803
                       +  +  Q       K+ L+ + +++   +            M  I  E
Sbjct: 716 ITQSYQDILNYQKHIKAQQQALVLFEKKVLEYHQKNMVQAESNFLPPQITKKMMLTIEEE 775

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              + LK  M+ +  K    ++ L  +  EK   +            +A +L + +  ++
Sbjct: 776 KPLEVLKFFMNHIFDKYHLEVLFLSYVQPEKIVFLC------KSKTLHAGNLIKEAVSLV 829

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG   +AQ G       +Q +  V + L+
Sbjct: 830 C-GSGGGNASLAQGGTKKTKNLEQVLNFVKTKLE 862


>gi|218516688|ref|ZP_03513528.1| alanyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 588

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 347/614 (56%), Positives = 434/614 (70%), Gaps = 27/614 (4%)

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDLDN G T  H TFFEMLGNFSFG YFKE AI+LAW L+T+ F L + RL 
Sbjct: 1   CVRAGGKHNDLDNFGYTACHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGLPKHRLL 60

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQGE + GG
Sbjct: 61  VTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQGENVWGG 120

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
            PGS+ E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ   + +D
Sbjct: 121 PPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQGVQSVFD 180

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
            DLF+ L  A E   G+K       +HRVI DHLRSS+FLIADG+LP+NEGRGYVLRRIM
Sbjct: 181 TDLFRTLTGAIEDAVGVK--AEGSASHRVIADHLRSSAFLIADGVLPSNEGRGYVLRRIM 238

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF KTL+RG
Sbjct: 239 RRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFRKTLERG 298

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR   G+DI  F  A++ Q
Sbjct: 299 LSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFTDAMQRQ 357

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           ++ AR+H  G G   TE +WF L+EK+GAT+F+GYD                       T
Sbjct: 358 KAEARSHWAGSGEKATETVWFELREKHGATEFLGYD-----------------------T 394

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
                +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG    D  +++I+D
Sbjct: 395 EAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHGKIEISD 454

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
            QKK EG+FVH   V  G  +T  ++VLT+D+  R +L  NHSATHLLH AL  +LG+HV
Sbjct: 455 TQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALREVLGTHV 514

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P+ LRFDV+H KP+T+ ELK +E+  N+I+ QN PV TR+M+ +DAIA GA 
Sbjct: 515 AQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDAIAEGAM 574

Query: 666 ALLGTKYNDRVRVV 679
           AL G KY D VRVV
Sbjct: 575 ALFGEKYGDEVRVV 588


>gi|152002558|dbj|BAF73582.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W]
          Length = 864

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 277/935 (29%), Positives = 435/935 (46%), Gaps = 112/935 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L+FF    H +  SSSLIP N+  L++ N+G+ P K  F G +KP ++ +
Sbjct: 1   MTSFEIRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQKPPFRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T VQKC+R     ND+ NVG+T+RHHTFFEMLGNFS G YFK+ AI  A++LLT  K F 
Sbjct: 61  TNVQKCIRT----NDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFA 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT + +D++ ++ W  + G+  + +I +   +NFW +   GP GPC+EIFFD+
Sbjct: 117 FPLEKLYITYFFQDQDTYQYWLDL-GVEKNHLIPL--KNNFWQIGP-GPSGPCTEIFFDR 172

Query: 180 GECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERM 233
           G+              E +R+IEIWN+VF Q+    K   ++   LP  +IDTG GLER+
Sbjct: 173 GKTFDSRNKELIIQDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERL 232

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ    N++ DLF  LI+A E++T +KY G    N ++I DHL++  F I DG +  
Sbjct: 233 ACILQNTKTNFETDLFFPLIKALEKMTQIKYTGQE--NFKIIADHLKTLVFAINDGAVLT 290

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NE RGYVL++++RRA    + LG  +P +  L+P     M   Y EL   + +I + L  
Sbjct: 291 NEKRGYVLKKLLRRAANEGKKLGLDKPFLHQLVPPTVAMMKDFYKELCTNQEMIAKVLLQ 350

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ++  F +TL          L+       L+G   FKLYDT+G+P D++ D    + +   
Sbjct: 351 QENIFEQTLKTAEKTFLQHLTQ----NTLSGKNFFKLYDTYGIPEDLILDYAKKKNITT- 405

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + L + ++ ++ +         ++  F   +    ++FIGY             
Sbjct: 406 DYQKFQELLHDHQNLSKQNQTSQTHMNKQEEAF--LQFLTPSEFIGYTNF---------- 453

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  +  +G             +V ++TPFYA  GGQ+ D G 
Sbjct: 454 -------------TCKTKVIKVFDKG-------------IVLEKTPFYANMGGQIEDEGW 487

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +        K  +          +G       +   ID   R Q+S +H+ATHLL
Sbjct: 488 IDNTKVT-------KITKLPNGQILHEVQGKFCEGQEVYACIDKTKRNQISYHHTATHLL 540

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
              L   LGSH+ + GS +    LR+D  H + IT   L  IE  VN +I +++PV    
Sbjct: 541 EAVLQKQLGSHLKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKSVPVKIEQ 600

Query: 654 MNREDAIASGAA---ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           ++  DA    A         KY D+VR+VS++       S  LCGGTH ++T ++    I
Sbjct: 601 LSISDAQKKYATLLEKNQKAKYKDKVRIVSIDTF-----SVDLCGGTHATNTKDLEHFTI 655

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKV--------------- 751
           +S  SI +GI RIEA+     +  L  +       L  L    K                
Sbjct: 656 LSCESISSGIYRIEAVCNNNCQESLNAKLFPYQNDLHQLTQKAKSLQTQNLIFDVKSFPP 715

Query: 752 ---SQGNVVGRVEEIWEEYRKL---QLIHA---KRKLQLNVEDLSCHKIADVNFMSHIIS 802
              S  +++   + I  + + L   +       ++K+     +    +I     M  I  
Sbjct: 716 ITQSYQDILNYQKHIKAQQQALVLFEKKVLEYHQKKMVQAESNFLPPQITK-KMMLTIEE 774

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           E   + LK  M+ +  K    ++ L  +  EK   +            +A +L + +  +
Sbjct: 775 EKHLEVLKFFMNHIFDKYHLEVLFLSYVQPEKIVFLC------KSKTLHAGNLIKEAVSL 828

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +  G GGG   +AQ G       +Q +  V + L+
Sbjct: 829 VC-GSGGGNASLAQGGTKKTKNLEQVLNFVKTKLE 862


>gi|281345697|gb|EFB21281.1| hypothetical protein PANDA_002397 [Ailuropoda melanoleuca]
          Length = 974

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 268/951 (28%), Positives = 416/951 (43%), Gaps = 85/951 (8%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60
           +R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ 
Sbjct: 42  VRDAFLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVNPRSEMAGFRR 101

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFD 119
           V   QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + 
Sbjct: 102 VANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYG 161

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           + + RL+++ +  D         E+  +W  + G+    ++     +NFW M +TGPCGP
Sbjct: 162 IPEDRLWVSYFGGDPKAGLDPDLESRDIWLSL-GVRDSHVLSFGPEENFWEMGDTGPCGP 220

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           C+EI +D    +            + +E+WNLVF+Q  ++       LP+  +DTGMGLE
Sbjct: 221 CTEIHYDLAGRVGA---------PQLVELWNLVFIQHNREADGSLQPLPQRHVDTGMGLE 271

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRSS 282
           R+  VLQ   + YD DLF  L++A  Q                G   + +RV+ DH+R+ 
Sbjct: 272 RLVAVLQGTRSTYDTDLFSPLLKAIHQGCRAPPYLGRVGAADEGRTDMAYRVVADHIRTL 331

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341
           S  IADG+ P   G   VLRRI+RRA+ ++   L      +  L+P +   +G AYPEL 
Sbjct: 332 SVCIADGVYPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAYPELQ 391

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL----YDTHGLP 397
           +    I   +  ++  F  +L RG  ++D  L  LG  E+   +VA+ L         L 
Sbjct: 392 KNSAQIAHLVSEDEAAFLASLQRGRQIIDRTLRRLGPSELFPAEVAWSLSLAGNLGLPLD 451

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           L  +        L    +    Q   + RS+        G          L+ +      
Sbjct: 452 LLELMLEEKGVQLDSAGLARLAQEEAQHRSQQSEPVQEQGLQLNVHALGELQRRGVP--- 508

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFD 516
                               +       +   + V  +  + G  V     GQ+  ++ D
Sbjct: 509 --------PTDDSPKYNYSLRPSGGYEFSACEAQVLQLYTEDGTAVASVGKGQRCGLLLD 560

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ  D G  +  G   +     Q +  G F+ H  V    L+    + L +
Sbjct: 561 KTNFYAEQGGQASDRGYLVRVGQEDVLFPVAQAQVCGGFILHEAVAPEGLKVGDQVQLHV 620

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R +    H+ATHLL  AL   LG H  Q GS ++P+ LRFDV    P+T  +L+++
Sbjct: 621 DEAWRLRCMEKHTATHLLSWALRQTLGPHTEQRGSHLSPERLRFDVATQAPLTPEQLRAV 680

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYED 685
           E  V D + Q+ PV    +             L   Y D V          R +    + 
Sbjct: 681 EGTVQDAVGQDEPVYMEDVALALTAHVPGLRSLDEVYPDPVRVVSVGVPVARALDPASQA 740

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKL 742
               S  LC GTH+  TG +  L IV E  +  G  R+ A+TG+   +AR       +++
Sbjct: 741 ALRTSVELCCGTHLLRTGAVGDLVIVGERQLTKGTTRLLAVTGEQAQQAREVGQNLAQEV 800

Query: 743 KSLASFLKVSQGNVVGR------VEEIWE----------EYRKLQ--LIHAKRKLQLNVE 784
           ++    L     +V         V  + +          + R+LQ  L   +R+    + 
Sbjct: 801 EAATERLSRGSQDVAAAQRLSKDVGRLTDAVDTALMPQWQRRELQAALKALQRRANAAIR 860

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
            L   + A             S+ L  V+  L ++     ++L+             V +
Sbjct: 861 KLELGQAAGNPERGAATVCPPSQVLVKVVRQLCERAPGTSVLLLSPQPRGHVLCACQVAQ 920

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
                F A   A      +GG   G R  +AQ  G   +    A++   ++
Sbjct: 921 SATPAFTAEAWALAVCSPMGGKAWGSR-VVAQGTGTTAD-LGAALSTARAY 969


>gi|301757306|ref|XP_002914501.1| PREDICTED: LOW QUALITY PROTEIN: probable alanyl-tRNA synthetase,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 984

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 266/962 (27%), Positives = 416/962 (43%), Gaps = 97/962 (10%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60
           +R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ 
Sbjct: 42  VRDAFLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVNPRSEMAGFRR 101

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFD 119
           V   QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + 
Sbjct: 102 VANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYG 161

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           + + RL+++ +  D         E+  +W  + G+    ++     +NFW M +TGPCGP
Sbjct: 162 IPEDRLWVSYFGGDPKAGLDPDLESRDIWLSL-GVRDSHVLSFGPEENFWEMGDTGPCGP 220

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           C+EI +D    +            + +E+WNLVF+Q  ++       LP+  +DTGMGLE
Sbjct: 221 CTEIHYDLAGRVGA---------PQLVELWNLVFIQHNREADGSLQPLPQRHVDTGMGLE 271

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRSS 282
           R+  VLQ   + YD DLF  L++A  Q                G   + +RV+ DH+R+ 
Sbjct: 272 RLVAVLQGTRSTYDTDLFSPLLKAIHQGCRAPPYLGRVGAADEGRTDMAYRVVADHIRTL 331

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341
           S  IADG+ P   G   VLRRI+RRA+ ++   L      +  L+P +   +G AYPEL 
Sbjct: 332 SVCIADGVYPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAYPELQ 391

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL----YDTHGLP 397
           +    I   +  ++  F  +L RG  ++D  L  LG  E+   +VA+ L         L 
Sbjct: 392 KNSAQIAHLVSEDEAAFLASLQRGRQIIDRTLRRLGPSELFPAEVAWSLSLAGNLGLPLD 451

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           L  +        L    +    Q   + RS+        G          L+ +      
Sbjct: 452 LLELMLEEKGVQLDSAGLARLAQEEAQHRSQQSEPVQEQGLQLNVHALGELQRRGVP--- 508

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFD 516
                               +       +   + V  +  + G  V     GQ+  ++ D
Sbjct: 509 --------PTDDSPKYNYSLRPSGGYEFSACEAQVLQLYTEDGTAVASVGKGQRCGLLLD 560

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ  D G  +  G   +     Q +  G F+ H  V    L+    + L +
Sbjct: 561 KTNFYAEQGGQASDRGYLVRVGQEDVLFPVAQAQVCGGFILHEAVAPEGLKVGDQVQLHV 620

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R +    H+ATHLL  AL   LG H  Q GS ++P+ LRFDV    P+T  +L+++
Sbjct: 621 DEAWRLRCMEKHTATHLLSWALRQTLGPHTEQRGSHLSPERLRFDVATQAPLTPEQLRAV 680

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYED 685
           E  V D + Q+ PV    +             L   Y D V          R +    + 
Sbjct: 681 EGTVQDAVGQDEPVYMEDVALALTAHVPGLRSLDEVYPDPVRVVSVGVPVARALDPASQA 740

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKL 742
               S  LC GTH+  TG +  L IV E  +  G  R+ A+TG+   +AR       +++
Sbjct: 741 ALRTSVELCCGTHLLRTGAVGDLVIVGERQLTKGTTRLLAVTGEQAQQAREVGQNLAQEV 800

Query: 743 KSLASFLKVSQGNVVGR------VEEIWE----------EYRKLQLIHAKRKLQLNVEDL 786
           ++    L     +V         V  + +          + R+LQ      + + N   +
Sbjct: 801 EAATERLSRGSQDVAAAQRLSKDVGRLTDAVDTALMPQWQRRELQAALKALQRRANAA-I 859

Query: 787 SCHKIADVNFMSHIISE-------------VDSKELKSVMDALQKKIQSGIIMLVGISKE 833
              ++  V   +                    S+ L  V+  L ++     ++L+     
Sbjct: 860 RKLELGQVRXCAADTLGQGQRHWRGAATVCPPSQVLVKVVRQLCERAPGTSVLLLSPQPR 919

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
                   V +     F A   A      +GG   G R  +AQ  G   +    A++   
Sbjct: 920 GHVLCACQVAQSATPAFTAEAWALAVCSPMGGKAWGSR-VVAQGTGTTAD-LGAALSTAR 977

Query: 894 SF 895
           ++
Sbjct: 978 AY 979


>gi|83316024|ref|XP_731046.1| alanyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490961|gb|EAA22611.1| alanyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
          Length = 1218

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 269/1042 (25%), Positives = 459/1042 (44%), Gaps = 160/1042 (15%)

Query: 2    SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
                 +R  F+ +F+   H ++ S+S+IP ND TL+FTN+GM  FK IF G         
Sbjct: 190  MTSEQVRNNFINYFKNKNHTVVDSASVIPYNDNTLLFTNAGMNQFKKIFLGNVDKNSDLG 249

Query: 59   --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I+ AWDLLT 
Sbjct: 250  KLKRCVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIEYAWDLLTN 309

Query: 117  EFDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
             + ++  RLY+T +           D EA K+W K   L   +I+     DNFW MAETG
Sbjct: 310  VYKINPDRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDEKRILPFGMKDNFWEMAETG 367

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPCSEI +D+           +++    +EIWN+VFMQ+ +   +    LP   IDTG
Sbjct: 368  PCGPCSEIHYDRIGNRD-ASDLVNKDDPSVLEIWNIVFMQYNKDENKNMNKLPSPCIDTG 426

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----------KYEGNNIVNHRVIV 276
            MGLER+ ++LQ   +NYD DLF  + +  +++              +        +RVI 
Sbjct: 427  MGLERITSILQNVQSNYDTDLFTPIFKQIKEIFNNSIPSYQGKINEEDPDKIDYAYRVIS 486

Query: 277  DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP---LMMHLLPALCTEM 333
            DH+R ++  I+DG +P+NEGR YV+RRI+RRA+   + +   +        L+ ++C  +
Sbjct: 487  DHIRCATIAISDGCIPSNEGRNYVIRRIIRRAVRVGKQVFNIKSNVLWFYKLVDSVCKIL 546

Query: 334  GSAYPE--LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-----ILNGDV 386
            G+ + +    +    I+  +  E+  F KTL++G+   + ++    ++      + +G  
Sbjct: 547  GNCFKDLQNEEKVNYIKNVIMQEELIFNKTLEKGVDQFNKIIKKCHQNPSNSNNLFSGKD 606

Query: 387  AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
            AF LY ++G P+D+++ +   + +  +++  FN   ++ +  +  ++  +          
Sbjct: 607  AFDLYTSYGFPIDLIEIMCEEKNVK-LNMEEFNTLFKKHQLISDTNNFKINK------VI 659

Query: 447  SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA---IVQQGEIVE 503
             L  +        Y++L    + K +     +       N  +  +K+   I+  G  ++
Sbjct: 660  DLPVEKAHEIKCKYNVLPTIDYHKYNWNNTFEDIKSKEENKNNLRLKSSVQIIYDGNFLD 719

Query: 504  EA-----------------VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
            E                     +K  ++  +T FY E GGQ+ DTG    + ++ Q+ +V
Sbjct: 720  ELVYTDNETKEPSSCEKTENEQKKYALILKETNFYYENGGQIYDTGFIQNESMKFQVLNV 779

Query: 547  QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------ 600
             +K     +H  ++  G ++    +   +D++ R+ ++ NH+ATHLL+ AL  +      
Sbjct: 780  -QKMNDYILHIGVLLSGSIKKNDVIETVVDFERRKLIACNHTATHLLNFALRKVLEDQMN 838

Query: 601  ----------------------------------------LGSHVSQNGSCITPDGLRFD 620
                                                       +  Q GS +  + LRFD
Sbjct: 839  QTKNKCDNKDENKKGSLEDSSAIKNKLEGNSSCNNNSNGSSIFNCEQKGSLVDDEKLRFD 898

Query: 621  VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
             +  + I    L  IE  +N+I+ + L V  + M+  ++    G  A+    Y+D+V VV
Sbjct: 899  FSFIQNINMDVLNKIETEINNIVKEELDVSIKTMDLTESKKIKGIRAIFEEDYSDKVNVV 958

Query: 680  SVEYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
             +      V            S  LCGGTH+ +T  I    I SE SI  GI RI A+T 
Sbjct: 959  FISKNADNVLNNLDINYTYLCSIELCGGTHIGNTKYIKEFIITSEESIGKGIHRINAVTN 1018

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE------------------EIWEEYRKL 770
            ++A       D+ +            N +  V+                  +I E+   +
Sbjct: 1019 KKAEEINKKFDDLVAKYKHVFDDPNENKLTDVQNYKRILKEDKFLPLIKKNKILEDLEII 1078

Query: 771  QLIHAKRKLQLNVEDLSC----------HKIADVNFMSHIISEVDS--KELKSVMDALQK 818
            +    ++K     E  +               ++     + +E++   K L+ V  A  K
Sbjct: 1079 EKDIVEKKKNAQKELFNKAMGLGKLYATENKDNILLDIKLFTEINGNQKVLEKVGQAYTK 1138

Query: 819  KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR-PHMAQ 876
              ++     + I  E     ++ + + L  +   A    +   + +GG  GGG+      
Sbjct: 1139 ANKNLSYFFI-IHDENNTYCVLEIRDSLKGKEMQAETFMKQVMESVGGHSGGGKNKAFGS 1197

Query: 877  SGGPNGNKADQAIAGVASFLKK 898
            +G   G    QA       +KK
Sbjct: 1198 AGKDKGTAIKQA---AEEVIKK 1216


>gi|315453099|ref|YP_004073369.1| alanyl-tRNA synthetase [Helicobacter felis ATCC 49179]
 gi|315132151|emb|CBY82779.1| alanyl-tRNA synthetase [Helicobacter felis ATCC 49179]
          Length = 872

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 298/915 (32%), Positives = 451/915 (49%), Gaps = 78/915 (8%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            I+  FL+ F++  H  +PSSSL+P +D +L+FTN+GMV FK+IF G+  P     T+ Q
Sbjct: 2   DIKNAFLQHFERLNHVRVPSSSLVP-DDSSLLFTNAGMVQFKDIFLGKVAPFTPRATSAQ 60

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG TNRHHT FEMLGNFSF  YFKE AI  A+D + K      + +
Sbjct: 61  LCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFFDYFKEEAIAYAYDFVHKTLGFQNKDI 120

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           YI+V+++D +A+KLW+K   +    I  +   DNFW MA+TGPCG CSEI+ DQG +   
Sbjct: 121 YISVHEKDTQAYKLWQKF--VPESHIKTMGDKDNFWQMADTGPCGYCSEIYIDQGAQAFH 178

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   EG+R++EIWNLVFMQ+++  +     L +  IDTGMGLER+  +L+   NN+
Sbjct: 179 SEQDYFGGEGDRFLEIWNLVFMQYDRSKEGVLTPLSQPCIDTGMGLERVQALLEGVQNNF 238

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LFK L+   E+V  + Y   +  + RV+ DH RS  FL+A G+   N GRGYVLRRI
Sbjct: 239 DSSLFKPLMACIEEVFDLPY-SAHKESFRVLADHARSVVFLLAMGVYFDNTGRGYVLRRI 297

Query: 305 MRRAMCYARLLGY------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           +RRA+ +  LL +      +EP    +L ++C  M   Y  L + +  ++   ++E+E F
Sbjct: 298 LRRALRHGYLLEHAKGRELSEPFFYKILGSVCASMRD-YSILQEQQESLQAECKAEEELF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TL++G+ L +  L+    +EI +G VAFKLYDT+G PLD+  D+L  +G   +D+  +
Sbjct: 357 LNTLEKGMHLFESALAE--SNEIFSGAVAFKLYDTYGFPLDLTMDMLRDKG-IEVDLAGY 413

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              ++EQR+R++       SG  + +      K     F GY        ++       Q
Sbjct: 414 EACMQEQRARSQ----FKQSGAKDSLKTLDLSKLEPNAFEGYHHESLKASIRALYAPDDQ 469

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
              +                   V+ A    K  VV D+TPFY + GG +GD G  +   
Sbjct: 470 GALV------------------SVQSAAQNTKAYVVLDKTPFYPQGGGPIGDKGVLLDLT 511

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
                  +  +  G      +  +   R    ++  +    R +++ +HSATHLLH AL 
Sbjct: 512 HNPIAHVLDTQKVGAINISLVEFKREGRVGDGVIAQVID--RAEIAKHHSATHLLHLALR 569

Query: 599 TILGS---------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
            +LG           + Q GS I    LRFD +  + ++ AE++++E+ VN  I+     
Sbjct: 570 EVLGRAAQAEGKNAQIQQKGSHIETTRLRFDFSFYRALSDAEIEAVEEFVNTQISMGAST 629

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
               M  E A  SGA  L   KY + VRVV +        S   CGG HVS +  I    
Sbjct: 630 NIEHMGAEAAKQSGAVMLFEDKYLEEVRVVRIAG------SLEACGGVHVSDSAHIGGFA 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I   SS+ AG+RRIEA+ G+     +  +   L+     LK S            +  + 
Sbjct: 684 ITKSSSVSAGVRRIEAVCGKTYYQFIAQERATLRQARQKLKTS------------DLLKA 731

Query: 770 LQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L         + N   L   H I +         +   KE  +++D  +K+ +  + + +
Sbjct: 732 LDTKAQSATPKPNCAHLVQWHSIRNKQLALLHAQKEHLKEFLALIDTHKKQQKDLVALFL 791

Query: 829 GISKEKKA---SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA------QSGG 879
             + +K+    S+  V +ED+L       L      +  G  GGG+          Q G 
Sbjct: 792 YPNLQKQGLELSLKSVGSEDMLALLT--RLKSQLDTLGYGHKGGGKRDYVSLLIQKQGGA 849

Query: 880 PNGNKADQAIAGVAS 894
               + D  +  +  
Sbjct: 850 LTPEEIDHLVQTLKQ 864


>gi|240047430|ref|YP_002960818.1| alanyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581]
 gi|239985002|emb|CAT04995.1| Alanyl-tRNA synthetase [Mycoplasma conjunctivae]
          Length = 884

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 274/938 (29%), Positives = 434/938 (46%), Gaps = 98/938 (10%)

Query: 1   MSN---VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M        IR  +L+FF    H ++ S SLIP NDP+L++ NSG+   K  FTG ++P 
Sbjct: 1   MKTNLSSKQIRQLWLDFFASKNHLIVESKSLIPQNDPSLLWINSGVATLKEYFTGHKQPP 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            + +T  QK +R     ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ A++ L   
Sbjct: 61  SKRITNSQKAIRT----NDIENVGITSRHHTMFEMLGNFSIGDYFKKEAIEFAFEFLVYV 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             +D  +LYIT + +D E  K W+ + G+  D +I      NFW +   GPCGPCSEI++
Sbjct: 117 LKMDLDKLYITYFSDDLETKKYWQDL-GIQDDHLIAGNQKTNFWDIG-LGPCGPCSEIYY 174

Query: 178 DQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           D+GE        L  +  E +R+IEIWN+VF +F    +     L   +IDTG G ER+ 
Sbjct: 175 DRGEKFDSRGIELLKNDIENDRFIEIWNIVFSEFNNDGEGNYTPLVSKNIDTGAGFERIV 234

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSS 283
           ++LQ    N+D DLF  +I   E+++  KY+ +N               +VI DH+RS  
Sbjct: 235 SILQNGPTNFDTDLFLPIILEVEKLSDFKYDVDNYFKKDKKQTKINTYFKVIADHIRSVV 294

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
             I DG+ P+N  RGY++RR++RRA    R LG  +  +  L+  + + +     E    
Sbjct: 295 NAINDGVEPSNTHRGYIIRRLIRRAFRMGRKLGIKQAFLYKLVGVVKSSLIYDIDEKK-- 352

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              + + ++ E+E F KT++ G +LL+      GK+  +  ++ FK+++T+G P+++ Q+
Sbjct: 353 ---VAKIIKKEEELFEKTIENGEILLNREFEKNGKNFNI--EIVFKMFETYGFPIELTQE 407

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL  +GL       F++  E +   A         G    I      K   ++F+GY+ L
Sbjct: 408 ILEEKGLKL----DFDKIEELKEKHANLSRGKQHLGMNLAINSLALIKGKESEFVGYEHL 463

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                    ++ +  +     ++E     +    +FD+TPFYA 
Sbjct: 464 EQ-----------------------TAKILFLANNESLLETTQEDEISYAIFDKTPFYAT 500

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ  D G  I    +++I  V K       ++  V +G+L     + L +D  NRR L
Sbjct: 501 GGGQKHDQGLIIQGDNKIEIIKVFKDKYF---NNIHVFKGVLNKNEEVKLIVDEANRRNL 557

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLL  AL    G  + Q GS    + L FD   SK  T  EL  +E  VN  I
Sbjct: 558 ERNHSATHLLFKALREQFGLQIKQLGSDNNENRLTFDFPVSKKPTDEELAKVESLVNFYI 617

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             + P        ++A    A   L   +Y D   V  V +      ++ LCGGTH+++T
Sbjct: 618 QSSTPRKYLNTTIKEAEKLNAIMTLEEAEYMDPKNVRLVHF---QGITTDLCGGTHIANT 674

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQ--DEKLKSLASFLKVSQGNV--- 756
             I    I+S  +  +G+ RI AIT  ++   +L  Q   ++L   A   K  Q +    
Sbjct: 675 SLIQKFKIISCQNKGSGVFRIRAITTLEKYYDYLTQQVEQKELSLAAIEQKNRQFDPFYK 734

Query: 757 --VGRVEEIWEEYRKLQLIHAKRKLQLNV----------------EDLSCHKIADVNFMS 798
             V RV ++      L L   + KL                             + +F  
Sbjct: 735 MQVHRVNDLEILNNNLDLAIKQAKLDTLQLIKNKKKEEKTTDFIFNQEKIFTFNNQDFYI 794

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             I++      K +   L+++  +   +L+     +K  V++    +     N++D+   
Sbjct: 795 DFITDKQINS-KQLAATLREEHANITFVLLQEMAAQKILVVVSSKTN-----NSLDILNK 848

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             K +  G GGG   +AQ G  N  + +  I  +   +
Sbjct: 849 INK-IFDGKGGGNKIIAQ-GILNQKEVN--INKIKEII 882


>gi|324504252|gb|ADY41836.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 835

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 252/831 (30%), Positives = 391/831 (47%), Gaps = 64/831 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
            + S +R +FL+FF   GH  +PSSS++P +DP+L+F  +GM  FK+I  G         
Sbjct: 19  MSSSEVRQSFLKFFMDRGHVHVPSSSIVPSDDPSLLFVTAGMNQFKSIILGVCGADDWRS 78

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             + V   QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFG YFK  A Q AW+ LT+
Sbjct: 79  SLRRVVNSQKCLRAGGKHNDLNDVGGDLSHHTFFEMLGNWSFGDYFKAEACQFAWEYLTE 138

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L   RLY+T Y +D         E  ++W+ + GL   +I+R    +NFW MA+TGP
Sbjct: 139 VLRLPPDRLYVTYYGDDHELSLGDDIECREIWRNL-GLHPSRILRFGVEENFWVMADTGP 197

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D            +      +EIWNLVFMQ+ +        LP   ID GM
Sbjct: 198 CGPCSEIHYDFI-GGRDASHLVNTSDPSVVEIWNLVFMQYNRDASGRIVSLPCRHIDCGM 256

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHL 279
           G ER A ++Q+  +NYD D+F  LI    + T                    +R I DHL
Sbjct: 257 GFERTAAIMQQVQSNYDSDIFSPLISEISKYTSLGGYGGRIGQADIYGRDTAYRTIADHL 316

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338
           R+    I+DG+ P   GRGYVLRR++RRA   +   L     L+  L+P   + +  ++P
Sbjct: 317 RALCVAISDGVRPDAAGRGYVLRRMLRRAARMSSVTLQADRGLLAALVPTYTSHLARSFP 376

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLP 397
           E+     +IE+ +  E+ +F + +DRG  L        L K    +GD+A+ L++THG P
Sbjct: 377 EVANNAKVIEDIISLEESQFWRVVDRGERLFAEEAEKSLLKKIPFSGDIAWYLHNTHGFP 436

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +++   +   R L+ ID+  F +   + +   R  +        +            T  
Sbjct: 437 IELTSMLAEERNLS-IDLDRFEECRNQAKMLRRVRANDTCWRNVD------------TVR 483

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFD 516
           +  D +  +  M +                  + + AI  ++G  +E+  +  +  VV D
Sbjct: 484 LCQDGMTRTCDMGKYEYAKMDDGSYVFPER-QAKILAIFSKEGIRLEQLATNMEGCVVVD 542

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +T FYAE GGQL D G                + +  FV         L  E +++  ID
Sbjct: 543 ETIFYAEQGGQLADNGVLCSSNGEEVFVVDDVQKKDDFVFLIGHSTQDLTVETNVIQKID 602

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R QL   H+ THLL  AL  + G  V Q GS ++PD +RFD +    ++  +++ +E
Sbjct: 603 LNRRLQLMRAHTGTHLLLDALRILFGPAVYQRGSLVSPDRIRFDCSLEHALSQGQIREVE 662

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR------VRVVSVEYEDGGV-- 688
             ++++I  + PV T I+      A        T           +RVV++     G   
Sbjct: 663 RVLSEVIESDQPVFTEIVPHTQLSAIQNIQSTITASLTETASNGLIRVVTINAPVNGKSA 722

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            +   C GTHV +T ++    +VS+ S+ +G+RR+ A+TG  AR  +    E    L   
Sbjct: 723 RAVECCCGTHVLNTRDLGAFVVVSDRSLGSGVRRLTALTGTAARLAIEKGMELRTRLGKL 782

Query: 749 LKVS---------QGNVVGRV------EEIWEEYRKLQLIHAKRKLQLNVE 784
              S         +  +   V      +E++   R+L+    +++ +   E
Sbjct: 783 NSDSHSGGELIRFEKELKSSVVPILLRDELYSSLRQLKKASLRKRRRTANE 833


>gi|85057696|ref|YP_456612.1| alanyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123518184|sp|Q2NJ60|SYA_AYWBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|84789801|gb|ABC65533.1| alanyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 864

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 265/933 (28%), Positives = 436/933 (46%), Gaps = 108/933 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +++FF    H +  S SLIP N+  L++ N+G+ P K  F G + P ++ +
Sbjct: 1   MTSFEIRQMWIKFFASKNHHIEKSFSLIPRNEDNLLWVNAGITPLKKYFDGTQTPSFRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T VQKC+R      D+ NVG+T+RHHTFFEMLGNFS G YFK+ AI  A++LLT  K F 
Sbjct: 61  TNVQKCIRT----KDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT + +D++ ++ W  + G++ + +I +   DNFW +   GP GPC+EIFFD+
Sbjct: 117 FPLEKLYITYFFQDQDTYQYWLDL-GVNKNHLIHL--KDNFWQIGP-GPSGPCTEIFFDR 172

Query: 180 GECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERM 233
           G+              E +R+IEIWN+VF Q+    K   ++   LP  +IDTG GLER+
Sbjct: 173 GKTFDPRNKELIIEDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERL 232

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ    N++ DLF  LI+A E++T + Y G    + ++I DHL++  F I DG +  
Sbjct: 233 ACILQNTKTNFETDLFFPLIKALEKMTQITYTGQE--SFKIIADHLKTLVFAINDGAVLT 290

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NE RGYVL++++RRA    + LG  +P +  L+P     M   Y EL   + +I + L  
Sbjct: 291 NEKRGYVLKKLLRRAANEGKKLGLEKPFLYKLVPPTVAMMKDFYKELCTNQEMIAKVLLQ 350

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ++  F KTL          L+       L+G   FKLYDT+G+P +++ D    + +   
Sbjct: 351 QENIFEKTLKTAEKTFLQHLTQ----NTLSGKNFFKLYDTYGIPENLILDYAKKKNITT- 405

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + L EQ++ ++ +     +   ++  F        ++FIGY             
Sbjct: 406 DYQKFQELLHEQQNLSKKNQTSQTNMNKQEEAF--LHFLTPSEFIGYTNF---------- 453

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  +  +G             +V ++TPFYA  GGQ+ D G 
Sbjct: 454 -------------ACKTKVIKVFDEG-------------IVLEKTPFYANMGGQIEDEGW 487

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              + +        K  +          +G       +   ID   R+Q+S +H+ATHLL
Sbjct: 488 IDNNKVT-------KITKLPNGQILHEFKGNFCEGQEVYACIDKTKRKQISYHHTATHLL 540

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
              L   LG+H+ + GS +    LR+D  H + IT   L  IE  VN +I + +PV    
Sbjct: 541 EVVLQKQLGNHIKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKRVPVKIEQ 600

Query: 654 MNREDAIASGAA---ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           ++ +DA    A         KY D+VR+V+++       S  LCGGTH ++T ++    I
Sbjct: 601 LSIQDAQKKYATLLEQNQKAKYKDKVRIVNIDT-----FSVDLCGGTHATNTKDLEHFTI 655

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSL---ASFLKVSQGNVVGR---- 759
           +S  SI +GI RIEA+  +  +  L  +      +L  L   A  L+    +   +    
Sbjct: 656 LSYESISSGIYRIEAVCNKNCQESLNAKLAPYQNELHQLTQKAKSLQTQNLDFEIKKFPP 715

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           + + +++    Q     ++  L + +    +      +    + +  +  K +M  ++++
Sbjct: 716 ITKSYQDIINYQKHIKTQQQALVLFEKKVLEHHQKKMIQAESNFLPPQINKKMMLTIKEE 775

Query: 820 IQSGI---------------IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
               +               ++ +   + +K   L           +A +L +     L 
Sbjct: 776 KPLEVIKFFMNHIFYKYHLEVLFLSYVQPEKIVFLCQ-----SKTLHAGNLIKEGVS-LA 829

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            G GGG   +AQ G       ++ +  V + LK
Sbjct: 830 CGSGGGNASLAQGGTKKTQNLEKMLNFVKNKLK 862


>gi|67925719|ref|ZP_00519029.1| Alanyl-tRNA synthetase, class IIc [Crocosphaera watsonii WH 8501]
 gi|67852440|gb|EAM47889.1| Alanyl-tRNA synthetase, class IIc [Crocosphaera watsonii WH 8501]
          Length = 615

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/625 (38%), Positives = 363/625 (58%), Gaps = 35/625 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+ +  H++LPS+SL+P  DPT++ T +GM+PFK IF GQ++  +   T
Sbjct: 9   TGQEIRDRFLQFYSQYKHQILPSASLVPE-DPTVLLTIAGMLPFKPIFLGQKQSDFPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK + L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVYQLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V++ D+EAFK+W++I G+   +I R+   DNFW    TGPCGPCSE+++D    
Sbjct: 124 ENIVVSVFENDDEAFKMWEEIIGVPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFM++ +    +   L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GDDDIDLEDDSRFIEFYNLVFMEYNRDADGKLTPLQNKNIDTGMGLERMAQILQKVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  +  + Y+        + +VI DH+RS   +I+D I  +N  RGY
Sbjct: 243 NYETDLIFPIIETAANIANINYQKATEKTKVSLKVIGDHVRSVVHMISDNITASNTDRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +          AYP++ +    I+  L  E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGIEGKFINEVAETAIQLSQKAYPQVRERDSFIKAELEREEATFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RG  LL  ++S   K   ++G  AF LYDT G PL++ Q+I     L  +DI  F 
Sbjct: 363 KTLERGEKLLAEIISKTEKQGQISGVDAFTLYDTFGFPLELTQEIAEESNLT-VDIEGFE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +E+Q+ R++A    +   T +     L E    T+F+GY  L+               
Sbjct: 422 VEMEQQQERSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDLQS-------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V+A++ +G+ VE A +G ++++V D+TPFY E+GGQ+GD G   G+ +
Sbjct: 467 ---------TAKVEAVLIEGKSVETATAGTEIQIVLDKTPFYGESGGQIGDRGFLTGEDL 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ DV +K  GIFVH   VERG +     L  TID   RR++  NH+ATHL   AL  
Sbjct: 518 VIRVDDV-QKESGIFVHFCRVERGQVSVNEHLKATIDRSCRRRVQANHTATHLFTAALKK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHS 624
           ++   +SQ GS    D L+FD+   
Sbjct: 577 VVDDSISQAGSLGDFDRLKFDLIAF 601


>gi|323452905|gb|EGB08778.1| hypothetical protein AURANDRAFT_53556 [Aureococcus anophagefferens]
          Length = 1031

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 275/978 (28%), Positives = 432/978 (44%), Gaps = 147/978 (15%)

Query: 4   VSSIRTTFLEFFQK---NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
              IR TF++  +     GH   PSSS++P  DPTL+F N+GM  +K+IF G        
Sbjct: 29  AKKIRDTFVQ--RAGGARGHTHWPSSSVVPHEDPTLLFANAGMNQYKSIFLGLAPRRKRR 86

Query: 57  -----VYQ----------------------AVTTVQKCVRAGGKHNDLDNVGRTNRHHTF 89
                 Y                            QKC+RAGGKHNDLD+VG+   HHTF
Sbjct: 87  RATPDDYNTPLPIPSFGGTIDPKTKMATLKRACNSQKCIRAGGKHNDLDDVGKDLYHHTF 146

Query: 90  FEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY----------DEDEEAFKL 139
           FEMLGN+SFG YFKE AI++AW+ LT EF LD  RLY+T +            DEE  ++
Sbjct: 147 FEMLGNWSFGDYFKEEAIRMAWECLTVEFQLDPDRLYVTYFGGDALKAPGVPSDEETRQI 206

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
           W K   + A++++     DNFW M +TGPCGPC+EI +D+           + +    IE
Sbjct: 207 WLKY--VPAERVLPFDAGDNFWEMGDTGPCGPCTEIHYDRVGGRDAAA-LVNMDDPDVIE 263

Query: 200 IWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV 259
           IWN VF+Q+ +        LP   +DTGMG ER+A++LQ + +NYD D+F  L    + V
Sbjct: 264 IWNNVFIQYNRDKFG-LKELPAQHVDTGMGFERLASILQGQMSNYDTDIFTPLFAEIQAV 322

Query: 260 TGM----------KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           +G           + +    + +RV+ DH+R+ +F I DG +P  +GRGYVLRR++RRA+
Sbjct: 323 SGCPVAYAGKIGDEDKETKDMAYRVVADHVRTLTFAITDGAVPDTQGRGYVLRRVLRRAV 382

Query: 310 CYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368
            Y    LG  +  +  L+P LC  +G A+PE+++AK  +   L  E+  F +T+D+G   
Sbjct: 383 WYGQHFLGAPKGFVYKLVPKLCEVLGEAFPEIVKAKDTVMAVLEGEERDFNRTIDKGARF 442

Query: 369 LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSR 428
            +     L K     G  AF L  + G PLD+ + +   RG+  +D+  ++ AL+E++ +
Sbjct: 443 FNKQAEKLPKGAPFPGSDAFVLSGSLGFPLDLCEIMAEERGMT-VDVAGYHAALKEEQDK 501

Query: 429 ARAHSLGLGSGTTEKIWFS---------LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             A      +  +     +                T+               + +   + 
Sbjct: 502 NAAALAKRKAARSAGADMTCAAEQTAALAAAGAPKTE--------SEGKYVWNARPAAKV 553

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
             + +  G       +V   +  + AV+G     V D T FYAE GGQ+ DTG  + D  
Sbjct: 554 VALYVGKGGGPKGDGLVDAVDPSKHAVAG----AVLDATSFYAEMGGQVYDTGALLKDDA 609

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++   +  +   G +V H     G L+    +   +DY  R +++ NH+ TH+L+ AL  
Sbjct: 610 KILDVEDVQ-VYGGYVVHVGAPLGPLKVGDDVACAVDYDRRVRVAPNHTMTHVLNFALRE 668

Query: 600 ILGSH---------------VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +L                   +Q GS +  + LRFD     P+T+ +LK++E  VN+ IA
Sbjct: 669 VLLGGSEGAKADAEKTGVDRCAQRGSYVDDERLRFDFAWDAPLTADQLKAVEAIVNETIA 728

Query: 645 QNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSA 692
             L V                 A+ G  Y D VRVV+V                   S  
Sbjct: 729 AGLVVDAVETPLDAAMAVESLRAMKGEAYPDPVRVVAVGAPVADVVAAPCGAAWRGMSVE 788

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV +T + +   ++ E+ I  G+RR+ A T ++A +      E  + LA  L   
Sbjct: 789 LCGGTHVRNTKDAVGFALLEENGIAKGVRRVVAATREKAAAAHAAATEIRERLA-MLGAM 847

Query: 753 QGNVVGRVEEIWEEYRKLQL--------IHAKRKLQLNVEDLSC---------------- 788
                  +  + E  + L+L         H K   +  V+ L                  
Sbjct: 848 PLATPDHIAAVGETVKALKLDVDAATMPQHEKMAAREEVQKLIAGPLKAAQKADAKKKAD 907

Query: 789 ---------HKIADVNFMSHIIS-EVDSKELKSVMDA-LQKKIQSGIIMLVGISKEKKAS 837
                     +      ++  +    D+K  + +  + L K   +G  ++V  + +K A 
Sbjct: 908 AAVGAFQALAESNASGAVAARVDFGADAKLWQKLQKSTLAKVAPAGSFLVVSDAGDKIAI 967

Query: 838 VLIVVTEDLLDRFNAVDL 855
                   +    +    
Sbjct: 968 YAAACQAHVDAGLDCRAW 985


>gi|269114905|ref|YP_003302668.1| Alanyl-tRNA synthetase (Alanine-tRNA ligase, AlaRS) [Mycoplasma
           hominis]
 gi|268322530|emb|CAX37265.1| Alanyl-tRNA synthetase (Alanine-tRNA ligase, AlaRS) [Mycoplasma
           hominis ATCC 23114]
          Length = 887

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 260/939 (27%), Positives = 444/939 (47%), Gaps = 100/939 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +L+FF+  GH ++PS SLIP NDP+L++ NSG+   K+ F+G++ P  + 
Sbjct: 1   MLTSKEIRKMWLDFFKSKGHLVVPSKSLIPQNDPSLLWINSGVATLKDYFSGKKIPPAKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI   ++ +     L
Sbjct: 61  ITNSQKSIRT----NDIENVGITARHHTFFEMLGNFSIGDYFKKEAIAFGYEFIFNVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +++ +YIT Y ED++ +  W   +G+    +I+ + + NFW + + GPCGP +EIF+D+G
Sbjct: 117 NKQNIYITYYSEDKDTYNYWIS-NGIDPSHMIKGSRDTNFWDVGQ-GPCGPDTEIFYDRG 174

Query: 181 ECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                    L  +  E +RYIEIWN+VF QF    +     L   +IDTG GLER+ ++L
Sbjct: 175 TKYDTRGIELLENDIENDRYIEIWNIVFSQFNNDGENNYTELATKNIDTGAGLERITSIL 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLI 286
           Q+   N+D DLF  +I A+E++T   Y+ NN               ++I DH+R+S   I
Sbjct: 235 QDAPTNFDTDLFLPIIHATEKLTNKHYDINNYFTKEPIQMKINTQFKIIADHIRASVNAI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGY-TEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P+N GRGY++RR++RRA      LG   +  +  L+  +   +            
Sbjct: 295 SDGVKPSNIGRGYIIRRLIRRAYRAGISLGITQKAFLYELVQIVKDSL-----IYDIDVE 349

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            +++ +  E+  F KT++ G  LL+  +     +  ++  +AFK++DT+G P+++ ++IL
Sbjct: 350 EVKKVILDEENLFAKTINEGEKLLNQEIEK---NGTIDVKIAFKMFDTYGFPIELTREIL 406

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +    ID+  FN+ L++ + ++R +           +          ++F+GYD  + 
Sbjct: 407 QEKN-IDIDMNEFNEFLKQHQEKSRGNIEAGMQKVINSLSLI---TDKISEFVGYDHTK- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  +S +  ++   E +  A   +   ++ D+TPFYA +G
Sbjct: 462 ----------------------TTSKILYLLNSEEKINNAGEDEVSYLILDKTPFYATSG 499

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G  +    R+++ DV K       +H  V +G + +   +   +D   R   + 
Sbjct: 500 GQNHDEGYILQGNNRIEVLDVFKDKYW---NHVHVVKGKINSNEPVQCFVDEDKRINFAR 556

Query: 586 NHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           NHS+THL+  AL     +  + Q GS IT +   FD       T  E+K IE  +   IA
Sbjct: 557 NHSSTHLMFSALRETYPNEIIKQLGSNITYEHFTFDFGLDHRPTKEEIKLIEHKMRQYIA 616

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +++     I + + A   GA   +          + V   +G   +  LCGGTHV  +G 
Sbjct: 617 RDVKRNYIITSLKKAEEMGAYMTIDESEYHDANYIRVVEFEG--ITKDLCGGTHVPHSGI 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARS-----HLMGQDEKLKSLAS---------FLK 750
           I    IV+  S   GI R+  +T            +  + + L +L             K
Sbjct: 675 IEDFKIVAVDSKGTGIYRLRVVTSYDLVRKYLLSEIQEKQKILDTLIKNNQKLNEGYNFK 734

Query: 751 VSQGNVVGR---VEEIWEEY----RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMS 798
            ++  +  +   +EE+ EEY     KL+  +     Q   ED+         I D     
Sbjct: 735 YTKEIISNKTSDLEELLEEYDKCEEKLRNDYRALLKQKQSEDVDLSLYNYETINDKKVF- 793

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
            ++  ++   +K V  +L++     II+++  SK+      +        ++++  + + 
Sbjct: 794 -LLINIEQSLIKKVSISLREANPDSIIIILNKSKQDSYYFAVA-----SKKYDSNAIFKN 847

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             KVL    GGG   ++Q  G   +   Q    +   +K
Sbjct: 848 LGKVLNIH-GGGNAIISQ--GSLASNLKQ--EEIIEIIK 881


>gi|124514064|ref|XP_001350388.1| alanine--tRNA ligase, putative [Plasmodium falciparum 3D7]
 gi|23615805|emb|CAD52797.1| alanine--tRNA ligase, putative [Plasmodium falciparum 3D7]
          Length = 1408

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 266/1000 (26%), Positives = 451/1000 (45%), Gaps = 138/1000 (13%)

Query: 2    SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
             +   +R  F+ +F K  H ++ SSS++P ND TL+FTN+GM  FK IF G         
Sbjct: 389  MSAEEVRNNFINYFHKKNHTIIESSSVVPYNDNTLLFTNAGMNQFKKIFLGNADKNSDLG 448

Query: 59   --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I  AWDLLT 
Sbjct: 449  KLKRAVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESISFAWDLLTN 508

Query: 117  EFDLDQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
             + ++  RLY+T +  DE         E  K+W K   +S D+I+     +NFW MAETG
Sbjct: 509  VYKINPDRLYVTYFGGDENLSTCPADHETKKIWMKY--ISEDRILPFGLKENFWEMAETG 566

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPCSEI +D+           +++    +EIWN+VFMQ+ +   +    LP   IDTG
Sbjct: 567  PCGPCSEIHYDRIGNRDASS-LVNKDDPSVLEIWNIVFMQYNKDENKNMNKLPFPCIDTG 625

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVD 277
            MGLER+ ++LQ   +NYD DLF+ + +  +++             +        +RVI D
Sbjct: 626  MGLERITSILQNVDSNYDTDLFQPIFKQIKELFPYLPNYEGKINEQDVDKIDTAYRVISD 685

Query: 278  HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP---LMMHLLPALCTEMG 334
            H+R  +  I+DG LP+NEGR YV+RRI+RRA+ + + +   +        L+ ++C  +G
Sbjct: 686  HIRCVTVAISDGCLPSNEGRNYVIRRIIRRAIRFGKQVFNIKSNVLWFYKLVDSVCFILG 745

Query: 335  SAYPELIQAKL--LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
            + + +L        I+ T++ E+  F KTL++G+     ++    K+ I +G  AF LY 
Sbjct: 746  NTFKDLQNPDKINFIKNTIKQEEMVFNKTLEKGVEQFHKIIKKNTKNNIFSGKDAFDLYT 805

Query: 393  THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG-----TTEKIWFS 447
            + G P+D++Q +   +    +D+  FN   ++ +  +  ++  +               +
Sbjct: 806  SFGFPIDLIQIMCEEKSF-NLDLQEFNDLFKKHQLVSDTNNFKINKFFDIPVEKSHELKN 864

Query: 448  LKEKYGATQFIGYD---------LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
            +           Y+           +  KF    + +      +D     S+  + ++++
Sbjct: 865  VHNINPTVDHFKYEWNNNCANDGDNKDIKFETYVQVIYDGNNFLDNFTLPSNNDEQVLEK 924

Query: 499  GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
             + +EE     K  ++  +T FY E GGQ+ DTG    D ++ Q+ +VQK      +H  
Sbjct: 925  EKSIEENKK--KYALILKETNFYYENGGQIYDTGIIQNDNMKFQVLNVQKI-NEYVLHIG 981

Query: 559  IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------------------ 600
            +  +G +     +   +D+  R+ ++ NH+ATH+L+  L  +                  
Sbjct: 982  VFLKGYVSKNDKVQTIVDFDRRKLVACNHTATHMLNFMLRKVLTEKYTNSGKSSKTHEGN 1041

Query: 601  --------------------------LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
                                            Q GS +  + LRFD +  + I    +  
Sbjct: 1042 NEKHEMSENDINSNNNYDNNKEEKGFSIFTCEQKGSLVDDEKLRFDFSFIENINIDAITK 1101

Query: 635  IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV----- 688
            IE+ +N +I + L V  + M+ +++    G  A+    Y D+V VV +  +   +     
Sbjct: 1102 IENEINKLIKEELNVTVKTMDLDESKKIKGIRAIFEEDYADKVNVVFINKDVNNILNNMN 1161

Query: 689  ------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
                  HS  LCGGTH+ +T  I    + SE SI  GI RI A+T ++A       ++  
Sbjct: 1162 IDYTYLHSIELCGGTHIGNTKLIRKFLVTSEESIGKGIYRITAVTNKKADEIEKTFNDLY 1221

Query: 743  KSLASFLKVSQGNVVGRVEE------------------IWEEYRKLQLIHAKR------- 777
                  L+    N +  V+                   I +E  +++    ++       
Sbjct: 1222 DKYKHVLQEPNENKLADVQNYKRTLKENKFLPYIKKYHILQELEQIEKTIVEKTKNMQKE 1281

Query: 778  ---KLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISK 832
               K     +D +     ++        E+  + K L+ ++ +  K  ++     + I  
Sbjct: 1282 LFNKATNIGKDYAVQDKNNILLDIKFFDEIKGNQKVLEKIVQSYSKNNKNLSYFFI-ICD 1340

Query: 833  EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
            E     ++ V E L ++   A    +   K + G  GG +
Sbjct: 1341 ENNTYCVLEVKEALKNKNVQADLFMKEIMKSVLGHSGGSK 1380


>gi|298368683|ref|ZP_06980001.1| alanine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282686|gb|EFI24173.1| alanine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 1021

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 204/391 (52%), Positives = 270/391 (69%), Gaps = 11/391 (2%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG      +  + +VI DH+RS SFLI+DG++
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETG-APFSMDEPSLKVIADHIRSCSFLISDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
           ++E+ RFG+TL+ GL L D  LS +  + + 
Sbjct: 360 KNEESRFGQTLETGLKLFDDELSKVQFNALC 390



 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 163/526 (30%), Positives = 256/526 (48%), Gaps = 45/526 (8%)

Query: 377  GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
             +   L G+  FKLYDT+G P D+  D+    G   +D   FN+ +        A     
Sbjct: 530  TQKTTLAGETIFKLYDTYGFPYDLTADMARELG-IDLDEEGFNREM-------EAQRARA 581

Query: 437  GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
             +    K    L      T+F GY+                            + + A+ 
Sbjct: 582  RAAQNFKANAQLDYTGADTEFTGYE-----------------------KRSQETKIIALY 618

Query: 497  QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
            +  E V+E  +G+   VV +QTPFYAE+GGQ+GD G       R ++ D QK    +   
Sbjct: 619  KGSEAVDELQAGEAGVVVLEQTPFYAESGGQVGDVGFIFAGENRFRVEDTQKIKAAVHGQ 678

Query: 557  HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
               V  G L+   ++   ID   R  +  NHS THL+H AL  +LG+HV Q GS    + 
Sbjct: 679  FGAVVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTHLMHKALRDVLGTHVEQKGSLQNAEL 738

Query: 617  LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
             RFD++H + I++ E+  +E  VN  I  N+PV    M+ EDA  SGA  L G KY D V
Sbjct: 739  TRFDISHPQGISAEEIAEVERRVNAAIIANVPVKVETMSIEDAQKSGAMMLFGEKYGDFV 798

Query: 677  RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
            RV+++     G +S+ LCGGTHV+ TG+I    I+SE  I AGIRR+EAITG  A +   
Sbjct: 799  RVITM-----GDYSTELCGGTHVARTGDIGFFKIISEGGIAAGIRRVEAITGLAALAWAQ 853

Query: 737  GQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHK 790
             Q+  +K++ + +K     +V+ +++      + L+   AK K +L V        S   
Sbjct: 854  NQESLMKNIIAEVKAQTEKDVLAKIQANAANTKALEKELAKAKAELAVHAGAKLLDSAKD 913

Query: 791  IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
            +     ++  I   D+  L+ ++  L  K  + +I+L  +  + K S+   V++ L ++ 
Sbjct: 914  LGAAKLVASQIE-ADAAALREIVTDLTGKSDNAVILLAAV-NDGKVSLCAGVSKPLTNKV 971

Query: 851  NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A DL + +A+ + GG GGGRP +AQ+GG +  K  + +  V  ++
Sbjct: 972  KAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAVKLPEMLGSVEGWV 1016


>gi|71894391|ref|YP_278499.1| alanyl-tRNA synthetase [Mycoplasma synoviae 53]
 gi|83305851|sp|Q4A633|SYA_MYCS5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71851179|gb|AAZ43788.1| alanyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 878

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 250/931 (26%), Positives = 433/931 (46%), Gaps = 92/931 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  +L+FF+   H ++P  SLIP ND +L++ NSG+   K+ F+G++ P  + +
Sbjct: 1   MNSKEIRKAWLDFFESKNHFIVPPKSLIPVNDNSLLWINSGVATLKDYFSGKKNPPSKRM 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK +R     ND++NVG T RHHTFFEMLGNFS GGYFK+ AI+ A + +     LD
Sbjct: 61  ANSQKSIRT----NDIENVGITARHHTFFEMLGNFSIGGYFKKEAIEFATEFVLDVLKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY T + +D E   LW    G   +++I      NFW + + GPCGP +EIF+D+GE
Sbjct: 117 RSRLYFTYFHDDLETKNLWISQ-GFKEEQLIPGDRKTNFWEVGK-GPCGPNTEIFYDRGE 174

Query: 182 CIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                   L  +  E +RYIEIWN+VF  +    +     L + +IDTG GLER+ ++LQ
Sbjct: 175 KYDQRGIELLKNDIENDRYIEIWNIVFSTYNSDGEGNYTELNQKNIDTGAGLERIVSILQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIA 287
           +   N+D DLF  +I   E+ T  +Y+  N               ++I DH+R+    IA
Sbjct: 235 DAPTNFDTDLFLPIIHEIEKYTSYRYKIENYFIKDKAQKEINSYFKIIADHMRTVVNAIA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG  P+N  RGY+LRR++RR+   A  L  T+   ++ L  +         +  +    +
Sbjct: 295 DGEKPSNLSRGYILRRLIRRSYYKAIQLKITKSPFLYKLVDVIKASLPFEYDSKK----V 350

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            E ++ E+  F +T+ +G  +L+  +S     ++  GD+A+KL++T+G P ++ ++IL  
Sbjct: 351 AEVIKEEEVLFSQTISKGKEILEKFISENSSKDLFPGDLAYKLHETYGFPFELTEEIL-- 408

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGS 466
                 DI    +     + +    S        +K+  SL   K    +FIGY+     
Sbjct: 409 ---LQKDIKINKEEFNLAKEKHIEASRNQKETGMDKVINSLALIKAKEDEFIGYEHTNSV 465

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  ++ +   + E  +     ++ D+TPFYA +GG
Sbjct: 466 -----------------------SKILHLLNEENELSE--NDGTSYLILDKTPFYATSGG 500

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G    +G++L+I +V K     F +H     G L     +   +D + RR L  N
Sbjct: 501 QKHDRGYIEQNGVKLEILNVFKDK---FGNHVHKVVGKLSKNYPVTCQVDLKIRRGLERN 557

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THL+  AL  + G+ + Q GS    D L FD       T+ E+  +E+ V   I + 
Sbjct: 558 HSGTHLMFCALRNVFGNQIKQLGSDNNEDRLTFDAPFDSKPTNEEILKVENLVKSYIQKE 617

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +     IM  + A    A   L          + +   +G   ++ LCGGTH+ +T  + 
Sbjct: 618 VDRQYLIMGIDQAKEINAIMTLEEAEYMDSSKLRIVNFNG--ITADLCGGTHLENTKLLE 675

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHL--MGQDEKLKSLASFLKVSQG---------- 754
              I S     AG+ RI AI+ +          + E ++ L   +K  +           
Sbjct: 676 DFKITSVEKKAAGVYRIRAISSKETIEKYLENQKQELMQELLVLVKKLKDMQFDFKVSLD 735

Query: 755 ---NVVGRVEEIW-------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
               +  +++EI        E  +     ++K K+ +++ ++    I   N++     E+
Sbjct: 736 ESLELSSQIQEIKNLTNLASEAIKNKIKENSK-KISIDLNEIELENING-NYLYLN-DEI 792

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
             +E+K++   +++K  + +++L+    E ++++          ++N++++ +  A    
Sbjct: 793 SKEEIKNLSGVIREKFPNALVILIS-KGEAQSAISFA-----SKKYNSINVLKELANHFE 846

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
              GGG   +A     + ++    +     +
Sbjct: 847 L-RGGGNAILAMGSIKDYSQLKTFLKEKYKW 876


>gi|197294554|ref|YP_001799095.1| alanyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|171853881|emb|CAM11843.1| Alanyl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 863

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 275/929 (29%), Positives = 435/929 (46%), Gaps = 108/929 (11%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  +L+FF   GH +  S SLIP  DPTL++ N+G+ P K  F G + P+ + 
Sbjct: 1   MKSFA-IRKMWLDFFSSKGHHIEKSFSLIPHQDPTLLWVNAGVTPLKKYFDGSQTPLCKK 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
           +  VQKC+R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  A++LLT  K F
Sbjct: 60  IVNVQKCIRT----NDIENVGETARHHTFFEMLGNFSIGDYFKKEAIHYAYELLTSSKWF 115

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
                +LYIT Y  D++ +K W ++ G+  D++I +    NFW +   GP GPC+EIFFD
Sbjct: 116 SFPLDKLYITYYPTDKDTYKYWLEL-GIRKDRLIPL--KSNFWQIGP-GPSGPCTEIFFD 171

Query: 179 QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLER 232
           +GE              E  R+IEIWN+VF Q+    K   ++   LP  +IDTG GLER
Sbjct: 172 RGEKYDKRNKELIIEDLENNRFIEIWNIVFSQYNCDPKLSIEQYQELPNKNIDTGAGLER 231

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A +LQE  NN++ DLF  LI++  +++ + Y   +    ++I DHL++  F I DG   
Sbjct: 232 LAAILQEADNNFETDLFFPLIKSIAKLSQIPYH-QSPKAFKIIADHLKTLVFAINDGATL 290

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NE RGYVL++++RR+    + L + +P + +L+      M   YPEL + K  I++ L 
Sbjct: 291 TNEKRGYVLKKLLRRSFIQGKKLNFNQPFLHNLVDPTINMMQDFYPELTKNKNYIKDILL 350

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            ++  F +TL                   L+G   FKLYDT+G+P D++ D         
Sbjct: 351 KQEHVFLETLKTAEAKFLYYAKKKS----LSGINFFKLYDTYGIPEDVIIDYAK-INNVS 405

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   LE+ R  ++ + + +     ++  F        ++F+GY+           
Sbjct: 406 VDYKGFKFLLEKHRQISQKNHIFISKMNQQEEKF--LNFREKSEFLGYNNF--------- 454

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          + + V  +  +G             +V  QTPFYA  GGQ+ D G
Sbjct: 455 --------------ALKTKVIKVFDKG-------------IVLAQTPFYAPMGGQIADEG 487

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G  ++                H     G       +   ID + R Q+S +H+ATHL
Sbjct: 488 FIDGKKVKNITKLPNG-------QHLHQIEGSFYEGQEVFAQIDKKVRDQISYHHTATHL 540

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L   L   LGSH+ + GS +  + LR+D  H + +T  +L  IE  +N +I +NL V  +
Sbjct: 541 LETVLQNELGSHLEKQGSSVGYNSLRYDFNHFEKLTPEKLIKIEKEINGLIKKNLSVEIQ 600

Query: 653 IMNREDAIASG---AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            +  ++A  +     +     KY D VR+V +    G   S  LCGGTH S T  +    
Sbjct: 601 KIPTQEAKENYSDILSKNPKAKYKDEVRIVRI----GNDFSIDLCGGTHASETKNLEKFV 656

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL--KVSQGNV------VGRVE 761
           I+S  +I +GI RIEA+ G   ++ L+ + +  +     L  K     +      V ++ 
Sbjct: 657 ILSYETISSGIYRIEAVCGNNIKTALVDKLKPYQLTVKQLIQKAQTKKLFFEALPVPQIN 716

Query: 762 E-------IWEEYRKLQLIH---AK-------RKLQLNVEDLSCHKIADVNFMSHIISEV 804
           +            ++LQ       K       +K+    +     KI+    +  I  ++
Sbjct: 717 QSYQDILDYQNYLKELQKQIFICEKKDLEYRCKKMIQEKDKFLPEKISKETLII-IEEDI 775

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           + + LK  MD +   ++  I+ +  ++  K   +           ++A  L +  +  L 
Sbjct: 776 NMEVLKCFMDNIFDTLKIDILFICQLNLSKVVFLC------KSKTWHAGKLVKEISS-LA 828

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            G GGG   +AQ G        Q I  + 
Sbjct: 829 LGSGGGNAFLAQGGSKTTQTIKQTIKTLK 857


>gi|319777240|ref|YP_004136891.1| alanyl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|318038315|gb|ADV34514.1| Alanyl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 873

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 266/901 (29%), Positives = 434/901 (48%), Gaps = 89/901 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  +L +F+  GH  + S SLIP NDP+L++ NSG+   K+ F+G++KP    +T
Sbjct: 5   TSKEIREKWLRYFESKGHLRVESKSLIPVNDPSLLWINSGVATLKDYFSGKKKPPRNRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI   ++ LT E  +D 
Sbjct: 65  NSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGDYFKKEAIAFGYEFLTNELQIDP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++LY+T + ED +  K W +  G+    +I  T + NFW +  +GPCGP +EIF+D+G  
Sbjct: 121 KKLYMTYFAEDLDTKKYWMEQ-GVEESHLIPGTRDTNFWDVG-SGPCGPDTEIFYDRGPK 178

Query: 183 IPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L     E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+++Q+
Sbjct: 179 YNKRGLELLKKDIENDRYIEIWNIVFSQFNNDGENNYTELKQKNIDTGAGLERIASIMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIAD 288
              NYD DLF ++I+  E+   +KY+ +N             N +VI DH+R+    IAD
Sbjct: 239 APTNYDSDLFINIIKEIEKYATVKYDIDNYFKKDKKQTEINTNFKVIADHIRTVVNAIAD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G   +N GRGY++RR++RR++     LG     +  L+  +   +   Y +         
Sbjct: 299 GAKVSNVGRGYIIRRLIRRSIYKGMQLGVKGLFLHKLVDVVQDSLPYEYDKKPVVVA--- 355

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             ++ E+  F +T+++G +LL+  + +  K +I +G+ AF L +T+G P+++  +IL  +
Sbjct: 356 --IKEEELAFHQTIEKGKLLLEKFMDN--KTKIFSGEDAFNLLETYGFPIELTVEILAKK 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT-QFIGYDLLRGSK 467
            +  +D+ +F +     + R    S G      +K+  SL    G   +FIGY  L    
Sbjct: 412 NIK-VDLKAFEE----AKERHANLSRGEKVNGMDKVINSLALIKGKIGEFIGYTDLES-- 464

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S +  ++   E V+      +  ++ D+TPFYA +GGQ
Sbjct: 465 ---------------------KSKILKLLNNEEEVKSLNG--EGYLILDKTPFYATSGGQ 501

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  +    +++I DV K     F +H     G +  + ++   +D + R  ++  H
Sbjct: 502 NHDHGFILQGKNKIKILDVFKDK---FGNHIHKIEGKINNKDTVECYVDKEVRIGMARGH 558

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLL  AL  +LG H+ Q GS IT + L FD    +  T  ++K IED ++  I QN+
Sbjct: 559 SATHLLFRALVKVLGPHIDQLGSDITEERLIFDFPADEKPTDEQIKKIEDIMHGWIKQNV 618

Query: 648 PVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                + N + A   GA   +   +Y D   +  V   D    +  LCGGTH+  TG + 
Sbjct: 619 EREYIVTNIKKAKEMGAIMTIDESEYMDPNNIRIV---DFKGITKDLCGGTHLDRTGILE 675

Query: 707 LLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKS-LASFLK-------------V 751
              I       AG+ RI A+   +  + +L   ++ LK  L + +K              
Sbjct: 676 DFKITKVEKKTAGVFRIRAVASHKYVKQYLTELNQSLKEQLDALVKKAQSFDSKYQIKFT 735

Query: 752 SQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
              +V      +++  ++  +      K K  +  +  S     +  +  ++  + DS +
Sbjct: 736 PNKDVEIECANIKKTIDKVHEDIKELIKNKSNITFDFDSVQLTKNKKYPYYLNIDFDSSQ 795

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           +K     L++K    II+L   S  +    +           +A  L +  A    G GG
Sbjct: 796 VKVAAATLREKFPEAIIVLGAKSNNQILLCVAA------KVLDANKLFQQIASKTNGRGG 849

Query: 869 G 869
           G
Sbjct: 850 G 850


>gi|238809909|dbj|BAH69699.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 875

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 266/901 (29%), Positives = 434/901 (48%), Gaps = 89/901 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  +L +F+  GH  + S SLIP NDP+L++ NSG+   K+ F+G++KP    +T
Sbjct: 7   TSKEIREKWLRYFESKGHLRVESKSLIPVNDPSLLWINSGVATLKDYFSGKKKPPRNRLT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI   ++ LT E  +D 
Sbjct: 67  NSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGDYFKKEAIAFGYEFLTNELQIDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++LY+T + ED +  K W +  G+    +I  T + NFW +  +GPCGP +EIF+D+G  
Sbjct: 123 KKLYMTYFAEDLDTKKYWMEQ-GVEESHLIPGTRDTNFWDVG-SGPCGPDTEIFYDRGPK 180

Query: 183 IPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L     E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+++Q+
Sbjct: 181 YNKRGLELLKKDIENDRYIEIWNIVFSQFNNDGENNYTELKQKNIDTGAGLERIASIMQD 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIAD 288
              NYD DLF ++I+  E+   +KY+ +N             N +VI DH+R+    IAD
Sbjct: 241 APTNYDSDLFINIIKEIEKYATVKYDIDNYFKKDKKQTEINTNFKVIADHIRTVVNAIAD 300

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G   +N GRGY++RR++RR++     LG     +  L+  +   +   Y +         
Sbjct: 301 GAKVSNVGRGYIIRRLIRRSIYKGMQLGVKGLFLHKLVDVVQDSLPYEYDKKPVVVA--- 357

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             ++ E+  F +T+++G +LL+  + +  K +I +G+ AF L +T+G P+++  +IL  +
Sbjct: 358 --IKEEELAFHQTIEKGKLLLEKFMDN--KTKIFSGEDAFNLLETYGFPIELTVEILAKK 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT-QFIGYDLLRGSK 467
            +  +D+ +F +     + R    S G      +K+  SL    G   +FIGY  L    
Sbjct: 414 NIK-VDLKAFEE----AKERHANLSRGEKVNGMDKVINSLALIKGKIGEFIGYTDLES-- 466

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S +  ++   E V+      +  ++ D+TPFYA +GGQ
Sbjct: 467 ---------------------KSKILKLLNNEEEVKSLNG--EGYLILDKTPFYATSGGQ 503

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  +    +++I DV K     F +H     G +  + ++   +D + R  ++  H
Sbjct: 504 NHDHGFILQGKNKIKILDVFKDK---FGNHIHKIEGKINNKDTVECYVDKEVRIGMARGH 560

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLL  AL  +LG H+ Q GS IT + L FD    +  T  ++K IED ++  I QN+
Sbjct: 561 SATHLLFRALVKVLGPHIDQLGSDITEERLIFDFPADEKPTDEQIKKIEDIMHGWIKQNV 620

Query: 648 PVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                + N + A   GA   +   +Y D   +  V   D    +  LCGGTH+  TG + 
Sbjct: 621 EREYIVTNIKKAKEMGAIMTIDESEYMDPNNIRIV---DFKGITKDLCGGTHLDRTGILE 677

Query: 707 LLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKS-LASFLK-------------V 751
              I       AG+ RI A+   +  + +L   ++ LK  L + +K              
Sbjct: 678 DFKITKVEKKTAGVFRIRAVASHKYVKQYLTELNQSLKEQLDALVKKAQSFDSKYQIKFT 737

Query: 752 SQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
              +V      +++  ++  +      K K  +  +  S     +  +  ++  + DS +
Sbjct: 738 PNKDVEIECANIKKTIDKVHEDIKELIKNKSNITFDFDSVQLTKNKKYPYYLNIDFDSSQ 797

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           +K     L++K    II+L   S  +    +           +A  L +  A    G GG
Sbjct: 798 VKVAAATLREKFPEAIIVLGAKSNNQILLCVAA------KVLDANKLFQQIASKTNGRGG 851

Query: 869 G 869
           G
Sbjct: 852 G 852


>gi|83775369|dbj|BAE65489.1| unnamed protein product [Aspergillus oryzae]
          Length = 939

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 268/892 (30%), Positives = 418/892 (46%), Gaps = 93/892 (10%)

Query: 74  HNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE- 132
             DLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+L+TK + LD +RLY+T ++  
Sbjct: 71  FEDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAINYSWELMTKIYGLDPQRLYVTYFEGS 130

Query: 133 -------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
                  D EA +LW K  G+  D I+     DNFW M + GPCGPCSEI +D+      
Sbjct: 131 KEGGLSPDLEAKELW-KAVGVPEDHILPGNMKDNFWEMGDQGPCGPCSEIHYDRI-GGRN 188

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                +++    +EIWN VF+Q+ +++ +    LP   +DTGMG ER+ +VLQ K++NYD
Sbjct: 189 ASNLVNQDDPNVLEIWNNVFIQYNRESDRSLKPLPNKHVDTGMGFERLVSVLQNKSSNYD 248

Query: 246 IDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            D+F  L Q  + +          G++        +RV+ DH+R+ +F I+DG+ P NEG
Sbjct: 249 TDVFSPLFQTIKDITGARPYQGRFGVEDADGIDTAYRVVADHVRTLTFAISDGVAPNNEG 308

Query: 297 RGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           RGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ + +  + E L  E
Sbjct: 309 RGYVIRRVLRRGARYARKYFRVEIGNFFSKIVPTLVDQMGDMFPEVKRKQQDVMEILDEE 368

Query: 355 DERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F KTLDRG    +     +    D+ L+G   ++LYDT G P+D+ + +   RGL  
Sbjct: 369 EISFAKTLDRGERQFEHYAQQAKAKGDDKLHGADVWRLYDTFGFPVDLTRIMAEERGLRI 428

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
            D           RSRA+  S G      + +   + +                K  K +
Sbjct: 429 DDTEFEEA-----RSRAKEASKGQKKAAADTVKLDVHDLG--------------KLEKMN 469

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          +++ VKAI          E+   G ++ ++ D+T FYAE GGQ  
Sbjct: 470 DVPKTNDSAKFDRGNITAQVKAIYHGKSFHLSTEQIPEGDQLGLILDRTNFYAEQGGQEN 529

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG  + DG         +   G  +H   ++ G L     ++   D   R  +  NH+ 
Sbjct: 530 DTGRIVIDGQAELEVGDVQLYAGYVLHTGFMKYGSLSVGDEVICEYDELRRWPIRNNHTG 589

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           TH+L+ AL  +LG  V Q GS +  + LRFD +H  P+T  +L+ IED   + I QN  V
Sbjct: 590 THILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKSPVTDKDLERIEDISTEYIRQNCAV 649

Query: 650 V-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSALCGGT 697
               +        SG  A+ G  Y D VRVVSV                   S   CGGT
Sbjct: 650 YSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVELEEILKNVKDPRWEKVSIEFCGGT 709

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------------------GQ 738
           HV  TG+I  L I+ ES I  GIRRI A+TG+ A                         +
Sbjct: 710 HVQKTGDIKELVILEESGIAKGIRRIIAVTGEDAHEVQRVALGFEKRLDRLEAMALGPEK 769

Query: 739 DEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++  K +   L     + V +           ++I +  +  Q + +K+ L+        
Sbjct: 770 EQDAKQIQVDLSQLLISAVQKSRFRERFAHINKQIIDSQKAQQKLESKKALEAITSYFEN 829

Query: 789 HKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII-MLVGISKEKKASVLIVVTEDL 846
            +  D +++   +    ++K +   ++ ++ K+Q   + +L   S + +      +++  
Sbjct: 830 PENKDKSWLVARLPISANAKAVSESLNHVKSKLQDKTVYVLAADSNQGRVVHGCYMSK-- 887

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
               +A D A + +  +GG  GG  P      G N +K D+AIA  + +L K
Sbjct: 888 --GASASDWAAIVSTAVGGKAGGKGPTS-IGNGTNPDKTDEAIALASDYLSK 936


>gi|325136739|gb|EGC59339.1| alanyl-tRNA synthetase [Neisseria meningitidis M0579]
 gi|325201730|gb|ADY97184.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240149]
 gi|325208526|gb|ADZ03978.1| alanyl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 989

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 204/392 (52%), Positives = 271/392 (69%), Gaps = 11/392 (2%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG         + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAA-FSMEEPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  I E L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIMEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILN 383
           R+E+ RFG+TL++G+ L + V + L  ++I +
Sbjct: 360 RAEESRFGETLEKGMGLFNQVYNELKFNQIFD 391



 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 168/521 (32%), Positives = 253/521 (48%), Gaps = 45/521 (8%)

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           LNG+  FKLYDT+G P D+  DI   R    +D   F + +E QR+RARA      +   
Sbjct: 503 LNGEHIFKLYDTYGFPYDLTADICRERN-IELDEAGFEREMEAQRTRARAAQSFKANA-- 559

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
                 L      T+F GY                             S V A+ + GE 
Sbjct: 560 -----QLPYDGQDTEFKGYSE-----------------------RQTESKVLALYKDGEQ 591

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V E   G +  +V D TPFYAE+GGQ+GD G       R ++ D QK    +F    +  
Sbjct: 592 VNELNEGDEGAIVIDFTPFYAESGGQVGDVGYIFAGENRFEVRDTQKIKAAVFGQFGVQT 651

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   S+   +D + R     NHSATHL+H AL  +LG HV Q GS +T +  RFD+
Sbjct: 652 SGRLKVGDSVTAKVDDEIRNANMRNHSATHLMHKALRDVLGGHVEQKGSLVTAESTRFDI 711

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H + +T+ E+  +E  VN+ +  N+ V   IM+ EDA  +GA  L G KY + VRV+ +
Sbjct: 712 SHPQAVTAEEIAEVERRVNEAVLANVAVNAAIMSMEDAQKTGAMMLFGEKYGEEVRVLQM 771

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                   S+ LCGGTHVS TG+I L  I+SE  I AG+RRIEAITG  A      Q+  
Sbjct: 772 GG-----FSTELCGGTHVSRTGDIGLFKIISEGGIAAGVRRIEAITGLNALKWAQEQERL 826

Query: 742 LKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVN 795
           +K + +  K     +V+ +++      + L+   A+ K +L V            +    
Sbjct: 827 VKDIIAETKAQTEKDVLAKIQAGAAHAKALEKELARAKAELAVHAGAKLLDDAKDLGAAK 886

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            ++  I    +  L+ ++  L  K  + +I+L  +  + K S+   V++ L  +  A DL
Sbjct: 887 LVAAQIEAD-AAALREIVTDLTGKSDNAVILLAAV-NDGKVSLCAGVSKPLTGKVKAGDL 944

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + +A+ + GG GGGRP +AQ+GG +  K    +  V  ++
Sbjct: 945 VKFAAEQV-GGKGGGRPDLAQAGGTDAGKLPAVLDSVKDWV 984


>gi|326391983|ref|ZP_08213484.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325991968|gb|EGD50459.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 494

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 217/518 (41%), Positives = 316/518 (61%), Gaps = 37/518 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + VTT 
Sbjct: 7   NEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L   R
Sbjct: 67  QRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEILKLPVDR 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++++Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGP SEI+FD+GE   
Sbjct: 123 LWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEKG 181

Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P      + +R+IE WNLVF QF +  +     LP  +IDTGMGLER+AT++Q   +
Sbjct: 182 CGKPTCGVGCDCDRFIEFWNLVFTQFNKDERGNYHRLPNPNIDTGMGLERIATIMQGVDS 241

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D+ + +     ++  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGYV
Sbjct: 242 IFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I+  ++ E+ERF +
Sbjct: 302 LRRLLRRAARHGKLLGINDTFLYKVVDSVIENYGEAYPEIIERKDYIKRIIKLEEERFKE 361

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+GL +L   +S L      +L G  AFKLYDT+G PLD+ ++IL   G+  +D   +
Sbjct: 362 TIDQGLTILQDYISELKVQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEEGY 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + LE+QR RAR+      S   + I+ +L +    T+F+GYD                 
Sbjct: 421 TKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDTYESD------------ 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                      S V AIV+  E+VEEA +G  V ++ D
Sbjct: 467 -----------SKVLAIVKDEELVEEAEAGDDVSIILD 493


>gi|15829028|ref|NP_326388.1| alanyl-tRNA synthetase [Mycoplasma pulmonis UAB CTIP]
 gi|81620588|sp|Q98Q12|SYA_MYCPU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|14089972|emb|CAC13730.1| ALANYL-TRNA SYNTHETASE (ALANINE--TRNA LIGASE) (ALARS) [Mycoplasma
           pulmonis]
          Length = 873

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 252/916 (27%), Positives = 411/916 (44%), Gaps = 99/916 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  ++ FF+   H  L S SLIP +DP+L++ NSG+   K+ F+G++ P    
Sbjct: 1   MLSSKEIRQKWITFFESKNHLKLESKSLIPVDDPSLLWINSGVATLKDYFSGKKTPPSPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ A+  A + +     L
Sbjct: 61  IVNSQKSIRT----NDIENVGITARHHTFFEMLGNFSIGDYFKKEALAFAKEFVLDVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +LY T Y ED E  ++W  + G     +I  +   NFW +   GPCGP +EIF+D+G
Sbjct: 117 EKEKLYFTYYHEDLETKQIWLDL-GFDPSHLIAGSRKTNFWDVG-MGPCGPNTEIFYDRG 174

Query: 181 ECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                    L     E +RYIEIWN+VF  F    K     L   +IDTG G ER+ ++L
Sbjct: 175 PKYDPRGVELLKEDIENDRYIEIWNIVFSTFNNDGKNNYSELKLKNIDTGAGFERIVSIL 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLI 286
           Q    NYD DLF  +I+A E++T  KY   N               ++I DH+RS +  I
Sbjct: 235 QNAPTNYDTDLFLPIIRAIEKLTNKKYVVENYFQNEPVQREINTYFKIIADHMRSVANAI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGY-TEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG   +N GR Y++RR++RRA      LG   E  +  L+P +   +   Y        
Sbjct: 295 GDGAGVSNVGRDYIIRRLIRRAYRTGIQLGIKDEAFLYKLVPVIKDSLIFDYD-----TK 349

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            + + ++ E+  F KT+D+G  +L+         + ++  + FK++DT+G P+++ +++ 
Sbjct: 350 HVAKVIKDEELLFSKTIDQGKKILEKEFEK---SKKIDASIVFKMFDTYGYPVELTKEMA 406

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G+         +   ++         G G         ++ +K    +F+GYD L  
Sbjct: 407 KEKGVEISLEE--FEKYRQEHELKSKSKKGDGMKKVINFLANIDKKVD--EFVGYDTLE- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  +S +  +      + +     +   + D+TPFYA +G
Sbjct: 462 ----------------------TTSKILYLFNSESKLNKLEG--QGYFILDKTPFYATSG 497

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G    DG + +I +V K       +H  + +G + +   L   +D +NR+ L  
Sbjct: 498 GQKHDQGYVEQDGKKFKILEVFKDKNW---NHVHLVKGEIDSSKELKCVVDAKNRKNLER 554

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLL   L   +G  V Q GS      L FD       +  ++K IE  V  II  
Sbjct: 555 NHSATHLLFKVLRDQIGPFVVQLGSNNNEKRLTFDFPSQNKPSKEKIKEIEKQVRKIIEL 614

Query: 646 NLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++         + A   GA   +   +Y D   V  V +++    +S LCGGTH+ +T  
Sbjct: 615 SIDRQYSNETIDKAKEMGAIITIEETEYMDPTNVRIVTFKN---ITSDLCGGTHIPNTKL 671

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLM---------GQDEKLKSL---------- 745
           I    I+S  +   GI RI AIT ++                Q   +K +          
Sbjct: 672 IENFKIISVENKGTGIFRISAITTEKLVRAFNQEHFDNLIEQQQNIIKKIQKINPSFKYK 731

Query: 746 ----ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
               +  L+  Q  V   +  + +E++K     ++  +++N E+L    IA+     ++ 
Sbjct: 732 NQFKSDDLEQRQVEVEESILALQQEFKKALK--SQENVEINFENLEFENIANYKVYINL- 788

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
            E D   +K+    L++K    +I+L  + K      +         ++++  +  L   
Sbjct: 789 -EADKNTIKAQGAQLREKFDDLLIILASVEKNSTILTIAS------KKYDSNKIFNLLKS 841

Query: 862 VLGGGGGGGRPHMAQS 877
                 GGG   + Q 
Sbjct: 842 EYSL-KGGGNAILVQG 856


>gi|72080540|ref|YP_287598.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 880

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 266/918 (28%), Positives = 439/918 (47%), Gaps = 87/918 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + +
Sbjct: 1   MSANKIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD
Sbjct: 61  VNSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G 
Sbjct: 117 PKNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGP 174

Query: 182 CIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                   L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ
Sbjct: 175 KFDSRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIA 287
           +   NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I 
Sbjct: 235 DGPTNYDTDLFLPIIAEIEKSTVFQYKIENYFLKEPRQTQINKSFRIIADHIRAITLAIN 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+N  RGY++RR++RRA    + LG + P +  L+  +   +     +       I
Sbjct: 295 DGVQPSNLHRGYIIRRLIRRAYWNGKKLGISHPFLYKLVEIVGKTL-----DYRFDIQTI 349

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + + +E+E F KTL+ G  LL+  L        +     FKL++T+G P+++ ++IL  
Sbjct: 350 SKIILNEEENFAKTLEIGYNLLESQLK--INKNQIKPVTVFKLFETYGFPVELTKEILAE 407

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           + +        +Q +E Q   ++       +G  + I    + K   + FIGY       
Sbjct: 408 KNIDF----DLSQLVEFQEKHSQISRAKKTTGMQKVINSLTQIKAKISDFIGY------- 456

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T+ + + +  +  + E V E        V+F++TPFYA AGGQ
Sbjct: 457 ----------------HTHHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQ 500

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  I +   ++I DV K     F+++  V +G +     + L +D +NR  L  NH
Sbjct: 501 KHDQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNH 557

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  +L    GS + Q GS    + L FD   ++  +  E+KS+E+ +N  I Q +
Sbjct: 558 SGTHLLFASLRQEFGSEIKQLGSDNNENRLTFDFPLNRKPSDQEIKSVENRINSYINQKI 617

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
                + N E+A    A   L          + +   D    ++ LCGGTH+ +T  +  
Sbjct: 618 KRKYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFD--KITTDLCGGTHIENTELLEK 675

Query: 708 LYIVSESSIRAGIRRIEAITG-QRARSHLMGQ-DEKLKSLASFLKVSQGNVV-------- 757
             I+S  S  +GI RI A+T   +    L G+  E L  +++ LK     +         
Sbjct: 676 FTILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISA-LKNKIKKIEPNFGLNLP 734

Query: 758 ---------GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSK 807
                      +++I ++ +       K +L++   +L  +KI ++   S  +   +   
Sbjct: 735 NLVDLEQQFDYLKKIEDDLKIYYKKLLKSQLRIVKSELDANKIIEIGKFSFYLDFNLPLH 794

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            LK +    +++      +L       +   LI+V+  +L       +     ++   G 
Sbjct: 795 NLKQIAATWREQNPRISFILGANLVNNE--FLIIVSSAILAS---NQILEKILEIFT-GS 848

Query: 868 GGGRPHMAQSGG-PNGNK 884
           GGG   +AQ        K
Sbjct: 849 GGGNYKIAQGKIQKKPEK 866


>gi|116515185|ref|YP_802814.1| hypothetical protein BCc_254 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285419|sp|Q057H8|SYA_BUCCC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116257039|gb|ABJ90721.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 881

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 276/888 (31%), Positives = 450/888 (50%), Gaps = 57/888 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF++  H++  SSSLIP +D +L+FTN+GM  FK I+   +K    ++
Sbjct: 1   MKTDKIRAMFLQFFKEKNHKIFKSSSLIPKDDNSLLFTNAGMNQFKKIYLKNKKKNQLSI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T Q C+R GGKH+DL  VG T  HHT FEMLGNFSFG YFKE AI+ AW+ LT  K  +
Sbjct: 61  ATSQYCIRTGGKHDDLKKVGHTPYHHTLFEMLGNFSFGEYFKENAIKYAWEFLTHKKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L +++++IT Y  D E  K+W  I  +    +I+I          DNFW M + GPCGP 
Sbjct: 121 LSKKKIWITYYYNDNETKKIWLNIIKIKNTHLIKIYDKKNIKYNSDNFWKMGDLGPCGPS 180

Query: 173 SEIFFDQGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           +EIF+ Q +       +    E  +  +EIWNLVFM+F Q  K++   LP  SIDTGMGL
Sbjct: 181 TEIFYYQKKNRKEKKSIKSYKELEKYCLEIWNLVFMEFNQITKKKIIKLPIPSIDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ +LQ   + +  + F  LI+A ++   +K +  N V+ ++I DH+R+S+ LIA+ I
Sbjct: 241 ERISVILQNVKSIFHTNNFIQLIEAIKKKIKIKIKKKNNVSLKIISDHIRTSTCLIAENI 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI--QAKLLIE 348
           LP NEGR YVLR+I+RRA+C+   +G  +P    L   +   M     +    +    I+
Sbjct: 301 LPGNEGRNYVLRKIIRRALCHGYFIGLQKPFFYKLSELIIYNMKKMNYDFHIQEKIHKIK 360

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+++F   L+ GL  L  ++ ++ K++I    + F LYDT+GLP+ I Q     +
Sbjct: 361 KILFYEEKQFYYILENGLQKLKKIIKNIKKNKICEQKI-FTLYDTYGLPIQITQKFCKKK 419

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            ++                  + +     +   +K  FS       + F GY +      
Sbjct: 420 NISFNINKLNLII--------KNNKKKQKNKEKKKKNFSFITFKKKSIFDGYHIYEK--- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+ + + V +    Q   ++ D TPF++++ GQ+
Sbjct: 469 --------------------KSKIIQIIYKNKNVLKLSKSQLGIIILDITPFFSKSSGQI 508

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD+G  + D     +    KK +   +H   ++ G +  +  +   I+ + R+ +  NHS
Sbjct: 509 GDSGKILNDKGIFIVQKT-KKFDNYILHIGYIKHGCINIKDIVHAKINKKKRKTIQSNHS 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL+ AL  I    + Q GS I    LRFD   +K +T  ++  +E+ +N  I +N+P
Sbjct: 568 ATHLLNAALCKIFSEKIIQKGSFINDKYLRFDFFCNKTLTEEKINYLENIINKKIQKNIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +   I + + A       LL  KY   VR++ ++       S  LC GTH  +TG+I   
Sbjct: 628 INFVITSFKKAKKKKIKFLLEKKYKKTVRIIYIKN-----FSIELCNGTHHDNTGKIGCF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I++ ++I   I+RI AITG     +   +D+  K L +    +  N+    + I  + +
Sbjct: 683 KIIAYNNIGNEIKRITAITGMEVIQYFNDKDKINKKLENLFSTNIHNIYLIAKNIVNKNK 742

Query: 769 KLQLIHAKRKLQ--LNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           KL   + K K +  + +  +   K         +    S ++ K L+ + D L++K++S 
Sbjct: 743 KLLEENIKLKNKNIIEISKILISKAYLSNKKFLIIEKTSYIEYKLLRKLSDILKEKLKSL 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           I++L+     KK + LI +T++L    N  ++  +   V+ G GGG +
Sbjct: 803 IVILIN-DNNKKINFLISITKNLKHIINLNNIKNIIFSVIPGTGGGKK 849


>gi|238063896|ref|ZP_04608605.1| alanyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237885707|gb|EEP74535.1| alanyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 636

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 366/652 (56%), Gaps = 54/652 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  +L  F+ NGH ++PS+ L   +DP L+F N+GMV F   F GQ+ P Y   
Sbjct: 1   MKTAEIKRRYLAHFEANGHAVVPSAPLPAISDPNLLFVNAGMVQFVPYFLGQQTPPYPRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK  AI LAWDL+T+     
Sbjct: 61  VSVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKAGAIPLAWDLVTRSVAEG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY +D+EA ++W+   G+ A++I+R    DNFWSM   GP GPCSE++
Sbjct: 117 GFGLDPERVWATVYLDDDEAAEIWRS-VGMPAERIVRRGKKDNFWSMGIPGPAGPCSELY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+E WNLVFMQ+E      +++ +    LPK +IDTGMGL
Sbjct: 176 YDRGPDY-GREGGPEVDEDRYLEFWNLVFMQYEIADVTSKEDFRIVGELPKKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  + ++  + ++TG +Y             + V  RVI DH+R
Sbjct: 235 ERMASILQGVDNLYEIDEVRPILARAAELTGKRYGAHSGHVAAQSHPDDVRLRVIADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           ++  LI DG+ P+NEGRGYVLRRIMRRA+   RLLG+ E  +  LLP     M  +YPEL
Sbjct: 295 TALMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGWQERALPELLPVARDCMAPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398
                 I +   +E++ F  TL  G  +LD  ++         L+GD AF+L+DT+G P+
Sbjct: 355 ATEFDRIAQYAYAEEDAFLATLRAGTTILDTAIAETKSAGKPALSGDKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +GL  +D   F + + +QR+RA+A +    +G T+   + S+ +  G  +F
Sbjct: 415 DLTLEIAAEQGL-AVDADGFRRLMADQRARAKADARARKTGHTDLSAYRSVLDAGGPVEF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY  L                          S V+A++  G+ V  AV G  VE+V D 
Sbjct: 474 TGYTEL-----------------------NRESRVRAVLSGGDQVGAAVEGDTVELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R   +    ID 
Sbjct: 511 TPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRARVVRGEVRAGENGYAEIDV 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  
Sbjct: 571 TRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAP 622


>gi|54020387|ref|YP_115693.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|81603668|sp|Q601M2|SYA_MYCH2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|53987560|gb|AAV27761.1| alanyl tRNA synthetase [Mycoplasma hyopneumoniae 232]
          Length = 883

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 268/917 (29%), Positives = 439/917 (47%), Gaps = 87/917 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + + 
Sbjct: 5   SANEIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD 
Sbjct: 65  NSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G  
Sbjct: 121 KNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSKKTNFWDLGQ-GPCGPCSEIYFDRGPK 178

Query: 183 IP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ+
Sbjct: 179 FDSRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYAPLKSKNIDTGAGFERIVSILQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIAD 288
              NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I D
Sbjct: 239 GPTNYDTDLFLPIIAEIEKNTVFRYKIENYFLKKPRQTQINKSFRIIADHIRAITLAIND 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY++RR++RRA    + LG + P +  L+  +   +     +       I 
Sbjct: 299 GVQPSNLHRGYIIRRLIRRAYWNGKKLGISHPFLYKLVEIVGKTL-----DYRFDIPTIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + + +E+E F KTL+ G  LL+  L        +     FKL++T+G P+++ ++IL  +
Sbjct: 354 KIILNEEENFAKTLEIGYNLLESQLK--INKNQIKPVTVFKLFETYGFPVELTKEILAEK 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +        +Q +E Q   ++       +G  + I    + K   + FIGY        
Sbjct: 412 NIDF----DLSQLVEFQEKHSQISRAKKTTGMQKVINSLTQIKAKISDFIGY-------- 459

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T+ + + +  +  + E V E        V+F++TPFYA AGGQ 
Sbjct: 460 ---------------HTHHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQK 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  I +   ++I DV K     F+++  V +G +     + L +D +NR  L  NHS
Sbjct: 505 HDQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHS 561

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THLL  +L    GS + Q GS    D L FD   ++  +  E+KS+E+ +N  I Q + 
Sbjct: 562 GTHLLFASLRQEFGSEIKQLGSDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIK 621

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
               + N E+A    A   L          + +   D    ++ LCGGTH+ +T  +   
Sbjct: 622 RKYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFD--KITTDLCGGTHIENTELLEKF 679

Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQ-DEKLKSLASFLKVSQGNVV--------- 757
            I+S  S  +GI RI A+T   +    L G+  E L  +++ LK     +          
Sbjct: 680 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISA-LKNKIKKIEPNFGLNLPN 738

Query: 758 --------GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKE 808
                     +++I ++ R       K +L++   +L  +KI ++   S  +   +    
Sbjct: 739 LVDLEQQFDYLKKIEDDLRIYYKKLLKSQLRIAKSELDANKIIEIGKFSFYLDFNLPLHN 798

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           LK +    +++      +L       +   LI+V+  +L       +     ++   G G
Sbjct: 799 LKQIAATWREQNPRISFILGANLVNNE--FLIIVSSAILAS---NQILEKILEIFT-GSG 852

Query: 869 GGRPHMAQSGG-PNGNK 884
           GG   +AQ        K
Sbjct: 853 GGNYKIAQGKIQKKPEK 869


>gi|68074667|ref|XP_679250.1| alanine--tRNA ligase [Plasmodium berghei strain ANKA]
 gi|56499954|emb|CAH95111.1| alanine--tRNA ligase, putative [Plasmodium berghei]
          Length = 1076

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 267/1042 (25%), Positives = 454/1042 (43%), Gaps = 160/1042 (15%)

Query: 2    SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
                 +R  F+ +F+   H ++ S+S+IP ND TL+FTN+GM  FK IF G         
Sbjct: 48   MTSEQVRNNFINYFKNKDHTIVDSASVIPYNDNTLLFTNAGMNQFKKIFLGNVDKNSDLG 107

Query: 59   --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I+ AWDLLT 
Sbjct: 108  KLKRCVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIEYAWDLLTN 167

Query: 117  EFDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
             + ++  RLY+T +           D EA K+W K   L   +I+     DNFW MAETG
Sbjct: 168  VYKINPNRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDEKRILPFGMKDNFWEMAETG 225

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPCSEI +D+           +++    +EIWN+VFMQ+ +   +    LP   IDTG
Sbjct: 226  PCGPCSEIHYDRIGNRD-ASDLVNKDDPSVLEIWNIVFMQYNKDENKNMNKLPSPCIDTG 284

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-----------GMKYEGNNIVNHRVIV 276
            MGLER+ ++LQ   +NYD DLF  + +  +++              +        +RVI 
Sbjct: 285  MGLERITSILQNVQSNYDTDLFTPIFKQIKEIFNDNIPSYQGKINEQDPDKIDYAYRVIS 344

Query: 277  DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP---LMMHLLPALCTEM 333
            DH+R ++  I+DG +P+NEGR YV+RRI+RRA+   + +   +        L+ ++C  +
Sbjct: 345  DHIRCATIAISDGCIPSNEGRNYVIRRIIRRAIRVGKQVFNIKSNVLWFYKLVDSVCKIL 404

Query: 334  GSAYPE--LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-----ILNGDV 386
            G+ + +    +    I+  +  E+  F KTL++G+   + ++    ++      + +G  
Sbjct: 405  GNCFKDLQNEEKVNYIKNVIMQEELIFNKTLEKGVDQFNKIIKRCHQNPSNNNNLFSGKD 464

Query: 387  AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
            AF LY ++G P+D+++ +   + +  +++  FN   ++ +  +  ++  +          
Sbjct: 465  AFDLYTSYGFPIDLIEIMCEEKSVK-LNMEEFNTLFKKHQLVSDTNNFKINK------VI 517

Query: 447  SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA---IVQQGEIVE 503
             L  +        Y++L    + K +     + P     N  +  +K+   I+  G  ++
Sbjct: 518  DLPVEKAHDIKCKYNVLPTIDYHKYNWNNTFEVPKSKEENKNNLRLKSSVQIIYDGNFLD 577

Query: 504  EAVSGQ-----------------KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
            E +                    K  ++  +T FY E GGQ+ DTG    + ++ Q+ +V
Sbjct: 578  EIMHTDDEAKEPLSCVKVENKQKKYALILKETNFYYENGGQIYDTGFIQNESMKFQVLNV 637

Query: 547  QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI------ 600
             +K     +H  ++  G ++    +   +D++ R+ ++ NH+ATHLL+ +L  +      
Sbjct: 638  -QKMSDYILHIGVLLSGCIKKNDIIEAVVDFERRKLIACNHTATHLLNFSLRKVLADQMN 696

Query: 601  ----------------------------------------LGSHVSQNGSCITPDGLRFD 620
                                                       +  Q GS +  + LRFD
Sbjct: 697  QKKNKCDNKDENKKVSLEDSNTIKNKLEENSSCNNNSNGSSIFNCEQKGSLVDDEKLRFD 756

Query: 621  VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
             +  + I +  L  IE  +N+I+ + L V  + M+  ++    G  A+    Y+D+V VV
Sbjct: 757  FSFIQNINTDVLNKIETEINNIVKEELDVSVKTMDLTESKKIKGIRAIFEEDYSDKVNVV 816

Query: 680  SVEYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
             +      V            S  LCGGTH+ +T  I    I SE SI  GI RI A+T 
Sbjct: 817  FISKNADNVLNNLDVNYTYLCSIELCGGTHIGNTKYIKEFIITSEESIGKGIHRINAVTN 876

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE------------------EIWEEYRKL 770
            ++A       D+ +            N +  V+                  +I E+   +
Sbjct: 877  KKAEEINKKFDDLVSKYKHVFDDPNENKLTDVQNYKRILKEDKFLPLIKKNKILEDLEII 936

Query: 771  QLIHAKRKLQLNVEDLSC----------HKIADVNFMSHIISEVDS--KELKSVMDALQK 818
            +    ++K     E  +               +V     + +E++   K L+ V  A   
Sbjct: 937  EKDIVEKKKNAQKELFNKAMRMGKLYATENKDNVLLDIKLFTEINGNQKVLEKVGQAY-N 995

Query: 819  KIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGR-PHMAQ 876
            K    +     I  E     ++ + + L      A    +     + G  GGG+      
Sbjct: 996  KANKNLSYFFIIHDENNTYCVLEIRDSLKCKEIQAETFMKQVMGSVEGHSGGGKNKAF-- 1053

Query: 877  SGGPNGNKADQAIAGVASFLKK 898
             G    +K           +KK
Sbjct: 1054 -GSAEKDKGTAIKQAAEEVIKK 1074


>gi|324509264|gb|ADY43900.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 603

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 196/605 (32%), Positives = 294/605 (48%), Gaps = 37/605 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + +R+ F+ FF    H  + SSS+IP  DPTL+F N+GM  FK IF G   P      
Sbjct: 6   TANEVRSAFINFFANREHTYVHSSSVIPFEDPTLLFANAGMNQFKPIFLGTVDPSSELGR 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLTKE
Sbjct: 66  LRRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCNWAWELLTKE 125

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             +   +LY++ +          D+E  ++W    GL   +++     DNFW M + GPC
Sbjct: 126 LGIPADQLYVSYFGGDEKAGLAPDDECRQIWLD-IGLPESRVLPFGMKDNFWEMGDVGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI FD+           + +    +EIWNLVFMQ+ ++       LP   ID G+G
Sbjct: 185 GPCSEIHFDRVGNRDASA-LVNADDPMVVEIWNLVFMQYNREEGGVLRELPMRHIDCGLG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+  V+Q KT+NYD D F  +  A +    ++               + +RV+ DH+R
Sbjct: 244 LERLVAVMQNKTSNYDTDAFTPIFDAIQASVCVRAYSGKVGAEDSDGIDMAYRVVADHIR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           +    ++DG  P + GRGYVLRRI+RR + YA   LG        L+P +   +G  +PE
Sbjct: 304 TLCVALSDGGRPDSTGRGYVLRRILRRGVRYANEKLGAPPGFFASLVPVVVRLLGDTFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPL 398
           L +    + + +  E+ +F KTL+RG  L    ++ L  + +   GD+A++LYDT+G P+
Sbjct: 364 LRKDPETVMDIINDEEAQFLKTLNRGRSLFQKAVAALESEAKQFPGDIAWRLYDTYGFPV 423

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQ 456
           D+ Q +   +    +D+ +F Q  ++    + A +          +     LK+    + 
Sbjct: 424 DLTQLMAEEK-QLSVDMDAFEQCRQKAVEMSSAGANKFRDTAELDVHGIAKLKKDGVPS- 481

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                    S                         V A++++G  V+   SG K  V+ D
Sbjct: 482 ------TDDSPKYDYSAVGPNDITAKYSFAKCEGQVLALLKEGTFVDSLYSGDKGAVILD 535

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ+ DTG     G    +      +  G +V       G +     L+  I
Sbjct: 536 RTNFYAEQGGQIYDTGVLTKIGDEGAEFEVSNVQMRGGYVVLVGSVEGNISIGDRLLQAI 595

Query: 576 DYQNR 580
           D    
Sbjct: 596 DEFRS 600


>gi|71893553|ref|YP_278999.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 880

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 270/918 (29%), Positives = 442/918 (48%), Gaps = 87/918 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + +
Sbjct: 1   MSANKIRQLWIDFFRERNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD
Sbjct: 61  VNSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G 
Sbjct: 117 PKNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGP 174

Query: 182 CIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                   L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ
Sbjct: 175 KFDSRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIA 287
           +   NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I 
Sbjct: 235 DGPTNYDTDLFLPIIAEIEKNTVFRYKIENYFLKEPRQTQINKSFRIIADHIRAITLAIN 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+N  RGY++RR++RRA    + LG + P +  L+  +   +     +       I
Sbjct: 295 DGVQPSNLHRGYIIRRLIRRAYWNGKELGISHPFLYKLVEIVGKTL-----DYRFDIPTI 349

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + + +E+E F KTL+ G  LL+  L        +     FKL++T+G P+++ ++IL  
Sbjct: 350 SKIILNEEENFAKTLEIGYNLLESQLK--INKNQIKPVTVFKLFETYGFPVELTKEILAE 407

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           + +        +Q +E Q   ++       +G  + I    + K   + FIGY       
Sbjct: 408 KNIDF----DLSQLVEFQEKHSQISRAKKTTGMQKVINSLTQIKAKISDFIGY------- 456

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T+ + + +  +  + E V E        V+F++TPFYA AGGQ
Sbjct: 457 ----------------HTHHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQ 500

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  I +   ++I DV K     F+++  V +G +     + L +D +NR  L  NH
Sbjct: 501 KHDQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNH 557

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  +L    GS + Q GS    D L FD   ++  +  E+KS+E+ +N  I Q +
Sbjct: 558 SGTHLLFASLRQEFGSEIKQLGSDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKI 617

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
                + N E+A    A   L          + +   D    ++ LCGGTH+ +T  +  
Sbjct: 618 KRKYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFD--KITTDLCGGTHIENTELLEK 675

Query: 708 LYIVSESSIRAGIRRIEAITG-QRARSHLMGQ-DEKLKSLASFLKVSQG--------NVV 757
             I+S  S  +GI RI A+T   +    L G+  E L  +++ LK            N+ 
Sbjct: 676 FTILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISA-LKNKIKKIEPNFGLNLP 734

Query: 758 GRV--EEIWEEYRKLQ-------LIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSK 807
             V  E+ ++  +K++           K +L++   +L  +KI ++   S  +   +   
Sbjct: 735 NLVDLEQQFDYLKKIEDDLRIYYKKLLKSQLRIAKSELDANKIIEIGKFSFYLDFNLPLH 794

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            LK +    +++      +L       +   LI+V+  +L       +     ++   G 
Sbjct: 795 NLKQIAATWREQNPRISFILGANLVNNE--FLIIVSSAILAS---NQILEKIFEIFT-GS 848

Query: 868 GGGRPHMAQSGG-PNGNK 884
           GGG   +AQ        K
Sbjct: 849 GGGNYKIAQGKIQKKPEK 866


>gi|320169841|gb|EFW46740.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 992

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 292/905 (32%), Positives = 438/905 (48%), Gaps = 99/905 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT--- 63
           IR  F+++F   GHE + SSSL+P NDPTL+F N+GMV FK+ F          +T+   
Sbjct: 88  IRRDFVQYFVDRGHEHVKSSSLVPQNDPTLLFVNAGMVQFKDRFLHPRASSSGRLTSAVS 147

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQKC+RAGGKHNDL NVG T RHHTFFEMLGNFSFGGYFKE AI LAWD LT    L + 
Sbjct: 148 VQKCMRAGGKHNDLTNVGYTPRHHTFFEMLGNFSFGGYFKETAIPLAWDYLTAHLQLPKD 207

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQGEC 182
           RL ITVY+ D+E++ +W+   G+   +I R+   DN+WSM +  GPCGPC+EI FD    
Sbjct: 208 RLMITVYETDDESYAIWRDKIGVPESRIWRLGAADNYWSMGDGPGPCGPCTEIHFDLQNG 267

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----ILPKMSIDTGMGLERMATVLQ 238
           +       + + ERY+EIWN+VFMQ ++            L    IDTGMGLER+A VLQ
Sbjct: 268 LD------ARDPERYMEIWNVVFMQEQKVASSSGQLSLAPLETKCIDTGMGLERLARVLQ 321

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------HRVIVDHLRSSSFLIADGILP 292
            K +N++ID    L  A+        + +  +         ++ DH+R++SFLIADG++P
Sbjct: 322 GKASNFEIDSLASLTAATAAAASAASQASGQLATPPTAFLNIVADHVRAASFLIADGVIP 381

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS-AYPELIQAKLLIEETL 351
           +N GRGYVLRR++RRA      +G  +P +  L+P L        YPE+   +  I   L
Sbjct: 382 SNLGRGYVLRRVIRRAAGVGLQMGLKKPFLADLVPVLLASTDPTFYPEIFARQTEICAIL 441

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F   L  G+ +L+  +      K  +L     F+L+++HG P+D+ + I   RG
Sbjct: 442 KQEEEVFSSALHSGVSMLNSEIDAAVQRKQAVLAPATVFRLHESHGFPIDLARIISTQRG 501

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
               D  +  Q + + R   R  S   GS  +                     L  +   
Sbjct: 502 -VSFDEQAIEQMVVDNREMTRQRSRATGSAAS---------------------LLTNANS 539

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           K++   L +     ++    S VK                    V DQ+P Y E GGQ+G
Sbjct: 540 KQETTQLKEAIVSSMSESRDSKVK------------------LAVVDQSPLYPEGGGQVG 581

Query: 530 DTGCAIGDGIR----LQITDVQKKAEGIFVHHAI-------VERGILRTEMSLVLTIDYQ 578
           +TG  +         +  T  +   + I +                +     + L     
Sbjct: 582 ETGDVLSSDGSTLLGVVETTSKPAGDFITIRIRPADSDVDGTAFDSIAAGGKIQLRSHAS 641

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R  +S +H+A H+L+ AL  + G+ V Q GS +T   LRFD TH   ++ A+++ +E  
Sbjct: 642 LRHVISAHHTAVHMLNAALRKMFGTTVVQAGSLVTSQRLRFDFTHKAALSDAQVEQLEAA 701

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN I    LPV T ++   +A   GA ++L   Y++ VRVV +     G  S  LCGGTH
Sbjct: 702 VNGIAQSRLPVQTEVLPLAEAQRRGAISMLNETYSENVRVVKI-----GDVSMELCGGTH 756

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ----- 753
            S++  +    IV++SS+ AG RRIEA+ G+ A + L GQ + L  +A  LKV       
Sbjct: 757 ASNSHSVFPFKIVAQSSVAAGTRRIEAVAGETAITWLAGQQQVLGRIARTLKVEPGPGVE 816

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKR------KLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
             +   V+ + ++ + +     KR      + Q     L+      V+    ++   +  
Sbjct: 817 DALNALVQRLKDQTKAIDAAMVKRASSPWNEAQELSGLLAVADTTAVSVSFRMVDSSEPS 876

Query: 808 ELKSV-MDALQKKIQSGII-MLVGISKEKKASVLIV-----VTEDL--LDRFNAVDLARL 858
              +V  + L   +Q  ++ +++G       ++         T          A  L + 
Sbjct: 877 SFANVRAERLANALQPTVVHVVIGSDNSMAVAIPAAPQLQSSTPSAPSTTPLRASALWKS 936

Query: 859 SAKVL 863
            A VL
Sbjct: 937 LASVL 941


>gi|322379407|ref|ZP_08053777.1| alanyl-tRNA synthetase [Helicobacter suis HS1]
 gi|321148116|gb|EFX42646.1| alanyl-tRNA synthetase [Helicobacter suis HS1]
          Length = 862

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 285/840 (33%), Positives = 421/840 (50%), Gaps = 78/840 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            I+  FLE+F+   H L+PSSSL+P  D +L+FTN+GMV FK+IF G+ KP     T+ Q
Sbjct: 2   DIKKAFLEYFKNLNHLLVPSSSLVPQ-DASLLFTNAGMVQFKDIFLGKAKPFCNKATSAQ 60

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG TNRHHT FEMLGNFSF  YFKE AI  A++ + +  + D + +
Sbjct: 61  LCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFFDYFKEEAIAYAFEFVHRHLNFDSKDI 120

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-P 184
           YI+V+++D+EA+KLW+K   +    I  +   DNFW MA+ GPCG CSEI+ DQGE    
Sbjct: 121 YISVHEKDQEAYKLWQKF--VPISHIKTMGDADNFWQMADVGPCGYCSEIYIDQGEKYFH 178

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   EG+R++EIWNLVFMQ+E+ +      L +  IDTGMGLER+  +L+   NN+
Sbjct: 179 SSEDYFGGEGDRFLEIWNLVFMQYERSSTGILTPLERPCIDTGMGLERVQALLEGVQNNF 238

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF+ LI   E+V  + Y  +++ + RV+ DH RS  FL+A G+   N GRGYVLRRI
Sbjct: 239 DSSLFRPLISRIEEVFDLNY-TDHLESFRVLADHARSVGFLLAMGVYFENTGRGYVLRRI 297

Query: 305 MRRAMCYARLLGY------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           +RRA+ +  LL         EP    +L  LC  M   YP L + K  IE   ++E+E F
Sbjct: 298 LRRALRHGYLLKQAQQKQLEEPFFYKILGYLCGLMPD-YPLLAEHKESIEAECKAEEELF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TLD+G+ L +  L         +G VAFKLYDT+G PLD+  D+L       +++  +
Sbjct: 357 LATLDKGMHLFESALKECSGSS-FSGAVAFKLYDTYGFPLDLTMDMLR-HKNITVNLEEY 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              ++EQ+ R++        G       +L        F+GY+                 
Sbjct: 415 QACMQEQQQRSQFKQSHAKEGFKNLDLSALV----PNVFVGYEC---------------- 454

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                    V + + A+              +  +V D+TPFYA+ GG +GD G  +   
Sbjct: 455 -------ESVQAKILALY--------LEEANRAFLVLDKTPFYAQGGGPIGDRGVILDTN 499

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             L    +  +  G      +         +   +  +  +R +++ +HSATHLLH AL 
Sbjct: 500 HVLLAQVLDTQKVGEINISFVELVEGANLGVGDSVIAEVSHRLEIAKHHSATHLLHLALR 559

Query: 599 TI---------LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
            I             + Q GS I P  LRFD +  + +   E++ IE  VN  IA  +P 
Sbjct: 560 EILGKKAREENKKVEIQQKGSHIEPSRLRFDFSFYRNLEDTEIEQIEAFVNAKIALAMPT 619

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
               M    A  SGA  L   KY ++VRVV +        S   CGG HV ++ +I    
Sbjct: 620 SVENMQALQAKESGAIMLFEDKYLEQVRVVKIAG------SVEACGGVHVQNSAQIGGFA 673

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+  SS+ AG+RRIEA+ G+     +  +   LK     LK              +  + 
Sbjct: 674 IIKVSSVSAGVRRIEAVCGEAYYDFIAQERRILKEARQKLKTH------------DILKA 721

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIML 827
           L    + +      +  + HKI   NF   ++  +     +  + +D  + + +S + + 
Sbjct: 722 LDHKQSPKSPVKPAQKPTLHKIPGQNFPLAVLKGLKEHLDDFFAFVDLYKSRQESLVALF 781


>gi|148887012|sp|Q4A8G4|SYA_MYCH7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|144575316|gb|AAZ53575.2| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 883

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/917 (29%), Positives = 439/917 (47%), Gaps = 87/917 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + + 
Sbjct: 5   SANKIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD 
Sbjct: 65  NSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G  
Sbjct: 121 KNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPK 178

Query: 183 IP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ+
Sbjct: 179 FDSRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIAD 288
              NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I D
Sbjct: 239 GPTNYDTDLFLPIIAEIEKSTVFQYKIENYFLKEPRQTQINKSFRIIADHIRAITLAIND 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY++RR++RRA    + LG + P +  L+  +   +     +       I 
Sbjct: 299 GVQPSNLHRGYIIRRLIRRAYWNGKKLGISHPFLYKLVEIVGKTL-----DYRFDIQTIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + + +E+E F KTL+ G  LL+  L        +     FKL++T+G P+++ ++IL  +
Sbjct: 354 KIILNEEENFAKTLEIGYNLLESQLK--INKNQIKPVTVFKLFETYGFPVELTKEILAEK 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +        +Q +E Q   ++       +G  + I    + K   + FIGY        
Sbjct: 412 NIDF----DLSQLVEFQEKHSQISRAKKTTGMQKVINSLTQIKAKISDFIGY-------- 459

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T+ + + +  +  + E V E        V+F++TPFYA AGGQ 
Sbjct: 460 ---------------HTHHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQK 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  I +   ++I DV K     F+++  V +G +     + L +D +NR  L  NHS
Sbjct: 505 HDQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHS 561

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THLL  +L    GS + Q GS    + L FD   ++  +  E+KS+E+ +N  I Q + 
Sbjct: 562 GTHLLFASLRQEFGSEIKQLGSDNNENRLTFDFPLNRKPSDQEIKSVENRINSYINQKIK 621

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
               + N E+A    A   L          + +   D    ++ LCGGTH+ +T  +   
Sbjct: 622 RKYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFD--KITTDLCGGTHIENTELLEKF 679

Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQ-DEKLKSLASFLKVSQGNVV--------- 757
            I+S  S  +GI RI A+T   +    L G+  E L  +++ LK     +          
Sbjct: 680 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISA-LKNKIKKIEPNFGLNLPN 738

Query: 758 --------GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKE 808
                     +++I ++ +       K +L++   +L  +KI ++   S  +   +    
Sbjct: 739 LVDLEQQFDYLKKIEDDLKIYYKKLLKSQLRIVKSELDANKIIEIGKFSFYLDFNLPLHN 798

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           LK +    +++      +L       +   LI+V+  +L       +     ++   G G
Sbjct: 799 LKQIAATWREQNPRISFILGANLVNNE--FLIIVSSAILAS---NQILEKILEIFT-GSG 852

Query: 869 GGRPHMAQSGG-PNGNK 884
           GG   +AQ        K
Sbjct: 853 GGNYKIAQGKIQKKPEK 869


>gi|322380891|ref|ZP_08054970.1| alanyl-tRNA synthetase [Helicobacter suis HS5]
 gi|321146695|gb|EFX41516.1| alanyl-tRNA synthetase [Helicobacter suis HS5]
          Length = 862

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 285/840 (33%), Positives = 421/840 (50%), Gaps = 78/840 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            I+  FLE+F+   H L+PSSSL+P  D +L+FTN+GMV FK+IF G+ KP     T+ Q
Sbjct: 2   DIKKAFLEYFKNLNHLLVPSSSLVPQ-DASLLFTNAGMVQFKDIFLGKAKPFCNKATSAQ 60

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG TNRHHT FEMLGNFSF  YFKE AI  A++ + +  + D + +
Sbjct: 61  LCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFFDYFKEEAIAYAFEFVHRHLNFDSKDI 120

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-P 184
           YI+V+++D+EA+KLW+K   +    I  +   DNFW MA+ GPCG CSEI+ DQGE    
Sbjct: 121 YISVHEKDQEAYKLWQKF--VPISHIKTMGDADNFWQMADVGPCGYCSEIYIDQGEKYFH 178

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   EG+R++EIWNLVFMQ+E+ +      L +  IDTGMGLER+  +L+   NN+
Sbjct: 179 SSEDYFGGEGDRFLEIWNLVFMQYERSSTGILTPLERPCIDTGMGLERVQALLEGVQNNF 238

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF+ LI   E+V  + Y  +++ + RV+ DH RS  FL+A G+   N GRGYVLRRI
Sbjct: 239 DSSLFRPLISRIEEVFDLNY-TDHLESFRVLADHARSVGFLLAMGVYFENTGRGYVLRRI 297

Query: 305 MRRAMCYARLLGY------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           +RRA+ +  LL         EP    +L  LC  M   YP L + K  IE   ++E+E F
Sbjct: 298 LRRALRHGYLLKQAQQKQLEEPFFYKILGYLCGLMPD-YPLLAEHKESIEAECKAEEELF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TLD+G+ L +  L         +G VAFKLYDT+G PLD+  D+L       +++  +
Sbjct: 357 LATLDKGMHLFESALKECSGSS-FSGAVAFKLYDTYGFPLDLTMDMLR-HKNITVNLEEY 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              ++EQ+ R++        G       +L        F+GY+                 
Sbjct: 415 QACMQEQQQRSQFKQSHAKEGFKNLDLSALV----PNVFVGYEC---------------- 454

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                    V + + A+              +  +V D+TPFYA+ GG +GD G  +   
Sbjct: 455 -------ESVQAKILALY--------LEEANRAFLVLDKTPFYAQGGGPIGDRGVILDTN 499

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             L    +  +  G      +         +   +  +  +R +++ +HSATHLLH AL 
Sbjct: 500 HVLLAQVLDTQKVGEINISFVELVEGANLGVGDSVIAEVSHRLEIAKHHSATHLLHLALR 559

Query: 599 TI---------LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
            I             + Q GS I P  LRFD +  + +   E++ IE  VN  IA  +P 
Sbjct: 560 EILGKKAREENKKVEIQQKGSHIEPSRLRFDFSFYRNLEDTEIEQIEAFVNAKIALAMPT 619

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
               M    A  SGA  L   KY ++VRVV +        S   CGG HV ++ +I    
Sbjct: 620 SVENMQALQAKESGAIMLFEDKYLEQVRVVKIAG------SVEACGGVHVQNSAQIGGFA 673

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+  SS+ AG+RRIEA+ G+     +  +   LK     LK              +  + 
Sbjct: 674 IIKVSSVSAGVRRIEAVCGEAYYDFIAQERRILKETRQKLKTH------------DILKA 721

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIML 827
           L    + +      +  + HKI   NF   ++  +     +  + +D  + + +S + + 
Sbjct: 722 LDHKQSPKSPVKPAQKPTLHKIPGQNFPLAVLKGLKEHLDDFFAFVDLYKSRQESLVALF 781


>gi|323455368|gb|EGB11236.1| hypothetical protein AURANDRAFT_52432 [Aureococcus anophagefferens]
          Length = 1017

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 271/784 (34%), Positives = 375/784 (47%), Gaps = 68/784 (8%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
            V  +R TF+++F +K GH  +PSS ++P  DPTL+F N+GM  FK IF GQ  P     
Sbjct: 39  TVPRVRDTFVDYFAEKRGHTRVPSSGVVPLQDPTLLFANAGMNQFKPIFLGQAAPGTQLA 98

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDL++VG    HHTFFEMLG++SFG YFK  A   A +LL  
Sbjct: 99  TLERACNSQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGSWSFGDYFKAEATAWAKELLVD 158

Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + LD  R+Y T ++         D EA  LW   +G   +++I  +  DNFW M ++GP
Sbjct: 159 VYGLDMDRMYATYFEGSPEEGLEPDYEARDLWLA-AGFKPEQVIPGSKADNFWEMGDSGP 217

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK-QERFILPKMSIDTG 227
           CGPC+E+ +D            + +    IEIWNLVF+QFE+  K +    LP   +DTG
Sbjct: 218 CGPCTELHYDALGGRGDVAHLVNMDDPTVIEIWNLVFIQFERDGKTKRLSSLPAQHVDTG 277

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLI-QASEQVT------------GMKYEGNNIVNHRV 274
           +GLER+  +L +  +NYD D F  L      ++               K +      +R 
Sbjct: 278 LGLERLVAILNQVPSNYDTDAFSGLFAATLAELPEGSAPYGGLLGDDDKAQNYRDTAYRA 337

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPA-LCTE 332
           I DH+R  SF IADG  P+NEGRGYVLRRI+RRA+ Y    LG     M  L PA   + 
Sbjct: 338 IADHVRCLSFAIADGARPSNEGRGYVLRRILRRAVRYGLSTLGAEPGFMARLAPALAASH 397

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
            G  YPEL      I E L  E+  F KTL+RG+  LD  L  L   ++L GD AF LYD
Sbjct: 398 FGDYYPELRDELPTIVEVLAEEEATFAKTLERGVKYLDEELDKLEATDVLGGDAAFFLYD 457

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           + G P+D+   +   RG   +D   F  A+  Q  R++A            +   L    
Sbjct: 458 SLGFPVDLTAQMAEERGF-LVDEPGFEAAMRAQVDRSKADRKARAEAALGTVRLEL--GV 514

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ------QGEIVEEAV 506
            AT  +G      +     D   +      D T    + V A+V          +V+ A 
Sbjct: 515 AATAALG-----DAGVAPTDALAVGATVADDATEVNGATVVALVAIDAATGDPALVDAAT 569

Query: 507 --SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
              G  V VV D TPFYAEAGGQ  D G  +  G  + + DVQ  A  +    A      
Sbjct: 570 CGPGAAVGVVLDATPFYAEAGGQASDRGSLVLGGASVDVIDVQAYAGYVVHTVASGADVA 629

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L    +    +D   RR+ ++NH  TH ++HAL   LG  V Q GS    + LRFD +H 
Sbjct: 630 LAVGDAADGVVDGDARRKHAVNHMMTHAVNHALWAELGDGVGQRGSDANDERLRFDFSHG 689

Query: 625 KPITSAELKSIEDNVNDIIAQN--LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV- 681
           K + +A+L ++E  VN     +       ++   +        A+ G  Y D V VV++ 
Sbjct: 690 KALKAAQLAAVEAAVNTEYVADGATVERAKVGLEDAKNIRALRAVFGEAYPDPVNVVAMF 749

Query: 682 ------------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                             + E     S  LCGG H+          I  E+++  G+RRI
Sbjct: 750 PKAAFAGAPTIADVLASPDDEKWDKASIELCGGNHLGDAAAAEYFVITQETAVAKGVRRI 809

Query: 724 EAIT 727
           EA+T
Sbjct: 810 EALT 813


>gi|303388536|ref|XP_003072502.1| alanyl-tRNA synthethase [Encephalitozoon intestinalis ATCC 50506]
 gi|303301642|gb|ADM11142.1| alanyl-tRNA synthethase [Encephalitozoon intestinalis ATCC 50506]
          Length = 864

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 255/878 (29%), Positives = 432/878 (49%), Gaps = 77/878 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R +FL++F    H+++ SSS+IP  D +L+FTNSGMV FK    G+     + 
Sbjct: 2   MWTTEKLRRSFLDYFASKSHKIVSSSSVIPFEDDSLLFTNSGMVQFKKNLLGERD-DLRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             +VQ+C+RAGGKHNDLD+VG+   HHT+FEM+GN+SFG YFKE AI  AW+ L     L
Sbjct: 61  ACSVQRCIRAGGKHNDLDDVGKDTYHHTYFEMMGNWSFGDYFKEEAIGFAWEFLVDVLKL 120

Query: 121 DQRRLYITVYDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++ +LY+T Y+E D+E+  +W K   L +++++  +  DNFW M +TGPCGPC+EI +D+
Sbjct: 121 NKDKLYVTYYEELDKESGNIWLKY--LPSERVLSASYKDNFWEMGDTGPCGPCTEIHYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                      +++    IEIWN+VF+++ +        L +  IDTG+GLER+ ++L +
Sbjct: 179 IGNRD-ASELVNKDDPNVIEIWNIVFIEYNRTISG-LVPLERKCIDTGIGLERLLSILID 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296
             +NY ID F  +I+A E     KY        V  RV+ DH R+ +    D +  +N+G
Sbjct: 237 VRSNYLIDSFAVIIKAIEDRCNFKYNDTEESIDVAFRVVADHCRTIAVCTYDKVDFSNDG 296

Query: 297 RGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            GYVLRRI+RRA+ YA   LG  E ++  L+      +G              + +  E+
Sbjct: 297 VGYVLRRILRRAVRYAHEVLGLKEGVLGELVGIAAHAIGIELK--------SVDCVNKEE 348

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            +F KTL +G+     +  +   +  ++G+  F LYDT+G P+D+ + +   R +  ID 
Sbjct: 349 LQFMKTLKKGIERFHKLAEN---NGKISGEDLFLLYDTYGFPVDLTEIMAKERNIK-IDY 404

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F    ++    +      +  G    I   L+ K+  T                    
Sbjct: 405 TNFESFKQKAVEIS-----KMSKGMKLNIDAGLQSKFPRT-------------------- 439

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                     N +++     ++  EI+    E   G+++ +VFD+T FYAE GGQ+GDTG
Sbjct: 440 --DDSFKYTKNSINATFFFGIEGKEIITKPNEIPEGRELGLVFDKTCFYAECGGQVGDTG 497

Query: 533 CAIGDGIRLQITDVQKKAEGIF-VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
             I       +                             +   D + R+++  NH+ TH
Sbjct: 498 KIIFYDGEKDVGVFNVMDTQAIKGFVVHKGILEGSASYQALQMYDQELRKKIMKNHTGTH 557

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL+  L TI+     Q GS + P+ LRFD    + +T+ EL+ +E  VN+ I  N  V  
Sbjct: 558 LLNFFLRTIIQ--TEQRGSLVDPEKLRFDF-EGRKLTNQELEEVEKKVNEFIQSNTDVEA 614

Query: 652 RIMNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             ++RE A+ S     +   +Y ++VRV++++    G+    +CGGTHV++  +I    I
Sbjct: 615 ITLDREQAMESPNIVRMRNEEYPEKVRVITMKA--NGLTIEEMCGGTHVTNVSDIGKFRI 672

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-----GRVEEIWE 765
           +SE+ + A  RRI A+TG++A+   M  +  L  L+    V+    +      +VE + +
Sbjct: 673 ISETGVSANTRRIVAVTGKKAQELDMEAEIYLSKLSIGEVVNVDKTIPLFYRQKVEVLNQ 732

Query: 766 EYRKLQLIH--------AKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKEL-KSVMD 814
           + +K              K  L+L  +  +   + D   + +         K+L + +  
Sbjct: 733 KNKKKGEELSRAQYAKNKKEILELIAKAKNTSNLDDKTVVYYYQPTDSCTRKDLVRFIGL 792

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTED--LLDRF 850
              + ++S +  LV +   ++  +   V+++  L+++ 
Sbjct: 793 LCGEALKSSVQCLVYVFVNEETILAGNVSDNKGLIEKI 830


>gi|321466736|gb|EFX77730.1| hypothetical protein DAPPUDRAFT_54067 [Daphnia pulex]
          Length = 992

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/855 (31%), Positives = 411/855 (48%), Gaps = 83/855 (9%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           +   IR  FL+FF +++ H  +PSSS++P  DP+L F N+GM  FK IF GQ  P +Q  
Sbjct: 16  SSKEIREKFLDFFAKEHLHSRVPSSSVVPYGDPSLAFVNAGMNQFKPIFLGQAAPQHQRA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R GGKHNDLD+VGR   HHTFFEMLG++SF  YFK+ A  +AW LLT+ + + 
Sbjct: 76  VNSQKCIRVGGKHNDLDDVGRDGYHHTFFEMLGSWSFNDYFKKEACSMAWQLLTQVYRIP 135

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            ++L+IT +          DEE  ++W  + G++AD I+     DNFW M   GPCGPCS
Sbjct: 136 PQKLFITYFGGNQSLGLPSDEECREIWLSL-GVAADHILPFGMKDNFWEMGLVGPCGPCS 194

Query: 174 EIFFDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EI  ++            ++  E  +EIWNLVFMQ+ + + Q    LP   IDTGMGLER
Sbjct: 195 EIHVNKANLETSLARTLVNQGTEEVVEIWNLVFMQYNRISNQVLEKLPAHHIDTGMGLER 254

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNIV---------NHRVIVDHLRSS 282
           +   LQ K +NYD DLF  LI A  Q++ G+ Y+G+  +          +R++ DH R  
Sbjct: 255 LVAFLQNKNSNYDTDLFLPLIDAVHQISGGVPYQGSYDMQSAQGQRDWAYRLLADHSRMI 314

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE-PLMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N  R   LRR+MR+AM  +R     +  L++ L   +   MG  YPEL 
Sbjct: 315 TVALADGAFPDNNHR---LRRVMRQAMVTSRKWFNQDASLLLELSQRVADMMGGVYPELS 371

Query: 342 QAKLLIEETLRSEDERFGKTLDR----------------------------GLVLLDGVL 373
           +    +   LR E++ F   L +                            GL  L+   
Sbjct: 372 RNLSNVHMLLRFEEDIFRDHLAKSGREWSAIVNQFPELSALPTDQQPGLIAGLRQLED-W 430

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                 + ++G +AFKLY THGL  D +Q ++  +G   +D   F+Q + ++R  +    
Sbjct: 431 RRSSGSDKISGSLAFKLYSTHGLQEDSLQLLVQLKGW-NVDWPQFHQLMADERM-STKIQ 488

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                 +  +   SL  K   T              +                   + V 
Sbjct: 489 SSAAVSSQFQCATSL--KVAPTV------------WQCQDVCSRNAEGHYTFKPFDATVT 534

Query: 494 AIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
           A+V Q G  +EEA +G +V V+ D++ FY EAGGQ+ DTG  +      Q+ ++++  + 
Sbjct: 535 ALVSQDGRTIEEAATGDRVAVIADKSCFYYEAGGQVSDTGRLLWPTGAGQVEEIRRVGDH 594

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I+    + E G LR   ++ + +D  NR     NH+ATHLLH A+  IL     Q  S +
Sbjct: 595 IYHLIKVNE-GNLRVNQTVQMMLDEDNRLNTMANHTATHLLHAAIKDILKVTC-QKSSYV 652

Query: 613 TPDGLRFDVTHS-KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-T 670
           TP+  RF+        T   +   E +V + I Q L V   ++    A++     L+   
Sbjct: 653 TPEHFRFEFGLFQSEFTLEMISQAESSVRNWICQRLAVDRLMLPLHQAVSLDGITLVPGE 712

Query: 671 KYNDRVRVVSVEYEDGGVHSS--ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            Y D V V+ V  E G   +     C GTHV +T ++    I+S  S   G R + A+T 
Sbjct: 713 SYPDMVSVIRVAQESGKDEAISLEPCCGTHVRNTADLEEFAILSVKSAGIGSRSVRAVTR 772

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-WEEYRKLQLIHAKRKLQLNVEDLS 787
             A+  L   D+  + L + L      +V +   + + + ++L     + +  ++ +D+ 
Sbjct: 773 ATAKQSLCRADDLKREL-NLL----EEMVNKFNAVEFTQLKELDKTLKQLRETISSDDVP 827

Query: 788 CHKIADVNFMSHIIS 802
                +++F    + 
Sbjct: 828 LIVNKELSFRLEKLE 842


>gi|47459274|ref|YP_016136.1| alanyl-tRNA synthetase [Mycoplasma mobile 163K]
 gi|81614196|sp|Q6KHK5|SYA_MYCMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|47458603|gb|AAT27925.1| alanyl-tRNA synthetase [Mycoplasma mobile 163K]
          Length = 905

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 257/955 (26%), Positives = 429/955 (44%), Gaps = 116/955 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L FF+  GH ++PS SLIP  D +L++ NSG+   K+ F+G++ P  + +
Sbjct: 1   MKSKEIRNKWLNFFESKGHLIIPSKSLIPIKDDSLLWINSGVATLKDFFSGKKIPPSKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI   ++ +      D
Sbjct: 61  TNSQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAINFGFEFIFDVLKFD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +++ T + ED E  ++  K   +   +II+ +   NFW M   GPCGP  EIF+D+G 
Sbjct: 117 REKIFFTYFSEDLETLEI-LKSLNVPDSQIIKGSRKTNFWDMG-NGPCGPNLEIFYDRGP 174

Query: 182 CIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                   L  +  E +RYIEIWN+VF QF         +L + +IDTG GLER+A +LQ
Sbjct: 175 KYSNRGIELLKNDIENDRYIEIWNIVFSQFNNDGNGNYELLKQKNIDTGAGLERLACILQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIA 287
           +   N++ DLF  +I+  E+++  KY+ +N             N ++I DHLR++   I 
Sbjct: 235 DTPTNFETDLFLPIIKEIEKLSIYKYKIDNYFLKDKIQEKINLNFKIISDHLRTAVNAIN 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKLL 346
           DG  P+N GRGY++RR++RRA      LG      +  +   +   +             
Sbjct: 295 DGAKPSNNGRGYIIRRLIRRAYRSGIFLGIKGKSFLHKMTQIVRDSL-----IYDIDVEK 349

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--------------------ILNGDV 386
           + + ++ E+E F KT+  G+ LL   +      +                      +  +
Sbjct: 350 VSKIIKKEEEMFSKTISEGINLLKEKIKSKFPKDNSIDIENKSQVAKYFKENNLTFDFSI 409

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+L+ T G P++I+++IL       +DI +  + LE     A        S   + I  
Sbjct: 410 AFELFSTFGFPVEIIKEILEDEYEIELDISNLPKYLE---EHANKSRSENSSAMQKVINS 466

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE-EA 505
               K   ++F+GY  L+                         S +  ++ + E +    
Sbjct: 467 LELVKEKVSEFVGYSTLK-----------------------TKSKILYLLNETEEIHFTN 503

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
              +   ++ D+TPFYA AGGQ  D G  I D  R+++ +V K      +++    +G +
Sbjct: 504 SENEISYLILDKTPFYATAGGQRHDKGLLIQDKNRIEVLEVFKDK---HLNNVHKVKGKI 560

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   +D   R  L  NHS THL+ +ALS   G  + Q GS    + L FD   SK
Sbjct: 561 LKSELINAEVDSNIRIGLERNHSGTHLVFNALSREFGKEIEQLGSDNNEERLTFDFPLSK 620

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVE 682
             +  E+K++E  VN+ I  ++     I   E A    A   L  +     + VR+V+  
Sbjct: 621 KPSWEEIKNVEKRVNEYINMSVDREYIITTLEGAKKLNAVMTLEEQEYMDPNEVRIVNFP 680

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
                  ++ LCGGTH+ +T +I    I+S  S      RI+AIT ++     +  +   
Sbjct: 681 K-----ITADLCGGTHIENTKKIETFKIISLDSKGKNKFRIKAITSKKIVEEYLKDEISK 735

Query: 743 KSL----------------------ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
             L                      +  L      +   +++   +Y+KL L +++ KL+
Sbjct: 736 NKLVLENLIEKNKSLFQGYKMNFSWSKNLDEQNEQITKHIDQARSDYKKL-LKNSENKLE 794

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
               D S  K  +   +  +   +    L+S++  L++K    I++L     + K  + +
Sbjct: 795 KLESDFSIMKFKNTEIIFDM--NLKMASLQSLVATLREKNPKAIVILGSEISKGKFFICV 852

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG-PNGNKADQAIAGVAS 894
                    F+A D++ +  +    G GGG   ++Q        KA+     +  
Sbjct: 853 G-----SKEFSAKDISNIIFEKYK-GKGGGNNILSQGSIDKKIEKAEDLFELLKE 901


>gi|19074068|ref|NP_584674.1| ALANYL tRNA SYNTHETHASE [Encephalitozoon cuniculi GB-M1]
 gi|19068710|emb|CAD25178.1| ALANYL tRNA SYNTHETHASE [Encephalitozoon cuniculi GB-M1]
          Length = 864

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 249/812 (30%), Positives = 397/812 (48%), Gaps = 63/812 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R +FL +F    H+++ SSS++P  D TL+FTNSGMV FK    G++K   + 
Sbjct: 2   MWTTEKLRQSFLNYFASKSHKIVNSSSVVPYEDDTLLFTNSGMVQFKKNLLGEKK-DLRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             +VQ+C+RAGGKHNDLD+VG+   HHT+FEM+GN+SFG YFKE  I  AW+ L +   L
Sbjct: 61  ACSVQRCIRAGGKHNDLDDVGKDTYHHTYFEMMGNWSFGDYFKEEGIGFAWEFLVEVLKL 120

Query: 121 DQRRLYITVYDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           D  RLY+T YDE D+E+ ++W+K   L   +II  +  DNFW M +TGPCGPC+EI +D+
Sbjct: 121 DTDRLYVTYYDELDKESGRIWRKY--LPPSRIIAASYKDNFWEMGDTGPCGPCTEIHYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                      +++    IEIWN+VF+++ +        L +  IDTG+GLER+ ++L +
Sbjct: 179 IGSRDASR-LVNKDDPNVIEIWNIVFIEYNRTTSG-LAPLERKCIDTGIGLERLLSILMD 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILPANEG 296
             +NY ID F  +I+A E     KY        V  RV+ DH R+ +  + D +  +N+G
Sbjct: 237 VKSNYLIDSFSTIIKAMESHCSFKYNDKAESTDVAFRVVADHCRTIAVCVYDKVDFSNDG 296

Query: 297 RGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            GYVLRRI+RRA+ YA   LG  E ++  L+      +G              E +  E+
Sbjct: 297 VGYVLRRILRRAVRYAHEVLGLKEGVLGELVVVAAHAIGIELE--------SVECVNKEE 348

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             F +TL +G+   + +         ++G+  F LYDT+G P+D+ + +   R    ID 
Sbjct: 349 LLFMRTLKKGIERFNRLAES---SNKISGEDLFLLYDTYGFPVDLTELMAVERN-IEIDY 404

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F    +     ++        GT   I   +  K+  T     D  +  +       +
Sbjct: 405 TNFESCRQRAIEASKKS-----KGTKLNIDIGMCSKFPPTD----DSFKYERNGVSAMFL 455

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                   +T                  +   G ++ +VFD+T FYAE GGQ+GDTG  I
Sbjct: 456 FAVAGEDVITEPC---------------KIPKGIELGIVFDKTCFYAECGGQVGDTGKII 500

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                              +   + +  +        +   DY+ RR++  NH+ THLL+
Sbjct: 501 FRDDSGDTGVFNVTDTQAILGFVVHKGALDGSASHQALQMYDYELRRRIMRNHTGTHLLN 560

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L T++     Q GS + PD LRFD    + +T+ EL+ +E  +ND I +   V   I+
Sbjct: 561 FFLRTVIK--TQQRGSLVDPDKLRFDF-EGRKLTNEELEDVERKINDFIKKGAEVKAVIL 617

Query: 655 NREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +R  A+ +     +   +Y + VR+++++    G+    +CGGTHV++  +I    IVSE
Sbjct: 618 DRRQAMDNPNIVRMQNEEYPENVRIITMQS--DGLIIQEMCGGTHVTNVSDIGKFRIVSE 675

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-----GRVEEIWEEYR 768
           + + A  RRI  +TG++A       +  L  L+    V+    +      ++E + +  R
Sbjct: 676 TGVSANTRRIVGVTGKKAHELDAEAELCLSKLSMGNVVNVDKAIPLFYRQKIEVLNQRNR 735

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVN 795
           K     +K      K +           +D N
Sbjct: 736 KKDEELSKAQYFKNKKEFLELLAKAKNASDSN 767


>gi|148887013|sp|Q4AAD3|SYA_MYCHJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|144227505|gb|AAZ44288.2| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 883

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 268/917 (29%), Positives = 439/917 (47%), Gaps = 87/917 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + + 
Sbjct: 5   SANKIRQLWIDFFRERNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD 
Sbjct: 65  NSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G  
Sbjct: 121 KNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPK 178

Query: 183 IP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ+
Sbjct: 179 FDSRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIAD 288
              NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I D
Sbjct: 239 GPTNYDTDLFLPIIAEIEKNTVFRYKIENYFLKEPRQTQINKSFRIIADHIRAITLAIND 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY++RR++RRA    + LG + P +  L+  +   +     +       I 
Sbjct: 299 GVQPSNLHRGYIIRRLIRRAYWNGKELGISHPFLYKLVEIVGKTL-----DYRFDIPTIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + + +E+E F KTL+ G  LL+  L        +     FKL++T+G P+++ ++IL  +
Sbjct: 354 KIILNEEENFAKTLEIGYNLLESQLK--INKNQIKPVTVFKLFETYGFPVELTKEILAEK 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +        +Q +E Q   ++       +G  + I    + K   + FIGY        
Sbjct: 412 NIDF----DLSQLVEFQEKHSQISRAKKTTGMQKVINSLTQIKAKISDFIGY-------- 459

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T+ + + +  +  + E V E        V+F++TPFYA AGGQ 
Sbjct: 460 ---------------HTHHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQK 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  I +   ++I DV K     F+++  V +G +     + L +D +NR  L  NHS
Sbjct: 505 HDQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHS 561

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THLL  +L    GS + Q GS    D L FD   ++  +  E+KS+E+ +N  I Q + 
Sbjct: 562 GTHLLFASLRQEFGSEIKQLGSDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIK 621

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
               + N E+A    A   L          + +   D    ++ LCGGTH+ +T  +   
Sbjct: 622 RKYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFD--KITTDLCGGTHIENTELLEKF 679

Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQ-DEKLKSLASFLKVSQGNVV--------- 757
            I+S  S  +GI RI A+T   +    L G+  E L  +++ LK     +          
Sbjct: 680 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISA-LKNKIKKIEPNFGLNLPN 738

Query: 758 --------GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKE 808
                     +++I ++ R       K +L++   +L  +KI ++   S  +   +    
Sbjct: 739 LVDLEQQFDYLKKIEDDLRIYYKKLLKSQLRIAKSELDANKIIEIGKFSFYLDFNLPLHN 798

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           LK +    +++      +L       +   LI+V+  +L       +     ++   G G
Sbjct: 799 LKQIAATWREQNPRISFILGANLVNNE--FLIIVSSAILAS---NQILEKIFEIFT-GSG 852

Query: 869 GGRPHMAQSGG-PNGNK 884
           GG   +AQ        K
Sbjct: 853 GGNYKIAQGKIQKKPEK 869


>gi|94502213|ref|ZP_01308705.1| alanyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94425654|gb|EAT10670.1| alanyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 448

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 223/436 (51%), Positives = 296/436 (67%), Gaps = 14/436 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F++NGH ++ SSSLIP NDPTLMFTN+GM  FK+ F GQE   Y   
Sbjct: 1   MKTAEIRQAFLRYFEENGHTVVASSSLIPANDPTLMFTNAGMNQFKDTFLGQETRNYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT     +
Sbjct: 61  ASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWGFLTGKDWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L   +L +TVY +D+EA+ +W +  GL  DKIIRI  N       DNFW M +TGPCGPC
Sbjct: 121 LPVEKLLVTVYADDQEAYDIWHQEMGLPEDKIIRIGDNKGEKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG P    E+G+R+IEIWN+VFMQ+ +    +   LPK SIDTGMGLE
Sbjct: 181 SEIFFDHGDHIWGGKPGTPEEDGDRFIEIWNIVFMQYNRYADGKMEPLPKPSIDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+IDLF++LI A+ + TG +    +  +  VI DH+RS  FLI+DG++
Sbjct: 241 RISAIMQGVHSNYEIDLFQNLIAAAAKATGTQD--LSNKSLLVIADHIRSCGFLISDGVM 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  LLG T+     L+ AL  EMG AYPEL Q +  +E+ L
Sbjct: 299 PSNEGRGYVLRRIIRRALRHGHLLGATDLFFFKLVAALVDEMGDAYPELKQNQAQLEKIL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTLD G+ LL+  ++ L   + + G+  FKLYDT+G P+D+  DI   + L 
Sbjct: 359 KLEEEQFAKTLDNGMKLLEEAIAELK-GDTIPGETVFKLYDTYGFPVDLTADIAREKDLK 417

Query: 412 GIDIISFNQALEEQRS 427
            +D   F   +EEQ++
Sbjct: 418 -VDEAGFESCMEEQKN 432


>gi|193216583|ref|YP_001999825.1| alanyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|193001906|gb|ACF07121.1| alanyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 885

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/904 (27%), Positives = 420/904 (46%), Gaps = 94/904 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  +L+FF    H ++PS SLIP NDP+L++ NSG+   K+ F+G++ P  + 
Sbjct: 1   MLSSKQIRQMWLDFFASKRHLVVPSKSLIPVNDPSLLWINSGVATLKDYFSGKKIPPAKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI   ++ +     L
Sbjct: 61  LTNSQKSIRT----NDIENVGVTARHHTFFEMLGNFSIGDYFKKEAINFGYEFIFDVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ R+YIT + ED+E ++ W K  G+S D +I  T + NFW + + GPCGP +EIF+D+G
Sbjct: 117 EKDRIYITYFAEDKETYETWIK-CGISPDHLIAGTRDTNFWDVGQ-GPCGPDTEIFYDRG 174

Query: 181 ECIPGGLPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                      +E    +R+IEIWN+VF Q+    +     L   +IDTG GLER+ +++
Sbjct: 175 PKYDSRGIELLKEDLENDRFIEIWNIVFSQYNNDGENNYSELISKNIDTGAGLERIVSIM 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLI 286
           Q+   N+D DLF  +I+A E++T  KY+ NN               ++I DH+R+S   I
Sbjct: 235 QDAPTNFDTDLFLPIIKAIEKLTSYKYDINNYFTKEAKQAKINTYFKIIADHMRASVNAI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYT-EPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG+ P+N GRGY++RR++RR+      LG +    +  L+  +   +     E      
Sbjct: 295 NDGVSPSNVGRGYIIRRLIRRSYRAGISLGISASSFLYKLVKVVKDSLIYEIDE-----E 349

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            + + ++ E+E F KT+  G  LL+  +        +  ++ FK++DT+G P+++  +IL
Sbjct: 350 NVAKIIKQEEELFAKTIKEGEKLLENEIKK---HGTVTTEIVFKMFDTYGFPIELTSEIL 406

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLR 464
             +    I++  F Q L+E + ++R    G       K+  SL    G  ++FIGYD L+
Sbjct: 407 KEKN-IAINLEEFKQYLKEHQEKSR----GSLESGMNKVINSLATIPGYVSEFIGYDFLK 461

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +                       S +  ++   + +  A   +   ++ D+TPFYA +
Sbjct: 462 SA-----------------------SKILYLLDDQKAIAHANDDEISYLILDKTPFYATS 498

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ  D G        +++ DV K       +H    +G +     +   +D   R   +
Sbjct: 499 GGQNHDHGYLKQGNNIIEVLDVFKDKYW---NHVHKVKGSIDASQPIECYVDEPKRLNFA 555

Query: 585 INHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            NHS+THL++HAL     +  + Q GS I+ D   FD       T  E + IE  +   I
Sbjct: 556 RNHSSTHLMYHALRETYPNEPIEQLGSNISFDHFTFDFGLDHRPTVQECRQIEKIMRSYI 615

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           A +      I   + A   GA   +          V V   +    +  +CGGTHV ++ 
Sbjct: 616 AFSAKRNYIITTIKKAQEMGAWMTIEESEYHDANKVRVVEFEN--ITKDVCGGTHVPNSS 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRAR-----SHLMGQDEKLK-------------SL 745
            I    IVS  S      R+  +T            +  + + L              ++
Sbjct: 674 VIEDFKIVSVDSKGTDTYRLRVVTSSALVNEYLTDEIKEKQKLLSILIKNNQAFLPTYNI 733

Query: 746 ASFLKVSQGNVVGRV-----EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM-SH 799
           A   K+   ++         E I +  R+      K K Q  V D+S ++   +N + ++
Sbjct: 734 AFETKIPANSIEKEALLLAYENIEDTIRQDYKKFLKAK-QNEVVDISKYESTKINGIETY 792

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           I  E D    K     L++K    +++ +    EK    ++         ++A  + +  
Sbjct: 793 IFFEDDVTLTKKASVELREKYPDALVLGLSKLAEKNYFFIVA-----SKAYDAHAIFKKI 847

Query: 860 AKVL 863
              L
Sbjct: 848 TTKL 851


>gi|294155487|ref|YP_003559871.1| alanine--tRNA ligase [Mycoplasma crocodyli MP145]
 gi|291600170|gb|ADE19666.1| alanine--tRNA ligase [Mycoplasma crocodyli MP145]
          Length = 876

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 263/932 (28%), Positives = 446/932 (47%), Gaps = 93/932 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L FF+K  H ++P+ SL+P ND +L++ NSG+   K+ F+G++ P  + +
Sbjct: 1   MDSKKIRQDWLNFFEKKNHLIVPTKSLVPVNDNSLLWINSGVATLKDYFSGKKIPPSKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+ A + L     LD
Sbjct: 61  TNSQKAIRT----NDIENVGITARHHTLFEMLGNFSIGDYFKKEAIEFAAEYLLTILKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY T + ED E  +LW    G   + +I  T + NFW +  +GPCGP +EIF+D+G+
Sbjct: 117 KNRLYFTYFHEDLETKQLWIN-CGFDPEHMIPGTRDTNFWEVG-SGPCGPNTEIFYDRGQ 174

Query: 182 CIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                   L  +  E +RY+EIWN+VF  +    +     L + +IDTG GLER+ +V+Q
Sbjct: 175 KYDSRGIELLKNDIENDRYVEIWNIVFSTYNSDGEGNYTELKQKNIDTGAGLERIVSVMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIA 287
           +   N+D DLF  +I   E+ T  +Y+ NN               ++I DH+R+ S  IA
Sbjct: 235 DAPTNFDTDLFLPIIHEIEKYTSYRYDINNYFVKNKDQVEINSCFQIIADHIRTVSNAIA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG   +N GRGY++RR++RR +  +  L  T+ + ++ L  +  +      ++++    +
Sbjct: 295 DGAKISNIGRGYIIRRLIRRCVYKSMKLKVTDSIFLYKLVKVVKQSLPFEYDVVK----V 350

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E+ +++E++ F KT+++G +LL+  +S      I +G  AFKL++T+G P+++  +IL  
Sbjct: 351 EKAIKAEEQLFAKTIEKGKILLEKNISK--GSSIFSGKTAFKLFETYGFPIELTMEILAD 408

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +    ID+  F +A   ++  A A      +G  + I      K     F+GY   +   
Sbjct: 409 Q-KVNIDMNEFEKA---KQEHAEASKTKKTAGMDKVINSLTLLKSKIDIFVGYTDTK--- 461

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                +S +  +    + ++E  S     +V D+TPFYA +GGQ
Sbjct: 462 --------------------TTSKILKLFNSNKEIKE--SNDTAFLVLDKTPFYATSGGQ 499

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  + +  +++I DV K       +H  V +G +     +   +D   R  L  NH
Sbjct: 500 RHDKGYILQNKNKIEIIDVFKDK---HGNHIHVIKGKINKNDPVECFVDETIRLGLERNH 556

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL+ AL  +LG+H+ Q GS    + L FD+      +  ++K IE+ VN  I ++ 
Sbjct: 557 SGTHLLYCALRNVLGNHIQQLGSDNNEERLTFDLPADNKPSDEKIKEIENLVNQYIKEDA 616

Query: 648 PVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                 M+ E A    A   L   +Y D+  V  V++++    ++ LCGGTH+S+T ++ 
Sbjct: 617 TRNYLQMSIEKAKEMNAILTLEEGEYMDKNNVRIVKFDN---ITADLCGGTHISNTAKLE 673

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              IV  S   AGI RI+A+T  +  +  +  +  +K + + L  +   +V        +
Sbjct: 674 SFKIVEFSKKAAGIFRIKALTSNKLVNDYLTNE--IKKVKNELNNNVEKLVKLDNNFKAK 731

Query: 767 Y----------RKLQLIHAKRKLQLNVEDLSCHKIADV-----------NFMSHIISEVD 805
                        L   + + K +L       HKI D            N     +   +
Sbjct: 732 NVESKNLNVYLDNLISYNEEIKNKLKETSKQMHKIDDFDYETVKYENSKNASFAFVESDN 791

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
              +K +   L++K    I ++   +        I +      + N+  L +   K    
Sbjct: 792 IANIKQISLTLREKNPETINIVFSKNNND---FTIAI---ASKKINSNLLLQSIFKHFN- 844

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G GGG    +     + +  ++ ++ +   L 
Sbjct: 845 GKGGGNEIFSMGKCQSTSS-EELLSYIKELLN 875


>gi|170594914|ref|XP_001902174.1| alanyl-tRNA synthetase family protein [Brugia malayi]
 gi|158590293|gb|EDP28977.1| alanyl-tRNA synthetase family protein [Brugia malayi]
          Length = 863

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 250/796 (31%), Positives = 389/796 (48%), Gaps = 48/796 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
           +   IR +FLE+F+++ H  +PSSS+IP +D ++ F N+GM  FK +F G +    +   
Sbjct: 56  SAQQIRLSFLEYFKEHNHTYVPSSSVIPEDDSSVTFVNAGMNQFKPLFLGAKYTEGKLAA 115

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
              V   QKC+R GGKHND D+VGR   HHTFFEMLGN+SFGGY K  A   AW+ LT  
Sbjct: 116 LRNVVNWQKCIRIGGKHNDFDDVGRDLTHHTFFEMLGNYSFGGYSKMEACLYAWNFLTDV 175

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             +   RLYIT +  DE        E   +W K+ G+  D+++   +N NFW MA+TGPC
Sbjct: 176 LKIPADRLYITYFGGDESMKLKEDRECRDIWIKL-GVPEDRVLGFCSNHNFWEMAQTGPC 234

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D            +      +EIWNLVFMQF +    +   LP + ID GMG
Sbjct: 235 GPCSEIHYDLIGNRKAQK-LVNSSNPTVVEIWNLVFMQFSRDISGKISSLPTLYIDCGMG 293

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFL 285
            ER+ +++Q   + YD DLF  L++   + + ++  G         +R++ DHLR++  +
Sbjct: 294 FERLVSIVQGLHSAYDTDLFLPLMRIIHEYSKVRGYGGQLGDIDTAYRIVADHLRAACIM 353

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           I+DG+ P++  RGY LRR++RRA     L LG    ++  L+P     +   Y  +   +
Sbjct: 354 ISDGVEPSSRNRGYHLRRVLRRAALNFTLTLGAERGMLASLVPDFVNHITLLYNNVAACE 413

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            +I +T+ SE++ F ++ D+G  LL+  ++   +  +L+G++A+ L  T+GLPL I Q I
Sbjct: 414 TVIAKTVMSEEQLFWRSYDKGCKLLEHNIAS--QQHVLSGEIAWMLSGTYGLPLSITQKI 471

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              +GL  +D+  F Q L   +   +A          E++  +  E    ++        
Sbjct: 472 CREKGLK-VDVDGFQQCLANFQKAQKAEEELWQKIDLEEMILNGVEPTNDSE-------- 522

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAE 523
                         +         +  V AI    G+ V     G+   VV D T F+AE
Sbjct: 523 -------KYCCERIELGKYEFPSRTGTVVAIFDVNGKNVMSLNPGELGSVVMDSTIFFAE 575

Query: 524 AGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQL D G    +       +  V+++   I     + + GIL   ++L   ID + R 
Sbjct: 576 QGGQLYDRGILQDNLNNTIFIVNSVKRRNGYIIHTGKVADNGILEKGVNLTQIIDPKQRF 635

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVN 640
            L   H+ATH+LH AL  + G  V Q GS I PD L FD     + I   +++ +   VN
Sbjct: 636 FLMCGHTATHILHFALEKVFGVSVRQMGSFIGPDKLHFDFFIPDQKIALEKIEKVMAMVN 695

Query: 641 DIIAQNLPVVTRIMNREDAIASG----AAALLGT-KYNDRVRVVSVEYED-GGVHSSALC 694
           +II  N+ V  + + +E+  +      A  +      N   R+++VE     G      C
Sbjct: 696 NIIESNINVTVKYILQEELGSLHKDFSAFDISQEASSNGSYRIITVESSALLGQDIIEPC 755

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            GTHV +T +I    I+ + S  A +RRI A+T   A   +    +    L+  L    G
Sbjct: 756 CGTHVLNTSDIGRFVIIGQKSRGANVRRIYAVTNSAALESIHNATKLKDELSDALSNVSG 815

Query: 755 NVVGRVEEIWEEYRKL 770
             +     + +  + L
Sbjct: 816 TFIDTQRLLKDFQKNL 831


>gi|304373323|ref|YP_003856532.1| alanyl tRNA synthetase [Mycoplasma hyorhinis HUB-1]
 gi|304309514|gb|ADM21994.1| alanyl tRNA synthetase [Mycoplasma hyorhinis HUB-1]
          Length = 887

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 269/937 (28%), Positives = 438/937 (46%), Gaps = 100/937 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  +L+FF+   H  + S SL+P NDP+L++ NSG+   K+ F+G++ P  + +T
Sbjct: 6   TSKQIRQLWLDFFKSKNHLEVESKSLVPENDPSLLWINSGVATLKDYFSGKKVPPSKRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ A++ LTK    D 
Sbjct: 66  NSQKSLRT----NDIENVGITSRHHTMFEMLGNFSIGDYFKKEAIEYAFEFLTKVLKFDV 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T + ED +    W K+ G+  + +I      NFW M   GPCGPC+EIF+D+G  
Sbjct: 122 NKLYFTYFLEDLDTKDYWLKL-GIKEEHLIAGNRKTNFWDMG-IGPCGPCTEIFYDRGSK 179

Query: 183 IPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L     E +R+IEIWN+VF QF    +     L   +IDTG GLER+ ++LQ+
Sbjct: 180 YDSRGIELLKEDIENDRFIEIWNIVFSQFNNDGENNYTPLISKNIDTGAGLERIVSILQD 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLIAD 288
              N+D DLF  +I   E++T  +Y+  N               ++I DH+R+    I D
Sbjct: 240 GPTNFDTDLFLPIIHQIEKMTSFRYDIENYFKKEEKQSKINSYFKIIADHIRAVVNAIND 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY++RR++RRA    + LG  E  +  L+  +   +             + 
Sbjct: 300 GVEPSNTFRGYIIRRLIRRAYRTGKKLGIKEAFLYKLVNVVKNTL-----IYDIDVDRVS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           E ++ E+  F KT++ G +LL   +     ++  +  VAFKL++T G P+++ Q+IL  +
Sbjct: 355 EVIKKEELLFEKTIENGEILLQKEIEK--NNKQFDFAVAFKLFETFGFPIELTQEILAEK 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
                  +  +Q    Q   A+        G  + +      K   +QFIGY  L+    
Sbjct: 413 N----IELDMDQFKIYQERHAQLSMGEKKLGMKKTVNSLALVKDQISQFIGYSHLK---- 464

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  +  + + +E++   Q+  V+FDQTPFYA AGGQ 
Sbjct: 465 -------------------AKAKIVFLADEEQEIEQSSEHQESYVIFDQTPFYATAGGQK 505

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  + +  +++I  V K     F++H  V  G+L     + L +D  NRR L  NHS
Sbjct: 506 HDQGWIVQNNNKIKIKQVFKDK---FLNHVHVLEGVLDKNQEVFLEVDEVNRRNLERNHS 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           +THLL  +L    G+ + Q GS    + L FD    K  T  EL  I++ VN  I +++ 
Sbjct: 563 STHLLFKSLREQYGAQIKQLGSDNNEERLTFDFPLDKKPTQKELNQIQNRVNSYIKEDVE 622

Query: 649 VVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
                 + ++A    A   L   +Y D   V  V++      ++ LCGGTH++ T  I  
Sbjct: 623 RHYLETSIKEAEKLNAVMTLEEAEYMDPKNVRLVQF---KGITTDLCGGTHIAKTSLIER 679

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHL-------------------MGQDEKLKSLASF 748
             IVS  +  +G+ RI AIT     S                        D   + ++S 
Sbjct: 680 FKIVSCQNKGSGVFRIRAITTNEKISSYCFEAFKEHWDTLMKLWDKNHQLDSTYRGVSSL 739

Query: 749 LKVSQGNV-VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM----SHIISE 803
                  + +  +E+  E+ +    I  K K  L  E++   K+  VN +      I  +
Sbjct: 740 NFSDDWELRLNEIEQYLEKAKADNKILQK-KASLAKENVEF-KLDSVNILELENRQIYLD 797

Query: 804 VDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           ++      LK +   L++K  + I  ++G  ++ +  + I  +++   R    ++     
Sbjct: 798 LNVDSVHNLKLLAVNLREKYTN-IDFVLGQHQDMRLLITIA-SKNKQSR----NIFEELN 851

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             L    GGG   + Q+   N     + ++ +   L+
Sbjct: 852 S-LNSIKGGGSDILVQA---NMVWEPEVVSKIKQILQ 884


>gi|194223559|ref|XP_001497842.2| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial (putative)
           [Equus caballus]
          Length = 962

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 258/947 (27%), Positives = 411/947 (43%), Gaps = 93/947 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 42  FLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 101

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 102 QKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYGIPEE 161

Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+++ +  D         E+  +W ++ G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 162 RLWVSYFSGDPKVGLDPDLESRDIWLRL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 220

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D                   +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 221 HYDL---------AGGVGTPELVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 271

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ + + YD DLF  L+ A  QV  +       ++ RV          L    ++    
Sbjct: 272 VLQGRRSTYDTDLFSPLLSAIHQV-SLPIRFQKPLDLRVTGAPGVCIWALSPSRLVLRRI 330

Query: 296 GRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            R          A+ ++   L      +  L+P +   +G AYPEL +    I   +  +
Sbjct: 331 LRR---------AVRFSSEVLRAPPGFLGSLVPVVVETLGDAYPELQKNSAQIASLVSED 381

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLPLDIMQDILCARGLAG 412
           +  F  +L RG  ++D  +  LG   +   +VA+   L    GLPLD+++ +L  +G+  
Sbjct: 382 EAAFLASLQRGRRIIDRTVRRLGPSHVFPAEVAWSLSLSGNLGLPLDLVELMLEEKGVQL 441

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
                   A EE + RA+        G    +        G  Q  G             
Sbjct: 442 DSAGLAQLAQEEAQRRAQQAEPIQEQGLQLDV-----HALGELQRRG----VPPTDDSPK 492

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                Q           + V  +  + G  V     GQ+  ++ D+T FYAE GGQ  D 
Sbjct: 493 YSYSLQPGGGYEFGTCEAQVLQLYTEDGRAVASVGEGQRCGLLLDRTNFYAEQGGQASDR 552

Query: 532 GC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           G     +   +     + +  G F+ H  V    L+    + L +D   R      H+A 
Sbjct: 553 GYLVRVEQQDVLFPVARAQVCGGFILHEAVAPECLKVGDQVQLHVDKAWRLGCMEKHTAI 612

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL+ AL   LG    Q GS + P+ LR DV    P+T  +L+++E  V + + Q+  V 
Sbjct: 613 HLLNWALRQALGPGTEQRGSHLNPEHLRLDVATQAPLTPEQLQAVEGIVQEAVGQDEAVY 672

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSSALCGGTHVS 700
              +             L   Y D VRV          +    +     S  LC GTH+ 
Sbjct: 673 MEEVALACTAHVPGLRSLDEIYPDPVRVVSVGVPVAHALDPASQAALQTSVELCCGTHLL 732

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASFLKVSQGNVV 757
            TG +  L IV E  +  G  R+ AITG+   +AR       +++++ A  L     +VV
Sbjct: 733 RTGAVGDLVIVGERQLTKGTTRLLAITGEQAQQAREVGQSLAQEVEAAAERLSRGSRDVV 792

Query: 758 G--RV---------------------EEIWEEYRKLQLIH--AKRKLQLNVEDLSCHKI- 791
              R+                      ++    + LQ     A RKL++        ++ 
Sbjct: 793 EAQRLSKDMGRLTDAVDTAMMPQWQRRQLQATLKVLQRRANTAIRKLEVGQAAQKTQELL 852

Query: 792 ---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
              ++   +   +S      L  V+  L +++ S  ++L+    +        V + +  
Sbjct: 853 RRHSEGPLIVDTVSTESLSVLVKVVRQLCEQVPSTSVLLLSPQPQGHVLCACQVAQSVSP 912

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 913 AFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTAD-LEAALSTARAY 957


>gi|330723800|gb|AEC46170.1| alanyl-tRNA synthetase [Mycoplasma hyorhinis MCLD]
          Length = 887

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 260/939 (27%), Positives = 433/939 (46%), Gaps = 104/939 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  +L+FF+   H  + S SL+P NDP+L++ NSG+   K+ F+G++ P  + +T
Sbjct: 6   TSKQIRQLWLDFFKSKNHLEVESKSLVPENDPSLLWINSGVATLKDYFSGKKVPPSKRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ A++ LTK    D 
Sbjct: 66  NSQKSLRT----NDIENVGITSRHHTMFEMLGNFSIGDYFKKEAIEYAFEFLTKVLKFDV 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T + ED +    W K+ G+  + +I      NFW M   GPCGPC+EIF+D+G  
Sbjct: 122 NKLYFTYFLEDLDTKDYWLKL-GIKEEHLIAGNRKTNFWDMG-IGPCGPCTEIFYDRGSK 179

Query: 183 IPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L     E +R+IEIWN+VF QF    +     L   +IDTG GLER+ ++LQ+
Sbjct: 180 YDSRGIELLKEDIENDRFIEIWNIVFSQFNNDGENNYTPLISKNIDTGAGLERIVSILQD 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLIAD 288
              N+D DLF  +I   E++T  +Y+  N               ++I DH+R+    I D
Sbjct: 240 GPTNFDTDLFLPIIHQIEKMTSFRYDIENYFKKEEKQSKINSYFKIIADHIRAVVNAIND 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY++RR++RRA    + LG  E  +  L+  +   +             + 
Sbjct: 300 GVEPSNTFRGYIIRRLIRRAYRTGKKLGIKEAFLYKLVNVVKNTL-----IYDIDVDRVS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           E ++ E+  F KT++ G +LL   +     ++  +  VAFKL++T G P+++ Q+IL  +
Sbjct: 355 EVIKKEELLFEKTIENGEILLQKEIEK--NNKQFDFAVAFKLFETFGFPIELTQEILAEK 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
                  +  +Q    Q   A+        G  + +      K   +QFIGY  L+    
Sbjct: 413 N----IELDMDQFKIYQERHAQLSMGEKELGMKKTVNSLALVKDQISQFIGYSHLK---- 464

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  +  + + +E++   Q+  V+FDQTPFYA AGGQ 
Sbjct: 465 -------------------AKAKIVFLADEEQEIEQSSEHQESYVIFDQTPFYATAGGQK 505

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  + +  +++I  V K     F++H  +  G+L     + L +D  NRR L  NHS
Sbjct: 506 HDQGWIVQNNNKIKIKQVFKDK---FLNHVHILEGVLDKNQEVFLEVDEVNRRNLERNHS 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           +THLL  +L    G+ + Q GS    + L FD    K  T  EL  I++ VN  I +++ 
Sbjct: 563 STHLLFKSLREQYGAQIKQLGSDNNEERLTFDFPLDKKPTQKELNQIQNRVNSYIKEDVE 622

Query: 649 VVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
                 + ++A    A   L   +Y D   V  V++      ++ LCGGTH++ T  I  
Sbjct: 623 RHYLETSIKEAEKLNAVMTLEEAEYMDPKNVRLVQF---KGITTDLCGGTHIAKTSLIER 679

Query: 708 LYIVSESSIRAGIRRIEAITGQR-----ARSHLMGQDEKLKSL----------------- 745
             IVS  +  +G+ RI AIT                 + L  L                 
Sbjct: 680 FKIVSCQNKGSGVFRIRAITTNEKISSYCFEAFKEHWDTLMKLWDKNHQLDSTYRGVSSL 739

Query: 746 --ASFLKVSQGNVVGRVEEIWEEYRKLQLI--HAKRKLQLNVEDLSCHKIADVNFMSHII 801
             +   ++    +   +E+   + + LQ     AK  ++  ++  +  ++ +      I 
Sbjct: 740 NFSDDWELRLNEIEQYLEKAKADNKILQKKASLAKENVEFKLDSANILELEN----RQIY 795

Query: 802 SEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
            +++      LK +   L++K  +   +L      +   ++ + +++   R    ++   
Sbjct: 796 LDLNVDSVHNLKLLAVNLREKYTNIDFVLGQHQNMR--LLITIASKNKQSR----NIFEE 849

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
               L    GGG   + Q+   N     + ++ +   L+
Sbjct: 850 LNS-LNSIKGGGSDILVQA---NMVWEPEVVSKIKQILQ 884


>gi|312084084|ref|XP_003144129.1| alanyl-tRNA synthetase [Loa loa]
 gi|307760706|gb|EFO19940.1| alanyl-tRNA synthetase [Loa loa]
          Length = 839

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/804 (30%), Positives = 385/804 (47%), Gaps = 55/804 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
           +   IR +FLE+F+++ H  +PSSS+IP +D ++ F N+GM  FK +F G +    +   
Sbjct: 23  SAQQIRLSFLEYFKEHDHTYVPSSSVIPEDDNSVTFVNAGMNQFKPLFLGAKFTEGKFAA 82

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
              V   QKC+R GGKHND D+VGR   HHTFFEMLGN+SFGGY K  A + AW+ LT  
Sbjct: 83  LRNVVNWQKCIRVGGKHNDFDDVGRDLTHHTFFEMLGNYSFGGYSKAEACRYAWNFLTDV 142

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             +   RLY+T +  DE        E   +W K+ G+  D+++    N NFW MAETGPC
Sbjct: 143 LRIPADRLYVTYFSGDENLKLKEDHECRDIWIKL-GVPEDRVLGCCFNHNFWEMAETGPC 201

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D            +      +EIWNLVFMQF +        LP + +D GMG
Sbjct: 202 GPCTEIHYDLIGNRKAQK-LVNSNNPTVVEIWNLVFMQFTRDMSGRISSLPTLYVDCGMG 260

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNN---IVNHRVIVDHLRSSSFL 285
            ER+ +++Q   + YD DLF  L++   + + + +Y G +      +R+I DHLR++  +
Sbjct: 261 FERLVSIVQGLRSAYDTDLFLPLMEIICKYSKVGRYSGRSGDIDTAYRIIADHLRAACIM 320

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           I+DG+ P +  RGY LRR++RRA     L LG     +  L+P     +   Y  +   +
Sbjct: 321 ISDGVEPGSRNRGYHLRRVLRRAALNLTLTLGAERGTLASLVPDFVNHITLLYDSVAACE 380

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            +I +T+ SE++ F K+ D+G  LL+  ++   +  IL G++A+ L   +GLPL I+Q +
Sbjct: 381 TIIVKTVMSEEQLFWKSYDKGTKLLEHNIAS--QQHILPGEIAWMLSGNYGLPLAIIQKV 438

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              +GL  +D+  F+  L   +   +A          EK+  S  +    ++        
Sbjct: 439 CNEKGLK-VDVDGFHHCLTNFQKTQKAEEEPWQKVDLEKMMLSGVKATDDSE-------- 489

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                 +      +    +  +   ++V      G+ V    SG+   VV D T F+AE 
Sbjct: 490 ------KYCCKRIKLGEYEFPSRTGAVVAIFDVNGKSVMALKSGEGGSVVMDSTVFFAEQ 543

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEG----------IFVHHAIVERGIL-RTEMSLVL 573
           GGQL D G        + ++   +                +H   V  G      ++LV 
Sbjct: 544 GGQLYDRGILRDSLNVIFMSQKCRNVIFTVNSAKRRNGYIIHTGEVANGQTLEKGLNLVQ 603

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAEL 632
            ID + R  L   H+ATH+LH AL  +  + V Q GS I PD L FD     +  T  ++
Sbjct: 604 IIDPKQRFSLMCGHTATHILHFALEKVFDASVRQMGSFIGPDKLHFDFFVPDEKFTLEKI 663

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-----GTKYNDRVRVVSVEYED-G 686
           + +   VN II  NL V  + + + +  +               ++   R++++E     
Sbjct: 664 EEVMATVNMIIESNLNVTVKYILQNELGSMHKNFSAFDISQEAAFDGSYRIITIESSQLL 723

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G      C GTHV +TG+I    I+ + S  A +RRI A+T   A   +    +    L+
Sbjct: 724 GQDIIEPCCGTHVCNTGDIGRFVIIGQKSRSANVRRIYAVTNTTALESIHNATKLNNELS 783

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKL 770
             L       +   + + E  + L
Sbjct: 784 HALSDFSETFIDTHKFMKEFQKNL 807


>gi|297516502|ref|ZP_06934888.1| alanyl-tRNA synthetase [Escherichia coli OP50]
          Length = 358

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 198/358 (55%), Positives = 255/358 (71%), Gaps = 12/358 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG      +  + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD--LSNKSLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQ 358


>gi|219558559|ref|ZP_03537635.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|289570724|ref|ZP_06450951.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|289544478|gb|EFD48126.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T17]
          Length = 797

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 268/811 (33%), Positives = 409/811 (50%), Gaps = 62/811 (7%)

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           + LD  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI++
Sbjct: 10  YGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYY 69

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLE 231
           D+G            E  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG+E
Sbjct: 70  DRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVE 128

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+A VLQ+  N Y+ DL + +I    +V    Y      + V +R+I DH R+++ LI D
Sbjct: 129 RIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGD 188

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I 
Sbjct: 189 GVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERIS 248

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F +TL  G  L + V S        +L+G  AF L+DT+G P+++  ++  
Sbjct: 249 RIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAA 308

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR  
Sbjct: 309 ETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS- 366

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQT 518
                                  + +  I   G+ V          A  GQ+VE+V D+T
Sbjct: 367 ----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDRT 404

Query: 519 PFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           P YAE+GGQ+ D G   G    +  R  +TDVQK A+ ++VH   VE G      +++  
Sbjct: 405 PLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAA 464

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   
Sbjct: 465 VDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQ 524

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S  LC
Sbjct: 525 VEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLELC 580

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV   
Sbjct: 581 GGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSE 640

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKE 808
            V  RV  + E  R  +    + ++               +I +V  ++  +S  + + +
Sbjct: 641 EVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAAD 700

Query: 809 LKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGG 865
           L+S++  ++ K+ S   ++ L+   + +     +       D    A DL +  A  +  
Sbjct: 701 LRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE- 759

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+  +AQ  G N    D A+  V S +
Sbjct: 760 GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 790


>gi|159473717|ref|XP_001694980.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276359|gb|EDP02132.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 750

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 251/755 (33%), Positives = 368/755 (48%), Gaps = 54/755 (7%)

Query: 8   RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAVT 62
           R  F EFF+  GH    SSS++P NDPTL+FTN+GM  FK +F G   P       +   
Sbjct: 6   RAAFNEFFETKGHTYWASSSVVPHNDPTLLFTNAGMNQFKPVFLGTVDPNSDMGKMKRAC 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQL-AWDLLTKEFDLD 121
             QKC+RAGGKHNDLD+VG+   HHTFFEMLGN + G Y   +A+ L A   L     L 
Sbjct: 66  NSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNCACGRYPCTQALLLIAHARLPLAL-LP 124

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY T +          D+EA ++W +   L   +++     +NFW M + GPCGPC+
Sbjct: 125 AERLYATYFRGDPAMGLPADDEAREIWLRF--LPESRVLPYGNKENFWEMGDQGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI FD+           + +    +EIWN VF+QF ++       LP   +DTGMGLER+
Sbjct: 183 EIHFDRIGGRDAAA-LVNADDPNVLEIWNNVFIQFNREPDGSLKSLPAKHVDTGMGLERI 241

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            +VLQ K +NY  DLF  +  A + VTG +   +           + +RV+ DH+R+ SF
Sbjct: 242 TSVLQGKMSNYATDLFGPIFDAIQAVTGARDYTDKIGKDDSDGVDMAYRVVADHIRTLSF 301

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            IADG  P NEGR YVLRRI+RRA+ Y R  LG  E     L+  +    G  +PEL++ 
Sbjct: 302 SIADGARPGNEGRDYVLRRILRRAVRYGREKLGAKEGFFAGLVDVVVAHFGGFFPELVKQ 361

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  I   LR E+  F +TL +G+       +     +I  G  AF L+DT G P+D+ Q 
Sbjct: 362 RDTIFGVLREEEAAFSRTLIKGIERFKKAAAGATDGKI-PGPEAFVLWDTFGFPVDLTQL 420

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   RG+  +D+  +  A+ E R +        G            + +G   + G    
Sbjct: 421 MAEERGM-AVDMAGYEAAMAEAREKMGETGRHGGFHHGVASSMVCAKLHGT--YTG--AT 475

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV--EEAVSGQKVEVVFDQTPFY 521
             S  +           P   +  VS+ V AI+  G      +   G  V +V D T FY
Sbjct: 476 VNSIPISPPPPDWQNDAPKYGSADVSAKVLAILTSGGFAAGSQEAEGGLVGLVLDTTSFY 535

Query: 522 AEAGGQLGDTG----CAIGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLVLTI 575
           AE+GGQ                              +V H     E G +    ++ +++
Sbjct: 536 AESGGQHFSPSPELLTKFSSPSTSPELLTNPTVAAGYVLHVGEVAEGGQVAVGEAVTVSV 595

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           DY+ R  +  NH+ TH+L++AL ++LG HV Q GS + PD LRFD +++ P+ +A+L ++
Sbjct: 596 DYERRGLIKPNHTFTHVLNYALKSVLGDHVDQKGSIVLPDKLRFDFSNAGPVEAAQLAAV 655

Query: 636 EDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------Y 683
           E    + +A  +PV  T +   +    +G  A+ G  Y D VRVVS+             
Sbjct: 656 EKICREAVAAAMPVFGTEVPLAQAKSINGLRAVFGEVYPDPVRVVSIGRSVADLLADPKA 715

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           +    +S   CGGTH+++T E     ++SE  I  
Sbjct: 716 DANAAYSIEFCGGTHLANTQEAEAFALLSEEGIAK 750


>gi|47168789|pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
           Alanyl-Trna Synthetase
          Length = 465

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 202/461 (43%), Positives = 288/461 (62%), Gaps = 14/461 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+K GH  + S+ L+P NDPTL+F N+G VPFKN+F G EK  Y+  T
Sbjct: 4   SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGXVPFKNVFLGLEKRPYKRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+ VG T+RHHTFFE LGNFSFG YFK+ AI+ AW+ +T+   L +
Sbjct: 64  SCQKCLRVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +DEEA+++W +  G+ +++I R+   DNFW   + GPCGP SEI+ D+GE 
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQXGDVGPCGPSSEIYVDRGEE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G         ERY+EIWNLVF Q+ +        LP  +IDTG GLER+A+VLQ K +
Sbjct: 184 YEG--------DERYLEIWNLVFXQYNRDENGVLTPLPHPNIDTGXGLERIASVLQGKNS 235

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ID+   LIQ  E+V+G KY  +    V  RVI DHLR+ +F I+DG++P+NEGRGYV
Sbjct: 236 NFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRA  +   LG   P +   +  +       YPEL  ++  ++  ++ E++RF K
Sbjct: 296 IRRILRRAXRFGYKLGIENPFLYKGVDLVVDIXKEPYPELELSREFVKGIVKGEEKRFIK 355

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G   +  V+        + L+G   F  YDT+G P+D++ +I   +GL GID+  F
Sbjct: 356 TLKAGXEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
              LEEQR RAR     + +   + ++  LKE    + F+G
Sbjct: 415 QCELEEQRERARK-HFKVEAKKVKPVYSHLKELGKTSAFVG 454


>gi|12045148|ref|NP_072959.1| alanyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|1351145|sp|P47534|SYA_MYCGE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3844871|gb|AAC71513.1| alanyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|166078929|gb|ABY79547.1| alanyl-tRNA synthetase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 900

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/948 (26%), Positives = 431/948 (45%), Gaps = 113/948 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R T+L++F K  H +L S SLIP NDP+L++ NSG+   K+ F+ ++ P  + + 
Sbjct: 4   TTDKVRQTWLDYFAKKDHLVLASKSLIPINDPSLLWINSGVATLKDYFSARKTPPSKRLV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q C+R     ND++NVG T+RH T FEMLGNFS G YFK  AI  A+DLL   + LD 
Sbjct: 64  NAQICLRV----NDIENVGFTSRHQTLFEMLGNFSIGDYFKTEAIDFAFDLLVNYYQLDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           +R YITVY++DE  +K W K   +  + II+   + NFW +   GPCGPC+EI++D+GE 
Sbjct: 120 KRFYITVYEDDETTYKRWIKHK-IDKNHIIKCDKSRNFWDLG-LGPCGPCTEIYYDRGEK 177

Query: 183 IPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                          E +RY+EIWN+VF QF          L + +IDTG G+ER+ +VL
Sbjct: 178 FDPKKIGEKLFFEDIENDRYVEIWNIVFSQFNNDGNGNYTELAQKNIDTGAGIERLVSVL 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLI 286
           Q    N+D D+F  LI+  E     KY+ N+               R+I DH ++ +F I
Sbjct: 238 QNSPTNFDTDIFLKLIKIIEAFCPFKYDPNSYFTFDPQKVKEQSYFRIIADHFKAITFTI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ++G+LP    R YV+RR++RRA+   + L      +  ++  +     + Y  L      
Sbjct: 298 SEGVLPGPNERNYVVRRLLRRALIACKKLQLNLAFIEKIIDEIIASYENYYQHLKAKNET 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +++ +  E   F KT+D GLVL +  + +      L   + F+L +T+G P++I+++++ 
Sbjct: 358 VKQVVLKEINAFNKTIDLGLVLFEKSVKN----NTLTPQLTFQLNETYGFPVEIIRELVN 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +GL  ID   F+Q + + RS ++ ++  +     EK   +L      + F         
Sbjct: 414 QKGLT-IDWTVFDQLMAKHRSISKQNNQTIN---FEKQNINLVNFKTKSTF--------- 460

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                              N +++ V  +  +  +  + ++ Q   VVFDQT  YA +GG
Sbjct: 461 ---------------FYHKNKINAKVIGLFDENYLPVKELNNQSGYVVFDQTVLYATSGG 505

Query: 527 QLGDTGCAIGDGIRLQI---TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           Q  D G  I                K       H     G  +    + L+ D   R+  
Sbjct: 506 QRYDEGSCINHSNNNDQKISFQGVFKGPNKQHFH-YFLVGSFKLNDQVTLSHDETWRKLA 564

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS  HLLH AL   +   + Q+G+  +      D   ++ +T  EL+ +E+ +  +I
Sbjct: 565 ANNHSLEHLLHAALQKEIDPLIKQSGAFKSAQKATIDFNLNRHLTRNELEKVENKIRSLI 624

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            Q +       + E +    A A    +Y+    +  + +   G +S  LCGGTHV++T 
Sbjct: 625 KQKISSKEIFTDFEGSQKLNAIAYFEEEYSQHEILRVIRF---GDYSVELCGGTHVANTA 681

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSL------------ASFLK 750
            I   +I    S+ AG  RIE I+      ++L  +++KL  L            +S  K
Sbjct: 682 SIEDCFITDFYSLGAGRWRIEIISSNETINNYLKAENQKLIQLKSELEKVLSLIDSSIFK 741

Query: 751 VSQGN---------VVGRVEEIWE-------------EYRKLQLIHAKRKLQLNVEDLSC 788
           V             +  ++ ++ +             + +      +++ L L+++    
Sbjct: 742 VELKELQQRLDKFILPEKITQLRDASDTLLALKNDINQLKTKNYKVSQQALALSIKKQLL 801

Query: 789 HKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-TEDL 846
             + +   ++    ++V+ K L   +  +  + Q+   +++    E  + ++I   T  +
Sbjct: 802 SLVDENKSYVIATFNDVEPKLLLQTLHDVFNQNQTKNFLIINQFNESNSFIVIGNKTTTI 861

Query: 847 LDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPN---GNKADQAIA 890
           +++  N+ +L            GGG   + +    +     K ++   
Sbjct: 862 IEKLRNSFNL-----------KGGGNDKLFRGSFQDNVTPQKLNELFQ 898


>gi|94971009|ref|YP_593057.1| alanyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
 gi|205829975|sp|Q1IJG7|SYA_ACIBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94553059|gb|ABF42983.1| alanyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
          Length = 1098

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 189/413 (45%), Positives = 259/413 (62%), Gaps = 25/413 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S +R  FL+FF   GH+ + SSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 14  MMTGSQVRRRFLDFFISKGHKEVHSSSLVPANDPTLLFTNAGMNQFKDVFLGVEKRDYNR 73

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFK+ AI  AW+L+T    +
Sbjct: 74  ATTSQKCVRAGGKHNDLENVGFTNRHHTFFEMLGNFSFGDYFKKDAIAYAWELVTSPDWY 133

Query: 119 DLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + Q +LY T++        D+EA++LW    G+  +++  +   DNFW+M +TGPCGPC
Sbjct: 134 GMQQDKLYATIFKGENGVPRDDEAYQLWLD-VGVPKERVFEMGMKDNFWAMGDTGPCGPC 192

Query: 173 SEIFFDQG--------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           SE+ +D G             G      E  RY+EIWNLVFMQF++        LPK SI
Sbjct: 193 SELHYDMGVASSDKKNPECAAGECKFPCECGRYVEIWNLVFMQFDRDASGTLNPLPKPSI 252

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--------NHRVIV 276
           DTG GLER+  V+Q   +NYD DLF  LI+ + ++T +  +             + RVI 
Sbjct: 253 DTGAGLERVTAVMQGVVSNYDTDLFTPLIKRAAELTDVDEKREEAKESQSKSAASLRVIA 312

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH R+++FLI+DG++PANEGRGYVLR+I+RR + + RLLG  +P +  ++ A+   M  A
Sbjct: 313 DHSRAATFLISDGVIPANEGRGYVLRKIIRRGIRHGRLLGQNKPFLHDMVYAVRDLMQDA 372

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFK 389
           YPEL +    + +T+ +E+ RF  TLD GL  LD  L+ L +     G ++++
Sbjct: 373 YPELKETADRVAKTVLAEETRFANTLDIGLKKLDEDLASLAETTRELGRLSWE 425



 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 179/683 (26%), Positives = 298/683 (43%), Gaps = 61/683 (8%)

Query: 262  MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
             +         + +  H+   + +++ G+     G G++LRR + RA    + +G    +
Sbjct: 424  WEEPKPVEFALKEVARHVFVVAQMLSPGMTFDTPGHGFLLRRGIYRAWMDLKAVGLDRVV 483

Query: 322  -MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS------ 374
             +  +  AL          + +     ++ L +E ER      +    LD + +      
Sbjct: 484  RLSEIAEALSEGETGRVQSVAKNLAHTKQILDAEQERLQSASSQLEFELDAMEAEKKLAE 543

Query: 375  ---------------------------HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
                                        L    + +GD AFKLYDT GLPLD M D    
Sbjct: 544  NPEMLAEQVREVFGPALEEKVINELRGKLQSRPVYSGDKAFKLYDTFGLPLDFMVDAARD 603

Query: 408  RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            +G    D   F+ A+E QR  ARA   G    +   I+  L E+ G   + G        
Sbjct: 604  QG-IEFDQAGFDAAMESQRETARASWKGGSKLSASPIYRELAEELGTKPYPG-----QLA 657

Query: 468  FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                             T    + V AI+  G  V +   G   E+V D TPFY+E+GGQ
Sbjct: 658  GGHPMITPQSIFVGYTSTEFKGATVLAIISNGASVAQLAPGDVAEMVLDYTPFYSESGGQ 717

Query: 528  LGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
            +GDTG          +   +  +        H +  R  +     L   ++   RR    
Sbjct: 718  IGDTGWLYDSTGNTVVAEVETVQSPVQGVRAHKVTARQNIAVGDKLNAVVNADVRRATMR 777

Query: 586  NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            NH+ THLLH AL  +LG HV Q GS + P  LRFD +H   +   EL+ IED VN  + +
Sbjct: 778  NHTGTHLLHAALREVLGKHVKQAGSLVDPAKLRFDFSHFTGVADEELQDIEDIVNKEVLK 837

Query: 646  NLPVVTRIMNREDAIASG--AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            N  V        D   +   A AL G KY DRVRV+ +     G  S+ LCGGTH  +TG
Sbjct: 838  NDRVEVIENVPIDVAVNEYKAMALFGEKYGDRVRVIKI-----GDFSTELCGGTHTLATG 892

Query: 704  EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-----VSQGNVVG 758
            EI L+ ++ E S+ +G+RR+EA+TG+ +  H     E    +++ ++          +  
Sbjct: 893  EIGLIKVLHEGSVSSGVRRLEAVTGENSVRHFRKDHELEGVVSTIVRPSEGLSPAQALKF 952

Query: 759  RVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
             ++   EE +KL+    + +++     ++    S  ++  +  ++     +D  ++++++
Sbjct: 953  ELDRREEEIKKLRKELEQSRMKSASSAVSSATESAREVKGIKVLATRADNIDRNQMRTLI 1012

Query: 814  DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
            D L+ K+ SG+I+L  + ++ K ++++ VT+DL  +  A  +    AK + GG GGGRP 
Sbjct: 1013 DNLRSKLGSGVIVLGSV-QDGKVALIVGVTKDLTSKIQAGKIIAQVAKHV-GGSGGGRPD 1070

Query: 874  MAQSGGPNGNKADQAIAGVASFL 896
            MA++GG +    D A+      +
Sbjct: 1071 MAEAGGKDPAALDGALNATYGIV 1093


>gi|90019286|gb|ABD84294.1| alanyl-tRNA synthetase-like [Yersinia sp. MH-1]
          Length = 366

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 198/366 (54%), Positives = 259/366 (70%), Gaps = 11/366 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  K F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCS 173
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI         DNFW M +TGPCGPCS
Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANDVGVPRERIIRIGDKGAPFASDNFWQMGDTGPCGPCS 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ    NY+IDLF+ LI A  +VTG      N  + RVI DH+RS +FLI+DG++P
Sbjct: 243 IAAVLQHVNTNYEIDLFRDLIAAVAEVTGATD--LNSKSLRVIADHIRSCAFLISDGVIP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q + ++E+ L+
Sbjct: 301 SNENRGYVLRRIIRRAIRHGNILGAKDTFFYKLVAPLIAVMGSAADELKQQQAMVEQVLK 360

Query: 353 SEDERF 358
           +E+E+F
Sbjct: 361 TEEEQF 366


>gi|301633563|gb|ADK87117.1| alanine--tRNA ligase [Mycoplasma pneumoniae FH]
          Length = 900

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 262/950 (27%), Positives = 435/950 (45%), Gaps = 107/950 (11%)

Query: 1   MS-NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           M      +R T+L++F   GH  LPS SLIP NDP+L++ NSG+   K+ F+ ++ P  +
Sbjct: 1   MKWTTDKVRQTWLDYFTAKGHLALPSKSLIPVNDPSLLWINSGVATLKDYFSAKKTPPSK 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            +   Q C+R     ND++NVG T+RH T FEMLGNFS G YFKE AI  A DLL   + 
Sbjct: 61  RLANAQICLRV----NDIENVGFTSRHQTLFEMLGNFSIGDYFKEEAIGFANDLLVNHYH 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD +R YITVY +DE  F  W K  G+ A +II+   + NFW +   GPCGPC+EI++D+
Sbjct: 117 LDPKRFYITVYQDDELTFNTWLKH-GIPASRIIKCDRDRNFWDLG-LGPCGPCTEIYYDR 174

Query: 180 GECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           GE                E +RY+E+WN+VF QF          L + +IDTG G+ER+ 
Sbjct: 175 GERFDPHKVGEKLFFEDIENDRYVEVWNIVFSQFNNDGNGNYSELAQKNIDTGAGIERLV 234

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-----------GNNIVNHRVIVDHLRSSS 283
            +LQ+   N+D D+F  LI   EQ    KY+                  R+I DH ++ +
Sbjct: 235 AILQDAPTNFDTDIFLKLIGIIEQHCKHKYDTNLYFKFDQKLNEAQSAFRIISDHFKAIT 294

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F IA+G+LP    R Y++RR++RRA+   + L      +  ++ A+ +  GS Y +L   
Sbjct: 295 FTIAEGVLPGPNERSYIVRRLLRRALLACKKLDLDLKFIDPMVDAIISVYGSYYQQLQGK 354

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
             ++++ +  E   F KT++ GL+L +  ++H      L   VAF+LY+T+G P++++++
Sbjct: 355 NQVVQQAIWKEVTAFDKTINLGLMLFEKSIAH----NALKPQVAFQLYETYGFPIEMIKE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           ++  +    +D  +  Q +E+ R  ++ +S  L   + EK    L     A++F+ Y+  
Sbjct: 411 LV-DKRQLQVDWKAVEQLMEQHRLISKQNSNTL---SFEKQNEHLVNFKTASEFL-YE-- 463

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                 N +++ V  +  +     + +  Q   VVFDQT  YA 
Sbjct: 464 ---------------------ANEITAKVIGLFDEQYQPVQKLHNQSGYVVFDQTVLYAT 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE-RGILRTEMSLVLTIDYQNRRQ 582
           +GGQ  D G  I      Q    Q   +G    H      G  +    ++L  D + R+ 
Sbjct: 503 SGGQRYDEGYCINHSQNDQRVSFQGVFKGPNKQHFHFFLTGSFQLGDKVILVHDGKWRQL 562

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +  NHS  HLLH AL   +   + Q+G+  +      D   S+ +T AEL+ +E  +  I
Sbjct: 563 VKNNHSLEHLLHAALQKEIDPLIKQDGAFKSAQKATIDFNFSRALTWAELERVEHRIRQI 622

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I Q++       + E +    A A    +Y++   +  + +   G  S  LCGGTHV  T
Sbjct: 623 IQQDIQREEIFTDLEGSQKLNAIAYFEEEYSNHELLRVIRF---GDFSVELCGGTHVEHT 679

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLASFLKVSQGNVVG--- 758
           G I   +I    +   G  RIE I+      ++L  Q+ KL    + L  +  N+     
Sbjct: 680 GLIENCFITDYYARGTGRWRIEIISSNETIAAYLNEQNGKLSETINSLHNTLNNIANPAL 739

Query: 759 ------------------------RVEEIWEEYR----KLQLIHAKRKLQLNVEDLSCH- 789
                                   + + +  E +    +L+    K K +   E +    
Sbjct: 740 NKQKTALTKQLNHFHLPQVITDLRKCQALLNELKITVNELKTEDFKWKQKQLAEKIKQEL 799

Query: 790 ---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
                 D  ++    + VD K L  V  A+  + ++ + +L+       + +L+   +D+
Sbjct: 800 LELAKQDKAYVLASFAAVDPKLLSQVAQAVLNQHKNKLFVLLNQFNNSPSFMLLG--QDV 857

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP---NGNKADQAIAGVA 893
                 + L +   ++     GGG  +  +       + +K    +  + 
Sbjct: 858 S---KCIQLLKAHFEL----KGGGSNNFFRGSFNESVDVSKLQAILDTLQ 900


>gi|13508158|ref|NP_110107.1| alanyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|2500958|sp|P75368|SYA_MYCPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1674107|gb|AAB96070.1| alanyl-tRNA synthetase [Mycoplasma pneumoniae M129]
          Length = 900

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 262/951 (27%), Positives = 434/951 (45%), Gaps = 109/951 (11%)

Query: 1   MS-NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           M      +R T+L++F   GH  LPS SLIP NDP+L++ NSG+   K+ F+ ++ P  +
Sbjct: 1   MKWTTDKVRQTWLDYFTAKGHLALPSKSLIPVNDPSLLWINSGVATLKDYFSAKKTPPSK 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            +   Q C+R     ND++NVG T+RH T FEMLGNFS G YFKE AI  A DLL   + 
Sbjct: 61  RLANAQICLRV----NDIENVGFTSRHQTLFEMLGNFSIGDYFKEEAIGFANDLLVNHYH 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD +R YITVY +DE  F  W K  G+ A +II+   + NFW +   GPCGPC+EI++D+
Sbjct: 117 LDPKRFYITVYQDDELTFNTWLKH-GIPASRIIKCDRDRNFWDLG-LGPCGPCTEIYYDR 174

Query: 180 GECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           GE                E +RY+E+WN+VF QF          L + +IDTG G+ER+ 
Sbjct: 175 GERFDPHKVGEKLFFEDIENDRYVEVWNIVFSQFNNDGNGNYSELAQKNIDTGAGIERLV 234

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-----------GNNIVNHRVIVDHLRSSS 283
            +LQ+   N+D D+F  LI   EQ    KY+                  R+I DH ++ +
Sbjct: 235 AILQDAPTNFDTDIFLKLIGIIEQHCKHKYDTNLYFKFDQKLNEAQSAFRIISDHFKAIT 294

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F IA+G+LP    R Y++RR++RRA+   + L      +  ++ A+ +  GS Y +L   
Sbjct: 295 FTIAEGVLPGPNERSYIVRRLLRRALLACKKLDLDLKFIDPMVDAIISVYGSYYQQLQGK 354

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
             ++++ +  E   F KT++ GL+L +  ++H      L   VAF+LY+T+G P++++++
Sbjct: 355 NQVVQQAIWKEVTAFDKTINLGLMLFEKSIAH----NALQPQVAFQLYETYGFPIEMIKE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           ++  +    +D  +  Q +E+ R  ++ +S  L   + EK    L     A++F+ Y+  
Sbjct: 411 LV-DKRQLQVDWKAVEQLMEQHRLISKQNSNTL---SFEKQNEHLVNFKTASEFL-YE-- 463

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                 N +++ V  +  +     + +  Q   VVFDQT  YA 
Sbjct: 464 ---------------------ANEITAKVIGLFDEQYQPVQKLHNQSGYVVFDQTVLYAT 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQ--KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           +GGQ  D G  I      Q    Q   K       H     G  +    ++L  D + R+
Sbjct: 503 SGGQRYDEGYCINHSQNDQRVSFQGVFKGPNKQHFH-FFLTGSFQLGDKVILVHDGKWRQ 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NHS  HLLH AL   +   + Q+G+  +      D   S+ +T AEL+ +E  +  
Sbjct: 562 LVKNNHSLEHLLHAALQNEIDPLIKQDGAFKSAQKATIDFNFSRALTWAELERVEHRIRQ 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           II Q++       + E +    A A    +Y++   +  + +   G  S  LCGGTHV  
Sbjct: 622 IIQQDIQREEIFTDLEGSQKLNAIAYFEEEYSNHELLRVIRF---GDFSVELCGGTHVEH 678

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLASFLKVSQGNVVG-- 758
           TG I   +I    +   G  RIE I+      ++L  Q+ KL    + L  +  N+    
Sbjct: 679 TGLIENCFITDYYARGTGRWRIEIISSNETIAAYLNEQNGKLSETINSLHNTLNNIANPA 738

Query: 759 -------------------------RVEEIWEEYR----KLQLIHAKRKLQLNVEDLSCH 789
                                    + + +  E +    +L+    K K +   E +   
Sbjct: 739 LNKQKTALTKQLNHFHLPQVITDLRKCQALLNELKITVNELKTEDFKWKQKQLAEKIKQE 798

Query: 790 ----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                  D  ++    + VD K L  V  A+  + ++ + +L+       + +L+   +D
Sbjct: 799 LLELAKQDKAYVLASFAAVDPKLLSQVAQAVLNQHKNKLFVLLNQFNNSPSFMLLG--QD 856

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP---NGNKADQAIAGVA 893
           +      + L +   ++     GGG  +  +       + +K    +  + 
Sbjct: 857 VS---KCIQLLKAHFEL----KGGGSNNFFRGSFNESVDVSKLQAILDTLQ 900


>gi|169836863|ref|ZP_02870051.1| Alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 568

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 227/602 (37%), Positives = 340/602 (56%), Gaps = 48/602 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F++FF+   H+   S+SLIP +D +L+ T +GMVPFK  F G+++  +  +
Sbjct: 1   MTGNEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFPRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK   LD
Sbjct: 60  TTYQKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLD 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178
             RLY++VY  D+EA+++W K  G+  D+I+R+   DN+W+    G CGPCSEI++D   
Sbjct: 116 PERLYVSVYKTDDEAYEIWNKEIGVPEDRIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQN 175

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G+          +EG+R++EIWNLVF ++ +        LP+ +IDTG GLER+A+V+Q
Sbjct: 176 MGKNNEEINCKPGDEGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIASVVQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +K NN++ D+F  +I+  E+V  +K E   I   +VI DH+R+S FLIADG+LP+NEGRG
Sbjct: 236 KKDNNFETDIFMPIIKGIEKVLDIKKEEFEIT-VKVIADHIRASVFLIADGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYAR------LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           Y+LR+I+RRA            +   +  +  L+P +   M  AYPEL++ +  IE+ LR
Sbjct: 295 YILRKIIRRAFGAGIVAKQKLEITKDDLFLYKLVPYVVENMKEAYPELVEKQEYIEKVLR 354

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E ERF  TL  G+ +L   +  + K+ I  L+ D +FKLYDT GLP ++ + IL  +G 
Sbjct: 355 LEQERFALTLKNGIEMLTEEIEKMDKEGIKKLSADASFKLYDTFGLPFELTELILENQGY 414

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              +   FNQ LEEQ  R++   + +     +       E++G T+F GY+       + 
Sbjct: 415 EVSEEE-FNQKLEEQVKRSKNSRVTVSDMIKDDFIDKFFEEHGKTEFTGYEKFEDEGKIL 473

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
              K                                     EV+FD+TPFYAE+GGQ+ D
Sbjct: 474 HIAKSEGISG------------------------------YEVIFDRTPFYAESGGQVAD 503

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG         ++ +V KK +       I++         + + ID   R+ +  NH+AT
Sbjct: 504 TGIITSGEFEGKVVNVVKKHDVFIHQVEILKGIAPAVGAEVKMKIDADRRKDIQRNHTAT 563

Query: 591 HL 592
           H+
Sbjct: 564 HI 565


>gi|194246643|ref|YP_002004282.1| alanyl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|193807000|emb|CAP18435.1| Alanyl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 861

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 267/926 (28%), Positives = 447/926 (48%), Gaps = 109/926 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I+  +L FF   GH    S SLIP NDPTL++ N+G+ P K  F G    V   +
Sbjct: 1   MTSLEIKNMWLNFFINKGHYQENSFSLIPENDPTLLWVNAGITPLKKYFNGSLPVVNSRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL--TKEFD 119
             +QKC+R     ND++NVG+T+ HHTFFEMLGNFS G YFK+ AI  A++LL   + F 
Sbjct: 61  VNIQKCLRT----NDIENVGKTSTHHTFFEMLGNFSIGNYFKKEAIDFAYELLMSKQWFG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  ++YIT Y +D E   LW K   +  + +I +    NFW++ + GPCGPC+EIFFD+
Sbjct: 117 FDSNKIYITYYYKDIETLNLWLKK-DIHPEHLISL--ESNFWNIGQ-GPCGPCTEIFFDR 172

Query: 180 GECI-PGGLPGSSEEGER--YIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERM 233
           G    P G     ++     ++EIWN+VF Q+    +  K     LP  +IDTG GLER+
Sbjct: 173 GSKYHPKGKELIKKDIPNNRFVEIWNIVFSQYNFNPENKKNIYQELPSKNIDTGAGLERL 232

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ+  NN++ D+F  +IQ    ++ +KY   N    +VI DH+R+  F I DG++ A
Sbjct: 233 ACILQDVENNFETDIFFPIIQKISYLSSIKY--QNQEAFKVISDHIRTLVFAIGDGVIFA 290

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N+GRGYVL++I+RRA+   ++L + +P +  L+P +  +    YP+L + + ++E+ +  
Sbjct: 291 NDGRGYVLKKILRRAIQKGKILNFKKPFLYKLIPIVVKQNQFFYPKLKEYQSILEKIIYK 350

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+++F   L+      +  + +L K+  L+G+  FKLYDT+G+P +I+ +    +G   I
Sbjct: 351 EEKKFFDMLEN----CEEKILNLIKNNFLSGEQYFKLYDTYGIPKEIILNYCEQKGFI-I 405

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + LE  ++ ++ +     S   +   F        + FIGY++L          
Sbjct: 406 DNDGFIKKLESHKNLSKLNQHFKLSIQKKNDKF--LNFKDKSNFIGYNILE--------- 454

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  I ++G             ++ ++TPFY   GGQ+ D G 
Sbjct: 455 --------------TKTKVIKIFEEG-------------IILEKTPFYPNMGGQINDKGF 487

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                ++  I     +           +  +   +  ++  ID+  R+Q+S++H+ATHLL
Sbjct: 488 INNIPVKKIIRLHHGQLLHQV------QSDLFYEDQEVIAKIDFNARKQISLHHTATHLL 541

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             A+  ILG H+ Q GS I  + LR+D  H + I   ++   E  VN  I +   V+ + 
Sbjct: 542 QDAIILILGKHIEQKGSFIGDNLLRWDFNHYEKIKPQDILKFEIQVNKWIQKKTNVIIKE 601

Query: 654 MNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +   DA            KY + VR+V +       +S  LC GTH  +T ++  + I+S
Sbjct: 602 ILFSDAKKIPNIKYFKDKKYPEIVRIVQM-----DDYSITLCAGTHAKNTKDLKKIIILS 656

Query: 713 ESSIRAGIRRIEAITGQRARS--------HLMGQDEKLKSLASF----LK-VSQGNVVGR 759
            + I +GI RIEA  G  A +        +L  +   +K          K +   N++  
Sbjct: 657 CNLISSGIYRIEASVGLNAINILNQKINFYLDEKKNIIKKAQRMSISNFKLLLPENIIIT 716

Query: 760 ------------VEEIWEE---YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
                       ++ +      ++K  L + K+ +  N++     KI        I  ++
Sbjct: 717 ESFQDILNYKLYIQNLQRNFNFFKKELLENQKKYVLSNIKKFIPSKI-TTKMFLKINDKM 775

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           + + LK +++ L  K +   I+L+   ++ K   L    +      +A  + +  +++  
Sbjct: 776 EMEVLKYLLEYLFVKFK-MEILLICYLQDDKMFFLC---KSAT--LHAGQIIKTISQIAE 829

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIA 890
           G GGG     AQ    + NK    + 
Sbjct: 830 GFGGGNNK-FAQGSTKHPNKLKSVLK 854


>gi|213420683|ref|ZP_03353749.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 340

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 191/335 (57%), Positives = 243/335 (72%), Gaps = 12/335 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 335


>gi|168704593|ref|ZP_02736870.1| alanyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 436

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 182/433 (42%), Positives = 257/433 (59%), Gaps = 20/433 (4%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           M + S IR  F++FF +K+GH  + SS ++P NDPTL+F N+GM  FK  F G EKP   
Sbjct: 1   MLSSSEIRQQFVDFFCKKHGHTNIASSPVVPLNDPTLLFANAGMNQFKPYFLGTEKPPVV 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKC+RAGGKHNDLD+VGR   HHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + 
Sbjct: 61  RVANTQKCIRAGGKHNDLDDVGRDTYHHTFFEMLGNWSFGDYFKKDAIAWAWELLTEVWK 120

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           LD  RL++TV++         D+EA   W K  G+  ++I      DNFW M  TGPCGP
Sbjct: 121 LDPTRLHVTVFEGDPANGIPRDDEAAGFW-KAVGVPEERIHLGNKKDNFWEMGNTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           C+EI  D+     GG P  +   ++ IEIWNLVF+QF +   Q    LP   +DTGMG E
Sbjct: 180 CTEIHIDRTPDKSGG-PLVNGGTDKVIEIWNLVFIQFNRNEDQSLTPLPAQHVDTGMGFE 238

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQ--VTGMKY----EGNNIVNHRVIVDHLRSSSFL 285
           R+ +V+Q K++NYD D+F  L +A ++  +    Y           +RVI DH+R+ +F 
Sbjct: 239 RICSVVQGKSSNYDTDVFTPLFEAIQKVTLCDRPYGGDLNDLKDTAYRVIADHIRTLTFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           + DG    N GR YVL+RI+RRA  Y    LG  EP +  L+  +    G+A+PEL +  
Sbjct: 299 LTDGATIGNVGRDYVLKRILRRAERYGYQVLGTNEPFLYRLVDTVVEHFGAAFPELKKNP 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             +++ +R E+  F +TL RG+ L + + + +       ++G  AFKL+DT+G+ +DI  
Sbjct: 359 HKVKDQIRDEEAAFLRTLRRGITLFNRIAAQMKDEGRTQVSGKEAFKLHDTYGVIIDITL 418

Query: 403 DILCARGLAGIDI 415
            +   +GL     
Sbjct: 419 QMAQEQGLTVDVP 431


>gi|126653904|ref|ZP_01725751.1| alanyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126589629|gb|EAZ83768.1| alanyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 742

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 266/776 (34%), Positives = 415/776 (53%), Gaps = 62/776 (7%)

Query: 148 ADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL----PGSSEEGERYIEIWNL 203
            +++IR+    NFW + E GP GP SEIF+D+G                E ERY+EIWNL
Sbjct: 1   EERLIRL--EGNFWDIGE-GPSGPNSEIFYDRGVEYGSDENDPEMYPGGENERYLEIWNL 57

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           VF QF          LPK +IDTGMGLER+ +V+Q    N+D DLF  +I+  E+    K
Sbjct: 58  VFSQFNHNPDGTYTPLPKQNIDTGMGLERIVSVVQNVPTNFDTDLFMPIIEKIEEFANRK 117

Query: 264 YEGNNIVN--------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           Y+  + V+               +V+ DH+R+ +F I DG LP+NEGRGYVLRR++RRA+
Sbjct: 118 YKRPSEVDLNEIFGSEEDINTPFKVVADHIRTVAFAIGDGALPSNEGRGYVLRRLLRRAV 177

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
            YA+ +G  +P M  L+P +   M   YPE+ +    I+  +++E+ RF +TLD GL + 
Sbjct: 178 RYAKQIGIEKPFMFELVPTVGKIMEGFYPEVTEKSEFIQRVIKNEEIRFHETLDGGLAIF 237

Query: 370 DGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           + V         + + G  AF+LYDT+G P+++ ++     G+  +D   F  A+EEQR 
Sbjct: 238 NEVAESQKAAGHDFIPGADAFRLYDTYGFPIELTEEYAEEVGMK-VDHEGFETAMEEQRE 296

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
           RARA    + S   +     L     A++F+G+D L                        
Sbjct: 297 RARAARQDVDSMQVQNEV--LANLTVASEFVGFDTL-----------------------V 331

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
            ++ + A++  G++ + A  GQ+  V+  QTPFYAE GGQ+ D+G    D     + DVQ
Sbjct: 332 ANTEIAAMIVNGQVEKVASEGQEALVILAQTPFYAEMGGQIADSGIISNDSFTAVVKDVQ 391

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           K   G  +H  +VE G +  E ++   ++  +R  +  NH+ATH++  AL  +LG HV+Q
Sbjct: 392 KAPNGQPLHTVVVESGEMHVEDAVQAIVNRDDRNLIIKNHTATHIMQRALKDVLGDHVNQ 451

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
            GS + PD LRFD +H   +T  EL+ IE  VN+ +  ++ VV   M  + A   GA AL
Sbjct: 452 AGSYVGPDRLRFDFSHFGQVTKEELQQIERIVNEKVWDDIEVVIEEMAIDKAKEMGAMAL 511

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G KY D VRVVS+     G +S  LCGG HV  + EI    IVSE  I AG RRIEA+T
Sbjct: 512 FGEKYGDVVRVVSI-----GDYSIELCGGIHVKRSSEIGFFKIVSEGGIGAGTRRIEAVT 566

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL- 786
           G+ A   +  ++  L   A+ LK +  ++V +V+ +  +Y++LQ  +     ++      
Sbjct: 567 GKVAYEVVKEEEALLNDAAALLKANPKDIVTKVQALQGDYKELQRDNEALSQKIANAQAG 626

Query: 787 ----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
               +   I DV  +S  +   D+ +L+ +MD L+ K+   +I+L  +  + K  +   V
Sbjct: 627 AIVDAAQTIGDVTVLSTKVEAKDNNQLRQMMDDLKVKMPKAVIVLGAVDGD-KVMLCAGV 685

Query: 843 TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +++L+   ++A ++ ++ A+   GG GGGRP MA +G    +K D+A+  V  ++K
Sbjct: 686 SKELVGGNYHAGNIVKMVAEAC-GGKGGGRPDMAMAGAKEASKLDEALLSVYDYVK 740


>gi|255520943|ref|ZP_05388180.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
          Length = 523

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 221/551 (40%), Positives = 314/551 (56%), Gaps = 45/551 (8%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L+ +L  +    ++I+ G   FKLYDT G P+++ ++     
Sbjct: 354 IRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   ++EQR RAR+    + S   +     L      + F+GY+       
Sbjct: 414 GLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGI 539
            D G    +  
Sbjct: 508 ADKGTIESETG 518


>gi|308189958|ref|YP_003922889.1| alanine--tRNA ligase [Mycoplasma fermentans JER]
 gi|307624700|gb|ADN69005.1| alanine--tRNA ligase [Mycoplasma fermentans JER]
          Length = 851

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 260/882 (29%), Positives = 425/882 (48%), Gaps = 89/882 (10%)

Query: 22  LLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVG 81
            + S SLIP NDP+L++ NSG+   K+ F+G++KP    +T  QK +R     ND++NVG
Sbjct: 2   RVESKSLIPVNDPSLLWINSGVATLKDYFSGKKKPPRNRLTNSQKAIRT----NDIENVG 57

Query: 82  RTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWK 141
            T+RHHTFFEMLGNFS G YFK+ AI   ++ LT E  +D ++LY+T + ED +  K W 
Sbjct: 58  VTSRHHTFFEMLGNFSIGDYFKKEAIAFGYEFLTNELQIDPKKLYMTYFAEDLDTKKYWM 117

Query: 142 KISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG---GLPGSSEEGERYI 198
           +  G+    +I  T + NFW +  +GPCGP +EIF+D+G         L     E +RYI
Sbjct: 118 EQ-GVEESHLIPGTRDTNFWDVG-SGPCGPDTEIFYDRGPKYNKRGLELLKKDIENDRYI 175

Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           EIWN+VF QF    +     L + +IDTG GLER+A+++Q+   NYD DLF ++I+  E+
Sbjct: 176 EIWNIVFSQFNNDGENNYTELKQKNIDTGAGLERIASIMQDAPTNYDSDLFINIIKEIEK 235

Query: 259 VTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
              +KY+ +N             N +VI DH+R+    IADG   +N GRGY++RR++RR
Sbjct: 236 YATVKYDIDNYFKKDKKQTEINTNFKVIADHIRTVVNAIADGAKVSNVGRGYIIRRLIRR 295

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           ++     LG     +  L+  +   +   Y +           ++ E+  F +T+++G +
Sbjct: 296 SIYKGMQLGVKGLFLHKLVDVVQDSLPYEYDKKPVVVA-----IKEEELAFHQTIEKGKL 350

Query: 368 LLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           LL+  + +  K +I +G+ AF L +T+G P+++  +IL  + +  +D+ +F +     + 
Sbjct: 351 LLEKFMDN--KTKIFSGEDAFNLLETYGFPIELTVEILAKKNIK-VDLKAFEE----AKE 403

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGAT-QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
           R    S G      +K+  SL    G   +FIGY  L                       
Sbjct: 404 RHANLSRGEKVNGMDKVINSLALIKGKIGEFIGYTDLES--------------------- 442

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
              S +  ++   E V+      +  ++ D+TPFYA +GGQ  D G  +    +++I DV
Sbjct: 443 --KSKILKLLNNEEEVKSLNG--EGYLILDKTPFYATSGGQNHDHGFILQGKNKIKILDV 498

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
            K     F +H     G +  + ++   +D + R  ++  HSATHLL  AL  +LG H+ 
Sbjct: 499 FKDK---FGNHIHKIEGKINNKDTVECYVDKEVRIGMARGHSATHLLFRALVKVLGPHID 555

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q GS IT + L FD    +  T  ++K IED ++  I QN+     + N + A   GA  
Sbjct: 556 QLGSDITEERLIFDFPADEKPTDEQIKKIEDIMHGWIKQNVEREYIVTNIKKAKEMGAIM 615

Query: 667 LLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +   +Y D   +  V   D    +  LCGGTH+  TG +    I       AG+ RI A
Sbjct: 616 TIDESEYMDPNNIRIV---DFKGITKDLCGGTHLDRTGILEDFKITKVEKKTAGVFRIRA 672

Query: 726 ITGQR-ARSHLMGQDEKLKS-LASFLK-------------VSQGNVV---GRVEEIWEEY 767
           +   +  + +L   ++ LK  L + +K                 +V      +++  ++ 
Sbjct: 673 VASHKYVKQYLTELNQSLKEQLDALVKKAQSFDSKYQIKFTPNKDVEIECANIKKTIDKV 732

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +      K K  +  +  S     +  +  ++  + DS ++K     L++K    II+L
Sbjct: 733 HEDIKELIKNKSNITFDFDSVQLTKNKKYPYYLNIDFDSSQVKVAAATLREKFPEAIIVL 792

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
              S  +    +           +A  L +  A    G GGG
Sbjct: 793 GAKSNNQILLCVAA------KVLDANKLFQQIASKTNGRGGG 828


>gi|187469665|gb|AAI66719.1| Aars2 protein [Rattus norvegicus]
          Length = 746

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/734 (30%), Positives = 353/734 (48%), Gaps = 62/734 (8%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 34  AAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 93

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFK+ A  +AW+LLT+ 
Sbjct: 94  RRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKKEACSMAWELLTQV 153

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +  D         E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 154 YGIPEDRLWVSYFSGDSKTGLDPDLETRDIWLSL-GVPASRVLSFGLQENFWEMGDTGPC 212

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D                 + +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 213 GPCTEIHYDL---------AGGMGPPQLVELWNLVFMQHYREADGSLHLLPQQHVDTGMG 263

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q   +                  +RV+ DH+R
Sbjct: 264 LERLVAVLQGKHSTYDTDLFSPLLDAIHQSCRVPPYSGRVGAADEGRIDTAYRVVADHIR 323

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+   L      + +L+P +   +G+AYPE
Sbjct: 324 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGNLVPVVVATLGAAYPE 383

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLP 397
           L +  + I   +  ++  F  +L RG  ++D  +  LG  ++   +VA+   L    G+P
Sbjct: 384 LQKNSVKIANLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 443

Query: 398 LDIMQDILCARGLAGID--IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
           LD++Q +L  +G+      +    Q   + R++    +   G          L  +   T
Sbjct: 444 LDLVQLMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEAAQEEGLCLDVHALEELHRQGIPT 503

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVV 514
                                 +           + V  +  + G  V     GQ+  ++
Sbjct: 504 -----------TDDSPKYNYSLRPNGDYEFGLCEAQVLQLYSETGTAVASVGEGQRCGLL 552

Query: 515 FDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE GGQ  D G  I      +     + +  G F+ H  +    L+    + L
Sbjct: 553 LDRTNFYAEQGGQASDRGYLIRTGQQDVLFPVARAQVCGGFILHEAMAPECLQVGDRVQL 612

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   R    + H+ATHLL+ AL   LG    Q GS + P+ LRFDV    P+T+ +L+
Sbjct: 613 YVDKAWRMGCMVKHTATHLLNWALRQTLGPTTEQRGSHLNPERLRFDVATQTPLTTEQLR 672

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEY 683
           ++E  V + + Q+ PV    +             L   Y D V          + ++   
Sbjct: 673 TVESYVQEAVGQDKPVYMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAQALAPAS 732

Query: 684 EDGGVHSSALCGGT 697
           +     S  LC GT
Sbjct: 733 QAALQTSVELCCGT 746


>gi|315929558|gb|EFV08748.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 305]
          Length = 715

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 269/769 (34%), Positives = 411/769 (53%), Gaps = 60/769 (7%)

Query: 133 DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSS 191
           D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E          
Sbjct: 2   DDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFNSSEDYMG 59

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
            +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N+D  LF  
Sbjct: 60  GDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNFDSSLFMP 119

Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
           +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRRI+RRA+ +
Sbjct: 120 IINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRILRRALRH 179

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
             LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++ G+ + + 
Sbjct: 180 GYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIENGIEIFNE 239

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
            L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + EQ++RA+A
Sbjct: 240 ELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMNEQKARAKA 296

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
              G G  T    + +L EK+G   F+GY+                            S 
Sbjct: 297 SWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE-----------------------CESK 333

Query: 492 VKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
           + A++ +  + V          V+ + TPFYA +GGQ  D          +   +V    
Sbjct: 334 ILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSAD-------SGFIAKREVLDTQ 384

Query: 551 EGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           +   ++ + ++ G   +    +   ID + R Q++ +HSATHLLHHAL  ILGSHVSQ G
Sbjct: 385 KFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSHVSQAG 444

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           S +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  SGA AL  
Sbjct: 445 SLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSGAIALFN 504

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRIEA+  +
Sbjct: 505 EKYQGNVRVLTLGE------SKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAVVSK 558

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A   +  Q E+L  +   LK +  +++  ++++  E   L+          +  +L   
Sbjct: 559 AALEFVKNQLEELSKVKDELKNN--DILSGIKKLKNEILSLKNELKN----SSKTELDSK 612

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
            I  V      I   D+ ++K+++D  + K    +I+L+ + K++K ++   V +D+   
Sbjct: 613 NIQGVEICVKRI---DNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV-KDVP-- 665

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 666 LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 713


>gi|157119081|ref|XP_001659327.1| alanyl-tRNA synthetase [Aedes aegypti]
 gi|108875478|gb|EAT39703.1| alanyl-tRNA synthetase [Aedes aegypti]
          Length = 1012

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 236/958 (24%), Positives = 405/958 (42%), Gaps = 126/958 (13%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           +   IR  F+++F Q+N H L+ SSS++P +DPT+ F N+GM  FKN+F G  +      
Sbjct: 34  SSKQIRQQFVDYFVQENEHRLVRSSSVVPFSDPTIAFVNAGMNQFKNVFLGTAEAPCPRA 93

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R GGKHND+  VG    HHTFFEMLG++SFG YFK  A Q+AW LLT+ + +D
Sbjct: 94  VNSQKCIRVGGKHNDVSVVGSDGYHHTFFEMLGSWSFGDYFKREACQMAWRLLTEVYGID 153

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            RRLY++ +  DE        E   +W  + G+  ++II     DNFW M  +GPCGPC+
Sbjct: 154 PRRLYVSYFGGDEAMGLPADLECRDVWAGL-GIPPERIIPFGARDNFWEMGNSGPCGPCT 212

Query: 174 EIFFDQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQ-NKQERFILPKMSIDTGMG 229
           EI  D  +      G     +       E+WN+VF+Q+ +         LP+  +DTG+G
Sbjct: 213 EIHIDHSDRFLDTEGRKHLVNAGVPDLTEVWNIVFIQYNRNLEDGRINDLPQRHVDTGLG 272

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVDHL 279
           LER+   LQ K +NYD DLF  +    ++VT                     +R++ DH 
Sbjct: 273 LERLVAHLQNKNSNYDTDLFVPIFDRIQKVTKKDGYQGIFDSTDPRCPLDTAYRIVADHT 332

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  ++DG+ P+   + + LRRI+RR++  +  +  +  L+  L+P +   +G  YPE
Sbjct: 333 RMITACLSDGMFPS---QNHKLRRILRRSLSLSERVFSSPSLLQELIPVVVGILGDTYPE 389

Query: 340 LIQAKLLIEETLRSEDERFGK------------------------TLDRGLVLLDGVLSH 375
           + +     ++ +  E++ + +                        T   GL      +  
Sbjct: 390 MHKKLQQTQQIILHEEQSYQQLRSNLSSDSRALLKEYSYFDEAEVTDHPGLPYALKEIKR 449

Query: 376 LGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           L   +   +L+G++  K+YDT+GL  D++  I        +DI  +N   +  +  A+  
Sbjct: 450 LKAKQGLRLLDGEMIHKMYDTYGLDEDLLVKIG-EFEHLELDIKGYNSYSKLIKEGAKLE 508

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                         SL    G +Q +       ++   +      +   +     + + +
Sbjct: 509 LAARLQE-------SLNTSQGLSQGLNQKQQCPTRNEYKYNYTYNKDKRLYEIPKLKTKI 561

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKK 549
            +IV                V+ +++ FY E+GGQ  D G    A       ++  V + 
Sbjct: 562 TSIVTADGEENAL-----CHVITEKSNFYFESGGQQSDRGSLALATDPTTPFRVKSVGEH 616

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              +           L     ++LT+D   R    ++H+ATHLL+ A  ++L   + Q  
Sbjct: 617 QGFVIHSVDRRAAEKLSVGDEVILTVDPIIRSSNIVHHTATHLLNAAARSVLAVPMCQRS 676

Query: 610 SCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           S +   GL+ ++      I   E+ ++E  +   I QN PV  R+ N  +        + 
Sbjct: 677 SYVGDKGLKLELAVCGAKIGPDEVDAMEQQIRQCIRQNEPVRVRVCNASEVDLDKVTMIP 736

Query: 669 GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           G  Y ++ +R+V +    G   S+  C GTH  STG++    I + S  ++G     AI 
Sbjct: 737 GEVYPEKGLRLVEI----GQSTSTEFCCGTHAQSTGQLQDFCITNVSQSKSGCYTFFAIA 792

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           GQ A        +    +   LK           ++  +   L+    + K  L V   +
Sbjct: 793 GQAAIKAHQLGAQIQNDV-GQLKHDMDQ------QLSRDMTSLEARMQRLKNVLLVGSEN 845

Query: 788 CHK---------IADVNFMSHIISEVDSKELKSVMD----ALQKKIQ-----------SG 823
                       +  +N +   + +   + L+ ++D     LQ++               
Sbjct: 846 NINLPHAIRQRCLDVINELYRRLKDHTRESLRELIDLEMKNLQQEYPLASNPFIVHFLES 905

Query: 824 IIML-------VGISKEKKASVLIVVTEDLLD------------RFNAVDLARLSAKV 862
            I+L              +  ++I +T+D +             RF+A    R    V
Sbjct: 906 SIILEEVQLSKATRYFPDRPILVISITDDQVKARATVPATCVNERFDAQKWLRTVGTV 963


>gi|195127375|ref|XP_002008144.1| GI13332 [Drosophila mojavensis]
 gi|193919753|gb|EDW18620.1| GI13332 [Drosophila mojavensis]
          Length = 1009

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 226/966 (23%), Positives = 396/966 (40%), Gaps = 118/966 (12%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR TF+++F   + H+ + SS ++P  DPT+ F N+GM  FK+IF G     Y+ V
Sbjct: 13  TAREIRKTFIDYFTVNHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKSIFLGTAAAPYKRV 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK  A  +A +LL   +++D
Sbjct: 73  VNSQKCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNID 132

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+
Sbjct: 133 PSRLYVTYFAGDKLLGIPADMECFEIWRSL-GFPAARILPFGCKDNFWEMGTTGPCGPCT 191

Query: 174 EIFFDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           EI  D         I       +       E+WNLVF+Q+ +        LP   +DTGM
Sbjct: 192 EIHIDHRPGDGPASIEQRAKLVNAGRPDLTELWNLVFIQYNRNADGSITQLPAQHVDTGM 251

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDH 278
           G ER+A +LQ K++NYD DLF  L  A   ++       +            ++R++ DH
Sbjct: 252 GFERLAALLQNKSSNYDTDLFTPLFDAIHSLSKAPVYAGSFPDDQNAALLDTSYRILADH 311

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYP
Sbjct: 312 ARMVTACLADGMLPD---QNQKLRRVLRKALSISEQVFAHDKLLSQLVPIVVETLGEAYP 368

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--------------------- 377
           E+   +  + E +  E E +    +        VL+                        
Sbjct: 369 EMSTKQQAVIELIAHEQEVYKNLRESSSKAFAEVLTEFPKLDDIDLMECPGFVPAYREFQ 428

Query: 378 ------KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
                  +  + G+  +KL DT+GL  +     L        D+  +   L   + + + 
Sbjct: 429 VQRSNFPNNTIPGEFLYKLTDTYGLTEESF-LKLAELENMNCDLDRYRAELALAKLKTKE 487

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                G             +   T+      L  +    +      ++        + S 
Sbjct: 488 PQNNRGDFDLALQQRIADAQAQLTK-----RLASTDNSYKYIYSYDEENETYAIPMLKSC 542

Query: 492 VKAIVQQGEIVEEAVSG---QKVEVVFDQTPFYAEAGGQLGDTG--------CAIGDGIR 540
           V  I+Q    V           + +V   + FY E+GGQ  D G                
Sbjct: 543 VLGILQDDSEVSRVRPEASLNTLSIVTAASNFYFESGGQQSDLGMLLVHNKQKPEEPHQL 602

Query: 541 LQITDVQKKAEGIFVHHAIVERGILR--TEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +         + V                 + L +D ++R+  + +H+ATHLL+ A+ 
Sbjct: 603 EVVGVKHLNECVVHVCRLTTPSDDFDLAVGDEVQLEVDAKHRQLNTCHHTATHLLNAAIR 662

Query: 599 TILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
           ++      Q  S ++ +  + ++    K IT A+++ IED +N  I    PV    ++  
Sbjct: 663 SLFNKVTYQVSSAVSSEQCKLELGLLGKRITKADVQHIEDLINRAICSATPVQVHQLSAA 722

Query: 658 DAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           D +      ++    Y ++ +R+++V+  +  + S  LC GTHV++T E+    IV+   
Sbjct: 723 DVLQQNDITMVPGEVYPEQGLRLINVQCPELNLSSKELCCGTHVTNTKEMSCFCIVNLKQ 782

Query: 716 IRAGIRRIEAITGQRARSHL-----------------------MGQDEKLKSL-ASFLKV 751
                    A+ GQ A + L                          + +L+++  + L  
Sbjct: 783 TNRARYAFTAVAGQAAENVLKTAALLRHRVDVLENQFQTDKLTNATETELQTIRQNMLHS 842

Query: 752 SQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
                     + + R+ ++    ++      K  +++ + ++   K  D +         
Sbjct: 843 DIKLPYAFKMDTLDRINQMLRRLKETSRTTLKEFVEVEMRNVLLEKPLDTHPYILHFISS 902

Query: 805 DSKELKSVMDAL----QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLS 859
            +     +++ +      K+ +   +LV    +        V ++ + + FNA    +  
Sbjct: 903 SA-----LVEEIPLQRATKLCTDRPILVVSMCDNIVKARCCVPQNCISKQFNASLWLQSF 957

Query: 860 AKVLGG 865
           A+   G
Sbjct: 958 AETFNG 963


>gi|293363884|ref|ZP_06610620.1| alanine--tRNA ligase [Mycoplasma alligatoris A21JP2]
 gi|292552374|gb|EFF41148.1| alanine--tRNA ligase [Mycoplasma alligatoris A21JP2]
          Length = 875

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 258/930 (27%), Positives = 433/930 (46%), Gaps = 90/930 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  +L F+++  H ++P+ SL+P ND +L++ NSG+   K+ F+G++ P    +
Sbjct: 1   MNSKKIRQDWLNFWEQKQHLIVPTKSLVPVNDNSLLWINSGVATLKDYFSGKKNPPSLRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  A + L     LD
Sbjct: 61  TNSQKAIRT----NDIENVGITARHHTFFEMLGNFSIGDYFKKEAIYWASEYLNNILKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+ T + ED E  KLW    G     +I      NFW +  +GPCGP +EIF+D+G 
Sbjct: 117 KEKLFFTYFHEDLETKKLWMD-CGYDESHMIPGDKKTNFWEVG-SGPCGPNTEIFYDRGA 174

Query: 182 CIPGGLPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                     +E    +RYIEIWN+VF  +    +     L + +IDTG GLER+ +++Q
Sbjct: 175 KYDSRGIELLKEDLENDRYIEIWNIVFSTYNSDGEGNYTELKQKNIDTGAGLERIVSIMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIA 287
           +   NYD DLF  +IQ  E+    KY+ NN             + ++I DH+R+ +  IA
Sbjct: 235 DAPTNYDSDLFIPIIQEIEKYVEFKYDTNNYFKKDLEQEKINTSFKIIADHIRTVANAIA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG   +N GRGY+LRR++RR++     L     L ++ L  +         +  +    +
Sbjct: 295 DGAKVSNVGRGYILRRLIRRSIYKGMQLKVKSSLFLYKLVKIVKSTLPYEYDTKK----V 350

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E+ ++ E+E F KT+++G  LL+  L      +I +G+  FKL +T+G PL++ ++IL  
Sbjct: 351 EKAIKEEEELFAKTIEKGRKLLEKNLED--NTKIFSGETTFKLLETYGFPLELTKEILEE 408

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           + ++     +  +  + +++ A A      SG  + I      K     F+GY+ +    
Sbjct: 409 KNISI----NMEEFEQAKQNHANASRGKKISGMDKVINSLSLLKSKIDNFVGYEQVE--- 461

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                               ++S +  +      +E+  +     ++ + TPFYA +GGQ
Sbjct: 462 --------------------ITSKILKLFNTENEIEQ--NDGISYLILESTPFYATSGGQ 499

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  I D  +L I DV K     F +H    +G +  ++ +   +D   R  L  NH
Sbjct: 500 KHDRGHLIQDKNKLIIIDVFKDK---FGNHIHKVKGKINKKLPIECFVDKTIRLGLERNH 556

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL+ AL  ILG  + Q GS    + L FD+      T+ E+  IE  V   I Q+ 
Sbjct: 557 SGTHLLYCALRNILGKQIVQLGSDNNEERLTFDLPADTKPTNEEILKIEKLVKTYIQQDA 616

Query: 648 PVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                 M+ + A    A   L   +Y D+  V  V++++    ++ LCGGTH+S+T ++ 
Sbjct: 617 KREYLQMSIDKAKQINAILTLEEGEYMDQNNVRIVKFDN---ITADLCGGTHLSNTAKLE 673

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK---------LKSLASFLK------V 751
              IV      AG+ RI+AI+  +  +  + ++ +         +  +  F K       
Sbjct: 674 NFKIVEVEKKSAGVFRIKAISSNKLVNDYLTKEIEKFELELNVVITKIKDFDKNYSVLLN 733

Query: 752 SQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
           ++ ++   +E I     +    L+    K + Q + +  S   I   N++    S  +  
Sbjct: 734 NKNDLSNYLESIKIAIDKANNDLKDFSKKSQKQADFDFESVEFIKIKNYLLSFTSAQNPG 793

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
           ++K +   L++K     I L   ++ K  ++ +          ++    +        G 
Sbjct: 794 QVKLISTTLREKNNQS-INLAYFAEGKNLTISLA-----SKVIDSNQYLQKIFTKFN-GR 846

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGG   M+   G      +     +   L 
Sbjct: 847 GGGNAIMSM--GKCLANPNDIFEYIKELLN 874


>gi|229545937|ref|ZP_04434662.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|229309005|gb|EEN74992.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1322]
          Length = 741

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 280/775 (36%), Positives = 420/775 (54%), Gaps = 55/775 (7%)

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-----PGGLPGSSEEG 194
           W+   GLS D I  I   DNFW +   GP GP +EIF+D+GE                E 
Sbjct: 1   WRDEVGLSEDHI--IDVEDNFWDIG-AGPSGPDTEIFYDRGEEFLDIPEDDPENYPGGEN 57

Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254
           ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +++Q+   N++ DLF  +I 
Sbjct: 58  ERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVSIIQDAPTNFETDLFMPIIH 117

Query: 255 ASEQV-TGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
           A E + T +KY       V+ +VI DH+R+ SF I DG LP+NEGRGYVLRR++RRA+ +
Sbjct: 118 AVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALPSNEGRGYVLRRLLRRAVMH 177

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            + LG  E  +  L+P +   M S YPE++Q K  IE+ +R+E+ERF +T++ GL +L+ 
Sbjct: 178 GKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVRTEEERFHETINEGLSMLNE 237

Query: 372 VLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
           V+  +     + L+G + FKLYDT G P+++ +++    GL  +D   F   +E QR RA
Sbjct: 238 VIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGLK-VDHAGFETEMEAQRERA 296

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           R+      S   +     L +    ++F+GY  L                          
Sbjct: 297 RSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD----------------------- 331

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-K 548
           S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+ D G        +    V  K
Sbjct: 332 SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQIADRGYVKNTAGDVVANVVDVK 390

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           KA      H +     L       L +D + R ++  NH+ATHLLH AL  +LG H +Q 
Sbjct: 391 KAPNGQFLHKVEVLAPLAEGQIYQLQVDERMRTRILKNHTATHLLHRALKDVLGEHANQA 450

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           GS + P  LRFD TH   +TS EL  +E  VN+ I + +PVVT   + + A   GA AL 
Sbjct: 451 GSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAIPVVTIETDIDTAKNMGAMALF 510

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G KY   VRVV++     G +S  LCGGTHV++T +I +  IVSES I AG+RRIEA+T 
Sbjct: 511 GEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGIFKIVSESGIGAGVRRIEAVTS 565

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL- 786
           + A   L  ++ +LK +A+ +K  Q   VV + E++ ++ R LQ  + +   +L  +   
Sbjct: 566 KEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQQLRDLQKENEQLAGKLANQQAG 625

Query: 787 ----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
                   +  V +++  ++  D  +L+ + D  ++K  S +++L   ++++K S+L  +
Sbjct: 626 DIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQKELSDVLVLA-TAQDEKVSLLAAM 684

Query: 843 TEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           T+D+      A DL +  A  +GGGG GGRP MAQ+GG N      A+A V ++L
Sbjct: 685 TKDMNGKGLKAGDLIKAIAPKVGGGG-GGRPDMAQAGGKNPAGIADALAEVENWL 738


>gi|217033203|ref|ZP_03438652.1| hypothetical protein HPB128_150g3 [Helicobacter pylori B128]
 gi|216945067|gb|EEC23779.1| hypothetical protein HPB128_150g3 [Helicobacter pylori B128]
          Length = 496

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 210/518 (40%), Positives = 303/518 (58%), Gaps = 33/518 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLMHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ARVDMQGFENCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPF 520
                 + V        + + EA   Q+V V+ ++  F
Sbjct: 456 ----CPAKVLGFFDSDFKEITEANPNQEVWVLLEKPLF 489


>gi|158286470|ref|XP_308773.4| AGAP006997-PA [Anopheles gambiae str. PEST]
 gi|157020483|gb|EAA45453.4| AGAP006997-PA [Anopheles gambiae str. PEST]
          Length = 1011

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 222/875 (25%), Positives = 381/875 (43%), Gaps = 93/875 (10%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           +   IR  F+++F  K+ H L+ SSSLIP ND T+ F N+GM  FK++F G  +   Q  
Sbjct: 36  SSLEIRRQFIDYFTVKHNHRLIRSSSLIPFNDSTIAFVNAGMNQFKSVFLGTAERPCQRA 95

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHNDL  VG  + HHTFFEMLGN+SFG YFK  A ++AWDLL   + +D
Sbjct: 96  VNSQKCVRVGGKHNDLSVVGTDSYHHTFFEMLGNWSFGDYFKREACEMAWDLLRNVYRID 155

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y+T +          DEE  ++W+ + G+  ++++     DNFW M  +GPCGPC+
Sbjct: 156 TDRVYVTYFGGDAKLNLPADEECRQIWRSL-GIPPERVLPFGARDNFWEMGNSGPCGPCT 214

Query: 174 EIFFDQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQ-NKQERFILPKMSIDTGMG 229
           EI  D               +       EIWN+VF+Q+ +  +      LP+  +DTGMG
Sbjct: 215 EIHLDLSGEYRNTKARQHLVNAGVPDLTEIWNIVFIQYNRSLDDGTIRNLPQRHVDTGMG 274

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHL 279
           LER+   LQ K +NYD DLF+ + +  ++ T  +    +             +R++ DH 
Sbjct: 275 LERLVAHLQHKQSNYDTDLFEPIFRRIQKATKKEPYRGSFLSTDSHYELDTAYRIMADHS 334

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  +ADG+ P+   + + LRRI+R+++  A        L+   +P +   + + YPE
Sbjct: 335 RMITACLADGMFPS---QNHKLRRIIRKSLALATRTFNHPQLLRETVPCVVEILSTVYPE 391

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVL---------------------LDGVLSHLGK 378
           + +    + + +  E   +     +                         L   +  L +
Sbjct: 392 MGRNLPTVLQIIEHEQHLYSALRTKRSAETSALLQQFPQLEESEALEHPGLADAIKELAQ 451

Query: 379 DEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
            +   LNG    KLYDT+GL  +++  +      +        +           H L  
Sbjct: 452 TKPTHLNGAHIHKLYDTYGLDEELLVKLGEMMHFSLDFRD--YERYVRVLKDGHKHELAT 509

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
              T    + +L+E   +        L+ ++  +                   + V  ++
Sbjct: 510 KLQTRLSAYENLRESLDS------ATLKPTRAERRYNYAFNADKGTYEVAPCRARVSLLL 563

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI------RLQITDVQKKA 550
           +         +  +  +V DQ+ FY E+GGQ  DTG    +          ++T V    
Sbjct: 564 ED-------EARDQWHIVTDQSNFYCESGGQQSDTGRLTVEAGGSAGGQTFEVTGVTDHN 616

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             +           L    ++VL +D   R QL+++H+ATHLL+  +  ++   + Q  S
Sbjct: 617 GFVMHSIKRQPNVALSVGDTVVLQVDANRRTQLTLHHTATHLLNAVVRKVVALPMCQRSS 676

Query: 611 CITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
            ++    R ++  S   +T  ++ +IE  V  +I +N P+   + N  D   +    + G
Sbjct: 677 SVSERHFRLELAISGEKLTLEQIAAIETEVRTLINRNEPIGVTVCNAADLDLATVTIVPG 736

Query: 670 TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
             Y DR +RVVS+     G  S  LC GTH + TGE+  + I + +  + G     A+ G
Sbjct: 737 ETYPDRGLRVVSI-----GDVSRELCCGTHATRTGELQDVAITNVTQSKNGCFTFHAVAG 791

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             AR       +    ++   + ++ N      E  E+   ++    + K  L     + 
Sbjct: 792 PAARKVHYLGAQIQNDVSQLQQDAEQN------EKQEDITIIETRMQRLKNVLLTGTDNN 845

Query: 789 HK---------IADVNFMSHIISEVDSKELKSVMD 814
                      +  +N +   + +   + L+ ++D
Sbjct: 846 IHLPYCVRQRCLDVINALYQKLKDRSRESLRELID 880


>gi|73668887|ref|YP_304902.1| alanyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|121697109|sp|Q46CS0|SYA_METBF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|72396049|gb|AAZ70322.1| alanyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 923

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/965 (23%), Positives = 376/965 (38%), Gaps = 174/965 (18%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           +S +R  +L FF++ GH  +    ++      L  T + +  F+   T GQ  P    +T
Sbjct: 60  ISQMREYYLSFFEEKGHTRINRYPVVARWRDDLYLTIASIADFQPFVTSGQVPPPANPLT 119

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKE 117
             Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+KE A++L  +LLT  
Sbjct: 120 ISQPCIRL----NDLDSVGRSGRHLTTFEMMAHHAFNKRDHEIYWKEHAMELCDELLTS- 174

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             LD   L ++                             +  W+    G  GPC E+  
Sbjct: 175 LKLDP--LAVSY---------------------------KEEPWAGG--GNAGPCVEVLV 203

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMGL 230
                               +E+  LVFM  +   K +          +    +DTG GL
Sbjct: 204 ------------------HGLELATLVFMDLKADKKGDVLIKGETYSKMDNYIVDTGYGL 245

Query: 231 ERMATVLQEKTNNYD------IDLFKHLIQASEQVTGMKYEGNNIVNHRV---------- 274
           ER     +     YD      ++    L     ++   +Y      N R+          
Sbjct: 246 ERFVWASKGSPTIYDALFPGIVNELMGLAGLEHELDNSEYANILAQNARLAGFMDVSEQS 305

Query: 275 --------------------------------IVDHLRSSSFLIADGILPANEGRGYVLR 302
                                           I DH R  +F++ DGI+P+N   GY+ R
Sbjct: 306 NLLELRKKVASSIGMTVDKLSAIMEPVEKVYAITDHTRCLTFMLGDGIIPSNVKAGYLAR 365

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
            ++RR +     L    PL   ++      M   YPE  +   +I++ L SE+E+F  T+
Sbjct: 366 LVIRRTLRMMDDLDIRIPLS-EIMDMHIKNM-PEYPEFRENFPVIQDILVSEEEKFRNTM 423

Query: 363 DRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           ++G  ++    SH  K  E +      +LYD+HG+P ++ +++    G+      +F   
Sbjct: 424 EKGRRIIQKSASHFKKTGEKIPLSQLTELYDSHGIPPEMAKEVASEIGVGVEFPDNFYSI 483

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + E  ++A      +        +    +    T+   YD     +F             
Sbjct: 484 IGELHNKAEEKEEEV------VPFADRLKHLPKTKRSFYDEPTRLEF------------- 524

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   ++V  I                 +V D T FYAE GGQ  D G         
Sbjct: 525 -------EAVVLDIFDNN-------------IVLDNTFFYAEGGGQPADMGTIATAYAVY 564

Query: 542 QITDVQKKAEGIFVHHAIVE-RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           ++ DVQ     I       +    +R    +   +D + R  L+ +H+ATH+++ A   +
Sbjct: 565 KVVDVQVYDGVIVHTIENPDGNLDIRKGDIVNGKVDEKRRMTLARHHTATHIVNDAARKV 624

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+H+ Q G+    D  R D++H K I+  ELK IE   N ++ +N  VVT  M+R +A 
Sbjct: 625 LGTHIWQAGAQKFEDHSRLDLSHYKHISPDELKQIELLANRMVMENKRVVTEWMSRTEAE 684

Query: 661 ASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                 L        +++RVV V            C GTH  STG +  + I+    I+ 
Sbjct: 685 QEYGFGLYQGGVPPGEKIRVVKVGD------DVEACAGTHCVSTGVVGPIKILRTERIQD 738

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ R+E   G  A   +   D  L   A  L V    +   VE  + E++ L+  + K K
Sbjct: 739 GVERVEFAAGVAAVRAMQKIDSLLSDSAKTLSVPPEQLPASVERFFGEWKDLKKENEKLK 798

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            ++    +        ++A +  ++  I E DS EL+     L K     ++ L+    E
Sbjct: 799 EEIARARVYRLLGGASEVAGLKVIAEFIPEADSLELQKTATELLKH--EDVVTLLASDAE 856

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
               V     + L    NA  L R  +K++ GG GGG+P +A  GG + +K   A+A   
Sbjct: 857 GVKLVASAGQKALSCGINAGSLVREMSKLVSGG-GGGKPALAMGGGTDPSKIQDALARGL 915

Query: 894 SFLKK 898
             +K+
Sbjct: 916 ELVKE 920


>gi|194750281|ref|XP_001957556.1| GF23971 [Drosophila ananassae]
 gi|190624838|gb|EDV40362.1| GF23971 [Drosophila ananassae]
          Length = 1011

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/971 (24%), Positives = 402/971 (41%), Gaps = 124/971 (12%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V
Sbjct: 13  TAREIRKTFLDHFTVSHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRV 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   +++D
Sbjct: 73  VNSQKCVRVGGKHNDLSVVGSDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNID 132

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+
Sbjct: 133 PGRLYVTYFAGDKVLGIPADSECFEIWRSL-GFPASRILPFGCKDNFWEMGATGPCGPCT 191

Query: 174 EIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGMG 
Sbjct: 192 EIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMGF 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLR 280
           ER+  VLQ K +NYD DLF  +    +QV      G +            N+R++ DH R
Sbjct: 252 ERLTAVLQNKHSNYDTDLFTPIFDGIQQVAKAPVYGGSFPDGANEALLDTNYRILADHAR 311

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
             +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYPE+
Sbjct: 312 MVTACLADGMLPD---QNQKLRRVLRKALNISEHVFAKENLLTQLIPIVVETLGEAYPEM 368

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG----------------------- 377
              +  + + ++ E E +    +        VL+                          
Sbjct: 369 SAKQQAVVDLIQHEQEVYKNLRESSSKAFAEVLTEFPNLDDIDLMECPGFVPAYREFQVQ 428

Query: 378 ----KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                +  + GD  +KL DT+GL  +     L        D+  +   +   + +A++  
Sbjct: 429 RSKFNNNTIPGDFLYKLTDTYGLTEESF-LKLAELENMNCDLERYRAEVSLAKIKAKSIQ 487

Query: 434 LGLGSGTTEKIWFSLKEKYGA--TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
              G+   + +      +  A  T+      L  +    +      ++        + + 
Sbjct: 488 REEGASLYDLVTEQRIAEAQAKMTK-----RLTATDNSHKYSYTFDKESSSYEIPPLRTR 542

Query: 492 VKAIVQQGEIVEEAVSG-------QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
           V  ++     V               + +V   + FY E+GGQ  D G  +         
Sbjct: 543 VMGLLLNDAEVSRTQGSRLQDPTTDTISLVTAASNFYYESGGQQSDGGKILVQNTHQPDQ 602

Query: 545 DVQKKAEGI-----FVHHAIVERGILR-----TEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   +      V H       +          + L +D   R+  + +H+ATHLL+
Sbjct: 603 PHLLDVISVKNLNDCVVHVCRLSSPVDAFELAIGDDVELVVDPTQRQLNTCHHTATHLLN 662

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
            A+ T+      Q  S +T D  + +V    K I  ++++ IED +N +I    PV    
Sbjct: 663 AAIRTLFDKVTYQVSSSVTSDQCKLEVGLLGKRIKKSDVQLIEDLINRVICAATPVKVER 722

Query: 654 MNREDAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           +   + +      ++    Y ++ +R+V V+  +  ++S  LC GTH ++T E+    IV
Sbjct: 723 LCAAEVLQQNDITMVPGEVYPEQGLRLVHVQSPELHLNSKELCCGTHATNTSELSCFCIV 782

Query: 712 SESSIRAGIRRIEAITGQRARSHL-----------------------MGQDEKLKSLA-S 747
           +            A+ GQ A + L                          + +L+++  +
Sbjct: 783 NLKQTNRARFSFTAVAGQAAENVLKTAALLRHRVDLLEKQFQTDKITNATEAELQTIRHN 842

Query: 748 FLKVSQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSH 799
            L            + + R+ E+ +  ++      K  +++ + +L   K  + + F+ H
Sbjct: 843 MLHTDIKLPYAFKMDTLERISEMLKRIKESSRTTLKEFVEVEMRNLLQEKPHETHPFILH 902

Query: 800 IISEVDSKELKSVMDAL----QKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVD 854
            I+        ++++ +      K+     +LV    +        V  +   D+FNA  
Sbjct: 903 YITSS------ALVEEIPLQRATKLCQDRPILVISMCDSVVKARCCVPPNCATDKFNASA 956

Query: 855 LARLSAKVLGG 865
             +  A   GG
Sbjct: 957 WLQSFADTFGG 967


>gi|26554308|ref|NP_758242.1| alanyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|81747470|sp|Q8EUR6|SYA_MYCPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|26454317|dbj|BAC44646.1| alanyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 930

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 245/949 (25%), Positives = 423/949 (44%), Gaps = 78/949 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF+   H  + S SLIP ND +L++ NSG+   K  F+G+E P  + +T
Sbjct: 6   TTNEIRKLWLDFFKSKNHTEVESKSLIPKNDDSLLWINSGVATLKTFFSGKENPPSKRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q+C+R     ND++NVG T+RHHTFFEMLGNFS G YF++ AI+   +L+ K F LD 
Sbjct: 66  NSQRCLRT----NDIENVGLTSRHHTFFEMLGNFSIGDYFRKEAIEFGAELVFKVFKLDP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           +++YITVY+ED+E+F LW K +G     I++   + NFW +  +GPCGPC+EI++D+GE 
Sbjct: 122 KKIYITVYEEDQESFDLWVK-NGAIKSHILKCDKSRNFWEIG-SGPCGPCTEIYYDRGEK 179

Query: 183 IPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                          E +RYIEIWN+VF +F    K     L + +IDTG GLER+A +L
Sbjct: 180 YDFQKLGEKLFFEDIENDRYIEIWNIVFSEFNNDGKNNYTKLARQNIDTGAGLERLACIL 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEG-------------NNIVNHRVIVDHLRSSSF 284
           Q+   NYD D F ++    E+ +  KY+                     VI+DH ++  F
Sbjct: 240 QDVPTNYDTDAFVNVRSVIEKYSNKKYDNNLYFESKKDSEKVFINKCFSVIIDHFKAVIF 299

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I+DG LP+N+ RGY+LR+++RR+  Y   L  +      ++  + +   + YP L +  
Sbjct: 300 AISDGALPSNKDRGYILRKLLRRSFLYLNYLKVSFENSKEIINTIISNNETYYPYLKENL 359

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ-- 402
             +  T++ E + + ++++         L+ L   ++L+    F L  T+G P++I+Q  
Sbjct: 360 NNVINTIKLEYDLYCESINNSFKK----LNELLNKKLLDASDLFNLVTTYGFPIEIVQSL 415

Query: 403 ----DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
                         +     N      +  +    L +     EK++   +    A   +
Sbjct: 416 QELLTQSKDAKNLKLAEDIINSINPSDKKIS-ISKLKIEFDEFEKLFDEHRLIANANASV 474

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQ 517
               +        +   L      ++ +  +S V  I  +  + VEE  +     V+ D+
Sbjct: 475 --KGMENQNEELLNLPTLDSSFDYEIESVKNSKVLKIFDENWKPVEEIKNKD-CWVILDK 531

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T F+A  GGQ  DTG      +   I   Q       V       G  +    +   I+ 
Sbjct: 532 TCFFATTGGQEHDTGKINKFDVVDVIKSPQGYHLHKVVK------GTFKIGEKVDGQINS 585

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            +R  +   HS+ HL+H AL  ++   + Q G+  + + +  D + ++ +T  E+  +E 
Sbjct: 586 FDRNIIRKQHSSEHLMHSALKRVVSPTIKQEGAFKSIEKITLDFSFNRKLTYKEILGVEK 645

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            V  IIA   P    +   ++A   GA       Y        +        S  +CGGT
Sbjct: 646 EVKRIIATKNPTQVLMKTLDEAKEMGAIGYFEQVYKKI--SGKLRVLYLCPESIEICGGT 703

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITG------------QRARSHLMGQDEKLKSL 745
           HV +TG+I    +   +S  +G  RIEA++             ++A        +K K L
Sbjct: 704 HVYNTGDIEDFMVTGLTSKGSGSWRIEAVSSNYLVDKFKNNVIKKAIDDFNNYFKKYKEL 763

Query: 746 A----SFLKVSQGNVVG----RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
                   K  + ++       ++EI E  +        RK + N+   S         +
Sbjct: 764 NIKDDEVEKYKKTDINSIHYLELKEINEILKNKINTLVIRKEKENLSKESNEIKNKFTEV 823

Query: 798 SH-----IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RF 850
                  ++ ++D K L + +     + +S + +++    +     ++   E        
Sbjct: 824 KESTKLFLLKDIDRKLLFNSLVLAINEAKSTVFLVIN-EVDGVIQYVLCSNESFAKNNNL 882

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN--KADQAIAGVASFLK 897
           +    A+     L GG GGGR ++ Q      +  + ++ +  + + LK
Sbjct: 883 DFNLYAKDLNAKL-GGKGGGRSYLVQGTILKIDEKELNKILDTINAKLK 930


>gi|309800688|ref|ZP_07694829.1| alanyl-tRNA synthetase [Streptococcus infantis SK1302]
 gi|308115695|gb|EFO53230.1| alanyl-tRNA synthetase [Streptococcus infantis SK1302]
          Length = 730

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 263/771 (34%), Positives = 398/771 (51%), Gaps = 59/771 (7%)

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP-----GSSEEGERYI 198
            G+    +I I   DNFW +   GP GP +EIFFD+GE                E +RYI
Sbjct: 1   MGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGEAFDPENIGLRLLAEDIENDRYI 57

Query: 199 EIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           EIWN+V  QF         +   LP  +IDTG GLER+  V+Q    N++ DLF  +I+ 
Sbjct: 58  EIWNIVLSQFNADPAVPRSQYKELPHKNIDTGAGLERLVAVIQGAKTNFETDLFMPIIRE 117

Query: 256 SEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
            E+++G  Y+ + + ++ +VI DH+RS SF I DG LP NEGRGYVLRR++RRA  + + 
Sbjct: 118 VEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRASMHGQK 177

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           LG  EP +  L+P +   M S YPE+++ +  IE+ ++SE+E F +TL  G     G+++
Sbjct: 178 LGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIVKSEEESFARTLHSGQHFAQGIVA 237

Query: 375 HLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            L +    ++ G   FKLYDT+G P+++ ++I    G+  +D   F  A++EQ+ RARA 
Sbjct: 238 DLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAGMT-VDREGFEAAMKEQQERARAS 296

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           ++  GS   +    +L+     + F                            + +SS +
Sbjct: 297 AVKGGSMGMQN--ETLQNITVESVF------------------------NYNASQLSSKL 330

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAE 551
            AIV     VE    G    ++F +TPFYAE GGQ+ D G  +     +  T    +KA 
Sbjct: 331 VAIVADNAEVENVSEG-TASLIFAETPFYAEMGGQVADHGQILDAQGNVVATVTDVQKAP 389

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
                H +     L       L ID   R ++  NH+ATHLLH AL  ILG H +Q GS 
Sbjct: 390 NGQALHTVEVLAPLALNQEYTLAIDSNRRHRVMKNHTATHLLHAALHNILGHHATQAGSL 449

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
              + LRFD TH + +T  EL++IE  VN+ I + + V T   + + A   GA AL G K
Sbjct: 450 NEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAIAVKTVETDIDTAKEMGAMALFGEK 509

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y   VRVV++     G +S  LCGGTHV +T EI L  IV E  I +G RRI A+TG+ A
Sbjct: 510 YGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEA 564

Query: 732 RSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL---- 786
                 Q++ LK +A+ LK  Q   V  +VE + E+ R+LQ  +A+ K +          
Sbjct: 565 FEAYREQEDALKEVAATLKAPQLKEVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVF 624

Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
            +  +     +++  +S  D+  L++  D  ++K  S +++LV    +K   ++   T+D
Sbjct: 625 KNVQEANGHRYIASQVSVSDAGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKD 684

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +A ++ +  A ++  G GGG+P MA +GG N  K  + +  VA  L
Sbjct: 685 ----VHAGNVIKELAPIV-DGRGGGKPDMAMAGGSNQAKIQELLDAVAGKL 730


>gi|91087359|ref|XP_975627.1| PREDICTED: similar to mitochondrial alanyl-tRNA synthetase
           CG4633-PA [Tribolium castaneum]
          Length = 1044

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 237/858 (27%), Positives = 393/858 (45%), Gaps = 47/858 (5%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +IR  FL++F  KN H  + SS ++P  DPT+ F N+GM  FK +F G  +P Y+ V
Sbjct: 75  TGKAIRQKFLDYFINKNNHNFIKSSPVVPFCDPTVAFVNAGMNQFKGVFLGTHQPQYKNV 134

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R GGKHNDL+ VG    HHTFFEMLGN+SFG YFK+ A +LAW LLT+E+ + 
Sbjct: 135 ANSQKCIRVGGKHNDLNVVGGDGYHHTFFEMLGNWSFGDYFKQEACELAWKLLTEEYKIH 194

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +         ED E  ++W K  G+S D+I+  T+ DNFW M  TGPCGPC+
Sbjct: 195 PSRLYVTYFKGDPVLGIDEDLETKEIW-KTIGVSEDRILPFTSKDNFWEMGPTGPCGPCT 253

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI  D            ++      E+WNLVF+Q+ +++ +   +LP+  +DTGMG ER+
Sbjct: 254 EIHIDHTTS-NNRAKLVNKGLHDLTELWNLVFIQYNRKSNESVDLLPEKHVDTGMGFERL 312

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHLRSSSF 284
             VLQ K +NYD D F +L++A +  + +         K   +   ++RV+ DH R  + 
Sbjct: 313 TAVLQGKISNYDTDNFTYLLKAIQNCSKIPEYRGTFGEKDWNSLDASYRVLADHARMVTV 372

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL-CTEMGSAYPELIQA 343
            +AD ++P    +   LRR+MRRA      +   +  ++  L       +G  YPE+ + 
Sbjct: 373 CLADAMIPE---QNQKLRRVMRRAFLLCENVFNKDSGLLKELSNYVIEHLGCVYPEMERN 429

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN-GDVAFKLYDTHGLPLDIMQ 402
              I + +  E+E +     +       +  H  K   L+  +    +     +     +
Sbjct: 430 VKQIHQIIDYEEEVYKSVRKQATEEWVKLAKHQPKLLSLDINENPSLVAGYKEISSTNPK 489

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-----GATQF 457
            I         D    ++      ++             +     ++ K      G    
Sbjct: 490 FIDAQLAFKLYDTFGLDEDSISSLAQILNLPFNASDLHKQLELAKIRSKEQGLVSGPNV- 548

Query: 458 IGYDLLRGSKFMKEDRKVLC---QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
             Y+ L  +K  K DR  L    +K    + + +  ++  IV+  ++V +  S     +V
Sbjct: 549 --YEQLTRAKVPKTDRSTLYNYAKKGEKYVFDDLEVVILKIVKDSKLVRQIESENFYGLV 606

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV--HHAIVERGILRTEMSLV 572
            D++ FY EAGGQ+ D G         ++T+ Q     I         E G ++  M+  
Sbjct: 607 LDKSSFYTEAGGQISDRGAINFGDCVFEVTEAQDCNGYILHKGFLRSGESGRVKVGMTGS 666

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAE 631
           L ID   R +   NH+A HLL+  L  + G+   Q  S +T +    DV    + ++  E
Sbjct: 667 LKIDPDFRLKNMRNHTAVHLLNSVLKKVKGATC-QKSSKVTQNYFNLDVGIFAEKLSLDE 725

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVH 689
           L+ +E  +  +I   LPV    ++ +         L+    Y +  +RVV V+  + G  
Sbjct: 726 LELVESTITKVIQGRLPVNISELDSQRLANLDEIILIPGEVYPETGIRVVEVKGGE-GFL 784

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   C GTHV +T +I    IVS  S+      I  +TG RA+         L +L +  
Sbjct: 785 SREPCCGTHVLNTSDIEDFCIVSMKSLGRSTTSIHGVTGDRAKVAKSNGTHLLTNLETLE 844

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHA-KRKLQLNVEDLSCHKIADV-NFMSHIISEVDSK 807
           K    N+  + + +       +       + +  +  +   + AD+ N +S  I +   +
Sbjct: 845 KSVSDNI-DKPDVLNMAITSFKKQLNYSVEDENILPVVVKQQCADILNKISKQIKDSGKR 903

Query: 808 ELKSVMD-ALQKKIQSGI 824
            L+  ++  ++  ++S +
Sbjct: 904 NLREFIEIEMRNAMESNV 921


>gi|73957020|ref|XP_861855.1| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
           (AlaRS) isoform 3 [Canis familiaris]
          Length = 852

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 257/858 (29%), Positives = 401/858 (46%), Gaps = 83/858 (9%)

Query: 109 LAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNF 160
           +A +LLT+EF +   RLY+T +  DE        E  ++W+ + GL   KI+     DNF
Sbjct: 1   MALELLTQEFGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNF 59

Query: 161 WSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP 220
           W M +TGPCGPCSEI +D+           +++    +EIWNLVF+Q+ +++      LP
Sbjct: 60  WEMGDTGPCGPCSEIHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLP 118

Query: 221 KMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVN 271
           K SIDTGMGLER+ +VLQ K +NYD DLF    +A ++ TG +               + 
Sbjct: 119 KKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGIDMA 178

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330
           +RV+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  + 
Sbjct: 179 YRVLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVV 238

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +G A+PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ L
Sbjct: 239 QSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCNTIPGDTAWLL 298

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           YDT+G P+D+   I   +G+  +D+  F +    +R  A+  S G G+G  + I   +  
Sbjct: 299 YDTYGFPVDLTGLIAEEKGM-VVDMDGFEE----ERKLAQLKSQGKGAGGEDLIMLDIYA 353

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
                +  G +    S                     V + V A+ +    VEE  +GQ+
Sbjct: 354 IEELRE-KGLEATEDSPK----YNYHSDSSGSYTFENVVATVVALRRDKMFVEEVSTGQE 408

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
             VV D+T FYAE GGQ+ D G  +        +++ T    +  G +V H     G LR
Sbjct: 409 CGVVLDKTCFYAEQGGQIYDEGYLVKVEDNSEDKMEFTVKNAQVRGGYVLHIGTIYGSLR 468

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    
Sbjct: 469 VGDQVRLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGA 527

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE--- 682
           +++ ++K  E+  N +I    PV T+           G  A+    Y D VRVVS+    
Sbjct: 528 MSTQQIKKAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 587

Query: 683 --------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                      G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  
Sbjct: 588 SELLEDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKA 647

Query: 735 LMGQDEKLKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQ 780
           L   +    SL+   + +K       +V   + ++ E        +++K +     + L+
Sbjct: 648 LRKAESLKNSLSVMEAKVKAQTAPNKDVQREIADLGEVLATAVIPQWQKDEFRENLKSLK 707

Query: 781 LNVEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQ 821
             ++DL     ADV                     +  + S   +K L   +   +    
Sbjct: 708 KIMDDLDRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSP 767

Query: 822 SGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
               ML  +  E  + + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G
Sbjct: 768 ETSAMLFTVDNEAGRITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATG 826

Query: 880 PNGNKADQAIAGVASFLK 897
            N     +A+    SF +
Sbjct: 827 KNVGCLQEALQLATSFAQ 844


>gi|198467159|ref|XP_001354280.2| GA18318 [Drosophila pseudoobscura pseudoobscura]
 gi|198149531|gb|EAL31333.2| GA18318 [Drosophila pseudoobscura pseudoobscura]
          Length = 1013

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 240/1018 (23%), Positives = 415/1018 (40%), Gaps = 145/1018 (14%)

Query: 3    NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR TF++FF   + H+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V
Sbjct: 13   TAREIRKTFIDFFTVNHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRV 72

Query: 62   TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
               QKCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK+ A  +A +LL   +++D
Sbjct: 73   VNSQKCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKQEACAMALELLRGPYNID 132

Query: 122  QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
              RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+
Sbjct: 133  PGRLYVTYFAGDKLLGIPADMECFEIWRSL-GFPASRILPFGCKDNFWEMGATGPCGPCT 191

Query: 174  EIFFDQGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
            EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGMG 
Sbjct: 192  EIHIDHRPELGSVADRGKLVNAGRSDLTELWNLVFIQYNRNPDGSISQLPAHHVDTGMGF 251

Query: 231  ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLR 280
            ER+A +LQ K++NYD DLF  L    +Q++     G +            ++R++ DH R
Sbjct: 252  ERLAAILQSKSSNYDTDLFSPLFDGIQQLSKAPVYGGSFPETSNAALLDTSYRILADHAR 311

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
              +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYPE+
Sbjct: 312  MVTACLADGMLPD---QNQKLRRVLRKALNISEHVFAHEKLLSQLVPIVVETLGEAYPEM 368

Query: 341  IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG----------------------- 377
               +  + + +  E + +    +        VL+                          
Sbjct: 369  SAKQEAVIDLINHEHDVYKNLRESSSKAFAEVLTEFPNLDDIDLMECPGFVPAYREFQVQ 428

Query: 378  ----KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                 +  + GD  +KL DT+GL  +     L        D+  +   +   + +++   
Sbjct: 429  RCKFPNNTIPGDFLYKLTDTYGLTEESF-LKLAELENMNCDLDRYRAEVSLAKIKSKESQ 487

Query: 434  LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
               G      +   + E            LR +    +       +        + S V 
Sbjct: 488  REDGGICDVALEQRIAEAQATLT----KRLRPTDNSHKYVYSFDSENESYKIPTLRSRVV 543

Query: 494  AIVQQGEIVEEAV------SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
             ++     V          +   + +V   + FY E+GGQ  D G  +            
Sbjct: 544  GMLLNDAEVSRTQGSRLQDTSDTLSIVTAASNFYYESGGQQSDAGQILVSNAHKPEQPHH 603

Query: 548  ------KKAEGIFVHHAIVERGILR------TEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                   K     V H                   + L +D   R+  + +H+ATHLL+ 
Sbjct: 604  LLNVIRVKHLNDCVVHVCRLAAPADDHFEVAIGDEVELQVDSGTRQLNTCHHTATHLLNA 663

Query: 596  ALSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            A+ ++      Q  S +T +  + ++    K I  A+++ IED +N II     V   ++
Sbjct: 664  AIRSLFNKVTYQVSSSVTSEQCKLELGLLGKRIQKADVQLIEDLINRIICSATTVQVELV 723

Query: 655  NREDAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            +  D +      ++    Y ++ +R++SV+  D  + S  LC GTHV++T E+    IV+
Sbjct: 724  SAADVLQENDITMVPGEVYPEQGLRLISVQCPDMQLSSKELCCGTHVTNTSELSCFCIVN 783

Query: 713  ESSIRAGIRRIEAITGQRARSHLMG---------------QDEKLKSLASF--------- 748
                        A+ GQ A + L                 Q +KL +             
Sbjct: 784  LKQTNRARFAFTAVAGQAAENVLKTAALLRHRVDMLEQQFQTDKLTNATEIELQTIRHNM 843

Query: 749  LKVSQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-IADVNFMSHI 800
            L            + + R+ ++ +  ++      K  +++ + +L   K +    F+ H 
Sbjct: 844  LHTDIKLPYAFKMDTLERIHDMLKRIKETSRTTLKEFVEVEMRNLLQEKPVDTHPFILHY 903

Query: 801  ISEVDSKELKSVMDAL----QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDL 855
            I+        ++++ +      K+ S   +LV    +        V ++ +++ F+A   
Sbjct: 904  ITSS------ALVEEIPLQRATKLCSDRPILVVSMCDSVVKARCCVPQNSVNQEFDASSW 957

Query: 856  ARLSAKVLGGGGGGGRPHMAQSGGPNG----------------NKADQAIAGVASFLK 897
             +  A   GG        +A   G N                  + +QA+A    + K
Sbjct: 958  LQSFAATFGG-------QVAAPKGQNPKIVCNMKGRKVSNLFEEQLEQALAKAHQYAK 1008


>gi|307176881|gb|EFN66222.1| Alanyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]
          Length = 1005

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 236/961 (24%), Positives = 390/961 (40%), Gaps = 117/961 (12%)

Query: 2   SNVSSIRTTFLEFFQKNG--HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
            + + IR  FL++F  N   H ++ SS + P  D +L F N+GM  FK IF    +P   
Sbjct: 17  KSANLIRKEFLDYF-SNDLKHSIIRSSPVSPIADQSLAFINAGMNQFKGIFLDYHEPPAA 75

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKC+R GGKHNDL  VG  + HHTFFEMLGN+SFG YFKE A   AW+LLT  + 
Sbjct: 76  KVVNSQKCIRVGGKHNDLSVVGNDSYHHTFFEMLGNWSFGDYFKEDACTYAWNLLTNIYG 135

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           + +  LY+T +          D E   +W ++ GL   K++     DNFW M  +GPCGP
Sbjct: 136 IPEECLYVTYFGGNEKLGMAPDLECKNIWLRL-GLPECKVLPFGMRDNFWEMGLSGPCGP 194

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           C+EI  D            ++     +E+WN+VF+Q+E+        L K  +DTGMG E
Sbjct: 195 CTEIHVDFMRRNTNQAARVNKGYADLMELWNIVFIQYERLANGSIVPLSKHHVDTGMGFE 254

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSS 282
           R+ T LQ K +NYD DLF+ L  A ++                G     +R++ DH R  
Sbjct: 255 RLVTFLQGKKSNYDTDLFQPLFDAIQKHSNAPNYKGTFDNDDTGKLDYGYRILADHTRMV 314

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +  +AD +LP  + +   LRRI+R A+     + +   ++  L   +   + +AYPEL  
Sbjct: 315 TVALADNMLPEEQKK---LRRILRNAINVGEKIFHKSGIVTELAYTVADNLDAAYPELHN 371

Query: 343 AKLLIEETLRSEDERFGKTLD----------------------------RGLVLLDGVLS 374
               ++  +  E++ F +  +                             G   L  +L 
Sbjct: 372 NLKQVQRIIDFEEDLFKRLRNTSGKKWSKMIEIRPELASITDWMAPGLVDGYKELQSMLK 431

Query: 375 HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
            L K  IL+G VAFKLYDT+GL  + +   L        D I F + L+  R +++    
Sbjct: 432 ELRKTNILSGTVAFKLYDTYGLNSETIA-ELAEIESLHFDEIDFEKQLDNHRYQSKIGLD 490

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
                T E +    K+    T                 +              ++S +  
Sbjct: 491 KNSILTKESLEILEKDHVPKTN-------------DSFKYNYTYNGNNYEFPALNSKLIG 537

Query: 495 IVQQGEIV-----------EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
           I+  GE+V           E   S  ++ ++ D+T  Y+  GGQ+ D G      +   I
Sbjct: 538 IIINGELVINKTRKTINVKEIYNSTDEIGIILDKTVCYSSEGGQVSDIGNISIKNLFFNI 597

Query: 544 TDVQKKAEGIFVHHAIVERGIL------RTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            +V K    +       +  +       +     ++ I+   R     +H+ATHLL+ AL
Sbjct: 598 DNVIKINGYVIHSGYFAKIDLPTSELYLQIGDDCLVNIEPNIRIGAMKHHTATHLLNAAL 657

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
             ++   V Q+ S +  D L+F        +T  +++ IE  +N+II     +    +N 
Sbjct: 658 KQVMQV-VYQSSSTVNADNLKFQFNSFGEQLTLDQMRIIEHCINNIIQTRAAITVETLNL 716

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            + +      L+  +      +  +E     + S   C GTHV +T  +     ++ +S 
Sbjct: 717 LELLKQDDITLIPGEIYPYTGIKVIEINANNLKSKETCCGTHVHNTSVLQHFCFLTYTSK 776

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASF---LKVSQ---GNVVGRVEEIWEEYRK- 769
               R ++AI GQ A       +   + +A     LK ++         +  I +E    
Sbjct: 777 GTTKRTVKAIVGQEALRMKQAGERISQRIAELEETLKSNKFTYEQFQEEINRIKQEINDP 836

Query: 770 ---------LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
                     +      +       L   +    + +  I + +DS      +     K 
Sbjct: 837 NIQTLPYLIKEKCLTSLENLNKAIWLQEKENEKASIIREITNTLDSS---CFIVHCLNKN 893

Query: 821 Q------------SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867
                        S + +LV     +       V ++++ + FNA     +  ++  G  
Sbjct: 894 PTYLSLHEVISPFSKVPILVLSITNRSVKARCSVPQEIVSKAFNAQTWMDVILQIFNGKQ 953

Query: 868 G 868
           G
Sbjct: 954 G 954


>gi|1321619|gb|AAA99922.1| alanyl-tRNA synthetase [Vibrio cholerae]
          Length = 409

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 206/405 (50%), Positives = 268/405 (66%), Gaps = 13/405 (3%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK+ F G EK  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDCFLGLEKRAYTRATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN----- 157
           KE AIQ AW+ LT    L + RL +TVY+ D+EAF +W K  G+ AD+IIRI        
Sbjct: 61  KEDAIQYAWEFLTDVLQLPKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKK 120

Query: 158 ---DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNK 213
              DNFW M +TGPCGPC+EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +   
Sbjct: 121 FDSDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHAD 180

Query: 214 QERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR 273
                LPK S+DTGMG+ER++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + R
Sbjct: 181 GTMEPLPKPSVDTGMGIERISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLR 238

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM 333
           V+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ +   LG        L+  L   M
Sbjct: 239 VVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVM 298

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393
           G+A  EL + + L+E+ LR E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT
Sbjct: 299 GTAGVELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDT 357

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438
           +G P D+  D+   RG + ID   F QA+EEQR RAR        
Sbjct: 358 YGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRAREAGQFGTD 401


>gi|330960444|gb|EGH60704.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 316

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/318 (56%), Positives = 223/318 (70%), Gaps = 12/318 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKDIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+L
Sbjct: 241 RVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVL 298

Query: 292 PANEGRGYVLRRIMRRAM 309
           P+NEGRGYVLRRI+RRA 
Sbjct: 299 PSNEGRGYVLRRIIRRAC 316


>gi|322795678|gb|EFZ18357.1| hypothetical protein SINV_04921 [Solenopsis invicta]
          Length = 1018

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 234/960 (24%), Positives = 403/960 (41%), Gaps = 108/960 (11%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + IR+ FL++F +   H  + SS + P  D +L F N+GM  FK IF    KP    
Sbjct: 16  KPANLIRSEFLDYFMKDLNHSFIRSSPVSPITDQSLAFINAGMNQFKGIFLDYYKPPVTK 75

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R GGKHNDL  VG    HHTFFEMLGN+SFG YFKE A   AW+LLT  +D+
Sbjct: 76  AVNSQKCIRVGGKHNDLSAVGNDGYHHTFFEMLGNWSFGDYFKEDACSYAWNLLTNVYDI 135

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  LY+T +  DE        E   +W K+ GL  +KI+     DNFW M  +GPCGPC
Sbjct: 136 PKEWLYVTYFGGDEKLGMSPDLECKDIWLKL-GLPENKILPFGMEDNFWEMGISGPCGPC 194

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D  +         ++     +E+WN+VF+Q+E+        LP   +DTGMG ER
Sbjct: 195 TEIYIDFTKQSANQAEQINKGYPNIMELWNIVFIQYERLANGYIVPLPNHHVDTGMGFER 254

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHLRSSS 283
           + ++LQ K +NYD DLF+ L  A ++ +              G     +R++ DH R  +
Sbjct: 255 LVSLLQGKKSNYDTDLFQPLFNAIQKRSNAPEYKGTFGDDDTGKIDYGYRILADHTRMIT 314

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
             +AD +LP    +   LR+++R A+     +     ++  L+  +   +G AYPEL   
Sbjct: 315 VALADHMLPE---QHPKLRKVLRNAIDVGEKVFKKPSIVSELVCNVADNLGVAYPELHTN 371

Query: 344 KLLIEETLRSEDERFGKTLD----------------------------RGLVLLDGVLSH 375
              ++  +  ED+   +  +                             G   L  +L  
Sbjct: 372 LKQVQRIIDFEDDLLKRLRNTSGKMWSKIVETRPELTAITDSMAPGLVDGYKDLQSMLKE 431

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
           L K  +L+G VAFKLYDT+GL  + + ++     L   D I F + L  ++ ++R     
Sbjct: 432 LRKTNVLSGTVAFKLYDTYGLNSETIAELAQIESLH-FDEIGFEEQLNNRKYQSRFGLGK 490

Query: 436 LGSGTTEKIWFSLKEKY-GATQ--FIG---YDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
             +  T++    LK+ +   T   F     YD           + +        + N   
Sbjct: 491 HSTVITKESLGILKKNHVPKTDDSFKYNYTYDGNTYKFPALNSKLIGILLNGELVANKND 550

Query: 490 SIVKAIVQQGEIV-----EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
           S +  I      +     +      ++ ++ D+T  Y+  GGQ+ D G      +   + 
Sbjct: 551 SNITKINNADHKITINIGKIQSDTDEIGIILDRTVCYSLEGGQVSDKGNICIKNLLFNVD 610

Query: 545 DVQKKAEGIFVHHAIVERG------ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +V+K +  +       +         L+     ++ I+   R     +H+ATHLL+ AL 
Sbjct: 611 NVRKVSGYVIHSGHFTKTDLSISDLHLQIGDDCLVNIEPNIRIGAMKHHTATHLLNAALK 670

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            I+   + Q G  +  D L+F        +TS ++K+IE  +N+II  ++      +N  
Sbjct: 671 QIMQV-IYQRGCTVDMDSLKFQFNSFGEQLTSQQMKAIEVCINNIIQSHVATTVHTVNSL 729

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           + +      L+  +      +  VE     + +   C GTHV +TG +     ++ +S  
Sbjct: 730 ELLKQNDVTLVPGEIYPYTGIKIVEINTNDLKAKETCCGTHVHNTGVLQHFCFLTYTSKG 789

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLA-------------SFLKVSQGNVVGRVEE-- 762
           A  R I+A+ G  A       +   + LA                      +   + +  
Sbjct: 790 ATKRTIKAVVGPEALRSKQAGERICQRLAEIEDALLTDKFTYELFNAEINQIKQEINDQH 849

Query: 763 -------IWEE-----YRKLQLIHAKRKLQLNVEDLSCHKIADVN----FMSHIISEVDS 806
                  + ++        L      R+ ++  + ++      +N    F+ + +++  +
Sbjct: 850 TQVPLPYLIKQRCLTHLENLSKTMWLRQKEIEKDSITREITNAINSSSYFIVYCLNKNPT 909

Query: 807 K-ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLG 864
              L  V+        SGI +L+             + ++ + + FNA     +  ++  
Sbjct: 910 YLSLHEVVSLF-----SGIPILILSYTNGFVKARCTIPQETISNTFNAQTWMNIVLQIFN 964


>gi|195376313|ref|XP_002046941.1| GJ13159 [Drosophila virilis]
 gi|194154099|gb|EDW69283.1| GJ13159 [Drosophila virilis]
          Length = 1009

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 229/966 (23%), Positives = 397/966 (41%), Gaps = 118/966 (12%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR  F+++F   + H+ + SS ++P  DPT+ F N+GM  FK +F G     Y+ V
Sbjct: 13  TAREIRKIFIDYFTVNHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKTVFLGTAAAPYKRV 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK  A  +A +LL   +++D
Sbjct: 73  VNSQKCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNID 132

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  D+        E F++W+ + G  A++++     DNFW M  TGPCGPC+
Sbjct: 133 PSRLYVTYFAGDKLLGIPADLECFEIWRSL-GFPAERVLPFGCKDNFWEMGTTGPCGPCT 191

Query: 174 EIFFDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           EI  D         +       +       E+WNLVF+Q+ +        LP   +DTGM
Sbjct: 192 EIHIDHRPGSGPNSVEQRAKLVNAGRADLTELWNLVFIQYNRNADGSITQLPARHVDTGM 251

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDH 278
           G ER+A +LQ K++NYD DLF  L      ++     G +            ++R++ DH
Sbjct: 252 GFERLAALLQNKSSNYDTDLFTPLFDGIHSLSKAPVYGGSFPDAQNSALLDTSYRILADH 311

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R  +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYP
Sbjct: 312 ARMVTACLADGMLPD---QNQKLRRVLRKALSISEQVFGHEKLLSQLVPIVVETLGEAYP 368

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--------------------- 377
           E+   +  + E +  E E +    +        VL+                        
Sbjct: 369 EMSTKQQAVIELILHEQEVYKNLRESSSKAFAEVLTEFPKLDDIDLMECPGFVPAYREFQ 428

Query: 378 ------KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
                  +  + GD  +KL DT+GL  +     L        D+  +   L   + + + 
Sbjct: 429 VQRSNFPNNTIPGDFLYKLTDTYGLTEESF-LKLAELENMNCDLDRYRAELALAKLKTKE 487

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                G             +   T+      L  +    +      +         V+S 
Sbjct: 488 PQRSSGDYDLALQQRIADAQAQLTK-----RLAPTDNSHKYIYSYDEANETYSIPTVTSR 542

Query: 492 VKAIVQQGEIVEEAVSGQ---KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
           V  ++Q    V      +    + +V   + FY E+GGQ  D G  +           Q 
Sbjct: 543 VLGMLQNDVEVSRTRLEEPLNTLSIVTAASNFYYESGGQQSDLGKLLVRNTHKPEEPHQL 602

Query: 549 KAEGIFVHHAIVERGILR----------TEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +  G+   +  V                    + L +D   R+  + +H+ATHLL+ A+ 
Sbjct: 603 EVVGVKHLNDCVVHVCRPITSADDFELAVGDEVQLEVDAMQRQLNTCHHTATHLLNAAIR 662

Query: 599 TILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
           ++      Q  S ++ +  + ++    K I  A+++ IED +N  I    PV  + ++  
Sbjct: 663 SLFNKVTYQVSSAVSGEQCKLELGLLGKRIQKADVQHIEDLINRAICSATPVQVQELSAA 722

Query: 658 DAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           D +      ++    Y ++ +R++ V+  +  + S  LC GTHV++T E+    IV+   
Sbjct: 723 DVLQQNDITMVPGEVYPEQGLRLIKVQCPELSLSSKELCCGTHVTNTKELSCFCIVNLKQ 782

Query: 716 IRAGIRRIEAITGQRARSHLMGQ---DEKLKSLASFLKVSQG------------------ 754
                    A+ GQ A + L        ++  L    K  +                   
Sbjct: 783 TNRARFAFTAVAGQAAENVLKTAALLRHRVDMLEKQFKTDKLTNATETELQTIRHNMLHS 842

Query: 755 ----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
                     + + R+ EI  + ++      K  +++ + ++   K  D +         
Sbjct: 843 DIKLPYAFKMDTLDRINEILRKLKETSRTTLKEFVEVEMRNVLLEKPLDTHPYILHFISS 902

Query: 805 DSKELKSVMDAL----QKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLS 859
            +     +++ +      K+ +   +LV    +        V ++ + ++FNA    +  
Sbjct: 903 SA-----LVEEIPLQRATKLCTDRPILVVSMCDNIVKARCCVPQNCISEQFNATLWLQSF 957

Query: 860 AKVLGG 865
           AK  GG
Sbjct: 958 AKTFGG 963


>gi|195491933|ref|XP_002093777.1| GE21485 [Drosophila yakuba]
 gi|194179878|gb|EDW93489.1| GE21485 [Drosophila yakuba]
          Length = 1012

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 227/970 (23%), Positives = 397/970 (40%), Gaps = 121/970 (12%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     +Q V
Sbjct: 13  TAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHQRV 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   +++D
Sbjct: 73  ANSQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNID 132

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+
Sbjct: 133 PGRLYVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMGATGPCGPCT 191

Query: 174 EIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGMG 
Sbjct: 192 EIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGTISQLPAHHVDTGMGF 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLR 280
           ER+  VLQ K++NYD DLF  +    +Q         +            ++R++ DH R
Sbjct: 252 ERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKSPVYSGSFPVDGNGALLDTSYRILADHAR 311

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
             +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYPE+
Sbjct: 312 MVTACLADGMLPD---QNQKLRRVLRKALNISEHVFAQDKLLTQLVPIVVETLGEAYPEM 368

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG----------------------- 377
              +  + + +  E E +    +        VL                           
Sbjct: 369 AAKQQAVIDLISHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYREFQVQ 428

Query: 378 ----KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                +  + GD  +KL DT+GL  +     L        D+  +   +   + +A+ + 
Sbjct: 429 RSKFPNNTIPGDFLYKLTDTYGLTEESF-LKLAELENMNCDLERYRAEVNLAKIKAKGNQ 487

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
             +  G+   +    +             L  +    +      +         + + V 
Sbjct: 488 REIAGGSLCDLANEQRIAEAQAMLT--KRLAPTDNSHKYAYSFDKASDSYQIPPLKTRVL 545

Query: 494 AIVQQGEIVEEAVSG-------QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
            ++     V               + +V   + FY E+GGQ  D G  +    +      
Sbjct: 546 GMLLNDAEVSRTQGSRIQQPSTDLISIVTAASNFYYESGGQQSDGGKILVRNHQQPEHPH 605

Query: 547 QKKAEGI-----FVHHAIVERGILR-----TEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                 +      V H                  + L +D Q R+  + +H+ATHLL+ A
Sbjct: 606 LLDVISVKHLNDCVVHVCKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHHTATHLLNAA 665

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPI-TSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           + ++      Q  S +T D  + ++         ++++ IED +N +I    PV  ++++
Sbjct: 666 IRSLFKKVTYQVSSSVTSDQCKLELGLLGKRLQKSDVQLIEDLINRVICSATPVQVQLLS 725

Query: 656 REDAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             + +      ++    Y ++ +R+V+VE  +  + S  LC GTH ++T E+    IV+ 
Sbjct: 726 AAEVLQQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSSFCIVNL 785

Query: 714 SSIRAGIRRIEAITGQRARSHL-----------------------MGQDEKLKSLA-SFL 749
                      A+ GQ A + L                          + +L+++  + L
Sbjct: 786 KQTNRARFAFTAVAGQAAENVLKTAAVLRHRVDLLEKQFQTDKLTNATEAELQTIRHNML 845

Query: 750 KVSQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHII 801
                       + + R+ E+ +  +       K  + + +  L   K  D N F+ H +
Sbjct: 846 HTDIKLPYAFKMDTLERITEMLKRIKDSSRTTLKEFVDVEMRTLLQEKPLDTNPFILHYL 905

Query: 802 SEVDSKELKSVMDAL-----QKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDL 855
           +        ++++ +      K  Q   I+++ +  +        V E+ + ++FNA   
Sbjct: 906 TSS------ALVEEIPLQRATKLCQDRPILVISV-CDSVVKARCCVPENCITEKFNASAW 958

Query: 856 ARLSAKVLGG 865
            +  A    G
Sbjct: 959 LQSFADTFNG 968


>gi|6176438|gb|AAF05591.1|AF188716_1 alanyl-tRNA synthetase [Drosophila melanogaster]
          Length = 1012

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/970 (23%), Positives = 397/970 (40%), Gaps = 121/970 (12%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V
Sbjct: 13  TAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRV 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   +++D
Sbjct: 73  VNSQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNID 132

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+
Sbjct: 133 PGRLYVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMGATGPCGPCT 191

Query: 174 EIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGMG 
Sbjct: 192 EIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMGF 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLR 280
           ER+  VLQ K++NYD DLF  +    +Q         +            ++R++ DH R
Sbjct: 252 ERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKTPVYSGSFPDGGNAAVLDTSYRILADHAR 311

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
             +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYPE+
Sbjct: 312 MVTACLADGMLPD---QNQKLRRVLRKALNISEHVFAHDKLLTQLVPIVVETLGEAYPEM 368

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK---------------------- 378
              +  + + +  E E +    +        VL                           
Sbjct: 369 AAKQQAVIDLICHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYRELQMQ 428

Query: 379 -----DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                +  + GD  +KL DT+GL  +     L        D+  +   +   + +A+ + 
Sbjct: 429 RCKFSNNTIPGDFLYKLTDTYGLTEESF-LKLAELENMNCDLERYRAEVNLAKLKAKGNQ 487

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                G+   +    +             L  +    +      ++        + + V 
Sbjct: 488 RETAGGSLCDLATEQRIAEAQAMLT--KRLTPTDNSHKYTYSFDKESDSYQIPPLKTRVL 545

Query: 494 AIVQQGEIVEEAVSG-------QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
            ++     V               + +V   + FY E+GGQ  D G  +    +      
Sbjct: 546 GMLLNDAEVSRTQGSRIQQPFTDLISIVTAGSNFYYESGGQQSDGGKILVSNHQQPDHPH 605

Query: 547 QKKAEGIFVHHAIVERGIL----------RTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                G+   +  V                    + L +D Q R+  + +H+ATHLL+ A
Sbjct: 606 SLDVIGVKHLNDCVVHICKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHHTATHLLNAA 665

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           + ++      Q  S ++ D  + ++    K I   +++ IED +N +I    PV  ++++
Sbjct: 666 IRSLFKKVTYQVSSSVSSDQCKLELGLLGKRIQKTDVQLIEDLINRVICSAAPVEVQLLS 725

Query: 656 REDAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             + +      ++    Y ++ +R+V+VE  +  + S  LC GTH ++T E+    IV+ 
Sbjct: 726 AAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSCFCIVNL 785

Query: 714 SSIRAGIRRIEAITGQRARSHL-----------------------MGQDEKLKSLA-SFL 749
                      A+ GQ A + L                          + +L+++  + L
Sbjct: 786 KQTNRARFAFTAVAGQAAENVLKTAALLRHRVDLLEKQFQTDKLTNATEAELQTIRHNML 845

Query: 750 KVSQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHII 801
                       + + R+ E+ +  +       K  + + +  L   K  D + F+ H I
Sbjct: 846 HTDIKLPYAFKMDTLERITEMLKRIKDSSRTTLKEFVDVEMRTLLQEKPLDTHPFILHYI 905

Query: 802 SEVDSKELKSVMDAL-----QKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDL 855
           +        ++++ +      K      I+++ +  +        V E  + ++FNA   
Sbjct: 906 TSS------ALVEEIPLQRATKLCPDRPILVISV-CDSVVKARCCVPEKCITEKFNASAW 958

Query: 856 ARLSAKVLGG 865
            +  A    G
Sbjct: 959 LQSFADTFNG 968


>gi|170047897|ref|XP_001851441.1| alanyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167870139|gb|EDS33522.1| alanyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 1007

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 238/953 (24%), Positives = 410/953 (43%), Gaps = 116/953 (12%)

Query: 3   NVSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + + IR  FL+FF + +GH ++ SS ++P +DPT+ F N+GM  FK++F G+ +   +  
Sbjct: 36  SSAEIRRRFLDFFVRDHGHRVVRSSPVVPFSDPTIAFVNAGMNQFKSVFLGEREAPCRRA 95

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHND+  VG    HHTFFEMLGN+SFG YFK  A ++A  LL   + +D
Sbjct: 96  VNSQKCVRVGGKHNDIGVVGTDGYHHTFFEMLGNWSFGDYFKREACEMALSLLKDVYRID 155

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            RR+Y+T +          D E  ++W  + G+  ++I+     DNFW M  +GPCGPC+
Sbjct: 156 ARRMYVTYFGGDAAMGLPADLECREIWASL-GIPEERILPFGARDNFWEMGSSGPCGPCT 214

Query: 174 EIFFDQGECIPGGLP---GSSEEGERYIEIWNLVFMQFEQ-QNKQERFILPKMSIDTGMG 229
           EI  D  +            +       E+WN+VF+Q+ +         LP+  +DTG+G
Sbjct: 215 EIHIDHSDQFGNVAERSRYVNAGLPDLTEVWNVVFIQYNRGLGDGRITDLPQRHVDTGLG 274

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHL 279
           LER+   LQ+K +NYD DLF  L +  EQ++                     +R++ DH 
Sbjct: 275 LERLVAHLQQKNSNYDTDLFVPLFERMEQISRKDKYQGVFDARHRNYELDTAYRIVADHT 334

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  ++DG+ P+   + + LRRI+RR +  +     +  L+  L+P +   +G  YPE
Sbjct: 335 RMITACLSDGMFPS---QSHKLRRILRRTLSLSERTFGSPHLLRELVPVVVEILGETYPE 391

Query: 340 LIQAKLLIEETLRSEDERFGK------------------------TLDRGLVLLDGVLSH 375
           + +        +R E+E + +                            GL      +  
Sbjct: 392 MDKKLTESLAIIRHEEECYRQLRSALTSESRDLLKRNPWIDESELIDHPGLPHALKEIRK 451

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
           L     L+G    K+YDT+GL  D+++ I        +D+  +    ++ +  A+     
Sbjct: 452 LNGANKLDGTFIHKMYDTYGLDEDLLEKIAN-FERLELDLAGYETFSKQLKQGAKLEL-- 508

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
             +   ++     +E   +T          ++ + +   V            + + + +I
Sbjct: 509 --ANQLQQSLGRSRELLSST------QAGPTRNVYKYNYVYNGDKQTYDVPQLKTKITSI 560

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIF 554
                 V+ A SG    V+ + + FY EAGGQ  DTG   +     +Q           +
Sbjct: 561 ------VKSATSG--CHVITEASNFYFEAGGQQSDTGRIWLAADPAVQFEVKSVGECQGY 612

Query: 555 VHHAIVE---RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           V H++ +    G++     +VL +D   R    I+H+ATHLL+ A   +LG  + Q  S 
Sbjct: 613 VIHSVEDGAATGLISVGDEVVLAVDAARRTSNIIHHTATHLLNAATRKVLGVPMCQRSSV 672

Query: 612 ITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
           +   GLR ++      +   E+ +IE  V   I QN PV  R+ N  D   +    + G 
Sbjct: 673 VGDKGLRLELAVCGAKVGPDEVDAIETIVRQSIRQNEPVRIRVCNASDVDLNKVTTIPGE 732

Query: 671 KYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            Y +R +R+V +    G   S+  C GTH   T E+    I + +  + G     AI G+
Sbjct: 733 IYPERGLRLVDI----GASTSTEFCCGTHAQQTAELQDFCITNLAQSKPGCFTFHAIAGE 788

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A        +    +           +  V  +    ++L+ +             +  
Sbjct: 789 PAVKAHQLSAQIGNDVRQLKHDMDQQTISDVPNMDARMQRLKNVLLVGSENNITLPFAER 848

Query: 790 K--IADVNFMSHIISEVDSKELKSVMD----ALQKK------------IQSGIIM----L 827
           +  +  +N +   + +   + L+ ++D     LQ++            ++S IIM    L
Sbjct: 849 QRCLDIINDLFKRLKDHTRESLRELIDIEMKNLQQERPLSAHPFLVHFLESSIIMEEVQL 908

Query: 828 --VGISKEKKASVLIVVTEDLLD------------RFNAVDLARLSAKVLGGG 866
                    +  ++I +T+DL+             +F+A    +L   V   G
Sbjct: 909 SKATRYFPDRPVLVISITDDLVKARACVPAAFQTTQFDAQQWLKLVGGVFKAG 961


>gi|24658214|ref|NP_523932.2| mitochondrial alanyl-tRNA synthetase [Drosophila melanogaster]
 gi|74870584|sp|Q9VRJ1|SYAM_DROME RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor
 gi|7295490|gb|AAF50804.1| mitochondrial alanyl-tRNA synthetase [Drosophila melanogaster]
 gi|21711683|gb|AAM75032.1| LD11251p [Drosophila melanogaster]
 gi|25012817|gb|AAN71499.1| RE74040p [Drosophila melanogaster]
 gi|220943558|gb|ACL84322.1| Aats-ala-m-PA [synthetic construct]
          Length = 1012

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/970 (23%), Positives = 397/970 (40%), Gaps = 121/970 (12%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V
Sbjct: 13  TAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRV 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   +++D
Sbjct: 73  VNSQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNID 132

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+
Sbjct: 133 PGRLYVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMGATGPCGPCT 191

Query: 174 EIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGMG 
Sbjct: 192 EIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMGF 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLR 280
           ER+  VLQ K++NYD DLF  +    +Q         +            ++R++ DH R
Sbjct: 252 ERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKTPVYSGSFPDGGNAAVLDTSYRILADHAR 311

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
             +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYPE+
Sbjct: 312 MVTACLADGMLPD---QNQKLRRVLRKALNISEHVFAHDKLLTQLVPIVVETLGEAYPEM 368

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK---------------------- 378
              +  + + +  E E +    +        VL                           
Sbjct: 369 AAKQQAVIDLICHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYRELQMQ 428

Query: 379 -----DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                +  + GD  +KL DT+GL  +     L        D+  +   +   + +A+ + 
Sbjct: 429 RCKFSNNTIPGDFLYKLTDTYGLTEESF-LKLAELENMNCDLERYRAEVSLAKLKAKGNQ 487

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                G+   +    +             L  +    +      ++        + + V 
Sbjct: 488 RETAGGSLCDLATEQRIAEAQAMLT--KRLTPTDNSHKYTYSFDKESDSYQIPPLKTRVL 545

Query: 494 AIVQQGEIVEEAVSG-------QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
            ++     V               + +V   + FY E+GGQ  D G  +    +      
Sbjct: 546 GMLLNDAEVSRTQGSRIQQPFTDLISIVTAGSNFYYESGGQQSDGGKILVSNHQQPDHPH 605

Query: 547 QKKAEGIFVHHAIVERGIL----------RTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                G+   +  V                    + L +D Q R+  + +H+ATHLL+ A
Sbjct: 606 SLDVIGVKHLNDCVVHICKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHHTATHLLNAA 665

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           + ++      Q  S ++ D  + ++    K I   +++ IED +N +I    PV  ++++
Sbjct: 666 IRSLFKKVTYQVSSSVSSDQCKLELGLLGKRIQKTDVQLIEDLINRVICSAAPVEVQLLS 725

Query: 656 REDAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             + +      ++    Y ++ +R+V+VE  +  + S  LC GTH ++T E+    IV+ 
Sbjct: 726 AAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSCFCIVNL 785

Query: 714 SSIRAGIRRIEAITGQRARSHL-----------------------MGQDEKLKSLA-SFL 749
                      A+ GQ A + L                          + +L+++  + L
Sbjct: 786 KQTNRARFAFTAVAGQAAENVLKTAALLRHRVDLLEKQFQTDKLTNATEAELQTIRHNML 845

Query: 750 KVSQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHII 801
                       + + R+ E+ +  +       K  + + +  L   K  D + F+ H I
Sbjct: 846 HTDIKLPYAFKMDTLERITEMLKRIKDSSRTTLKEFVDVEMRTLLQEKPLDTHPFILHYI 905

Query: 802 SEVDSKELKSVMDAL-----QKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDL 855
           +        ++++ +      K      I+++ +  +        V E  + ++FNA   
Sbjct: 906 TSS------ALVEEIPLQRATKLCPDRPILVISV-CDSVVKARCCVPEKCITEKFNASAW 958

Query: 856 ARLSAKVLGG 865
            +  A    G
Sbjct: 959 LQSFADTFNG 968


>gi|307212580|gb|EFN88295.1| Alanyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]
          Length = 1019

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 243/959 (25%), Positives = 403/959 (42%), Gaps = 107/959 (11%)

Query: 2   SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            + + IR  FL++F K+  H ++ SS + P  D +L FTN+GM  FK IF    +P    
Sbjct: 23  KSANLIRKEFLDYFAKDLKHSIIRSSPVSPITDQSLAFTNAGMNQFKGIFLNYYEPPATK 82

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R GGKHNDL  VG  N HHTFFEMLGN+SFG YFKE A   AW+ LT   D+
Sbjct: 83  VVNSQKCIRVGGKHNDLSVVGNDNYHHTFFEMLGNWSFGDYFKEDACVYAWNFLTNICDI 142

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            Q+ LY+T +          D E   +W K+ GL   KI+     DNFW M  +GPCGPC
Sbjct: 143 PQKYLYVTYFGGNKELGIAPDLECKNIWLKL-GLPEGKILPFDIQDNFWEMGPSGPCGPC 201

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI  D  +         ++     +E+WN+VF+Q+E+        LPK  +DTGMGLER
Sbjct: 202 TEIHVDYMKRPTNQAARVNKGYADLMELWNIVFIQYERLENGCIVPLPKHHVDTGMGLER 261

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSS 283
           + T+LQ KT+NYD D+F+ +  A ++                G     +R++ DH R  +
Sbjct: 262 LVTLLQGKTSNYDTDIFQPIFCAIQKYTKAPEYKGTFNNDDTGKIDYGYRILADHARMIT 321

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
             +AD +LP    +   LR+++R A+     +     ++  L+  +   +G  Y EL   
Sbjct: 322 VALADNMLPE---QHPKLRKVLRNAIDTGEKIFRKTDILAQLVCDVADNLGEVYTELHNN 378

Query: 344 KLLIEETLRSEDERFGKTLD----------------------------RGLVLLDGVLSH 375
              ++  ++ E++ F +  +                             G   L  +L  
Sbjct: 379 LKQVKRIIKFEEDLFNRLRNASNKRWNEMIKIRPELASITDWTAPGLVDGYKNLQTMLKE 438

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
           L K  +L G VAFKLYDT+GL L+ + ++     L   D   F + L+  R ++R     
Sbjct: 439 LCKTNLLPGSVAFKLYDTYGLNLETITELAQIESLH-FDEAGFQKQLDISRYQSRIGFNK 497

Query: 436 LGSGTTEKIWFSLKEKY-GATQ--FIG---YDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
                TEK    L++ +   T   F     YD       M   + +        +T+  S
Sbjct: 498 NNIVFTEKSLRILEKNHMPKTDDSFKYNYTYDGNDYKFPMLNSKLIGIIINGQLVTDTNS 557

Query: 490 SIVKAIVQQGEIV----EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
            I        +I     +   S  ++ ++ D+T  Y+  GGQ+ D G      +   I +
Sbjct: 558 HIANLNDVNNKISINVSDILNSKDEIGIILDKTICYSLEGGQVSDQGNIHIKNLFFNIHN 617

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDY------QNRRQLSINHSATHLLHHALST 599
           V+K    +       +  I  +EM L +  D       Q R     +H+A HLL+ A+  
Sbjct: 618 VRKINGYVIHFGKFEKTDIPPSEMYLEIGDDCLVNIDSQIRVDTMKHHTAAHLLNAAMKE 677

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           ++   V Q    +  + L+F        +T  +++ IE+ +N++I  ++ V  + +N   
Sbjct: 678 VM-HTVYQRACTVDMNNLKFQFNPFGEKLTLEQMRMIENRINNVIQSHVAVTVQTLNSLQ 736

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
            +      L+  +      +  VE     + +   C GTHV +TG +   Y V+ +S  A
Sbjct: 737 LLGQDDITLVPGEIYPYTDIRIVEINAEDLKAKEACCGTHVHNTGVLQHFYFVTYTSKGA 796

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-------VVGRVEEIWEE----- 766
               ++A+ G  A       ++    +A    + Q +          +V +I +E     
Sbjct: 797 AKCDVKAVVGPWALRIKQASEKIQHEVAKLENILQNDKFITYETFDAKVNQIQQEINEQT 856

Query: 767 ----------------YRKLQLI--HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK- 807
                            + L       +++++    D     + D +         +   
Sbjct: 857 EPISLPYLFKVECLTHLKNLSKAKWLKEKEIERTSIDCEITTVTDSSHFIVHCLNKNPTY 916

Query: 808 -ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF-NAVDLARLSAKVLG 864
             L  V+      + SGI +L+             V + ++    NA     +  K+  
Sbjct: 917 LSLHEVV-----SLFSGIPVLILSHNNGFMKARCSVPQKMVSEVFNAQTWMNIVLKIFN 970


>gi|195167795|ref|XP_002024718.1| GL22619 [Drosophila persimilis]
 gi|194108123|gb|EDW30166.1| GL22619 [Drosophila persimilis]
          Length = 1012

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 240/1018 (23%), Positives = 414/1018 (40%), Gaps = 146/1018 (14%)

Query: 3    NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR TF++FF   + H+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V
Sbjct: 13   TAREIRKTFIDFFTVNHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRV 72

Query: 62   TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
               QKCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK  A+  A +LL   +++D
Sbjct: 73   VNSQKCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKRPAL-WALELLRGPYNID 131

Query: 122  QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
              RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+
Sbjct: 132  PGRLYVTYFAGDKLLGIPADMECFEIWRSL-GFPASRILPFGCKDNFWEMGATGPCGPCT 190

Query: 174  EIFFDQGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
            EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGMG 
Sbjct: 191  EIHIDHRPELGSVADRGKLVNAGRSDLTELWNLVFIQYNRNPDGSISQLPAHHVDTGMGF 250

Query: 231  ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLR 280
            ER+A +LQ K++NYD DLF  L    +Q++     G +            ++R++ DH R
Sbjct: 251  ERLAAILQSKSSNYDTDLFSPLFDGIQQLSKAPVYGGSFPETSNAALLDTSYRILADHAR 310

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
              +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYPE+
Sbjct: 311  MVTACLADGMLPD---QNQKLRRVLRKALNISEHVFAHEKLLSQLVPIVVETLGEAYPEM 367

Query: 341  IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG----------------------- 377
               +  + + +  E + +    +        VL+                          
Sbjct: 368  SAKQEAVIDLINHEHDVYKNLRESSSKAFAEVLTEFPNLDDIDLMECPGFVPAYREFQVQ 427

Query: 378  ----KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                 +  + GD  +KL DT+GL  +     L        D+  +   +   + +++   
Sbjct: 428  RSKFPNNTIPGDFLYKLTDTYGLTEESF-LKLAELENMNCDLDRYRAEVSLAKIKSKESQ 486

Query: 434  LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
               G      +   + E            LR +    +       +        + S V 
Sbjct: 487  REDGGICDVALEQRISEAQATLT----KRLRPTDNSHKYVYSFDSENESYKIPTLRSRVV 542

Query: 494  AIVQQGEIVEEAV------SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
             ++     V          +   + +V   + FY E+GGQ  D G  +            
Sbjct: 543  GMLLNDAEVSRTQGSRLQDTSDTLSIVTAASNFYYESGGQQSDAGQILVSNAHKPEQPHH 602

Query: 548  ------KKAEGIFVHHAIVERGILR------TEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                   K     V H                   + L +D   R+  + +H+ATHLL+ 
Sbjct: 603  LLNVIRVKHLNDCVVHVCRLAAPADDHFEVAIGDEVELQVDSGTRQLNTCHHTATHLLNA 662

Query: 596  ALSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            A+ ++      Q  S +T +  + ++    K I  A+++ IED +N II     V   ++
Sbjct: 663  AIRSLFNKVTYQVSSSVTSEQCKLELGLLGKRIQKADVQLIEDLINRIICSATTVQVELV 722

Query: 655  NREDAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            +  D +      ++    Y ++ +R++SV+  D  + S  LC GTHV++T E+    IV+
Sbjct: 723  SAADVLQENDITMVPGEVYPEQGLRLISVQCPDMQLSSKELCCGTHVTNTSELSCFCIVN 782

Query: 713  ESSIRAGIRRIEAITGQRARSHLMG---------------QDEKLKSLAS---------F 748
                        A+ GQ A + L                 Q +KL +             
Sbjct: 783  LKQTNRARFAFTAVAGQAAENVLKTAALLRHRVDMLEQQFQTDKLTNATEVELQTIRHNM 842

Query: 749  LKVSQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-IADVNFMSHI 800
            L            + + R+ ++ +  ++      K  +++ + +L   K +    F+ H 
Sbjct: 843  LHTDIKLPYAFKMDTLERIHDMLKRIKETSRTTLKEFVEVEMRNLLQEKPVDTHPFILHY 902

Query: 801  ISEVDSKELKSVMDAL----QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDL 855
            I+        ++++ +      K+ S   +LV    +        V ++ +++ F+A   
Sbjct: 903  ITSS------ALVEEIPLQRATKLCSDRPILVVSMCDSVVKARCCVPQNSVNQEFDASSW 956

Query: 856  ARLSAKVLGGGGGGGRPHMAQSGGPNG----------------NKADQAIAGVASFLK 897
             +  A   GG        +A   G N                  + +QA+A    + K
Sbjct: 957  LQSFAATFGG-------QVAAPKGQNPKIVCNMKGRKVSNLFEEQLEQALAKAHQYAK 1007


>gi|195337619|ref|XP_002035426.1| GM14698 [Drosophila sechellia]
 gi|194128519|gb|EDW50562.1| GM14698 [Drosophila sechellia]
          Length = 1012

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 230/973 (23%), Positives = 404/973 (41%), Gaps = 127/973 (13%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V
Sbjct: 13  TAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRV 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   F++D
Sbjct: 73  VNSQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPFNID 132

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  D+        E F++W+ + G  A +I+     DNFW M+ TGPCGPC+
Sbjct: 133 PGRLYVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMSATGPCGPCT 191

Query: 174 EIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGMG 
Sbjct: 192 EIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMGF 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLR 280
           ER+  VLQ K++NYD DLF  +    +Q         +            ++R++ DH R
Sbjct: 252 ERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKAPVYSGSFPDGGNAAVLDTSYRILADHAR 311

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
             +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYPE+
Sbjct: 312 MVTACLADGMLPD---QNQKLRRVLRKALNISEHVFAHDKLLTQLVPIVVETLGEAYPEM 368

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK---------------------- 378
              +  + + +  E E +    +        VL                           
Sbjct: 369 AAKQQAVIDLICHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYREFQVQ 428

Query: 379 -----DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                +  + GD  +KL DT+GL  +     L        D+  +   +   + +A+ + 
Sbjct: 429 RCKFSNNTIPGDFLYKLTDTYGLTEESF-LKLAELENMNCDLERYRAEVSLAKIKAKGNQ 487

Query: 434 LGLGSGTTEKIWFSLKEKYGA---TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                G+   +    +        T+ +G      +    +      ++        + +
Sbjct: 488 RETAGGSLCDLATEQRLSEAQAMLTKHLG-----ATDNSHKYAYSFHKESDSYQIPPLKT 542

Query: 491 IVKAIVQQGEIVEEAVSG-------QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
            V  ++     V               + +V   + FY E+GGQ  D G  +    +   
Sbjct: 543 RVLGMLLNDAEVSRTQGSRIQQPSTDLISIVTAASNFYYESGGQQSDGGKILVSNHQQPE 602

Query: 544 TDVQKKAEGI-----FVHHAIVERGILR-----TEMSLVLTIDYQNRRQLSINHSATHLL 593
                +   +      V H                  + L +D Q R+  + +H+ATHLL
Sbjct: 603 HPHSLEVISVKHLNDCVVHVCKLSSPTDAFQLAIGDEVELLVDAQQRQLNTCHHTATHLL 662

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           + A+ ++      Q  S +T +  + ++    K I  +++K IED +N +I    PV  +
Sbjct: 663 NAAIRSLFKKVTYQVSSSVTSNQCKLELGLLGKRIQKSDVKLIEDLINRVICSAAPVEVQ 722

Query: 653 IMNREDAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           +++  + +      ++    Y ++ +R+V+VE  +  + S  LC GTH ++T E+    I
Sbjct: 723 LLSAAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSCFCI 782

Query: 711 VSESSIRAGIRRIEAITGQRARSHL-----------------------MGQDEKLKSLA- 746
           V+            A+ GQ A + L                          + +L+++  
Sbjct: 783 VNLKQTNRARFAFTAVAGQAAENVLKTAALLRHRVDLLEKQFQTDKLTNATEAELQTIRH 842

Query: 747 SFLKVSQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMS 798
           + L            + + R+ E+ +  +       K  + + +  L   K  D + F+ 
Sbjct: 843 NMLHTDIKLPYAFKMDTLERITEMLKRIKDSSRTTLKEFVDVEMRTLLQEKPLDTHPFIL 902

Query: 799 HIISEVDSKELKSVMDAL-----QKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNA 852
           H I+        ++++ +      K  Q   I+++ +  +        V E+ + ++FNA
Sbjct: 903 HYITSS------ALVEEIPLQRATKVCQDRPILVISV-CDSVVKARCCVPENCITEKFNA 955

Query: 853 VDLARLSAKVLGG 865
               +  A    G
Sbjct: 956 SAWLQSFADTFNG 968


>gi|149236429|ref|XP_001524092.1| alanyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452468|gb|EDK46724.1| alanyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 436

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 161/410 (39%), Positives = 236/410 (57%), Gaps = 29/410 (7%)

Query: 3   NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
             S++R+TFL++F+    H  +PSSS++P NDPTL+F N+GM  +K IF G   P     
Sbjct: 23  TASTVRSTFLDYFKSKRDHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPSSDFA 82

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLT+
Sbjct: 83  KLKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGWSWELLTE 142

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + L++ RLY+T ++ DE        EA   W    G++ D I+     DNFW M + GP
Sbjct: 143 VYGLEKDRLYVTYFEGDEKQGLEPDMEAKNFWLS-VGVAEDHILPGNAKDNFWEMGDQGP 201

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +E+WN+VF+Q+ +++      LP   IDTGM
Sbjct: 202 CGPCSEIHYDRI-GGRNAASLVNMDDPNVLEVWNIVFIQYNRESDGSLRPLPSKHIDTGM 260

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           G ER+ +VLQ K++NYD D+F  +     ++TG++                 +RVI DH+
Sbjct: 261 GFERLVSVLQNKSSNYDTDVFLPIFDKIREITGVRPYTGKFGSEDKDGIDTAYRVIADHV 320

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAY 337
           R+ +F I DG +P NEGRGYVLRRI+RR   Y R             L+  +  +    +
Sbjct: 321 RTLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVDVVIEQNKEIF 380

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGD 385
           PEL +    ++E L  E+  F KTLDRG  L +   +++    ++ L+G 
Sbjct: 381 PELERGVADLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGK 430


>gi|194866940|ref|XP_001971973.1| GG15263 [Drosophila erecta]
 gi|190653756|gb|EDV50999.1| GG15263 [Drosophila erecta]
          Length = 1012

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/969 (23%), Positives = 396/969 (40%), Gaps = 119/969 (12%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V
Sbjct: 13  TAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRV 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   +++D
Sbjct: 73  ANTQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNID 132

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+
Sbjct: 133 PGRLYVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMGATGPCGPCT 191

Query: 174 EIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGMG 
Sbjct: 192 EIHIDHRPDLGSVEQRAKLVNAGRCDLTELWNLVFIQYNRHADGSISRLPAHHVDTGMGF 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLR 280
           ER+  VLQ K++NYD DLF  L    +Q         +            ++R++ DH R
Sbjct: 252 ERLTAVLQNKSSNYDTDLFTPLFDGIQQAAKTPAYSGSFPDAGSAALLDTSYRILADHAR 311

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
             +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYPE+
Sbjct: 312 MVTACLADGMLPD---QNQKLRRVLRKALNISEHVFGHDKLLTQLVPVVVETLGEAYPEM 368

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG----------------------- 377
              +  + + +  E E +    +        VL                           
Sbjct: 369 AAKQQAVIDLISHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYREFQVQ 428

Query: 378 ----KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                +  + G+  +KL DT+GL  +     L        D+  +   +   + +A++  
Sbjct: 429 RGKFPNNTIPGEFLYKLTDTYGLTEESF-LKLAELENMSCDLERYRAEVSLAKIKAKSSQ 487

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
             +  G+   +    +             L  +    +      ++        + + V 
Sbjct: 488 REIPGGSLCDLANEQRIAEAQAMLT--KRLAPTDNSHKYAYSFDKESNSYQIPPLKTRVV 545

Query: 494 AIVQQGEIVEEAVSG-------QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
            ++     V               + +V   + FY E+GGQ  D G  +    +      
Sbjct: 546 GMLLNDAEVSRTQGSRIQQPTTDFISIVTAASSFYYESGGQQSDGGKILVRSHQQPAHPH 605

Query: 547 QKKAEGI-----FVHHAIVERGILR-----TEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                 +      V H                  + L +D Q R+  + +H+ATHLL+ A
Sbjct: 606 LLDVISVKYLNDCVVHVCKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHHTATHLLNAA 665

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           + ++      Q  S +T    + ++    K I  ++++ IED +N +I    PV  ++++
Sbjct: 666 IRSLFKKVTYQVSSSVTSGQCKLELGLLGKRIQKSDVQLIEDLINRVICSATPVQVQVLS 725

Query: 656 REDAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             + +      ++    Y ++ +R+V+VE  +  + S  LC GTH ++T E+    IV+ 
Sbjct: 726 AAEVLQQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSSFCIVNL 785

Query: 714 SSIRAGIRRIEAITGQRARSHL-----------------------MGQDEKLKSLA-SFL 749
                      A+ GQ A + L                          + +L+++  + L
Sbjct: 786 KQTNRARFAFTAVAGQAAENVLKTAALLRHRVDLLEKQFRTDKLTNATEAELQTIRHNML 845

Query: 750 KVSQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHII 801
                       + + R+ E+ +  ++      K  + + +  L   K  D + F+ H I
Sbjct: 846 HTDIKLPYAFKMDTLERITEMLKRIKESSRTTLKEFVDVEMRTLLQEKPLDTHPFILHYI 905

Query: 802 SEVDSKELKSVMDAL----QKKIQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLA 856
           +        ++++ +      K+     +LV    +        V    + ++FNA    
Sbjct: 906 TSS------ALVEEIPLQRATKLCQDRPVLVISVCDSVVKARCCVPVHRITEKFNASAWL 959

Query: 857 RLSAKVLGG 865
           +  A    G
Sbjct: 960 QSFADTFNG 968


>gi|195014128|ref|XP_001983963.1| GH16181 [Drosophila grimshawi]
 gi|193897445|gb|EDV96311.1| GH16181 [Drosophila grimshawi]
          Length = 1012

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 215/804 (26%), Positives = 349/804 (43%), Gaps = 80/804 (9%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR TF+++F   + H+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V
Sbjct: 13  TAREIRKTFIDYFTANHEHKFIRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRV 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK  A  +A +LL   +++D
Sbjct: 73  VNSQKCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNID 132

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  D+        E F +W+ + G  A +I+   + DNFW M  TGPCGPC+
Sbjct: 133 PSRLYVTYFAGDKLLGIPADMECFDIWRSL-GFPAARILPFGSKDNFWEMGTTGPCGPCT 191

Query: 174 EIFFDQGECIPGG-----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           EI  D       G         +       E+WNLVF+Q+ +        LP   +DTGM
Sbjct: 192 EIHIDHRPGSDPGSVEQRAKLVNAGRADLTELWNLVFIQYNRNTDGSITSLPAKHVDTGM 251

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDH 278
           G ER+  +LQ K++NYD DLF  L      ++     G +            ++R++ DH
Sbjct: 252 GFERLTALLQNKSSNYDTDLFTPLFDGIHSLSKAPVYGGSFPVAENSALLDTSYRILADH 311

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R  +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYP
Sbjct: 312 ARMVTACLADGMLPD---QNQKLRRVLRKALSISEQVFSHENLLSQLVPIVVETLGEAYP 368

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-------------------- 378
           E+   +  + E +  E E +    +    +   VL+                        
Sbjct: 369 EMSSKQQAVLELIAHEQEVYKNLRESSSKIFAEVLTEFPNLDDIDLMECPGFVPAYREFQ 428

Query: 379 -------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
                  +  + GD  +KL DT+GL  D     L        D+  +   L   + R + 
Sbjct: 429 VQRSKFANNTIPGDFLYKLTDTYGLTEDSF-VKLAELENMNCDLERYRAELALAKLRTKE 487

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                G           + +   T       L  +    +       +        ++S 
Sbjct: 488 PQRNSGIYDLALQQRIAEAQAQLTM-----RLAATDNSHKYFYSYDAQSETYAIPTLNSR 542

Query: 492 VKAIVQQGEIVEEA------VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           V  I+Q    V          S   + +V   + FY E+GGQ  D G  +    +     
Sbjct: 543 VLGIIQNDAEVSRTLGSRLGESTDTLSIVTAASNFYYESGGQQSDLGKLLVRNKQKPEQP 602

Query: 546 VQKKAEGI-----FVHHAIVERGILR-----TEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            Q    G+      V H                  ++L +D Q R+  + +H+A HLL+ 
Sbjct: 603 HQLDVVGVKCLNDCVVHVCRLATPTDDFELALGDEVLLEVDAQQRQLNTCHHTAIHLLNA 662

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
           A+ ++      Q  S ++ D  + ++    K I  A+++ IED +N  I     V  + +
Sbjct: 663 AIRSLFNKVTYQVSSAVSSDQCKLELGLLGKRIQKADVEHIEDLINRAICSGSAVQVQQL 722

Query: 655 NREDAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +  D +      ++    Y ++ +R+++V+  +  + S  LC GTHV++T E+    IV+
Sbjct: 723 SAADVLQQNDITMVPGEVYPEQGLRLINVQCPELNLSSKELCCGTHVTNTKELSCFCIVN 782

Query: 713 ESSIRAGIRRIEAITGQRARSHLM 736
                       A+ GQ A + L 
Sbjct: 783 LKQTNRARFAFTAVAGQAAENVLK 806


>gi|195441674|ref|XP_002068628.1| GK20581 [Drosophila willistoni]
 gi|194164713|gb|EDW79614.1| GK20581 [Drosophila willistoni]
          Length = 1006

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/967 (23%), Positives = 399/967 (41%), Gaps = 121/967 (12%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR TF+++F   + H+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V
Sbjct: 13  TAREIRKTFIDYFTISHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRV 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHNDL  VG+   HHTFFEMLGN+SF  YFK  A  +A +LL   +++D
Sbjct: 73  VNSQKCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFRDYFKREACSMALELLRGPYNID 132

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            RRLY+T +  D+        E F++W+ + G  + +I+     DNFW M  TGPCGPC+
Sbjct: 133 TRRLYVTYFAGDKVLGIPADLECFEIWRSL-GFPSSRILPFGCRDNFWEMGTTGPCGPCT 191

Query: 174 EIFFDQGEC---IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI  D       +       +       E+WNLVF+Q+ + +      LP   +DTGMG 
Sbjct: 192 EIHIDHQPELASVDERAKLVNAGRSDLTELWNLVFIQYNRHSDGSITQLPSHHVDTGMGF 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------IVNHRVIVDHLRSSS 283
           ER+  +LQ K++NYD DLF  +  +  Q++       +         ++R++ DH R  +
Sbjct: 252 ERLTAILQNKSSNYDTDLFTPIFDSIHQLSRAPAYTGSFQKDAVLDTSYRILADHARMIT 311

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
             +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYPE+   
Sbjct: 312 TCLADGMLPD---QNQKLRRVLRKALNLSEHVFAQENLLSRLVPIVVETLGEAYPEMSIK 368

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-------------------------- 377
           +  + E +  E + +    +        VL+                             
Sbjct: 369 QSDVIELINHEHDVYKNLRESSSKAFAEVLTEFPKLDDIDLMECPGFVPAYREFQVQRSK 428

Query: 378 -KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
             +  + GD  +KL DT+GL  +     L        D+  +   +   ++R +     +
Sbjct: 429 FNNNTIPGDFLYKLTDTYGLTEESF-VKLAELENMNCDLERYRAEVAMAKTRMKKGRENV 487

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
                +      + +   TQ +       +    +      Q         + + V  ++
Sbjct: 488 AHTDDDDSIADAQVQL--TQRL----SISTDNSPKYNYHYDQTNESYEFPQLKTRVLGLL 541

Query: 497 QQGEIVEE---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
              + V           + +V + + FY E+GGQ  D G  +            +     
Sbjct: 542 LNAKEVNSIGHLKQSDTISIVTEASNFYYESGGQEEDKGHLLVRSKEEDSKKQLQVESVK 601

Query: 554 FVHHA---IVERGILRT------------EMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +++    I   G   T               + L ++ ++R+  + +H+ATHLL+ A+ 
Sbjct: 602 HLNNCVVHICRLGPSETEPTQSEEFQLSLGDEVELLVNAEHRQLNTCHHTATHLLNAAIR 661

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPI-TSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            +      Q  S +T +  + ++          +++ IED +N +I   +PV    +N  
Sbjct: 662 CLFHKVTYQVSSSVTSEQCKLELAVLGKRLQKTDVELIEDLINRLICLGVPVEVDQLNAA 721

Query: 658 DAIASGAAALLG-TKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +      ++    Y ++ +R+V V  ++  + S  LC GTHV++T E+    IV+   
Sbjct: 722 QVLQQNDITMVPGEVYPEQGLRLVQVASDELKLLSKELCCGTHVTNTRELSCFCIVNLKQ 781

Query: 716 IRAGIRRIEAITGQRARSHLMG---------------QDEKLKSLAS---------FLKV 751
                    A+ GQ A   L                 Q +KL +             L  
Sbjct: 782 TNRARFAFTAVAGQAAEHVLKTAALLRHRVDVLAEQFQKDKLTNATEVELQTIRHNMLHT 841

Query: 752 SQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHIISE 803
                     + + R+ E+ +  ++      K  +++ + +L   K  D + F+ H I+ 
Sbjct: 842 DIKLPYAFKMDTLERINEMLKRLKETSRTTLKEFVEVEMRNLIMEKPLDTHPFILHYITS 901

Query: 804 VDSKELKSVMDAL----QKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARL 858
                  ++++ +      K+ +   +LV    +        V +  L   FNA      
Sbjct: 902 S------ALVEEIPLQRATKLCTDRPILVVSMCDGYVKARCCVPQSCLTKDFNATTWLSS 955

Query: 859 SAKVLGG 865
            A    G
Sbjct: 956 FAVTFKG 962


>gi|254173402|ref|ZP_04880075.1| alanyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214032811|gb|EEB73640.1| alanyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 913

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 220/964 (22%), Positives = 391/964 (40%), Gaps = 179/964 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVYQAV 61
            +  +R  FL FF+K+GH  +    ++P     ++   + ++ F+    +G+  P    +
Sbjct: 58  TLDEMREKFLSFFEKHGHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++  TK
Sbjct: 118 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +                                 IT  +N W+    G  GP  E+ 
Sbjct: 174 ELKMKPED-----------------------------ITFKENPWAGG--GNAGPAFEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------------QERFILPKMSI 224
           +                  R +E+  LVFMQ+++  +                 +    +
Sbjct: 203 Y------------------RGLEVATLVFMQYKKAPENADPSQVVEIKGDYYVPMETKVV 244

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHL-------------------------IQASEQV 259
           DTG GLER+  +       YD  L   +                         +   E +
Sbjct: 245 DTGYGLERLVWMSHGTPTAYDAVLGYVIEPLKKMAGVEKIDERILMENSRLAGMFDIEDM 304

Query: 260 TGMKYEGNNIVN------------------HRVIVDHLRSSSFLIADGILPANEGRGYVL 301
             ++Y    +                       I DH ++ +F++ADG++P+N   GY+ 
Sbjct: 305 GDLRYLREQVAKRVGISVEELEKAIRPYELIYAIADHTKALTFMLADGVIPSNVKAGYLA 364

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++R+++ + R LG   PL   ++     E+   +PE  + + +I + +  E++R+ +T
Sbjct: 365 RLLIRKSIRHLRELGLEVPL-AEIVAMHIKELSPTFPEFKEMEDVILDIINVEEKRYHET 423

Query: 362 LDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L RG  L+   ++ L K  I  L  +     Y++HGL  +I+ ++    G+      +F 
Sbjct: 424 LKRGSDLVRREIAKLKKRGINELPLEKLILFYESHGLTPEIVAEVAQKEGIKVEIPDNFY 483

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +Q  +    + G        + F L +    T+ + Y+     +F  E  KV+   
Sbjct: 484 TLVAKQAEKTEKKTAGEY-----VVDFELVKDLPDTRTLYYEDPFMKEFDAEVVKVIDD- 537

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                                            VV +QT FY E GGQ  DTG    +G 
Sbjct: 538 --------------------------------WVVLNQTAFYPEGGGQPYDTGTLEVNGE 565

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++T+VQK  +   + H +    + +  + +   +D+  R Q   +H+ TH+L  AL  
Sbjct: 566 EVKVTNVQKVGK--VILHRVERPELFKPGVKVHGKLDWDRRIQHMRHHTGTHVLMGALVR 623

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +  D  R D++H K IT  EL+ IE   N ++ +N  V    + R +A
Sbjct: 624 VLGKHVWQAGSQLHTDWARLDISHYKRITEEELREIERLANRVVMENRKVTWEWLPRTEA 683

Query: 660 IASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L          +RV+ +E  D        CGGTH+ +TG I  + I+    I+
Sbjct: 684 EMKYGFRLYQGGVVPGRVIRVLKIEDWD-----VQACGGTHLPNTGLIGPIKILRTERIQ 738

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G+ RI    G+ A   +   +  LK  A   +V    V    E  + E+++ +    K 
Sbjct: 739 DGVERIIFAAGEAAIDWMQETERLLKKTAEIFRVPPEKVPETAERFFNEWKEARKEVEKL 798

Query: 778 KLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L        +    K+ D+ F+  ++      +L+   + L+K+    +++L+    
Sbjct: 799 RKELAKLLVYELENRVEKVGDIEFIGAVVEGT-MDDLREAANRLRKE--KRVVVLISREG 855

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
                 ++ V + L     A +LA++   V GGGG GGR  +AQ    N  KA++AI  V
Sbjct: 856 ----HFVVAVGDGL--DLKAGELAKIITSVAGGGG-GGRKELAQGRIKNPLKAEEAIEEV 908

Query: 893 ASFL 896
              L
Sbjct: 909 KKRL 912


>gi|240102368|ref|YP_002958676.1| alanyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|239909921|gb|ACS32812.1| Alanyl-tRNA synthetase (alaS) [Thermococcus gammatolerans EJ3]
          Length = 913

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 217/962 (22%), Positives = 387/962 (40%), Gaps = 175/962 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVYQAV 61
            +  +R  FL FF+K+GH  +    ++P     ++   + ++ F+    +G+  P    +
Sbjct: 58  TLDEMREKFLSFFEKHGHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++  TK
Sbjct: 118 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +                                 IT  +N W+    G  GP  E+ 
Sbjct: 174 ELKMKPED-----------------------------ITFKENPWAGG--GNAGPAFEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------------QERFILPKMSI 224
           +                  R +E+  LVFMQ+++  +                 +    +
Sbjct: 203 Y------------------RGLEVATLVFMQYKKAPENADPSQVVEIKGDYYVPMETKVV 244

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHL-------------------------IQASEQV 259
           DTG GLER+  +       YD  L   +                         +   E +
Sbjct: 245 DTGYGLERLVWMSHGTPTAYDAVLGYVIEPLKKMAGVEKIDERILMENSRLAGMFDIEDM 304

Query: 260 TGMKYEGNNIVN------------------HRVIVDHLRSSSFLIADGILPANEGRGYVL 301
             ++Y    +                       I DH ++ +F++ADG++P+N   GY+ 
Sbjct: 305 GDLRYLREQVAKRVGITVEELEKAVRPYELIYAIADHTKALTFMLADGVIPSNVKAGYLA 364

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++R+++ + R LG   PL   ++     E+   +PE  + + +I + +  E++R+ +T
Sbjct: 365 RLLIRKSIRHLRELGLEVPL-AEIVAMHIKELSPTFPEFKEMEDVILDIINVEEKRYHET 423

Query: 362 LDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L RG  L+   ++ L K  I  L  +     Y++HGL  +I+ ++    G+      +F 
Sbjct: 424 LKRGSDLVRREIAKLKKKGINELPLEKLILFYESHGLTPEIVAEVAQKEGIKVEIPDNFY 483

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +Q  +    ++         + F L +    T+ + Y+     +F  E  KV+   
Sbjct: 484 TLVAKQAEKTEKKTVAEY-----VVDFELVKDLPETRTLYYEDPFMKEFDAEVVKVIDD- 537

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                                            VV +QT FY E GGQ  DTG    DG 
Sbjct: 538 --------------------------------WVVLNQTAFYPEGGGQPYDTGTLEVDGE 565

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++T+VQK  +   + H + +  + +    +   +D+  R Q   +H+ TH+L  AL  
Sbjct: 566 EVRVTNVQKVGK--VILHRVDKPELFKKGAKVHGKLDWDRRIQHMRHHTGTHVLMGALVR 623

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +  D  R D++H K IT  EL+ IE   N ++ +N  V    + R +A
Sbjct: 624 VLGKHVWQAGSQLHTDWARLDISHYKRITEEELREIERLANRVVMENRKVTWEWLPRTEA 683

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                  L        V   ++            CGGTH+ +TG I  + I+    I+ G
Sbjct: 684 EMKYGFRLYQ---GGVVPGRTIRVVKIEDWDVQACGGTHLPNTGLIGPIKILRTERIQDG 740

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           + RI    G+ A   +   +  LK  A   +V    V    E  + E+++ +    K + 
Sbjct: 741 VERIIFAAGEAAIDWMQETERLLKKTAEIFRVPPEKVPETAERFFNEWKEARKEVEKLRK 800

Query: 780 QLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L        +    K+ D+ F+  ++      +L+   + L+K+    +++L+      
Sbjct: 801 ELAKLLVYELENKVEKVGDIEFIGAVVEGT-MNDLREAANRLRKE--KRVVVLISREG-- 855

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
               ++ V + L     A +LA++   V GGGG GGR  +AQ    N  KA++AI  V  
Sbjct: 856 --HFVVAVGDGL--DLKAGELAKIITSVAGGGG-GGRKELAQGRIKNPLKAEEAIEEVKR 910

Query: 895 FL 896
            L
Sbjct: 911 RL 912


>gi|268531970|ref|XP_002631113.1| C. briggsae CBR-ARS-1 protein [Caenorhabditis briggsae]
          Length = 796

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/782 (28%), Positives = 369/782 (47%), Gaps = 58/782 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
            +R +F +FFQ   HE++ S+S+IP  ND +L+FTN+GM  FK++     +P  + V  +
Sbjct: 26  ELRKSFFDFFQSKKHEIVKSASVIPLENDGSLLFTNAGMNQFKSLILSSTEP--RRVANI 83

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF-KERAIQLAWDLLTKEFDLDQR 123
           QKC+RAGGKHNDLD+VG+   H TFFEM+GN+SF   F KE A + AWD L +   +D  
Sbjct: 84  QKCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKEEACKFAWDYLVEVLGIDSE 143

Query: 124 RLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RLY++ +         ED E  ++WK   G+ + +I+     +NFW M   GPCGPC+EI
Sbjct: 144 RLYVSYFGGIEKLGLPEDRECKEIWKN-IGVPSHRILPFVA-ENFWEMGAAGPCGPCTEI 201

Query: 176 FFDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
            +D+     GG   SS     +  +EIWN+VFM   + +  + + L +  IDTGMG ER+
Sbjct: 202 HYDR----IGGRDASSLVNIDDSVVEIWNIVFMSNVRDSSGKIYNLGRNHIDTGMGFERL 257

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYE----GNNIVNHRVIVDHLRSSSFLIA 287
            +V+Q K +N+D D+F  ++     +T    KY            R++ DH+R+S+  I+
Sbjct: 258 LSVVQNKNSNFDTDVFIPILAKISSLTKKNLKYNGSVSSQEDAVFRLVADHVRASTIAIS 317

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG +P   G G+++R++MRR+       LG     +  L+P + + + + Y E+ ++   
Sbjct: 318 DGAIPDGTGNGFIVRKMMRRSFLQGNSKLGIDRFGLSDLVPTVISTLKNVYSEVEKSSDK 377

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           I    + E+ +F KT+D+   + D V ++  K   ++G  AF L++T+GLPL +  ++  
Sbjct: 378 IINIFKEEETQFWKTVDKAKKMFD-VGANENKSSTISGRKAFNLFETYGLPLSVTIEMAR 436

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G   +D   F +   E +  ++  S              +  K   T           
Sbjct: 437 NLG-KEVDEKEFERCQLEAQKLSQKASQFK---------LPVFAKDFPT----------- 475

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
               +++     +      + V + +  + Q  E V      +K  VV ++  FYAE GG
Sbjct: 476 -HSDKEKYSYSFENGRYAFSKVPTTILQVYQNQEKVVVLKENEKGFVVLERCQFYAEQGG 534

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSI 585
           Q  D G  + DG  +   +  KK +   V          ++ ++ +   +D + R  +  
Sbjct: 535 QKSDIGKLLADGRNVFEVESAKKLDNGSVTVLFGRALEPIQKDLRVEQQLDEKRREGVMK 594

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT------HSKPITSAELKSIEDNV 639
            HSATHLL+ AL    G    Q GS +  + LRFD +           T A         
Sbjct: 595 AHSATHLLNWALQR-SGLGNGQKGSSVDCNRLRFDYSTGDDSLDKSQRTEALKHLEHILN 653

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I+   L  V      E        + +         V  V    G   S   C GTHV
Sbjct: 654 EFIMKGGLTSVIETTLEEAKKIKNLQSDVKEDRIGDSSVRVVTLGSGVNVSVECCSGTHV 713

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
                I  + I+S+ S+   +RRI A+TG+ A+      ++  + L+S     +  ++ +
Sbjct: 714 HDVSIIEDVAIMSDKSMGQNLRRIVAVTGEEAKKCREYAEKVFEELSSTEFKERNKILKK 773

Query: 760 VE 761
           ++
Sbjct: 774 ID 775


>gi|153810792|ref|ZP_01963460.1| hypothetical protein RUMOBE_01176 [Ruminococcus obeum ATCC 29174]
 gi|149833188|gb|EDM88270.1| hypothetical protein RUMOBE_01176 [Ruminococcus obeum ATCC 29174]
          Length = 683

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 266/711 (37%), Positives = 384/711 (54%), Gaps = 41/711 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +E+WN VF QFE         L + +IDTGMGLER+A V+Q+  + +D+D    L     
Sbjct: 1   MEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVDSIFDVDTICALRNLVC 60

Query: 258 QVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
           ++ G +Y     + V+ R+I DH+RS++F+I+DGI+P NEGRGYVLRR++RRA  + RLL
Sbjct: 61  EIAGKEYGKNYQDDVSIRLITDHIRSATFMISDGIMPTNEGRGYVLRRLIRRAARHGRLL 120

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS- 374
           G     +  L   +     + YPEL + K  I + L +E+ +F KT+D+GL +L  +   
Sbjct: 121 GIEGSFLAKLSAEVINGSKAGYPELEEKKEFIFKVLTNEENQFNKTIDQGLRILGDMEEE 180

Query: 375 -HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                ++ L+G+ AFKLYDT+G PLD+ ++IL  +G  GID   F +A+EEQR +AR   
Sbjct: 181 IKAAGEKTLSGENAFKLYDTYGFPLDLTKEILEEKGY-GIDEEGFQKAMEEQRVKARTAR 239

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                   +   +   +    T+F GYD L                          S + 
Sbjct: 240 EVTNYMGADATVYDEIDVNVTTKFEGYDHLTYD-----------------------SEIT 276

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
            +  + EIV   V GQK  V   +TPFYA  GGQ GD G       +  + D  K   G 
Sbjct: 277 VLTTEKEIVTSLVEGQKGTVFVKETPFYATMGGQEGDCGVIETANGKFVVEDTIKLRGGK 336

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           F H   +E G+L T  ++ L ++ Q RR    NHSATHLL  AL T+LGSHV Q GS +T
Sbjct: 337 FGHVGRMESGMLSTGETVTLKVNEQARRDTEKNHSATHLLQKALKTVLGSHVEQKGSLVT 396

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
           PD LRFD  H + +T  E+   E  VN  I   LPVVT +M+ E+A  SGA AL G KY+
Sbjct: 397 PDRLRFDFAHFQAMTPEEIAQTETLVNKEIQAALPVVTDVMDIEEAKKSGAMALFGEKYD 456

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
            +VRVVS+     G  S  LCGGTHV +T  IML  IVSE+ I AG+RRIEA+TG     
Sbjct: 457 QKVRVVSM-----GDFSKELCGGTHVKNTSSIMLFKIVSEAGIAAGVRRIEALTGNGVIE 511

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SC 788
           +   Q+  L+ +A  LK     +  ++  +  E + LQ  +   K +L    L       
Sbjct: 512 YYKKQETMLQEVAKALKAQPAEITEKITHLQAEVKSLQSENESLKSKLAQGSLGDVMNQI 571

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
             +  V  ++  +  VD   L+ + D L++KI  G+++L  +    K ++L + T+    
Sbjct: 572 VDVKGVKLLAAKVEGVDMNGLRDLGDQLKEKIGEGVVVLAAV-NGGKVNLLAMATDAAQK 630

Query: 849 -RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              +A +L +  A ++GGGG GGRP+MAQ+GG N  KAD+A+   A  L++
Sbjct: 631 AGAHAGNLIKGVAAIVGGGG-GGRPNMAQAGGKNPEKADEAVKAAAGILEQ 680


>gi|308509732|ref|XP_003117049.1| CRE-AARS-1 protein [Caenorhabditis remanei]
 gi|308241963|gb|EFO85915.1| CRE-AARS-1 protein [Caenorhabditis remanei]
          Length = 810

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/793 (28%), Positives = 367/793 (46%), Gaps = 50/793 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
              +R +F EFF+   HE+L S+S+IP  ND +L+FTN+GM  FK +     +P  + V 
Sbjct: 13  SRELRKSFFEFFKSKNHEILKSASVIPAENDSSLLFTNAGMNQFKPLILSSSEP--KRVA 70

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF-KERAIQLAWDLLTKEFDLD 121
            +QKC+RAGGKHNDLD+VG+   H TFFEM+GN+SF   F K+ A Q AWD L K   +D
Sbjct: 71  NIQKCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKQEACQFAWDYLVKTLSID 130

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY++ +         ED E  ++WK+  G+ +D+I+     +NFW M   GPCGPC+
Sbjct: 131 SDRLYVSYFGGIERLGLPEDRECREIWKR-IGIPSDRILPFVA-ENFWEMGSAGPCGPCT 188

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+               +  +EIWN+VFM   + +      L K  IDTGMG ER+
Sbjct: 189 EIHYDRI--GGRNASSLVNIDDSVVEIWNIVFMSNIRDSSGHIHNLGKNHIDTGMGFERL 246

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN------NIVNHRVIVDHLRSSSFLIA 287
            +V+Q + +N+D D F  ++     +T  K + N           R++ DH+R+++  I+
Sbjct: 247 LSVVQNRNSNFDTDAFTPILDKITSLTKNKLKYNGTLSSREDAVFRLVADHVRAATVAIS 306

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEM----------GSA 336
           DG +P   G G+++R++MRR+       LG     +  L+P + + M             
Sbjct: 307 DGAIPDGTGSGFIVRKMMRRSFLQGNSKLGIERFGLSDLVPVVISTMVPFLVRITSDKEV 366

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           YPE+ ++   I +T + E+ +F KT+D+   + D  +++  K  +++G  AF L++THGL
Sbjct: 367 YPEIEKSSNEIIKTFKDEETQFWKTVDKAKKMFD-GVANENKSPVISGRKAFNLFETHGL 425

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL-GLGSGTTEKIWFSLKEKYGAT 455
           PL +  ++    G   +D   F +   E +  ++  S   L    ++    +  +KY   
Sbjct: 426 PLSVTVEMARNIG-KEVDEKEFERCQLEAQKLSQKASQLKLPVSASDFPTHTDNDKYS-- 482

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
               Y    G         +            V + +  + +  E        +K  VV 
Sbjct: 483 ----YTYKNGRYGKSISFTLTNFNYLFLEFPKVQTRILEVYKNQEKANCLNENEKGFVVL 538

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG-ILRTEMSLVLT 574
           +   FY E GGQ  DTG  + D   +   +  KK E   V          ++ ++ +   
Sbjct: 539 ENCQFYGEQGGQTSDTGKLLIDKKEIFEVESAKKLENGAVTVLFGRALQPIQRDLRVEQQ 598

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK- 633
           +D + R  +   HSATHLL+ AL    G    Q GS +  + LRFD +    +   E + 
Sbjct: 599 LDEKKREGVMKAHSATHLLNWALQK-SGLGCGQKGSSVDCNRLRFDYSTKDDVMEKEQRS 657

Query: 634 ----SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-LLGTKYNDRVRVVSVEYEDGGV 688
                 E+ +N+ I      +      E+A         +         V  V    G  
Sbjct: 658 EVLKQGEERMNEFIRHGGETIILETTIEEAKKIENLQSDVKEDRIGNSTVRVVSLGIGRD 717

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C GTHV     I  + I+S+ S+   +RRI A+TG+ A+      +   K L S 
Sbjct: 718 VPVECCSGTHVHDVKVIEDIAIMSDKSMGQRLRRIIAVTGEEAQKCREYAETSYKDLKSK 777

Query: 749 LKVSQGNVVGRVE 761
               +  +  +++
Sbjct: 778 EPKERSKIAKKID 790


>gi|304314036|ref|YP_003849183.1| alanyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587495|gb|ADL57870.1| alanyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 898

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/952 (23%), Positives = 381/952 (40%), Gaps = 175/952 (18%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTT 63
            I+  F+EFF + GHE +    ++       +    + +  F+   T G  KP    +  
Sbjct: 58  EIQDEFIEFFAERGHEPIRRYPVLAKRWRDDVFLVGASIYNFQPWVTSGLVKPPANPLVV 117

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEF 118
            Q  +R     ND+DNVGRT RH T F M G+ +F       Y++E  I+   + LT   
Sbjct: 118 AQPSIRL----NDVDNVGRTGRHLTCFTMGGHHAFNSEDNTVYWEEETIKYCHEFLT-HI 172

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            +D                                IT  +++W     G  GPC E+   
Sbjct: 173 GIDP-----------------------------FEITFIESWWQGG--GNEGPCYEV--- 198

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                            R +E+  LVF+Q+       R  +P   +DTG GLER A + Q
Sbjct: 199 ---------------CVRGVELATLVFIQYRTLPDGGREEIPLKIVDTGYGLERFAWISQ 243

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN------------------------------- 267
                YD   F  +I+   ++TG++                                   
Sbjct: 244 GTPTAYDA-CFGPVIEKLIELTGVEVNEEILAENARVAGMMDIETYADLRELRKRVADKL 302

Query: 268 ------------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                        + +   I DH R  +F++ADG++P+N   GY+ R I+RR +   + L
Sbjct: 303 GISATELERAAAPMESIYAIADHTRCLAFMLADGVIPSNVKEGYLARLIIRRTLRLMKEL 362

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G  E L   ++      +   YPE+ +    I   +  E+ R+ KT+ RG  +++  + +
Sbjct: 363 GMRESLK-DIMNIQVEFLEGHYPEIREHHEHILSIIDLEEHRYAKTVTRGRRIVEKTIKY 421

Query: 376 LGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           L KD    +  ++  KLYD+HG+P + +++I    G +     +F               
Sbjct: 422 LRKDNKSEMPLEILIKLYDSHGIPPETIKEIAEESGFSVKIPDNFYTL-----------V 470

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
             +    TE     L   Y  T+ + Y+   G +F                     + V 
Sbjct: 471 AEMNEAETEAPEEDLHLDYPQTELLFYEQPDGLEF--------------------EASVL 510

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
            + + G             V+ D+T FY E GGQ  DTG    DG R++I   +K     
Sbjct: 511 GVYEDG-------------VILDRTLFYPEGGGQPSDTGYIESDGCRIRIKHAEKIGN-- 555

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            V H   +   L+   ++   ID   R QL+ NH+ATHL+  A   +LG H+ Q G+   
Sbjct: 556 VVLHRTDDEICLKPGETVRGRIDSDRRLQLTRNHTATHLIVAAARRVLGDHIWQAGAQKG 615

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TK 671
               R D++H + IT  EL  IE   N+ + +N+P+  R M+R+ A       L      
Sbjct: 616 VKSSRIDLSHYRRITQEELDEIERLANEYVMRNIPLDVRWMDRDIAEKRYGFILYQGGVV 675

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               +RVV +   D        C GTHV  TG+I L+ I     I+ G+ RIE   G  A
Sbjct: 676 PGSMIRVVEIPGVD-----VQACAGTHVKRTGDIGLIMINRTERIQDGVERIEFSAGASA 730

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS---- 787
              +    + L+  A   KV+   +    E  + E++ L+   ++ K ++    +     
Sbjct: 731 IELMQKNRDILRESADVFKVTPSQLPRTSERFFTEWKALRNEVSRLKEEMASLKILEVRD 790

Query: 788 -CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
               +  +  +   +   D  E+K++   L +   +  ++L          ++   ++D 
Sbjct: 791 RVEDLNGLRVIIDTVE-ADMDEMKNMALELTE--SADAVILANSEG----QIVGAASDDA 843

Query: 847 LDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + R     ++   +A+VLGGGG GG+PH+AQ  G   +K  +A+    S L+
Sbjct: 844 VKRGLRINEVIASAARVLGGGG-GGKPHLAQGAGKGKDKIHEALEEARSSLE 894


>gi|223986202|ref|ZP_03636221.1| hypothetical protein HOLDEFILI_03531 [Holdemania filiformis DSM
           12042]
 gi|223961839|gb|EEF66332.1| hypothetical protein HOLDEFILI_03531 [Holdemania filiformis DSM
           12042]
          Length = 515

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 192/482 (39%), Positives = 283/482 (58%), Gaps = 22/482 (4%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + +R  FL++FQ  GH + P +SLIP NDPTL++ N+G+   K  F G EKP  
Sbjct: 43  MKELTGNQVRQMFLDYFQSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEKPAC 102

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 103 NRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKADAIPFAWEFLTSPE 158

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ +LY+TVY +DEEA+++W ++ G+    I++  T DNFW + E GP GP SEIF
Sbjct: 159 WIGFDKNKLYVTVYPDDEEAYRIWTEVCGVDPSHILK--TADNFWEIGE-GPGGPDSEIF 215

Query: 177 FDQGECIPGGL-----PGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           +D+GE                E +RYIE+WN+VF QF+ +     +    LP  +IDTGM
Sbjct: 216 YDRGEKYDPEGLGEKLFFEEMENDRYIEVWNVVFSQFDCRPGTDRKLYKELPHKNIDTGM 275

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+ +++QE   N+D DLF  +I+A+E++    YEG   + +RVI DH+R+ +F ++D
Sbjct: 276 GLERLVSIIQEGETNFDTDLFLPIIRAAEKLAKHPYEGEYKMAYRVIADHIRTVTFALSD 335

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G + +NEGRGYVLRR++RRA+ Y   LG     M  L+  +   M   YP L++    + 
Sbjct: 336 GAMFSNEGRGYVLRRVLRRAVRYGIKLGINGAFMYKLVDVVADNMKDFYPYLLEKTEFVA 395

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + +++E+E F  TL  G  LL+  L+     + L+G+V FKLYDT+G PL++ ++I   R
Sbjct: 396 KLVKNEEEAFHSTLANGEKLLNEELAKAEAAKTLSGEVVFKLYDTYGFPLELTKEIAGER 455

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   ID   F   + +QR RARA      S  ++     L +     +F GY+ +  +  
Sbjct: 456 GYT-IDEEGFEAQMAKQRERARAAREDAQSMASQSA--DLMDFTAPFEFTGYETMSDTGT 512

Query: 469 MK 470
           + 
Sbjct: 513 IT 514


>gi|20089092|ref|NP_615167.1| alanyl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|22096190|sp|Q8TU79|SYA_METAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|19913955|gb|AAM03647.1| alanyl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 925

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/965 (23%), Positives = 374/965 (38%), Gaps = 172/965 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N+S +R  +L FF+  GH  L    ++      +  T + +  F+   T GQ  P    +
Sbjct: 59  NISEMREYYLSFFEARGHTRLDRYPVVARWRDDIYLTIASIADFQPFVTSGQVPPPANPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+KE  ++L  +LLT 
Sbjct: 119 TISQPCIRL----NDLDSVGRSGRHLTNFEMMAHHAFNKRGNEIYWKEHTLELCDELLTS 174

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D                                +T  +  W+    G  GPC E+ 
Sbjct: 175 -LKVDP-----------------------------FAVTYKEEPWAGG--GNAGPCVEVI 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMG 229
                                +E+  LVFM  +   K +          +    +DTG G
Sbjct: 203 V------------------HGLELATLVFMDLKTDKKGDILIKGETYSKMDNYIVDTGYG 244

Query: 230 LERMATVLQEKTNNYD------IDLFKHLIQASEQVTGMKYEGNNIVNHRV--------- 274
           LER     +     YD      ++    L     ++   +Y      N R+         
Sbjct: 245 LERFVWASKGSPTIYDALFPGIVNELMGLAGLEHELNNTEYSNILAQNARLAGFMDVSEK 304

Query: 275 ---------------------------------IVDHLRSSSFLIADGILPANEGRGYVL 301
                                            I DH R  +F++ DGI+P+N   GY+ 
Sbjct: 305 ANLLELRKKVASSIGMTVDKLSVIMEPVEKVYAITDHTRCLTFMLGDGIIPSNVKAGYLA 364

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++RR +   + L    PL   ++      M   YPE      +I++ L SE+E+F  T
Sbjct: 365 RLVLRRTLRMMKDLDIRTPLS-EIVDMHIRNM-PEYPEFRANFPVIQDILESEEEKFNIT 422

Query: 362 LDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           ++RG  ++    SH  K  E +      +LYD+HG+P ++ +++    G+      +F  
Sbjct: 423 MERGRRIIQKSASHFKKTGEKIPLSQLTELYDSHGIPPEMAKEVAADIGVGVEFPDNFYS 482

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + E  ++A      +        +    +    T+   YD     +F            
Sbjct: 483 IIGELHNKAEEKEEEVIP------FAERLKHLPKTKRRFYDEPTRLEF------------ 524

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    ++V  +                 +V D T FYAE GGQ  D G      I 
Sbjct: 525 --------EAVVLDVFDN-------------HIVLDNTFFYAEGGGQPADIGTISVGDIV 563

Query: 541 LQITDVQKKAEGIFVH-HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++ DVQ     I            +     +   +D + R  L+ +H+ATH+++ A   
Sbjct: 564 YKVVDVQVYEGVIVHTVDIPDGELEITKGDIITGKVDERRRMTLARHHTATHIVNDAARK 623

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H+ Q G+    D  R D++H K I+  ELK IE   N  + +N  V+T  M R +A
Sbjct: 624 VLGKHIWQAGAQKFEDHSRLDLSHYKHISPEELKQIELLANRTVMENKRVITEWMPRIEA 683

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                  L         ++  V+  D        CGGTH  STG I  + I+    I+ G
Sbjct: 684 EQVYGFGLYQGGVPPGEKIRIVKVGDD----VEACGGTHCLSTGVIGPIKILKTERIQDG 739

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           + R+E   G  A   +   +  L   A  L V   ++   VE  + E++ L+  + + K 
Sbjct: 740 VERVEFAAGIAAVRAMQKMESLLVDSAKTLSVPPEHLPVSVERFFGEWKDLKKENERLKE 799

Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            L    +        ++A +  +S  +   DS EL+ +   L K+    ++ L+    E 
Sbjct: 800 DLARSRVYRMLGDASELAGLRVVSEQVPGADSLELQKIATELLKQ--ENVVTLLASDLEG 857

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
              ++  V E  ++   NA +L R  +K++GGGG GG+P +A  GG +  +   A++   
Sbjct: 858 -VKLVASVGEKAIECGINAGNLVREMSKIVGGGG-GGKPALAMGGGTDPTRIQDALSRGL 915

Query: 894 SFLKK 898
             +K+
Sbjct: 916 ELVKE 920


>gi|309365022|emb|CAP23713.2| CBR-AARS-1 protein [Caenorhabditis briggsae AF16]
          Length = 807

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/801 (28%), Positives = 370/801 (46%), Gaps = 74/801 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
            +R +F +FFQ   HE++ S+S+IP  ND +L+FTN+GM  FK++     +P  + V  +
Sbjct: 26  ELRKSFFDFFQSKKHEIVKSASVIPLENDGSLLFTNAGMNQFKSLILSSTEP--RRVANI 83

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF-KERAIQLAWDLLTKEFDLDQR 123
           QKC+RAGGKHNDLD+VG+   H TFFEM+GN+SF   F KE A + AWD L +   +D  
Sbjct: 84  QKCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKEEACKFAWDYLVEVLGIDSE 143

Query: 124 RLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RLY++ +         ED E  ++WK   G+ + +I+     +NFW M   GPCGPC+EI
Sbjct: 144 RLYVSYFGGIEKLGLPEDRECKEIWKN-IGVPSHRILPFVA-ENFWEMGAAGPCGPCTEI 201

Query: 176 FFDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
            +D+     GG   SS     +  +EIWN+VFM   + +  + + L +  IDTGMG ER+
Sbjct: 202 HYDR----IGGRDASSLVNIDDSVVEIWNIVFMSNVRDSSGKIYNLGRNHIDTGMGFERL 257

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYE----GNNIVNHRVIVDHLRSSSFLIA 287
            +V+Q K +N+D D+F  ++     +T    KY            R++ DH+R+S+  I+
Sbjct: 258 LSVVQNKNSNFDTDVFIPILAKISSLTKKNLKYNGSVSSQEDAVFRLVADHVRASTIAIS 317

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEM---GSAYPELIQA 343
           DG +P   G G+++R++MRR+       LG     +  L+P + + +    + Y E+ ++
Sbjct: 318 DGAIPDGTGNGFIVRKMMRRSFLQGNSKLGIDRFGLSDLVPTVISTLVGVKNVYSEVEKS 377

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              I    + E+ +F KT+D+   + D V ++  K   ++G  AF L++T+GLPL +  +
Sbjct: 378 SDKIINIFKEEETQFWKTVDKAKKMFD-VGANENKSSTISGRKAFNLFETYGLPLSVTIE 436

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   +D   F +   E +  ++  S              +  K   T        
Sbjct: 437 MARNLG-KEVDEKEFERCQLEAQKLSQKASQFK---------LPVFAKDFPT-------- 478

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                  +++     +      + V + +  + Q  E V      +K  VV ++  FYAE
Sbjct: 479 ----HSDKEKYSYSFENGRYAFSKVPTTILQVYQNQEKVVVLKENEKGFVVLERCQFYAE 534

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQ 582
            GGQ  D G  + DG  +   +  KK +   V          ++ ++ +   +D + R  
Sbjct: 535 QGGQKSDIGKLLADGRNVFEVESAKKLDNGSVTVLFGRALEPIQKDLRVEQQLDEKRREG 594

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT------HSKPITSAELKSIE 636
           +   HSATHLL+ AL    G    Q GS +  + LRFD +           T A      
Sbjct: 595 VMKAHSATHLLNWALQR-SGLGNGQKGSSVDCNRLRFDYSTGDDSLDKSQRTEALKHLEH 653

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
                I+   L  V      E        + +         V  V    G   S   C G
Sbjct: 654 ILNEFIMKGGLTSVIETTLEEAKKIKNLQSDVKEDRIGDSSVRVVTLGSGVNVSVECCSG 713

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV     I  + I+S+ S+   +RRI A+TG+ A+      ++  + L+S         
Sbjct: 714 THVHDVSIIEDVAIMSDKSMGQNLRRIVAVTGEEAKKCREYAEKVFEELSST-------- 765

Query: 757 VGRVEEIWEEYRKLQLIHAKR 777
                E  E  + L+++    
Sbjct: 766 -----EFKERNKILKVLKRNL 781


>gi|268323634|emb|CBH37222.1| alanyl-tRNA synthetase [uncultured archaeon]
          Length = 919

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 217/959 (22%), Positives = 379/959 (39%), Gaps = 165/959 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +V  IR +FL FF+ +GH  L    ++      +    + +  F+   T G+  P    +
Sbjct: 58  SVEQIRESFLSFFESHGHTRLKRYPVVARWRDDIYLNIASISNFQPFVTAGKVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----------YFKERAIQLA 110
              Q C+R      DL+++G+T RH T FEM+G+ +F             Y+K   ++  
Sbjct: 118 VISQPCIRLE----DLESIGKTGRHLTAFEMMGHHAFNKRGEEREETGEIYWKNDTVRYC 173

Query: 111 WDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + L ++  +D     +T                             +  W     G  G
Sbjct: 174 DEYL-RQLGVDMD--GVTY---------------------------KEAPWVGG--GNAG 201

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS------- 223
           PC E+                      +E+  LVFM  +   + +  I  +         
Sbjct: 202 PCLEVI------------------TSGLELATLVFMDLKLSPRGQIHINGQRYDKMDTYI 243

Query: 224 IDTGMGLERMATVLQEKTNNYDI---DLFKHLIQASEQVTGMKYEGN------------- 267
           +DTG GLER     +     YD    D+ K LI A+  V  ++                 
Sbjct: 244 VDTGYGLERFVWASKGSPTVYDAIFPDMIKELINAAGIVHPLETHHELIIENARLSGAMS 303

Query: 268 --------------------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
                                I +   + DH +  +F++ADGI+P+N   GY+ R ++RR
Sbjct: 304 RREIAKRFGISPEELKNILGPIESVYAVSDHTKCLAFMLADGIVPSNAKEGYLARLVLRR 363

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           A    + L    PL   L+      + +++PEL ++   I E +  E  R+  TL +G  
Sbjct: 364 AFRILKSLDIAIPLE-ELVLKQIKTLKNSFPELEESVDRIVEIVALEKRRYDDTLLKGGR 422

Query: 368 LLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
           ++  +      K + ++ D    LYDTHGLP + + ++   +G+A     +F   +    
Sbjct: 423 IVKQLAKQSKLKAQKIHLDRLINLYDTHGLPPEFVSEVASTQGVAVDIPENFYSLVASMH 482

Query: 427 -SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
               +     L  G  EK      +   AT  + Y+     +F                 
Sbjct: 483 GEEQKTALEPLLDGLKEKT-----QSIPATLKLYYEEPSAFEF----------------- 520

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               ++V                    V+ D+T F+ E GGQ  DTG          +  
Sbjct: 521 ---EAVVLDTFDD-------------FVILDKTLFFPEGGGQPADTGSLKLKEENRTLKV 564

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
              +     + H I   G +     +   ID + R   + +HSATH++  A   +LGSHV
Sbjct: 565 QDVQEVEGVILHKIENGGGISKGSVVSGHIDRERRIAHTRHHSATHIVVCAARKVLGSHV 624

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q G+       R DVTH K IT AE K IE   N ++ ++  +  R  +RE+A      
Sbjct: 625 WQAGAQKGEKRARIDVTHFKRITDAERKEIELLANRMVMEDKEIQARFEDREEAEQKYKF 684

Query: 666 ALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +          +R+V +            C GTH + TGE+  + I+    I+ GI RI
Sbjct: 685 QIYQGGVPPGKEIRIVRIGE----DEDVQACAGTHCTKTGEVGPIKILRTERIQDGIVRI 740

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           E   G+ A   +  Q+E +K  A+ LKV    +   VE  +EE+++L+  + + + ++  
Sbjct: 741 EYSAGEAAVVAVQAQEELIKVAAATLKVPPEKLPHTVERFFEEWKQLKKENERLRGEIAT 800

Query: 784 EDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             +         ++ V  ++ ++ + D+K++  +   L +    G + L+   + K+ASV
Sbjct: 801 LQIGLLKDHAKDVSGVRVIAEVLPDADTKDMMKIASQLTE---DGFLTLLISERGKRASV 857

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +  V + L    +A +L +   +VL GG GGG+  +AQ GG      ++A+      ++
Sbjct: 858 VSSVPKHLKAEISASELVKRVCEVL-GGSGGGKAEIAQGGGEKVEMVEEAMVAGIKLIQ 915


>gi|21227588|ref|NP_633510.1| alanyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|24418696|sp|Q8PWU0|SYA_METMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|20905972|gb|AAM31182.1| Alanyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 926

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 217/963 (22%), Positives = 374/963 (38%), Gaps = 170/963 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N+S +R  +L FF+  GH  +    ++      +  T + +  F+   T GQ  P    +
Sbjct: 59  NISEMREYYLSFFEARGHTRINRYPVVARWRDDIYLTIASIADFQPFVTSGQVPPPANPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+KE  ++L  +LL  
Sbjct: 119 TISQPCIRL----NDLDSVGRSGRHLTNFEMMAHHAFNRRDNEIYWKEHTLELCDELL-N 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++   L +T                             +  W+    G  GPC E+ 
Sbjct: 174 SLKVNP--LAVTY---------------------------KEEPWAGG--GNAGPCVEVI 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMG 229
                                +E+  LVFM  +   K +  I       +    +DTG G
Sbjct: 203 V------------------HGLELATLVFMDLKTDKKGDIEIKGETYSKMDNYIVDTGYG 244

Query: 230 LERMATVLQEKTNNYD------IDLFKHLIQASEQVTGMKYEGNNIVNHRV--------- 274
           LER     +     YD      ++    L     ++   +Y      N R+         
Sbjct: 245 LERFVWASRGSPTIYDALFPGIVNELMGLAGIEHELNDSEYANILAQNARLAGFMDVSEK 304

Query: 275 ---------------------------------IVDHLRSSSFLIADGILPANEGRGYVL 301
                                            I DH R  +F++ DGI+P+N   GY+ 
Sbjct: 305 ANLMELRKKVASSIGMTVDKLSAIMEPVEKVYAITDHTRCLTFMLGDGIIPSNVKAGYLA 364

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++RR +   + L    PL   ++      M   YP   +   +I++ L SE+E+F  T
Sbjct: 365 RLVLRRTLRMMKDLDIRIPLS-EIVDMHIKNM-PEYPGFRENFPVIQDILESEEEKFNTT 422

Query: 362 LDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           ++RG  ++    SH  K  E +      +LYD+HG+P ++ +++    G+      +F  
Sbjct: 423 MERGRRIIQKSASHFKKTGEKIPLSQLTELYDSHGIPPEMAKEVAAEIGVGVEFPDNFYS 482

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + E  ++A      +        +    +    T+   YD     +F            
Sbjct: 483 IIGELHNKAEEKEEEVNP------YAERLKHLPKTKRRFYDEPTRLEF------------ 524

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    ++V  +                 VV D T FYAE GGQ  D G  + +   
Sbjct: 525 --------EAVVLDVFDN-------------HVVLDNTFFYAEGGGQPADIGTIVAEDTV 563

Query: 541 LQITDVQKKAEGIFVHHAIV-ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++ DVQ     I        +   +     +   +D + R  L+ +H+ATH+++ A   
Sbjct: 564 YRVVDVQVYEGVILHTIENPGKELAITKGELITGKVDEKRRMTLARHHTATHIVNDAARK 623

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H+ Q G+    D  R D++H K I+  E++ IE   N  + +N  VVT  M R +A
Sbjct: 624 VLGKHIWQAGAQKFEDHSRLDLSHYKHISPEEIRQIELLANRTVMENKRVVTEWMPRTEA 683

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                  L         ++  V+  D        CGGTH +STG I  + I+    I+ G
Sbjct: 684 EQVYGFGLYQGGVPPGEKIRIVKVGDD----VEACGGTHCTSTGIIGPIKILKTERIQDG 739

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           + RIE   G  A   +   +  L   +  L V   ++   V+  + E++ L+  + + K 
Sbjct: 740 VERIEFAAGTAAVRAMQKLESLLVDSSKTLSVPPEHLPVSVDRFFGEWKDLKKENERLKE 799

Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L    +        +++ +  ++  +S  DS EL+ +   L K     ++ L+    E 
Sbjct: 800 ELARSRVYRMLGDASEVSGLKVITEQVSGADSLELQKIATELLKT--ENVVALLASDFEG 857

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
              V     + +    NA +L R  +K++GGGG GG+P +A  GG +  +   A+     
Sbjct: 858 VKIVASAGEKAMKCGVNAGNLVREMSKIVGGGG-GGKPALAMGGGTDPTRIQDALTRGLE 916

Query: 895 FLK 897
            +K
Sbjct: 917 LVK 919


>gi|57641502|ref|YP_183980.1| alanyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|68735034|sp|Q5JIL7|SYA_PYRKO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57159826|dbj|BAD85756.1| alanyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 917

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 217/967 (22%), Positives = 390/967 (40%), Gaps = 181/967 (18%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVY 58
            +  +R  FL FF+K+    H  +    ++P     ++   + ++ F+    +G+  P  
Sbjct: 58  TLDEMREKFLSFFEKHESYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLTISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +                                 IT  +N W+    G  GP  
Sbjct: 174 FTKELKMKPED-----------------------------ITFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPK 221
           E+ +                  R +E+  LVFMQ+++                    +  
Sbjct: 203 EVLY------------------RGLEVATLVFMQYKKAPADADPSQVVEIKGDYYVPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHL-------------------------IQAS 256
             +DTG GLER+  +       YD  L   +                         +   
Sbjct: 245 RVVDTGYGLERLVWMSHGTPTAYDAVLGYVIEPLKKMAGVEKIDERILMENSRLAGMFDI 304

Query: 257 EQVTGMKYEGNNIVN------------------HRVIVDHLRSSSFLIADGILPANEGRG 298
           E +  ++Y    +                       I DH ++ +F++ADG++P+N   G
Sbjct: 305 EDMGDLRYLREQVAKRVGISVEELEKAVRPYELIYAIADHTKALTFMLADGVIPSNVKAG 364

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+ R ++R+++ + R LG   PL   ++     E+   +PE  + + +I + +  E++R+
Sbjct: 365 YLARLLIRKSIRHLRELGLEIPL-AEIVAMHIKELSPTFPEFKEMEDVILDIINVEEKRY 423

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL RG  L+   ++ L K  I  L  +     Y++HGL  +I+ ++    G+      
Sbjct: 424 AETLRRGSDLVKREIAKLKKKGINELPLEKLILFYESHGLTPEIVAEVAEKEGIKVNIPD 483

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F   + ++  +               + F L +    T+ + Y+     +F     KV+
Sbjct: 484 NFYTLVAKEAEKQAEK----KEAAEYVVDFELVKDLPDTRTLYYEDPFMKEFDARVLKVI 539

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                                               VV DQT FY E GGQ  DTG    
Sbjct: 540 AD---------------------------------WVVLDQTAFYPEGGGQPYDTGVLEV 566

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G ++++T+VQK  +   + H + +  + +  +++   +D+  R Q   +H+ TH+L  A
Sbjct: 567 NGEKVKVTNVQKVGK--VILHKVEKPELFKEGVTVHGRLDWDRRIQHMRHHTGTHVLMGA 624

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +  D  R D++H K IT  EL+ IE   N ++ +N  V    + R
Sbjct: 625 LVRVLGKHVWQAGSQLHTDWARLDISHYKRITEEELREIERLANRVVMENRKVTWEWLPR 684

Query: 657 EDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +A       L          +RV+ +E  D        CGGTH+ +TG I  + I+   
Sbjct: 685 TEAEMKYGFRLYQGGVVPGRVIRVLKIEDWD-----VQACGGTHLPNTGLIGPIKILRTE 739

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I+ G+ RI    G+ A + +   +  LK  A   +V    V    E  + E+++ +   
Sbjct: 740 RIQDGVERIIFAAGEAAINWMQETERLLKRTAEIFRVPPEKVPETAERFFNEWKEARKEV 799

Query: 775 AKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K + +L             K+ +V F+  ++      +L+   + L+K+  + +++L+ 
Sbjct: 800 EKLRKELAKLLVYELQEKVEKVGNVEFIGAVVEGT-IDDLREAANRLRKE--NRVVVLIS 856

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
                    ++ V + L     A +LA++   V GGGG GGR  +AQ    N  KA++AI
Sbjct: 857 REG----HFVVAVGDGL--DLKAGELAKVITSVAGGGG-GGRKELAQGRIKNPLKAEEAI 909

Query: 890 AGVASFL 896
             V   L
Sbjct: 910 EEVKKML 916


>gi|156543880|ref|XP_001606952.1| PREDICTED: similar to alanyl-tRNA synthetase [Nasonia vitripennis]
          Length = 954

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 240/936 (25%), Positives = 391/936 (41%), Gaps = 120/936 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IRT FLE+F KN H ++ SS ++P NDP++ F N+GM  FK +  G   P    V   QK
Sbjct: 11  IRTEFLEYFAKNNHAIVRSSPVVPLNDPSIPFVNAGMNQFKGVLLGDHSPPAFRVANSQK 70

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R GGKHNDLD VG  + HHTFFEMLGN+SFG YFKE A + AW+LLT+ + + +  LY
Sbjct: 71  CIRVGGKHNDLDIVGNDSYHHTFFEMLGNWSFGDYFKEEACKYAWELLTEIYGIKKDFLY 130

Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T +          D E  ++W K  G+  D I+     DNFW M  TGPCGPC+EI  D
Sbjct: 131 VTYFKGNEKLNLQPDLECKEIWLK-IGVPKDHILPFGIEDNFWEMGPTGPCGPCTEIHID 189

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                       ++  +   E+WN+VF+Q+++        L K  IDTGMG ER+ TVLQ
Sbjct: 190 HTMQSKNQASRVNKGHDDLTELWNVVFVQYQRLQNGRIIPLLKKHIDTGMGFERLVTVLQ 249

Query: 239 EKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLIADG 289
           EK +NYD D+F+ L +A E+ T             +      +R++ DH R  +  +ADG
Sbjct: 250 EKRSNYDTDIFQPLFEAIEKFTHAPKYQGRFGTADKNKIDTGYRILADHARMVTVALADG 309

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LP    +   LRRI+R+A+  +     T  L+  L   +   +G  YPE+ +    I+ 
Sbjct: 310 MLP---DKNQKLRRILRKAIDISEESFKTSQLLSELTNHVAFSLGDVYPEIYKNLNKIQH 366

Query: 350 TLRSEDE-----------RFGKTLDR-----------------GLVLLDGVLSHLGKDEI 381
            ++ E+E            + K ++                  G   L   L    K   
Sbjct: 367 IIQYEEEVMKSARNNAAKNWRKVVENRPELSAITDATLPGLTAGYYELQTFLKSEYKVNS 426

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L GD A+KLYDT+GL  + +   L        D+ +F +A+E+ R R+R  +  L     
Sbjct: 427 LPGDFAYKLYDTYGLNSETIC-KLAEIESIPFDLKTFKEAIEKARERSRHKADKLNDEII 485

Query: 442 EKIWFSLKEKY---GATQFIGYDLLRGSKFMK------------EDRKVLCQKPPIDLTN 486
            +   +L E          + YD     K  +             +  ++ +       +
Sbjct: 486 SEYSLNLLESGNVPKTDDLLKYDYTITEKGYQFPVVKCKIVGMIMNGNLISEPETAFNVD 545

Query: 487 GVSSIVKAIVQQ-GEIVEE---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
              +IV+A V   G IVE      +  +V ++ D+TP Y+ AG Q+ D G      +   
Sbjct: 546 ESQTIVEATVTNSGNIVESSAVVTTNAEVGIILDKTPAYSTAGSQISDKGHIQIKDLLFN 605

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY------QNRRQLSINHSATHLLHHA 596
              V+K  + +      V+      E  L +  +       + R     +H+ATHLL+ +
Sbjct: 606 FEKVRKIRDYVIHIGHFVDWDEANPEHELQVGDECLISIDEKIRLGAMRHHTATHLLNAS 665

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  IL       G  I        ++  +      +    D  +  I     + +  M+ 
Sbjct: 666 LQQILPVVGQHTGIRIVEINSP-ALSSKEACCGTHVHKTGDLEHFCITSLKSLGSVSMSL 724

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +      A        N + R++++E +    +++       V+S  + +L         
Sbjct: 725 KAITGPAARLARLAGDNLKDRILNIENDLKAGNATLKELEFRVNSEKQELLDKKKRT--- 781

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
                R   I                              + ++E + +  R       +
Sbjct: 782 -----RFPYIV-------------------------VQESLEKLELLSKNIRIRDRELTR 811

Query: 777 RKLQLNVEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             ++  ++ L     + + F+ H +    + +++  LK+++    K       +LV +  
Sbjct: 812 NTIEEEIKKLL--DSSSLPFVVHCLQPTNTSLENVSLKNII----KLCPPSTPVLVIVHC 865

Query: 833 EKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGG 867
           + K      V E L  D FNA        +V    G
Sbjct: 866 KSKVKASCFVPEKLQTDVFNAKTWMEEILQVFQSKG 901


>gi|88601358|ref|YP_501536.1| alanyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|121722713|sp|Q2FQD6|SYA_METHJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88186820|gb|ABD39817.1| alanyl-tRNA synthetase [Methanospirillum hungatei JF-1]
          Length = 916

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 221/965 (22%), Positives = 356/965 (36%), Gaps = 179/965 (18%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             V  +R  +L FF+K GH  +    +       +  T + +  F+   T G   P    
Sbjct: 57  KTVDEMREAYLSFFEKQGHTRIDRYPVAARWRDDIYLTIASIADFQPFVTSGVVPPPANP 116

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+K+R ++L   LLT
Sbjct: 117 LTISQPCIRL----NDLDSVGRSGRHLTCFEMMAHHAFNSDEKEIYWKDRTVELCDQLLT 172

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               L   +  +T                             ++ W     G  GP  E+
Sbjct: 173 S---LGANKEMVTY---------------------------KEHPWIGG--GNAGPSVEV 200

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---------NKQERFILPKMSIDT 226
                                 +E+  LVFM   +Q              + +    +DT
Sbjct: 201 LI------------------GGLEVATLVFMSLGKQKTEKPPIELEGTPYYPMTLRIVDT 242

Query: 227 GMGLERMATVLQEKTNNYD--------------------------------------IDL 248
           G GLER     Q     YD                                      +D+
Sbjct: 243 GYGLERFVWASQGSPTIYDAVFPEMVSHVMQEAGFGHRLHDSDFIHILGENAKFAGLMDI 302

Query: 249 FKHLIQASEQVTGMKYEGNNIV---------NHRVIVDHLRSSSFLIADGILPANEGRGY 299
               I    Q    K                +   IVDH R  S+++ D I+P+N   GY
Sbjct: 303 SGQRIFELRQKVAEKIGIPTDKLEKMIAPVESVYAIVDHTRCLSYMLGDCIVPSNAKDGY 362

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           + R ++RR +   R L   +  +  L+      +G +  E  Q   ++ E +  E +++ 
Sbjct: 363 LARLVLRRTLRMMRELDLPDEKLGDLIERQMKIIGLSKFE--QDPDVVMEIVDREVDKYR 420

Query: 360 KTLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            T++RG   ++ +      K E +  D    LYD+HG+P D+++D+  ++G        F
Sbjct: 421 TTMERGARTVERLAQTYKKKCEKIPLDEIITLYDSHGIPPDMVKDLATSQGAVVDLPDDF 480

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              +    S +               +         T+ + Y+     +F          
Sbjct: 481 YSRIANMHSESEQIQEKNPLF----DYLDRLAHLPETRKLFYERPGSMEF---------- 526

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + V  I                 VV DQT FY E GGQ GDTG  +   
Sbjct: 527 ----------EAKVLEIF------------DGQYVVLDQTLFYPEGGGQPGDTGLFLTPD 564

Query: 539 I-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +++ D  K  E I       + G +R    +   +D   R  L  +H+ATH+L HA 
Sbjct: 565 GLTVRVCDTIKLGESILHRI---DGGNVRKGDMIRGILDEDRRLSLMRHHTATHILLHAA 621

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+H+ Q G+       R D+ H K IT  ELK IE   N ++  N        +R 
Sbjct: 622 KEVLGAHIHQAGAQKGEYSSRIDIRHYKHITPEELKKIEVVANRLVMANSSTSIAWEDRT 681

Query: 658 DAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           DA       L         R+RVV V            C GTH + TG+I  + I+    
Sbjct: 682 DAEQKYGFCLYQGGVPPGSRIRVVKVAG------DIEACAGTHCAHTGDIGTISIIRVEH 735

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           ++ G+ R+E   G  A  H   Q++ L   A    V    +    +  ++E+++ +    
Sbjct: 736 VQDGVERLEFAAGIAAIQHKHHQEDLLNRSAEAFSVQVEALPATSKRFFDEWKEQRKEIE 795

Query: 776 KR---KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K      +L  ++L       ++ +   + ++ + EL  V   +  K   GI +LV   +
Sbjct: 796 KLSSRISELESKNLETVDYNGISVLVKRL-DLPNPELVKVATGISDK--GGIAILVAGGE 852

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             +  V             A D+      VL GG GGG+P +AQ GGP+ +K D A+A  
Sbjct: 853 TARVVVSSG-----QKGVKAGDVISTVCAVL-GGKGGGKPTLAQGGGPDVSKIDDALAAG 906

Query: 893 ASFLK 897
            SF+K
Sbjct: 907 ESFIK 911


>gi|17536681|ref|NP_496444.1| Alanyl tRNA Synthetase family member (ars-1) [Caenorhabditis
           elegans]
 gi|74966572|sp|Q23122|SYAM_CAEEL RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=AlaRS B; AltName: Full=Alanine--tRNA ligase; Flags:
           Precursor
 gi|6176436|gb|AAF05590.1|AF188715_1 alanyl-tRNA synthetase [Caenorhabditis elegans]
 gi|14530594|emb|CAA91396.2| C. elegans protein W02B12.6a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 793

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 217/767 (28%), Positives = 358/767 (46%), Gaps = 55/767 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + S +R +F EFF+   HE+L SSS+IP  ND TL+FTN+GM  FK +     +   + V
Sbjct: 23  SHSELRKSFYEFFKSKNHEILRSSSVIPDENDGTLLFTNAGMNQFKPLILSSTE--SRRV 80

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF-KERAIQLAWDLLTKEFDL 120
             +QKC+RAGGKHNDLD+VG+   H TFFEM+GN+SF   F KE A + AW+ L +   +
Sbjct: 81  ANIQKCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKEEACRYAWEYLVEILGI 140

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY++ +         ED E  ++WK+  G+S+++I+     +NFW M   GPCGPC
Sbjct: 141 NADRLYVSYFGGIEKLGLPEDRECREIWKR-IGVSSNRILPFVA-ENFWEMGAAGPCGPC 198

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI +D+          + ++    +EIWN+VFM   + +  +   L K  IDTGMG ER
Sbjct: 199 TEIHYDRIGGRDASRLVNIDDS--VVEIWNIVFMSSVRDSCGQIRHLGKNHIDTGMGFER 256

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIAD 288
           + +V+Q KT+N+D D+F  +++ + ++   +Y    +       R++ DH+R+++  I+D
Sbjct: 257 LLSVVQNKTSNFDTDVFTPILEKTSELAKKQYTGSLDSRQDATFRLVADHIRAATVAISD 316

Query: 289 GILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G +P   G G+++R++MRRA       LG     M  L+P + + M   YPE+      I
Sbjct: 317 GAVPDGTGCGFIVRKMMRRAFLQGISKLGIERYAMSELVPVVASTMKEVYPEIHDTSTHI 376

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +    E+ +F KT+D+   + D V +   K  I++G  AF L++THGLPL +  ++   
Sbjct: 377 RKIFNDEEAQFWKTVDKAKKMFDSVAAE-SKSPIISGRKAFNLFETHGLPLAVTVELARN 435

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G   +D   F +   E +  ++  S      + +                         
Sbjct: 436 IGRE-VDETEFERCRLEAQKVSQKASQFKLPISADDF---------------------PS 473

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
              +++     +        V + +  + +  +  E   +  +  +V ++  FY E GGQ
Sbjct: 474 HSDKEKYSYVFRNGKYEFPQVKTRILQVYKDQQKAESLEANDRGFLVLEECQFYGEQGGQ 533

Query: 528 LGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
             DTG   I      ++ + +K A G            +R ++ +   +D   R  +   
Sbjct: 534 TSDTGHLLIDGREVFEVENAKKIAGGAVTVLFGRALLPIRRDLRVEQKLDETRREGVMRA 593

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH------SKPITSAELKSIEDNVN 640
           HSATHLL+ AL  +      Q GS +  D  RFD +        +  T   +K       
Sbjct: 594 HSATHLLNWALQKLGV-GSGQKGSSVDCDRFRFDYSTGDEDLSKEQRTELLIKCEMKMRE 652

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            I       +      E        + +         V  V    G       C GTH+ 
Sbjct: 653 FIQNGGFTEIIETSLEEAKKIENLQSDVKEDRIGGASVRVVALGSGADVPVECCSGTHIH 712

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRA---RSHLMGQDEKLKS 744
               I  + I+S+ S+   +RRI  +TG+ A   R++     E L+S
Sbjct: 713 DVRVIDDVAIMSDKSMGQRLRRIIVLTGKEAAACRNYTKSIYEDLRS 759


>gi|14590220|ref|NP_142285.1| alanyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|6707751|sp|O58035|SYA_PYRHO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3256687|dbj|BAA29370.1| 915aa long hypothetical alanyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 915

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 218/966 (22%), Positives = 396/966 (40%), Gaps = 183/966 (18%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVY 58
            +  +R  FL FF+K+    H  +    ++P     ++   + ++ F+    +G+  P  
Sbjct: 58  TLDEMREKFLRFFEKHEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +   Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +                                 IT  +N W+    G  GP  
Sbjct: 174 FTKELKMKPED-----------------------------ITFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------------QERFILPK 221
           E+ +                  R +E+  LVFMQ+++  +            ++   +  
Sbjct: 203 EVLY------------------RGLEVATLVFMQYKKAPENAPQDQVVVIKGEKYIPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHL-------------------------IQAS 256
             +DTG GLER+  + Q     YD  L   +                         +   
Sbjct: 245 KVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLKKMAGIEKIDEKILMENSRLAGMFDI 304

Query: 257 EQVTGMKYEGNNIVN------------------HRVIVDHLRSSSFLIADGILPANEGRG 298
           E +  ++Y    +                       I DH ++ +F++ADG++P+N   G
Sbjct: 305 EDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVKAG 364

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+ R ++R+++ + R LG   PL   ++     E+   +PE  + + +I E +  E++++
Sbjct: 365 YLARLLIRKSIRHLRELGLEVPLS-EIVALHIKELHKTFPEFKEMEDIILEMIELEEKKY 423

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL RG  L+   ++ L K  I  +  +     Y++HGL  +I+++I    G+      
Sbjct: 424 AETLRRGSDLVRREIAKLKKKGIKEIPVEKLVTFYESHGLTPEIVKEIAEKEGVKVNIPD 483

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F   + ++  R +           E + F L +    T+ + Y+     +F        
Sbjct: 484 NFYSMVAKEAERTKE------EKGEELVDFELLKDLPDTRRLYYEDPFMKEF-------- 529

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V  +++               V+ D T FY E GGQ  DTG  I 
Sbjct: 530 ------------DAKVLRVIKD-------------WVILDATAFYPEGGGQPYDTGVLIV 564

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G  +++T+VQK  + I   H + + G  +  M +   ID++ R Q   +H+ TH+L  A
Sbjct: 565 NGREVKVTNVQKVGKVII--HKVEDPGAFKEGMIVHGKIDWKRRIQHMRHHTGTHVLMGA 622

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +T D  R D++H K I+  ELK IE   N I+ ++  V    + R
Sbjct: 623 LVRVLGRHVWQAGSQLTTDWARLDISHYKRISEEELKEIEMLANRIVMEDRKVTWEWLPR 682

Query: 657 EDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             A       L          +RVV +E  D        CGGTH+ STG +  + I+   
Sbjct: 683 TTAEQKYGFRLYQGGVVPGREIRVVKIEDWD-----VQACGGTHLPSTGLVGPIKILRTE 737

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I+ G+ RI    G+ A      + + LK  ++ L+V    +    E  + E+++ +   
Sbjct: 738 RIQDGVERIIFACGEAAIREWQKERDLLKKASNVLRVPPEKLPETAERFFNEWKEARKEV 797

Query: 775 AKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K K +L        +    KI  + F+  ++     ++L+ +++ L+K     +++L+ 
Sbjct: 798 DKLKKELARLLVYELESKMQKIGSIEFIGEVVEG-SMEDLRELVEKLKK--PKRVVVLIS 854

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
                     + V  ++     A +LA+    ++ GGGGGGR  +AQ    + +KA   I
Sbjct: 855 RDG----YFAVSVGSEV--GVEANELAKKI-TLIAGGGGGGRRDIAQGKVKDISKAKDVI 907

Query: 890 AGVASF 895
             + S 
Sbjct: 908 ESIKSM 913


>gi|18976642|ref|NP_577999.1| alanyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|22096192|sp|Q8U425|SYA_PYRFU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|18892213|gb|AAL80394.1| alanyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 914

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 219/967 (22%), Positives = 399/967 (41%), Gaps = 183/967 (18%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVY 58
            +  +R  FL FF+K+    H  +    ++P     ++   + ++ F+    +G+  P  
Sbjct: 58  TLDEMREKFLSFFEKHEVYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLTISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKHIYWIDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +                                 IT  +N W+    G  GP  
Sbjct: 174 FTKELKMKPED-----------------------------ITFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPK 221
           E+ +                  + +E+  LVFMQ+++               ++   +  
Sbjct: 203 EVLY------------------KGLEVATLVFMQYKKAPANADPSQVVIIKGEKYVPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHL-------------------------IQAS 256
             +DTG GLER+  + Q     YD  L   +                         +   
Sbjct: 245 KVVDTGYGLERLVWMSQGTPTAYDAVLGYVIEPLKRMAGVEKIDERILMENSRLAGMFDI 304

Query: 257 EQVTGMKYEGNNIVN------------------HRVIVDHLRSSSFLIADGILPANEGRG 298
           E +  ++Y    +                       I DH ++ +F++ADG++P+N   G
Sbjct: 305 EDMGDLRYLREQVAKRVGISVEELERLIRPYELIYAIADHTKALTFMLADGVVPSNVKAG 364

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+ R ++R+++ + R LG   PL   ++     E+   +PE  + + +I E +  E++++
Sbjct: 365 YLARLLIRKSIRHLRELGLEVPL-AEIVAMHIKELSPTFPEFKEMEDIILEMIELEEKKY 423

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL RG  L+   ++ L K     +  +     Y++HGL  +I+++I    G+      
Sbjct: 424 AETLRRGSDLVKREIAKLKKKGANEIPLEKLITFYESHGLTPEIVKEIAEKEGVKVHIPD 483

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F   +      A+     +     E + F L +    T+ + Y+     +F        
Sbjct: 484 NFYSLV------AKEAEKQVEEKEEEVVDFELVKDLPDTRTLYYEDPFMKEF-------- 529

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V  +++               VV DQT FY E GGQ  DTG  + 
Sbjct: 530 ------------DAKVLKVIED-------------WVVLDQTAFYPEGGGQPYDTGILVV 564

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG  +++T+VQK  +   + H +    + +    +   ID++ R Q   +H+ TH+L  A
Sbjct: 565 DGEEVKVTNVQKVGK--VILHKVERPELFKEGTIVHGRIDWERRIQHMRHHTGTHVLMGA 622

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS ++ D  R D+TH K I+  E+K IE   N ++ +N  V    + R
Sbjct: 623 LVRVLGKHVWQAGSQLSTDWARLDITHYKRISDEEIKEIERLANRVVMENRRVRWEWLPR 682

Query: 657 EDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +A       L          +R++++E  D        CGGTH+ STG I  + I+   
Sbjct: 683 TEADEKYGFRLYQGGVVPGRIIRILNIEDWD-----VQACGGTHLPSTGLIGPIKILRTE 737

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I+ G+ RI    G+ A      + E +K  +  L+V    +    E  + E+++ +   
Sbjct: 738 RIQDGVERIIFACGEAAVREWQKEREIIKRTSQILRVPPEKLPETAERFFNEWKEARKEV 797

Query: 775 AKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K + +L        +    K+ ++ F+  I+      +L+   + L+K+  + +++L  
Sbjct: 798 EKLRKELAKLLVYELESKVEKVGEIEFIGEIVEG-SMDDLREAANKLRKE--NRVVVL-- 852

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++KE     ++ V + L   + A + A+L   V GGGG GGR  +AQ    +  KA +AI
Sbjct: 853 VNKEG--HFVVAVGDKLP--YTAGEFAKLITSVAGGGG-GGRKELAQGKIRDIEKAKEAI 907

Query: 890 AGVASFL 896
             V   L
Sbjct: 908 EKVKGSL 914


>gi|15679677|ref|NP_276794.1| alanyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|3334347|sp|O27718|SYA_METTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2622813|gb|AAB86155.1| alanyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 898

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 232/951 (24%), Positives = 384/951 (40%), Gaps = 175/951 (18%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTT 63
            I+  F+EFF + GHE +    ++       +    + +  F+   T G  KP    +  
Sbjct: 58  EIQDKFMEFFAERGHEPIRRYPVLAKRWRDDVFLVGASIYNFQPWVTSGLVKPPANPLVV 117

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEF 118
            Q  +R     ND+DNVGRT RH T F M G+ +F       Y++E  I+   D LT   
Sbjct: 118 AQPSIRL----NDVDNVGRTGRHLTCFTMGGHHAFNSEDNTVYWEEETIKYCHDFLT--- 170

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
                                     G+   +I  I   +++W     G  GPC E+   
Sbjct: 171 ------------------------HIGIDPSEITFI---ESWWQGG--GNEGPCYEV--- 198

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                            R +E+  LVF+Q+       R  +P   +DTG GLER A + Q
Sbjct: 199 ---------------CVRGVELATLVFIQYRTLPDGGREEIPLKIVDTGYGLERFAWISQ 243

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN------------------------------- 267
                YD      +I+   ++TG+K +                                 
Sbjct: 244 GTPTAYDA-CLGPVIEKLVELTGVKIDEEILAENAQVAGMMDIETYADLRELRKRVADKL 302

Query: 268 ------------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                        + +   I DH R  +F++ADG++P+N   GY+ R I+RR +   + L
Sbjct: 303 GISVEELERAAAPMESVYAIADHTRCLAFMLADGVIPSNVKEGYLARLIIRRTLRLMKDL 362

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G  E L   ++      +   YPE+      I   +  E+ R+ +T+ RG  +++  + +
Sbjct: 363 GMKESLK-DIMNIQVEFLEGHYPEIRSHHEHILNIIDLEEHRYARTVKRGRRIVEKTIKY 421

Query: 376 LGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           L +D    +  ++  KLYD+HG+P + + +I    G       +F   + E+        
Sbjct: 422 LKRDGKAEMPLEILIKLYDSHGIPPETIGEIAEESGFQVKIPDNFYTLVAERNE------ 475

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                  TE     +   Y AT+ + YD     +F                     + V 
Sbjct: 476 -----TETEMPEEDVHLDYPATELLFYDEPDDLEF--------------------QAEVI 510

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
            I + G             ++ D+T FY E GGQ  DTG    +G RL+I   +K    +
Sbjct: 511 GIHENG-------------LILDRTLFYPEGGGQPSDTGYITAEGCRLRIKHAEKIGAVV 557

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
                      +    ++   ID   R QL+ NH+ATHL+  A   +LG H+ Q G+   
Sbjct: 558 VHRTDDEIC--IEPGTTIRGFIDSDRRLQLTRNHTATHLIVSAARKVLGDHIWQAGAQKG 615

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TK 671
               R D++H + IT  EL+ IE   N+ +  N+P+  R M+R+ A       L      
Sbjct: 616 VKSSRLDLSHYRRITLEELQEIERLANEYVMMNVPLKVRWMDRDLAERKYGFILYQGGVV 675

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              R+RVV +   D        C GTHV  TG+I L+ I     I+ G+ RIE   G  A
Sbjct: 676 PGSRIRVVEIPGVD-----VQACAGTHVHRTGDIGLIRINRTERIQDGVERIEFSAGSAA 730

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS---- 787
              +    + L+  +   KV+   + G  E  + E++ L+   ++ K ++    +     
Sbjct: 731 IEIMQKTGDILRESSDIFKVTPSQLPGTCERFFTEWKALRNEVSRLKEKVASLKILEMKD 790

Query: 788 -CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
              +I D+  +   + + D  E+K++   L   +    ++L   + E K  ++   +ED 
Sbjct: 791 RAERINDLTVIIDTV-DADMDEMKNMALELSATVD--AVVLA--NPEGK--IVGAASEDA 843

Query: 847 LD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +       ++   +A VLGGGG GGRPH+AQ  GP  +K D+A+    + L
Sbjct: 844 VKAGLRINEVISQAAAVLGGGG-GGRPHLAQGAGPATDKVDEALEEARAAL 893


>gi|205374235|ref|ZP_03227034.1| alanyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 673

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 255/703 (36%), Positives = 390/703 (55%), Gaps = 43/703 (6%)

Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
           F QF          LPK +IDTGMGLERMA V+QE   N++ DLF  +I+  E ++G+ Y
Sbjct: 2   FSQFNHNPDHTYTPLPKKNIDTGMGLERMACVVQEVPTNFETDLFMPIIKEVEGISGVTY 61

Query: 265 EGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
             +     + +VI DH+R+ SF I DG LP+NEGRGYVLRR++RRA+ +A+ +G  +P M
Sbjct: 62  HPHSEEATSFKVIADHIRTVSFAIGDGALPSNEGRGYVLRRLLRRAVRFAKAIGINDPFM 121

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--E 380
             L+P +   M   YP + +    I++ +++E++RF +TL+ GL +L  V+ +   +   
Sbjct: 122 YKLVPVVAEIMVDFYPVVKEKIEFIQKVVKNEEDRFHETLNEGLAILSTVIENAKSEGST 181

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           ++ G   F+LYDT+G P+++ ++     G+  +D   F   +E+QR RAR     +GS  
Sbjct: 182 VIPGSDVFRLYDTYGFPVELTEEYAEEAGMT-VDEEGFRHEMEQQRERARNARQDVGSMK 240

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
            +     L E    + FIGY+ +                        V ++V  ++ +  
Sbjct: 241 VQGGV--LGEIETNSTFIGYNQM-----------------------SVDTVVTDLIVEEA 275

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
              EA  G++++ V  +TPFYAE+GGQ+ D G    +  ++Q+ DV+K   G  VH   V
Sbjct: 276 FSTEANEGKEIQFVLKETPFYAESGGQIADGGIVESENGKIQVLDVKKAPNGQHVHRGRV 335

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G ++   S+  TI+   R+Q+  NH+ATHLLH AL  +LG HV+Q GS +  D LRFD
Sbjct: 336 VAGTIKVADSVKATINELARKQIVKNHTATHLLHRALKDVLGEHVNQAGSLVQTDRLRFD 395

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +H   +T  EL+ +E +VN+ I + + V  +  + E+A A GA AL G KY D VRVVS
Sbjct: 396 FSHFGQVTKEELEQVERHVNEQIWKGISVDIQSKSIEEAKAMGAMALFGEKYGDVVRVVS 455

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           V     G +S  LCGG HV +T  I L  I SES I AG RRIEA+TG+ A   L  +  
Sbjct: 456 V-----GDYSIELCGGCHVENTASIGLFKIASESGIGAGTRRIEAVTGEGAYRLLNEKVM 510

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVN 795
            L+  +  LK    +++ R++ +  E + +Q  +     +L   +      S   I  VN
Sbjct: 511 MLEEASDRLKTKPDSLLTRIDGLLGELKDVQRENESLNAKLANIEAGSLIDSVESIDGVN 570

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVD 854
            +S  +  VD   L+S+ D L+ KI SG+I+L  +  + K +++  VT+DLLD+ ++A  
Sbjct: 571 VLSANVQGVDMNSLRSMADDLKTKIHSGVIVLGSVQGD-KVNIIAAVTKDLLDKGYHAGK 629

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L +  A   GGGG GGRP MAQ+GG N  + D A+  V  ++K
Sbjct: 630 LVKEVASRCGGGG-GGRPDMAQAGGKNPAQLDDALKFVYEWVK 671


>gi|66911311|gb|AAH97014.1| Zgc:113920 [Danio rerio]
 gi|213624850|gb|AAI71667.1| Zgc:113920 protein [Danio rerio]
 gi|213624852|gb|AAI71669.1| Zgc:113920 protein [Danio rerio]
          Length = 433

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 162/420 (38%), Positives = 242/420 (57%), Gaps = 25/420 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++           G +      + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG    +   + F    +  L ++
Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPEGMLFTGASSLHLHIN 423


>gi|332026963|gb|EGI67059.1| Alanyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]
          Length = 1085

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/860 (26%), Positives = 366/860 (42%), Gaps = 100/860 (11%)

Query: 2   SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + IR  FL++F K+  H  + SS + P  D ++ F N+GM  FK IF    KP    
Sbjct: 17  KPANLIRNEFLDYFTKDLKHSFIRSSPVSPITDHSVAFINAGMNQFKGIFLDYYKPPVTK 76

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R GGKHNDL  VG+ + HHTFFEMLGN+SFG YFKE A   AW+LLT  +D+
Sbjct: 77  VVNSQKCIRVGGKHNDLSIVGKDSYHHTFFEMLGNWSFGDYFKEDACSYAWNLLTNVYDI 136

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
               LY+T +          D E   +W ++ GL   K++     DNFW M  +GPCGPC
Sbjct: 137 PTEYLYVTYFGGNEELGMSPDLECKDIWLRL-GLPEHKVLPFGMRDNFWEMGVSGPCGPC 195

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI  D  +         ++     +E+WN+VF+Q E+        LP   IDTGMGLER
Sbjct: 196 TEIHVDYMKRSTNQAERVNKGYADLMELWNIVFIQCERLTNGCIVPLPNHHIDTGMGLER 255

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------IVNHRVIVD 277
           + T LQ K +NYD DLF+ L  A ++ +                          +R++ D
Sbjct: 256 LVTFLQGKKSNYDTDLFQPLFDAIQKHSNAPEYKGKFDDDTGKTMVTELSLDYGYRILAD 315

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H R  +  +AD +LP    +   LR+I+R AM           ++  L   +   +G  Y
Sbjct: 316 HARMITIALADDMLPE---QHPKLRKILRHAMDIGEKTFRKSGIVSELACNVADNLGVTY 372

Query: 338 PELIQAKLLIEETLRSEDERFGKTLD----------------------------RGLVLL 369
           PEL      +++ +  E+E   +  +                             G   L
Sbjct: 373 PELHTNLKQVQKIIDFEEELLKRLRNTSGKMWNKMIKTRPELIAVTDWMAPGLVDGYKDL 432

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
             +L  L K  +L+G VAFKLYDT+GL  + + ++         D I F + L+ +R ++
Sbjct: 433 QSMLKELRKTNVLSGIVAFKLYDTYGLNSETIAELAQIE-CLYFDEIDFEKQLDNRRYQS 491

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           R       +  T++    LK+ +              K     +        I     +S
Sbjct: 492 RIGLDKHSTVITKESLGILKKNHVP------------KTDDSFKYNYTYNGNIYEFPVLS 539

Query: 490 SIVKAIVQQGEIVEE----------------------AVSGQKVEVVFDQTPFYAEAGGQ 527
           S +  I+  GE+V                          S  K+ ++ D+T  Y+  GGQ
Sbjct: 540 SKLIGIIVNGELVASKNYSDIKTNNTNNKTVVNIDEILNSTNKIGIILDKTICYSLEGGQ 599

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL---- 583
           + D G      +   I +V+K    +       +  +  +E+ L +  D     +     
Sbjct: 600 VSDKGNIRIKNLLFNIDNVRKVNGYVIHSGYFAKTDLSISELHLQIDDDCLVNIESNIRI 659

Query: 584 --SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVN 640
               +H+A HLL+ AL  ++   + Q G  +  D L+F   +  + +T  ++K+IED +N
Sbjct: 660 GAMKHHTAAHLLNAALKQVMQV-IYQRGCTVDMDSLKFQFNSLGEQLTLEQMKTIEDCIN 718

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           ++I        + +N  + +      LL  +      +  VE     + +   C GTHV 
Sbjct: 719 NVIQSRAVTTVQTVNSLELLKQNDVMLLPGEIYPYTDIKIVEINTNDLKAKETCCGTHVH 778

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +     ++ +S  A  R ++A+ G  A       +   + ++    V + +     
Sbjct: 779 NTDVLQHFCFLTYTSKGATKRIVKAVVGPEALRMKQAGENICQRISELEGVLRSDKFTY- 837

Query: 761 EEIWEEYRKLQLIHAKRKLQ 780
           E    E  +++     + +Q
Sbjct: 838 ELFNTELNRIKQEINAQNIQ 857


>gi|169806523|ref|XP_001828006.1| alanyl-tRNA synthetase [Enterocytozoon bieneusi H348]
 gi|161779146|gb|EDQ31171.1| alanyl-tRNA synthetase [Enterocytozoon bieneusi H348]
          Length = 817

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 229/801 (28%), Positives = 395/801 (49%), Gaps = 65/801 (8%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           MV FKNI  G E P+Y+ V T+Q C+RAGGKHNDLD+VG+ N HHTFFEM+GN+SFG YF
Sbjct: 1   MVQFKNIILG-ESPMYKRVNTIQHCIRAGGKHNDLDDVGKDNYHHTFFEMMGNWSFGDYF 59

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDE-DEEAFKLWKKISGLSADKIIRITTNDNFW 161
           KE+AIQ A++ L     LD+ RLY+T+Y+E D E+  +WKK      +KII  +  DNFW
Sbjct: 60  KEQAIQYAYEFLVDVLKLDKDRLYVTIYEEMDVESRNIWKKY--FPDEKIINGSHKDNFW 117

Query: 162 SMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
            M E GPCGPC+EI +D+           +++    IEIWN+VFM+F +  K    +  K
Sbjct: 118 EMGEFGPCGPCTEIHYDRIGNRD-ARNLVNKDDPNVIEIWNIVFMEFNKTPKGLLPLEVK 176

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----VNHRVIVD 277
             IDTG+GLER+ ++L    +NY ID F ++I   E    M Y            RV+ D
Sbjct: 177 K-IDTGIGLERLLSILNNVKSNYLIDTFLNIINFIEIKCNMTYNDEENTIITTAFRVVAD 235

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  +   +  +NEGRGYVLRRI+RRA+ +A   L   + ++  ++      +   
Sbjct: 236 HARTLAICLYYNVSFSNEGRGYVLRRILRRAVRFASEILNINDNVLSEIVQKAAQVL--- 292

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
                    +    +  E++ F KTL  GL+ L+ ++     +  ++ + AF LYDT+G 
Sbjct: 293 -----NLSSINVSVIDYEEKLFKKTLKNGLIKLNKIIE---AEGKISSENAFLLYDTYGF 344

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P D+ + I   +G   I++  F   L  Q+ ++            EK   S+K ++  T 
Sbjct: 345 PKDLTKIIAEEKG-IEINLDKFENLLNNQKKKS----------KGEKDIISIKFEFDKT- 392

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                                          +   ++AI+   EIV    + Q+ +++F+
Sbjct: 393 ---------------------DDKFKYTHTEIKGELQAIIFNNEIVHSLDNEQEAQLIFN 431

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTI 575
           +T FY E GGQ+GDTG        +Q+         I   +     +   +  ++ +L I
Sbjct: 432 KTCFYGECGGQVGDTGTITFFDNDVQVGWFNVINTKIVRGYVLHYGKLFGKISINGLLKI 491

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +   R  +  NHS+ H++   +   + ++V Q GS +      +D  +   I+ ++L  +
Sbjct: 492 NNDRRINIRNNHSSCHIIGGLIKQFISTNVEQKGSYVDEFKCTYDFNYPSKISDSQLIEL 551

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALC 694
           E   ND I   + +  + +++++ +      L+   +Y + +RV+ ++ +D  +    LC
Sbjct: 552 EKKANDFICSGINITVQYLSKKEVLDDPNIILMKNVEYPEPMRVIVMKSKD--LVLKELC 609

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTH  +  +I  + I++E+ +  G+RRI  ++G+ A        +  K++ +   +   
Sbjct: 610 GGTHAENLQDIKKIRIINENGVSMGVRRITLVSGKLAEECDQNVIKIKKAIENNEILPLN 669

Query: 755 NVVGRVE--EIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELK 810
            ++  V+  +   +Y++L     K   +   + +    ++I +       ++      +K
Sbjct: 670 ILLPIVDKRKFEIQYKELIKQQNKETQKHIDQLICNIKNEILNNTLAKLTLTNNKVNIIK 729

Query: 811 SVMDALQ--KKIQSGIIMLVG 829
             +D  +  KK+ S II+ +G
Sbjct: 730 KKIDYFKANKKVCSKIIVSIG 750


>gi|309243075|ref|NP_001035124.2| alanyl-tRNA synthetase, cytoplasmic isoform 2 [Danio rerio]
          Length = 433

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 162/420 (38%), Positives = 243/420 (57%), Gaps = 25/420 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++           G +      + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG+   +   + F    +  L ++
Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGESTTIPEGMLFTGASSLHLHIN 423


>gi|298526028|ref|ZP_07013437.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|298495822|gb|EFI31116.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
          Length = 750

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 252/773 (32%), Positives = 381/773 (49%), Gaps = 62/773 (8%)

Query: 156 TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
             DN+WSM   GPCGP SEI++D+G            E  RY+E+WNLVFMQ E+     
Sbjct: 1   MADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTT 59

Query: 216 RF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EG 266
           +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V    Y     
Sbjct: 60  KEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNH 119

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
            + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+
Sbjct: 120 EDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLM 179

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNG 384
             +   MG +YPEL+     I     +E+  F +TL  G  L + V S        +L+G
Sbjct: 180 ATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSG 239

Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI 444
             AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A +        +  
Sbjct: 240 SDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLS 298

Query: 445 WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
            +      GAT+F G+D LR                         + +  I   G+ V  
Sbjct: 299 AYRELVDAGATEFTGFDELRS-----------------------QARILGIFVDGKRVPV 335

Query: 505 --------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEG 552
                   A  GQ+VE+V D+TP YAE+GGQ+ D G   G    +  R  +TDVQK A+ 
Sbjct: 336 VAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKT 395

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG +  Q GS  
Sbjct: 396 LWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLN 455

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
            P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A GA AL G  Y
Sbjct: 456 RPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESY 515

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  + 
Sbjct: 516 PDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSF 571

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLS 787
            HL  +   +  LAS LKV    V  RV  + E  R  +    + ++             
Sbjct: 572 RHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAG 631

Query: 788 CHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTE 844
             +I +V  ++  +S  + + +L+S++  ++ K+ S   ++ L+   + +     +    
Sbjct: 632 AQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANP 691

Query: 845 DLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
              D    A DL +  A  +  G GGG+  +AQ  G N    D A+  V S +
Sbjct: 692 AAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 743


>gi|212224880|ref|YP_002308116.1| alanyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212009837|gb|ACJ17219.1| alanyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 909

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 211/964 (21%), Positives = 386/964 (40%), Gaps = 183/964 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVYQAV 61
            +  +R  FL FF+K+GH  +    ++P     ++   + ++ F+    +G+  P    +
Sbjct: 58  TLDEMREKFLSFFEKHGHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++  TK
Sbjct: 118 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +                                 IT  +N W+    G  GP  E+ 
Sbjct: 174 ELGMKAED-----------------------------ITFKENPWAGG--GNAGPAFEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------------QERFILPKMSI 224
           +                  R +E+  LVFMQ+++  +             +   +  M +
Sbjct: 203 Y------------------RGLEVATLVFMQYKKAPENADPSQVVEIKGDKYVPMETMVV 244

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHL-----IQASEQVTGMKYEGNNIVN-------- 271
           DTG GLER+  + Q     YD  L   +     +   E++       N+ +         
Sbjct: 245 DTGYGLERLVWMSQGTPTAYDAVLGYVIEPLKRMAGIEKIDERILMENSKLAGMFDIEDM 304

Query: 272 ------------------------------HRVIVDHLRSSSFLIADGILPANEGRGYVL 301
                                            I DH ++ +F++ADG++P+N   GY+ 
Sbjct: 305 GDLRVLRQEVAKRVGISVEELEKLVRPYELIYAIADHTKALTFMLADGVIPSNVKAGYLA 364

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++R+++ + R LG   PL   ++     E+  ++PE  + + +I + +  E++R+ +T
Sbjct: 365 RLLIRKSIRHLRELGLEMPL-AEIVAMHIKELSPSFPEFKEMEDVILDIINVEEKRYQET 423

Query: 362 LDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L RG  L+   ++ L K  +  +  +     Y++HGL  +I+ +I    G+      +F 
Sbjct: 424 LRRGSDLVKREIAKLKKKGENEIPLEKLILFYESHGLTPEIVAEIAQKEGVKVHIPDNFY 483

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + ++  +               + F L +    T+ + Y+     +F           
Sbjct: 484 TLVAKEAEKEEKKEAAQY-----VVDFELVKDLPDTRTLYYEDPFMKEF----------- 527

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  ++                VV D+T FY E GGQ  DTG   G  +
Sbjct: 528 ---------DAEVLRVIDD-------------WVVLDRTAFYPEGGGQPYDTGELNGVKV 565

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
                  +       + H + E    +  M++   I++  R Q   +H+ TH+L  AL  
Sbjct: 566 TNVQKVGK------VILHRVEEPEKFKEGMTVHGRINWDRRIQHMRHHTGTHVLMGALVR 619

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +  D  R D++H K IT  EL+ IE   N I+ +N  V    + R +A
Sbjct: 620 VLGKHVWQAGSQLHTDWARLDISHYKRITEEELREIERLANRIVMENRRVAWEWLPRTEA 679

Query: 660 IASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L          +RV+ +E  D        CGGTH+ +TG +  + I+    I+
Sbjct: 680 EMKYGFRLYQGGVVPGRIIRVLRIEDWD-----VQACGGTHLPNTGLVGPIKILRTERIQ 734

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G+ RI    G+ A + +   +  LK  +   +V    +       + E+++ +    + 
Sbjct: 735 DGVERIIFAAGEAAVNWMQETERILKRTSEVFRVPPEKLPETAGRFFNEWKEARKEVERL 794

Query: 778 KLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L        +    ++ +V F+  ++      +L+   + L+K     +++L+    
Sbjct: 795 RKELAKLLVYELEDRIERVGEVEFIGAVVEGT-MDDLREAANKLRK--DKRVVLLISREG 851

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
                 ++ V + L     A +LA++   V GGGG GGR  +AQ    N  KA++AIA V
Sbjct: 852 ----HFVVAVGDGL--DLKAGELAKVITSVAGGGG-GGRKELAQGRIKNPLKAEEAIAEV 904

Query: 893 ASFL 896
              L
Sbjct: 905 KKRL 908


>gi|116753969|ref|YP_843087.1| alanyl-tRNA synthetase [Methanosaeta thermophila PT]
 gi|121694533|sp|A0B6X3|SYA_METTP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116665420|gb|ABK14447.1| alanyl-tRNA synthetase [Methanosaeta thermophila PT]
          Length = 913

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 231/966 (23%), Positives = 375/966 (38%), Gaps = 183/966 (18%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + S+R  +L FF+ +GH  +    ++      +  T + +  F+   T GQ  P    
Sbjct: 58  MELDSMREHYLSFFEAHGHTRVQRYPVVARWRDDIYLTIASIADFQPFVTSGQVPPPANP 117

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +T  Q C+R     +DLD+VGR+ RH T FEM+ +  F       Y+K+R ++L  +LL 
Sbjct: 118 LTISQPCIRL----DDLDSVGRSGRHLTTFEMMAHHVFNTKEHEIYWKDRTVELCDELL- 172

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               L                        G+  + I   T  ++ W+    G  GP  E+
Sbjct: 173 --LGL------------------------GVDPESI---TYKESPWAGG--GNAGPSLEV 201

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGM 228
                                 +E+  LVFM     +  E  I       +    +DTG 
Sbjct: 202 LV------------------GGLELATLVFMNLRLDSSGEYVIKGERYSRMDNYIVDTGY 243

Query: 229 GLERMATVLQEKTNNYDI---DLFKHLIQAS---EQVTGMKYEGNNIVN----------- 271
           GLER     +     YD    D+ + L   +     +   +Y      N           
Sbjct: 244 GLERFVWASKGSPTIYDAVFPDIVRELSDLAGVEHDLHDPEYAEIFARNARLAGMIDLGE 303

Query: 272 ------------------------------HRVIVDHLRSSSFLIADGILPANEGRGYVL 301
                                            I DH R  ++++ DGI+P+N   GY+ 
Sbjct: 304 ASLRDLRKRIAESINTTPERLERIMAPMERIYAIADHTRCLAYMLGDGIIPSNVKAGYLA 363

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++RR +   + L    PL               Y +  +    I E L  E+ER+ +T
Sbjct: 364 RLVIRRTLRMMKDLKLEIPLSE---IVEMQISKLDYDDWRERMETISEILSLEEERYAET 420

Query: 362 LDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           L++G  ++  + SH   K   +       LYDTHG+P +I ++   A G+      +F  
Sbjct: 421 LEKGSRMVSKIASHYSKKGGRIPLTELVSLYDTHGIPPEIARETAGALGVDVELPDNFYS 480

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +    SRA    +   S   EK           T+ + Y                    
Sbjct: 481 IVASTHSRAEQREVETRSPPFEK-----------TERLFY-------------------- 509

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V  I              +  VV D+T FY E GGQ  D G  + DG  
Sbjct: 510 YRPFDQEFDATVLGIF-------------EGSVVLDRTLFYPEGGGQPADRGVLVRDGQV 556

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             + DVQ       V H + + G+      +   ID + R   + +H+ATH+++ +   +
Sbjct: 557 FNVNDVQMI--DGVVLHRVEQEGLS-PGDRVTGRIDMRRRMAHARHHTATHIVNDSAKRV 613

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q G+  + D  R D++H + I+  ELK+IE   N  + + +PV+T  M RE+A 
Sbjct: 614 LGRHVWQAGAQKSEDRARLDISHYRRISDEELKAIELEANRRVMEMIPVITEFMPREEAE 673

Query: 661 ASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                 L          +RVV V            C GTHV++TG I  + I+    ++ 
Sbjct: 674 RLFGFQLYQGGVPPGREIRVVRVGS------DIEACAGTHVTNTGMIGPIKILRTERVQD 727

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ RIE   G+ A   +  +D+ L   AS L+V    +   V   +EE++  Q +    K
Sbjct: 728 GVERIEFAAGEAAVQRIQERDDILAEAASILRVPIEQLPRTVFRFFEEWKDQQKVIEHLK 787

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            ++    +         +  V+ ++  + E D + L      L ++    I  ++G +  
Sbjct: 788 EEIAGIRILTLSSEAVDVNGVSIVARDMGESDGETLLKAATMLSER---DITAILGGASG 844

Query: 834 KKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             A +++ V    L    NA D+ R +AK +GGGG GG+P +AQ GGPN      AI   
Sbjct: 845 GAAKIVVSVGRSGLERGLNAADIVRAAAKYIGGGG-GGKPDLAQGGGPNVGGLRAAIDAG 903

Query: 893 ASFLKK 898
            S  +K
Sbjct: 904 MSAARK 909


>gi|260205874|ref|ZP_05773365.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85]
          Length = 751

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 252/774 (32%), Positives = 381/774 (49%), Gaps = 62/774 (8%)

Query: 155 TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
              DN+WSM   GPCGP SEI++D+G            E  RY+E+WNLVFMQ E+    
Sbjct: 1   GMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGT 59

Query: 215 ERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---E 265
            +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V    Y    
Sbjct: 60  TKEDYQILGPLPRNNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGN 119

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
             + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L
Sbjct: 120 HEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDL 179

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILN 383
           +  +   MG +YPEL+     I     +E+  F +TL  G  L + V S        +L+
Sbjct: 180 MATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLS 239

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G  AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A +        + 
Sbjct: 240 GSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADL 298

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
             +      GAT+F G+D LR                         + +  I   G+ V 
Sbjct: 299 SAYRELVDAGATEFTGFDELRS-----------------------QARILGIFVDGKRVP 335

Query: 504 E--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAE 551
                    A  GQ+VE+V D+TP YAE+GGQ+ D G   G    +  R  +TDVQK A+
Sbjct: 336 VVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAK 395

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG +  Q GS 
Sbjct: 396 TLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSL 455

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
             P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A GA AL G  
Sbjct: 456 NRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGES 515

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +
Sbjct: 516 YPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDS 571

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDL 786
             HL  +   +  LAS LKV    V  RV  + E  R  +    + ++            
Sbjct: 572 FRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAA 631

Query: 787 SCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVT 843
              +I +V  ++  +S  + + +L+S++  ++ K+ S   ++ L+   + +     +   
Sbjct: 632 GAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAAN 691

Query: 844 EDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               D    A DL +  A  +  G GGG+  +AQ  G N    D A+  V S +
Sbjct: 692 PAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 744


>gi|300121459|emb|CBK21978.2| Alanyl-tRNA synthetase [Blastocystis hominis]
          Length = 877

 Score =  476 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 232/833 (27%), Positives = 377/833 (45%), Gaps = 66/833 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R  FL++F    H ++P SS+IP +DP+L+F N+GM  FK  + GQ  P  + VT
Sbjct: 27  TAKELRDQFLQYFASKNHTIVPGSSVIPKDDPSLLFVNAGMNQFKKYYLGQAVPEVRRVT 86

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q C+RAGGKHNDLDN+G T RH T FEMLGNFS G Y+K+ AI +A++ ++K   +  
Sbjct: 87  TSQLCIRAGGKHNDLDNIGFTPRHQTMFEMLGNFSLGDYYKDEAISMAYEFVSKVLQIPN 146

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGE 181
             L ++++++D+ A  +WK I+G    +I+     DN WSM     P G CSE+FF    
Sbjct: 147 SHLRVSIHEKDDSARSIWKSIAGFQDSQIVSRGNKDNLWSMGSSDSPSGFCSELFFTTDP 206

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS--IDTGMGLERMATVLQE 239
                        + ++EIWNLVFM  + + +   F L      IDTGMG ERM +VL  
Sbjct: 207 FST---------YDNWLEIWNLVFMNTQSKVRSLFFSLILKGGWIDTGMGCERMLSVLNG 257

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +N++ D+F  ++ + +     ++   +  +  +  DHLR+S  L  + I+P+++GRGY
Sbjct: 258 VPSNFETDVFTGILSSIQA----RFPSLSSSHAHIFADHLRTSVVLANE-IVPSSKGRGY 312

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLR+I RR + +A L     P +  L+PA+   + +  PEL   +  IE  L  E+E F 
Sbjct: 313 VLRKIFRRMLRFAYLNHIDYPFVSELIPAVIQALHAQLPELAGNQEKIERILGMEEEFFW 372

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           + +  G  L+      +G      G+   +L    GLPLD+++ +   + +      S +
Sbjct: 373 RAVAEGKKLVASKAKKVGF---FGGETLRQLRADTGLPLDMVETLFQEKKITVESEAS-D 428

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q L+E+    R   +       E  W          +F G             + V  +K
Sbjct: 429 QLLQEEMENERMAQVEKWGIPPESQWSG--------RFAG-------------QTVEMEK 467

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                +    + ++AI +         SG    VV D+ PF+    GQ GD G  + +G 
Sbjct: 468 LTSLSSVSQKAKIQAISK---------SGNVEFVVLDRCPFFPTQAGQEGDRGVVVWNGR 518

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D  K  + I           L     +   ID ++R+ ++ +HSATHLLH  L  
Sbjct: 519 EIGVMDTIKHGQTIINVLPASN---LPLNSEVECVIDLRHRQAVARHHSATHLLHACLGE 575

Query: 600 ILGSH-VSQNGSCITPDGLRFDVT----HSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
           + G H   Q GS IT     FD           +      + ++  +  A+    V R+ 
Sbjct: 576 LSGVHQSLQAGSHITEKEFSFDFYTGFLTPLLKSPQAFIELVESKMNAAARAEIPVKRVD 635

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
                + +          +   +  +V      G  S   C G HV+++G++  + I   
Sbjct: 636 FTAKDLETVPKGTFIGDISHISQSENVFHTISIGNLSREFCCGQHVANSGDLFPVVISGV 695

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            SI AGI+RI    G  A   L  Q   L  L      S+  +V + E +  + + L+  
Sbjct: 696 QSISAGIKRITGKAGMAASEVLFEQHRTLNQLLGSFACSEKEIVKKAEGLQSQVKSLEQT 755

Query: 774 HAKRKLQLNVEDLSCHKI------ADVNFMSHIISEVDSKELKSVMDALQKKI 820
            A             +++      +     S  + E+ ++  K ++D L  K 
Sbjct: 756 KAALLRFAAASMAPTYEVHCSSNSSSSTLRSLQVFEIPAEIPKEIIDKLMDKN 808


>gi|294495054|ref|YP_003541547.1| alanyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292666053|gb|ADE35902.1| alanyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 924

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 216/967 (22%), Positives = 378/967 (39%), Gaps = 176/967 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N++ +R  +L +F+KNGH  +    +I      +  T + +  F+   T GQ  P    +
Sbjct: 59  NLAQMREFYLSYFEKNGHTRIERYPVIARWRNDIYLTIASIADFQPFVTSGQVAPPANPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R      DLD VGR+ RH T FEM+ + +F       Y+K+R +QL   LL  
Sbjct: 119 TISQPCIRLS----DLDAVGRSGRHLTTFEMMAHHAFNKKSNEIYWKDRTVQLCDGLL-N 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +D                                +T  +  W+    G  G C E+ 
Sbjct: 174 ELGVDP-----------------------------FAVTYKEEPWAGG--GNAGACVEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMG 229
                                +E+  LVFM  +Q    +          +    +DTG G
Sbjct: 203 I------------------GGLEVATLVFMNLQQSKNGDIVIKGDTYRKMDNYIVDTGYG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------- 270
           LER+    Q     YD  +F  ++    ++ G+++   +                     
Sbjct: 245 LERLVWASQGTPTVYDA-IFPEVVGELMELAGVEHRLEDEDYANILSQNARLAGLMDVSE 303

Query: 271 ------------------------------NHRVIVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH R  +F++ DGI+P+N   GY+
Sbjct: 304 KANLLELRKQVASNIGITADKLGTIMEPVETAYAIADHARCITFMLGDGIIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR M   + L    PL   ++      +   YPE      +I + L +E+++F +
Sbjct: 364 ARLVIRRTMKMMQDLDIKIPLS-DIVQMHINHL-PEYPEFADRFDVISDILDNEEKKFQE 421

Query: 361 TLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           TL RG  L+     H  K  E +  D    +YD+HG+P +I ++     G+      +F 
Sbjct: 422 TLQRGKKLIQKSAKHYKKKGEKMPLDTVIDMYDSHGIPAEISREAASEVGVEVELPDNFY 481

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + E+ S++            E  +    +K   T+ + YD     +F           
Sbjct: 482 SLVAERHSKSVQEHEK------EIPYADRLKKLPPTKRLFYDEPNRMEF----------- 524

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     ++V  +                 +V D T  Y E GGQ  D G  + D  
Sbjct: 525 ---------EAVVLDVFDNN-------------IVLDSTLLYPEGGGQPPDHGTFMVDDA 562

Query: 540 RLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            L++ DVQ     +      +E  +  R    +   +D + R   + NH+ATH+++ A  
Sbjct: 563 LLKVIDVQIFDGIVIHTIEEIEDELHIRKGDMVTGKVDEKRRMAHARNHTATHIINDAAR 622

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H+ Q G+    D  R D++H K I   E+  IE   N ++ +N  V++  M+R  
Sbjct: 623 QVLGEHIWQAGAQKFADRARLDISHYKRIVPEEINEIEMIANQMVMENKRVISEWMDRST 682

Query: 659 AIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A      +L        DR+RV+ V            C GTH + TG++  + I+    I
Sbjct: 683 AEKRYGFSLYQGGVPPGDRIRVLHVGS------DIEACAGTHCTFTGQVGPIKILKTERI 736

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + G+ RIE   G+ A      +D+ L+S A  L+V+   +   +E  + E+++ +  + +
Sbjct: 737 QDGVERIEYAAGEAAVVAFQERDKLLRSSAETLRVATEQLPTTIERFFTEWKEFKKENTR 796

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L    +     +  ++ ++  ++  +   D+ EL  +   L       I+ L+   
Sbjct: 797 LKKELAESRVNQLVENAEQLKEIRLINSRVDGADADELTRMAGELAS--SDDIVALLISD 854

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E            +    N  ++ R  A + GGGG GG+P MA+ GG + +K D+ +A 
Sbjct: 855 HEGAKIAAAAGDSAVSKGINVGNIVREIANLTGGGG-GGKPSMARGGGQDSSKIDEGLAL 913

Query: 892 VASFLKK 898
               +++
Sbjct: 914 GRRMVEE 920


>gi|289575261|ref|ZP_06455488.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289539692|gb|EFD44270.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85]
          Length = 750

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/773 (32%), Positives = 381/773 (49%), Gaps = 62/773 (8%)

Query: 156 TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
             DN+WSM   GPCGP SEI++D+G            E  RY+E+WNLVFMQ E+     
Sbjct: 1   MADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTT 59

Query: 216 RF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EG 266
           +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V    Y     
Sbjct: 60  KEDYQILGPLPRNNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNH 119

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
            + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+
Sbjct: 120 EDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLM 179

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNG 384
             +   MG +YPEL+     I     +E+  F +TL  G  L + V S        +L+G
Sbjct: 180 ATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSG 239

Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI 444
             AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A +        +  
Sbjct: 240 SDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLS 298

Query: 445 WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
            +      GAT+F G+D LR                         + +  I   G+ V  
Sbjct: 299 AYRELVDAGATEFTGFDELRS-----------------------QARILGIFVDGKRVPV 335

Query: 505 --------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEG 552
                   A  GQ+VE+V D+TP YAE+GGQ+ D G   G    +  R  +TDVQK A+ 
Sbjct: 336 VAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKT 395

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG +  Q GS  
Sbjct: 396 LWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLN 455

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
            P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A GA AL G  Y
Sbjct: 456 RPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESY 515

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  + 
Sbjct: 516 PDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSF 571

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLS 787
            HL  +   +  LAS LKV    V  RV  + E  R  +    + ++             
Sbjct: 572 RHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAG 631

Query: 788 CHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTE 844
             +I +V  ++  +S  + + +L+S++  ++ K+ S   ++ L+   + +     +    
Sbjct: 632 AQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANP 691

Query: 845 DLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
              D    A DL +  A  +  G GGG+  +AQ  G N    D A+  V S +
Sbjct: 692 AAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 743


>gi|91774109|ref|YP_566801.1| alanyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
 gi|121689045|sp|Q12U25|SYA_METBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91713124|gb|ABE53051.1| Alanyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
          Length = 923

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 204/965 (21%), Positives = 378/965 (39%), Gaps = 178/965 (18%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTV 64
            +R  +L FF++ GH  +    +I      +  T + +  F+   T GQ  P    +T  
Sbjct: 62  DMREFYLNFFEEQGHTRIERYPVIARWRDDIYLTIASIADFQPFVTSGQVPPPANPLTIS 121

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
           Q C+R      DLD VG++ RH T FEM+ + +F       Y+KE  ++L   LL     
Sbjct: 122 QPCIRLS----DLDAVGKSGRHLTTFEMMAHHAFNTKNEEIYWKEHTLELCDGLL-NSLG 176

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D   + +T                             +  W+    G  G C E+    
Sbjct: 177 ADP--MAVTY---------------------------KEEPWAGG--GNAGACVEVLI-- 203

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMGLER 232
                             +E+  LVFM  ++    +  I       +    +DTG GLER
Sbjct: 204 ----------------GGLEVATLVFMNLKKDKNGDIDIKGDMYSKMENYIVDTGYGLER 247

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---------------------- 270
           +    +     YD  +F  ++     + G+++E  N                        
Sbjct: 248 LVWASKGSPTIYDA-IFPSIVNELMGLAGIEHELENNEYSHILSQNARLAGLMDISEKAN 306

Query: 271 ---------------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
                                      N   I DH R  +F+I DGI+P+N   GY+ R 
Sbjct: 307 LLELRKQVAASIGITADKLSSIMEPVENVYAIADHTRCLTFMIGDGIIPSNVKAGYLARL 366

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RR +   + LG   P+   +   +       YPE  +   +I++ L  E+ +F +TL+
Sbjct: 367 VIRRTLRMMKDLGIMIPISEIIQMHINNL--PEYPEFQKRFDVIKDILEHEERKFAETLE 424

Query: 364 RGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           RG  +++    H  +  E +  +    +YD+HG+P +I + +    G+      +F   +
Sbjct: 425 RGRRMMEKSARHYKESGEKMPLETIIDMYDSHGIPPEISKAVASDVGVEVDLPDNFYSLV 484

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            ++ S++      +        +     +   T+ + YD      F              
Sbjct: 485 ADKHSQSEEKEEKV------VPFADKIARLPKTKRLFYDEPNRMDF-------------- 524

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                  ++V  +                 +V D T  Y E GGQ  D G    + + L+
Sbjct: 525 ------DAVVLEVFDN-------------HIVLDNTLMYPEGGGQPADHGTLTVEDVVLK 565

Query: 543 ITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           + D Q     +      +E  +  R    +V  ++ + R   + +H+ATH+++ A   +L
Sbjct: 566 VVDTQMYDGVVVHTINEIEDELHIRKGDMVVGRVNEKRRMAHARHHTATHIINDAAREVL 625

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSH+ Q G+    D  R D++H K IT  E   IE   N  + +N  +++  M+R +A  
Sbjct: 626 GSHIWQTGAQKFADRARLDISHYKRITQEEANQIEIIANHTVMKNKRIISDWMDRTEAEQ 685

Query: 662 SGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                L          +RV+ V            C GTH ++TG +  + I+    I+ G
Sbjct: 686 KYGFRLYQGGVPPGKMIRVLQVGN------DIEACAGTHCTNTGLVGPIKILKTERIQDG 739

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           + R+E   G+ A   +   +  ++  +  L+VS   +   +E  ++E+++L+  + K K 
Sbjct: 740 VERLEYAAGEAAIIAMQDIETLVRDSSETLRVSAEQLPSTIERFFDEWKELKKENNKLKE 799

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L    +S        +  +  ++  I   DS+EL      L ++  S ++ ++    + 
Sbjct: 800 ELAHSRVSQLVNDAEDVNGIRIITKAIPHADSEELTKTAGELTQE--SNVVAILISEMDG 857

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
              ++    +D + R  N   + +  + ++GGGG GGRP+MA+ GG + +  D A++   
Sbjct: 858 -VKIVATAGDDAVKRGVNVGAIVKEMSTMVGGGG-GGRPNMARGGGTDPSGMDNALSRSV 915

Query: 894 SFLKK 898
             LK+
Sbjct: 916 ELLKE 920


>gi|145640917|ref|ZP_01796499.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274431|gb|EDK14295.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 616

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 267/639 (41%), Positives = 371/639 (58%), Gaps = 47/639 (7%)

Query: 142 KISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-E 193
           K  G+ A++IIRI  N       DNFW+M +TGPCGPC+EIF+D G+ I GG PGS E +
Sbjct: 13  KEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEED 72

Query: 194 GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLI 253
           G+RYIEIWN+VFMQF +        LP+ S+DTGMGLER++ VLQ   +NY+ID+FK LI
Sbjct: 73  GDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGLERISAVLQHVNSNYEIDIFKTLI 132

Query: 254 QASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
             + ++ G      +  + RVI DH+RS ++LIADG++P+NEGRGYVLRRI+RRA+ +  
Sbjct: 133 AKTAEIVGATD--LSNKSLRVIADHIRSCAYLIADGVIPSNEGRGYVLRRIIRRAVRHGH 190

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           LLG  E     L+P L   M  A  ++   +  +E+ LR E+E+F +TL+RGL LLD  L
Sbjct: 191 LLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKLLRLEEEQFARTLERGLSLLDEAL 250

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           + +  D++L+G+VAFKLYDT+G PLD+  D+   R +  ID  +F++ +E QR+RA+A S
Sbjct: 251 AQVK-DDVLSGEVAFKLYDTYGFPLDLTADVCRERNIT-IDEQAFDREMEAQRTRAQAAS 308

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                      + S+    G T+F GY  +                          + + 
Sbjct: 309 QFG------VDYNSVIRVDGETKFEGYTEVES-----------------------QAKIT 339

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD+G     G+   + D QK    +
Sbjct: 340 ALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGDSGYLSAQGVTFNVKDTQKYG-QV 398

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           F H   + +G L+   S+   +D + R   S+NHSATHLLH AL  ILG HV Q GS ++
Sbjct: 399 FGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSATHLLHAALRQILGLHVVQKGSLVS 458

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
              LRFD    + IT  +L  IE  VN  I  N PV T IM+ + A A GA AL G KY 
Sbjct: 459 DKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQTDIMDIDSAKAKGAMALFGEKYG 518

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           D+VRV+++     G  S  LCGG H   TG+I L  I++E+++ AGIRRIEA+TGQ A  
Sbjct: 519 DKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKIITENAVAAGIRRIEAVTGQNAID 573

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
            L  Q   L   A  LK     +V +      + RK + 
Sbjct: 574 WLHNQQRILTQSADLLKSDVNTLVEKSNNFKTKRRKWKK 612


>gi|270010617|gb|EFA07065.1| hypothetical protein TcasGA2_TC010044 [Tribolium castaneum]
          Length = 977

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 230/859 (26%), Positives = 381/859 (44%), Gaps = 68/859 (7%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +IR  FL++F  KN H  + SS ++P  DPT+ F N+GM                  
Sbjct: 27  TGKAIRQKFLDYFINKNNHNFIKSSPVVPFCDPTVAFVNAGMN----------------- 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R GGKHNDL+ VG    HHTFFEMLGN+SFG YFK+ A +LAW LLT+E+ + 
Sbjct: 70  ---QKCIRVGGKHNDLNVVGGDGYHHTFFEMLGNWSFGDYFKQEACELAWKLLTEEYKIH 126

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +         ED E  ++W K  G+S D+I+  T+ DNFW M  TGPCGPC+
Sbjct: 127 PSRLYVTYFKGDPVLGIDEDLETKEIW-KTIGVSEDRILPFTSKDNFWEMGPTGPCGPCT 185

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI  D            ++      E+WNLVF+Q+ +++ +   +LP+  +DTGMG ER+
Sbjct: 186 EIHIDHTTS-NNRAKLVNKGLHDLTELWNLVFIQYNRKSNESVDLLPEKHVDTGMGFERL 244

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRVIVDHLRSSS 283
             VLQ K +NYD D F +L++A  +              K   +   ++RV+ DH R  +
Sbjct: 245 TAVLQGKISNYDTDNFTYLLKAIHKNCSKIPEYRGTFGEKDWNSLDASYRVLADHARMVT 304

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL-CTEMGSAYPELIQ 342
             +AD ++P    +   LRR+MRRA      +   +  ++  L       +G  YPE+ +
Sbjct: 305 VCLADAMIPE---QNQKLRRVMRRAFLLCENVFNKDSGLLKELSNYVIEHLGCVYPEMER 361

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN-GDVAFKLYDTHGLPLDIM 401
               I + +  E+E +     +       +  H  K   L+  +    +     +     
Sbjct: 362 NVKQIHQIIDYEEEVYKSVRKQATEEWVKLAKHQPKLLSLDINENPSLVAGYKEISSTNP 421

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-----GATQ 456
           + I         D    ++      ++             +     ++ K      G   
Sbjct: 422 KFIDAQLAFKLYDTFGLDEDSISSLAQILNLPFNASDLHKQLELAKIRSKEQGLVSGPNV 481

Query: 457 FIGYDLLRGSKFMKEDRKVLC---QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
              Y+ L  +K  K DR  L    +K    + + +  ++  IV+  ++V +  S     +
Sbjct: 482 ---YEQLTRAKVPKTDRSTLYNYAKKGEKYVFDDLEVVILKIVKDSKLVRQIESENFYGL 538

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV--HHAIVERGILRTEMSL 571
           V D++ FY EAGGQ+ D G         ++T+ Q     I         E G ++  M+ 
Sbjct: 539 VLDKSSFYTEAGGQISDRGAINFGDCVFEVTEAQDCNGYILHKGFLRSGESGRVKVGMTG 598

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSA 630
            L ID   R +   NH+A HLL+  L  + G+   Q  S +T +    DV    + ++  
Sbjct: 599 SLKIDPDFRLKNMRNHTAVHLLNSVLKKVKGATC-QKSSKVTQNYFNLDVGIFAEKLSLD 657

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDR-VRVVSVEYEDGGV 688
           EL+ +E  +  +I   LPV    ++ +         L+    Y +  +RVV V+  + G 
Sbjct: 658 ELELVESTITKVIQGRLPVNISELDSQRLANLDEIILIPGEVYPETGIRVVEVKGGE-GF 716

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S   C GTHV +T +I    IVS  S+      I  +TG RA+         L +L + 
Sbjct: 717 LSREPCCGTHVLNTSDIEDFCIVSMKSLGRSTTSIHGVTGDRAKVAKSNGTHLLTNLETL 776

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHA-KRKLQLNVEDLSCHKIADV-NFMSHIISEVDS 806
            K    N+  + + +       +       + +  +  +   + AD+ N +S  I +   
Sbjct: 777 EKSVSDNI-DKPDVLNMAITSFKKQLNYSVEDENILPVVVKQQCADILNKISKQIKDSGK 835

Query: 807 KELKSVMD-ALQKKIQSGI 824
           + L+  ++  ++  ++S +
Sbjct: 836 RNLREFIEIEMRNAMESNV 854


>gi|14521870|ref|NP_127346.1| alanyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|13878785|sp|Q9UY36|SYA_PYRAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|5459090|emb|CAB50576.1| alaS alanyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 914

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 220/967 (22%), Positives = 391/967 (40%), Gaps = 183/967 (18%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVY 58
            +  +R  FL+FF+K+    H  +    ++P     ++   + ++ F+    +G+  P  
Sbjct: 58  TLDEMREKFLKFFEKHEVYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +   Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWIDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +                                 IT  +N W+    G  GP  
Sbjct: 174 FTKELKMKPED-----------------------------ITFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------------QERFILPK 221
           E+ +                  R +E+  LVFMQ+++  +                 +  
Sbjct: 203 EVLY------------------RGLEVATLVFMQYKKAPENAPEDQVVIIKGDRYVPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHL-------------------------IQAS 256
             +DTG GLER+  + Q     YD  L   +                         +   
Sbjct: 245 KVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLKRMAGVEKIDERILMENSRLAGMFDI 304

Query: 257 EQVTGMKYEGNNIVN------------------HRVIVDHLRSSSFLIADGILPANEGRG 298
           E +  +K     +                       I DH ++ +F++ADG++P+N   G
Sbjct: 305 EDMGDLKLLRKKVAEKVGISVEELEKAIRPYELIYAIADHTKALTFMLADGVIPSNVKAG 364

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+ R ++R+++ + + LG   PL   ++     E+   +PE  + + +I E +  E++++
Sbjct: 365 YLARLLIRKSIRHLKELGLEVPLS-EIVALHIKELHKTFPEFKEMEDVILEIIDLEEKKY 423

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL RG  L+   ++ L K  +  +  +     Y++HGL  +++++I    G+      
Sbjct: 424 SETLKRGSDLVRREIAKLKKKGMSEIPLEKLITFYESHGLTPELVKEIAEKEGIKVHVPD 483

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F   +       +           E + F L +    T+ + Y+     +F        
Sbjct: 484 NFYSIVA------KEAEKEKEEKEEEVVDFELVKDLPETRTLYYEDPFMKEF-------- 529

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V  ++                +V DQT FY E GGQ  DTG    
Sbjct: 530 ------------EARVLRVIGD-------------WIVLDQTAFYPEGGGQPYDTGVLFV 564

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G  +++T+VQK  + I   H +   G+ +  M +   ID+  R Q   +H+ TH+L  A
Sbjct: 565 NGSEVKVTNVQKVGKVIV--HKVENPGLFKEGMEVRGRIDWDRRIQHMRHHTGTHVLMGA 622

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +T D  R D++H K I+  EL+ IE   N I+ ++  V    + R
Sbjct: 623 LVRVLGKHVWQAGSQLTTDWARLDISHYKRISDEELREIERLANRIVMEDRKVTWEWLPR 682

Query: 657 EDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +A       L          +RVV +E  D        CGGTH+ STG +  + I+   
Sbjct: 683 TEAEQRYGFRLYQGGVVPGRVIRVVKIEDWD-----VQACGGTHLPSTGLVGPIKILRTE 737

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I+ G+ RI    G+ A      + E LK  +  L+V    +    E  + E+++ +   
Sbjct: 738 RIQDGVERIIFACGEAAIKEWQKEREILKKASQVLRVPPEKLPETAERFFNEWKEARKEV 797

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K K +L        +    K+ +  F+  I+      +L+  ++ L+K   + I++LV 
Sbjct: 798 EKLKKELAKLLVYELEAKVQKVKEYEFIGEIVEG-SMDDLREAVERLKK--PNRIVVLVS 854

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
                     I V +++    NA DLA+    + GGGG GGR  +AQ    + +KA +AI
Sbjct: 855 KEG----YFAISVGDNV--NLNANDLAKKLTSIAGGGG-GGRKDVAQGRIKDVSKAKEAI 907

Query: 890 AGVASFL 896
             +   L
Sbjct: 908 ESIVKLL 914


>gi|330507979|ref|YP_004384407.1| alanyl-tRNA synthetase [Methanosaeta concilii GP-6]
 gi|328928787|gb|AEB68589.1| alanyl-tRNA synthetase [Methanosaeta concilii GP-6]
          Length = 909

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 220/963 (22%), Positives = 371/963 (38%), Gaps = 184/963 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  +L FF+  GH  +    +       +  T + +  F+   T GQ  P    +
Sbjct: 60  SLDEMREHYLGFFEARGHTRIKRYPVAARWRDDIYLTIASIADFQPFVTSGQVPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     +DLD+VGR+ RH T FEM+ +  F       Y+K+R ++L  +LL  
Sbjct: 120 TISQPCIRL----DDLDSVGRSGRHLTTFEMMAHHVFNTPDREIYWKDRTVRLCDELLVG 175

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D   L +T                             +N W+    G  GP  E+ 
Sbjct: 176 -LGMDP--LAVTY---------------------------KENPWAGG--GNAGPSVEVM 203

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ-------ERFILPKMSIDTGMG 229
                                +E+  LVFM                   +    +DTG G
Sbjct: 204 V------------------GGLELATLVFMDLVAAPAGAVEIKGERYEKMKNYIVDTGYG 245

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--------------------- 268
           LER           YD  +F  L++    + G+++  ++                     
Sbjct: 246 LERFVWASNGAPTIYDA-IFPDLVRQVADLAGVEHNLDDPEYAEIFAQNARLAGMVDLDE 304

Query: 269 ---------------------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
                                      +     +VDH R  ++++ DGI+P+N   GY+ 
Sbjct: 305 YSMSDLRAKIAGSIGIDPGRLEKAILPMERVYAVVDHTRCLAYMLGDGIIPSNVKGGYLS 364

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++RR +   + LG   PL               YP+  ++   I + L  E++++ +T
Sbjct: 365 RLVIRRTLRLMKELGLRLPLAD---LVQLQISRLDYPDWEESFATIRDILDQEEQKYAET 421

Query: 362 LDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           L++G+ L+       L K+E +       LYDTHG+P +I ++     G       +F  
Sbjct: 422 LEKGMRLVRKTAESYLKKNEPVPLSEMIALYDTHGIPPEIAREAAVQMGAQVELPDNFYS 481

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + ++  RA                       G T+ + Y+     +F            
Sbjct: 482 LVAKKHIRAEPEEEKKPP------------IPGKTELLFYENPFEQEF------------ 517

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V  +V             +   + D+T  Y E GGQ  D G    DG  
Sbjct: 518 --------EAEVLDVV-------------EGAAILDRTLLYPEGGGQPADHGTLEKDGQL 556

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            Q+TDVQK  +   V H + E G L     +   +D   R   + +H+ATHL+H +   +
Sbjct: 557 FQVTDVQKSGD--VVLHKLAEPGCLAKGDRVKGKVDMLRRLAHARHHTATHLVHDSAKRV 614

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H+ Q G+  + D  R D++H K IT AELK+IE   N  + + +PV T+ + R +A 
Sbjct: 615 LGKHIWQAGAQKSEDRARLDISHFKRITDAELKAIELEANRRVMELVPVDTQFLPRTEAE 674

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                      Y   V    +            C GTHV++TG I ++ I+    ++ G+
Sbjct: 675 KLFGF----ELYQGGVPPGKLIRVVRVGSDIEACAGTHVTNTGMIGMIKILRAERVQDGV 730

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E   G+ A      +D+ L   A  L+V    +    E  +EE+++ Q    + K  
Sbjct: 731 ERVEFAAGEAAVRASQARDDLLAGAAGILRVPNEQLPRTAERFFEEWKEQQKEIERLKED 790

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L    L         I  +  +   +   D  E   ++ A     +   + L+G    K 
Sbjct: 791 LAAARLKTLVSEAETIDGLRVIVQKMGNADIDE---LLKAAALLAEEDCVALLGSKTGK- 846

Query: 836 ASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
             ++  V +  L     A  + + +AKVLGGGG GGRP +AQ GGP+  + ++A+A    
Sbjct: 847 --LVAAVGQSGLSKGVKAGSIIKAAAKVLGGGG-GGRPQLAQGGGPDTERLEEALAAGKE 903

Query: 895 FLK 897
            ++
Sbjct: 904 AIR 906


>gi|312373153|gb|EFR20960.1| hypothetical protein AND_18235 [Anopheles darlingi]
          Length = 998

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 235/1006 (23%), Positives = 405/1006 (40%), Gaps = 169/1006 (16%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + + IR  F+++F  K+ H L+ SSSL+P +D T+ F N+GM  FKN+F G         
Sbjct: 38  SANEIRRQFIDYFTIKHNHRLIRSSSLVPFSDGTIAFVNAGMNQFKNVFLGTADRPCPRA 97

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHNDL  VG  + HHTFFEMLGN+SFG YFK  A ++A DLL   + +D
Sbjct: 98  VNSQKCVRVGGKHNDLSVVGTDSYHHTFFEMLGNWSFGDYFKREACEMACDLLRTVYHID 157

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y+T +          DEE   +W  + G+  ++++     DNFW M  +GPCGPC+
Sbjct: 158 MERVYVTYFGGDARLNLPADEECRDIWLSL-GIPRERVLPFGARDNFWEMGNSGPCGPCT 216

Query: 174 EIFFDQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE---RFILPKMSIDTG 227
           EI  D  +            +       EIWN+VF+Q+ +  + +      LP+  +DTG
Sbjct: 217 EIHLDLSDQYRDTGSRRQYVNAGLPDLTEIWNIVFIQYNRSLEGDGGAIRNLPQRHVDTG 276

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287
           MGLER+   LQ K +NYD DLF  ++Q  +QV        +I                  
Sbjct: 277 MGLERLVAHLQGKLSNYDTDLFTPILQRIQQVQIAGTHRWHIH----------------- 319

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
                      + LRR++R+++  A        L+   +P +   +G  YPE+      +
Sbjct: 320 -----HIIPICHKLRRVIRKSLALASGTFERPKLLEETIPVVVETLGEMYPEMGNNLSTV 374

Query: 348 EETLRSEDERFGK----------TLDRGLVLLDG-----------VLSHLGKDEI--LNG 384
            + +  E   + K          TL +    L+             +  L +  +  L+G
Sbjct: 375 LQIIEHEQHSYDKLCSKRSAETATLLKCYPQLEESEVLDHAGLPGAIKELVESNVSRLDG 434

Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGI--DIISFNQALEEQRSRARAHSLGLGSGTTE 442
               K+YDT+GL  +++  +      +    D   +   L+       A  L       +
Sbjct: 435 VKIHKMYDTYGLDEELLVKLGEMLKFSLDFRDYERYAGELKHGFKHELASRLEERLSAFQ 494

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
           ++  S++             L  ++  ++       +  I      S+ V  ++      
Sbjct: 495 QLRDSIEGA----------QLEATRCERKYNYAYNAEKRIYEVAPCSTRVSLLLDD---- 540

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIV 560
               +     VV +++ FY E+GGQ  DTG  I       ++IT V      I    A  
Sbjct: 541 ---PARDLWHVVTERSNFYCESGGQQSDTGRLILPEGNVSIEITSVNDHNGFIVHSIAKQ 597

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L     + L +D   R  L++NH+ATHLL+  +  ++   + Q  S +T  GLR +
Sbjct: 598 PNIRLSIGDPVELQVDASRRTSLTLNHTATHLLNAIVRKVVPLPMCQRSSSVTEKGLRLE 657

Query: 621 VTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRV 678
           +  S   +T  ++ +IE  +  +I +N PV  ++ N  +   +    + G  Y +R +RV
Sbjct: 658 LAISGDKLTLEQIAAIESEIRSVIDRNEPVSVKVCNATELDLTSVTIVPGETYPERGLRV 717

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +S+     G  S  LC GTH + TGE+    I S +  + G     A+ G  A+   +  
Sbjct: 718 ISIGG---GYTSQELCCGTHATGTGELQDFAITSVTQSKNGCFTFHAVAGPAAKKVHLLG 774

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS---------CH 789
            +    +A   + ++ N      E  E+   ++    + K  L     +           
Sbjct: 775 TQIQNDVAQLQQDAEQN------EGQEDITIIETRLQRLKSVLLTGTDNNMHLPYCVRQR 828

Query: 790 KIADVNFMSHIISEVDSKELKSVMD-ALQKKIQ----------------SGIIML----- 827
            +  ++ +   + +   + L+ ++D  ++  ++                   I+L     
Sbjct: 829 CLEVISTLYQKLKDRSRESLRELVDIEMRNLMEQRPANRDEHRFIVHFLECSIILDEVQL 888

Query: 828 --VGISKEKKASVLIVVTEDLLD------------RFNAVDLARLSAKVLGGGGGGGRPH 873
                    +  ++I +T++ +             RFNA     L A+            
Sbjct: 889 SKATRYCSDRPILVISITDNQVKARATVPPAFINDRFNAQSWLALVAQEFN--------- 939

Query: 874 MAQS----GGPNGNK-----------------ADQAIAGVASFLKK 898
            AQ      G N  +                  + A+     F ++
Sbjct: 940 -AQGPAAPKGQNPAEVCNMKARKVTKAHFETMLENALRVAERFAEE 984


>gi|315231477|ref|YP_004071913.1| alanyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315184505|gb|ADT84690.1| alanyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 911

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/964 (21%), Positives = 383/964 (39%), Gaps = 182/964 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVYQAV 61
            +  +R  FL FF+++GH  +    ++P     ++   + ++ F+    +G+  P    +
Sbjct: 58  TLEEMREAFLSFFERHGHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++  TK
Sbjct: 118 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           +  +                                 IT  +N W+    G  GP  E+ 
Sbjct: 174 DLKMKPED-----------------------------ITFKENPWAGG--GNAGPAFEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------------RFILPKMSI 224
           +                  R +E+  LVFMQ++                     +    +
Sbjct: 203 Y------------------RGLEVATLVFMQYKLAPPGTPDDQVVIIKGDRYVPMDTKVV 244

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHL-------------------------IQASEQV 259
           DTG GLER+  + Q     YD  L   +                         +   E +
Sbjct: 245 DTGYGLERLVWMSQGTPTAYDAVLGYVVEPLKRMAGIEKIDDRILMENSRLAGMFDIEDM 304

Query: 260 TGMKYEGNNIVN------------------HRVIVDHLRSSSFLIADGILPANEGRGYVL 301
             +K     +                       I DH ++ +F++ADG++P+N   GY+ 
Sbjct: 305 GDLKVLRREVAGRVGISVEELERLIRPYELIYAIADHTKALTFMLADGVVPSNVKAGYLA 364

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++R+++ + R LG   PL   ++      +   +PE  + + +I + +  E++R+ +T
Sbjct: 365 RLLIRKSIRHLRELGLQIPLS-EIVAMHIKALHKTFPEFKEMEDVILDIVNVEEKRYQET 423

Query: 362 LDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L RG  L+   +  L K+    +  +     Y++HGL  +I+++I    G+      +F 
Sbjct: 424 LKRGSDLVRREIKKLRKEGKDEIPLEKLILFYESHGLTPEIVKEIAEKEGIKVHIPDNFY 483

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +      A  +       + + F L      T+ + Y+     +F           
Sbjct: 484 SLVAK-----EAEKMAKEEKEEKIVDFELVRDLPDTRTLYYEDPFMKEF----------- 527

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  ++                VV D+T FY E GGQ  DTG   G  +
Sbjct: 528 ---------DAKVLKVIDD-------------WVVLDKTAFYPEGGGQPYDTGELNGVEV 565

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
                  +       + H + + G  +  M++   ID++ R Q   +H+ TH+L  AL  
Sbjct: 566 LEVQKVGK------VILHRVKDPGKFKEGMTVHGKIDWERRIQHMRHHTGTHVLMGALVR 619

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS ++ +  R D++H K I+  ELK IE   N I+ ++  V    + R +A
Sbjct: 620 VLGKHVWQAGSQLSTEWARLDISHYKRISEEELKEIERLANRIVMEDRKVAWEWLPRTEA 679

Query: 660 IASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L          +R++++E  D        CGGTH+ STG I  + I+    I+
Sbjct: 680 EQKYGFRLYQGGVVPGRIIRILNIEDWD-----VQACGGTHLPSTGLIGPIKILRTERIQ 734

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G+ RI    G+ A      + + +K  +   +V    +    E+ +EE+++ +    K 
Sbjct: 735 DGVERIIFACGEAAIKEWQRERDIIKKTSEVFRVPPEKLPETAEKFFEEWKQARKEVEKL 794

Query: 778 KLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L        +    KI ++ F+  ++   D   L+     L+K     +  L+    
Sbjct: 795 KKELAKLLVYELENKVEKIGEIEFIGEVVEG-DLDHLREAALKLKK--PKRVTALISEDT 851

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
               +V++ V +++   F A +L R+   + GGGG GG+  +AQ    +  KA +A+  +
Sbjct: 852 N---AVVVAVGDEVP--FKAGELIRIITSIAGGGG-GGKKDLAQGKIKDVRKAREALEEL 905

Query: 893 ASFL 896
              L
Sbjct: 906 RKRL 909


>gi|242399787|ref|YP_002995212.1| Alanyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|242266181|gb|ACS90863.1| Alanyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 911

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 207/964 (21%), Positives = 376/964 (39%), Gaps = 182/964 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVYQAV 61
            +  +R  FL +F++  H  +    ++P     ++   + ++ F+    +G+  P    +
Sbjct: 60  TLEEMREAFLSYFERKNHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++ A++  TK
Sbjct: 120 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVEYAYEFFTK 175

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           +  +                                 IT  +N W+    G  GP  E+ 
Sbjct: 176 DLGMKGED-----------------------------ITFKENPWAGG--GNAGPAFEVL 204

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------------QQNKQERFILPKMSI 224
           +                  R +E+  LVFMQ++            +    +   +    +
Sbjct: 205 Y------------------RGLEVATLVFMQYKLAPPDADPSQIVEIKGDKYVPMDTRVV 246

Query: 225 DTGMGLERMATVLQEKTNNYDIDL------------------------------------ 248
           DTG GLER+  + Q     YD  L                                    
Sbjct: 247 DTGYGLERLVWMSQGTPTAYDAVLGYVVKPLKRMAGIDKIDDRILMENSRLAGMFDIEDM 306

Query: 249 --FKHLIQASEQVTGMKYEGNN-----IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
              + L +   +   M  +              I DH ++ +F++ADG++P+N   GY+ 
Sbjct: 307 GDLRVLRETVAKNVDMAPDELTRLVRPYELIYAIADHTKALTFMLADGVVPSNAKAGYLA 366

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++R+++ + R LG   PL   ++     E+   +PE  + + ++ + +  E+ ++  T
Sbjct: 367 RLLIRKSIRHLRELGLQIPLS-EIVAMHIKELHKTFPEFKEMEDVVIDMVNVEERKYADT 425

Query: 362 LDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           LDRG  L+   +  L K  +  L  +     Y++HGL  +I+++I    G+      +F 
Sbjct: 426 LDRGNDLVRREIERLKKQGVGELPLERLMLFYESHGLTPEIVKEIAEKEGMTVRIPDNFY 485

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +      A          + + F L +    T+ + Y+     +F           
Sbjct: 486 SLVAK-----EAEKGIKEEEEKKIVDFELVQDLPDTRTLYYEEPLMKEF----------- 529

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I++               VV D T FY E GGQ  D G   G  +
Sbjct: 530 ---------DAKVVGIIED-------------WVVLDATAFYPEGGGQPCDLGELNGVEV 567

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
                 +  +  G  + H + E    +    +   I+++ R Q   +H+ TH+L  AL  
Sbjct: 568 ------LDVQKVGKIILHKVKEPEKFKERGIVHGKINWERRIQHMRHHTGTHVLMGALVR 621

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS ++ D  R D+ H K ++  ELK IE   N I+ ++  V    + R +A
Sbjct: 622 VLGKHVWQAGSQLSTDWARLDIAHYKRVSEEELKEIELLANRIVMEDREVKWEWLPRTEA 681

Query: 660 IASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L          +RV++++  D        CGGTH+  TG I  + I+    I+
Sbjct: 682 EQRYGFRLYQGGVVPGRVIRVLNIKDWD-----VQACGGTHLPRTGLIGPIKILRTERIQ 736

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G+ RI    G+ A      + E +   +   +V    +       +EE+++ +    K 
Sbjct: 737 DGVERIIFACGEAAIKEWQKEREIISKTSEVFRVPLEKLPETAGRFFEEWKQARKEVEKL 796

Query: 778 KLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             +L        +    KI ++ F+  ++   +   L+     L+K   + I+ L+    
Sbjct: 797 NKELAKLLVYELENRVEKIGEIEFIGAVVEG-EIDHLREAALKLKK--SNRIVALISEES 853

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
               +V++ V EDL   + A DL R+  +V GGGG GG+  +AQ    N  KA +A+  +
Sbjct: 854 N---AVVVTVGEDL--NYKAGDLIRIITRVAGGGG-GGKKDLAQGKIKNILKAKEALEEL 907

Query: 893 ASFL 896
              L
Sbjct: 908 KKAL 911


>gi|47213378|emb|CAF93331.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1043

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 167/429 (38%), Positives = 237/429 (55%), Gaps = 25/429 (5%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60
           +R+TF++FFQ K+GH L+PSS + P  DP+L+F N+GM  FK +  G   P      Y+ 
Sbjct: 30  VRSTFVDFFQQKHGHVLVPSSPVRPRGDPSLLFVNAGMNQFKPLLLGTADPRSAMARYRR 89

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKCVRAGGKHNDL++VGR   HHTFFEMLG +SFG YFK  A  +AW LLT+ + +
Sbjct: 90  VVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGTWSFGDYFK-EACLMAWSLLTEHYGI 148

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY++ +          DEE   +W    G+  D+++     DNFW M ++GPCGPC
Sbjct: 149 AAERLYVSYFGGDTASGLPADEETRHIWLD-IGVPHDRLLPFGLKDNFWEMGDSGPCGPC 207

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI +D            + +    +EIWNLVFMQ+ ++      +LP++S+DTGMGLER
Sbjct: 208 TEIHYDHVGGRRAAA-LVNADHPDLVEIWNLVFMQYNRELDGSLRLLPQLSVDTGMGLER 266

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------IVNHRVIVDHLRSSSFLI 286
           +  VLQ K +NYD DLF  L+ A +Q                 V +RV+ DH+R+ +  I
Sbjct: 267 LVRVLQGKRSNYDTDLFAPLLLAIQQAGPYGGGVGPAGAGRVDVAYRVVADHVRALAVCI 326

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG+ P   G   VLRRI+RRA+ +    L      +  L+P +C  +G AYPEL +   
Sbjct: 327 ADGVYPGMSGAELVLRRILRRAVRFCSEVLQAPPGTLASLVPTVCHILGDAYPELHKEAD 386

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDI 404
            I   +   +  F  +L RG  L+   L      + +    VA+ L+   G PLD++  +
Sbjct: 387 TIVNIINENEAHFLSSLQRGSRLIQHTLRKQDDKDGVFPAAVAWSLHRDLGFPLDLVDLM 446

Query: 405 LCARGLAGI 413
           L  RG    
Sbjct: 447 LEERGFRVD 455



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 17/191 (8%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                     +   V      +R    + H+ THLL+ AL  +LG  V Q GS ++    
Sbjct: 646 GGWVPKETGGDQLWVPLTPQVHRLACMVKHTGTHLLNFALRKVLGPSVQQRGSHVSAHPP 705

Query: 618 RFDVTHSKPITSA---------ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
              +      +           EL+ ++  V DII+ +  V ++ +  + A +      +
Sbjct: 706 ALGLQRPAAESCCVPQAALSVRELQEVDALVRDIISADQQVHSQEVPLQTARSIRGLRTV 765

Query: 669 GTKYNDRVRVVS--------VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
              Y D VRVVS        ++ +  G  S  LC GTH+  TG I  L IVSE  +  G+
Sbjct: 766 DEVYPDPVRVVSVGVPVSDLLDGQSDGQTSVELCCGTHLLRTGAIRDLVIVSERQVVKGM 825

Query: 721 RRIEAITGQRA 731
            RI A+TGQ A
Sbjct: 826 SRILAVTGQDA 836


>gi|327400660|ref|YP_004341499.1| alanyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
 gi|327316168|gb|AEA46784.1| alanyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
          Length = 903

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/965 (22%), Positives = 374/965 (38%), Gaps = 193/965 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N+  +R  +L FF+K GH  +    ++      +  T + +  F+   T G   P    +
Sbjct: 60  NLDEMREYYLSFFEKRGHARIDRYPVVARWRDDIYLTIASIADFQPFVTSGVAPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     +DLD+VGRT RH T FEM+ + +F       Y+K   ++L  +LL +
Sbjct: 120 TISQPCIRM----DDLDSVGRTGRHLTLFEMMAHHAFNYPEKEIYWKNETVKLCTELL-E 174

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  + +  +                                +  W+    G  GPC E  
Sbjct: 175 ELGVPKENVI-----------------------------YKEEPWAGG--GNAGPCLE-- 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMG 229
                 I GG           +E+  LVFM  E     +  I       +    +DTG G
Sbjct: 202 -----AIVGG-----------LELATLVFMNLEVSPDGDIEIKGERYRKMDNYIVDTGYG 245

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVI-------------- 275
           LER     Q     YD  +F  ++   E+ + + +   +    R+I              
Sbjct: 246 LERFVWASQGTPTVYDA-IFPEVLDFIEENSNISFSRKDEEVRRIIAESSKLAGVMSSLR 304

Query: 276 -----------------------------------VDHLRSSSFLIADGILPANEGRGYV 300
                                               DH R+  F++ DG++P+N G GY+
Sbjct: 305 GKALEEFRLNAANRLGISVDELVSIVSPLEKVYALADHTRTILFMLGDGLIPSNAGGGYL 364

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR++  A  L  +  L   L+      +     E+      I+E L  E++R+  
Sbjct: 365 ARLMIRRSLRLAEELNLSATL-FDLVELHRRLLKPFTFEI--PMETIQEILELEEKRYRA 421

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           T+++GL +++ V++   +   +  D   + YD+HG+P +++  I   +G+       F  
Sbjct: 422 TIEKGLRMVERVVAKKKR---IEKDDLIEFYDSHGIPAELVAKIAEEKGVEVEMPEDFYA 478

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            L  +  +A           T          Y  T+ + YD                   
Sbjct: 479 ELASRHVKAEKKEEEKKLKGT----------YPPTEKLYYD------------------- 509

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V  +            G+   V+ D+T FY E+GGQ  DTG  I +  +
Sbjct: 510 --SSVLEFEAEVIGV-----------EGE--YVILDRTAFYPESGGQDNDTGYFIVNSTK 554

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           + + DV ++   +        +G L     +   ID   R + + +HSATHLL +A+  +
Sbjct: 555 IPVVDVFEENGVVVHKI----KGSLSAGTKVKGIIDRGRRLRHTRHHSATHLLLYAIQQV 610

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H  Q+G+    +  R DVTH K  +  E+  IE   N  +  N PV    M+R +A 
Sbjct: 611 LGKHAWQSGARKEWEKARLDVTHYKRPSEEEIYEIERIANREVMANKPVTWEWMDRIEAE 670

Query: 661 ASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                 L          +RVV V            CGGTH SSTGEI ++ I+   SI+ 
Sbjct: 671 RRYGFRLYQGGVPPGREIRVVRVGD------DVQACGGTHCSSTGEIGVIKILKVESIQD 724

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR- 777
           G+ R E   G+ A   +   +  LK  +  L+V    +   V+  ++E+++ +    +  
Sbjct: 725 GVIRFEFAAGEAALEQIAKNEALLKEASRILRVEPTILPKTVQRFFDEWKEQKKEIERLL 784

Query: 778 ----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
               +L+         +   +  ++ +I +    EL  +   L      G +  +   +E
Sbjct: 785 AEIARLKAESLAEKAEEFDSIKVVAEVI-DAPMNELVKIGSELANL---GCVGSLMSQRE 840

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
                   VT   +D  +A +L +   + +  G GGG+P++AQ  G      D+ +  + 
Sbjct: 841 GVRL----VTFSGVDGIDARELIKEIGRHIK-GSGGGKPNLAQGAGQRALTRDELMDIIF 895

Query: 894 SFLKK 898
           +FL++
Sbjct: 896 TFLRQ 900


>gi|22096191|sp|Q8TWY1|SYA_METKA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 915

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 216/956 (22%), Positives = 385/956 (40%), Gaps = 178/956 (18%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQKC 67
             F  FF+++ HE+L    ++      +  T + +  F+   T G+  P    +   Q C
Sbjct: 66  EEFFRFFERHDHEVLDRYPVVARWRDDIHLTIASIACFQPWVTSGEVPPPANPLVINQPC 125

Query: 68  VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG--------YFKERAIQLAWDLLTKEFD 119
           +R     ND+DNVGRT RH T F M G+ +F          Y+KE  ++L ++   ++  
Sbjct: 126 IRL----NDIDNVGRTGRHFTLFHMGGHHAFNNHPHDRRDIYWKEETVRLCYEFTVEKLG 181

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + + +                             I   +++W     G  GPC E+  D 
Sbjct: 182 IPEEK-----------------------------IAFKESWWEGG--GNAGPCFEVVVD- 209

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                             +E+  LVFMQ+EQ    E   LP+  +DTG G+ER A +   
Sbjct: 210 -----------------GLELATLVFMQYEQ-VGGEYRELPQKIVDTGYGIERYAWITTG 251

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE------------------GNNIVNHRV------- 274
           +   YD  +F  L+ A+ +  G++ +                       + RV       
Sbjct: 252 EPTAYDA-VFGDLVDATARDLGVEIDGEAREILGELARVAGLMDVETESDLRVLRNRVAR 310

Query: 275 ---------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                                I+DH R  +F++ DG++P+N G GY+ R ++RRA+    
Sbjct: 311 RLDLDVNELVRVAEPVEFVYGILDHARCLAFMLGDGVVPSNAGEGYLARLVIRRALRLLD 370

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
            L      ++ ++  +  ++   YPEL + +  I++ L  E +R+ + L RG   +   L
Sbjct: 371 GLDAEREYLLEVVERVLEDLRGTYPELAEREEYIQDALECEIDRYTRALKRGKKEVRKRL 430

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
              G+   L+ +   +LYD+HG+P ++ ++I    G+       F   + E+        
Sbjct: 431 EEKGE---LSFEDLVELYDSHGIPPEVAREIAEDEGVEVEVPDDFYSRVAERHEGPEEVE 487

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
            GL          +++E+   T+   YD  +  +F                         
Sbjct: 488 EGLEELER----IAVEEELPETELAFYDDEKRLEFKA----------------------- 520

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
                 E++          VV D+T FY E GGQ  D G         ++ DVQK    +
Sbjct: 521 ------EVIGTYEVNGDAWVVLDRTYFYPEGGGQEADRGTMRWKDGEAEVKDVQKVRGVV 574

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           F      +  +      +   +D + R +L+ NH+ATH++  A   +LG HV Q G+  +
Sbjct: 575 FHRI---DGDVPPEGAEVECEVDGERRMRLTRNHTATHVILEAARRVLGDHVWQAGAHKS 631

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TK 671
            D  R DVTH + I+  EL+ IE   N+I+ ++LPV  R M+R +A       L      
Sbjct: 632 TDEARLDVTHHRRISDEELREIERLANEIVMKDLPVNKRFMDRNEAERRYGFELYQGGVV 691

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               +RVV +E  +        C GTH  STGEI  + IV    I+ G+ RI    G+ A
Sbjct: 692 PGREIRVVEIEGWN-----VQACAGTHCDSTGEIGPIKIVGRERIQDGVERIRFAAGEAA 746

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC--- 788
              +   ++ L+     L+V+  N+   V+  +EE+++ +    + + +L    L     
Sbjct: 747 LERIWETEDLLRETCEVLRVNPENLPKTVKRFFEEWKEQRKRIERLERELVEAKLRAAPA 806

Query: 789 --HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
              ++ D       + +V+   +   ++ L K+ ++ ++++  I       V++   E  
Sbjct: 807 EGRRVGDFTVTLVELEDVEVGSVAGTVEELVKEHEN-LVLVAKIVSNGSCQVVVGSGESA 865

Query: 847 LDRFNAVDLARLSAKVL-----GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                A +L R   K++     G         +AQ GG N +   +    +   ++
Sbjct: 866 PP---AGELMREIGKLIEGGGGGDER------LAQGGGRNPDGLTE--DRLVEIVE 910


>gi|20094336|ref|NP_614183.1| alanyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|19887392|gb|AAM02113.1| Alanyl-tRNA synthetase [Methanopyrus kandleri AV19]
          Length = 918

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 216/956 (22%), Positives = 385/956 (40%), Gaps = 178/956 (18%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQKC 67
             F  FF+++ HE+L    ++      +  T + +  F+   T G+  P    +   Q C
Sbjct: 69  EEFFRFFERHDHEVLDRYPVVARWRDDIHLTIASIACFQPWVTSGEVPPPANPLVINQPC 128

Query: 68  VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG--------YFKERAIQLAWDLLTKEFD 119
           +R     ND+DNVGRT RH T F M G+ +F          Y+KE  ++L ++   ++  
Sbjct: 129 IRL----NDIDNVGRTGRHFTLFHMGGHHAFNNHPHDRRDIYWKEETVRLCYEFTVEKLG 184

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + + +                             I   +++W     G  GPC E+  D 
Sbjct: 185 IPEEK-----------------------------IAFKESWWEGG--GNAGPCFEVVVD- 212

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                             +E+  LVFMQ+EQ    E   LP+  +DTG G+ER A +   
Sbjct: 213 -----------------GLELATLVFMQYEQ-VGGEYRELPQKIVDTGYGIERYAWITTG 254

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE------------------GNNIVNHRV------- 274
           +   YD  +F  L+ A+ +  G++ +                       + RV       
Sbjct: 255 EPTAYDA-VFGDLVDATARDLGVEIDGEAREILGELARVAGLMDVETESDLRVLRNRVAR 313

Query: 275 ---------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                                I+DH R  +F++ DG++P+N G GY+ R ++RRA+    
Sbjct: 314 RLDLDVNELVRVAEPVEFVYGILDHARCLAFMLGDGVVPSNAGEGYLARLVIRRALRLLD 373

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
            L      ++ ++  +  ++   YPEL + +  I++ L  E +R+ + L RG   +   L
Sbjct: 374 GLDAEREYLLEVVERVLEDLRGTYPELAEREEYIQDALECEIDRYTRALKRGKKEVRKRL 433

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
              G+   L+ +   +LYD+HG+P ++ ++I    G+       F   + E+        
Sbjct: 434 EEKGE---LSFEDLVELYDSHGIPPEVAREIAEDEGVEVEVPDDFYSRVAERHEGPEEVE 490

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
            GL          +++E+   T+   YD  +  +F                         
Sbjct: 491 EGLEELER----IAVEEELPETELAFYDDEKRLEFKA----------------------- 523

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
                 E++          VV D+T FY E GGQ  D G         ++ DVQK    +
Sbjct: 524 ------EVIGTYEVNGDAWVVLDRTYFYPEGGGQEADRGTMRWKDGEAEVKDVQKVRGVV 577

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           F      +  +      +   +D + R +L+ NH+ATH++  A   +LG HV Q G+  +
Sbjct: 578 FHRI---DGDVPPEGAEVECEVDGERRMRLTRNHTATHVILEAARRVLGDHVWQAGAHKS 634

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TK 671
            D  R DVTH + I+  EL+ IE   N+I+ ++LPV  R M+R +A       L      
Sbjct: 635 TDEARLDVTHHRRISDEELREIERLANEIVMKDLPVNKRFMDRNEAERRYGFELYQGGVV 694

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               +RVV +E  +        C GTH  STGEI  + IV    I+ G+ RI    G+ A
Sbjct: 695 PGREIRVVEIEGWN-----VQACAGTHCDSTGEIGPIKIVGRERIQDGVERIRFAAGEAA 749

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC--- 788
              +   ++ L+     L+V+  N+   V+  +EE+++ +    + + +L    L     
Sbjct: 750 LERIWETEDLLRETCEVLRVNPENLPKTVKRFFEEWKEQRKRIERLERELVEAKLRAAPA 809

Query: 789 --HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
              ++ D       + +V+   +   ++ L K+ ++ ++++  I       V++   E  
Sbjct: 810 EGRRVGDFTVTLVELEDVEVGSVAGTVEELVKEHEN-LVLVAKIVSNGSCQVVVGSGESA 868

Query: 847 LDRFNAVDLARLSAKVL-----GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                A +L R   K++     G         +AQ GG N +   +    +   ++
Sbjct: 869 PP---AGELMREIGKLIEGGGGGDER------LAQGGGRNPDGLTE--DRLVEIVE 913


>gi|292654386|ref|YP_003534283.1| alanyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291372225|gb|ADE04452.1| alanyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 922

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 225/968 (23%), Positives = 381/968 (39%), Gaps = 184/968 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
            +  +R  FL FF+++ HE +    +        ++ T + +  F+ + T G+  P    
Sbjct: 61  TLEEMREKFLSFFEEHDHERIDPYPVAANRWRDDVLLTQASIYDFQPLVTSGETPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQ-LAWDLLTKEFD 119
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F    +E A    A++       
Sbjct: 121 LTVSQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNA--REEAGDKYAYE------- 167

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
                    VY +DE      +    L AD I  IT  ++ W     G  GP  E+ +  
Sbjct: 168 -------GEVYWKDETVRLCDEFFESLGAD-ISEITYIEDPWVGG--GNAGPAFEVLY-- 215

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--------ILPKMSIDTGMGLE 231
                           R  E+  LVFM  +Q    +           +    +DTG GLE
Sbjct: 216 ----------------RGAELATLVFMSMKQDPDGDYELKDGNTYSPMDTYIVDTGYGLE 259

Query: 232 RMATVLQEKTNNYD------------------IDLFKHLIQASEQVTGMKYEGNNIV--- 270
           R   V Q     Y+                   D  + LI  + +++G            
Sbjct: 260 RWTWVSQGTPTVYEAVYPDMIEFLKDNVGIEHTDEEEELIHRAAKLSGHLDIDEIDDLAT 319

Query: 271 ------------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
                                   +   I DH R+ +++  DGI+P+N G GY+ R ++R
Sbjct: 320 ARAEVAGELGVDEAELTSLLRPLEDIYAIADHCRTLAYMFGDGIVPSNVGTGYLARMVLR 379

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK--LLIEETLRSEDERFGKTLDR 364
           R       LG   PL          E+     E +  +    I + +RSE+ ++ KTL+R
Sbjct: 380 RTKRLVDNLGVDAPL---------DELVDMQAERLDYQNRDTIRDIVRSEERKYRKTLER 430

Query: 365 GLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           G   +  +       DE +  D   +LYD+HG+  D++QDI   RG        F   + 
Sbjct: 431 GSRKVQQLADDYADTDEPIPLDELIELYDSHGIQPDMVQDIAEERGATVDIPDDFYSLVA 490

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           ++  +        G G  ++    L +   AT  + YD    ++F               
Sbjct: 491 DRHEQ------VDGEGEADERDDRLGD-LPATDKLYYDDQERTEF--------------- 528

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 ++V  + ++ E           +VV DQT FY E GGQ  D G    D   +++
Sbjct: 529 -----EAVVLDVFEREE---------GYDVVLDQTMFYPEGGGQPADHGSLATDDTTVEV 574

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           TDVQ   + + +H    + G       +   +D + RR+L  +H+ATH++ HA+ T+LG 
Sbjct: 575 TDVQIVGD-VVLHRTDEDPG---KGEFVRGQLDAERRRRLMRHHTATHVIGHAIRTVLGD 630

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H+ Q G+    D  R DVTH   IT  E+  IE   N+I+ +N+PV     +R DA    
Sbjct: 631 HIRQAGASKGVDRSRLDVTHYDRITREEVTQIERVANEIVMRNIPVKQEWPDRRDAEKKY 690

Query: 664 AAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              L        +++R++ V            CGGTHV  TG+I  + +++   ++ G+ 
Sbjct: 691 GFDLYQGGIPPGEQIRLIHVGS------DVQACGGTHVKRTGDIGAVKVLTTEPVQDGVE 744

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R+    G  A       ++ L   A  L V+  +V    E  + E+++      + K +L
Sbjct: 745 RVVFAAGDAAVEATQRTEDALYGAADVLDVNPADVPETAERFFTEWKERGKTIDRLKTEL 804

Query: 782 NVEDLSCH----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
                +       I     +   +   D+ EL++  +AL   ++ G + ++G +    A 
Sbjct: 805 AEARAAAGADEIDIDGTPAVVQRLDG-DADELRATANAL---VEEGKVAVLGSAAGGSAQ 860

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGGPNGNKADQAI 889
            ++ V +D+    NA  +    A         G+           AQ GGP+ +  D A+
Sbjct: 861 FVVGVPDDV--GINAGQVVGRLA---------GKVGGGGGGPADFAQGGGPDVDALDGAL 909

Query: 890 AGVASFLK 897
                 L+
Sbjct: 910 DEAPDVLR 917


>gi|313124848|ref|YP_004035112.1| alanyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312291213|gb|ADQ65673.1| alanyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 922

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 213/980 (21%), Positives = 378/980 (38%), Gaps = 206/980 (21%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
            +  +R  FL FF+++ HE +    +        ++ T + +  F+ + T GQ  P    
Sbjct: 61  TIEEMREEFLSFFEEHDHERIEPYPVAANRWRDDVLLTQASIYDFQPLVTSGQTPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG--------------YFKERA 106
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F                Y+K+R 
Sbjct: 121 LTISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNAREEVDDQYAYSGEVYWKDRT 176

Query: 107 IQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           ++L  +                             +  G   ++I  I   ++ W     
Sbjct: 177 VELCDEFF---------------------------EHMGADLEEITYI---EDPWVGG-- 204

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--------I 218
           G  GP  E+ +                  +  E+  LVFM  EQ  + E           
Sbjct: 205 GNAGPAFEVLY------------------QGAELATLVFMSMEQDPEGEYEMKDGNRYSP 246

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDI---DLFKHL---------------IQASEQVT 260
           +    +DTG GLER A V Q     Y+    D+ + L               +  + +++
Sbjct: 247 MDTYIVDTGYGLERWAWVSQGTATVYEAVYPDMIQFLKENAGISLTAEEEELVHRAAKLS 306

Query: 261 GMKYEGNNIV---------------------------NHRVIVDHLRSSSFLIADGILPA 293
           G                                    +   I DH R+ +++  DGI+P+
Sbjct: 307 GYLDIDEVDDVYEARVDIADELGVDADELAELLRPLEDIYAIADHCRTLAYMFGDGIVPS 366

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK--LLIEETL 351
           N G GY+ R ++RR       +G   PL          E+     E ++ +    I + +
Sbjct: 367 NVGTGYLARMVLRRTKRLVDSVGVDAPL---------DELVDMQAERLEYQNRDTIRDIV 417

Query: 352 RSEDERFGKTLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           R+E+ ++ +TL+RG   +  +      ++E +      +LYD+HG+  D++ DI   RG 
Sbjct: 418 RTEERKYRETLERGTRKVQSLADDYADREESIPVTELIELYDSHGIQPDMVADIAEERGA 477

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
                 +F   + ++     A                       T+ + YD    ++F  
Sbjct: 478 TVDVPDNFYSLVADRHEGEGATEAAEEREER-------LADLPDTEKLYYDDQERTEF-- 528

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              ++V          +     +  +VV DQT FY E GGQ  D
Sbjct: 529 ------------------EAVVL---------DVIEREEGYDVVLDQTMFYPEGGGQPAD 561

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    D   +Q++DVQ + +G+ +H    + G       +   +D + RR+L  +H+AT
Sbjct: 562 HGTISTDDKTVQVSDVQIR-DGVVLHRTDEDPG---KGEFVRGQLDVERRRRLMRHHTAT 617

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H++ HA   +LG H+ Q G+    D  RFD+TH + IT  E+K IE   N+I+ QN+ V 
Sbjct: 618 HVVGHAARQVLGDHIRQAGAQKGTDRARFDITHYERITREEVKQIEQVANEIVMQNIAVK 677

Query: 651 TRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
               +R +A       L          +RV++V            CGGTHV  TG+I  +
Sbjct: 678 QEWPDRHEAEDKYGFDLYQGGIPPGRNIRVITVGD------DVQACGGTHVKRTGDIGSI 731

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I++   ++ GI RI    G  A       ++ L   A  L V+  +V    E  + E++
Sbjct: 732 KILTTEPVQDGIERIVFAAGDAAIEATQETEDALYEAAEVLDVNPEDVPDTAERFFTEWK 791

Query: 769 KLQLIHAKRKLQLNVEDLSCH----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           +      + K +L     +       ++    +   +   D+ EL++  +A+  + +   
Sbjct: 792 ERGKTIDRLKSELAEARAAAETEEIDVSGTPAVVQRLDG-DADELRATANAIVDEGK--- 847

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSG 878
           + ++G +    A  ++ V +++    NA ++    A  +G             P  AQ G
Sbjct: 848 VAVLGSAAGGSAQFVVGVPDNV--GINAGEVVGQLAASVGGGGGGP-------PDFAQGG 898

Query: 879 GPNGNKADQAIAGVASFLKK 898
           GPN  K D+ +      L++
Sbjct: 899 GPNVEKLDETLDEAPDVLRQ 918


>gi|298675228|ref|YP_003726978.1| alanyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298288216|gb|ADI74182.1| alanyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 922

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 218/968 (22%), Positives = 384/968 (39%), Gaps = 180/968 (18%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           ++ +R  FL+FF+K  H  +    +       +  T + +  F+   T GQ  P    +T
Sbjct: 60  LNEMREQFLKFFEKRDHARVNRYPVTAVWREDIHLTIASIANFQPFVTSGQVPPPANPLT 119

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKE 117
             Q CVR      DLD VGR+ RH T FEM+ + +F       Y+KE  + L  + L   
Sbjct: 120 ISQPCVRLS----DLDAVGRSGRHLTLFEMMAHHAFNTTDNEVYWKEETVALCDEFL-NS 174

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             +D   L +T                             +  W+    G  GPC E   
Sbjct: 175 LGVDP--LAVTY---------------------------KEEPWAGG--GNAGPCLETLV 203

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMGL 230
                               +E+  LVFM  +Q    +  I       +    +DTG GL
Sbjct: 204 ------------------GGLEVATLVFMNLKQSKDGDIIIDGEPYEKMNNYIVDTGYGL 245

Query: 231 ERMATVLQEKTNNYD-------------------------------IDLFKHLIQASEQV 259
           ER+    +     YD                                  F  L+  SE+ 
Sbjct: 246 ERLVWASKGTPTIYDAIFPSIVNELMEYAGLEHELEDSEYSELLSQNARFAGLMDVSEKA 305

Query: 260 TGMKYEGNNIVNH-----------------RVIVDHLRSSSFLIADGILPANEGRGYVLR 302
              +       +                    I DH R  +F++ DG++P+N   GY+ R
Sbjct: 306 NLKELRKQVAESIGTSIEKLTSIMEPVEKVYAIADHTRCLTFMLGDGVVPSNVKAGYLAR 365

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
            + RR     R LG  +  +  ++     ++   YPE      LIE+ ++ E+++F +TL
Sbjct: 366 LVFRRTTRMMRELGM-DISISDIIRMHIDKLQE-YPEFEDRFDLIEDIIQHEEDKFEETL 423

Query: 363 DRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           +RG+ ++  +      ++E +  D   ++YD+HG+P +I +D+    G+      +F   
Sbjct: 424 NRGIKMIQKMAKQYKKQNEKIPLDKLIEMYDSHGIPPEIAEDVASDMGVEVELPDNFYSI 483

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + E+ S A+              +     K   T+ + Y+     +F             
Sbjct: 484 VAERHSMAKEKEKPSFP------FEERISKLPQTKLLFYNEPNRMEF------------- 524

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   ++V  +                 +V D+T FY E GGQ  D G  I D    
Sbjct: 525 -------EAVVLDVFDN-------------YIVLDRTLFYPEGGGQPADKGVIIADDETA 564

Query: 542 QITDVQKKAEGIFVHH-AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           ++ DV+     +     ++     LR    +   ID + R   + +H+ATH+++ A   +
Sbjct: 565 KVVDVKNIKNVVLHEIDSVGNEISLRKGDLVTCKIDSERRASHAKHHTATHIVNDAAKKV 624

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+H+ Q G+    D  R D++H K I   E+K IE   N  + +N  VVT  +NR +A 
Sbjct: 625 LGTHIWQAGAQKFEDRARLDLSHYKRIKRDEIKRIELIANGTVMENKRVVTEWVNRNNAE 684

Query: 661 ASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                 +         ++R++ V            CGGTH S TG +  + I+    I+ 
Sbjct: 685 KRYGLNVYQGGVPPGKKLRILKVGD------DIEACGGTHCSYTGYVGPIKILKSERIQD 738

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-------LQ 771
           G+ R+E   G+ A   +   ++ L+  +  L+V   ++   +E  +EE+++       L+
Sbjct: 739 GVERLEFSAGEAAVKSMQEIEDTLQDSSGALRVLPEHLPNTIERFFEEWKQFKKENEKLK 798

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A  ++Q  ++D   H     + ++  + + DSKEL+ +   L  K  S I +L+   
Sbjct: 799 EELADIRVQQMMQDAITHD--GNHIIAQKVPDSDSKELQKMAGELV-KNNSTIALLISDY 855

Query: 832 KEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
                 +    ++D + +  N  D+ +  + ++GGGG GGRP MAQ GG   ++ D+A+ 
Sbjct: 856 NG--VKIAAAASKDAVNNGINVGDVVKEISSIVGGGG-GGRPDMAQGGGTETSRIDEALN 912

Query: 891 GVASFLKK 898
                +K+
Sbjct: 913 TGVDRIKE 920


>gi|325959974|ref|YP_004291440.1| alanyl-tRNA synthetase [Methanobacterium sp. AL-21]
 gi|325331406|gb|ADZ10468.1| alanyl-tRNA synthetase [Methanobacterium sp. AL-21]
          Length = 905

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 213/955 (22%), Positives = 377/955 (39%), Gaps = 171/955 (17%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTT 63
            I+  F +FF+  GH  +    ++       +    + +  F+   T G  +P    +  
Sbjct: 55  QIQKEFNDFFKARGHTPITRYPVLAKRWRDDVFLVGASIYDFQPWVTSGLVEPPANPLVI 114

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEF 118
            Q  +R     ND+DNVGRT RH T F M  + +F       Y+K+  ++   D +    
Sbjct: 115 AQPSIRL----NDVDNVGRTGRHMTCFTMGAHHAFNKPDDEVYWKDETVKYCHDFI---- 166

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
                                  +  G+   +I  I   +++W     G  GPC EI   
Sbjct: 167 -----------------------EHIGIDPSEITYI---ESWWEGG--GNAGPCYEI--- 195

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                            R +E+  LVF+Q++   +     +P   +DTG GLER A + Q
Sbjct: 196 ---------------CVRGVELATLVFIQYKTTAEG-LKEIPLKIVDTGYGLERFAWISQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGM------------------------------------ 262
                YD   F  +I   +++ G+                                    
Sbjct: 240 GTPTAYDAS-FGPVISQIKELAGVELNEAVLAENARIAGMMDIEDIADLKELRRRVADKL 298

Query: 263 -------KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                  K     +    VI DH R   F++ADG++P+N   GY+ R I+RR + + + L
Sbjct: 299 GITMEELKNATEPMEAVYVIADHTRCLCFMLADGVIPSNVKEGYLARLILRRTIRFMKDL 358

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G  E L   ++      +   YPE+ + K  I   +  E++R+ KT+ +G  L+   +  
Sbjct: 359 GLKESLG-DIMEIQLEFLSKTYPEIEERKQHILNVVTLEEKRYTKTVSKGKQLVKKTIQD 417

Query: 376 LGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           L K+ +  +  +   KLYD+HG+P + +++I            +F   + E+    +   
Sbjct: 418 LKKENLEEIPVETLIKLYDSHGMPPETIEEIASEENFNAAVPDNFYTLVAEEHEAEKKDK 477

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                         ++ K+  T+ + Y+  R ++F                     + + 
Sbjct: 478 KQ-----------DIEIKFIETELVFYEHSRKTEF--------------------EAGLL 506

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
              +               VV D+T FY E GGQ  D G     G + +   +  +    
Sbjct: 507 GFYENN-------------VVLDRTIFYPEGGGQPSDIGYIRVKGNKEKYNVLSVEKIQG 553

Query: 554 FVHHAIVERGI----LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            V H +    I          +  +ID + R  L+ NH+ATHL+  A   +LG HV Q G
Sbjct: 554 VVLHQMEPEDIEKLKPFAGSRITGSIDPERRTSLTQNHTATHLIVAAAREVLGDHVWQAG 613

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +       R D++H K I+  EL+ IE   N  + +N  V T  MNR  A       L  
Sbjct: 614 AQKGVKKSRIDLSHYKRISITELREIEKIANSYVMKNYQVHTSWMNRTKAEKKYGFKLYQ 673

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 V   ++            C GTHV  TGEI L+ I     I+ G+ R+E   G+
Sbjct: 674 ---GGVVPGANIRTVKIDEIDVQACAGTHVKYTGEIGLIKITRTERIQDGVERLEFSAGK 730

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--- 786
            A   +   DE LK  +   KV    +    E  ++E++  +  + K K ++    +   
Sbjct: 731 SAIDAVQRNDEILKESSEIFKVPLEQLPKTCERFFKEWKAYKNENTKLKDEIATLKVGSI 790

Query: 787 --SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT- 843
                +I+D+  ++ ++ + D  EL  ++  + + +    ++++G + E K  ++   + 
Sbjct: 791 RDLAVEISDLTVLTQLM-DADMNELIGIVTDMTEDVDGVDVVVIG-NTEGK--IVGGSSA 846

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           + L       ++ + +A +LGGGG GGRP++AQ  G N    ++A+      +++
Sbjct: 847 KALERGLKINNIIKDAAAMLGGGG-GGRPNLAQGAGKNHEMMEEALNSALKTIEE 900


>gi|149002767|ref|ZP_01827693.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147759061|gb|EDK66055.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
          Length = 449

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 182/458 (39%), Positives = 271/458 (59%), Gaps = 24/458 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  +
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIE-VGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLP-----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+GE                E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYQELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +I   E+++G  Y+ + + ++ +VI DH+RS SF I 
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIICEVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I 
Sbjct: 353 EKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
              G+  +D   F  A++EQ+ RARA ++  GS   +K
Sbjct: 413 EEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQK 449


>gi|292558550|gb|ADE31551.1| Alanyl-tRNA synthetase, class IIc [Streptococcus suis GZ1]
          Length = 512

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 180/469 (38%), Positives = 278/469 (59%), Gaps = 24/469 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGM 228
           FD+G     E I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +T+  G    + ++  L  +    ++G   FKLYDT+G  +++ +++ 
Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
             RG+  +DI  F  A++EQ+ RARA  +  GS   +   + L +K   
Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETWLLSQKSRP 460


>gi|332158554|ref|YP_004423833.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034017|gb|AEC51829.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 916

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 217/967 (22%), Positives = 388/967 (40%), Gaps = 182/967 (18%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVY 58
            +  +R  FL+FF+K+    H  +    ++P     ++   + ++ F+    +G+  P  
Sbjct: 58  TLDEMREKFLKFFEKHEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +   Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +                                 IT  +N W+    G  GP  
Sbjct: 174 FTKELKMKPED-----------------------------ITFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------------QERFILPK 221
           E+ +                  R +E+  LVFMQ+++  +            ++   +  
Sbjct: 203 EVLY------------------RGLEVATLVFMQYKKAPENAPQDQVVIIKGEKYVPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHL-------------------------IQAS 256
             +DTG GLER+  + Q     YD  L   +                         +   
Sbjct: 245 KVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLKKMAGVEKIDERILMENSRLAGMFDI 304

Query: 257 EQVTGMKYEGNNIVN------------------HRVIVDHLRSSSFLIADGILPANEGRG 298
           E +  ++Y    +                       I DH ++ +F++ADG++P+N   G
Sbjct: 305 EDLGDLRYLREQVAKRVGISVEELEKAVRPYELIYAIADHTKALTFMLADGVVPSNVKAG 364

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+ R ++R+++ + R LG   PL   ++     E+   +PE  + + +I E +  E++++
Sbjct: 365 YLARLLIRKSLRHLRELGLEVPL-AEIVAMHIKELHKTFPEFKEMEDIILEMIELEEKKY 423

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL RG  L+   ++ L K  +  +  +     Y++HGL  +I+++I    G+      
Sbjct: 424 AETLRRGSDLVKREVAKLKKKGVKEIPLEKLVMFYESHGLTPEIVKEIAEKEGIEVNIPD 483

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F   + +      A          E + F L +    T+ + Y+     +F     KV+
Sbjct: 484 NFYSIVAK-----EAEKGREEEEEKEIVDFELVKDLQETRTLYYEDPFMKEFTARVIKVI 538

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                                               VV D+T FY E GGQ  DTG  + 
Sbjct: 539 GD---------------------------------WVVLDRTAFYPEGGGQPYDTGVLLV 565

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG  +++T+VQK      + H + +  + R  + +   ID+  R Q   +H+ TH+L  A
Sbjct: 566 DGTEVKVTNVQKVGR--VILHKVEKPELFREGIEVHGKIDWDRRIQHMRHHTGTHVLMGA 623

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +T D  R D++H K I+  EL+ IE   N I+ +N  V    + R
Sbjct: 624 LVRVLGRHVWQAGSQLTTDWARLDISHYKRISEEELREIEMLANKIVMENRKVTWEWLPR 683

Query: 657 EDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +A       L          +RV+++E  D        CGGTH+ STG +  + I+   
Sbjct: 684 TEAEQKYGFRLYQGGVVPGRTIRVINIEGWD-----VQACGGTHLPSTGLVGPIKILRTE 738

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I+ G+ RI    G+ A        E LK  +  L+V    +    E  + E+++ +   
Sbjct: 739 RIQDGVERIIFACGEAAIKEWQKDRELLKRASQVLRVPPEKLPETAERFFNEWKEARKEV 798

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K K +L        +    +I D+ F+  ++      +L+  ++ L++     + +L+ 
Sbjct: 799 EKLKKELAKLLVYELESKVERINDIEFIGEVVEG-SMDDLREAVEKLRR--PKRVTVLIS 855

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
                     + V E +    +A  +A+    + GGGG GGR  +AQ       KA + I
Sbjct: 856 KEG----YFAVSVGEGI--EVDARTIAKEITSIAGGGG-GGRREIAQGKIKEVGKAREVI 908

Query: 890 AGVASFL 896
             V   L
Sbjct: 909 KHVRELL 915


>gi|300709606|ref|YP_003735420.1| alanyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299123289|gb|ADJ13628.1| alanyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 921

 Score =  456 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 207/978 (21%), Positives = 365/978 (37%), Gaps = 203/978 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++  +R  FL FF+++GHE +    +        ++ T + +  F+ + T G+  P    
Sbjct: 61  SLEEMREKFLSFFEEHGHERVEPYPVAANRWRDDVLLTQASIYDFQPLVTSGKTPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG---------------YFKER 105
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F                 Y+K+R
Sbjct: 121 LTISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNTRDDVPEDEYAYYGEVYWKDR 176

Query: 106 AIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
            ++   D  T     D                                IT  ++ W    
Sbjct: 177 TVEYCDDFFTS-LGADPE-----------------------------EITYIEDPWVGG- 205

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------- 218
            G  GP  E+ +                  R +E+  LVFM  EQ  + +  +       
Sbjct: 206 -GNAGPAIEVIY------------------RGVELATLVFMCMEQDPEGDYELKDGNRYS 246

Query: 219 -LPKMSIDTGMGLERMATVLQEKTNNYD------------------IDLFKHLIQASEQV 259
            +    +DTG GLER   V Q     Y+                   D    L+ ++ ++
Sbjct: 247 YMDTYIVDTGYGLERWTWVSQGTPTVYEAIYPEMIDFLTDNAGITHTDEEAALLHSASKL 306

Query: 260 TGMKYE---------------------------GNNIVNHRVIVDHLRSSSFLIADGILP 292
            G                                  +     I DH R+ ++++ DGI+P
Sbjct: 307 AGHMDIDEAEDMESARGEIAAGVGVDVGELEALMEPMEAVYAIADHCRTLAYMLGDGIVP 366

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N   GY+ R ++RR       +G   PL   L+      +G       + +  I + +R
Sbjct: 367 SNVATGYLARMVLRRTKRLCDTVGVDAPL-DELVDMQAERLGY------ENRDTIRDIVR 419

Query: 353 SEDERFGKTLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +E E++ +TL+RG   ++ +      +DE +  +   +LYD+HG+  D++++I    G  
Sbjct: 420 TEVEKYRETLERGGRRVEQLAEEYAQRDEPIPVEELLELYDSHGIQPDMVEEIATEAGAT 479

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
                 F   +  +     A                       T+ + YD    ++F   
Sbjct: 480 VEVPDDFYSLVAGRHDAGEAMRETEERD-------ERVVDLPDTEKLYYDDAERTEF--- 529

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             +++          +     +  +VV DQT FY E GGQ  D 
Sbjct: 530 -----------------EAVIL---------DVIERAEGYDVVLDQTMFYPEGGGQPADH 563

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     ++DVQ++   +    +            +   +D + RR+L ++H+ATH
Sbjct: 564 GMISTDDGSYTVSDVQEREGVVLHRVSE----EPEKGALVRGRVDPERRRRLMVHHTATH 619

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           ++ HA   +LG H+ Q G+    D  R DV H   I   ++K IE   N+++  N+ V  
Sbjct: 620 IVGHATREVLGEHIRQAGAQKGTDSARLDVRHYDRIGREQVKEIERIANELVRDNVTVSE 679

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              +R +A A     L         R+  +   +        CGGTHVS TG+I  + +V
Sbjct: 680 EWPHRNEAEAEHGFDLYQGGIPPGERIRLIHIAED----VQACGGTHVSRTGDIGAIKVV 735

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           S   I+ G+ R+    G  A       ++ L   A+ L VS   V    E  +EE++   
Sbjct: 736 STERIQDGVERLTFAAGDAAIEATQETEDALYEAAAILDVSPPEVPATAERFFEEWKARG 795

Query: 772 LIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                   +L      +    ++     +   + + DS EL++  +AL ++ +  + +L 
Sbjct: 796 KEIESLTEELAELRAGEGEAVEVGGTTAVIQRV-DADSDELRATANALVEQGK--VAVLG 852

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGGP 880
             S    A  ++ V E +    NA ++    A          R           AQ GGP
Sbjct: 853 SASNG--AQFVVAVPEGV--GINAGEVVGTLAS---------RVGGGGGGPADFAQGGGP 899

Query: 881 NGNKADQAIAGVASFLKK 898
           + ++ D+A+A     LK+
Sbjct: 900 DTDELDEALADAPGILKE 917


>gi|257387184|ref|YP_003176957.1| alanyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257169491|gb|ACV47250.1| alanyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 924

 Score =  456 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 212/979 (21%), Positives = 369/979 (37%), Gaps = 202/979 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKN-IFTGQEKPVYQA 60
           ++  +R TFL FF++  H  +    +        ++ T + +  F+  + TGQ  P    
Sbjct: 61  SLEEMRETFLSFFEERDHGRVDPYPVAANRWRDDVLLTQASIYDFQPHVTTGQSPPPSNP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG------------YFKERAIQ 108
           +   Q C+R      D+DNVG+T RH   FEM G+ +F              Y+KE  +Q
Sbjct: 121 LVVSQPCIRM----QDIDNVGKTGRHTMAFEMGGHHAFNADEGAGYAYEGEVYWKEETVQ 176

Query: 109 LAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              +L  +E  +D   L                             T  ++ W     G 
Sbjct: 177 YCVELF-EELGVDSSEL-----------------------------TLIEDVWVGG--GN 204

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--------LP 220
            GPC E+ +                  + +E+  LVFMQFEQ    +  +        + 
Sbjct: 205 AGPCFEVIY------------------QGLELATLVFMQFEQDPDGDYEMKDGNSYSEMD 246

Query: 221 KMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---------- 270
           +  +DTG G+ER   + Q     Y+  ++  +I+      G+ Y                
Sbjct: 247 RRVVDTGYGIERWTWMSQGTPTVYEA-IYPEMIEFLRDNAGLDYTDEEDEIVFRAAKLAG 305

Query: 271 ------------------------------------NHRVIVDHLRSSSFLIADGILPAN 294
                                               +   I DH R+ ++++ DGI+P+N
Sbjct: 306 HMDIDEAEDVEAARDTMAEQLGVETARLVELMEPLEDIYAIADHSRTLAYMLGDGIVPSN 365

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            G GY+ R ++RR       +G   PL   L+      +G    + I+      + +R+E
Sbjct: 366 VGTGYLARMVLRRTKRLVDTVGVDAPL-DELVDMQADRLGYDNRDTIR------DIVRTE 418

Query: 355 DERFGKTLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
            E++ +TLDRG   +  +      KDE +      +LYD+HG+  D++ +I   RG+   
Sbjct: 419 VEKYRETLDRGGRKVRQLADDYAEKDEPIPVQELIELYDSHGIQPDMVAEIAAERGVDVD 478

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              +F   + ++    +A          ++      ++   T  + Y+  +  +F     
Sbjct: 479 VPDNFYGLVADRHGGGQAFEEDATVPHEKR-----LDELPETDRLYYEDQQRMEF----- 528

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           ++V  +                +VV DQT FY E GGQ  D G 
Sbjct: 529 ---------------EAVVLEVFD--------REDGDYDVVLDQTMFYPEGGGQPPDHGT 565

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D +  ++TDVQ     I             T   +   +D   RR+L  +H+ATH++
Sbjct: 566 ISTDDVTGEVTDVQVHGGVIVHT----CDEDPGTGEFVRGQVDATRRRRLMRHHTATHVV 621

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
            H+   +LG HV Q G+    D  R D+ H + I+  ++K IE   N+I+  N  V    
Sbjct: 622 IHSARQVLGEHVRQAGAQKGTDSSRIDIRHYESISREQVKEIEHRANEIVMDNAAVTQEW 681

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            +R +A  +    L         ++  +   D        CGGTHV  TG+I  + +++ 
Sbjct: 682 PDRHEAEKAHGFDLYQGGIPTGEQIRLIHVADD----VQACGGTHVGRTGDIGAIKLLNT 737

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I+ G+ R+    G  A       ++ L   A    V+  +V       ++E++     
Sbjct: 738 ERIQDGVIRLTFAAGDAAIDATHEIEDALYETAELYDVATEDVPDTAARFFDEWKARGKE 797

Query: 774 HAKRKLQLNVE------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
               K QL         D    ++AD   +   I + D  EL++  +A+  +   G I +
Sbjct: 798 IEDLKEQLAEARASGGGDSEEIEVADTTAVVQRI-DADMDELRAQANAVVDQ---GSIAV 853

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGG 879
           +G      A  ++ V + +    NA ++    A         GR           AQ GG
Sbjct: 854 LGSGASG-AQFVVAVPDGVA--VNAGEVVGELA---------GRVGGGGGGPSDFAQGGG 901

Query: 880 PNGNKADQAIAGVASFLKK 898
           P+ +K D A+A     L++
Sbjct: 902 PDADKLDDALADAPEILRQ 920


>gi|225166099|ref|ZP_03727831.1| Alanine--tRNA ligase [Opitutaceae bacterium TAV2]
 gi|224799655|gb|EEG18152.1| Alanine--tRNA ligase [Opitutaceae bacterium TAV2]
          Length = 543

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 168/517 (32%), Positives = 239/517 (46%), Gaps = 66/517 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
              + IR +FL++F K GH ++PS+SL+P + P L+FTN+GM  F  IF G   P     
Sbjct: 1   MTSAEIRQSFLDYFAKQGHTIVPSASLLP-DYPGLLFTNAGMNQFVPIFLGDRAPDVSHW 59

Query: 59  --------QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110
                         QKC+RAGGKHNDL++VG    HHT FEMLGN+SFG YFK  ++   
Sbjct: 60  AGVRPAKDTRAADTQKCIRAGGKHNDLEDVGYDTYHHTMFEMLGNWSFGDYFKRESLTWG 119

Query: 111 WDLLTKEFDLDQRRLYITVY----------DEDEEAFKLWKKI---SGL-SADKIIRITT 156
           W+LLTK + +  +RL+ TVY          + D EA  +W  +   +GL  A  I+    
Sbjct: 120 WELLTKVWGIPAKRLFATVYAPDKTKGDPAEFDHEAAAIWTDLFRAAGLDPAVHIVHGNK 179

Query: 157 NDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
            DNFW M +TGPCGPCSEI F+    +    G    +    R IEIWN VF+QF      
Sbjct: 180 KDNFWMMGDTGPCGPCSEIHFNLLPSDDEAAGRALVNSSSPRCIEIWNHVFIQFNANADG 239

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKT---------NNYDIDLFKHLIQASEQVTGMKY- 264
               L    +DTGMG ER+A +              +NY+ D+F  L     +++G  Y 
Sbjct: 240 TFAPLAAKHVDTGMGFERVAGIHATTHGFKDFSREPSNYNADVFTPLFAKVAELSGKTYR 299

Query: 265 ---------------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
                          +    +  RV+ DH R+ S  IADGI P NEGR YV+RRI+RR +
Sbjct: 300 ETVPATDADRKNLTEQERTDIAFRVLADHARTVSCAIADGIHPGNEGRNYVIRRILRRGI 359

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
            Y   LG        L+  +   +G  +PEL+  + +I   +RSE+E FG+ L++GL   
Sbjct: 360 LYGNKLGLKTGFFEQLVAPVVESLGPVFPELVAQQDIIRRVIRSEEESFGRALNKGLEEF 419

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
              L+    +  +      ++          + D++        D        ++  +R 
Sbjct: 420 QRALARSAINFGITHCDWQQI---------SLSDLVEEATRTANDPFIRFPTYQQYPARH 470

Query: 430 RAHSLGLGSGTTEKIWFSLKEK----YGATQFIGYDL 462
                 L        W  L  K     G   F  YD 
Sbjct: 471 PISRDELMRDPNSMPWNELSNKQFMVSGKIVFELYDT 507


>gi|328947373|ref|YP_004364710.1| alanyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328447697|gb|AEB13413.1| alanyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 605

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 164/471 (34%), Positives = 262/471 (55%), Gaps = 21/471 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R+ ++EFF+   H  +   SLIP NDP+++FT +GM P      G++ P    +
Sbjct: 1   MTANELRSKYIEFFKSKNHVEISGQSLIPENDPSVLFTTAGMHPLVPYLLGEKHPAGTRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QKC+R G    D+D VG    H T FEMLGN+S G YFK+ +I  +++ LT  K   
Sbjct: 61  TDYQKCIRTG----DIDEVG-DPSHLTCFEMLGNWSLGDYFKKESIGFSYEFLTSPKWLG 115

Query: 120 LDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           LD R++ +TV+  D+      EA   W K +G+  DKI  +  +DN+W+   TGPCGP +
Sbjct: 116 LDPRKISVTVFAGDDNAPRDEEAATYW-KENGMPEDKIAYLPASDNWWAAGPTGPCGPDT 174

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EIF+  GE +P        + E ++EIWN VFMQ+ + +++    LPK ++DTGMGLER 
Sbjct: 175 EIFYWVGEGLPPAGSNKGTDSENWMEIWNNVFMQYNRVDEKTLVPLPKKNVDTGMGLERT 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--G 289
             +LQ KT+ Y  ++F+ +I   E+++  KY  +     + R+I DH RS+ F++ D  G
Sbjct: 235 NCILQGKTSVYLTEVFQPIIAKIEELSSYKYGTDEEKDRSVRIIADHSRSAVFILGDQKG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+N G GYVLRR++RRA+ +   LG  +  +  +  A+      AYPEL Q K  I  
Sbjct: 295 VSPSNVGAGYVLRRLIRRAVRHGMKLGIEKNFLADIAQAVIENFKCAYPELEQNKEKIFT 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            L +E+ +F  TL +G      +L +L     + ++G +AF+LYDT G PL++ Q++   
Sbjct: 355 ELSAEENKFRDTLRKGEAEFQKLLPNLMKNPKKEISGKIAFRLYDTFGFPLELTQELGAE 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
            G   +D+  F +A  + +  ++    G   G   +   +  + + AT  +
Sbjct: 415 NGFT-VDVEGFKEAERKHQEASKTQDAGAAKGGLAEQSDTTTKYHTATHLL 464



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/144 (42%), Positives = 85/144 (59%), Gaps = 1/144 (0%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+ATHLL  AL  +LG  V+Q GS IT + +RFD T  +P+T  E++ +ED VN+ 
Sbjct: 454 TTKYHTATHLLQQALVNVLGDKVAQKGSNITNERMRFDFTFDRPMTKEEIQKVEDIVNEQ 513

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I ++LPV   +M  E A A GA AL   KY + V+V ++  +D    S  +CGG HV  T
Sbjct: 514 IKKDLPVTMEVMPLEKATAEGARALFTNKYGEDVKVYTIGEKD-NWFSKEVCGGPHVQHT 572

Query: 703 GEIMLLYIVSESSIRAGIRRIEAI 726
            +I    I  E S  AG+RRI A+
Sbjct: 573 AQIGEFKIQKEQSSSAGVRRIRAV 596


>gi|229553796|ref|ZP_04442521.1| possible alanine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|229312819|gb|EEN78792.1| possible alanine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
          Length = 394

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 160/389 (41%), Positives = 232/389 (59%), Gaps = 18/389 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++ VG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K FD
Sbjct: 64  TNAQKSIRT----NDIELVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K  G++ D I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 FDPKRLYVTVYPKDKGTKELWRK-VGVADDHIVE--AEDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 GECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           G+                E  RY+EIWN+VF +            P  +IDTGMGLER+ 
Sbjct: 176 GQSFNNVAEDDPENYPGGENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLERLV 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291
            V+Q     ++ DLF  +I+A+E+++  K       + V+ ++I DH R+ +F I DG L
Sbjct: 236 AVIQGTPTIFETDLFMPIIKATEKMSAGKRYGASAQDDVSFKIIADHARTVTFAIGDGAL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++ +
Sbjct: 296 PSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQPFIQKVI 355

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE 380
            SE+ RF +TLD G+ LL+ +++ L +  
Sbjct: 356 ESEEARFRQTLDAGVNLLNQIVAELKQKR 384


>gi|76801007|ref|YP_326015.1| alanyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|83305852|sp|Q3ITT7|SYA_NATPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|76556872|emb|CAI48446.1| alanine--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 932

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 215/985 (21%), Positives = 370/985 (37%), Gaps = 208/985 (21%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++  +R  FL FF+ + HE +    +        ++ T + +  F+ + T G+  P    
Sbjct: 61  SLEEMREAFLSFFEDHDHERIEPYPVAANRWRDDVLLTQASIYDFQPLVTSGETPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG----------------YFKE 104
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F                  Y+K 
Sbjct: 121 LTISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNAREDIDDPDQYAYEGEVYWKS 176

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
             +     LL  E   D                             I  +T  ++ W   
Sbjct: 177 ETVAYCDQLL-DELGAD-----------------------------IEDVTYIEDPWVGG 206

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------ 218
             G  GP  E+ +                  R +E+  LVFM  EQ    +  +      
Sbjct: 207 --GNAGPAIEVIY------------------RGLELATLVFMCMEQDPDGDYELKDGNRY 246

Query: 219 --LPKMSIDTGMGLERMATVLQEKTNNYD------------------IDLFKHLIQASEQ 258
             +    +DTG GLER   + Q     Y+                   D  + L+  + +
Sbjct: 247 SYMDTYVVDTGYGLERWTWMSQGTPTVYEAVYPEMISFLKDNAGLDYSDREESLVNRAAR 306

Query: 259 VTGMKYEGNNIV---------------------------NHRVIVDHLRSSSFLIADGIL 291
           ++G     +                              +   I DH R+ ++++ DGI+
Sbjct: 307 LSGKLDIDDVDDVEAARDDIADELGVETDELRALVEPLEDIYAIADHCRTLAYMLGDGIV 366

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI--QAKLLIEE 349
           P+N G GY+ R ++RR    A  +G   PL          E+     E +  + +  + +
Sbjct: 367 PSNVGTGYLARMVLRRTKRLADGVGVDAPL---------DELVDMQAERLDYENRDTVRD 417

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            +R+E E++ +TL+RG   ++ +      K + +  D   +LYD+ G+  + +++I    
Sbjct: 418 IVRTEVEKYRETLERGRRHVERLAEEYAQKGDPIPLDEVIELYDSRGIQPETVEEIAADH 477

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G        F   + E+   A A +        +     L      T+ + Y+    + F
Sbjct: 478 GADVEIPDDFYSLVAERHGEADADADDGTLAGDDDRIADL----PETEKLYYEEPERTDF 533

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                 V+ +                    GE V         +V  DQT FY E GGQ 
Sbjct: 534 EAVVLDVIERDA-----------------DGETV--------YDVALDQTMFYPEGGGQP 568

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    D +  ++TDVQ+   G+ +H      G       +   ID   RR+L  +H+
Sbjct: 569 ADTGTLSTDDVAAEVTDVQET-NGVVLHRTDEAPG---KGEFVRGQIDGVRRRRLMQHHT 624

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH++ HA   +LG HV Q G+    +  RFD+ H + I+  E+K IE   N+I+  NLP
Sbjct: 625 ATHIVGHAARQVLGDHVRQAGAQKGVESARFDIRHYERISREEVKRIERVANNIVTDNLP 684

Query: 649 VVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           V      R +A A     +        + +R++ V            C GTHV  TG+I 
Sbjct: 685 VKQEWPKRNEAEADYGFDIYQGGIPPGETLRLIQVGE------DVQACAGTHVLQTGDIG 738

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + I+S   ++ G+ R+    G  A       ++ L   A  L VS   V    E  +EE
Sbjct: 739 TIKILSTERVQDGVERLVFAAGDAAIEATQRTEDALYDTAEVLDVSPQEVPATAERFFEE 798

Query: 767 YRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           ++       + K QL               +     +   +   D  +L++  +AL   +
Sbjct: 799 WKDRGKRIEELKEQLAEARAHGGDGGEEVDLGGTTAVVQRVDG-DMDDLRATANAL---V 854

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------P 872
           + G + ++G S +  A+ ++ V +++    NA  +    A          R        P
Sbjct: 855 EDGTVAVLG-SGDDSATFVVAVPDNV--DINAGAVVGELAD---------RVGGGGGGPP 902

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
             AQ GGP+ +  D+A+      L+
Sbjct: 903 DFAQGGGPDVDSLDEALDAAPEILR 927


>gi|11499836|ref|NP_071080.1| alanyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|3334348|sp|O28029|SYA_ARCFU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2648270|gb|AAB89002.1| alanyl-tRNA synthetase (alaS) [Archaeoglobus fulgidus DSM 4304]
          Length = 906

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 212/964 (21%), Positives = 369/964 (38%), Gaps = 191/964 (19%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           +  +R  +L FF++ GH  +    ++      +  T + +  F+   T G   P    +T
Sbjct: 62  LDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLT 121

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKE 117
             Q C+R     +DLD+VGRT RH T FEM+ + +F       Y+K   +    +LL   
Sbjct: 122 ISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL--- 174

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
                                      G+  + I+     +  W+    G  GPC E   
Sbjct: 175 ------------------------NELGVKKEDIV---YKEEPWAGG--GNAGPCLE--- 202

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMGL 230
                I GG           +E+  LVFM  E+  + +  I       +    +DTG GL
Sbjct: 203 ----AIVGG-----------LEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGL 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV-------------- 276
           ER     +     YD  +F  ++      + + +   +    R++               
Sbjct: 248 ERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRG 306

Query: 277 -----------------------------------DHLRSSSFLIADGILPANEGRGYVL 301
                                              DH R   F++ DG++P+N G GY+ 
Sbjct: 307 ERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLA 366

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++RR++  A  L      +  L+      +G    E       ++E L  E ER+  T
Sbjct: 367 RLMIRRSLRLAEELEL-GLDLYDLVEMHKKILG---FEFDVPLSTVQEILELEKERYRTT 422

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           + +G  L++ ++      + L  D   +LYD+HG+P+++   I   +G            
Sbjct: 423 VSKGTRLVERLVER---KKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAE 479

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           L ++ S+A                 +L+ +Y AT+ + YD     +F             
Sbjct: 480 LAKRHSKAEKVQEKK---------ITLQNEYPATEKLYYDDPTLLEF------------- 517

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   + V  +            G    V+ +++ FY E+GGQ  D G  I +G + 
Sbjct: 518 -------EAEVIGV-----------EGD--FVILNRSAFYPESGGQDNDVGYLIANGGKF 557

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++ DV        V H +           +   ID   R +   +HSATH+L ++L  +L
Sbjct: 558 EVVDV--LEADGVVLHVVKGAKPE-VGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVL 614

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G+HV Q G+       R DVTH +  +  E+K IE   N  I  N P+    M+R +A  
Sbjct: 615 GNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAER 674

Query: 662 SGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                L         ++RVV V            CGGTH  STGEI +L I+   SI+ G
Sbjct: 675 KFGFRLYQGGVPPGRKIRVVQVGD------DVQACGGTHCRSTGEIGMLKILKVESIQDG 728

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           + R E   G+ A   +   +  L+  +S L+V    +   VE  +EE++  +    + K 
Sbjct: 729 VIRFEFAAGEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKS 788

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            +      +      +   +  ++ ++ + D + L+ + + L +K   G +M      E 
Sbjct: 789 VIADLWADILMERAEEFDSMKVVAEVV-DADMQALQKLAERLAEKGAVGCLM---AKGEG 844

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  V+    +    +++A +L R   + +  G GGGR  +AQ         ++ +  +  
Sbjct: 845 KVFVVTFSGQ----KYDARELLREIGR-VAKGSGGGRKDVAQGAVQQLLDREEMLDVIFR 899

Query: 895 FLKK 898
           FL +
Sbjct: 900 FLSE 903


>gi|14589371|gb|AAK70626.1|AC091238_4 Putative cytosolic tRNA-Ala synthetase [Oryza sativa Japonica
           Group]
          Length = 351

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 134/327 (40%), Positives = 181/327 (55%), Gaps = 27/327 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            S +R TF+ FF+   H   PSS ++P +DPTL+F N+GM  FK +F G   P       
Sbjct: 9   ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 68

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ +
Sbjct: 69  RRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQVY 128

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        E+  +W K   L  +K++     DNFW M +TGPCG
Sbjct: 129 KLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPCG 186

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI FD+           + +    IEIWNLVF+QF ++       LP   +DTGMG 
Sbjct: 187 PCTEIHFDRVGNRD-AASLVNNDDPTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGMGF 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----------KYEGNNIVNHRVIVDHL 279
           ER+ ++LQ K +NYD D+F  +  A  Q+ G            +      + +RV+ DH+
Sbjct: 246 ERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVADHI 305

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMR 306
           R+ SF IADG  P   G   +    +R
Sbjct: 306 RTLSFAIADGSQPGGMGWTLIGNIPLR 332


>gi|289758684|ref|ZP_06518062.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T85]
 gi|289714248|gb|EFD78260.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T85]
          Length = 702

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 247/713 (34%), Positives = 367/713 (51%), Gaps = 57/713 (7%)

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +D  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI++D+
Sbjct: 1   MDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDR 60

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERM 233
           G            E  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG+ER+
Sbjct: 61  GPEFGPAGGPIVSED-RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERI 119

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290
           A VLQ+  N Y+ DL + +I    +V    Y      + V +R+I DH R+++ LI DG+
Sbjct: 120 ALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGV 179

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I   
Sbjct: 180 SPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRI 239

Query: 351 LRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             +E+  F +TL  G  L + V S        +L+G  AF L+DT+G P+++  ++    
Sbjct: 240 AVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAET 299

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR    
Sbjct: 300 GL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS--- 355

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQTPF 520
                                + +  I   G+ V          A  GQ+VE+V D+TP 
Sbjct: 356 --------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPL 395

Query: 521 YAEAGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           YAE+GGQ+ D G   G    +  R  +TDVQK A+ ++VH   VE G      +++  +D
Sbjct: 396 YAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVD 455

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   +E
Sbjct: 456 PGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVE 515

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S  LCGG
Sbjct: 516 EVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLELCGG 571

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V
Sbjct: 572 THVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 631

Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEV 804
             RV  + E  R  +    + ++               +I +V  ++H +S V
Sbjct: 632 PARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAHRMSGV 684


>gi|15668744|ref|NP_247543.1| alanyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|2500963|sp|Q57984|SYA_METJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1591270|gb|AAB98556.1| alanyl-tRNA synthetase (alaS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 892

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 212/953 (22%), Positives = 390/953 (40%), Gaps = 178/953 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
               +   F+ FF+++GHE +  + +        ++ T + +  F+   T G  KP    
Sbjct: 58  TYKEMVKEFINFFKEHGHEPIKRAPVTARRWRDDILLTIASIAVFQPWITKGIVKPKANP 117

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+++  ++L ++   
Sbjct: 118 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGGHHAFNREDDFKYWQDETVELCFNFF- 172

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K+  +D++                              IT  +++W     G  GPC E+
Sbjct: 173 KKLGIDEK-----------------------------SITFIESWWEGG--GNAGPCYEV 201

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+        +P   +DTG G+ER   
Sbjct: 202 I------------------THGVELATLVFMQYEKVGD-NYKEIPLKIVDTGYGIERFVW 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------------ 271
               +   YD  +FK+++   ++  G+K     I+                         
Sbjct: 243 ASTGEPTIYDA-IFKNIVNKLKEDAGVKDIDKEILAKITEVAGLMDVKDVGDLRKLREEV 301

Query: 272 --------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  IVDH R+ +F++ DGI+P+N   GY++R ++R+ + +
Sbjct: 302 ANKVNIPVEELDKLISPYEDIYAIVDHTRALAFMLGDGIVPSNVKDGYLVRMLIRKTLRH 361

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              L  + P+   ++     E+   YPEL+  +  I E L  E  ++ +T++RG  +++ 
Sbjct: 362 MDRLNLSTPIT-EIVAMQLNELKDLYPELLDMEDYIMEILEIETNKYRQTIERGKGIVER 420

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +L    +   ++ +   +LYD+HGLP +I++D+  + G       +F   + E+    + 
Sbjct: 421 LLKSKKE---IDLENLIELYDSHGLPPEIVKDVAKSLGKDVKIPDNFYTIVAERHENKKE 477

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +                  T+ + Y+  +  +F                     + 
Sbjct: 478 VKEKIKLPEVNVD---------KTELLFYEYPKMKEF--------------------EAK 508

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           +  IV                V+ D+T FY E GGQ  DTG  I    + ++ DVQ K  
Sbjct: 509 ILRIVDD-------------YVILDRTAFYPEGGGQKADTGYIIKGDKKFRVVDVQ-KEN 554

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I  H        L+    +   ID++ R  L  NH+ATH+++ A   +LG HV Q GS 
Sbjct: 555 NIVYHKIENLNDELKEGDIVKGVIDWKRRLSLMRNHTATHIINAAAQKVLGRHVWQAGSD 614

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
           +  D  R D+TH K I+  ELK IE   N+I+  N  + +  M+R +A       +    
Sbjct: 615 VDVDKARLDITHYKRISREELKDIERVANEIVLNNYNIKSIFMDRNEAEEKFGFRIYQGG 674

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               + +R+V +E E+G +     CGGTH  +TGE+  + I+    ++ G+ R+   +G 
Sbjct: 675 VVPGNVLRIVIIEDENGNIVDVQACGGTHCQNTGEVGFIKIIKTERVQDGVERLIYSSGL 734

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--- 786
            A   +   ++ L+  A  L+     +   ++  +EE+++ +    + + ++        
Sbjct: 735 SALKAVQEMEDILEESAEILRCPTEELPKVIKRFFEEWKEQRKKIEELEKKIGELKKFEL 794

Query: 787 --SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                 I +   +   +   + KE+ ++ D L    ++ I++L+      K ++L    E
Sbjct: 795 INKFETIGNYKVLVEKVE-ANPKEMLNIADNL--ATENAIVVLL----NDKGNILCKRGE 847

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           ++       +L R  A       GGGR H+AQ  G      ++    V  F+K
Sbjct: 848 NV--DIKMNELIRYIA------KGGGREHLAQ--GKYEGDVEEIKKKVIEFIK 890


>gi|163784397|ref|ZP_02179287.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880336|gb|EDP73950.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 273

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 146/274 (53%), Positives = 193/274 (70%), Gaps = 3/274 (1%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  FLE+F+  GHE++ SSS+IP  DPTL+F N+GMVPFKN+F G EK  Y
Sbjct: 1   MKSLTSNEIRKNFLEYFKNKGHEIVKSSSIIPETDPTLLFVNAGMVPFKNVFLGLEKRPY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +   + QK  R  GKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTK  
Sbjct: 61  KRAASCQKVFRVSGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKKEAIEYAWEYLTKIL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ + +L+++V+ ED+EA+ +WK + GL  +KI ++   DNFWSM ETGPCGPCSEI+FD
Sbjct: 121 EIPEEKLHVSVFIEDDEAYDIWKNVIGLPEEKIHKLGVEDNFWSMGETGPCGPCSEIYFD 180

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +GE   G     S+E ERY+EIWNLVFMQ+ +    +   LP  +IDTGMGLER+A+VLQ
Sbjct: 181 RGEEY-GNPEFGSDEDERYLEIWNLVFMQYNRDETGKLTPLPHPNIDTGMGLERIASVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
              +NY+ DLF  +I+ +E ++G KY   N  + 
Sbjct: 240 GAKSNYETDLFMPIIKWTENISGKKYNPENPKDI 273


>gi|119719139|ref|YP_919634.1| alanyl-tRNA synthetase [Thermofilum pendens Hrk 5]
 gi|189082116|sp|A1RWQ1|SYA_THEPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119524259|gb|ABL77631.1| alanyl-tRNA synthetase [Thermofilum pendens Hrk 5]
          Length = 907

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 218/949 (22%), Positives = 379/949 (39%), Gaps = 157/949 (16%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++S+ R  F++FF+K  H  +    ++      +    + +  F+   T G   P    +
Sbjct: 60  SLSATRKMFIDFFEKRNHTPVKRYPVVARWREDVYLVGASIYDFQPWVTEGLVPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG--G---YFKERAIQLAWDLLTK 116
              Q  +R      DLDNVG+T RH T FEM+ + +F       Y+    ++ A+++LTK
Sbjct: 120 VISQPSIRL----TDLDNVGKTGRHLTGFEMMAHHAFNIRDQRVYWANETVEYAFEVLTK 175

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + +                                 IT   + WS    G  G   E+ 
Sbjct: 176 VYGVKPE-----------------------------EITFIFDMWSGG--GNAGEDYEVI 204

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                              R +E+  LVFM ++         +    +DTG GLER+  +
Sbjct: 205 V------------------RGLEVATLVFMHYKTAEDGSLIPIENRIVDTGYGLERIYWL 246

Query: 237 LQEKTNNYDI--------------------DLFKHLIQASEQVTGMKYEG---------- 266
           L    N Y+                     DL   L   S ++   K             
Sbjct: 247 LTGHYNVYEAVFSGVIDRLRKLSGVEKPPDDLMYRLALKSGRLDFKKPLEALETLRNVSR 306

Query: 267 -------------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                                + DH R+ ++++ DG++P+N G GY+  R++ R      
Sbjct: 307 EVGISFEELQRVLEPNEALYALADHTRTIAWMLGDGVVPSNSGAGYLA-RLLIRRSLRLL 365

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
                E  +  ++        + +PE ++ +  I + + +E+ERF +++ RG  +L  +L
Sbjct: 366 RRLQLELPLSEIVLWQIQYWRNDFPEYLELQDEIRDIVDTEEERFEESVKRGEKVLGALL 425

Query: 374 SHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
             L      ++  +   KLY++HG+P +++++   + GL   DI  F   L E RSRA+ 
Sbjct: 426 GELKSKGLRVVPAEEIVKLYESHGVPPELVKEKAESEGLEA-DITGFYSRLAEMRSRAQV 484

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                     +    S  +++  T+ + Y+  + ++F                     + 
Sbjct: 485 QQKEALQLPLD---PSRLKEFRPTRLLYYENEKLAEF--------------------EAT 521

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  ++                VV D T FY E GGQL DTG  + +G   ++    K  +
Sbjct: 522 VLGVLDGK------------YVVLDSTAFYPEGGGQLSDTGVLVYEGGECRVKYAFKVGD 569

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            +       E         +   +D + R  L  +H+ATH++  AL ++LG HV Q G+ 
Sbjct: 570 IVVHE---CEGNAPPVGARVKGVVDMERRLALMRHHTATHIVLGALRSVLGKHVWQAGAQ 626

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
            TPD +RFD TH K IT  + K+IE   N ++ ++ PV   ++NR +A  +    L    
Sbjct: 627 KTPDYVRFDFTHHKAITPEQAKAIEALANRVVMEDRPVRKYLLNRTEAEKAFGFTLYQGG 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +   D        CGGTH   TGEI L+ I+    I+ G+ R+    G 
Sbjct: 687 AVPQTTLRVVEIPGWDA-----EACGGTHCDRTGEIGLIKILGFEKIQDGVVRVVFKAGM 741

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A  ++ G  +KLK+L   L  S   +  + + +      L+    K + +L    +S  
Sbjct: 742 PALEYVQGMGDKLKNLQEILDASYEGLEEKAKSLKSRIEALEKEVKKLREELLKGGVSVS 801

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
            +A V  +   +   D  E +    A+ +   S +I+    +   K +  + VT+DLLDR
Sbjct: 802 PVATVQGVQVYVYFSDEYEPREAALAISRTRTSSVIL----AYNSKGNFALKVTDDLLDR 857

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI-AGVASFLK 897
            +A ++ R   + L G GGG R  + Q         D+ I   +   L+
Sbjct: 858 LDAREIGRSVCESLRGKGGGVR-DLYQGRIDETKSVDKVIVEALRQALE 905


>gi|110669520|ref|YP_659331.1| alanyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121689502|sp|Q18E76|SYA_HALWD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|109627267|emb|CAJ53757.1| alanine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 923

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 224/962 (23%), Positives = 373/962 (38%), Gaps = 171/962 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++S +R  FL FF+   H+ +    +        ++ T + +  F+ + T GQ  P    
Sbjct: 61  SLSGMREEFLSFFESRDHDRIEPYPVAANRWRDDVLLTQASIYDFQPLVTSGQTPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   Q C+R      D+DNVG+T RH   FEM+ + +F                T+E   
Sbjct: 121 LCISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFN---------------TREDAS 161

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+      VY +DE           + AD +  IT  ++ W     G  GP  E+ +   
Sbjct: 162 DEYAYTGEVYWKDETVRLCDAFFEHMGAD-LTEITYIEDPWVGG--GNAGPAFEVLY--- 215

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--------ILPKMSIDTGMGLER 232
                          R  E+  LVFM  EQ    E           +    +DTG GLER
Sbjct: 216 ---------------RGAELATLVFMSMEQDESGEYEMKDGNRYSPMDTYVVDTGYGLER 260

Query: 233 MATVLQEKTNNYDI---DLF---------------KHLIQASEQVTGMKYEGNNIV---- 270
            A V Q     Y+    D                 K LIQ +  ++G             
Sbjct: 261 WAWVSQGTPTVYEAVYPDTIEFLKNDADVTHTTDEKELIQQAAMLSGYLDIDEIDNLASA 320

Query: 271 -----------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
                                  +   I DH R+ +++  D I+P+N G GY+ R ++RR
Sbjct: 321 RADVADELDVDPSVLTDLLEPLESIYAIADHYRTLAYMFGDEIVPSNVGTGYLTRMVLRR 380

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
                  +G   PL   L+      +G       + +  I + +R+ED ++ +TL RG  
Sbjct: 381 TQRLIDDIGIDAPL-DELVDMQAERLGY------ENRDTIRDIVRTEDRKYRETLSRGRR 433

Query: 368 LLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            ++ +      ++E +  D   +LYD+HG+  D++ +I   RG        F   + ++ 
Sbjct: 434 RVETLADEYADRNESIPVDELIELYDSHGIQPDMVTEIASDRGATVEIPDDFYSLVADRH 493

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
                      +  T +           T  + YD   G++F                  
Sbjct: 494 -------TDDDTTETIEKRRDRLADLPETDRLYYDDQTGTEF------------------ 528

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
              ++V  I                ++V DQT FY E GGQ  D G    +   ++ITDV
Sbjct: 529 --EAVVLDIF---------EQDTGYDIVLDQTMFYPEGGGQPADHGTLTTEEETIEITDV 577

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
            K  +G+ +H A    G       +   +D + RR+L  +H+ATH++ HA   +LG HV 
Sbjct: 578 -KAQDGVILHQATENPG---KGDFIRGQLDVERRRRLMQHHTATHIIGHAARKVLGDHVR 633

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q G+    D  RFD+TH + I   E K+IE   NDII QN+ V     +R +A       
Sbjct: 634 QAGAQKGTDSARFDLTHYERINRIEAKTIESVANDIIRQNISVRQDWPDRHEAENEHGFD 693

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           L          + ++   D        CGGTHV+ TG+I  + I++   ++ G+ RI   
Sbjct: 694 LYQGGIPPGQNIRTITIGDD----IQACGGTHVTRTGDIGTIKILTTEPVQDGVERIVFA 749

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            G  A   +   ++ L   A  L V+  +V    +  + E+++      K K +L     
Sbjct: 750 AGDAAIDAVQTTEDALYDAADVLDVTPEHVPETADRFFTEWKERGKTIDKLKSELAEARA 809

Query: 787 S-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                    I  ++ +   ++  D+ EL+   +A+   +    + ++G   +  A  ++ 
Sbjct: 810 QGVTADAVSIDGIDAVIKTVNG-DADELRKTANAI---VDEDAVAVLGSDVDGSAQFVVG 865

Query: 842 VTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           V ED+    NA D+    A+ +G             P  AQ GGP+    + A+    S 
Sbjct: 866 VPEDI--GINAGDVVGQLARKVGGGGGGP-------PDFAQGGGPDAASLEVALDDATSV 916

Query: 896 LK 897
           L+
Sbjct: 917 LR 918


>gi|530410|emb|CAA83717.1| Ala-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 411

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/419 (39%), Positives = 247/419 (58%), Gaps = 30/419 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+FF    H  L   SLIP +DP+L++ NSG+   K  F G++ P  
Sbjct: 1   MKKLSTNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT + 
Sbjct: 61  PRLTNSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKN 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF
Sbjct: 117 YFDIDKNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSKKTNFWDVGQ-GPCGPNTEIF 175

Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE      I   L     E +RYIE+WN+VF QF          LP+ +IDTG GLE
Sbjct: 176 YDRGEIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVN-----------HRVIVDH 278
           R A++ Q    N++ D+F   I+  EQ+     KY  +N  N            +VI DH
Sbjct: 236 RFASIFQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADH 295

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +R++ F I+DG+ P N+ RGY++RR++RR+  +   LG  +  +  L+ ++   M   YP
Sbjct: 296 IRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYP 355

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
            L+  K L+E+T++ E+E+F KTL +G  LL+ ++        ++   A  L++++G P
Sbjct: 356 YLVDKKSLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNTVSDKDALLLFESYGFP 411


>gi|321309602|ref|YP_004191931.1| alanyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
 gi|319801446|emb|CBY92092.1| alanyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
          Length = 841

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 212/867 (24%), Positives = 378/867 (43%), Gaps = 79/867 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + S +R  +++FF   GH  + + SLIP + D +L+F NSG+   K+ F+G   P  + +
Sbjct: 6   SASELRKKWIDFFVSKGHLDVSNRSLIPPSTDKSLLFINSGVAAIKSYFSGDTPPPSRRL 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QK +R G    D++++G + RHHT+FEMLGNFS G YFK  AI+ AW+ L K   +D
Sbjct: 66  VSCQKVIRTG----DIESIGESVRHHTYFEMLGNFSLGDYFKTEAIEWAWEFLIKHLGMD 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             RLY+T+Y ED EA   WKK   +  D+II    + NFW M   GPCGPC+EI+FD+G 
Sbjct: 122 PDRLYVTIYKEDREAMAEWKKW--IPEDRIILGDKDTNFWDMG-VGPCGPCTEIYFDRGS 178

Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
               + I   L  ++ E  RY+EIWN+VF +F      +    P+ +IDTG GLER+ +V
Sbjct: 179 SYDPDDIGLDLLRNNVENNRYLEIWNIVFSEF-LNIDGQIVPAPQKNIDTGAGLERILSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           L+ K +N++  LF  ++   +     K +           D+ R+S  L+  GI    +G
Sbjct: 238 LEGKDSNFESSLFSPIVNFIDSHFSKKDKKVFWSA----ADYFRASCILLDSGINFGGKG 293

Query: 297 RGYVLRRIMRRAMCYARLLGYTE---PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           R YVLR+I R+ +   + L   E        ++  +   +   YP ++Q K  +   L  
Sbjct: 294 REYVLRKIFRKTIWLFKSLEDKELDFTFFSGVVNVVGESLDGFYPNILQNKESLSRILHE 353

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E     K  ++   LL  ++     D  +     F L  +HGL L ++Q  L        
Sbjct: 354 EYLLSVKAYEKSHALLMQLIKK--YDAEIPAKEIFDLVTSHGLELWLIQISLAGLNRT-F 410

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   +   +EE ++ +   ++                   ++ FI        K   +  
Sbjct: 411 DEKQYEALMEEHKNISFNRNI-------------------SSAFI--------KKHPKLL 443

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
            +  +      +    + V AI  +   + + + G    ++ D+T  +  +GGQ  D G 
Sbjct: 444 ALELKSSIDYSSPEKKAKVIAIFNEDFELLQKLEG-IGYLLLDETVVFPMSGGQDSDEGY 502

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G  I+  +     +             G       ++++ D   R  L  +H+A HLL
Sbjct: 503 INGKSIKESLKAPNGQVLHKV-------EGSFSLGEEVMVSHDKNKRGGLEKHHTAEHLL 555

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK--SIEDNVNDIIAQNLPVVT 651
              L   +     +       D    +V  S  I         +   +  +I ++LPV  
Sbjct: 556 FELLKREIDKSAERVSGQKYSDYFNLEVNFSSNIEKKNFNLVHLNKELCSLIEEDLPVKY 615

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            ++  E A +          Y       S+   D G +S  LC GTHV ST EI    IV
Sbjct: 616 ELLTLEKAKSLNIPIHFEEVYRKSED--SLRLVDIGGYSRELCIGTHVQSTKEIEDALIV 673

Query: 712 SESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
                ++ I + + I G +R    L  +  +     +FL +++ + + +     +E +K 
Sbjct: 674 GFKKKQSSIYKFKVIVGSKRVSDFLSDKSSRE----AFLSLNEEDEILK----NKEIKKQ 725

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           ++   K +L+  ++ +          +     +++ + + +V   ++ +++   + L   
Sbjct: 726 KISAGKLELRQRIKAVL----NSSPLVILREVDLNPQIIMAVFKEIRNELKGCTLFLFNE 781

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLAR 857
            + +    +I    D ++    +++ +
Sbjct: 782 FQGELKYYVIS---DSINVLKLLEILK 805


>gi|302339632|ref|YP_003804838.1| alanyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301636817|gb|ADK82244.1| alanyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 597

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/472 (34%), Positives = 254/472 (53%), Gaps = 22/472 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   +R  ++EFF   GH  +   SLIP NDPT++FT +GM P      G+  P    +
Sbjct: 1   MNSDELRNKYIEFFVSKGHARITGQSLIPENDPTVLFTTAGMHPLVPYLLGEPHPAGTRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QKC+R G    D+D VG    H TFFEMLGN+S G YFKE AI ++++ LT  K   
Sbjct: 61  TDYQKCIRTG----DIDAVG-DPHHLTFFEMLGNWSLGDYFKEDAISMSFEFLTSPKWLG 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           +   +L +T +  D+E      +  +WK+  G+  D+I  +   DN+W    ETGPCGP 
Sbjct: 116 IPVEKLSVTCFAGDDEVPRDEESASVWKR-MGIPEDRIFFLGRGDNWWGPAGETGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +E+F D G    G          +Y E+WN VFMQ+ +Q       L +  +DTGMG+ER
Sbjct: 175 TEMFIDTGRDACGDDCRPGCPCGKYFEVWNDVFMQYNKQADGSFVPLERTCVDTGMGIER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD-- 288
              VLQ K + Y+ + F  LI   E+++G +Y  +  +  + R+I DH+R++ F++ D  
Sbjct: 235 TVAVLQGKRSVYETEAFTPLISGIERLSGKQYGKDEGDDTSIRIIADHVRTAVFILGDER 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N G+GY+LRR++RRA+ +   LG     +  L   +    G  YPELI AK  + 
Sbjct: 295 GVKPSNLGQGYILRRLIRRAVRHGLKLGIDRAFLSELADIVFERYGLPYPELIAAKDFVR 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           E L +E+ RF +TL +G    + +L +L K +  ++ G VAF+LYDT+G PL+I +++  
Sbjct: 355 EELTAEEARFSETLKKGEHEFEKLLPNLKKSKSGVIPGRVAFRLYDTYGFPLEITEELAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
              L  +D   F ++ E+ +  ++  +     G            + AT  +
Sbjct: 415 EHDLT-VDREGFEKSFEKHQELSKKGAEKSFKGGLADHSERTTALHTATHLL 465



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 5/148 (3%)

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           +  + +  H+ATHLLH AL  +LG HV Q GS IT + LRFD  H + ++  E++ +E+ 
Sbjct: 451 HSERTTALHTATHLLHKALRMVLGEHVQQKGSNITTERLRFDFVHPEKMSDEEVRRVEEI 510

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I ++LPV   +M+ ++A A+GA A   +KY ++V+V S+     G  S  +CGG H
Sbjct: 511 VNQQIDRDLPVSMEMMSLDEARAAGALAFFESKYGEQVKVYSI-----GDFSKEVCGGPH 565

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V  TG++    I  E S  AG+RRI A+
Sbjct: 566 VEHTGQLGRFKITKEQSSSAGVRRIRAV 593


>gi|153217607|ref|ZP_01951288.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124113445|gb|EAY32265.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 593

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 242/640 (37%), Positives = 354/640 (55%), Gaps = 58/640 (9%)

Query: 264 YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323
           Y+     + RV+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ +   LG       
Sbjct: 5   YQDLTNQSLRVVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFH 64

Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN 383
            L+  L   MG+A  EL + + L+E+ LR E+E FG+TLDRG+ +L+  L  L   ++L+
Sbjct: 65  KLVGPLAEVMGTAGVELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQLS-GQVLD 123

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G+  FKLYDT+G P D+  D+   RG + ID   F QA+EEQR RAR        G    
Sbjct: 124 GETVFKLYDTYGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRAREA------GQFGT 176

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
            + SL +    T+F GY   RG                        S+V+ +  +G  V 
Sbjct: 177 DYNSLIKSATNTEFCGYTASRG-----------------------QSVVREMFVEGAEVS 213

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
              +G K  +V D TPFYAE+GGQ GDTG    D     + D QK       HH ++ +G
Sbjct: 214 TLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHVEDTQKLGN-AIAHHGVLAQG 272

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +L     +   +D + R  +S+NHSATHLLH AL  +LG HV+Q GS +  + LRFD +H
Sbjct: 273 VLAIGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGEHVAQKGSLVRAETLRFDFSH 332

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            + +T AE+K +E  VN  I  N  + T IMN ++A A GA AL G KY+D+VRV+S+  
Sbjct: 333 LEAMTPAEIKEVERLVNQEIRHNHNIETNIMNIDEAKAKGAMALFGEKYDDQVRVLSM-- 390

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
              G  S+ LCGG H S+TG+I L  I+SE  I AGIRRIEA+TG+ A  +         
Sbjct: 391 ---GDFSTELCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDY--------- 438

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMS 798
                L V Q     +V E+  + + L+    + K +L  ++ +       +IA VN + 
Sbjct: 439 -----LDVQQAQHDAKVSEMAAKAKLLEKEIQQLKDKLAAKESAGLINQVKQIAGVNVLV 493

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             ++  D+K L+ ++D L+ ++ SGIIML  ++ E K  ++  VT DL ++  A +L  +
Sbjct: 494 AQLNGADNKALRGMVDDLKNQLSSGIIMLGNVA-EGKVGLIAGVTNDLTNKVKAGELVNM 552

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            A  + GG GGGRP MAQ+GG + +    A+  V +++ +
Sbjct: 553 VALQV-GGKGGGRPDMAQAGGTDAHALPSALESVDAWIAE 591


>gi|198416598|ref|XP_002127690.1| PREDICTED: similar to LOC443692 protein [Ciona intestinalis]
          Length = 809

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 178/636 (27%), Positives = 304/636 (47%), Gaps = 48/636 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           +   +R  F+ FF++  H+ +PSS +    DP+L+F N+GM  FK +  G++K       
Sbjct: 28  SSKELRDIFINFFERRDHKFIPSSKVYTPEDPSLLFVNAGMNQFKPVLLGEQKKKSLFTN 87

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG    HHTFFEMLG++SFG YFKE A ++AW LLT+ 
Sbjct: 88  VRRAVNSQKCIRAGGKHNDLNDVGHDLTHHTFFEMLGSWSFGDYFKEDACKMAWLLLTEV 147

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            +L   RLY+T +          D +  ++WK   G++ ++I+   + DNFW M ETGPC
Sbjct: 148 LNLSPDRLYVTYFNGCPLNNLKPDYDTREIWKS-IGVNHNRILPFGSTDNFWEMGETGPC 206

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D+           ++     +EIWN+VFMQF + +  +   L    +D+GMG
Sbjct: 207 GPCTEIHYDRIGN-RHVPEQVNKSLSDVVEIWNIVFMQFNKVSISQLEPLNVCHVDSGMG 265

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHLR 280
           LER+  V+Q+K +NYD DLF  ++ A E+++ +         +        +R+I DH+R
Sbjct: 266 LERITAVMQQKQSNYDTDLFVPILSAIEEISKVGPYKGRVGEEDTNGIDAAYRMISDHIR 325

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
             +  I+DGI P  +GR  +LR+++RRA+      L    P +  LLP +   +G A+PE
Sbjct: 326 MLTVAISDGIYPGPKGRELILRKVLRRAVLAGIEKLQTPRPFLYTLLPTVVESLGCAFPE 385

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           +   +  + E ++  +  F +TLDRG +++   + +L  +E    +VA KL   +G PL+
Sbjct: 386 VELKQDEVMEVIKESEMAFYRTLDRGDLIVRKTIKNLAGNE-FPPEVAHKLRLQNGYPLN 444

Query: 400 -IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
            ++  +   +    +  +   +    +++  +     L +   E+   SL   +   +F 
Sbjct: 445 RMLLFLSQEKLNFNMMAVDSFKKQSSEKNLNKKSFSFLDN---EEDRSSLIHSFLKQKF- 500

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAV----SGQKVEV 513
                   K                    VS+ +  IV   G +  E      + + + +
Sbjct: 501 --------KPTVCVNSAKRLGDHQFTIAPVSAKLCGIVNDEGVMHTELNLLKGNVENLFL 552

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA----IVERGILRTEM 569
           + D+T       G+  + G     G    + +V                 V+   L +  
Sbjct: 553 LLDKTNLSQPFHGKFSNIGTIYLHGRAFPVVNVINLDGWFLHEITTTDLNVDFLQLCSGN 612

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
            + +  + +    L   HSA  +L      I+ +H 
Sbjct: 613 LVTVEQNEEYELTLIRTHSAKQMLKDTCRKIIPNHA 648


>gi|261402487|ref|YP_003246711.1| alanyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261369480|gb|ACX72229.1| alanyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 895

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 208/952 (21%), Positives = 393/952 (41%), Gaps = 179/952 (18%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTT 63
            +   F+ FF+++GHE +  + +        ++ T + +  F+   T G  KP    +  
Sbjct: 61  EMVKEFINFFKEHGHEPIKRAPVTARRWRDDILLTIASIAVFQPWITKGIVKPKANPLVI 120

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTKEF 118
            Q C+R     ND+DNVGRT RH T F M G+ +F       Y+++  ++L ++   K+ 
Sbjct: 121 AQPCIRL----NDIDNVGRTGRHLTCFTMGGHHAFNREDDFKYWQDETVELCFNFF-KKL 175

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            +D++                              IT  +++W     G  GPC E+   
Sbjct: 176 GIDEK-----------------------------SITFIESWWEGG--GNAGPCYEVI-- 202

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                              +E+  LVFMQ+E+        +P   +DTG G+ER      
Sbjct: 203 ----------------THGVELATLVFMQYEKVGD-NYKEIPLKIVDTGYGIERFVWAST 245

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------------------- 271
            +   YD  +FK+++   ++  G+K     I+                            
Sbjct: 246 GEPTIYDA-IFKNIVNKLKEDAGVKDIDKEILAKITEVAGLMDVKDVGDLRKLREEVAKK 304

Query: 272 -----------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
                               I DH R+ +F++ DGI+P+N   GY++R ++R+ + +   
Sbjct: 305 VNIQVEDLDKLISPYEDIYAIADHTRALAFMLGDGIVPSNVKDGYLVRMLIRKTLRHMDR 364

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           L  + P+   ++     E+   YPEL+  +  I E L  E++++ +T++RG  +++ +L 
Sbjct: 365 LNLSTPIT-EIVAMQLNELKDLYPELLDMEDYIMEILELEEDKYRQTIERGKGIVERLLK 423

Query: 375 HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
           +      ++ +   +LYD+HGLP +I++D+  + G       +F   + E+    +    
Sbjct: 424 NKKD---IDLENLIELYDSHGLPPEIVKDVAKSLGKDVKIPDNFYTIVAERHENKKEVKE 480

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
            +     +            T+ + Y+  +  +F                     + V  
Sbjct: 481 KIKLPEVDVD---------KTELLFYEYPKMKEF--------------------EAKVLK 511

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +                 V+ D+T FY E GGQ  DTG  I    + ++ DVQK+   ++
Sbjct: 512 VADD-------------YVILDKTAFYPEGGGQKADTGYIIKGDKKFRVIDVQKENNIVY 558

Query: 555 VHH--AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
                   +   L+    +   ID+  R  L  NH+ATH+++ A   +LG H+ Q GS +
Sbjct: 559 HKIEGLNDDINELKEGDIVKGVIDWDRRLSLMRNHTATHVINAAAQKVLGRHIWQAGSDV 618

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--T 670
             D  R D+TH K I+  ELK IE   N+I+  N  V +  M+R +A       +     
Sbjct: 619 DVDKARLDITHYKRISREELKEIERVANEIVLNNYNVKSIFMDRNEAEEKFGFRIYQGGV 678

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
              + +R+V +E E+G +     CGGTH  +TGEI  + I+    ++ G+ R+   +G  
Sbjct: 679 VPGNVLRIVIIEDENGNIVDVQACGGTHCQNTGEIGFIKIIKTERVQDGVERLIYSSGLS 738

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL---- 786
           A   +   ++ L+  A  L+     +   ++  +EE+++ +    + + ++         
Sbjct: 739 ALKAVQEMEDILEESAEILRCPSEELPKVIKRFFEEWKEQRKKIEELEKKIGELKKFELM 798

Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               ++ +   +   +   + KE+ ++ D L    ++ I++L+      K ++L    E+
Sbjct: 799 NKFERVGNYKVLVEKVE-ANPKEMLNIADNL--ATENTIVVLL----NDKGNILCKRGEN 851

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +       +L R  A       GGGR H+AQ  G    + +     V  F+K
Sbjct: 852 V--DIKMNELIRYIA------KGGGREHLAQ--GKYEGEVEGIKKKVIEFIK 893


>gi|312136375|ref|YP_004003712.1| alanyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311224094|gb|ADP76950.1| alanyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 908

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 204/952 (21%), Positives = 372/952 (39%), Gaps = 174/952 (18%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTT 63
            +   FL+FF+K GH+++P   ++       +    + +  F+   T G   P    +  
Sbjct: 69  ELEKLFLKFFEKKGHKIIPRYPVVAKRWRDDVFLVGASIYNFQPWVTSGIVDPPANPLVV 128

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEF 118
            Q  +R     ND+DNVGRT RH T F M G+ +F       Y+K   I+  ++ L +  
Sbjct: 129 SQPSIRL----NDIDNVGRTGRHFTCFTMGGHHAFNKEDKIIYWKNETIKYCYEFL-QTL 183

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            +  ++                             IT  +++W     G  GPC E+  D
Sbjct: 184 GISPKK-----------------------------ITFIESWWEGG--GNAGPCYEVCVD 212

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                              +E+  LVF+QF  +   +   +P   +DTG GLER A V Q
Sbjct: 213 ------------------GVELATLVFIQF--KTNGKLEDIPLKIVDTGYGLERFAWVSQ 252

Query: 239 EKTNNYD--------------------------------------IDLFKHLIQASEQVT 260
                YD                                       DL K   + + ++ 
Sbjct: 253 GTPTAYDAVFPQFIDKLKDITGVSVDKRLLKENARIAGLMDIETESDLMKLRKKVANKLN 312

Query: 261 GMKYEGNNI----VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
               + NNI     N   I DH R  +F+++DG++P+N G GY+ R ++RR +     L 
Sbjct: 313 ISVDKLNNIIGPMENIYAIADHTRCLTFMLSDGVIPSNMGEGYLARLVLRRIIRLMDELN 372

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
              PL   ++      +   YPE+ +    I   +  E++R+ KT+ +G   +  +++ L
Sbjct: 373 LNMPLK-KIMEIQIDILSKHYPEIEKHYDHILNVVELEEKRYSKTISKGKKTVKRIINDL 431

Query: 377 --GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
                  +      KLYD+ G+P +++++I    G++     +F   + EQ    +    
Sbjct: 432 KRKNKNKIPLKTLIKLYDSKGVPPELVREICKKEGISVELPDNFYTLVAEQHEGKKTKEK 491

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
           G            +      T+ + Y+  +  +F                    ++ +  
Sbjct: 492 GEK----------IDLDLPETKLLFYEKPKEKRF--------------------NAKIIG 521

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
             +               V+ D+T FY E GGQ  D G  +    +        K   I 
Sbjct: 522 SYKNS-------------VILDKTLFYPEGGGQPSDRGYLV-VNGKKFYVKNVTKVNNII 567

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H    +        ++   ID++ R +L+ NH+ATH+L  +   ILG HV Q G+    
Sbjct: 568 LHELDTDNVENLVGKNVEGIIDWERRVKLTRNHTATHILLASARKILGDHVWQAGAKKGI 627

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKY 672
              R D++H K ++  E+K IE   N+ + +N+ V  + M+R+ A       L       
Sbjct: 628 KASRLDISHYKRLSRDEIKKIEKLANEYVRKNIKVNVKWMDRQAAEKKYGFILYQGGVIP 687

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
             ++RVV +   D        C GTHV  TG+I  + I     I+ G+ R+E   G  A 
Sbjct: 688 GSKIRVVEIPGVD-----VQACAGTHVEYTGDIGFIKINRTERIQDGVERLEFSVGDSAV 742

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-----VEDLS 787
             +   ++ L   A   +V    +    +  +EE+++ +    + K ++           
Sbjct: 743 DFVQHYEDLLLKSAQIFRVEPQILPKTCKRFFEEWKQFKNEIERLKEEIAKLKIKTIKSK 802

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             KI D+  +   + +   KEL+++      K  +  ++L      K  +++I+V++  +
Sbjct: 803 IKKINDLKVVCEEL-DASMKELETIASEFI-KDGTDFVLL----GNKNKNLVIMVSKKSI 856

Query: 848 DR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++   A +  +   +  GGGG GGR ++A+            +  V   ++K
Sbjct: 857 EKGIKANEFMKKITEKFGGGG-GGRENIARGAIK--ENIRNILEFVYKIIEK 905


>gi|289191823|ref|YP_003457764.1| alanyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288938273|gb|ADC69028.1| alanyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 892

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 212/953 (22%), Positives = 386/953 (40%), Gaps = 178/953 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
               +   F+ FF+++GHE +  + +        ++ T + +  F+   T G  KP    
Sbjct: 58  TYKEMVNEFINFFKEHGHEPIKRAPVTARRWRDDILLTIASIAVFQPWVTKGIVKPKANP 117

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+++  ++L ++   
Sbjct: 118 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGGHHAFNREDDFKYWQDETVELCFNFF- 172

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K+  +D++                              IT  +++W     G  GPC E+
Sbjct: 173 KKLGIDEK-----------------------------SITFIESWWEGG--GNAGPCYEV 201

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+        +P   +DTG G+ER   
Sbjct: 202 I------------------THGVELATLVFMQYEKVGD-SYKEIPLKIVDTGYGIERFVW 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------------ 271
               +   YD  +FK+++   +   G++     I+                         
Sbjct: 243 ASTGEPTIYDA-IFKNIVNKLKDDAGVEDIDKEILAKITEVAGLMDVKDVGDLRKLREEV 301

Query: 272 --------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R+ +F++ DGI+P+N   GY++R ++R+ + +
Sbjct: 302 AKKVNIPVDELDKLISPYEDIYAIADHTRALAFMLGDGIVPSNVKDGYLVRMLIRKTLRH 361

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              L  + P+   ++     EM   YPEL+  +  I E L  E  ++ +T++RG  +++ 
Sbjct: 362 MDRLNLSIPIT-EIVAMQLNEMRDLYPELLDMEDYIMEILEIETNKYRQTIERGKGIVER 420

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +L        ++ D   +LYD+HGLP +I++D+  + G       +F   + E+      
Sbjct: 421 LLKSKKS---IDLDNLIELYDSHGLPPEIVKDVAKSLGKDISIPDNFYTIVAERHENKEE 477

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +     +            T+ + Y   +  +F                     + 
Sbjct: 478 VKEKVKLPEVD---------VEKTELLFYKYPKMKEF--------------------EAK 508

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           +  +V                V+ D+T FY E GGQ  DTG  I    + ++ DV +K  
Sbjct: 509 ILKVVND-------------YVILDKTAFYPEGGGQKADTGYIIKGDKKFRVIDV-QKEN 554

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I  H        L+   ++   ID+  R  L  NH+ATH+++ A   +LG HV Q GS 
Sbjct: 555 DIVYHKIENLDNELKEGDTVKGVIDWDRRLSLMRNHTATHIINAAAQKVLGKHVWQAGSD 614

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
           +  D  R D+TH K I+  ELK IE   N+I+  N  V +  M+R +A       +    
Sbjct: 615 VDVDKARLDITHYKRISREELKEIERVANEIVLNNYNVKSVFMDRNEAEEKFGFRIYQGG 674

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               + +R+V +E E+G +     CGGTH  +TGE+  + I+    ++ G+ R+   +G 
Sbjct: 675 VVPGNILRIVIIEDENGNIVDVEACGGTHCQNTGEVGFIKIIKTERVQDGVERLIYSSGL 734

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--- 786
            A   +   ++ L+  A  L+     +   ++  +EE+++ +    + + ++        
Sbjct: 735 SALKAVQEMEDTLEESAEILRCPTEELPKVIKRFFEEWKEQRKKIEELEKKIGELKKFEL 794

Query: 787 --SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                 I +   +   +   + KE+ ++ D L  +  + I++L+      K ++L    E
Sbjct: 795 MNKFETIGNYKVLVEKVE-ANPKEMLNIADNLANE--NAIVVLL----NDKDNILCKRGE 847

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +    N  +L R  A       GGGR H+AQ  G      ++    V  F+K
Sbjct: 848 SV--DINMAELIRYIA------KGGGREHLAQ--GKYEGDVEEIKKKVIEFIK 890


>gi|154150810|ref|YP_001404428.1| alanyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|189082109|sp|A7I7S4|SYA_METB6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|153999362|gb|ABS55785.1| alanyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 914

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 231/963 (23%), Positives = 372/963 (38%), Gaps = 182/963 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V  +R  FL FF+KNGH  +    +       +  T + +  F+   T G   P    +
Sbjct: 58  TVDEMREAFLSFFEKNGHTRIERYPVAARWRDDIYLTIASIADFQPFVTAGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEML + +F       Y+K+R ++L    L  
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTTFEMLAHHAFNTPTEEIYWKDRTVELCDQFLAS 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +  +T                             ++ W     G  GP  E+ 
Sbjct: 174 IGG-DLNK--VTY---------------------------KEHPWIGG--GNAGPSVEVM 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---------NKQERFILPKMSIDTG 227
                                +E+  LVFM   +Q         N ++ + +    +DTG
Sbjct: 202 I------------------GGLEVATLVFMSLGRQKTSHPGYDLNGEKYYPMKLRIVDTG 243

Query: 228 MGLERMATVLQEKTNNYDI----------------------DLFKHLIQASEQVTGMKYE 265
            GLER+    +     YD                       D  K L   +     M   
Sbjct: 244 YGLERLVWASKGSPTIYDAVFPDMVSRVMSSAGISHLLENKDYTKILAMNARFAGLMDIS 303

Query: 266 GNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYV 300
           G+N+ N R                          IVDH R  ++++ D I+P+N   GY+
Sbjct: 304 GSNLFNLRKKVAAAIEISPEKLDRMITPIEKVYAIVDHTRCLAYMLGDCIVPSNVREGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA-YPELIQAKLLIEETLRSEDERFG 359
            R ++RR +         + L       +  +M      +  Q   ++ E +  E E++ 
Sbjct: 364 ARLVIRRTLRMMNEFKMQDTL----ADLIEEQMKIIGMDKFQQDIAVVREIVDREVEKYA 419

Query: 360 KTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            TLDRG  ++  V      K + +       LYD+HG+P ++++DI    G       +F
Sbjct: 420 ITLDRGTRIVQKVAKSYKAKSQRVPLAEIITLYDSHGIPPEMIKDIAAKEGAVIDLPDNF 479

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              + +  S ++  +    +      +         T+ + Y+    ++F          
Sbjct: 480 YSQIADMHSESKKEAAPDKTAG----YAERVSALPPTKKLYYEQPGDTEF---------- 525

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      ++V     +               V DQT FY E GGQ  DTG  +G  
Sbjct: 526 ----------EAVVIDFFDE-------------YAVLDQTLFYPEGGGQPADTGSLVGSD 562

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ DV K  E I  H +    G+L+    +   ID + R  L  +H+ATH+L HA  
Sbjct: 563 SMARVDDVIKVGEVILHHISG---GVLQRGERVKGMIDEERRFSLMRHHTATHILLHAAK 619

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H+ Q+G+   P+  R D+ H K IT  EL+ IE   N ++  N PV   I NR  
Sbjct: 620 AVLGVHIHQSGAQKGPESSRIDIRHFKHITPDELRKIEIEANRMVMANRPVEISIENRTK 679

Query: 659 AIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A      AL          +R+V V            C GTH  STGEI  + I+    I
Sbjct: 680 AEQEYGFALYQGGVPPGKDLRIVKVAG------DIEACAGTHCRSTGEIGAIKILRVEHI 733

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA- 775
           + GI RIE   G  A  ++   ++   S A  L V   N+   V   + E++  +     
Sbjct: 734 QDGIERIEFAAGTAAVYYMQHLEQIAASSADVLSVQLENLPPTVTRFFSEWKDQKKEIER 793

Query: 776 --KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             +R ++L ++ +    I  +  +   I ++  +EL S+  +L +K     + L+    E
Sbjct: 794 MSQRLVELEIQAIQPESIGGIPVVVKRI-DLAPRELSSIATSLSEKGG---VALLATPGE 849

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
             A +++   +    R NA D+      +LGG G GG+P MAQ GGP  +K D A+    
Sbjct: 850 T-ARIVLASGD---ARVNAGDIIGQLCSLLGGKG-GGKPQMAQGGGPEVDKLDLALNVGR 904

Query: 894 SFL 896
             +
Sbjct: 905 ERI 907


>gi|325996515|gb|ADZ51920.1| Alanyl-tRNA synthetase [Helicobacter pylori 2018]
          Length = 334

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/331 (49%), Positives = 218/331 (65%), Gaps = 5/331 (1%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAAKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334
           I+RRA+ +  L+G  E  +  ++  +C +  
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFS 329


>gi|302415839|ref|XP_003005751.1| alanyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261355167|gb|EEY17595.1| alanyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 868

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/563 (33%), Positives = 286/563 (50%), Gaps = 61/563 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPVY-- 58
            + +R TF++FF++ GH ++PSSS++P NDPTL+FTN+GM  FK+IF G   Q  P Y  
Sbjct: 9   AAKVRETFIKFFEERGHTVVPSSSVVPHNDPTLLFTNAGMNQFKSIFLGTIAQSDPTYGL 68

Query: 59  QAVTTVQK----CVRAGGKHNDLDNV--GRTNR--HHTFFEMLGNFSFG--GYFKERAIQ 108
           +  T  QK    C  A  + ++L  V    + R   H+FFEMLGN+SFG   YFK+ AI+
Sbjct: 69  KRATDTQKGMSSCPTAANRASEL-TVWCSYSCRWQGHSFFEMLGNWSFGPQDYFKKDAIK 127

Query: 109 LAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNF 160
            +W+ +T+   L++ RLY+T ++ D         E+ +LWK   G+    I+  +  DN+
Sbjct: 128 YSWEFMTETLGLEKDRLYVTYFEGDPAQGLEPDLESKELWKS-VGVPESHILPGSKADNW 186

Query: 161 WSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP 220
           WSM +TGPCGPCSE+ +D+           +++    +E+WN V+M ++++  Q    LP
Sbjct: 187 WSMGDTGPCGPCSELHYDKI-GGRDAAHLVNKDDPMVVELWNNVWMAYDRRADQSLTPLP 245

Query: 221 KMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVN 271
              +DTGMG ER+   LQ+ ++NY  D++    +  ++VTG +                 
Sbjct: 246 AQHVDTGMGFERLVAALQDVSSNYATDIWSPYFKKIQEVTGTRAYTDKYGAEDPETIDTA 305

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPAL 329
           +R   DH+R   F IADG +P NEGRGYV+RR++RR   YAR     E       +LP L
Sbjct: 306 YRACADHIRMLGFAIADGAVPNNEGRGYVVRRVLRRGARYARKYLNAEIGTFFSRVLPTL 365

Query: 330 CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVA 387
             EMG  +PEL++ +  I+E L  E+E F KTLDRG          +     + L+G   
Sbjct: 366 IDEMGQQFPELVKKQNDIKEILDEEEEAFAKTLDRGEAQFQKFAGAAEKKGLKKLSGAEV 425

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           +KLYDT+G P+D+ Q +   RGL   D        +  + +AR  S  + S         
Sbjct: 426 WKLYDTYGFPVDLTQLMAEERGLQIDDEEV-----KAAQEKAREASKSVKSAIE------ 474

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--- 504
                    F   D+   ++  ++ +          +       V+ I      V+    
Sbjct: 475 --------TFPKLDVHGIAELEQQHKVARTNDADKYVKGDSKGKVQLIFDGKGFVKSTKD 526

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQ 527
                 + V+ D+T FYAEAGGQ
Sbjct: 527 IAENTPISVILDKTNFYAEAGGQ 549



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 93/252 (36%), Gaps = 33/252 (13%)

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS---- 733
           + + +  +    S   CGGTHV  TG I  L IV ES I  GIRRI A TG  A      
Sbjct: 615 LENPKKPEWRNISVEFCGGTHVEQTGHIKDLVIVEESGIAKGIRRIIAFTGDAAHQVQRE 674

Query: 734 ---------------HLMGQDEKLKSLASFL-KVSQGNVVGR---------VEEIWEEYR 768
                          +   +++++K +   L K +   +            V+ I +E +
Sbjct: 675 ATELSRQLDIVEALPYSPEKEKEVKEVQQALSKATISTLTKDELKKKLDKMVKAITDEQK 734

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           K Q   AK  L   V+           ++  +    ++K L   +     K +   + L 
Sbjct: 735 KRQKAEAKTALD-TVQKYFTENPDAKAYVGQLPISANTKALTETIKHYSTKDKERSVYLF 793

Query: 829 GISKEKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           G  KE+ A V  + V T        A   A   + V+GG  GG  P   Q  G      D
Sbjct: 794 GGGKEENAVVHGVYVGTHLASKGVTAEAWASTVSDVVGGKSGGKEPTR-QGQGTKPEATD 852

Query: 887 QAIAGVASFLKK 898
             +     +L++
Sbjct: 853 DGVKAATKWLEE 864


>gi|325971945|ref|YP_004248136.1| alanyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324027183|gb|ADY13942.1| alanyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 598

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 151/462 (32%), Positives = 246/462 (53%), Gaps = 25/462 (5%)

Query: 1   MS---NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M      + +R  F++FF    H  +  +SLIP NDPT++FT +GM P      G + P 
Sbjct: 1   MKKQLTANELRQKFIDFFVSKDHVQISGASLIPENDPTVLFTTAGMHPLVPYILGSDHPS 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            + +T  QKC+R G    D++ VG    H TFFEMLGN+S G YFK+ AI  +++ LT  
Sbjct: 61  GKRLTDYQKCIRTG----DIEAVG-DPHHLTFFEMLGNWSLGDYFKKEAIAYSFEFLTAW 115

Query: 118 FDLDQRRLYITVYDED------EEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCG 170
            +LD  +L +TV+  D      +EA + W+   G+  ++I  +   DN+W    ETGPCG
Sbjct: 116 LNLDISQLSVTVFAGDELVARDDEAAQTWESF-GIPRERIYFLPREDNWWGPAGETGPCG 174

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           P SE+F D G    G          +Y EIWN VFM +++ +      + +  +DTGMG+
Sbjct: 175 PDSEMFIDTGRPSCGPDCRPGCSCGKYFEIWNDVFMGYKKNSDGTYEEMSRKCVDTGMGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER   +LQ K + Y+ ++F  +I   E ++   Y  N    ++ R++ DH+R+S F++ D
Sbjct: 235 ERTIAILQGKKSVYETEVFAPIIAGIENLSQKHYGDNEDIDISIRILADHIRTSVFILGD 294

Query: 289 --GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
             G+ P+N G+GY+LRR++RRA+ +   LG     +  L   +    G  YPEL++ +  
Sbjct: 295 QRGVAPSNVGQGYILRRLIRRAVRHGHKLGIEGAFLGDLALIVLELYGKPYPELVENREF 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           + + L  E+ +F +TL +G    + +L +L  G    ++G  AFKLYDT+G P+++ +++
Sbjct: 355 VLKELAQEEAKFSETLAKGEREFEKMLPNLLKGNSRQISGRTAFKLYDTYGYPIELTKEL 414

Query: 405 LCARGLAGI---DIISFNQALEEQRSRARAHSLGLGSGTTEK 443
                          +F +  E  RS +     G  +  ++K
Sbjct: 415 AAEHDFTVDEAGFKEAFEKHQEISRSGSEQQFKGGLADHSDK 456



 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/148 (42%), Positives = 93/148 (62%), Gaps = 5/148 (3%)

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           +  + +  H+ATH+LH AL T+LG HV Q GS IT + LRFD TH  P+++ E++ +ED 
Sbjct: 453 HSDKTTALHTATHMLHQALRTVLGEHVGQKGSNITIERLRFDFTHHSPMSAEEIQKVEDM 512

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN+ I +NL V    M  ++A A GA A   +KY ++V+V S+     G +S  +CGG H
Sbjct: 513 VNEAIDRNLAVKCETMTLDEAKAQGAIAFFDSKYGEQVKVYSI-----GDYSKEVCGGPH 567

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V +T ++    I+ E S  AG+RRI+AI
Sbjct: 568 VENTSQMGHFKILKEQSSSAGVRRIKAI 595


>gi|256810754|ref|YP_003128123.1| alanyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256793954|gb|ACV24623.1| alanyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 892

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 212/953 (22%), Positives = 388/953 (40%), Gaps = 178/953 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
               +   F++FF+++GH  +  + +        ++ T + +  F+   T G  +P    
Sbjct: 58  TYKEMVNEFIDFFKEHGHTPIKRAPVTARRWRDDILLTIASIAVFQPWVTKGIVEPKANP 117

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+++  ++L ++   
Sbjct: 118 LVITQPCIRL----NDIDNVGRTGRHLTCFTMGGHHAFNREDDFKYWQDETVELCFNFF- 172

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   +D++                              IT  +++W     G  GPC E+
Sbjct: 173 KRLGIDEK-----------------------------SITFIESWWEGG--GNAGPCYEV 201

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+        +P   +DTG G++R   
Sbjct: 202 I------------------THGVELTTLVFMQYEKIGD-TYKEIPLKIVDTGYGIDRFVW 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------------ 271
               +   YD  +FK+++   ++  G+K     I+                         
Sbjct: 243 ASTGEPTIYDA-IFKNIVNKLKEDAGVKGIDKEILAKITEVAGLMDVKDVGDLRKLREEV 301

Query: 272 --------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R+ +F++ DGI+P+N   GY++R ++R+ + +
Sbjct: 302 ANKVNIPVEELDELISPYEDIYAIADHTRALAFMLGDGIVPSNVKDGYLVRMLIRKTLRH 361

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              L  + P+   ++     E+   YPEL+  +  I E L  E +++ +T++RG  +++ 
Sbjct: 362 MDRLNLSMPIT-EIVAMQLKELRDLYPELLDMEDYIMEILDIETKKYRQTIERGKGIVER 420

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +L      + L  D   +LYD+HGLP +I++D+  + G       +F   + E+      
Sbjct: 421 LLKS---KKALELDDLIELYDSHGLPPEIVKDVAKSLGKEVNIPDNFYTIVAERHENKEE 477

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                     +            T+ + Y+  +  +F                     + 
Sbjct: 478 TKEEFKLPEVD---------VEKTELLFYEYPKMKEF--------------------EAK 508

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           +  +V                V+ D+T FY E GGQ  DTG  I    + ++ DVQ K  
Sbjct: 509 ILKVVND-------------YVILDKTAFYPEGGGQKADTGYLIKGDKKYRVIDVQ-KEN 554

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I  H        L+    +   ID+  R  L  NH+ATH+++ A   +LG HV Q GS 
Sbjct: 555 NIVYHKIENLDDELKEGDVVRGVIDWDRRLSLMRNHTATHIINAAAQKVLGKHVWQAGSD 614

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
           +  D  R D+TH K I+  ELK IE   N+II  N  V +  M+R +A       +    
Sbjct: 615 VDVDKARLDITHYKRISREELKEIERIANEIILSNYNVKSVFMDRNEAEEKFGFRIYQGG 674

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               + +R+V +E EDG +     CGGTH  +TGE+  + I+    ++ G+ R+   +G 
Sbjct: 675 VVPGNVLRIVIIEDEDGNIVDVEACGGTHCQNTGEVGFIKIIKTERVQDGVERLIYSSGL 734

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--- 786
            A   +   ++ L+  A  L+     +   +   +EE+++ +    + + ++        
Sbjct: 735 SALKAVQEMEDILEESAEILRCPAEELPKVINRFFEEWKEQRKKIEELEKKIGELKKFEL 794

Query: 787 --SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                 + D   +   +   + KE+ ++ D L    ++ I++L+     +K ++L    E
Sbjct: 795 MNKFETVGDYKVLVEKVE-ANPKEMLNIADNL--ATENAIVVLL----NEKGNILCKRGE 847

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           ++  R +  +L +  A       GGGR H+AQ  G      ++    V  F+K
Sbjct: 848 NVDIRMD--ELIKYVA------KGGGREHLAQ--GKYEGDIEEIKKKVIEFIK 890


>gi|325474209|gb|EGC77397.1| alanyl-tRNA synthetase [Treponema denticola F0402]
          Length = 600

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 177/599 (29%), Positives = 291/599 (48%), Gaps = 34/599 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            +  +R+ +++FF+  GH  +   SLIP NDPT++FT +GM P      G+  P    +T
Sbjct: 6   TIDELRSKYIDFFKSKGHVEISGRSLIPENDPTVLFTTAGMHPLVPYLMGEPHPAGTRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
            VQKCVR G    D+D+VG    H TFFEMLGN+S G YFK+ +I  +++ LT E    +
Sbjct: 66  DVQKCVRTG----DIDDVG-DASHLTFFEMLGNWSLGDYFKKESIAYSFEFLTDEKYLGI 120

Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCS 173
              +L  TV++       D+E+  +W+ + G+S D+I  +   DN+W    ETGPCGP +
Sbjct: 121 PIDKLSFTVFEGNKDAPRDDESASIWESL-GVSKDRIFFLPKEDNWWGPAGETGPCGPDT 179

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EIF D G+   G          +Y+EIWN VFMQ+ +        L +  +DTGMG+ER 
Sbjct: 180 EIFIDTGKPACGSNCRPGCNCGKYVEIWNNVFMQYHKNMDGSYSPLKRKCVDTGMGVERT 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG-- 289
             +LQ K + Y+ + F  +I++ E ++G+KY        + R+I DH+R++ F++ D   
Sbjct: 240 VAMLQGKPSVYNTEAFTSIIKSIEDISGVKYGDNEKTDTSIRIIADHVRTACFILGDPKT 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+N G GYVLRR++RRA+ + + LG     +     A+  +    Y EL + + LI  
Sbjct: 300 TLPSNIGAGYVLRRLIRRAVRHGKKLGIDGNFLSVPASAVIAQNAGFYTELKENETLILT 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            L++E+++F +TL +G    + +L +L     +I+ G +AFKLYDT+G P+++ +++   
Sbjct: 360 ELKAEEDKFLETLKKGEAEFEKMLPNLLKNPKKIIPGRMAFKLYDTYGFPIELTEELASE 419

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  ++   F++A ++ +  +RA S  +  G        L +    T    Y       
Sbjct: 420 SGLT-VNREEFDEAFKKHQELSRAGSEQVFKGG-------LADHSEQT--TAY-HTATHL 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD--QTPFYAEAG 525
             K  R VL        +N  +  ++      E + EA   +   +V +  +        
Sbjct: 469 LHKALRMVLGDHVQQKGSNITAERLRFDFSHPEPMTEAEKKEVERLVNEAIKADLPVTME 528

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
               +    IG                     +    G    E +  L      + Q S
Sbjct: 529 VMPLEEAKKIGAMALFGEKYEDVVKVYKIGDFSTEVCGGPHVERTGSLGRFCIKKEQSS 587



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 89/167 (53%), Gaps = 5/167 (2%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +         +       +  Q +  H+ATHLLH AL  +LG HV Q GS IT + LRF
Sbjct: 436 HQELSRAGSEQVFKGGLADHSEQTTAYHTATHLLHKALRMVLGDHVQQKGSNITAERLRF 495

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +H +P+T AE K +E  VN+ I  +LPV   +M  E+A   GA AL G KY D V+V 
Sbjct: 496 DFSHPEPMTEAEKKEVERLVNEAIKADLPVTMEVMPLEEAKKIGAMALFGEKYEDVVKVY 555

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            +     G  S+ +CGG HV  TG +    I  E S  +G+RRI A+
Sbjct: 556 KI-----GDFSTEVCGGPHVERTGSLGRFCIKKEQSSSSGVRRIRAV 597


>gi|303243766|ref|ZP_07330107.1| alanyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302486008|gb|EFL48931.1| alanyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 905

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/967 (21%), Positives = 391/967 (40%), Gaps = 193/967 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + +   FL+FF++NGH  +    +        ++ T + +  F+   T G  +PV   
Sbjct: 60  TYNEMVKEFLKFFEENGHTPIKRHPVTARRWRNDILLTIASIAVFQPWVTKGIVEPVANP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+ +R ++L ++ + 
Sbjct: 120 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGGHHAFNKVNDFKYWTDRTVELCFNFM- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K+  +D++                              IT  +++W     G  GPC E+
Sbjct: 175 KKLGIDEK-----------------------------SITFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+    E   +P   +DTG G+ER   
Sbjct: 204 I------------------THGVELATLVFMQYEKIGN-EYKEMPLKVVDTGYGIERFVW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------------- 270
             Q     YD  +F ++++  ++  G+ Y  N                            
Sbjct: 245 ASQGTPTVYDA-IFGNIVKKLKENAGIDYIENIDERILAESATLAGLMDIENVGDLRILR 303

Query: 271 ----------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
                                 N   I DH R  +F+  DGI+P+N   GY+ R ++R+ 
Sbjct: 304 QKVAEKLKMNVDELDKLLTPLENIYAIADHTRCLAFMFGDGIVPSNVKDGYLARLLVRKT 363

Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368
           + Y + +G T PL   ++     E+   YPEL++ +  + + +  E+ ++ +T+++G  +
Sbjct: 364 LRYMKNVGITMPLK-EIINLQLEELKELYPELLEMRDYMMDVVDEEERKYLQTINKGRGI 422

Query: 369 LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA-----------RGLAGIDIIS 417
           ++ ++    +   +  D   +LYD+ GLP ++++DI+              G   ++I  
Sbjct: 423 VERLVKSKNE---ITLDDLIELYDSKGLPPEVVKDIVSEINSKSNTQNKKSGNIKLNIPD 479

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
               +  +R   +         + +K    L E    T+ + Y   +  +F         
Sbjct: 480 NFYTIVAERHEQKKTEESDELNSQKKALPELNEDIEKTELLFYKNPKQKEF--------- 530

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         +  I+                ++ D+T FY E GGQ  D G   G 
Sbjct: 531 -----------EGKILKIIDN-------------YIILDKTIFYPEGGGQKYDIGTINGK 566

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            +               V+H + +   L     +   ID+ +R  L  NH+ATH+++ A 
Sbjct: 567 KVIEVQKKDD------IVYHKLSDVNGLNEGDVVKGVIDWNHRINLMRNHTATHIINAAA 620

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG H+ Q GS + P+  R D+TH K I+  E+K IE   N+I+  N+PV +  M+R 
Sbjct: 621 QRVLGKHIWQTGSNVEPNKARLDITHYKRISRDEIKEIERIANEIVLNNIPVKSTFMSRN 680

Query: 658 DAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +A       +        + +R++++E  D        CGGTH  +TGE+  + I+    
Sbjct: 681 EAEQKYGFRIYQGGVVPGNVLRIINIEGID-----VEACGGTHCENTGEVGYIKILKTER 735

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I+ G+ R+E  +G  +   +   ++ L + +  L V   N+   V+  +EE+++ + I  
Sbjct: 736 IQDGVERLEYTSGINSVMEVSAMEDILINSSEILGVPIENLPKTVKRFFEEWKEQKKIIE 795

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + + ++             K+ + + +   +   + KEL S+ D L K+  S +++L   
Sbjct: 796 ELQKKIGEYKKYELANKFEKVGNYDILVEQVEG-NPKELMSIADNLIKE-GSIVVLL--- 850

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
                  +L    E +    +  +L R  A       GGG+ ++AQ  G   +       
Sbjct: 851 --NNNGYILCKKGEGV--DISMGELLRKIA------KGGGKDNLAQ--GKCLDDLKTLKN 898

Query: 891 GVASFLK 897
            V   LK
Sbjct: 899 KVFEELK 905


>gi|42527166|ref|NP_972264.1| alanyl-tRNA synthetase [Treponema denticola ATCC 35405]
 gi|48428513|sp|P61708|SYA_TREDE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|41817590|gb|AAS12175.1| alanyl-tRNA synthetase [Treponema denticola ATCC 35405]
          Length = 600

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/599 (29%), Positives = 291/599 (48%), Gaps = 34/599 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            +  +R+ +++FF+  GH  +   SLIP NDPT++FT +GM P      G+  P    +T
Sbjct: 6   TIDELRSKYIDFFKSKGHVEISGRSLIPENDPTVLFTTAGMHPLVPYLMGEPHPAGTRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
            VQKCVR G    D+D+VG    H TFFEMLGN+S G YFK+ +I  +++ LT E    +
Sbjct: 66  DVQKCVRTG----DIDDVG-DASHLTFFEMLGNWSLGDYFKKESIAYSFEFLTDEKYLGI 120

Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCS 173
              +L  TV++       DEE+  +W+ + G+S D+I  +   DN+W    ETGPCGP +
Sbjct: 121 PIDKLSFTVFEGNEDAPRDEESASIWESL-GVSKDRIFFLPKEDNWWGPAGETGPCGPDT 179

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EIF D G+   G          +Y+EIWN VFMQ+ +        L +  +DTGMG+ER 
Sbjct: 180 EIFIDTGKPACGSNCRPGCNCGKYVEIWNNVFMQYHKNMDGSYSPLKRKCVDTGMGVERT 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG-- 289
             +LQ K + Y+ + F  +I++ E ++G+KY        + R+I DH+R++ F++ D   
Sbjct: 240 VAMLQGKPSVYNTEAFTSIIKSIEDISGVKYGDNEKTDTSIRIIADHVRTACFILGDPKT 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+N G GYVLRR++RRA+ + + LG     +     A+  +    Y EL + + LI  
Sbjct: 300 TLPSNIGAGYVLRRLIRRAVRHGKKLGIDGNFLSVPASAVIAQNAGFYTELKENETLILT 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            L++E+++F +TL +G    + +L +L     +I+ G +AFKLYDT+G P+++ +++   
Sbjct: 360 ELKAEEDKFLETLKKGEAEFEKMLPNLLKNPKKIIPGRMAFKLYDTYGFPIELTEELASE 419

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  ++   F++A ++ +  +RA S  +  G        L +    T    Y       
Sbjct: 420 SGLT-VNREEFDEAFKKHQELSRAGSEQVFKGG-------LADHSEQT--TAY-HTATHL 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD--QTPFYAEAG 525
             K  R VL        +N  +  ++      E + EA   +   +V +  +        
Sbjct: 469 LHKALRMVLGDHVQQKGSNITAERLRFDFSHPEPMTEAEKKEVERLVNEAIKADLPVTME 528

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
               +    IG                     +    G    E +  L      + Q S
Sbjct: 529 VMPLEEAKKIGAMALFGEKYEDVVKVYKIGDFSTEVCGGPHVERTGSLGRFCIKKEQSS 587



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 89/167 (53%), Gaps = 5/167 (2%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +         +       +  Q +  H+ATHLLH AL  +LG HV Q GS IT + LRF
Sbjct: 436 HQELSRAGSEQVFKGGLADHSEQTTAYHTATHLLHKALRMVLGDHVQQKGSNITAERLRF 495

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +H +P+T AE K +E  VN+ I  +LPV   +M  E+A   GA AL G KY D V+V 
Sbjct: 496 DFSHPEPMTEAEKKEVERLVNEAIKADLPVTMEVMPLEEAKKIGAMALFGEKYEDVVKVY 555

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            +     G  S+ +CGG HV  TG +    I  E S  +G+RRI A+
Sbjct: 556 KI-----GDFSTEVCGGPHVERTGSLGRFCIKKEQSSSSGVRRIRAV 597


>gi|219851912|ref|YP_002466344.1| alanyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|219546171|gb|ACL16621.1| alanyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
          Length = 913

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 202/962 (20%), Positives = 358/962 (37%), Gaps = 180/962 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            +  +R  +L FF+++GH  +    +       +  T + +  F+   T G   P    +
Sbjct: 58  TLDEMREAYLSFFERHGHTRIDRYPVAARWRDDIYLTIASIADFQPYVTSGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+K+  ++L  + +  
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTLFEMMAHHAFNSPKEEIYWKDHTVELCDEFVHS 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                           D  A                 IT  ++ W     G  GP  E+ 
Sbjct: 174 IGG-------------DLNA-----------------ITYKEHPWIGG--GNAGPSVEVM 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---------NKQERFILPKMSIDTG 227
                                +EI  LVFM   +Q            + + +    +DTG
Sbjct: 202 I------------------GGLEIATLVFMSLGRQKTDHPPVELEGNQYYPMSTRVVDTG 243

Query: 228 MGLERMATVLQEKTNNYDI---DLFKHLIQASEQVTGMKYEGNNIV-------------- 270
            GLERM          YD    D+   ++ ++     +    +  +              
Sbjct: 244 YGLERMVWASTGSPTIYDAVFPDMVSTIMHSAGLDHHLDNPESTKMLALNAKFAGLMDIS 303

Query: 271 ------------------------------NHRVIVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH R  ++++ D I+P+N   GY+
Sbjct: 304 GANLFQLRKKVAATIDVPIEKLQKMIVPIEQVYTIADHTRCLAYMLGDLIVPSNVREGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR +     L   +  +  L+     ++G++  E  Q   +I E +  E E++  
Sbjct: 364 ARLVLRRTLRVMNDLKM-DIDLGDLIEMQINKIGNSQFE--QNLDVIHEIVDREVEKYAA 420

Query: 361 TLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           T++RG  ++  V +    K E +       LYD+HGLP ++++++    G       +F 
Sbjct: 421 TIERGTRIIQKVATTYKKKSEKVPLQEVVTLYDSHGLPPELIKEVASKEGAVVDLPDNFY 480

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +  S ++   +        + +         T  + Y+L    +F           
Sbjct: 481 SLIADMHSESQKEQVDDPL----ESYRERVSGLPDTHPLYYELPTEVEF----------- 525

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V                    V+ DQT FY E GGQ  DTG  +    
Sbjct: 526 ---------EGMVLDFFD-------------GYVILDQTLFYPEGGGQPADTGTLVTAES 563

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ D  K    I    +    G L+    +   +D   R  L  +H+ATH+L HA   
Sbjct: 564 MVRVEDTIKMGGVILHKIS---GGSLKRGERVKGMVDEDRRWSLMRHHTATHILLHASKE 620

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+H+ Q+G+    +  R D+ H K IT  EL+ IE   N I+ +N P+  +I  R  A
Sbjct: 621 VLGAHIHQSGAQKGSESSRIDIRHFKHITPEELRRIEVKANQIVMKNRPISIKIEERTKA 680

Query: 660 IASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L          +R+V V+           C GTH  STGE+  + I+    I+
Sbjct: 681 EQKYGFGLYQGGVPPGKEIRIVKVDG------DIEACAGTHCKSTGEVGAIKILRVEHIQ 734

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GI RIE   G+ A + +   ++ L   A  L++   N+   V+  + E+++      + 
Sbjct: 735 DGIERIEFSAGRAAITAMQHVEQLLDESAQTLRIQPENLPSSVQRFFTEWKERGKEVERL 794

Query: 778 KLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + +L   +L       +  VN +   I +VD  +L S+   L K    G+ +L   +   
Sbjct: 795 RARLVDLELQNVRYESVRGVNLVIKEI-DVDPSQLASLARKLSKN--DGVALLASSTDT- 850

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
              +++          +A  +    A +L  G GGG   MA     + ++ + A+     
Sbjct: 851 -LHLVLSSG---SRSVDAGKILGQIA-LLIDGKGGGNATMAHGISEDRSQLEPALQAGKK 905

Query: 895 FL 896
            +
Sbjct: 906 LI 907


>gi|150401051|ref|YP_001324817.1| alanyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
 gi|189082108|sp|A6UUN3|SYA_META3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150013754|gb|ABR56205.1| alanyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
          Length = 910

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 214/967 (22%), Positives = 377/967 (38%), Gaps = 189/967 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + +   FL FF KNGH  +    +        ++ T + +  F+   T G  KPV   
Sbjct: 60  TYNEMVKEFLNFFDKNGHTPIKRYPVSARRWRDDILLTIASIAVFQPWVTKGIVKPVANP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+ +R ++L ++  T
Sbjct: 120 LVIAQPCIRL----NDIDNVGRTGRHMTCFTMGGHHAFNTDEDFKYWTDRTVELCYNFFT 175

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               +D                                IT  +++W     G  GPC E+
Sbjct: 176 N-LGIDGS-----------------------------SITFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+  + +   +P   +DTG GLER   
Sbjct: 204 I------------------THGVELATLVFMQYEKTEQGDYIEMPLKIVDTGYGLERFVW 245

Query: 236 VLQEKTNNYD---IDLFKHLIQASE----------------------------------- 257
             +     Y+    D+   L+  +                                    
Sbjct: 246 ASKGTPTVYEAVFGDIIGKLMDDANINMNDIGPKILAESATLAGLMDIENVGDLRILRQK 305

Query: 258 -------QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                   V  +    + I N   I DH R  +F++ DGI+P+N   GY+ R ++R+ + 
Sbjct: 306 VAEKLNLDVNELDSILSPIENIYAIADHTRCLAFMLGDGIVPSNVKDGYLARLLVRKTLR 365

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
           Y + +G +  L   ++      +   YPEL+  K  I + L  E+ ++ +T+ +G   ++
Sbjct: 366 YIKNVGLSLSLK-DIVAMQLENLKEIYPELMDMKEYIMDVLEEEENKYIQTITKGKGAVE 424

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG------------IDIISF 418
            +     +   +  D   +LYD+ GLP ++++DI+      G                +F
Sbjct: 425 RIAKSKDE---ITLDDLIELYDSKGLPPEVVRDIVEEINKKGSKNNKGNKTIKITVPDNF 481

Query: 419 NQALEEQRS-RARAHSLGLGSGTTEKIWFSL-KEKYGATQFIGYDLLRGSKFMKEDRKVL 476
              + E+   +        G  T EK   S+  +    T+ + Y      +         
Sbjct: 482 YTIVAERHEEKKEDSKSEKGENTAEKSTISINLDDIPETELLFYSNPYQKE--------- 532

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      V + +  I+                V+ D+T FY E GGQ  D G    
Sbjct: 533 -----------VEAKILKIIGN-------------VVILDKTVFYPEGGGQKYDIGLIGN 568

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             I     +         V H +     L  E +++  ++++NR  L  NH+ATH+++ A
Sbjct: 569 KKIISVQKNNNG-----IVCHTVENTDGLNEEDTIIAKLNWENRLNLMRNHTATHIINAA 623

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
            S +LG H+ Q GS +  +  R D+TH K IT  E+K IE   N I+   +PV + +M R
Sbjct: 624 ASKVLGKHIWQTGSNVESNKARLDITHYKRITREEIKEIEKIANQIVLDAIPVKSTVMGR 683

Query: 657 EDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +A       +        + +R++ +E  D        CGGTH  +T E+  + I+   
Sbjct: 684 NEAEQKYGFKIYQGGVVPGNILRILDIEGVD-----VEACGGTHCQNTSEVGYIKILKTE 738

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I+ G+ R+E  +G  + + +   ++ L + +S + V   N+   V   +EE+++ + I 
Sbjct: 739 RIQDGVERLEYTSGINSVNEVSLMEDILLNASSIVGVPCENLPKTVNRFFEEWKEQKKII 798

Query: 775 AKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +      +L+    +    K+   + +   +     KEL S+ D L  +  + I++L+ 
Sbjct: 799 EELHKKIGELEKGNLNDKFEKVGKYDLLVEKVEGA-PKELMSIADNLVNEKDNSIVILLN 857

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S      +L    E +       +L R  A       GGG+  MAQ  G   +  +   
Sbjct: 858 NSG----YILCKCGEKV--EIKMGELLRKIA------KGGGKDKMAQ--GKCADDIETLK 903

Query: 890 AGVASFL 896
           + V   L
Sbjct: 904 SKVVGEL 910


>gi|119872431|ref|YP_930438.1| alanyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
 gi|205830187|sp|A1RT13|SYA_PYRIL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119673839|gb|ABL88095.1| alanyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
          Length = 892

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 216/952 (22%), Positives = 356/952 (37%), Gaps = 175/952 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           + + +R  FL FF++NGH  +    ++      +    + +  F+   T G   P    +
Sbjct: 56  SPAELRERFLRFFERNGHVRIKRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPANPL 115

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   Q A++  TK
Sbjct: 116 VISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETTQYAYEFFTK 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E                           G+  D+I   T  ++ W     G  G C E+ 
Sbjct: 172 EL--------------------------GIPQDEI---TFKESMWEGG--GNAGECFEVL 200

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                              R +E+  LVFM +E     +   LP   +DTG GLER+  +
Sbjct: 201 V------------------RGLEVATLVFMHYE-VKDGKYVELPLKIVDTGYGLERIYWL 241

Query: 237 LQEKTNNYDI--------------------DLF------------------KHLIQASEQ 258
           L+     YD                     D+                   K     +E+
Sbjct: 242 LKGTPTIYDAVFSHYLAKVRQKVGIPEPPADIMGRASIYFGQMDPEVIGLDKAYDIIAEK 301

Query: 259 VTGMKYEGNN----IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
           +                  V+ DH R+ S++IADG++P+N G GY+ R ++RR +   R+
Sbjct: 302 IGVDPKWLREVVRPQEALYVLADHSRTVSWMIADGVIPSNTGAGYLARLLIRRILKNLRV 361

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           +G   PL+  L      E+   YPE+  A+ LI E +  E++++ + L      +   L 
Sbjct: 362 VGIDAPLV-ELFDMHLAELKREYPEIWAARDLILELVDLEEKKYREVLKSAPAAVKKALE 420

Query: 375 HLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
              +     L+ D    LYD+ G+P +I+ ++  + G        F   L  + ++    
Sbjct: 421 EARRRGRAGLDTDDLVALYDSQGIPPEIVAEVAKSLGAEVKVPDDFYTKLAARHAKREKK 480

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                   +  +  S       T+ + Y+      F     +V+                
Sbjct: 481 PE------SPLVEMSKVADLPRTRELFYEDSYMRSFKARVLRVI---------------- 518

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                               VV DQT FY E GGQ  D G     G   ++ DVQ+    
Sbjct: 519 ----------------DGRYVVLDQTAFYPEGGGQPADRGVLKFQGGEAKVVDVQRVGHV 562

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           +          +      +V  ID++ R  L   H+ TH+L  ++  +LG H+ Q G+  
Sbjct: 563 VVHVVEGQ---LPPEGAEVVGEIDWERRYSLMKMHTGTHVLIQSIRRVLGPHIWQAGAQK 619

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--T 670
                R DVTH K  T+ E+  IE+  N ++ +NLPV  +IM R +A A     L     
Sbjct: 620 DIPSSRLDVTHYKLPTAEEIAKIEELANKVVQENLPVYVKIMPRNEAEAKYGFILYQGGV 679

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                +RV+ +   D        CGGTH+ STGEI L+ I     I  G+ R    TG  
Sbjct: 680 VPTREIRVLQIGP-DEEPFDIQACGGTHLRSTGEIGLIKIQKVERIADGVVRFVFTTGMH 738

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDLS 787
           A +++   + KL   A  +  S+   V  V+++ +   + +     +A+    +  E+L 
Sbjct: 739 ALAYIQELERKLAEAAHIIGGSREEFVESVKKLLQRAEEAERRAKHYAELYAAVVAENLR 798

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             +I         +++          D L K      I L    ++ K  VL+ V  D +
Sbjct: 799 AEQIGKYRVAVVELND----------DELAKH-----IALAATRRD-KDLVLVFVGGDRV 842

Query: 848 DRFNAVDLARLSAKVL--GGGGGGGRPHMAQS---GGPNGNKADQAIAGVAS 894
             +          K L   G  GGG    AQ    G  +     +A+    S
Sbjct: 843 TIYTGGVDVTPVVKTLREAGFRGGGSKTFAQGLYKG--DIQTLKEALKKALS 892


>gi|124486197|ref|YP_001030813.1| alanyl-tRNA synthetase [Methanocorpusculum labreanum Z]
 gi|189082110|sp|A2ST90|SYA_METLZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|124363738|gb|ABN07546.1| alanyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 913

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 223/964 (23%), Positives = 368/964 (38%), Gaps = 182/964 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +++ +R  +L FF+++GH  +    +       +  T + +  F+   T G   P    +
Sbjct: 58  SLTEMREAYLSFFERHGHTRINRYPVAARWRDDIYLTIASIADFQPFVTSGVCPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLDNVGR+ RH T FEM+ + +F       Y+K+R ++L    +  
Sbjct: 118 TISQPCIRL----NDLDNVGRSGRHFTCFEMMAHHAFNTDEKPIYWKDRCLELCSGFI-- 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                   L   V+D                      +T  +N W     G  GP  E+ 
Sbjct: 172 ------ESLGGNVFD----------------------LTYKENPWFGG--GNAGPSVEVL 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ---------ERFILPKMSIDTG 227
                                +E+  LVFM   ++N           + + +P   +DTG
Sbjct: 202 M------------------GGLEVATLVFMNLSRKNSGKPPVSIDGKDYYEMPLRIVDTG 243

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVI------------ 275
            GLER           YD  +F  +I       GM+    N    R++            
Sbjct: 244 YGLERFTWASCGTPTAYDA-VFPEMIPRILTAAGMEDRLENPEVERILGLNAKFAGLMDI 302

Query: 276 ------------------------------------VDHLRSSSFLIADGILPANEGRGY 299
                                                DH R  ++++ D I+P+N   GY
Sbjct: 303 RGEKIRDLRQQVADATNISVAKLEEIIVPMETVYALCDHTRCLAYMLGDLIVPSNVREGY 362

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           + R ++RR++   + L   + L   L+ +    +G A  E  +   ++   +  E E++ 
Sbjct: 363 LARLVLRRSIRMMQDLNMDDDLG-DLVVSQMKTIGLANFEQDE--DIVRHIINREVEKYD 419

Query: 360 KTLDRGLVLLDGV-LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            T++RG   +  V  +++ K+E +       LYD+HG+P+D+M  IL   G        F
Sbjct: 420 TTIERGTRTVQRVGQTYVKKNEPVPLAELITLYDSHGIPVDLMGKILKDTGAEFEIPDDF 479

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           +  + +  S                 +     K   T+   Y+     +F          
Sbjct: 480 DSQIADMHSENETEKPVSPLAK----YAERIAKIPETRKSFYERPADMEF---------- 525

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + V  I                 VV D T FY E GGQ  DTG  +   
Sbjct: 526 ----------DATVLDIFDN-------------YVVLDATLFYPEGGGQPSDTGMLVTKS 562

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++ +V K    I      V    L+    +   +D   R  L  +HSATH++  A  
Sbjct: 563 TMVRVDEVVKWENVILHK---VRENTLKRGDRVKGVLDEDRRWALMRHHSATHMVLRAAK 619

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS ++ D  R D+ H   IT  ELK +E   N ++ +NLP + +I NR  
Sbjct: 620 EVLGPHVHQAGSQLSTDVARLDIRHYTHITPEELKQMETIANRLVMENLPTMVKIENRVK 679

Query: 659 AIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A      AL          +RVV +            C GTH  STGEI  + I+    I
Sbjct: 680 AEQKFGFALYQGGVPPGKDIRVVQMGA------EVQACAGTHCQSTGEIGPIKILKLEHI 733

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + G+ RIE   G  A   +      L + A  L V   N+ G V+  + E++  +    K
Sbjct: 734 QDGVERIEFAAGFAALDAMQHIQSLLNTSADTLSVQTENLPGSVDRFFTEWKDQRKEIEK 793

Query: 777 RKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            + ++   +LS  +   I  V  +   I +V  KEL +V   + ++   G+ +L+  +  
Sbjct: 794 LRAKIAELELSRIEGINIGGVEVVIKQI-DVSRKELVTVAGKIAER--GGVTVLITTADG 850

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
                L VV      + +A  L       LGG G GG+ ++AQ  G + +   +A+    
Sbjct: 851 -----LGVVASSGTGKIHAGKLVGEVCAELGGKG-GGKENLAQGAGADPSAVGKALLKAE 904

Query: 894 SFLK 897
           SF++
Sbjct: 905 SFIR 908


>gi|145592424|ref|YP_001154426.1| alanyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|205830186|sp|A4WN07|SYA_PYRAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145284192|gb|ABP51774.1| alanyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
          Length = 892

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 214/950 (22%), Positives = 360/950 (37%), Gaps = 171/950 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +++ +R  FL FF++ GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 56  SLTELRERFLRFFERRGHARIKRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPANPL 115

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   + A++  TK
Sbjct: 116 VISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETTEYAYEFFTK 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E                           G++ ++I   T  ++ W     G  G C E+ 
Sbjct: 172 EL--------------------------GITPEEI---TFKESMWEGG--GNAGECYEVL 200

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                              R +E+  LVFM +E   + +   LP   +DTG GLER+  +
Sbjct: 201 V------------------RGLEVATLVFMHYE-TKEGKYVELPLKIVDTGYGLERIYWL 241

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-------------------------- 270
           L+     YD  +F   +  + Q  G+      ++                          
Sbjct: 242 LKGTPTIYDA-VFGPFLDRARQKLGVPEPPAEVMGKASIYFGQMDPEVIGLEKAYDLIAE 300

Query: 271 -----------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                               V+ DH R+ S++IADG++P+N G GY+ R ++RR +   +
Sbjct: 301 KIGVDGKWLREVFRPQEALYVLADHSRTVSWMIADGVIPSNSGAGYLARLLIRRILKNLK 360

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           L G   PL+  L+     E+   YPE+  A+ LI E +  E+ ++ + L     ++   L
Sbjct: 361 LAGIEAPLV-ELIDMHLKELKVDYPEVWAARDLILELVDLEERKYKEILKSAPTVVKKAL 419

Query: 374 SHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
               +     L+ D    LYD+ GLP +I+ D+   +G+       F   L  + ++   
Sbjct: 420 DEARRRGAASLSPDDLVALYDSFGLPPEIVADVAKTQGVEVKVPDDFYSRLAARHAKKEK 479

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                     + I          T+ + Y+      F  +  +                 
Sbjct: 480 QPESTLVEMAKVI------DLPRTRELFYEDPYMRSFKAKVLR----------------- 516

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
               V  G+            VV DQT FYAE GGQ GD G     G   ++ DVQ+   
Sbjct: 517 ----VVDGK-----------YVVLDQTAFYAEGGGQPGDVGVLKYSGGAAKVVDVQRVGH 561

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I               + +V  ID++ R  L   H+ TH+L  ++  +LG H+ Q G+ 
Sbjct: 562 IIVHVVEGQ---PPPEGVEVVGEIDWERRYALMKMHTGTHVLIQSIRRVLGPHIWQAGAQ 618

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
                 R DVTH K  T  E+  IE   N  +  NLPV  +IM R +A A     L    
Sbjct: 619 KDIPSSRLDVTHYKLPTPEEVAEIERLANSAVQANLPVYVKIMPRNEAEAKYGFILYQGG 678

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +   D   +    CGGTH+ STGEI ++ I     I  G+ R    TG 
Sbjct: 679 VVPAREIRVVQIGP-DSDPYDVQACGGTHLKSTGEIGIIKIQKVERIADGVVRFIFTTGL 737

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI---HAKRKLQLNVEDL 786
            A S++   + +L   A     S+ NVV  V+ +     + +     +A+   +   + L
Sbjct: 738 HALSYIQELERQLGQAAQVAGGSRDNVVEAVKRLASRAEEAERKWRHYAELYAKQMAQSL 797

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
              ++         + + D    K V +    + +  +++++G     K S+        
Sbjct: 798 KAEQVGRYKLAVVELDDEDLA--KKVAEEATGRDKDLVLVVMG---GNKLSIF------- 845

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQS--GGPNGNKADQAIAGVAS 894
               +   + +   +V  G  GGG    AQ    G +      A+    S
Sbjct: 846 TGGADVAPIVKSLREV--GFRGGGSRTFAQGVYSG-DVKTLIDALRRALS 892


>gi|289581575|ref|YP_003480041.1| alanyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289531128|gb|ADD05479.1| alanyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 926

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 218/982 (22%), Positives = 373/982 (37%), Gaps = 206/982 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           N+S +R  FL FF+ + HE +    +        ++ T + +  F+ + T G+  P    
Sbjct: 61  NLSEMREQFLSFFEAHDHERIDPYPVAANRWRDDVLLTQASIYDFQPLVTSGETPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG----------------YFKE 104
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F                  Y+K+
Sbjct: 121 LTVSQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNAREDLDDPEQYAYQGEVYWKD 176

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           R ++L  +                                G+  +++I I   ++ W   
Sbjct: 177 RTVELCDEFF---------------------------DSMGVDLEEVIYI---EDPWVGG 206

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------- 217
             G  GP  E+ +                  R +E+  LVFM  EQ  + E         
Sbjct: 207 --GNAGPAIEVIY------------------RGVELATLVFMSMEQDTEGEYEMKDGNRY 246

Query: 218 -ILPKMSIDTGMGLERMATVLQEKTNNYDI-------------------DLFKHLIQASE 257
             +    +DTG GLER   V Q     Y+                    D    + +A++
Sbjct: 247 TPMDTYIVDTGYGLERWTWVSQGTPTVYEAVYPDMIEFLKDNAGIEHTEDEEALIHRAAK 306

Query: 258 QVTGMKYEGNNIV--------------------------NHRVIVDHLRSSSFLIADGIL 291
               M  +    +                          +   I DH R+ ++++ DGI+
Sbjct: 307 LAGHMDIDEAEDMETARGEIATELAVDAAELESLMEPLEDIYAIADHCRTLAYMLGDGIV 366

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N G GY+ R ++RR       +G   PL          +M +   E  + +  I + +
Sbjct: 367 PSNVGTGYLARMVLRRTKRLCDTVGVDAPL------DELVDMQADRLEY-ENRDTIRDIV 419

Query: 352 RSEDERFGKTLDRGLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           R+E E++ +TL+RG   ++ +   H    E +  D   +LYD+HGL  D++++I    G 
Sbjct: 420 RTEVEKYRETLERGSRRVESLAEEHAETGEPIPTDELIELYDSHGLQPDMVEEIAAEAGA 479

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
                  F   + E+     A                       T+ + YD  + ++F  
Sbjct: 480 DVDVPDDFYSLVAERHDTPEAAEKTTDETD------ERFADLPETETLYYDDQQRTQF-- 531

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              ++V  +                ++V DQT FY E GGQ  D
Sbjct: 532 ------------------EAVVLDVF---------ERESGYDIVLDQTMFYPEGGGQPAD 564

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D   +++ DVQ + +G+ +H    + G       +   +D   RRQL  +H+AT
Sbjct: 565 TGTLSTDDATVEVRDVQ-REDGVILHRTDDKLG---KGEFVNGQLDATRRRQLMRHHTAT 620

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H++ HA   +LG HV Q G+    D  R D+ H   I+  ++K+IE   ND++ +N  V 
Sbjct: 621 HIVIHAARQVLGEHVRQAGAQKGVDSSRIDLRHYDRISREDVKTIERVANDLVMENTSVS 680

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               +R DA +     L         ++  +   D        CGGTHV+ TG+I  + I
Sbjct: 681 QEWPDRHDAESDHGFDLYQGGIPPGEQIRLIHVADD----VQACGGTHVNRTGDIGSIKI 736

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++   ++ G+ RI    G  A       ++ L   A  L VS   V    E  +EE++  
Sbjct: 737 LTTERVQDGVERITFAAGDAALESTQENEDALYEAAEILDVSPEEVPDTAERFFEEWKAR 796

Query: 771 QLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
                    +L             + + +   +   + + D  EL++   A+   +  G 
Sbjct: 797 GKQIEDLTEELAAARAGGGGSGEEYDVGETTAIVDRL-DADMDELRATASAI---VDEGS 852

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQ 876
           I ++G S E  A+ ++ V +D+    NA ++    A          R        P  AQ
Sbjct: 853 IAVLG-SGESGATFVVAVPDDV--GVNAGEVVGELAA---------RVGGGGGGPPDFAQ 900

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            GGPN    D A+A     L++
Sbjct: 901 GGGPNTEDLDDALADAPDVLRQ 922


>gi|330837065|ref|YP_004411706.1| alanyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
 gi|329748968|gb|AEC02324.1| alanyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
          Length = 598

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/454 (36%), Positives = 251/454 (55%), Gaps = 20/454 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+EFF   GH  +P +SLIP NDPT++FT +GM P      G E P    + 
Sbjct: 6   TADDLRSKFIEFFVSKGHVQIPCASLIPENDPTVLFTTAGMHPLVPYIMGAEHPAGTRLV 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R G    D+D+VG    H TFFEMLGN+S G YFK+ +I  +++ LTK  D+D 
Sbjct: 66  DYQKCIRTG----DIDSVG-DPHHLTFFEMLGNWSLGDYFKKESIGFSFEFLTKVLDIDV 120

Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSEI 175
            RL +TV+        DEE+   W K+ G+  ++I  +   DN+W    ETGPCGP SEI
Sbjct: 121 ARLSVTVFVGDADVPRDEESAATW-KLLGIPEERIYYLPREDNWWGPAGETGPCGPDSEI 179

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           FFD                 RY EIWN VFM ++++       + +  +DTGMG+ER   
Sbjct: 180 FFDTRRQTNNPDSRPGSSDGRYFEIWNNVFMGYKKEADGSYGEMTRKCVDTGMGIERTIA 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--GIL 291
           VLQ K + YD ++F+ +I A E ++G  Y     + ++ R+I DH+R+S F++ D  G+ 
Sbjct: 240 VLQGKQSVYDTEVFQPVIHAIEGLSGKTYGENEQDDISIRIIADHIRTSVFILGDQKGVA 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N G+GY+LRR++RRA+ + R LG     +  L   +    G  YPE+I+ K  +   L
Sbjct: 300 PSNVGQGYILRRLIRRAVRHGRKLGIEGKFLSGLASPVFELYGKPYPEIIENKKFVIAEL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+E+F +TL +G    + V      G    ++G VAF+LYDT+G P+++  ++    G
Sbjct: 360 DAEEEKFSETLAKGEKEFEKVRLGMEKGNSRQISGRVAFRLYDTYGFPIELTTELATEHG 419

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           +  +D   F +A ++ +  +RA +     G    
Sbjct: 420 MT-VDTEGFAEAFKKHQEISRAGAEQQFKGGLAD 452



 Score = 91.4 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 63/140 (45%), Positives = 89/140 (63%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL T+LG+HV Q GS IT + LRFD TH +P+T  +++ +ED VN+ I +N
Sbjct: 461 HTATHLLHQALRTVLGTHVGQKGSNITVERLRFDFTHPEPMTKEQIQQVEDIVNEQIKRN 520

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V  +    E+A   GA A   +KY + V V S+     G  S  +CGG HV+ TG++ 
Sbjct: 521 LTVTKKTETLEEAQKEGAIAFFESKYGELVTVYSI-----GNFSKEVCGGPHVTHTGDMG 575

Query: 707 LLYIVSESSIRAGIRRIEAI 726
             +I+ E S  AG+RRI+A+
Sbjct: 576 HFHILKEQSSSAGVRRIKAV 595


>gi|84490050|ref|YP_448282.1| alanyl-tRNA synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|121707543|sp|Q2NEW4|SYA_METST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|84373369|gb|ABC57639.1| AlaS [Methanosphaera stadtmanae DSM 3091]
          Length = 903

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 199/956 (20%), Positives = 352/956 (36%), Gaps = 176/956 (18%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTV 64
           I+  F  FF+ +GH  +    ++       +    + +  F+   T G  +P    +   
Sbjct: 56  IQKKFKGFFKDHGHTPINRYPVLAKRWRNDVFLVGASIYDFQPWVTSGMVRPPANPLVVA 115

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
           Q  +R     ND+DNVGRT RH T F M  + +F       Y+K   ++   + L     
Sbjct: 116 QPSIRL----NDVDNVGRTGRHMTCFTMGAHHAFNTDETPIYWKNETLRYCHEFLVS--- 168

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
                                    G++ ++I  I   +++W     G  GP  EI    
Sbjct: 169 ------------------------IGINPEEITYI---ESWWKGG--GNEGPSFEI---- 195

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                             +E+  LVF+Q+          +P   +DTG GLER+A V Q 
Sbjct: 196 --------------CAHGVELATLVFIQYATTKDG-LKEIPLKIVDTGYGLERIAWVSQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGM------------------------------------- 262
               YD   F  +I     ++G+                                     
Sbjct: 241 TPTAYDA-TFGSVIDKLTDISGVELNTEILSENARIAGMMDIEDISDLKLLRKKVADKLS 299

Query: 263 ------KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
                 K     +    ++ DH R  SF++ADGI+P+N   GY+ R ++RR + Y   LG
Sbjct: 300 LDPDMLKKTTAPMEAIYIVADHTRCLSFMLADGIIPSNVKEGYLARLVLRRTVKYMNELG 359

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
             E L   ++      +   YPE+   K  I      E+ER+  TL +G  L+   +  L
Sbjct: 360 LNESLS-DIMKMQVDYLSKTYPEIKDNKDHIINITDLEEERYHTTLTKGKNLVKRSIKTL 418

Query: 377 GKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
            K        D+    YD+HG+P + ++ I            +F   +           +
Sbjct: 419 KKQNKKSFPTDMLINFYDSHGIPPETVEAISKENAFDANIPDNFYTQIAAAHEEEEEEEI 478

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
                            +  T+   YD L+   F                    ++ V  
Sbjct: 479 EEME-----------LNFPKTKLSFYDDLKQRTF--------------------TAKVLG 507

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +V   +            ++ +QT +Y E GGQ  D G        +      +K +GI 
Sbjct: 508 VVDSNK------------IILNQTIYYPEGGGQPSDIGTITRVNGEVLNITYAQKVDGIV 555

Query: 555 VHHA---IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           +HH       +        +   ID + R  L+ NH+ATHL+  +   +LG H+ Q G+ 
Sbjct: 556 LHHVAKEDESKLDNIVGEEITGEIDSKRRDLLTRNHTATHLVIASAREVLGKHIWQAGAQ 615

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
              D  R D++H K I+  E++ IE   N  + +N PV  +  +R DA       L    
Sbjct: 616 KGLDKTRIDLSHYKRISHEEVQEIERLANKRVQENHPVNIQWYDRTDAEVKYGFKLYQGG 675

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +   D        C GTH   TG+I ++ ++    ++ G+ R+E     
Sbjct: 676 IVPGKNIRVVEIPGID-----VQACAGTHCEKTGDIGVIKLLRTERVQDGVERLEYAVSD 730

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--- 786
                +   D+ +++ +    V    +    +  + E+++ Q      + QL    +   
Sbjct: 731 SGIKKIQDDDDIIRNSSDVFGVDAEQLPRTCKRFFNEWKEQQKRIKSLEKQLAQVKIFSL 790

Query: 787 --SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                 I   N ++ ++ +VD+ +L+ +   L +K +   I ++  +       ++  + 
Sbjct: 791 ENEIANINGYNVITEVL-DVDNNQLREIAINLVEKEEVADIAILINNNGN----IVASSN 845

Query: 845 D--LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG-PNGNKADQAIAGVASFLK 897
           +  L       D+     K LGG G GG+P +AQ     + ++ D+A   V   ++
Sbjct: 846 NKILEKGMKMGDVVNDIGKFLGGRG-GGKPTLAQGAKMTDLSRKDEAFESVKEQIR 900


>gi|126460596|ref|YP_001056874.1| alanyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|189082115|sp|A3MXP1|SYA_PYRCJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126250317|gb|ABO09408.1| alanyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
          Length = 896

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 201/945 (21%), Positives = 359/945 (37%), Gaps = 165/945 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  FL FF+++GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 61  SLRDVRERFLSFFERHGHARIKRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   + A+   T+
Sbjct: 121 TISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETTEYAYRFFTE 176

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E                           G+  ++I   T  ++ W     G  G C E+ 
Sbjct: 177 EL--------------------------GIPPEEI---TFKESMWEGG--GNAGECFEVL 205

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                              R +E   LVFM +E     +   LP   +DTG GLER+  +
Sbjct: 206 V------------------RGLEAATLVFMHYE-VKDGKYVELPLKIVDTGYGLERIYWL 246

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------------- 271
           ++     YD  +F   +    +  G+     +++                          
Sbjct: 247 IKGTPTIYDA-VFGPYLAKVRERLGVPEPPRDVMAKASIYFGQMDPEVISLDKAYDIIAE 305

Query: 272 ------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                               V+ DH R+ +++IADG++P+N G GY+ R ++RRA+    
Sbjct: 306 KIGVDGKWLREVVKPQEALYVLADHSRTVAWMIADGVIPSNSGAGYLARLLIRRALR-GL 364

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           +L   +  ++ L      E+   YPE+ +A+ LI E +  E++++ + L     ++   L
Sbjct: 365 MLAGVDAPLVELFDLHLKELRYDYPEVWEARSLILELVDMEEKKYREVLKSAPAVVKRAL 424

Query: 374 SHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
               +     L+ +    LYD++GLP +++ +   + G+       F   L  +  R   
Sbjct: 425 EENRRRGKAGLDKEDLVTLYDSYGLPPEVVAEAAKSMGIEVKVPDDFYSLLASRHVRREK 484

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                     +            T+ + Y+      F  +  +V+               
Sbjct: 485 GREATLVEMAK------VADLPRTRELFYEDAYMRTFKAKVLRVI--------------- 523

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                  G+            VV DQT FYAE GGQ  DTG     G   ++ DVQ+   
Sbjct: 524 ------DGK-----------YVVLDQTAFYAEGGGQPADTGVLRHSGGVAKVVDVQRVGH 566

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I      VE  + +    +V  +D++ R  L   H+ TH+L  ++  +LG H+ Q G+ 
Sbjct: 567 VIVHV---VEGDVPQEGSEVVGEVDWERRYALMKMHTGTHVLIQSIRRVLGPHIWQAGAQ 623

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
                 R DVTH K  T  E+  IE   ND++ ++LPV  ++M R +A A     L    
Sbjct: 624 KDIPFSRIDVTHYKLPTPEEVAKIERLANDVVQRDLPVYVKVMPRNEAEAKYGFILYQGG 683

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +   D   +    CGGTH+  TGEI L+ +     I  G+ R    TG 
Sbjct: 684 VVPAREIRVVQIGP-DDEPYDVQACGGTHLRRTGEIGLIKVHKVERIADGVVRFIFTTGP 742

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A +++   + +    A+    S+  +V  V+ + +   + +                  
Sbjct: 743 HAVAYVQELERQAAEAAALGGGSKEELVEVVKRLLKRAEEAEKKARHYAELYAAALAENL 802

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
           K   V      + E+D +EL   +  L  K    ++++  +   ++ ++           
Sbjct: 803 KAEAVGQRRLAVVELDDEELAKRVALLATKRDPDLVLV--VKAGERVTIY-------TGG 853

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQS--GGPNGNKADQAIAGV 892
            +   + +   ++  G  GGG    AQ    G +  K  +AI   
Sbjct: 854 VDVGPIVKALREI--GFRGGGSKTFAQGVYAG-DVEKLKEAIRRA 895


>gi|116180548|ref|XP_001220123.1| hypothetical protein CHGG_00902 [Chaetomium globosum CBS 148.51]
 gi|88185199|gb|EAQ92667.1| hypothetical protein CHGG_00902 [Chaetomium globosum CBS 148.51]
          Length = 835

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 240/797 (30%), Positives = 358/797 (44%), Gaps = 87/797 (10%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKI 143
           MLGN+SFG YFK+ AIQ +W+LLTK + LD  RLY+T ++         D EA +LW   
Sbjct: 1   MLGNWSFGDYFKKEAIQWSWELLTKVYGLDPNRLYVTYFEGNPDMNLEPDLEAKQLWLD- 59

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL 203
            G+  D I+     DNFW M + GPCGPCSE+ +D+           +++    +E+WN 
Sbjct: 60  VGVPEDHILPGDMKDNFWEMGDQGPCGPCSEVHYDKV-GGRNAAHLVNQDDPLVVEVWNN 118

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV---- 259
           VFMQF++Q  +    LP   IDTGMG ER+ + LQ KT+NY  D+F  L    ++V    
Sbjct: 119 VFMQFDRQKDKSLMPLPAKHIDTGMGFERLVSALQNKTSNYATDIFTPLFARIQEVTGAR 178

Query: 260 -----TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
                 G          +RV  DH+R  SF IADG  P N GRGYV+RR++RR + YAR 
Sbjct: 179 SYTDKYGKDDVDGIDTAYRVAADHIRLLSFAIADGAAPNNIGRGYVVRRVLRRGVRYARK 238

Query: 315 LGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
               E       +LPAL  +MG  +PEL + +  I+E L  E+  F  TLDRG    +  
Sbjct: 239 YFQAEIGSFFSSILPALVDQMGEQFPELKKKQEDIKEILDEEEVAFAVTLDRGEKQFEKY 298

Query: 373 --LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
             L+    +  L+G   ++LYDT G P D+ + +   RGL           +E  R +AR
Sbjct: 299 AALAVKSGENKLSGADVWRLYDTFGFPEDLTKLMAEERGLTID-----EAEVEVAREKAR 353

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
             S  +                    F   ++ + ++                    +  
Sbjct: 354 EASKAVKEAVQ--------------TFPKLNVHQIAELENTVNLPRPDSEAKYKKGDIKG 399

Query: 491 IVKAIVQQGEI---VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
            V+ +    E     +E      + ++ D+T FYAE+GGQ+ DTG  + DG+        
Sbjct: 400 KVQLVFTGSEFRKTSKELPPKTPLGLLLDKTNFYAESGGQVADTGRILIDGVAEFKVLDV 459

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           ++  G  VH+  +E G L     ++   D   R+ +  NH+ TH+L+HAL  +LG  V+Q
Sbjct: 460 QEFGGYIVHNGYLEYGELTAGDEVICEYDELRRQPIRNNHTGTHVLNHALREVLGEEVNQ 519

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAA 666
            GS +  D LRFD +H   ++  E+K IE   N+ I ++     + +         G  A
Sbjct: 520 KGSLVDQDKLRFDFSHKSQVSLEEIKKIEAMSNEDIQRDFKTYAKDVDLSLAREIEGVRA 579

Query: 667 LLGTKYNDRVR-----------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           + G  Y D VR           + + +  +    S   CGGTHV STG I  L IV ES 
Sbjct: 580 VFGETYPDPVRVVSVGVDVDELLKNPKNPEWRKVSVEFCGGTHVDSTGAIKDLIIVEESG 639

Query: 716 IRAGIRRIEAITGQ-------------------RARSHLMGQDEKLKSLASFLKV----- 751
           I  GIRRI A TG                    +A      +   +K+ A  L       
Sbjct: 640 IAKGIRRIVAYTGDGAHQAQRDAKTFSEKLEHIQALEFGPQKAADIKAAAVELDALTISA 699

Query: 752 -SQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVD 805
            ++ ++  R  +I     +E +K Q   +K  L    +     +  +  F    +    +
Sbjct: 700 LTKEDLRQRFAKIQKEVVDEQKKRQKAESKTALDTVQDHFKKEENKEAKFFVGHLPISAN 759

Query: 806 SKELKSVMDALQKKIQS 822
           SK L  V    + K + 
Sbjct: 760 SKALADVQTYYKSKDKD 776


>gi|322368072|ref|ZP_08042641.1| alanyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320552088|gb|EFW93733.1| alanyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 923

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 208/978 (21%), Positives = 362/978 (37%), Gaps = 201/978 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++S +R  FL FF+++ HE +    +        ++ T + +  F+ + T G+  P    
Sbjct: 61  SLSEMREVFLSFFEEHDHERIDPYPVAANRWRDDVLLTQASIYDFQPLVTSGKTPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----------G---YFKERA 106
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F                Y+K+  
Sbjct: 121 LTISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNVREDAEEEYAYDGEVYWKDET 176

Query: 107 IQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           +                +L+ +V  + +E                  IT  ++ W     
Sbjct: 177 VAYC------------DQLFESVGADLDE------------------ITYIEDPWVGG-- 204

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--------I 218
           G  GP  E+ +                  +  E+  LVFM  EQ    E           
Sbjct: 205 GNAGPAIEVIY------------------KGAELATLVFMSMEQDPDGEYEMKDGNRYSP 246

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDI---DLFKHL----------------------- 252
           +    +DTG GLER   + Q     Y+    D+   L                       
Sbjct: 247 MDTYIVDTGYGLERWTWMSQGTPTVYEAVYPDMIAFLKENADINLSEEEEELVHRAAKLA 306

Query: 253 ----IQASEQVTGMKYEGNNI---------------VNHRVIVDHLRSSSFLIADGILPA 293
               I  +E +   +                          I DH R+ +++  DGI+P+
Sbjct: 307 GHMDIDEAEDMDAARDNIAEKVGVSTTELVELMEPLETIYAIADHSRALAYMFGDGIVPS 366

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N   GY+ R ++RR       +G   PL   L+      +G       + +  I + +R+
Sbjct: 367 NVATGYLARMVLRRTKRLCDTVGVDAPL-DELVDMQAERLGY------ENRDTIRDIVRT 419

Query: 354 EDERFGKTLDRGLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E E++ +TL++G   +  +   H  + + +  +   +LYD+HGL  D++++I    G + 
Sbjct: 420 EVEKYRETLEQGGRRVRRLAKRHAEEGKPIPTETLVELYDSHGLQPDMVEEIADEFGASV 479

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
                F   + E+         G  +   E+           T+ + Y+    + F    
Sbjct: 480 SVPDDFYSLVAERHD-------GGQAFEEEESEDDRFTDLPKTERLYYEDQYRTDF---- 528

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            ++V  +  + E           +VV DQT FY E GGQ GD G
Sbjct: 529 ----------------EAVVLDVFDREE---------GYDVVLDQTMFYPEGGGQPGDHG 563

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   +++TD Q     +           +     +   ID Q RR+L  +H+ATH+
Sbjct: 564 TLSTDEKTVKVTDTQIDDGVVLH----HTDDPVDKGSIVRGQIDAQRRRRLMRHHTATHI 619

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           + HA   ILG H+ Q G+    D  R DV H + I     K IE   N+I+ +N  V   
Sbjct: 620 VVHAARQILGDHIRQAGAQKGTDSSRIDVRHYERIDRETAKQIELLANEIVMENTTVQQE 679

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             NR +A       L          +  +   +        CGGTHV  TG++  + +++
Sbjct: 680 WPNRHEAEEEFGFDLYQGGIPAGTNIRLIHVAED----VQACGGTHVRRTGDVGCIKLLN 735

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
              ++ G+ R+    G  A       ++ L + A  L VS   V    +  +EE++    
Sbjct: 736 TERVQDGVERLTFAAGDAAIEATQETEDYLGAAADTLDVSPSEVPETADRFFEEWKARGK 795

Query: 773 IHAKRKLQLNVEDLSCH------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                K QL     S        ++ D   +   I + D +EL++  +A+ +    G I 
Sbjct: 796 QIEDLKEQLAEARASGAGGGEEIEVGDTTAVIQRI-DTDMEELRATANAMAE---DGKIA 851

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGP 880
           ++G   +  A  ++ + +      NA  +    A  +G                AQ GGP
Sbjct: 852 VIGSGADG-AQFVVAIPDG--SSVNAGSVVGELASFVGGGGGGP-------ADFAQGGGP 901

Query: 881 NGNKADQAIAGVASFLKK 898
           + +K D+A+      LK+
Sbjct: 902 DADKLDEALESAPDVLKQ 919


>gi|332180537|gb|AEE16225.1| alanyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 595

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 157/472 (33%), Positives = 256/472 (54%), Gaps = 22/472 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R+ ++EFF+   H  +   SLIP NDPT++FT +GM P      G+  P  + +
Sbjct: 1   MTANELRSKYIEFFKSKNHVEISGKSLIPENDPTVLFTTAGMHPLVPYLMGEPHPAGKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119
              QKC+R G    D+++VG  + H TFFEMLGN+S G YFK+ +I  +++ LTK     
Sbjct: 61  VDYQKCIRTG----DIESVG-DSSHLTFFEMLGNWSLGDYFKQESIGFSFEFLTKPEYLH 115

Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           +   +L +TV+        D+E+   W +  G+  ++I  +  +DN+W    ETGPCGP 
Sbjct: 116 IPLEKLSVTVFAGDESVPRDDESAARW-EQLGIPRERIHFLPRSDNWWGPAGETGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EIF D G+              +YIEIWN VFMQ+ +        L    +DTGMG+ER
Sbjct: 175 TEIFIDTGKRACSENCRPGCGCGKYIEIWNNVFMQYNKDADGVYTKLAHPCVDTGMGVER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD-- 288
              +LQ K + Y+ ++F  LI   E++TG  Y  +     + R+I DH+R+++F++ D  
Sbjct: 235 TVAMLQGKKSVYETEVFTPLIAVIEKLTGKTYGTDEASDTSIRIICDHVRAATFILGDPK 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+LP+N G GYVLRRI+RRA+ + R LG     +      +      AYPE+   + LI 
Sbjct: 295 GVLPSNVGAGYVLRRIIRRAVRHGRKLGLDGEFLKEPAQTVIGMYRDAYPEVDAKRELIL 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             L+ E+++F +TL +G    D ++ +L     +++ G VAF+LYDT G P+++ +++  
Sbjct: 355 AELQREEQKFLETLKKGEAEFDKLVPNLLKNPAKVIPGRVAFRLYDTFGFPVELTEELAG 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
             GL  ++   F+ A ++ +  +RA S  +  G          + + AT  +
Sbjct: 415 EHGLT-VNREEFDAAYKKHQELSRAGSEQVFKGGLADHSEITTKYHTATHLL 465



 Score = 97.5 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 5/167 (2%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +         +       +    +  H+ATHLLH AL  +LG H++Q GS IT + LRF
Sbjct: 432 HQELSRAGSEQVFKGGLADHSEITTKYHTATHLLHKALKMVLGDHIAQKGSNITAERLRF 491

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +H  P+T  E++ +ED VN+ I ++L V   +M+ E+A   GA AL G KY  +V+V 
Sbjct: 492 DFSHPAPMTKEEIQRVEDIVNEQIRRDLKVTMEVMDLEEAKKGGATALFGEKYESKVKVY 551

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           ++     G  S  +CGG HV  TG I    I  E S  AG+RRI A+
Sbjct: 552 TI-----GDFSKEVCGGPHVEHTGLIGTFKIQKEQSSSAGVRRIRAV 593


>gi|302348046|ref|YP_003815684.1| Alanyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
 gi|302328458|gb|ADL18653.1| Alanyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
          Length = 913

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 202/924 (21%), Positives = 364/924 (39%), Gaps = 158/924 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            V+  R  F++FF ++GH  +    ++      L  T + +V F+  + +G   P    +
Sbjct: 58  TVAEARRKFIDFFARHGHTPIQPRPVVARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R      D+DNVG T  RH T FEM  + +F       Y+K+  ++ A++  T
Sbjct: 118 VISQPCIRLE----DIDNVGLTIGRHLTTFEMAAHHAFNYPDKQVYWKDETVRYAYEFFT 173

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  +    +   V+                           +++W     G  GP  E+
Sbjct: 174 KELGIPGDLI---VF--------------------------KESWWEGG--GNAGPSFEV 202

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++         LP   +DTG G+ERMA 
Sbjct: 203 TV------------------GGLELATLVFMQYKIDENGNYVELPLKIVDTGYGVERMAW 244

Query: 236 VLQEKTNNYDI--------------------DLFKHLIQASEQ----------------- 258
             Q+    +                      +      +A+ +                 
Sbjct: 245 FTQKTPTAFHAIYGQLLDKARSELGLPRPPEEYLWAAFRAAAKFNPDVEGSLDAFYQQVS 304

Query: 259 ------VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                 ++ ++           ++DH ++ + ++ DG++P+N G GY+ R ++RRA+   
Sbjct: 305 KTTGAPLSEVRQVLEREARLYSVLDHSKTIAMMLGDGVVPSNSGEGYLARLVIRRALRQL 364

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL      +  ++       GS +P+L + +  I E +  E++R+   L RG  L+   
Sbjct: 365 RLLN-ENYDLAKIVDMQIDLWGSDFPQLKENRSYIIEAVGLEEDRYKDLLRRGEKLVLRE 423

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           LS     E L      KLYD++G+P ++  +    +G+  +   +F   +  +       
Sbjct: 424 LSQGASLETL-----IKLYDSYGIPPEVAAEAAAKKGITVLVPRNFYSLVAARHRAPAKV 478

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                  +  +   S   ++  T+ + +       F  +   V  +              
Sbjct: 479 RSIEEKSSLPEDVVSWARQFKPTELLFHKDPYARSFTAKILGVKGE-------------- 524

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                               VV D T FYA  GGQL D G     G R  + DVQK  + 
Sbjct: 525 -------------------YVVLDSTIFYATGGGQLNDVGVMEICGERYNVVDVQKAGDV 565

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I              E      ID+  R +L  +H+ATH++  A   +LG+HV Q G+  
Sbjct: 566 IVHKLDRAVDNASCGE--ARGEIDWVRRFRLMRHHTATHIILGAARRVLGNHVWQAGAEK 623

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--T 670
           TP+  R D+TH KP+T  E++ IE+  N +I +  PV+   M+R +A +     L     
Sbjct: 624 TPEKARLDITHHKPLTREEVRRIEELANRVIDERRPVLQAYMDRNEAESKYGFVLYEGGV 683

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
               ++RVV V+  D        C GTHV++TG+I  + I++   I+ G+ R+E + G R
Sbjct: 684 PMERKIRVVEVQGWD-----VEACFGTHVTNTGDIGGIKIINVEKIQDGVVRLEFVAGTR 738

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLNVEDLS 787
               +   ++++  L+S L    G  + +V+E+ +E  KL+      +   L      + 
Sbjct: 739 VPEEMAALEDRMTQLSSELGSQGGEELNKVKELKDELMKLKESVKAYRSLWLSTAKGLIV 798

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             K+  +   +    E D K  +  +  L  +  + +I +  + ++K     + +  +  
Sbjct: 799 SSKVNGLIVATLEYPEPDVKSARDALKELTDEFINSVITVA-VKEDKGYRYELGIGREAS 857

Query: 848 DRFNAVDLARLSAKVL---GGGGG 868
              +A  +    +  L   GGG G
Sbjct: 858 RILSAEAILAAISSELKVTGGGRG 881


>gi|218680942|ref|ZP_03528839.1| alanyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 556

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 294/581 (50%), Positives = 397/581 (68%), Gaps = 31/581 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ   + +D DLF+ 
Sbjct: 2   EDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQGVQSVFDTDLFRT 61

Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
           L  A E   G+K       +HRVI DHLRSS+FLIADG+LP+NEGRGYVLRRIMRRAM +
Sbjct: 62  LTGAIEDAVGVK--AAGSASHRVIADHLRSSAFLIADGVLPSNEGRGYVLRRIMRRAMRH 119

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
           A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF KTL+RGL LL  
Sbjct: 120 AQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFRKTLERGLSLLSD 179

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
             + L K ++L+G+ AFKLYDT+G PLD+ QD L AR   G+DI  F  A++ Q++ AR+
Sbjct: 180 ATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFTDAMQRQKAEARS 238

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           H  G G   TE +WF LK+K+GAT+F+GYD                       T   + +
Sbjct: 239 HWAGSGEKATETVWFELKDKHGATEFLGYD-----------------------TEAAAGV 275

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V+AIV+ G +  EA +G KV++V +QTPFY E+GGQ+GDTG    D  ++ ++D QKK E
Sbjct: 276 VQAIVKDGAVATEAKAGDKVQIVVNQTPFYGESGGQMGDTGVISSDHGKIDVSDTQKKGE 335

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G+FVH   V  G+ +   ++VLT+D+  R +L  NHSATHLLH A+  +LG+HV+Q GS 
Sbjct: 336 GLFVHSGTVVEGVFKAGDAVVLTVDHARRSRLRANHSATHLLHEAMREVLGTHVAQKGSL 395

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           + P+ LRFDV+H KP+++ ELK +E+  N+I+ QN PV TR+M+ +DAIA GA AL G K
Sbjct: 396 VAPERLRFDVSHPKPMSAEELKVVEEMANEIVLQNAPVTTRLMSVDDAIAEGAMALFGEK 455

Query: 672 YNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y D VRVVS+       +    +S  LCGGTHVS+TG+I L+ I+ ES++ AG+RRIEA+
Sbjct: 456 YGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGESAVGAGVRRIEAV 515

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E 
Sbjct: 516 TGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALMDER 556


>gi|320536417|ref|ZP_08036454.1| alanyl-tRNA synthetase [Treponema phagedenis F0421]
 gi|320146727|gb|EFW38306.1| alanyl-tRNA synthetase [Treponema phagedenis F0421]
          Length = 600

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 175/610 (28%), Positives = 291/610 (47%), Gaps = 49/610 (8%)

Query: 1   MS---NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M        +R  +++FF+  GH  +   SLIP NDPT++FT +GM P      G+  P 
Sbjct: 1   MKMQITADELRRKYIDFFKSKGHVEISGKSLIPDNDPTVLFTTAGMHPLVPYLMGEPHPS 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
              +T  QKC+R G    D+D VG    H TFFEMLGN+S G YFK+ AI+ +++ LT  
Sbjct: 61  GTRLTNYQKCIRTG----DIDEVG-DAAHLTFFEMLGNWSLGDYFKKEAIEYSFEFLTDK 115

Query: 116 KEFDLDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWS-MAETGP 168
           K   +    L +TV+  DE      E+ + W+++ G+S ++I  +   DN+W    ETGP
Sbjct: 116 KYLGIPIDLLSVTVFAGDEQVPKDTESAETWQRL-GISKERIYFLPRKDNWWGPAGETGP 174

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGP +E+F D G+   G          +YIEIWN VFMQ+ +        L +  +DTGM
Sbjct: 175 CGPDTEMFIDTGKDACGADCKPGCHCGKYIEIWNDVFMQYHKNKDGSYSELTRHCVDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G+ER   +LQ K + Y+ ++F  LIQ  E+++G  Y     + ++ R+I DH+R+++F++
Sbjct: 235 GIERTVAMLQGKKSVYETEIFTPLIQTVERLSGKTYGQNEADAISIRIICDHVRAATFIL 294

Query: 287 ADG--ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           +D   + P+N G GYVLRRI+R A+ + + LG     +      +  +   AYPEL + +
Sbjct: 295 SDPKSVAPSNVGAGYVLRRIIRSAVRHGKKLGIEGCFLSTPAKVVIGQYNGAYPELQEKE 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQ 402
             I  +L +E+++F +TL +G    + +L +L     +I+ G +AFKLYDT+G P+++ +
Sbjct: 355 TEIYASLEAEEKKFLETLKKGETEYEKMLPNLLKNPKKIIPGRLAFKLYDTYGFPIELTE 414

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF----- 457
           ++    GL  ++   F++A ++ +  +RA S  +  G            + AT       
Sbjct: 415 ELARESGL-QVNREEFDEAFKKHQELSRAGSEQIFKGGLADHSEQTTAYHTATHLLHKAL 473

Query: 458 ---IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
              +G  + +    +  +R       P  +T    + V+ IV +             ++ 
Sbjct: 474 RMVLGDHVEQKGSNITAERLRFDFSHPKPMTPEEKAEVERIVNE-------------QIQ 520

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D    +        D     G                     +    G    E +  L 
Sbjct: 521 ADLPVSF---EVMSLDEAKKSGAMALFGEKYEDSVKVYSIGSFSKEVCGGPHVEHTGQLG 577

Query: 575 IDYQNRRQLS 584
                + Q S
Sbjct: 578 HFVIKKEQSS 587



 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 67/147 (45%), Positives = 87/147 (59%), Gaps = 5/147 (3%)

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           +  Q +  H+ATHLLH AL  +LG HV Q GS IT + LRFD +H KP+T  E   +E  
Sbjct: 455 HSEQTTAYHTATHLLHKALRMVLGDHVEQKGSNITAERLRFDFSHPKPMTPEEKAEVERI 514

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN+ I  +LPV   +M+ ++A  SGA AL G KY D V+V S+     G  S  +CGG H
Sbjct: 515 VNEQIQADLPVSFEVMSLDEAKKSGAMALFGEKYEDSVKVYSI-----GSFSKEVCGGPH 569

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEA 725
           V  TG++    I  E S  AG+RRI A
Sbjct: 570 VEHTGQLGHFVIKKEQSSSAGVRRIRA 596


>gi|328701423|ref|XP_003241593.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 974

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 221/855 (25%), Positives = 362/855 (42%), Gaps = 61/855 (7%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + + IR  F+++F ++N H+ + SS ++P NDPT+ F N+GM  FK++  GQ       V
Sbjct: 22  SSNEIRKRFIDYFVKENDHKYIKSSPVVPYNDPTIAFVNAGMCQFKSVLLGQRTLAANCV 81

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEFDL 120
              QKC+R GGKHNDLD VG    HHTFFEMLGN+SFG Y K  A  LAW+LLT   F++
Sbjct: 82  ANSQKCIRVGGKHNDLDIVGSDGYHHTFFEMLGNWSFGHYGKAEACHLAWNLLTLPPFNI 141

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              +LY TV+        + D E  ++WK   G++ D I+    NDNFW M ETGPCGPC
Sbjct: 142 PTEQLYCTVFNGDRTLDVESDNETLQIWKN-IGVNDDHIVMNGVNDNFWEMGETGPCGPC 200

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI  D               G+  IE+WN+VF+Q+ ++       LP   IDTGMGLER
Sbjct: 201 TEIHIDYPPS----------GGKNLIELWNIVFIQYSREKN-TMRKLPNYFIDTGMGLER 249

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVN-----HRVIVDHLRSSSFLI 286
           +  VLQ+KT+ YD DLF  +         + KY G          +RV+ DH R  +  +
Sbjct: 250 LTMVLQDKTSTYDTDLFSSIFNIIFNACRISKYTGLYDGTSLDTYYRVLADHGRMITVAL 309

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA---RLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           +D +LP+   + + LRR++R++   A     +     L+  +   +   +G+ YPELI+ 
Sbjct: 310 SDNMLPS---QNHKLRRLIRKSFILAETNFKIQPGYTLICDIANEVSNSLGNVYPELIKN 366

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              ++  ++ E   F K           ++      +  +        +  G        
Sbjct: 367 NEKVKHLIKHEYAIFNKLRMSVSKDWKIMVEECPMLKSFDP-----YEECTGFVPACNYL 421

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF------ 457
           I             ++    E+++  R   +        +++  LK+    T        
Sbjct: 422 IKHKNMSNIPAFTLYDAFGLEKKTIGRLAEVMGKPVNWNELYEKLKKLQTKTIKHTERKS 481

Query: 458 -IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEE---AVSGQKVE 512
            I               +V+       L+  + + + AIV   G IV E      G  V 
Sbjct: 482 NIYMTGNIPKTDDSFKYEVIRHNNESYLSPVLIAKLLAIVDINGNIVTEPDIKQQGDLVS 541

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI---TDVQKKAEGIFVHHAIVERGILRTEM 569
           +V D+T FY +AGGQ  D G    +  ++      D  ++   +  H    +  IL +E 
Sbjct: 542 LVLDKTSFYCKAGGQQNDIGIVKTNNGKVFDVIGVDKIEENGVVLHHINSRDWPILLSEN 601

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            L + +D  NR  L   HS+ H+L+  L+  L      +                +  + 
Sbjct: 602 ELHVQVDSNNRLGLMRAHSSVHILNSVLNLYLVVTTQLSSCVKKDFMSFTFALFGQTFSP 661

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGV 688
            +   IE+ V  +I   + V    +   D        L G  Y D V ++ +    D   
Sbjct: 662 KDALVIEEKVKSVIQSAVSVKRTTVTSNDLNQINVTLLPGEVYPDEVHLIDMYSNVDDSY 721

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSL 745
            S   C GTHV +T +++    + +         I A+TG     AR        K   +
Sbjct: 722 ISREACCGTHVQNTLDVIDF-CIVQYKCNINECTIMAVTGPLCTNARVFGQQLLGKSNFV 780

Query: 746 ASFLK-VSQGNV-VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
              +   +  N+   +V  + +   +L+              +       +  +   I +
Sbjct: 781 EDLVNSTNLNNISPTKVNLLMDNMNQLKSELKSISQNYIPLKVQIQINKKIFAIERKIQK 840

Query: 804 VDS-KELKSVMDALQ 817
           +   K+++ + DA++
Sbjct: 841 LTKEKKMQILGDAVK 855


>gi|327310071|ref|YP_004336968.1| alanyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
 gi|326946550|gb|AEA11656.1| alanyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
          Length = 893

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 206/947 (21%), Positives = 351/947 (37%), Gaps = 163/947 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  FL FF++ GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 56  SIRDLRERFLSFFERRGHTRIKRYPVVARWRDDVFLVGASIYDFQPWVTSGAVPPPANPL 115

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+D VGR+ RH T FEM+ + +F       Y+     + A++  TK
Sbjct: 116 TISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIGETTEYAYEFFTK 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +           EDE                   +T  ++ W     G  G   E+ 
Sbjct: 172 ELGI----------AEDE-------------------VTFKESVWEGG--GNAGESFEVL 200

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                              R +E+  LVFM +E     +   LP   +DTG GLER+  +
Sbjct: 201 V------------------RGLEVATLVFMHYE-VKDGKYVELPLKIVDTGYGLERIYWM 241

Query: 237 LQEKTNNYDI--------------------DLFKHLIQASEQV----------------- 259
            +     YD                     DL         Q+                 
Sbjct: 242 AKGSPTVYDAVFGPFLSAARQRLGVPEPPADLLGKASVFFGQMDPEVLGLEKAYDEVAKR 301

Query: 260 -----TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
                   +          V+ DH R+ S+++ADG++P+N G GY+ R ++RRA+    L
Sbjct: 302 IGVSPQEFRDVMRPQEALYVLADHSRTVSWMVADGVVPSNTGAGYLARLLIRRALRGLWL 361

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
            G   PL+  L       +   YPE+ +++ +I E +  E++++ + L     L+   L 
Sbjct: 362 AGIEAPLV-ELFDLHLKYLKEDYPEVWESRDVILELIDLEEKKYKEVLKAAPSLVKKALE 420

Query: 375 HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
             G+   L+ +   +LYD+ G+P ++ +D     G        F   L  +     A   
Sbjct: 421 KAGRRA-LSAEDLVELYDSFGVPPEVARDAARKLGADAEVPDDFYSRLAARHQ---ARKA 476

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
           G G      I  +       T+ + Y+                            S V  
Sbjct: 477 GGGEAAKVPIELAKVADLPRTRELFYEDPYRR--------------------SARSKVLR 516

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           ++                VV D T FY E GGQ  D G     G   ++ DVQ+    I 
Sbjct: 517 VI------------DGRYVVLDATVFYPEGGGQPADRGVLRHSGGEAKVVDVQRLGNVII 564

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                      R    +   ID+  R  L   H+ TH+L  ++  +LG H+ Q G+    
Sbjct: 565 HVIEGPAP---REGEEVYGEIDWDRRISLMRMHTGTHVLIQSIRRVLGKHIWQAGAQKDV 621

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKY 672
              R DVTH K  T  E+  IE   N ++  NLPV   IM R +A A     +       
Sbjct: 622 PYSRLDVTHYKLPTEKEIAEIERLANQVVMSNLPVKALIMPRNEAEAKFGFIIYQGGVVP 681

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
              +R++ +  ED   +    CGGTH+SSTGEI  + IV    I  G+ R    TG+ A 
Sbjct: 682 AREIRILRIGPED-SPYDVQACGGTHLSSTGEIGPIKIVRVERIADGVIRFIFTTGKYAV 740

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            ++   +  L ++A  L   + +V  ++ +  ++   L+  +  +KL  +  +L   ++ 
Sbjct: 741 DYIQKMEADLSAVAKALGSGKEDVPAQLAKYLDKAADLERRY--KKLAASYAELLAERL- 797

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
                   +  +   +L      L  +  +  +     SK  +  +++   + L + ++ 
Sbjct: 798 -------RVEGLPKADL--AYLELDDEDLAKAVAAHATSKNPRLLLVVRRGDKL-ELYSG 847

Query: 853 VDL-ARLSAKVL--GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++     A  L   G  GGG    AQ  G      +  +  + + L
Sbjct: 848 REIDVGPIAAELRKHGFKGGGSKTFAQ--GVYQGDVEAILKALRNLL 892


>gi|255527855|ref|ZP_05394703.1| alanyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255508466|gb|EET84858.1| alanyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 662

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 232/690 (33%), Positives = 378/690 (54%), Gaps = 41/690 (5%)

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIV 276
           L   +IDTGMGLER+AT++Q   + +++D  + ++    +V  ++Y  +    ++ RVI 
Sbjct: 1   LKNPNIDTGMGLERIATIMQGTNSIFEVDTIRAILDEVSKVAKIEYGKDEKSDISMRVIT 60

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH+RS SF+I+DGILP+NEGRGYVLRR++RRA  + + LG     +  L   +       
Sbjct: 61  DHVRSVSFMISDGILPSNEGRGYVLRRLLRRAAKHGKSLGINNAFLYKLTDMVIDNSCGN 120

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTH 394
           Y EL + +  I++ ++ E+ERF +T+D G+ +L+  + +L    + IL+G+ AFKLYDT+
Sbjct: 121 YAELAEKRDYIKKVIKLEEERFDETIDSGMQILNEFIENLKINNETILSGEKAFKLYDTY 180

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+++ ++IL  + +  +D+  FN+ ++ QR RARA          E    +       
Sbjct: 181 GFPIELTEEILEEKDMK-VDLEGFNKEMQNQRERARAAREETNYMGAEDTILNKIPLEIE 239

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           T+F GYD L                         +S VK +++  E V   V G K  +V
Sbjct: 240 TKFNGYDTL-----------------------HTTSKVKILIKNEEFVSTMVEGDKGVIV 276

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            + TPFYAE GGQ+GD G    D  + ++ D +K   G  +H   V  G +  +  + L 
Sbjct: 277 TENTPFYAEMGGQIGDHGIISTDSFKAEVVDCKKNVAGKILHFVKVLSGTIGVDHQVTLN 336

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ++   R  +  NH+ATHLL+ AL  +LG HV Q+GS +  + LRFD  H +  +  ELK 
Sbjct: 337 VNEARRNNIRRNHTATHLLNEALRKVLGEHVHQSGSYVDDERLRFDFNHFEAPSHEELKK 396

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           +E  VND I + L V T+ M+ E+A  +GA AL   KY D VRVVSV     G  S  LC
Sbjct: 397 VEALVNDEIVKVLNVQTQSMSLEEAKETGAIALFDNKYKDEVRVVSV-----GDFSKELC 451

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHVS++GEI L  I+SE+ + AGIRRIEA+TG +A +++  +++ +K + + L+ S+ 
Sbjct: 452 GGTHVSNSGEIGLFKIISEAGVAAGIRRIEAVTGPKAIAYVEAKNDLIKEIGNKLRCSEK 511

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKEL 809
            ++ +++    E ++     A+ K +L             ++  +   + ++ +VD   L
Sbjct: 512 EIIHKLDLQALELKEKDKEIAELKSKLAGSAEDEILNGFQEVKGIKLFTGVLKDVDGNAL 571

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           + + D ++ K    +++L  +  E K   + + T++ + +  +   + +  A + GGGG 
Sbjct: 572 RDLADKIRNKGGECVVVLGSVV-EGKVQFVSMTTKEAIAKGVHCGKIIKEVAAIAGGGG- 629

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGRP MAQ+GG    K + AI    S L+K
Sbjct: 630 GGRPDMAQAGGKLPEKVEDAIGSCVSILEK 659


>gi|257456350|ref|ZP_05621547.1| alanyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257446436|gb|EEV21482.1| alanyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 600

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 166/519 (31%), Positives = 273/519 (52%), Gaps = 30/519 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ ++ FF+   H  +   S+IP NDPT++FT +GM P      G+  P    +T
Sbjct: 6   TADELRSKYIAFFKSKNHTEISGKSVIPENDPTVLFTTAGMHPLVPYLMGEPHPAGTRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
             QKC+R G    D+D VG    H TFFEMLGN+S G YFK+ AI  +++ LT     D+
Sbjct: 66  DYQKCIRTG----DIDAVG-DASHLTFFEMLGNWSLGDYFKKEAIGYSFEFLTSPQYLDI 120

Query: 121 DQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCS 173
               L +TV+  D+      E+ ++W+K+ G+  ++I  +   DN+W    ETGPCGP +
Sbjct: 121 PIDLLSVTVFAGDDKVPRDTESAEIWEKL-GIPKERIHFLPREDNWWGPAGETGPCGPDT 179

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E+F D G+   G          +Y+EIWN VFMQ+ ++       L +  +DTGMG+ER 
Sbjct: 180 EMFIDTGKPACGHECRPGCSCGKYVEIWNDVFMQYRKEQDGSYHTLERHCVDTGMGIERT 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG-- 289
             +LQ K + Y+ ++F  LI A E++TG +Y  +    V+ R+I DH+R+++ ++ D   
Sbjct: 240 VAMLQGKKSVYETEIFTPLIAAIEKITGYQYGSDAEKDVSVRIICDHIRAATVILGDPKA 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+N G GYVLRRI+RRA+ + R LG     +      +  +   AYPEL   ++ I  
Sbjct: 300 VVPSNVGAGYVLRRIIRRAVRHGRKLGIEGTFLAIPAKVVIEQYKGAYPELKDKEVTITA 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            L +E++RF +TL +G    + +  +L     +I+ G +AFKLYDT+G P+++ +++   
Sbjct: 360 ELEAEEKRFLETLKKGEAEYEKMKPNLLKNPKKIIPGRLAFKLYDTYGFPIELTEELARE 419

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF--------IG 459
            GL  +D   F +A ++ +  +RA S  +  G            + AT          +G
Sbjct: 420 SGLT-VDRAEFEEAFKKHQELSRAGSEQIFKGGLADHSEQTTAYHTATHLLHKALRMVLG 478

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
             + +    +  +R       P  +T    + V+ IV +
Sbjct: 479 DHVEQKGSNITAERLRFDFSHPQPMTAEEKAEVERIVNE 517



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/148 (45%), Positives = 87/148 (58%), Gaps = 5/148 (3%)

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           +  Q +  H+ATHLLH AL  +LG HV Q GS IT + LRFD +H +P+T+ E   +E  
Sbjct: 455 HSEQTTAYHTATHLLHKALRMVLGDHVEQKGSNITAERLRFDFSHPQPMTAEEKAEVERI 514

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN+ I  +LPV   IM  E+A  +GA AL G KY D V+V S+     G  S  +CGG H
Sbjct: 515 VNEQIQADLPVTMEIMPLEEAKRAGAMALFGEKYEDTVKVYSI-----GNFSKEVCGGPH 569

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V  TG +    I  E S  AGIRRI A+
Sbjct: 570 VEHTGVLGKFSIQKEQSSSAGIRRIRAV 597


>gi|14601887|ref|NP_148431.1| alanyl-tRNA synthetase [Aeropyrum pernix K1]
 gi|6707749|sp|Q9Y9X3|SYA_AERPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|5105865|dbj|BAA81177.1| alanyl-tRNA synthetase [Aeropyrum pernix K1]
          Length = 900

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 189/918 (20%), Positives = 350/918 (38%), Gaps = 153/918 (16%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQA 60
            +V   R  FL FF+K+GH  +P   ++      L  T + +V F+  + +G   P    
Sbjct: 44  MSVGEAREAFLSFFEKHGHTRVPPRPVVARWREDLYLTIASIVVFQPHVTSGLVPPPANP 103

Query: 61  VTTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
           +   Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE  ++LA++  
Sbjct: 104 LVISQPSIRLE----DIDNVGITIGRHLTSFEMAAHHAFNYPDRQVYWKEETVRLAFEFF 159

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T+   +    +   V+                           +++W     G  GP  E
Sbjct: 160 TQVLGIPPELI---VF--------------------------KESWWEGG--GNAGPSFE 188

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +                      +E+  LVFM++ +        +P   +DTG G+ER+A
Sbjct: 189 VAV------------------GGLELATLVFMKY-RVVDGRYEEIPLKIVDTGYGVERLA 229

Query: 235 TVLQEKTNNYD------IDLFKHLI---------QASE---------------------- 257
              Q+    +       +D F+ ++           +                       
Sbjct: 230 WFTQKTPTAFHAIYGSLVDDFRRMLGVEKPDENVMWAAFRVAGFLDPEDPESLRNYYQTV 289

Query: 258 ------QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                  V  ++           ++DH ++ + ++ DGI+P+N G GY+ R ++RRA+  
Sbjct: 290 ASLAGGDVETVRSILTREARLYSVLDHTKTIALMLGDGIVPSNSGEGYLARLVVRRALRQ 349

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
             LL    PL+  +       M    P+L +    I + +  E+ERF   L +   +++ 
Sbjct: 350 LSLLNAEVPLVDLVERQARFWMRDF-PQLKENLDYILDAVSLEEERFRDVLRKARSIVER 408

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSR-AR 430
               L + + L  D   +LYD+ G+P +I  +I  +RG       +F   +  +     +
Sbjct: 409 ---ELKRKKRLGVDDLIRLYDSMGVPPEIAAEIAASRGAPVEVPHNFYSLVAARHRGPEK 465

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
               G       +       ++G T+ + ++      +      V  +            
Sbjct: 466 IRGYGFDETGLPRDVEEWARRFGETRRVFHEDPYAKAWKARVLGVKGR------------ 513

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
                                 +V D T FY   GGQ+ DTG    +  + +I DVQK  
Sbjct: 514 ---------------------YLVADSTIFYPTGGGQIHDTGVIRVNNQQYRIIDVQKVG 552

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           + I   H             + + ID++ R  +  +H+ TH+L  A   +LG H  Q G+
Sbjct: 553 DAIV--HVAEREIAAEPGDEVWMEIDWERRYSIMRHHTVTHVLIAAARRVLGRHAWQAGA 610

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
             T +  R D+TH +P+T  +++ +E+ VN +I +   V   ++++ +A       +   
Sbjct: 611 EKTEEKGRLDITHHRPLTRDDIEKLENVVNQVIRERRRVWEDMVDKNEAEEKYGFTIYQG 670

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                 R+  V  ED        C GTHV +TGEI    I+S S I+ G+ R+E + G R
Sbjct: 671 GVPMEKRLRLVFVEDW---DVEACFGTHVRNTGEIGGFKIISYSRIQDGVVRLEYVAGDR 727

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-----RKLQLNVED 785
              +    +E+L  +   +K  +G    RV+ +     + +    +      K       
Sbjct: 728 VAIYARELEERLARIGDAVKAPRGQEEARVKGLIASLEQAREDLKRYRDYWVKTIEEAYI 787

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               ++  V  ++    E D + ++ ++  L  + +  I  LV +  E    V I     
Sbjct: 788 SRARRVNGVKVLAVESLEKDRRTVQEILRKLTSRHEDLIAALV-VENEGNTQVEIAAGPK 846

Query: 846 LLDRFNAVDLARLSAKVL 863
             ++ +   L ++  K +
Sbjct: 847 AAEKVDLGALVKIVIKKV 864


>gi|227872330|ref|ZP_03990685.1| possible alanine--tRNA ligase [Oribacterium sinus F0268]
 gi|227841837|gb|EEJ52112.1| possible alanine--tRNA ligase [Oribacterium sinus F0268]
          Length = 359

 Score =  433 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 151/323 (46%), Positives = 211/323 (65%), Gaps = 10/323 (3%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    V+ +R  FL +FQ+  H ++ S SL+P ND +L+  NSGM P K  FTGQE P  
Sbjct: 36  MKKYGVNELRKMFLAYFQEKEHLVMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPK 95

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V T QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  A+  AW+ LT+  
Sbjct: 96  RRVATCQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKSEALHFAWEFLTERV 151

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L++ RLY ++Y EDEEAFK+W +  G+ AD+I R    DNFW     GPCGPCSEI++D
Sbjct: 152 GLEKDRLYPSIYLEDEEAFKVWNEEIGIPADRIYRFGKKDNFWEHG-VGPCGPCSEIYYD 210

Query: 179 QGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           +GE    G       EG+R++E+WN+VF QF    K     L + +IDTGMGLER+A V 
Sbjct: 211 RGEKYGTGPEDVMGGEGDRFLEVWNVVFSQFNNDGKGNYTDLIQKNIDTGMGLERLAVVC 270

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+  + +D+D  + ++   E ++G KY  +    V+ R+I DH++S +F+ +DGI+P+NE
Sbjct: 271 QDVPSLFDVDTNQAMMTEIESLSGKKYLEDKTADVSFRIIADHVKSCTFMASDGIMPSNE 330

Query: 296 GRGYVLRRIMRRAMCYARLLGYT 318
           GRGYV RR++RRA  + R+LG  
Sbjct: 331 GRGYVFRRLLRRAARHGRILGIQ 353


>gi|256370739|ref|YP_003108564.1| putative alanyl-tRNA synthetase fragment [Candidatus Sulcia
           muelleri SMDSEM]
 gi|256009531|gb|ACU52891.1| putative alanyl-tRNA synthetase fragment [Candidatus Sulcia
           muelleri SMDSEM]
          Length = 449

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 162/450 (36%), Positives = 251/450 (55%), Gaps = 22/450 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I+  FL+FF+K  H+++ S+SL+  +DP+LMFTN+GM  FK  F G + P Y  +
Sbjct: 1   MKYKDIKKIFLDFFKKKNHQIIDSASLLAKDDPSLMFTNAGMNRFKKYFLGSKNPKYVRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T +QKC+R  GKHND+ +VGR   HHT FEMLGN+SFG YFK+ AI+ AW+LLTK F + 
Sbjct: 61  TNIQKCLRITGKHNDISDVGRDKYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTKTFKIR 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  +Y+T++          D+E++K WK +  ++ ++I+      NFW M  TGPCG  S
Sbjct: 121 KSNIYVTIFSGNINENLEFDKESYKYWKNL--INENQIVFFDKKHNFWEMGNTGPCGYSS 178

Query: 174 EIFFDQGECIPGGLPG----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D  E             ++     IE+WNLVF++F +        L K  +DTGMG
Sbjct: 179 EIHIDLREKKEKKKIEGKKLINKGHPLVIELWNLVFIEFFRTQNGNLEKLSKSHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIA 287
           +ER+  VLQ K + YD D+F  LI+  E +TG  Y       +  RV+ DH+R+  F I 
Sbjct: 239 IERLCMVLQNKKSTYDTDIFISLIKEIENITGKVYGKLEEEDIAIRVLADHIRAIVFAIK 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DGI+P+N   GY++R+++RR + Y  L L   +  +  L+  + +E  +   ++ +    
Sbjct: 299 DGIIPSNNKSGYIIRKLLRRTIVYYFLYLNIKKSFLYKLVKVVLSEKKNENSKIKEN--F 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I   ++ E+  F K L +       ++S L K+   I+NG + F+LYDT+GLP ++    
Sbjct: 357 ISNLIKKEELLFFKNLFKVSKKFYKIISSLKKEGKTIINGKIIFELYDTYGLPFELANLF 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSL 434
                   ID  SF + + +Q+ R++    
Sbjct: 417 ALKNNFI-IDKFSFEKEMLKQKLRSKTKKK 445


>gi|55379213|ref|YP_137063.1| alanyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|59798483|sp|Q5UZE6|SYA_HALMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|55231938|gb|AAV47357.1| alanyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 927

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 203/965 (21%), Positives = 366/965 (37%), Gaps = 206/965 (21%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           +++ +R  FL FF+   HE +    +        ++ T + +  F+ + T G   P    
Sbjct: 60  SLTEMREAFLSFFEDRDHERIDPYPVAANRWRDDVLLTQASIYDFQPLVTSGTTPPPANP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG----------------YFKE 104
           +   Q C+R      D+DNVG+T RH   FEM+ + +F                  Y+K 
Sbjct: 120 LCISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNAREDIEDPEQYAYEGEVYWKN 175

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
             +Q   +L                            +  G + D+I+ I   ++ W   
Sbjct: 176 ETVQYCDELF---------------------------EEMGANLDEIVYI---EDPWVGG 205

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------- 217
             G  GP  E+ +                  R  E+  LVFM  EQ +  E         
Sbjct: 206 --GNAGPAIEVIY------------------RGAELATLVFMSMEQDSDGEYEMKDGNRY 245

Query: 218 -ILPKMSIDTGMGLERMATVLQEKTNNYD------------------IDLFKHLIQASEQ 258
             +    +DTG GLER   + Q     Y+                   D  + ++  + +
Sbjct: 246 SPMDTYIVDTGYGLERWTWMSQGTPTVYEAVYPDMIAFLKDNAGIELTDEEERIVHEAAK 305

Query: 259 VT---------------------------GMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           +                             M+     + +   I DH R+ ++++ DGI+
Sbjct: 306 LAGRMDIDEAEDIEAERDTIAAEVGVEVEEMRDLMAPLEDIYAIADHCRTLAYMLGDGIV 365

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI--QAKLLIEE 349
           P+N G GY+ R ++RR       +G   PL          E+     E +  + +  I +
Sbjct: 366 PSNVGTGYLARMVLRRTKRLVDGVGVDAPL---------DELVDMQAERLDYENRDTIRD 416

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            +R+E E++ +TLDRG   +  +      K E +      +LYD+HG+  D++++I   +
Sbjct: 417 IVRTEVEKYRETLDRGGRRVRQLADEYAEKGEPIPTSELVELYDSHGIQPDMVEEIAAEK 476

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+A      F   + ++            +  ++  +    E+   T  + Y+  + ++F
Sbjct: 477 GVAVDVPDDFYAVVAQRH-----GGDDTATEESQTPYEDRLEELPETDRLYYEDQQRTEF 531

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                ++V  +  + E           +VV DQT FY E GGQ 
Sbjct: 532 --------------------EAVVLEVFDRDE--------DTYDVVLDQTMFYPEGGGQP 563

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    D +  ++TDVQ+  + I                 +   +D   R++L  +H+
Sbjct: 564 PDKGTLSTDDVSAEVTDVQQYGDVIVHT----CDDDPGKGEFVRGQVDATRRQRLMQHHT 619

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH++ H+   +LG HV Q G+    D  R D+ H + ++  ++K IE   NDII  N+ 
Sbjct: 620 ATHIVIHSARQVLGEHVRQAGAQKGTDSARIDIRHYESVSREKVKEIERLANDIIQDNIT 679

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V     +R DA       L         ++  +   D        CGGTHV+ TG+I  +
Sbjct: 680 VSQEWPDRNDAEERYGFDLYQGGIPAGEQIRLITVGDD----VQACGGTHVARTGDIGAV 735

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            +++   I+ G+ R+    G  A       ++ L   A  L V+   V    E  ++E++
Sbjct: 736 KLLNTERIQDGVIRLTFAAGNAAIEATQRTEDALTEAADILDVAPDAVPETAERFFDEWK 795

Query: 769 KLQLIHAKRKLQLNVEDLSC---HKIADVNFMSHIIS--EVDSKELKSVMDALQKKIQSG 823
                  + K QL     S    ++   V   + ++   + D  EL++  +A+ ++   G
Sbjct: 796 ARGKEIEQLKEQLAEARASGGGDNEEVGVGDATAVVGRIDADMDELRAQANAIVEQ---G 852

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMA 875
            I ++G   +  A  ++ V + +    +A ++    A         GR        P  A
Sbjct: 853 NIAVLGSGLDG-AQFVVSVPDGV--DVDAGEVVGELA---------GRVGGGGGGPPDFA 900

Query: 876 QSGGP 880
           Q GGP
Sbjct: 901 QGGGP 905


>gi|126179459|ref|YP_001047424.1| alanyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|189082113|sp|A3CVP2|SYA_METMJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|125862253|gb|ABN57442.1| alanyl-tRNA synthetase [Methanoculleus marisnigri JR1]
          Length = 915

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 210/963 (21%), Positives = 366/963 (38%), Gaps = 177/963 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           NVS +R  FL FF+++GH  L    +       +  T + +  F+   T G   P    +
Sbjct: 58  NVSEMREAFLSFFERHGHTRLERYPVAARWRDDIYLTIASIADFQPFVTSGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+K++ + L  + +  
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTLFEMMAHHAFNTPEEQIYWKDQTVALCDEFI-- 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                    K  G    ++   +  ++ W     G  G   E+ 
Sbjct: 172 -------------------------KSIGGDPARV---SYKEHPWYGG--GNAGASVEVL 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK---------MSIDTG 227
                                +E+  LVFM   +Q   +  +              +DTG
Sbjct: 202 I------------------GGLEVATLVFMNLGRQKTDQPPVDVNGVPYYPMRLNIVDTG 243

Query: 228 MGLERMATVLQEKTNNYDI----------------DLF------KHLIQASEQVTGMKYE 265
            GLER+    +     YD                 DL       K +  ++     M   
Sbjct: 244 YGLERLVWASKGSPTIYDAVFPEMVSRLMRSARLEDLLDNPEFTKIMGLSARFAGVMDIS 303

Query: 266 GNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYV 300
           G N+ N R                          I DH R  ++++ D I+P+N   GY+
Sbjct: 304 GTNLYNLRRKVAEAIDVPVERLERIVVPIEKVYSIADHTRCLAYMLGDCIVPSNVREGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR +     L   + L   L+ A    +G+   E  Q    + E + +E+ R+  
Sbjct: 364 ARLVLRRTLRMMNDLSMDDALT-DLIEAQMQVVGAENFE--QDVDAVREIVENEEARYAS 420

Query: 361 TLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           TL+RG  ++  +  +   K   +  +    LYD+HG+P ++++++  A G       +F 
Sbjct: 421 TLERGARIVQKIARNYRAKSSRVPLEEVITLYDSHGIPPEMVKEVAAAEGAVVEIPDNFY 480

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + E  S A+  + G         +         T+ + Y+L    +F           
Sbjct: 481 SLIAETHSEAQKEARGEDPL---DAYRERAVSLPPTKKLYYELPNEVEF----------- 526

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     ++V                     V DQT FY E GGQ  DTG  +    
Sbjct: 527 ---------EAMVLDYFD-------------GMAVLDQTLFYPEGGGQPSDTGTLVTSES 564

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ +V K  E I      V  G L     +   +D + R  L  +H+ATH+L HA   
Sbjct: 565 MVRVEEVVKLGEVILHR---VTGGPLMRGDRVKGMVDEERRWSLMRHHTATHVLLHAAQQ 621

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q G+    +  R D+ H + IT  EL+ IE   N ++  + PV   +  R  A
Sbjct: 622 VLGVHVHQAGAQKGSEVSRLDIRHYRHITPDELRRIELEANRLVMADTPVYIHVEERTKA 681

Query: 660 IASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L          +R V V            C GTHV +TGEI  + ++    I+
Sbjct: 682 EQKYGFGLYQGGVPPGREIRTVQVGA------DVQACAGTHVRTTGEIGPIRVLGVEHIQ 735

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G+ R+    G  A   +    + L+  A  + V   N+   V   + E+++ +    + 
Sbjct: 736 DGVERLVFAAGIAAVHAVQHLGDLLQESADMVSVQPENLPATVARFFSEWKEQKKEIERL 795

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKK 835
           + ++   ++       V+ +  ++  +D+  KEL ++   +  +   G+ +        K
Sbjct: 796 QKKVVDLEMQNLDGEVVDGVRVVVRTLDATHKELVALATTVADE--GGVALFASSDGTVK 853

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
                          NAVD+ R    +LGG G GG+P++AQ  GP+ ++ ++A+    + 
Sbjct: 854 VVATSGAP-----TVNAVDIVREVCGILGGKG-GGKPNLAQGAGPDASRLEEALEYGRNR 907

Query: 896 LKK 898
           + +
Sbjct: 908 IIE 910


>gi|284163328|ref|YP_003401607.1| alanyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284012983|gb|ADB58934.1| alanyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 925

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 224/965 (23%), Positives = 380/965 (39%), Gaps = 173/965 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           +++ +R  FL +F+ N HE +    +        ++ T + +  F+ + T G+  P    
Sbjct: 61  SLTEMREVFLSYFEDNDHERIEPYPVAANRWRDDVLLTQASIYDFQPLVTSGETPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F        I             
Sbjct: 121 LTVSQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNT---REDIPE----------- 162

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+   +  VY +D         +  L AD I  +T  ++ W     G  GP  E+ +   
Sbjct: 163 DKYAYHGEVYWKDRTVELCDGLLQELGAD-ISEVTYIEDPWVGG--GNAGPAIEVIY--- 216

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--------LPKMSIDTGMGLER 232
                          R +EI  LVFM  EQ  + E  +        +    +DTG GLER
Sbjct: 217 ---------------RGLEIATLVFMCMEQDPEGEYELKDGNRYSYMDTYIVDTGYGLER 261

Query: 233 MATVLQEKTNNYD------------------IDLFKHLIQASEQV--------------- 259
              + Q     Y+                   D    ++  + ++               
Sbjct: 262 WTWMSQGTATVYEAIYPEMIDFLKDNAGLSYTDEETEIVSRAARLSGQLDIDDVDDVEAA 321

Query: 260 ------------TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
                         ++     + +   I DH R+ ++++ DGI+P+N G GY+ R ++RR
Sbjct: 322 RGEIAAEIGVSVDELRDLVEPLEDIYAIADHCRTLAYMLGDGIVPSNVGTGYLARMVLRR 381

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
                   G   PL          +M +   E  + +  I + +R+E E++ +TL+RG  
Sbjct: 382 TKRLCDNAGVDAPL------DELVDMQAQRLEY-ENRDTIRDIVRTEVEKYRETLERGGR 434

Query: 368 LLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            ++ +      K E +  +   +LYD+HG+  D++++I    G        F   +    
Sbjct: 435 RVETLAEEYAKKGEPIPIEELIELYDSHGIQPDMVEEIAEEAGAEIDVPDDFYSLV---- 490

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
             A+ H         ++      E    T+ + YD  + ++F                  
Sbjct: 491 --AQRHDTPEAVEAADEDEEDRFEDLPETEKLYYDDQQRTQF------------------ 530

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
              ++V  + ++ E           +VV DQT FY E GGQ  DTG    D    ++TDV
Sbjct: 531 --EAVVLDVFEREE---------GYDVVLDQTMFYPEGGGQPADTGTLSTDDTAAEVTDV 579

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q   +G+ +H A    G       +   ID   RRQL  +H+ATH++ HA   +LG H+ 
Sbjct: 580 Q-IEDGVILHRADENPG---KGEFVNGQIDGGRRRQLMRHHTATHIVIHAARQVLGEHIR 635

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q G+    D  R DV H   I+ A++K IE   N+++  N  V     +R DA A     
Sbjct: 636 QAGAQKGVDSSRIDVRHYDRISRADVKEIESLANELVMDNTQVSQDWPDRHDAEAEHGFD 695

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           L         ++  ++  D        CGGTHV+ TG+I  + I++   ++ G+ RI   
Sbjct: 696 LYQGGIPPGEQIRLIQVADD----IQACGGTHVARTGDIGSIKILNTERVQDGVERITFA 751

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            G+ A      +++ L   A  L VS  +V    E  +EE++           QL     
Sbjct: 752 AGEAAIESTQVKEDALYEAAEILDVSPEDVPETAERFFEEWKARGKEIEDLTEQLAAARA 811

Query: 787 ---SCHKIADVNFMSHIIS--EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                 +  DV   + ++   + D  EL++  +AL   ++ G I ++G  +   A  ++ 
Sbjct: 812 GGGGGGEEVDVGDRTAVVDRIDADMDELRATANAL---VEEGKIAVLGSGQSG-AQFVVA 867

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGGPNGNKADQAIAGVA 893
           V +D     NA ++    A         GR        P  AQ GGPN    D A+    
Sbjct: 868 VPDD--SDVNAGEVVGELA---------GRVGGGGGGPPDFAQGGGPNVEDLDAALEDAP 916

Query: 894 SFLKK 898
             L++
Sbjct: 917 DVLRQ 921


>gi|148642679|ref|YP_001273192.1| alanyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|205830145|sp|A5UKU6|SYA_METS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148551696|gb|ABQ86824.1| alanyl-tRNA synthetase, AlaS [Methanobrevibacter smithii ATCC
           35061]
          Length = 897

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 210/953 (22%), Positives = 369/953 (38%), Gaps = 166/953 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
            +  I+  F EF +K GH  +    ++       +    + +  F+   T G  KP    
Sbjct: 52  TLYEIQQVFREFLEKEGHTPIKRYPILAKRWRDDVFLVGASIFCFQPWVTSGMVKPPANP 111

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q  VR     ND+DNVGRT RH T F M  +          Y+++  I+L  +   
Sbjct: 112 LEIEQPSVRL----NDVDNVGRTGRHMTCFTMGSHTVINTEENFIYWEDETIRLCHEFF- 166

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     K  G++ ++I  I    ++WS    G  GPC E+
Sbjct: 167 --------------------------KYIGINTEEICFI---KSWWSGG--GNEGPCYEV 195

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                               R +E+  LVF+Q++  +  E+  +P   +DTG GLER+A 
Sbjct: 196 ------------------CVRGVELATLVFIQYKTLDNGEKEEIPIKVVDTGYGLERIAW 237

Query: 236 VLQEKTNNYD------IDLFKHL------------------IQASEQVTGMKYEGNN--- 268
           + Q     YD      +D  K L                  +   E +  +K        
Sbjct: 238 ISQGTPTAYDACFAPVVDKLKELTDVKVNTDILARNAQIAGMMDIEDIGDIKELRQQVAN 297

Query: 269 ---------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                          +    +I DH R  +F++ADGI+P+N   GY+ R ++RR + + +
Sbjct: 298 SLGITLDELLESAEPMEAIYIIADHTRCLAFMLADGIIPSNVKEGYLARLVLRRTIRFMK 357

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
            L   E L   ++      +   YPE+  ++  I   +  E+ER+  T+ +G  ++   +
Sbjct: 358 ELNMKESL-AEVMGIQLEFLTKFYPEIKDSEDHIMNIISLEEERYQSTIKKGTSIVKRSI 416

Query: 374 SHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
             L K+    +  D+   LYD HG+P + + +I            +F   +     +  +
Sbjct: 417 KRLKKEGKTEMPLDMLMDLYDAHGIPPETVVEIAGD-NFTVNVPDNFFTLVAGAHEKDTS 475

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           +              S +  Y  T  + Y      +F                     + 
Sbjct: 476 NKKE-----------SFEIDYPETDLLFYKDFNQKEF--------------------EAE 504

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  +V             K  +VFD+T FY E GGQ  D G    DG  + I   +K   
Sbjct: 505 VLGVV---------EKDGKNTLVFDKTVFYPEGGGQPSDVGTISVDGAVVNINYAEKVNN 555

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            +  H              +   ID+  R  L+ +HSATHL+  A   ILG H+ Q G+ 
Sbjct: 556 VVLHHVDGDVDLDNFVGKKVEGKIDWNRRITLARHHSATHLIVAAARKILGEHIWQAGAQ 615

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
                 R D++H K I+  EL  IE   N+ +  N+ +  +   R++A +     L    
Sbjct: 616 KGVSRSRIDLSHYKRISQEELNEIEKLANEYVMDNIELDIKFYTRDEAESLYGFKLYQGG 675

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +   D        C GTHV  TG+I  + I     ++ G+ RI+   G 
Sbjct: 676 IVPGKSIRVVKIPGID-----VQACAGTHVLRTGDIGPIKINKTERVQDGVERIDFSAGT 730

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK-----LQLNVE 784
            A   +  +++ L+  +   KV    +    +  + E++  +    K K     L++N  
Sbjct: 731 AAVDSIQNENKLLRESSGIFKVDDDQLPKTCDRFFSEWKAQKNEIDKLKSEIASLKMNSL 790

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                +I  +  +  +I + D KEL+ +        ++ ++++   + + K  ++   ++
Sbjct: 791 ADDVTEINGLKVVKQLI-DADFKELQKIATDFTDNDKADVVLMG--NNDGK--IVGAASQ 845

Query: 845 DLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + +D      ++ + +A VLGGGG GGR  +AQ  GP     ++A+      +
Sbjct: 846 NAIDAGIKVNEIIKKAAGVLGGGG-GGRLTLAQGAGPKCENMNEALNIAIDLI 897


>gi|77405530|ref|ZP_00782621.1| alanyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77175837|gb|EAO78615.1| alanyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 658

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 228/692 (32%), Positives = 359/692 (51%), Gaps = 48/692 (6%)

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHR 273
           E   LP  +IDTG GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +
Sbjct: 5   EYKELPNKNIDTGAGLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFK 64

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM 333
           VI DH+R+ SF I DG LP NEGRGYVLRR++RRA+ + R LG  E  +   +P +   M
Sbjct: 65  VIADHIRALSFAIGDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKXVPTVGQIM 124

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLY 391
            S YPE+++ +  IE+ ++ E+E F +T+D G   LD +L+ L  +  + L G   FKLY
Sbjct: 125 ESYYPEVLEKRDFIEKIVKREEETFARTIDAGSGHLDSLLTQLKAEGKDTLEGKDIFKLY 184

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G P+++ +++    G   ID   F  A++EQ+ RARA  +  GS   +    +L   
Sbjct: 185 DTYGFPVELTEELAEDAGYK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGI 241

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
              ++F                            + + S +  I+   E  E    GQ  
Sbjct: 242 VEESRF------------------------DYGADSLESNLSVIIADNERTEAVSEGQ-A 276

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VF QTPFYAE GGQ+ D G    D    +      +KA      H +     L    +
Sbjct: 277 LLVFAQTPFYAEMGGQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTN 336

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
             L I+ + R  +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ 
Sbjct: 337 YTLEINKERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNE 396

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           EL+ IE  VN+ I  +L + T   + E A   GA AL G KY   VRVV +     G +S
Sbjct: 397 ELRHIEQEVNEQIWNDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYS 451

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTH++++ EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K
Sbjct: 452 VELCGGTHLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVK 511

Query: 751 VSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV 804
             Q  +   +V+ + +  R LQ  + + K +              +   V F++  +   
Sbjct: 512 APQLKDAAAKVQALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVA 571

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           D+  L++  D  ++K  S +++LV    EK   ++   T+D     +A ++ +  A ++ 
Sbjct: 572 DAGALRTFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA 627

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G GGG+P MA +GG + +K  + +A VA  L
Sbjct: 628 -GRGGGKPDMAMAGGSDASKIAELLAAVAENL 658


>gi|288559749|ref|YP_003423235.1| alanyl-tRNA synthetase AlaS [Methanobrevibacter ruminantium M1]
 gi|288542459|gb|ADC46343.1| alanyl-tRNA synthetase AlaS [Methanobrevibacter ruminantium M1]
          Length = 910

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 200/962 (20%), Positives = 368/962 (38%), Gaps = 177/962 (18%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTV 64
           I+ TF  F +K GHE +    ++       +    + +  F+   T G  +P    +   
Sbjct: 56  IQETFRTFLEKEGHEPISRYPILAKRWRDDVFLVGASIFCFQPWVTSGLVEPPANPLEVE 115

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
           Q  +R     ND+DNVGRT RH T F M  +          Y+++  I+L  +       
Sbjct: 116 QPSIRL----NDVDNVGRTGRHMTCFTMGSHTVINKPDNFIYWEDETIRLCHEFF----- 166

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
                                 K  G++ +    +T   ++W     G  GPC E+    
Sbjct: 167 ----------------------KSIGINTE---ELTFIKSWWKGG--GNEGPCYEV---- 195

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                           R +E+  LVFMQ++     ++  +P   +DTG GLER+A + Q 
Sbjct: 196 --------------CCRGVELATLVFMQYKTLENGDKEEIPIKVVDTGYGLERIAWISQG 241

Query: 240 KTNNYD------IDLFKHL------------------IQASEQVTGMKYEGNN------- 268
               YD      +D  K +                  +   E +  ++            
Sbjct: 242 TPTAYDACFAPVVDKLKEITNVSVNEEILARNAEIAGMMDIEDIGDIRDLRQQVADSLNI 301

Query: 269 -----------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                      +    +I DH R  +F++ADGI+P+N   GY+ R ++RR + + + L  
Sbjct: 302 SLEEYLENAEPMEAIYIIADHTRCLAFMLADGIIPSNVKEGYLARLVLRRTIRFMKELEM 361

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E L   ++      +   YPE+ +++  I   +  E+ER+ KT+++G   +   +  L 
Sbjct: 362 EESLS-DIMAIQLDFLREFYPEIAESQEHIMNIINLEEERYAKTIEKGKKTVKRTIKRLK 420

Query: 378 KDEI--LNGDVAFKLYDTHGLPLDIMQDILC-ARGLAGIDIISFNQALEEQRSRARAHSL 434
           K+    +  +    LYD  G+P + ++++    +        +F   + +          
Sbjct: 421 KEGKTSMPLETLIDLYDAQGMPPETVEELASGDKDFEVFVPDNFFTIVADMHEE------ 474

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
                  +K  F L      T+   Y  +   +                           
Sbjct: 475 ---DKVAKKETFEL--DVPETELDFYKDIYQKES-------------------------- 503

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
               G I+E       + ++ D+T FY E GGQ  D G  I     +      +K +G+ 
Sbjct: 504 ---DGTIIEVVEKDGNLNIILDRTIFYPEGGGQPSDIGI-ISIEGTIYEVVYAEKLDGVV 559

Query: 555 VHHAIVERGIL----------RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           +H    +                   + + I++  R  L+ +H+ THL+  A   ILG H
Sbjct: 560 LHRIATKEDEDVASLVEDLRKYIGTEVHMAINWNRRITLARHHTGTHLVIAAARKILGQH 619

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           + Q G+       R D+ H K IT  EL  IE   N+ +  N+ +    ++R+DA     
Sbjct: 620 IWQAGAQKGLARSRIDLAHYKRITIGELDEIEKLANEYVMMNIDLDINWLSRDDAEKKYG 679

Query: 665 AALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             L         ++RVV +   D        C GTH+S TGE+  + I     ++ G+ R
Sbjct: 680 LILYQGGVVPGSQIRVVKIPGID-----VQACAGTHLSRTGEVGPIKINKTERVQDGVER 734

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           I+   G  A   +      +K  +    V+   +    E  + E++  +   A+ + ++ 
Sbjct: 735 IDFSAGLAAIDSIQNDKAIIKESSDVFSVTNDQLPKTCERFFNEWKAQKNEIARLQKEIA 794

Query: 783 VEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
              +S       ++  +  +  I+ + + KEL+ +        +  ++ +   + E K  
Sbjct: 795 NLKVSTLAENAFEVNGLKVLKEIL-DANIKELQKIATDFTDNDKVDLVFIG--NNEGK-- 849

Query: 838 VLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++   +++ +D      ++ + +A +LGGGG GGRP +AQ  GPN +K   A+      L
Sbjct: 850 IVGSASKNAIDSGVQVNNIIKEAASLLGGGG-GGRPTLAQGAGPNADKMADALDLAVELL 908

Query: 897 KK 898
            K
Sbjct: 909 NK 910


>gi|315187025|gb|EFU20782.1| alanyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 603

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 158/472 (33%), Positives = 262/472 (55%), Gaps = 22/472 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  ++ FF+++GH  +   SLIP NDPT++FT +GM P      G E P  + +
Sbjct: 1   MTGKELREKYIRFFREHGHAEISGFSLIPENDPTVLFTTAGMHPLVPYILGAEHPAGKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              Q+C+R G    D+D VG    H TFFEMLGN+S G YFKE AI+++++ LT  +   
Sbjct: 61  VDYQRCIRTG----DIDAVG-DASHLTFFEMLGNWSLGDYFKEEAIRMSYEFLTSPRWLG 115

Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           +D  RL +TV+        DEE+ ++W+ + G+  ++I  ++   N+W    +TGPCGP 
Sbjct: 116 IDPGRLSVTVFAGDEMVPRDEESAEIWRSL-GIPEERIHFMSREHNWWGPAGKTGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +E+F D G+   G          +Y EIWN VFM++ ++       L +  +DTGMGLER
Sbjct: 175 TEMFIDTGKPPCGPDCKPGCSCGKYFEIWNDVFMEYNKKADGTYEPLSRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD-- 288
              +LQ K + YD + F  +I+A E+ TG  Y  +    V+ R+I DH+++++F++ D  
Sbjct: 235 TTAILQGKQSVYDTEFFVPIIRAIEESTGAVYGRDPEKDVSIRIISDHIKAATFILGDER 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N G+GYVLRR++RRA+ +AR LG     +      +       YP L + +  + 
Sbjct: 295 GVTPSNVGQGYVLRRLIRRAIRHARKLGVEGNFVHLPAQVVLDMYKEYYPLLAEKRDFVL 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E LR E+++F KTL +G    + +L +L     +++ G +AF+LYDT+G P+++ +++  
Sbjct: 355 EELRVEEDKFLKTLQKGEHEFEKMLPNLLKNPKKVIPGRIAFRLYDTYGFPIEVTEELAR 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
             GL  +D   F++  E  R R++  +  +  G          + + AT  +
Sbjct: 415 EHGLT-VDRAGFDEEFERHRERSKQGADRVFKGGLADHTEETTKLHTATHLL 465



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 5/156 (3%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +       +  + +  H+ATHLLH AL  +LG HV Q GS ITP+ LRFD +H   +T  
Sbjct: 443 VFKGGLADHTEETTKLHTATHLLHQALRIVLGPHVQQKGSNITPERLRFDFSHPDKLTPE 502

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +++ +E+ VN  I ++LPV   +M  E+A   GA A    +Y+++V+V SV     G  S
Sbjct: 503 QIRKVEEIVNQKIKEDLPVTMEVMTLEEAKEKGAIAFFTDRYDEKVKVYSV-----GDFS 557

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             +CGG HV  TG +    IV E S  AG+RRI A+
Sbjct: 558 KEVCGGPHVERTGVLGRFKIVKEQSSSAGVRRIRAV 593


>gi|222445824|ref|ZP_03608339.1| hypothetical protein METSMIALI_01468 [Methanobrevibacter smithii
           DSM 2375]
 gi|288869576|ref|ZP_05975048.2| alanine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|222435389|gb|EEE42554.1| hypothetical protein METSMIALI_01468 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861589|gb|EFC93887.1| alanine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 897

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 210/953 (22%), Positives = 369/953 (38%), Gaps = 166/953 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
            +  I+  F EF +K GH  +    ++       +    + +  F+   T G  KP    
Sbjct: 52  TLYEIQQVFREFLEKEGHTPIKRYPILAKRWRDDVFLVGASIFCFQPWVTSGMVKPPANP 111

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q  VR     ND+DNVGRT RH T F M  +          Y+++  I+L  +   
Sbjct: 112 LEIEQPSVRL----NDVDNVGRTGRHMTCFTMGSHTVINTEENFIYWEDETIRLCHEFF- 166

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     K  G++ ++I  I    ++WS    G  GPC E+
Sbjct: 167 --------------------------KYIGINTEEICFI---KSWWSGG--GNEGPCYEV 195

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                               R +E+  LVF+Q++  +  E+  +P   +DTG GLER+A 
Sbjct: 196 ------------------CVRGVELATLVFIQYKTLDNGEKEEIPIKVVDTGYGLERIAW 237

Query: 236 VLQEKTNNYD------IDLFKHL------------------IQASEQVTGMKYEGNN--- 268
           + Q     YD      +D  K L                  +   E +  +K        
Sbjct: 238 ISQGTPTAYDACFAPVVDKLKELTDVKVNTDILARNAQIAGMMDIEDIGDIKELRQQVAN 297

Query: 269 ---------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                          +    +I DH R  +F++ADGI+P+N   GY+ R ++RR + + +
Sbjct: 298 SLGITLDELLESAEPMEAIYIIADHTRCLAFMLADGIIPSNVKEGYLARLVLRRTIRFMK 357

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
            L   E L   ++      +   YPE+  ++  I   +  E+ER+  T+ +G  ++   +
Sbjct: 358 ELNMKESL-AEVMGIQLEFLTKFYPEIKDSEDHIMNIISLEEERYQSTIKKGTSIVKRSI 416

Query: 374 SHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
             L K+    +  D+   LYD HG+P + + +I            +F   +     +  +
Sbjct: 417 KRLKKEGKTEMPLDMLMDLYDAHGIPPETVVEIAGD-NFTVNVPDNFFTLVAGAHEKDTS 475

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           +              S +  Y  T  + Y      +F                     + 
Sbjct: 476 NKKE-----------SFEIDYPETDLLFYKDFNQKEF--------------------EAE 504

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  +V             K  +VFD+T FY E GGQ  D G    DG  + I   +K   
Sbjct: 505 VLGVV---------EKDGKNTLVFDKTVFYPEGGGQPSDVGAISVDGTVVNINYAEKVNN 555

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            +  H              +   ID+  R  L+ +HSATHL+  A   ILG H+ Q G+ 
Sbjct: 556 VVLHHVDGDVDLDNFVGKKVEGKIDWNRRITLARHHSATHLIVAAARKILGEHIWQAGAQ 615

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
                 R D++H K I+  EL  IE   N+ +  N+ +  +   R++A +     L    
Sbjct: 616 KGVSRSRIDLSHYKRISQEELNEIEKLANEYVMDNIELDIKFYTRDEAESLYGFKLYQGG 675

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +   D        C GTHV  TG+I  + I     ++ G+ RI+   G 
Sbjct: 676 IVPGKSIRVVKIPGID-----VQACAGTHVLRTGDIGPIKINKTERVQDGVERIDFSAGT 730

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK-----LQLNVE 784
            A   +  +++ L+  +   KV    +    +  + E++  +    K K     L++N  
Sbjct: 731 AAVDSIQNENKLLRESSGIFKVDDDQLPKTCDRFFSEWKAQKNEIDKLKSEIASLKMNSL 790

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                +I  +  +  +I + D KEL+ +        ++ ++++   + + K  ++   ++
Sbjct: 791 ADDVTEINGLKVVKQLI-DADFKELQKIATDFTDNDKADVVLMG--NNDGK--IVGAASQ 845

Query: 845 DLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + +D      ++ + +A VLGGGG GGR  +AQ  GP     ++A+      +
Sbjct: 846 NAIDAGIKVNEIIKKAAGVLGGGG-GGRLTLAQGAGPKCENMNEALNIAIDLI 897


>gi|227538395|ref|ZP_03968444.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241777|gb|EEI91792.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 291

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 119/269 (44%), Positives = 164/269 (60%), Gaps = 14/269 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL FF+   H+++PS+ ++  NDPTLMFTN+GM  FK+ F G+ +P +  +
Sbjct: 23  MTNREIREAFLNFFKSKNHQIVPSAPVVVKNDPTLMFTNAGMNQFKDFFLGEAQPKHSRI 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+LLT+ + LD
Sbjct: 83  ADTQRCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKKEAIEWAWELLTEVYKLD 142

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T+++ D+        EA+  WK    +S D+I+     DNFW M ETGPCGPCS
Sbjct: 143 KDRLYVTIFEGDDSEGLVKDTEAYDFWKSW--ISEDRILLGNKKDNFWEMGETGPCGPCS 200

Query: 174 EIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI +D           G    + +  + IEIWNLVFMQF +        LP   +DTGMG
Sbjct: 201 EIHYDMRTEEERRTTPGQSLVNADHPQVIEIWNLVFMQFNRLKNGSLESLPAKHVDTGMG 260

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ 258
            ER+   +Q K++NYD D+F+ +I    Q
Sbjct: 261 FERLVRAIQGKSSNYDTDVFQPMITFIAQ 289


>gi|222479154|ref|YP_002565391.1| alanyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|254765170|sp|B9LUG4|SYA_HALLT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|222452056|gb|ACM56321.1| alanyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 926

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 212/947 (22%), Positives = 354/947 (37%), Gaps = 174/947 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++S +R  FL FF+++GHE +    +        ++ T + +  F+ + T GQ  P    
Sbjct: 61  SLSEMREAFLSFFEEHGHERIDPYPVAANRWRDDVLLTQASIYDFQPLVTSGQTPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F                 +E   
Sbjct: 121 LTISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNT--------------REEVAE 162

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+   +  VY +DE      K    L AD +  IT  ++ W     G  GP  E+ +   
Sbjct: 163 DEYAYHGEVYWKDETVEYCDKLFESLGAD-LEDITYIEDPWVGG--GNAGPAIEVIY--- 216

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--------LPKMSIDTGMGLER 232
                          +  E+  LVFM  E+    +  +        +    +DTG GLER
Sbjct: 217 ---------------KGAELATLVFMCMERDPDGDYEMKDGHTYSFMDTYIVDTGYGLER 261

Query: 233 MATVLQEKTNNYD------------------IDLFKHLIQASEQVTGMKYEGNNIV---- 270
              + Q     Y+                   +  + L+  + +++G     +       
Sbjct: 262 WTWMSQGTATVYEAVYPDAIDFLKENAGIEHTEAEQKLVHRAAKLSGRLDIDDVDDVEAA 321

Query: 271 -----------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
                                  +   I DH R+ +++  DGI+P+N G GY+ R ++RR
Sbjct: 322 RGEIADRLDVDVNRLRELVEPLESIYAIADHSRTLAYMFGDGIVPSNVGTGYLARMVLRR 381

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
                  +G   PL   L+      +G       + +  I E +R+E+ ++ KTL+RG  
Sbjct: 382 TKRLVDEIGIDAPL-DELVDMQAERLGY------ENRDTIREIVRTEERKYRKTLERGSR 434

Query: 368 LLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            ++ +     G DE +  +V  +LYD+HG+  D++ DI   RG        F   + ++ 
Sbjct: 435 KVESLADEYAGTDEPIPTEVLLELYDSHGIQPDMVADIAAERGATVDVPDDFYALVADRH 494

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
             A                    +    T+ + YD    ++F                  
Sbjct: 495 EEADGDEAAAERD-------DRFDDLPETEKLFYDDQGRTEF------------------ 529

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
              ++V  +        E   G   +VV DQT FY E GGQ  D G        + + DV
Sbjct: 530 --EAVVLDVF-------ELEEG--YDVVLDQTMFYPEGGGQPADRGQLTAGETTVDVVDV 578

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q++   +                 +   +D   R +L  +H+ATHL+ HA   +LG+HV 
Sbjct: 579 QERNGVVLHR----TDADPGKGEFVRGQVDGDRRDRLRAHHTATHLIGHAAREVLGNHVR 634

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q G+    D  R D+ H + IT  ++K IE   N ++  ++PV     +R +A +     
Sbjct: 635 QAGAQKGIDSSRLDIRHFERITREQVKEIERVANALVRDDVPVRQEWPDRNEAESEHGFD 694

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           L          +  +     G      C GTHV  TGEI  + ++    ++ G+ RI   
Sbjct: 695 LYQGGVPPGTNIRLIH---VGDEDVQACAGTHVERTGEIGAVKVLKTEPVQDGVERIVFA 751

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV--- 783
            G  A       ++ L   A  L V   +V    E  +EE++         K +L     
Sbjct: 752 AGGAAVEATQRTEDALYDAARALDVDPLDVPETAERFFEEWKGRGKEIESLKEELAAARA 811

Query: 784 ---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
               D    +I  V  +   +   D+ EL++  +A    +  G + +VG   +  AS   
Sbjct: 812 SGGADAEEVEIGGVTAVIQRLDG-DADELRATANA---HVDDGKVAVVGSGADGSASF-- 865

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGG 879
           VV        NA  +    A          R        P  AQ GG
Sbjct: 866 VVGVPDGVDVNAGQVVSELAA---------RVGGGGGGPPDFAQGGG 903


>gi|257052998|ref|YP_003130831.1| alanyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256691761|gb|ACV12098.1| alanyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 926

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 213/949 (22%), Positives = 361/949 (38%), Gaps = 187/949 (19%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAVTT 63
            +R  FL FF+++ HE +    +        ++ T + +  F+  + +G   P    +  
Sbjct: 64  EMREQFLSFFEEHDHERIDPYPVAANRWREDVLLTQASIYDFQPHVTSGASPPPANPLAV 123

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG------------YFKERAIQLAW 111
            Q C+R      D+DNVG T RH   FEM+G+ +F              Y+K+  ++   
Sbjct: 124 SQPCIRM----QDIDNVGVTGRHTMAFEMMGHHAFNADEGTDYAYEGEVYWKDECVEYCM 179

Query: 112 DLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           DLL +                D EA                 +T  ++ W     G  GP
Sbjct: 180 DLLAEV-------------GADREA-----------------VTLIEDPWVGG--GNAGP 207

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--------LPKMS 223
             E+ +                     E+  LVFMQFE+    +  +        + +  
Sbjct: 208 AFEVIY------------------EGAELATLVFMQFERDPDGDFEMKDGNTYSRMDRRV 249

Query: 224 IDTGMGLERMATVLQEKTNNYDI------------------------------------- 246
           IDTG GLER   + Q     Y+                                      
Sbjct: 250 IDTGYGLERWTWMSQGTPTVYEAVYPDMIDFLTDNAGIDHTADEEEIVHKAAKLSGRMDI 309

Query: 247 ----DLFKHLIQASEQVTGMKYEGNNI----VNHRVIVDHLRSSSFLIADGILPANEGRG 298
               D+       + ++         +     +   I DH R+ ++++ DGI+P+N G G
Sbjct: 310 DEAEDVEAARDDIAAEIGVATDRLRELVEPLESIYAIADHSRTLAYMLGDGIVPSNVGTG 369

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+ R ++RR       +G   PL   L+      +G    + I+      + +R+E E++
Sbjct: 370 YLARMVLRRTKRLVDEVGVDAPL-DELVDMQAERLGYDNRDTIR------DIVRTEVEKY 422

Query: 359 GKTLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            +TLDRG   ++ +        + +  D   +LYD+HG+  + ++ I   RG+A      
Sbjct: 423 RETLDRGHRRVEQLAEEYADSGDPIPADELVELYDSHGMQPETVEQIAADRGVAVETPED 482

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   + E+   A        S T E+           T+ + YD    ++F         
Sbjct: 483 FYSLVAERHEDAERAGSTEESDTDER-----LADLPETEKLYYDDQTRTEF--------- 528

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       ++V  +                +VV DQT FY E GGQ  D G    D
Sbjct: 529 -----------EAVVLDVF---------ERADGYDVVLDQTMFYPEGGGQPPDQGTLSTD 568

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +++TDVQ   +G+ +H    + G   T   +   +D + RR+L  +H+ATH++ HA 
Sbjct: 569 DETVEVTDVQ-IQDGVILHRTDADPG---TGDFVRGQVDGRRRRRLMAHHTATHIVVHAA 624

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG H+ Q G+    D  R DV H +P++ A +K IE   NDI+  N  V     +R 
Sbjct: 625 RQVLGDHIRQAGAQKGTDSARIDVRHYEPVSRAAVKEIERVANDIVTDNAQVTQEWPDRH 684

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A     L         ++  +  ED        CGGTHVS TGE+  + I S   I+
Sbjct: 685 EAEAEYGFDLYQGGIPAGEQIRLIHVEDD----VQACGGTHVSRTGEVGAIKIRSTERIQ 740

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G+ R+    G+ A       ++ L   A    V   +V    E  + E+++        
Sbjct: 741 DGVVRLTFAAGEAAIEATQATEDALYEAAEAFDVDPQDVPETAERFFAEWKERGKEIEAL 800

Query: 778 KLQLN------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           + +L         +     +     +   +   +  EL++  +A+     SG + +VG +
Sbjct: 801 RAELAEVRASGASEGEEVDLDGTTAVVQRVDG-EMDELRATANAIAD---SGSVAVVGSA 856

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP-HMAQSGG 879
            +  A  ++   E      +A  +    A  +GGGG  G P   AQ GG
Sbjct: 857 ADG-AQFVVAAPEG--SGVDAGSVVSELADRVGGGG--GGPSDFAQGGG 900


>gi|159042453|ref|YP_001541705.1| alanyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
 gi|205830009|sp|A8MBI2|SYA_CALMQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157921288|gb|ABW02715.1| alanyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
          Length = 899

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 204/950 (21%), Positives = 365/950 (38%), Gaps = 173/950 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  FL FF+K GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 63  SIKDVRERFLSFFEKRGHTRVARYPVVARWRNDVYLVGASIYDFQPWVTEGVVPPPANPL 122

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTK 116
           T  Q  +R      D+D VGR+ RH T FEM+ + +F       Y+    ++ A +  T+
Sbjct: 123 TISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNFPGKEIYWINETVEYAHEFFTR 178

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E               D+E                  +T  +N W     G  G   E+ 
Sbjct: 179 ELGF-----------RDDE------------------VTYKENIWEGG--GNAGESFEVL 207

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                              R +E+  LVFM + +    E   +P   +DTG GLER+  V
Sbjct: 208 V------------------RGLELATLVFMHY-RVIGDEYREMPIRIVDTGYGLERIYWV 248

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------------------- 268
           L  K   Y+  +F+  +  + Q+ G+                                  
Sbjct: 249 LTGKPTIYEA-VFEGFLNKARQLLGLPKPDEKVLASLAIHMGQLDPEVLALDKAYVEVAK 307

Query: 269 ---------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                               V+ DH R+ S++I DG++P+N G GY+ R ++RR + Y  
Sbjct: 308 RIGIDSSELINFIKPQEALYVLADHSRTVSWMINDGVIPSNSGVGYLARLLIRRMLKYMH 367

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           ++G   PL   +       + + YPEL ++  LI + +  E+ ++   + +   L+  + 
Sbjct: 368 VIGAQVPLT-EIFNTHLNYLINDYPELKESMQLILDLVDLEEAKYKSAISQLPKLISRIK 426

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
             L        +    LYD+HG+P ++++D    RG+      +F + L  +  +     
Sbjct: 427 GELTI------NDLINLYDSHGIPPEVVRDEAAKRGVKVNVPDNFYEMLAARHQKPAKGE 480

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
            G     T      L      T+ + Y+     +                      + V 
Sbjct: 481 EGNRLDVTADDVIDL----PPTRELFYEDTYAFE--------------------GKAKVL 516

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
            +++               +V D T FY E GGQ  D G    +G+  ++ DVQ+    I
Sbjct: 517 KVIKGK------------YIVLDSTIFYPEGGGQPADRGVLRFNGVEAKVVDVQRVGPVI 564

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
                    G       + + ID + R  L   H+ TH+L  ++  +LG HV Q G+   
Sbjct: 565 VHVIDGPTPG---VGDVVEMRIDSERRLGLMRMHTGTHILLQSIRRVLGKHVWQAGAQKD 621

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TK 671
               R DVTH +  T  E+K IE+  N+++  +LPV   +M R +A A     +      
Sbjct: 622 IPLSRLDVTHYRLPTPDEVKRIEELANEVVLSDLPVKAELMPRNEAEAKYGFIIYQGGVV 681

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               VR+V V   +   +    CGGTH+  T  I L+ IV    I+ G+ R    TG+ A
Sbjct: 682 PGGEVRIVKVGEGND-TYDVEACGGTHLDRTSRIGLIKIVKVDKIQEGVIRFIFTTGKYA 740

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDL-- 786
             ++   + KL S AS L+V +  V   V+ + +E    +    + A++ ++ ++ ++  
Sbjct: 741 LDYVRNLEGKLDSAASKLRVGRDEVDEAVDRLIKELNNAEERSRVLARKAIEADLANIVK 800

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           S   ++      +         ++  +  L  K    +++L+  ++       +      
Sbjct: 801 SMITVSGFKVAVYYEDYW----VRDYLQELASKYPGDVLVLIHGNE-----YQVYTN--- 848

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +  A+D+A++  ++ G GG  G    AQ    N  K D  +  +   L
Sbjct: 849 -GKVKAIDVAKVLNELGGKGG--GSGTFAQGVFNNPVKQDDVVNTIKRKL 895


>gi|156936991|ref|YP_001434787.1| alanyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
 gi|205830070|sp|A8A8X8|SYA_IGNH4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|156565975|gb|ABU81380.1| alanyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
          Length = 901

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 206/951 (21%), Positives = 377/951 (39%), Gaps = 171/951 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++   +  F++FF++ GH  +    ++      L  T + +V F+   T G   P    +
Sbjct: 56  SLRDAKREFIKFFEEKGHVPVEPRPVVARWRDDLFLTIASIVVFQPHVTKGLVPPPANPL 115

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             VQ C+R      D+DNVG T  RH T F M G+ +F       Y+KE  ++LA++  T
Sbjct: 116 VIVQPCIRLE----DIDNVGLTLGRHMTGFHMGGHHAFNYPDNWVYWKEETVKLAYEFFT 171

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +   + +  L                                +++W     G  GP  E+
Sbjct: 172 ERIGIPEELL-----------------------------NFKESWWEGG--GNAGPSFEV 200

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFILPKMSIDTGMGLER 232
                                 +E+  LVFMQ+   E+  +++   +    +DTG G+ER
Sbjct: 201 TV------------------AGLELATLVFMQYDVVEENGQKKYVPMKLKVVDTGYGIER 242

Query: 233 MATVLQEKTNNYDI---------------------------------------DLFKHLI 253
           +A   Q+    +                                          L +   
Sbjct: 243 IAWFTQKTPTAFHAVYGELLHEFHKRLGVEEPPDELLYELVRSAGLMDPERPETLERVYK 302

Query: 254 QASEQVTGMKYEGNNIVN----HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           +ASE++     E   I +       ++DH R+  +++ADGI+P+N G GY+ R ++RR +
Sbjct: 303 RASEKLGMRVDEIREIHSRASLVYQVLDHTRTLMWMLADGIVPSNVGEGYLARLVIRRTL 362

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
              + L    PL   LL          YP   + K  I + +  E ++F +TL +G  ++
Sbjct: 363 RALKKLKADVPLS-ELLELQINYWKDDYPRAWKNKDYILDVVEFEQKKFEETLKKGRNIV 421

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
             ++    +   +  D   +LYD+HG+P DI+ +I    G+      +F   +  +  + 
Sbjct: 422 IRLIKKKKQ---ITLDDLVELYDSHGIPPDIVSEIAKEMGVRVEVPHNFYSIVASRHQKT 478

Query: 430 RAHSLG-LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
                G    G          + +  T+ + ++     +F                    
Sbjct: 479 VHKVKGAEEKGKLPPEIIEWAKGFPPTRRLFHEDPYMKEF-------------------- 518

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
            + V    +               V+ D+T FY E GGQ  DTG         ++ DVQK
Sbjct: 519 DAQVIGSNRN-------------YVILDKTAFYPEGGGQAADTGVIASGDESYRVVDVQK 565

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
             + I         G       +V  ID++ R +L  +H+ THLL  AL  +LG HV Q 
Sbjct: 566 VGDVIVHVLDRDYSG----GKVVVGRIDWERRYRLMRHHTGTHLLLGALRKVLGDHVWQA 621

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+  TP+  RFD TH KP+T  E++ IE+  N +I +   +    + R +A A    ++ 
Sbjct: 622 GAEKTPEKARFDFTHHKPLTREEVRKIEEVANKVIDERRKIRAFTLPRNEAEARYWFSIY 681

Query: 669 G--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                 +  +R+V +E  D        C GTH+S+TGE+  L I+S   I+ G+ R+E +
Sbjct: 682 QGGVPMSKDIRLVEIEGWD-----VEACFGTHLSNTGEVGSLKIISTRKIQDGVVRVEFV 736

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            G R        ++ ++  +  L  +   +V R++ + +E   ++   A+ + +L  E L
Sbjct: 737 AGTRVAEEAAKMEDLIREASEKLSTNPEMLVKRIDALQKELENVKKTVAEYRKRLVSEYL 796

Query: 787 SCHKI-ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
              K    + ++   +   D + ++ V+ AL     + +I+      + +  +       
Sbjct: 797 KAAKALDGIKYV--KLDLRDPELVQEVLRALSSDSPAAVIV------DGRVELAA----- 843

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     R   + + G  GGG+ + A     +  K  + ++ +A+ L
Sbjct: 844 -PKGVDVGKAVREVVREV-GCKGGGKGNRATVVCESEEKVVELLSKLAAKL 892


>gi|307718489|ref|YP_003874021.1| alanyl-tRNA synthetase AlaRS [Spirochaeta thermophila DSM 6192]
 gi|306532214|gb|ADN01748.1| alanyl-tRNA synthetase AlaRS [Spirochaeta thermophila DSM 6192]
          Length = 603

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 157/472 (33%), Positives = 262/472 (55%), Gaps = 22/472 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  ++ FF+++GH  +   SLIP NDPT++FT +GM P      G E P  + +
Sbjct: 1   MTGKELREKYIRFFKEHGHAEISGFSLIPENDPTVLFTTAGMHPLVPYILGAEHPAGKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              Q+C+R G    D+D+VG    H TFFEMLGN+S G YFKE AI+++++ LT  +   
Sbjct: 61  VDYQRCIRTG----DIDSVG-DASHLTFFEMLGNWSLGDYFKEEAIRMSYEFLTSPRWLG 115

Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           +D  +L +TV+        DEE+ ++W+ + G+   +I  ++   N+W    +TGPCGP 
Sbjct: 116 IDPEKLSVTVFAGDEMVPRDEESAEIWRSL-GIPDGRIHFMSREHNWWGPAGKTGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +E+F D G+   G          +Y EIWN VFM++ ++       L +  +DTGMGLER
Sbjct: 175 TEMFIDTGKPPCGPDCKPGCSCGKYFEIWNDVFMEYNKKADGSYERLDRRCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD-- 288
              +LQ K + YD + F  +I+A E+ TG  Y  +    V+ R+I DH+++++F++ D  
Sbjct: 235 TTAILQGKQSVYDTEFFVPIIRAIEESTGAVYGKDPEKDVSIRIISDHIKAATFILGDER 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N G+GYVLRR++RRA+ +AR LG     +      +       YP L + +  + 
Sbjct: 295 GVTPSNVGQGYVLRRLIRRAIRHARKLGVEGNFVHLPAQVVLDMYKEYYPLLAEKRDFVL 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E LR E+++F KTL +G    + +L +L     +++ G +AF+LYDT+G P+++ +++  
Sbjct: 355 EELRGEEDKFLKTLQKGEHEFEKMLPNLLKNPKKVIPGRIAFRLYDTYGFPIEVTEELAR 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
             GL  +D   F++  E  R R++  +  +  G          + + AT  +
Sbjct: 415 EHGLT-VDRAGFDEEFERHRERSKQGADRVFKGGLADHTEETTKLHTATHLL 465



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 90/156 (57%), Gaps = 5/156 (3%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +       +  + +  H+ATHLLH AL  +LG HV Q GS ITP+ LRFD +H + +T  
Sbjct: 443 VFKGGLADHTEETTKLHTATHLLHQALRIVLGPHVQQKGSNITPERLRFDFSHPEKLTPE 502

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +++ +E+ VN  I ++LPV   +M  E+A   GA A    +Y+++V+V SV     G  S
Sbjct: 503 QIRKVEEIVNQKIKEDLPVTMEVMTLEEAKEKGAIAFFTDRYDEKVKVYSV-----GDFS 557

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             +CGG HV  TG +    IV E S  AG+RRI A+
Sbjct: 558 KEVCGGPHVERTGVLGRFKIVKEQSSSAGVRRIRAV 593


>gi|45357960|ref|NP_987517.1| alanyl-tRNA synthetase [Methanococcus maripaludis S2]
 gi|48428515|sp|P61710|SYA_METMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|44920717|emb|CAF29953.1| Alanyl-tRNA synthetase [Methanococcus maripaludis S2]
          Length = 892

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 210/954 (22%), Positives = 382/954 (40%), Gaps = 179/954 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + +   F  FF + GH  +  S ++       ++ T + +  F+   T G  KPV   
Sbjct: 60  TYNEMVKEFTNFFDEKGHTPVKRSPVVAKRWRDDILLTIASIAVFQPWVTSGLVKPVKNP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++  ++L+ 
Sbjct: 120 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDDYKYWTDKTVEYCFELM- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +   +D +                              IT  +++W     G  GPC E+
Sbjct: 175 QRLGIDGK-----------------------------TITFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+++    +   +P   +DTG G+ER A 
Sbjct: 204 I------------------THGVELATLVFMQYKKIGN-DYEEIPLKIVDTGYGIERFAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------------ 271
             Q     Y+  LF  +I+  ++  G+      I+                         
Sbjct: 245 ASQGTPTVYES-LFSEIIEKLKEDAGIPEVDEKIMAESATLAGLMDIENVGDLRVLRQKV 303

Query: 272 --------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y
Sbjct: 304 AEKIGMDVDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRY 363

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              +G +  +   ++      M   YPEL   K  I + L +E++++ +T++RG  +++ 
Sbjct: 364 MEKIGISMSIK-DIISMQLENMKEIYPELSAMKEYIMDVLDAEEKKYIQTVNRGRGIVER 422

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + +   +   +  D   +LYD++GLP +I++D++      G   I+           A  
Sbjct: 423 MAASKSE---ITLDDLIELYDSNGLPPEIVKDVVDDLNKKGKKTIAITVPDNFYTIVAER 479

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           H                + +   T+ + +      +F                     + 
Sbjct: 480 HEEEKPEEVVSTKKELPELEVSKTELLFFKHPTQVEF--------------------EAK 519

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  IV             +  VV D+T FYAE GGQ  D    IG    +++ DVQKK  
Sbjct: 520 VLKIV-------------EKYVVLDKTLFYAEGGGQKYD----IGQLNDIEVMDVQKK-- 560

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
              V H + +    +   ++   +++ NR +L  NH+ATH+++ A + +LG HV Q GS 
Sbjct: 561 NGIVFHKVSDISKFKEGDTVKGAVNWDNRLKLMRNHTATHVINAAATRVLGKHVWQTGSN 620

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
           +  +  R D+TH + I+  ++K IE   N+I+   +PV +  M+R DA       +    
Sbjct: 621 VDTEKGRLDITHYERISREQVKEIERIANEIVLSKMPVNSTFMDRNDAEQKYGFTIYQGG 680

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               D +R++ +E  D        CGGTH S+T E   + ++    I+ G+ R+E  TG 
Sbjct: 681 VVPGDTLRIIEIEGTD-----VEACGGTHCSNTSECGYIKVLKTERIQDGVERLEYSTGM 735

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-----VE 784
            + S +   ++ L   A  L +    +   V+  +EE+++ +    + + ++        
Sbjct: 736 GSVSEIASLEDTLIDSAEILGIPNDQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYEL 795

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                 + +   +   +S     EL S+ D L   + + +I+L+  +      +L    E
Sbjct: 796 ADKFENVGNYEVLVEQVSGT-PNELMSIADNL--AVGNKLIVLMNEND----YLLCKRGE 848

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++    +  DL R        G GGG+ ++AQ  G      +Q    +   L K
Sbjct: 849 NV--ELSMKDLIRNI------GKGGGKDNLAQ--GKYSENKEQITEKIIQILNK 892


>gi|254167135|ref|ZP_04873988.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623991|gb|EDY36553.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 882

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 207/952 (21%), Positives = 366/952 (38%), Gaps = 188/952 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            V S+R +F+EFF+KNGHE +    ++      +   N+ +  F+  + +G   P    +
Sbjct: 58  TVESMRKSFIEFFKKNGHEEIKRYPVVARWRDDVFLVNASIYDFQPHVTSGLAPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q C+R      D+D+VG+T RH T FEM+ + +F       Y+K+  ++ A  L+ +
Sbjct: 118 VISQPCIRMV----DVDSVGKTGRHLTGFEMMAHHAFNYPDNPIYWKDETVEYALKLI-E 172

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E   +   +   V+                           +  W     G  G   E+ 
Sbjct: 173 ELGGEPDNV---VF--------------------------KEKPWIGG--GNAGASFEVI 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMG 229
           +                    +EI  LVFM  ++ +  +          +P   +DTG G
Sbjct: 202 Y------------------GGLEIATLVFMNLKEDDNGDIELNGTRYSEMPVKVVDTGYG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ------------------------------- 258
           LER     +     YD  ++  +I   E                                
Sbjct: 244 LERFVWASKGTPTIYDA-IYPEMISMLEDRIGISRNDRKNEILRQFALLSPRIEIENENE 302

Query: 259 ------------VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
                       +   K     +     +VD+ RS +F++ DGI+P+N   GY+ R ++R
Sbjct: 303 LINEVLKATGASMKEYKEFILPLQKIYAVVDYTRSLAFMLTDGIVPSNVQGGYLARLLIR 362

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           R +     L     ++  L+              +   +L E  +    ER+ KTL +G+
Sbjct: 363 RTLKLLDDLKNP-VMIGELVKMHIERFSDIMDSSMLPIVLEELEIEE--ERYRKTLSKGM 419

Query: 367 VLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            ++   +     +  +  D     YD+HGL  +I+ ++  + G+      +F+  + ++ 
Sbjct: 420 DIVKRHIKK---NGKITTDDLILFYDSHGLLPEIVANVAESMGIRVDIPDNFHGLVAKRH 476

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
                      S   +K     +     T+ + Y+     +F                  
Sbjct: 477 E----------SVARKKKKEKKQYNLPPTRKLYYENPYLREFEANV-------------- 512

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
                   +   G  V           V D T FY E GGQ  D G  I +G   ++ DV
Sbjct: 513 --------VYSNGREV-----------VLDATAFYPEGGGQPADRGKIICNGREYEVVDV 553

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           QK  + +       + G +     +   +D++ R +L  NH+A H+L  A   +LG HV 
Sbjct: 554 QKFGDVVVHFL---KDGHIEKGCKIKGILDWERRERLMRNHTAEHVLLAACRRVLGKHVW 610

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q+G+       RFD+ H KPI   E+K IE+    II   +PV  + MNR +A       
Sbjct: 611 QHGTQKDVKECRFDIAHYKPIGREEIKRIEEEAMRIITSCVPVDAKFMNRTEAEKKYGFV 670

Query: 667 LLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           L          +RVV +   D        CGGTHV++TGEI  L I+    I+ G+ RI 
Sbjct: 671 LYEGGIPPGKEIRVVLIGDFD-----VEACGGTHVNNTGEIGFLKILRTERIQDGVSRII 725

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
             +G  A  +   +++ L + AS L V    +   V+  ++E+++ + I  K K   +  
Sbjct: 726 YTSGLSALEYTQEREDILNNSASVLGVQPEKLPLAVKRFFDEWKEQRKIIEKLKR--SQM 783

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           +    ++A    ++ ++  +D K L  +   L   ++ G+++      E  + V      
Sbjct: 784 ESIKKELASQKAVAEMLP-LDMKALSILARELMSNVERGVLI-----GEDGSFVAFG--- 834

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                  A  +A   A+V+  G  GG+   AQ  G N ++ ++A+      L
Sbjct: 835 -----LEAKRIALEIARVMH-GKAGGKESFAQGKG-NKDRIEEALNTARKLL 879


>gi|307353744|ref|YP_003894795.1| alanyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307156977|gb|ADN36357.1| alanyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 912

 Score =  426 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 212/962 (22%), Positives = 351/962 (36%), Gaps = 176/962 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  +L FF+K GH+ +    +       +  T + +  F+   T G   P    +
Sbjct: 58  SLDEMREAYLSFFEKQGHQRISRYPVAARWRDDIYLTIASIADFQPFVTSGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+K+R ++L  DL  +
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTTFEMMAHHAFNTDKNEIYWKDRTVELC-DLFIE 172

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               +     +T                             ++ W     G  GP  E+ 
Sbjct: 173 SIGGNLED--VTY---------------------------KEHPWIGG--GNAGPSVEVM 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ---------ERFILPKMSIDTG 227
                                +E+  LVFM   +               + +    +DTG
Sbjct: 202 I------------------GGLEVATLVFMSLGKMANGRTPIELEGVPYYPMDLRIVDTG 243

Query: 228 MGLERMATVLQEKTNNYD-------IDLF---------------KHLIQASEQVTGMKYE 265
            GLER     +     YD        DL                K L   ++    M   
Sbjct: 244 YGLERFVWASKGSPTIYDAVFPEMVNDLMISAGLENLLQSSELAKILAMNAKYAGQMDIS 303

Query: 266 GNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYV 300
           G+N++  R                          I DH R  ++++ D I+P+N   GY+
Sbjct: 304 GSNLIKMRKEVAKTIGVGFEKLQALMDPVERVYAITDHTRCLAYMLGDCIVPSNAQEGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR +     +G   PL   L+      +G    E      +I E + +E  ++ +
Sbjct: 364 ARLVIRRTLRMMNEIGLETPL-YELIEKQMKIIGPDSFEQK--PSVINEIIENEVVKYEQ 420

Query: 361 TLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           T++RG  ++  +      K E +       LYD+HG+P +I++DI     +       F 
Sbjct: 421 TMERGARIVRKIAGSYRGKKEPVPLKELITLYDSHGIPPEIVRDIAAEESVEVDLPDDFY 480

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +  S                      E    T+ + Y+ +  ++F           
Sbjct: 481 SVVADMHSENDEGVKEDPYAA----LRKRIEGLPPTKRLYYEQVADTEFDAMVIDAFDN- 535

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                                            V+ DQT FY E GGQ  D G  + +  
Sbjct: 536 --------------------------------YVILDQTLFYPEGGGQPADIGRLLSENA 563

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++    K  E I       E G +R  + +   ID   R  +  +HSATH+L HA   
Sbjct: 564 MVKVVHTFKLGEVILHRI---EGGDIRRGVQVKGVIDENFRLTMMRHHSATHVLLHAAKH 620

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H+ Q G+    +  R D+ H K IT  EL+ IE   N II +N  +V    +R  A
Sbjct: 621 VLGPHIHQAGAQKGFESSRIDLRHFKHITPEELQKIEIEANRIILENQKIVIEWEDRTTA 680

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                       Y   V    +            C GTH  STGEI  L I+    ++ G
Sbjct: 681 EQKYGF----DLYQGGVPPGKMIRIVKVSGDVQACAGTHCRSTGEIGCLKIIRVEHVQDG 736

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           I R+E   G  A +++   +  L S    L V + N+   V+  + E++  +    K   
Sbjct: 737 IERVEFAAGLSAIAYMEKMEGLLDSSCQTLSVQRENLPSSVDRFFSEWKDQKKEIEKLGK 796

Query: 780 QLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L    +E LS  +I  ++   H +     KEL S+      +   G++       E + 
Sbjct: 797 ELGELRLEGLSSEEIGGISVAVHEV-NASPKELVSIATKFANEGGVGLVA----GGEDRI 851

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            V+        +R NA DL      ++GG G GG+P +AQ  G       +A+    + +
Sbjct: 852 HVVAASG---TERINAADLVTKVCGMIGGKG-GGKPGLAQGVGTEKENLSEALQQGKNMI 907

Query: 897 KK 898
            +
Sbjct: 908 SE 909


>gi|300705740|ref|XP_002995226.1| hypothetical protein NCER_101964 [Nosema ceranae BRL01]
 gi|239604171|gb|EEQ81555.1| hypothetical protein NCER_101964 [Nosema ceranae BRL01]
          Length = 337

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 139/326 (42%), Positives = 202/326 (61%), Gaps = 9/326 (2%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V  ++  F  +F+  GHE++ SSS+IP NDP+L+FTNSGMV FKNI  GQE    +   
Sbjct: 5   TVKKLKRAFFSYFKSKGHEIIKSSSVIPSNDPSLLFTNSGMVQFKNILMGQET-NLKRAC 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           ++Q+C+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+ AI+ AWD L     L+Q
Sbjct: 64  SIQRCIRAGGKHNDLDDVGKDTYHHTFFEMMGNWSFGDYFKKEAIEYAWDFLVNILKLEQ 123

Query: 123 RRLYITVYDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            RLY+T Y + D E++ +WK+   L +++II    NDNFW M +TGPCGPC+EI +D+  
Sbjct: 124 DRLYVTYYKDMDSESYNIWKEF--LPSERIIEADKNDNFWEMGDTGPCGPCTEIHYDRIG 181

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                    +++    IEIWN+VF+++ +        L +  IDTG+G ER+ ++L    
Sbjct: 182 GRDASR-LVNQDDPDVIEIWNIVFIEYNRTPTG-LEPLERKCIDTGIGFERLLSILNNVK 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +NY  + F  +I+  E +T  KYE          R + DH R+ +  + D +  +NEG+G
Sbjct: 240 SNYLTNCFIPIIKNIENMTDKKYEDKLTIEDTAFRAVSDHCRTIAVCLIDNVEFSNEGQG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMH 324
           YVLRRI+RRA+ YA  +   +     
Sbjct: 300 YVLRRILRRAVRYAHDILKMQRRGHR 325


>gi|307594165|ref|YP_003900482.1| alanyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
 gi|307549366|gb|ADN49431.1| alanyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
          Length = 918

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 200/939 (21%), Positives = 352/939 (37%), Gaps = 163/939 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  FL FF+++GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 58  SIRDVRERFLNFFERHGHVRIKRYPVVARWRTDVYLVGASIYDFQPWVTEGIVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +  ++ A +  TK
Sbjct: 118 TLSQPSIR----FTDIDKVGRSGRHLTGFEMMAHHAFNYPDKYIYWIDETVEYAHEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  L           +D E                  IT  +N W     G  G C E+ 
Sbjct: 174 ELGL-----------KDHE------------------ITYKENIWEGG--GNAGECLEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                                +EI  LVFM + +    +   +P   +DTG GLER+  +
Sbjct: 203 V------------------SGLEIATLVFMHY-RTVNGKYVEMPMKIVDTGYGLERIYWL 243

Query: 237 LQEKTNNYDIDLFKHLIQAS---------------------------------------- 256
           L  K   YD  +F   I+                                          
Sbjct: 244 LTGKPTVYDA-VFGPFIEKLRSKLGLPKPSNEMLMHMATYFGQLDPEVTSIEKAYEYISS 302

Query: 257 ---EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                V  ++          ++ DH R+ S+++ADG++P+N G GY+ R ++RR +    
Sbjct: 303 KVGMDVNEVRNILKAQETLYILSDHGRTLSWMMADGVIPSNSGVGYLGRLLLRRMLRSMY 362

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           + G   PL   ++      +   YPE+ + +  I E +  E+ +F + L +   ++D V+
Sbjct: 363 VAGIEMPLT-EVMDMELEFLRDDYPEVYEERQTILELVDLEERKFKELLRQAPGIIDRVI 421

Query: 374 ---SHLGKDEILNGDVAFKLYDTHGLPLDIM-QDILCARGLAGIDIISFNQALEEQRSRA 429
                      L  D    LYD+ GLP +++ +      GL+ +    F   L  +  R 
Sbjct: 422 RDRERRTGKRELTVDDLIMLYDSQGLPPEVVREVASSRLGLSVVVPDDFYSRLAARYQRQ 481

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
                         +     +    T+ + Y+ +R                         
Sbjct: 482 VGEEKPKV-----DVNPVEVQDLPQTRELFYENMR------------------------- 511

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                + Q    V   + G+   VV DQT FY E GGQ+ D G         ++ DVQ+ 
Sbjct: 512 -----LFQFNAKVLRVIRGK--YVVLDQTAFYPEGGGQVADHGVIRHSRGEARVIDVQRV 564

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              I       E        ++   +D   R  L   H+ATH+L  ++  +LG HV Q G
Sbjct: 565 GPVIVHVI---EGEPPMEGETVEGIVDATRRLDLMRMHTATHILLQSIRRVLGRHVWQAG 621

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +       R DVTH K  +  E++ IE+  N ++  N PV+ R + R DA +     +  
Sbjct: 622 AEKNVPFSRLDVTHYKLPSRDEIRKIEELANQMVVANYPVIIRWLGRTDAESKFGVYIYQ 681

Query: 670 --TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                  ++R+V V   D   +    CGG HV STGEI ++ IV    I+ G+ R    T
Sbjct: 682 GGAVPGAKLRIVQVGP-DDNPYDVEACGGMHVGSTGEIGMIKIVKVEKIQEGVVRFIFTT 740

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G+ A ++    ++ +  ++  +   + +VV  V+E+  +  K++        +    D++
Sbjct: 741 GRHALNYTESLEDSINEVSELIGKGREDVVKGVKELLSDVSKMEGRIKALTRKAIKGDIA 800

Query: 788 CH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
                   I  V F        D   ++           + +++++          ++ +
Sbjct: 801 EAMGRETAINGVGFTYMEYENEDRNYIQEFAKEYLGARPNTVLLIINRVSNG-TEYMVYL 859

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGG----GRPHMAQS 877
           + +   R +  +L       + G GGG    G+   AQ 
Sbjct: 860 SPETAKRVSIKELMARLNASVNGKGGGSTTYGQ-GFAQG 897


>gi|325968423|ref|YP_004244615.1| alanyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
 gi|323707626|gb|ADY01113.1| alanyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
          Length = 912

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 202/939 (21%), Positives = 353/939 (37%), Gaps = 166/939 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  FL FF+K+GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 58  SIRDVREKFLNFFEKHGHARIKRYPVVARWRTDVYLVGASIYDFQPWVTEGIVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +  ++ A +  TK
Sbjct: 118 TLSQPSIR----FTDIDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETVEYAHEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  L            D+E                  IT  +N W     G  G C EI 
Sbjct: 174 EIGL-----------RDDE------------------ITYKENIWEGG--GNAGECLEIL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                                +E+  LVFM + +    +   +P   +DTG GLER+  +
Sbjct: 203 V------------------GGLEVATLVFMHY-RTVNGKYVEMPMKIVDTGYGLERIYWL 243

Query: 237 LQEKTNNYDIDLFKHLIQAS---------------------------------------- 256
           L  K   YD  +F   I+                                          
Sbjct: 244 LTGKPTVYDA-VFGSFIEQLRSKLGLPRPSNEMLMHMATYFGQLDPEVTSIEKAYEYISG 302

Query: 257 ---EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                +  +K          ++ DH R+ S+++ADG +P+N G GY+ R ++RR +    
Sbjct: 303 KVGMNINEIKNILKAQETLYILSDHGRTLSWMMADGAIPSNSGVGYLGRLLLRRMLRSMY 362

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           + G   PL   ++      +   YPE+ + +  I E +  E+++F + L +   ++D V+
Sbjct: 363 VSGIEMPLT-EIMNMELEFLKGDYPEVYEERQTILELVDLEEKKFKELLRQAPSIIDRVI 421

Query: 374 SH---LGKDEILNGDVAFKLYDTHGLPLDIM-QDILCARGLAGIDIISFNQALEEQRSRA 429
                      L  D    LYD+ GLP +I+ +      GL+      F   L  +  R 
Sbjct: 422 KDRERKTGKRELTVDDLITLYDSQGLPPEIVREVSSSKLGLSISVPDDFYSRLAAKYQRQ 481

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
                         +     +    T+ + Y+ +R                         
Sbjct: 482 IGEEKPKV-----DVNPVEVQDLPQTRELFYENMR------------------------- 511

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                + Q    V   + G+   VVFDQT FY E GGQ+ D G         ++ DVQ+ 
Sbjct: 512 -----LFQFNAKVLRVIRGK--YVVFDQTAFYPEGGGQVADHGVIRHSRGEARVIDVQRV 564

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              I       E        ++   +D   R  L   H+ATH+L  ++  +LG H+ Q G
Sbjct: 565 GPVIVHAI---EGEPPMDGENIEGIVDATRRLDLMRMHTATHILLQSIRRVLGRHIWQAG 621

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +       R DVTH K  T  E+K IE+  N ++  N PV+ R ++R DA +     +  
Sbjct: 622 AEKNVPFSRLDVTHYKLPTRDEIKKIEELANQMVVANYPVIIRWLSRTDAESKFGVYIYQ 681

Query: 670 TKYNDRVRVVSVE-YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                  R+  V+   D   +    CGG HV +TGEI ++ IV    I+ G+ R    TG
Sbjct: 682 GGAVPGARLRIVQVGTDNDPYDVEACGGMHVGNTGEIGMIKIVKVEKIQEGVVRFIFTTG 741

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVED 785
           + A ++    ++ +  ++  +  S+  VV  V+E+  +  +++    +  ++ ++ ++ +
Sbjct: 742 RHAVNYADSLEDSINEISELIGKSREEVVKGVKELLNDMGRMESRIKVLTRKAIKGDIAE 801

Query: 786 LSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
               +I    +          D   ++           + +++++          +I + 
Sbjct: 802 AMGKEIIVNGIGLTYMEYENEDKNYIQEFAKEYLGSRPNTVLLVINRVNNG-TEYMIYLG 860

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGG----------GRP 872
            +     NA DL       + G GGG          GRP
Sbjct: 861 SEAAKHVNAKDLIAKLNPGVNGRGGGSVTYGQGFTQGRP 899


>gi|171185364|ref|YP_001794283.1| alanyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
 gi|205830275|sp|B1YDH4|SYA_THENV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170934576|gb|ACB39837.1| alanyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
          Length = 892

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 209/944 (22%), Positives = 346/944 (36%), Gaps = 163/944 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +++ +R  FL FF++N H  +    ++      +    + +  F+   T G   P    +
Sbjct: 56  SLADLRERFLRFFERNSHVRIRRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPANPL 115

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   Q A++  T+
Sbjct: 116 AISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETTQYAYEFFTR 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E                           G+  D+I   T  ++ W     G  G C E+ 
Sbjct: 172 EL--------------------------GIPPDEI---TFKESMWEGG--GNAGECFEVL 200

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                              R +E+  LVFM +E         LP   +DTG GLER+  +
Sbjct: 201 I------------------RGLEVATLVFMHYE-VKDGRYVELPLKIVDTGYGLERIYWL 241

Query: 237 LQEKTNNYD--------------------------------------IDLFKHLIQASEQ 258
           L+     YD                                      I L K     +E+
Sbjct: 242 LKGTPTVYDAVFGPYLAKARQRLGVPEPPAEVMGKASVYFGQMDPEVIGLEKAYDIIAEK 301

Query: 259 VTGMKYEGNN----IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
           +                  V+ DH R+ S++IADG++P+N G GY+ R ++RR +   RL
Sbjct: 302 IGVDPKWLREVVRPQEALYVLADHSRTVSWMIADGVIPSNTGAGYLARLLIRRILKNLRL 361

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
            G   PL+  L      E+   YPE+ +A+ LI E +  E+ R+ + L      +   L 
Sbjct: 362 AGVDAPLV-ELFDMHLAELKREYPEVWEARGLILELVDMEERRYREVLKSAPAAVKKALE 420

Query: 375 HLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
              +     L+ D    LYD+ G+P ++  ++  + G        F   L  +  +    
Sbjct: 421 EARRRGRAGLDADDLVALYDSQGIPPEVAAEVAKSLGTEVKVPDDFYAKLAARHVKREKK 480

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                    +            T+ + Y+      F     +V+                
Sbjct: 481 PESSPVEMGK------VADLPRTRELFYEDSYMRSFKARVLRVI---------------- 518

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                               VV DQT FY E GGQ  D G     G   ++ DVQ+    
Sbjct: 519 ----------------DGRYVVLDQTAFYPEGGGQPADRGVLKFQGGEAKVVDVQRVGHV 562

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
                 +VE         +V  +D++ R  L   H+ TH+L  ++  +LGSH+ Q G+  
Sbjct: 563 ---VVHVVEGQPPPEGAEVVGEVDWERRYSLMKMHTGTHVLIQSIRRVLGSHIWQAGAQK 619

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--T 670
                R DVTH +  T+ E+  IE+  N  +  +LPV  +IM R +A A     L     
Sbjct: 620 DIPSSRIDVTHHRLPTAEEVARIEELANRAVQADLPVYAKIMPRNEAEAKYGFVLYQGGV 679

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                +RV+ +   D   +    CGGTH+ STGEI L+ I     I  G+ R    TG  
Sbjct: 680 VPAREIRVLQIGP-DEQPYDVQACGGTHLRSTGEIGLIKIQKVERIADGVVRFVFTTGMH 738

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           A +++   + +    AS    S+  +V  V  + +   +      +             K
Sbjct: 739 ALAYVQELERRAAEAASIAGGSRDELVEAVRRLAQRAEEADRRARRYAELYAAALAENLK 798

Query: 791 IADVNFMSHIISEVDSKEL-KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
              V      + E+D +EL + +  A   + +  +++ VG     +A+V           
Sbjct: 799 AEQVGRHRLAVVELDDEELARKIALAATSRDRDLVLVFVG---GGRATVY-------TGG 848

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP-NGNKADQAIAGV 892
            +   + +   +V  G  GGG    AQ     +     +AI   
Sbjct: 849 VDVAPIVKALREV--GFRGGGSKTFAQGQYKGDIQTLKEAIRRA 890


>gi|124028451|ref|YP_001013771.1| alanyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
 gi|205830069|sp|A2BN65|SYA_HYPBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123979145|gb|ABM81426.1| Alanyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
          Length = 921

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 208/928 (22%), Positives = 355/928 (38%), Gaps = 159/928 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
           +V   R  F+EFF+++GHE +    ++      L  T + +V F+  + +G   P    +
Sbjct: 60  SVRDARRKFIEFFKRHGHEYVEPRPVVARWREDLYLTIASIVAFQPHVTSGIVPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             VQ C+R      D+D VG T  RH T FEM G+ +F       Y+KE  ++ A++  T
Sbjct: 120 VIVQPCIRLE----DIDFVGLTIGRHLTSFEMGGHHAFNYPDKTVYWKEETVRFAFEFFT 175

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE                           G+  D +   T  +++W     G  GP  E+
Sbjct: 176 KEL--------------------------GIPEDMV---TFKESWWEGG--GNAGPSFEV 204

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+ +    +   +    +DTG G+ER+A 
Sbjct: 205 TV------------------GGLELATLVFMQY-RVVDGKYEPMDIRVVDTGYGIERIAW 245

Query: 236 VLQEKTNNYDI------DLFKHLIQASE-------------------------------- 257
             Q+    +        D F+ L+  +E                                
Sbjct: 246 FSQDVPTAFHAIYGELLDEFRKLLGVAEPPRELLWGAARAAGRLDPEDPESVERYYQVVA 305

Query: 258 -----QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                 +   +           ++DH ++ + ++ DGI+P+N G GY+ R ++RRA+   
Sbjct: 306 ERAGLSIREARELLGREAALYTLLDHTKTIALMLGDGIVPSNTGEGYLARLVIRRALRTL 365

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           R LG    L + +           YP L+     I   +R E+ER+ KTL+RGL  +  +
Sbjct: 366 RRLGADIELAVLVERQARYWGADYYPRLLSHLDYILRVVRLEEERYSKTLERGLREVTKL 425

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA- 431
           L    K  I   D    LYD+HG+P D++ +     G+      +F   + ++   + A 
Sbjct: 426 LKRKKKLSI---DDLITLYDSHGVPPDMVAEAASKLGVNVDVPHNFYALVAKKHGASGAV 482

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                      +        + AT+ + ++     +F      V                
Sbjct: 483 AREVEEKPKLPRDIEEWARGFPATRRLFHENPYAREFTANLLGVRGS------------- 529

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                                V+ D T FY   GGQL DTG     G   ++  V+K  +
Sbjct: 530 --------------------HVILDATLFYPTGGGQLHDTGVLRLCGEEYRVLRVEKVGD 569

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            +       +R    +       ID+  R +L  +H+A H+L  A   +LG HV Q G+ 
Sbjct: 570 VVVHVL---DREPSCSSGEAWGRIDWDRRYRLMRHHTAVHVLLGAARRVLGDHVWQAGAE 626

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
            TP+  R D+TH +  +  E++ IE+  N  I   + V    ++R  A       +    
Sbjct: 627 KTPEKARLDITHYELPSREEIRKIEELANSAILARIHVDIEEIDRNTAEKLYGFRIYQGG 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                R+R+V +   D        C GTHV++T EI  + IV+   ++ G+ R E + G 
Sbjct: 687 VPMTPRLRIVRIGDWD-----VEACFGTHVANTAEIGAIKIVNVEKLQDGVVRFEIVAGS 741

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-----VE 784
               +    ++KL ++AS +   +G  V RVE++ EE ++ +   ++ +  L        
Sbjct: 742 EVARYAASLEDKLDTIASIVGGGRGEAVKRVEKLAEELKEAKRQVSRLRSFLADMLVKSV 801

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             +   I  V          D    + VM  L ++    I + V    E    + I    
Sbjct: 802 KATAKSIDGVKVYVMTEELPDENIYREVMLKLSREEPDSITIAVIRRGED-LLMEIGAGS 860

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRP 872
               R +   +A+  A    G  GGG+P
Sbjct: 861 KAAKRVDLRAVAKQLAS--KGLRGGGKP 886


>gi|159904900|ref|YP_001548562.1| alanyl-tRNA synthetase [Methanococcus maripaludis C6]
 gi|205830141|sp|A9A6Q2|SYA_METM6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|159886393|gb|ABX01330.1| alanyl-tRNA synthetase [Methanococcus maripaludis C6]
          Length = 892

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 202/954 (21%), Positives = 382/954 (40%), Gaps = 179/954 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + +   F  FF + GH  +  S ++       ++ T + +  F+   T G  KPV   
Sbjct: 60  TYNEMVKEFTNFFAEKGHSPVKRSPVVAKRWRDDILLTIASIAVFQPWVTNGLVKPVKNP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++  ++L+ 
Sbjct: 120 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDEYKYWTDKTVEYCFELM- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +   +D +                              IT  +++W     G  GPC E+
Sbjct: 175 QRLGIDGK-----------------------------TITFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+++    +   +P   +DTG G+ER A 
Sbjct: 204 I------------------THGVELATLVFMQYKKVGN-DYEEIPLKIVDTGYGIERFAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------------ 271
             Q     Y+  LF  +I+  ++  G+      I+                         
Sbjct: 245 ASQGTPTVYES-LFSEIIEKLKEDAGIPEVDEKIMAESATLAGLMDIENVGDLRVLRQKV 303

Query: 272 --------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y
Sbjct: 304 AEKIGMDVDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRY 363

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              +G +  +   ++      M   YPEL + K  + + L +E++++ +T++RG  +++ 
Sbjct: 364 MEKIGISMSIK-DIIAMQLENMKEIYPELSEMKEYVMDVLDAEEKKYIQTVNRGRGIVER 422

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + +   +   +  D   +LYD++GLP +I++D++      G   I+           A  
Sbjct: 423 MAASKSE---ITLDDLIELYDSNGLPPEIVKDVVDELNKKGKKTIAITVPDNFYTIVAER 479

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           H                + +   T+ + +     ++F                     + 
Sbjct: 480 HEEEKPEEVVSTKKELPELEVSETELLFFKHPTQAEF--------------------EAK 519

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           +  I              +  VV D+T FYAE GGQ  D G      +         + +
Sbjct: 520 ILKI-------------AEKYVVLDKTLFYAEGGGQKYDIGQLNDIEV------SDVQKK 560

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
              V H + +    +   ++  T++++NR +L  NH+ATH+++ A + +LG H+ Q GS 
Sbjct: 561 NGIVFHKVSDISKFKEGDTVKGTLNWENRLKLMRNHTATHVINAAATRVLGKHIWQTGSN 620

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
           +  +  R D+TH + I+  ++K IE   N+++   +PV +  M+R DA       +    
Sbjct: 621 VDTEKGRLDITHYERISREQVKEIERIANEMVLSKMPVNSTFMDRNDAEQKYGFTIYQGG 680

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               D +R++ +E  D        CGGTH S+T E+  + ++    I+ G+ R+E  TG 
Sbjct: 681 VVPGDTLRIIEIEETD-----VEACGGTHCSNTSEVGYIKVLKTERIQDGVERLEYSTGM 735

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-----VE 784
            + S +   ++ L   A  L +    +   V+  +EE+++ +    + + ++        
Sbjct: 736 GSVSEIAIIEDTLIDSAEILGIPNDQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYEL 795

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                K+ D   +   +S     EL S+ D L   + + +I+L+  S      +L    E
Sbjct: 796 ADKFEKVGDYEVLVEQVSGT-PNELMSIADNL--AVGNKLIVLMNESD----YLLCKRGE 848

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++    +  +L R        G GGG+ ++AQ  G      +Q    ++  L K
Sbjct: 849 NV--ELSMKELIRNI------GKGGGKDNLAQ--GKYSETKEQITEKISQILNK 892


>gi|18314158|ref|NP_560825.1| alanyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
 gi|22096201|sp|Q8ZSV6|SYA_PYRAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|18161747|gb|AAL65007.1| alanyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
          Length = 892

 Score =  423 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 202/947 (21%), Positives = 350/947 (36%), Gaps = 169/947 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +++ +R  FL FF++ GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 56  SLTELRERFLRFFERRGHARIKRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPANPL 115

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   + A++  TK
Sbjct: 116 VISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKFIYWIDETAEYAYEFFTK 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E                           G+  ++I   T  ++ W     G  G C E+ 
Sbjct: 172 EL--------------------------GIPPEEI---TFKESIWEGG--GNAGECFEVL 200

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                              R +E+  LVFM +E   + +   LP   +DTG GLER+  +
Sbjct: 201 V------------------RGLEVATLVFMHYE-VKEGKYVELPLKIVDTGYGLERIYWL 241

Query: 237 LQEKTNNYD--------------------------------------IDLFKHLIQASEQ 258
           ++     YD                                      I L K     +E+
Sbjct: 242 IRGTPTIYDAVFGPYLDKARRSLGFPEPPSELMGKASVYFGQMDPEVIGLEKAYDIIAEK 301

Query: 259 VTGMKYEGNN----IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
           +                  V+ DH R+ S++IADG++P+N G GY+ R ++RR +   +L
Sbjct: 302 IGVDPKWLREVFKPQEALYVLADHSRTVSWMIADGVIPSNSGAGYLARLLLRRILKNLKL 361

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           +G   PL+  L      E+ + YPE+ +A+ LI E +  E+ ++ + L     ++     
Sbjct: 362 VGVETPLV-ELFDMHLKELKADYPEVWEARNLILELVDIEERKYREILKSAPGVVKKAYE 420

Query: 375 HLGKDEILN--GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
              +        +    LYD+ GLP +I+ +   + G+       F   L  + ++    
Sbjct: 421 EARRRGRAGFDAEDLVSLYDSFGLPPEIVAETAKSLGVEVKIPDDFYSRLAARHAKREKQ 480

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                    +            T+ + Y+      F  +  +V+                
Sbjct: 481 PEKTLVEMAK------IADLPRTRELFYEDPYMKSFKAKVLRVI---------------- 518

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                 G+            VV DQT FYAE GGQ  D G     G   ++ DVQ+    
Sbjct: 519 -----DGK-----------YVVLDQTAFYAEGGGQPADIGILKHGGGAAKVVDVQRVGHV 562

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I                 +V  ID+  R  L   H+ TH+L  ++  +LG H+ Q G+  
Sbjct: 563 IVHVVEGEAP---PEGSEVVGEIDWDRRYALMKMHTGTHVLIQSIRRVLGPHIWQAGAQK 619

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--T 670
                R DVTH K  T+ E+  IE   N ++  N+PV  +I+ R +A A     L     
Sbjct: 620 DIPASRIDVTHFKLPTAEEVAEIERLANSVVQANMPVHVKILPRNEAEAKYGFILYQGGV 679

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                +RVV +   D   +    CGGTH+ STGEI L+ I     I  G+ R    TG  
Sbjct: 680 VPAREIRVVQIGP-DEAPYDVQACGGTHLKSTGEIGLIKIQKVERIADGVVRFIFTTGLH 738

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQLNVEDLS 787
           A  ++   + ++   AS    ++ N+V  V  + +   + +    +         V++L 
Sbjct: 739 ALKYVQEIERQVAEAASLAGGNRDNLVDSVRRLLQRAEEAERKAQRYTELYAAEFVKNLK 798

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
              +         + + +    K V      + +  ++++VG     + +V         
Sbjct: 799 AEPVGKYRLAVVELEDEELA--KKVAQIATGRDKELVLLVVG---GGRVTVY-------T 846

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQS--GGPNGNKADQAIAGV 892
              +   + +   +V  G  GGG    AQ    G +      A+   
Sbjct: 847 GGADVGPIVKALREV--GFRGGGSRTFAQGVYSG-DVKTLIDAVKRA 890


>gi|134046268|ref|YP_001097753.1| alanyl-tRNA synthetase [Methanococcus maripaludis C5]
 gi|189082111|sp|A4FZA5|SYA_METM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|132663893|gb|ABO35539.1| alanyl-tRNA synthetase [Methanococcus maripaludis C5]
          Length = 892

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 205/954 (21%), Positives = 381/954 (39%), Gaps = 179/954 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + +   F  FF + GH  +  S ++       ++ T + +  F+   T G  KPV   
Sbjct: 60  TYNEMVKEFTNFFAEKGHSPVKRSPVVAKRWRDDILLTIASIAVFQPWVTSGLVKPVKNP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++  ++L+ 
Sbjct: 120 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDEYKYWTDKTVEYCFELM- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   +D++    TV                         T  +++W     G  GPC E+
Sbjct: 175 KRLGIDEK----TV-------------------------TFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+++    +   +P   +DTG G+ER A 
Sbjct: 204 I------------------THGVELATLVFMQYKKVGN-DYEEIPLKIVDTGYGIERFAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------------ 271
             Q     Y+  LF  +I+  ++  G+      I+                         
Sbjct: 245 ASQGTPTVYES-LFSEVIEKLKKDAGIPEVDEKIMAESATLAGLMDIENVGDLRVLRQKV 303

Query: 272 --------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y
Sbjct: 304 AEKIGMDVDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRY 363

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              +G +  +   ++      M   YPEL + K  I + L SE++++ +T++RG  +++ 
Sbjct: 364 MEKIGISMSIK-DIIAMQLENMKEIYPELSEMKEYIMDVLDSEEKKYIQTVNRGRGIVER 422

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +         +  D   +LYD++G+P +I++D++      G   I+           A  
Sbjct: 423 M---AVSKSEITLDDLIELYDSNGIPPEIVKDVVDEINKKGKKTIAITVPDNFYTIVAER 479

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           H                + +   T+ + +      +F  +  K +               
Sbjct: 480 HEEEKPEEVVSTKKELPELEVSETELLFFKHPTQVEFEAKVLKTV--------------- 524

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                             +  V+ D+T FYAE GGQ  D G   G  +         + +
Sbjct: 525 ------------------EKYVLLDKTLFYAEGGGQKYDIGQLNGIEV------SDVQKK 560

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
              V H + +    +   ++  T++++NR +L  NH+ATH+++ A + +LG H+ Q GS 
Sbjct: 561 NGIVFHKVSDISKFKEGDTVKGTLNWENRLKLMRNHTATHVINAAATRVLGKHIWQTGSN 620

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
           +  +  R D+TH + I+  ++K IE   N+I+   +PV +  M+R D+       +    
Sbjct: 621 VDTEKGRLDITHYERISREQVKEIERIANEIVLSKMPVNSTFMDRNDSEQKYGFTIYQGG 680

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               D +R++ +E  D        CGGTH S+T E+  + ++    I+ G+ R+E  TG 
Sbjct: 681 VVPGDTLRIIEIEGTD-----VEACGGTHCSNTSEVGYIKVLKTERIQDGVERLEYSTGM 735

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-----VE 784
            + S +   ++ L   A  L +    +   V+  +EE+++ +    + + ++        
Sbjct: 736 GSVSEIAVLEDILIDSAEILGIPNDQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYEL 795

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                K  D   +   +S     EL S+ D L   I + +I+L+  +      +L    E
Sbjct: 796 ADKFEKHGDYEVLVEQVSGT-PNELMSIADNL--AIGNKLIVLMNEND----YLLCKRGE 848

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++    +  +L R        G GGG+ ++AQ  G      +Q    ++  L K
Sbjct: 849 NV--ELSMKELIRNI------GKGGGKDNLAQ--GKYSETKEQITEKISQILNK 892


>gi|254167730|ref|ZP_04874580.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289597120|ref|YP_003483816.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623258|gb|EDY35823.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289534907|gb|ADD09254.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 882

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 207/955 (21%), Positives = 365/955 (38%), Gaps = 194/955 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            V S+R +F+EFF++NGHE +    ++      +   N+ +  F+  + +G   P    +
Sbjct: 58  TVESMRRSFIEFFKRNGHEEIKRYPVVARWRDDVFLVNASIYDFQPHVTSGLAPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q C+R      D+D+VG+T RH T FEM+ + +F       Y+K+  ++ A  L+ +
Sbjct: 118 VISQPCIRMV----DVDSVGKTGRHLTGFEMMAHHAFNYPDNPIYWKDETVEYALKLI-E 172

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E   +   +   V+                           +  W     G  G   E+ 
Sbjct: 173 ELGGEPDNV---VF--------------------------KEKPWIGG--GNAGASFEVI 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMG 229
           +                    +E+  LVFM  ++ +  +          +P   +DTG G
Sbjct: 202 Y------------------GGLELATLVFMNLKEDDNGDIELNGTRYSEMPVKVVDTGYG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ------------------------------- 258
           LER     +     YD  ++  +I   E                                
Sbjct: 244 LERFVWASKGTPTIYDA-IYPEMISMLEDRIGISRNDRKNEILRQFALLSPRIEIENENE 302

Query: 259 ------------VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
                       +   K     +     +VD+ RS +F++ DGI+P+N   GY+ R ++R
Sbjct: 303 LINEVLKATRASMKEYKEFILPLQKIYAVVDYTRSLAFMLTDGIVPSNVQAGYLARLLIR 362

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           R +     L     ++  L+                   ++ E L  E+ER+ KTL +G+
Sbjct: 363 RTLKLLDDLKNP-VMIGELVKMHIERFSDIMDS--SMLSIVLEELEIEEERYRKTLSKGM 419

Query: 367 VLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            ++   +     +  +  D     YD+HGL  +I+ ++  + G+      +F+  + ++ 
Sbjct: 420 DIVKRHIKK---NGKITTDDLILFYDSHGLLPEIVANVAESMGIRVDIPDNFHGLVAKRH 476

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
                      S   +K     +     T+ + Y+     +F                  
Sbjct: 477 E----------SVARKKKKEKKQYNLPPTRKLYYENPYLREFEANV-------------- 512

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
                   +   G  V           V D T FY E GGQ  D G  I DG   ++ DV
Sbjct: 513 --------VYSNGREV-----------VLDATAFYPEGGGQPADRGKIICDGREYEVVDV 553

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           QK  + +       + G +     +   +D++ R +L  NH+A H+L  A   +LG HV 
Sbjct: 554 QKFGDVVVHFL---KDGHIEKGCKIKGILDWERRERLMRNHTAEHVLLAACRRVLGKHVW 610

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q+G+       RFD+ H KPI   E+K IE+    II   +PV  + MNR +A       
Sbjct: 611 QHGTQKDVKECRFDIAHYKPIGREEIKRIEEEGMRIITSCVPVDAKFMNRTEAEKKHGFV 670

Query: 667 LLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           L          +RVV +   D        CGGTHV++TGEI  L I+    I+ G+ RI 
Sbjct: 671 LYEGGIPPGKEIRVVRIGDFD-----VEACGGTHVNNTGEIGFLKILRTERIQDGVSRII 725

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQL 781
             +G  A  +   +++ L + AS L V    +    +  ++E+++ + I  K K   ++ 
Sbjct: 726 YTSGLSALEYTQEREDILNNSASVLGVQPEKLPLAAKRFFDEWKEQRKIIEKLKRSRMES 785

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
             ++L+  K          +  +D K L  +   L   ++ G+++      E  + V   
Sbjct: 786 IKKELASQKA------VAEMLPLDMKALSILARELMSSVERGVLI-----GEDGSFVAFG 834

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                     A  +A   A+V+  G  GG+   AQ  G N ++ ++A+      L
Sbjct: 835 --------LEAKRIALEIARVMH-GKAGGKESFAQGKG-NKDRIEEALNTARKLL 879


>gi|150403315|ref|YP_001330609.1| alanyl-tRNA synthetase [Methanococcus maripaludis C7]
 gi|189082112|sp|A6VJ32|SYA_METM7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150034345|gb|ABR66458.1| alanyl-tRNA synthetase [Methanococcus maripaludis C7]
          Length = 892

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 206/954 (21%), Positives = 379/954 (39%), Gaps = 179/954 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + +   F  FF + GH  +  S ++       ++ T + +  F+   T G  KPV   
Sbjct: 60  TYNEMVREFTNFFAEKGHSPVKRSPVVAKRWRDDILLTIASIAVFQPWVTNGLVKPVKNP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++  ++L+ 
Sbjct: 120 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDDYKYWTDKTVEYCFELM- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               +D +                              IT  +++W     G  GPC E+
Sbjct: 175 NRLGIDGK-----------------------------TITFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+ ++   E   +P   +DTG G+ER A 
Sbjct: 204 I------------------THGVELATLVFMQY-KKVGSEYEEIPLKIVDTGYGIERFAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------------ 271
             Q     Y+  LF  +I+  ++  G+      I+                         
Sbjct: 245 ASQGTPTVYES-LFSEVIEKLKEDAGIPGVDEKIMAESATLAGLMDIENVGDLRVLRQKV 303

Query: 272 --------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y
Sbjct: 304 AEKIGMDVDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRY 363

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              +G +  +   ++      M   YPEL + K  I + L SE++++ +T++RG  +++ 
Sbjct: 364 MEKIGISMSIK-DIISMQLENMKEIYPELSEMKEYIMDVLDSEEKKYIQTVNRGRGIVER 422

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + +   +   +  D   +LYD++GLP +I++D++      G   I+           A  
Sbjct: 423 MAASKSE---ITLDDLIELYDSNGLPPEIVKDVVDELNKKGKKTIAITVPDNFYTIVAER 479

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           H                + +   T+ + +      +F  +  K +               
Sbjct: 480 HEEEKPEEVVSTKKELPEVEVSETELLFFKHPTQVEFEAKVLKTV--------------- 524

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                             +  VV D+T FYAE GGQ  D G   G  +      +  + +
Sbjct: 525 ------------------EKYVVLDKTLFYAEGGGQKYDIGQINGIEV------IDVQKK 560

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
              V H + +    +    +  T++++NR +L  NH+ATH+++ A + +LG H+ Q GS 
Sbjct: 561 NGIVFHKVSDISKFKEGDIVKGTVNWENRLKLMRNHTATHVINAAATRVLGKHIWQTGSN 620

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
           +  +  R D+TH + I+  ++K IE   N+I+   +PV +  M+R DA       +    
Sbjct: 621 VDTEKGRLDITHYERISREQVKEIERIANEIVLSKMPVNSTFMDRNDAEQKYGFTIYQGG 680

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               D +R++ +E  D        CGGTH S+T EI  + ++    I+ G+ R+E  TG 
Sbjct: 681 VVPGDTLRIIEIEGTD-----VEACGGTHCSNTSEIGYIKVLKTERIQDGVERLEYSTGM 735

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-----VE 784
            + S +   ++ L   A  L +    +   V+  +EE+++ +    + + ++        
Sbjct: 736 GSVSEIAVLEDTLIDSAEILGIPNDQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYEL 795

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                K  +   +   +S     EL S+ D L   + + +I+L+  +      +L    E
Sbjct: 796 ADKFEKYGNYEVLVEQVSGT-PNELMSIADNL--AVGNKLIVLMNEND----YLLCKRGE 848

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++    +  +L R        G GGG+ ++AQ  G      +Q    +   L K
Sbjct: 849 NV--ELSMKELIRNI------GKGGGKDNLAQ--GKYSENKEQITEKIIQILNK 892


>gi|1136561|gb|AAA84420.1| AlaRS A [Caenorhabditis elegans]
          Length = 272

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 118/274 (43%), Positives = 165/274 (60%), Gaps = 18/274 (6%)

Query: 1   MS--NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M     S +R+TF+ FF +K  H  + SSS+IP +DPTL+F N+GM  FK +F G   P 
Sbjct: 1   MKHLTASEVRSTFINFFREKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPN 60

Query: 58  Y-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWD 112
                 +     QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG YFK+  I  AW+
Sbjct: 61  SDLAKLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWE 120

Query: 113 LLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           LLT  + +   RLY++V+  DE        EA  +W+   G+  ++I+     DNFW M 
Sbjct: 121 LLTTVYGIPAERLYVSVFGGDEANGVPADSEARDIWRS-VGVPDERILNFGMKDNFWEMG 179

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           + GPCGPCSEI +D+           + +    +EIWNLVF+QF ++       LP   I
Sbjct: 180 DVGPCGPCSEIHYDRIGNRD-ASHLVNADDPMVVEIWNLVFIQFNREEGGVLKPLPAKHI 238

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           D G+GLER+  V+Q+KT+NYD D+F+ + +A  Q
Sbjct: 239 DCGLGLERLIAVMQDKTSNYDTDIFQPIFEAIHQ 272


>gi|288931271|ref|YP_003435331.1| alanyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288893519|gb|ADC65056.1| alanyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 901

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 221/964 (22%), Positives = 368/964 (38%), Gaps = 193/964 (20%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
            N+  +R  +L FF+K GHE +    ++      +  T + +  F+   T G   P    
Sbjct: 60  MNIDEMREYYLSFFEKRGHERIERYPVVARWRDDIYLTIASIADFQPFVTSGLVPPPANP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +T  Q C+R      DLD++GRT RH T FEM+ + +F       Y+K   +    +LL 
Sbjct: 120 LTISQPCIRME----DLDSIGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                        G+  ++I+     +  W+    G  GPC E 
Sbjct: 175 --------------------------NELGVRKEEIV---YKEEPWAGG--GNAGPCLE- 202

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGM 228
                  I GG           +E+  LVFM  E     +          +    +DTG 
Sbjct: 203 ------AIVGG-----------LELATLVFMNLELDPNGDIEIKGERYRRMDNYIVDTGY 245

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------ 270
           GLER     Q     YD  +F  ++    + + +++   +                    
Sbjct: 246 GLERFVWASQGTPTVYDA-IFPEVVDKIVENSSIEFSRKDEDMKGLLAESSKLAGVMSSL 304

Query: 271 -------------------------------NHRVIVDHLRSSSFLIADGILPANEGRGY 299
                                              + DH R+  F++ DG++P+N G GY
Sbjct: 305 RGEELLKLRKSIADKFGMSVEVLDRIISPMEKAYALADHTRAILFMLGDGLVPSNAGAGY 364

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           + R ++RR++  A  +G+T  L   L+      + +   E+      I+E L  E E++ 
Sbjct: 365 LARLMIRRSLRLADDIGFTLTL-FDLVELHRKILKAFEFEVE--LDTIQEILELETEKYK 421

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +T++RG  +++  +    K      +   + YD+HG+P +I+  I    G    ++    
Sbjct: 422 RTIERGKSMVERTVKRKKKVTK---EDLIEFYDSHGIPPEIVISIAEKEGAEVEEVEDLY 478

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             L  + S+A                  LK  Y  T+ + Y+                  
Sbjct: 479 AELASRHSKAEKKEKPKI----------LKNDYPETEKLYYNS----------------- 511

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  +                 V+ ++T FY E+GGQ  D G  I    
Sbjct: 512 ----KLLEFEAEVIGVEGD-------------LVILNKTAFYPESGGQDNDVGYLIAKDK 554

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++++ DV ++   +         G LR    +   +D + R +   +H+ATHLL + L  
Sbjct: 555 KVRVVDVFEEDGVVVHK----VDGELRVGDKVKGLVDEETRFRHMRHHTATHLLLNVLQK 610

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q G+    D  R DVTH K ++  E++ IE  VN  I  N PV    M R +A
Sbjct: 611 KLGKHVWQAGARKEKDKARLDVTHYKRLSDEEIREIEREVNREIMANKPVRWTFMERNEA 670

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                  L          +  V+  D        CGGTHV STGEI +  I+   SI+ G
Sbjct: 671 EKKFGFRLYQGGVPPGKVIRVVQAGDD----VQACGGTHVESTGEIGMFKILKVESIQDG 726

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-------EEYRKLQL 772
           + R E   G+ A  H+  Q+  LK  +S L+V    +   VE  +       +E  KL+ 
Sbjct: 727 VIRFEYAAGEAALEHVAKQESLLKEASSILRVEPSILPKTVERFFEEWKEQKKEIEKLKE 786

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             AK K +   E+    +   +  +   I E    ++K++    QK  + G + ++   K
Sbjct: 787 EIAKLKAERIAENY--EEFDGIKIVVERIDE----DIKTLAKLGQKLAEMGFVGVLLSGK 840

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           E        VT    ++ +A +L R   K++  G GGGR  +AQ  G    + D+ +  +
Sbjct: 841 EGVRL----VTFSGHEKVDARELMREIGKLVK-GSGGGRRDLAQGAGQIMPEKDEVVNLL 895

Query: 893 ASFL 896
              L
Sbjct: 896 FEVL 899


>gi|291060374|gb|ADD73109.1| alanyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 649

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 154/470 (32%), Positives = 249/470 (52%), Gaps = 22/470 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
              +R+ +L FF +  H ++   SL+P +DPT++FT +GM P      G+  P    +  
Sbjct: 51  ADQLRSRYLAFFSQKAHVVISGKSLVPEHDPTVLFTTAGMHPLVPYLMGEPHPAGTRLVN 110

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDLD 121
            QKC+R G    D+D VG  N H TFFEMLGN+S G YFKE AI  +++ LT      + 
Sbjct: 111 AQKCLRTG----DIDAVG-DNSHLTFFEMLGNWSLGDYFKEEAIAFSFEFLTGAPWLGIS 165

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSE 174
             RL +TV+  DE      E+  +W+++ G++   I  +   DN+W    ETGPCGP +E
Sbjct: 166 PDRLSVTVFAGDEAVARDEESAAIWERL-GIARTHIHFLPRADNWWGPTGETGPCGPDTE 224

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IFFD G               +Y+EIWN VFMQ+ +        L +  +DTGMG+ER  
Sbjct: 225 IFFDTGVPPCSVSCRPGCSCGKYVEIWNDVFMQYRKDADGRYRPLERYCVDTGMGIERTV 284

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD--GI 290
            VLQ K + YD ++F  L++   Q+ G +Y     + V+ R++ DH+R+++F++ D   +
Sbjct: 285 AVLQGKRSVYDTEIFTPLLERIGQLCGKRYGCQGAHDVSMRIVCDHIRAATFILGDPVPV 344

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G GYVLRRI+RR++ + R LG     +  L   +  +  + YPEL +    I + 
Sbjct: 345 RPSNVGAGYVLRRIIRRSVRHGRKLGIDGEFLSSLARVVIGQYAAVYPELEEKATCIAQE 404

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           L +E+ +F   L +G    + ++    +  +  + G VAF+LYDT+G PL++ +++    
Sbjct: 405 LANEERKFLDALRKGEAEYERMIPKFLQGTEREIPGSVAFRLYDTYGFPLELTEELARES 464

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           GL  +D   F+ A +  ++ +R  +  +  G            + AT  +
Sbjct: 465 GLR-VDRAGFDTAFQAHQACSRIGAQRVFKGGLADHSAETTAYHTATHLL 513



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 5/158 (3%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +       +  + +  H+ATHLLH AL  +LG+HV Q GS IT + LRFD +H +P++
Sbjct: 489 QRVFKGGLADHSAETTAYHTATHLLHQALRVVLGTHVQQKGSNITAERLRFDFSHPRPMS 548

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + E   +E  VN+ I  +LPV   +M+ EDA+ SGA AL G KY   V+V S+     G 
Sbjct: 549 AQEKVQVEQLVNEQIRADLPVCCEVMSLEDAMNSGAVALFGEKYESTVKVYSI-----GT 603

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            S  +CGG HV+ TG++    I  E S  AG+RRI AI
Sbjct: 604 FSREVCGGPHVARTGQLGRFSIQKEQSSAAGVRRIRAI 641


>gi|15640001|ref|NP_219454.1| alanyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026240|ref|YP_001934012.1| alanyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094390|sp|O83980|SYA_TREPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3323345|gb|AAC65968.1| alanyl-tRNA synthetase (alaS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018815|gb|ACD71433.1| alanyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 605

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 154/470 (32%), Positives = 249/470 (52%), Gaps = 22/470 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
              +R+ +L FF +  H ++   SL+P +DPT++FT +GM P      G+  P    +  
Sbjct: 7   ADQLRSRYLAFFSQKAHVVISGKSLVPEHDPTVLFTTAGMHPLVPYLMGEPHPAGTRLVN 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDLD 121
            QKC+R G    D+D VG  N H TFFEMLGN+S G YFKE AI  +++ LT      + 
Sbjct: 67  AQKCLRTG----DIDAVG-DNSHLTFFEMLGNWSLGDYFKEEAIAFSFEFLTGAPWLGIS 121

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSE 174
             RL +TV+  DE      E+  +W+++ G++   I  +   DN+W    ETGPCGP +E
Sbjct: 122 PDRLSVTVFAGDEAVARDEESAAIWERL-GIARTHIHFLPRADNWWGPTGETGPCGPDTE 180

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IFFD G               +Y+EIWN VFMQ+ +        L +  +DTGMG+ER  
Sbjct: 181 IFFDTGVPPCSVSCRPGCSCGKYVEIWNDVFMQYRKDADGRYRPLERYCVDTGMGIERTV 240

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD--GI 290
            VLQ K + YD ++F  L++   Q+ G +Y     + V+ R++ DH+R+++F++ D   +
Sbjct: 241 AVLQGKRSVYDTEIFTPLLERIGQLCGKRYGCQGAHDVSMRIVCDHIRAATFILGDPVPV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G GYVLRRI+RR++ + R LG     +  L   +  +  + YPEL +    I + 
Sbjct: 301 RPSNVGAGYVLRRIIRRSVRHGRKLGIDGEFLSSLARVVIGQYAAVYPELEEKATCIAQE 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           L +E+ +F   L +G    + ++    +  +  + G VAF+LYDT+G PL++ +++    
Sbjct: 361 LANEERKFLDALRKGEAEYERMIPKFLQGTEREIPGSVAFRLYDTYGFPLELTEELARES 420

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           GL  +D   F+ A +  ++ +R  +  +  G            + AT  +
Sbjct: 421 GLR-VDRAGFDTAFQAHQACSRIGAQRVFKGGLADHSAETTAYHTATHLL 469



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 5/158 (3%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +       +  + +  H+ATHLLH AL  +LG+HV Q GS IT + LRFD +H +P++
Sbjct: 445 QRVFKGGLADHSAETTAYHTATHLLHQALRVVLGTHVQQKGSNITAERLRFDFSHPRPMS 504

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + E   +E  VN+ I  +LPV   +M+ EDA+ SGA AL G KY   V+V S+     G 
Sbjct: 505 AQEKVQVEQLVNEQIRADLPVCCEVMSLEDAMNSGAVALFGEKYESTVKVYSI-----GT 559

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            S  +CGG HV+ TG++    I  E S  AG+RRI AI
Sbjct: 560 FSREVCGGPHVARTGQLGRFSIQKEQSSAAGVRRIRAI 597


>gi|314981337|gb|EFT25431.1| alanine--tRNA ligase [Propionibacterium acnes HL110PA3]
          Length = 428

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/418 (38%), Positives = 240/418 (57%), Gaps = 31/418 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRTL----DIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKM- 222
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +    +         P   
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 223 -SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHL 279
            +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHG 395
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYG 411


>gi|242011581|ref|XP_002426527.1| alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212510653|gb|EEB13789.1| alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 809

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 187/788 (23%), Positives = 326/788 (41%), Gaps = 67/788 (8%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK++F G  +P    V   QKC+R GGKHNDL  VG    HH+FFEMLGN+SFG YF
Sbjct: 1   MNQFKDVFLGLTRPAATKVANYQKCIRVGGKHNDLSQVGNDGSHHSFFEMLGNWSFGDYF 60

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRI 154
           K+ A +++W+LLT  ++L   RLY+T +  DE        E  ++W++  G+  + I+  
Sbjct: 61  KKEACKMSWNLLTDVYNLQPERLYVTYFGGDESLGLGPDLEVREIWRE-IGIKENHILPF 119

Query: 155 TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
            + DNFW M   GPCG C+EI +D            + + +   E+WN+VFMQ+ +    
Sbjct: 120 GSKDNFWEMGTIGPCGVCTEIHYDHVPGRKDVGNFVNADRDDVTELWNIVFMQYNRNENN 179

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-------MKYEGN 267
           E   L K  +DTGMG ER+   LQ KT+NYD DLF  L +   + +             +
Sbjct: 180 ELVKLGKHFVDTGMGFERLVATLQGKTSNYDTDLFLPLFEGIRKYSKHGGYTGTYDVRDS 239

Query: 268 NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
              ++R+I DH R  S  ++DG+LP ++ +   +R I+R+A+  ++     +  ++  + 
Sbjct: 240 IDSSYRIIADHGRMISVALSDGMLPNHQNK---VRTIIRKALRVSKKSFNCDSGLLKNVT 296

Query: 328 ALC-TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS------------ 374
                 +  AYP++ +    I   +  E++ F +  +  L       +            
Sbjct: 297 NYVAETLEDAYPQIGKHLSKIHFIIEQEEKIFKEQQNVALKKFKKYKNIFPKIKNEDIED 356

Query: 375 --------HLGKDEILNGD------VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
                    L K  I +G         + LYDT+GL  +  + +    GL   +    N 
Sbjct: 357 NPNLISGLELFKKYIKDGRKKLLDEDVWILYDTYGLSPENTKKLSQILGLDFDESSYENY 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
              ++++  +     +     E     + E      F   D +  +       +      
Sbjct: 417 ENNKKKNEMKKLEKKIYDEKHEG---DVIESKTQQNFNMADDVELTTKDYFKYEYRIDGS 473

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAV----SGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
              L     + V AI+  G+  ++      +G ++ +V D+T  ++    +  D G  I 
Sbjct: 474 DKYLFLNQPTSVLAIIINGKYHDKISINDFNGNEIGLVLDKTQLFSAEKNRNSDLGYLIF 533

Query: 537 DGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVL----TIDYQNRRQLSINHSATH 591
           D   +        K     VH+    +     EM +       ++   R  L  NH+  +
Sbjct: 534 DNNDILFDVKKVCKFGNGVVHYGSFTKYPRNAEMGIHDTGILILNENVRLNLMKNHTCLN 593

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVV 650
           LL   +         +N S + PD    D+   K      ++  +E+ V  +I  ++ V 
Sbjct: 594 LLKGGIREKFPLTCEKN-SMVNPDSFTLDLMVYKFKFALNDILDLENFVRKMIKGDVSVN 652

Query: 651 TRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            + +N                 +     +  +E  +G      +C G HV  T  +    
Sbjct: 653 RKPLNHLQFYYLWENIYFKPGISLIESEIPLIEINNGFTLIREVCNGAHVLRTSHLEDFT 712

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-----NVVGRVEEIW 764
           I+    I  G+ R+E +TG  A   +   D K+      LK         + + ++ +I 
Sbjct: 713 ILKLKKISYGVHRMEGLTGIHA-KQIRENDLKMDKKWKILKGQMEKDIVSDNLKKITDIM 771

Query: 765 EEYRKLQL 772
           +E   ++L
Sbjct: 772 DEINSMEL 779


>gi|296109504|ref|YP_003616453.1| alanyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295434318|gb|ADG13489.1| alanyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 873

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 223/954 (23%), Positives = 396/954 (41%), Gaps = 199/954 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           +   +   F+ FF+K+GHE +  + ++       ++ T + +  F+   T G  KP    
Sbjct: 54  SYKEMVEEFINFFKKHGHEPIKRAPVVAKRWRDDILLTIASIAVFQPWVTKGLVKPKANP 113

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+ +  ++L ++   
Sbjct: 114 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGGHHAFNSEEEFKYWIDETVELCFNFF- 168

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   +D++                              IT  +++W     G  GPC E+
Sbjct: 169 KNLGIDEK-----------------------------SITFIESWWEGG--GNAGPCFEV 197

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+    E   +P   +DTG G+ER   
Sbjct: 198 L------------------THGVELATLVFMQYEKVGN-EYKEIPLKIVDTGYGIERFVW 238

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-------------------------- 269
           V   +   YD  LFK +I+  ++  G++     I                          
Sbjct: 239 VSTGEPTIYDA-LFKDIIEKLKKEAGIEEIDKEILAKITELSGLMDVKDVGDLRKLREVV 297

Query: 270 ------------------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                              N   +VDH R+ +FL+ DG++P+N   GY+LR ++R+++ +
Sbjct: 298 AKRVGLDVEELERILEPYENLYALVDHTRAITFLLGDGVVPSNVKEGYLLRMLIRKSLRH 357

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
                     +  ++     E+ + YPEL+  K  +E+ L  E ER+ +TL RG  ++  
Sbjct: 358 LNK-LNLNLSLFDVVELHLKELKALYPELLDMKDYMEKVLALETERYKETLKRGEGIIKR 416

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +L      ++   +   +LYD+HG+P+D++++I            +F   + E+    R 
Sbjct: 417 LLKKKKSLDL---EDIIELYDSHGIPVDLIEEIAK-----VKVPDNFYTIVAERHENVRE 468

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                                  T+ + Y+ L+                         + 
Sbjct: 469 GEKK-----------EELSLDIETKPLYYENLK----------------------EFKAK 495

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  I+                V+ D+T FY E GGQ  DTG  I D  + ++ DVQK  +
Sbjct: 496 VVKIIDN-------------FVILDRTAFYPEGGGQKADTGYLIKDNKKYRVLDVQKFGK 542

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I      VE    R    +   ID+  R  L  +H+ATH++  A   +LG HV+Q GS 
Sbjct: 543 AIAHKLESVEGL--REGDEVKGVIDWDRRESLMRHHTATHIIGSACRKVLGKHVNQAGSD 600

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
           +  D  R D+TH K ++  E+K IE   N+I+ +N  +  + M+R +A      ++    
Sbjct: 601 VDIDKARLDITHYKRLSREEIKEIERIANEIVVRNYNIEAKFMDRNEAEEKYGFSIYQGG 660

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               DR+R+V ++  D        CGGTH S TG++ L+ I+    ++ G+ R+    G 
Sbjct: 661 VVPGDRIRIVKIDDID-----VQACGGTHCSKTGDVGLIKILKTERVQDGVERLIYSAGL 715

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---IHAKRKLQLNVEDL 786
           +A   +   ++ L S++  LK    NVV  +++   E+++L+       K+  +L   +L
Sbjct: 716 KALEKVQELEDNLLSVSETLKCQPENVVKVLDKFVNEWKELRKRVEELEKKVGELKKYEL 775

Query: 787 --SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                K+ DV  +   +   + KEL ++ D L   + + +++L   +      V+    E
Sbjct: 776 INKFEKVGDVELLVEKVEG-NPKELLNLADHL--ALGNRLVILTNGN-----FVICKRGE 827

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
               + +  +L  L       G GGGR  +AQ       K+D+++  +   +K+
Sbjct: 828 ---VKLDVRELINLF------GRGGGREDLAQG------KSDKSVEEIKKIVKE 866


>gi|284161204|ref|YP_003399827.1| alanyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
 gi|284011201|gb|ADB57154.1| alanyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
          Length = 902

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 204/919 (22%), Positives = 354/919 (38%), Gaps = 187/919 (20%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           +  +R  +L FF++ GH  +    ++      +  T + +  F+   T G   P    +T
Sbjct: 64  LKEMREYYLRFFEERGHTRIDRYPVVARWRDDIYLTIASIADFQPFVTSGVAPPPANPLT 123

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKE 117
             Q C+R     +DLD++G+T RH + FEM+ + +F       Y+K   +Q   +LL   
Sbjct: 124 ISQPCIRM----DDLDSIGKTGRHLSLFEMMAHHAFNYPNQHIYWKNETVQYCTELL--- 176

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
                                   +  G+  + I+     +  W+    G  GPC E   
Sbjct: 177 ------------------------QSLGVKLEDIV---YKEEPWAGG--GNAGPCLE--- 204

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMGL 230
                I GG           IE+  LVFM   +    +          +    +DTG GL
Sbjct: 205 ----AIVGG-----------IELATLVFMNLVEDPNGDIVVKGSRYRKMENYIVDTGYGL 249

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------- 271
           ER     +     YD  +F  +++   + + ++     IV                    
Sbjct: 250 ERFVWASKGTPTVYDA-VFPEVVEFILKNSDVEKPDERIVAESSKLAGIMGELSGEKLLE 308

Query: 272 -------------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
                                       + DH R+  F++ DG++P+N G GY+ R ++R
Sbjct: 309 FRKNLSNRLGVSLEELERVLIPMEMVYALADHTRAILFMLGDGLVPSNAGAGYLARLMIR 368

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           R++  A  +G++  +   L+      +     E       I+E L  E++++  T+ RG+
Sbjct: 369 RSLRLAEEIGFSLSI-FDLVELHRKILKEF--EFEVPLETIQEMLEIEEKKYKLTIQRGI 425

Query: 367 VLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            L++     + +   ++ +   + YD+HG+P +I+  I   RG+       F   L  + 
Sbjct: 426 SLVER---KILRKGRVDKEDLIEFYDSHGIPPEIVVRIAKERGVEVEMPKDFYAELASRH 482

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
            +A                      Y  T+ + YD  +  +F                  
Sbjct: 483 MKAEKKVEEKKLKG----------SYPKTEKLYYDNPKLFEF------------------ 514

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
             ++ V  +            G K  V+ D+T FY E+GGQ  DTG    DG R+++ DV
Sbjct: 515 --TAKVIGV-----------EGDK--VILDRTAFYPESGGQASDTGYFEVDGKRIKVLDV 559

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q++   ++        G L+    +   ID   R +   +HSATHLL ++L  + G+HV 
Sbjct: 560 QEEDGVVYHV----VEGELKVGDVVRGVIDADRRLRHMRHHSATHLLLYSLRKLYGNHVW 615

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q G+       R DVTH K  +  E+  IE  VN  I  N PV    M+R +A       
Sbjct: 616 QAGARKERGKARLDVTHYKKPSDEEIAEIEKLVNAEIMANKPVTWEWMDRIEAERRYGFR 675

Query: 667 LLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           L          +RVV V            CGGTH +STGEI    IV   SI+ G+ R E
Sbjct: 676 LYQGGVPPGRVIRVVRVGD------DVQACGGTHCNSTGEIGFFKIVRVESIQDGVIRFE 729

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
              G+ A  ++   +  LK  ++ L+V    +   VE  +EE+++      + K ++   
Sbjct: 730 FTAGESALEYVQEIERILKDASTILRVEPSKLPKTVERFFEEWKERGKKIERLKREIAKV 789

Query: 785 DLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
                     +   +  +  ++ +    E+  + + L K    G++M    + E K  V+
Sbjct: 790 KAEKLLENAEEFDSIKVVCDVM-DASMDEMVKIAEELVKAKAVGVLM----NTEGKVKVV 844

Query: 840 IVVTEDLLDRFNAVDLARL 858
                D     +A +L + 
Sbjct: 845 TFSGID----VDARELMKE 859


>gi|258616275|ref|ZP_05714045.1| alanyl-tRNA synthetase [Enterococcus faecium DO]
          Length = 632

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 234/665 (35%), Positives = 357/665 (53%), Gaps = 50/665 (7%)

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQF 208
           +   DNFW +   GPCGP +EIF+D+GE                E ERY+EIWNLVF +F
Sbjct: 1   MDVEDNFWDIG-AGPCGPDTEIFYDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEF 59

Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--E 265
             +       LP  +IDTGMGLERM +++Q+ + N++ DLF  +I A E++   +KY   
Sbjct: 60  NHKPDNTFEPLPHKNIDTGMGLERMVSIVQDASTNFETDLFMPIIHAVEKLSKQVKYGEN 119

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
               ++++VI DH+R+ SF I DG LP+NEGRGYVLRR++RRA+ + + LG  +  +  L
Sbjct: 120 PVTDISYKVIADHIRALSFAIGDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRL 179

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILN 383
           +P +   M S YPE++Q K  IE+ +R+E+ERF +T++ GL +L+ V+  +  +    L 
Sbjct: 180 VPVVGEIMVSYYPEVLQQKEFIEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLA 239

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G   FKLYDT+G P+++ +++    GL  +D   F + ++ QR RAR+      S   + 
Sbjct: 240 GKDIFKLYDTYGFPVELTEEVAEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQS 298

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
               L +    ++FIGY                             S +  IV+   ++ 
Sbjct: 299 AL--LTDIKVESKFIGYTEQESD-----------------------SQLLVIVKGESLLN 333

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVER 562
           E   G+  +++FDQTPFYAE GGQ+ D G  + +   +       +KA      H +  +
Sbjct: 334 EVAEGE-AQMIFDQTPFYAEMGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEVK 392

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             +    +  L ID   R ++  NH+ATHLLH AL  +LG H +Q GS + P  LRFD T
Sbjct: 393 APMSEGQTYHLLIDQSMRNRIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFT 452

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
           H   ITS EL  +E  VN+ I + +PV T   + + A   GA AL G KY   VRVV++ 
Sbjct: 453 HFGQITSDELAEMERIVNEKIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNIG 512

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
                  S  LCGGTHV++T  I +  IVSES I AG+RRIEA+T + A   L  ++++L
Sbjct: 513 G-----WSIELCGGTHVANTENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQL 567

Query: 743 KSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNF 796
           K +A+ +K  Q   VV + E++ ++ R+LQ  + +   +L  +           I     
Sbjct: 568 KQVATIVKSPQLKEVVSKAEQLQQQVRELQKENEQLASKLANQQAGDVFKDPETINGKTI 627

Query: 797 MSHII 801
           ++  +
Sbjct: 628 IAAQV 632


>gi|295698289|ref|YP_003602944.1| alanyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
 gi|291157382|gb|ADD79827.1| alanyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
          Length = 426

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 166/422 (39%), Positives = 241/422 (57%), Gaps = 16/422 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPT-LMFTNSGMVPFK-NIFTGQEKPVYQA 60
           N   IR  FL FFQ+  H +LP S L+P    + L+FTN+GM  F+ N F  ++   +  
Sbjct: 5   NTHEIRKIFLRFFQEKDHLILPGSKLVPSERNSSLLFTNAGMNQFRENFFKKEKLSSFTR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
           V T Q C+RAGGK +DL+NVG TN HHT FEMLGNFSFG YF+  +I+ AW+LLT  K F
Sbjct: 65  VATSQYCIRAGGKFSDLENVGYTNSHHTLFEMLGNFSFGDYFRSESIEYAWELLTSKKWF 124

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            + + ++ ITV+  DEE++ +W    G+S +KI +I          +NFW M +TGPCGP
Sbjct: 125 GISKNKILITVHHLDEESYDIWANQIGISKNKIFKIEDKENHKYHSENFWKMGKTGPCGP 184

Query: 172 CSEIFF--DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            +EIF+  D+ +   G L       + +IEIWN+VF+QF   +  +   L   SIDTGMG
Sbjct: 185 STEIFYNFDEKDDFDGSLESFERRKKNFIEIWNIVFIQFNLNSSNKLEPLRYKSIDTGMG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289
           LER+A+V+Q   +NY ID FK LIQ+                 R++ DH+RS   +I + 
Sbjct: 245 LERIASVIQNVKSNYQIDTFKKLIQSIRS--QFSAICFKDYTLRILSDHIRSIVLIINEN 302

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           I P+N GRGYV+R+I+RRA+    L G  EP +  ++          +  +   + +IE 
Sbjct: 303 IKPSNVGRGYVIRKIIRRAVRKGYLDGIREPFLYKIVSCFTRSNEKDFKYVKINQKIIEH 362

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           T++ E+++F K +  G+  L   L +     I +    F L+DT+GLP+DI   I    G
Sbjct: 363 TIKKEEKQFLKIILVGIKFLKEKLKNFNYRFI-SEKDIFLLHDTYGLPIDIAMKICKEHG 421

Query: 410 LA 411
            +
Sbjct: 422 TS 423


>gi|167957608|ref|ZP_02544682.1| alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7c]
          Length = 625

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/499 (31%), Positives = 252/499 (50%), Gaps = 52/499 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  +LEF Q+NGH ++  + LI  NDPT +FT SGM P      GQ+ P    +
Sbjct: 1   MNAQEIRQKYLEFCQRNGHAIIERAPLILHNDPTTLFTGSGMQPLLPYLLGQDHPQGTKL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q C+RA     D+++VG  NRH TFFEMLGN+S G YFK + I+  ++ LT+   LD
Sbjct: 61  ADSQTCLRA----QDIEDVG-DNRHTTFFEMLGNWSMGEYFKRQQIEWFFEFLTEIVGLD 115

Query: 122 QRRLYITVY--------DEDEEAFKLWKKI---------------------SGLSADKII 152
             ++Y++ +          D+EA ++W+++                      G+   +I 
Sbjct: 116 PHKIYVSCFIGDDKNNIPRDDEAAQIWQEVFAKKGIKAKIVELDSAENGDKLGMQGGRIF 175

Query: 153 RITTNDNFWSMA------ETG-PCGPCSEIFFDQGECIPG---GLPGSSEEGERYIEIWN 202
                +N+WS          G PCGP SE+F+D GE       G    + +  R++EI N
Sbjct: 176 FYNDKENWWSRGGGIDSTPIGDPCGPDSEVFYDFGEQHHDASFGQAHPASDSGRFMEIGN 235

Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262
            VFMQ+ + +      L + ++D G GLER+A    +  + + I L + +I   E ++G 
Sbjct: 236 QVFMQYRRLDDGSFEPLKRKNVDFGGGLERIAAAAIDSPDVFKISLLRPIIDKLESLSGK 295

Query: 263 KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
            Y   +  + RVI DHLR+++FL  DG +P+N+ +GYV+RR++RRA+ Y+  LG  +  +
Sbjct: 296 DY-DTHTGSMRVIADHLRAATFLAVDGCVPSNKEQGYVMRRLLRRAIRYSFDLGIEQNFL 354

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
             ++P +     + +PE+ + +  I   L  E++ F +TL +GL  +   +        L
Sbjct: 355 EEVVPVIADLYEADFPEVKENREQIIAVLVKEEKAFRQTLRKGLRQMQHYIDDG-----L 409

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAHSLGLGSGT 440
            G+  F LYDT G P+++  +    +G+   D     F+  + EQR R++    G  SG 
Sbjct: 410 TGEELFTLYDTFGFPVELSTEEAYKQGIKLSDNWRAEFDARMAEQRQRSKTARKGQFSGG 469

Query: 441 TEKIWFSLKEKYGATQFIG 459
            E       + + AT  +G
Sbjct: 470 LEGHDPIHLKYHTATHLLG 488



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 60/149 (40%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 583 LSINHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
               H+ATHLL  AL  +L    + Q+GS IT + LRFD  H K +TS E +++ED VN 
Sbjct: 477 HLKYHTATHLLGAALRKVLKVPDLQQHGSNITSERLRFDFNHDK-LTSEEKQAVEDQVNA 535

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +LPV   +    +A+  GA    G +Y D V+V S+   D  V S  +CGG HV  
Sbjct: 536 WIDADLPVSFAVYPTNEALKMGAIGAFGERYGDEVKVYSIGEGD-NVVSFEVCGGPHVEH 594

Query: 702 TGEI----MLLYIVSESSIRAGIRRIEAI 726
           TG +        I  E S  AGIRRI+A+
Sbjct: 595 TGTLAEGGKRFKINKEESSSAGIRRIKAV 623


>gi|224534195|ref|ZP_03674773.1| alanine--tRNA ligase [Borrelia spielmanii A14S]
 gi|224514297|gb|EEF84613.1| alanine--tRNA ligase [Borrelia spielmanii A14S]
          Length = 594

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 154/470 (32%), Positives = 257/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLDKLRKKYIDFFKSKKHFQIIGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+  D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSFDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD-- 288
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFIPIIKRIEFISGKTYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           GI P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T   S Y EL + K  I+
Sbjct: 295 GIFPSNVGQGYVLRRLIRRSVRYAKKLGIKSYFLADLVDSVETIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSIEEEKFFKTLFQGEQEFIKITRNLS-SKTIPGDIAFKLYDTYGFPYELTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID + F++  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NIDKLGFDEYFKKHQKASKKGGDKIFKGGLADYTYETTKLHTATHLL 462



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 76/268 (28%), Positives = 112/268 (41%), Gaps = 21/268 (7%)

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y+ L   K   +    + ++               I +   +  + + G     ++D   
Sbjct: 343 YNELTEKKDFIKKELSIEEEKFFKTLFQGEQEFIKITRN--LSSKTIPGDIAFKLYDTYG 400

Query: 520 F-YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           F Y        + G  I      +     +KA               +    +       
Sbjct: 401 FPYELTEELAFEYGFNIDKLGFDEYFKKHQKA-------------SKKGGDKIFKGGLAD 447

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
              + +  H+ATHLLH AL  +LG HV Q GS IT + LRFD  HSK +T  E+K +E+ 
Sbjct: 448 YTYETTKLHTATHLLHKALQLVLGDHVKQKGSNITAERLRFDFVHSKKMTDDEIKRVEEI 507

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I  +L V   IM   +A   GA AL G KY++ V V  ++       S  +CGG H
Sbjct: 508 VNLQIKNSLSVKKSIMELSEAREKGAMALFGEKYDNLVSVYEIDG-----FSLEVCGGPH 562

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V +T E+    I  E S  +GIRRI+AI
Sbjct: 563 VENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|150400126|ref|YP_001323893.1| alanyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|189082114|sp|A6US09|SYA_METVS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150012829|gb|ABR55281.1| alanyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 892

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 210/954 (22%), Positives = 377/954 (39%), Gaps = 179/954 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + +   F  FF + GH  +  S +I       ++ T + +  F+   T G  KPV   
Sbjct: 60  TYNEMVKEFTNFFDERGHSPVKRSPVIAKRWRDDILLTIASIAVFQPWVTNGLVKPVKNP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++L ++L+ 
Sbjct: 120 LVITQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDEYKYWTDKTVELCFELM- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           ++  +D                                IT  +++W     G  GPC E+
Sbjct: 175 QKLGIDG-----------------------------HTITFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+++        +P   +DTG G+ER A 
Sbjct: 204 I------------------THGVELATLVFMQYKKVGN-NYEEIPLKIVDTGYGIERFAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------------ 271
             Q     Y+  LF  +I+  ++   +      I+                         
Sbjct: 245 ASQGTPTVYEA-LFSDIIEKLKKNANIPIVDEKIMAESATLAGLMDIENVGDLKALRQKV 303

Query: 272 --------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y
Sbjct: 304 AEKIGMDVNELDRLISPLEYIYAISDHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRY 363

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              +G +  +   ++      M   YPELI  K  I + L SE++++ +T+++G  +++ 
Sbjct: 364 MEKVGISYSIK-EIILMQLESMKEVYPELIGMKDYIMDVLDSEEKKYIQTVNKGRGIVER 422

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +         +  +    LYD++GLP +I++DI+          IS +         A  
Sbjct: 423 MTK---LKSEITLNDLINLYDSNGLPPEIVKDIIDEINKTSKTKISIHVPDNFYTIVAER 479

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           H                             +L+      +  K         + +   + 
Sbjct: 480 HEEEKAEEVA--------------------ILKHELPELDLPKTELLFFKNTMQSEFEAK 519

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  IV +              ++ D+T FYAE GGQ  D G   G  +         + +
Sbjct: 520 VLKIVDK-------------YIILDRTVFYAEGGGQKYDIGQISGVDVV------DVQKK 560

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
              V H +++    +    +   ++++NR +L  NH+ATH+++ AL  +LG HV Q GS 
Sbjct: 561 NGIVFHKVLDISKFKEGNLVKGELNFENRLKLMRNHTATHVINAALKQVLGKHVWQTGSN 620

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
           +  +  R DVTH + I+  E+K IE   N+I+    PV  + M+R DA       +    
Sbjct: 621 VDTEKGRLDVTHYERISRKEIKEIEKIANEIVLLGKPVTCKFMDRNDAEQEYGFKIYQGG 680

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               D +R+V ++  D        CGGTHV++T EI  + ++    I+ G+ R+E  TG 
Sbjct: 681 VVPGDTLRIVEIDGID-----VEACGGTHVTNTSEIGYIKVLKTERIQDGVERLEYSTGM 735

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---IHAKRKLQLNVEDL 786
            +   +   ++ L   A  L V   N+    +  +EE+++ +       K+  +L   +L
Sbjct: 736 GSIFEIAALEDILLDSAEVLGVPIENLPKTAKRFFEEWKEQKKVIEELQKKVGELLKYEL 795

Query: 787 --SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                K+ ++  +   +S     EL ++ D L    +  I++L+  +      +L    E
Sbjct: 796 LEKFEKVGNLEILVEKVSGTS-NELMAIADNLATNGK--IVILMNDTD----YILCKKGE 848

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++    +  +L +        G GGG+ ++AQ  G      +Q        LK+
Sbjct: 849 NV--EISMKELIQKI------GKGGGKENLAQ--GKYSTSKEQIREKAFELLKQ 892


>gi|15897276|ref|NP_341881.1| alanyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|284174525|ref|ZP_06388494.1| alanyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|14286171|sp|P96041|SYA_SULSO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13813483|gb|AAK40671.1| Alanyl-tRNA synthetase (alaS) [Sulfolobus solfataricus P2]
 gi|261601946|gb|ACX91549.1| alanyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
          Length = 900

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 186/869 (21%), Positives = 340/869 (39%), Gaps = 156/869 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            V   R  FL FF+K GH  +P   ++      L  T + +V F+  + +G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRIPPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A +  T
Sbjct: 121 VVSQPSIRLE----DIDNVGVTFGRHLTTFEMAAHHAFNYPDRYVYWKDETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE                           G+  +    +   +++W     G  GPC E+
Sbjct: 177 KEL--------------------------GIPEE---ELNFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +  +   L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGDYIPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDI--------------------------------------DLFKHLIQASE 257
           V Q+  + +                                        D  K   Q   
Sbjct: 248 VTQKTPSAFHAIYGNLVYKFFDKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 258 QVTGMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           +  G+  +       R      I+DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKNVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLL-KSDVRLYELVKEQIGFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +   
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGVPPDLLEEELKKKRVKFELPRNFYALVAKRHQTSTIK 482

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           ++        K           T+ + Y       F                       V
Sbjct: 483 NV-YDKVKLPKDLLEYITTLQPTEKLYYKDQYMRSF--------------------EGKV 521

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAE 551
             I +               ++ D+T FY E GGQLGDTG  I +   +       +K  
Sbjct: 522 LGIYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVVDTQKVN 568

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            + +H    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG H+ Q G+ 
Sbjct: 569 DVIIHVLKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGDHIWQAGAE 628

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
            TP+  R D+TH K +T  E+K IE+  N +I+   PV    MNR +A      ++    
Sbjct: 629 KTPEKGRLDITHHKALTEEEVKLIENYANSVISDRRPVKPLEMNRMEAEMKYGVSIYE-- 686

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                   ++   +        CGGTHVS+T EI  + I++   I+ GI R+E + G   
Sbjct: 687 -GGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVERIQDGIIRLEYVAGPAL 745

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSC 788
             ++   + K+   +  +  S   +  R+  I  E  K   +  + +  +  E    L  
Sbjct: 746 VDYIRETEAKIAEASKIIGTSPDQLPSRLRRILNEVEKKNNLIIQYRRIVETELLNSLKP 805

Query: 789 HKIADVNFMSHIISEVDSKE-----LKSV 812
           ++I       +II  ++ +E     L+ +
Sbjct: 806 YEINGNKI--YIIEGLNDEEENKEILRKL 832


>gi|330834452|ref|YP_004409180.1| alanyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329566591|gb|AEB94696.1| alanyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 903

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 198/907 (21%), Positives = 369/907 (40%), Gaps = 154/907 (16%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++S  R  FL+FF++NGHE++    ++      L  T + +V F+   T G   P    +
Sbjct: 61  SMSEARRKFLDFFRRNGHEVIQPKPVLARWREDLYLTIASIVDFQPYITSGVSPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R     +D+DNVG T  RH T FEM G+ +F       Y+K+  +  A +  T
Sbjct: 121 VISQPCIRM----DDVDNVGITFGRHLTTFEMGGHHAFNYPDKFIYWKDETVAYAKEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +E  + +  L                                +++W     G  GP  E+
Sbjct: 177 EEMKIPEELL-----------------------------NFKESWWEGG--GNAGPSFEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E +   +   L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYEIKGD-QYVPLKLKIVDTGYGIERLAW 246

Query: 236 VLQEKTNNY--------------------DIDLFKHLIQASEQVTGMKYEGNNIVNHRV- 274
             Q+   ++                    D  + K   + + ++             +V 
Sbjct: 247 FTQKTPTSFHAIYGELVDKFVGKLNMPRLDNGILKVASRYAGRIDPDLPSTVEEHRRQVA 306

Query: 275 ----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                 ++DH ++ S ++ DG++P++ G GY+ R ++RRA+   
Sbjct: 307 QTLGLPVKEVSDELTRAARVFQVLDHTKTISLMLGDGLVPSSGGEGYLGRLLIRRALRTL 366

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           +LLG    L   L+       G  + +L + +  I + +  E E+F + L +   + +  
Sbjct: 367 KLLGIDVRLS-ELVEMQIEFWGKDFTQLYRNRDYIIDAVNLEQEKFREVLTKMTAVANSF 425

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
                    +  +   +LYD+HG+P D++ D L ++GL      +F   + ++   A   
Sbjct: 426 AQRKD----VGVEDLIRLYDSHGIPPDLIADELRSKGLKVEIPHNFYSIVAKRHQSAPVK 481

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                +    ++   +K+    T+ + Y      KF                        
Sbjct: 482 KEWETTKLPLEVVNQVKD-LEPTEKVYYQDQYARKF------------------------ 516

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                +G++++         +V ++T FY E GGQLGD G       R+++ D QK    
Sbjct: 517 -----EGKVIKSIGK----YLVLNRTVFYPEGGGQLGDQGWITIGNERIKVVDTQK--VN 565

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             V H +     L+   ++   ID+  R ++  +H+ATH++  A   +LG HV Q G+  
Sbjct: 566 EVVVHVMEREVDLKGNETVQGEIDWVRRFRMMRHHTATHVILAAAKKLLGDHVWQAGAEK 625

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           TP+  R D+TH K ++  ++  +E   N +I    PV    +NR +A      ++     
Sbjct: 626 TPEKARLDITHHKNLSEEDIIKLEHMANQVIDDRRPVTPFEINRTEAELKFGVSIYEGGV 685

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            ++  +  +   D        CGGTHVS+T +I  + I++   I+ GI R+E + G    
Sbjct: 686 PNKPTLRLL---DIKDWDVESCGGTHVSNTADIGGVKIINVEKIQDGIIRLEYVAGDVVS 742

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSCH 789
            +    ++K+ SLAS L+ S   +  R+ ++ EE  +++ + A  + Q        +   
Sbjct: 743 LYARQLEDKISSLASKLETSPSQLEFRLNKLIEENEEMKELVASYRRQFLEGVERVVELR 802

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
           +I ++  ++ + + VD++  K  +  L  K    ++ +       K  V I  + DL   
Sbjct: 803 RINEIT-LALLPTMVDTELEKEAIRRLTSK--EKVVAIHVSQTNGKLKVDIGTSRDLNVS 859

Query: 850 FNAVDLA 856
           F   +L 
Sbjct: 860 FIVNNLV 866


>gi|15791093|ref|NP_280917.1| alanyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|169236845|ref|YP_001690045.1| alanyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|22096204|sp|Q9HN24|SYA_HALSA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830064|sp|B0R7I0|SYA_HALS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|10581694|gb|AAG20397.1| alanyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|167727911|emb|CAP14699.1| alanine--tRNA ligase [Halobacterium salinarum R1]
          Length = 929

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 223/959 (23%), Positives = 370/959 (38%), Gaps = 162/959 (16%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKN-IFTGQEKPVYQA 60
           +++ +R+  + +F++ GH+ +    +        ++ T + +  F+  + +G   P    
Sbjct: 61  SLTEMRSAMVSYFERAGHDSIDPYPVAANRWRDDVLLTQASIYDFQPHVTSGASPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   Q C+R      D+DNVG+T RH   FEMLG+ +F     +     A+D        
Sbjct: 121 LVVSQPCIRM----QDIDNVGKTGRHTMAFEMLGHHAFNA---DEGTDYAYD-------- 165

Query: 121 DQRRLYITVYDEDE--EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
                   VY +D   E  +      G+S D++  I   ++ W     G  G   E+ + 
Sbjct: 166 ------GEVYWKDTAVEHCEGLLADVGVSLDEVTFI---EDPWVGG--GNAGAAFEVIY- 213

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--------LPKMSIDTGMGL 230
                            R +E+  LVFM  E+    E  +        + +  +DTG G+
Sbjct: 214 -----------------RGLELATLVFMSLERDPDGEYEMKDGHTYAEMDRRVVDTGYGV 256

Query: 231 ERMATVLQEKTNNYDI---DLFKHLIQASEQVTGMKYEGNNIVN---------------- 271
           ER   + Q     Y+    D    L + +      +                        
Sbjct: 257 ERWTWMSQGTPTVYEAVYPDTIDFLKEQAGIEHTDEEAELVHRASKHAGNLDIDEVADIE 316

Query: 272 --------------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
                                        I DH R  +++  DGI+P+N G GY+ R ++
Sbjct: 317 DARAGIAAELGVDAERLTELVAPLEDIYAIADHSRVLAYMFGDGIVPSNVGTGYLARMVL 376

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR       +G   PL   L+      +G       + +  I   +RSE E++G+TL+RG
Sbjct: 377 RRTKRLVDDIGADVPL-DELVDMQADRLGY------ENRDTIRSIVRSEVEKYGETLERG 429

Query: 366 LVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
              ++ +      + E +  D   +LYD+HG+   ++ DI    G        F   +  
Sbjct: 430 GRRVEQLAEEYADRGEPVPTDELIELYDSHGIQPGMVADIAADVGATVDAPDDFYSLV-- 487

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
               AR      G+   +            T+ + YD   GS+F                
Sbjct: 488 ---AARHDDGDSGAAGGDGGGDDRLADLPETETLYYDDAYGSEF---------------- 528

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                ++V  + +      E   G     VV DQT FY E GGQ  DTG   GD   + +
Sbjct: 529 ----EAVVLDVFE-----REGEDGDGAFDVVLDQTMFYPEGGGQPADTGVLTGDDHTVDV 579

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DVQ++   +                 +   ID + RR+L  +H+ATH++ +A   +LG 
Sbjct: 580 IDVQERDGVVLHR----TTDNPGKGEFVRGQIDTERRRRLMAHHTATHIVVYAARQVLGE 635

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q G+    D  R DVTH + +    +K IE   N+I+  N  V     +R +A A  
Sbjct: 636 HVRQAGAQKGVDSSRIDVTHYERVDRETVKEIERVANEIVRANTSVQCEWPDRHEAEAEY 695

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              L         ++  V  +D        CGGTHV+ TGEI  + I++   ++ G+ R+
Sbjct: 696 GFDLYQGGIPAGEQIRLVHVDDD----VQACGGTHVARTGEIGSIKILNAERVQDGVERL 751

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
               G  A  H+ GQ++ L++ A  L V+   V    E  + E++         K QL  
Sbjct: 752 TFAAGAAAVEHVQGQEDDLRAAAEVLDVTPAEVPETAERFFTEWKDRGKTIDDLKEQLAE 811

Query: 784 EDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
              S         +A    +   +   D  EL++  +AL   +  G + +VG   +    
Sbjct: 812 ARASGGGAGEEVDVAGTTAVVQRVDG-DMDELQATANAL---VDGGQVAVVGSGADGAQF 867

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
              VV        NA ++    A ++GGGG GG P  AQ GGP+  + D A++  A  L
Sbjct: 868 ---VVGVPDGVPVNAGEVVGELAAMVGGGG-GGPPDFAQGGGPDAERLDDALSRAADVL 922


>gi|301107111|ref|XP_002902638.1| alanyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262098512|gb|EEY56564.1| alanyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 332

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 155/321 (48%), Positives = 212/321 (66%), Gaps = 22/321 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQ----EKPVY 58
            + +R+ FL+FF+  GH ++PS+SL+P   D +L+F N+GMVPFK  F G     +   Y
Sbjct: 24  STELRSRFLQFFESQGHRIVPSASLVPPGGDQSLLFVNAGMVPFKQAFLGIDGGAKARGY 83

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ Q+CVRAGGKHNDLD VG T RHHT FEMLGNFSFG YFK++AI + W  LT+E 
Sbjct: 84  SRATSAQRCVRAGGKHNDLDQVGLTRRHHTMFEMLGNFSFGDYFKKQAITMCWRFLTQEL 143

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L   RL++TV   D+EA +LWK+I+GL   KI  +  +DNFW+M ++GPCGPCSE+F+D
Sbjct: 144 ELPIDRLHVTVLKSDQEARRLWKQIAGLPDHKIQELDEHDNFWAMGDSGPCGPCSEVFWD 203

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN-KQERFILPKMSIDTGMGLERMATVL 237
            G+ I       ++  ER++E+WNLVFMQF +     E   LP  S+DTGMGLER+A+VL
Sbjct: 204 LGDHI-------ADPDERFLELWNLVFMQFFRNEGDSELHALPNCSVDTGMGLERVASVL 256

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           Q   +NY  D+F  L+                   R++ DHLR++  L+ DG+ P+N GR
Sbjct: 257 QGVPSNYHTDVFVPLLTEVAT---------RSKTLRIVSDHLRATYALLQDGVFPSNIGR 307

Query: 298 GYVLRRIMRRAMCYARLLGYT 318
           GYVLRRI+RRA+ +A+ LG  
Sbjct: 308 GYVLRRIIRRAIRHAQQLGVR 328


>gi|229585297|ref|YP_002843799.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|259511818|sp|C3MZC2|SYA_SULIA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|228020347|gb|ACP55754.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
          Length = 900

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 185/867 (21%), Positives = 337/867 (38%), Gaps = 152/867 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            V   R  FL FF+K GH  +    ++      L  T + +V F+  + +G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRISPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE     A +  T
Sbjct: 121 VVSQPSIRLE----DIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKEETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  + +  L                                +++W     G  GPC E+
Sbjct: 177 KELGIPEEEL-----------------------------NFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDI--------------------------------------DLFKHLIQASE 257
           + Q+  + +                                        D  K   Q   
Sbjct: 248 ITQKTPSAFHAIYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 258 QVTGMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           +  G+  +       R      I+DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +   
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTIK 482

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           S         K           T+ + Y       F                       V
Sbjct: 483 S-AYDKVKLPKDMLEYITALQPTEKLYYKDQYMRSF--------------------EGKV 521

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-VQKKAE 551
             + +               ++ D+T FY E GGQLGDTG  I +    +      +K  
Sbjct: 522 LGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQKVN 568

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G+ 
Sbjct: 569 DVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAGAE 628

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
            TP+  R D+TH K +T  E+K IE+  N +I+   PV    MNR +A      ++    
Sbjct: 629 KTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRPVKPLEMNRMEAEMKYGVSIYE-- 686

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                   ++   +        CGGTHVS+T EI  + I++   I+ G+ R+E + G   
Sbjct: 687 -GGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGPAL 745

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSC 788
             ++   + K+   +  +  S   +  R+  I  E  +   +  + +  +  E   +L  
Sbjct: 746 VDYIRETEAKIVEASKIIGSSPDQLTSRLRRILNEIEEKNNLIIQYRRIIETELLNNLKP 805

Query: 789 HKIADVN--FMSHIISEVDSKE-LKSV 812
           ++I       +  +  E ++KE L+ +
Sbjct: 806 YEINGNKIYIIEGLGDEEENKEILRKL 832


>gi|51102330|gb|AAT95878.1| alanyl-tRNA synthetase [Naegleria gruberi]
          Length = 614

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 190/625 (30%), Positives = 316/625 (50%), Gaps = 50/625 (8%)

Query: 93  LGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKIS 144
           LGN+SFG YFK  AI  AW+LLT+ + L++ RLY+T +          DEEA ++W +  
Sbjct: 1   LGNWSFGDYFKREAITWAWELLTEVYGLEKDRLYVTYFGGNEKLNLPADEEAKQIWGQF- 59

Query: 145 GLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLV 204
            +  D I+  +  DNFW M +TGPCGPCSEI +D+           + +    +EIWN V
Sbjct: 60  -VPDDHILPGSMKDNFWEMGDTGPCGPCSEIHYDRI-GGRNAAHLVNMDDPNVLEIWNNV 117

Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
           FM+F ++  Q    LP   +DTGMGLER+ ++LQ K +NYD D+F  + +A ++ TG + 
Sbjct: 118 FMEFNRKEDQTLEYLPAKHVDTGMGLERLVSILQNKMSNYDTDVFMPIFEAIQKETGSRP 177

Query: 265 E---------GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                      +    +RVI DH+R+    ++DG  P N GRGYVLRRI+RRA+ +   +
Sbjct: 178 YTGKLGAEDVDHIDTAYRVIADHIRTLVIALSDGGYPDNTGRGYVLRRIVRRAVRFGEFM 237

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
              +  +  L   +   MG  +PEL +    +EE ++SE+  F KTL  GL   + +   
Sbjct: 238 NAKKGFLTRLASCVVELMGDFFPELKKNSEKVEELIQSEEVLFAKTLRVGLKFFNRIAEK 297

Query: 376 LGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           +  +   +++G  AFKLY T+G P+D+   +   +G+  +D++ + + +E+  + ++   
Sbjct: 298 MKSNGESVVSGPDAFKLYATYGFPVDLTLIMAQEQGMT-VDMVEYKKEMEKHATASQGTK 356

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                     I                      K   E +    Q     +   + + V 
Sbjct: 357 QEATDMKLGVI-------------------ETDKLQNELKIEPTQDDIKYVWENIQAKVV 397

Query: 494 AIVQQGE-IVEEAVSGQK---VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           AI  +    VEE  +  +   + ++ DQT FYAE GGQ  D G        L++ +VQK 
Sbjct: 398 AIFSESSGFVEELNTECEEVNIGIILDQTNFYAEGGGQAPDNGVLRIGETELKVVNVQKF 457

Query: 550 AEGIFVHHAIVER---GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           A  I     + E    G +    ++   ++Y+ R  ++ NH++TH+L+ AL  +LG+   
Sbjct: 458 AGYILHIVNVSESKLAGNVTVGTTVSSEVNYERREPIAANHTSTHMLNFALRKVLGTDCD 517

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAA 665
           Q GS +  + L FD + +K  +  ++  +E  VND+I  + PV +++  R+ A   +G  
Sbjct: 518 QQGSIVKEEELCFDFSAAKAPSVEQVAEVEKIVNDLIVADHPVFSKVQERDAAYEINGLR 577

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHS 690
           A+    Y ++VRVVS+  +   + +
Sbjct: 578 AMFSANYGEQVRVVSIGQDSDSIMT 602


>gi|315427515|dbj|BAJ49118.1| alanyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 865

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 188/914 (20%), Positives = 344/914 (37%), Gaps = 166/914 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +V   R +F+EFF + GH  +    ++      L  T++ +V F+   T G   P    +
Sbjct: 17  SVREARQSFIEFFAQRGHAPIKPYPIVARWRTDLYLTDASIVDFQPWVTNGIAPPPANPL 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C R      DLD +G T  RH T FEM G+ +F       Y+K    +   + +T
Sbjct: 77  VISQPCARLV----DLDKIGLTFGRHLTVFEMGGHHAFNYPEKKIYWKSETAEYCHEFMT 132

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               +    L   VY                           +++W+    G  GPC E+
Sbjct: 133 SVLGVPTGEL---VY--------------------------KESWWAGG--GNEGPCLEV 161

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                  I GG           +E+  LVFMQF +    ER   P  ++DTG G+ER+A 
Sbjct: 162 -------IAGG-----------LELATLVFMQF-KTLDGERAETPIKTVDTGYGIERLAW 202

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNN------------------ 268
             Q+  + +D  ++  L+    ++  +         KY                      
Sbjct: 203 FSQQTPSAFDA-IYGELLAKVRELIPVNRPDEELLIKYAKYTGLVKPGADATVSELRRKV 261

Query: 269 -----------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                   +D+ ++ +F++A+G++P+N   GY+ R ++RRA   
Sbjct: 262 ASMAGISVETVNEQIVPYEKVYQALDYSKAIAFIVAEGVVPSNVKTGYLTRLLIRRAYRL 321

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            R++   E L+  L+          +P L + +  + + +  E  +F +T+ RG    + 
Sbjct: 322 LRMVDAEEKLL-DLVDLQIRYWEKDFPHLSEMREEVLDIVEHEVNKFRETIKRGT---ET 377

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           VL  L   + ++ +   + YD  GL  DI+ ++   +G+      +F + +  +  R + 
Sbjct: 378 VLRELRSTKAISVEKLIQYYDDKGLTPDIVAEVAAKQGVEVTVPENFYELVASRHLREKP 437

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +        +         T  + Y+      F                     + 
Sbjct: 438 VKTTMQKQIDVSSY-------PKTHKLYYEQPNSYSFR--------------------AK 470

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  +             +   V+ D T FY E GG +GDTG  +       + D Q   +
Sbjct: 471 VLGV-------------ENGYVILDATLFYPEGGGAVGDTGTLVCRDKVCTVVDTQILED 517

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            +                 +   +D + R+ +  +H+ATH+L  A+  +LG H  Q G+ 
Sbjct: 518 VVVHRVEGPVPD---VGEEVEGYVDAERRQAIVRHHTATHILLGAVRRVLGKHAWQAGAR 574

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
             P+  R D  H K +T  +++ IE   N ++A+ +PV  + M+R +A  +    L    
Sbjct: 575 KEPEKGRLDFYHHKRLTLEQIREIEKLANRVVARRIPVRIKWMDRNEAEETYGFGLYQGG 634

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +   D        CGG H  +T ++ L+ IVS   I+ G+ RIE + G 
Sbjct: 635 EVPLGVIRVVEIPGWDA-----EACGGIHCENTEDVGLIKIVSSERIQDGVERIEFVAGP 689

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                  G +  L  +A  L+    ++  +V E+ E  R L+        +L V   +  
Sbjct: 690 ANLHRYQGMETMLHEVAEKLQAPVEDIPKKVAELDENLRILRKTVKTLSEKLIVYRAAEI 749

Query: 790 KIADVNFMSHII-----SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           +   +   S ++        D + L  +   + K  +  + +    +   K  V +   +
Sbjct: 750 RSVGIAVDSLLLYISEEEYDDEEYLIKLAAEIVKVDKPAVALAYAGTPSAKV-VAVANDK 808

Query: 845 DLLDRFNAVDLARL 858
            +    N  ++ R 
Sbjct: 809 AVAAGVNVGEVLRK 822


>gi|315425504|dbj|BAJ47166.1| alanyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 909

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 188/914 (20%), Positives = 344/914 (37%), Gaps = 166/914 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +V   R +F+EFF + GH  +    ++      L  T++ +V F+   T G   P    +
Sbjct: 61  SVREARQSFIEFFAQRGHAPIKPYPIVARWRTDLYLTDASIVDFQPWVTNGIAPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C R      DLD +G T  RH T FEM G+ +F       Y+K    +   + +T
Sbjct: 121 VISQPCARLV----DLDKIGLTFGRHLTVFEMGGHHAFNYPEKKIYWKSETAEYCHEFMT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               +    L   VY                           +++W+    G  GPC E+
Sbjct: 177 SVLGVPTGEL---VY--------------------------KESWWAGG--GNEGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                  I GG           +E+  LVFMQF +    ER   P  ++DTG G+ER+A 
Sbjct: 206 -------IAGG-----------LELATLVFMQF-KTLDGERAETPIKTVDTGYGIERLAW 246

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNN------------------ 268
             Q+  + +D  ++  L+    ++  +         KY                      
Sbjct: 247 FSQQTPSAFDA-IYGELLAKVRELIPVNRPDEELLIKYAKYTGLVKPGADATVSELRRKV 305

Query: 269 -----------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                   +D+ ++ +F++A+G++P+N   GY+ R ++RRA   
Sbjct: 306 ASMAGISVETVNEQIVPYEKVYQALDYSKAIAFIVAEGVVPSNVKTGYLTRLLIRRAYRL 365

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            R++   E L+  L+          +P L + +  + + +  E  +F +T+ RG    + 
Sbjct: 366 LRMVDAEEKLL-DLVDLQIRYWEKDFPHLSEMREEVLDIVEHEVNKFRETIKRGT---ET 421

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           VL  L   + ++ +   + YD  GL  DI+ ++   +G+      +F + +  +  R + 
Sbjct: 422 VLRELRSTKAISVEKLIQYYDDKGLTPDIVAEVAAKQGVEVTVPENFYELVASRHLREKP 481

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +        +         T  + Y+      F                     + 
Sbjct: 482 VKTTMQKQIDVSSY-------PKTHKLYYEQPNSYSFR--------------------AK 514

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  +             +   V+ D T FY E GG +GDTG  +       + D Q   +
Sbjct: 515 VLGV-------------ENGYVILDATLFYPEGGGAVGDTGTLVCRDKVCTVVDTQILED 561

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            +                 +   +D + R+ +  +H+ATH+L  A+  +LG H  Q G+ 
Sbjct: 562 VVVHRVEGPVPD---VGEEVEGYVDAERRQAIVRHHTATHILLGAVRRVLGKHAWQAGAR 618

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
             P+  R D  H K +T  +++ IE   N ++A+ +PV  + M+R +A  +    L    
Sbjct: 619 KEPEKGRLDFYHHKRLTLEQIREIEKLANRVVARRIPVRIKWMDRNEAEETYGFGLYQGG 678

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +   D        CGG H  +T ++ L+ IVS   I+ G+ RIE + G 
Sbjct: 679 EVPLGVIRVVEIPGWDA-----EACGGIHCENTEDVGLIKIVSSERIQDGVERIEFVAGP 733

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                  G +  L  +A  L+    ++  +V E+ E  R L+        +L V   +  
Sbjct: 734 ANLHRYQGMETMLHEVAEKLQAPVEDIPKKVAELDENLRILRKTVKTLSEKLIVYRAAEI 793

Query: 790 KIADVNFMSHII-----SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           +   +   S ++        D + L  +   + K  +  + +    +   K  V +   +
Sbjct: 794 RSVGIAVDSLLLYISEEEYDDEEYLIKLAAEIVKVDKPAVALAYAGTPSAKV-VAVANDK 852

Query: 845 DLLDRFNAVDLARL 858
            +    N  ++ R 
Sbjct: 853 AVAAGVNVGEVLRK 866


>gi|227830765|ref|YP_002832545.1| alanyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|284998279|ref|YP_003420047.1| alanyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
 gi|259511820|sp|C3MR87|SYA_SULIL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|227457213|gb|ACP35900.1| alanyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|284446175|gb|ADB87677.1| alanyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
          Length = 900

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 184/867 (21%), Positives = 335/867 (38%), Gaps = 152/867 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            V   R  FL FF+K GH  +    ++      L  T + +V F+  + +G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRISPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE     A +  T
Sbjct: 121 VVSQPSIRLE----DIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKEETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  + +  L                                +++W     G  GPC E+
Sbjct: 177 KELGIPEEEL-----------------------------NFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDI--------------------------------------DLFKHLIQASE 257
           + Q+  + +                                        D  K   Q   
Sbjct: 248 ITQKTPSAFHAIYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 258 QVTGMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           +  G+  +       R      I+DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +   
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTIK 482

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           S         K           T+ + Y       F                       V
Sbjct: 483 S-AYDKVKLPKDMLEYITALQPTEKLYYKDQYMRSF--------------------EGKV 521

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-VQKKAE 551
             + +               ++ D+T FY E GGQLGDTG  I +    +      +K  
Sbjct: 522 LGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQKVN 568

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G+ 
Sbjct: 569 DVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAGAE 628

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
            TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++    
Sbjct: 629 KTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIYE-- 686

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                   ++   +        CGGTHVS+T EI  + I++   I+ G+ R+E + G   
Sbjct: 687 -GGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGPAL 745

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSC 788
             ++     K+   +  +  S   +  R+  I  E  +   +  + +  +  E   +L  
Sbjct: 746 VDYIRETQAKIVEASKIIGTSPDQLTSRLRRILNEIEEKNNLIIQYRRIIETELLNNLKP 805

Query: 789 HKIADVN--FMSHIISEVDSKE-LKSV 812
           ++I       +  +  E ++KE L+ +
Sbjct: 806 YEINGNKIYIIEGLGDEEENKEILRKL 832


>gi|227828028|ref|YP_002829808.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|238620257|ref|YP_002915083.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
 gi|259511819|sp|C4KIK1|SYA_SULIK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|259511821|sp|C3MXH6|SYA_SULIM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|227459824|gb|ACP38510.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|238381327|gb|ACR42415.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
          Length = 900

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 183/867 (21%), Positives = 339/867 (39%), Gaps = 152/867 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            V   R  FL FF+K GH  +    ++      L  T + +V F+  + +G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRISPKPVLARWRDDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A +  T
Sbjct: 121 VVSQPSIRLE----DIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKDETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE                           G+  +    +   +++W     G  GPC E+
Sbjct: 177 KEL--------------------------GIPEE---ELNFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDI--------------------------------------DLFKHLIQASE 257
           + Q+  + +                                        D  K   Q   
Sbjct: 248 ITQKTPSAFHAIYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 258 QVTGMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           +  G+  +       R      I+DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +   
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTIK 482

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           S+        K           T+ + Y       F                       V
Sbjct: 483 SV-YDKVKLPKDMLEYITALQPTEKLYYKDQYMRSF--------------------EGKV 521

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-VQKKAE 551
             + +               ++ D+T FY E GGQLGDTG  I +    +      +K  
Sbjct: 522 LGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQKVN 568

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G+ 
Sbjct: 569 DVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAGAE 628

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
            TP+  R D+TH K +T  E+K IE+  N +I+   PV    MNR +A      ++    
Sbjct: 629 KTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRPVKPLEMNRMEAEMKYGVSIYE-- 686

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                   ++   +        CGGTHVS+T EI  + I++   I+ G+ R+E + G   
Sbjct: 687 -GGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGPAL 745

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSC 788
             ++   + K+   +  +  S   +  R+  +  E  +   +  + +  +  E   +L  
Sbjct: 746 VDYIRETEAKIVEASKIIGSSPDQLTSRLRRLLNEIEEKNNLIIQYRRIIETELLNNLKP 805

Query: 789 HKIADVN--FMSHIISEVDSKE-LKSV 812
           ++I       +  +  E ++KE L+ +
Sbjct: 806 YEINGNKIYIIEGLGDEEENKEILRKL 832


>gi|323477850|gb|ADX83088.1| alanyl-tRNA synthetase [Sulfolobus islandicus HVE10/4]
          Length = 900

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 184/867 (21%), Positives = 338/867 (38%), Gaps = 152/867 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            V   R  FL FF+K GH  +P   ++      L  T + +V F+  + +G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRIPPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A +  T
Sbjct: 121 VVSQPSIRLE----DIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKDETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE                           G+  +    +   +++W     G  GPC E+
Sbjct: 177 KEL--------------------------GIPEE---ELNFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDI--------------------------------------DLFKHLIQASE 257
           V Q+  + +                                        D  K   Q   
Sbjct: 248 VTQKTPSAFHAIYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 258 QVTGMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           +  G+  +       R      I+DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +   
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTIK 482

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           S         K           T+ + Y       F                       V
Sbjct: 483 S-AYDKVKLPKDMLEYITALQPTEKLYYKDQYMRSF--------------------EGKV 521

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-VQKKAE 551
             + +               ++ D+T FY E GGQLGDTG  I +    +      +K  
Sbjct: 522 LGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQKVN 568

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G+ 
Sbjct: 569 DVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAGAE 628

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
            TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++    
Sbjct: 629 KTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIYE-- 686

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                   ++   +        CGGTHVS+T EI  + I++   I+ G+ R+E + G   
Sbjct: 687 -GGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGPAL 745

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSC 788
             ++   + K+   +  +  S   +  R+  +  E  +   +  + +  +  E   +L  
Sbjct: 746 VDYIRETEAKIVEASKIIGSSPDQLTSRLRRLLNEIEEKNNLIIQYRRIIETELLNNLKP 805

Query: 789 HKIADVN--FMSHIISEVDSKE-LKSV 812
           ++I       +  +  E ++KE L+ +
Sbjct: 806 YEINGNKIYIIEGLGDEEENKEILRKL 832


>gi|229579660|ref|YP_002838059.1| alanyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|259511823|sp|C3N7E3|SYA_SULIY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|228010375|gb|ACP46137.1| alanyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
          Length = 900

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 184/867 (21%), Positives = 335/867 (38%), Gaps = 152/867 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            V   R  FL FF+K GH  +    ++      L  T + +V F+  + +G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRISPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE     A +  T
Sbjct: 121 VVSQPSIRLE----DIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKEETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  + +  L                                +++W     G  GPC E+
Sbjct: 177 KELGIPEEEL-----------------------------NFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDI--------------------------------------DLFKHLIQASE 257
           + Q+  + +                                        D  K   Q   
Sbjct: 248 ITQKTPSAFHAIYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 258 QVTGMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           +  G+  +       R      I+DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +   
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTIK 482

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           S         K           T+ + Y       F                       V
Sbjct: 483 S-AYDKVKLPKDMLEYITALQPTEKLYYKDQYMRSF--------------------EGKV 521

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-VQKKAE 551
             + +               ++ D+T FY E GGQLGDTG  I +    +      +K  
Sbjct: 522 LGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQKVN 568

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G+ 
Sbjct: 569 DVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAGAE 628

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
            TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++    
Sbjct: 629 KTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIYE-- 686

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                   ++   +        CGGTHVS+T EI  + I++   I+ G+ R+E + G   
Sbjct: 687 -GGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGPAL 745

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSC 788
             ++     K+   +  +  S   +  R+  I  E  +   +  + +  +  E   +L  
Sbjct: 746 VDYIRETQAKIVEASKIIGTSPDQLTSRLRRILNEIEEKNNLIIQYRRIIETELLNNLKP 805

Query: 789 HKIADVN--FMSHIISEVDSKE-LKSV 812
           ++I       +  +  E ++KE L+ +
Sbjct: 806 YEINSNKIYIIEGLGDEEENKEILRKL 832


>gi|229581674|ref|YP_002840073.1| alanyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|259511822|sp|C3NG91|SYA_SULIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|228012390|gb|ACP48151.1| alanyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
          Length = 900

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 184/867 (21%), Positives = 335/867 (38%), Gaps = 152/867 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            V   R  FL FF+K GH  +    ++      L  T + +V F+  + +G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRISPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPTNPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE     A +  T
Sbjct: 121 VVSQPSIRLE----DIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKEETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  + +  L                                +++W     G  GPC E+
Sbjct: 177 KELGIPEEEL-----------------------------NFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDI--------------------------------------DLFKHLIQASE 257
           + Q+  + +                                        D  K   Q   
Sbjct: 248 ITQKTPSAFHAIYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 258 QVTGMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           +  G+  +       R      I+DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +   
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTIK 482

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           S         K           T+ + Y       F                       V
Sbjct: 483 S-AYDKVKLPKDMLEYITALQPTEKLYYKDQYMRSF--------------------EGKV 521

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-VQKKAE 551
             + +               ++ D+T FY E GGQLGDTG  I +    +      +K  
Sbjct: 522 LGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQKVN 568

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G+ 
Sbjct: 569 DVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAGAE 628

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
            TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++    
Sbjct: 629 KTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIYE-- 686

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                   ++   +        CGGTHVS+T EI  + I++   I+ G+ R+E + G   
Sbjct: 687 -GGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGPAL 745

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSC 788
             ++     K+   +  +  S   +  R+  I  E  +   +  + +  +  E   +L  
Sbjct: 746 VDYIRETQAKIVEASKIIGTSPDQLTSRLRRILNEIEEKNNLIIQYRRIIETELLNNLKP 805

Query: 789 HKIADVN--FMSHIISEVDSKE-LKSV 812
           ++I       +  +  E ++KE L+ +
Sbjct: 806 YEINGNKIYIIEGLGDEEENKEILRKL 832


>gi|323475119|gb|ADX85725.1| alanyl-tRNA synthetase [Sulfolobus islandicus REY15A]
          Length = 900

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 184/867 (21%), Positives = 338/867 (38%), Gaps = 152/867 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            V   R  FL FF+K GH  +P   ++      L  T + +V F+  + +G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRIPPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A +  T
Sbjct: 121 VVSQPSIRLE----DIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKDETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE                           G+  +    +   +++W     G  GPC E+
Sbjct: 177 KEL--------------------------GIPEE---ELNFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDI--------------------------------------DLFKHLIQASE 257
           V Q+  + +                                        D  K   Q   
Sbjct: 248 VTQKTPSAFHAIYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 258 QVTGMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           +  G+  +       R      I+DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +   
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTIK 482

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           S         K           T+ + Y       F                       V
Sbjct: 483 S-AYDKVKLPKDMLEYITALQPTEKLYYKDQYMRSF--------------------EGKV 521

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-VQKKAE 551
             + +               ++ D+T FY E GGQLGDTG  I +    +      +K  
Sbjct: 522 LGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQKVN 568

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G+ 
Sbjct: 569 DVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAGAE 628

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
            TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++    
Sbjct: 629 KTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIYE-- 686

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                   ++   +        CGGTHVS+T EI  + I++   I+ G+ R+E + G   
Sbjct: 687 -GGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVGGPAL 745

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSC 788
             ++   + K+   +  +  S   +  R+  +  E  +   +  + +  +  E   +L  
Sbjct: 746 VDYIRETEAKIVEASKIIGSSPDQLTSRLRRLLNEIEEKNNLIIQYRRIIETELLNNLKP 805

Query: 789 HKIADVN--FMSHIISEVDSKE-LKSV 812
           ++I       +  +  E ++KE L+ +
Sbjct: 806 YEINGNKIYIIEGLGDEEENKEILRKL 832


>gi|160879109|ref|YP_001558077.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|205829960|sp|A9KLZ5|SYA2_CLOPH RecName: Full=Alanyl-tRNA synthetase 2; AltName: Full=Alanine--tRNA
           ligase 2; Short=AlaRS 2
 gi|160427775|gb|ABX41338.1| Alanine--tRNA ligase [Clostridium phytofermentans ISDg]
          Length = 591

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 275/514 (53%), Gaps = 24/514 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  ++++F++ GH+ + S+SL+P NDPT++FT +GM P      G+  P    +
Sbjct: 1   MTANELRKMYVDYFKERGHQEIASASLLPENDPTVLFTTAGMHPLVPYLLGENHPKGTRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQKCVR G    D+D VG    H TFFEMLGN+S G YFKE +I +++D LT   ++ 
Sbjct: 61  VSVQKCVRTG----DIDEVGDDT-HLTFFEMLGNWSLGEYFKEESISISYDFLTTCLNIP 115

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPCSE 174
           + +L +TV++ DE      E  + WK   GL  ++I      +N+W    +TGPCG  +E
Sbjct: 116 KEKLAVTVFEGDELVPRDEEVSQTWKSK-GLQDNQIFYYGREENWWGPAGQTGPCGTDTE 174

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IF+D G+   G   G + +  +Y+EIWN VFMQ+ ++       + + ++DTGMG ER+ 
Sbjct: 175 IFYDMGKPSCGVNCGPACDCGKYVEIWNNVFMQYHKKPDGSYEEMKQKNVDTGMGFERVL 234

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG--ILP 292
           T+L   TN Y+ +LF  +    +++        +  + R+I +H+R+ +FL+ D   I+P
Sbjct: 235 TILNGYTNVYETELFLPVKNRLDEIIEANEAKLSEKSKRIICEHIRAVTFLLGDPKMIVP 294

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N  +GY+LRR++RR + + + +     ++  L   +  + GS Y EL + +L I E L 
Sbjct: 295 SNSEQGYILRRLIRRMIRHLKQVSIENNVLCKLSKVIVEQYGSIYVELRENELFIMEQLE 354

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E + F KTLDRGL         +G+++ILNG+++FKLYDT G P++   ++     +  
Sbjct: 355 KEYDLFSKTLDRGLKNAKLYFDQVGEEKILNGELSFKLYDTFGFPIEFTIELASEMEIT- 413

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF--------IGYDLLR 464
           +D+ ++NQ   E + ++R  +     G            + AT          +G D+ +
Sbjct: 414 VDVEAYNQKFAEHQKKSRQGAEVKFKGGLSDHGEQTTRLHTATHLLNGALRTVLGTDVFQ 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
               + E+R          LT      V+ IV +
Sbjct: 474 RGSNITEERLRFDFSFHRKLTKEELEEVERIVNE 507



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 5/150 (3%)

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           +  Q +  H+ATHLL+ AL T+LG+ V Q GS IT + LRFD +  + +T  EL+ +E  
Sbjct: 445 HGEQTTRLHTATHLLNGALRTVLGTDVFQRGSNITEERLRFDFSFHRKLTKEELEEVERI 504

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN+ I   + V+   M  ++A   GA  +   KY + V+V  +        S  +CGG H
Sbjct: 505 VNEAIRNQIDVLCEEMTVKEAKELGAVGIFEDKYGEVVKVYMIPGY-----SKEICGGPH 559

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           V +T E+     V E +  AG+RRI+A+ G
Sbjct: 560 VKNTSELKSFRTVKEEASSAGVRRIKAVIG 589


>gi|170291158|ref|YP_001737974.1| alanyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|205830075|sp|B1L762|SYA_KORCO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170175238|gb|ACB08291.1| alanyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 895

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 196/920 (21%), Positives = 342/920 (37%), Gaps = 169/920 (18%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
            ++  +R  FL FF++ GH  +    +I      L  T++ +V F+   T G   P    
Sbjct: 53  KSLEEVREDFLRFFERRGHTRINRYPVIARWREDLFLTSASIVDFQPFITAGIVPPPANP 112

Query: 61  VTTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
           +T  Q C+R      D+D VG T  RH + FEM+ + +F       Y+ +R ++L  +  
Sbjct: 113 LTISQPCIRL----KDIDKVGPTMGRHLSIFEMMAHHAFNTKDKFVYWIDRTVELFHEYA 168

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T    + +                               IT  +  W     G  GP  E
Sbjct: 169 TSVLGIPEE-----------------------------EITYKEGIWEGG--GNAGPDLE 197

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
                   I GG           +EI  LVFMQ+ +        +    +DTG GLER+ 
Sbjct: 198 -------PIAGG-----------LEIATLVFMQY-RIENGSYVPMDTRVVDTGYGLERIT 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE----------------------------- 265
             L+     +       L +  +++   + +                             
Sbjct: 239 WFLRGDPTGFHAVYGALLHEFMDKLGVSEPDLSLLSEYSKVSSILRELEKGRSISSLRRE 298

Query: 266 ---------------GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                             +     ++DH ++ SF+IADG++P+N   GY+ R ++RR++ 
Sbjct: 299 AALLIGVSEEELEEKIAPLEAVFSLLDHTKALSFMIADGLVPSNVNEGYLGRLLIRRSLR 358

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
               LG   PL    +          +PEL +A   I E +  E+ER+ + ++RG  ++ 
Sbjct: 359 ILNQLGSEVPLSELAVRQAEYWSSKGFPELREAIDRIAEIVSIEEERYKEAVERGAKIIS 418

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
            ++   G+   L+ D    LYD+HGL  DI++ I            +F + +  +    +
Sbjct: 419 DLMREKGR---LSVDDLIMLYDSHGLSPDIVRRIAGD----VDVPDNFFEMIAARHEARK 471

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                +     E        +Y  T+ + Y      +F                     +
Sbjct: 472 PEPPKVFERMDE------LRRYPPTKLLYYQDPYLLEF--------------------EA 505

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
            V      G+            ++ D+T FY E GGQ  D G     GI +++   +K  
Sbjct: 506 RVLG-YVDGK------------MILDRTAFYPEGGGQPSDIGSFEWRGIEVKVVGAEKHG 552

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             I      VE  +      +   +D   R     +H+ATH++  A   +LGSHV Q G+
Sbjct: 553 GWILHS---VEGDLPPAGEVVRARVDSWRRLNRMRHHTATHVILEAARRVLGSHVWQWGA 609

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG- 669
               +  R D+TH K I+  EL+ IE   N+++ +N+PV T  + R DA       L   
Sbjct: 610 QKGDEESRLDITHYKGISQEELRRIEMLANEVVMRNIPVRTLWLVRTDAERRYGFTLYQG 669

Query: 670 -TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
               +  +RVV +E  +        CGGTHV  TGEI  + I     I+ G+ R+E   G
Sbjct: 670 GVVPDPVLRVVEIEGFNA-----QACGGTHVLRTGEIGPIKIWRARKIQDGVIRLEFSAG 724

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A   ++   +K+K +A    +S+  +      + EE ++L+    +   +     +  
Sbjct: 725 VPAVKRIIDYHQKIKDIAQSAGISEEEIDTFFRGMMEELKELRKERRRMMKEAEERSIER 784

Query: 789 -----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                            +  +   E   + D L        I+L+      +  + ++ T
Sbjct: 785 ALEAYESTGRHKLSIVRLESIGIDEGIKLADKLSS---DRRIVLLTKESGDRVELALLAT 841

Query: 844 EDLLDRFNAVDLARLSAKVL 863
                  +A  L R  ++ +
Sbjct: 842 NYGEGEVDAGSLLRELSREM 861


>gi|187918093|ref|YP_001883656.1| alanyl-tRNA synthetase [Borrelia hermsii DAH]
 gi|205829992|sp|B2RZT0|SYA_BORHD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119860941|gb|AAX16736.1| alanyl-tRNA synthetase [Borrelia hermsii DAH]
          Length = 593

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 161/470 (34%), Positives = 258/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+  GH  +   SLIP ND T++F  +GM P      G+  P    +
Sbjct: 1   MKLDELRKKYIDFFKSKGHCEIAGKSLIPDNDSTVLFNTAGMQPLVPYLLGEMHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VDVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKELSVKYSFEFLTSPNYLN 115

Query: 120 LDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + + +LY++V++ DE      E   +W+ + G+  D+I  ++   NFW  +  TGPCGP 
Sbjct: 116 ISKDKLYVSVFEGDESIPRDTETANVWESL-GIPKDRIFYLSREHNFWGPVGNTGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EIF D G+         +    +Y EIWN VFMQ+++        L +  +DTGMG+ER
Sbjct: 175 TEIFVDTGKEKCSVRCDITCSCGKYFEIWNNVFMQYKRDENGNYEELKRKCVDTGMGIER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG- 289
             T LQ K++ YD D FK +I   E+++G  Y  N  +  + R+I DH+++S F++AD  
Sbjct: 235 TITFLQGKSSVYDTDAFKPIIDKIEKISGKIYGQNLEDDRSIRIIADHIKASCFILADNF 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            +LP+N G+GYVLRRI+RRA+ YA+ LG    ++  L+ ++     S Y EL + K  I+
Sbjct: 295 AVLPSNIGQGYVLRRIIRRAIRYAKKLGMESYVLADLVDSVEEIYKSFYKELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             L  E+E+F KTL  G      ++  L    I  GD++FKLYDT+G P +I +++    
Sbjct: 355 AELNVEEEKFFKTLRHGEQEFIKLIQQLSSKSI-PGDISFKLYDTYGFPYEITEELATEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G + ID   F +  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GFS-IDKAGFEEHFKKHQEVSKKGGDKVFKGGLADCTYETTKLHTATHLL 462



 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 112/288 (38%), Gaps = 19/288 (6%)

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
           G    +   L +         Y  L   K   +    + ++               ++QQ
Sbjct: 322 GMESYVLADLVDSVEEIYKSFYKELTEKKDFIKAELNVEEEKFFKTLRHGEQEFIKLIQQ 381

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
               +        ++       Y        + G +I      +     ++         
Sbjct: 382 -LSSKSIPGDISFKLYDTYGFPYEITEELATEYGFSIDKAGFEEHFKKHQEV-------- 432

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                  +    +          + +  H+ATHLLH AL  +LG HV Q GS IT + LR
Sbjct: 433 -----SKKGGDKVFKGGLADCTYETTKLHTATHLLHKALQLVLGEHVRQKGSNITAERLR 487

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD  H   +T  E+K +ED VN  I   L V   +MN +DA+A GA AL G KY D V V
Sbjct: 488 FDFNHPYKMTDDEIKQVEDMVNLQIKNKLSVKRSVMNLDDALAKGAMALFGEKYEDIVSV 547

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             ++       S  +CGG HV +TGE+    I  E +  +G+RRI AI
Sbjct: 548 YEIDG-----FSIEVCGGPHVKNTGELGTFKIQKEQASSSGVRRIRAI 590


>gi|298500953|ref|ZP_07010754.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Vibrio cholerae MAK
           757]
 gi|297540201|gb|EFH76261.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Vibrio cholerae MAK
           757]
          Length = 551

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 218/600 (36%), Positives = 325/600 (54%), Gaps = 58/600 (9%)

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR E+E FG+TLD
Sbjct: 3   IIRRAVGHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRIEEENFGRTLD 62

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           RG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + ID   F QA+E
Sbjct: 63  RGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS-IDEAGFEQAME 120

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR RAR        G     + SL +    T+F GY   RG                  
Sbjct: 121 EQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------------------ 156

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG    D     +
Sbjct: 157 -----QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHV 211

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK       HH ++ +G+L T   +   +D + R  +S+NHSATHLLH AL  +LG 
Sbjct: 212 EDTQKLGN-AIAHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGE 270

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T IMN ++A A G
Sbjct: 271 HVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNIMNIDEAKAKG 330

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE  I AGIRRI
Sbjct: 331 AMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISEGGIAAGIRRI 385

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG+ A  +L  Q                    +V E+  + + L+    + K +L  
Sbjct: 386 EAVTGEGALDYLDAQQA--------------QHDAKVSEMAAKAKLLEKEIQQLKDKLAA 431

Query: 784 EDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           ++ +       +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  ++ E K  +
Sbjct: 432 KESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGNVA-EGKVGL 490

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  V +++ +
Sbjct: 491 IAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALESVDAWIAE 549


>gi|307128669|ref|YP_003880699.1| alanyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
 gi|306483131|gb|ADM90001.1| alanyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
          Length = 446

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/448 (35%), Positives = 256/448 (57%), Gaps = 20/448 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N  +I   FL FF+K  H+++ S+SL+  NDPTLMFTN+GM  FKN F   + P +  +
Sbjct: 1   MNYKNIIKNFLYFFKKKNHKIIYSASLLAKNDPTLMFTNAGMNRFKNYFICYKHPKFLRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T +QKC+R  GKHNDL +VG+   HHT FEMLGN+SFG YFK++AI+ AW+LLTK + + 
Sbjct: 61  TNIQKCLRITGKHNDLYDVGKDKYHHTMFEMLGNWSFGDYFKKKAIKWAWELLTKIYKIK 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  +Y+T++  D+        E++K WKK      +KII     +NFW M ETGPCG  S
Sbjct: 121 KDNIYVTIFSGDKKKNLPFDRESYKFWKKRIY--ENKIIFFDKKNNFWEMGETGPCGYSS 178

Query: 174 EIFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    ++     IE+WNLVF+++ ++       LP+  +DTGMG
Sbjct: 179 EIHIDIRNEKEKNKISGKKLINKGHPLVIELWNLVFIEYFREKNGNLEKLPQSHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
           +ER+  +LQ+K + YD D+F  LI+  E +TG+ Y     + +  RV+ DH+R+  F I 
Sbjct: 239 IERLCMILQKKKSTYDTDIFNILIKKIENITGIVYGKFYKHDIAIRVLADHIRAIVFAIK 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG-SAYPELIQAKLL 346
           DG++P+N+  GY++++++RR + Y  +    +   ++ L             ++   + +
Sbjct: 299 DGVIPSNKKSGYIIKKLLRRTIIYYYIFLKKKKKFLYKLVKCVLLQKNKFNYKINNKEKI 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I+  ++ E+  F KT+ +    +  ++        + +NG + FKLYDT+GLP + + + 
Sbjct: 359 IKYIIKKEEILFFKTISKVTFKIKKIIFLLKKEGKKRINGKIIFKLYDTYGLPFE-LANF 417

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH 432
           +  +    ID  SF + + +Q+ R++  
Sbjct: 418 IAIKNNMIIDQFSFEKEMLKQKLRSKQK 445


>gi|213025001|ref|ZP_03339448.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 514

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 237/545 (43%), Positives = 331/545 (60%), Gaps = 42/545 (7%)

Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERY 197
           +  ++IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RY
Sbjct: 1   IPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRY 60

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           IEIWN+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LI+A  
Sbjct: 61  IEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIEAVA 120

Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
           +VTG    GN   + RVI DH+RS +FL+ADG+LP+NE RGYVLRRI+RRA+ +  +LG 
Sbjct: 121 KVTGSTDLGNK--SLRVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGA 178

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E     L+  L   MGSA  EL + +  +E+ L++E+E+F +TL+RGL LLD  L+ L 
Sbjct: 179 KETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQ 238

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
             + L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR       
Sbjct: 239 -GDTLDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA----- 291

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
                  + ++     A++F GYD L                        ++  V A+  
Sbjct: 292 -SGFGADYNAMIRVDSASEFKGYDHLE-----------------------LNGKVTALFV 327

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G   G G    + D QK       H 
Sbjct: 328 DGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFAVDDTQKYG-QAIGHL 386

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +  G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HV+Q GS ++   L
Sbjct: 387 GKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVAQKGSLVSDKVL 446

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H++ +  +E++ +ED VN  I +NLP+ T IM+ + A A GA AL G KY++RVR
Sbjct: 447 RFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETNIMDLDAAKAKGAMALFGEKYDERVR 506

Query: 678 VVSVE 682
           V+S+ 
Sbjct: 507 VLSMG 511


>gi|3136021|emb|CAA19104.1| alanyl-tRNA synthetase [Mycobacterium leprae]
          Length = 272

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 129/279 (46%), Positives = 171/279 (61%), Gaps = 19/279 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQCTPPYATA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D+VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDDVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSFADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ TVY +D+EA  LW++I+GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERLWATVYLDDDEAAGLWQEIAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMG 229
           +D+G    P G P  +E+  RY+E+WNLVFMQ E+         + R  LP+ +IDTGMG
Sbjct: 176 YDRGPEFGPEGGPIVNED--RYLEVWNLVFMQNERGEGTTKEDYEIRGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN 268
           +ER+A VLQ   N Y+IDL + +I          Y+  N
Sbjct: 234 VERIALVLQGVHNVYEIDLLRPVIDLVATRAPRPYDPEN 272


>gi|203287678|ref|YP_002222693.1| alanyl-tRNA synthetase [Borrelia recurrentis A1]
 gi|201084898|gb|ACH94472.1| alanyl-tRNA synthetase [Borrelia recurrentis A1]
          Length = 592

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 155/470 (32%), Positives = 259/470 (55%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+  GH  +   SLIP ND T++F  +GM P      G+  P    +
Sbjct: 1   MKLDELRAKYIDFFKSKGHCEIVGKSLIPDNDSTVLFNTAGMQPLVPYLLGEIHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VDVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKELSVEYSFEFLTSPHYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + + +LY++V++ D++         +W+K+ G+S D+I  ++   NFW  +   GPCGP 
Sbjct: 116 ISKDKLYVSVFEGDKDIPRDVKTADIWEKL-GISKDRIFYLSREHNFWGPVGNVGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EIF D G          +    +Y EIWN VFMQ+ + N      L +  +DTGMG+ER
Sbjct: 175 TEIFVDTGIDKCSNTCDITCSCGKYFEIWNNVFMQYNKDNDGNYEELKRKCVDTGMGIER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
             T LQ K++ YD D F+ +I+  E+++G  Y     +    R+I DH+++S F++AD  
Sbjct: 235 TITFLQGKSSVYDTDAFRPIIKQIEKISGKVYGDNLEDDRAIRIIADHIKASCFILADNF 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            +LP+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y E+ + K  I+
Sbjct: 295 SVLPSNVGQGYVLRRLIRRSIRYAKKLGMESHCLADLVDSVEDIYKSFYKEITEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             L  E+E+F KTL  G      ++  L   +++ GD++FKLYDT+G P +I +++    
Sbjct: 355 NELNIEEEKFFKTLRYGEQEFVKLIHQLS-SKLIPGDISFKLYDTYGFPYEITEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G + +D   F +  ++ +  ++  S  +  G      +   + + AT  +
Sbjct: 414 GFS-MDREGFEEHFKKHQEVSKKGSDKVFKGGLADCSYETTKLHTATHLL 462



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 98/231 (42%), Gaps = 10/231 (4%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
             + E V+         +  D +    +  G   +    +       +     +      
Sbjct: 370 YGEQEFVKLIHQLSSKLIPGDISFKLYDTYGFPYEITEELAIEYGFSMDREGFEEHFKKH 429

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
                     +    +          + +  H+ATHLLH AL  +LG HV Q GS IT  
Sbjct: 430 QEV-----SKKGSDKVFKGGLADCSYETTKLHTATHLLHKALQLVLGDHVRQKGSNITSQ 484

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
            LRFD +H   +T  E+K +ED VN  I   L V   IM+ EDA+  GA AL G KY D 
Sbjct: 485 RLRFDFSHPCKMTDDEIKKVEDIVNLQIKNKLSVKKSIMSLEDALVKGAIALFGEKYEDI 544

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V V  ++       S  +CGG HV++T E+    I  E +  +GIRRI AI
Sbjct: 545 VSVYEIDG-----FSIEVCGGPHVNNTSELGTFKIQKEQASSSGIRRIRAI 590


>gi|111115044|ref|YP_709662.1| alanyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|123145760|sp|Q0SNU2|SYA_BORAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110890318|gb|ABH01486.1| alanyl-tRNA synthetase [Borrelia afzelii PKo]
          Length = 594

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 155/470 (32%), Positives = 259/470 (55%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLDKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT  +  +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSEYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + + RLY++V++ D+E        K+W+ + G+  D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDRLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSINCNVTCSCGKYFEIWNNVFMQYNKDENGNYMELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD-- 288
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEFISGKIYGQKEDDDRCIRIISDHIKAACFILADSS 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T   S Y EL + K  I+
Sbjct: 295 GVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVETIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L +E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSTEEEKFFKTLFQGEQEFIKITRNLS-SKTIPGDIAFKLYDTYGFPYELTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID   FN+  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-DIDKSGFNEYFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 82/317 (25%), Positives = 122/317 (38%), Gaps = 21/317 (6%)

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           +G+   +  Q    +R   R+       G        L +         Y+ L   K   
Sbjct: 294 SGVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVETIYRSFYNELTEKKDFI 353

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF-YAEAGGQLG 529
           +      ++               I +   +  + + G     ++D   F Y        
Sbjct: 354 KKELSTEEEKFFKTLFQGEQEFIKITRN--LSSKTIPGDIAFKLYDTYGFPYELTEELAF 411

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G  I      +     +K                +    +          + +  H+A
Sbjct: 412 EYGFDIDKSGFNEYFKKHQKT-------------SKKGGDKVFKGGLADYTYETTKLHTA 458

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV Q GS IT + LRFD  HSK +T  E+K +ED VN  I  +L V
Sbjct: 459 THLLHKALQLVLGDHVKQKGSNITAERLRFDFVHSKKMTDDEIKKVEDIVNLQIKNSLSV 518

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              IM   +A   GA AL G KY++ V V  ++       S  +CGG HV +T E+    
Sbjct: 519 KKSIMELSEAREKGAMALFGEKYDNLVSVYEIDG-----FSLEVCGGPHVENTNELGTFK 573

Query: 710 IVSESSIRAGIRRIEAI 726
           I  E S  +GIRRI+AI
Sbjct: 574 IQKEQSSSSGIRRIKAI 590


>gi|297620181|ref|YP_003708286.1| alanyl-tRNA synthetase [Methanococcus voltae A3]
 gi|297379158|gb|ADI37313.1| alanyl-tRNA synthetase [Methanococcus voltae A3]
          Length = 936

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 203/956 (21%), Positives = 384/956 (40%), Gaps = 150/956 (15%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + +   + EF    GH  +  S ++       ++ T + +  F+   T G  KPV   
Sbjct: 60  TYNEMLKEYREFLHSEGHTPIKRSPVVAKRWRDDILLTIATIAVFQPWVTSGLVKPVENP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +T  Q C+R     ND+DNVGRT RH T F M  + +F       Y+ +R ++L +  +T
Sbjct: 120 LTIAQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFNTEDDFKYWTDRTVELCYKFMT 175

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K                            G+    I  I   +++W     G  GPC E+
Sbjct: 176 K---------------------------IGIEGKSITFI---ESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQF++        +P   +DTG G+ER   
Sbjct: 204 I------------------THGVELATLVFMQFKKVGD-TYEEIPLKIVDTGYGIERFVW 244

Query: 236 VLQEKTNNYD---------------------------------IDL-----FKHLIQASE 257
             Q  +N Y+                                 +D+      + L Q   
Sbjct: 245 ASQGTSNTYEAIFSNIINILKKNAGIGEINKKILDESAKLAGLMDIENVGDLRVLRQQVA 304

Query: 258 QVTGMKYEGNNI-----VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           +   M     +           I DH R  +F++ DGI+P+N   GY+ R ++R+ + Y 
Sbjct: 305 EKMNMDVNELDKVLSPLEYIYAITDHTRCLTFMLGDGIVPSNVKDGYLARLVLRKTLRYM 364

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
             +G T  +   ++     E+   YPEL++ K  I + L SE+ ++ +T+++G  ++  +
Sbjct: 365 EKVGITMSIN-DIVDLQLEELKENYPELMKMKKYIHDVLESEERKYAQTVNKGRGIVQRM 423

Query: 373 LSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           +    K  +  +  D    LYD+ GLP +++QDI+        +    N     +R    
Sbjct: 424 VQSNKKSSVSEITLDDLINLYDSKGLPPELVQDIIFEIN----ENEINNLKRIAERKGEL 479

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                +    +++I  ++ + +       ++  +     +         P       V  
Sbjct: 480 VSDDAIAEIKSKQIKINVPDNFYTIVAEKHEEEKSDVQNENIDSKKELPPVNVNGKSVEP 539

Query: 491 IVKAIVQQGEIVE---EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
                 +  + ++   + ++  +  V+ D+T FYAE GGQ  D G      +        
Sbjct: 540 TEFLFHRNSKQIDFKAKVLAVVEDHVILDKTLFYAEGGGQKYDIGTLSSIDVIDVQKQNN 599

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
                  V+H + +    +    +   I+++NR +L  NH+ATH+++ A + +LG+H+ Q
Sbjct: 600 ------VVYHKVSDVKSFKVGDMIYGKINWENRIKLMRNHTATHIINAAATQVLGNHIWQ 653

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
            GS +  +  R D+TH + IT  E+K IE   NDI+ + +P+    + R +A      ++
Sbjct: 654 TGSNVDTEKGRLDITHFERITRDEIKEIEKVANDIVLRAIPITCEFLERNEAEQRYGFSI 713

Query: 668 LG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                   D +R++S+   D     +  CGGTH  +T E+  + I+    I+ G+ R+E 
Sbjct: 714 YQGGVVPGDTLRIISIPDID-----TEACGGTHCENTLEVGYIKILKTERIQDGVERLEY 768

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL---QLN 782
            +G  +   +   ++ +   AS   V    +    E  +EE+++ +    + +    +L 
Sbjct: 769 SSGANSVGEVATIEDLVLDSASVFGVPAEQLPKTAERFFEEWKEQRKKIEELQKRVGELV 828

Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
             +L  S  K+   + +   I + D KEL +  D L   ++   I+++  +         
Sbjct: 829 KYELNNSFVKVGKFDVLVEKI-DADVKELMNTADNL---VKDDSIVVLLNNNGNILL--- 881

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
              +++    N   L R  A       GGG+ ++AQ  G    + ++    V  F+
Sbjct: 882 KRGDNV--EINMKTLIRQVA------KGGGKENLAQ--GKYTEEFEEIKNKVIEFI 927


>gi|203284140|ref|YP_002221880.1| alanyl-tRNA synthetase [Borrelia duttonii Ly]
 gi|201083583|gb|ACH93174.1| alanyl-tRNA synthetase [Borrelia duttonii Ly]
          Length = 592

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/470 (33%), Positives = 259/470 (55%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+  GH  +   SLIP ND T++F  +GM P      G+  P    +
Sbjct: 1   MKLDELRAKYIDFFKSKGHCEIVGKSLIPDNDSTVLFNTAGMQPLVPYLLGEIHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VDVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKELSVEYSFEFLTSPHYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + + +LY++V++ D++         +W+K+ G+S D+I  ++   NFW  +   GPCGP 
Sbjct: 116 ISKDKLYVSVFEGDKDIPRDVKTADIWEKL-GISKDRIFYLSREHNFWGPVGNVGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EIF D G          +    +Y EIWN VFMQ+ + N      L +  +DTGMG+ER
Sbjct: 175 TEIFVDTGIDKCSNTCDITCSCGKYFEIWNNVFMQYNKDNNGNYEELKRKCVDTGMGIER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
             T LQ K++ YD D F+ +I+  E+++G  Y     +    R+I DH+++S F++AD  
Sbjct: 235 TITFLQGKSSVYDTDAFRPIIKQIEKISGKVYGDNLEDDRAIRIIADHIKASCFILADNF 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            +LP+N G+GYVLRR++RRA+ YA+ LG     +  L+ ++     S Y E+ + K  I+
Sbjct: 295 SVLPSNVGQGYVLRRLIRRAIRYAKKLGMESHCLADLVDSVEDIYKSFYKEITEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             L  E+E+F KTL  G      ++  L   +++ GD++FKLYDT+G P +I +++    
Sbjct: 355 NELNIEEEKFFKTLRYGEQEFVKLIHQLS-SKLIPGDISFKLYDTYGFPYEITEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G + +D   F +  ++ +  ++  S  +  G      +   + + AT  +
Sbjct: 414 GFS-MDREGFEEHFKKHQEVSKKGSDKVFKGGLADCSYETTKLHTATHLL 462



 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 113/266 (42%), Gaps = 20/266 (7%)

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           ++     F+K +  +  +K    L  G    VK I    ++  + + G     ++D    
Sbjct: 345 EITEKKDFIKNELNIEEEKFFKTLRYGEQEFVKLI---HQLSSKLIPGDISFKLYDT--- 398

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y        +     G  +  +  +   K                     +         
Sbjct: 399 YGFPYEITEELAIEYGFSMDREGFEEHFKKHQEVSKKG---------SDKVFKGGLADCS 449

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            + +  H+ATHLLH AL  +LG HV Q GS IT   LRFD +H   +T  E+K +ED VN
Sbjct: 450 YETTKLHTATHLLHKALQLVLGDHVRQKGSNITSQRLRFDFSHPCKMTDDEIKKVEDIVN 509

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I   L V   IM+ EDA+  GA AL G KY D V V  ++       S  +CGG HV+
Sbjct: 510 LQIKNKLSVKKSIMSLEDALVKGAMALFGEKYEDIVSVYEIDG-----FSIEVCGGPHVN 564

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAI 726
           +T E+    I  E +  +GIRRI AI
Sbjct: 565 NTSELGTFKIQKEQASSSGIRRIRAI 590


>gi|305663561|ref|YP_003859849.1| alanyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304378130|gb|ADM27969.1| alanyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 914

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 186/929 (20%), Positives = 357/929 (38%), Gaps = 159/929 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
           +   +R  FL+FF+++GHE++    ++      L  T + +V F+  + +G   P    +
Sbjct: 60  SYREVRDLFLKFFERHGHEIIEPRPVVARWREDLYLTIASIVVFQPHVTSGLVPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R      D+D+VG T  RH T F M G+ +F       Y+ +  ++ A +   
Sbjct: 120 VIAQPCIRLE----DIDSVGYTLGRHMTNFIMGGHHAFNYPDKHIYWTDETVEYAREFFV 175

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +E  + +                               IT  +++W     G  GPC E+
Sbjct: 176 EELGIPEE-----------------------------EITFKESWWEGG--GNAGPCFEV 204

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFM + + ++     +P   +DTG G+ER+A 
Sbjct: 205 AV------------------GGLELATLVFMMY-RVSEGGYEEIPLKIVDTGYGIERIAW 245

Query: 236 VLQEKTNNYDI--------------------DLFKHLIQASEQVTGMKY----------- 264
            +Q+    +                      D+   + + + ++    Y           
Sbjct: 246 FVQKTPTAFHAVYGSLLTDFHKKLNISEPDRDILYAVARRAARIDPSNYSSILAIYEDIS 305

Query: 265 ------------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                       +  NI +   I+DH ++ + +++DGI+P+N G GY+ R ++RR++   
Sbjct: 306 RSMGVSVKEIEDQLKNIFDLYAILDHTKTIALMLSDGIVPSNSGEGYLARLVIRRSLRKL 365

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
             L   +  +  L+       G  YP +I+ +  I E +R E++++   + +   +    
Sbjct: 366 AKLNV-DIDLSELVSMQLGYWGDMYPRMIRYRDTILEMVRLEEDKYRGVISKLSTIAPRY 424

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           ++     + L       LYD+ G+P D++ + L  R    I++ S   ++   R      
Sbjct: 425 VNKSPSLDELV-----TLYDSQGIPPDLLAEELDKRFSYRINVPSNFYSIVASRHSRPKT 479

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                     +        +  T+ I ++      F                     + V
Sbjct: 480 VREYEKEELPRDVVERVSSFPETRRIFHEDPYRRVFR--------------------AKV 519

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
             ++                +V D T FY E GGQLGD G    +G  + +   +K    
Sbjct: 520 LGVIGD------------RYIVLDATAFYPEGGGQLGDRGILRVNGKTINVVSTKKIGNV 567

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           +      VE   + + M +   +D+  R +   +H+ATH+L  AL  +LG HV Q G+  
Sbjct: 568 VVHVVDSVEG--ISSGMEVDGEVDWGIRYRRMRHHTATHILLGALRRVLGDHVWQAGAEK 625

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--T 670
           T    R DVTH K  +  E++ IE   N ++ + + V    + R +A       L     
Sbjct: 626 TEFKARLDVTHYKMPSEDEIRRIEYLANRVVDEAIDVKIHYLPRNEAEKIYGFTLYQGGV 685

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                +RVV +   D        C GTHV +T E+  + I++   I  G+ R E +    
Sbjct: 686 PMEPTIRVVEIPGWDA-----QACFGTHVRNTSEVGGIKIINIDRIADGVIRFEYVVATA 740

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL----QLNVEDL 786
              +    ++KLKS+A  +  S  ++  R+E + +E    +++    +     QL    +
Sbjct: 741 LADYARSFEDKLKSMAKSVGSSVDDIDKRIETLVKEMNNYRMLIKMYRNEYIDQLVKRAI 800

Query: 787 SCHKI-ADVNFMSHIISEVDSKELKSVMDALQKKIQSG-IIMLVGISKEKKASVLIVVTE 844
               +  D+      IS  D + +K  +  ++   Q   +I    + ++ K  + I +  
Sbjct: 801 ETQDVYNDIKLYIARISINDRELIKEFL--IKSTTQEPRLIATALLEEQGKTYIEISLGR 858

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
               + +A  +     + +    GG + H
Sbjct: 859 IASQKIDAKQIVNELTRYIQTKAGGKKDH 887


>gi|167462223|ref|ZP_02327312.1| alanyl-tRNA synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 572

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 203/604 (33%), Positives = 329/604 (54%), Gaps = 41/604 (6%)

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RRA+ Y ++LG  +P M  L+PALC  MG  Y E+++ +  IE+ +R+E+ERF +TL
Sbjct: 1   RLLRRAVRYGKVLGMDKPFMYQLVPALCDVMGMYYTEIVEKQEFIEKIIRTEEERFHETL 60

Query: 363 DRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
             GL +L  +++   K  +  + G  AFKLYDT+G P+D+ +D    +G+  +D   F  
Sbjct: 61  SDGLEILSHLVAEARKKGMTQIGGQDAFKLYDTYGFPIDLTEDFAAEQGMT-VDKEGFEA 119

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           +++EQR RARA      S   +     L +    ++F+GY+ L                 
Sbjct: 120 SMQEQRERARAARQDTDSMNVQG--GPLADFTDKSEFVGYNDL----------------- 160

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                  V + + A++    +V+    G+  +VV D+TPFYAE+GGQ+ D G        
Sbjct: 161 ------VVPAKIIALMHNNTMVDIVNEGEICQVVLDRTPFYAESGGQVSDKGTIRYGETL 214

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           L++ +V K   G  VH  +VE+G  R       ++D   R  +  NH+ATHLLH AL+ +
Sbjct: 215 LRVEEVGKAPHGQHVHTVLVEKGTARVGAETEASVDPSLRGDIVKNHTATHLLHKALNEV 274

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +    LRFD +H   IT  EL+ +E  VN+ I QN+PV+ ++M  ++A 
Sbjct: 275 LGEHVNQAGSLVAQQRLRFDFSHFGSITEEELQEVERKVNEQIWQNIPVIIKLMPIDEAK 334

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY   V          G +S  LCGG HV++T EI    IVSES I +G+
Sbjct: 335 AMGAMALFGEKYGKVV-----RVVRVGDYSLELCGGCHVANTAEIGQFKIVSESGIGSGV 389

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+ G+ A +++  Q   LK  A  LK    +V  RV+ I  + ++L       + +
Sbjct: 390 RRIEAVAGKHAYTYMEDQIRLLKETAVLLKSKVADVPKRVDSILSQMKELNREIESLRSK 449

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L+  +         ++  +  ++  ++  D   L+ + D ++ +I SG+I+L   S + K
Sbjct: 450 LSHIEAGSLTDQIKEVGGIKLLAAEVNAADMDSLRQLADEMKAQIGSGVIVLGAASGQ-K 508

Query: 836 ASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +++  VT+DL  +  +A  + + +A + GGGG GGRP MAQ+GG + +K  +A+  V +
Sbjct: 509 VNLVAAVTQDLTKKGLHAGQIVKAAASICGGGG-GGRPDMAQAGGKDPSKLKEALLYVET 567

Query: 895 FLKK 898
           ++++
Sbjct: 568 YIQQ 571


>gi|119953017|ref|YP_945226.1| alanyl-tRNA synthetase [Borrelia turicatae 91E135]
 gi|119861788|gb|AAX17556.1| alanyl-tRNA synthetase [Borrelia turicatae 91E135]
          Length = 593

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/470 (34%), Positives = 259/470 (55%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  ++EFF+  GH  +   SLIP ND T++F  +GM P      G+  P    +
Sbjct: 1   MKLDELRKKYIEFFKSKGHCEIAGKSLIPDNDSTVLFNTAGMQPLVPYLLGEIHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VDVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKELSVKYSFEFLTSPDYLN 115

Query: 120 LDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + + RLY++V++ DE      +   +W+ + G+  D+I  ++   NFW  +   GPCGP 
Sbjct: 116 ISKDRLYVSVFEGDENIPRDTKTASVWESL-GIPKDRIFYLSREHNFWGPVGNVGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EIF D G+         +    +Y EIWN VFMQ+++        L +  +DTGMG+ER
Sbjct: 175 TEIFVDTGKEKCSNECDITCSCGKYFEIWNNVFMQYKRDENGNYEELNRKCVDTGMGIER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG- 289
             T LQ K++ YD D FK +I   E+++G  Y  N  +  + R+I DH+++S F++AD  
Sbjct: 235 TITFLQGKSSVYDTDAFKPIIDKIEKISGKIYGQNLEDDKSIRIIADHIKASCFILADNF 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            +LP+N G+GYVLRRI+RRA+ YA+ LG    ++  L+  +     S Y EL + K  I+
Sbjct: 295 AVLPSNVGQGYVLRRIIRRAIRYAKKLGMESHVLADLVDPVEEIYKSFYKELTENKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             L +E+++F KTL  G      ++ HL   +++ G++AFKLYDT+G P +I +++    
Sbjct: 355 AELNTEEKKFFKTLRHGEQEFIKLIQHLS-SKLIPGEIAFKLYDTYGFPYEITEELATEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G + ID   F +   + R  ++     +  G      +   + + AT  +
Sbjct: 414 GFS-IDKTGFEEHFRKHRKVSKKGGDKVFKGGLADCTYETTKLHTATHLL 462



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 118/289 (40%), Gaps = 21/289 (7%)

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
           G    +   L +         Y  L  +K   +      +K               ++Q 
Sbjct: 322 GMESHVLADLVDPVEEIYKSFYKELTENKDFIKAELNTEEKKFFKTLRHGEQEFIKLIQ- 380

Query: 499 GEIVEEAVSGQKVEVVFDQTPF-YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             +  + + G+    ++D   F Y        + G +I      +     +K        
Sbjct: 381 -HLSSKLIPGEIAFKLYDTYGFPYEITEELATEYGFSIDKTGFEEHFRKHRKV------- 432

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                   +    +          + +  H+ATHLLH AL  +LG HV Q GS IT + L
Sbjct: 433 ------SKKGGDKVFKGGLADCTYETTKLHTATHLLHKALQLVLGDHVRQKGSNITAERL 486

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H   +T  E+K +ED VN  I   L V   +M+ +DA+A GA AL G KY + V 
Sbjct: 487 RFDFSHPYKMTDDEIKRVEDMVNLQIKNKLSVNRTVMSLDDALAKGAMALFGEKYEEIVS 546

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V  ++       S  +CGG HV +T E+ +  I  E +  +G+RRI+ I
Sbjct: 547 VYEIDG-----FSIEVCGGPHVKNTSELGIFKIQKEQASSSGVRRIKGI 590


>gi|216264058|ref|ZP_03436052.1| alanyl-tRNA synthetase [Borrelia afzelii ACA-1]
 gi|215980102|gb|EEC20924.1| alanyl-tRNA synthetase [Borrelia afzelii ACA-1]
          Length = 594

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/470 (32%), Positives = 259/470 (55%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLDKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT  +  +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSEYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + + RLY++V++ D+E        K+W+ + G+  D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 ISKDRLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSINCNVTCSCGKYFEIWNNVFMQYNKDENGNYMELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD-- 288
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEFISGKIYGQKEDDDRCIRIISDHIKAACFILADSS 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T   S Y EL + K  I+
Sbjct: 295 GVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVETIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L +E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSTEEEKFFKTLFQGEQEFIKITRNLS-SKTIPGDIAFKLYDTYGFPYELTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID   FN+  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-DIDKSGFNEYFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 82/317 (25%), Positives = 122/317 (38%), Gaps = 21/317 (6%)

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           +G+   +  Q    +R   R+       G        L +         Y+ L   K   
Sbjct: 294 SGVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVETIYRSFYNELTEKKDFI 353

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF-YAEAGGQLG 529
           +      ++               I +   +  + + G     ++D   F Y        
Sbjct: 354 KKELSTEEEKFFKTLFQGEQEFIKITRN--LSSKTIPGDIAFKLYDTYGFPYELTEELAF 411

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G  I      +     +K                +    +          + +  H+A
Sbjct: 412 EYGFDIDKSGFNEYFKKHQKT-------------SKKGGDKVFKGGLADYTYETTKLHTA 458

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV Q GS IT + LRFD  HSK +T  E+K +ED VN  I  +L V
Sbjct: 459 THLLHKALQLVLGDHVKQKGSNITAERLRFDFVHSKKMTDDEIKKVEDIVNLQIKNSLSV 518

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              IM   +A   GA AL G KY++ V V  ++       S  +CGG HV +T E+    
Sbjct: 519 KKSIMELSEAREKGAMALFGEKYDNLVSVYEIDG-----FSLEVCGGPHVENTNELGTFK 573

Query: 710 IVSESSIRAGIRRIEAI 726
           I  E S  +GIRRI+AI
Sbjct: 574 IQKEQSSSSGIRRIKAI 590


>gi|146304401|ref|YP_001191717.1| alanyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
 gi|205830147|sp|A4YH91|SYA_METS5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145702651|gb|ABP95793.1| alanyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
          Length = 904

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 202/895 (22%), Positives = 367/895 (41%), Gaps = 156/895 (17%)

Query: 18  NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQKCVRAGGKHND 76
           NGHE++P   ++      L  T + +V F+   T G   P    +   Q C+R     +D
Sbjct: 76  NGHEIIPPKPVLARWREDLYLTIASIVDFQPYITSGISPPPANPLVVSQPCIRM----DD 131

Query: 77  LDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           +DNVG T  RH T FEM G+ +F       Y+K+  +  A +  TKE  +    L     
Sbjct: 132 VDNVGITFGRHLTTFEMGGHHAFNYPDKFLYWKDETVAYAKEFFTKEMGI-PEEL----- 185

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190
                                  +   +++W     G  GP  E+               
Sbjct: 186 -----------------------LNFKESWWEGG--GNAGPSFEVTV------------- 207

Query: 191 SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI---- 246
                  +E+  LVFMQ+E     E   L    +DTG G+ER+A   Q+    +      
Sbjct: 208 -----GGLELATLVFMQYE-IRDGEYVPLKLKIVDTGYGIERLAWFTQKTPTAFHAIYGE 261

Query: 247 ----------------DLFKHLIQASEQVTGMKYEGNNIVNHRV---------------- 274
                           D+ K   + + ++             +V                
Sbjct: 262 LVDKFLEKLGLPSLNPDMLKVASRFAGRIDPDVPSTIQGHREQVAKAMGLPVKEVSEELT 321

Query: 275 -------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
                  ++DH ++ + ++ DG++P++ G GY+ R ++RRA+   +LL     L   L+ 
Sbjct: 322 RAARVFQVLDHTKTIALMLGDGLVPSSGGEGYLGRLLIRRALRTLKLLNVDVRLS-ELVD 380

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA 387
                 G  + +L++ +  I + +  E E+F + L+R       V+S L K + +  +  
Sbjct: 381 MQIGFWGKDFTQLVRNRDYILDAVNLEQEKFNEILNRMS----SVVSSLTKKKEIGVEDL 436

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
            +LYD+ G+P D+M + + ++GL      +F   + ++   A        +    ++   
Sbjct: 437 IQLYDSQGIPPDLMAEEMRSKGLKVEVPHNFYSIVAKRHQSAPVKKEWDTTKLPPEVVKQ 496

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
           +K+    T+ + Y       F                             +G IV+    
Sbjct: 497 VKD-LPPTEKLYYKDQYARNF-----------------------------EGVIVKSLGK 526

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
                +V D+T FY E GGQLGD G  + DG R+++ D QK  +   V H +      + 
Sbjct: 527 ----YLVLDRTVFYPEGGGQLGDQGWLLLDGQRVKVVDTQKVGD--VVVHVLEREISAKE 580

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +   ID+  R ++  +H+ TH++  A   +LG HV Q G+  TP+  R D+TH + +
Sbjct: 581 GDKVKGEIDWVRRFRMMRHHTGTHVVLAAAKKLLGDHVWQAGAEKTPEKARLDITHHRNL 640

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  E+K IE+  N ++    PV    +NR +A      ++      ++  +  +E +D  
Sbjct: 641 TREEVKRIEEMANLVVDDRRPVTPFEINRTEAETKYGVSIYEGGVPNKAVIRLLEIKDW- 699

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 CGGTHV++T +I  + IV+   I+ GI R+E + G    S+    ++KL+ LAS
Sbjct: 700 --DVESCGGTHVANTADIGGIKIVNVEKIQDGIIRLEYVAGDVISSYAGNLEDKLEGLAS 757

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            L+ S   +  RVE++ EE  +++ + A   ++ L    + +    +  V  +  I+  +
Sbjct: 758 KLETSTSQIESRVEKLKEENERMKELIAFYRRQYLDDLEKHVETRNVGKVKIV--ILPSL 815

Query: 805 DSKEL-KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             ++L +  M  L      G++++       K  + I  ++DL       +L + 
Sbjct: 816 KDEDLEREAMRRLTST--QGVVVIHVNQVNGKLQIEIGTSKDLNVSTVVTELVKA 868


>gi|15921648|ref|NP_377317.1| alanyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|21264016|sp|Q971J4|SYA_SULTO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15622435|dbj|BAB66426.1| 904aa long hypothetical alanyl-tRNA synthetase [Sulfolobus tokodaii
           str. 7]
          Length = 904

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 200/898 (22%), Positives = 353/898 (39%), Gaps = 146/898 (16%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL+FF+K GH ++P   ++      L  T + +V F+   T G   P    +
Sbjct: 62  TVREARQKFLKFFEKKGHTIIPPKPVLARWREDLYLTIASIVDFQPFVTSGIVPPPANPL 121

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R      D+DNVG T  RH T FEM  + +F       Y+K+  ++L+ +   
Sbjct: 122 VLSQPCIRLE----DVDNVGVTFGRHLTTFEMAAHHAFNYPDKQIYWKDETVELSKEFFV 177

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +E                           G+  +    +   +++W     G  GP  E+
Sbjct: 178 EE--------------------------IGIPEE---ELNYKESWWEGG--GNAGPSFEV 206

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E         L    +DTG G+ER+A 
Sbjct: 207 TV------------------GGLELATLVFMQYE-IKDGNYVPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDI--------------------------------------DLFKHLIQASE 257
             Q+    +                                        +  K   +   
Sbjct: 248 FTQKTPTAFHAIYGNLVYTFFNKIGAPLVDDELLKTAAILAGRIDPDKPETIKRHREEVA 307

Query: 258 QVTGMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           +  G+  +  +    R      ++DH ++ + ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KKLGLDLKYVDQELTRAARVFQVLDHTKTIALMLADGLVPSNSGEGYLGRLLIRRALRVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLLG    L   L+          +P+L++ K  I + +  E ERF +TL +    +   
Sbjct: 368 RLLGSDIKL-YELVKEQIEYWKEDFPQLLKNKDYILDVVNLEQERFNETLSK----ISLT 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L + + ++ D   KLYD++G+P D++ + +          + +N      +      
Sbjct: 423 ASSLSRRKEISVDDLVKLYDSNGIPPDLLVEEIRKINPEIKVEVPYNFYGLVAKRHQTVP 482

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                     K    L E    T+ + Y+      F                    ++ V
Sbjct: 483 LKDTKKEKLPKDVIDLAENLPPTKKLYYEDQYKRSF--------------------TAKV 522

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
            ++ +               +V DQT FY E GGQ+GDTG    +          +K + 
Sbjct: 523 VSVYKN-------------YLVLDQTTFYPEGGGQIGDTGIIKDEKGNTYQVVDTQKVKD 569

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           +   H + +   L+    +   ID+Q R ++  +H+ TH++  A   +LG HV Q G+  
Sbjct: 570 VI-FHILDKEPSLKEGDEVYGEIDWQRRYRIMKHHTVTHVILSAARKVLGEHVWQAGAEK 628

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           TP   R D+TH K  T  E+K IED  N II     V   I+NR +A      ++     
Sbjct: 629 TPQKGRLDITHYKLPTEEEIKKIEDLANYIINDRRSVRPLIINRTEAEMKYGVSIYAGGV 688

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            +   V  +E +D        CGGTH+S+T EI  L I++   I+ G+ R+E + G    
Sbjct: 689 PEGADVRLIEIKDW---DIEGCGGTHLSNTSEIGALKIINVEKIQDGVIRLEYVAGDVVA 745

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            +   +++KLK ++  L  S   +  R++   EEY++ + +  + +  +  E  +  K  
Sbjct: 746 QYARQEEDKLKEISRQLSTSPEQIEVRLKRFLEEYKEKEELLNQYRKMMLQEIENISKKE 805

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
            VN ++  I  +  +EL+          Q  I++ +          +    +  +D+ 
Sbjct: 806 TVNGVTIYIINLFDEELRKEAMRKLTMNQKSIVVNISNKGNNNVVEIATSNDLRVDKI 863


>gi|219684565|ref|ZP_03539508.1| alanyl-tRNA synthetase [Borrelia garinii PBr]
 gi|219671927|gb|EED28981.1| alanyl-tRNA synthetase [Borrelia garinii PBr]
          Length = 594

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/470 (32%), Positives = 257/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLDKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+  D+I  ++   NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKAHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEVISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++    GS Y EL + K  I+
Sbjct: 295 VVSPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYGSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L +E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSTEEEKFFKTLFQGEQEFIKITKNLS-SKTIPGDIAFKLYDTYGFPYEVTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID + F++  ++ +  ++  S  +  G      +   + + AT  +
Sbjct: 414 GF-NIDKLGFDEFFKKHQKASKKGSDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 75/268 (27%), Positives = 111/268 (41%), Gaps = 21/268 (7%)

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y+ L   K   +      ++               I +   +  + + G     ++D   
Sbjct: 343 YNELTEKKDFIKKELSTEEEKFFKTLFQGEQEFIKITKN--LSSKTIPGDIAFKLYDTYG 400

Query: 520 F-YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           F Y        + G  I      +     +KA               +    +       
Sbjct: 401 FPYEVTEELAFEYGFNIDKLGFDEFFKKHQKA-------------SKKGSDKVFKGGLAD 447

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
              + +  H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ 
Sbjct: 448 YTYETTKLHTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEI 507

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I  +L V   IM   +A   GA AL G KY++ V V  ++       S  +CGG H
Sbjct: 508 VNLQIKNSLSVKKSIMELSEAQKKGAMALFGEKYDNLVSVYEIDG-----FSLEVCGGPH 562

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V +T E+    I  E S  +GIRRI+AI
Sbjct: 563 VENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|219685840|ref|ZP_03540648.1| alanine--tRNA ligase [Borrelia garinii Far04]
 gi|219672614|gb|EED29645.1| alanine--tRNA ligase [Borrelia garinii Far04]
          Length = 594

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/470 (32%), Positives = 257/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLDKLRKKYIDFFKSKKHYEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+  D+I  ++   NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKAHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRMEVISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++    GS Y EL + K  I+
Sbjct: 295 VVSPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYGSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L +E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSTEEEKFFKTLFQGEQEFIKITKNLS-SKTIPGDIAFKLYDTYGFPYEVTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID + F++  ++ +  ++  S  +  G      +   + + AT  +
Sbjct: 414 GF-NIDKLGFDEYFKKHQKASKKGSDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/268 (27%), Positives = 110/268 (41%), Gaps = 21/268 (7%)

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y+ L   K   +      ++               I +   +  + + G     ++D   
Sbjct: 343 YNELTEKKDFIKKELSTEEEKFFKTLFQGEQEFIKITKN--LSSKTIPGDIAFKLYDTYG 400

Query: 520 F-YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           F Y        + G  I      +     +KA               +    +       
Sbjct: 401 FPYEVTEELAFEYGFNIDKLGFDEYFKKHQKA-------------SKKGSDKVFKGGLAD 447

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
              + +  H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ 
Sbjct: 448 YTYETTKLHTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEI 507

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I  +L V   IM   +A   GA AL G KY++ V V  +        S  +CGG H
Sbjct: 508 VNLQIKNSLSVKKSIMELSEAQKKGAMALFGEKYDNLVSVYEIGG-----FSLEVCGGPH 562

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V +T E+    I  E S  +GIRRI+AI
Sbjct: 563 VENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|70607199|ref|YP_256069.1| alanyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|73920796|sp|P35029|SYA_SULAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68567847|gb|AAY80776.1| alanyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
          Length = 907

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/917 (22%), Positives = 359/917 (39%), Gaps = 162/917 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH ++P   ++      L  T + +V F+   T G  KP    +
Sbjct: 62  TVRESREKFLRFFEKRGHTIVPPKPVVAKWRDDLYLTIASIVDFQPFVTSGLAKPPANPL 121

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R      D+DNVG T  RH T FEM  + +F       Y+K+  +  A +  T
Sbjct: 122 VVSQPCIRLE----DVDNVGITFGRHLTTFEMAAHHAFNYPDKQIYWKDETVAFAKEFFT 177

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +E  +           ED+                   +   +++W     G  GPC E+
Sbjct: 178 EELGI----------PEDQ-------------------LNFKESWWEGG--GNAGPCFEV 206

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E    Q+   L    +DTG G+ER+A 
Sbjct: 207 TV------------------GGLELATLVFMQYE-IRGQDYVPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDI--------------------------------------DLFKHLIQASE 257
             Q     +                                        +      +   
Sbjct: 248 FTQRTPTAFHAIYGNLVSSFYKKIGVGEVNNELLKAAAIYAGRIDPDIKETITAHREHLA 307

Query: 258 QVTGMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           +  G+  +  N    R      ++DH ++ + ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KQLGLDLKYVNEELTRAARVFQVLDHTKTIALMLADGLVPSNSGEGYLGRLLIRRALRVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLLG    L   L+          +P++++ K  I + + +E+E++  T+ +    +  +
Sbjct: 368 RLLGSDVKL-HELIKDQIDYWKEDFPQMLKNKDYIVDAVINEEEKYNDTISK----IPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIM--QDILCARGLAGIDIISFNQALEEQRSRAR 430
           LS L K   ++ D    +YD++G+  D++  +       +      +F   + ++   A 
Sbjct: 423 LSTLSKKSKVDLDELINIYDSNGISPDLILDEARKRNININVEIPHNFYSIVAKKHQNAL 482

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                      E I     +K   T  + Y       F                    ++
Sbjct: 483 VRENRKDKIPKEVIDEINNKKIEPTVPLYYKDQYLRTF--------------------NA 522

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
            V    +               +V DQT FY E GGQ+GDTG         Q   +  + 
Sbjct: 523 KVLLNYKN-------------FLVLDQTTFYPEGGGQIGDTGIIRSIEGNKQAKVIDTQK 569

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
               + H + +         +   ID+Q R ++  +H+ TH++  A   +LG H  Q G+
Sbjct: 570 YKGVIVHILDKDSPFIQGEQVYGEIDWQRRYRIMKHHTVTHVILSATRRVLGEHAWQAGA 629

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
             T    R DVTH K  T  E++ IED  N II     V    + R +A      ++   
Sbjct: 630 EKTEYKGRLDVTHYKLPTEEEIRKIEDFANYIINDRRKVRPLYIERTEAEMKYGVSIYAG 689

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G      +R++ +E  D        CGGTH+ +TGEI  + IV+   ++ G+ R+E + G
Sbjct: 690 GIPEGSEIRLIEIENWD-----IEGCGGTHLINTGEIGGVKIVNVEKLQDGVIRLEYVAG 744

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLS 787
               ++   QDEKL  ++  L      +  R+++  EEY  LQ +  K RK+ L+     
Sbjct: 745 DMVSNYARQQDEKLNEISKLLNSPVSQINVRLKKHLEEYENLQNLLDKYRKIVLDRIQEI 804

Query: 788 CHKIADVNFMSHII--SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
             +I+ VN ++  I    +D + +K VM  +    Q+   +++ I  +   +V I  ++D
Sbjct: 805 AERIS-VNGITIYILRDFIDEQLIKEVMRKITSNNQN---IVISIRGKDTKNVEIATSKD 860

Query: 846 LLDRFNAVDLARLSAKV 862
                    +     K+
Sbjct: 861 ----IKVDKIVDELRKI 873


>gi|312211276|emb|CBX91361.1| similar to alanyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 925

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 225/855 (26%), Positives = 362/855 (42%), Gaps = 134/855 (15%)

Query: 85  RHHTFFEMLGNF------SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE------ 132
           RHH+F             SFG YFK+ AI  AW+LLT+ F LD  R+Y+T ++       
Sbjct: 21  RHHSF-------VPPSSASFGDYFKKEAIGYAWELLTEVFGLDPNRIYVTYFEGYAPSGL 73

Query: 133 --DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG--LP 188
             D+EA  L  +  G++ D I+     D+F  M + GPCGPC E+ +   E I G     
Sbjct: 74  GPDDEAKDL-LREIGVADDHIVAGNIKDDFREMGDQGPCGPCIELHY---ELIGGRNATH 129

Query: 189 GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248
             +++G   IEIW  VF+Q+ ++  +   + P   IDTG+G ER+ +VLQ KT+NYD DL
Sbjct: 130 LVNQDGPDVIEIWIDVFVQYNREADKSLRLPPSKHIDTGLGFERLLSVLQNKTSNYDTDL 189

Query: 249 FKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           F  L    ++V          G++        +R + DH+R+S F I+DG++P N GRGY
Sbjct: 190 FTPLFDKIQEVIGACSYRGRFGIEDTDGIDTAYRAVADHVRTSVFAISDGVIPNNVGRGY 249

Query: 300 VLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           ++RR +RR   Y R     E       ++P +   MG  +PE+ +           E E 
Sbjct: 250 IVRRTVRRGAGYGRKYLNAELGSFFSKIVPTVIEHMGDTFPEIRR----------KETEF 299

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
                ++ +       S       L+G   ++LYD +G P+D+ + I   +GL   D   
Sbjct: 300 KEAMFNKYVQACQSEGSKY-----LHGAYVWRLYDIYGFPIDLTKLIAEEQGLHIKDEEV 354

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
                 E++  ++     L S    KI  S +   G TQ                     
Sbjct: 355 SAAQRGEKKVNSQTTVHDLASIALRKI--SKRSDTGDTQ--------------------- 391

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
               +         +           E   G++  V+  +T FYA++GGQ  DTG  + D
Sbjct: 392 --GHLLQQKVCQKHL-----------EVPQGEEFGVLLHKTNFYAKSGGQQFDTGRLVID 438

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            +        +  +G  +H   ++ G L     L+   D   R+ + +NH+ TH+L+ AL
Sbjct: 439 NLAELDVRNVQSYKGYVLHTGFLKYGSLAVGDELLAEYDESRRQPIRMNHTGTHILNFAL 498

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ-NLPVVTRIMNR 656
             +LG  V Q+GS + P+ LRFD +H   +   EL+ IE+  +  I    L   + +   
Sbjct: 499 REVLGKEVEQHGSLLAPEKLRFDFSHKTGVIDEELERIEEISDKYIKDGKLLFASDVNLS 558

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYED-----------GGVHSSALCGGTHVSSTGEI 705
                 G  A+LG    D VRVVS+                  +S   CGGTHV  T E+
Sbjct: 559 TARRKQGVRAVLGETCLDPVRVVSIGMPVENLVSDVASKGWWKYSIEFCGGTHVERTSEV 618

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLM--------------------GQDEKLKSL 745
             L ++ E  I  GIRRI A+TGQ A                          +++++K  
Sbjct: 619 QELTVLEEYGIAKGIRRIVAVTGQDALEARRVASSFEAESLNPIEHMAFSFEKEKRVKEA 678

Query: 746 ASFL----------KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              L          K     +   V+   +E +++Q       +QL            V+
Sbjct: 679 QLQLARIAIPTLTKKALTKRLEKVVKTTLKEQKEVQRHQFNDAIQLVDTHFE-QNSNSVS 737

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS-KEKKASVLIVV-TEDLLDRFNAV 853
           F++++ S+  ++ + + +  +  +     + L+G+    +K +    V  E      NA 
Sbjct: 738 FVANLPSKSSARTISAAVKHISNQNYGKSVYLIGVDSATEKVAHGCYVAPEHSSKGLNAN 797

Query: 854 DLARLSAKVLGGGGG 868
           +     A  LGG  G
Sbjct: 798 EWVAQVAGALGGKQG 812



 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 4  VSSIRTTFLEFFQKNGHELLPSSS 27
             +R TFL+FF++  H  +P SS
Sbjct: 7  AKKVRETFLDFFKQRHHSFVPPSS 30


>gi|51598481|ref|YP_072669.1| alanyl-tRNA synthetase [Borrelia garinii PBi]
 gi|59798511|sp|Q662E4|SYA_BORGA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51573052|gb|AAU07077.1| alanyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 594

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/470 (32%), Positives = 256/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLDKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+      E  K+W+ + G+  D+I  ++   NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQKIPCDTETAKVWESL-GIPKDRIYYLSKAHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFIPIIKRIEVISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T  GS Y EL + K  I+
Sbjct: 295 VVSPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSIETIYGSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L +E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSTEEEKFFKTLFQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID + F++  ++ +  ++     +  G      +     + AT  +
Sbjct: 414 GF-NIDKVGFDEYFKKHQKTSKKGGDKVFKGGLADYTYETTRLHTATHLL 462



 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +          + +  H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +
Sbjct: 437 GDKVFKGGLADYTYETTRLHTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKM 496

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  E+K +E+ VN  I  +L V   IM   +A   GA AL G KY++ V V  ++     
Sbjct: 497 TDDEIKKVEEIVNLQIKNSLSVKKSIMELSEAQKKGAMALFGEKYDNLVSVYEIDG---- 552

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 553 -FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|224532246|ref|ZP_03672878.1| alanyl-tRNA synthetase [Borrelia valaisiana VS116]
 gi|224511711|gb|EEF82117.1| alanyl-tRNA synthetase [Borrelia valaisiana VS116]
          Length = 594

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/470 (32%), Positives = 256/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLEKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLTHLTFFEMLGNWSLGAYFKEYSVRCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIYYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TVAFLQGKSSVYDTDAFIPIIKRIEFISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T   S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVETIYRSFYDELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L +E+E+F KTL +G      +  +L   + + G++ FKLYDT+G P ++ +++    
Sbjct: 355 KELSTEEEKFFKTLFQGEQEFIKITRNLP-SKTIPGNIVFKLYDTYGFPYEVTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID + F++  +  +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NIDKLGFDEYFKNHQKISKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 78/316 (24%), Positives = 116/316 (36%), Gaps = 19/316 (6%)

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +   +  Q    +R   R+       G        L +         YD L   K   
Sbjct: 294 SVVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVETIYRSFYDELTEKKDFI 353

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           +      ++               I +     +        ++       Y        +
Sbjct: 354 KKELSTEEEKFFKTLFQGEQEFIKITRN-LPSKTIPGNIVFKLYDTYGFPYEVTEELAFE 412

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G  I      +     +K                +    +          + +  H+AT
Sbjct: 413 YGFNIDKLGFDEYFKNHQKI-------------SKKGGDKVFKGGLADYTYETTKLHTAT 459

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +ED VN  I  +L V 
Sbjct: 460 HLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEDIVNLQIKNSLSVK 519

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM   +A   GA AL G KY++ V V  ++       S  +CGG HV +T E+    I
Sbjct: 520 KSIMELSEARERGAIALFGEKYDNLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKI 574

Query: 711 VSESSIRAGIRRIEAI 726
             E S  +GIRRI+AI
Sbjct: 575 QKEQSSSSGIRRIKAI 590


>gi|161527876|ref|YP_001581702.1| alanyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
 gi|205830161|sp|A9A565|SYA_NITMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160339177|gb|ABX12264.1| alanyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
          Length = 889

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 205/935 (21%), Positives = 349/935 (37%), Gaps = 179/935 (19%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTTVQKCVRA 70
           EFF KN H  +    ++      L FT + +V F+ +   +   +     +   Q C+R 
Sbjct: 81  EFFVKNNHTSVSRYPVVCRWRDDLYFTIASVVDFQRVMGSKVVFEFPANPLVVPQTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFS---FGGYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S    GGY+K+  + L + LLT++F +++  +  
Sbjct: 140 ---FKDLENVGVTGRHFSSFCMIGQHSVPDLGGYWKDECVDLDYRLLTEQFGINKDEV-- 194

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
            V+ ED                           W+    G  GP  E F           
Sbjct: 195 -VFVED--------------------------VWAGG--GSFGPSLEYFV---------- 215

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI- 246
                   + +E+ N VF +F Q    +   L +  ID G GLER A +       YD  
Sbjct: 216 --------QGLELGNAVFTEF-QGELGKHTTLDQRVIDMGAGLERFAWITMGTPTAYDCC 266

Query: 247 ------------------DLFKHLIQASEQVTGMKYEGNNIVN----------------- 271
                             ++ +       +      + N +                   
Sbjct: 267 FGPINEKLFGTIGIDSDSEILRKYFTEIAKEIDHYDDLNQVRRLAVKNAGITDEQMQKMI 326

Query: 272 -----HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
                  +I DHLR+  F I DG LP+N G GY LR ++RR       L   +  +  L+
Sbjct: 327 TPLEGMYLIADHLRTLIFAITDGALPSNVGGGYNLRMMLRRINATISKLNL-KLNIDDLI 385

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
                 +   YPEL + +  ++  L+ E  R+ ++     V +      + +    + D 
Sbjct: 386 DLHVDYLKDTYPELDEKRDDVKSILKLESARYEESK----VHMKKKADKIKEKGAPSVDE 441

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
               Y++ G+  + ++              SF   L +             S   + I  
Sbjct: 442 LITYYESDGITPEYLK----EVDAISEIPSSFYSKLSDLHQ----------SDKKKAIAE 487

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
              E    T+ + Y                      D     S+ V  ++          
Sbjct: 488 LPLEGLPETETLFY---------------------QDDPMEFSAKVLKVIDD-------- 518

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
                 +V D+T FYA  GGQ  D G   G  +             +       E G+ +
Sbjct: 519 -----MIVLDRTSFYARGGGQEPDFGSIAGFKVINVDKHADIIVHQL-------EGGVPK 566

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R  ++ NH++TH+++ +   +LGS + Q+ +    D  R D+TH   
Sbjct: 567 EGETVSCKVDETRRSNITKNHTSTHIINASSRKVLGSWIWQHSAFKDDDHARLDITHHSS 626

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYE 684
           +++ E++ IED  ND+I +N PV     +R  A       +          VR+VS+E +
Sbjct: 627 LSNDEVQKIEDEANDMIKKNYPVKINYYDRGTAEQKYGFRIYQGGVVPVKSVRIVSIEDK 686

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        CGGTHV  TG+I L+ I     I+ G+ R+E ++G  A  +   Q+++ K 
Sbjct: 687 D-----IEACGGTHVKKTGDIELIKITKTKRIQDGVVRLEFVSGPNAFEYEKQQEQESKR 741

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADV-NFMSHII 801
                K  +     ++E+  EE +    + I    +  L  ED+    I           
Sbjct: 742 -----KAEEAVAKEQLEKQREENKSKAREKIPVLLEKVLAGEDVESDGINTKGKLCFTAS 796

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           S+ D    ++    L  K         G+ +    ++ ++V        NA ++A+  A 
Sbjct: 797 SDYDDYFHQNFGKKLVGK--DSTAAFCGVFEAG-PTIRVMVFSGEQSGVNAGEIAKKIAS 853

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +L GG GGG    AQ GG + +K D+AI+   S +
Sbjct: 854 IL-GGSGGGDAKFAQGGGKDTSKKDEAISKAKSMI 887


>gi|254574772|pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
           Oligomerization Domain
 gi|254574773|pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
           Oligomerization Domain
 gi|254574774|pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
           Oligomerization Domain
          Length = 752

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 184/795 (23%), Positives = 323/795 (40%), Gaps = 168/795 (21%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVY 58
            +  +R  FL FF+K+    H  +    ++P     ++   + ++ F+    +G+  P  
Sbjct: 58  TLDEMREKFLRFFEKHEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +   Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +                                 IT  +N W+    G  GP  
Sbjct: 174 FTKELKMKPED-----------------------------ITFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------------QERFILPK 221
           E+ +                  R +E+  LVFMQ+++  +            ++   +  
Sbjct: 203 EVLY------------------RGLEVATLVFMQYKKAPENAPQDQVVVIKGEKYIPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHL-------------------------IQAS 256
             +DTG GLER+  + Q     YD  L   +                         +   
Sbjct: 245 KVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLKKMAGIEKIDEKILMENSRLAGMFDI 304

Query: 257 EQVTGMKYEGNNIVN------------------HRVIVDHLRSSSFLIADGILPANEGRG 298
           E +  ++Y    +                       I DH ++ +F++ADG++P+N   G
Sbjct: 305 EDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVKAG 364

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+ R ++R+++ + R LG   PL   ++     E+   +PE  + + +I E +  E++++
Sbjct: 365 YLARLLIRKSIRHLRELGLEVPLS-EIVALHIKELHKTFPEFKEMEDIILEMIELEEKKY 423

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL RG  L+   ++ L K  I  +  +     Y++HGL  +I+++I    G+      
Sbjct: 424 AETLRRGSDLVRREIAKLKKKGIKEIPVEKLVTFYESHGLTPEIVKEIAEKEGVKVNIPD 483

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F   + ++  R +           E + F L +    T+ + Y+     +F        
Sbjct: 484 NFYSMVAKEAERTKE------EKGEELVDFELLKDLPDTRRLYYEDPFMKEF-------- 529

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V  +++               V+ D T FY E GGQ  DTG  I 
Sbjct: 530 ------------DAKVLRVIKD-------------WVILDATAFYPEGGGQPYDTGVLIV 564

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G  +++T+VQK  + I   H + + G  +  M +   ID++ R Q   +H+ TH+L  A
Sbjct: 565 NGREVKVTNVQKVGKVII--HKVEDPGAFKEGMIVHGKIDWKRRIQHMRHHTGTHVLMGA 622

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +T D  R D++H K I+  ELK IE   N I+ ++  V    + R
Sbjct: 623 LVRVLGRHVWQAGSQLTTDWARLDISHYKRISEEELKEIEMLANRIVMEDRKVTWEWLPR 682

Query: 657 EDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             A       L          +RVV +E  D        CGGTH+ STG +  + I+   
Sbjct: 683 TTAEQKYGFRLYQGGVVPGREIRVVKIEDWD-----VQACGGTHLPSTGLVGPIKILRTE 737

Query: 715 SIRAGIRRIEAITGQ 729
            I+ G+ RI    G+
Sbjct: 738 RIQDGVERIIFACGE 752


>gi|281208014|gb|EFA82192.1| alanyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 804

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 138/249 (55%), Positives = 172/249 (69%), Gaps = 12/249 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            ++ SIR TFL +F++N H  + SSSL+P  D +L+FTNSGMV FKN F G EKPV    
Sbjct: 50  KSIDSIRKTFLSYFERNDHLRVESSSLVPHTDYSLLFTNSGMVQFKNCFIGFEKPVKPLC 109

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFD 119
           T+VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFGGY  FK  AI+ AW LLT +F 
Sbjct: 110 TSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGGYSHFKRDAIRHAWTLLTVDFK 169

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET-GPCGPCSEIFFD 178
           L   RL +TV   DEE+  +W+   GL +++I+     DNFWSM +  GPCGPCSEIF+D
Sbjct: 170 LPVDRLLVTVLHGDEESASIWRDDIGLPSERILYKGEADNFWSMGDGDGPCGPCSEIFWD 229

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           QG  + G           Y+EIWNLVFMQ+ +   ++   L    +DTGMGLERMATVLQ
Sbjct: 230 QGHEVDGDR---------YLEIWNLVFMQYHRDASRKLIPLATPCVDTGMGLERMATVLQ 280

Query: 239 EKTNNYDID 247
             ++NY+ID
Sbjct: 281 GVSSNYEID 289



 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 134/557 (24%), Positives = 234/557 (42%), Gaps = 68/557 (12%)

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           ++RG   LD ++        L+    F +++T+GLPL+ + ++   +    + +      
Sbjct: 292 IERGAPHLDDLIES----RKLDEWQVFNIFNTYGLPLE-ISEVKAKQANIELSMEKVQTY 346

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +EE + ++++      +   E +     ++    +FIGY   +    + +      Q   
Sbjct: 347 IEEMKEKSKSTWKKDKNNIPEPVLKWKNDRIEP-EFIGYTDTKSKSKVLKSYFNPEQDSV 405

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                                          +  D+ PFY  +GGQ+GDTG  IG     
Sbjct: 406 -----------------------------AYLSLDKCPFYGNSGGQIGDTGKIIGKSGNT 436

Query: 542 QITDVQKKAEGIFVHHAIVERGILR----------TEMSLVLTIDYQNRRQLSINHSATH 591
                  K     +   +     +            +  +   +D+  R+Q +I+H+ATH
Sbjct: 437 YRVIDCIKPYENGLVILLEIDPKIHRYNDLSIDLKEDSFVDSVVDHNIRQQTAIHHTATH 496

Query: 592 LLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           LL  AL  +       S V Q GS + PD LRFD T+   +T  E++ +E  +N II ++
Sbjct: 497 LLQAALRAVLKSNQSSSSVVQAGSYVGPDALRFDFTYPAKLTREEIQQVEHWINHIIEKD 556

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T      +A  S A  L   KY D VRVV V        S  LCGGTHV  T E+ 
Sbjct: 557 AIVETVETPYAEACKSDAIQLFSEKYRDVVRVVDVPGF-----SKELCGGTHVKRTSELQ 611

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              I+SE+S+ AG RRIEAI G  A   L    + L S++  L+V    V  +++++   
Sbjct: 612 CFKIISENSVAAGTRRIEAIAGPVAIKWLSNNSDILSSISRRLEVQTPAVEKQIDQLLTN 671

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIIS---EVDSKELKSVMDALQKKIQ 821
            ++ +   A   ++L +  +   K        + H+I     VD K L+ + +++ K+  
Sbjct: 672 RKEQERQIADLTMKLALASIKSAKGSFDGKPIIIHLIDCDVSVDKKGLQEIGNSMSKRDT 731

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG-GP 880
             + +++ +  + K  V +   +      +A  + +   +V+G G GGG   MAQ+  G 
Sbjct: 732 DSVHVIITL--DGKILVTLGSAKLDT---SADKVIKTLFQVIGAGKGGGSKQMAQASIGN 786

Query: 881 NGNKADQAIAGVASFLK 897
           N +K    I  V  +  
Sbjct: 787 NIDK--STIKNVYKWAN 801


>gi|70946295|ref|XP_742877.1| alanine--tRNA ligase [Plasmodium chabaudi chabaudi]
 gi|56522097|emb|CAH77105.1| alanine--tRNA ligase, putative [Plasmodium chabaudi chabaudi]
          Length = 917

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 222/931 (23%), Positives = 402/931 (43%), Gaps = 146/931 (15%)

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY---------DEDEEAFKLWKKISGLSA 148
           FG YFKE +I+ AWDLLT  + ++  RLY+T +           D EA K+W K   L  
Sbjct: 1   FGDYFKEESIEYAWDLLTNVYKINPDRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDE 58

Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQF 208
            +I+     DNFW MAETGPCGPCSEI +D+           +++    +EIWN+VFMQ+
Sbjct: 59  KRILPFGMKDNFWEMAETGPCGPCSEIHYDRIGNRDA-SDLVNKDDPSVLEIWNIVFMQY 117

Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-------- 260
            +  K+    LP   IDTGMGLER+ ++LQ   +NYD DLF  + +  +++         
Sbjct: 118 NKDEKKNMNKLPSPCIDTGMGLERITSILQNVQSNYDTDLFTPIFKQIKEIFNDIPNYQG 177

Query: 261 --GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
               +        +RVI DH+R ++  I+DG +P+NEGR YV+RRI+RRA+   + +   
Sbjct: 178 KINEEDPDKIDYAYRVISDHIRCATIAISDGCIPSNEGRNYVIRRIIRRAVRVGKQVFNI 237

Query: 319 EP---LMMHLLPALCTEMGSAYPE--LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           +        L+ ++C  +G+ + +    +    I+  +  E+  F KTL++G+   + ++
Sbjct: 238 KSNVLWFYKLVDSVCKILGNCFKDLQNEEKVNYIKNVIMQEELIFNKTLEKGVDQFNKII 297

Query: 374 SHLGK-----DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSR 428
               +     + + +G  AF LY ++G P+D+++ +   + +  +++  FN   ++ +  
Sbjct: 298 KKCHQKQNNSNNLFSGKDAFDLYTSYGFPIDLIEIMCEEKNVK-LNMEEFNTLFKKHQLV 356

Query: 429 ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
           +  ++  +           L  +        Y++L      K +     + P     N  
Sbjct: 357 SDTNNFKINK------IIDLPVEKAHEIKCKYNVLPTIDHHKYNWNNTFEIPKSKEENKD 410

Query: 489 SSIVKA---IVQQGEIVEEAVSGQ-----------------KVEVVFDQTPFYAEAGGQL 528
           +  +K+   I+  G  ++E V                    K  ++  +T FY E GGQ+
Sbjct: 411 NLRLKSSVQIIYDGNFLDEIVHTDDDAKESSSGEKIENKQKKYALILKETNFYYENGGQI 470

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    + ++ Q+ +V +K     +H  ++  G ++   ++   +D++ R+ ++ NH+
Sbjct: 471 YDTGYIQNESMKFQVLNV-QKMNDYILHIGVLLNGHIKKNDAIETVVDFERRKLIACNHT 529

Query: 589 ATHLLHHALSTI------------------------------------LGSHVSQNGSCI 612
           ATHLL+ AL  +                                       +  Q GS +
Sbjct: 530 ATHLLNFALRKVLTDQVNQKKNKCDNNGEKKESSLEDSSETRNKLEGSSIFNCDQKGSLV 589

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTK 671
             + LRFD +  + I    L  +E  +N+I+ + L V  + M+  ++    G  A+    
Sbjct: 590 DDEKLRFDFSFIENINMDVLNKLETEINNIVKEELNVSVKTMDLNESKKIKGIRAIFEED 649

Query: 672 YNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           Y D+V VV +      V            S  LCGGTH+ +T  I    I SE SI  GI
Sbjct: 650 YADKVNVVFISKNADDVLNNLDINYTYLCSIELCGGTHIGNTKYIKEFIITSEESIGKGI 709

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE------------IWEEYR 768
            RI A+T ++A       ++ +            N +  V+             + ++ +
Sbjct: 710 HRINAVTNKKAEEINKKFNDIVAKYKHVFDDPNENKLTDVQNYKRILKEDKFLPLIKKNK 769

Query: 769 KLQ------------LIHAKRKL---QLNVEDLSCHKIADVNFM-SHIISEVDS--KELK 810
            L+              +A+++L    +++  L   +  D   +   + +E++   K L+
Sbjct: 770 ILEDLEIIEKDIVEKKKNAQKELFNKAMSIGKLYATENKDNILLDIKLFTEINGNQKVLE 829

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
            V  A  K  ++     + I  E     ++ + + L      A    +   + + G  GG
Sbjct: 830 KVAQAYTKANKNLSYFFI-IHDENNTYCVLEIRDSLKGKGMQADTFMKQVMESVEGNSGG 888

Query: 870 GRPHMAQS-GGPNG-NKADQAIAGVASFLKK 898
           G+ + A    G +      QA       +KK
Sbjct: 889 GK-NKAFGSSGKDKGTTIKQA---AEEVIKK 915


>gi|167044057|gb|ABZ08742.1| putative tRNA synthetases class II (A) [uncultured marine
           crenarchaeote HF4000_APKG4H17]
          Length = 898

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 205/938 (21%), Positives = 352/938 (37%), Gaps = 177/938 (18%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTTVQKCVRA 70
            FF KNGH  +    ++      L FT + +V F+ +   +   +     +   Q C+R 
Sbjct: 81  SFFVKNGHTSVNRYPVVCRWRDDLYFTIASIVDFQRVMGSKVVFEFPANPLVVPQTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSF---GGYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S     GY+K+  + L + LLT++F +D++ +  
Sbjct: 140 ---FKDLENVGVTGRHFSSFCMIGQHSIPNSNGYWKDECVDLDYRLLTEQFGVDKKEV-- 194

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
            V+ ED                           W     G  G   E F           
Sbjct: 195 -VFVED--------------------------VWEGG--GSFGSSLEFFV---------- 215

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                   + +E+ N VF +F+      + +  +  ID G GLER A +       YD  
Sbjct: 216 --------KGLELGNAVFTEFQGDLSNYKTLD-QQIIDMGAGLERFAWLTMGTPTAYDCC 266

Query: 248 -------LFKHLIQASEQVTGMKYEGNNIVNH---------------------------- 272
                  L +     +     + Y      +                             
Sbjct: 267 FGPITNNLLQQAGIDTNDELLVTYFTKIAKHFERFSDLSEVRKNAIKSAGLSDEQVNKII 326

Query: 273 ------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
                  +IVDH+R+  F I+DG LP+N G GY LR ++RR +     L     +   ++
Sbjct: 327 IPLEGIYLIVDHIRTLIFAISDGALPSNVGGGYNLRMMLRRIISTMDRLSLKLDMNG-IV 385

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
            A    + + YPEL + +  I+  +  E  R+  +  R    ++ ++S L +   ++   
Sbjct: 386 DAQIDYLKNTYPELEKTREDIKTIIGIESGRYENSKLR----MEKIVSKLNQKPTVD--D 439

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
             +LY++ G+  D ++       +      +F   L E     +       S        
Sbjct: 440 LIRLYESDGVTPDYLK----EMKVISDIPSTFYSKLSELHQSKKQKEQDQLS-------- 487

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
                   T+ + Y                      D      + V     +        
Sbjct: 488 --LAGLPGTELLYY---------------------GDDPKEFDAKVLKSFDK-------- 516

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
                 VV D+T FYA  GGQ  D G         ++ DV K    I       + GI +
Sbjct: 517 -----YVVLDKTSFYARGGGQEPDHGTIEN----FEVVDVSKHGNVIVHEL---KNGIPK 564

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   ++ + R  ++ NH++TH+L+ +  ++LGS V Q+ +    D  R D+TH   
Sbjct: 565 EGSTVSCVVNSKRRDDITKNHTSTHILNSSSRSVLGSWVWQHSAFKEEDHARLDITHHSA 624

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T  E+  IED  N ++ +N+PV     +R  A       +        V V S+     
Sbjct: 625 LTDDEITKIEDLANSVVEKNIPVTIENFDRGTAEQKYGFKIYQ---GGIVPVKSIRIVSI 681

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTHV  T EI L+ I     I+ G+ RIE ++G  A  ++   D  L   +
Sbjct: 682 EDFDIEACGGTHVKQTDEIELIKITRTKRIQDGVVRIEFVSGDTALDYVKRHDADLIKKS 741

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-------ADVNFMSH 799
           S LK  +  +  +  E  +E R+   +  +  +Q  +      +I          NF   
Sbjct: 742 SELK-DKTELKEKRREQKQELREKFPLLVENIIQSKIGSAIVDEIVVDITESGKPNFCCT 800

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLARL 858
              + D      + + L +K     ++  G+ ++  K   +I   +       A D+A++
Sbjct: 801 DSDQYDEFFHIGLGEKLIEKDP--WMVYCGVFEDGDKIRAIIYSGDQAGKDKKAGDIAKI 858

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +++L GG GGG    AQ GG + +K + AI  V S +
Sbjct: 859 VSEIL-GGAGGGTQRFAQGGGKDKSKKNDAIEKVKSMV 895


>gi|225552345|ref|ZP_03773285.1| alanyl-tRNA synthetase [Borrelia sp. SV1]
 gi|225371343|gb|EEH00773.1| alanyl-tRNA synthetase [Borrelia sp. SV1]
          Length = 594

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 151/470 (32%), Positives = 256/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+  D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   +D + FN+  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NVDKLGFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 120/316 (37%), Gaps = 19/316 (6%)

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +   +  Q    +R   R+       G        L +   A     Y+ L   K   
Sbjct: 294 SVVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFI 353

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           +      ++      +        I +   +  + + G     ++D    Y        +
Sbjct: 354 KKELSKEEEKFFKTLSQGEQEFIKITRN--LPSKTIPGDIAFKLYDT---YGFPYEVTEE 408

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                G  +     +   K                     +          + +  H+AT
Sbjct: 409 LAIEYGFNVDKLGFNEHFKKHQKTSKKG---------GDKVFKGGLADYTYETTKLHTAT 459

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V 
Sbjct: 460 HLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVK 519

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM   +A   GA AL G KY+D V V  ++       S  +CGG HV +T E+    I
Sbjct: 520 KIIMELSEAREKGAMALFGEKYDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKI 574

Query: 711 VSESSIRAGIRRIEAI 726
             E S  +GIRRI+AI
Sbjct: 575 QKEQSSSSGIRRIKAI 590


>gi|167043875|gb|ABZ08564.1| putative tRNA synthetases class II (A) [uncultured marine
           crenarchaeote HF4000_APKG3E18]
          Length = 898

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 205/938 (21%), Positives = 355/938 (37%), Gaps = 177/938 (18%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTTVQKCVRA 70
            FF KNGH  +    ++      L FT + +V F+ +   +   +     +   Q C+R 
Sbjct: 81  SFFVKNGHTSVNRYPVVCRWRDDLYFTIASIVDFQRVMGSKVVFEFPANPLVVPQTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFG---GYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S     GY+K+  I L + L+T++F +D++ +  
Sbjct: 140 ---FKDLENVGITGRHFSSFCMIGQHSIPNSHGYWKDECIDLDYRLVTEQFGVDKKEV-- 194

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
            V+ ED                           W     G  G   E F           
Sbjct: 195 -VFVED--------------------------VWEGG--GSFGSSLEFFV---------- 215

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                   + +E+ N VF +F+      + +  +  ID G GLER A +       YD  
Sbjct: 216 --------KGLELGNAVFTEFQGDLSNYKTLD-QQIIDMGAGLERFAWLTMGTPTAYDCC 266

Query: 248 -----------------------LFKHLIQASEQVTGMKYEGNN---------------- 268
                                   F  + +  E+ + +     N                
Sbjct: 267 FGPITNNLLQQAGIDKNDELLVTYFTKIAKHLERFSDLSEVRKNAIKSAGLSDEQMNKII 326

Query: 269 --IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
             +    +IVDH+R+  F I+DG LP+N G GY LR ++RR +     L     +   ++
Sbjct: 327 IPVEGIYLIVDHIRTLIFAISDGALPSNVGGGYNLRMMLRRIISTMDRLSLKLDMN-EIV 385

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
            A    + + YPEL + +  ++  +  E  R+  +  R    ++ ++S L +   ++   
Sbjct: 386 DAQIDYLKNTYPELEKTREDVKTIIGIESGRYENSKLR----MEKIVSKLNQKPTVD--D 439

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
             +LY++ G+  D ++       +      +F   L +             S   ++   
Sbjct: 440 LIRLYESDGVTPDYLK----EMKVISDIPSTFYSKLSQLHQ----------SKKQKEQDQ 485

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
              E    T+ + Y                      D      + +     +        
Sbjct: 486 VSLEGLPETELLYY---------------------GDDPKEFDAKILKSFDK-------- 516

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
                 VV D+T FYA  GGQ  D G       + ++ DV K    I       + GI +
Sbjct: 517 -----YVVLDKTSFYARGGGQEPDHGTI----GKFEVVDVSKHGNIIVHEL---KNGIPK 564

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   ++ + R  ++ NH++TH+L+ +   +LGS V Q+ +    D  R D+TH   
Sbjct: 565 EGNTVSCVVNSKRRDGITKNHTSTHILNSSSRNVLGSWVWQHSAFKEEDHARLDITHHSA 624

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T  E+  IE   N  + +N+PV     +R  A       +        V V S+     
Sbjct: 625 LTDDEITKIEKLANSAVEKNMPVTIENFDRGTAEQKYGFKIYQ---GGIVPVKSIRIVSI 681

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTHV  TGEI L+ I     I+ G+ RIE ++G  A  ++   D+ L   +
Sbjct: 682 EDFDIEACGGTHVKKTGEIELIKITRTKRIQDGVVRIEFVSGGTAIDYVKQHDDDLIKKS 741

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-------ADVNFMSH 799
             LK  +  +  + +E  +E R+   I  +   Q  +      +I          NF   
Sbjct: 742 VELK-DKTELKEKRQEQKQELREKFPILVESITQSKIGTSIVDEIIVDITESGKPNFCCT 800

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLARL 858
           I  +       S  + L +K     ++  G+ ++  K   +I   +       A  +A++
Sbjct: 801 ISDQYGEFFHISFGEKLIEKDP--WMVYCGVFEDGDKIRAIIYSGDQAAKDKKAGYIAKI 858

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++VL GG GGG    AQ GG + +K + AI  V S +
Sbjct: 859 VSEVL-GGAGGGNQRFAQGGGKDKSKKNDAIEKVKSMV 895


>gi|216264895|ref|ZP_03436887.1| alanyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|215981368|gb|EEC22175.1| alanyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|312148018|gb|ADQ30677.1| alanyl-tRNA synthetase [Borrelia burgdorferi JD1]
          Length = 594

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/470 (32%), Positives = 257/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID + FN+  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NIDKLGFNEHFKKHQKTSKKGGEKVFKGGLADYTYETTKLHTATHLL 462



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 120/316 (37%), Gaps = 19/316 (6%)

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +   +  Q    +R   R+       G        L +   A     Y+ L   K   
Sbjct: 294 SVVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFI 353

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           +      ++      +        I +   +  + + G     ++D    Y        +
Sbjct: 354 KKELSKEEEKFFKTLSQGEQEFIKITRN--LPSKTIPGDIAFKLYDT---YGFPYEVTEE 408

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                G  I     +   K                     +          + +  H+AT
Sbjct: 409 LAIEYGFNIDKLGFNEHFKKHQKTSKKG---------GEKVFKGGLADYTYETTKLHTAT 459

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V 
Sbjct: 460 HLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVK 519

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM   +A   GA AL G KY+D V V  ++       S  +CGG HV +T E+    I
Sbjct: 520 KIIMKLSEAREKGAMALFGEKYDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKI 574

Query: 711 VSESSIRAGIRRIEAI 726
             E S  +GIRRI+AI
Sbjct: 575 QKEQSSSSGIRRIKAI 590


>gi|224534087|ref|ZP_03674670.1| alanyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|224512786|gb|EEF83154.1| alanyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
          Length = 594

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/470 (32%), Positives = 257/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 IVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID + FN+  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NIDKLGFNEHFKKHQKTSKKGGEKVFKGGLADYTYETTKLHTATHLL 462



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +          + +  H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +
Sbjct: 437 GEKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKM 496

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  E+K +E+ VN  I  +L V   IM   +A   GA AL G KY+D V V  ++     
Sbjct: 497 TDDEIKKVEEIVNLQIKNSLSVKKIIMKLSEAREKGAMALFGEKYDDLVSVYEIDG---- 552

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 553 -FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|312149615|gb|ADQ29686.1| alanyl-tRNA synthetase [Borrelia burgdorferi N40]
          Length = 594

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/470 (32%), Positives = 256/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   +D + FN+  +  +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NVDKLGFNEHFKRHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 120/316 (37%), Gaps = 19/316 (6%)

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +   +  Q    +R   R+       G        L +   A     Y+ L   K   
Sbjct: 294 SVVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFI 353

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           +      ++      +        I +   +  + + G     ++D    Y        +
Sbjct: 354 KKELSKEEEKFFKTLSQGEQEFIKITRN--LPSKTIPGDIAFKLYDT---YGFPYEVTEE 408

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                G  +     +   K                     +          + +  H+AT
Sbjct: 409 LAIEYGFNVDKLGFNEHFKRHQKTSKKG---------GDKVFKGGLADYTYETTKLHTAT 459

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V 
Sbjct: 460 HLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVK 519

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM   +A   GA AL G KY+D V V  ++       S  +CGG HV +T E+    I
Sbjct: 520 KIIMKLSEAREKGAMALFGEKYDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKI 574

Query: 711 VSESSIRAGIRRIEAI 726
             E S  +GIRRI+AI
Sbjct: 575 QKEQSSSSGIRRIKAI 590


>gi|226321195|ref|ZP_03796732.1| alanyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226321538|ref|ZP_03797064.1| alanyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|226232727|gb|EEH31480.1| alanyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|226233392|gb|EEH32136.1| alanyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 594

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/470 (32%), Positives = 257/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   +D + FN+  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NVDKLGFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 120/316 (37%), Gaps = 19/316 (6%)

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +   +  Q    +R   R+       G        L +   A     Y+ L   K   
Sbjct: 294 SVVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFI 353

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           +      ++      +        I +   +  + + G     ++D    Y        +
Sbjct: 354 KKELSKEEEKFFKTLSQGEQEFIKITRN--LPSKTIPGDIAFKLYDT---YGFPYEVTEE 408

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                G  +     +   K                     +          + +  H+AT
Sbjct: 409 LAIEYGFNVDKLGFNEHFKKHQKTSKKG---------GDKVFKGGLADYTYETTKLHTAT 459

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V 
Sbjct: 460 HLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVK 519

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM   +A   GA AL G KY+D V V  ++       S  +CGG HV +T E+    I
Sbjct: 520 KIIMKLSEAREKGAMALFGEKYDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKI 574

Query: 711 VSESSIRAGIRRIEAI 726
             E S  +GIRRI+AI
Sbjct: 575 QKEQSSSSGIRRIKAI 590


>gi|195941424|ref|ZP_03086806.1| alanyl-tRNA synthetase [Borrelia burgdorferi 80a]
 gi|221217734|ref|ZP_03589202.1| alanyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|223888838|ref|ZP_03623429.1| alanyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|225550064|ref|ZP_03771024.1| alanyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|221192411|gb|EEE18630.1| alanyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|223885654|gb|EEF56753.1| alanyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|225369176|gb|EEG98629.1| alanyl-tRNA synthetase [Borrelia burgdorferi 118a]
          Length = 594

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/470 (32%), Positives = 257/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 IVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   +D + FN+  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NVDKLGFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +          + +  H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +
Sbjct: 437 GDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKM 496

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  E+K +E+ VN  I  +L V   IM   +A   GA AL G KY+D V V  ++     
Sbjct: 497 TDDEIKKVEEIVNLQIKNSLSVKKIIMKLSEAREKGAMALFGEKYDDLVSVYEIDG---- 552

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 553 -FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|15594565|ref|NP_212354.1| alanyl-tRNA synthetase [Borrelia burgdorferi B31]
 gi|6707746|sp|O51238|SYA_BORBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2688110|gb|AAC66604.1| alanyl-tRNA synthetase (alaS) [Borrelia burgdorferi B31]
          Length = 594

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/470 (32%), Positives = 257/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   +D + FN+  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NVDKLGFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 120/316 (37%), Gaps = 19/316 (6%)

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +   +  Q    +R   R+       G        L +   A     Y+ L   K   
Sbjct: 294 SVVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFI 353

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           +      ++      +        I +   +  + + G     ++D    Y        +
Sbjct: 354 KKELSKEEEKFFKTLSQGEQEFIKITRN--LPSKTIPGDIAFKLYDT---YGFPYEVTEE 408

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                G  +     +   K                     +          + +  H+AT
Sbjct: 409 LAIEYGFNVDKLGFNEHFKKHQKTSKKG---------GDKVFKGGLADYTYETTKLHTAT 459

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V 
Sbjct: 460 HLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVK 519

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM   +A   GA AL G KY+D V V  ++       S  +CGG HV +T E+    I
Sbjct: 520 KIIMELSEAREKGAMALFGEKYDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKI 574

Query: 711 VSESSIRAGIRRIEAI 726
             E S  +GIRRI+AI
Sbjct: 575 QKEQSSSSGIRRIKAI 590


>gi|225549137|ref|ZP_03770112.1| alanyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|225370363|gb|EEG99801.1| alanyl-tRNA synthetase [Borrelia burgdorferi 94a]
          Length = 594

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/470 (32%), Positives = 257/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID + FN+  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NIDKLGFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 120/316 (37%), Gaps = 19/316 (6%)

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +   +  Q    +R   R+       G        L +   A     Y+ L   K   
Sbjct: 294 SVVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFI 353

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           +      ++      +        I +   +  + + G     ++D    Y        +
Sbjct: 354 KKELSKEEEKFFKTLSQGEQEFIKITRN--LPSKTIPGDIAFKLYDT---YGFPYEVTEE 408

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                G  I     +   K                     +          + +  H+AT
Sbjct: 409 LAIEYGFNIDKLGFNEHFKKHQKTSKKG---------GDKVFKGGLADYTYETTKLHTAT 459

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V 
Sbjct: 460 HLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVK 519

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM   +A   GA AL G KY+D V V  ++       S  +CGG HV +T E+    I
Sbjct: 520 KIIMKLSEAREKGAMALFGEKYDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKI 574

Query: 711 VSESSIRAGIRRIEAI 726
             E S  +GIRRI+AI
Sbjct: 575 QKEQSSSSGIRRIKAI 590


>gi|224532653|ref|ZP_03673274.1| alanine--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|224512433|gb|EEF82813.1| alanine--tRNA ligase [Borrelia burgdorferi WI91-23]
          Length = 594

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/470 (32%), Positives = 257/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   +D + FN+  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NVDKLGFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 79/316 (25%), Positives = 120/316 (37%), Gaps = 19/316 (6%)

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +   +  Q    +R   R+       G        L +   A     Y+ L   K   
Sbjct: 294 SVVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFI 353

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           +      ++      +        I +   +  + + G     ++D    Y        +
Sbjct: 354 KKELSKEEEKFFKTLSQGEQEFIKITRN--LPSKTIPGDIAFKLYDT---YGFPYEVTEE 408

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                G  +     +   K                     +          + +  H+AT
Sbjct: 409 LAIEYGFNVDKLGFNEHFKKHQKTSKKG---------GDKVFKGGLADYTYETTKLHTAT 459

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V 
Sbjct: 460 HLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLFVK 519

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM   +A   GA AL G KY+D V V  ++       S  +CGG HV +T E+    I
Sbjct: 520 KIIMKLSEAREKGAMALFGEKYDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKI 574

Query: 711 VSESSIRAGIRRIEAI 726
             E S  +GIRRI+AI
Sbjct: 575 QKEQSSSSGIRRIKAI 590


>gi|218249169|ref|YP_002374745.1| alanyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|218164357|gb|ACK74418.1| alanyl-tRNA synthetase [Borrelia burgdorferi ZS7]
          Length = 594

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/470 (32%), Positives = 257/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWS-MAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y      +   R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   +D + F++  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NVDKLGFDEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/316 (25%), Positives = 120/316 (37%), Gaps = 19/316 (6%)

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +   +  Q    +R   R+       G        L +   A     Y+ L   K   
Sbjct: 294 SVVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFI 353

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           +      ++      +        I +   +  + + G     ++D    Y        +
Sbjct: 354 KKELSKEEEKFFKTLSQGEQEFIKITRN--LPSKTIPGDIAFKLYDT---YGFPYEVTEE 408

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                G  +     D   K                     +          + +  H+AT
Sbjct: 409 LAIEYGFNVDKLGFDEHFKKHQKTSKKG---------GDKVFKGGLADYTYETTKLHTAT 459

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V 
Sbjct: 460 HLLHKALQLVLGDHVRQKGSNITAERLRFDFIHSEKMTDDEIKKVEEIVNLQIKNSLSVK 519

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM   +A   GA AL G KY+D V V  ++       S  +CGG HV +T E+    I
Sbjct: 520 KIIMKLSEAREKGAMALFGEKYDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKI 574

Query: 711 VSESSIRAGIRRIEAI 726
             E S  +GIRRI+AI
Sbjct: 575 QKEQSSSSGIRRIKAI 590


>gi|329737303|gb|EGG73557.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 552

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 192/583 (32%), Positives = 308/583 (52%), Gaps = 40/583 (6%)

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DE 380
           M  L+  +   M   YP +      I+  ++SE+ERF +TL+ GL +L+ ++      D+
Sbjct: 1   MYKLVDIVADIMEPYYPNVKDKSNFIKRVIKSEEERFHETLEEGLTILNELIKEAKNSDQ 60

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           ++ G  AFKLYDT+G P+++ +++     L+ +D+ +F Q +++QR RAR       S  
Sbjct: 61  VIKGHDAFKLYDTYGFPIELTEELATQENLS-VDMPTFEQEMQQQRDRARQARQNSQSMQ 119

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
            +     LK     +QF+GY+                            S++  I+  GE
Sbjct: 120 VQSEV--LKNIQDESQFVGYETTDY-----------------------QSLITHIIYNGE 154

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            V+   +G+ +  +  +TPFYA +GGQ+ D G    +   + +TDV K   G  +H  IV
Sbjct: 155 EVKHVEAGETIYFILRETPFYAVSGGQVADKGTVGNESFEINVTDVTKAPNGQNLHKGIV 214

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           + G       +   ++ ++RR +  NHSATHLLH AL  +LG HV+Q GS + P+ LRFD
Sbjct: 215 QFGEATQNAKVEARVNKEDRRLIQKNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFD 274

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +H  P+T  E+  +E  VN+ I + + V  + M+ E+A + GA AL G KY D VRVV+
Sbjct: 275 FSHFGPMTQEEINLVERRVNEEIWRAIDVCIQEMSIEEAKSIGAMALFGEKYGDIVRVVN 334

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +        S  LCGG HV++T EI L  IVSES   AG+RRIEA+TG+ A  HL   + 
Sbjct: 335 MAP-----FSIELCGGIHVNNTAEIGLFKIVSESGTGAGVRRIEALTGKGAFLHLEEIET 389

Query: 741 KLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLIHAKRK-----LQLNVEDLSCHKIADV 794
           +  ++ + LKV   N VV +V+++ EE + L     +R      L++   +     I ++
Sbjct: 390 QFNNIKNHLKVKSDNQVVEKVKQLQEEEKGLLKQLEQRNKEITSLKMGNIEEQVELINNL 449

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             ++  +   + K ++S MD  + K+Q  II+LVG   + K SV+  V + L ++  A D
Sbjct: 450 KVLATEVEIPNPKAIRSTMDDFKSKLQDTIIVLVG-QVDGKVSVIATVPKSLTNQVKAGD 508

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L +    ++ GG GGGRP MAQ GG    K  +A+  +  ++K
Sbjct: 509 LIKNMTPII-GGKGGGRPDMAQGGGTQPEKITEALRFIKDYIK 550


>gi|260822503|ref|XP_002606641.1| hypothetical protein BRAFLDRAFT_72608 [Branchiostoma floridae]
 gi|229291985|gb|EEN62651.1| hypothetical protein BRAFLDRAFT_72608 [Branchiostoma floridae]
          Length = 1128

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 209/829 (25%), Positives = 340/829 (41%), Gaps = 98/829 (11%)

Query: 150  KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209
            +I+     DNFW M + GPCGPC+EI +D            + +    +E+WNLVFMQF 
Sbjct: 309  RILPCGMRDNFWEMGDVGPCGPCTEIHYDHRGQRDASR-LVNTDSPEVVELWNLVFMQFN 367

Query: 210  QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--- 266
            +++      LP+  +DTGMGLER+  V+Q K +NYD DLF  L+ A  + T ++      
Sbjct: 368  RESDGTLRPLPRHVVDTGMGLERLVAVMQGKLSNYDTDLFSPLLHAIHKGTKVQPYSGLV 427

Query: 267  ------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTE 319
                       +R+I DH+R+ +  IADG++P  + R  VLR I+RRA+ YA+  LG  E
Sbjct: 428  GGEDVGGVDEAYRIIADHVRTLTIAIADGVMPGQQWRELVLRTILRRAVRYAQERLGAPE 487

Query: 320  PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379
             L+  L+P +   +G A+PEL+  +  + +T+  ++  F   L++G  L+   +  L K 
Sbjct: 488  GLVASLVPVVVQNLGEAFPELLSNQEKVMDTINEDEALFLSNLEKGKKLMSKTIRKLDKS 547

Query: 380  EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
                 +V + L+++ GLP D++Q ++  RG   +D+  +++   +   +           
Sbjct: 548  AFFPSEVGWFLHNSLGLPTDLVQSMVTDRGCR-MDMEHYSRIEGDALQKKAQGLQIAQVP 606

Query: 440  TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
            T +       +  G                         +            V ++  +G
Sbjct: 607  TLDAHSLQQLQALG----------VPPTDNSLKYNYRLTESGKYDFPSPEGRVLSLYMKG 656

Query: 500  EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            E+V     G    V+ D++ FY EAGGQ  D G    + + +  TD  +   G  +H   
Sbjct: 657  ELVGSVGPGDVCSVILDRSCFYPEAGGQESDQGNMTKNEVVVFTTDNVQVCGGYVLHQGQ 716

Query: 560  VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
             +   L  + ++ L ID + R      H+ATHLL+HAL  +LG    Q GS + P+ LRF
Sbjct: 717  AQT-SLTVDDTVQLNIDQERRLSCMQRHTATHLLNHALREVLGEACEQRGSHVGPNRLRF 775

Query: 620  DVTHSKPITSAELKSIEDNVNDIIAQNL----------------------PVVTRIMNRE 657
            D +     + AEL+ +E+ V  ++ +                         V TR +   
Sbjct: 776  DFSVKSLPSPAELRRVEETVQAMVDRQSLPSPAELRRVEETVQTMVDRQECVYTREVPLS 835

Query: 658  DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIM 706
             A        +  +Y D VRVVSV      + +             LC GTHV +T  I 
Sbjct: 836  QAKEVEGIRTMDEEYPDPVRVVSVGTPVEELMTNPTSGAASLTSVELCCGTHVHNTASIK 895

Query: 707  LLYIVSESSIRAGIRRIEAITGQRARSH------LMGQDEKLKSLASFLKVSQGN----- 755
               I  E     G RRI A+TG  A         L  + + L+ L    + S        
Sbjct: 896  AFVISYERRNEIGSRRIIAVTGDEAVEARKTGAELEERAKTLERLVLQEETSSLEEMEGV 955

Query: 756  ------VVGRVE----------EIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIA----- 792
                  ++ RV+          E+     +LQ    +   +L  +++     K+A     
Sbjct: 956  YRDVGKLIRRVDTASLPLWKRLELQVSLDQLQSQANRAVKKLRQQNVETVAQKVARTLVD 1015

Query: 793  ---DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTED-LL 847
               DV  ++      + K L++ +    +      IML G         V   V E  L 
Sbjct: 1016 RNEDVVLVTDTGLGPNLKVLRTTVRICSELAPDTPIMLFGTDPRTASVRVACKVPEAMLS 1075

Query: 848  DRFNAVDLARLS-AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
                A        A +   G G  R   A + G N +  + AI     +
Sbjct: 1076 RGLGARTWLDQVMADIKAKGRGDER--SATAAGGNPSGTEAAITAARRY 1122



 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/155 (45%), Positives = 96/155 (61%), Gaps = 14/155 (9%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           +   IR TFL+F++ K  H L+PSSS++P NDPTL+F N+GM  FK +  G   P     
Sbjct: 52  SSQEIRKTFLDFYKVKYDHLLVPSSSVVPRNDPTLLFINAGMNQFKPLIQGTVDPRSDMA 111

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKC+RAGGKHNDL++VGR   HHT FEMLGN+SFG +FK  A  + W+LLT 
Sbjct: 112 KYRRVVNSQKCIRAGGKHNDLEDVGRDCYHHTVFEMLGNWSFGDFFKREACAMTWELLTD 171

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKI 143
            + +   RLY+T +        + D E  ++W  +
Sbjct: 172 VYRIPADRLYVTYFGGDPDLGLEADLECREIWASL 206


>gi|167042221|gb|ABZ06953.1| putative tRNA synthetases class II (A) [uncultured marine
           crenarchaeote HF4000_ANIW93I24]
          Length = 898

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 210/940 (22%), Positives = 354/940 (37%), Gaps = 181/940 (19%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTTVQKCVRA 70
            FF KNGH  +    ++      L FT + +V F+ +   +   +     +   Q C+R 
Sbjct: 81  SFFVKNGHTSVNRYPVVCRWRDDLYFTIASIVDFQRVMGSKVVFEFPANPLVVPQTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFG---GYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S     GY+K+  I L + L+T++F +D++ +  
Sbjct: 140 ---FKDLENVGLTGRHFSSFCMIGQHSIPNSQGYWKDECIDLDYRLVTEQFGVDKKEV-- 194

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
            ++ ED                           W     G  G   E F           
Sbjct: 195 -IFVED--------------------------VWEGG--GSFGSSLEFFV---------- 215

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                   + +E+ N VF +F+         L +  ID G GLER A +       YD  
Sbjct: 216 --------KGLELGNAVFTEFQGDLS-NYKTLDQQIIDMGAGLERFAWLTMGTPTAYDCC 266

Query: 248 -------LFKHLIQASEQVTGMKYEGNNIVNH---------------------------- 272
                  L + +   +     + Y      +                             
Sbjct: 267 FGPITNNLLQQVGIDANDELLVTYFTEIAKHLERFSDLSEVRKNAIKTSGLSDEQINKII 326

Query: 273 ------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
                  +IVDH+R+  F I+DG LP+N G GY LR ++RR +     L     +   ++
Sbjct: 327 TPLEGIYLIVDHIRTLIFAISDGALPSNVGGGYNLRMMLRRIISTMDRLSLKFDMN-EIV 385

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
                 + + YPEL + +  I+  +  E  R+  +  R    ++ ++S L +   ++   
Sbjct: 386 DTQINYLKNTYPELEKTREDIKTIIGIESGRYENSKLR----MEKIVSKLNQKPTVD--D 439

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
             +LY++ G+  D ++       +      +F   L +             S   ++   
Sbjct: 440 LIRLYESDGVTPDYLK----EMKVISDIPSTFYSKLSQLHQ----------SKKQKEQDQ 485

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
              EK   T+ + Y                      D      + +     +        
Sbjct: 486 VSLEKLPDTELLYY---------------------GDDPKEFDAKILKSFDK-------- 516

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
                 VV D+T FYA  GGQ  D G       + ++ DV K    +       + GI +
Sbjct: 517 -----YVVLDKTSFYARGGGQEPDHGTIE----KFEVVDVVKHGNVVVHEL---KNGIPK 564

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   ID + R  ++ NH++TH+L+ +  ++LGS V Q+ +    D  R D+TH   
Sbjct: 565 EGSTVSCVIDSKRRDGITKNHTSTHILNSSTRSVLGSWVWQHSAFKEEDHARLDITHHSA 624

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYE 684
           +T  E   IE   N I+ +N+ V     +R  A       +          VR+VS+E  
Sbjct: 625 LTDDETAKIEKLANSIVEKNMSVTIESFDRGTAEQKYGFKIYQGGIVPVKSVRIVSIEDF 684

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        CGGTHV  TGEI L+ I     I+ G+ RIE ++G  A  +    D  +  
Sbjct: 685 D-----VEACGGTHVKKTGEIELIKITRTKRIQDGVVRIEFVSGPTALDYTKQHDASIIK 739

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-------ADVNFM 797
            ++ LK     +  +  E  +E R+   I     +Q  +      +I          NF 
Sbjct: 740 KSAELKEKM-EMKEKRREKKQELRERFPILVDSIIQSKIGTNIVDEIIVDMTESGKPNFC 798

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLA 856
           S I  + D  EL  +    +   +   ++  G+ ++  K   +I   E       AVD+A
Sbjct: 799 STISDQYD--ELFHISLGQKLIEKDPWMVYCGVFEDGDKIRTIIYSGEQAAKYKKAVDIA 856

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +L +++L GG GGG    AQ GG    K + AI    + +
Sbjct: 857 KLVSEIL-GGAGGGNQRFAQGGGKEKFKKNDAIEKAKAMV 895


>gi|167042980|gb|ABZ07693.1| putative tRNA synthetases class II (A) [uncultured marine
           microorganism HF4000_ANIW137P11]
          Length = 961

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 198/963 (20%), Positives = 360/963 (37%), Gaps = 152/963 (15%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAVTTVQ 65
           +R  FL FF++  H  +    +I      +  T + +  F+  + +GQ  P    +   Q
Sbjct: 76  MREMFLGFFEERDHTRIEPYPVIARWRDDIHLTIASIADFQPHVTSGQVPPPANPLVISQ 135

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-------YFKERAIQLAWDLLTKEF 118
            C+R      D+  VGR+ RH + FEM+ + +F         Y+ ++ ++   ++L+   
Sbjct: 136 PCIRL----TDVAAVGRSGRHLSTFEMMAHHTFNRPKEGAVVYWIDQCVRYCDEMLSDRL 191

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP------- 171
            +                                 IT  +N WS    G  GP       
Sbjct: 192 GIAAS-----------------------------EITYVENPWSGG--GNAGPALEVIVG 220

Query: 172 ----------CSEIFFDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERF 217
                       E   D    I G      +    +    +E       +F         
Sbjct: 221 GLELATLVFMSLEEHTDGDIEIKGLRYREMDLQIIDTGYGLE-------RFCWAAAGTPT 273

Query: 218 ILPK---------------MSIDTGMGLE-----------RMATVLQ-----EKTNNYDI 246
           I                   ++ TG+GL+           ++A +L      +  + Y+ 
Sbjct: 274 IYEAIYPESVEWLKELAGFDAMVTGLGLDVDTDALLGELSKLAGILNIDVGTDVASLYEK 333

Query: 247 DLFKHLIQASE-QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
              +   +     V  +K     + +   I DH+++   ++ DG++P+N   GY++R + 
Sbjct: 334 LAERLGEKGISISVGELKRLTEPLSSIYAIPDHMQAICNMLGDGLVPSNAKAGYLVRMLA 393

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR       L     L       + T +   +   +Q++  + + L  E+ R+ + L +G
Sbjct: 394 RRVCRMLGDLSLAVTLAELGAHHMDTHL--DFDGFVQSRSAVLQILDLEEARYHEMLRKG 451

Query: 366 LVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI-DIISFNQALE 423
              +   L  + K       +  F+L +  GL  +++  I  A G   +   + F   + 
Sbjct: 452 EAAVRTALRSVPKTAAEAPDETLFRLAEERGLNPEMVVSIAHALGWENLSVRVGFAADMA 511

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
              +R   H+       T + +F+      AT    Y+    + F               
Sbjct: 512 ---ARNALHTKAAAVAKTREAFFA-TNGAAATVREFYEDTSQTAFETTVLDCSALTEVQL 567

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
            T   SS VK                   V+   T FY E GGQLGD G          +
Sbjct: 568 STLNFSSEVKG-------------EPTHAVILRSTLFYPEGGGQLGDQG----SLGDTSV 610

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D + + E I         G ++    +   +D+  RRQL  +H+A H++  +    LG 
Sbjct: 611 VDTRIEGEVIIHL----TDGPVQAGP-ISGQVDWNRRRQLMDHHTAVHIVGGSARAHLGP 665

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H+ Q GS       R DVTH + +T  +L  IED+ N+IIA N  +   +M R +A    
Sbjct: 666 HIWQAGSNKGERYARLDVTHFQRLTRDDLHQIEDHANEIIAANHSIEKLVMGRAEADQRF 725

Query: 664 AAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              L         ++R++ +   D        CGGTH    G++  L I+  S ++ G+ 
Sbjct: 726 GFELYQGGPPKQQQIRIIRIGEHD-----VQACGGTHHDEAGQVGELRIIRSSQVQDGVE 780

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R++ + G+ AR H   Q+  L   +    VS  N+   V+  +EE++  Q      + ++
Sbjct: 781 RLQIVAGETAREHARAQERLLNESSEVFGVSPENLPATVQRFFEEWKSQQKRIEILEAEI 840

Query: 782 -----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL-QKKIQSGIIMLVGISKEKK 835
                +       +   + +    I   + K++ +++  L +   +  + +L   S   K
Sbjct: 841 VRLRTSGGGGDAVEKDGIRYAIMEIDG-EMKQMMTMLTQLTRDASKPTLAILGTRSDGGK 899

Query: 836 ASVLIVVTED--LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
             +++  TE     +R +AV++    A  +GGGG GGRP +AQ GG NG+    A+    
Sbjct: 900 --LIVASTEGSLAAERHDAVEILNAIAGHIGGGG-GGRPTLAQGGGSNGDGIPAALDAAR 956

Query: 894 SFL 896
             L
Sbjct: 957 QLL 959


>gi|258655273|ref|YP_003204429.1| alanine--tRNA ligase [Nakamurella multipartita DSM 44233]
 gi|258558498|gb|ACV81440.1| Alanine--tRNA ligase [Nakamurella multipartita DSM 44233]
          Length = 465

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 236/473 (49%), Gaps = 56/473 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L+F  + GH ++P + LIP +DPT +FT SGM P      G + P    +
Sbjct: 1   MDADDIRRIYLDFMVERGHVVIPRAPLIPRDDPTTLFTGSGMQPLLPYLLGADHPAGTRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  Q C+RA     D+D VG  NRH TFFEMLGN+S G YFK   +   W+ LT    LD
Sbjct: 61  TDSQTCLRA----QDIDEVG-DNRHTTFFEMLGNWSLGDYFKAEQLPQVWEFLTDRVGLD 115

Query: 122 QRRLYITVYDE--------DEEAFKLWKKI---SGLSAD------------------KII 152
             R+Y++ +          D E+  +W ++   +G+SAD                  +I 
Sbjct: 116 PNRIYVSCFSGDPEHGIAKDTESAAIWTRLFTAAGVSADQVDLDTEEHGGEVGNQGARIA 175

Query: 153 RITTNDNFW-------SMAETGPCGPCSEIFFDQ----GECIPGGLPGSSEEGERYIEIW 201
              +  N+W        M    P GP SE+F+       +   G     + +  RY+EI 
Sbjct: 176 FYGSK-NWWCRGGHAQDMPVGEPGGPDSEMFYLFPQIEHDPAYGAHCHQNCDCGRYLEIG 234

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N VFM++ +        LP+ ++D G GL R+A    +  + + I+L   ++   E+++G
Sbjct: 235 NSVFMEYVRTETG-FAPLPRRNVDFGGGLARIAAASIDSPDVFRINLLWPIVAKLEELSG 293

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
             Y   + V  RVI DHLR ++FL  DG+ P+N+ +GYV+RR++RRA+ YA  LG  +  
Sbjct: 294 RSY-DTDTVAMRVIADHLRGATFLAVDGVRPSNKEQGYVMRRLIRRAIRYAFDLGLQQNF 352

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              ++P +       YPE+ Q    +   L  E++ F +TL++G+  L G          
Sbjct: 353 FAEIIPTVSGMYTQDYPEVAQRAESVVGVLVKEEKAFRRTLNKGIKQLRGYKDG------ 406

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAH 432
           + G   F LYDT G P+++  +   A+G+A  +     F++ + EQR+R++A 
Sbjct: 407 IGGAELFVLYDTFGFPVELSTEEARAKGIALAENWRADFDEKMAEQRARSQAA 459


>gi|289677326|ref|ZP_06498216.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 199

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/199 (57%), Positives = 138/199 (69%), Gaps = 9/199 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS 191
           SEIFFD G  I GG PGS 
Sbjct: 181 SEIFFDHGPEIWGGPPGSP 199


>gi|48927|emb|CAA42581.1| alanyl-tRNA synthetase [Sinorhizobium meliloti]
          Length = 201

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/201 (68%), Positives = 167/201 (83%), Gaps = 1/201 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSMFLDYFRKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D++ F LWKKI+GLS D IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDDTFGLWKKIAGLSDDHIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEI 200
           + I GG PGS+ E+G+R+IEI
Sbjct: 181 DHIWGGPPGSAEEDGDRFIEI 201


>gi|329765739|ref|ZP_08257308.1| alanyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137805|gb|EGG42072.1| alanyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 896

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 203/952 (21%), Positives = 341/952 (35%), Gaps = 206/952 (21%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTTVQKCVRA 70
            FF KNGH  +    ++      L FT + +V F+ I   +   +     +   Q C+R 
Sbjct: 81  SFFVKNGHTSVSRYPVVCRWRDDLYFTIASIVDFQRIMGSKVVFEFPANPLIVPQTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFG---GYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S     GY+K+  + L + LLT++F + +  +  
Sbjct: 140 ---FKDLENVGVTGRHFSSFCMIGQHSIPNSQGYWKDECVDLDFRLLTEQFGIKKEEV-- 194

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
            V+ ED                           W+    G  G   E F           
Sbjct: 195 -VFVED--------------------------VWAGG--GSFGSSLEYFV---------- 215

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                   R +E+ N VF +F Q       IL +  ID G GLER A + +     YD  
Sbjct: 216 --------RGLELGNAVFTEF-QGELGNHTILDQKIIDMGAGLERFAWITKGTPTAYDCC 266

Query: 248 -------LFKHLIQASEQVTGMKYEGNNIVN----------------------------- 271
                  LF+ +   S+     KY      N                             
Sbjct: 267 FGPITNHLFEKIGIDSDSEMLRKYFTAIAKNLEIHEDLIDVRKHAVNATGLSQDQINRII 326

Query: 272 -----HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
                  +I DHLR+  F I DG LP+N G GY LR ++RR       +   +  +  L+
Sbjct: 327 TPLEGMYLIADHLRTLIFAITDGALPSNVGGGYNLRMMLRRINGTMDRMNL-KLDIDELV 385

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
                 +   YPEL + +  ++   + E ER+ ++  R   +   +        +   D 
Sbjct: 386 DMHIDYLRDTYPELDEKRDDVKTIFKLESERYVESKVRMGKMASRLKDKGRAPTV---DE 442

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
              LY++ G+  + ++       +      SF   L +             S   + +  
Sbjct: 443 LITLYESDGITPEYLK----EINVISEIPSSFYAKLSDLHQ----------SDKKKALES 488

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
              E    T+ + Y                      D      + V  +           
Sbjct: 489 LPLENIPETEMLFY---------------------KDDPMEFDAKVLKVFDSS------- 520

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
                 VV D+T FYA  GGQ  D G   G     ++ DV K    I            +
Sbjct: 521 ------VVLDRTSFYARGGGQEPDHGVIAG----AKVIDVNKDGGVIVHKLEGQV---PK 567

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R  ++ NH++TH+L+ +  ++LGS + Q+ +    D  R D+TH   
Sbjct: 568 EGDTVSCKVDATRRANITKNHTSTHILNSSSRSVLGSWIWQHSAFKEADHARLDITHHSS 627

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYE 684
           +T  ++  IE   N+I+A+++ V     +R  A       +          VR+VS+E  
Sbjct: 628 LTDQQVADIERKANEIVAKDMTVSIENYDRGTAEQKYGFKIYQGGVVPVKSVRIVSIEDF 687

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        CGGTHV  T ++ L+ I     I+ G+ R+E ++G  AR ++  Q+     
Sbjct: 688 D-----VEACGGTHVKKTRDVELIKITKTKRIQDGVVRLEFVSGPTAREYVKQQE----- 737

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-------------------RKLQLNVED 785
                       + R + + EE +K      +                    +    + D
Sbjct: 738 ------------IERAQRLQEEKQKEFKDKQREEEKQKAKEKIPALLEQVSAQKSSAIID 785

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK-ASVLIVVTE 844
                +  +        + D     +    L K   + + +  GI +      V+    +
Sbjct: 786 EIEINVDKIKSCFTNSKQYDEFFHMNFGKRLVKDNPNSVYV--GIFESGPTVRVIAYAGD 843

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +     NA  +A+  A++L GG GGG    AQ GG + +K ++AI    S +
Sbjct: 844 EASKGKNAGIIAKSVAEIL-GGAGGGDAKFAQGGGKDTSKINEAITKAKSMI 894


>gi|329737456|gb|EGG73710.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 265

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/268 (43%), Positives = 159/268 (59%), Gaps = 13/268 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +
Sbjct: 4   MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   
Sbjct: 64  VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++  +LY+T++ ED EAF++W +  GL   +IIRI    NFW + E GP GP +EIF+D+
Sbjct: 120 MEPEKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176

Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLERM +
Sbjct: 177 GSAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           + Q    NY+ DLF  +I+  E V+G  
Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKN 264


>gi|313618845|gb|EFR90725.1| alanyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 533

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 181/562 (32%), Positives = 294/562 (52%), Gaps = 41/562 (7%)

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L +     ++ + G   FKLYDT G P+++ +
Sbjct: 2   DFIQKVIRTEEERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTE 61

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +     GL  +D   F   ++EQR RAR+    + S   +     L      ++F+GY+ 
Sbjct: 62  EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTDKSEFVGYNT 118

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      S +  ++Q   +V+E  SG + +V+F +TPFYA
Sbjct: 119 TEHV-----------------------SEILYLIQDDTLVDEVASGSEAQVIFKETPFYA 155

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+
Sbjct: 156 ESGGQVADKGTIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRE 215

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ 
Sbjct: 216 TIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEX 275

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             + + V+   M   +A   GA AL G KY + VRVV V     G +S  LCGG HV +T
Sbjct: 276 XWEQINVIIEEMPIAEAKELGAMALFGEKYGEVVRVVQV-----GKYSIELCGGVHVRNT 330

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE+
Sbjct: 331 ADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQ 390

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQ 817
           +  + R+++  +     +L     +       +I  V  ++  ++  D  +L+  +D  +
Sbjct: 391 LQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWK 450

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            K   G+++L  +  + K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ
Sbjct: 451 DKKIGGVLVLGAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQ 508

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
           +GG N  +   A+  V++++K+
Sbjct: 509 AGGKNPAELGTALDYVSTWVKE 530


>gi|225629867|ref|ZP_03787773.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591275|gb|EEH12409.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 212

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/216 (60%), Positives = 161/216 (74%), Gaps = 7/216 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F++FF  N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +  
Sbjct: 1   MKLNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE  LD
Sbjct: 61  VSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL ITVY  D+EA+++W+KISG S+DKIIRITT+DNFWSM  TGPCGPCSEIF+D G 
Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHG- 179

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF 217
                   + +EG+R +EIWNLVFM+F +  +    
Sbjct: 180 ------SPNLQEGDRIVEIWNLVFMEFNKDEEGNLH 209


>gi|254574770|pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
           Oligomerization Domain In Lysine-Methylated Form
 gi|254574771|pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
           Oligomerization Domain In Lysine-Methylated Form
          Length = 752

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 179/795 (22%), Positives = 309/795 (38%), Gaps = 168/795 (21%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVY 58
            +  +R  FL FF+ +    H  +    ++P     ++   + ++ F+    +G+  P  
Sbjct: 58  TLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +   Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +                                 IT  +N W+    G  GP  
Sbjct: 174 FTKELXMXPED-----------------------------ITFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------------QERFILPK 221
           E+ +                  R +E+  LVFMQ+    +            ++   +  
Sbjct: 203 EVLY------------------RGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHL-------------------------IQAS 256
             +DTG GLER+  + Q     YD  L   +                         +   
Sbjct: 245 XVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDI 304

Query: 257 EQVTGMKYEGNNIVN------------------HRVIVDHLRSSSFLIADGILPANEGRG 298
           E +  ++Y    +                       I DH ++ +F++ADG++P+N   G
Sbjct: 305 EDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAG 364

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+ R ++R+++ + R LG   PL   ++     E+   +PE  + + +I E +  E++ +
Sbjct: 365 YLARLLIRKSIRHLRELGLEVPLS-EIVALHIXELHKTFPEFXEMEDIILEMIELEEKXY 423

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL RG  L+   ++ L K  I  +  +     Y++HGL  +I+ +I    G+      
Sbjct: 424 AETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPD 483

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F   + ++  R +           E + F L +    T+ + Y+     +F        
Sbjct: 484 NFYSMVAKEAERTKE------EKGEELVDFELLKDLPDTRRLYYEDPFMXEF-------- 529

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V  ++                V+ D T FY E GGQ  DTG  I 
Sbjct: 530 ------------DAXVLRVIXD-------------WVILDATAFYPEGGGQPYDTGVLIV 564

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G  + +T+VQ     I   H + + G     M +   ID+  R Q   +H+ TH+L  A
Sbjct: 565 NGREVXVTNVQXVGXVII--HXVEDPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGA 622

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +T D  R D++H   I+  EL  IE   N I+ ++  V    + R
Sbjct: 623 LVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPR 682

Query: 657 EDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             A       L          +RVV +E  D         GGTH+ STG +  + I+   
Sbjct: 683 TTAEQXYGFRLYQGGVVPGREIRVVXIEDWD-----VQAXGGTHLPSTGLVGPIXILRTE 737

Query: 715 SIRAGIRRIEAITGQ 729
            I+ G+ RI    G+
Sbjct: 738 RIQDGVERIIFACGE 752


>gi|16081904|ref|NP_394309.1| alanyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|22096203|sp|Q9HJW4|SYA_THEAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|10640126|emb|CAC11978.1| alanyl-tRNA synthetase related protein [Thermoplasma acidophilum]
          Length = 871

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 190/911 (20%), Positives = 342/911 (37%), Gaps = 174/911 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
           ++S +R  F++FF+K GH+ L    ++P     ++  N+ +  F+  + +G  +P    +
Sbjct: 61  SLSEMRDAFIKFFEKRGHKFLKPYPVVPRWREDVLLVNASIYDFQPHVTSGIVRPPGNPI 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R     ND+D VG T RH T FEML + SF       Y+KE  +   +D LT+
Sbjct: 121 VMSQPSIRM----NDVDLVGITGRHLTSFEMLCHDSFNTKDKTVYWKEETVHYCYDFLTE 176

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D +                              I+  +  WS    G  G   E+F
Sbjct: 177 GLGIDGK-----------------------------LISFKEKPWSGG--GNAGNALEVF 205

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMG 229
                              R +E+  LVFM  ++       I       +    +DTG G
Sbjct: 206 V------------------RGLEVATLVFMDMKEDPNGPYEIDGIRYSKMDMRIVDTGYG 247

Query: 230 LERMATVLQEKTNNYDI---DLFKHLIQAS---------------EQVTGMKYEGNNIVN 271
           LER+  + Q     Y     D+ +H+++ S                 V    YE + +++
Sbjct: 248 LERLTWLSQGTPTVYQAIYPDIIQHVMKNSSVSDIDEEFLSEVVKASVMKEPYEESFVIS 307

Query: 272 ---------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                                  +++DH RS   + A  ++P+N   GY+ R ++RRA  
Sbjct: 308 QLEKRYPDARQRFEEIKKVRDVFLMIDHARSLMHMFAAYVIPSNVKVGYLARMLIRRAYR 367

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
                GY   L M L+     ++    P+  +    + + L  E+E++      G  ++D
Sbjct: 368 AISNTGYRGSL-MDLIRMNHEDLKDIVPDFPE--QFVSDVLSIEEEKYRDVERHGTQIID 424

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
            ++S+      L+ D    LYD+HG+  + ++  L  +G+      +F+  + ++  +  
Sbjct: 425 KMISN---KGKLSLDDLVLLYDSHGISPETVKAYLETKGMEIDVPDNFHAIVIKRHEKGE 481

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                         +  +      T+ + YD     +F                      
Sbjct: 482 TEKKKY------SDYPEI-----ETRTLYYDDPFMREFTG-------------------- 510

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
               +  +G             ++ D+T FY E GGQ  D G     G R+ +  V+K  
Sbjct: 511 --LVLFSKGNE-----------IILDKTAFYPEGGGQPWDLGYFEYKGKRINVVAVRKYG 557

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           + I         G +   + +   ID++ R +L ++H++THLL   L  +LG HV QNG 
Sbjct: 558 KTIVHTL----DGEIPQGVRVHGVIDWERRSRLMVHHTSTHLLLGVLREVLGEHVWQNGV 613

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG- 669
               +  R D+TH + I    ++ IE+ V D+I +   V  R ++   AI      L   
Sbjct: 614 QKDVEESRLDITHYRKIDEETIRKIEERVFDLIREGREVSVRNLDWYSAIDKYGFRLFEG 673

Query: 670 -TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                 ++RVV ++  D        CGGTH+ +   I +L I    +I+  I RI    G
Sbjct: 674 GVPLTPKIRVVEIQGVDA-----EGCGGTHLKNISSIGVLKIRKVEAIQENIYRITFSAG 728

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A        E    +++ LK     +   V E+ + Y  L+   A+ + +     ++ 
Sbjct: 729 VPALHLFQESYEASYGISTLLKKPIEEIAQSVSELSKGYADLRRSLAEARRRDIENRIAN 788

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
            K        + I E D  ++  +      +    + ++V      K     +       
Sbjct: 789 AKKIGTPGAEYPIIEADDADIGEISRIAHSR---KVDLIVETRIAGKFKYTAISPSK--- 842

Query: 849 RFNAVDLARLS 859
              A D+ R  
Sbjct: 843 --KARDMIRKL 851


>gi|126465992|ref|YP_001041101.1| alanyl-tRNA synthetase [Staphylothermus marinus F1]
 gi|205830219|sp|A3DNI3|SYA_STAMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126014815|gb|ABN70193.1| alanyl-tRNA synthetase [Staphylothermus marinus F1]
          Length = 909

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 192/929 (20%), Positives = 364/929 (39%), Gaps = 163/929 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
                R  F+EFF  +GH  +    ++      L  T + ++ F+   T G   P Y  +
Sbjct: 59  TFDEARRKFIEFFTSHGHGYVDPYPVLARWRNDLYLTIASIIVFQPAVTEGIVDPPYNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             VQ  VR      D+DNVG T  RH T FEM G+ +F       Y+    +Q A+D  T
Sbjct: 119 VIVQPSVRLE----DIDNVGLTFGRHLTSFEMGGHHAFNKKDQYVYWVNETLQYAFDFFT 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   ++   +   V+                           +++W     G  GP  E+
Sbjct: 175 KIIGIEPENI---VF--------------------------KESWWEGG--GNAGPAYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
             D                   +E+  LVFM++ +    ++   P + +DTG G+ER+A 
Sbjct: 204 LVD------------------GLELATLVFMKY-KIVNGKKVRNPVLVVDTGYGIERIAW 244

Query: 236 VLQEKTNNY-----------------------------------DIDLFKHLIQASEQVT 260
             Q     +                                   +I+    L +  E++ 
Sbjct: 245 FTQRTPTAFHTIFSSLLETYKNILGIDEPPYDVLKKIVYLLSDKEIEDVYMLNKYLEEID 304

Query: 261 GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
             +Y  +  + +N    +DH+++ S +++DGI+ +N G GY+ R ++RR +     LG  
Sbjct: 305 YSEYYKSLVDTINLYTALDHVKTLSLMLSDGIVSSNTGEGYLARLVIRRLLRTLIRLGIK 364

Query: 319 EPLMMHLLPALCTEMGSAY------PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
              +  ++  L  +    +       +  +    I + +  E  ++   + RG+  +D  
Sbjct: 365 VSTLEDIVLELIDKQAKYWKGRYVYDKFHRRLDYILDVMSYETRKYIDIVTRGIREVDRF 424

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           +    K + +  D   ++YD+ G+P +I+ +     G       +F   +  +   ++A 
Sbjct: 425 I---KKKKKITFDDLIQIYDSKGIPPEIVVERAKHYGQEIRVPSNFYSLIAARHGGSQAL 481

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                    ++I      K+  T+ + ++     +                     S+ V
Sbjct: 482 IKEKEHELPDEI-VEWASKHDPTKKLFHENPYLRR--------------------ASAKV 520

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                     +         V+FDQT FY  AGGQ  D G  I     + +  V K  E 
Sbjct: 521 L---------DSLNE----YVIFDQTIFYPRAGGQDHDKGYVILGNEHIPVKHVYKVGEV 567

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I    A   R        + L ID+ NR +L  +H+ATH++  A   +LG HV Q G+  
Sbjct: 568 IVHQLATKRRL--VPGTQVELVIDWYNRYRLMRHHTATHIVLGAARKVLGEHVWQAGAEK 625

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--T 670
           T +  R D+TH K ++  E++ IE+  N +I + + +    + + +A       +     
Sbjct: 626 TVEKARLDITHYKSLSDEEIRKIEELANKVIDERIDLKFYFLPKFEAEKRFGLRIYQGGA 685

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
            Y+  +R+V +   D        C GTHV +T EI  + I+    I+ G+ R+E I   R
Sbjct: 686 VYSPILRIVEIPGWDA-----EACFGTHVYNTSEIGGIKIIKAEKIQDGVIRLEYIASTR 740

Query: 731 ARSHLMGQDEKLKSLASFLKV---SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
              ++    +++     FL         V  +V E  ++Y+ L + + +   ++ ++ L 
Sbjct: 741 LPEYISDLQKEVDKALKFLGAKGLPISIVAKKVSEELDKYKTLLIQYRRLFKEILLKHLL 800

Query: 788 CHKIADVNFMSHII--SEVDSKEL-KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             +  ++  +  ++   +++ ++L KS+++ L  K +    +L     +K   + I   E
Sbjct: 801 -EEALEICGLKTVVIEKQLEDEQLYKSIIEDLSLKKR----VLTIYVSDKFVEIAIHPDE 855

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
               + +   L  +      GG GGG+P 
Sbjct: 856 ANNRKLDLRKLVEIL--QNMGGRGGGKPD 882


>gi|320101298|ref|YP_004176890.1| alanyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
 gi|319753650|gb|ADV65408.1| alanyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
          Length = 908

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 185/929 (19%), Positives = 339/929 (36%), Gaps = 163/929 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  F+ F +  GH ++    ++      L  T + ++ F+   T G   P Y  +
Sbjct: 59  SLQEVREKFIGFLRSKGHGVVDPYPVLARWRNDLYLTIASIIVFQPAVTEGIVDPPYNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             +Q  +R      D+DNVG T  RH T FEM G  +F       Y+ E  +    +   
Sbjct: 119 VIIQPSIRLS----DIDNVGLTFGRHLTSFEMGGMHAFNKPGRFIYWVEGILDNTIEFFN 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  +D   L   V+                           + +W     G  GP  E+
Sbjct: 175 KEIGIDLDDL---VF--------------------------KEGWWEGG--GNAGPAPEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
             D                   +E+  LV M + +    +    P + +D G G+ER+A 
Sbjct: 204 LVD------------------GMELATLVHMMY-KVVDGKYVENPVLVVDCGYGIERIAW 244

Query: 236 VLQEKTNNYDI--------------------DLFKHLIQA-----SEQVTGMK------- 263
             Q+    +                      D+ K  +        E +   +       
Sbjct: 245 FTQKTPTGFHAIYGRLINEYKDVLGVEEPPYDVLKKAVYMLSDREIEGIREYERALREHG 304

Query: 264 -----YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
                 E   ++    ++DH R+ S +++DG++P+N G GY+ R ++RR +     LG  
Sbjct: 305 FGDHIDEFVKVIYLYSVLDHARTMSLMLSDGVVPSNTGEGYLARLVIRRLLRNLVRLGVE 364

Query: 319 EPLMMHLLPALCTEMGSAYPE------LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
              +  ++  L       +            +  I +    E  +F   + RG+ ++D +
Sbjct: 365 PARLTDVVQELLDRQIKYWKNDYIYGKFEAHRDYIMDVAAVETAKFIDAVSRGIDIVDKL 424

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           L      + L  D    +YD+HG+P + + +     G+       F   + ++ S +   
Sbjct: 425 LKK---RKSLGLDDLITIYDSHGIPPEFVAERAREHGVEVSIPGDFYSKIAQRHS-SPGV 480

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
            +                ++  T  +                             V + V
Sbjct: 481 LVKEKEHEFPSDVVEWASRFPGTVRV--------------------FHMDPYLTSVEARV 520

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
             +                 +V D+T  Y  AGGQ  DTG     G R  +  V K    
Sbjct: 521 LGVRD-------------RYLVLDRTVMYPWAGGQDHDTGFIEVAGRRYAVEYVGKVGNV 567

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I           +     + ++ID+  R +L  +H+ATH++  A   +LG HV Q G+  
Sbjct: 568 IIHVLKEPV--EIAEGTVVNVSIDWYRRYRLMKHHTATHVVLAAARRVLGDHVWQAGAEK 625

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--T 670
           T +  R D+TH K +T  EL+ IED  N +I   + +    M + +A +     +     
Sbjct: 626 TVEKARLDITHHKSLTPEELRRIEDLANKLIEDRINLRFHEMGKFEAESKYGLRIYQGGA 685

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
            Y+  +R+V +   D        C GTHV +T EI  + IV+   I+ G+ R+E I   R
Sbjct: 686 VYSPILRIVEIPGWDA-----QACFGTHVHNTSEIGGVKIVNAERIQDGVVRLEFIASTR 740

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-----VED 785
              H+   + ++    + +   QG++   V ++  E+ ++  +  + + +L         
Sbjct: 741 LVDHIRSLEGEIDEALAVMGARQGDLASAVRKMSREHAEVSKLLEEYRARLADTLVSQGV 800

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                I  V+     +   D K L+ V++ L  K      +L  I   +   + +   + 
Sbjct: 801 AGKTSICGVDVTYVELPVRDEKLLRQVLEELSLKQG----ILTVIDAGETLEIAVKPEKA 856

Query: 846 LLDRFNAVDLARLSAKV-LGGGGGGGRPH 873
                   DL + +A++   G  GGG+P 
Sbjct: 857 SEKNI---DLRKTAARLSAKGAKGGGKPD 882


>gi|297527343|ref|YP_003669367.1| alanyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256259|gb|ADI32468.1| alanyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 909

 Score =  367 bits (941), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 188/920 (20%), Positives = 360/920 (39%), Gaps = 165/920 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
                R  F+EFF  +GHE +    ++      L  T + ++ F+   T G   P Y  +
Sbjct: 59  TFDEARRKFIEFFTSHGHEYVEPYPVLARWRNDLYLTIASIIVFQPAVTEGIIDPPYNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             VQ  VR      D+DNVG T  RH T FEM G+ +F       Y+    +Q A+D  T
Sbjct: 119 VIVQPSVRLE----DIDNVGLTFGRHLTSFEMGGHHAFNKKNQYVYWVNETLQYAFDFFT 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   ++   L   V+                           +++W     G  GP  E+
Sbjct: 175 KTLGIEPENL---VF--------------------------KESWWEGG--GNAGPAYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
             D                   +E+  LVFM++ +    E+   P + +DTG G+ER+A 
Sbjct: 204 LVD------------------GLELATLVFMKY-KIVNGEKVKNPVLVVDTGYGIERIAW 244

Query: 236 VLQEKTNNY-----------------------------------DIDLFKHLIQASEQVT 260
             Q     +                                   +I+    L    E++ 
Sbjct: 245 FTQRTPTAFHTIFGSLLETYKNILGIDEPPYDVLKKIVYLLSDKEIEDIYMLNNYLEEIN 304

Query: 261 GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
             +Y  +  + +N    +DH+++ S +++DGI+P+N G GY+ R ++RR +     LG  
Sbjct: 305 YSEYYKSLVDAINLYTALDHVKTLSLMLSDGIVPSNSGEGYLARLVIRRLLRTLIRLGIK 364

Query: 319 EPLMMHLLPALCTEMGSAY------PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
              +  ++  L  +    +       +  +    I + +  E  ++   + RG+  +D  
Sbjct: 365 VSALEDVVLELIDKQAKYWKGKYVYDKFHRRLDYILDVMSYETRKYVDIITRGIREIDRF 424

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           +      + L  +   ++YD+ G+P +I+ +     G       +F   +  +   ++A 
Sbjct: 425 IKK---KKKLVLNDLIQIYDSKGIPPEIVAERAKYYGQQIRVPSNFYSLIAARHGGSQAL 481

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                    ++I      K+  T+ + ++     +                         
Sbjct: 482 VKEKEHELPDEI-VEWASKHNPTKRLFHENPYLRRASA---------------------- 518

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                  +I++         V+FDQT FY  AGGQ  D G  I     + +  V K  E 
Sbjct: 519 -------KILDSLNE----YVIFDQTIFYPRAGGQDHDKGYIILGDEHIPVKHVYKVGEV 567

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I    A   +  +     + L ID+ NR +L  +H+ATH++  A   +LG HV Q G+  
Sbjct: 568 IVHQLATRRK--IEPGTRVELVIDWYNRYRLMRHHTATHIVLGAARKVLGEHVWQAGAEK 625

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--T 670
           T +  R D+TH K +++ E++ IE+  N +I + + +    + + +A       +     
Sbjct: 626 TTEKARLDITHYKSLSNEEIRKIEELANKVIDEKIDLRFYFLPKFEAEKKFGLKIYQGGA 685

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
            Y+  +R+V +   D        C GTHV +T E+  + I+    I+ G+ R+E I   R
Sbjct: 686 VYSPILRIVEIPGWDA-----EACFGTHVYNTSEVGGIKIIKSEKIQDGVIRLEYIASTR 740

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVEDL- 786
              ++    +++     FL V   ++     +V E  ++Y+ L + + K   +  +  L 
Sbjct: 741 LPEYISDLQKEVDKALEFLGVKGSSISIAAKKVSEELDKYKVLLIQYRKLFKEKLLNQLL 800

Query: 787 -SCHKIADVNFMSHIISEVDSKEL-KSVMDA--LQKKIQSGIIMLVGISKEKKASVLIVV 842
               +I  +  +     +++ ++L KS+++   L+K+      +L     +K   + I  
Sbjct: 801 GEAQEICGLKTVVLE-KQLEDEQLYKSIIEELSLRKR------VLTIYVSDKFVEIAIHP 853

Query: 843 TEDLLDRFNAVDLARLSAKV 862
            E    + +   L ++   +
Sbjct: 854 DEARNRKLDLRSLVKILKNI 873


>gi|135091|sp|P24075|SYA_RHILV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|48924|emb|CAA42579.1| alanyl-tRNA synthetase [Rhizobium leguminosarum]
          Length = 201

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 140/201 (69%), Positives = 164/201 (81%), Gaps = 1/201 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR GGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRVGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI+T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRISTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEI 200
           E + GG PGS  E+G+R++E 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEF 201


>gi|90076782|dbj|BAE88071.1| unnamed protein product [Macaca fascicularis]
          Length = 410

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 109/291 (37%), Positives = 161/291 (55%), Gaps = 21/291 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIGRLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE  +D+           +++    +EIWNLVF+Q+ ++       LPK S D G  
Sbjct: 185 GPCSETHYDRI-GGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSTDLGEA 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLR 280
           L   A + Q     +  D  +  +++ ++V       +     + +++  +
Sbjct: 244 LA-TAVIPQ-----WQKDELRETLKSLKKVMDDLDRASKADVQKRVLEKTK 288



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 3/145 (2%)

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
             +  ++++ ++  +      ++++    + L          +  + S   +K L   + 
Sbjct: 259 ETLKSLKKVMDDLDRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALK 318

Query: 815 ALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
             +        ML  +  E  K + L  V ++  +R   A +  +  +  L  G GGG+ 
Sbjct: 319 LFKTHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKD 377

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
             AQ+ G N     +A+    SF +
Sbjct: 378 VSAQATGKNIGCLQEALQLATSFAQ 402


>gi|241563387|ref|XP_002401683.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215501875|gb|EEC11369.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 207

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 132/203 (65%), Positives = 159/203 (78%), Gaps = 1/203 (0%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLV 204
           I GGLPG+  E+G+R+IEIWN+V
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMV 207


>gi|309807409|ref|ZP_07701372.1| alanine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|308169331|gb|EFO71386.1| alanine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
          Length = 632

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 208/638 (32%), Positives = 331/638 (51%), Gaps = 42/638 (6%)

Query: 268 NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
           + V  ++I DH+R+ SF IADG LP+N GRGYVLRR++RRA    + LG     +  L+ 
Sbjct: 28  DDVAFKIIADHVRAVSFAIADGALPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVG 87

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGD 385
            +   M S YPE++  +  +E+ +++E++RF +TL  GL LLD ++  +   K   L+G 
Sbjct: 88  VVGEIMKSHYPEVVDQQAFVEKVIKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGK 147

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
            AFKL+DT+G P ++  +     GL  +D   F+  ++ Q+ RAR     L S  ++ I 
Sbjct: 148 DAFKLFDTYGFPYELTFEAAQDAGL-VVDKEEFDAEMKAQKERARKARGNLQSMGSQDI- 205

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
            +L      + F  Y  L+                         + +  IV   ++V++ 
Sbjct: 206 -TLMNIKDESVFE-YHQLQEDH----------------------AKLLDIVVDDKLVDQV 241

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGI 564
             G++  ++FD+TPFYAE GGQ+ D G        L    +  + A      H +     
Sbjct: 242 N-GEQATLIFDKTPFYAERGGQVADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLP 300

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           ++     VL +D Q RR L  NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  
Sbjct: 301 MQKGEEYVLKVDEQRRRGLKHNHTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSL 360

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +P+T  E+ ++E  VN+ I   +PV T I ++E  +  GA AL G KY+++VRVV +   
Sbjct: 361 EPMTKREIATVERLVNEKIWAEIPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI--- 417

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S   CGGTH  +T +I +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK 
Sbjct: 418 --NDFSIEFCGGTHCENTDQIGMLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKE 475

Query: 745 LASFLKV-SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMS 798
           +   +K     ++  +V  + +  R+ Q    + K Q+N    S        I  +  ++
Sbjct: 476 IQDEVKATKVDDIQNKVVALEDALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIA 535

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
            I+      +L+ + D  + +  S +++L      K   ++ +  + +     A DL ++
Sbjct: 536 KIVDVDGMNDLRELSDNWKTQNLSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKI 595

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +A + GGGG GGRP+MAQ+GG N     +A+  V + L
Sbjct: 596 AAPIFGGGG-GGRPNMAQAGGKNPAGLAKALETVLNEL 632


>gi|47210409|emb|CAF91677.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1194

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 115/303 (37%), Positives = 164/303 (54%), Gaps = 54/303 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H  + SS+ +P +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIRQKFIDFFRRHEHVYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPAHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK-------------- 103
                  QK      KHNDLD+VG+   HHTFFEMLG++SFG YFK              
Sbjct: 66  LRRAANTQK------KHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKVAGRAPGPGLARPP 119

Query: 104 -------------------ERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA-------- 136
                                A Q+A +LLT+EF +   RLY+T +  DEEA        
Sbjct: 120 LYPADGDALLRSSAPPPLQHLACQMALELLTQEFGIAIERLYVTYFGGDEEAGLEPDLEC 179

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
            ++W  + G+   +I+  +  DNFW M +TGPCGPCSE+ +D+           + +   
Sbjct: 180 KQIWLDL-GMDEARILPGSMKDNFWEMGDTGPCGPCSEMHYDRI-GGRDAAHLVNMDDPN 237

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +E+WNLVF+QF ++++     LPK SIDTGMGLER+ +VLQ+K +NYD DLF    QA 
Sbjct: 238 VLEVWNLVFIQFNRESETVLKPLPKKSIDTGMGLERLVSVLQDKMSNYDTDLFLPYFQAI 297

Query: 257 EQV 259
           ++V
Sbjct: 298 QKV 300



 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 127/480 (26%), Positives = 196/480 (40%), Gaps = 67/480 (13%)

Query: 297 RGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           R YVLRRI+RRA+ Y+   LG        L+  +   +G A+PEL +   ++++ +  E+
Sbjct: 409 RSYVLRRILRRAVRYSHEKLGAQRGFFATLVDVVVDSLGDAFPELRKDPEMVKDVINEEE 468

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            +F KTL RG  +LD  +S LG  + + GD A+ LYDT+G PLD+   I   +GL+ +D+
Sbjct: 469 VQFLKTLSRGRRILDRKISSLGPSKTVPGDTAWLLYDTYGFPLDLTALIAEEKGLS-VDL 527

Query: 416 ISFNQALEEQR---SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
            +F +  +  +     A   S G   G  + I   +            + LR  K    D
Sbjct: 528 AAFEEERKAAQVGPLAAPLRSQGKAGGDEDHIMLDIYAI---------EDLRNRKLAVTD 578

Query: 473 ----RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                +    +    +    S+ V A+ +      E  SG +         F        
Sbjct: 579 DSPKYRYASDEGGKYVFEPASATVLALRRDRAFCAEVTSGGQ----SFDEGFMVREDDST 634

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD         +++           +V H     G LR    + L +D   RR +  NH+
Sbjct: 635 GDRMEFTVKNTQVRGG---------YVLHVGTVYGTLRVGDQVTLHVDEARRRLIMSNHT 685

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+L+ AL  +LG    Q GS + PD LRFD T    +++ E++  E+    +I +   
Sbjct: 686 ATHILNFALRGVLG-EADQRGSLVAPDRLRFDFTAKGALSTGEVRRTEEIACALIKEAKV 744

Query: 649 VVT------------------------RIMNREDAIASGAAALLGTKYNDRVRVVSVE-- 682
                                           +     G  A+    Y D VRVVS+   
Sbjct: 745 RGAGGLGAWLLAFALSRALSPQTVYALEAPLAQAKAIQGLRAVFDETYPDPVRVVSIGVP 804

Query: 683 ---------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
                       G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A  
Sbjct: 805 VEELLKDPDSTAGALTSIEFCGGTHLQNSAHAAPFIIVSEEAIAKGIRRIVAVTGAEAHK 864



 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 806  SKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTED-LLDRFNAVDLARLSAKVL 863
            S+ L   +  L+ +      ML  +  E  K + L  V ++       A +  +    +L
Sbjct: 1097 SQALNESLKLLKAQSPQTAAMLFTVDPEAGKVTCLCQVPQETASRGLKASEWVQDLCPLL 1156

Query: 864  GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
              G GGG+   AQ+ G N ++  +A+     F +
Sbjct: 1157 -DGKGGGKDLSAQATGKNTHRLQEALQAARQFAR 1189


>gi|218291266|ref|ZP_03495242.1| Alanine--tRNA ligase [Alicyclobacillus acidocaldarius LAA1]
 gi|218238814|gb|EED06026.1| Alanine--tRNA ligase [Alicyclobacillus acidocaldarius LAA1]
          Length = 243

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 102/217 (47%), Positives = 139/217 (64%), Gaps = 10/217 (4%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M ++    IR  F +FF + GH +LPS  L+P +DPTL++ N+GM P K  F G+E P  
Sbjct: 1   MKSLTGQEIRRAFKQFFAERGHMVLPSFPLVPKDDPTLLWINAGMAPLKPYFDGREIPEV 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +   QKC+R     ND++ VG T RH TFFEMLGNFSFG YFK  AI  AW+ LT+  
Sbjct: 61  PRIVDAQKCIRT----NDIEEVGHTARHQTFFEMLGNFSFGDYFKLEAITWAWEFLTQVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +LD  R+ +T++++D+EAF++W +  GL A +I R    DNFW + E GPCGPCSEIF+D
Sbjct: 117 ELDPDRISVTIHEDDDEAFEVWHRRVGLPASRIYR-GKEDNFWEIGE-GPCGPCSEIFYD 174

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNK 213
           +GE    G P      + +R++EIWNLVF QF +   
Sbjct: 175 RGEAFGCGSPDCKPGCDCDRFLEIWNLVFTQFNKNAG 211


>gi|296242680|ref|YP_003650167.1| alanyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
 gi|296095264|gb|ADG91215.1| alanyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
          Length = 908

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 178/931 (19%), Positives = 343/931 (36%), Gaps = 168/931 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  F+ F    GH ++    ++      L    + ++ F+   T G   P +  +
Sbjct: 59  SLQEVREKFINFLVSKGHGVVDPYPVLARWRNDLYLNIASIIVFQPAVTEGIVDPPHNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             +Q  +R      D+DNVG T  RH T FEM G  +F       Y+ E  I    +   
Sbjct: 119 VIIQPSIRLS----DIDNVGLTFGRHLTSFEMGGMHAFNKPGKMIYWVEGIIDNTIEFFN 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  +D   L   V+                           + +W     G  GP  E+
Sbjct: 175 KEIGIDLEDL---VF--------------------------KEGWWEGG--GNAGPAPEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
             D                   +E+  LV M + +    +    P + +D G G+ER+  
Sbjct: 204 LVD------------------GMELATLVHMMY-KTVDGKYIENPVLVVDCGYGIERITW 244

Query: 236 VLQEKTNNYDI--------------------DLFKHLIQASEQ----------------- 258
             Q+    +                      D+ K  +                      
Sbjct: 245 FTQKSPTGFHAIYGRLVDEYKDVLGVEEPPHDVLKKAVYLLSDKELNSVAEYVKALEEYG 304

Query: 259 VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
            +        I+     +DH+R+ S +++DGI+P+N G GY+ R ++RR       LG  
Sbjct: 305 FSEHTASFTKIIYLYGSLDHVRTISLMLSDGIVPSNSGEGYLARLVLRRLFRNLVNLGVE 364

Query: 319 EPLMMHLLPALCTEMGSAYPE------LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
              +  ++  L  +    +          + +  I + +  E  +F  ++ RG+ ++D  
Sbjct: 365 SNKLADIVQELVDKQIKYWKNDYIYGKFEKHRDYILDVVALEANKFVDSVYRGVEIVDKY 424

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           L      + L  +   ++YD+HG+P + + +    +G+       F   + ++ S A   
Sbjct: 425 LKR---KKALGEEDLIEIYDSHGIPPEFVVERARGKGVEVRVPGDFYSKIAQRHSAAPLV 481

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                    E   +   E +  T  + +     +                     +++ V
Sbjct: 482 KEKEHEFPEELAKW--AEGFPETVRVFHQDPYAT--------------------SINAKV 519

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
             ++                V+ D+T  Y  AGGQ  DTG  + +G    +  V K    
Sbjct: 520 LGVLGN-------------YVILDRTIMYPWAGGQDHDTGVLVFNGKAYPVKYVGKIGGV 566

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I            +    + + I++  R +L  +H+ATH++  A   ILG HV Q G+  
Sbjct: 567 IVHELEEKPG--FKPGDEVEVKIEWFRRYRLMRHHTATHVVLAAARKILGDHVWQAGAEK 624

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--T 670
           T +  R D+TH KP+T  E+  IE+  N II   + +    M + +A +     +     
Sbjct: 625 TVEKGRLDITHHKPLTRKEIAEIEELANKIIDSRIQLRFNYMGKFEAESKYGLKIYQGGA 684

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
            Y+  +R+V +   D        C GTH+ +T EI  + I++   I+ G+ R+E + G R
Sbjct: 685 VYSPVLRIVEIPGWDA-----QACFGTHLQNTAEIGGVKIINAERIQDGVIRLEFVAGTR 739

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
                   +E+ +     +     ++V    ++ E   +L+   A  + ++  + L  + 
Sbjct: 740 LAELARNMEEEREKALEAMGSPHKDIVVAAGKLRESLSRLEETVATYR-RILADALVSNA 798

Query: 791 IADVNFMSHIISEV------DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           +     +  + + +      D K +K+V++ L  K ++  ++  G        + +   +
Sbjct: 799 LNTKRVVCGVETTLAETPVEDEKLVKTVLEDLSLKHKTLAVVFTG----DMVEIAVDPGK 854

Query: 845 DLLDRFNAVDLARLSAKVL--GGGGGGGRPH 873
            +    N   L +  ++ L   G  GGGR  
Sbjct: 855 AVEKGIN---LLK-ISEALRSLGAKGGGRSD 881


>gi|225629791|ref|ZP_03787728.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591355|gb|EEH12458.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 535

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 237/564 (42%), Positives = 333/564 (59%), Gaps = 35/564 (6%)

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV 276
             LPK  IDTGMGLER+A V+Q   +NYDIDLF  LI  S++  G      N + H++I 
Sbjct: 3   HKLPKKCIDTGMGLERIAAVMQNVHDNYDIDLFSALISKSQEYCGRT---ENKIAHKIIA 59

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DHLR+++FLIA+G+LP NEGR YVLRR++RRA  Y  LLGY + L+  + P L     SA
Sbjct: 60  DHLRAAAFLIAEGVLPGNEGRNYVLRRLIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSA 119

Query: 337 Y--PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394
           Y   EL++AK LIE TL+SE+E F  TL +G+ LL+   + L   + L G+ AFKLYDT+
Sbjct: 120 YMGAELVRAKSLIETTLKSEEENFKDTLMKGINLLEKFTTDLKSGDTLPGESAFKLYDTY 179

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G PLDI  DIL  +     D   F+ A+ EQ+ RARA   G G  + E++WF L  K+G 
Sbjct: 180 GFPLDITLDILKEK-KINFDQKGFDDAMGEQKERARAKWAGSGEKSVEQVWFDLINKFGK 238

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEV 513
           T+F+GY+                            + + AIV  + E+++ A  G+K+ +
Sbjct: 239 TKFVGYE----------------------FNEVSDAKILAIVSSKNEVIDSAKEGEKITI 276

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+TPFY E+GGQ+GDTG  I     + I +   K   +++H  IV+ G +    ++  
Sbjct: 277 ILDKTPFYGESGGQVGDTGNLIKSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAA 336

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +ID + R+ L  NHSATHLLH  L  ILG HV+Q GS + PD LRFD +H+  +T  +L 
Sbjct: 337 SIDKERRQTLRRNHSATHLLHFTLRKILGDHVTQKGSLVAPDKLRFDFSHNTQVTQDQLF 396

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +ED VN +I +NL   T+I +   AI  GA AL G KY+D+VRVV +        S  L
Sbjct: 397 LVEDMVNSLIRENLSTSTKIQSMNQAIDEGAMALFGEKYSDQVRVVKIGD------SREL 450

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHV  TGEI L  IV+ESS+  G+RRIEA+TGQ A +++   +  LK +A F+K   
Sbjct: 451 CGGTHVEHTGEIGLFKIVTESSVAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPV 510

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKR 777
             +  R+  + +E++K +      
Sbjct: 511 SEITSRLSILSQEHKKSETKIKNL 534


>gi|241998230|ref|XP_002433758.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215495517|gb|EEC05158.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 237

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 138/235 (58%), Gaps = 24/235 (10%)

Query: 1   MSNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56
           M+  + IR  F++FF +   H  + SSS+IP +DPTL+FTN+GM  FK IF G   P   
Sbjct: 3   MTTAAEIRQQFIDFFVQKYDHLHVRSSSVIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSD 62

Query: 57  --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK--------ERA 106
              Y+ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG +FK        +  
Sbjct: 63  AGKYKRVVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDFFKANSSFSHSKEI 122

Query: 107 IQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTND 158
              AW+LLTK + L   RLY+T +        + D E  ++W  + G+  ++I+  +  D
Sbjct: 123 CSWAWELLTKVYKLQGERLYVTYFGGNEAAGLEPDLECKQIWMNL-GVPEERILPGSMKD 181

Query: 159 NFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           NFW M ETGPCGPCSEI +D+           + +    +EIWNLVF+Q+ +   
Sbjct: 182 NFWEMGETGPCGPCSEIHYDRI-GGRNASHLVNADVPDVLEIWNLVFIQYNRCVD 235


>gi|218662503|ref|ZP_03518433.1| alanyl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 478

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 226/495 (45%), Positives = 324/495 (65%), Gaps = 35/495 (7%)

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
           ++L+G+ AFKLYDT+G PLD+ QD L AR   G+DI  F  A++ Q++ AR+H  G G  
Sbjct: 1   DMLDGETAFKLYDTYGFPLDLTQDALRAR-EIGVDISGFTDAMQRQKAEARSHWAGSGEQ 59

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
            TE IWF LKEK+GAT+F+GYD                       T    ++V+AIV+ G
Sbjct: 60  ATETIWFELKEKHGATEFLGYD-----------------------TETAEAVVQAIVKDG 96

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            +  EA +G KV++V  QTPFY E+GGQ+GDTG    D  +++I+D QK+ EG+FVH   
Sbjct: 97  AVAAEAKAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHGKIEISDTQKRGEGLFVHQGT 156

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V  G+++   ++VLT+D+  R +L  NHSATHLLH AL  +LG+HV+Q GS + P+ LRF
Sbjct: 157 VIDGVVKDGDAVVLTVDHARRSRLRANHSATHLLHEALREVLGTHVAQKGSLVAPERLRF 216

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           DV+H KP+++ ELK +ED  N+I+ QN PV TR+M+ +DAIA GA AL G KY D VRVV
Sbjct: 217 DVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDAIAEGAMALFGEKYGDEVRVV 276

Query: 680 SVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +       + G  +S  LCGGTHVS+TG+I L+ ++ ES++ AG+RRIEA+TG+ AR +
Sbjct: 277 GMGEGVRGAKAGKPYSIELCGGTHVSATGQIGLIRVLGESAVGAGVRRIEAVTGESAREY 336

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED------LSC 788
           L  QDE++K+LA+ LKV  G V+ RVE + +E RKL+   A  K +L +         + 
Sbjct: 337 LAEQDERVKALAASLKVQPGEVLSRVEAMMDERRKLEKELADAKRKLAMGGGQGGSVDAV 396

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
            ++A V F+   IS VD K+LK + D  +  I SG++ LVG+S + KAS ++ VT DL++
Sbjct: 397 REVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVALVGVSDDGKASAVVAVTPDLVE 456

Query: 849 RFNAVDLARLSAKVL 863
           R++AVDL R+++  L
Sbjct: 457 RYSAVDLVRIASAAL 471


>gi|22096202|sp|Q97AH7|SYA_THEVO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 876

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 184/860 (21%), Positives = 329/860 (38%), Gaps = 170/860 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            +S +R  F +FF+K GH+LL    ++P     ++  N+ +  F+  + +G  KP    +
Sbjct: 61  TLSEMRKAFFDFFEKRGHKLLEPYPVVPRWREDVLLVNASIYDFQPHVTSGIVKPPGNPI 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R     ND+D VG T RH T FEML + +F       Y+KE  ++ +++ LT 
Sbjct: 121 VMSQPSIRM----NDVDLVGVTGRHLTSFEMLCHDAFNSKNDFVYWKEETVRYSYEFLTD 176

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D                                IT  +  WS    G  G   E+F
Sbjct: 177 GLGIDGS-----------------------------LITYKEKPWSGG--GNAGNALEVF 205

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMG 229
                              R +E+  LVFM  ++  + E  I       +    +DTG G
Sbjct: 206 V------------------RGLEVATLVFMDMKEDQEGEVEIEGTRYTKMDMQIVDTGYG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------ 271
           LER+  + Q     Y   ++  +I    + + ++   N  ++                  
Sbjct: 248 LERLTWLSQGTPTVYQA-IYPEIIDYVLENSYVESIDNEFLSDVVRVSVMREPYDEAFVL 306

Query: 272 ----------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
                                   V++DH RS   +    ++P+N   GY+ R ++RR++
Sbjct: 307 STLGEKYPNALERFEKAKKVRDIFVLIDHARSLMHMFEAFVIPSNVKVGYLARLLIRRSI 366

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
              + +G+   L+ +L+     E+      L      I++ L  E +++ +   RG  ++
Sbjct: 367 RAQKNIGFKGSLI-NLIERNYNELKDIVKPL--PIEFIKDVLSIEMQKYSELEKRGQQVI 423

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
           + +L      +I   D    LYD+HG+  D++  +   +GL  +   +F+  +  +    
Sbjct: 424 EKILKTKKSIDI---DDLVLLYDSHGISPDVVAAMAAEKGLKVMIPPNFHAMVISRHE-- 478

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
                      + K++ ++      T+ + YD     +F                     
Sbjct: 479 ----KKSALKKSAKVYPNI-----ETRTLYYDDSTMREFTG------------------- 510

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                +  +G  V           + D+T FY E GGQ  D G     G ++ + DVQK 
Sbjct: 511 ---LVMYSKGNEV-----------ILDKTAFYPEGGGQPADHGYFEFKGKKINVLDVQKH 556

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              I         G +   + +   ID++ R +L ++H+ATHLL   L  ILG HV Q+G
Sbjct: 557 GNAIVHKL----DGEIPEGVRVKGVIDWERRSRLMVHHTATHLLLGVLRDILGDHVWQSG 612

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
                     D+TH K I    +K IE  + ++I +  PV  + ++   AI      L  
Sbjct: 613 VQKDVSESHLDITHYKRIDEDTIKKIEHRIFELITEGRPVSVKNLDWYMAIGKYGFRLFE 672

Query: 670 --TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                + +VRVV +E  D        CGGTH+ +   I +L I    +I+  I RI  + 
Sbjct: 673 GGVPLSPKVRVVEIEGVDA-----EGCGGTHLKNISSIGVLKIKKIEAIQENIYRITFVA 727

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G  A        +    +++  K +       VE    E  K++      + +L  E++ 
Sbjct: 728 GVPALELFEDSYDLAYRVSNISKKNIDQAGDFVENTVRELSKIKRDLDSARTKLIEEEI- 786

Query: 788 CHKIADVNFMSHIISEVDSK 807
             K   +      I  ++++
Sbjct: 787 -RKSNSIKLGEKEIPAIEAE 805


>gi|13541650|ref|NP_111338.1| alanyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|14325050|dbj|BAB59975.1| tRNA synthetase Ala [Thermoplasma volcanium GSS1]
          Length = 878

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 184/860 (21%), Positives = 329/860 (38%), Gaps = 170/860 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            +S +R  F +FF+K GH+LL    ++P     ++  N+ +  F+  + +G  KP    +
Sbjct: 63  TLSEMRKAFFDFFEKRGHKLLEPYPVVPRWREDVLLVNASIYDFQPHVTSGIVKPPGNPI 122

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R     ND+D VG T RH T FEML + +F       Y+KE  ++ +++ LT 
Sbjct: 123 VMSQPSIRM----NDVDLVGVTGRHLTSFEMLCHDAFNSKNDFVYWKEETVRYSYEFLTD 178

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D                                IT  +  WS    G  G   E+F
Sbjct: 179 GLGIDGS-----------------------------LITYKEKPWSGG--GNAGNALEVF 207

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMG 229
                              R +E+  LVFM  ++  + E  I       +    +DTG G
Sbjct: 208 V------------------RGLEVATLVFMDMKEDQEGEVEIEGTRYTKMDMQIVDTGYG 249

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------ 271
           LER+  + Q     Y   ++  +I    + + ++   N  ++                  
Sbjct: 250 LERLTWLSQGTPTVYQA-IYPEIIDYVLENSYVESIDNEFLSDVVRVSVMREPYDEAFVL 308

Query: 272 ----------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
                                   V++DH RS   +    ++P+N   GY+ R ++RR++
Sbjct: 309 STLGEKYPNALERFEKAKKVRDIFVLIDHARSLMHMFEAFVIPSNVKVGYLARLLIRRSI 368

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
              + +G+   L+ +L+     E+      L      I++ L  E +++ +   RG  ++
Sbjct: 369 RAQKNIGFKGSLI-NLIERNYNELKDIVKPL--PIEFIKDVLSIEMQKYSELEKRGQQVI 425

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
           + +L      +I   D    LYD+HG+  D++  +   +GL  +   +F+  +  +    
Sbjct: 426 EKILKTKKSIDI---DDLVLLYDSHGISPDVVAAMAAEKGLKVMIPPNFHAMVISRHE-- 480

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
                      + K++ ++      T+ + YD     +F                     
Sbjct: 481 ----KKSALKKSAKVYPNI-----ETRTLYYDDSTMREFTG------------------- 512

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                +  +G  V           + D+T FY E GGQ  D G     G ++ + DVQK 
Sbjct: 513 ---LVMYSKGNEV-----------ILDKTAFYPEGGGQPADHGYFEFKGKKINVLDVQKH 558

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              I         G +   + +   ID++ R +L ++H+ATHLL   L  ILG HV Q+G
Sbjct: 559 GNAIVHKL----DGEIPEGVRVKGVIDWERRSRLMVHHTATHLLLGVLRDILGDHVWQSG 614

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
                     D+TH K I    +K IE  + ++I +  PV  + ++   AI      L  
Sbjct: 615 VQKDVSESHLDITHYKRIDEDTIKKIEHRIFELITEGRPVSVKNLDWYMAIGKYGFRLFE 674

Query: 670 --TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                + +VRVV +E  D        CGGTH+ +   I +L I    +I+  I RI  + 
Sbjct: 675 GGVPLSPKVRVVEIEGVDA-----EGCGGTHLKNISSIGVLKIKKIEAIQENIYRITFVA 729

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G  A        +    +++  K +       VE    E  K++      + +L  E++ 
Sbjct: 730 GVPALELFEDSYDLAYRVSNISKKNIDQAGDFVENTVRELSKIKRDLDSARTKLIEEEI- 788

Query: 788 CHKIADVNFMSHIISEVDSK 807
             K   +      I  ++++
Sbjct: 789 -RKSNSIKLGEKEIPAIEAE 807


>gi|255528012|ref|ZP_05394849.1| Alanine--tRNA ligase [Clostridium carboxidivorans P7]
 gi|255508281|gb|EET84684.1| Alanine--tRNA ligase [Clostridium carboxidivorans P7]
          Length = 217

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 98/221 (44%), Positives = 134/221 (60%), Gaps = 9/221 (4%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    ++ +R  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  
Sbjct: 1   MKKIGLNELREMYLKFFESKEHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             VTT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFKE AI  AW+  T+  
Sbjct: 61  TRVTTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEAIPWAWEFTTEVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L + +LY+T+Y +D+EA  LW K + +   +I R+  +DNFW     GPCGPCSEI FD
Sbjct: 117 KLPKDKLYVTIYLDDDEAHDLWVKKTDIDPSRIFRLGKDDNFWEHG-IGPCGPCSEIHFD 175

Query: 179 QGECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERF 217
           +G            + + +R +E WNLVF QF++       
Sbjct: 176 RGNEKINTVEEFLKAADEDRVVEFWNLVFTQFDKDEDGNYN 216


>gi|48477495|ref|YP_023201.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|74568036|sp|Q6L1Z4|SYA_PICTO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|48430143|gb|AAT43008.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 870

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 178/922 (19%), Positives = 335/922 (36%), Gaps = 178/922 (19%)

Query: 3   NVSSIRTTFLEFFQKNG--HELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQ 59
           NV  +R  F++FF+ +   H+ +    ++P     ++  N+ +  F+  + +G  KP   
Sbjct: 56  NVDEMRDEFIKFFENDSLPHKFVEPYPVVPRWRDDVLLVNASIYDFQPQVTSGLAKPPGN 115

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      D+D VG+T RH T FEML + SF       Y+K+  ++ ++  L
Sbjct: 116 PIVMSQPSIRML----DIDLVGKTGRHLTSFEMLCHDSFNYDDNYIYWKDETVRYSFRFL 171

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T+   +D   L IT                             +  W     G  G   E
Sbjct: 172 TERLRVDP--LLITY---------------------------KEKPWFGG--GNAGNALE 200

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTG 227
           +F                     +E+  LVFM  ++    +          +P   +DTG
Sbjct: 201 VFV------------------MGLEVATLVFMDLKEDKNGDIELEGTRYSRMPLRVVDTG 242

Query: 228 MGLERMATVLQEKTNNYDI--------------------DLFKHLIQASEQVTGMKY--- 264
            GLER+  +       Y+                     ++   + + + ++        
Sbjct: 243 YGLERLVWLSTGTPTVYESIYKRSLDYIIKNSNAEYVSPEIMARISEIAAEIDPYSDELV 302

Query: 265 --------------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                           +NI +   +VDH R+   + +D ++P+N   GY+ R ++RR+  
Sbjct: 303 LSRINKTGDKKFMEMLDNIRSAYGLVDHARTLLLMFSDYVIPSNVKVGYLARMLLRRSFR 362

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
           +   + +   +                         I   ++ E E++ + L     ++ 
Sbjct: 363 FMEKIKFNGSINDIFDAVYDEFNKIIKNYDK---DFINNIIKIETEKYKEMLRSAPEIIR 419

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID-IISFNQALEEQRSRA 429
             ++       ++ +   K+YDT+G+PL+I+  +        +D   +F + L +     
Sbjct: 420 KHINK----NTISNENIAKIYDTYGIPLEIISKVFKDLTNKELDIPENFQEYLVKLHENV 475

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           +     +                G  +F G                              
Sbjct: 476 KKPEKTVKDYPDINTRPLYYNDTGIMEFTG------------------------------ 505

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                +   G             ++ +QT FY E GGQ  D G  + +G ++++ DVQK 
Sbjct: 506 ---IVMYSNGNE-----------IILNQTAFYPEGGGQPADHGYFLYNGKKIEVLDVQKY 551

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              I         G  R +  +        R QL I+HSATHLL        G HV QN 
Sbjct: 552 GNSIVHIINGSIPGHSRIKGFVDKE----RRTQLMIHHSATHLLLGICRAYFGEHVWQNS 607

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
                D  R D+TH K IT  ++K+IE+   D I  +  +  + +    AI+     L  
Sbjct: 608 VKKDIDESRLDITHYKKITEDDIKNIENMCLDAIMASKNIHVKNIEWNRAISEYGFRLFE 667

Query: 670 --TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                +D +RVV+++  D     S  CGGTH+ +T +I++L IVS  +++ GI+RI    
Sbjct: 668 GGFPLSDTIRVVTIDDID-----SEGCGGTHLKNTKDILMLKIVSTETVQEGIQRIVFTA 722

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-VEDL 786
           G  A  +       +     +LKV    +  +  ++  E  + + +    + +L  +   
Sbjct: 723 GPAALRYSQKLYSIINDEQEYLKVPPEKIPEQSIKLVRENIENKKMINSLERELAEIYIK 782

Query: 787 SCHKIADVNFMSHIISEVDSKELK-SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
           +  +I D +F       +    LK +     +  I +G  + +  S      +  +++ +
Sbjct: 783 NALRIDDESFYIKSNEILSRVILKYTGARNGRFIINTGSRIYISSSYNDADVIASMLSNN 842

Query: 846 -------LLDRFNAVD-LARLS 859
                   +   NA + L +  
Sbjct: 843 YSGSKRVAICDCNANENLIKEI 864


>gi|2656129|gb|AAC46017.1| alanine tRNA synthetase [Pseudomonas aeruginosa PAO1]
          Length = 183

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 104/183 (56%), Positives = 129/183 (70%), Gaps = 9/183 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPC 180

Query: 173 SEI 175
           +EI
Sbjct: 181 TEI 183


>gi|298242617|ref|ZP_06966424.1| Alanine--tRNA ligase [Ktedonobacter racemifer DSM 44963]
 gi|297555671|gb|EFH89535.1| Alanine--tRNA ligase [Ktedonobacter racemifer DSM 44963]
          Length = 445

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 147/451 (32%), Positives = 243/451 (53%), Gaps = 24/451 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSL-IPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + S I   +L +F+ +GH  LPS+ L +P N  +  F  +GM P       +  P    +
Sbjct: 6   SSSQIVERYLSYFRGHGHYELPSTPLAVPGNSTS--FIIAGMQPLLPYLRAETLPPSPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           ++VQ+C+R     +D++ VG  +R  + F MLGN+S G Y+K  AI++A ++L +  +++
Sbjct: 64  SSVQRCLRT----DDVEAVGSNDRKMSAFLMLGNWSIGEYWKREAIEMALEVLLQHLEVE 119

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPC 172
           + RL++TVY          D+EA   W +  G+ +++I+ + + DN W+M E  GPCGP 
Sbjct: 120 RERLWVTVYAGDEPLGLPGDDEAISEWLR-VGMPSERIVSLGSEDNLWTMGEGPGPCGPS 178

Query: 173 SEIFFDQGECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           SEIF D+G  +  G        + ER++E+WNLVFMQ+E+        LP+ +IDTGMGL
Sbjct: 179 SEIFVDRGMELGCGRATCRPGCDCERFMEVWNLVFMQYERHADGSLTTLPQRNIDTGMGL 238

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+AT+LQ   + +  D+F   ++   ++   + EG      R+IVDH+R+        +
Sbjct: 239 ERIATILQGAESVFSTDVFLPALERLRELVP-EQEGEVRRTRRMIVDHMRAVLLAGLVDV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS-AYPELIQAKLLIEE 349
            P  +GR  V+RR++RRA C  R+LG  +P +  LL  L    GS   P+       + +
Sbjct: 298 RPGRDGRSSVVRRLIRRAACQGRVLGLEQPFLGELLSPLAEGHGSLLMPQEHSQVQGLVQ 357

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            + +E+  F + L +GL LL+ V     +   ++G V F+L+   G P D+  +IL  RG
Sbjct: 358 VVTNEERMFSRVLTQGLSLLEHV--EANERGYVDGRVLFQLHAERGFPADLAAEILVERG 415

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           L+ ID   + QA ++    +R         +
Sbjct: 416 LS-IDWQRYEQARQQHSQVSRVSVKTHFQSS 445


>gi|320534361|ref|ZP_08034847.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133403|gb|EFW25865.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 277

 Score =  354 bits (909), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 113/274 (41%), Positives = 165/274 (60%), Gaps = 16/274 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L++F  N HE+ PS SL+    P+++FT +GMVPF     G E+  +   
Sbjct: 1   MRTSEIRSRWLDYFAANEHEIRPSVSLVSPE-PSILFTVAGMVPFIPYILGTEEAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVG T RH TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+++ED+ +   W +  G+ A++I  +   D  WS  + GP G C EI 
Sbjct: 116 GYGLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230
           +D+G    P G P    +G+R++EIWNLVF +F +   +         L + +IDTG GL
Sbjct: 176 YDRGPDYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
           ER+A ++Q+K N Y+ID    +I+A+E+++G  Y
Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIKAAEELSGKVY 269


>gi|316968240|gb|EFV52543.1| alanine--tRNA ligase [Trichinella spiralis]
          Length = 562

 Score =  354 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 154/462 (33%), Positives = 245/462 (53%), Gaps = 52/462 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT---GQEKPVYQ 59
           N   +R TF+++F+K  H ++ SSS+I      ++FT++G+V F++I +   G  +  ++
Sbjct: 108 NSRKVRQTFVDYFKKWDHVVVESSSMIAPKQSGMLFTSAGVVQFRSIISNINGPVQTQFR 167

Query: 60  A------VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAI-QLAWD 112
                    + QKC R     NDL++VG+   HHTFFEMLGN+SF G   ++A+    W 
Sbjct: 168 PRDHLGLAVSFQKCARV----NDLNSVGKDRTHHTFFEMLGNWSFNGTMSKQAVCNHVWQ 223

Query: 113 LLTKEFDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           LLTK + +D++RL++T +  D        EE  ++W  + G+   +++     +NFWS+ 
Sbjct: 224 LLTKIYSIDEQRLHVTYFGGDQQLGLDADEECKRIWLDVVGVQQCRLLTGNAEENFWSIG 283

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPC+EI                       E+WN+VFM++ +        LP   +
Sbjct: 284 ETGPCGPCTEIHVQLP-------------DGTLSELWNVVFMEYYKHEDGSLRKLPATHV 330

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVI 275
           DTGMGLER+  VLQ + + Y  DLFK LI + +Q+          G+        + R+I
Sbjct: 331 DTGMGLERLCAVLQNEDSAYGTDLFKPLIDSCQQLTGSPPYEGRFGVDDVTGLDSSFRII 390

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMG 334
           VDH R  +F IADG+ P ++  G+VLR+I+RRA+ +  LLG   P +   L  A+     
Sbjct: 391 VDHARMCTFAIADGLKPGHQEAGHVLRKIIRRALYHVSLLGEPRPGVFPKLCSAVVDLYA 450

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394
             YP+L  ++LLI + L  E++RF  TL +     D +         ++    F  Y+T+
Sbjct: 451 DTYPQLQSSRLLINQVLLEEEKRFSTTLTKAKARFDRMQE------PIDSKAMFLFYNTY 504

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
           GLP++++Q++   RGL   D+  F Q L+EQR R+       
Sbjct: 505 GLPMEMVQNLAERRGL-PFDLHQFEQQLQEQRRRSLTTRQKQ 545


>gi|255513796|gb|EET90061.1| alanyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 916

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 177/925 (19%), Positives = 328/925 (35%), Gaps = 163/925 (17%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTT 63
              +TF +FF+K GH +     ++      L FT + +  F+ I  G+   +  Y  +  
Sbjct: 99  EFWSTFADFFKKRGHSMAERYPVVSRWRQDLYFTIASIQDFQRIENGRVNFEYPYNPLIV 158

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG----GYFKERAIQLAWDLLTKEFD 119
            Q C+R     ND+ NVG T RH T F M G  +F     GY++   I+L +D LTK   
Sbjct: 159 PQMCLR----FNDVPNVGVTGRHFTSFMMAGQLAFNYPKEGYWRNETIRLNYDFLTKVLK 214

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + +  L  T                             ++ W+M +    GPC E F   
Sbjct: 215 VKKEALTYT-----------------------------EDIWAMGDFSEFGPCIESF--- 242

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                             +E+ N VF +FE  +  +   L    +D G G ER+      
Sbjct: 243 ---------------ANGLELVNSVFTEFEYSS-GKVSELKGKVVDVGWGFERLMWYASG 286

Query: 240 KTNNYD-------------------IDLFKHLIQASEQVTGMKYEGNNI----------- 269
               YD                    +L+  +     ++   +                 
Sbjct: 287 AQTAYDPVFANELKYLYDSTGVEPNAELYSRMAGKLAEIDLSEENRRQETELEVARAAGI 346

Query: 270 ------------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                            I DH R+  F I+DG LP+N G GY LR ++RR   ++     
Sbjct: 347 SEREYNEIILPNQALYAIADHARTFLFAISDGALPSNVGGGYNLRILLRRIFDFSERYKL 406

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
              +  HL+    +++ S Y ++ ++     + +  E  R+  T  +   ++  +L    
Sbjct: 407 KFDMQ-HLMEITASDLKSTYGDMAESIPEAAKIIELERSRYSATRAQARRIVGSLLEKSH 465

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
               ++      +Y+++G+  + +  +   +G+      +    +             + 
Sbjct: 466 GTSAIDAKTLNTMYESNGITPEFISAVAAEKGIKIEIPETAYSKIL--------KGDFVE 517

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
               +K      E    T+ + Y                             + V     
Sbjct: 518 KEKKQKKLDIGTEGIKPTEKLFY----------------------SFAEKAEATVV---- 551

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
                      +   VV D+TPFYAE+GGQ  D G   G  +            G  + H
Sbjct: 552 ---------KAENGFVVLDRTPFYAESGGQEADHGRIGGLEVTDVQN------IGGVIVH 596

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +    +      +   +D + R +L  +H+ATHL+  A   +LG H  Q G+  +    
Sbjct: 597 EVKGSPLPSKGSKVHCEVDRERRLRLMAHHTATHLVSAAARAVLGKHAWQEGAKKSATKA 656

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDR 675
             D+ H + ++  ++K IE   N  I   + V    M R++A  S   ++       +  
Sbjct: 657 HIDIAHYEKLSDRQIKEIESTANGFILHGIKVTMHEMKRKEAEESFGFSIYQGHGMPSGV 716

Query: 676 VRVVSVEYEDGGVHSSALCGGTH-VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
           +R+V +   DG +  +  CGG H +    EI L+ I     I  GI RIE + G  A  +
Sbjct: 717 LRIVEIRDLDGKLIDAEACGGLHLMGRESEIGLIKITGSYRIHDGIDRIEYVAGIAAEDY 776

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-D 793
           + G +  +  +A         +  R++    E  K +   ++ +  +   +         
Sbjct: 777 IKGMEASIGEIAGTFGADAAGITPRIKAKLAELEKYRSHISELETAIASLESERLLAKPG 836

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
              ++ +  + D + L+++   +    +  + +L     +    V+ V   +  D   A+
Sbjct: 837 SRIVAKL--QYDRQLLRAIATRIADSRKDSVALLFNHQGD----VVAVSGSECKDG--AL 888

Query: 854 DLARL-SAKVLGGGGGGGRPHMAQS 877
           D     +++      GGG   MA+ 
Sbjct: 889 DFVGAYASEHSLKFTGGGSRRMAEG 913


>gi|21619898|gb|AAH33169.1| AARS2 protein [Homo sapiens]
          Length = 785

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 208/800 (26%), Positives = 330/800 (41%), Gaps = 76/800 (9%)

Query: 152 IRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           +     +NFW M +TGPCGPC+EI +D                 + +E+WNLVFMQ  ++
Sbjct: 1   LSFGPQENFWEMGDTGPCGPCTEIHYDL---------AGGVGAPQLVELWNLVFMQHNRE 51

Query: 212 NKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------M 262
                  LP+  +DTGMGLER+  VLQ K + YD DLF  L+ A +Q            +
Sbjct: 52  ADGSLQPLPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGV 111

Query: 263 KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPL 321
             EG     +RV+ DH+R+ S  I+DG+ P   G   VLRRI+RRA+ ++   L      
Sbjct: 112 ADEGRTDTAYRVVADHIRTLSVCISDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGF 171

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
           +  L+P +   +G AYPEL +    I   +  ++  F  +L+RG  ++D  L  LG  ++
Sbjct: 172 LGSLVPVVVETLGDAYPELQRNSAQIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDM 231

Query: 382 LNGDVAFKLYDT--HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
              +VA+ L      GLPLD+++ +L  +G+          A EE + RAR        G
Sbjct: 232 FPAEVAWSLSLCGDLGLPLDMVELMLEEKGVQLDSAGLERLAQEEAQHRARQAEPVQKQG 291

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQ 498
               +W  +    G  Q  G                  +           + V  +  + 
Sbjct: 292 ----LWLDVH-ALGELQRQG----VPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYTED 342

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHH 557
           G  V     GQ+  ++ D+T FYAE GGQ  D G         +     + +  G F+ H
Sbjct: 343 GTAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILH 402

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             V    LR    + L +D   R      H+ATHLL+ AL   LG    Q GS + P+ L
Sbjct: 403 EAVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQL 462

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R DVT   P+T  +L+++E+ V + + Q+  V    +             L   Y D VR
Sbjct: 463 RLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVR 522

Query: 678 V----------VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V          +    +     S  LC GTH+  TG +  L I+ +  +  G  R+ A+T
Sbjct: 523 VVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVT 582

Query: 728 GQ---RARSHLMGQDEKLKSLASFLKVSQGNVVGRV-----------------------E 761
           G+   +AR       +++K+    L +   +V   +                        
Sbjct: 583 GEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRR 642

Query: 762 EIWEEYRKLQLIH--AKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDA 815
           E+    + LQ     A RKLQ+        ++    +    +   +S      L  V+  
Sbjct: 643 ELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQ 702

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           L ++  S  ++L+      K      V +  +  F A   A      +GG   G R  +A
Sbjct: 703 LCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVA 761

Query: 876 QSGGPNGNKADQAIAGVASF 895
           Q  G   +  + A++   ++
Sbjct: 762 QGTGSTTD-LEAALSIAQTY 780


>gi|227538396|ref|ZP_03968445.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241743|gb|EEI91758.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 599

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 202/639 (31%), Positives = 332/639 (51%), Gaps = 55/639 (8%)

Query: 268 NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLL 326
             +  RV+ DH+R+ SF IADG LP+N   GYV+RRI+RRA+ YA   L +  P +  L+
Sbjct: 7   TDIAMRVLSDHIRAVSFAIADGQLPSNNKAGYVIRRILRRAVRYAYTFLNFKTPFINELV 66

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
           P L  E    + ELIQ +  +++ +  E+  F +TL  G+   +        +  + G+ 
Sbjct: 67  PLLAKEFEGVFDELIQQQDFVQKVVLEEEVSFLRTLVTGVQRFETYAES---NTAVGGEF 123

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+L+DT+G P+D+ + +   +G+  +D+  F +AL+ Q+ R+RA      +      W 
Sbjct: 124 AFELFDTYGFPIDLTELLAREKGME-VDMAGFQEALQVQKDRSRAA-----TAIDTGDWV 177

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
           ++ E     +F+GYD L+ +  + + RKV                             A 
Sbjct: 178 AVSEDDQI-EFVGYDNLKATTEIVKYRKVT----------------------------AK 208

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
             ++ ++V   TPFYAE GGQ+GD+G  + +    +I     K E   + H       ++
Sbjct: 209 GKEQYQLVLSVTPFYAEGGGQVGDSGVLLSESTGEKIYITDTKKENGLIVH-FTNTLPVQ 267

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            E +    +D Q R     NHSATHLLH AL  +LG+HV+Q GS +  D LRFD++H   
Sbjct: 268 MEGTFEAKVDVQKRLDTENNHSATHLLHAALKEVLGTHVNQKGSLVNADILRFDISHFAK 327

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           +T  ELK +ED VN  I +N+P+   R +  + A+ SG  AL G KY D VRV++ + + 
Sbjct: 328 VTEEELKQVEDIVNAKIRENIPLKEQRHVPFQQALDSGVTALFGEKYGDYVRVITFDDQ- 386

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S  LCGGTHV +TG+I    I+SES++ AG+RRIEAITG +  + +    + +  L
Sbjct: 387 ---FSKELCGGTHVKATGQIGFFKIISESAVAAGVRRIEAITGTKCAAVIREHFDLVHRL 443

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHI 800
              L  +  + V  + ++ +E   L+    K  ++ ++      +    +I  VNF++  
Sbjct: 444 GELLH-NPKDFVSTLSKVIDENSALKKEIEKSIIEKSLALKSDLEQKIQQINGVNFLATQ 502

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARL 858
           +   +++ LK++  AL+  + +  ++L G   E K ++ +VV++ L      NA  + R 
Sbjct: 503 VELPNAEALKTLAYALKGAVDNLFLVL-GADFEGKPNLTVVVSDQLSKERGLNAGTIVRE 561

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            AK + GG GGG+P  A +GG N      AIA   ++++
Sbjct: 562 LAKEINGG-GGGQPFFATAGGKNPEGLPAAIAKAKNYIQ 599


>gi|147920593|ref|YP_685610.1| alanyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|121690502|sp|Q0W5Q9|SYA_UNCMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110621006|emb|CAJ36284.1| alanyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 875

 Score =  350 bits (897), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 194/896 (21%), Positives = 348/896 (38%), Gaps = 168/896 (18%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVYQAVTTV 64
               T+++ F++ G+  L     +      L F  +G+  F+    +G+ +P  +AV   
Sbjct: 78  EAWDTYVKTFEQWGYVPLERYPTVCRWYEDLYFVAAGINDFQPYVVSGEIEPPARAVLEP 137

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
           Q C+R     ND+DNVG T RH+T F M+G  +F       YFKE  I      LT+   
Sbjct: 138 QFCLR----FNDIDNVGITGRHYTGFIMVGQHTFNTPEKHVYFKEEGIGQIQHFLTQGLG 193

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +    +   V+ ED                           W+    G  GP  E F   
Sbjct: 194 IPAHEI---VFHED--------------------------VWAGG--GNFGPSIEYF--- 219

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                           R +E+ N V+MQ+EQ        L    ID G GLER A   Q 
Sbjct: 220 ---------------SRGLELGNQVYMQYEQTPDGGFKELRTKVIDMGAGLERWAWFSQG 264

Query: 240 KTNNYDIDLFKHLIQAS------------------------------------------- 256
              +YD   F   ++                                             
Sbjct: 265 CPMSYDA-TFPKTMEFIYNKTGYRADPVFHAKFAKYAGILNVEEIEDVGSAWNDVAKSME 323

Query: 257 EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
             +  +K     I    V+ DH RS    I DG LP+N G GY LR ++RR         
Sbjct: 324 MDLGELKDMVYKIRAQYVLADHTRSLLVAIHDGALPSNVGGGYNLRNLLRRCWSLIDQYQ 383

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
           + +  +  +  +   E GS Y EL     L  + +  E +R+ ++  +   ++  ++   
Sbjct: 384 W-DIDLNDIFRSHIDEFGSWYTELKDYGSLF-DIIDVERKRYEESRRKSKDIIKRMVK-- 439

Query: 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
              E L  D   +LYD+ G+  ++++          +    F   ++ +           
Sbjct: 440 -AKETLTADKLVELYDSQGISPELIK----EAKPDVVIPEDFYARVQARH---------- 484

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
            +  T KI  +  +    T+ + Y+  R  KF                     + V  ++
Sbjct: 485 DAKATRKIEVNETQGLPKTEPMYYEKPREFKF--------------------EANVVKLL 524

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
              ++V             D+T FY   GGQ GDTG   G  ++        K +G+ +H
Sbjct: 525 TPTKLV------------LDRTLFYPLGGGQAGDTGFVNGIKVK-----DVYKQDGVIIH 567

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
                     T   ++  +D   RR L+ +HSATH++++A   +LG HV Q G+  TP+ 
Sbjct: 568 VLESPMPPDTT--KVIGEVDEARRRILAAHHSATHIVNYAARKVLGDHVWQAGAEKTPEK 625

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYND 674
            R D+TH + +T  +L+ IE   ND+  + +PVV R M+R +A    +  +         
Sbjct: 626 ARLDITHYESLTFQQLQEIERVANDLAMKQIPVVVREMSRTEAEMEYSMRIYQGGAVPGK 685

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +R++ ++  D        CGG HV +T ++  + ++S   I+ G+ R+E  +   A S 
Sbjct: 686 ILRIIVIDGYD-----VEACGGIHVDNTSKVGFIKMLSSERIQDGVVRLEFKSLDNAVSE 740

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +   +  L+ ++    V   ++    +  + E+++L   + + + +L  + ++       
Sbjct: 741 IQHHESILREVSDLWGVGYDDIPKTAQRFFNEWKELGKKNKELQAELVQQTIAAALGKPG 800

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           + +  +++  D   L   + + +K+ +   ++  G +     S LI V E L + +
Sbjct: 801 DTVDVVVTGADFGTLMKAVGSFKKEFKGRTVIFRGDNFAYGYSDLINVKEKLAEGY 856


>gi|309807424|ref|ZP_07701387.1| alanine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|308169346|gb|EFO71401.1| alanine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
          Length = 236

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 107/241 (44%), Positives = 148/241 (61%), Gaps = 14/241 (5%)

Query: 22  LLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVG 81
           +L S+SLIP +DPTL++ NSG+   K  F G   P    +T+ QK +R     ND++NVG
Sbjct: 2   VLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSSQKSIRT----NDIENVG 57

Query: 82  RTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKL 139
           +T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   LD  +LY+TVY +D +A++L
Sbjct: 58  KTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDPDKLYVTVYPKDTDAYRL 117

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC-----IPGGLPGSSEEG 194
           W ++ GL    I+++   DNFW + E GPCGP SEIF+D+G+                E 
Sbjct: 118 WHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQENNDVAEDDPENFPGGEN 174

Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254
            RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +V+Q+   N++ DLF  +I+
Sbjct: 175 ARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVSVIQDAPTNFETDLFMPIIK 234

Query: 255 A 255
            
Sbjct: 235 Q 235


>gi|259015927|gb|ACV89247.1| alanyl-tRNA synthetase [Tipula abdominalis]
          Length = 268

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 107/269 (39%), Positives = 149/269 (55%), Gaps = 23/269 (8%)

Query: 48  NIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
            IF G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YF
Sbjct: 1   PIFLGTADPNSDMAKWVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 60

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRI 154
           K      AW+LLT    L   RLY+T +        + D E  ++W ++ G+  + I+  
Sbjct: 61  KREICTWAWELLTDRLKLPSERLYVTYFGGDAASGLEPDLECRQIWLEL-GIKPEHILPG 119

Query: 155 TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
           +  DNFW M ETGPCGPCSE+ FD+           +++    +EIWNLVF+QF ++   
Sbjct: 120 SMKDNFWEMGETGPCGPCSELHFDRIGGGRSVPELVNQDDPDVLEIWNLVFIQFNREPDS 179

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------ 268
              +LPK  ID GMG ER+ +V+Q+K +NYD DLF  +  A ++ TG             
Sbjct: 180 SLRLLPKKHIDCGMGFERLVSVIQDKRSNYDTDLFVPIFDAIQKGTGAPPYQGRVGAEDA 239

Query: 269 ---IVNHRVIVDHLRSSSFLIADGILPAN 294
               + +RV+ DH R+ +  ++DG  P N
Sbjct: 240 DGIDMAYRVLADHARTLTIALSDGGYPDN 268


>gi|255028973|ref|ZP_05300924.1| alanyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 520

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 181/550 (32%), Positives = 286/550 (52%), Gaps = 41/550 (7%)

Query: 357 RFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL+ GL +L+ +L  +    ++++ G   FKLYDT G P+++ ++     GL  +D
Sbjct: 1   RFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK-VD 59

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   ++EQR+RARA    + S   +     L      + F+GY+             
Sbjct: 60  HAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEHV-------- 109

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S +  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+ D G  
Sbjct: 110 ---------------SEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQVADKGTI 154

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHLLH
Sbjct: 155 ESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLLH 214

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV   M
Sbjct: 215 RALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEEM 274

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
              +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVSE+
Sbjct: 275 PIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVSET 329

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R+++  +
Sbjct: 330 GIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLREVKREN 389

Query: 775 AKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L  
Sbjct: 390 ESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVLGA 449

Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +   A
Sbjct: 450 VQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELGTA 507

Query: 889 IAGVASFLKK 898
           +  V++++K+
Sbjct: 508 LDYVSTWVKE 517


>gi|71902035|ref|ZP_00684078.1| Alanine--tRNA ligase [Xylella fastidiosa Ann-1]
 gi|71728198|gb|EAO30386.1| Alanine--tRNA ligase [Xylella fastidiosa Ann-1]
          Length = 528

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 176/558 (31%), Positives = 293/558 (52%), Gaps = 40/558 (7%)

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +  TL +E+ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI  
Sbjct: 2   VMRTLLAEEERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIAR 60

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG+  +D+  F  A+ +QR  ARA       G   ++          T F+GY+ L+  
Sbjct: 61  ERGMR-VDMAGFEAAMTQQRKTARAAGKF---GRGVQLSAERAAMLSPTVFLGYEQLQAD 116

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                    V A++  G + + A  G +V V+ D+TPFYAE+GG
Sbjct: 117 GL----------------------RVVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGG 154

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+GD G  +            +K  G F  H   + +G ++    L  ++    R+ +++
Sbjct: 155 QVGDIGTLMASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVAL 214

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL ++ G+HV+Q GS + PD LRFD +H +PI++ ++  IE  VND +  
Sbjct: 215 NHSATHLLHCALRSVFGNHVAQKGSLVAPDRLRFDFSHFEPISAVQMTLIERMVNDEVRA 274

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N  V+   M  + A+ +GA AL G KY + VRVV++        S  LCGGTH++ TG+I
Sbjct: 275 NHLVMIEQMGMQAALDAGAMALFGEKYGEHVRVVTMG------TSVELCGGTHITRTGDI 328

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  I+SE  + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  +VV  + ++ +
Sbjct: 329 GLFKIISECGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTD 388

Query: 766 EYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             + L+    K K +L    ++        +ADV  ++  +  +D K L+  +D L+ ++
Sbjct: 389 RQKTLERELEKLKGKLLSGTITDLLSMAVNVADVKVVAARLDGLDGKALREALDRLKLQL 448

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              +I+L G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG 
Sbjct: 449 SDAVIVLAGVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGE 507

Query: 881 NGNKADQAIAGVASFLKK 898
           +G     A+  VA+++K+
Sbjct: 508 DGPSLRSALDSVATWVKQ 525


>gi|259015929|gb|ACV89248.1| alanyl-tRNA synthetase [Musca domestica]
          Length = 266

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 112/268 (41%), Positives = 148/268 (55%), Gaps = 24/268 (8%)

Query: 48  NIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
            IF G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YF
Sbjct: 1   PIFLGXADPNSDMSKWLRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 60

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRI 154
           K+     AW+ LT+   LD+ RLY+T +  DE        E  ++W  + GL A+ II  
Sbjct: 61  KKEICAWAWEFLTERLGLDKDRLYVTYFGGDETSGLEPDLECKQIWMNL-GLKAEHIIPG 119

Query: 155 TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
              DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++   
Sbjct: 120 NMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREQDG 178

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYE 265
               LPK  ID GMG ER+ +V+Q K +NYD D+F  L  A    TG          +  
Sbjct: 179 SLKPLPKKHIDCGMGFERLVSVIQNKRSNYDTDIFVPLFDAIHVGTGCAPYGGKVGAEDV 238

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPA 293
               + +RV+ DH R+ +  +ADG +P 
Sbjct: 239 TGVDMAYRVLADHARTLTXALADGGVPD 266


>gi|218884411|ref|YP_002428793.1| alanyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218766027|gb|ACL11426.1| alanyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 908

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 173/906 (19%), Positives = 335/906 (36%), Gaps = 159/906 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
           ++  +R  F+ F +  GH ++    ++      L  T + +V F+  +  G   P Y  +
Sbjct: 59  SLQEVREKFIGFLKSKGHGVVDPYPVLARWRNDLYLTIASIVVFQPAVTDGIVDPPYNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             +Q  +R      D+DNVG T  RH T FEM G  +F       Y+ E  +    +   
Sbjct: 119 VIIQPSIRLS----DIDNVGLTFGRHLTSFEMGGMHAFNKPGKFVYWVEGILDNTIEFFN 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  +D   L   V+                           + +W     G  GP  E+
Sbjct: 175 KEIGIDLDDL---VF--------------------------KEGWWEGG--GNAGPAPEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
             D                   +E+  LV M + +    +    P + +D G G+ER+A 
Sbjct: 204 LVD------------------GMELATLVHMMY-KVVDGKYVENPVLVVDCGYGIERIAW 244

Query: 236 VLQEKTNNYDI--------------------DLFKHLIQASE---------------QVT 260
             Q+    +                      D+ K  +                   ++ 
Sbjct: 245 FTQKTPTGFHAIYGRLVNEYKDVLGVEEPSYDVLKKAVYLLSDKEIGGIHEYERLLRELG 304

Query: 261 GMKYEGNNIVNHRV--IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
              Y    +    +   +DH R+ S +++DG++P+N G GY+ R ++RR +     LG  
Sbjct: 305 FGDYVDEFVKTIYLYSALDHARTISLMLSDGVVPSNTGEGYLARLVIRRLLRNLARLGVE 364

Query: 319 EPLMMHLLPALCTEMGSAYPE------LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
              +  ++  L       +          + +  I + +  E  +F   + RG+ ++D +
Sbjct: 365 PSRLTDVVQELLDRQVKYWKNDYIYGKFEKHRDYILDVVTMETSKFIDAVSRGIDIVDKL 424

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           L    +  +   +    +YD+HG+P + + +     G+       F   + ++ S +   
Sbjct: 425 LKKKRELLL---EDLITIYDSHGIPPEFVAERAREHGVKVEIPGDFYSRIAQRHS-SPGV 480

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
            +        +        + AT  + ++    +    +   V  +              
Sbjct: 481 LVKEKEHEFPEDVVKWASGFPATYRVFHENPYLTSVNAKVLGVRGK-------------- 526

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                               ++ D+T  Y  AGGQ  DTG    +G   ++  V K  + 
Sbjct: 527 -------------------YLILDRTVMYPWAGGQDHDTGFIEVNGRGYEVEYVGKVGDV 567

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I           +     + + ID+  R +L  +H+ATH++  A   ILG HV Q G+  
Sbjct: 568 IIHVLKEPV--EINENTMVRVVIDWYRRYRLMKHHTATHIILAAARYILGDHVWQAGAEK 625

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--T 670
           T +  R D+TH K +TS +++ IE+  N II   + +      + +A       +     
Sbjct: 626 TIEKARLDITHHKSLTSEDVRKIEELANRIIEDRVDLRFHYTGKFEAENKYGLKIYQGGA 685

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
            Y+  +R+V +   D        C GTHV +T E+  + I++   I+ G+ R+E I   R
Sbjct: 686 IYSPILRIVEIPGWDA-----QACFGTHVFNTSEVGGVKIINAERIQDGVIRLEFIASTR 740

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-RKLQLIHAKRKL--QLNVEDLS 787
               +   + ++    S L   QG++   V++I  EY + L+++   R L  +  +    
Sbjct: 741 LVDKIHLLENEIGEALSILGSKQGDLASAVKKIKREYDKTLEVLDKYRDLMGKTIISKAL 800

Query: 788 CHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
             +I    ++ +   +   D K +K V++ L  K      +L  I   +   + +   + 
Sbjct: 801 TEEINICGIDTVYVELPISDEKLVKQVLEELSLKHG----VLTTIDTGELIEIAVKPEKA 856

Query: 846 LLDRFN 851
           +    +
Sbjct: 857 VKKNID 862


>gi|307069566|ref|YP_003878043.1| putative alanyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
 gi|306482826|gb|ADM89697.1| putative alanyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
          Length = 426

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 158/437 (36%), Positives = 247/437 (56%), Gaps = 28/437 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  FL F++K  H ++P  +L   N+  LMF NSGM+ FK  F G+ K  Y+ +
Sbjct: 1   MKLKVVRNKFLNFYKKKKHIIMPHINL-KLNENKLMFVNSGMIQFKKFFLGR-KSKYKRI 58

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ C R  GKHND + +G TN HHT FEMLGN+SF  YFK  A+   W+LL  +F ++
Sbjct: 59  CNVQPCFRVSGKHNDFEKIGYTNIHHTLFEMLGNWSFRNYFKYDALFWTWELLINKFKIN 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT-------NDNFWSM-AETGPCGPCS 173
           +++++IT+++ D E + +W+K  G+S  +II+          N+NFW +    GPCG CS
Sbjct: 119 EKKIWITIHENDFETYNIWRK-IGISNKRIIKKKNIKKKFFLNENFWEISNNNGPCGTCS 177

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK---MSIDTGMGL 230
           EIF+D G+             +RY+EI N VF+Q++++    ++IL K     ID G+GL
Sbjct: 178 EIFYDMGKKYKLK-------NQRYVEICNNVFLQYKKKLYNNKYILNKLKYNYIDVGIGL 230

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+ ++LQ   +NY IDLFK +I        +K    NI + ++I DH+RS+ FLI++ I
Sbjct: 231 ERLTSILQNVNSNYKIDLFKKIINKISDKIKIK----NINSLKIISDHIRSACFLISEKI 286

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N   GY+LR+I+RRA+          P    +   L  EM   YP L + K  I+  
Sbjct: 287 YPSNNKHGYILRKIIRRAIREGYKSNIKNPFFYKISSILIKEMEDFYPFLKKNKNNIKNV 346

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+E+F      G+ +L+  L      + L+G  AFKLYDT+G P+++++DI     +
Sbjct: 347 IKKEEEKFFNIYKIGIRILNNELKK--CSKKLDGKFAFKLYDTYGFPIELLEDICLKNKI 404

Query: 411 AGIDIISFNQALEEQRS 427
                  F   + +Q++
Sbjct: 405 LIKKKE-FFYEMNKQKN 420


>gi|257076158|ref|ZP_05570519.1| alanyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 891

 Score =  337 bits (863), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 170/886 (19%), Positives = 322/886 (36%), Gaps = 176/886 (19%)

Query: 3   NVSSIRTTFLEFFQKNG--HELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQ 59
           ++  +R  FL FF+++   H ++    ++P     ++  N+ +  F+  + +G   P   
Sbjct: 59  SLDEMRQEFLSFFKEDKLPHTIIEKYPVVPRWRDDVLLVNASIYDFQPQVTSGLVPPPGN 118

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      DLD VG+T RH T FEML + +F       Y+K   I+ ++  L
Sbjct: 119 PLAMSQPSIRML----DLDLVGKTGRHLTSFEMLCHDAFNYENKYIYWKNETIEYSYRFL 174

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T++  +D                                IT  +  W     G  G   E
Sbjct: 175 TEKLHVDG-----------------------------AEITYKEKPWFGG--GNAGNAVE 203

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTG 227
           +F                   R +E+  LVFM  ++    E         ++P   +DTG
Sbjct: 204 VFV------------------RGLEVATLVFMDMKEDPDGEIDIEGTKYSMMPLKIVDTG 245

Query: 228 MGLERMATVLQEKTNNYD----------------IDLFKHLIQASEQVTGMKYEGNNI-- 269
            GLER+  +       Y+                 D+   ++Q   +++      +    
Sbjct: 246 YGLERLVWLSTGTPTVYESILGETIEYIRKNSSAGDIDPEIMQKLSELSAEIDPYSESKL 305

Query: 270 --------------------------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
                                      +   + DH ++   + AD ++P+N   GY+ R 
Sbjct: 306 LKQVAPWLKKKHISIDNEFLRRLKSFRSLYSLADHTKTLLLMFADYVIPSNVKVGYLART 365

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RR++ +   + +++   M L+               +    I+  +  E E++ +   
Sbjct: 366 LVRRSLKFMDDISFSKDF-MDLMDFQHEIFSRIVSNYDR--DFIKNIIDIEKEKYAEI-- 420

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM-QDILCARGLAGIDIISFNQAL 422
                 +G +        L    A  LYD+ G+  D++ +      G       +F + +
Sbjct: 421 --NKSAEGKVRKYIHSGKLELKNAITLYDSEGMNEDLISESFKKITGKDLELPDNFQEIV 478

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
             +                        +    ++F G                       
Sbjct: 479 ISRHETRHTKKKEAPQFPPVHTRPLYYDNTKISEFTG----------------------- 515

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                       +    +            ++ +QT FY E GGQ  D G  I +G ++ 
Sbjct: 516 ----------IVLYSGEK-----------CIIPNQTAFYPEGGGQPCDLGYFIANGKKVN 554

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + DVQK  + I           +     +   IDY  R+QL I+HSATHLL   +    G
Sbjct: 555 VVDVQKYNDSIVHFL----DNNIPANSRVKGYIDYTRRKQLMIHHSATHLLLGIMRKYFG 610

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q+G     +  R D+TH + IT  +++ IED   + I Q+  +    ++   AI  
Sbjct: 611 EHVWQSGVKKDINESRIDITHYRKITLEDIRHIEDMCMEAIEQDRKITVSNVSWNPAIEK 670

Query: 663 GAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
               L       + ++R+V+++  D     S  CGGTH+ ST  I  + I+   +++ GI
Sbjct: 671 YGFRLFEGGVPVSSKIRIVTIDGID-----SEGCGGTHLDSTAPIGFIKIMKVETLQEGI 725

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           +RI    G  A  ++    + ++    +LKV   +V  +  EI+ E  + + +  K + +
Sbjct: 726 QRITYSAGPAAMRYVQLLHDTVQMEQEYLKVDTEDVYRQSLEIFHENLENRKLIDKYRKE 785

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                L+  +    N   +  + +D  E   ++  + +K    II+
Sbjct: 786 KIEGILNAGEPVHENIYVY-ATNLDRDEFNLLIQGIFRKNIKAIII 830


>gi|284799808|ref|ZP_06390350.1| alanine--tRNA ligase [Neisseria subflava NJ9703]
 gi|284796867|gb|EFC52214.1| alanine--tRNA ligase [Neisseria subflava NJ9703]
          Length = 624

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 164/527 (31%), Positives = 249/527 (47%), Gaps = 45/527 (8%)

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
                ++ G+  FKLYDT+G P D+  D+    G   +D   F + +        A    
Sbjct: 132 ANSKLVIGGEHIFKLYDTYGFPYDLTADMARELG-IDLDEAGFEREM-------EAQRAR 183

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
             +  + K    L  +   T+F GY                             S V A+
Sbjct: 184 ARAAQSFKANAQLPYEGQDTEFKGYSE-----------------------RQTESKVLAL 220

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
            + GE V E   G +  VV D TPFYAE+GGQ+GD G       R ++ D QK    +F 
Sbjct: 221 YKDGEQVNELNEGDEGAVVIDFTPFYAESGGQVGDVGYIFAGENRFEVRDTQKIKAAVFG 280

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
              +   G L+   S+   +D + R     NHSATHL+H AL  +LG HV Q GS +T +
Sbjct: 281 QFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLMHKALRDVLGEHVEQKGSLVTAE 340

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             RFD++H + +T+ E+  +E  VN+ I  N+ V   IM+ EDA  +GA  L G KY D 
Sbjct: 341 STRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAIMSMEDAQKTGAMMLFGEKYGDE 400

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRV+ +        S+ LCGGTHVS TG+I L  I+SE  I AG+RRIEAITG  A    
Sbjct: 401 VRVLQMGG-----FSTELCGGTHVSRTGDIGLFKIISEGGIAAGVRRIEAITGLNALKWA 455

Query: 736 MGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCH 789
             Q+  +K + +  K     +V+ +++      + L+   A+ K +L V           
Sbjct: 456 QEQEHLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEKELARAKAELAVHAGAKLLDDAK 515

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
            +     ++  I    +  L+ ++  L  K +  I++L  +  + K S+   V++ L  +
Sbjct: 516 DLGSAKLVAAQIEAD-AAALREIVTDLTGKSEQAIVLLAAV-NDGKVSLCAGVSKPLTGK 573

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A DL + +A+ + GG GGGRP +AQ+GG +  K    I  V  ++
Sbjct: 574 VKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDAEKLPAMIESVKDWV 619


>gi|259015945|gb|ACV89255.1| alanyl-tRNA synthetase [Blattella germanica]
          Length = 252

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 102/254 (40%), Positives = 142/254 (55%), Gaps = 24/254 (9%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRTVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+ F L   RLY+T +        + DEE  ++W  + G+    ++  + 
Sbjct: 61  EICAWAWELLTEVFKLPADRLYVTYFGGDKAAKLEPDEECRQIWINL-GVPPAHVLPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           +++    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRDAAHLVNQDDPDVLEIWNLVFIQFNRETDGSL 178

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGN 267
             LPK  ID G+GLER+ +V+Q+K  NYD DLF  L  + ++           G +    
Sbjct: 179 KPLPKKHIDCGLGLERLVSVIQQKRANYDTDLFMPLFDSIQKGTGAPSYKGRVGEEDVDG 238

Query: 268 NIVNHRVIVDHLRS 281
             + +RV+ DH R+
Sbjct: 239 MDMAYRVLADHART 252


>gi|331694168|ref|YP_004330407.1| Alanine--tRNA ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326948857|gb|AEA22554.1| Alanine--tRNA ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 463

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 143/472 (30%), Positives = 233/472 (49%), Gaps = 51/472 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +  +IR  +L+  ++  H ++  + L+  +DPT +FT SGM P      G E P    +
Sbjct: 1   MDARAIRQAYLDLLREQRHAVIERAPLVLRDDPTTLFTGSGMQPLLPYLLGAEHPDGARL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ C+RA     D+D VG  NRH TFFEMLGN+S G Y K   I + W  L     LD
Sbjct: 61  ADVQPCLRA----QDMDEVG-DNRHTTFFEMLGNWSLGDYSKAEQIPMVWYFLVDVVGLD 115

Query: 122 QRRLYITVY--------DEDEEAFKLWK---KISGLSADKI-----------------IR 153
             R+Y+T +          D+E+  +W+   +  G+S D+I                 I 
Sbjct: 116 PERIYVTAFIGDSAHGIPRDDESADIWERLFRERGISFDRIDLDTEEYGNEVGNQGARIA 175

Query: 154 ITTNDNFW-------SMAETGPCGPCSEIFFDQ----GECIPGGLPGSSEEGERYIEIWN 202
              + N+W        M    P GP SEIF+       +   G  P  + +G +++EI N
Sbjct: 176 FYGHKNWWSRFGGPDEMPVEDPGGPDSEIFYYFPQVEHDTAYGRYPHQNSDGGQFLEIGN 235

Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262
            V M + +        LPK ++D G GLER+A    +  + Y + L   +++  ++VTG 
Sbjct: 236 SVSMTYRRTETG-VVDLPKHNVDFGGGLERIAAAAIDSPDVYHVSLLWPMVEQLQKVTGK 294

Query: 263 KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
            Y        RV+VDHLR + FL ADG+ P+N  +GYV+RR++RRAM +   LG T  + 
Sbjct: 295 SYAEAT-TAMRVVVDHLRGAVFLAADGVRPSNSKQGYVMRRLLRRAMRFGLDLGLTAGVA 353

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
             L+P + +     YPE+   +  I   +  E++ F +TL +GL ++  +         +
Sbjct: 354 AELVPVVASVYSDVYPEIAAGEADIVAVIAKEEKLFARTLRKGLSMVRRL---GRTQPAI 410

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAH 432
           +G   F+L+DT G+P+++  +    +G+A  +     F+  ++ Q++R+RA 
Sbjct: 411 SGAHLFELHDTFGMPIELSVEEAHRQGIALEETWQADFDALMDAQKARSRAA 462


>gi|227872332|ref|ZP_03990686.1| possible alanine--tRNA ligase [Oribacterium sinus F0268]
 gi|227841815|gb|EEJ52091.1| possible alanine--tRNA ligase [Oribacterium sinus F0268]
          Length = 536

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 188/559 (33%), Positives = 294/559 (52%), Gaps = 32/559 (5%)

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403
           +I   +  E++RF KT+D GL +L G+   L K+  ++L+G+ AF+LYDT+G PLD+ ++
Sbjct: 1   MILRVISEEEDRFNKTIDNGLAILQGLKEDLQKNGEKLLSGEDAFRLYDTYGFPLDLTKE 60

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +D  +F QA++ QR  ARA          + ++ +L E    T+F+GY+ L
Sbjct: 61  ILEDSGIT-VDEEAFQQAMKVQRETARAARKSTNYMGRDDVYQNL-EASLQTEFVGYEQL 118

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +     +                      + EI     +G +  V+ D++PFY  
Sbjct: 119 ECEGKITALVYLADNG-----------------DEDEIRPSVEAGNRAAVITDRSPFYGT 161

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ GD G          + +      G   H   VE+G      S+ L +D + R   
Sbjct: 162 MGGQQGDQGKICSGTSVFIVEETIHLQGGKLAHLGTVEQGGFSVGDSVRLVVDAKKRALT 221

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLL  AL   LGSHV Q G+      LRFD TH   +T  EL+ +E+ VN+ I
Sbjct: 222 ARNHTATHLLQKALKETLGSHVEQAGAYYDDKRLRFDFTHFTALTKEELEKVENLVNEEI 281

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           A+   V+TR M  E+A  SGA AL G KY D VRVVSV     G  S  LCGGTHV ++ 
Sbjct: 282 ARADVVLTREMPIEEAKKSGATALFGEKYGDTVRVVSV-----GDFSIELCGGTHVENSS 336

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I    I+SE  + AG+RRIEAIT Q    +   ++E LKSL+  LK    +++ RVE +
Sbjct: 337 SIQAFKILSEQGVAAGVRRIEAITSQNLFDYFHHEEELLKSLSGKLKADPEHLLARVESL 396

Query: 764 WEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            +E ++ +    + K +L    VEDL+  +  D + ++  I  +D   L+++ D+L+ K 
Sbjct: 397 EKELKESRSQCEQLKAKLANAEVEDLAVVEYKDCSLIATNIPGMDRNALRNLGDSLKDKH 456

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           ++  I+L  + ++ K  ++   ++  +    +A +L +  A +LGGGG GG+P MAQ+GG
Sbjct: 457 KNAFILLASV-EDGKPILMATASDGAVKLGAHAGNLIKEIAPILGGGG-GGKPQMAQAGG 514

Query: 880 PNGNKADQAIAGVASFLKK 898
            +  K ++A+      +KK
Sbjct: 515 KDSAKLEEALKQSLESMKK 533


>gi|226490136|emb|CAX69310.1| Alanyl-tRNA synthetase [Schistosoma japonicum]
          Length = 297

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 91/190 (47%), Positives = 115/190 (60%), Gaps = 14/190 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R  F +FF   GH  + SSS IP NDP+L+F N+GM  +K IF G   P      
Sbjct: 6   TARELRQQFFDFFNSRGHVYVHSSSTIPHNDPSLLFANAGMNQYKPIFQGTADPNSELGQ 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VGR   HHTFFEMLGN+SFG YFK+ A  LAW+LLT  
Sbjct: 66  LKRAYNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGNWSFGDYFKKEACGLAWELLTDV 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T +          DEEA  +W    GL  D ++     +NFW M ETGPC
Sbjct: 126 WKIPRERLYVTYFGGDSSCGLPADEEARDVWIS-IGLPKDHVLPFGMKENFWEMGETGPC 184

Query: 170 GPCSEIFFDQ 179
           GPCSEI +D+
Sbjct: 185 GPCSEIHYDR 194


>gi|282165634|ref|YP_003358019.1| alanyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282157948|dbj|BAI63036.1| alanyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 863

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 183/863 (21%), Positives = 317/863 (36%), Gaps = 169/863 (19%)

Query: 15  FQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF-TGQEKPVYQAVTTVQKCVRAGGK 73
           F++ G+  L     +      L F  +G+  F+    +G+ +P   AV   Q C+R    
Sbjct: 78  FEQWGYVPLERYPTVARWYEDLYFVAAGINDFQPYVVSGELEPPAPAVLEPQFCLR---- 133

Query: 74  HNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYIT 128
            ND+DNVG T RH+T F M+G  +F       YFKE  I    + LTK   +    +   
Sbjct: 134 FNDIDNVGITGRHYTGFIMVGQHTFNTPEKHVYFKEEGIAQIQEFLTKGLGIPAHEIL-- 191

Query: 129 VYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP 188
            + ED                           W+    G  GP  E F            
Sbjct: 192 -FHED--------------------------VWAGG--GNFGPSIEYF------------ 210

Query: 189 GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI-- 246
                  R +E+ N V+MQ+EQ        L    ID G GLER A   Q    +YD   
Sbjct: 211 ------SRGLELGNQVYMQYEQLPDG-FRELKTKVIDMGAGLERWAWFSQGLPMSYDATF 263

Query: 247 ------------------------------------DLFKHLIQASEQVTGM----KYEG 266
                                               D        + Q+       K   
Sbjct: 264 PKTMDFLYTKTGYRPDPEFQARFAKYAGILNVDELEDAHSAWNDIAGQMGMSLDELKGAV 323

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
                   I DH RS    I DG LP+N G GY LR ++RR    A   G  +  +  + 
Sbjct: 324 YKNRALYAIADHTRSLLVAIHDGALPSNVGGGYNLRNLLRRCWTLADQYGL-DVDLNDVF 382

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
                E GS Y EL     L  + +  E +R+ ++  +   ++  ++      E    + 
Sbjct: 383 RCHIDEFGSWYTELKDYGSLF-DIIDVEKKRYDESKQKSQNIIKRMVKS---KEAFTPEK 438

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
             +LYD+ G+  ++++               F   ++ +  R              K+  
Sbjct: 439 LVELYDSQGVAPEMIK----ESKPDLEIPEDFYVRVQARHERREER----------KVEA 484

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
           S       T  + Y+     +F  +  K++                              
Sbjct: 485 SETAGLPKTVPMYYEKPHEFRFEADVVKLITP---------------------------- 516

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               V+VV D+T FY   GGQ GDTG   G  ++          +   V H +       
Sbjct: 517 ----VKVVLDRTLFYPLGGGQAGDTGFMNGIKVK------DVYKQDGVVVHVLESPLPAD 566

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +V  +D   RR LS +H++TH++++A   +LG HV Q G+  TP+  R D+TH + 
Sbjct: 567 A-KRVVGEVDKDRRRILSAHHTSTHIVNYAARKVLGDHVWQAGAEKTPEKARLDITHYES 625

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYE 684
           +T A+L+ IE   N ++ +N+PV    ++R +A    +  +          +R++ +   
Sbjct: 626 LTFAQLQEIERVANGLVMENVPVHVEELSRTEAERRYSMRIYQGGAVPGKVLRIIRIPGY 685

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        CGG HV +T ++  + ++S   I+ G+ R+E  +   + + +   D  LK 
Sbjct: 686 D-----VEACGGIHVDNTAKVGFIKMLSSERIQDGVVRLEFKSLDNSLNEVQYHDRLLKE 740

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           ++    V   ++       + E+++L   +   + ++    +     +D   +   +   
Sbjct: 741 VSDLWGVGYDDIPKTAARFFNEWKELSKQNKDLQSRMVRALIEGSLNSDT--IDLSLPSG 798

Query: 805 DSKELKSVMDALQKKIQSGIIML 827
           D   +   ++AL+ + +   + L
Sbjct: 799 DFGTVMKAVEALKPRFKGKTVFL 821


>gi|157813836|gb|ABV81663.1| putative AATS-ALA protein [Triops longicaudatus]
          Length = 314

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 121/316 (38%), Positives = 179/316 (56%), Gaps = 20/316 (6%)

Query: 93  LGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKIS 144
           LGN+SFG YFK+     AW+LLT+ F L + RLY+T +          DEE  ++W  + 
Sbjct: 1   LGNWSFGDYFKKEVCTWAWELLTEVFKLPKDRLYVTYFGGHPETGLQSDEECRQIWLSL- 59

Query: 145 GLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLV 204
           GL +++I+  +  DNFW M ETGPCGPCSEI FD+           + +    +EIWNLV
Sbjct: 60  GLPSERILPGSMKDNFWEMGETGPCGPCSEIHFDRI-GGRDAAHLVNMDDPDVLEIWNLV 118

Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
           FM F ++       LPK  ID GMG ER+ +V+Q+K +NYD DLF  +  A ++ TG K 
Sbjct: 119 FMTFNRETDSSLKPLPKRHIDCGMGFERLVSVIQDKRSNYDTDLFAPIFAAIQKGTGAKP 178

Query: 265 EGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RL 314
                         + +RV+ DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   
Sbjct: 179 YSGKVGKEDADGVDMAYRVLADHARTLTIALSDGGRPDNVGRGYVLRRILRRGVRYATEK 238

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           +         L+P +   +G  +PE+ +   L+ + +  E+ +F KTL+RG  LL+  ++
Sbjct: 239 MQAKPGFFASLVPTVVEVLGDTFPEVTRDPELVMDIINDEEAQFLKTLNRGRSLLERTIA 298

Query: 375 HLGKDEILNGDVAFKL 390
            LG  + L GD+A++L
Sbjct: 299 KLGNQKTLPGDIAWRL 314


>gi|330902429|gb|EGH33472.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 175

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 97/175 (55%), Positives = 120/175 (68%), Gaps = 9/175 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETG 167
           L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TG
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTG 175


>gi|312601159|gb|ADQ90414.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 168]
          Length = 743

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 207/776 (26%), Positives = 350/776 (45%), Gaps = 82/776 (10%)

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG---GLPGSSEEGERYIEI 200
            G S +K+I+ +   NFW + + GPCGPCSEI+FD+G         L  +  E +R+IEI
Sbjct: 1   MGFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPKFDSRGSELIKNEIENDRFIEI 59

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           WN+VF +F    +Q    L   +IDTG G ER+ ++LQ+   NYD DLF  +I   E+ T
Sbjct: 60  WNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQDGPTNYDTDLFLPIIAEIEKST 119

Query: 261 GMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
             +Y+  N             + R+I DH+R+ +  I DG+ P+N  RGY++RR++RRA 
Sbjct: 120 VFQYKIENYFLKEPRQTQINKSFRIIADHIRAITLAINDGVQPSNLHRGYIIRRLIRRAY 179

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
              + LG + P +  L+  +   +     +       I + + +E+E F KTL+ G  LL
Sbjct: 180 WNGKKLGISHPFLYKLVEIVGKTL-----DYRFDIPAISKIILNEEENFAKTLEIGYNLL 234

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
           +  L        +     FKL++T+G P+++ ++IL  + +        +Q +E Q   +
Sbjct: 235 ESQLK--INKNQIKPVTVFKLFETYGFPVELTKEILAEKNIDF----DLSQLVEFQEKHS 288

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           +       +G  + I    + K   + FIGY                        T+ + 
Sbjct: 289 QISRAKKTTGMQKVINSLTQIKAKISDFIGY-----------------------HTHHIE 325

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           + +  +  + E V E        V+F++TPFYA AGGQ  D G  + +   ++I DV K 
Sbjct: 326 TKISFLANKDEEVAETSGENLSYVIFEKTPFYATAGGQKHDQGWIVQNNSTIEILDVFKD 385

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
               F+++  V +G +     + L +D +NR  L  NHS THLL  +L    GS + Q G
Sbjct: 386 K---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHSGTHLLFASLRQEFGSEIKQLG 442

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           S    D L FD   ++  +  E+KS+E+ +N  I Q +     + N E+     A   L 
Sbjct: 443 SDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKRKYLVTNLEETQKLNAIMTLE 502

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG- 728
                    + +   D    ++ LCGGTH+ +T  +    I+S  S  +GI RI A+T  
Sbjct: 503 ESEYMDPNSLRLVIFD--KITTDLCGGTHIENTELLEKFTILSCQSKGSGIYRIRAVTSW 560

Query: 729 QRARSHLMGQ-DEKLKSLASFLKVSQG--------NVVGRV--EEIWEEYRKLQ------ 771
            +    L G+  E L  +++ LK            N+   V  E+ ++  +K++      
Sbjct: 561 NKYFEFLKGKIQEILSKISA-LKNKIKKIEPNFGLNLPNLVDLEQQFDYLKKIEDDLRIY 619

Query: 772 -LIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVG 829
                K +L++   +L  +KI ++   S  +   +    LK +    +++      +L  
Sbjct: 620 YKKLLKSQLRIAKSELDANKIIEIGKFSFYLDFNLPLHNLKQIAATWREQNPRISFILGA 679

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG-PNGNK 884
                +   LI+V+  +L       +     ++   G GGG   +AQ        K
Sbjct: 680 NLVNNE--FLIIVSSAILAS---NQILEKIFEIFT-GSGGGNYKIAQGKIQKKPEK 729


>gi|284030737|ref|YP_003380668.1| Alanine--tRNA ligase [Kribbella flavida DSM 17836]
 gi|283810030|gb|ADB31869.1| Alanine--tRNA ligase [Kribbella flavida DSM 17836]
          Length = 387

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 137/404 (33%), Positives = 217/404 (53%), Gaps = 30/404 (7%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
            TF++FF ++GH     SSLIP     ++FT SGM P      G+  P+ + +  VQ+C+
Sbjct: 5   KTFVDFFTRHGHVPTTGSSLIPRPGDPVLFTTSGMHPLTPYLEGEPHPLGRRLVGVQRCL 64

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYIT 128
           R      DLD VG    H T FEMLG++S G Y  E+ ++  + LLT+ F +D  +LY+T
Sbjct: 65  RT----TDLDEVG-DPTHLTVFEMLGSWSLGDYGSEQTLRWGYQLLTERFGIDPGQLYVT 119

Query: 129 VYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           V+        D+E+ + W+ + GL     I +TT+DN+WS   TGPCGP SEIF   G  
Sbjct: 120 VFGGDGQVELDQESLRTWQSL-GLP----IELTTDDNWWSNGPTGPCGPDSEIFVWTG-- 172

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G   G+    +R++E+WN V M++ + +      L + +IDTG+GLER+  VL+ K +
Sbjct: 173 -GGSPEGTPTTDKRWVEVWNHVMMRYRRLDDGSLEPLRQRNIDTGLGLERLTMVLEGKQS 231

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            Y+  LF+  +    ++        +  + R+++DHLRSS  ++ DG+ P+N GRGYVLR
Sbjct: 232 VYETSLFEPWMTTVPRL-----WTLDEQSERIVIDHLRSSIVIVGDGVHPSNTGRGYVLR 286

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RRA+        +  L    +      +   +    +   L+   L  E+ RF   L
Sbjct: 287 RLIRRALTILWREDESRSLSELPIELFQQTL--DHFHQGELVTLVRRILIDEEIRFTNLL 344

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +RG      VLSH    + L+ +    L++THGLP +++  +L 
Sbjct: 345 ERGR----KVLSHDRFRKTLDQNDFDYLHETHGLPQELVVSLLE 384


>gi|242556274|pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase Lacking The C-Terminal Dimerization Domain In
           Complex With Ala-Sa
          Length = 739

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 178/791 (22%), Positives = 289/791 (36%), Gaps = 177/791 (22%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           +   R  +L FF++ GH  +    ++      +  T + +  F+   T G   P    +T
Sbjct: 62  LDEXREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLT 121

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKE 117
             Q C+R     +DLD+VGRT RH T FE   + +F       Y+K   +    +LL   
Sbjct: 122 ISQPCIRL----DDLDSVGRTGRHLTLFEXXAHHAFNYPGKEIYWKNETVAYCTELL--- 174

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
                                      G+  + I+     +  W+    G  GPC E   
Sbjct: 175 ------------------------NELGVKKEDIV---YKEEPWAGG--GNAGPCLE--- 202

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL-------PKMSIDTGMGL 230
                I GG           +E+  LVF   E+  + +  I            +DTG GL
Sbjct: 203 ----AIVGG-----------LEVATLVFXNLEEHPEGDIEIKGARYRKXDNYIVDTGYGL 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVI--------------- 275
           ER     +     YD  +F  ++      + + +   +    R++               
Sbjct: 248 ERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIXGELRG 306

Query: 276 ----------------------------------VDHLRSSSFLIADGILPANEGRGYVL 301
                                              DH R   F + DG++P+N G GY+ 
Sbjct: 307 ERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFXLGDGLVPSNAGAGYLA 366

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R  +RR++  A  L      +  L+      +G    E       ++E L  E ER+  T
Sbjct: 367 RLXIRRSLRLAEELEL-GLDLYDLVEXHKKILG---FEFDVPLSTVQEILELEKERYRTT 422

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           + +G  L++ ++      + L  D   +LYD+HG+P+++   I   +G            
Sbjct: 423 VSKGTRLVERLVER---KKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEXPKDIYAE 479

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           L ++ S+A                 +L+ +Y AT+ + YD     +F             
Sbjct: 480 LAKRHSKAEKVQEKK---------ITLQNEYPATEKLYYDDPTLLEF------------- 517

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   + V  +            G    V+ +++ FY E+GGQ  D G  I +G + 
Sbjct: 518 -------EAEVIGV-----------EGD--FVILNRSAFYPESGGQDNDVGYLIANGGKF 557

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++ DV        V H +           +   ID   R +   +HSATH+L ++L  +L
Sbjct: 558 EVVDV--LEADGVVLHVVKGAKP-EVGTKVKGVIDSDVRWRHXRHHSATHVLLYSLQKVL 614

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G+HV Q G+       R DVTH +  +  E+K IE   N  I  N P+     +R +A  
Sbjct: 615 GNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEXLANREILANKPIKWEWXDRIEAER 674

Query: 662 SGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                L         ++RVV V            CGGTH  STGEI  L I+   SI+ G
Sbjct: 675 KFGFRLYQGGVPPGRKIRVVQVGD------DVQACGGTHCRSTGEIGXLKILKVESIQDG 728

Query: 720 IRRIEAITGQR 730
           + R E   G+ 
Sbjct: 729 VIRFEFAAGEA 739


>gi|148645078|gb|ABR01063.1| AlaS [uncultured Geobacter sp.]
          Length = 171

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 96/171 (56%), Positives = 118/171 (69%), Gaps = 2/171 (1%)

Query: 42  GMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           GM  FK+ F G EK  Y    + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG Y
Sbjct: 1   GMNQFKDCFLGLEKRDYLRAASSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW 161
           FK+ AI  AW+ LT E  L + +LY+TVY +D+EA  +W +  G+  ++I R    DNFW
Sbjct: 61  FKKEAIAFAWEFLTVELGLSRDKLYVTVYTDDDEAAAIWHEQEGVPLERIYRFGEKDNFW 120

Query: 162 SMAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQ 210
           SM +TGPCGPC+EIF+D G     G P      + +RY+EIWN VFMQF +
Sbjct: 121 SMGDTGPCGPCTEIFWDNGPGTGCGSPDCAVGCDCDRYMEIWNNVFMQFNR 171


>gi|295839856|ref|ZP_06826789.1| alanine-tRNA ligase [Streptomyces sp. SPB74]
 gi|295827681|gb|EDY45628.2| alanine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 399

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 130/415 (31%), Positives = 207/415 (49%), Gaps = 31/415 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           N   I   F  F+++ GH  +  S+L+P   D +++FT SGM P      G+  P+ + +
Sbjct: 6   NTEEISRRFTGFYEERGHARITGSTLLPPPGDDSVLFTTSGMHPLTPYLEGRPHPLGRRL 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DL+ VG    H T FEMLG +S G Y   R+++  ++LLT    +D
Sbjct: 66  VNVQRCLRT----TDLEEVG-DPTHLTVFEMLGTWSLGDYEGPRSLEWGYELLTDGLGID 120

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              L+ TV+  D+       + ++W+++ G+  ++ +     DN+WS   TGPCGP SEI
Sbjct: 121 PGLLHTTVFGGDDRVGPDLASLEVWERL-GVPVERSV----EDNWWSNGPTGPCGPDSEI 175

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G+   G    +    ER++E+WN V M+  +        LP+ ++DTG+GLER+A+
Sbjct: 176 FLWTGD---GPPESTPTGDERWVEVWNHVMMRHRRLPDGSLVPLPQRNVDTGLGLERLAS 232

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ + + +D D+F        +       G    + R++ DH+RS+  +I DG+ PA  
Sbjct: 233 LLQGERSVFDGDVFAPW-----RRLLPPLWGLGETSLRLVSDHVRSAVVVIGDGVRPAAT 287

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP--ELIQAKLLIEETLRS 353
           GRGYVLRR++RRA+        +          +   +       E  +    +  TL  
Sbjct: 288 GRGYVLRRLVRRALTTLWRTDPSYGFGELPRELVTGTLAHFGQGEEDPETVRRVLRTLGD 347

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           E+ RF   LDRG      VL+       L  D    L+DTHGLP D++Q +    
Sbjct: 348 EEARFRSLLDRGRR----VLAAPRYRGPLTEDDLHYLHDTHGLPRDLVQSLREET 398


>gi|213648835|ref|ZP_03378888.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 401

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 152/404 (37%), Positives = 237/404 (58%), Gaps = 13/404 (3%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G   G G    + D QK  +    H 
Sbjct: 1   DGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFAVDDTQKYGQ-AIGHL 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +  G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HV+Q GS ++   L
Sbjct: 60  GKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVAQKGSLVSDKVL 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H++ +  +E++ +ED VN  I +NLP+ T IM+ + A A GA AL G KY++RVR
Sbjct: 120 RFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETNIMDLDAAKAKGAMALFGEKYDERVR 179

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+S+     G  S+ LCGGTH S TG+I L  I+SES   AGIRRIEA+TG+ A + +  
Sbjct: 180 VLSM-----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGIRRIEAVTGEGAMATVHA 234

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIA 792
           Q ++L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          + 
Sbjct: 235 QSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEKELQQLKDQAAAQESANLSSKAVDLN 294

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            V  +   ++ ++ K L++++D L+ ++ S +I+L  +  E K S++  V++D+ DR  A
Sbjct: 295 GVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVLATVV-EGKVSLIAGVSKDVTDRVKA 353

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +L  + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 354 GELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVQGWV 396


>gi|153869734|ref|ZP_01999269.1| alanyl-tRNA synthetase [Beggiatoa sp. PS]
 gi|152073804|gb|EDN70735.1| alanyl-tRNA synthetase [Beggiatoa sp. PS]
          Length = 357

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 134/360 (37%), Positives = 209/360 (58%), Gaps = 12/360 (3%)

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               +K   + VH   +  G +     L   ID + R+  + +HSATHLLH AL  ILG 
Sbjct: 1   MFDTQKMGKVHVHLGQLTAGTIHIGDQLQAQIDAEARQATARHHSATHLLHAALRQILGE 60

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS + P+ LRFD +H +PITS +L +IE  VN+ I  N+PV TR+M+ E+A+ SG
Sbjct: 61  HVKQKGSLVEPERLRFDFSHFEPITSEQLANIERLVNEQILLNIPVQTRLMSLEEAMNSG 120

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY+++VRV+S+     G  S+ LCGGTHV   G+I L  IV+E+   AGIRRI
Sbjct: 121 AMALFGEKYDEQVRVLSM-----GDFSTELCGGTHVRQVGDIGLFKIVAETGTAAGIRRI 175

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EAITG RA   +   +++L  +   LK +Q ++  RV ++ E  R  +   ++ + +L  
Sbjct: 176 EAITGIRALDWVAETEKQLNVIGDLLKTNQNSLTERVAQLIEYNRNYEKEISRLQAKLAS 235

Query: 784 EDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
              S       +I  +  ++  +  +D K+L++ +D L+ K+ + +++L  + K+ K S+
Sbjct: 236 NQGSDLASQAVEINGIKILAAQLDNIDVKQLRNTLDQLKNKLGTAVVVL-SLVKDNKISL 294

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  VT+D  D+  A +L    AK + GG GGGRP MAQ GG + +K   A+  V  ++++
Sbjct: 295 VAGVTKDATDKIKAGELLNYVAKQV-GGKGGGRPDMAQGGGNDPSKLTPALQSVTQWVEE 353


>gi|148645080|gb|ABR01064.1| AlaS [uncultured Geobacter sp.]
          Length = 171

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 95/171 (55%), Positives = 117/171 (68%), Gaps = 2/171 (1%)

Query: 42  GMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           GM  FK+ F G EK  Y    + QKCVRAGGKHNDL+ VGRT RHHTFFEMLGNFSFG Y
Sbjct: 1   GMNQFKDCFLGLEKRDYVRAASSQKCVRAGGKHNDLEIVGRTARHHTFFEMLGNFSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW 161
           FK+ AI  AW+ LT +  LD+ RLY+TVY ED+EA ++W    G+  ++I R    DNFW
Sbjct: 61  FKKEAIAYAWEFLTVDLGLDKERLYVTVYTEDDEAAEIWHTQEGVPRERIYRFGEKDNFW 120

Query: 162 SMAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQ 210
           SM + GPC PC+EIF+D G  +  G P      + +RY+EIWN VFMQF +
Sbjct: 121 SMGDAGPCHPCTEIFWDNGPEVGCGSPDCAVGCDCDRYMEIWNNVFMQFNR 171


>gi|289677327|ref|ZP_06498217.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 453

 Score =  317 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 198/487 (40%), Positives = 275/487 (56%), Gaps = 34/487 (6%)

Query: 190 SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLF 249
             E+G+RYIEIWN VFMQF +        LP  S+DTGMGLER++ VLQ   +NY+IDLF
Sbjct: 1   PEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVSAVLQHVHSNYEIDLF 60

Query: 250 KHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           + L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+NEGRGYVLRRI+RRA 
Sbjct: 61  QSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSNEGRGYVLRRIIRRAC 118

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
            +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E+E+F KTL++GL +L
Sbjct: 119 RHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGEEEQFAKTLEQGLKIL 178

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
           +  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L  +D   F + ++ QR RA
Sbjct: 179 EQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LDEAGFEREMDAQRVRA 236

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           R+ S           + SL +   ATQF GY    G                       S
Sbjct: 237 RSASSFGM------DYNSLVKVDVATQFTGYSATTG-----------------------S 267

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G       R  ++D  K 
Sbjct: 268 ASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGFLQAGDARFDVSDTTKT 327

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
               F+HH +V  G L     +   +  + R    +NHSATHLLH AL  +LG HV Q G
Sbjct: 328 GG-AFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLLHAALRQVLGEHVQQKG 386

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           S +    LRFD +H + I   +L+++ED VN  I +N  V+T   + + A   GA AL G
Sbjct: 387 SLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEETDIDTAKKKGAMALFG 446

Query: 670 TKYNDRV 676
            KY D V
Sbjct: 447 EKYGDSV 453


>gi|320534359|ref|ZP_08034846.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133441|gb|EFW25902.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 632

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 196/650 (30%), Positives = 321/650 (49%), Gaps = 47/650 (7%)

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
            ++ V  RV+ DH+RS+  LI+DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  L
Sbjct: 11  HHDDVRMRVVADHVRSALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTL 70

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK------D 379
           L A    M ++YPEL      I E    E++ F +TL  G  +LD  ++   K       
Sbjct: 71  LTASKDAMKASYPELETGWSAICEVAYGEEDAFRRTLAAGTTILDIAVASAKKEAGRTGR 130

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
            +++G  AF+L+DT+G P+D+  ++   +G   +D  +F   + EQ+ RARA +    +G
Sbjct: 131 PLVSGKSAFELHDTYGFPIDLTLEMAAEQG-VDVDESAFRSLMNEQKERARADARAKKTG 189

Query: 440 TTEKIWFSLKEK--YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
             +   F   EK   G + F+GY                         +   + V  ++ 
Sbjct: 190 HADIRVFRELEKEMGGGSTFLGYTE-----------------------SSAEATVAGVLV 226

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVH 556
            G       +  +VEV+ D+TPFYAE GGQL D G   + DG  +++ DVQ   +G+ VH
Sbjct: 227 GGVPQSVVTAPAEVEVILDRTPFYAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVH 286

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
              +  G +         ID   R  ++  H++TH++H AL  I+  + +Q GS  +P  
Sbjct: 287 RGTLTEGTIAVGEKAFAQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSR 346

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           +RFD  H   +   ++  IE+ VN  ++++L V   +M+ + A A+GA AL G KY   V
Sbjct: 347 MRFDFRHGSALAGDQISGIEERVNARLSEDLAVTDEVMDIDAARAAGAMALFGEKYGKEV 406

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVVS+    GG  S  LC GTHV STG I  + ++ ESSI +G+RRI+A+ G+ A  +  
Sbjct: 407 RVVSI----GGDWSKELCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGAYGYQA 462

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKI 791
            +   +  L++ +     ++  RVE +    +  +   A  +        +       ++
Sbjct: 463 KEHALVSQLSTMVGGRPEDLPERVESLMTRLKDAEKRLAAAEQAALSARTAGIVSDAVRV 522

Query: 792 ADVNFMSHIISEV-DSKELKSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLL 847
            +V   S  +  V  +  ++S++   + ++      ++ +  +   +   V+        
Sbjct: 523 DEVRLASANLGSVGSADAVRSLVLDARSRLGDSDPAVVAVGAVVGSRPVVVVATSAGARD 582

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
               A  L R +A+VLGGGG GG+  +AQ GG N    D+A+  VA  +K
Sbjct: 583 KGIRAGALVRTAAQVLGGGG-GGKDDLAQGGGQNPEALDEALRAVAEQIK 631


>gi|145488850|ref|XP_001430428.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397526|emb|CAK63030.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1159

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 183/886 (20%), Positives = 316/886 (35%), Gaps = 170/886 (19%)

Query: 20   HELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLD 78
               +    ++      + +  +G+  F+    TG+  P    +   Q CVR     NDLD
Sbjct: 315  CTAIDRYPVVARWRNDVDYVAAGIYCFQPFCVTGEMDPPANPLICPQFCVR----FNDLD 370

Query: 79   NVGRTNRHHTFFEMLGNFSFGGY------FKERAIQLAWDLLTKEFDLDQRRLYITVYDE 132
            N+G T RH++ F MLG  +F  Y      FKE  ++  +  LT+E +++           
Sbjct: 371  NIGLTGRHYSGFIMLGIQTFN-YPEKYVFFKEECVEFNYRWLTEELEINPDD-------- 421

Query: 133  DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE 192
                                 IT  ++ W+    G  GP  E F                
Sbjct: 422  ---------------------ITFIEDVWAGG--GNLGPSVEYFV--------------- 443

Query: 193  EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
                 +E+ N+VFMQ++  +      LP   IDTG+GLER+  ++     +Y  D+F   
Sbjct: 444  ---NGLEVGNMVFMQYKYFHDGSYEELPIKIIDTGIGLERIPWLINGSPTSYH-DVFAGA 499

Query: 253  IQASEQVTGMKYEGNNIVN----------------------------------------- 271
                 +   ++Y                                                
Sbjct: 500  FAYLSEKLQVQYSNEVWKAFGPYSCLLNVDEIENVDKTWEYISTQIGYDVPTIKKEIEQL 559

Query: 272  --HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL--- 326
                +I+DH R+   ++ DG LP+N G G  +R I+RR     +   + E L M  L   
Sbjct: 560  KDMYIILDHTRTVMMVVTDGSLPSNVGGGSNIRNIIRRVFAVLKKNSWWEKLGMDGLLQL 619

Query: 327  -PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
                  ++   Y    + K      ++ E ER+ KT D     +        K+  L+ D
Sbjct: 620  FQEHKNDLAKLYGPFGEYKSFDL-IIKQEYERWAKTDDD--KKVKLEKLLKQKNNQLSID 676

Query: 386  VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
                   THG+P D +  I            +    L ++ +R       +   T     
Sbjct: 677  DWIFAMSTHGIPADTISQISK-----LPIPGNLYAELADRAARITKAPEAILYNTV---- 727

Query: 446  FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
                     T  + Y   +  KF  +   +       +L N                   
Sbjct: 728  -----HLPETVNLYYQTPKDGKFNAKIVTIFSNVQQQNLPN------------------- 763

Query: 506  VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
                   V+ +Q+ FY   GGQ  D G     G R  + +VQK  + +           +
Sbjct: 764  ------IVILNQSAFYPFGGGQDYDQGWLTIQGERHFVNNVQKVGKVVLHILDKPLSDPI 817

Query: 566  --RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                   ++  ID   R  L  +H+ATH++  A   +LG HV QNG+  + +    D+TH
Sbjct: 818  DTYVNQEILAEIDLDRRTILRNHHTATHIVFAACRRVLGPHVWQNGAHKSVNNAHLDITH 877

Query: 624  SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSV 681
              P+T  + ++IE+ VN II     +    M++ DA       L        + +RVV++
Sbjct: 878  FAPLTKEQEQNIENEVNKIILSARQINKGFMSKSDAEKEYGFRLYQGGIVPGNELRVVNI 937

Query: 682  EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
            E  D        C GTH  ST E+  + I+    ++ G+ R+  + G +    L  + E 
Sbjct: 938  EGID-----VEACCGTHCDSTSEVGWVRILKTQKLQDGVVRLYYVAGVKTIEVLNSEGEM 992

Query: 742  LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
            +  L     +S+  +V    +I++E +  +  +   K +L    +  + I   N  + I 
Sbjct: 993  INQLVKLWSISKNQLVEEGSKIFQEKKHYETAYNSIKAELIKSQMK-YVIDGPNLKTIIQ 1051

Query: 802  SEVDS-----KELKSVMDALQKKIQSGIIM----LVGISKEKKASV 838
            S   +      E+   +  L+   +  I +    L G   +   +V
Sbjct: 1052 SNETNPTAYFSEIGKYIQQLKDSKKGLIFVADTFLYGAFGDGNFNV 1097


>gi|118576438|ref|YP_876181.1| alanyl-tRNA synthetase [Cenarchaeum symbiosum A]
 gi|205830019|sp|A0RX10|SYA_CENSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118194959|gb|ABK77877.1| alanyl-tRNA synthetase [Cenarchaeum symbiosum A]
          Length = 894

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 168/771 (21%), Positives = 275/771 (35%), Gaps = 168/771 (21%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTTVQKCVRA 70
           E+F KNGHE +P   ++      L FT + +V F+ +       +     +   Q C+R 
Sbjct: 80  EYFVKNGHESVPRYPVVCRWRDDLYFTIASIVDFQRVMGSSVVFEFPANPLVVPQTCLR- 138

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSF---GGYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  +    GGY+K+  I L + LL ++  + +  +  
Sbjct: 139 ---FKDLENVGVTGRHFSSFCMIGQHAVPGNGGYWKDECIDLDYGLLVRQLGIPKEEV-- 193

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
            V+ ED                           W+    G  GP  E +           
Sbjct: 194 -VFVED--------------------------VWAGG--GSFGPSLEYYV---------- 214

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                   R +E+ N VF +F Q        L +  ID G GLER A +       YD  
Sbjct: 215 --------RGLELGNAVFTEF-QGELGNHTTLDRRIIDMGAGLERFAWITTGTPTAYDC- 264

Query: 248 LFKHLIQASEQVTGMKYEGNNIVNH----------------------------------- 272
            F  ++    +  G   +   +  +                                   
Sbjct: 265 CFGPVMGRLAESLGADQDSAELAAYYTRVAVNLGRCGDLNEARRRSAQEAGISDSRMAGA 324

Query: 273 -------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
                   ++ DH+R+  F I+DG LP+N G GY LR ++RR         +    +  L
Sbjct: 325 IAPLGEAYMVADHIRTLIFAISDGALPSNVGGGYNLRMMLRRVAGAMER-TFPGLDLDEL 383

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
           +      +   YPEL  A+  ++  L  E  R+G + +R   +   +        +   D
Sbjct: 384 VDLHIDYLMGTYPELDGARQDVKTILDIEASRYGDSKERMGKITAKITDRGRAPGV---D 440

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
               LY++ G+  + +       G        F   L+E  +     +            
Sbjct: 441 ELVTLYESDGITPEYLI----EAGAIQEVPPEFYSRLDELHAPPPKAAGPGPE------- 489

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
                    T+ + Y                                       E     
Sbjct: 490 ---LAGLADTEMLFYGEDPP----------------------------------EFEARV 512

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           +      VV D+T FYA  GGQ  D G   G  +             +       + G L
Sbjct: 513 MHSSDGGVVLDRTSFYARGGGQEPDHGTIGGFRVTDVSKHGGIILHRL-------DGGSL 565

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               ++    D + R  ++ NH++TH+L+ +   +LGS V Q+ +    D  R D+TH  
Sbjct: 566 AEGSTVRCIRDEKRRAGITRNHTSTHILNASARGVLGSWVWQHSAFKEEDHARLDITHHS 625

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEY 683
           P+++AE+K IE   N I+ ++  V      R +A       +          VR+V+++ 
Sbjct: 626 PLSAAEVKKIEAAANGIVKEDRGVSIGYHPRGEAEQKYGFRIYQGGVVPVSTVRIVTIKG 685

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            D        CGGTHV STGE+ L+ I     I+ G+ R+E ++G  A  H
Sbjct: 686 YDD-----EACGGTHVKSTGEVGLIRITRTKRIQDGVVRLEFVSGDAAIEH 731


>gi|222636774|gb|EEE66906.1| hypothetical protein OsJ_23751 [Oryza sativa Japonica Group]
          Length = 1329

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 108/372 (29%), Positives = 174/372 (46%), Gaps = 48/372 (12%)

Query: 15  FQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ--------K 66
           F+   H     S+++   D  L+F ++ M  F  +               Q        K
Sbjct: 12  FESKAHTRCSPSTILAVKDSPLLFADAEMNQFMPVLLDTA------AQGSQLGCPGHACK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +R          V   +RH TF E+LGN+SFG YFKE AI  AW+LLTK ++L+  R++
Sbjct: 66  SLRCIP-------VAVDDRHLTFTEVLGNWSFGDYFKEEAIGFAWELLTKVYELEVDRIF 118

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T +  DE        E+  +W K   L +DK++ +    NF+   +TGPCGPCS+I+FD
Sbjct: 119 VTYFGGDEKSGLAPDLESKHIWLKY--LPSDKVLPLVNKGNFYQNGDTGPCGPCSQIYFD 176

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           Q           + +    IEIWNLVF QF ++            + TG+  E++ ++LQ
Sbjct: 177 QIGHHD-VASLLNNDDPGCIEIWNLVFFQFNKEAGGILMPSSAKHVGTGLNFEQLTSILQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQV-----------TGMKYEGNNIVNHRVIVDHLRSSSFLIA 287
           +K + +D D+    I +  Q             G        + +R++ DH+R+SSF IA
Sbjct: 236 KKKSKFDTDILMPTIDSIRQCTGNEIQPYSGKFGPDDINEVDLAYRIVADHIRTSSFAIA 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG  P  E    + R ++RRA+ +    L   +  +  L+ A    M   +PEL+  +  
Sbjct: 296 DGSQPGIE----IARNMLRRAIYFGHQNLKAKQRFLTILVSAFIESMSGDFPELLHNEKK 351

Query: 347 IEETLRSEDERF 358
           I++ +  E+  F
Sbjct: 352 IKDIIAEEEITF 363


>gi|300214776|gb|ADJ79192.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 230

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 98/233 (42%), Positives = 136/233 (58%), Gaps = 17/233 (7%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+FF+  GH+++ S+ LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  +
Sbjct: 61  HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITVY ED++A K W +  G+    I      DNFW + E GP GP SEIF
Sbjct: 117 WFDMDKEKLYITVYPEDKDAKKYW-EEVGVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 172

Query: 177 FDQGECIPGGLPGSSEEGE-----RYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           FD+G+ +        E        RY+EIWN+VF +F     +        ++
Sbjct: 173 FDRGQEMNNLPEDDPESYPGGENERYLEIWNIVFSEFNHNQMEHMNHCHIKTL 225


>gi|302551517|ref|ZP_07303859.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302469135|gb|EFL32228.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 396

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 138/416 (33%), Positives = 210/416 (50%), Gaps = 28/416 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N      TF +F+++ GH L+  S+L+P     ++FT SGM P      G+     + +
Sbjct: 1   MNTDRTVRTFTDFYRERGHRLVTGSTLLPPPSDPVLFTTSGMHPLTPYLMGRPHSQGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T VQ+C+R      DLD VG  + H T FEMLG++S G Y  E++++ A +LL   F + 
Sbjct: 61  TNVQRCLRT----TDLDEVG-DSTHLTVFEMLGSWSLGDYGHEQSLRWAHELLRDGFGIP 115

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              L+ TV+  D+      E+ + W+++ G+  +    +T  +N+W     GPCGP SEI
Sbjct: 116 HGHLHATVFGGDDQVGPDTESLRTWRQL-GVPVE----LTREENWWDNGPVGPCGPDSEI 170

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G        GS     R++EIWN V M++++Q       LP+ SIDTGMGLER+ T
Sbjct: 171 FVWTG-GPGTPPQGSPTTDPRWVEIWNHVLMRYDRQEDGTLEPLPRPSIDTGMGLERLVT 229

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ  T+ YD DLF+  ++             +    R++ DHLRSS  ++ DG+ P   
Sbjct: 230 VLQGHTSVYDSDLFEPWMRLL-----PPLWDLDEPTLRLVSDHLRSSVVILGDGVHPTAN 284

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RR +        +  L    +  L   +  A+         + E L  E+
Sbjct: 285 GRGYVLRRLVRRLLTALWRDDPSRTLSDLPVELLDHTL--AHFHQPGGSTPVREVLLGEE 342

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
            RF   L RG      VLS       L+ D   +L+DT+GLP D++  +L    ++
Sbjct: 343 RRFATLLVRGRR----VLSRPEFRGPLSEDDYDRLHDTYGLPRDLVAGLLAGMPMS 394


>gi|302518052|ref|ZP_07270394.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|302426947|gb|EFK98762.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 403

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 131/414 (31%), Positives = 211/414 (50%), Gaps = 31/414 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               +   F EF+++ GH  +  S+L+P   D +++FT SGM P      G+  P+ + +
Sbjct: 5   TTDQVSRRFTEFYEERGHARITGSTLLPPPGDDSVLFTTSGMHPLTPYLEGRPHPLGRRL 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DL+ VG    H T FEMLG +S G Y   R+++  ++LLT    +D
Sbjct: 65  VNVQRCLRT----TDLEEVG-DPTHLTVFEMLGTWSLGDYEGPRSLEWGYELLTDGLGID 119

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            R L+ TV+  DE       + ++W+++ G+  ++    T  DN+WS   TGPCGP SEI
Sbjct: 120 PRLLHTTVFGGDERVGPDLASLEVWERL-GVPVER----TAEDNWWSNGPTGPCGPDSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G+   G    +    ER++E+WN V M+  +        LP+ ++DTG+GLER+A+
Sbjct: 175 FLWTGD---GPPESTPTGDERWVEVWNHVMMRHRRLADGSLVPLPQRNVDTGLGLERLAS 231

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ + + +D D+F+       +       G +  + R++ DHLRS+  ++ DG+ PA  
Sbjct: 232 LLQGERSVFDGDVFEPW-----RRLLPPLWGLDETSVRLVSDHLRSAVVVLGDGVRPAAT 286

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP--ELIQAKLLIEETLRS 353
           GRGYVLRR++RR +        +  L       +   +G      E  +    +  TL  
Sbjct: 287 GRGYVLRRLVRRVLTTLWRTDSSYGLGELPRELVTGTLGHFGQGGEDPETVRRVLGTLAE 346

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E+ RF   LDRG      VL+       L+      L+DTHGLP D+++ +   
Sbjct: 347 EETRFRSLLDRGRR----VLAGPRFRGPLDEADLHYLHDTHGLPRDLVESLREE 396


>gi|159108361|ref|XP_001704452.1| Alanyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157432515|gb|EDO76778.1| Alanyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 969

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 188/952 (19%), Positives = 331/952 (34%), Gaps = 194/952 (20%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLD 78
           H ++P   ++        FT +G+  ++    TG+ +P    +   Q C+R     NDLD
Sbjct: 106 HTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPANPLIQPQLCLR----FNDLD 161

Query: 79  NVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDED 133
           ++G + RH++ F MLG   F       YFKE  I+   +                     
Sbjct: 162 SIGLSGRHYSGFTMLGIQVFNTSTKYVYFKEEIIRFNLE--------------------- 200

Query: 134 EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE 193
                 W +  G+  D++  I      W+    G  GPC E F                 
Sbjct: 201 ------WLQTMGIDLDEVTLIAD---VWAGG--GNLGPCVEYFM---------------- 233

Query: 194 GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY--------- 244
               +E+ N+VFM+F+         LP   +D G+GLER+  +L     +Y         
Sbjct: 234 --HGLEVGNMVFMEFKAFADGTIEPLPVQVVDVGIGLERIPWLLNRSVTSYITAFPTALK 291

Query: 245 -------------DIDLFKHLIQASEQVT-----------------------GMKYEGNN 268
                        + D+++   + S  +                         +      
Sbjct: 292 QMSQLIGITDDVINGDVWRRFGRYSCLLNIDEVSDISQAWALIKERTGLTTEDITNVIEP 351

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328
           +    +++DHLRS    I DG LP+N G G  LR ++RR        G+ + +       
Sbjct: 352 VRQMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVFHILVSRGWWDAIGGIDGLC 411

Query: 329 LCTEMGSAYPELIQ------AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
              +      E +           +   L  E  R+  T       ++ +L        L
Sbjct: 412 QIIDYHRQDLEEVHGAGSFPPFKPLRAVLELEYTRWTTTDKDARDKVEKLLKKGKGH--L 469

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           + +    +  T GL  D + ++        +      Q  +     A A      S    
Sbjct: 470 SIEDWVTIVTTFGLNADQVSELTGIPVPENLYSHVAEQQEKNAIKVAVAQLYDTVS---- 525

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
                       T  + Y    G K  K                   + V +I    E  
Sbjct: 526 ---------LPPTDCVYYTKPYGEKLRK----------------LADAKVVSIFANMED- 559

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-----DVQKKAEGIFVHH 557
               S  +  V+ D+T FY  +GGQ  DTG         ++      DV+K    +    
Sbjct: 560 ---KSKGRNLVILDKTVFYPTSGGQQHDTGVLKFLLGNGKMIIHDVVDVRKVGHCVMHEL 616

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  +    S+ + ID   R QL  +H+A H++H   + +LG HV Q G+  T +  
Sbjct: 617 NAPVADSIVQGTSVSMAIDSARRDQLMCHHTAAHVIHATANKVLGPHVWQAGAKKTTEVA 676

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDR 675
             D+TH + +T  E ++IE   N +I  N+P+    + + +A      +L          
Sbjct: 677 TLDITHYRSLTFDEERAIEREANRMIRDNIPIRKYQLPKNEAEKKYGFSLYQGGVVPGST 736

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR V +   D     +  C GTH+ +TG+I L+ IV  + I  G+ R+  + G+RA    
Sbjct: 737 VRCVDITDHD-----TEACCGTHLDNTGKIGLIRIVKSTRISDGVVRLTFVAGERALDFT 791

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIAD 793
             Q E L +      V Q  +V   ++ +   ++L+ +  + + +L   +L  +  +I+ 
Sbjct: 792 DTQSEILHTQMDRWGVDQAGIVKTGDKFFTAMKRLENLTVQLRGELLTSNLTYAATRISS 851

Query: 794 VNFMSHIISEVD------SKE--LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
              +  +  E        + E  LK + D  +  +Q+ +  +           +  V   
Sbjct: 852 ALTVFEVSDESPTLLLSSAGEPCLKLLADD-KGILQTTVAFIGET-------FVFAVGPS 903

Query: 846 LLDRFNAVDLARLSAKVL------------GGGGGGGRPHMAQSGGPNGNKA 885
                 A++  +  +K+             GG    G     Q+ G N    
Sbjct: 904 -SGYVTAIE--QEVSKICSSCRTKKTPLRKGGKKAKGSD---QADGENVQLI 949


>gi|10798907|gb|AAG23137.1|AF245445_1 alanyl-tRNA synthetase [Giardia intestinalis]
          Length = 954

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 188/952 (19%), Positives = 331/952 (34%), Gaps = 194/952 (20%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLD 78
           H ++P   ++        FT +G+  ++    TG+ +P    +   Q C+R     NDLD
Sbjct: 91  HTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPANPLIQPQLCLR----FNDLD 146

Query: 79  NVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDED 133
           ++G + RH++ F MLG   F       YFKE  I+   +                     
Sbjct: 147 SIGLSGRHYSGFTMLGIQVFNTSTKYVYFKEEIIRFNLE--------------------- 185

Query: 134 EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE 193
                 W +  G+  D++  I      W+    G  GPC E F                 
Sbjct: 186 ------WLQTMGIDLDEVTLIAD---VWAGG--GNLGPCVEYFM---------------- 218

Query: 194 GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY--------- 244
               +E+ N+VFM+F+         LP   +D G+GLER+  +L     +Y         
Sbjct: 219 --HGLEVGNMVFMEFKAFADGTIEPLPVQVVDVGIGLERIPWLLNRSVTSYITAFPTALK 276

Query: 245 -------------DIDLFKHLIQASEQVT-----------------------GMKYEGNN 268
                        + D+++   + S  +                         +      
Sbjct: 277 QMSQLIGITDDVINGDVWRRFGRYSCLLNIDEVSDISQAWALIKERTGLTTEDITNVIEP 336

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328
           +    +++DHLRS    I DG LP+N G G  LR ++RR        G+ + +       
Sbjct: 337 VRQMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVFHILVSRGWWDAIGGIDGLC 396

Query: 329 LCTEMGSAYPELIQ------AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
              +      E +           +   L  E  R+  T       ++ +L        L
Sbjct: 397 QIIDYHRQDLEEVHGAGSFPPFKPLRAVLELEYTRWTTTDKDARDKVEKLLKKGKGH--L 454

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           + +    +  T GL  D + ++        +      Q  +     A A      S    
Sbjct: 455 SIEDWVTIVTTFGLNADQVSELTGIPVPENLYSHVAEQQEKNAIKVAVAQLYDTVS---- 510

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
                       T  + Y    G K  K                   + V +I    E  
Sbjct: 511 ---------LPPTDCVYYTKPYGEKLRK----------------LADAKVVSIFANMED- 544

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-----DVQKKAEGIFVHH 557
               S  +  V+ D+T FY  +GGQ  DTG         ++      DV+K    +    
Sbjct: 545 ---KSKGRNLVILDKTVFYPTSGGQQHDTGVLKFLLGNGKMIIHDVVDVRKVGHCVMHEL 601

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  +    S+ + ID   R QL  +H+A H++H   + +LG HV Q G+  T +  
Sbjct: 602 NAPVADSIVQGTSVSMAIDSARRDQLMCHHTAAHVIHATANKVLGPHVWQAGAKKTTEVA 661

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDR 675
             D+TH + +T  E ++IE   N +I  N+P+    + + +A      +L          
Sbjct: 662 TLDITHYRSLTFDEERAIEREANRMIRDNIPIRKYQLPKNEAEKKYGFSLYQGGVVPGST 721

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR V +   D     +  C GTH+ +TG+I L+ IV  + I  G+ R+  + G+RA    
Sbjct: 722 VRCVDITDHD-----TEACCGTHLDNTGKIGLIRIVKSTRISDGVVRLTFVAGERALDFT 776

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIAD 793
             Q E L +      V Q  +V   ++ +   ++L+ +  + + +L   +L  +  +I+ 
Sbjct: 777 DTQSEILHTQMDRWGVDQAGIVKTGDKFFTAMKRLENLTVQLRGELLTSNLTYAATRISS 836

Query: 794 VNFMSHIISEVD------SKE--LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
              +  +  E        + E  LK + D  +  +Q+ +  +           +  V   
Sbjct: 837 ALTVFEVSDESPTLLLSSAGEPCLKLLADD-KGILQTTVAFIGET-------FVFAVGPS 888

Query: 846 LLDRFNAVDLARLSAKVL------------GGGGGGGRPHMAQSGGPNGNKA 885
                 A++  +  +K+             GG    G     Q+ G N    
Sbjct: 889 -SGYVTAIE--QEVSKICSSCRTKKTPLRKGGKKAKGSD---QADGENVQLI 934


>gi|318060582|ref|ZP_07979305.1| alanyl tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318076177|ref|ZP_07983509.1| alanyl tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 403

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 131/414 (31%), Positives = 211/414 (50%), Gaps = 31/414 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               +   F EF+++ GH  +  S+L+P   D +++FT SGM P      G+  P+ + +
Sbjct: 5   TTDQVSRRFTEFYEERGHARITGSTLLPPPGDDSVLFTTSGMHPLTPYLEGRPHPLGRRL 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DL+ VG    H T FEMLG +S G Y   R+++  ++LLT    +D
Sbjct: 65  VNVQRCLRT----TDLEEVG-DPTHLTVFEMLGTWSLGDYEGPRSLEWGYELLTDGLGID 119

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            R L+ TV+  DE       + ++W+++ G+  ++    T  DN+WS   TGPCGP SEI
Sbjct: 120 PRLLHTTVFGGDERVGPDLASLEVWERL-GVPVER----TAEDNWWSNGPTGPCGPDSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G+   G    +    ER++E+WN V M+  +        LP+ ++DTG+GLER+A+
Sbjct: 175 FLWTGD---GPPESTPTGDERWVEVWNHVMMRHRRLADGSLVPLPQRNVDTGLGLERLAS 231

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ + + +D D+F+       +       G +  + R++ DHLRS+  ++ DG+ PA  
Sbjct: 232 LLQGERSVFDGDVFEPW-----RRLLPPLWGLDETSVRLVSDHLRSAVVVLGDGVRPAAT 286

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP--ELIQAKLLIEETLRS 353
           GRGYVLRR++RR +        +  L       +   +G      E  +    +  TL  
Sbjct: 287 GRGYVLRRLVRRVLTMLWRTDSSYGLGELPRELVTGTLGHFGQGGEDPETVRRVLGTLAE 346

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E+ RF   LDRG      VL+       L+      L+DTHGLP D+++ +   
Sbjct: 347 EETRFRSLLDRGRR----VLAGPRFRGPLDEADLHYLHDTHGLPRDLVESLRGE 396


>gi|6176444|gb|AAF05594.1|AF188719_1 alanyl-tRNA synthetase [Giardia intestinalis]
          Length = 969

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 188/952 (19%), Positives = 330/952 (34%), Gaps = 194/952 (20%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLD 78
           H ++P   ++        FT +G+  ++    TG+ +P    +   Q C+R     NDLD
Sbjct: 106 HTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPANPLIQPQLCLR----FNDLD 161

Query: 79  NVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDED 133
           ++G + RH++ F MLG   F       YFKE  I+   +                     
Sbjct: 162 SIGLSGRHYSGFTMLGIQVFNTSTKYVYFKEEIIRFNLE--------------------- 200

Query: 134 EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE 193
                 W +  G+  D++  I      W+    G  GPC E F                 
Sbjct: 201 ------WLQTMGIDLDEVTLIAD---VWAGG--GNLGPCVEYFM---------------- 233

Query: 194 GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY--------- 244
               +E+ N+VFM+F+         LP   +D G+GLER+  +L     +Y         
Sbjct: 234 --HGLEVGNMVFMEFKAFADGTIEPLPVQVVDVGIGLERIPWLLNRSVTSYITAFPTALK 291

Query: 245 -------------DIDLFKHLIQASEQVT-----------------------GMKYEGNN 268
                        + D+++   + S  +                         +      
Sbjct: 292 QMSQLIGITDDVINGDVWRRFGRYSCLLNIDEVSDISQAWALIKERTGLTTEDITNVIEP 351

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328
           +    +++DHLRS    I DG LP+N G G  LR ++RR        G+ + +       
Sbjct: 352 VRQMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVFHILVSRGWWDAIGGIDGLC 411

Query: 329 LCTEMGSAYPELIQ------AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
              +      E +           +   L  E  R+  T       ++ +L        L
Sbjct: 412 QIIDYHRQDLEEVHGAGSFPPFKPLRAVLELEYTRWTTTDKDARDKVEKLLKKGKGH--L 469

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           + +    +  T GL  D + ++        +      Q  +     A A      S    
Sbjct: 470 SIEDWVTIVTTFGLNADQVSELTGIPVPENLYSHVAEQQEKNAIKVAVAQLYDTVS---- 525

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
                       T  + Y    G K  K                   + V +I    E  
Sbjct: 526 ---------LPPTDCVYYTKPYGEKLRK----------------LADAKVVSIFANMED- 559

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-----DVQKKAEGIFVHH 557
               S  +  V+ D+T FY  +GGQ  DTG         ++      DV+K    +    
Sbjct: 560 ---KSKGRNLVILDKTVFYPTSGGQQHDTGVLKFLLGNGKMIIHDVVDVRKVGHCVMHEL 616

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  +    S+ + ID   R QL  +H+A H++H   + +LG HV Q G+  T +  
Sbjct: 617 NAPVADSIVQGTSVSMAIDSARRDQLMCHHTAAHVIHATANKVLGPHVWQAGAKKTTEVA 676

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDR 675
             D+TH + +T  E ++IE   N +I  N+P+    + +  A      +L          
Sbjct: 677 TLDITHYRSLTFDEERAIEREANRMIRDNIPIRKYQLPKNKAEKKYGFSLYQGGVVPGST 736

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR V +   D     +  C GTH+ +TG+I L+ IV  + I  G+ R+  + G+RA    
Sbjct: 737 VRCVDITDHD-----TEACCGTHLDNTGKIGLIRIVKSTRISDGVVRLTFVAGERALDFT 791

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIAD 793
             Q E L +      V Q  +V   ++ +   ++L+ +  + + +L   +L  +  +I+ 
Sbjct: 792 DTQSEILHTQMDRWGVDQAGIVKTGDKFFTAMKRLENLTVQLRGELLTSNLTYAATRISS 851

Query: 794 VNFMSHIISEVD------SKE--LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
              +  +  E        + E  LK + D  +  +Q+ +  +           +  V   
Sbjct: 852 ALTVFEVSDESPTLLLSSAGEPCLKLLADD-KGILQTTVAFIGET-------FVFAVGPS 903

Query: 846 LLDRFNAVDLARLSAKVL------------GGGGGGGRPHMAQSGGPNGNKA 885
                 A++  +  +K+             GG    G     Q+ G N    
Sbjct: 904 -SGYVTAIE--QEVSKICSSCRTKKTPLRKGGKKAKGSD---QADGENVQLI 949


>gi|67479233|ref|XP_654998.1| alanyl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS]
 gi|56472100|gb|EAL49612.1| alanyl-tRNA synthetase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 980

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 178/822 (21%), Positives = 302/822 (36%), Gaps = 159/822 (19%)

Query: 21  ELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
             +    ++      + F  +G+  F+    TGQ +P    +   Q C+R     NDLDN
Sbjct: 110 TAIKRYPVVARWRNDVDFVAAGIYCFQPYCVTGQLEPPANPLICPQFCLR----FNDLDN 165

Query: 80  VGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE 134
           +G + RH + F M+G   F       YFKE  +      LTKE ++          + D+
Sbjct: 166 IGISGRHFSGFIMIGLQVFNSPQKYVYFKEECVDYNLRWLTKELEI----------ELDD 215

Query: 135 EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEG 194
                              IT  ++ W     G  GP  E+F                  
Sbjct: 216 -------------------ITLIEDVWCGG--GNLGPSIEMFV----------------- 237

Query: 195 ERYIEIWNLVFMQFEQQN--KQERFILPKMSIDTGMGLERMATVLQEKTNNY-------- 244
            + +E+ N+VF Q++  +  K E   L    ID G+GLER+  ++     +Y        
Sbjct: 238 -KGLEVGNMVFTQYKILDFVKGEFEPLKHQVIDVGIGLERIPWLINGTPTSYLEAFPGAV 296

Query: 245 -----------DIDLFKHLIQASE--QVTGMKYEGNNI---------------------- 269
                      + D+            +   K                            
Sbjct: 297 KYLQSKLGVTLESDVISKFAPYCCLLNLDECKDVNKAWADIAKECGVENREVLQKAIQPA 356

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM-----MH 324
            +  +I DH R+    I DG LP+  G G  LR I+RR        G+ E L      M 
Sbjct: 357 RDLYIIADHSRTMLIAIYDGALPSAVGGGANLRNIVRRMFSILAKNGWWEKLGGMDGLME 416

Query: 325 LLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNG 384
           L      ++   Y +  + K    + +  E +R+  T       +  +L    K  +L  
Sbjct: 417 LFECHKKDLEKIYGKFDEYKSF-RKIIEMEYQRWCTTDIESQQKVQTLLKK--KKGVLTV 473

Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI 444
           D       ++GL  D + +I            +    L E   +           T +  
Sbjct: 474 DDWIFAMKSYGLSPDKINEISK-----LPIPDNLYTKLAELEDQRVKMLPTELYETAD-- 526

Query: 445 WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
                     T+ + Y+     +F                    +S + +I+   E V+E
Sbjct: 527 -------IPETKELFYENGDLREF--------------------NSEIVSIL---EKVDE 556

Query: 505 AVSGQKVE--VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
              G  V   V+  ++ FY   GGQ  DTG    DG+   +T V+K  + I  H     +
Sbjct: 557 KGKGTGVHNLVILKESAFYPIGGGQDNDTGKIKIDGVIYDVTYVEKVGKCILHHINSDLK 616

Query: 563 GILR-TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                    +   +D Q R QL  +H+ATH++H A   +LG HV QNG+  T +    D+
Sbjct: 617 NWNELKGQVVTGYVDDQRRNQLRAHHTATHIIHQAAHQVLGPHVWQNGAKKTVEEAHLDI 676

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVV 679
           TH   IT  E  +IE   N++I ++L +   ++++E+A      +L        + VR+V
Sbjct: 677 THFSSITREEENAIEKLANEMIRKSLKINKFVLSKEEAEKRYGFSLYQGGVVAGNEVRIV 736

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +   D     +  C GTH  +T ++ L+ I+  + I  G+ RI  + G  A  ++  + 
Sbjct: 737 DISGYD-----TEACCGTHCDNTSQVGLIRIIKTNRISDGVVRIRFVAGDAAYKNMAMEK 791

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             +  L     V    +   +E I+ +Y+KL    +K   ++
Sbjct: 792 NLINDLCDSYSVLPEVLQPTLERIFTDYKKLTKQSSKMIGEI 833


>gi|145640918|ref|ZP_01796500.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274432|gb|EDK14296.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 150

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 82/144 (56%), Positives = 107/144 (74%), Gaps = 2/144 (1%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKK 142
            L + +L++TVY+ D+EA+ +W K
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNK 144


>gi|308160664|gb|EFO63139.1| Alanyl-tRNA synthetase [Giardia lamblia P15]
          Length = 969

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 176/850 (20%), Positives = 307/850 (36%), Gaps = 163/850 (19%)

Query: 7   IRTTFLEFFQK-----NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQA 60
           +R  +  F Q        H ++P   ++        FT +G+  ++    TG+ +P    
Sbjct: 88  MRRVWNSFTQSFTQTTPAHTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPANP 147

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q C+R     NDLD++G + RH++ F MLG   F       YFKE  I+   +   
Sbjct: 148 LIQPQLCLR----FNDLDSIGLSGRHYSGFTMLGIQVFNTSTKYVYFKEEIIRFNLE--- 200

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                   W +  G+  D++  I      W+    G  GPC E 
Sbjct: 201 ------------------------WLQTMGIDLDEVTLIAD---VWAGG--GNLGPCVEY 231

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F                     +E+ N+VFM+F+         LP   +D G+GLER+  
Sbjct: 232 FM------------------HGLEVGNMVFMEFKAFTDGTIEPLPVQVVDVGIGLERIPW 273

Query: 236 VLQEKTNNY----------------------DIDLFKHLIQASEQVTGMKYEGNNI---- 269
           +L     +Y                      + D+++   + S  +   +    +     
Sbjct: 274 LLNRSVTSYITAFPTALKQMSQLIGITDDVINGDVWRRFGRYSCLLNIDEVSDISQAWAL 333

Query: 270 -------------------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                               +  +++DHLRS    I DG LP+N G G  LR ++RR   
Sbjct: 334 IKERTGLTTEEIINVIEPVRHMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVFH 393

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQ------AKLLIEETLRSEDERFGKTLDR 364
                G+ + +          +      E +           +   L  E  R+  T   
Sbjct: 394 ILVSRGWWDAIGGIDGLCQIIDYHRQDLEEVHGSGSFPPFKPLRAVLELEYSRWTTTDKD 453

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
               ++ +L      E L+ +    +  T GL  D + ++        +      Q  + 
Sbjct: 454 ARDKVEKLLKK--GKEQLSIEDWVTIVTTFGLNADQVSELTGIPVPDNLYSHVAEQQEKN 511

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
               A A      S                T  I Y    G K  K              
Sbjct: 512 AIKVAVAQLYDTVS-------------LPPTDCIYYTKPYGEKLHK-------------- 544

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
                + V +I+   E   +     +  V+ D+T FY  +GGQ  DTG       R ++ 
Sbjct: 545 --LAGAKVVSILTNMEDQSK----GRNLVILDKTVFYPTSGGQQHDTGVLKFILGRGKMF 598

Query: 545 -----DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
                DV+K    +           +    S+ + ID   R QL  +H+A H++H   + 
Sbjct: 599 IHNVVDVRKVGHCVMHELDAPIADSIVQGTSVSMAIDSARRDQLMCHHTAAHVIHATANK 658

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q G+  T +    D+TH + +T  E ++IE   N +I +N+P+    + + +A
Sbjct: 659 VLGPHVWQAGAKKTTEAATLDITHYRSLTFNEERAIEREANRMIRENIPIRKYQLPKNEA 718

Query: 660 IASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                 +L          VR V +   D     +  C GTH+ +TG+I L+ I+  + I 
Sbjct: 719 EKRYGFSLYQGGVVPGSIVRCVDIANHD-----TEACCGTHLDNTGKIGLIRIIKSTRIS 773

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G+ R+  + G+RA      Q E L +      V Q  +V   ++ +   ++L+ +  + 
Sbjct: 774 DGVVRLTFVAGERALDFTDTQSEILHTQMDRWGVDQAGIVKTGDKFFTAMKRLEGMTVQL 833

Query: 778 KLQLNVEDLS 787
           + +L   +L+
Sbjct: 834 RGELLNSNLN 843


>gi|167388190|ref|XP_001738467.1| Alanyl-tRNA synthetase [Entamoeba dispar SAW760]
 gi|165898303|gb|EDR25208.1| Alanyl-tRNA synthetase, putative [Entamoeba dispar SAW760]
          Length = 980

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 179/823 (21%), Positives = 300/823 (36%), Gaps = 161/823 (19%)

Query: 21  ELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
             +    ++      + F  +G+  F+    TGQ +P    +   Q C+R     NDLDN
Sbjct: 110 TAIKRYPVVARWRNDVDFVAAGIYCFQPYCVTGQLEPPANPLICPQFCLR----FNDLDN 165

Query: 80  VGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE 134
           +G + RH + F M+G   F       YFKE  +      LTKE ++          + D+
Sbjct: 166 IGISGRHFSGFIMIGLQVFNSPQKYVYFKEECVDYNLRWLTKELEI----------ELDD 215

Query: 135 EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEG 194
                              IT  ++ W     G  GP  E+F                  
Sbjct: 216 -------------------ITLIEDVWCGG--GNLGPSIEMFV----------------- 237

Query: 195 ERYIEIWNLVFMQFEQQN--KQERFILPKMSIDTGMGLERMATVLQEKTNNY-------- 244
            + +E+ N+VF Q++  +  K E   L    ID G+GLER+  ++     +Y        
Sbjct: 238 -KGLEVGNMVFTQYKILDFVKGEFEPLKHQVIDVGIGLERIPWLINGTPTSYLEAFPGAV 296

Query: 245 -----------DIDLFKHLIQASE--QVTGMKYEGNNI---------------------- 269
                      + D+            +   K                            
Sbjct: 297 KYLQSKLGVTLESDVISKFAPYCCLLNLDECKDVNKAWADIAKECGVENREVLQKAIQPA 356

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM----CYAR--LLGYTEPLMM 323
            +  +I DH R+    I DG LP+  G G  LR I+RR             LG  + L M
Sbjct: 357 RDLYIIADHSRTMLIAIYDGALPSAVGGGANLRNIVRRMFSILARNGWWEKLGGMDGL-M 415

Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN 383
            L      ++   Y +  + K    + +  E +R+  T       +  +L    K  +L 
Sbjct: 416 ELFEFHKKDLEKIYGKFDEYKSF-RKIIEMEYQRWCTTDMESQQKVQTLLKK--KKGVLT 472

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
            D       ++GL  D + +I            +    L E   +           T + 
Sbjct: 473 VDDWIFAMKSYGLSPDKINEISK-----LPVPDNLYTKLAELEDQRVKMLPTELYETAD- 526

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
                      T+ + Y+     +F  E   VL                       E V+
Sbjct: 527 --------IPETKELFYENGNLREFNSEIVSVL-----------------------EKVD 555

Query: 504 EAVSGQKVE--VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           E   G  +   V+  +T FY   GGQ  DTG    DG+   +T V+K  + I  H     
Sbjct: 556 EKGKGTGIHNLVILKETAFYPIGGGQDNDTGKIKIDGVIYDVTYVEKVGKCILHHINSDL 615

Query: 562 RGILR-TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           +         ++  +D Q R QL  +H+ATH++H A   +LG HV QNG+  T +    D
Sbjct: 616 KNWEELKGKMVIGYVDDQRRNQLRAHHTATHIIHQAAHQVLGPHVWQNGAKKTVEEAHLD 675

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRV 678
           +TH   IT  E  +IE   N++I ++L +   ++++E+A      +L        + VR+
Sbjct: 676 ITHFSSITREEENAIEKLANEMIRKSLKINKFVLSKEEAEKRYGFSLYQGGVVAGNEVRI 735

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +   D     +  C GTH  +T ++ L+ I+  + I  G+ RI  + G  A  ++  +
Sbjct: 736 VDISGYD-----TEACCGTHCDNTSQVGLIRIIKTNRISDGVVRIRFVAGDAAYKNMAME 790

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
              +  L     V    +   +E I+ +Y+KL    +K   ++
Sbjct: 791 KNLINDLCDSYSVLPEVLQPTLERIFTDYKKLTKQSSKMIGEI 833


>gi|152002522|dbj|BAF73546.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W]
          Length = 430

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 131/442 (29%), Positives = 216/442 (48%), Gaps = 22/442 (4%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFS G YFK+ AI  A++LLT  K F     +LYIT + +D++ ++ W  + G+  +
Sbjct: 1   MLGNFSIGNYFKKEAIHYAFELLTSPKWFAFPLEKLYITYFFQDQDTYQYWLDL-GVEKN 59

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG---SSEEGERYIEIWNLVFM 206
            +I +    NFW +   GP GPC+EIFFD+G+              E +R+IEIWN+VF 
Sbjct: 60  HLIPL--KSNFWQIGP-GPSGPCTEIFFDRGKTFDSRNKELIIQDLENDRFIEIWNIVFS 116

Query: 207 QFEQQNK---QERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           Q+    K   ++   LP  +IDTG GLER+A +LQ    N++ DLF  LI+A E++T +K
Sbjct: 117 QYNCDPKLPIEKYQELPSKNIDTGAGLERLACILQNTKTNFETDLFFPLIKALEKMTQIK 176

Query: 264 YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323
           Y G    + ++I DHL++  F I DG +  NE RGYVL++++RRA    + LG  +P + 
Sbjct: 177 YTGQE--SFKIITDHLKTLVFAINDGAVLTNEKRGYVLKKLLRRAANEGKKLGLDKPFLH 234

Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN 383
            L+P     M   Y EL   + +I + L  ++  F +TL          L+       L+
Sbjct: 235 QLVPPTVAMMKDFYKELCTNQEMIAKVLLQQENIFEQTLKTAEKTFLQHLTQ----NTLS 290

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G   FKLYDT+G+P D++ D    + +   D   F + L + ++ ++ +         ++
Sbjct: 291 GKNFFKLYDTYGIPEDLILDYAKKKNITT-DYQKFQELLHDHQNLSKQNQTSQTHMNKQE 349

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK-AIVQQGEIV 502
             F   +    ++FIGY        + +                +   ++         V
Sbjct: 350 EAF--LQFLTPSEFIGYTNFTCKTKVIKVFDKGIVLEKTPFYANMGGQIEDGGWIDNTKV 407

Query: 503 EEAVSGQKVEVVFDQTPFYAEA 524
            +       +++ +   F+   
Sbjct: 408 TKITKLPNGQILHEVQGFFVGD 429


>gi|325989605|ref|YP_004249304.1| Alanyl-tRNA synthetase [Mycoplasma suis KI3806]
 gi|323574690|emb|CBZ40346.1| Alanyl-tRNA synthetase [Mycoplasma suis]
          Length = 445

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 233/448 (52%), Gaps = 26/448 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + + ++ T++ +F  NGHE++P  SLIP   D + +F N+G+   K +F        Q  
Sbjct: 5   SPAKLKETWINYFSSNGHEVIPPHSLIPPEYDKSTLFVNAGLGAIKKLFIESSDKP-QMF 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T++QK VR      D+ ++   + H T+FEM+GNFS GGYFK  AI  A + L     +D
Sbjct: 64  TSIQKVVRTV----DITSIEEDSWHSTYFEMMGNFSIGGYFKREAISYAVEFLLSLLKID 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL IT+Y++D E+  +WK++ G     I+++    NFW + E GPCGPC+EI++D+GE
Sbjct: 120 KSRLVITIYEKDSESESIWKELLG-ENTPILKLG-KANFWEIGE-GPCGPCTEIYYDRGE 176

Query: 182 CIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  G          +RYIEIWN+VF QF      E   L + +IDTG GLER+ T+
Sbjct: 177 KYDKNNLGVELIKQGINNDRYIEIWNIVFSQF-WAKNGEYEELKRKNIDTGAGLERVITI 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----HRVIVDHLRSSSFLIADGIL 291
           ++E  N +    F  LI+  E+++G  Y   +  +      ++I DH+R+ + ++ +GIL
Sbjct: 236 IEEAENIFHSSCFSPLIKEVEKLSGKSYYLASEDSPLKAHFQIISDHIRTLTLIVGEGIL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMM--HLLPALCTEMGSAYPELIQAKLLIEE 349
           P+N+GRGYV+++++RR      +LG    L     LL      +   +  L + K  I++
Sbjct: 296 PSNKGRGYVVKKLLRRVATSLNILGVPSCLEALSSLLNISVELLSPLHSFLSEQKENIKK 355

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E + F K L+     +   + +   +     +  F L +  G P  +++ IL  + 
Sbjct: 356 VVLGEYQSFEKVLNNFYKKIFKEIENPENNLE---ERLFTLVEREGAPFALIEKILVEK- 411

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLG 437
                   FN+  E  +++++      G
Sbjct: 412 EINFSREKFNELYENHKNKSKNAKFSSG 439


>gi|145525685|ref|XP_001448659.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416214|emb|CAK81262.1| unnamed protein product [Paramecium tetraurelia]
          Length = 975

 Score =  302 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 176/813 (21%), Positives = 300/813 (36%), Gaps = 145/813 (17%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLD 78
              +    ++      + +  +G+  F+    TG+  P    +   Q CVR     NDLD
Sbjct: 142 CTAIDRYPVVARWRNDVDYVAAGIYCFQPFCVTGEMDPPANPLICPQFCVR----FNDLD 197

Query: 79  NVGRTNRHHTFFEMLGNFSFGGY------FKERAIQLAWDLLTKEFDLDQRRLYITVYDE 132
           N+G T RH++ F MLG  +F  Y      FKE  ++  +  LT+E +++           
Sbjct: 198 NIGLTGRHYSGFIMLGIQTFN-YPDKYVFFKEECVEFNYRWLTEELEINPDD-------- 248

Query: 133 DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE 192
                                IT  ++ W+    G  GP  E F                
Sbjct: 249 ---------------------ITFIEDVWAGG--GNLGPSVEYFV--------------- 270

Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE--------RMATVLQEKTNNY 244
                +E+ N+VFMQ++  +      LP   IDTG+GLE          A + Q+    Y
Sbjct: 271 ---NGLEVGNMVFMQYKYFHDGSYEELPIKIIDTGIGLELTFDVFAGAFAFLAQKLQVEY 327

Query: 245 DIDLFKHLIQASE-----------------------QVTGMKYEGNNIVNHRVIVDHLRS 281
             D++K     S                         V  +K E   + +  +I+DH R+
Sbjct: 328 SNDVWKAFGPYSCLLNVDEVENVDKTWEFISSQIGYDVQTIKKEIEQLKDMYIILDHTRT 387

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE-- 339
              ++ DG LP+N G G  +R I+RR     +   + + L M  L  L  E  +   +  
Sbjct: 388 VMMVVTDGSLPSNVGGGSNIRNIIRRVFAVLKKNNWWDKLGMDGLLQLFQEHKNDLAKLY 447

Query: 340 -LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
                    ++ ++ E ER+ KT D     +        K+  L+ D       THG+P 
Sbjct: 448 GPFGEYKSFDQIIKQEYERWAKTDDD--KKVKLEKLLKQKNNQLSIDDWIFAMSTHGIPA 505

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D +  I            +    L ++ +R       +   T              T  +
Sbjct: 506 DTISQISK-----LPIPGNLYAELADRAARITKAPEAILYNTV---------HLQETTNL 551

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
            Y   +  KF                     + +  I    +            V+ +Q+
Sbjct: 552 YYQTPKDGKF--------------------QAKIVTIFSNVQQQNLPN-----IVILNQS 586

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLTID 576
            FY   GGQ  D G     G R  + +VQK  + +                   ++  ID
Sbjct: 587 AFYPFGGGQDFDQGWLTIQGERHYVNNVQKVGKVVLHILEKPLPNAVDTYVGQDVLAEID 646

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R  L  +H+ATH++  A   +LG HV QNG+  +      D+TH  P++  + ++IE
Sbjct: 647 LERRSILRNHHTATHIVFAACRRVLGPHVWQNGAHKSVHNAHLDITHFAPLSKEQEQAIE 706

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALC 694
           + VN II     +    MN+ DA       L        + +RVV+++  D        C
Sbjct: 707 NEVNKIILSAKQINKGFMNKADAEKEYGFRLYQGGIVPGNELRVVNIDGID-----VEAC 761

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            GTH  ST E+  + I+    ++ G+ R+  + G +    L  + E + SL     +S+ 
Sbjct: 762 CGTHCDSTSEVGWVRILKTQKLQDGVVRLYYVAGVKTIEVLNSEGEMINSLVKLWSISKT 821

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
            +V    +I++E +  +  + + K +L    L 
Sbjct: 822 QLVEEGSKIFQEKKHYESAYNQLKAELIKSQLK 854


>gi|325973162|ref|YP_004250226.1| alanyl-tRNA synthetase [Mycoplasma suis str. Illinois]
 gi|323651764|gb|ADX97846.1| alanyl-tRNA synthetase [Mycoplasma suis str. Illinois]
          Length = 445

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 235/448 (52%), Gaps = 26/448 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + + ++ T++ +F  NGHE++P  SLIP   D + +F N+G+   K +F        Q  
Sbjct: 5   SPAKLKETWINYFSSNGHEVIPPHSLIPPEYDKSTLFVNAGLGAIKKLFIESSDKP-QMF 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T++QK VR      D+ ++   + H T+FEM+GNFS GGYFK  AI  A + L     +D
Sbjct: 64  TSIQKVVRTV----DITSIEEDSWHSTYFEMMGNFSIGGYFKREAIGYAVEFLLSLLKID 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL IT+Y++D E+  +WK++ G     I+++    NFW + E GPCGPC+EI++D+GE
Sbjct: 120 KNRLVITIYEKDSESESIWKELLG-ENTPILKLG-KANFWEIGE-GPCGPCTEIYYDRGE 176

Query: 182 CIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  G          +RYIEIWN+VF QF      E   L + +IDTG GLER+ T+
Sbjct: 177 KYDKNNLGVELIKQGINNDRYIEIWNIVFSQF-WAKNGEYEELKRKNIDTGAGLERVITI 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----HRVIVDHLRSSSFLIADGIL 291
           ++E  N +    F  LI+  E+++G  Y   +  +      ++I DH+R+ + ++ +GIL
Sbjct: 236 IEEAENIFHSSCFSPLIKEVEKLSGKSYYLASEDSPLKAHFQIISDHIRTLTLIVGEGIL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMM--HLLPALCTEMGSAYPELIQAKLLIEE 349
           P+N+GRGYV+++++RR      +LG +  L     LL      +   +  L + +  I+E
Sbjct: 296 PSNKGRGYVVKKLLRRVATSLNILGVSNCLEALSSLLDISVELLSPLHSFLSEQQKNIKE 355

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            + +E + F K L+     +   + +   +     +  F L +  G P  +++ IL  + 
Sbjct: 356 IVMAEYQSFEKVLNNFYKKIFKEIENPENNLE---ERLFTLVEREGAPFALIEKILVEK- 411

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLG 437
                   FN+  E  +++++      G
Sbjct: 412 EINFSREKFNELYENHKNKSKNAKFSSG 439


>gi|21225863|ref|NP_631642.1| alanyl tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|11228499|emb|CAC16521.1| putative alanyl tRNA synthetase [Streptomyces coelicolor A3(2)]
          Length = 404

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 128/407 (31%), Positives = 209/407 (51%), Gaps = 29/407 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +  TF+E+++  GH  +  S+L+P     ++FT++GM P      G+  P+ + +
Sbjct: 1   MDTEHVLRTFVEYYEDQGHRRITGSTLLPEPGDPVLFTSAGMHPLTPYLEGRPHPLGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG  + H T FEMLG +S G Y   R++  A  LLT+   +D
Sbjct: 61  VNVQRCLRT----TDLDEVG-DSTHLTVFEMLGTWSLGDYEGSRSLDWAHRLLTEGLGVD 115

Query: 122 QRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              L+ TVY        D E+ +LW++  G+  ++    T +DN+WS    GPCGP SEI
Sbjct: 116 PGLLHATVYGGGEQVGPDTESLRLWQE-RGVPVER----TVDDNWWSNGPVGPCGPDSEI 170

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G+  P   P      +R++E+WN V M+  + +      LP+ ++DTG+GLER+A 
Sbjct: 171 FLWSGDTPPRSTPT---GDDRWVEVWNHVMMRHRRLDDGRLVPLPQRNVDTGLGLERLAM 227

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ K++ ++ D+F+   +    +        +  + RV+ DHLRS+  ++ DG+ P+N 
Sbjct: 228 LLQGKSSVFECDVFEPWRRLLPVL-----WPLDEPSFRVVCDHLRSAVVIVGDGVRPSNT 282

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE-LIQAKLLIEETLRSE 354
           GRGYVLRR++RR +        +  L       +   +     +       L+   L  E
Sbjct: 283 GRGYVLRRLVRRLLTVLWRDDPSRGLGDLPDELITHTLDHFRQDGDPGLPGLVRRLLVEE 342

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           + RF + LDRG      VL+       L  +    L+DTHGLP +++
Sbjct: 343 ERRFRRLLDRGRN----VLARPRFRGPLGEEDFHYLHDTHGLPRELV 385


>gi|256075153|ref|XP_002573885.1| alanyl-tRNA synthetase [Schistosoma mansoni]
 gi|238659075|emb|CAZ30118.1| alanyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 1667

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 136/287 (47%), Gaps = 33/287 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK------P 56
           +VS +R  F+ FFQ + H ++  +S+ P       F N+GM  FK+IF  Q         
Sbjct: 521 SVSELRREFINFFQSHQHSVVAPASVFPKRHEGSYFINAGMNQFKSIFLNQSDNICSEFK 580

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +  T  Q C+R GG+H+DL++VG    HHT FEMLG++SFG Y+K+ A    W  LT+
Sbjct: 581 QLRRATNSQPCIRIGGRHDDLNDVGYDRHHHTMFEMLGSWSFGDYYKKEACSQVWKFLTE 640

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE--- 165
             +L    +YIT +          D+E   +W  + G+   K++      NFW   +   
Sbjct: 641 VLNLPTNAIYITYFGGDQKLGLPPDDETRDIWLNL-GVMDQKLMPFGIESNFWRANQFSG 699

Query: 166 TGPCGPCSEIFFDQ-----GECIPGGLPGSSEEGERYIEIWNLVFMQF----------EQ 210
            G CGP +E+  D      G+ +       +    + +E+WN VF+            + 
Sbjct: 700 GGLCGPSTEVHIDFKALCGGDQLDCARCLVNTSSPQVLELWNCVFITHRIIADNDVTEKH 759

Query: 211 QNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
                   L K  +DTGMGLER+A V+Q  T+NYD      L++   
Sbjct: 760 LKPDLLQPLTKSFVDTGMGLERLACVMQGLTSNYDSYEMNSLMEFIH 806



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 104/594 (17%), Positives = 177/594 (29%), Gaps = 103/594 (17%)

Query: 239  EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             K  N D DL                  +    +RV+VDH R+ +F ++DG+LP  +G  
Sbjct: 872  WKNFNMDNDLIDMW--------------HRDTAYRVLVDHSRALAFALSDGLLPGRQGLP 917

Query: 299  YVLRRIMRRAMCYARLLGYTEPLMMH--------------------LLPALCTEMG---- 334
              +R+++ RA   + L G    +                        L +    M     
Sbjct: 918  LKIRQLIHRAFRASVLTGLDTEITTSGKLKSLLGALVSEVTKRDVLSLKSFFNTMATIRG 977

Query: 335  -SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD- 392
             S           +E  +  E   F   L       +  L        L+ +   KL + 
Sbjct: 978  PSCRKSDALTPEQMESIINEEVTWFALRLFHMEKSFNRCLEECTDRRQLSAEQVTKLMNG 1037

Query: 393  --THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
               H +  D++    C  GL     I  N   ++ +         L S    +   +L  
Sbjct: 1038 DYGHHVSWDMICAQSCWAGLLPPLPIETNSPSDKNKPLLFRS-QKLNSNVISRQLHNLCV 1096

Query: 451  KYGATQFIG---------------YDLLRGSKF---MKEDRKVLCQKPPIDLTNGVSSIV 492
             +    F                 YD          +            I   +  +S V
Sbjct: 1097 PFTDDSFKYNCYRKSEPDLNATRQYDFPDCETKLLGLLAIGNKHTDYTLITKQSSSNSDV 1156

Query: 493  KAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT------- 544
             +++Q   +      +   +  +F++T F+   GGQ  DTG        LQ         
Sbjct: 1157 TSVIQNLCDASNNETANNLLGFIFEKTNFFTSRGGQDADTGFIHYPSKILQFQVIETTFV 1216

Query: 545  -----DVQKKAEGIFVHHAI----VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 +       I   H      +    L  + S VL ID + R  L  +H+  HL   
Sbjct: 1217 PDPTSNSSTNGWIIHWCHKPDNLFLSLNNLNFDQSFVLRIDKERRFNLMCSHTGQHLFTS 1276

Query: 596  AL------STILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL-------KSIEDNVNDI 642
            AL           S     G    P+            +           + +E     +
Sbjct: 1277 ALESLVLSRASNSSAFQHIGGTSHPNYFTLKAAIIGSASELMQEDLGDFTRQLEQKCQKL 1336

Query: 643  IAQNLPVVTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSS---------- 691
            I +N  +         AI           +Y+ +VR V +  E    +            
Sbjct: 1337 INENGFISIWNTELAHAIKVKQIRYFPWEEYSAKVRTVCITKEKHPFNDHELADFNSVIS 1396

Query: 692  -ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
              LCGGTH+    +++ + IV+    +  I+    I G  A+S     DE ++ 
Sbjct: 1397 AELCGGTHLFELSDLLDIAIVAVKGRQKTIKEFTCIFGHLAKSAHQCADELIQE 1450


>gi|256783097|ref|ZP_05521528.1| alanyl tRNA synthetase [Streptomyces lividans TK24]
 gi|289766980|ref|ZP_06526358.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289697179|gb|EFD64608.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 404

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 128/407 (31%), Positives = 209/407 (51%), Gaps = 29/407 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +  TF+E+++  GH  +  S+L+P     ++FT++GM P      G+  P+ + +
Sbjct: 1   MDTEHVLRTFVEYYEDQGHRRITGSTLLPEPGDPVLFTSAGMHPLTPYLEGRPHPLGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG  + H T FEMLG +S G Y   R++  A  LLT+   +D
Sbjct: 61  VNVQRCLRT----TDLDEVG-DSTHLTVFEMLGTWSLGDYEGSRSLDWAHRLLTEGLGVD 115

Query: 122 QRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              L+ TVY        D E+ +LW++  G+  ++    T +DN+WS    GPCGP SEI
Sbjct: 116 PGLLHATVYGGGEQVGPDTESLRLWQE-RGVPVER----TVDDNWWSNGPVGPCGPDSEI 170

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G+  P   P      +R++E+WN V M+  + +      LP+ ++DTG+GLER+A 
Sbjct: 171 FLWSGDTPPRSTPT---GDDRWVEVWNHVMMRHRRLDDGRLVPLPQRNVDTGLGLERLAM 227

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ K++ ++ D+F+   +    +        +  + RV+ DHLRS+  ++ DG+ P+N 
Sbjct: 228 LLQGKSSVFECDVFEPWRRLLPVL-----WPLDEPSFRVVCDHLRSAVVVVGDGVRPSNT 282

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE-LIQAKLLIEETLRSE 354
           GRGYVLRR++RR +        +  L       +   +     +       L+   L  E
Sbjct: 283 GRGYVLRRLVRRLLTVLWRDDPSRGLGDLPDELITHTLDHFRQDGDPGLPGLVRRLLVEE 342

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           + RF + LDRG      VL+       L  +    L+DTHGLP +++
Sbjct: 343 ERRFRRLLDRGRN----VLARPRFRGPLGEEDFHYLHDTHGLPRELV 385


>gi|145492553|ref|XP_001432274.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399384|emb|CAK64877.1| unnamed protein product [Paramecium tetraurelia]
          Length = 954

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 166/822 (20%), Positives = 294/822 (35%), Gaps = 159/822 (19%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLD 78
              +    ++      + +  +G+  F+    TG+  P    +   Q CVR     NDLD
Sbjct: 117 CTAIDRYPVVARWRNDVDYVAAGIYCFQPFCVTGEMDPPANPLICPQFCVR----FNDLD 172

Query: 79  NVGRTNRHHTFFEMLGNFSFGGY------FKERAIQLAWDLLTKEFDLDQRRLYITVYDE 132
           N+G T RH++ F MLG  +F  Y      FKE  ++  +  LT+E +++           
Sbjct: 173 NIGLTGRHYSGFIMLGIQTFN-YPDKYVFFKEECVEFNYRWLTEELEINPDD-------- 223

Query: 133 DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE 192
                                IT  ++ W+    G  GP  E F                
Sbjct: 224 ---------------------ITFIEDVWAGG--GNLGPSVEYFV--------------- 245

Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
                +E+ N+VFMQ++  +      LP   IDTG+GLER+  ++     +Y  D+F   
Sbjct: 246 ---NGLEVGNMVFMQYKYFHDGSYEELPIKIIDTGIGLERIPWLVNGTPTSY-FDVFAGA 301

Query: 253 IQASEQVTGMKYEGNNIVN----------------------------------------- 271
                Q   ++Y  +                                             
Sbjct: 302 FAFLAQKLQVEYSNDVWKAFGPYSCLLNVDEVENVDKTWEFISSQIGYDVQTIKKEIEQL 361

Query: 272 --HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL 329
               +I+DH R+   ++ DG LP+N G G  +++  ++++C        E L+  +    
Sbjct: 362 KDMYIILDHTRTVMMVVTDGSLPSNVGGGSNIQKYHQKSICSVEE----EQLVGQIRNGW 417

Query: 330 CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFK 389
                +            ++ ++ E ER+ KT D     +        ++  L+ D    
Sbjct: 418 IINDLAKLYGPFGEYKSFDQIIKQEYERWAKTDDD--KKVKLEKLLKQRNNQLSIDDWIF 475

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
              THG+P D +  I            +    L ++ +R       +   T         
Sbjct: 476 AMSTHGIPADTISQISK-----LPIPGNLYAELADRAARITKAPEAILYNTV-------- 522

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
                T  + Y   +  KF                     + +  I    +         
Sbjct: 523 -HLQETTNLYYQTPKDGKF--------------------QAKIVTIFSNVQQQNLPN--- 558

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRT 567
              V+ +Q+ FY   GGQ  D G     G R  + +VQK  + +                
Sbjct: 559 --IVILNQSAFYPFGGGQDFDQGWLTIQGERHFVNNVQKVGKVVLHILEKPLPNAVDTYV 616

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +   ID + R  L  +H+ATH++  A   +LG HV QNG+  +      D+TH  P+
Sbjct: 617 GQEVQAEIDLERRSILRNHHTATHIVFAACRRVLGPHVWQNGAHKSVHNAHLDITHFAPL 676

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYED 685
           +  + ++IE+ VN II     +    MN+ DA       L        + +RVV+++  D
Sbjct: 677 SKEQEQAIENEVNKIILSAKQINKGFMNKADAEKEYGFRLYQGGIVPGNELRVVNIDGID 736

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   C GTH  ST E+  + I+    ++ G+ R+  + G +    L  + E + SL
Sbjct: 737 -----VEACCGTHCDSTSEVGWVRILKTQKLQDGVVRLYYVAGVKTIEVLNSEGEMINSL 791

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
                +S+  +V    +I++E +  +  + + K +L    L 
Sbjct: 792 VKLWSISKTQLVEEGSKIFQEKKHYESAYNQLKAELIKSQLK 833


>gi|76664719|emb|CAJ17799.1| alanyl-tRNA synthetase [Candidatus Phytoplasma solani]
          Length = 259

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 112/261 (42%), Positives = 160/261 (61%), Gaps = 14/261 (5%)

Query: 75  NDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDE 132
           ND+ NVG T+RHHTFFEMLGNFS G YFK+ AIQ A++LLT  K F     +LYIT Y  
Sbjct: 2   NDIQNVGNTSRHHTFFEMLGNFSIGDYFKKEAIQYAYELLTSPKWFSFPVEKLYITYYPT 61

Query: 133 DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG---GLPG 189
           D++A+K W +  G+  + +I +    NFW +   GP GPC+EIFFD+GE        L  
Sbjct: 62  DQDAYKHWLE-VGIPKEHLISL--KSNFWQIGP-GPSGPCTEIFFDRGEKYDSRSQELII 117

Query: 190 SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
              E +R+IEIWN+VF Q+        ++   LP  +IDTG GLER+A++LQ+  NN++ 
Sbjct: 118 KDLENDRFIEIWNIVFSQYNCDPHPLIEQYPELPSKNIDTGSGLERLASILQKTDNNFET 177

Query: 247 DLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
           DLF  LIQ  + +    Y G    + ++I DH+++  F I DG    NE RGYVL++I++
Sbjct: 178 DLFFSLIQKIQHIAQTPYHGQK--SFKIIADHVKTLVFAINDGATLTNEKRGYVLKKILK 235

Query: 307 RAMCYARLLGYTEPLMMHLLP 327
           R++   + L   +P +  L+P
Sbjct: 236 RSVNQGKKLNLDQPFLYQLVP 256


>gi|297197300|ref|ZP_06914697.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|297146671|gb|EFH28278.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 389

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 133/413 (32%), Positives = 210/413 (50%), Gaps = 31/413 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M    ++R  F +F+++ GH L+  S+L+P     ++FT SGM P      G+  P  + 
Sbjct: 1   MDTDRTVR-VFTDFYRERGHHLITGSTLLPPPGDPVLFTTSGMHPLTPFLEGRPHPRGRR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +  VQ+C+R      DLD VG  + H T FEMLG++S G Y   ++++  ++LL   F +
Sbjct: 60  LVNVQRCLRT----TDLDEVG-DSTHLTVFEMLGSWSLGDYGHPQSLRWGYELLRDGFGV 114

Query: 121 DQRRLYITVYDED------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              +L++TV+  D       E+ + W+++  +  +    +T  DN+WS    GPCGP SE
Sbjct: 115 PHEQLHVTVFGGDGQVGPDLESLRTWEELE-VPVE----LTREDNWWSNGPVGPCGPDSE 169

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IF   G   P G P +     R++EIWN V M++ +        L +  IDTGMGLER+ 
Sbjct: 170 IFVWTGGTPPRGTPTT---DPRWVEIWNHVVMRYRRHEDGSLQPLRRPGIDTGMGLERLV 226

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           TVLQ + + +D DLF+   +    +        +  + R++ DHLRS+  +I DG+ P+N
Sbjct: 227 TVLQGRDSVHDTDLFEPWRRLLRPL-----WELDEPSLRLVCDHLRSAVVVIGDGVRPSN 281

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GRGYVLRRI+RR +   R    +  L    +  +   +            L+ + L  E
Sbjct: 282 TGRGYVLRRIVRRLLTTLRRDDPSRTLCDLPVELVQYTLEHFRQSC--GTDLVRDVLVEE 339

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           + RF    DR L     +LS       L+G+    L+DTHGLP D++  +   
Sbjct: 340 ERRF----DRLLERGRRLLSGPRYRGPLSGEDYDYLHDTHGLPRDLVDGLRPE 388


>gi|118374997|ref|XP_001020686.1| alanyl-tRNA synthetase family protein [Tetrahymena thermophila]
 gi|89302453|gb|EAS00441.1| alanyl-tRNA synthetase family protein [Tetrahymena thermophila
           SB210]
          Length = 1049

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 158/851 (18%), Positives = 291/851 (34%), Gaps = 179/851 (21%)

Query: 16  QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKH 74
            +     +    ++      + F  +G+  F+    TG+ +P    +   Q CVR     
Sbjct: 189 ARKPCTAIKRYPVVARWRNDVDFVAAGIYCFQPYCMTGELQPPANPLIQPQFCVR----F 244

Query: 75  NDLDNVGRTNRHHTFFEMLGNFSF---GG----YFKERAIQLAWDLLTKEFDLDQRRLYI 127
           NDLDN+G T RH++ F M+G  SF   G     +F E  ++   + L     + +     
Sbjct: 245 NDLDNIGLTGRHYSGFIMIGIQSFCYPGTEDKTFFSEECVEFNLNWLIDGLKIPKD---- 300

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
                                     IT  ++ WS    G  G C E F           
Sbjct: 301 -------------------------EITLIEDIWSGG--GNLGSCVEYFV---------- 323

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD-- 245
                   + +E+ N+VF  ++     +   L    ID G+G+ER+  ++     +Y   
Sbjct: 324 --------KGLEVGNMVFTMYKYYPDGKLEDLEIKVIDVGIGMERIPWLINGTPTSYMDV 375

Query: 246 -----------------IDLFKHLIQASEQV-----------------------TGMKYE 265
                             +++K +   +  +                          K  
Sbjct: 376 FDTSYKYLQEKLQVETSTEIWKQIGPYTCHLNADESDDMEKTWQMVASSIGKTVQECKQA 435

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
              + +  +++DH R++  LI DG LP+N G G  +R I+RR     +  G        L
Sbjct: 436 ITPVKDLYIVLDHTRAALVLIQDGALPSNTGGGSNIRNIIRRVFAIMKKNG----WWDKL 491

Query: 326 LPALCTEMGSAYPELIQAKLLIEE-------------TLRSEDERFGKTLDRGLVLLDGV 372
                 +M +        +  +E+              +  E E++  T          +
Sbjct: 492 GKTKEEQMKNFLTLFDMHQQDLEKLYGKFPEYKSFGSIIEIEYEKWSSTDK---AQQKKI 548

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           +    K + L  +      ++ GL  D + ++            +    +E ++ +    
Sbjct: 549 VDSFNKKKALTLNDWIVAIESWGLSPDTITEVTG-----LPQPDNLYNEMELRKMKLTKA 603

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
              +   T              T  + Y+      F                     + +
Sbjct: 604 PEQILYQTAN---------IQETVHLFYEHQNKFDF--------------------EAKI 634

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
             I    + VE      +  V+ DQ+ FY  +GGQ  D G    DG +  + DV K  + 
Sbjct: 635 VEIFADYKNVEN-----RNIVILDQSCFYPTSGGQQNDIGVMTVDGQKYNVVDVIKVGKC 689

Query: 553 IFVHHAIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           +                    +   +D   R+ L  +H++TH++  A   +LG HV QNG
Sbjct: 690 VLHILDRSLPNPDNSHYIGQKVHAVVDENRRKILRNHHTSTHIVFAACRQVLGPHVWQNG 749

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +  T D    D+TH   +T  +   IE   N I+  +  +    +N+ +A       L  
Sbjct: 750 AKKTVDMAHLDITHYASLTEEQEMEIEKIANTIVFSSKNINKEFVNKAEAEKEHGFRLYQ 809

Query: 670 --TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                 D +RVV++E  D        C GTH  +T E+ ++ I+  + I  GI R+  + 
Sbjct: 810 GGVVPGDTLRVVNIEGTD-----VEACCGTHCDNTSEVGIIRILKTNRISDGIIRLYFVA 864

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV-------EEIWEEYRKLQLIHAKRKLQ 780
           G+R+   L  Q + L  L +  KV + ++V           +  E ++         +++
Sbjct: 865 GERSLQKLSTQTKVLVDLQNIFKVKESDLVSTSLKFFTERNKFIERHKSATQKVLNLQME 924

Query: 781 LNVEDLSCHKI 791
           L +       I
Sbjct: 925 LFLAKDKYKNI 935


>gi|13186176|emb|CAC33486.1| alanyl-tRNA synthetase [Legionella pneumophila]
          Length = 147

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 85/147 (57%), Positives = 104/147 (70%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MKSSEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   + 
Sbjct: 61  ATAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSA 148
             RL++TVY ED EA  +W K   +S 
Sbjct: 121 AERLWVTVYKEDLEAEDIWLKEMKVSP 147


>gi|315506404|ref|YP_004085291.1| alanine--tRNA ligase [Micromonospora sp. L5]
 gi|315413023|gb|ADU11140.1| Alanine--tRNA ligase [Micromonospora sp. L5]
          Length = 397

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 131/417 (31%), Positives = 197/417 (47%), Gaps = 33/417 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I  TFL+ +Q++ H   P SSL+P     ++FT SGM P      G+  P  + +
Sbjct: 1   MTPDEITRTFLDHYQRHDHRRAPESSLVPPPGDPVLFTTSGMHPLTPYLLGRPHPGGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG  + H T F+MLG++S G Y    +++  ++LLT  F + 
Sbjct: 61  ANVQRCLRT----TDLDEVG-DSTHLTVFQMLGSWSLGDYDIATSLRWGFELLTDGFGIP 115

Query: 122 QRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             +L+ TV+        D+ A   W  + G+  + +      DN+WS   TGPCGP SEI
Sbjct: 116 AGKLHATVFGGDDRLGPDDTARDTWTGL-GVPVEAL----GEDNWWSNGPTGPCGPDSEI 170

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G+  P G P +     R++E+WN V M++ +        LP  SIDTGMGLER+  
Sbjct: 171 FVWTGDGPPTGTPST---DVRWVEVWNHVQMRYHRHPDGRLTPLPHPSIDTGMGLERLEM 227

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VL+   + +  D  +  +        ++       + RV+ DHLRS+  ++ DG+ P N 
Sbjct: 228 VLRGDRSVFTGDGLRPWVDVVRDRWDLR-----GEDLRVVSDHLRSAVVVLGDGVRPGNT 282

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI-----EET 350
           GRGYVLRR++RRA+           L           +         +   +       T
Sbjct: 283 GRGYVLRRLLRRALTVLWRDDPARTLDEMPPRVYADTLRRFRQLPDPSMRPVDVGSLHTT 342

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           L  E+ RF   L RG  L+D V +       L       L+DTHGLP D++  +L  
Sbjct: 343 LVDEERRFRGLLRRGRPLVDRVRAR----GPLTERDYHWLHDTHGLPRDLVDGLLAE 395


>gi|253741622|gb|EES98488.1| Alanyl-tRNA synthetase [Giardia intestinalis ATCC 50581]
          Length = 969

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 167/832 (20%), Positives = 293/832 (35%), Gaps = 158/832 (18%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLD 78
           H ++P   ++        FT +G+  ++    TG+ +P    +   Q C+R     NDLD
Sbjct: 106 HTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPANPLIQPQLCLR----FNDLD 161

Query: 79  NVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDED 133
           ++G + RH++ F MLG   F       YFKE  I+   +                     
Sbjct: 162 SIGLSGRHYSGFTMLGIQVFNTSAKYVYFKEEIIRFNLE--------------------- 200

Query: 134 EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE 193
                 W +   +  D++  I      W+    G  GPC E F                 
Sbjct: 201 ------WLQTMNIDLDEVTLIAD---VWAGG--GNLGPCVEYFM---------------- 233

Query: 194 GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY--------- 244
               +E+ N+VFM+F+         LP   +D G+GLER+  +L     +Y         
Sbjct: 234 --HGLEVGNMVFMEFKAFANGTIEPLPVQVVDVGIGLERIPWLLNRSVTSYITAFPTALK 291

Query: 245 -------------DIDLFKHLIQASEQVT-----------------------GMKYEGNN 268
                          D+++   + S  +                         +      
Sbjct: 292 HMSQLIGITTETITGDVWRRFGRYSCLLNIDEVSDISQVWSLIKERTGLTTEEITNVIEP 351

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328
           +    +++DHLRS    I DG LP+N G G  LR ++RR        G+ + +       
Sbjct: 352 VRCMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVFHILTNRGWWDAIGGVDGLC 411

Query: 329 LCTEMGSAYPELIQ------AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
              +      E +           +   L  E  R+  T       ++ ++        L
Sbjct: 412 QIIDCHRQDLEEVHGAGSFPPFKPLRAVLELEYSRWTTTDKDARDKVEKLMKK--GKGQL 469

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           + D    +  T GL  D + ++        +      Q  +     A A      S    
Sbjct: 470 SIDDWVTIVTTFGLNADQVSELTGIPVPDNLYSRVAEQQEKNAIKVAAAQLYDTVS---- 525

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
                       T  + Y    G K  K                   + V       E  
Sbjct: 526 ---------LPPTDCVYYTKPYGEKLCK----------------LADAKVVGTFINMEE- 559

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHH 557
               S  +  V+ D+T FY  +GGQ  DTG        G  I   + DV++    +    
Sbjct: 560 ---KSKGRNLVILDKTVFYPTSGGQQHDTGVLRFILDNGKMITHDVVDVKRVGHCVVHEL 616

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                 ++     + + ID   R QL  +H+A H++H   + +LG HV Q G+  T +  
Sbjct: 617 DTPINDLITLGTCVSMEIDSARRHQLMCHHTAAHVIHATANKVLGPHVWQAGAKKTTEVA 676

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDR 675
             D+TH + +T  E ++IE   N +I  N+P+    + + +A      +L          
Sbjct: 677 TLDITHYRSLTFEEERAIEREANRMIRDNVPIRKHQLPKNEAEKKYGFSLYQGGVVPGST 736

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR V +   D     +  C GTH+ +TG+I ++ I+  + I  G+ R+  + G++A    
Sbjct: 737 VRCVDIVGHD-----TEACCGTHLDNTGKIGMIRIIKSTRISDGVVRLTFVAGEKALDFT 791

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
             Q E L +      V Q  +V   ++ +   ++L+    + + +L   +L+
Sbjct: 792 DTQSEILHTQMDRWGVDQAGIVKTGDKFFTAMKRLEGTTMQLRNELLNSNLN 843


>gi|153214926|ref|ZP_01949709.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124114999|gb|EAY33819.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 149

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 85/142 (59%), Positives = 103/142 (72%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKI 143
           + RL +TVY+ D+EAF +W K 
Sbjct: 123 KERLLVTVYETDDEAFDIWNKK 144


>gi|239943365|ref|ZP_04695302.1| putative alanyl-tRNA synthetase [Streptomyces roseosporus NRRL
           15998]
 gi|239989818|ref|ZP_04710482.1| putative alanyl-tRNA synthetase [Streptomyces roseosporus NRRL
           11379]
          Length = 388

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 128/412 (31%), Positives = 198/412 (48%), Gaps = 30/412 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I  TF+E++++ GH  +  S+L+P     ++FT SGM P      G+  P+ + +
Sbjct: 1   MRTDHIIRTFVEYYEERGHRRITGSTLLPPPGDPVLFTTSGMHPLTPYLEGRPHPLGKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG    H T FEMLG +S G Y    ++   + LLT+   +D
Sbjct: 61  VNVQRCLRT----TDLDEVG-DATHLTVFEMLGTWSLGDYGGPLSLDWGYGLLTEGLGID 115

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              L+ T +  D+       + +LW+ + G+  +    +T  DN+WS    GPCGP SEI
Sbjct: 116 PGLLHATAFAGDDRTGPDTASAELWQGL-GVPVE----LTVEDNWWSNGPVGPCGPDSEI 170

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           FF  G+   G    +    +R++E+WN V M   +        LP+ ++DTG+GLER+A 
Sbjct: 171 FFWSGD---GPPRSTPIRDDRWVEVWNHVTMTHRRHGDGSLVPLPQRNVDTGLGLERLAA 227

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ K + +  D+F                       R+I DHLRS   L+ DG+ P+N 
Sbjct: 228 LLQGKQSVFACDVFAPWRHLV-----PPLWSLEEPACRLISDHLRSVVVLLGDGVRPSNT 282

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RR +        +  L       +   +   + +   A +L    L  E+
Sbjct: 283 GRGYVLRRLVRRVLTVLWREDASRTLGDLPEDLVHHTLDHFHQDARPADVL--RHLLDEE 340

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            RFG+ L RG      VL+       L  +    L+DTHGLP D++  +   
Sbjct: 341 HRFGRLLTRGR----SVLARPRFRGPLAEEDFHYLHDTHGLPRDLVTSLREE 388


>gi|291446832|ref|ZP_06586222.1| alanyl tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|291349779|gb|EFE76683.1| alanyl tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 408

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 128/412 (31%), Positives = 198/412 (48%), Gaps = 30/412 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I  TF+E++++ GH  +  S+L+P     ++FT SGM P      G+  P+ + +
Sbjct: 21  MRTDHIIRTFVEYYEERGHRRITGSTLLPPPGDPVLFTTSGMHPLTPYLEGRPHPLGKRL 80

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG    H T FEMLG +S G Y    ++   + LLT+   +D
Sbjct: 81  VNVQRCLRT----TDLDEVG-DATHLTVFEMLGTWSLGDYGGPLSLDWGYGLLTEGLGID 135

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              L+ T +  D+       + +LW+ + G+  +    +T  DN+WS    GPCGP SEI
Sbjct: 136 PGLLHATAFAGDDRTGPDTASAELWQGL-GVPVE----LTVEDNWWSNGPVGPCGPDSEI 190

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           FF  G+   G    +    +R++E+WN V M   +        LP+ ++DTG+GLER+A 
Sbjct: 191 FFWSGD---GPPRSTPIRDDRWVEVWNHVTMTHRRHGDGSLVPLPQRNVDTGLGLERLAA 247

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ K + +  D+F                       R+I DHLRS   L+ DG+ P+N 
Sbjct: 248 LLQGKQSVFACDVFAPWRHLV-----PPLWSLEEPACRLISDHLRSVVVLLGDGVRPSNT 302

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RR +        +  L       +   +   + +   A +L    L  E+
Sbjct: 303 GRGYVLRRLVRRVLTVLWREDASRTLGDLPEDLVHHTLDHFHQDARPADVL--RHLLDEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            RFG+ L RG      VL+       L  +    L+DTHGLP D++  +   
Sbjct: 361 HRFGRLLTRGR----SVLARPRFRGPLAEEDFHYLHDTHGLPRDLVTSLREE 408


>gi|213022106|ref|ZP_03336553.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 147

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 85/143 (59%), Positives = 109/143 (76%), Gaps = 2/143 (1%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKK 142
           L + RL++TVY+ D+EA+++W+K
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEK 145


>gi|302867187|ref|YP_003835824.1| alanine--tRNA ligase [Micromonospora aurantiaca ATCC 27029]
 gi|302570046|gb|ADL46248.1| Alanine--tRNA ligase [Micromonospora aurantiaca ATCC 27029]
          Length = 397

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 131/417 (31%), Positives = 196/417 (47%), Gaps = 33/417 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I  TFL+ +Q++ H   P SSL+P     ++FT SGM P      G+  P  + +
Sbjct: 1   MTPDEITRTFLDHYQRHDHRRAPESSLVPPPGDPVLFTTSGMHPLTPYLLGRPHPGGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG  + H T F+MLG++S G Y    +++  ++LLT  F + 
Sbjct: 61  ANVQRCLRT----TDLDEVG-DSTHLTVFQMLGSWSLGDYDIATSLRWGFELLTDGFGIP 115

Query: 122 QRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             +L+ TV+        D+ A   W  + G+  + +      DN+WS   TGPCGP SEI
Sbjct: 116 AGKLHATVFGGDDRLGPDDTARDTWTGL-GVPVEAL----GEDNWWSNGPTGPCGPDSEI 170

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G+  P G P +     R++E+WN V M++ +        LP  SIDTGMGLER+  
Sbjct: 171 FVWTGDGPPTGTPSTDA---RWVEVWNHVQMRYHRHPDGRLTPLPHSSIDTGMGLERLEM 227

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VL+   + +  D  +  +        ++         RV+ DHLRS+  ++ DG+ P N 
Sbjct: 228 VLRGDRSVFTGDGLRPWVDVVRDRWDLR-----GEELRVVSDHLRSAVVVLGDGVRPGNT 282

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI-----EET 350
           GRGYVLRR++RRA+           L           +         +   +       T
Sbjct: 283 GRGYVLRRLLRRALTVPWRDDPARTLDEMPPQVYADTLRRFRQVPDPSTRPVDVGSLHAT 342

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           L  E+ RF   L RG  L+D V +       L       L+DTHGLP D++  +L  
Sbjct: 343 LVDEERRFRGLLRRGRPLVDRVRAR----GPLTERDYHWLHDTHGLPRDLVDGLLAE 395


>gi|259015939|gb|ACV89252.1| alanyl-tRNA synthetase [Heliothis virescens]
          Length = 232

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 91/234 (38%), Positives = 130/234 (55%), Gaps = 19/234 (8%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEA 136
            HHTFFEM+GN+SFG YFK+     AW+LLT+ + L   RLY+T +        + D E 
Sbjct: 1   YHHTFFEMMGNWSFGDYFKKEICGWAWELLTEVYKLSGDRLYVTYFGGDASSGLEPDLEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
            ++W K+ G+    I+  +  DNFW M ETGPCGPCSE+ +D+           + +   
Sbjct: 61  KEIWLKL-GVPESHILPGSMKDNFWEMGETGPCGPCSELHYDRI-GGRDAAHLVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF ++      +LPK  ID G+GLER+ +V+Q K  NYD D F  + +A 
Sbjct: 119 VLEIWNLVFIQFNRETDGSLKLLPKKHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKAI 178

Query: 257 E---------QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           E            G        + +RV+ DH R+ +  ++DG  P N GRGYV+
Sbjct: 179 EIGTGARPYSGKVGSDDVDGIDMAYRVLADHARTLTIALSDGGCPDNTGRGYVV 232


>gi|259015949|gb|ACV89257.1| alanyl-tRNA synthetase [Austroneurorthus brunneipennis]
          Length = 231

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 95/233 (40%), Positives = 134/233 (57%), Gaps = 19/233 (8%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEA 136
            HHTFFEMLGN+SFG YFK      AW+LLT+ F L   +LY+T +        + D+E 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKREICTWAWELLTQVFKLPPDQLYVTYFGGHKESGLEPDDEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
             +W  + G+    +I  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  RNIWIGL-GVPETHVIPGSMKDNFWEMGETGPCGPCSELHFDRIGN-REAAHLVNMDDPN 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF +++     +LPK  ID G+GLER+ +V+Q+K  NYD DLF+ L  A 
Sbjct: 119 VLEIWNLVFIQFNRESDASLKLLPKKHIDCGLGLERLVSVIQQKPANYDTDLFQPLFAAI 178

Query: 257 EQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           ++ TG +    N          + +RV+ DH R+ +  ++DG  P N GRGYV
Sbjct: 179 QKGTGAREYRGNVGDDDQDGIDMAYRVLADHARTLTIALSDGGRPDNTGRGYV 231


>gi|89266537|gb|ABD65560.1| alanyl-tRNA synthetase-like [Ictalurus punctatus]
          Length = 240

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 102/242 (42%), Positives = 148/242 (61%), Gaps = 19/242 (7%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAF 137
           HHTFFEMLG++SFG YFK+ A ++A +LLT+EF +   RLY T +        + D E  
Sbjct: 1   HHTFFEMLGSWSFGDYFKQLACKMALELLTQEFGIPLERLYFTYFGGHAEAGLECDNECK 60

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197
           ++W  + G++ ++I+     DNFW M +TGPCGPCSEI +D+           + +    
Sbjct: 61  QIWLDL-GVAEERILPGNMKDNFWEMGDTGPCGPCSEIHYDRI-GGRDASHLVNMDDPNV 118

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVF+QF ++++ E   LPK SIDTGMGLER+ +VLQ   +NYD DLF    +A +
Sbjct: 119 LEIWNLVFIQFNRESETELKPLPKKSIDTGMGLERLVSVLQNTMSNYDTDLFIPYFEAIQ 178

Query: 258 Q---------VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +           G + +    + +RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA
Sbjct: 179 KGTGARLYTGKVGSEDQDGIDMAYRVLADHARTITIALSDGGRPDNTGRGYVLRRILRRA 238

Query: 309 MC 310
           + 
Sbjct: 239 VR 240


>gi|326777472|ref|ZP_08236737.1| Alanine--tRNA ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326657805|gb|EGE42651.1| Alanine--tRNA ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 388

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 122/412 (29%), Positives = 204/412 (49%), Gaps = 30/412 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                + +TF+E++++ GH  +  S+L+P +   ++FT SGM P      G+  P+ + +
Sbjct: 1   MRTDQLVSTFVEYYEERGHRRITGSTLLPPDGDPVLFTTSGMHPLTPYLEGRPHPLGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG    H T FEMLG +S G Y   R++   + LLT+   +D
Sbjct: 61  VNVQRCLRT----TDLDEVG-DATHLTVFEMLGTWSLGDYGGPRSLDWGYGLLTEGLGVD 115

Query: 122 QRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              LY T +        D  + +LW+ + G+  +    +T  DN+W     GPCGP SEI
Sbjct: 116 PGLLYATAFGGDGRTGPDTASVELWQGL-GVPVE----LTVEDNWWPNDSAGPCGPDSEI 170

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   GE   G    +    +R++E+WN V M   + +      LP+ ++DTG+GLER+A+
Sbjct: 171 FLWTGE---GPPRSTPTRDDRWVEVWNHVTMTHRRLDDGSLVPLPRRNVDTGLGLERLAS 227

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ +++ +  D+F    +             +  + R++ DHLRS+  ++ DG+ PAN 
Sbjct: 228 LLQGESSVFACDVFDPWRRLVPAR-----WPLDEPSLRLVCDHLRSAVVVLGDGVRPANT 282

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RR +        +  +    +  +   +     +L      +   L  E+
Sbjct: 283 GRGYVLRRLVRRVLTVLWRDDPSRGVGDLPVELVEHTLDHFRQDLR--PDDVLRMLIEEE 340

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            RF   L+RG      VL+       L+ +    L+DTHGLP +++  +   
Sbjct: 341 HRFRGLLERGRG----VLAKPRFRGTLSEEDLHYLHDTHGLPRELVLSLREE 388


>gi|259015933|gb|ACV89249.1| alanyl-tRNA synthetase [Kempynus sp. BMW-2009]
          Length = 226

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/228 (38%), Positives = 127/228 (55%), Gaps = 19/228 (8%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEA 136
            HHTFFEMLGN+SFG YFK+     AW+ LT+ F L   +LY+T +        + DEE 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKQEICTWAWEFLTEVFHLPPDQLYVTYFGGHPASGLEPDEEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
             +W K+ G+    ++  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  KNIWIKL-GVPESHVLPGSMKDNFWEMGETGPCGPCSELHFDRIGNRD-VPHLVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF +++     +LPK  ID G+G ER+ +V+Q K  NYD DLF  L  A 
Sbjct: 119 VLEIWNLVFIQFNRESDSSLKLLPKKHIDCGLGFERLVSVIQGKRANYDTDLFMPLFAAI 178

Query: 257 EQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANE 295
           ++ TG++               + +RV+ DH R+ +  ++DG  P N 
Sbjct: 179 QKGTGIREYSGQVGDADSDGIDMAYRVLADHARTLTISLSDGGRPDNT 226


>gi|182436874|ref|YP_001824593.1| putative alanyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465390|dbj|BAG19910.1| putative alanyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 388

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 122/412 (29%), Positives = 204/412 (49%), Gaps = 30/412 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                + +TF+E++++ GH  +  S+L+P +   ++FT SGM P      G+  P+ + +
Sbjct: 1   MRTDQLVSTFVEYYEERGHRRITGSTLLPPDGDPVLFTTSGMHPLTPYLEGRPHPLGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG    H T FEMLG +S G Y   R++   + LLT+   +D
Sbjct: 61  VNVQRCLRT----TDLDEVG-DATHLTVFEMLGTWSLGDYGGPRSLDWGYGLLTEGLGVD 115

Query: 122 QRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              LY T +        D  + +LW+ + G+  +    +T  DN+W     GPCGP SEI
Sbjct: 116 PGLLYATAFGGDGRTGPDTASVELWQGL-GVPVE----LTVEDNWWPNDSAGPCGPDSEI 170

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   GE   G    +    +R++E+WN V M   + +      LP+ ++DTG+GLER+A+
Sbjct: 171 FLWTGE---GPPRSTPTRDDRWVEVWNHVTMTHRRLDDGSLVPLPRRNVDTGLGLERLAS 227

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ +++ +  D+F    +             +  + R++ DHLRS+  ++ DG+ PAN 
Sbjct: 228 LLQGESSVFACDVFDPWRRLVPAR-----WPLDEPSLRLVCDHLRSAVVVLGDGVRPANT 282

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RR +        +  +    +  +   +     +L      +   L  E+
Sbjct: 283 GRGYVLRRLVRRVLTVLWRDDPSRGVGDLPVELVEHTLDHFRQDLR--PDDVLRMLIEEE 340

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            RF   L+RG      VL+       L+ +    L+DTHGLP +++  +   
Sbjct: 341 HRFRGLLERGRG----VLAKPRFRGTLSEEDLRYLHDTHGLPRELVLSLREE 388


>gi|14041674|emb|CAC38773.1| alanyl-t-RNA synthetase [Rhizobium tropici]
          Length = 232

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 159/232 (68%), Positives = 192/232 (82%), Gaps = 1/232 (0%)

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           EF LD +RL +TVY  D++AF LWKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF
Sbjct: 1   EFGLDAKRLLVTVYHTDDDAFNLWKKIAGLSDDKIIRIATSDNFWAMGDTGPCGPCSEIF 60

Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G+ I GG PGS E +G+R+IEIWNLVFMQFEQ  K++R  LP+ SIDTGMGLER+A 
Sbjct: 61  YDHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQITKEQRVDLPRPSIDTGMGLERVAA 120

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ K +NYDIDLF+ LI+ASE+ TG+K EG +  +HRVI DHLRSS+FLIADG+LP+NE
Sbjct: 121 VLQGKHDNYDIDLFRALIEASEEATGVKAEGEHRASHRVIADHLRSSAFLIADGVLPSNE 180

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           GRGYVLRRIMRRAM +A+LLG  EPLM  LLPAL  +MG AYPEL++A+ L 
Sbjct: 181 GRGYVLRRIMRRAMRHAQLLGAKEPLMWKLLPALIQQMGRAYPELVRAEALT 232


>gi|2654772|gb|AAC32529.1| alanyl-tRNA synthase [Mycoplasma hyopneumoniae]
          Length = 186

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 118/182 (64%), Gaps = 6/182 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + + 
Sbjct: 5   SANEIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD 
Sbjct: 65  NSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G  
Sbjct: 121 KNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSKKTNFWDLGQ-GPCGPCSEIYFDRGPK 178

Query: 183 IP 184
             
Sbjct: 179 FD 180


>gi|259015935|gb|ACV89250.1| alanyl-tRNA synthetase [Platystoechotes sp. BMW-2009]
          Length = 226

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/228 (39%), Positives = 128/228 (56%), Gaps = 19/228 (8%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEA 136
            HHTFFEMLGN+SFG YFK+     AW+LLT+ F L    LY+T +        + D E 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKKEICTWAWELLTQVFKLPADNLYVTYFGGHEASGLEPDLEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
             +W K+ G+    I+  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  KNIWLKL-GVLEHHILPGSMKDNFWEMGETGPCGPCSELHFDRIGNRD-AAHLVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF +++     +LPK  ID G+GLER+ +V+Q K  NYD DLF  L +A 
Sbjct: 119 VLEIWNLVFIQFNRESDGSLKLLPKKHIDCGLGLERLVSVIQGKRANYDTDLFTSLFEAI 178

Query: 257 EQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANE 295
           ++ TG++               + +RV+ DH R+ +  +ADG  P N 
Sbjct: 179 QKGTGIREYQGKIGDADKDGIDMAYRVLGDHARTLTIALADGGRPDNT 226


>gi|183011928|gb|ACC37893.1| alanyl-tRNA synthetase [Microsepsis armillata]
          Length = 179

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/181 (43%), Positives = 102/181 (56%), Gaps = 15/181 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPXFLGTAXPNSEMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209
            I+     DNFW M ETGPCGPCSE+ FD+           + +    +E WNLVF+QF 
Sbjct: 120 HILPGNMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEXWNLVFIQFN 178

Query: 210 Q 210
           +
Sbjct: 179 R 179


>gi|164503900|gb|ABY59260.1| alanyl-tRNA synthetase [Afroleptomydas sp. 'Clanwilliam']
          Length = 183

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E  ++W  + G+  + I+  + 
Sbjct: 61  ETCTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWSNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPNVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|51102334|gb|AAT95880.1| alanyl-tRNA synthetase [Trichomonas vaginalis]
          Length = 1003

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 159/927 (17%), Positives = 312/927 (33%), Gaps = 185/927 (19%)

Query: 9   TTFLEFFQKNG------HELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAV 61
             +L+F +         +  +    ++      + F  +G+  F+    TG+ +P    +
Sbjct: 88  QAWLDFKKSMETNTPVPYTAIKRYPVVCRWRSDVDFVAAGIYCFQPFCVTGESEPPANPL 147

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG----NFS---------FGG----YFKE 104
              Q C+R     NDLDN+G T RH++ F MLG    N +         FG     ++K+
Sbjct: 148 CACQFCLR----FNDLDNIGITGRHYSGFNMLGIQVFNHADRARKEPNQFGETEEIFWKD 203

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
             I   +   T+   LD ++L                             T  ++ W+  
Sbjct: 204 TLIANNYRWCTETLHLDPKKL-----------------------------TFIEDVWAGG 234

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
             G CG C E F+                    +EI N+VF ++    + E   +    +
Sbjct: 235 --GNCGACVEYFY------------------GGLEIGNMVFTEYTVSPQGEFSPISTKVV 274

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ-------------------------- 258
           D G+GLER+  ++     +Y +D+F +++    Q                          
Sbjct: 275 DVGIGLERIPWLVNGGWTSY-LDVFDYILPVLSQKLDVPIDTPEFRKFAPNTALFDADEN 333

Query: 259 --------------------VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
                               +   +       +   I DH R+  + I DG LP+N G  
Sbjct: 334 QHIEQTWAKVGEEMGLDKAGLAKFRQHLRQFSDLVRICDHTRTVLYAIEDGALPSNNGGA 393

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMM--HLLPALCTEMG--SAYPELIQAKLLIEETLRSE 354
             +R I+R      +   +   +     ++      M     +         +E+ +R E
Sbjct: 394 ANIRDILRIVFDIIKKHNWLGKIGGVDGIIDVFKAHMKGLEGFFGPFSNTRCLEDVIRLE 453

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
             R+  +    + LL   ++     EI           ++G+  D + +           
Sbjct: 454 FTRWENSHANAIKLLKSFVNKWRGKEI-PVQEWITQMTSNGVSADEIIEAFQ-------- 504

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
                                      + ++  L+E    T   G +L + +     D +
Sbjct: 505 ----------------VDDPNSQLQKPDDLYIKLEEYKCRTA-KGIELEKYNVEGIPDTE 547

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
            +   P  +     ++ +  ++   ++V            FD+T  Y   GGQ  D G  
Sbjct: 548 EIYNYPENEYKYEGTAKLIKLLAPNKLV------------FDRTILYPTQGGQEHDDGKI 595

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                +L      +K   + +     +           + +D + R  +   HSATHL+ 
Sbjct: 596 KIGD-KLYEVQNIEKVRKVAIFTVDGDVDEKYVNTECTMYVDPEVREIMRTQHSATHLVA 654

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            A   +LG HV QNG+  T      D+TH    T  ++  I+   N++I  N  V   + 
Sbjct: 655 AAARRVLGPHVWQNGAKKTKVESHIDLTHYSLPTFEQVLEIQRVANELIMTNAAVKKCVY 714

Query: 655 NREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            R++A       L        + +RVV +   D     +  C GTHVS   EI  + I+ 
Sbjct: 715 TRKEAEDKWGFVLYQGGAIPGNDIRVVDIGGID-----TEACCGTHVSHLSEIGQIRILG 769

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
            +S++ G+ R   + G+ A          +  + +     Q +++    + +     L  
Sbjct: 770 VNSVQDGVFRCTFVAGKLAIKAACEDMRLIHDVCTVYGCQQSDIMMNCNKFFAAKNSLTS 829

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLV 828
            +     Q+    +    ++  D + +        S  K +        +     I++  
Sbjct: 830 QNKALTDQVISLLVKCCAYQPGDKHVVIRSEENGTSFIKGIDEACKQFPEMANKSILV-- 887

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL 855
               +    ++ +V +D+ D+  A ++
Sbjct: 888 ----QGPTYIVGMVQQDIADKL-AKEI 909


>gi|164503890|gb|ABY59255.1| alanyl-tRNA synthetase [Phycus frommeri]
          Length = 183

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E  ++W K+ G+  + I+  + 
Sbjct: 61  EICAWAWELLTERLKLPKERLYVTYFGGNEKAGLEPDLECKEIWLKL-GIKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREQDGTL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|123455522|ref|XP_001315505.1| alanyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
 gi|121898183|gb|EAY03282.1| alanyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
          Length = 1009

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 159/927 (17%), Positives = 312/927 (33%), Gaps = 185/927 (19%)

Query: 9   TTFLEFFQKNG------HELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAV 61
             +L+F +         +  +    ++      + F  +G+  F+    TG+ +P    +
Sbjct: 94  QAWLDFKKSMETNTPVPYTAIKRYPVVCRWRSDVDFVAAGIYCFQPFCVTGESEPPANPL 153

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG----NFS---------FGG----YFKE 104
              Q C+R     NDLDN+G T RH++ F MLG    N +         FG     ++K+
Sbjct: 154 CACQFCLR----FNDLDNIGITGRHYSGFNMLGIQVFNHADRARKEPNQFGETEEIFWKD 209

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
             I   +   T+   LD ++L                             T  ++ W+  
Sbjct: 210 TLIANNYRWCTETLHLDPKKL-----------------------------TFIEDVWAGG 240

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
             G CG C E F+                    +EI N+VF ++    + E   +    +
Sbjct: 241 --GNCGACVEYFY------------------GGLEIGNMVFTEYTVSPQGEFSPISTKVV 280

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ-------------------------- 258
           D G+GLER+  ++     +Y +D+F +++    Q                          
Sbjct: 281 DVGIGLERIPWLVNGGWTSY-LDVFDYILPVLSQKLDVPIDTPEFRKFAPNTALFDADEN 339

Query: 259 --------------------VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
                               +   +       +   I DH R+  + I DG LP+N G  
Sbjct: 340 QHIEQTWAKVGEEMGLDKAGLAKFRQHLRQFSDLVRICDHTRTVLYAIEDGALPSNNGGA 399

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMM--HLLPALCTEMG--SAYPELIQAKLLIEETLRSE 354
             +R I+R      +   +   +     ++      M     +         +E+ +R E
Sbjct: 400 ANIRDILRIVFDIIKKHNWLGKIGGVDGIIDVFKAHMKGLEGFFGPFSNTRCLEDVIRLE 459

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
             R+  +    + LL   ++     EI           ++G+  D + +           
Sbjct: 460 FTRWENSHANAIKLLKSFVNKWRGKEI-PVQEWITQMTSNGVSADEIIEAFQ-------- 510

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
                                      + ++  L+E    T   G +L + +     D +
Sbjct: 511 ----------------VDDPNSQLQKPDDLYIKLEEYKCRTA-KGIELEKYNVEGIPDTE 553

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
            +   P  +     ++ +  ++   ++V            FD+T  Y   GGQ  D G  
Sbjct: 554 EIYNYPENEYKYEGTAKLIKLLAPNKLV------------FDRTILYPTQGGQEHDDGKI 601

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                +L      +K   + +     +           + +D + R  +   HSATHL+ 
Sbjct: 602 KIGD-KLYEVQNIEKVRKVAIFTVDGDVDEKYVNTECTMYVDPEVREIMRTQHSATHLVA 660

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            A   +LG HV QNG+  T      D+TH    T  ++  I+   N++I  N  V   + 
Sbjct: 661 AAARRVLGPHVWQNGAKKTKVESHIDLTHYSLPTFEQVLEIQRVANELIMTNAAVKKCVY 720

Query: 655 NREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            R++A       L        + +RVV +   D     +  C GTHVS   EI  + I+ 
Sbjct: 721 TRKEAEDKWGFVLYQGGAIPGNDIRVVDIGGID-----TEACCGTHVSHLSEIGQIRILG 775

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
            +S++ G+ R   + G+ A          +  + +     Q +++    + +     L  
Sbjct: 776 VNSVQDGVFRCTFVAGKLAIKAACEDMRLIHDVCTVYGCQQSDIMMNCNKFFAAKNSLTS 835

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLV 828
            +     Q+    +    ++  D + +        S  K +        +     I++  
Sbjct: 836 QNKALTDQVISLLVKCCAYQPGDKHVVIRSEENGTSFIKGIDEACKQFPEMANKSILV-- 893

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL 855
               +    ++ +V +D+ D+  A ++
Sbjct: 894 ----QGPTYIVGMVQQDIADKL-AKEI 915


>gi|164503926|gb|ABY59273.1| alanyl-tRNA synthetase [Lestomyia fraudiger]
          Length = 183

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQSGLEPDLECKDIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREPDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|299561766|gb|ADJ36955.1| alanyl-tRNA synthetase [Chyliza scrobiculata]
          Length = 184

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 108/185 (58%), Gaps = 14/185 (7%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMSKWLRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+  +L + RLY+T +        + D E  ++W  + GL A+ I+  + 
Sbjct: 61  EICSWAWEFLTERLNLPKDRLYVTYFGGHAESGLEPDLECRQIWLDL-GLKAEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGGGRSVPELVNMDDPDVLEIWNLVFIQYNREADSSL 179

Query: 217 FILPK 221
            +LPK
Sbjct: 180 RLLPK 184


>gi|299561746|gb|ADJ36945.1| alanyl-tRNA synthetase [Minettia lupulina]
          Length = 181

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/179 (43%), Positives = 104/179 (58%), Gaps = 15/179 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWVRVTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+  +L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICSWAWEFLTERLNLPKDRLYVTYFGGDEASGLGPDLECKQIWTDL-GLRPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNLDDPDVLEIWNLVFIQYNREPDGS 177


>gi|255521189|ref|ZP_05388426.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
          Length = 319

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 117/322 (36%), Positives = 177/322 (54%), Gaps = 13/322 (4%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ 
Sbjct: 2   TIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEK 61

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T
Sbjct: 62  IWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNT 116

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE+
Sbjct: 117 ADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQ 176

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQ 817
           +  + R+++  +     +L     +       +I  V  ++  ++  D  +L+  +D  +
Sbjct: 177 LQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWK 236

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            K   GI++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ
Sbjct: 237 DKKIGGILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQ 294

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
           +GG N  +   A+  V++++K+
Sbjct: 295 AGGKNPAELGTALDYVSTWVKE 316


>gi|164503936|gb|ABY59278.1| alanyl-tRNA synthetase [Atomosia puella]
          Length = 184

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 14/185 (7%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPHSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERIKLPKERLYVTYFGGNKDAGLEPDYECRDIWLNL-GIKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGGGRSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 179

Query: 217 FILPK 221
            +LPK
Sbjct: 180 KLLPK 184


>gi|164503932|gb|ABY59276.1| alanyl-tRNA synthetase [Saropogon luteus]
          Length = 183

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKDIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGD-RSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|299561750|gb|ADJ36947.1| alanyl-tRNA synthetase [Lonchoptera tristis]
          Length = 183

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWIRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +        + D E  ++W  + GL  + II  + 
Sbjct: 61  EICTWAWEFLTDRLKLPKDRLYVTYFGGHEESGLEGDLECKQIWLDL-GLKPEHIIPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHYDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503928|gb|ABY59274.1| alanyl-tRNA synthetase [Molobratia teutonus]
          Length = 183

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPHSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E  ++W K+ G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGHEQAGLEPDLECKEIWLKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 RLLPK 183


>gi|164503952|gb|ABY59286.1| alanyl-tRNA synthetase [Trichardis sp. TD-2008]
          Length = 183

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECRNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|218678871|ref|ZP_03526768.1| alanyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 133

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/133 (71%), Positives = 110/133 (82%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTESFDL 120

Query: 121 DQRRLYITVYDED 133
            + RL +TVY ED
Sbjct: 121 PKHRLLVTVYSED 133


>gi|164503924|gb|ABY59272.1| alanyl-tRNA synthetase [Diogmites grossus]
          Length = 183

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKDIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503896|gb|ABY59258.1| alanyl-tRNA synthetase [Opomydas townsendi]
          Length = 183

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E  ++W+ + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWQNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503894|gb|ABY59257.1| alanyl-tRNA synthetase [Mitrodetus dentitarsis]
          Length = 183

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E  ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQSGLEPDLECKEIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503984|gb|ABY59302.1| alanyl-tRNA synthetase [Willistonina bilineata]
          Length = 183

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREPDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503898|gb|ABY59259.1| alanyl-tRNA synthetase [Mydas clavatus]
          Length = 183

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 110/185 (59%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E  ++W+K+ G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWQKL-GIKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503922|gb|ABY59271.1| alanyl-tRNA synthetase [Dasypogon diadema]
          Length = 183

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGHEAAGLEPDLECKDIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503966|gb|ABY59293.1| alanyl-tRNA synthetase [Acnephalum cylindricum]
          Length = 183

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +          D E  ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWEFLTERVKLPKDRLYVTYFGGNKEAGLDPDLECREIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREPDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 RLLPK 183


>gi|164503990|gb|ABY59305.1| alanyl-tRNA synthetase [Stichopogon punctum]
          Length = 183

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 RLLPK 183


>gi|164503982|gb|ABY59301.1| alanyl-tRNA synthetase [Tillobroma punctipennis]
          Length = 183

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVAPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +        + D E   +W K+ G+  + I+  + 
Sbjct: 61  EICTWAWEFLTDRLKLPKDRLYVTYFGGNEQAGLEPDFECKDIWLKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503972|gb|ABY59296.1| alanyl-tRNA synthetase [Lycostommyia albifacies]
          Length = 183

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +        + D E  ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWEFLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503996|gb|ABY59308.1| alanyl-tRNA synthetase [Damalis monochaetes]
          Length = 183

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVAPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W K+ G+  + I+  + 
Sbjct: 61  EICSWAWELLTERVKLPKDRLYVTYFGGNKEAGLEPDLECRDIWLKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREQDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KPLPK 183


>gi|164503970|gb|ABY59295.1| alanyl-tRNA synthetase [Gonioscelis ventralis]
          Length = 183

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 102/185 (55%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +        + D E   +W  + G+    I+  + 
Sbjct: 61  EICTWAWEFLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECRDIWLSL-GVKPQHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGD-RSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KSLPK 183


>gi|164503958|gb|ABY59289.1| alanyl-tRNA synthetase [Leptogaster cylindrica]
          Length = 183

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICSWAWELLTERLKLPKDRLYVTYFGGNEKAGLEPDLECKDIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREQDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|183011946|gb|ACC37902.1| alanyl-tRNA synthetase [Saltella sphondylii]
          Length = 182

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/180 (42%), Positives = 102/180 (56%), Gaps = 15/180 (8%)

Query: 47  KNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           K  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y
Sbjct: 1   KPFFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIR 153
           FK+     AW+ LT+   L + RLY+T +        + D E  ++W  + GL  + I+ 
Sbjct: 61  FKKEICTWAWEFLTERLCLPKDRLYVTYFGGDAASGLEPDLECKQIWLDL-GLKPEHILP 119

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
               DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 120 GNMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREAD 178


>gi|164503988|gb|ABY59304.1| alanyl-tRNA synthetase [Lasiopogon cinctus]
          Length = 183

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +        + D E  ++W K+ G+  + I+  + 
Sbjct: 61  EICSWAWELLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWLKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+QF +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQFNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|299561740|gb|ADJ36942.1| alanyl-tRNA synthetase [Stylogaster stylata]
          Length = 183

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/185 (44%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPSCEMAKWIRVTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT +  L + RLY+T +        + D E  ++W    G++A+ II    
Sbjct: 61  EICHWAWEFLTTKLMLPKERLYVTYFGGDQKGGLEPDLECKQIWLD-IGITAEHIIPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSEI FD+           +++    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSEIHFDRIGN-RSVPELVNQDDPDVLEIWNLVFIQFNREQNGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KPLPK 183


>gi|164503930|gb|ABY59275.1| alanyl-tRNA synthetase [Pegesimallus laticornis]
          Length = 183

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWSRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +        + D E  ++W  + G+ A+ I+  + 
Sbjct: 61  EICTWAWEFLTERMKLPKDRLYVTYFGGNEQAGLEPDLECKEIWLSL-GVKAEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPKLVNMDDPDVLEIWNLVFIQYNREPDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503992|gb|ABY59306.1| alanyl-tRNA synthetase [Stichopogon trifasciatus]
          Length = 183

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEADLECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 RLLPK 183


>gi|164503976|gb|ABY59298.1| alanyl-tRNA synthetase [Prolepsis tristis]
          Length = 183

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKPV-----YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPKSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ Q+     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNQELDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 RLLPK 183


>gi|164503974|gb|ABY59297.1| alanyl-tRNA synthetase [Plesiomma sp. 'Guanacaste']
          Length = 183

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERIKLPKERLYVTYFGGNEQAGLEPDLECRNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503980|gb|ABY59300.1| alanyl-tRNA synthetase [Scylaticus costalis]
          Length = 183

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT   +L + RLY+T +          D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLNLPKDRLYVTYFGGNKEGGLDPDLECRDIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503956|gb|ABY59288.1| alanyl-tRNA synthetase [Leptogaster arida]
          Length = 183

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGAADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + GL  + I+  + 
Sbjct: 61  EICSWAWELLTERLKLPKDRLYVTYFGGNEKSGLEPDLECKNIWLSL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREQDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|51102332|gb|AAT95879.1| alanyl-tRNA synthetase [Mastigamoeba balamuthi]
          Length = 208

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 93/209 (44%), Positives = 138/209 (66%), Gaps = 8/209 (3%)

Query: 93  LGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKII 152
           LGN+SFG Y+KE A+  +W+LLT+ + L + RL++TV+++D+E+ ++W ++SGL   +I+
Sbjct: 1   LGNWSFGDYYKEEALAWSWELLTQVWQLPKDRLFVTVFEDDDESAEIWARVSGLPK-RIM 59

Query: 153 RITTNDNFWSMAETGPCGPCSEIFFDQG------ECIPGGLPGSSEEGERYIEIWNLVFM 206
           +     NFW M +TGPCGPCSEI FD+G      E     + G +   +RYIEIWN VFM
Sbjct: 60  KFGAKSNFWEMGDTGPCGPCSEIHFDKGDLATQAETFADPIKGVNGTNDRYIEIWNNVFM 119

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-E 265
           Q+E+    E   L   ++DTGMG ER+  +LQ   +NYD D+F  +I    +++G+ Y +
Sbjct: 120 QYERVKSGELIPLKSKNVDTGMGFERVCAILQNVRSNYDTDVFSPIIAKIAELSGVPYGQ 179

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           G   + HRV+ DHLR+ SF IADG LP+N
Sbjct: 180 GPEGMPHRVVADHLRALSFAIADGALPSN 208


>gi|183011906|gb|ACC37882.1| alanyl-tRNA synthetase [Dicranosepsis cf. sauteri RM-2008]
          Length = 177

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 79/176 (44%), Positives = 101/176 (57%), Gaps = 15/176 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK IF G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPIFLGTVDPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVF 205
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVF 177


>gi|299561748|gb|ADJ36946.1| alanyl-tRNA synthetase [Melanina sp. JFG-2010]
          Length = 183

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G  +P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGIAEPNSDMSKWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT   +L + RLY+T +          D+E  ++W ++ GL  + I+  + 
Sbjct: 61  EICAWAWEFLTHRLNLPKDRLYVTYFGGDASSNLAPDDECRQIWLEL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREQDGIL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503954|gb|ABY59287.1| alanyl-tRNA synthetase [Lasiocnemus lugens]
          Length = 183

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGSADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICSWAWELLTERLQLPKDRLYVTYFGGNEQAGLEPDLECRDIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREQDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503942|gb|ABY59281.1| alanyl-tRNA synthetase [Lamyra gulo]
          Length = 183

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPHSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E  ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEEAGLEPDYECREIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|325996514|gb|ADZ51919.1| Alanyl-tRNA synthetase [Helicobacter pylori 2018]
          Length = 513

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 162/556 (29%), Positives = 264/556 (47%), Gaps = 52/556 (9%)

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + ++K ++ +    E+ERF +TL+ G+ L +  L HL +++I +G +AFKLYDT G PLD
Sbjct: 1   MKESKEMVMKECFEEEERFLETLESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLD 60

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  D+L + G   +D+  F   ++EQ  R++A   G  +      + ++   Y    F+G
Sbjct: 61  LTNDMLRSHGAC-VDMQGFEHCMQEQVKRSKASWKGKQNNA---DFSAILNAYAPNVFVG 116

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQT 518
           Y+                           S+        G + + EA   Q+V V+ ++T
Sbjct: 117 YETTE-----------------------CSAKALGFFDSGFKEMTEANPNQEVWVLLEKT 153

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GG +GD G  +       +    K   G+      +++ + + +  +    D  
Sbjct: 154 PFYAEGGGAIGDKGALLKGDEEAALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDE- 212

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R +++ +HSATHLL  AL  +LGSHVSQ GS +    LRFD +H+K +   EL+ +ED 
Sbjct: 213 -RFEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDL 271

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I ++L      M    A   GA AL   KY + VRVVS +       S  LCGG H
Sbjct: 272 VNAQIFKHLKSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKE-----ASIELCGGIH 326

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG I    IV ES + +G+RRIEA+ G+        ++++LK+    LK +  +V+ 
Sbjct: 327 VENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKILLKNN--DVIA 384

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            + ++ E  +  Q             DL   KI  V+ +  ++ + D   +K ++D L+ 
Sbjct: 385 GINKLKESVKNSQK-------APVPMDLPVEKIHGVSLVVGVVEQGD---IKEMVDRLKS 434

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K +  + M+     E   ++   V         A   A   A++L GG GGGR   A +G
Sbjct: 435 KHERLLAMVFKKENEH-ITLACGVKNAP---IKANAWANEVAQIL-GGKGGGRDDFASAG 489

Query: 879 GPNGNKADQAIAGVAS 894
           G +  K   A+    +
Sbjct: 490 GKDTEKLQAALNLAKN 505


>gi|184161011|gb|ACC68527.1| alanyl-tRNA synthetase [Ospriocerus aeacus]
          Length = 183

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 103/185 (55%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L   RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWEFLTDRLKLPSDRLYVTYFGGNEQAGLEPDLECKDIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503888|gb|ABY59254.1| alanyl-tRNA synthetase [Bombylius major]
          Length = 183

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGIVDPSSDMAKWVRVTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +        + D E  ++W  + G+  + ++  + 
Sbjct: 61  EICTWAWEFLTDRVGLPKDRLYVTYFGGNEQAGLEPDNECKQIWIDL-GVRPEHVLPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREQDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503986|gb|ABY59303.1| alanyl-tRNA synthetase [Lasiopogon aldrichii]
          Length = 183

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +          D E  ++W K+ G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLKLPKDRLYVTYFGGNEQAGLDPDLECKEIWLKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+QF +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQFNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|299561762|gb|ADJ36953.1| alanyl-tRNA synthetase [Platypeza sp. JFG-2010]
          Length = 183

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +Q VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLG +SFG YFK+
Sbjct: 1   FLGTVAPNSDMAKWQRVTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGTWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+  +L + RLY+T +  DE        E  ++W  + GL  + ++    
Sbjct: 61  EICAWAWEFLTERLNLPKDRLYVTYFAGDEAAGLEPDTECKQIWLDL-GLLPEHVLPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREQDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KPLPK 183


>gi|164503950|gb|ABY59285.1| alanyl-tRNA synthetase [Laphystia tolandi]
          Length = 183

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPHSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLKLPKDRLYVTYFGGNAEAGLEPDIECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+QF +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQFNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503948|gb|ABY59284.1| alanyl-tRNA synthetase [Pilica formidolosa]
          Length = 183

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICSWAWELLTERLKLPKDRLYVTYFGGNKEAGLEPDYECQNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGN-RSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503938|gb|ABY59279.1| alanyl-tRNA synthetase [Cerotainia albipilosa]
          Length = 183

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W K+ G+  + I+  + 
Sbjct: 61  EICSWAWELLTERIKLPKDRLYVTYFGGNKESGLEPDYECKDIWLKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|299561754|gb|ADJ36949.1| alanyl-tRNA synthetase [Spilogona sp. JFG-2010]
          Length = 183

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 81/185 (43%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +  DE        E  +LW  + GL  + I+  + 
Sbjct: 61  EICTWAWEFLTERLRLPEDRLYVTYFGGDEASGLAPDLECKQLWLDL-GLRPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREQDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KSLPK 183


>gi|164503968|gb|ABY59294.1| alanyl-tRNA synthetase [Connomyia varipennis]
          Length = 183

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 104/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P         V   QKC+RAGGKHNDLD+VG+   HHTFF+MLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSNMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFKMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLKLPKDRLYVTYFGGNKEAGLEPDLECKDIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWDMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREPDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 RLLPK 183


>gi|164503994|gb|ABY59307.1| alanyl-tRNA synthetase [Damalis annulata]
          Length = 183

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D +   +W K+ GL  + I+  + 
Sbjct: 61  EICSWAWELLTERVQLPKDRLYVTYFGGNKEAGLEPDLDCRDIWLKL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREPDGTL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KPLPK 183


>gi|164503940|gb|ABY59280.1| alanyl-tRNA synthetase [Choerades bella]
          Length = 183

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+ A+ I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNKEAGLEPDYECRDIWLNL-GVKAEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQFNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503892|gb|ABY59256.1| alanyl-tRNA synthetase [Hemigephyra atra]
          Length = 183

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 103/185 (55%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L   RLY+T +        + D E  ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWEFLTDRLKLPSDRLYVTYFGGNEQAGLEPDLECKEIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREQDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KQLPK 183


>gi|164503946|gb|ABY59283.1| alanyl-tRNA synthetase [Nusa infumata]
          Length = 183

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPHSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT   +L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLNLPKDRLYVTYFGGNEEAGLEPDYECRDIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|299561744|gb|ADJ36944.1| alanyl-tRNA synthetase [Heterophlebus versabilis]
          Length = 183

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT +  L + RLY+T +          D E  ++W K  G+  + +I    
Sbjct: 61  EICTWAWEFLTDKLKLPKDRLYVTYFGGHQESGLKPDLECKEIWLK-IGVKPEHVIPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
           NDNFW M ETGPCGPCSE+ FD+           +++    +EIWNLVF+QF ++   + 
Sbjct: 120 NDNFWEMGETGPCGPCSELHFDRIGE-RSVPELVNQDDPDVLEIWNLVFIQFNREIDGKL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KSLPK 183


>gi|164503944|gb|ABY59282.1| alanyl-tRNA synthetase [Laxenecera albicincta]
          Length = 183

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPHSEMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + GL  + I+  + 
Sbjct: 61  EICTWAWELLTERIKLPKDRLYVTYFGGNEAAGLEPDYECRDIWLSL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREADGNL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 TLLPK 183


>gi|164503978|gb|ABY59299.1| alanyl-tRNA synthetase [Rhabdogaster pedion]
          Length = 183

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLKLPKDRLYVTYFGGHKEAGLEPDLECRDIWMNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREQDSSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|183011944|gb|ACC37901.1| alanyl-tRNA synthetase [Saltella nigripes]
          Length = 182

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/184 (41%), Positives = 104/184 (56%), Gaps = 15/184 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +        + D E  ++W  + GL  + I+    
Sbjct: 61  EICTWAWEFLTERLCLPKDRLYVTYFGGDAASGLEPDLECKQIWLDL-GLKPEHILPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREADSSL 178

Query: 217 FILP 220
            +LP
Sbjct: 179 KMLP 182


>gi|164503998|gb|ABY59309.1| alanyl-tRNA synthetase [Holcocephala calva]
          Length = 183

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 104/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK 
Sbjct: 1   FLGTADPNNDMSKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKI 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+    
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNKNAGLEPDIECKNIWLNL-GIKPEHILPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGN-RSVPELVNMDDPDVLEVWNLVFIQYNRETDGTL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503902|gb|ABY59261.1| alanyl-tRNA synthetase [Neolophonotus bimaculatus]
          Length = 183

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +        + D E  ++W+ + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTDRLKLPKDRLYVTYFGGNEQAGLEPDHECKEIWRSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|299561764|gb|ADJ36954.1| alanyl-tRNA synthetase [Lamprogaster nigripes]
          Length = 183

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSEMSKWIRTCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  DE        E  +LW  + GL  + ++  + 
Sbjct: 61  EICTWAWEFLTDTLHLPKDRLYVTYFGGDEASGLAPDLECKELWLSL-GLKPEHVLPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           +++    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNQDDPDVLEIWNLVFIQYNREQDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503904|gb|ABY59262.1| alanyl-tRNA synthetase [Philodicus tenuipes]
          Length = 183

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT+   L + RLY+T +        + D E  ++W+K+ G+  + I+  + 
Sbjct: 61  EICTWAWEMLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWEKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KQLPK 183


>gi|289762725|ref|ZP_06522103.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis GM 1503]
 gi|289710231|gb|EFD74247.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis GM 1503]
          Length = 494

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 151/506 (29%), Positives = 232/506 (45%), Gaps = 49/506 (9%)

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D I F + + EQR RA+A +        +   +      GAT+F G+D LR       
Sbjct: 10  QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS------ 63

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQTPFYAE 523
                             + +  I   G+ V          A  GQ+VE+V D+TP YAE
Sbjct: 64  -----------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPLYAE 106

Query: 524 AGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           +GGQ+ D G   G    +  R  +TDVQK A+ ++VH   VE G      +++  +D   
Sbjct: 107 SGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGW 166

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   +E+  
Sbjct: 167 RRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVT 226

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S  LCGGTHV
Sbjct: 227 NEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLELCGGTHV 282

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V  R
Sbjct: 283 SNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPAR 342

Query: 760 VEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVM 813
           V  + E  R  +    + ++               +I +V  ++  +S  + + +L+S++
Sbjct: 343 VANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLI 402

Query: 814 DALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
             ++ K+ S   ++ L+   + +     +       D    A DL +  A  +  G GGG
Sbjct: 403 GDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE-GRGGG 461

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  +AQ  G N    D A+  V S +
Sbjct: 462 KADLAQGSGKNPTGIDAALDAVRSEI 487


>gi|183011912|gb|ACC37885.1| alanyl-tRNA synthetase [Dicranosepsis emiliae]
          Length = 182

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 104/184 (56%), Gaps = 15/184 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICSWAWEFLTXRLALPKDRLYVTYFGGDEASGLEPDYECKQIWMDL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREADSSL 178

Query: 217 FILP 220
            +LP
Sbjct: 179 KLLP 182


>gi|164503914|gb|ABY59267.1| alanyl-tRNA synthetase [Dysmachus trigonus]
          Length = 183

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +  DE        E  ++W+ + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTDRLKLPKDRLYVTYFGGDEKAGLEPDLECKEIWRSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KQLPK 183


>gi|183011996|gb|ACC37927.1| alanyl-tRNA synthetase [Toxopoda sp. 2 RM-2008]
          Length = 181

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 78/178 (43%), Positives = 103/178 (57%), Gaps = 15/178 (8%)

Query: 47  KNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           K  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y
Sbjct: 1   KPFFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIR 153
           FK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+ 
Sbjct: 61  FKKEICTWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILP 119

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
            +  DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++
Sbjct: 120 GSMKDNFWEMGETGPCGPCSELHFDRI-GGXSVPELVNMDXPDVLEIWNLVFIQFNRE 176


>gi|183011886|gb|ACC37872.1| alanyl-tRNA synthetase [Heterocheila buccata]
          Length = 183

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 103/185 (55%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE
Sbjct: 1   FLGTADPNSDMSKWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKE 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  DE        E  + W  + G+  + I+    
Sbjct: 61  EICSFAWEFLTDCLKLPKDRLYVTYFGGDEKSSLEADLECQQFWLNL-GVKPEHILPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGD-RSVPELVNMDDPDVLEIWNLVFIQFNREQNGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503918|gb|ABY59269.1| alanyl-tRNA synthetase [Philonicus albiceps]
          Length = 183

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGIADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +        + D E  ++W+ + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWRSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|183011884|gb|ACC37871.1| alanyl-tRNA synthetase [Gluma nitida]
          Length = 177

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 102/179 (56%), Gaps = 15/179 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      ++ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVSPNVEMSKWKRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  DE        E  ++W  + GL  + I+    
Sbjct: 61  EICAWAWEFLTDRLKLPRERLYVTYFGGDETCGLAPDMECRQIWLDL-GLKPEHILPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++   +
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREQNGD 177


>gi|196018718|ref|XP_002118857.1| hypothetical protein TRIADDRAFT_62857 [Trichoplax adhaerens]
 gi|190577957|gb|EDV18657.1| hypothetical protein TRIADDRAFT_62857 [Trichoplax adhaerens]
          Length = 510

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 200/607 (32%), Positives = 292/607 (48%), Gaps = 99/607 (16%)

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+LP+NEGRGYVLRRI+RRAM +   +GY   L+  L P    EM   Y EL +A  LI 
Sbjct: 1   GVLPSNEGRGYVLRRILRRAMRHIHNIGYKGNLLSKLAPVFINEMNDIYSELEEASDLII 60

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            TL  E+ERF +TL  G+  L   ++ L +   LNG   FKLYDT+G PLD+  DIL  +
Sbjct: 61  STLDIEEERFRETLRIGMKYLKEEINTLSEGASLNGSKVFKLYDTYGFPLDLTADILKDK 120

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F  A++EQ+ +ARA   G G      IWF + +K+G T+FI          
Sbjct: 121 KIK-LDYDGFESAMQEQKRKARAAWSGSGEKDFSSIWFDIYDKFGGTEFI---------- 169

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                  V+AI++ G++V++A +G+ V +V DQT FYAE+GGQ+
Sbjct: 170 -------------RKDDGSYVGKVQAIIKDGKLVQKASTGEDVIIVTDQTTFYAESGGQI 216

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    + +        KK       H +  +  +     +   +DY  R  +  NHS
Sbjct: 217 GDRGYINDNEVY-----DTKKFADKIHGHYVCLKNDISIGDEVKFLVDYNLRNLIKANHS 271

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  ILG HV+Q GS ++ D LRFD  H+K +T  E+ ++E  VN II  N  
Sbjct: 272 ATHILHFALREILGKHVTQKGSLVSYDKLRFDFAHNKAMTKDEIINVEKRVNSIIMLNSS 331

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + T +M+ + A  SGA AL G KY++ VRVVS+        S  LCGGT V +TG+I  L
Sbjct: 332 ISTNLMSIDAAKKSGAMALFGEKYDEEVRVVSMGE------SIELCGGTRVKNTGDIKDL 385

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
              +E                                    K     ++ ++EEI     
Sbjct: 386 AKSNE------------------------------------KYKNELLLNKLEEI----- 404

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                                 + D+  +   I   D   LK + D L+ K  S II++ 
Sbjct: 405 ---------------------NVKDIRILLLKIYN-DKVNLKGIYDNLKSKKTSIIILIN 442

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                KK S+LI VT+D+ +++NA +L +    ++  G GGG    AQ+ G N +  D+ 
Sbjct: 443 TDKNNKKTSLLIGVTKDISNKYNAKELIQSCFSIIN-GKGGGNSEYAQASGDNIDVEDKI 501

Query: 889 IAGVASF 895
           +  +  +
Sbjct: 502 LDKIKEY 508


>gi|164503912|gb|ABY59266.1| alanyl-tRNA synthetase [Asilus sericeus]
          Length = 183

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +        + D E  ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTDRLKLPKDRLYVTYFGGNEEAGLEPDLECKEIWMNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503908|gb|ABY59264.1| alanyl-tRNA synthetase [Proctacanthus philadelphicus]
          Length = 183

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT+   L + RLY+T +        + D E  ++W+ + G+  + I+  + 
Sbjct: 61  EICSWAWEMLTERLKLPKDRLYVTYFGGNEEAGLEPDNECKEIWQNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503910|gb|ABY59265.1| alanyl-tRNA synthetase [Asilus crabroniformis]
          Length = 183

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +        + D E  ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTDRLKLPKERLYVTYFGGNKEAGLEPDLECKEIWMNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|259015937|gb|ACV89251.1| alanyl-tRNA synthetase [Hydropsyche phalerata]
          Length = 208

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/210 (38%), Positives = 114/210 (54%), Gaps = 19/210 (9%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEA 136
            HHTFFEMLGN+SFG YFK+     AW+LLT+   L   RLY+T +          D+E 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKKEICSWAWELLTEVLKLPSERLYVTYFGGDSKSGLDPDDEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
             +W  + G+    I+  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  KNIWLNL-GVLPSHILPGSMKDNFWEMGETGPCGPCSELHFDRI-GGREAAHLVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF ++      +LPK  ID G+GLER+ +V+Q K  NYD D+F  + +A 
Sbjct: 119 VLEIWNLVFIQFNRETDGSLRLLPKKHIDCGLGLERLVSVIQNKRANYDTDIFVPIFEAI 178

Query: 257 EQVTGMKYEGNN---------IVNHRVIVD 277
           ++ T  +               + +RV+ D
Sbjct: 179 QKGTNSRPYSGKVGSEDVDGIDMAYRVLAD 208


>gi|164503960|gb|ABY59290.1| alanyl-tRNA synthetase [Emphysomera pallidapex]
          Length = 183

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT+   L   RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTERLKLPSDRLYVTYFGGHEQAGLEPDLECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503934|gb|ABY59277.1| alanyl-tRNA synthetase [Dioctria atricapillus]
          Length = 183

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMSKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D +  ++W K+ G+ A+ I+  + 
Sbjct: 61  EICAWAWELLTERLRLPKDRLYVTYFGGNEQSGLEPDLDCKEIWMKL-GVKAEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNREPDSSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503906|gb|ABY59263.1| alanyl-tRNA synthetase [Pogonioefferia pogonias]
          Length = 183

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGIADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT+   L + RLY+T +        + D E  ++W+ + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTERLKLPKDRLYVTYFGGNEEAGLEPDHECKEIWQNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164504010|gb|ABY59315.1| alanyl-tRNA synthetase [Neoitamus cyanurus]
          Length = 183

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT+   L + RLY+T +        + D E  ++W+ + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTERLKLPKDRLYVTYFGGNEKAGLEPDVECQEIWRSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503964|gb|ABY59292.1| alanyl-tRNA synthetase [Ommatius tibialis]
          Length = 183

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT    L   RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICSWAWEMLTDRLKLPSDRLYVTYFGGNEKAGLEPDLECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503920|gb|ABY59270.1| alanyl-tRNA synthetase [Tolmerus atricapillus]
          Length = 183

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +        + D E  ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWMSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|183011942|gb|ACC37900.1| alanyl-tRNA synthetase [Saltella bezzii]
          Length = 177

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/177 (42%), Positives = 101/177 (57%), Gaps = 15/177 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +        + D E  ++W  + GL  + I+    
Sbjct: 61  EICTWAWEFLTERLCLPKDRLYVTYFGGDAASGLEPDLECKQIWLDL-GLKPEHILPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREAD 175


>gi|183011892|gb|ACC37875.1| alanyl-tRNA synthetase [Archisepsis pleuralis]
          Length = 173

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/173 (44%), Positives = 102/173 (58%), Gaps = 10/173 (5%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+
Sbjct: 3   KWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTE 62

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +  DE        E  ++W  + GL  + I+     DNFW M ETGP
Sbjct: 63  RLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGP 121

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           CGPCSE+ FD+           + +    +EIWNLVF+QF ++      +LPK
Sbjct: 122 CGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREADSSLKLLPK 173


>gi|183011916|gb|ACC37887.1| alanyl-tRNA synthetase [Dicranosepsis javanica]
          Length = 176

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/177 (42%), Positives = 101/177 (57%), Gaps = 15/177 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICTWAWEFLTDRLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREAD 175


>gi|183011896|gb|ACC37877.1| alanyl-tRNA synthetase [Archisepsis scabra]
          Length = 175

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 101/172 (58%), Gaps = 10/172 (5%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+
Sbjct: 6   KWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTE 65

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +  DE        E  ++W  + GL  + I+     DNFW M ETGP
Sbjct: 66  RLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGP 124

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP 220
           CGPCSE+ FD+           + +    +EIWNLVF+Q+ ++      +LP
Sbjct: 125 CGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREADSSLKLLP 175


>gi|223986204|ref|ZP_03636222.1| hypothetical protein HOLDEFILI_03532 [Holdemania filiformis DSM
           12042]
 gi|223961818|gb|EEF66312.1| hypothetical protein HOLDEFILI_03532 [Holdemania filiformis DSM
           12042]
          Length = 397

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 143/402 (35%), Positives = 218/402 (54%), Gaps = 14/402 (3%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V  A+   + EV+ D++ FYAE+GGQ+ D G    D    ++ DV+K     F+HH  V 
Sbjct: 3   VRVAMLEDEGEVILDRSCFYAESGGQVADGGTMSCDEADCEVLDVKKAPHKQFMHHVKVV 62

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G+L+  M L L +D Q R +   NHS  HL+  AL  I+G H++Q GS +  D  RFD 
Sbjct: 63  DGVLKEGMKLQLQVDVQRRIRTMANHSCVHLMQSALKKIVGDHIAQAGSYVCQDYARFDF 122

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           TH + ++  +LK +E  VND +    PV T +M  E+A  SGA AL   KY D VRVVS+
Sbjct: 123 THFEKVSDQQLKEVEALVNDFVMAKFPVHTEVMAIEEAKHSGAIALFDEKYGDEVRVVSM 182

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S  LC GTHV +T +I +  IVSE SI +GIRRI A TG  A    + + + 
Sbjct: 183 -----GEVSKELCAGTHVHNTQDIGVFKIVSEESIGSGIRRITAKTGYAAYQEFVSEQDV 237

Query: 742 LKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVN 795
           LK++A+ LK++  N V  +V  + EE   L+    +   ++ V            +  +N
Sbjct: 238 LKTIAAQLKMNSLNGVSEKVAGVLEENAALKKEIGQLNQKMMVFKADDMVNHAEAVNGLN 297

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVD 854
            +   +S +D + +K++ + L+ K +   I L   S E K + +   +++ + +   A D
Sbjct: 298 IILEKVSGLDGQAMKNLAETLRNKCEKSFIFLANPS-EGKVTYVCACSKEAIAKGIKAGD 356

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +++A+ +  G GGGRP MAQSGG +G+K D+  A + S L
Sbjct: 357 FVKMAAQ-MSQGNGGGRPDMAQSGGKDGSKVDEVFALIRSKL 397


>gi|299561728|gb|ADJ36936.1| alanyl-tRNA synthetase [Leopoldius coronatus]
          Length = 182

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 77/183 (42%), Positives = 102/183 (55%), Gaps = 15/183 (8%)

Query: 51  TGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKER 105
            G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  
Sbjct: 1   LGTVDPNSEMAKWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKTE 60

Query: 106 AIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTN 157
             + AW+ LT    L +  LY+T +  DE        E  +LW    G+  + I+  T  
Sbjct: 61  ICRWAWEFLTNRLQLSKDNLYVTYFGGDEKSGLAPDVECKQLWLD-IGVIPEHIVPGTLK 119

Query: 158 DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF 217
           DNFW M +TGPCGPCSEI FD+           +++    +EIWNLVF+Q+ +++     
Sbjct: 120 DNFWEMGDTGPCGPCSEIHFDRI-GGRSVPELVNQDDPDVLEIWNLVFIQYNREDNGNLL 178

Query: 218 ILP 220
            LP
Sbjct: 179 ALP 181


>gi|183011926|gb|ACC37892.1| alanyl-tRNA synthetase [Meroplius fukuharai]
          Length = 175

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 76/177 (42%), Positives = 102/177 (57%), Gaps = 15/177 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICSWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREAD 175


>gi|149002766|ref|ZP_01827692.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147759060|gb|EDK66054.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
          Length = 426

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 213/413 (51%), Gaps = 18/413 (4%)

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           + +  +      T+ +SS + AIV     V     G    ++F +T FYAE GGQ+ D G
Sbjct: 12  QNITVESVFNYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVADYG 70

Query: 533 CAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
             + +  ++  T    +KA      H +     L       L ID   R ++  NH+ATH
Sbjct: 71  QILDESGKIVATVTNVQKAPNGQALHTVEVLAPLALNQEYTLAIDSNRRHRVMKNHTATH 130

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L V T
Sbjct: 131 LLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEALEVKT 190

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L  IV
Sbjct: 191 VETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGLFKIV 245

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKL 770
            E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+ R+L
Sbjct: 246 KEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQLRQL 305

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q  +A+ K +              ++    +++  +S  D+  L++  D  ++K  S ++
Sbjct: 306 QKENAELKEKAAAAAAGDIFKDAKEVNGRRYIASQVSVSDAGALRTFADNWKQKDYSDLL 365

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 366 VLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 413


>gi|183011882|gb|ACC37870.1| alanyl-tRNA synthetase [Icaridion debile]
          Length = 183

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 102/185 (55%), Gaps = 15/185 (8%)

Query: 50  FTGQEKPV-----YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F     P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLETADPNSEMSRWIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  DE        E  ++W  + GL  + +I    
Sbjct: 61  EICSWAWEFLTDCLKLPKDRLYVTYFGGDESSGLDPDYECRQIWLDL-GLKTEHVIPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGS-RSVPELVNMDDPDVLEIWNLVFIQYNREQNSTL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 MPLPK 183


>gi|259015953|gb|ACV89259.1| alanyl-tRNA synthetase [Bittacidae sp. BMW-2009]
          Length = 235

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 93/233 (39%), Positives = 126/233 (54%), Gaps = 19/233 (8%)

Query: 99  GGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADK 150
           G YFK      AW+LLT  F L   RLY+T +        + DEE   +W K+ G+ A  
Sbjct: 1   GDYFKTEICSWAWELLTHVFKLPADRLYVTYFGGDAASGLEPDEECKNIWLKL-GVPATH 59

Query: 151 IIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ 210
           ++     DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +
Sbjct: 60  VLPGNMKDNFWEMGETGPCGPCSELHFDRI-GGRDVPELVNMDDPDVLEIWNLVFIQYNR 118

Query: 211 QNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-- 268
           ++     +LPK  ID G+G ER+ +V+Q K  NYD DLF  L  A +  TG         
Sbjct: 119 ESDGSLKLLPKKHIDCGLGFERLVSVIQNKRANYDTDLFIPLFDAIQNGTGAPPYQGRVG 178

Query: 269 -------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
                   + +RV+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA  
Sbjct: 179 AEDSDGIDMAYRVLADHARTITIALADGGHPDNTGRGYVLRRILRRAVRYATE 231


>gi|259015951|gb|ACV89258.1| alanyl-tRNA synthetase [Boreus brumalis]
          Length = 208

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/182 (43%), Positives = 108/182 (59%), Gaps = 10/182 (5%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EA 136
            HHTFFEMLGN+SFG YFK    + AW+LLT+ F L   RLY+T +  DE        E 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKTEICEWAWELLTEVFKLPADRLYVTYFGGDEASGLEPDNEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
            ++W ++ G+    ++  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  KEIWLRL-GVPPSHVLPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRDVPELVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF +++      LPK  ID GMG ER+ +V+Q K  NYD DLF  L +A 
Sbjct: 119 VLEIWNLVFIQFNRESDSSLKPLPKKHIDCGMGFERLVSVIQNKRANYDTDLFVPLFEAI 178

Query: 257 EQ 258
           ++
Sbjct: 179 QK 180


>gi|183011998|gb|ACC37928.1| alanyl-tRNA synthetase [Zuskamira inexpectata]
          Length = 180

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/177 (42%), Positives = 100/177 (56%), Gaps = 15/177 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW  LT+   L + RLY+T +        + D E  ++W  + GL  + I+    
Sbjct: 61  EICTWAWQFLTERLCLPKDRLYVTYFGGDAASGLEPDLECKQIWMDL-GLKPEHILPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++  
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREAD 175


>gi|183011994|gb|ACC37926.1| alanyl-tRNA synthetase [Toxopoda sp. 1 RM-2008]
          Length = 180

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/177 (43%), Positives = 102/177 (57%), Gaps = 15/177 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICTWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++  
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFXREAD 175


>gi|164503916|gb|ABY59268.1| alanyl-tRNA synthetase [Machimus occidentalis]
          Length = 183

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLDNVG+   HHTFFEM GN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWVRVCNTQKCIRAGGKHNDLDNVGKDVNHHTFFEMXGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +        + D E  ++W  + G+  + I+  + 
Sbjct: 61  EICSWAWEMLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWTNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KQLPK 183


>gi|183011898|gb|ACC37878.1| alanyl-tRNA synthetase [Australosepsis frontalis]
          Length = 173

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 96/173 (55%), Gaps = 15/173 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 3   MNQFKPXFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 62

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 63  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 121

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWN 202
            I+     DNFW M ETGPCGPCSE+ FD+           + +    +EIWN
Sbjct: 122 HILPGNMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWN 173


>gi|255761630|gb|ACU32858.1| alanyl-tRNA synthetase [Dicranosepsis revocans]
          Length = 174

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/173 (43%), Positives = 97/173 (56%), Gaps = 15/173 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK IF G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPIFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT    L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTXRLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWN 202
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIWN
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWN 174


>gi|259015923|gb|ACV89245.1| alanyl-tRNA synthetase [Ctenocephalides felis]
          Length = 214

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 81/215 (37%), Positives = 117/215 (54%), Gaps = 19/215 (8%)

Query: 89  FFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLW 140
           FFEMLGN+SFG YFK+     AW+LLT+ F L   RLY+T +          DEE  ++W
Sbjct: 1   FFEMLGNWSFGDYFKKEICAWAWELLTQVFKLPADRLYVTYFGGDEASGLAADEECKQIW 60

Query: 141 KKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEI 200
             + G+ +  ++     DNFW M ETGPCGPCSE+ +D+           + +    +EI
Sbjct: 61  LDL-GVLSSHVLPGNMKDNFWEMGETGPCGPCSELHYDRIGNRD-VPHLVNMDDPDVLEI 118

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ-- 258
           WNLVF+Q+ ++   E  +LPK  ID GMG ER+ +V+Q K  NYD DLF  L +A +   
Sbjct: 119 WNLVFIQYNRETDGELKLLPKKHIDCGMGFERLVSVIQNKRANYDTDLFGPLFEAIQSGT 178

Query: 259 -------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
                    G   +    + +RV+ DH R+ +  +
Sbjct: 179 GAPPYQGRIGKDDKDGIDMAYRVLADHARTITIAL 213


>gi|169835836|ref|ZP_02869024.1| alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 326

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 124/331 (37%), Positives = 180/331 (54%), Gaps = 12/331 (3%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + I+   R+ +  NH+ATH+LH  L   LG+HV Q+GS +  + LRFD +H + I    +
Sbjct: 1   MKINADRRKDIQRNHTATHILHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAIEPEMI 60

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           + IE  VNDII  NL V     N EDA   GA AL   KY D VRVV ++       S  
Sbjct: 61  EKIEKAVNDIILSNLKVKIDFENIEDAKKRGAMALFSDKYGDVVRVVEIDGY-----SIE 115

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGG HV STGEI L  I SES I +G RRI A TG  +  ++   +EKL  +A  LK  
Sbjct: 116 LCGGAHVKSTGEIGLFNIESESGIASGTRRITATTGHASLKYVNNLEEKLSKVAGMLKTD 175

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSK 807
             NVV  VE+   E + +   + + + +L   ++     +  +I  V  +       D  
Sbjct: 176 GKNVVDVVEKYIAEAKNIVKEYEQLQTKLVKYEINELLENVDEINGVKVLKAAFENKDVN 235

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
           ELK ++D  ++K+QSGII+L G +   KA  ++ VT+DL+ +  A ++ +  A  + GG 
Sbjct: 236 ELKEIVDRGKEKLQSGIIIL-GTNNGGKAIFVVGVTKDLISKVKAGEIVK-VAAQVAGGN 293

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGRP  AQ+GG +GN   +A+     F+ +
Sbjct: 294 GGGRPDFAQAGGKDGNAVKEAVDKAFEFVNE 324


>gi|183011980|gb|ACC37919.1| alanyl-tRNA synthetase [Themira leachi]
          Length = 173

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/175 (41%), Positives = 101/175 (57%), Gaps = 15/175 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK 
Sbjct: 1   FLGTADPNSEMSKWVRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKR 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +        + D E  ++W ++ G+  + I+  + 
Sbjct: 61  EICTWAWEFLTERLCLPKDRLYVTYFGGDAASGLEPDLECKQMWTEL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRE 173


>gi|183011924|gb|ACC37891.1| alanyl-tRNA synthetase [Lasionemopoda hirsuta]
          Length = 170

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 74/172 (43%), Positives = 97/172 (56%), Gaps = 15/172 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTXL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIW 201
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIW
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIW 170


>gi|183011922|gb|ACC37890.1| alanyl-tRNA synthetase [Dicranosepsis unipilosa]
          Length = 170

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 100/172 (58%), Gaps = 15/172 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICTWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQF 208
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQY 170


>gi|299561730|gb|ADJ36937.1| alanyl-tRNA synthetase [Thecophora occidensis]
          Length = 173

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 102/175 (58%), Gaps = 15/175 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWTRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
              + AW+ LT    L    LY+T +          D E  +LW ++ G++ D I+  T 
Sbjct: 61  EICRWAWEFLTVCLKLPIDNLYVTYFGGDSQCSLPPDLECKQLWIEL-GITPDHIVAGTM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
            DNFW M ETGPCGPCSEI FD+           +++    +EIWNLVF+QF ++
Sbjct: 120 KDNFWEMGETGPCGPCSEIHFDRI-GGRNVPELVNKDDPDVLEIWNLVFIQFNRE 173


>gi|229553797|ref|ZP_04442522.1| possible alanine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|229312820|gb|EEN78793.1| possible alanine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
          Length = 476

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 144/505 (28%), Positives = 230/505 (45%), Gaps = 38/505 (7%)

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
           M +         +D+  F + +  QR RAR       S  ++     L +    ++F G+
Sbjct: 1   MTNEYAEDEGLKVDMAGFKKNMAAQRDRARKARGDRQSMGSQDTV--LMDITTPSKFTGW 58

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
             L                          + ++AIV   ++ +E  +GQ  +++FD+TPF
Sbjct: 59  TELDHKH----------------------ATLQAIVVDDQLQDEVSTGQ-AQLIFDETPF 95

Query: 521 YAEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           YAE GGQ+ D G        +       + A      H +  +G L       L++D   
Sbjct: 96  YAEMGGQVADHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKGKLTKGQPYWLSVDRLR 155

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+++S+NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  V
Sbjct: 156 RKKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIV 215

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I   LP+  + M   +A   GA A+ G KY D VR+VS+     G ++    GGTH 
Sbjct: 216 NQKIWDALPITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHP 270

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
           ++T  + L  I SES I AG+RR+EA+T + A  +L  Q + LK  A  LK+ Q  NV  
Sbjct: 271 TNTNALGLFKITSESGIGAGVRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNVPS 330

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVM 813
           +V ++  + +  Q   A  + +L  +  +        +     +   +      EL+ + 
Sbjct: 331 KVTQLQADLKTEQKTVAGLQAKLAAQAAAGIFDHAETVGGFKLIDKQVQVAGMNELRQLA 390

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K  S I++L   +  K   ++            A DL +  A  +GGGG GGRP 
Sbjct: 391 DEWKTKQASDILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVGGGG-GGRPD 449

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
           MAQ+GG        A+A   + + +
Sbjct: 450 MAQAGGKKPAGIPAALAEAKNVIGQ 474


>gi|299561768|gb|ADJ36956.1| alanyl-tRNA synthetase [Rachispoda sp. JFG-2010]
          Length = 174

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/176 (43%), Positives = 102/176 (57%), Gaps = 15/176 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +        + D E  + W  + GL A+ +I  + 
Sbjct: 61  EICTWAWEFLTERLHLPKDRLYVTYFGGDAASGLEPDLECKQYWLDL-GLLAEHVIPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN 212
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++ 
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNRET 174


>gi|258616276|ref|ZP_05714046.1| alanyl-tRNA synthetase [Enterococcus faecium DO]
          Length = 147

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/151 (47%), Positives = 93/151 (61%), Gaps = 8/151 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLS 147
               D  +LY+TVY +D EA ++W +  GL 
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLP 147


>gi|183011910|gb|ACC37884.1| alanyl-tRNA synthetase [Dicranosepsis distincta]
          Length = 173

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 15/172 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK IF G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPIFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWMDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIW 201
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIW
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIW 173


>gi|299561770|gb|ADJ36957.1| alanyl-tRNA synthetase [Strongylophthalmyia angustipennis]
 gi|299561772|gb|ADJ36958.1| alanyl-tRNA synthetase [Toxomerus marginatus]
          Length = 171

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 98/173 (56%), Gaps = 15/173 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L   RLY+T +  DE        E  ++W  + GL  + ++  + 
Sbjct: 61  EICTWAWEFLTERMKLPADRLYVTYFGGDEKSGLAPDSECRQIWLDL-GLKPEHVLPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ 
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYN 171


>gi|183011940|gb|ACC37899.1| alanyl-tRNA synthetase [Platytoxopoda sp. RM-2008]
          Length = 170

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 100/172 (58%), Gaps = 15/172 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICTWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQF 208
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQY 170


>gi|18652852|dbj|BAB84685.1| Ala-tRNA synthetase [Methylobacillus glycogenes]
          Length = 315

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 114/320 (35%), Positives = 171/320 (53%), Gaps = 13/320 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             +HSATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T+ E++ IE+ VN  I
Sbjct: 1   MRHHSATHLMHKALREVLGGHVQQKGSLVDSDKTRFDFSHNAPVTAEEIRRIEEIVNTEI 60

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N P   R+M  ++A  +G   L G KY D VRV+ +        S  LCGGTHVS TG
Sbjct: 61  LANAPTQARVMPIDEAQKTGTMMLFGEKYGDEVRVIDIGS------SRELCGGTHVSRTG 114

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  +VSES + AG+RRIEA TG  A  H+  Q + L   A+  K     + G + + 
Sbjct: 115 DIGLFKVVSESGVAAGVRRIEAATGDVALHHIQQQQQLLADAAASFKAPAAELAGEISQT 174

Query: 764 WEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            ++ + L+   A+ K +L              +  V  ++  +   D+  L+  MD L+ 
Sbjct: 175 LDQLKSLEKELARLKSKLASSQGDELASQAVDVDGVKVLAATLEGADANTLRETMDKLKD 234

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K+++  I+L  ++ + K SV   VT D L +  A +L    A  + GG GGG+P MA +G
Sbjct: 235 KLKTAAIVLASVNGD-KVSVAAGVTADTLAKVKAGELVNFVAAQV-GGKGGGKPDMAMAG 292

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G +  K  QA+  VA ++ +
Sbjct: 293 GTDAGKLPQALVSVAGWVGE 312


>gi|147677396|ref|YP_001211611.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|146273493|dbj|BAF59242.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 330

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 119/333 (35%), Positives = 191/333 (57%), Gaps = 13/333 (3%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +D   R     NHSATHLLH AL  +LG HV+Q GS + P+ LRFD TH    T  
Sbjct: 1   MTARVDPARRAATCRNHSATHLLHKALKEVLGGHVNQAGSLVEPERLRFDFTHYAAATPE 60

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           EL+ +E+ VN ++   LPV     +  +A   GAAAL G KY +RVRVV +     G  S
Sbjct: 61  ELQKVEELVNRMVLSALPVEAFETSLAEARKMGAAALFGEKYGERVRVVKM-----GDFS 115

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTH+ +T E+ L  ++ ESS+ AG+RRIEA+TG+ A S++  ++E+L  +A  +K
Sbjct: 116 LELCGGTHLRNTAEVGLFKLLGESSVGAGLRRIEAVTGEGALSYVKAKEEQLAEIARLVK 175

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD 805
            +    V RVE + +  R L+  +   + +L    +        ++  V  ++   +  D
Sbjct: 176 AAPHEAVRRVEGLLQTVRDLEAENEALQARLARYQVQDLMDRLREVKGVKVLAGQAAAPD 235

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLG 864
              L+ ++D L+ ++ SG+I+L G + E + +++  VT+DL+++  +A  L +  A V+G
Sbjct: 236 MDSLRGMVDLLRDRVGSGVIVL-GSAGENRVNLVAAVTKDLVEKGLHAGKLVKELAPVVG 294

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGG GGRP MAQ+GG + ++  +A+      ++
Sbjct: 295 GGG-GGRPEMAQAGGKDPSRLKEALEKTYKAVE 326


>gi|183011982|gb|ACC37920.1| alanyl-tRNA synthetase [Themira lucida]
 gi|183011988|gb|ACC37923.1| alanyl-tRNA synthetase [Themira pusilla]
          Length = 172

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 99/165 (60%), Gaps = 10/165 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+
Sbjct: 8   KWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTE 67

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M ETGP
Sbjct: 68  RLCLPKDRLYVTYFGGDVASGLEPDLECKQIWTEL-GLKPEHILPGSMKDNFWEMGETGP 126

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           CGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 127 CGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREAD 170


>gi|183011880|gb|ACC37869.1| alanyl-tRNA synthetase [Lopa convexa]
          Length = 173

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/166 (45%), Positives = 98/166 (59%), Gaps = 10/166 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT 
Sbjct: 10  KYIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCAWAWEFLTV 69

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +  DE        E  ++W ++ GL  + II     DNFW M ETGP
Sbjct: 70  RMKLPKERLYVTYFGGDESGGLDADIECRQIWLQL-GLQPEHIIPGNIKDNFWEMGETGP 128

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
           CGPCSE+ FD+           + +    +EIWNLVF+QF ++   
Sbjct: 129 CGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREQNG 173


>gi|299561736|gb|ADJ36940.1| alanyl-tRNA synthetase [Dalmannia vitiosa]
          Length = 183

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 99/185 (53%), Gaps = 15/185 (8%)

Query: 50  FTGQEKPVY-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F     P         V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK 
Sbjct: 1   FLETVDPNSEMFKLVRVVNTQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGNWSFGDYFKL 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
              + AW+ L    +L +  LY+T +  DE        E  ++W    GL    I+  + 
Sbjct: 61  EICKWAWEFLIDSLELPKDNLYVTYFGGDEKSGLDPDLECKQIWLN-IGLDVSHIVPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M + GPCGPCSEI FD+           +++    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGDIGPCGPCSEIHFDRI-GGRSVPELVNKDDPDVLEIWNLVFIQFNREKDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 RPLPK 183


>gi|183011958|gb|ACC37908.1| alanyl-tRNA synthetase [Sepsis indica]
          Length = 167

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 73/165 (44%), Positives = 98/165 (59%), Gaps = 10/165 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+
Sbjct: 5   KWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTE 64

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +  DE        E  ++W  + GL  + I+     DNFW M ETGP
Sbjct: 65  RLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGP 123

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           CGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 124 CGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREAD 167


>gi|164503962|gb|ABY59291.1| alanyl-tRNA synthetase [Afroestricus chiastoneurus]
          Length = 166

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 101/168 (60%), Gaps = 10/168 (5%)

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT+   L 
Sbjct: 1   CNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTERLKLP 60

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPCGPCS
Sbjct: 61  SDRLYVTYFGGNEQAGLEPDLECKNIWLNL-GVKPEHILPGSMKDNFWEMGETGPCGPCS 119

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           E+ FD+           + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 120 ELHFDRI-GGRSVPELVNMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 166


>gi|183011904|gb|ACC37881.1| alanyl-tRNA synthetase [Dicranosepsis cf. parva RM-2008]
          Length = 173

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 74/172 (43%), Positives = 96/172 (55%), Gaps = 15/172 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPXFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIW 201
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIW
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIW 173


>gi|183011976|gb|ACC37917.1| alanyl-tRNA synthetase [Themira biloba]
          Length = 167

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 74/165 (44%), Positives = 98/165 (59%), Gaps = 10/165 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+
Sbjct: 5   KWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTE 64

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +  DE        E  ++W ++ GL  + I+     DNFW M ETGP
Sbjct: 65  RLCLPKDRLYVTYFGGDEASGLEPDLECKQIWTEL-GLKPEHILPGNMKDNFWEMGETGP 123

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           CGPCSE+ FD+           + +    +EIWNLVF+QF ++  
Sbjct: 124 CGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREAD 167


>gi|183011978|gb|ACC37918.1| alanyl-tRNA synthetase [Themira flavicoxa]
          Length = 169

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/163 (44%), Positives = 99/163 (60%), Gaps = 10/163 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+
Sbjct: 8   KWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTE 67

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M ETGP
Sbjct: 68  RLCLPKDRLYVTYFGGDVASGLEPDLECKQIWTEL-GLKPEHILPGSMKDNFWEMGETGP 126

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           CGPCSE+ FD+           + +    +EIWNLVF+Q+ ++
Sbjct: 127 CGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNRE 168


>gi|292558549|gb|ADE31550.1| Alanyl-tRNA synthetase, class IIc [Streptococcus suis GZ1]
          Length = 397

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 133/406 (32%), Positives = 206/406 (50%), Gaps = 18/406 (4%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVH 556
                E    GQ   +VFDQTPFYAE GGQ+ D G        +  T +  +KA      
Sbjct: 3   DNARTEAVSEGQ-ALLVFDQTPFYAEMGGQVADHGFVKNATGDIVATVIDVQKAPNGQPL 61

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           H +     +    +  L I+ + R+ +  NH+ATHLLH AL  I+G H +Q GS    D 
Sbjct: 62  HTVELSASISVGQTYTLEIETKRRKGVEKNHTATHLLHAALHNIIGEHATQAGSLNEQDF 121

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           LRFD TH + +T+ EL+ IE+ VN+ I   +PVVT   + + A   GA AL G KY   V
Sbjct: 122 LRFDFTHFEAVTAEELRRIEEEVNEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEV 181

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVV++     G +S  LCGGTHV +T EI +  I+ E  I +G RRI A+TG+ A     
Sbjct: 182 RVVTI-----GDYSVELCGGTHVGNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFLAYR 236

Query: 737 GQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHK 790
            Q++ LK +A+ +K  Q   V  +VE + ++ R LQ  +A  K +           +   
Sbjct: 237 DQEDALKEVAATIKSPQIKEVPNKVESLAQQVRDLQKENAALKEKAAAAAAGDVFKNVKD 296

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
              + +++  +   D+  L++  D  ++K  S +++LV    +K   ++   + D     
Sbjct: 297 ANGIRYIASQVQVSDAGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKSSD----V 352

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +A +L ++ A ++  G GGG+P MA +GG + +     +  VA  L
Sbjct: 353 HAGNLIKVLAPIVA-GRGGGKPDMAMAGGSDASAIQTLLNSVADNL 397


>gi|153810791|ref|ZP_01963459.1| hypothetical protein RUMOBE_01175 [Ruminococcus obeum ATCC 29174]
 gi|149833187|gb|EDM88269.1| hypothetical protein RUMOBE_01175 [Ruminococcus obeum ATCC 29174]
          Length = 153

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/144 (50%), Positives = 94/144 (65%), Gaps = 6/144 (4%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M    V+ +R  FL+F +  GH ++ S SL+P  D +L+  N+GM P K  FTG EKP  
Sbjct: 1   MKKYGVNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEKPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             V+T QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+  
Sbjct: 61  TRVSTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKK 142
            LD  RLY +VY +D+EAF +W K
Sbjct: 117 GLDANRLYPSVYQDDDEAFDIWNK 140


>gi|183011936|gb|ACC37897.1| alanyl-tRNA synthetase [Palaeosepsis pusio]
          Length = 162

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/164 (45%), Positives = 99/164 (60%), Gaps = 10/164 (6%)

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L + RL
Sbjct: 1   KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLGLPKDRL 60

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  DE        E  ++W  + GL  + I+     DNFW M ETGPCGPCSE+ F
Sbjct: 61  YVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGPCGPCSELHF 119

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           D+           + +    +EIWNLVF+Q+ ++      +LPK
Sbjct: 120 DRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREQDSSLKLLPK 162


>gi|183011900|gb|ACC37879.1| alanyl-tRNA synthetase [Australosepsis niveipennis]
 gi|183011962|gb|ACC37910.1| alanyl-tRNA synthetase [Sepsis neocynipsea]
          Length = 168

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 94/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+     DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 HILPGNMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLE 168


>gi|183011974|gb|ACC37916.1| alanyl-tRNA synthetase [Themira arctica]
          Length = 166

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 99/165 (60%), Gaps = 10/165 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+
Sbjct: 3   KWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTE 62

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M ETGP
Sbjct: 63  RLCLPKDRLYVTYFGGDVASGLEPDLECKQMWTEL-GLKPEHILPGSMKDNFWEMGETGP 121

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           CGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 122 CGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREAD 165


>gi|183011956|gb|ACC37907.1| alanyl-tRNA synthetase [Sepsis fulgens]
 gi|183011964|gb|ACC37911.1| alanyl-tRNA synthetase [Sepsis orthocnemis]
 gi|183011970|gb|ACC37914.1| alanyl-tRNA synthetase [Sepsis violacea]
          Length = 168

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLE 168


>gi|183011954|gb|ACC37906.1| alanyl-tRNA synthetase [Sepsis flavimana]
          Length = 168

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICTWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLE 168


>gi|205374234|ref|ZP_03227033.1| alanyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 153

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/156 (44%), Positives = 94/156 (60%), Gaps = 8/156 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     + IR  +L+FFQ+ GH + PS+SL+P  DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTGAQIRQMYLDFFQEKGHSVEPSASLVPHEDPTLLWINSGVATLKKYFDGSVVPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIDWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKII 152
               D  +L +TV+ ED EA+ +WK   G+    + 
Sbjct: 117 WIGFDPEKLSVTVHPEDHEAYDMWKNDIGVPESVLF 152


>gi|183011968|gb|ACC37913.1| alanyl-tRNA synthetase [Sepsis thoracica]
          Length = 168

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 94/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEXSGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+     DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 HILPGNMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLE 168


>gi|183011948|gb|ACC37903.1| alanyl-tRNA synthetase [Sepsis biflexuosa]
          Length = 168

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEGSGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLE 168


>gi|148645076|gb|ABR01062.1| AlaS [uncultured Geobacter sp.]
          Length = 140

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/140 (56%), Positives = 98/140 (70%), Gaps = 2/140 (1%)

Query: 73  KHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE 132
           KHNDL+ VGRT RHHTFFEMLGNFSFG YFK +AI  AW+ LT E  L + RLY+TVY +
Sbjct: 1   KHNDLEKVGRTARHHTFFEMLGNFSFGDYFKTQAIAFAWEFLTVELGLSKDRLYVTVYQD 60

Query: 133 DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS-- 190
           D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G     G P    
Sbjct: 61  DDEAAAIWHEQEGVPVERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGPGTGCGSPDCAV 120

Query: 191 SEEGERYIEIWNLVFMQFEQ 210
             + +RY+EIWN VFMQF +
Sbjct: 121 GCDCDRYMEIWNNVFMQFNR 140


>gi|299561774|gb|ADJ36959.1| alanyl-tRNA synthetase [Campiglossa pygmaea]
          Length = 169

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 99/171 (57%), Gaps = 15/171 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +   T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWVRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT   +L + RLY+T +        + D E  ++W  + GL  + I+  + 
Sbjct: 61  EMCTWAWEFLTDRMNLPKDRLYVTYFGGDKASGLEPDLECKQMWLDL-GLRPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQ 207
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQ 169


>gi|299561734|gb|ADJ36939.1| alanyl-tRNA synthetase [Dalmannia nigriceps]
          Length = 183

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 75/185 (40%), Positives = 97/185 (52%), Gaps = 15/185 (8%)

Query: 50  FTGQEKPVY-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F     P         V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG +SFG YFK 
Sbjct: 1   FLETVDPNSEMSKLVRVVNTQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGTWSFGDYFKL 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
              + AW+ L     L +  LY+T +  DE        E  ++W    GL    I+  + 
Sbjct: 61  DICKWAWEFLIDSLKLPKDNLYVTYFGGDEKSGLDPDLECKQIWLD-IGLDVSHIVPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M + GPCGPCSEI FD+           +++    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGDIGPCGPCSEIHFDRI-GGRSVPELVNKDDPDVLEIWNLVFIQFNREKNGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 RPLPK 183


>gi|299561756|gb|ADJ36950.1| alanyl-tRNA synthetase [Toxoneura superba]
          Length = 171

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 98/171 (57%), Gaps = 15/171 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +   T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWVRTTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
             I  AW+ LT   +L + RLY+T +        + D E  + W    GL  + II  + 
Sbjct: 61  EIISWAWEFLTDRLELPKDRLYVTYFGGHPESGLEPDLECRQFWID-MGLKEEHIIPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQ 207
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQ 169


>gi|183011990|gb|ACC37924.1| alanyl-tRNA synthetase [Themira putris]
          Length = 173

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/165 (44%), Positives = 97/165 (58%), Gaps = 10/165 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S G YFK      AW+ LT+
Sbjct: 9   KWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSXGDYFKREICTWAWEFLTE 68

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +  DE        E  ++W ++ GL  + I+     DNFW M ETGP
Sbjct: 69  RLCLPKDRLYVTYFGGDEASGLEPDLECKQIWTEL-GLKPEHILPGNMKDNFWEMGETGP 127

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           CGPCSE+ FD+           + +    +EIWNLVF+QF ++  
Sbjct: 128 CGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREAD 171


>gi|183011890|gb|ACC37874.1| alanyl-tRNA synthetase [Archisepsis excavata]
          Length = 161

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/163 (45%), Positives = 98/163 (60%), Gaps = 10/163 (6%)

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L + RLY
Sbjct: 1   CIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLGLPKDRLY 60

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T +  DE        E  ++W  + GL  + I+     DNFW M ETGPCGPCSE+ FD
Sbjct: 61  VTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGPCGPCSELHFD 119

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +           + +    +EIWNLVF+QF ++      +LPK
Sbjct: 120 RI-GGRSVPELVNMDDPDVLEIWNLVFIQFNREADSSLKLLPK 161


>gi|237708798|ref|ZP_04539279.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Bacteroides sp.
           9_1_42FAA]
 gi|229457224|gb|EEO62945.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Bacteroides sp.
           9_1_42FAA]
          Length = 465

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 140/484 (28%), Positives = 231/484 (47%), Gaps = 49/484 (10%)

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +   ++R+          +      W ++KE  G T F+GYD       +   R++  +
Sbjct: 21  KRRRVQRRNAETKERARNAAAVETGDWITIKE--GDTHFVGYDFTEYETSILRYRQIKQK 78

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
              +                             ++V   TPFYAE+GGQ+GDTG  + + 
Sbjct: 79  NQTL----------------------------YQIVLSDTPFYAESGGQVGDTGVIVSEF 110

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             ++I D +K+           ++     ++  +  +D + R   + NHS THLL  AL 
Sbjct: 111 ETIEIIDTKKENNLPIHI---TKKLPEHLDVPTMACVDTEKRAACAANHSCTHLLDEALR 167

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNRE 657
            +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I +N+P+   R +  E
Sbjct: 168 QVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKIRENIPLTEYRNLPIE 227

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL G KY D VRVV          S   CGGTHVS+TG+I ++ I+SESS+ 
Sbjct: 228 KAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVSATGKIGMVRIISESSVA 281

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA-- 775
           AG+RRIEAITG +    +    + L  L +    +  ++   + +  +E   L+      
Sbjct: 282 AGVRRIEAITGVKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRKYIDENAGLKKQVEEF 340

Query: 776 -KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            K K       L  +  +I  V  +  II  + +  +K +   L+ +I + + +++G   
Sbjct: 341 MKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLKGEIPANLFVVIGSVD 399

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K  + ++++EDL+    NA  L R +AK++ GG GGG+PH A +GG N +  + A+  
Sbjct: 400 NNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFATAGGKNPDGLNAAVDK 458

Query: 892 VASF 895
           V   
Sbjct: 459 VIEL 462


>gi|183011920|gb|ACC37889.1| alanyl-tRNA synthetase [Dicranosepsis papuana]
          Length = 168

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK IF G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPIFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICTWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLE 168


>gi|183011950|gb|ACC37904.1| alanyl-tRNA synthetase [Sepsis coprophila]
          Length = 170

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 94/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 3   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 62

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 63  FGDYFKKEICSWAWEFLTERXGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 121

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+     DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 122 HILPGNMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLE 170


>gi|254717706|ref|ZP_05179517.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261219549|ref|ZP_05933830.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|260924638|gb|EEX91206.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
          Length = 117

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 84/117 (71%), Positives = 98/117 (83%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+E
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITRE 117


>gi|183011908|gb|ACC37883.1| alanyl-tRNA synthetase [Dicranosepsis crinita]
          Length = 171

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 94/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPXFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLE 171


>gi|183011960|gb|ACC37909.1| alanyl-tRNA synthetase [Sepsis lateralis]
          Length = 159

 Score =  256 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 71/150 (47%), Positives = 90/150 (60%), Gaps = 14/150 (9%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            I+     DNFW M ETGPCGPCSE+ FD+
Sbjct: 123 HILPGNMKDNFWEMGETGPCGPCSELHFDR 152


>gi|183011930|gb|ACC37894.1| alanyl-tRNA synthetase [Microsepsis furcata]
          Length = 166

 Score =  256 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 93/168 (55%), Gaps = 15/168 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G  +P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTAEPNSEMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197
            I+     DNFW M ETGPCGPCSE+ FD+           + +    
Sbjct: 120 HILPGXMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDV 166


>gi|314981336|gb|EFT25430.1| DHHA1 domain protein [Propionibacterium acnes HL110PA3]
          Length = 473

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 136/492 (27%), Positives = 220/492 (44%), Gaps = 36/492 (7%)

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   + EQR+RA+A S       T++  +S     G T F+GY           
Sbjct: 8   EVDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFLGY----------- 56

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           V + V  I+  G  V  A  G  VEVV  +TPFYAE GGQ  D+
Sbjct: 57  ------------TDLTVDTTVTGIIANGASVSAAEPGAVVEVVLAETPFYAEMGGQDSDS 104

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +GI  ++ DVQ+   G+ V H +   G L     +   ++   R      H+ATH
Sbjct: 105 GIIRANGIDFEVLDVQRPVPGLIV-HKVHLDGDLAVGDRVTALVNPTTRFGACQAHTATH 163

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           ++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+  N  I  +  V  
Sbjct: 164 VIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEERCNVAIHDDFEVTD 223

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M  EDA A GA A+ G KY   VRVV +     G  S  LCGGTHV+STG I +L ++
Sbjct: 224 TQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGTHVASTGRIGMLSLL 279

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  RV ++  + ++ +
Sbjct: 280 GEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLADRVSKLATDLKEAE 339

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS--GI 824
                 + +  +                + ++  +  V   +L+++   ++ +++    +
Sbjct: 340 RKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTLATEIRARVKDRPAV 399

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + L+G + +K A ++            A  L ++    + GG GGG+  MAQ  G +   
Sbjct: 400 VTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGGKDDMAQGAGSDPTG 458

Query: 885 ADQAIAGVASFL 896
            D A+  V + L
Sbjct: 459 IDAALRAVNTEL 470


>gi|50510863|dbj|BAD32417.1| mKIAA1270 protein [Mus musculus]
          Length = 736

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 183/747 (24%), Positives = 298/747 (39%), Gaps = 74/747 (9%)

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           Q  ++      +LP+  +DTGMGLER+  VLQ K + YD DLF  L+ A  Q  G     
Sbjct: 1   QHYREADGSLQLLPQRHVDTGMGLERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYS 60

Query: 267 ---------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LG 316
                         +RV+ DH+R+ S  IADG+ P   G   VLRRI+RRA+ Y+   L 
Sbjct: 61  GRVGAADEGRIDTAYRVVADHIRTLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQ 120

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
                +  L+P +   +GSAYPEL +  + I   +  ++  F  +L RG  ++D  +  L
Sbjct: 121 APPGFLGSLVPVVVETLGSAYPELEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRL 180

Query: 377 GKDEILNGDVAF--KLYDTHGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAH 432
           G  ++   +VA+   L    G+PLD+++ +L  +G+      +    Q   + R++    
Sbjct: 181 GPSDLFPAEVAWSLSLSGNLGIPLDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEA 240

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                          L  +   T                                  + V
Sbjct: 241 DQEDRLCLDVHALEELHRQGIPT-----------TDDSPKYNYTLHPNGDYEFGLCEARV 289

Query: 493 KAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKA 550
             +  + G  V    +GQ+  ++ D+T FYAE GGQ  D G         +       + 
Sbjct: 290 LQLYSETGTAVASVGAGQRCGLLLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQL 349

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G F+ H  +    L+    + L +D   +R     H+ATHLL  AL   LG    Q GS
Sbjct: 350 CGGFILHEAMAPERLQVGDQVQLYVD---KRSRPGKHTATHLLSWALRQTLGPTTEQRGS 406

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            + P+ LRFDV     +T+ +L+++E  V +++ Q+ PV    +             L  
Sbjct: 407 HLNPERLRFDVATQTLLTTEQLRTVESYVQEVVGQDKPVFMEEVPLAHTARIPGLRSLDE 466

Query: 671 KYNDRVRVVS----------VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            Y D VRVVS             +     S  LC GTH+ STG +  L I+ E  +  GI
Sbjct: 467 VYPDPVRVVSVGVPVAHALGPASQAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGI 526

Query: 721 RRIEAITGQ---RARSHLMGQDEKLKSLASFLKVSQGNVVG--RV--------------- 760
            R+ AITG+   +AR       +++++ +  L     ++    R+               
Sbjct: 527 TRLLAITGEQAQQAREVGQSLSQEVEAASERLSQGSRDLPEAHRLSKDIGRLTEVAESAV 586

Query: 761 ------EEIWEEYRKLQLIH--AKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKE 808
                 +E+    + LQ     A RKL+         ++    ++   +   +S      
Sbjct: 587 IPQWQRQELQTTLKMLQRRANTAIRKLEKGQATEKSQELLKRHSEGPLIVDTVSAESLSV 646

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           L  V+  L K+  S  ++L+             V +D    F A   A      +GG   
Sbjct: 647 LVKVVRQLCKQAPSISVLLLSPQPTGSVLCACQVAQDATPTFTAEAWALAVCSHMGGKAW 706

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASF 895
           G R  +AQ  G +    + A+    ++
Sbjct: 707 GSR-VVAQGTG-HTADLEAALGTARAY 731


>gi|183011952|gb|ACC37905.1| alanyl-tRNA synthetase [Sepsis duplicata]
          Length = 165

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/150 (47%), Positives = 91/150 (60%), Gaps = 14/150 (9%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 3   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 62

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 63  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 121

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            I+  +  DNFW M ETGPCGPCSE+ FD+
Sbjct: 122 HILPGSMKDNFWEMGETGPCGPCSELHFDR 151


>gi|183011934|gb|ACC37896.1| alanyl-tRNA synthetase [Ortalischema albitarse]
          Length = 167

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/159 (46%), Positives = 96/159 (60%), Gaps = 10/159 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+
Sbjct: 11  KWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWEFLTE 70

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +        + D E  K+W  + GL  + II  +  DNFW M ETGP
Sbjct: 71  RLCLPKDRLYVTYFGGDKASGLEPDYECQKIWLDL-GLKPEHIIPGSMKDNFWEMGETGP 129

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQ 207
           CGPCSE+ FD+           + +    +EIWNLVF+Q
Sbjct: 130 CGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQ 167


>gi|183011966|gb|ACC37912.1| alanyl-tRNA synthetase [Sepsis punctum]
          Length = 159

 Score =  255 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/150 (47%), Positives = 91/150 (60%), Gaps = 14/150 (9%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            I+  +  DNFW M ETGPCGPCSE+ FD+
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDR 149


>gi|299561726|gb|ADJ36935.1| alanyl-tRNA synthetase [Physocephala marginata]
          Length = 167

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 96/169 (56%), Gaps = 15/169 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMAKWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
              + AW+ LT    L +  LY+T +  DE        E  +LW    G+  D I+  + 
Sbjct: 61  EICKWAWEFLTDNLQLSKENLYVTYFGGDEKNNLEADIECKQLWLD-IGVIPDHIVPGSL 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVF 205
            DNFW M +TGPCGPCSEI FD+           +++    +EIWNLVF
Sbjct: 120 KDNFWEMGDTGPCGPCSEIHFDRI-GGRSVPELVNKDDPDVLEIWNLVF 167


>gi|259015921|gb|ACV89244.1| alanyl-tRNA synthetase [Microchorista philpotti]
          Length = 199

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/177 (42%), Positives = 106/177 (59%), Gaps = 10/177 (5%)

Query: 90  FEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWK 141
           FEMLGN+SFG YFK+   + AW+LLT+ F L + RLY+T +          DEE   LW 
Sbjct: 1   FEMLGNWSFGDYFKKEICEWAWELLTQVFKLPRDRLYVTYFGGDKVSGLQPDEECRDLWI 60

Query: 142 KISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIW 201
           ++ G+    +I  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIW
Sbjct: 61  RL-GVPPTHVIPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPEFVNMDDPDVLEIW 118

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           NLVF+QF +++     +LPK  ID GMG ER+ +V+Q K  NYD D+F  L +A ++
Sbjct: 119 NLVFIQFNRESDASLKLLPKKHIDCGMGFERLVSVIQNKRANYDTDIFMPLFEAIQK 175


>gi|70922133|ref|XP_734281.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56506876|emb|CAH86296.1| hypothetical protein PC301932.00.0 [Plasmodium chabaudi chabaudi]
          Length = 213

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/216 (37%), Positives = 119/216 (55%), Gaps = 22/216 (10%)

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY---------DEDEEAFKLWKKISGLSA 148
           FG YFKE +I+ AWDLLT  + ++  RLY+T +           D EA K+W K   L  
Sbjct: 1   FGDYFKEESIEYAWDLLTNVYKINPDRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDE 58

Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQF 208
            +I+     DNFW MAETGPCGPCSEI +D+           +++    +EIWN+VFMQ+
Sbjct: 59  KRILPFGMKDNFWEMAETGPCGPCSEIHYDRIGNRDA-SDLVNKDDPSVLEIWNIVFMQY 117

Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-------- 260
            +  K+    LP   IDTGMGLER+ ++LQ   +NYD DLF  + +  +++         
Sbjct: 118 NKDEKKNMNKLPSPCIDTGMGLERITSILQNVQSNYDTDLFTPIFKQIKEIFNDIPNYQG 177

Query: 261 --GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
               +        +RVI DH+R ++  I+DG +P+N
Sbjct: 178 KINEEDPDKIDYAYRVISDHIRCATIAISDGCIPSN 213


>gi|259015925|gb|ACV89246.1| alanyl-tRNA synthetase [Halictophagidae sp. BMW-2009]
          Length = 201

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/192 (39%), Positives = 105/192 (54%), Gaps = 10/192 (5%)

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKL 139
           TFFEMLGN+SFG YFK+     AW  L     L++ RLY+T +  D         E  ++
Sbjct: 1   TFFEMLGNWSFGDYFKKEVCHWAWQYLVDVLKLEKDRLYVTYFAGDSKSQLKPDYEVQEI 60

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
           W K  G+    II  +  DNFW M ETGPCGPCSEI FD+           +++    +E
Sbjct: 61  W-KQIGIDDSHIIPGSMKDNFWEMGETGPCGPCSEIHFDRIGN-RNAADLVNQDDPDVLE 118

Query: 200 IWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV 259
           +WNLVF++F + +  +   LPK  +DTGMGLER+ +++Q K +NYD DLF  +       
Sbjct: 119 VWNLVFIEFNRDSSGQLHSLPKKHVDTGMGLERLVSIMQNKRSNYDTDLFTPIFDEICAK 178

Query: 260 TGMKYEGNNIVN 271
           TG +     +  
Sbjct: 179 TGTRPYTGQVGA 190


>gi|330973622|gb|EGH73688.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 118

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/116 (64%), Positives = 83/116 (71%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   
Sbjct: 1   MKSAEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSE 116


>gi|183011902|gb|ACC37880.1| alanyl-tRNA synthetase [Decachaetophora aeneipes]
          Length = 158

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 71/150 (47%), Positives = 91/150 (60%), Gaps = 14/150 (9%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPVFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICTWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQMWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            I+  +  DNFW M ETGPCGPCSE+ FD+
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDR 152


>gi|259015941|gb|ACV89253.1| alanyl-tRNA synthetase [Nannochorista sp. BMW-2009]
          Length = 198

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/176 (42%), Positives = 104/176 (59%), Gaps = 10/176 (5%)

Query: 91  EMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKK 142
           EMLGN+SFG YFK+   + AW+LLT+ F L   RLY+T +          DEE   +W +
Sbjct: 1   EMLGNWSFGDYFKKEICEWAWELLTQVFKLPGDRLYVTYFGGDEASGLQPDEECRDIWIR 60

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWN 202
           + G+ +  +I  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIWN
Sbjct: 61  L-GVPSAHVIPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWN 118

Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           LVF+QF +++      LPK  ID GMG ER+ +V+Q K  NYD D+F  L +A ++
Sbjct: 119 LVFIQFNRESDSSLKSLPKKHIDCGMGFERLVSVIQNKRANYDTDIFMPLFEAIQK 174


>gi|14589381|gb|AAK70636.1|AC091238_14 Putative cytosolic tRNA-Ala synthetase [Oryza sativa Japonica
           Group]
          Length = 694

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 174/648 (26%), Positives = 277/648 (42%), Gaps = 69/648 (10%)

Query: 293 ANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
            NEGR YVLRRI+RRA+ +    L   +     L+      MG  +PEL   +  I++ +
Sbjct: 65  GNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDVFPELKDNEKKIKDII 124

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E F  TL +G          + +     G  AF L+DT+G P+D+ + +    GL+
Sbjct: 125 KDEEESFENTLAKGFEKFKKAADAVKES---GGTDAFVLWDTYGYPVDLTEVMGVDYGLS 181

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EE R +AR      G         S+     AT             ++ 
Sbjct: 182 -VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDANAT-----------AQLRN 222

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                    P        S+VKAI    E V  A   +   +V + T FYAE GGQ+ DT
Sbjct: 223 QGLASTDDSPKYGYKDNDSVVKAIYTGSEYVSAASGDEDFGLVLESTSFYAEQGGQIYDT 282

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL--RTEMSLVLTIDYQNRRQLSINHSA 589
           G   G      +T+VQ  A    +H     +G         +   +DY  R  ++ NH+ 
Sbjct: 283 GKIEGSFGSFNVTNVQVFAGY-VLHMGSFTKGSKALSVGDKVACKVDYARRALIAPNHTC 341

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           TH+L+ AL  ILG HV Q GS + P+ LRFD +H KP+   +L+ IE  VN  I   L V
Sbjct: 342 THMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLRKIESIVNQQIKDKLEV 401

Query: 650 VTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSALCGGT 697
             R +   DA   +G  A+ G  Y D VRVVSV             ++    S+ LCGGT
Sbjct: 402 FAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLANPESKEWLSISTELCGGT 461

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ------------------D 739
           H+ +T E     ++SE  I  G+RRI A+T + A   +                     +
Sbjct: 462 HIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHASDAIKDASSIDSEINEASKLEGAILE 521

Query: 740 EKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQL----IHAKRKLQLNVEDLSCH 789
           + + S+ S L         + ++ GRV ++ +E RK +      + ++ ++  ++     
Sbjct: 522 KTIASIKSKLDTALIPAARKADLKGRVSKLEDELRKAKKKMGEENIQKAVKFAIDAAQTA 581

Query: 790 KIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLL 847
                 F    +   +D+  ++  +  ++ + +   IML    +   KA +   V     
Sbjct: 582 LSEGKRFCVAHVDVGLDTSAIREAVIKVKDQ-KDLPIMLFSTDEATNKAVIYAGVPPSAA 640

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           +    +D    S   L G GGGG+  +AQ  G   ++  +A+      
Sbjct: 641 NSLKVLDWLTPSIAPLKGKGGGGKNGIAQGQGTEASQLKEAMEVATQI 688


>gi|330960443|gb|EGH60703.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 329

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 118/314 (37%), Positives = 175/314 (55%), Gaps = 11/314 (3%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +  + R   S+NHSATHLLH AL  +LG HV Q GS +    LRFD +H + I   
Sbjct: 1   METQVSDEVRNATSLNHSATHLLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPE 60

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L+++ED VN  I +N PVVT   + E A   GA AL G KY D VRV+S+    GG  S
Sbjct: 61  QLRALEDIVNAEIRKNTPVVTEETDIETAKKKGAMALFGEKYGDSVRVLSM----GGEFS 116

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGG H S TG+I L  IVSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K
Sbjct: 117 VELCGGIHASRTGDIALFKIVSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVK 176

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVD 805
            ++ N++ ++  + E  R L+    + + +           +   +  V  ++  +   D
Sbjct: 177 GNRDNLLDKLTAVLERNRLLEKQLEQLQAKAASAAGDDLSSAAQDVKGVKVLATRLDGQD 236

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            K L +++D L+ K+   +I+L  +  E K  ++  VT+DL  +  A DL + +A  +GG
Sbjct: 237 GKALLALVDQLKNKLGRAVILLGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGG 295

Query: 866 GGGGGRPHMAQSGG 879
            G GGRP MAQ GG
Sbjct: 296 KG-GGRPDMAQGGG 308


>gi|183011938|gb|ACC37898.1| alanyl-tRNA synthetase [Paratoxopoda amonane]
          Length = 151

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 92/153 (60%), Gaps = 10/153 (6%)

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   
Sbjct: 1   RVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERLC 60

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGP
Sbjct: 61  LPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSMKDNFWEMGETGPCGP 119

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLV 204
           CSE+ FD+           + +    +EIWNLV
Sbjct: 120 CSELHFDRI-GGRSVPELVNMDDPDVLEIWNLV 151


>gi|330799188|ref|XP_003287629.1| hypothetical protein DICPUDRAFT_151768 [Dictyostelium purpureum]
 gi|325082356|gb|EGC35840.1| hypothetical protein DICPUDRAFT_151768 [Dictyostelium purpureum]
          Length = 208

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/148 (61%), Positives = 110/148 (74%), Gaps = 2/148 (1%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
             FL +F+ N H+ LPSSSLIP ND TL+FTN+GMV FKN FT  E+  Y+ VTT QKCV
Sbjct: 2   RKFLNYFETNKHKRLPSSSLIPHNDSTLLFTNAGMVQFKNQFTALEESKYKLVTTSQKCV 61

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDLDQRRLY 126
           RAGGKHNDL N+G T RHHTFFEML NFSFGGY  FK  +IQ AW+LLTK+F L + RL 
Sbjct: 62  RAGGKHNDLKNIGYTARHHTFFEMLSNFSFGGYNHFKRDSIQHAWNLLTKDFGLPKERLA 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRI 154
           I+V + DEE+  +W+   GLS DKI+ +
Sbjct: 122 ISVLEGDEESASIWRDQIGLSNDKIMDL 149


>gi|168700524|ref|ZP_02732801.1| alanyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 425

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 118/413 (28%), Positives = 187/413 (45%), Gaps = 17/413 (4%)

Query: 496 VQQGEIVEE--AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAE 551
           V   E+V      +G    ++ D+T FYAE GGQ+GDTG     G        +  ++  
Sbjct: 4   VVDNEVVRTGALKAGDSAALLLDRTNFYAEQGGQVGDTGTIDRPGTAGAEFEVEDTQRLG 63

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
              +H   +  G L+    + L      R  +  NH+ATHLL+ AL  +LG HV Q GS 
Sbjct: 64  ETVLHVGALLAGELKVGDRVTLQQTTTRRIDVMRNHTATHLLNLALREVLGHHVEQKGSL 123

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGT 670
           +  +  RFD +H KP+T+ EL+ IE  VN  +  +  V  + M    A    G  A+ G 
Sbjct: 124 VDEEKTRFDFSHDKPVTAEELREIERRVNRQVVLDQVVTAQTMPLAQAKGLPGVRAVFGE 183

Query: 671 KYNDRVRVVSVE----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           KY D VRVV +      +     S   CGGTH+  TG I    IVS+  +  GIRRI A+
Sbjct: 184 KYPDPVRVVMIGAEAPEKVTQDMSVEFCGGTHLPRTGTIGYFKIVSQEGVAKGIRRITAV 243

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-- 784
           TG+ A   +  +   +  LA   +     +  RV  + E+ +  Q    K          
Sbjct: 244 TGKPAYEDVQTRSAIVDELAGTFQCRPDELPTRVGALQEQLKAAQAQLKKAVAAALTGVV 303

Query: 785 ---DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
                S   +     +   +     ++ +++ +D +++K  S  ++       + A ++ 
Sbjct: 304 DELIASAPDVGGSKVVVAKLPDGASNETVRTQIDRVKQKCGSAFVVFGWSEGPESAFLIA 363

Query: 841 VVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +T DL+ +   A D+ +  A V+GGGG GG+P  AQ+GG    K  +A+   
Sbjct: 364 ALTPDLVKKGLKAGDVVKQVAPVIGGGG-GGKPEQAQAGGKEPAKLPEALQKA 415


>gi|229545938|ref|ZP_04434663.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
 gi|229308901|gb|EEN74888.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
          Length = 134

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 64/137 (46%), Positives = 84/137 (61%), Gaps = 8/137 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M     S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELTSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAE 116

Query: 117 EFDLDQRRLYITVYDED 133
               D  +LY+TVY +D
Sbjct: 117 WLAFDPEKLYVTVYPKD 133


>gi|183011888|gb|ACC37873.1| alanyl-tRNA synthetase [Archisepsis diversiformis]
          Length = 154

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 69/146 (47%), Positives = 87/146 (59%), Gaps = 14/146 (9%)

Query: 47  KNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           K  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y
Sbjct: 1   KPFFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIR 153
           FK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+ 
Sbjct: 61  FKKEICTWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILP 119

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQ 179
               DNFW M ETGPCGPCSE+ FD+
Sbjct: 120 GNMKDNFWEMGETGPCGPCSELHFDR 145


>gi|183011914|gb|ACC37886.1| alanyl-tRNA synthetase [Dicranosepsis hamata]
          Length = 149

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 69/146 (47%), Positives = 89/146 (60%), Gaps = 14/146 (9%)

Query: 47  KNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           K +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y
Sbjct: 1   KPVFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIR 153
           FK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+ 
Sbjct: 61  FKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWMDL-GLKPEHILP 119

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQ 179
            +  DNFW M ETGPCGPCSE+ FD+
Sbjct: 120 GSMKDNFWEMGETGPCGPCSELHFDR 145


>gi|289803192|ref|ZP_06533821.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 296

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/243 (37%), Positives = 143/243 (58%), Gaps = 12/243 (4%)

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +NLP+ T IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG
Sbjct: 1   RRNLPIETNIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTG 55

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  I+SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  +
Sbjct: 56  DIGLFRIISESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAV 115

Query: 764 WEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E  R+L+    + K Q   ++          +  V  +   ++ ++ K L++++D L+ 
Sbjct: 116 LERTRQLEKELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKN 175

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           ++ S +I+L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+G
Sbjct: 176 QLGSTVIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAG 233

Query: 879 GPN 881
           G +
Sbjct: 234 GTD 236


>gi|2316010|gb|AAC45550.1| alanyl-tRNA synthetase [Spiroplasma citri]
          Length = 136

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 63/136 (46%), Positives = 86/136 (63%), Gaps = 6/136 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             ++IR  +L+FF+   H  LPS SLIP +DP+L++ NSG+   K  F G++ P    +T
Sbjct: 5   TANAIRKMWLDFFRSKDHYELPSVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+ L   K    
Sbjct: 65  NSQKSIRT----NDIENVGYTARHHTLFEMLGNFSIGDYFKKEAIMYAWEFLIDKKWIGF 120

Query: 121 DQRRLYITVYDEDEEA 136
           D  +LY+T+Y +D+EA
Sbjct: 121 DPAKLYVTIYKDDQEA 136


>gi|213419398|ref|ZP_03352464.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 248

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 143/249 (57%), Gaps = 12/249 (4%)

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 2   IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 56

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 57  ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 116

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+L
Sbjct: 117 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 176

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +      
Sbjct: 177 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPA 234

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 235 ALASVQGWV 243


>gi|222875352|gb|EEF12483.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/250 (32%), Positives = 125/250 (50%), Gaps = 13/250 (5%)

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A A+GA  L G KY D VRV+ +        S  LCGGTHV  TG+I L  +V E
Sbjct: 1   MDIESAKATGAMMLFGEKYGDSVRVLDIGS------SRELCGGTHVQRTGDIGLFKVVGE 54

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG+ A ++L   +  +   A+ LK     +  R+    E+ R L+  
Sbjct: 55  GGVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPTAELNTRIGGALEQIRALEKE 114

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K +L              +  +  ++  +   D+K L+  MD L+ K+ +  I+L 
Sbjct: 115 VAALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRDTMDKLKDKLGAAAIVLA 174

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K  +   VT+    R  A DL    A  + GG GGG+P MA +GG + +    A
Sbjct: 175 AVDGD-KVQLAAGVTKAETSRIKAGDLVNFVASQV-GGKGGGKPDMAMAGGTDASGLPAA 232

Query: 889 IAGVASFLKK 898
           +AGV +++ +
Sbjct: 233 LAGVHAWVAE 242


>gi|183011992|gb|ACC37925.1| alanyl-tRNA synthetase [Themira superba]
          Length = 146

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 67/143 (46%), Positives = 87/143 (60%), Gaps = 14/143 (9%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK 
Sbjct: 1   FLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKR 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +        + D E  ++W ++ GL  + I+  + 
Sbjct: 61  EICTWAWEFLTERLCLPKDRLYVTYFGGDVASGLEPDLECKQIWTEL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQ 179
            DNFW M ETGPCGPCSE+ FD+
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDR 142


>gi|253795706|ref|YP_003038802.1| putative alanyl-tRNA synthetase [Candidatus Hodgkinia cicadicola
           Dsem]
 gi|253740014|gb|ACT34349.1| putative alanyl-tRNA synthetase [Candidatus Hodgkinia cicadicola
           Dsem]
          Length = 701

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 157/308 (50%), Gaps = 25/308 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSL-IPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + + ++  F+   Q+ GH  + SS +     D  L+F NSGM P K +FT  +      +
Sbjct: 4   SFAQLKNAFIGHCQRWGHLSIASSPVKAAAGDNELLFNNSGMAPLKRLFTSGDSVDS-PL 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+CVR GGKHND  N+G + RH +FFEM+G FSFG Y +  AI++ W L+ +   + 
Sbjct: 63  CSVQRCVRLGGKHNDYANIGVSRRHLSFFEMMGAFSFGSYGRRYAIEMVWSLVLR-LGIR 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +R+ +TV   D E +  WK ++G     +       N W + +TG CG C+E+F     
Sbjct: 122 PQRVVVTVGSADSETYAAWKAVAGADCCVVTTYG-EQNVWRVGDTGLCGACTEVFV---- 176

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                          Y E+ N+VF+  E +       L +  +D G+G+ER   V+ +  
Sbjct: 177 ----------VYDSSYWELLNVVFVSHELRADGCVK-LARECVDVGVGVERTLAVINQSF 225

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + Y        I A +      +  +   + R +VDHLR +SF+  +G  PA  G GYVL
Sbjct: 226 DVYKE------IGADDAPLAAAFGTSFGRSLRTVVDHLRCASFVAFEGTAPAATGAGYVL 279

Query: 302 RRIMRRAM 309
           R+++RR++
Sbjct: 280 RKLIRRSV 287


>gi|94272583|ref|ZP_01292152.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1]
 gi|93450079|gb|EAT01436.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1]
          Length = 267

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 92/269 (34%), Positives = 149/269 (55%), Gaps = 11/269 (4%)

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           +E  VN  I  N  + T ++NR++A+ SGAAAL G KY + VRVV+V     G  S  LC
Sbjct: 4   VERLVNVEIRANNSLETAMVNRDEALQSGAAALFGEKYGETVRVVTV-----GEFSKELC 58

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV +TGEI L  I++E+ I A  RRIEA+ G+ A       +++  +LA  LK   G
Sbjct: 59  GGTHVGATGEIGLFRIIAEAGIAASTRRIEAVCGEEALHRCQQLEDQWAALAGRLKCGPG 118

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKEL 809
            + GR++++    ++L+    +   Q +  DL        +I     ++  +     K L
Sbjct: 119 ELAGRIDKLLARQKELERKLTQMASQASGFDLERELSRVREIGGARLLACRVPADSVKTL 178

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           + + D ++ K+ S  I ++    + +A++L +V ++L  R+ A +L +  A ++ GG GG
Sbjct: 179 RELGDKVRDKLGSTGIAVLAAEIDGQAALLALVGKELQGRYKAGELVKQVAALV-GGKGG 237

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GRP MAQ+GG +    DQA+A V   ++K
Sbjct: 238 GRPDMAQAGGGDPAGIDQALAAVPEIVEK 266


>gi|218661202|ref|ZP_03517132.1| alanyl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 113

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 76/104 (73%), Positives = 87/104 (83%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YF+ 
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFRR 104


>gi|183011932|gb|ACC37895.1| alanyl-tRNA synthetase [Nemopoda nitidula]
          Length = 159

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 66/161 (40%), Positives = 88/161 (54%), Gaps = 15/161 (9%)

Query: 52  GQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERA 106
           G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK   
Sbjct: 1   GTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREI 60

Query: 107 IQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTND 158
              AW+ LT+   L + RLY+T +        + D E  ++W  + G+  + I+     D
Sbjct: 61  CSWAWEFLTERLCLPKDRLYVTYFGGDAASGLEPDLECKQMWTDL-GVKPEHILPGNMKD 119

Query: 159 NFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
           NFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 NFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLE 159


>gi|259015957|gb|ACV89261.1| alanyl-tRNA synthetase [Neotyphloceras sp. BMW-2009]
          Length = 153

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 63/153 (41%), Positives = 87/153 (56%), Gaps = 10/153 (6%)

Query: 84  NRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEE 135
           + HHTFFEMLGN+SFG YFK+     AW+LLT  F L   RLY+T +          DEE
Sbjct: 2   SYHHTFFEMLGNWSFGDYFKKEICAWAWELLTGVFKLPGDRLYVTYFGGDEASGLQPDEE 61

Query: 136 AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGE 195
             ++W  + G+    ++  +  DNFW M ETGPCGPCSE+ +D+           + +  
Sbjct: 62  CKQIWLDL-GVLPSHVLPGSMKDNFWEMGETGPCGPCSELHYDRI-GGRDVPHLVNMDDP 119

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
             +EIWNLVF+Q+ ++      +LPK  ID GM
Sbjct: 120 DVLEIWNLVFIQYNRETDSTLKLLPKKHIDCGM 152


>gi|307108974|gb|EFN57213.1| hypothetical protein CHLNCDRAFT_143654 [Chlorella variabilis]
          Length = 524

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 64/118 (54%), Positives = 81/118 (68%), Gaps = 7/118 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
           V+ +R+TF+EFF    H  + SS ++P NDPTL+  N+GM  FK IF G   P       
Sbjct: 15  VARVRSTFVEFFVGKQHTAVSSSPVVPVNDPTLL--NAGMNQFKPIFLGTVDPNSDFAKL 72

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
           +     QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK+ AI  AW+LLT+
Sbjct: 73  KRAANSQKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKKEAISWAWELLTE 130



 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 169/384 (44%), Gaps = 43/384 (11%)

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             +H      G +R   ++   +DY  R ++  NH+ TH+L++AL  +LG HV Q GS +
Sbjct: 138 YVLHLGRRPEGEIRVGEAVTTKVDYARRGRIMPNHTFTHVLNYALRKVLGDHVEQKGSIV 197

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ-NLPVVTRIMNREDAIASGAAALLGTK 671
            PD LRFD +++  + +A+L  +E      +A         +   +    +G  A+ G  
Sbjct: 198 LPDRLRFDFSNNGVVEAAKLAEVEALCQQYLASPQQVYKQEVPLAQAKAINGLRAVFGET 257

Query: 672 YNDRVRVVSVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           Y D VRVVSV              D   +    CGGTH+ ST +     +++E  I  G+
Sbjct: 258 YPDPVRVVSVGRPVEQLVANPDAEDNLSYPIEFCGGTHLDSTAQARAFALLTEEGISKGV 317

Query: 721 RRIEAITGQ-------------RARSH-----LMGQDEKLKSLASFLK------VSQGNV 756
           RRI A+TG+              A        +     ++K+L   +       V +  +
Sbjct: 318 RRIVAVTGEEAEAAIALADQLAAAVEAAGRLPVGEMQGEVKALTQAVSGAVIPTVRKAAL 377

Query: 757 VGRVEEI----WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKS 811
              ++ +     EE +K    + +R +   V+       A   F+   +   +D+K ++ 
Sbjct: 378 AEALQGLTRLILEEQKKAAAANKERAVAAAVDASDAAAAAGQKFLVTRLDVGLDAKAVQE 437

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             +A+QKK  S  +M +  + E KA     V +D+  + +A D  +     LGG G GG+
Sbjct: 438 AWNAIQKKHPSLPVMFL-TAGEDKALAYAGVPQDISKQLSAGDWIKEVLGTLGGRG-GGK 495

Query: 872 PHMAQSGGPNGNKADQAIAGVASF 895
           P  AQ  GP   K D+A+   ASF
Sbjct: 496 PTNAQGTGPEVGKVDEALQAAASF 519


>gi|183011918|gb|ACC37888.1| alanyl-tRNA synthetase [Dicranosepsis olfactoria]
          Length = 148

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 65/131 (49%), Positives = 84/131 (64%), Gaps = 9/131 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+
Sbjct: 9   KWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTE 68

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGP
Sbjct: 69  RLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSMKDNFWEMGETGP 127

Query: 169 CGPCSEIFFDQ 179
           CGPCSE+ FD+
Sbjct: 128 CGPCSELHFDR 138


>gi|259015943|gb|ACV89254.1| alanyl-tRNA synthetase [Panorpa sp. BMW-2009]
          Length = 150

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 66/152 (43%), Positives = 89/152 (58%), Gaps = 10/152 (6%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEA 136
            HHTFFEMLGN+SFG YFK+   + AW+LLT+ F L   RLY+T +          DEE 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKKEICEWAWELLTQVFKLPGDRLYVTYFGGDEASGLQPDEEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
             +W ++ G+ +  +I  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  RDIWIRL-GVPSAHVIPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            +EIWNLVF+QF +++      LPK  ID GM
Sbjct: 119 VLEIWNLVFIQFNRESDSSLKSLPKKHIDCGM 150


>gi|330973619|gb|EGH73685.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 281

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 97/285 (34%), Positives = 156/285 (54%), Gaps = 11/285 (3%)

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD +H + I + +L+++ED VN  I +N  V+T   + + A   GA AL G KY D VRV
Sbjct: 1   FDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMTEETDIDTAKKKGAMALFGEKYGDSVRV 60

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +S+    GG  S  LCGG H S TG+I L  IVSE  + AG+RRIEA+TG  A + L   
Sbjct: 61  LSM----GGEFSVELCGGIHASRTGDIALFKIVSEGGVAAGVRRIEAVTGAAALAWLNSA 116

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIAD 793
           +++LK  A+ +K ++ N++ ++  + E  R L+    + + +           +   +  
Sbjct: 117 EDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQPEQLQAKAASAAGDDLSSAALDVKG 176

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           V  ++  +   D K L +++D L+ K+   +I+L  +  E K  ++  VT+DL  +  A 
Sbjct: 177 VKVLATRLDGQDGKALLALVDQLKNKLGRAVILLGSVH-EDKVVLVAGVTKDLTGQLKAG 235

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           DL + +A  +GG G GGRP MAQ GG +    D A+A    F+++
Sbjct: 236 DLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALDSALALAVPFVEQ 279


>gi|183011984|gb|ACC37921.1| alanyl-tRNA synthetase [Themira minor]
          Length = 144

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 64/131 (48%), Positives = 84/131 (64%), Gaps = 9/131 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+
Sbjct: 5   KWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTE 64

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M ETGP
Sbjct: 65  RLCLPKDRLYVTYFGGDXASGLEPDLECKQIWTEL-GLKPEHILPGSMKDNFWEMGETGP 123

Query: 169 CGPCSEIFFDQ 179
           CGPCSE+ FD+
Sbjct: 124 CGPCSELHFDR 134


>gi|77407177|ref|ZP_00784160.1| alanyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77174212|gb|EAO77098.1| alanyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 164

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 59/135 (43%), Positives = 86/135 (63%), Gaps = 8/135 (5%)

Query: 1   MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYD 131
            FD  + +LY+T Y 
Sbjct: 117 WFDFPKDKLYMTYYQ 131


>gi|290559656|gb|EFD92983.1| Alanine--tRNA ligase [Candidatus Parvarchaeum acidophilus ARMAN-5]
          Length = 675

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 130/651 (19%), Positives = 223/651 (34%), Gaps = 160/651 (24%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTV 64
            I   F +FF K  H  +    ++      + F  + +  F      G  +P    +   
Sbjct: 78  DIWKLFSQFFSKKKHTEIKRYPVVARWRDDIYFVEAAIDDFAPYVIKGTAEPPANPLVVP 137

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
           Q C R     ND++NVG T RH T F M    +F       YF E AI    + L K   
Sbjct: 138 QICFR----FNDINNVGLTGRHLTSFVMAEEAAFNTKEKKTYFDEEAIIYITEWLLKGLK 193

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + +  L                             T  ++ W+ A  G  G C E F   
Sbjct: 194 IKKEEL-----------------------------TFIEDAWAGA--GYAGSCLEYF--- 219

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                             +E+ N V+M++   + +    LP  +ID G GLER + V   
Sbjct: 220 ---------------AGGLELGNQVYMRYIIGSDK-LEDLPTKTIDMGAGLERWSWVSSS 263

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY----------------------------------- 264
               Y+   F  +I   +    + Y                                   
Sbjct: 264 TPTIYEA-TFPKVINFIKNKANVNYSDKDIKEVYQYLGKFDFEKTEFNEALEIIANKTKF 322

Query: 265 -------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                    +++     I DH R+    I DG LP+N G GY LR I+RR++ +     +
Sbjct: 323 NTAEIKKMVSDMRAVYSIADHTRTLLIAIHDGSLPSNVGGGYNLRNILRRSLNFIDSKNW 382

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            +  +  ++     E+ + YPEL   +    E +  E ER+ ++  R   ++   +    
Sbjct: 383 -KIDINDVINEHKKELKTLYPEL--MQTECTEVINKEIERYKESKSRNAKIISEYVKK-- 437

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
               ++ +   KLY++ G+ +D +QD     G   I   +F   +   +           
Sbjct: 438 --GKIDNNEMLKLYESEGVTIDDLQDAAERAGKNIIIPENFYSNINRTK----------- 484

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           +   +K    L +    T+ + YD                            + +  I++
Sbjct: 485 TSEIKKQDTDLIKGIKKTEKLFYDE---------------------ELTESRAKIIKIIK 523

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
                          V+ D+T FY E GGQ  D G    + +         K     + H
Sbjct: 524 PN------------MVILDKTIFYPEMGGQKADNGFIEKNRVT------DVKVLEDVIIH 565

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
            +     ++   ++ + +D + R  L  +H+ATH+++ A   ILG  V QN
Sbjct: 566 YLDNIDGIKEGQNVDIKVDSERRELLRRHHTATHIINQASRRILGQFVYQN 616


>gi|299561752|gb|ADJ36948.1| alanyl-tRNA synthetase [Taeniaptera trivittata]
          Length = 143

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/145 (41%), Positives = 84/145 (57%), Gaps = 10/145 (6%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EA 136
            HHTFFEMLGN+SFG YFK+     AW+ LT+  +L + RLY+T +  DE        E 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLNLPKDRLYVTYFGGDEASGLGPDLEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
            ++W  + GL  + I+  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  KQIWTDL-GLRPEHILPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPK 221
            +EIWNLVF+Q+ ++      +LPK
Sbjct: 119 VLEIWNLVFIQYNREPDGSLSLLPK 143


>gi|297519749|ref|ZP_06938135.1| alanyl-tRNA synthetase [Escherichia coli OP50]
          Length = 214

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 119/212 (56%), Gaps = 7/212 (3%)

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A  L
Sbjct: 1   STELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLL 60

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEV 804
           K    N+  +V  + E  R+L+    + K Q   ++          +  V  +   +S V
Sbjct: 61  KGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGV 120

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           + K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L  + A+ + 
Sbjct: 121 EPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV- 178

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 179 GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 210


>gi|183011972|gb|ACC37915.1| alanyl-tRNA synthetase [Themira annulipes]
          Length = 147

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/147 (43%), Positives = 85/147 (57%), Gaps = 10/147 (6%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFF MLGN+SFG YFK      AW+ LT+   L
Sbjct: 3   VANTQKCIRAGGKHNDLDDVGKDVYHHTFFXMLGNWSFGDYFKXEICTWAWEFLTERLCL 62

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W ++ G+  + I+     DNFW M ETGPCGPC
Sbjct: 63  PKDRLYVTYFGGDEASGLEPDFECKQIWTEL-GVRPEHILPGNMKDNFWEMGETGPCGPC 121

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIE 199
           SE+ FD+           + +    +E
Sbjct: 122 SELHFDRI-GGRSVPELVNMDDPDVLE 147


>gi|293336582|ref|NP_001168420.1| hypothetical protein LOC100382190 [Zea mays]
 gi|223948147|gb|ACN28157.1| unknown [Zea mays]
          Length = 349

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 110/347 (31%), Positives = 175/347 (50%), Gaps = 15/347 (4%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           ++++G +     +  ++D + R+    +H+ATHLL  AL +++GS  SQ GS +  D LR
Sbjct: 1   MIKQGSVEVGKEVDASVDAKLRQGAKAHHTATHLLQSALKSVVGSETSQAGSLVAFDHLR 60

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD    +P++  EL +IE  +N  I     V T++M  +DA  +GA A+ G KY ++VRV
Sbjct: 61  FDFNFHRPLSEEELTTIEALINQWIGNAAHVETKVMALQDAKNAGAIAMFGEKYGEQVRV 120

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V V        S  LCGGTHVS+T EI    I+SE  I +GIRRIEA+ G     ++  +
Sbjct: 121 VEVPGI-----SLELCGGTHVSNTAEIRGFKIISEQGIASGIRRIEAVAGDAFVDYVCAR 175

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-------LQLIHAKRKLQLNVEDLSCHKI 791
           D  ++ L   LKV   +V  RVE I EE R        L+   A  K        +  + 
Sbjct: 176 DNYMRRLCLSLKVKAEDVNSRVETILEELRATRNVASSLRSKIAVLKAASLASRATTVEP 235

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-R 849
            +V  +   + +VD+  LKS  + L   ++    ++L     + K S++   +  +++  
Sbjct: 236 QNVRIVVENMGDVDADGLKSAAEYLIDTLKDPAAVILGSSPGDGKVSLVAAFSPAIVEMG 295

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A       AK+ GGGG GG+P+ AQ+GG        A+    + +
Sbjct: 296 LQAGKFVSGIAKLCGGGG-GGKPNFAQAGGRKPENLPDALEKARAEI 341


>gi|255761632|gb|ACU32859.1| alanyl-tRNA synthetase [Dicranosepsis sp. 'fake revocans']
          Length = 147

 Score =  223 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 64/147 (43%), Positives = 83/147 (56%), Gaps = 10/147 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+
Sbjct: 3   KWVRVANTQKCIRAGGKHNDLDXVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTE 62

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGP
Sbjct: 63  RLALPKDRLYVTYFGGDEASGLEPDYECKQIWMDL-GLKPEHILPGSMKDNFWEMGETGP 121

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGE 195
            GPCSE  FD+           + +  
Sbjct: 122 XGPCSEXHFDRI-GGRSVPELVNMDDP 147


>gi|254470257|ref|ZP_05083661.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211960568|gb|EEA95764.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 284

 Score =  223 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 102/267 (38%), Positives = 161/267 (60%), Gaps = 11/267 (4%)

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           +++ E   +E   N+I+ QN  V T +M  ++AI +GA AL G KY D VRVVS+     
Sbjct: 1   MSAEETTKVEALANEIVLQNGAVETSLMEVDEAIEAGAMALFGEKYGDEVRVVSMGTATT 60

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             + G  +S  LCGGTHV  TG+I L+ +VSE ++ AG+RRIEA+TG  AR +L  QD  
Sbjct: 61  GEKAGKSYSVELCGGTHVKRTGDIGLVTVVSEGAVAAGVRRIEALTGDEARKYLAEQDAL 120

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS------CHKIADVN 795
           ++  A  LKVS  +V  R+  + +E +KL+   A+ K +L +            +     
Sbjct: 121 MRETAGLLKVSAADVPARIAGLLDERKKLERELAEAKKKLAMGGGGSGGDAGVTEAGKFK 180

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            M+ ++  ++ K+LKSV D  +  I SG+++L+  +++ KA++++  T+D+ +  +AVDL
Sbjct: 181 LMARVLEGINPKDLKSVADEGKTAIGSGVVVLISKAEDGKAAIVVGSTKDVSETASAVDL 240

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            R+ +  LGG GGGGRP MAQ+GGP+ 
Sbjct: 241 VRIGSAALGGRGGGGRPDMAQAGGPDA 267


>gi|67922592|ref|ZP_00516098.1| Alanine--tRNA ligase [Crocosphaera watsonii WH 8501]
 gi|67855520|gb|EAM50773.1| Alanine--tRNA ligase [Crocosphaera watsonii WH 8501]
          Length = 269

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/271 (31%), Positives = 134/271 (49%), Gaps = 13/271 (4%)

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IED +N  IA+       +M  E A   GA A+ G KY   VRV+ V        S  LC
Sbjct: 2   IEDLINTWIAEAHDTEIEVMPIETAKEKGAIAMFGEKYGAEVRVIDVPGV-----SMELC 56

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV +T EI L  I+SES I +G+RRIEA+ G     +L  ++  +K L    K+   
Sbjct: 57  GGTHVRNTAEIGLFKIMSESGISSGVRRIEAVAGPAVLEYLKVRETVVKDLCDRFKIKPE 116

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKEL 809
            +  R+  +  E +  Q      K +L +            I +   +   + E+D+K L
Sbjct: 117 EISDRITTLQSELKTTQKELEGVKQELAIAKSDQLLNEAESIGEFKLLVSDMGEMDAKAL 176

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGG 867
           ++  + LQ+K+  G ++L  I  E K S++   ++ +    +  A       AK+ GGGG
Sbjct: 177 QTAAERLQQKLGEGAVILGSIPSEGKVSLVAAFSKKVNKEKQLQAGKFIGQIAKICGGGG 236

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            GGRP++AQ+GG + +K  +A++     LK+
Sbjct: 237 -GGRPNLAQAGGRDPSKLSEALSTAKQQLKE 266


>gi|291533809|emb|CBL06922.1| Alanyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 244

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 127/241 (52%), Gaps = 12/241 (4%)

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D VRVV+V        S  LCGG+HV + G+I +  I+ ES + AG+RR
Sbjct: 6   GAMALFGEKYGDIVRVVTVPGF-----SMELCGGSHVKNIGQIGMFKIIGESGVAAGVRR 60

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEAITG+ A  ++  + + L++  + LK ++ N+  ++  + +E ++++   AK + +  
Sbjct: 61  IEAITGKAAIDYMNAKAKLLQTAITTLKTNESNLCDKIANLLQENKEMKAEIAKVQAERA 120

Query: 783 VEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             D +       +   VN +   I   +  EL++  D L  K     ++++G     K +
Sbjct: 121 KADSNKLLMALKEYNGVNVIVGKIQATNMDELRNNADLLCNKFDKAGVVVLGAILNDKVN 180

Query: 838 VLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++ V +D + R  +A  + +  A ++ GG GGGRP MAQ+GG    K + A A     +
Sbjct: 181 FVVKVNKDGVARGLHAGKIVKEVA-MVTGGNGGGRPDMAQAGGKQPEKLNDAFAKAHEVI 239

Query: 897 K 897
           +
Sbjct: 240 Q 240


>gi|17862882|gb|AAL39918.1| SD01519p [Drosophila melanogaster]
          Length = 540

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 129/544 (23%), Positives = 213/544 (39%), Gaps = 59/544 (10%)

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           +       ID+  +       +  +   S G G+   E+I   +       +  G     
Sbjct: 1   MAEEKSLKIDMDGYEA----AKHNSYVLSQGKGASKIEEINLDVHAISQLQE-QG-VPPT 54

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
              F  +   V  ++         +S + A+  + + V E  SGQK  +V D+T FYAE+
Sbjct: 55  NDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNFYAES 114

Query: 525 GGQLGDTGCAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+ D G  +            +    G ++ H  V  G L+    L L ID + R   
Sbjct: 115 GGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVEGTLKVGDELELHIDVERRWLT 174

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E    +++
Sbjct: 175 MKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQLTKEMV 234

Query: 644 AQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSS 691
            +N+P+  +           G  ++    Y D VRV+S              E G   S 
Sbjct: 235 YKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDSEAGEQTSV 294

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   + +   LK 
Sbjct: 295 EFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQEI-VRLKA 353

Query: 752 SQG-------------NVVGRVEEI---------WEEYRKLQLIHAK------RKLQLNV 783
           +                +V   E+I          +E R L     K      R L+  V
Sbjct: 354 TIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKERALRAAV 413

Query: 784 EDLSCHKIA-------DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGISKE-K 834
                 +         +   +   +   ++ K L + +  ++ ++     M + +  + K
Sbjct: 414 SVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLSVDADSK 473

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K D+ +   +
Sbjct: 474 KIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDEIVQLAS 532

Query: 894 SFLK 897
            F +
Sbjct: 533 KFAQ 536


>gi|322693348|gb|EFY85211.1| alanyl-tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 616

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 151/612 (24%), Positives = 256/612 (41%), Gaps = 71/612 (11%)

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTH 394
           +P+L++ +  I++ L  E++ F KTL RG    +   +       + L+G   ++L DT+
Sbjct: 22  FPDLVKKQKDIKDVLDEEEQAFTKTLSRGERQFEKYSAQASATGSKKLSGANVWRLSDTY 81

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P D+ + +   RGL+  +    +     Q++R  +  +     T  K+      K   
Sbjct: 82  GFPEDLTKLMAEERGLSIDENEVADA---RQKARQDSMVIKNSVQTFAKLNIHQLAKLKE 138

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKV 511
           T                 +              +++ V+ I    E +E        +  
Sbjct: 139 T----------------LQLPPSDDESKFSKGNITARVQLIFTGSEFLESTKGIPPNEPF 182

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            ++ D+T FYAE GGQ+ DTG   IG  +        ++  G  VH+  +E G L+    
Sbjct: 183 GLLLDRTNFYAEQGGQVTDTGRIIIGVDVAEFKVLDVQQLGGYIVHNGYLEYGELKAGDE 242

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +V   D   R+ +  NH+ TH+L+H++  +LG  + Q+GS +  D LRFD +H   IT +
Sbjct: 243 VVSEYDELRRQLIRNNHTGTHILNHSIREVLG-DIDQHGSLVDQDRLRFDFSHKATITIS 301

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE------- 682
           +LK IED  N  I ++  V  +++        +G  A+ G KY + VRVVSV        
Sbjct: 302 DLKVIEDMSNAYIRRDCKVYAKVVELELALRINGIRAVFGEKYINPVRVVSVGIDVDKIL 361

Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                      S  LCGGTHV+ TG I  + IV E+ I +GIRR+ A TG  A +     
Sbjct: 362 EKPENPQWRNFSIELCGGTHVAKTGSIKEMVIVEENGIASGIRRVVAYTGNAAYAAQRDA 421

Query: 739 DEKLKSLASFL-------------------------KVSQGNVVGR----VEEIWEEYRK 769
            E  K +                             KV+   +  +    V+ + +E +K
Sbjct: 422 AEFAKRIDEIDALPFGAEKEAAVKAAARDRENLIISKVTAEGLEAKFTKVVKSVTDEQKK 481

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQ-KKIQSGIIML 827
            Q   +K          +  +  DV F    +    ++K +  V++  +  + +  + + 
Sbjct: 482 RQKAESKAAFDAVTGHFAKVENKDVKFFIGYLPISANAKVIFDVINHYKTNEKEKSVYLF 541

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G + E      + V +DL      A   A   +KV+GG  GG  P   Q  G N  K D
Sbjct: 542 GGSTAEGAVVHGVYVAKDLALKGVTAEAWAAAVSKVVGGKSGGKEPTR-QGRGTNAEKID 600

Query: 887 QAIAGVASFLKK 898
            A+    ++L++
Sbjct: 601 DAVEAARNWLEQ 612


>gi|296115011|ref|ZP_06833655.1| alanyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978473|gb|EFG85207.1| alanyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 266

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 93/260 (35%), Positives = 154/260 (59%), Gaps = 6/260 (2%)

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHV 699
            I +N  V TR M  ++AI  GA AL G KY D VRVVS+   + G    S  LCGGTHV
Sbjct: 2   RIRENTEVTTRHMTPDEAIEQGAMALFGEKYGDEVRVVSMGGPEDGRAAWSIELCGGTHV 61

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             TG+I L  I +E+ + +G+RRIEA+TG+ A +  +  +++L  +A+ ++V+      R
Sbjct: 62  RRTGDIGLFRITAENGVSSGVRRIEAVTGKAAETAAVTTEQRLFQMAAMMRVTPAEAPER 121

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           +  + EE R ++   +  + +L            +A  +F++  + ++  KELK + D+L
Sbjct: 122 LAALLEERRVMERQLSDLQRKLAAGGDGTPKVEDVAGTSFVARNVGDLPPKELKPLADSL 181

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +K+I SG++ LV  + + K S+++ VT D  ++ +AV L R+++  +GG GGGGR  MAQ
Sbjct: 182 RKEIGSGVVALVSTA-DGKGSIVVAVTTDRAEQVDAVALVRIASPAMGGKGGGGRRDMAQ 240

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GGP+ +KA  A+  + + L
Sbjct: 241 AGGPDISKAQAALDAIRAAL 260


>gi|217033202|ref|ZP_03438651.1| hypothetical protein HPB128_150g2 [Helicobacter pylori B128]
 gi|216945066|gb|EEC23778.1| hypothetical protein HPB128_150g2 [Helicobacter pylori B128]
          Length = 367

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 117/381 (30%), Positives = 185/381 (48%), Gaps = 24/381 (6%)

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           V  +TPFYAE GG +GD G    D     +    K   G+      +++ + + +  +  
Sbjct: 3   VVRKTPFYAEGGGAIGDRGTLFKDNEEAALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQ 62

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R +++ +HSATHLL  AL  +LGSHVSQ GS +    LRFD +H+K +   EL+
Sbjct: 63  VSDE--RLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELE 120

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +ED VN  I ++L      M    A   GA AL   KY + VRVVS +       S  L
Sbjct: 121 KVEDLVNAQIFKHLTSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKE-----VSIEL 175

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG HV +TG I    IV ES + +G+RRIEA+ G+        ++++LK+  + LK + 
Sbjct: 176 CGGIHVENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLKNN- 234

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
            +V+  + ++ E  +  Q             DL   KI  V+ +  ++ + D   +K ++
Sbjct: 235 -DVIAGINKLKESVKNSQK-------APVSMDLPIEKIHGVSLVVGVVEQGD---IKEMI 283

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D L+ K +  + M+    + ++ ++   V         A   A   A++L GG GGGR  
Sbjct: 284 DRLKSKHERLLAMVF-KKENERITLACGVKNAP---IKANAWANEVAQIL-GGKGGGRDD 338

Query: 874 MAQSGGPNGNKADQAIAGVAS 894
            A +GG +  K   A+    +
Sbjct: 339 FASAGGKDTEKLQAALNLAKN 359


>gi|300214775|gb|ADJ79191.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 423

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 150/448 (33%), Positives = 240/448 (53%), Gaps = 32/448 (7%)

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSF 284
           MGLER+ +V Q    N++ DLF  +I+ + +++  K  G N    V+ +VI DH R+ +F
Sbjct: 1   MGLERVVSVFQHARTNFETDLFLPIIEKTAELSTGKKYGENAEADVSFKVIADHARAVTF 60

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M SAYPE+++  
Sbjct: 61  AIGDGALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQA 120

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQ 402
             IE+ ++ E++RF  TL  G+ LLD +++   ++  + L G   FKLYDT+G PL++ +
Sbjct: 121 EFIEKVIKMEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTK 180

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +     GL  +D   FN+ +E+Q++RARA      S   +     L +    ++++GY  
Sbjct: 181 EYANDEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL--LTDITTPSEYVGYHE 237

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L+                        + ++K I+   E+V+   +  + +V+FD+TPFYA
Sbjct: 238 LK-----------------------ANGVLKDIIIDNELVDTVPADSRAQVIFDKTPFYA 274

Query: 523 EAGGQLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ+ D G        +    +  + A      H I     +  E +  L +D     
Sbjct: 275 EMGGQVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKEMTRENTYSLEVDVAFHN 334

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH+ATHLL  AL  +LGSH  Q GS + P  LRFD T+   +T+ +LK IED VN 
Sbjct: 335 KVKKNHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIEDIVNA 394

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLG 669
            I +N+ V T + ++E A   G   L+ 
Sbjct: 395 KIWENIQVETVVTDKESAEKDGCYCLIW 422


>gi|262301383|gb|ACY43284.1| ala-tRNA synthetase [Peripatus sp. 'Pep']
          Length = 235

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+Q+ ++N     +LPK  I
Sbjct: 1   ETGPCGPCSEIHYDRI-GGRNAASFVNMDDPDVLEIWNLVFIQYNRENDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMG ER+ +V+Q K +NYD D+F  L  A ++ TG +               + +RV+
Sbjct: 60  DCGMGFERLVSVIQNKNSNYDTDIFVPLFDAIQKGTGTRPYEGKVGNEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L         L+  +   +G
Sbjct: 120 ADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNAPPGFFGSLVHVVVNLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            A+PEL +   ++ + +  E+ +F KTL RG  LL+  +  LG   IL GDVA++L
Sbjct: 180 DAFPELKKDPEMVIDIINEEEVQFLKTLARGRRLLERTVDKLGNCNILPGDVAWRL 235


>gi|262301343|gb|ACY43264.1| ala-tRNA synthetase [Eurytemora affinis]
          Length = 236

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 10/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI +D+           + +    +EIWNLVFMQ+ ++  +    LP   I
Sbjct: 1   DTGPCGPCSEIHYDRIGGGRDAAHLVNMDDPDVLEIWNLVFMQYNREQDKSLKQLPNKHI 60

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVI 275
           D GMG ER+ +V+Q+K +NYD DLF    Q  +  TG++               + +RV+
Sbjct: 61  DCGMGFERLVSVVQDKRSNYDTDLFLPFFQHIQAGTGVRAYAGRVGAEDTDGIDMAYRVL 120

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   LG        L+  +   +G
Sbjct: 121 ADHARTLTIALSDGGRPDNVGRGYVLRRILRRGVRYASEKLGAKPGFFASLVHTVVQVLG 180

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + + +  E+ +F KTL RG  LLD  +S L   + L GD+A++L
Sbjct: 181 ETFPEVKKDPQTVIDIINEEETQFLKTLSRGQKLLDRTISKLEGAKELPGDIAWRL 236


>gi|299561732|gb|ADJ36938.1| alanyl-tRNA synthetase [Zodion cinereum]
          Length = 126

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/123 (48%), Positives = 78/123 (63%), Gaps = 9/123 (7%)

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ L     + +  
Sbjct: 1   QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICLWAWEFLVCSLQIPEDN 60

Query: 125 LYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LYIT +  DE        E  ++W    G+ +D I+  +  DNFW M +TGPCGPC EI 
Sbjct: 61  LYITYFGGDEKSDLAPDVECKQIWLD-IGVPSDHIVPGSMKDNFWEMGDTGPCGPCCEIH 119

Query: 177 FDQ 179
           +D+
Sbjct: 120 YDR 122


>gi|262301347|gb|ACY43266.1| ala-tRNA synthetase [Euperipatoides rowelli]
          Length = 235

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/236 (38%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           + +    +EIWNLVF+QF ++N     +LPK  I
Sbjct: 1   DTGPCGPCSEIHFDRI-GGRDASHLVNMDDPNVLEIWNLVFIQFNRENDGVLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVI 275
           D GMG ER+ +V+Q KT+NYD D+F  L +A ++           G        + +RV+
Sbjct: 60  DCGMGFERLISVVQNKTSNYDTDVFMPLFEAIQKGTGARPYEGKVGSDDVDGTDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L  T      L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNATPNFFASLVNVVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            A+PEL +   ++ + +  E+ +F KTL RG  LL+  +  LG   IL GD+A++L
Sbjct: 180 DAFPELKKDPQMVMDIINEEESQFLKTLTRGRRLLERTICKLGTSSILPGDLAWRL 235


>gi|37573979|gb|AAH58620.1| Aars protein [Mus musculus]
          Length = 507

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 126/486 (25%), Positives = 204/486 (41%), Gaps = 54/486 (11%)

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L  +    +            +     + V A+ ++   V+E V+GQ+  VV D+T FYA
Sbjct: 17  LEATDDSPKY-NYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTCFYA 75

Query: 523 EAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           E GGQ+ D G  +        + + T    +  G +V H     G L+    + L ID  
Sbjct: 76  EQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKVGDQVRLFIDEP 135

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  E+ 
Sbjct: 136 RRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAEEI 194

Query: 639 VNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YEDG 686
           VN +I    PV T+           G  A+    Y D VRVVS+               G
Sbjct: 195 VNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCGPAG 254

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
            + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   KSL+
Sbjct: 255 SLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKKSLS 314

Query: 747 SF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           +    +K       +V   + ++ E        +++K +     + L+  ++DL     A
Sbjct: 315 AMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRASKA 374

Query: 793 DVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           DV                     +  + S   +K L   +   +        ML  +  E
Sbjct: 375 DVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVDNE 434

Query: 834 -KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A+  
Sbjct: 435 AGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEALQL 493

Query: 892 VASFLK 897
             SF +
Sbjct: 494 ATSFAQ 499


>gi|183011986|gb|ACC37922.1| alanyl-tRNA synthetase [Themira nigricornis]
          Length = 132

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 58/133 (43%), Positives = 75/133 (56%), Gaps = 14/133 (10%)

Query: 45  PFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG 99
            FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG
Sbjct: 1   QFKPVFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 60

Query: 100 GYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKI 151
            YFK      AW+ LT+   L + RLY+T +  DE        E  ++W ++ GL  + I
Sbjct: 61  DYFKREICTWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQIWTEL-GLKPEHI 119

Query: 152 IRITTNDNFWSMA 164
           +     DNFW M 
Sbjct: 120 LPGNMKDNFWEMG 132


>gi|321442069|gb|ADW85449.1| ala-tRNA synthetase [Ethmia eupostica]
          Length = 235

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGD-RNAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L +A E+           G++      + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKKANYDTDLFMPLFKAIEKGTGVRAYSGKVGVEDIDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSSLVYTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQTINEEEIQFLKTLSRGRNLLNRTIEKLNDSKTVPGDVAWRL 235


>gi|157813840|gb|ABV81665.1| putative AATS-ALA protein [Cydia pomonella]
          Length = 235

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDLFMPLFKAIEVGTGSRPYTGKVGDEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVHTVIDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    +++ +  E+ +F KTL RG  LL+  +  LG    + G+VA++L
Sbjct: 180 DVFPEIKKDPESVKQIINEEEVQFLKTLTRGRNLLNRTIEKLGHSNSIPGEVAWRL 235


>gi|319740507|gb|ADV60547.1| ala-tRNA synthetase [Prismosticta fenestrata]
          Length = 235

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 127/236 (53%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKSIEHGTGVRPYSGKVXADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPEFFGSLVHTVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L     + GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTIEKLDSSTTIPGDVAWRL 235


>gi|262301351|gb|ACY43268.1| ala-tRNA synthetase [Hanseniella sp. 'Han2']
          Length = 235

 Score =  210 bits (535), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+Q+ +++      LP+  I
Sbjct: 1   ETGPCGPCSEIHYDRI-GGRDASHLVNADVPDVLEIWNLVFIQYNRESDGSLRSLPRKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVI 275
           D GMGLER+ +V+Q K +NYD DLF  L  A E+ TG                 + +RV+
Sbjct: 60  DCGMGLERLVSVIQNKPSNYDTDLFMPLFSAIEKGTGSRPYLGRVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNAKPGFFSTLVDVVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           S +PEL +   ++++    E+  F KTL RG  LL+  ++ LG    L GDVA++L
Sbjct: 180 STFPELQKDPQMVKDIXNEEEAMFLKTLTRGQKLLERTIAKLGDTTTLPGDVAWRL 235


>gi|262301331|gb|ACY43258.1| ala-tRNA synthetase [Chthamalus fragilis]
          Length = 235

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPC+EI FD+           + +    +EIWNLVF+QF +++      LPK  +
Sbjct: 1   DTGPCGPCTEIHFDRI-GGRDAANLVNMDDPNVVEIWNLVFIQFNRESDGSLKPLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ ++LQ K +NYD DLF+ + Q   ++TG +               + +RV+
Sbjct: 60  DCGLGLERLVSILQGKLSNYDTDLFQPIFQHITKLTGARPYTGKVGADDTDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P + GRGYVLRRI+RR + YA   LG    +   L+P +   +G
Sbjct: 120 ADHVRTLTIALSDGGRPDSVGRGYVLRRILRRGVRYATEKLGARRGVFAALVPTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    + + +  E+ +F KTL+RG  LL+  +  LG  + L GDVA++L
Sbjct: 180 DFFPELKKDPQTVMDIINEEEAQFLKTLNRGRTLLERTIGKLGDSKTLPGDVAWRL 235


>gi|319740503|gb|ADV60545.1| ala-tRNA synthetase [Oxytenis modestia]
          Length = 235

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGFPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFGTLVNTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQVINEEEIQFLKTLTRGRNLLNRTIEKLDDSKIIPGDVAWRL 235


>gi|319740489|gb|ADV60538.1| ala-tRNA synthetase [Bombyx mori]
          Length = 235

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 127/236 (53%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGE-REAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGIDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL RG  LL   +  L   + L GDVA++L
Sbjct: 180 DVFPEIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTIEKLNNSKTLPGDVAWRL 235


>gi|321442071|gb|ADW85450.1| ala-tRNA synthetase [Emmelina monodactyla]
          Length = 235

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGNRDA-AHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K  NYD DLF  L +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQDKRANYDTDLFMPLFKAIEVGTGARPYSGKVGADDEDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYACEKLNAKSGFFGTLVYKVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + + +  E+ +F KTL RG  LL+  +  L   +++ GDVA++L
Sbjct: 180 DVFPEIKKDPEAVIQIINEEEIQFLKTLSRGRNLLNRTIEKLNNVKVIPGDVAWRL 235


>gi|262301355|gb|ACY43270.1| ala-tRNA synthetase [Heterometrus spinifer]
          Length = 235

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/236 (39%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF ++N      LPK  +
Sbjct: 1   ETGPCGPCSEIHYDRI-GGRDAKHLVNADVPDVLEIWNLVFIQFNRENDGSLKPLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVI 275
           DTGMGLER+ +V+Q+K++NYD DLF  +  A ++ T          +  +    + +RV+
Sbjct: 60  DTGMGLERLVSVIQDKSSNYDTDLFVPIFDAIQKATSARPYEGKVGVDDKDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   LG        L+P +   +G
Sbjct: 120 ADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYATEKLGAKPGAFASLVPVVIDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL      I + +  E+ +F KTL RG  LL+  +  LG +++L G+VA++L
Sbjct: 180 EIFPELKTDPQTIIDIITDEEAQFLKTLSRGQRLLERTIDKLGSEKVLPGEVAWRL 235


>gi|262301391|gb|ACY43288.1| ala-tRNA synthetase [Prokoenenia wheeleri]
          Length = 235

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 139/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI +D+           + +    +EIWNLVF+QF +++      LPK  +
Sbjct: 1   DTGPCGPCSEIHYDRI-GGRDAKELVNADVPDVLEIWNLVFIQFNRESDGSLKPLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ +V+Q K +NYD D+F  + +A ++ TG                 + +RV+
Sbjct: 60  DTGMGLERLVSVIQNKPSNYDTDIFVPIFEAIQKATGCPPYSGFVGSEDVSGVDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P + GRGYVLRRI+RRA+ YA   L     L+  L+P + + +G
Sbjct: 120 ADHIRTLTIALSDGGHPDSTGRGYVLRRILRRAVRYATEKLNAKPGLLSSLIPIVISILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    +++ +  E+++F KTL RG  L +  ++ +G  + L GDVA++L
Sbjct: 180 ETFPELSKDPESVKDIIEEEEKQFLKTLSRGKRLFERTINKMGDQKYLPGDVAWRL 235


>gi|321442081|gb|ADW85455.1| ala-tRNA synthetase [Lasiocampa quercus]
          Length = 235

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   DTGPCGPCSELHYDRIGD-RNAAHLVNMDDPDVLEIWNLVFIQFNRESDGTLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIENGTGTRPYSGKVGTDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVYTVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 180 HVFPEIKKDPKTIVQLINEEEVQFLKTLSRGRNLLNRTIEKLTNSKIIPGDIAWRL 235


>gi|319740493|gb|ADV60540.1| ala-tRNA synthetase [Lemonia dumi]
          Length = 235

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRNAAHLVNMDDPDVLEIWNLVFIQFNRETDGTLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +  E+ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFETIEKGTGIRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTITIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNXKPGFFGSLVYTVVNLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  LG  +I+ GD+A++L
Sbjct: 180 DVFPEIKKDPDSIVQTINEEEVQFLKTLSRGRNLLNRTIEKLGDSKIIPGDIAWRL 235


>gi|321442055|gb|ADW85442.1| ala-tRNA synthetase [Caloptilia bimaculatella]
          Length = 235

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRNAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K  NYD D F  L  A E+ TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQDKKANYDTDFFIPLFNAIEKGTGSRPYTGKVGPDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVETLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + E +  E+ +F KTL RG  LL+  +  LG  + + GDVA++L
Sbjct: 180 DVFPEIKKNPEGVIEVINEEEIQFLKTLTRGRNLLNRTIDKLGNSKTVPGDVAWRL 235


>gi|262301399|gb|ACY43292.1| ala-tRNA synthetase [Scolopendra polymorpha]
          Length = 235

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF ++N  E  ILPK  I
Sbjct: 1   ETGPCGPCSEIHYDRIGGRDASA-LVNIDDPDVLEIWNLVFIQFNRENDGELKILPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMG ER+ +V+Q+KT+NYD D+F  +  A ++ TG +  G +          + +RV+
Sbjct: 60  DCGMGFERLTSVIQQKTSNYDTDIFVPIFDAIQKGTGQRPYGGSVGSADSDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLNAKSGFFSTLIDVVIETLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +   ++++ +  E+ +F KTL RG  LL   ++ L    +L GD+A++L
Sbjct: 180 DTFPEVKKDPQMVKDIINEEEIQFLKTLTRGQRLLQRTINKLNGQSVLPGDIAWRL 235


>gi|319740491|gb|ADV60539.1| ala-tRNA synthetase [Endromis versicolora]
          Length = 235

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGLLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKSIENGTGVRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHTVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTIEKLDSSKTIPGDIAWRL 235


>gi|157813824|gb|ABV81657.1| putative AATS-ALA protein [Limulus polyphemus]
          Length = 235

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/236 (38%), Positives = 140/236 (59%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF ++N     +LPK  I
Sbjct: 1   ETGPCGPCSEIHYDRIGDRDA-KHLVNADVPDVLEIWNLVFIQFNRENDGTLRMLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ +V+Q+K++NYD DLF  +  A ++VTG +               + +RV+
Sbjct: 60  DTGMGLERLVSVIQQKSSNYDTDLFVPIFDAIQKVTGTRPYQGKVGSDDEDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + +A   L     +   L+P +   +G
Sbjct: 120 ADHVRTLTVSLSDGGRPDNTGRGYVLRRILRRGVRFATEKLNAKPGVFAGLVPVVIDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +   ++ + +  E+ +F KTL RG  LL+  ++ LG  + L GDVA++L
Sbjct: 180 DVFPELRKDPQMVMDIINEEESQFLKTLTRGHRLLERTINKLGNVKTLPGDVAWRL 235


>gi|319740515|gb|ADV60551.1| ala-tRNA synthetase [Carthaea saturnioides]
          Length = 235

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFESIENGTGVRPYTGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTMEKLDDSKTIPGDVAWRL 235


>gi|157813832|gb|ABV81661.1| putative AATS-ALA protein [Speleonectes tulumensis]
          Length = 235

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF +        LPK  I
Sbjct: 1   ETGPCGPCSEIHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRDTSGTLNPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVI 275
           D GMG ER+ +V+Q+  +NYD DLF  L  A  + TG++               + +RV+
Sbjct: 60  DCGMGFERVVSVIQDLHSNYDTDLFIPLFDAIHKGTGVRCYTGKVGEEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L         L+  +   +G
Sbjct: 120 ADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNAKPGFFATLVDVVIQVLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PEL +   ++++ +  E+ +F KTL RG  LL   +  LG  + L GDVA++L
Sbjct: 180 ATFPELKKDPEMLKDIINEEEAQFLKTLSRGRNLLQRTIRKLGDQKNLPGDVAWRL 235


>gi|269986161|gb|EEZ92474.1| Alanine--tRNA ligase [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 614

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 111/599 (18%), Positives = 193/599 (32%), Gaps = 154/599 (25%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +   I   F  FF+K GH+ +    ++      + F  + +  F      G  +P    +
Sbjct: 62  SYKDIWDGFSSFFKKKGHKEIKRYPVVARWRDDIYFVEAAIDDFAPYVIKGIAEPPANPL 121

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q C+R     ND++NVG + RH T F M    +F       YF + AI+   D +  
Sbjct: 122 VVPQICLR----FNDINNVGLSGRHLTSFIMAEEAAFNTTKKKTYFDKEAIKYITDWILT 177

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              + +  L                             T  ++ W  A  G  G C E F
Sbjct: 178 GLKIKKEEL-----------------------------TFIEDAWVGA--GYAGSCLEYF 206

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                                +E+ N V+M++     +    +P  +ID G GLER + V
Sbjct: 207 ------------------AGGLELGNQVYMRYVINENK-LEEIPTKTIDMGAGLERWSWV 247

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------------------- 264
                  Y+   F  +++  ++  G+ Y                                
Sbjct: 248 TNNTPTIYEA-TFPKVVEYIKKKVGVSYDDKKIKLAYEYIGKIDFEKTGIEEAIKAVARD 306

Query: 265 ----------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
                       +++     I DH R+    I DG LP+N G GY LR I+RRA+ + R 
Sbjct: 307 TKTNENEIKKMLSDMQAVYSIADHSRTLLVAIHDGALPSNVGGGYNLRNILRRALNFIRS 366

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
             + +  +  ++     E GS + EL +     +  +  E ER+    +R        +S
Sbjct: 367 KNW-DLDINDVIEEHKKEFGSWFEELKKTD--TKGVIDKEIERYNDFRERNYKF----IS 419

Query: 375 HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
            L   + ++     +LY++ G+ +D ++ +             F                
Sbjct: 420 SLLDKKEIDEKQMIELYESRGITIDDIKTVAETEDKQITLPEKFYS-----------DIN 468

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
                  EK  +S  E    T+ + YD                            + +  
Sbjct: 469 KAKKRKEEKKDYSFIEGLEKTKKMFYDE---------------------KLKTSKAKIMK 507

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           IV+  +            ++ +QT FY E GGQ  D G      +             +
Sbjct: 508 IVKPDK------------IILNQTIFYPEMGGQKSDRGKIKNSNVINVEIKDDIIIHYL 554


>gi|262301393|gb|ACY43289.1| ala-tRNA synthetase [Scutigera coleoptrata]
          Length = 235

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSEIHYDRV-GGRNARDLVNMDDPDVLEIWNLVFIQFNRETDGSLRSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+G ER+ +V+Q K++NYD D F  L  A ++ TG +               + +RV+
Sbjct: 60  DCGLGFERIVSVIQNKSSNYDTDCFMPLFDAVQKGTGARPYEGKIGADDKDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLSAKAGFFSTLVDVVVQNLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +   L+++ +  E+ +F KTL RG  LL+  +S LG +++L GDVA++L
Sbjct: 180 EMFPEVTKDPQLVKDIINEEEVQFLKTLSRGHRLLERTISKLGSEKVLPGDVAWRL 235


>gi|321442107|gb|ADW85468.1| ala-tRNA synthetase [Trogoptera salvita]
          Length = 235

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L +A E  TGM+               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDLFMPLFKAIEIGTGMRPYSGKVGDEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLIYTVIDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    +   +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEIKKDPESLIHLINEEEIQFLKTLSRGRNLLNRTMEKLNDSKTIPGDVAWRL 235


>gi|321442093|gb|ADW85461.1| ala-tRNA synthetase [Pryeria sinica]
          Length = 235

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGN-RNAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K+ NYD D F  L +A E+ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKSANYDTDFFMPLFKAIEEGTGVRAYTGKVGANDVDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 180 DVFPEIKRDPKSIIQTINEEEIQFLKTLIRGRNLLNRTIEKLNDSKIVPGDLAWRL 235


>gi|262301339|gb|ACY43262.1| ala-tRNA synthetase [Dinothrombium pandorae]
          Length = 234

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 130/236 (55%), Gaps = 12/236 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    IEIWNLVF+Q+ ++N     +LPK  I
Sbjct: 1   ETGPCGPCSEIHYDKIGDRDA-AYLVNMDDPDVIEIWNLVFIQYNRENDGSLSLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVI 275
           DTGMG ER+ +V+Q K +NYD D+F+   +A +Q+T                  + +RV+
Sbjct: 60  DTGMGFERLTSVIQGKPSNYDTDIFQPFFEAIQQLTNSREYSGKVGKDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA             L+P +   +G
Sbjct: 120 ADHARTLTIALADGGRPDNVGRGYVLRRILRRAVRYATEKFNAKPGTFASLVPVVVNTLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             + EL +    I + +  E+ +F KTL RG  LL+  +S      IL GD+A++L
Sbjct: 180 DVFLELKKDPQTIIDIINEEEAQFLKTLSRGRKLLERAISKTD-SNILPGDIAWRL 234


>gi|157813838|gb|ABV81664.1| putative AATS-ALA protein [Antheraea paukstadtorum]
          Length = 235

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFXPIFKAIENGTGARPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPXFFASLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRNIEKLNNSKTIPGDVAWRL 235


>gi|321442083|gb|ADW85456.1| ala-tRNA synthetase [Melittia cucurbitae]
          Length = 235

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+Q+ ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQYNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIESGTGVRPYSGKVGAEDEDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSTLIHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  LGK +I+ GDVA++L
Sbjct: 180 DVFPEITKDPNSIIQTINEEEVQFLKTLSRGRNLLNRTIEKLGKXKIIPGDVAWRL 235


>gi|319740497|gb|ADV60542.1| ala-tRNA synthetase [Mirina christophi]
          Length = 235

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  +  + E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFASIENGTGVRPYSGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DVFPEIKKDPDSIIQLIDEEEIQFLKTLCRGRNLLNRTIEKLDNSKTIPGDIAWRL 235


>gi|319740513|gb|ADV60550.1| ala-tRNA synthetase [Saturnia naessigi]
          Length = 235

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENGTGVRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFGSLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEINKDPDSIIQLINEEEIQFLKTLSRGRNLLNRTIEKLNNSKTIPGDVAWRL 235


>gi|321442057|gb|ADW85443.1| ala-tRNA synthetase [Chelepteryx collesi]
          Length = 235

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 83/236 (35%), Positives = 127/236 (53%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGERDA-AHLVNMDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + ++ E  TG+                + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKSIENGTGVRPYSGKVGTDDMDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRGVRYASEKLNAKPGFFGSLVYKVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DVFPEIRKDPESIIQLINEEEIQFLKTLCRGRNLLNRTIDKLDTSKTIPGDIAWRL 235


>gi|321442105|gb|ADW85467.1| ala-tRNA synthetase [Tolype notialis]
          Length = 235

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   DTGPCGPCSELHYDRIGD-RNAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIEIGTGIRPYSGKVGIDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLIYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 NIFPEIKKDPDSIVQLINEEELQFLKTLLRGRNLLNRTIEKLTNTKTIPGDIAWRL 235


>gi|319740509|gb|ADV60548.1| ala-tRNA synthetase [Paonias myops]
          Length = 235

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L ++ E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKSIEIGTGARPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + + +  E+ +F KTL RG  LL+  +  L K +I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESLVQLINEEEIQFLKTLTRGRNLLNRTMEKLDKSKIIPGDVAWRL 235


>gi|321442073|gb|ADW85451.1| ala-tRNA synthetase [Fulgoraecia exigua]
          Length = 235

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRI-GGREAAHLVNMDDPDVLEIWNLVFIQYNRETDGSLKMLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVI 275
           D G+GLER+ +V+Q K  NYD D+F  L +A E+           G +      + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDIFMPLFEAIEKGTGVRAYTGKVGKEDNDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L      +  L+  +   +G
Sbjct: 120 ADHVRTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFLGSLVFKVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    +   +  E+ +F KTL RG  LL+  +  LG  +I+ G+VA++L
Sbjct: 180 EVFPEIKRDPYNVINIINEEETQFLKTLTRGRGLLNRTIEKLGDSKIIPGEVAWRL 235


>gi|321442053|gb|ADW85441.1| ala-tRNA synthetase [Axia margarita]
          Length = 235

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIEIGTGVRPYTGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  LG  +I+ GDVA++L
Sbjct: 180 EVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTIEKLGXSKIIPGDVAWRL 235


>gi|262301377|gb|ACY43281.1| ala-tRNA synthetase [Neogonodactylus oerstedii]
          Length = 235

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   DTGPCGPCSEIHFDRI-GGRNAAHLVNMDDPDVLEIWNLVFIQFNREPDSSLRLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVI 275
           D GMGLER+ +++Q K +NYD D+F  +  A +++T                  + +RV+
Sbjct: 60  DCGMGLERVVSIMQNKRSNYDTDMFTPIFDAIQRLTNAPSYQGRVGKDDVNGLDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG +P N+GRGYVLRRI+RR + YA   LG    +   L+  +   + 
Sbjct: 120 ADHIRTITIALSDGGMPDNQGRGYVLRRILRRGVRYASEKLGAKPGVFASLVDVVIELLK 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I+  +  E+ +F KTL+RG  LL+  +S L    ++ GDVA++L
Sbjct: 180 GTFPEVTKDPEFIKSVINEEETQFLKTLERGRKLLERTISRLDGTTVIPGDVAWRL 235


>gi|321442101|gb|ADW85465.1| ala-tRNA synthetase [Tineola bisselliella]
          Length = 235

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHFDRI-GGRDVPHLVNMDDPDVLEIWNLVFIQFNRESDGSLRSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L  A ++ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKKANYDTDLFIPLFDAIQKGTGVRPYSGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L   +     L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKKGFFGSLVNTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  + K +++ GDVA++L
Sbjct: 180 DVFPEIKRDPESIIQTINEEEIQFLKTLSRGRNLLNRTMEKINKTKVVPGDVAWRL 235


>gi|319740505|gb|ADV60546.1| ala-tRNA synthetase [Phiditia sp. JCR-2009]
          Length = 235

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRI-GGREAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKSIENGTGVRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+ ++   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLIYSVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTIEKLEBSKIIPGDVAWRL 235


>gi|321442041|gb|ADW85435.1| ala-tRNA synthetase [Apha aequalis]
          Length = 235

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGN-RNAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKQLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L ++ E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKSIESGTGTRPYSGKVGTDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGTLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL RG  LL+  +  LG  +I+ GDVA++L
Sbjct: 180 DIFPEIKKDPDSIVLLINEEEIQFLKTLSRGRNLLNRTMEKLGGSKIIPGDVAWRL 235


>gi|262301333|gb|ACY43259.1| ala-tRNA synthetase [Ctenolepisma lineata]
          Length = 236

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 90/237 (37%), Positives = 132/237 (55%), Gaps = 12/237 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           +++    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRNAAHLVNQDDPDVLEIWNLVFIQFNRESDGTLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMGLER+ +V+Q K +NYD DLF  + +A ++ TG                 + +RV+
Sbjct: 60  DCGMGLERIVSVIQNKRSNYDTDLFTPIFKAIQEGTGAPPYQGRVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    LG        L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGHPDNTGRGYVLRRILRRAVRYGTEKLGAKPGFFATLVSTVVDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKL 390
             +PE+      I + L  E+ +F KTL RG  LL+  ++ L  K  +L GDVA++L
Sbjct: 180 DTFPEVRNDPQGIMDILNEEESQFLKTLSRGRNLLNRTIAKLDGKSNVLPGDVAWRL 236


>gi|319740499|gb|ADV60543.1| ala-tRNA synthetase [Nataxa flavescens]
          Length = 235

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKSIENGTGVRPYSGKVGTDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHNVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 NVFPEIKKDPESIIQLINEEEIQFLKTLCRGRNLLNRTMDKLDASKIIPGDVAWRL 235


>gi|321442047|gb|ADW85438.1| ala-tRNA synthetase [Amauta cacica]
          Length = 235

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E            G++      + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFVPLFKAIEDGTGVRSYTGKVGVEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPEFFSSLVNTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DVFPEIKKDPESIIQIINEEEVQFLKTLSRGRNLLNRTMDKLNDSKTVPGDIAWRL 235


>gi|321442091|gb|ADW85460.1| ala-tRNA synthetase [Prionoxystus robiniae]
          Length = 235

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q +  NYD DLF  L +A E+ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNRRANYDTDLFVPLFKAIERGTGVRPYSGKVGPEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLIHTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L + + + G+VA++L
Sbjct: 180 DVFPEIKKDPESIIQTINEEEIQFLKTLSRGRNLLNRTIEKLSESKTVPGEVAWRL 235


>gi|319740485|gb|ADV60536.1| ala-tRNA synthetase [Acanthobrahmaea europaea]
          Length = 235

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGD-RNAAHLVNMDDPDVLEIWNLVFIQFNRETGGALKPLPKRHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A ++ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFEAIQKGTGIRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYAFEKLNAKSGFFGSLVYTVVKLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 180 DVFPEIKKDPDSIVQMINEEEVQFLKTLSRGRNLLNRTIEKLDDSKIIPGDIAWRL 235


>gi|319740495|gb|ADV60541.1| ala-tRNA synthetase [Malacosoma americanum]
          Length = 235

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   DTGPCGPCSELHYDRI-GGRNAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKFLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  +G++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIEIGSGIRPYTGXVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 180 HVFPEIKKDPKSIVQLINEEEIQFLKTLSRGRNLLNRTIEKLSNSKIIPGDIAWRL 235


>gi|321442075|gb|ADW85452.1| ala-tRNA synthetase [Eterusia aedea]
          Length = 235

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+Q+ ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGN-RNAAHLVNMDDPDVLEIWNLVFIQYNRETDGSLKMLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K  NYD D F  L +A EQ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQDKKANYDTDFFVPLFKAIEQGTGVRPYSGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  + + +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFAGLVNTVVSLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L    I+ GD+A++L
Sbjct: 180 DVFPEIKKDPESIMQTINDEEIQFLKTLTRGRNLLNRTIEKLNGSNIIPGDLAWRL 235


>gi|321442087|gb|ADW85458.1| ala-tRNA synthetase [Pollanisus sp. JCR-2011]
          Length = 235

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRNAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L  A ++ TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFVPLFTAIQKGTGTRPYSGKVGTEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PE+ +    I++ +  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 180 NVFPEIKKDPESIKQIINEEEIQFLKTLTRGRNLLNRTIDKLKNSKIVPGDLAWRL 235


>gi|262301361|gb|ACY43273.1| ala-tRNA synthetase [Libinia emarginata]
          Length = 237

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/238 (39%), Positives = 143/238 (60%), Gaps = 13/238 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           +E+    +EIWNLVFMQF ++       LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRIGNRDA-AHLVNEDDPDVLEIWNLVFMQFNREADNTLRTLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMGLER+ ++LQ KT+NYD DLF  + +A ++VTG +               + +RV+
Sbjct: 60  DCGMGLERLVSILQGKTSNYDTDLFTPIFEAIQKVTGCQPYKGRVGAADTDGVDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMG 334
            DHLR+ +  ++DG +P N GRGYVLRRI+RRA+ Y A  LG    ++  L+  +   +G
Sbjct: 120 ADHLRTLTVALSDGGMPDNTGRGYVLRRILRRAVRYAAEKLGMKPGVLSSLIGVVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKL 390
            A+PE+ +   +I + +  E+ +F +TL+RG  +L+  +  LGK    ++ G+VA++L
Sbjct: 180 KAFPEVTRDPQMICDVIDEEERQFLRTLERGHRVLERAVHRLGKAGGGMVPGEVAWRL 237


>gi|319740487|gb|ADV60537.1| ala-tRNA synthetase [Apatelodes torrefacta]
          Length = 235

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRNAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENGTGARPYSGKVGAEDIDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYSTEKLNGKPGFFSSLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL RG  LL+  +  L    I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESIVHIINDEEIQFLKTLTRGRNLLNRTIEKLNSSTIIPGDVAWRL 235


>gi|262301357|gb|ACY43271.1| ala-tRNA synthetase [Idiogaryops pumilis]
          Length = 235

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+Q+ ++      +LPK  +
Sbjct: 1   ETGPCGPCSEIHYDRI-GGRNVAHLVNADVPEVLEIWNLVFIQYNRETDGSLRLLPKQHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMG ER+ +V+Q+K +NYD D+F  + +A ++ TG++               + +RV+
Sbjct: 60  DTGMGFERLVSVIQDKPSNYDTDIFMPIFEAIQKATGVRPYTGKVGKDDADGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   +         L+P +   +G
Sbjct: 120 ADHSRTLTIALSDGGRPDNIGRGYVLRRILRRAVRYATEKMNAAPGTFARLVPVVVGILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    + + +  E+ +F KTL RG  LL+  +  LG  + L G VA++L
Sbjct: 180 DVFPELKKDPEGVMDIINEEENQFLKTLSRGRRLLEKTVGKLGDQKFLPGXVAWRL 235


>gi|262301395|gb|ACY43290.1| ala-tRNA synthetase [Scutigerella sp. 'Scu3']
          Length = 235

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 93/236 (39%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRI-GGRDAKHLVNADVPDVLEIWNLVFIQFNREADGSLLPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMGLER+ +V+Q K++NYD DLF+ L +A E+ TG +               + +RV+
Sbjct: 60  DCGMGLERLVSVVQNKSSNYDTDLFQALFEAVEKGTGSRPYTGKVGPEDADGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L      +  L+  + T +G
Sbjct: 120 ADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLNAKPGFIASLVDVVVTLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    +++ +  E+ +F KTL RG  LL+  ++ +G    L GDVA++L
Sbjct: 180 DTFPELNKDPQTVKDIINDEEVQFLKTLSRGQKLLERTIAKMGDTRTLPGDVAWRL 235


>gi|262301335|gb|ACY43260.1| ala-tRNA synthetase [Carcinoscorpius rotundicauda]
          Length = 235

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 140/236 (59%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF ++N     +LPK  +
Sbjct: 1   ETGPCGPCSEIHYDRI-GGRDAKHLVNADVPDVLEIWNLVFIQFNRENDGTLKMLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ +V+Q K++NYD DLF  + +A ++VTG +               + +RV+
Sbjct: 60  DTGMGLERLVSVIQGKSSNYDTDLFVPIFEAIQKVTGSRPYEGKIGSHDEGGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P + GRGYVLRRI+RR + +A   L     +   ++P +   +G
Sbjct: 120 ADHVRTLTVSLSDGGRPDSTGRGYVLRRILRRGVRFATEKLNAKPGVFAGIVPTVVNILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +   ++ + +  E+ +F KTL RG  LL+  +  LG  ++L GDVA++L
Sbjct: 180 DVFPELRKDPQMVMDIINEEESQFLKTLTRGRRLLERTILKLGNIKMLPGDVAWRL 235


>gi|319740501|gb|ADV60544.1| ala-tRNA synthetase [Oberthueria formosibia]
          Length = 235

 Score =  206 bits (524), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKQLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKSIEIGTGVRPYSGKVGPDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFGSLVHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 GVFPEIKKDPESIIQLINEEEIQFLKTLSRGRSLLNRTMEKLDGSKTIPGDIAWRL 235


>gi|321442089|gb|ADW85459.1| ala-tRNA synthetase [Poecilocampa populi]
          Length = 235

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   DTGPCGPCSELHYDRI-GGRNAAHLVNMDDPDVLEIWNLVFIQFNRESDSTLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIENGTGTRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPRFFASLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 NVFPEIKKDPKSIIQLINEEEVQFLKTLSRGRNLLNRTIEKLNNSKIIPGDVAWRL 235


>gi|321442113|gb|ADW85471.1| ala-tRNA synthetase [Zeuzera coffeae]
          Length = 235

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           +++    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRNAASLVNKDDPDVLEIWNLVFIQFNRESDGSLQSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVI 275
           D G+G ER+ +V+Q K  NYD DLF  L +A E+           G++      + +RV+
Sbjct: 60  DCGLGFERLVSVIQNKKANYDTDLFVPLFKAIEEGTGVREYSGKVGVEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   + 
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVNTVVDLLE 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + +T+  E+ +F KTL RG  LL+  +  L   + + GDVA+++
Sbjct: 180 DTFPEINKDPKSVIQTINEEEIQFLKTLLRGRNLLNRTIEKLNDCKTVPGDVAWRM 235


>gi|321442111|gb|ADW85470.1| ala-tRNA synthetase [Eucalantica sp. JCR-2011]
          Length = 235

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHFDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNREVDGTLKALPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +++Q+K  NYD D F  L +  E+ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSIIQDKRANYDTDFFMPLFKVIERGTGVRPYSGKVGIEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGFPDNTGRGYVLRRILRRAVRYASEKLXAKPKFFGTLVHTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  LG   ++ GDVA++L
Sbjct: 180 DVFPEIKKDPEGIIQVINDEEIQFLKTLSRGRKLLNRTIEKLGNITVVPGDVAWRL 235


>gi|262301401|gb|ACY43293.1| ala-tRNA synthetase [Stenochrus portoricensis]
          Length = 235

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 92/236 (38%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           + +    +EIWNLVF+QF ++N      LPK  +
Sbjct: 1   DTGPCGPCSEIHFDRL-GGRDAKNLVNADVPDVLEIWNLVFIQFNRENDGTLMSLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVI 275
           DTGMGLER+ +V+Q  ++NYD DLF  +  A ++ TG+K               + +RV+
Sbjct: 60  DTGMGLERLVSVIQNHSSNYDTDLFVPIFDAIQKSTGVKSYSGKVGQEDIDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L     +   L+P +   +G
Sbjct: 120 ADHVRTLAIALSDGGRPDNTGRGYVLRRILRRAVRYTIEKLNGKPGVFASLVPVVVNLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL + +  + + +  E+ +F KTL RG  LL   ++ LG  +IL GDVA++L
Sbjct: 180 DIFPELKKDQQTVMDIINDEESQFLKTLSRGHRLLQRTINKLGDQKILPGDVAWRL 235


>gi|262301327|gb|ACY43256.1| ala-tRNA synthetase [Artemia salina]
          Length = 235

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           +++    +EIWNLVFM + +++      LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRI-GGRDAADLVNKDDPDVLEIWNLVFMTYNRESDGTLKYLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVI 275
           D G+GLER+ +V+QEK +NYD DLF  L  A ++ T M         + +    + +RV+
Sbjct: 60  DCGLGLERLVSVVQEKRSNYDTDLFVPLFDAIQKGTSMQAYSGKVGVEDKEGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+  +   +G
Sbjct: 120 ADHIRTLTIALSDGGRPDNVGRGYVLRRILRRGVRYATEKLKAKPGFFGSLVHVVVDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             + E+ +    I   +  E+ +F KTL RG  LL+  ++ LG  ++L G++A++L
Sbjct: 180 DTFSEIKKDPETIISIIDEEERQFLKTLSRGKSLLERTVAKLGDSKVLPGNIAWRL 235


>gi|262301345|gb|ACY43265.1| ala-tRNA synthetase [Eremocosta gigasella]
          Length = 235

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           + +    +EIWNLVF+QF ++       LPK  +
Sbjct: 1   DTGPCGPCSEIHFDRIGNRDA-KHLVNADVPDVLEIWNLVFIQFNRETDGVLKPLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVI 275
           DTGMGLER+ +V+Q K +NYD DLF  + +A E+           G + E    + +RV+
Sbjct: 60  DTGMGLERLVSVIQCKXSNYDTDLFVPIFEAIEKSTGARPYQGKVGKEDEDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++D   P N GRGYVLRRI+RRA+ +A   L         L+P +   +G
Sbjct: 120 ADHIRTLTVALSDXGRPDNTGRGYVLRRILRRAVRFATEKLNAKPGTFASLVPVVVDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + + +  E+ +F KTL RG  LL+  +  LG   +L G+VA++L
Sbjct: 180 DTFPEIKKDPQSVMDIINDEETQFLKTLSRGHRLLERTIHKLGDQNLLPGNVAWRL 235


>gi|321442103|gb|ADW85466.1| ala-tRNA synthetase [Tinea columbariella]
          Length = 235

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 136/238 (57%), Gaps = 15/238 (6%)

Query: 165 ETGPCGPCSEIFFDQGECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           ETGPCGPCSE+ FD+   I G       + +    +EIWNLVF+QF +++      LPK 
Sbjct: 1   ETGPCGPCSELHFDR---IGGREVPHLVNMDDPDVLEIWNLVFIQFNRESDGSLRSLPKK 57

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHR 273
            ID G+GLER+ +V+Q K  NYD DLF  L  A ++ TG++            +  + +R
Sbjct: 58  HIDCGLGLERLVSVIQNKNANYDTDLFVPLFDAIQKGTGVRSYSGKVGAEDVDSIDMAYR 117

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332
           V+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   
Sbjct: 118 VLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVNTVVEL 177

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           +G  +PE+ +    I +T+  E+ +F KTL RG  LL+  +  + K +++ GDVA++L
Sbjct: 178 LGDVFPEIKRDPESIIQTINEEEIQFLKTLIRGRNLLNRTMEKIDKTKVVPGDVAWRL 235


>gi|321442051|gb|ADW85440.1| ala-tRNA synthetase [Atteva punctella]
          Length = 235

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+  D+           + +    +EIWNLVF+Q+ +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHXDRI-GGREAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K  NYD D F  + +  E+ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQDKRANYDTDFFMPIFKVIEKGTGVRPYMGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTMDKLNDSKIVPGDVAWRL 235


>gi|262301363|gb|ACY43274.1| ala-tRNA synthetase [Limnadia lenticularis]
          Length = 235

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           +++    +EIWNLVFM + ++      +LPK  I
Sbjct: 1   ETGPCGPCSEIHYDRI-GGRDAAHLVNQDDPDVLEIWNLVFMTYNRETDGSLKVLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVI 275
           D GMGLER+ +V+Q+K +NYD DLF  +  A ++ T          ++      + +RV+
Sbjct: 60  DCGMGLERLVSVIQDKRSNYDTDLFVPIFDAIQKGTNARPYAGKVGVEDRDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+P +C  +G
Sbjct: 120 ADHARTLTISLSDGGRPDNVGRGYVLRRILRRGVRYATEKLSAKPGFFASLVPTVCQVLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           S +PE+ +   L+ + +  E+ +F KTL RG  LL+  ++ L     L GDVA++L
Sbjct: 180 STFPEVNRDPQLVMDIINDEEAQFLKTLSRGRNLLERTVAKLEGQTTLPGDVAWRL 235


>gi|321442085|gb|ADW85457.1| ala-tRNA synthetase [Platynota idaeusalis]
          Length = 235

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+Q+ +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRNAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A +  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFVPIFEAIQTGTGSRPYSGKVGDDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +  + I +T+  E+ +F KTL RG  LL+  +  LG  + + G+VA++L
Sbjct: 180 DVFPEIKKDPVSIIQTINEEEIQFLKTLTRGRNLLNRTIEKLGDSKTVPGEVAWRL 235


>gi|262301369|gb|ACY43277.1| ala-tRNA synthetase [Loxothylacus texanus]
          Length = 235

 Score =  204 bits (520), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPC+EI FD+ E         +++    +EIWNLVF+QF +++      LP+  +
Sbjct: 1   DTGPCGPCTEIHFDR-EGGRNAAHLVNQDDPNVVEIWNLVFIQFNRESDGSLRTLPRQHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVI 275
           DTGMGLER+ ++LQ K +NYD DLF+ +     Q+TG++          +    + +RV+
Sbjct: 60  DTGMGLERLVSILQNKMSNYDTDLFQPIFSKITQLTGVRQYTGKVGVEDKDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA         +   L+P +   +G
Sbjct: 120 ADHVRTLTIALSDGGRPDNVGRGYVLRRILRRGVRYASEKFAAKPGVFAALVPTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    + + +  E+ +F KTL RG  LL+  +S L     + GDV ++L
Sbjct: 180 DTFPELRKDPDTVMDIINEEEVQFLKTLKRGRSLLERAISRLANTTTVPGDVVWRL 235


>gi|321442059|gb|ADW85444.1| ala-tRNA synthetase [Euclemensia bassettella]
          Length = 235

 Score =  204 bits (520), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRNAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +VLQ K  NYD DLF  L +A ++ TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVLQNKRANYDTDLFVPLFEAIQKGTGARPYTGKVGAEDVDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSSLIYTVVQLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  LG  +++ GDVA++L
Sbjct: 180 BVFPEITKDPESIVQLINEEENQFLKTLSRGRNLLNRTIEKLGGSKVVPGDVAWRL 235


>gi|321442067|gb|ADW85448.1| ala-tRNA synthetase [Euclea delphinii]
          Length = 235

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 127/236 (53%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   DTGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRETGGALSLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKKANYDTDFFMPLFKAIEIGTGARPYSGKVGPEDTDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGHPDNTGRGYVLRRILRRAVRYTTEKLNGKPGFFGSLVHTVVQLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESIIHIINEEELQFLKTLTRGRNLLNRTIEKLSDKKIVPGDVAWRL 235


>gi|259015955|gb|ACV89260.1| alanyl-tRNA synthetase [Muscidifurax raptorellus]
          Length = 133

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 10/135 (7%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEA 136
            HHTFFEM+GN+SFG YFK+     AW+ LT++ +L   RLY+T +          DEE 
Sbjct: 1   YHHTFFEMMGNWSFGDYFKKEICGWAWEFLTEKLNLPADRLYVTYFGGDEKSNLKPDEEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
            K W  + G+    ++  +  DNFW M ETGPCGP SE+ +D+           + +   
Sbjct: 61  KKFWLSL-GVPESHVLPGSMKDNFWEMGETGPCGPXSELHYDRI-GGREAAHLVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQ 211
            +EIWNLVF+Q+ + 
Sbjct: 119 VLEIWNLVFIQYNRD 133


>gi|262301323|gb|ACY43254.1| ala-tRNA synthetase [Abacion magnum]
          Length = 235

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 92/236 (38%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPC+EI FD+        P  + +    +EIWNLVF+QF ++N     +LPK  +
Sbjct: 1   ETGPCGPCTEIHFDRIGE-RNAAPLVNADVPDVLEIWNLVFIQFNRENDGSLRVLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           DTGMGLER+ +V+Q K +NYD DLF  +  A ++ TG K               + +RV+
Sbjct: 60  DTGMGLERVVSVIQCKQSNYDTDLFLPIFDAVQKATGTKPYGALVGAEDADGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   L     L+  L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNTGRGYVLRRILRRGVRYAHEKLNAKPGLLADLVDVVVQILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PEL +    +++ +  E+ +F KTL RG  LL+  +  LG   +L GD+A++L
Sbjct: 180 TTFPELRKDPQSVKDVINEEETQFLKTLSRGQRLLERTVLKLGDQRVLPGDIAWRL 235


>gi|262301319|gb|ACY43252.1| ala-tRNA synthetase [Aphonopelma chalcodes]
          Length = 234

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 12/236 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+QF ++       LPK  +
Sbjct: 1   ETGPCGPCSEIHFDRI-GGRDASDLVNADIPDVLEIWNLVFIQFNREGDGFLRSLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVI 275
           DTGMGLER+ +V+Q K++NYD DLF  + +A +++T         G +      + +RV+
Sbjct: 60  DTGMGLERLVSVIQNKSSNYDTDLFMPIFEAIQKLTGAPSYTGKVGAEDVDGTDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P + GRGYVLRRI+RRA+ Y+   LG    +   L+P + + +G
Sbjct: 120 ADHARTLTVALADGGRPDSTGRGYVLRRILRRAVRYSTEKLGGKPGMFATLVPVVVSILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             + EL +    I + L  E+++F KTL RG  LL   +  L   ++L G+VA++L
Sbjct: 180 DIFTELKKDPQTIMDILNDEEQQFLKTLSRGHKLLQRTIQKLN-SKVLPGNVAWRL 234


>gi|262301321|gb|ACY43253.1| ala-tRNA synthetase [Acheta domesticus]
          Length = 235

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 93/238 (39%), Positives = 137/238 (57%), Gaps = 15/238 (6%)

Query: 165 ETGPCGPCSEIFFDQGECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           ETGPCGPCSE+ FD+   I G       +++    +EIWNLVF+QF ++   E   LPK 
Sbjct: 1   ETGPCGPCSELHFDR---IGGREVPHLVNQDDPDVLEIWNLVFIQFNREVGGELKSLPKK 57

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHR 273
            ID GMGLER+ +V+Q+K +NYD DLF  L QA +Q         + G +      + +R
Sbjct: 58  HIDCGMGLERLVSVIQQKRSNYDTDLFMPLFQAIQQGTGSRPYAGLVGSEDSDGVDMAYR 117

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332
           V+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L      +  L+  +   
Sbjct: 118 VLADHARTLTIALADGGYPDNTGRGYVLRRILRRAVRYATEKLNAKAGWLSSLVHVVVDL 177

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           +G  +PE+ +    I + +  E+ +F KTL RG  LL+  ++ L   + + GD+A++L
Sbjct: 178 LGDTFPEVKRDPQAIIDVINEEEIQFLKTLSRGRSLLNRTVAKLEGADTVPGDIAWRL 235


>gi|262301349|gb|ACY43267.1| ala-tRNA synthetase [Eurypauropus spinosus]
          Length = 235

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           + GPCGPC+EI +D+        P  + +    +EIWNLVF+QF +++      LPK  +
Sbjct: 1   DQGPCGPCTEIHYDRIGXRDA-APLVNADVPDVLEIWNLVFIQFNRESDGSLRSLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVI 275
           DTGMG ER+ +V+Q K +NYD D+F  +  A ++         + G   +    + +RV+
Sbjct: 60  DTGMGFERLVSVIQNKMSNYDTDVFTPIFDAIQKGTGCRPYSGLVGADDKDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P + GRGYV+RRI+RRA+ YA   L         L+  +   + 
Sbjct: 120 ADHARTLTVTLADGGHPDSVGRGYVMRRILRRAVRYAHEKLNAKPGFFATLVDIVLQLLA 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    I++T+  E+ +F KTL RG  LL+  +  LG      GDVA++L
Sbjct: 180 ETFPELAKDPQSIKDTINEEESQFLKTLSRGRKLLERTIVKLGNTTTFPGDVAWRL 235


>gi|56752605|gb|AAW24516.1| SJCHGC03396 protein [Schistosoma japonicum]
          Length = 122

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 70/112 (62%), Gaps = 5/112 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R  F +FF   GH  + SSS IP NDP+L+F N+GM  +K IF G   P      
Sbjct: 6   TARELRQQFFDFFNSRGHVYVHSSSTIPHNDPSLLFANAGMNQYKPIFQGTADPNSELGQ 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQL 109
            +     QKC+RAGGKHNDLD+VGR   HHTFFEMLGN+SFG YFK++ +  
Sbjct: 66  LKRAYNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGNWSFGDYFKKKHVDW 117


>gi|299561738|gb|ADJ36941.1| alanyl-tRNA synthetase [Stylogaster neglecta]
          Length = 136

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/138 (41%), Positives = 75/138 (54%), Gaps = 10/138 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKI 143
           MLGN+SFG YFK      AW+ LTK   L + RLY+T +  DE        E  ++W   
Sbjct: 1   MLGNWSFGDYFKTEICHWAWEFLTKRLMLPKDRLYVTYFGGDEKGGLLPDLECKQIWLD- 59

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL 203
            G+ A+ II     DNFW M ETGPCGPCSEI +D+           +++    +EIWNL
Sbjct: 60  MGIKAEHIIPGNMKDNFWEMGETGPCGPCSEIHYDRIGD-RSVPELVNQDDPDVLEIWNL 118

Query: 204 VFMQFEQQNKQERFILPK 221
           VF+QF ++       LPK
Sbjct: 119 VFIQFNREQDGSLKPLPK 136


>gi|319740511|gb|ADV60549.1| ala-tRNA synthetase [Quentalia chromana]
          Length = 235

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRI-GGREAAHLVNMDDPDVLEIWNLVFIQFNRETDASLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENGTGVRPYSGKVGADDSDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRGVRYASEKLNAKPGFFGTLVHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQTINEEEIQFLKTLSRGRSLLNRTIEKLDNSKTIPGDVAWRL 235


>gi|211827288|gb|AAH26611.2| Aars protein [Mus musculus]
          Length = 458

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 123/452 (27%), Positives = 196/452 (43%), Gaps = 53/452 (11%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEG 552
           ++   V+E V+GQ+  VV D+T FYAE GGQ+ D G  +        + + T    +  G
Sbjct: 1   REKMFVDEVVTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRG 60

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
            +V H     G L+    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS +
Sbjct: 61  GYVLHIGTIYGNLKVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLV 119

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTK 671
            PD LRFD T    +++ ++K  E+ VN +I    PV T+           G  A+    
Sbjct: 120 APDRLRFDFTAKGAMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDET 179

Query: 672 YNDRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           Y D VRVVS+               G + S   CGGTH+ ++       IV+E +I  GI
Sbjct: 180 YPDPVRVVSIGVPVSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGI 239

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASF---LK---VSQGNVVGRVEEIWE--------E 766
           RRI A+TG  A+  L   +   KSL++    +K       +V   + ++ E        +
Sbjct: 240 RRIVAVTGAEAQKALRKSETLKKSLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQ 299

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVN-------------------FMSHIISEVDSK 807
           ++K +     + L+  ++DL     ADV                     +  + S   +K
Sbjct: 300 WQKDEQRETLKSLKKVMDDLDRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAK 359

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
            L   +   +        ML  +  E  K + L  V ++  +R   A +  +  +  L  
Sbjct: 360 ALNEALKLFKTHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMD 418

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G GGG+   AQ+ G N     +A+    SF +
Sbjct: 419 GKGGGKDMSAQATGKNVGCLQEALQLATSFAQ 450


>gi|262301373|gb|ACY43279.1| ala-tRNA synthetase [Hexagenia limbata]
          Length = 236

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/237 (35%), Positives = 133/237 (56%), Gaps = 12/237 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF +++  E  +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRI-GGREAAHLVNMDDPDVLEIWNLVFIQFNRESDGELRLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+G ER+ +V+Q K +NYD D+F  +  A ++ TG                 + +RV+
Sbjct: 60  DCGLGYERLVSVIQNKRSNYDTDVFVPIFDAIQKGTGCPPYQGRVGAEDKDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    LG        L+  +   +G
Sbjct: 120 ADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPGFFATLVHVVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKL 390
             +PE+ +    + E +  E+++F KTL RG  LL+  +  L  + ++L G++A++L
Sbjct: 180 DTFPEVRRDPTAVVEVINEEEQQFLKTLARGRSLLNRTVERLGSETKVLPGEIAWRL 236


>gi|262301371|gb|ACY43278.1| ala-tRNA synthetase [Lynceus sp. 'Lyn']
          Length = 235

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           +++    +EIWNLVFM F ++      +LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRI-GGRDAAHLVNQDDPDVLEIWNLVFMTFNRETDGSLKVLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVI 275
           D GMG ER+ +V+Q K +NYD DLFK + +A ++ T  +               + +RV+
Sbjct: 60  DCGMGFERLVSVIQNKRSNYDTDLFKPIFEAIQKGTNARPYTGKVGAEDPECIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +AD   P N GRGYVLRRI+RR + YA   L         L+P +   +G
Sbjct: 120 ADHARTITIALADHGRPDNVGRGYVLRRILRRGVRYATEKLNAKPGFFAGLVPTVIQILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +   +I + +  E+ +F KTL RG  LL+  ++ LG  + L GD+A++L
Sbjct: 180 PTFPEVSRDPQVIIDIINDEEAQFLKTLTRGRNLLNRTINKLGDQKTLPGDIAWRL 235


>gi|262301385|gb|ACY43285.1| ala-tRNA synthetase [Polyzonium germanicum]
          Length = 235

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPC+EI +D+           + +    +EIWNLVF+QF ++      +LPK  +
Sbjct: 1   ETGPCGPCTEIHYDRIGERDA-ASLVNADVPDVLEIWNLVFIQFNRETDGSLRLLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVI 275
           DTGMGLER+ +V+Q K++NYD D F  +  A +  TG++               + +RV+
Sbjct: 60  DTGMGLERLISVVQNKSSNYDTDAFVPIFDAIQTSTGVRKYQGLVGAQDLDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P + GRGYVLRRI+RRA+ YA   L     ++  L+  + + +G
Sbjct: 120 ADHARTLTIALSDGGRPDSTGRGYVLRRILRRAVRYASEKLNAKPGVLAALVDVVVSLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    +++ +  E+ +F KTL RG  LL+  ++ LG   +L GDVA++L
Sbjct: 180 DTFPEVTKDPQSVKDIINEEEAQFLKTLSRGQHLLERTINKLGDQTVLPGDVAWRL 235


>gi|157813820|gb|ABV81655.1| putative AATS-ALA protein [Forficula auricularia]
          Length = 236

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 135/239 (56%), Gaps = 16/239 (6%)

Query: 165 ETGPCGPCSEIFFDQGECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           ETGPCGPCSE+ FD+   I G       +++    +EIWNLVF+Q+ +++      LPK 
Sbjct: 1   ETGPCGPCSELHFDR---IGGREVPHLVNQDDPDVLEIWNLVFIQYNRESDGSLKPLPKK 57

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHR 273
            ID GMG ER+ +V+QEK +NYD D+F  L +A ++         + G +      + +R
Sbjct: 58  HIDCGMGFERLVSVIQEKRSNYDTDIFTPLFEAIQKGTGSRPYQGLLGSEDSEGIDMAYR 117

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332
           V+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ +    L         L   +   
Sbjct: 118 VLADHARTLTIALADGGHPDNTGRGYVLRRILRRAVRFGTEKLNAKPGFFASLSDTVANL 177

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKL 390
           +G  +PE+++    I++ +  E+E+F KTL RG  LL   +S L    + + GDVA++L
Sbjct: 178 LGDQFPEVLKDPQSIKDIINEEEEQFLKTLSRGRNLLHRTISKLPADSKTIPGDVAWRL 236


>gi|189531576|ref|XP_001922082.1| PREDICTED: hypothetical protein LOC559142 [Danio rerio]
          Length = 725

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 82/308 (26%), Positives = 139/308 (45%), Gaps = 29/308 (9%)

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL 203
           +G++  +I+  +  DNFW M +TGPCGPCSEI +D+           + +    +EIWNL
Sbjct: 44  AGMNQSRILPGSMKDNFWEMGDTGPCGPCSEIHYDRI-GGRDAAHLVNMDDPNELEIWNL 102

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ----- 258
           VF+QF ++++     L K SIDTGMGLER+ +VLQ K +NYD DLF    +A ++     
Sbjct: 103 VFIQFNRESETVLKPLSKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGAR 162

Query: 259 ----VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
                   +      + +RV+ DH R+ +  + DG  P N G                  
Sbjct: 163 AYTGKVSAEDTDGIDMAYRVLADHARTITIALYDGGRPDNTG-------------RGLLS 209

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           LG+       +        G A+PEL +   ++++ +  E+ +F KTL RG  +LD  + 
Sbjct: 210 LGFAVECTCTVAR------GDAFPELRKDPYMVKDIINEEEAQFLKTLSRGRRILDRKIQ 263

Query: 375 HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
            LG+   +   + F    +  L ++  Q++             ++      +  +     
Sbjct: 264 SLGESTTIPEGMLFTGASSLHLHINGEQEVGDRVKSTSAMPKKYSDNSNMGQLSSSCKPS 323

Query: 435 GLGSGTTE 442
               G+ +
Sbjct: 324 RNDCGSVD 331



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVP 45
            + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  
Sbjct: 6  TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQ 48


>gi|299561742|gb|ADJ36943.1| alanyl-tRNA synthetase [Drosophila sp. JFG-2010]
          Length = 137

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/139 (40%), Positives = 77/139 (55%), Gaps = 10/139 (7%)

Query: 91  EMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKK 142
           EMLGN+SFG YFK      AW  LT+   L + RLY+T +  DE        E  ++W  
Sbjct: 1   EMLGNWSFGDYFKXEICSWAWQFLTERLRLPKDRLYVTYFGGDEASGLQPDLECKQMWLD 60

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWN 202
           + GL+ + I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIWN
Sbjct: 61  L-GLTPEHILPGSMKDNFWEMGETGPCGPCSELHFDRV-GGRSVPELVNMDDPDVLEIWN 118

Query: 203 LVFMQFEQQNKQERFILPK 221
           LVF+QF +++      LPK
Sbjct: 119 LVFIQFNRESDGSLRPLPK 137


>gi|328880599|emb|CCA53838.1| Alanyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 196

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 66/185 (35%), Positives = 98/185 (52%), Gaps = 16/185 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I  TF+E+F++ GH  +  S+L+P     ++FT SGM P      G+  P+ + +
Sbjct: 1   MKTEQIVRTFVEYFEERGHRRITGSTLLPPPGDPVLFTTSGMHPLTPYLEGRPHPLGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG    H T FEMLG +S G Y   R++   + LLT+ F +D
Sbjct: 61  VDVQRCLRT----TDLDEVG-DATHLTVFEMLGTWSLGDYEGPRSLDWGYGLLTEGFGID 115

Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              L+ TVY      + D+ + +LW+   G+  +    +T  DN+WS   TGPCGP SEI
Sbjct: 116 PGLLHATVYSGDGRTERDDASLELWQD-RGVPVE----LTLQDNWWSNGPTGPCGPDSEI 170

Query: 176 FFDQG 180
           F  + 
Sbjct: 171 FLWER 175


>gi|321442097|gb|ADW85463.1| ala-tRNA synthetase [Spodoptera frugiperda]
          Length = 234

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 131/236 (55%), Gaps = 12/236 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIEVGTGTRPYTGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHVVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +  L + + +  E+ +F KTL RG  LL+  +  L   +++ GDVA++L
Sbjct: 180 DVFPEITKDPLSLIQLINEEELQFLKTLTRGRNLLNRTIEKLN-GKVIPGDVAWRL 234


>gi|262301403|gb|ACY43294.1| ala-tRNA synthetase [Tomocerus sp. 'Tom2']
          Length = 236

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 88/237 (37%), Positives = 134/237 (56%), Gaps = 12/237 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           +++    +E+WNLVF+QF +++      LPK  I
Sbjct: 1   DTGPCGPCSEIHFDRI-GGRNAASLVNQDDPDVLEVWNLVFIQFNRESDGSLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMGLER+ +V+Q K +NYD DLF  + +A  Q TG +               + +RV+
Sbjct: 60  DCGMGLERIVSVIQGKRSNYDTDLFVPIFEAIRQATGARPYTGKVGAEDTDGLDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   L     L   L+  +   +G
Sbjct: 120 ADHVRTLTIALSDGGRPDNTGRGYVLRRILRRGVRYAIEKLHGKPGLFARLVNVVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKL 390
             +PE+ +    + + +  E+ +F KTL+RG  LL+  +S L   +  L GDVA+++
Sbjct: 180 DTFPEVRKDPQSVMDVINEEEAQFLKTLNRGRNLLERTVSKLTSGETTLPGDVAWRM 236


>gi|51102328|gb|AAT95877.1| alanyl-tRNA synthetase [Entamoeba moshkovskii]
          Length = 606

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 152/693 (21%), Positives = 238/693 (34%), Gaps = 147/693 (21%)

Query: 50  FTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKE 104
            TGQ +P    +   Q C+R     NDLDN+G + RH + F M+G   F       YFKE
Sbjct: 3   VTGQLEPPANPLICPQFCLR----FNDLDNIGISGRHFSGFIMIGLQVFNSPQKYVYFKE 58

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
             +      LTKE +++                                IT  ++ W   
Sbjct: 59  ECVDYNLRWLTKELEINVDD-----------------------------ITLIEDVWCGG 89

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERFILPKM 222
             G  GP  E+F                   + +E+ N+VF Q++  +  K E   L   
Sbjct: 90  --GNLGPSIEMFV------------------KGLEVGNMVFTQYKILDFVKGEFEPLKHQ 129

Query: 223 SIDTGMGLERMATVLQEKTNNY---------------DIDLFKHLIQ------ASEQVTG 261
            ID G+GLER+  ++     +Y               ++ L   +I           +  
Sbjct: 130 VIDVGIGLERIPWLINGTPTSYLEAFPGAVKYLQSKLEVTLESEVISKFAPFCCLLNLDE 189

Query: 262 MKYEGNNI----------------------VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            K                             +  +I DH R+    I DG LP+  G G 
Sbjct: 190 CKDVNKAWADIAKECGVENREILQTAIQPTRDLYIIADHSRTMLIAIYDGALPSAVGGGA 249

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI----QAKLLIEETLRSED 355
            LR I+RR        G+ E L          E      E +           + +  E 
Sbjct: 250 NLRNIVRRMFSILHKNGWWEKLGGMDGLMELFEWHKRDLEKLYGAFDEYKSFRKIIEMEY 309

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           +R+  T       +  +L    K  +L  D       ++GL  D + +I           
Sbjct: 310 QRWCTTDLESQQKVQALLKK--KKGVLVVDDWIVAMKSYGLSPDKISEISK-----LPVP 362

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +    L E   +           T +         +  T  + YD     +F  E   V
Sbjct: 363 DNLYTKLAELEDQRVKMLPTELYETAD---------FQETIELFYDNGDLREFNSEIITV 413

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L +                             G    V+  ++ FY   GGQ  DTG   
Sbjct: 414 LEKVDEKCKPT---------------------GIHNIVILKESAFYPIGGGQDNDTGKMK 452

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRRQLSINHSATHLLH 594
            DGI   +T V+K  + I  H     +        S+   ID Q R QL  +H+ATH++H
Sbjct: 453 IDGITYDVTYVEKVGKCILHHLDTDLKNWNDLKGKSVTAYIDDQRRNQLRSHHTATHIIH 512

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            A   +LG H+ QNG+  T +    D+TH   IT  E   IE   N+++ +NL +   ++
Sbjct: 513 QAAHQVLGPHIWQNGAKKTVEEAHLDITHFASITREEENEIEKLANEMVRKNLKINKFVL 572

Query: 655 NREDAIASGAAALLG--TKYNDRVRVVSVEYED 685
           ++E+A      +L        + VR+V +   D
Sbjct: 573 SKEEAEKKYGFSLYQGGVVAGNTVRIVDIAGFD 605


>gi|262301325|gb|ACY43255.1| ala-tRNA synthetase [Argulus sp. Arg2]
          Length = 235

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 94/236 (39%), Positives = 138/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           +++    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   DTGPCGPCSEIHFDRI-GGRNAAALVNQDDPDVLEIWNLVFIQFNRESDGSLHLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVI 275
           D G+GLER+ +V+Q+K +NYD D F  L +A +Q T         G+   G   + +RVI
Sbjct: 60  DCGLGLERLVSVIQKKXSNYDTDAFTPLFKAIQQKTGCREYQGKVGVDDIGGIDMAYRVI 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L      +  L+P +   +G
Sbjct: 120 ADHVRTLTIALADGGRPDNSGRGYVLRRILRRAVRYATEKLNAKSGTLSSLIPVVVESLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I+  +  E+ +F KTL RG  LL   +S LGK  +  GD+A++L
Sbjct: 180 DVFPEIKRGVDDIKNIIDEEETQFLKTLSRGHRLLSAQVSKLGKGSLFPGDIAWRL 235


>gi|262301329|gb|ACY43257.1| ala-tRNA synthetase [Armadillidium vulgare]
          Length = 235

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           +++    +EIWNLVF+QF ++N      LPK  I
Sbjct: 1   DTGPCGPCSEIHFDRIGNRNAST-LVNQDDPNVLEIWNLVFIQFNRENDGSLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ ++LQ K +NYD DLF  L  A +  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSILQNKNSNYDTDLFTPLFNAIQNKTGIRPYTGKVGDEDIDGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG LP N GRGYVLRRI+RR + + A  L     +   L+  +   + 
Sbjct: 120 ADHARTLTIXLSDGGLPDNTGRGYVLRRILRRGVRFAAEKLKAKPSIFASLIDDVVITLK 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I++T+  E+++F KTLDRG  LL+  +  LG    + GDVA++L
Sbjct: 180 DIFPEVSKDVDYIKDTINEEEQQFLKTLDRGHKLLERTIHKLGXSNNIPGDVAWRL 235


>gi|51102326|gb|AAT95876.1| alanyl-tRNA synthetase [Entamoeba invadens]
          Length = 607

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 155/696 (22%), Positives = 238/696 (34%), Gaps = 152/696 (21%)

Query: 50  FTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKE 104
            TGQ +P    +   Q C+R     NDLDN+G + RH + F M+G   F       +FKE
Sbjct: 3   VTGQLEPPANPLICPQFCLR----FNDLDNIGISGRHFSGFIMIGLQVFNSPQKYVFFKE 58

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
             +      LTKE ++D                                IT  ++ W   
Sbjct: 59  ECVDYNLRWLTKELEIDPDD-----------------------------ITLIEDVWCGG 89

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERFILPKM 222
             G  GP  E+F                   R +E+ N+VF Q++  +  K E   L   
Sbjct: 90  --GNLGPSIEMFV------------------RGLEVGNMVFTQYKILDFVKGEFEPLKHQ 129

Query: 223 SIDTGMGLERMATVLQEKTNNY-------------------------------------D 245
            ID G+GLER+  ++   + +Y                                     +
Sbjct: 130 VIDVGIGLERIPWLVNGTSTSYLEAFPCAVKYLREKLNVTLESDVITKFAPYCCLLNLDE 189

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVN------HRVIVDHLRSSSFLIADGILPANEGRGY 299
            D          +  G++                ++ DH RS    I DG LP+  G G 
Sbjct: 190 CDDVNKAWGEIAKECGVENREILENAIKPARDLYIVADHSRSLLIAIYDGALPSAVGGGA 249

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI----QAKLLIEETLRSED 355
            LR I+RR     +  G+ E L          EM     E I           + +  E 
Sbjct: 250 NLRNIVRRLFSVLKNNGWWEMLGGMDGLMELFEMHKRDLEKIYGKFDEYKSFRKIIEMEY 309

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           +R+  T                K  +L  D       + GL  D + ++           
Sbjct: 310 QRWITTDAESQQK--VQQLLKKKKGVLTVDDWITAMKSFGLSPDKISEVSK-----MPVP 362

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +    + E  ++           T +         +  T+ + Y+     KF       
Sbjct: 363 DNLYSKIAEIEAQHVKLLPTELYETAD---------FPETKELFYEDGNLRKF------- 406

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE--VVFDQTPFYAEAGGQLGDTGC 533
                           +  I+   E V E   G K    V+ DQ+ FY   GGQ  DTG 
Sbjct: 407 -------------EGKIVTIL---EQVNEKGKGTKNFNLVILDQSAFYPIGGGQDNDTGK 450

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATH 591
              DG    +T V+K  + I  H +             +    +D   R QL  +H+ATH
Sbjct: 451 MEIDGKMYDVTYVEKVGKCILHHLSGNFAEKVETLIGKTATGYVDDARRNQLRAHHTATH 510

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           ++H A   +LG HV QNG+  T      D+TH   IT  E   IE   N+I+ +NL V  
Sbjct: 511 VIHQAAHQVLGPHVWQNGAKKTVKEAHLDITHFASITREEENQIEKLANEIVRKNLKVNK 570

Query: 652 RIMNREDAIASGAAALLG--TKYNDRVRVVSVEYED 685
            ++++EDA      +L        + VR+V ++  D
Sbjct: 571 FVLSKEDAERKYGFSLYQGGVVAGNTVRIVDIDNFD 606


>gi|299561760|gb|ADJ36952.1| alanyl-tRNA synthetase [Pipunculus sp. JFG-2010]
          Length = 136

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 10/138 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKI 143
           MLGN+SFG YFK+     AW+ LT    L + RLY+T +  DE        E  + W  +
Sbjct: 1   MLGNWSFGDYFKKEICAWAWEFLTNRLKLPKERLYVTYFGGDEDSGLSPDLECRQTWIDL 60

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL 203
            GL  + ++  +  DNFW M E+GPCGPCSE+ FD+           + +    +EIWNL
Sbjct: 61  -GLKPEHVLPGSMKDNFWEMGESGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNL 118

Query: 204 VFMQFEQQNKQERFILPK 221
           VF+Q+ ++      +LP+
Sbjct: 119 VFIQYNREADGSLKMLPR 136


>gi|262301381|gb|ACY43283.1| ala-tRNA synthetase [Periplaneta americana]
          Length = 235

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           +++    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHFDRI-GGRDAAHLVNQDDPDVLEIWNLVFIQFNRESDGSLRSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K +NYD DLF  L  A ++ TG                 + +RV+
Sbjct: 60  DCGLGLERLVSVIQQKRSNYDTDLFMPLFDAIQKGTGAPPYKGRVGEEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+  +   +G
Sbjct: 120 ADHARTLTISLSDGGRPDNTGRGYVLRRILRRGVRYATEKLNAKPGFFASLVNTVVXILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +  L + + +  E+ +F KTL RG  LL+  +  LG  + + GDVA++L
Sbjct: 180 DTFPEVKKDPLSVMDIINEEEAQFLKTLSRGRNLLNRTILKLGDSKTVPGDVAWRL 235


>gi|300214774|gb|ADJ79190.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 214

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/215 (28%), Positives = 110/215 (51%), Gaps = 8/215 (3%)

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGGTHV +T EI L  IVSES + AG+RRIEA+T + A   L  +++ L+  A  LK
Sbjct: 1   MEFCGGTHVDNTNEIGLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELK 60

Query: 751 -VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV 804
            V    V  ++E++ E+ + L+      + +   +       +  +I     ++  ++  
Sbjct: 61  IVQIKEVPRKIEQLQEQVKLLEQQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVS 120

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVL 863
              +L+ + D  ++K  S +++L   + + K +++  ++ D +   + A DL +  A  +
Sbjct: 121 GMSQLRQLADQWKEKQLSDVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKV 180

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGG GGRP +AQ+GG       +A+     +L K
Sbjct: 181 GGGG-GGRPDLAQAGGKKPEGIQEALKAAEDWLSK 214


>gi|262301397|gb|ACY43291.1| ala-tRNA synthetase [Skogsbergia lerneri]
          Length = 234

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 134/236 (56%), Gaps = 12/236 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+QF +        LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRI-GGRDAASLVNMDDPNVVEIWNLVFIQFNRDTDGGLNPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMG ER+ +++QE+++NYD  LF  + +A ++ TG++    +          + +RV+
Sbjct: 60  DTGMGFERLLSIIQERSSNYDTGLFTPIFEAIQKETGVRAYTGHVGADDTDGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N+GRGYVLRRI+RR + YA   LG    L+  L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNQGRGYVLRRILRRGVRYATEKLGAKPGLLGKLVHTVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + + +  E+E F KTL RG  LL   +S L     L GDVA++L
Sbjct: 180 EQFPEVTKDPQSVIDIINEEEETFLKTLTRGQKLLSRTISKLN-GTTLPGDVAWRL 234


>gi|326676062|ref|XP_003200495.1| PREDICTED: hypothetical protein LOC100535229 [Danio rerio]
          Length = 1296

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 139/306 (45%), Gaps = 32/306 (10%)

Query: 146 LSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVF 205
           +   +I+  +  DNFW M +TGPCGPCSEI +D+           S      +EIWNLVF
Sbjct: 634 MEESRILPGSMKDNFWEMGDTGPCGPCSEIHYDRI-GGRDAAHLVSMNDPNVLEIWNLVF 692

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ------- 258
           +QF ++++     LPK SIDTGMGLER+ +VLQ K +NYD DLF    +A ++       
Sbjct: 693 IQFNRESETVLKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAY 752

Query: 259 --VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
               G +      + +RV+ DH R+ +  + DG  P N GR                  G
Sbjct: 753 TGKVGAEDTDGIDMAYRVLADHARTITIALYDGGRPDNTGR------------------G 794

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
            TE L+  +        G A+PEL +   ++++ +  E+ +F KTL RG  +LD  +  L
Sbjct: 795 PTEMLLFGISSGQ----GDAFPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSL 850

Query: 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
           G+   +   + F    +  L +   Q++             ++      +  +       
Sbjct: 851 GESTTIPEGMLFTGASSLHLHIKGEQEVGDRVKSTSAMPKKYSDNSNMGQLSSSCKPSRN 910

Query: 437 GSGTTE 442
             G+ +
Sbjct: 911 DCGSVD 916



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 146 LSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL 203
           +   +I+  +  DNFW M +TGPCGPCSEI +D            + +    +EIWNL
Sbjct: 56  MEESRILPGSMKDNFWEMGDTGPCGPCSEIHYDHI-GGRDAAHLVNMDDPNKLEIWNL 112



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVP 45
            + IR  F++FF+ + H+ + SS+ IP +DPTL+F N+GM  
Sbjct: 6  TAAQIREKFIDFFRCHEHQYVHSSATIPLDDPTLLFANAGMNQ 48



 Score = 41.7 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPS 25
             + IR  F++FF+++ H++  S
Sbjct: 615 TAAQIREKFIDFFRRHEHQMEES 637


>gi|321442045|gb|ADW85437.1| ala-tRNA synthetase [Alucita sp. JCR-2011]
          Length = 235

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRNAAHLVNMDDPDVLEIWNLVFIQFNREKDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A EQ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIEQGTGVRPYSGKVGDEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFGSLVRTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQIINEEEIQFLKTLSRGRNLLNRTIEKLNNSKIIPGDVAWRL 235


>gi|157813822|gb|ABV81656.1| putative AATS-ALA protein [Lithobius forticatus]
          Length = 236

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/237 (36%), Positives = 137/237 (57%), Gaps = 12/237 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+Q+ ++   +   LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRI-GGRDAKHLVNADDPDVLEIWNLVFIQYNREVGGKLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K++NYD D+F  + +A E+  G +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQQKSSNYDTDIFVPIFKAIEEKMGARPYEGKLGADDTEGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L     L   L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYASEKLKAKPGLFASLVDDVVATLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKL 390
             +PE+ +   ++++ +  E+ +F KTL+RG  LL+  +  L  +  +L GDVA++L
Sbjct: 180 GTFPEVTKDPQMVKDIINDEETQFLKTLNRGRRLLERTIGKLTSRQTVLPGDVAWRL 236


>gi|321442049|gb|ADW85439.1| ala-tRNA synthetase [Argyrotaenia alisellana]
          Length = 235

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRNAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLRPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFVPIFKAIEVGTGTRPYSGKVGDEDVDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVHTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I ET+  E+ +F KTL RG  LL+  +  LG  + + G+VA++L
Sbjct: 180 DVFPEIKKDPESIIETINEEEIQFLKTLTRGRNLLNRTIEKLGDSKTVPGEVAWRL 235


>gi|321442079|gb|ADW85454.1| ala-tRNA synthetase [Lagoa crispata]
          Length = 235

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E+ TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIEEGTGTRPYTGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKSGFFASLVYTVVALLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L    I+ GD+A++L
Sbjct: 180 DVFPEIKKDPESIIQIINEEEIQFLKTLSRGRNLLNRTIEKLNNTNIVPGDLAWRL 235


>gi|321442061|gb|ADW85445.1| ala-tRNA synthetase [Cyclotorna sp. JCR-2011]
          Length = 235

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 91/236 (38%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGNRDA-AHLVNMDDPDVLEIWNLVFIQFNRETDGTLKLLPKRHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L +A E+ T M+               + +RV+
Sbjct: 60  DCGLGLERLISVIQNKRANYDTDLFIPLFKAIEKGTSMRPYSGKVGKEDIDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYACEKLNAKPGFFGSLVNVVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I ET+  E+ +F KTL RG  LL+  +  L   +I++GDVA++L
Sbjct: 180 EVFPEIKKDPKSIIETINEEEIQFLKTLLRGRNLLNRTIDKLNSSKIVSGDVAWRL 235


>gi|321442099|gb|ADW85464.1| ala-tRNA synthetase [Synemon plana]
          Length = 235

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGD-REAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A +  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIQAGTGVRSYTGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSSLVNTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DVFPEIKKDPKSIIQIINEEEIQFLKTLSRGRNLLNRTIDRLNDSKTIPGDIAWRL 235


>gi|321442063|gb|ADW85446.1| ala-tRNA synthetase [Dalcerides ingenita]
          Length = 235

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRI-GGREAAHLVNMDDPDVLEVWNLVFIQYNREKDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           D G+GLER+ +V+Q K +NYD DLF  L +A E  TG K               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRSNYDTDLFVPLFKAIESGTGAKPYTGKVGAEDVNGTDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVYTVVDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DTFPEIKKDPEAIIHIINEEEIQFLKTLTRGRNLLNRTIDKLNDTKTVPGDIAWRL 235


>gi|321442043|gb|ADW85436.1| ala-tRNA synthetase [Apoda biguttata]
          Length = 235

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLSLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A +  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFEAIQIGTGVRPYSGKVGVEDTDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSSLVHTVVKLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DVFPEIKKDPESIIHIIDEEEIQFLKTLSRGRNLLNRTIEKLNNSKTVPGDLAWRL 235


>gi|321442065|gb|ADW85447.1| ala-tRNA synthetase [Acraga philetera]
          Length = 235

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRI-GGREAAHXVNMDDPDVLEVWNLVFIQYNREKDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           D G+GLER+ +V+Q K +NYD DLF  L +A E  TG K               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRSNYDTDLFVPLFKAIETGTGAKPYTGKVGAEDVDGTDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTISLSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVXTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL+RG  LL+  +  LG    + GD+A++L
Sbjct: 180 DTFPEIKKDPEAIIHIINEEEIQFLKTLNRGRNLLNRTIEKLGDTXTVPGDIAWRL 235


>gi|330798390|ref|XP_003287236.1| hypothetical protein DICPUDRAFT_151319 [Dictyostelium purpureum]
 gi|325082755|gb|EGC36227.1| hypothetical protein DICPUDRAFT_151319 [Dictyostelium purpureum]
          Length = 183

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 72/126 (57%), Positives = 86/126 (68%), Gaps = 11/126 (8%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
             FL +F+ N  + LPSSSLIP ND TL+FTN+GMV FKN FT  E+  Y+ VTT QKCV
Sbjct: 2   RKFLNYFETNKRKRLPSSSLIPHNDSTLLFTNAGMVQFKNQFTALEESKYKLVTTSQKCV 61

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYIT 128
           RAGG  NDL+NVG T RHHTFFEML            +IQ AW+LLTK+F L + RL I+
Sbjct: 62  RAGGNQNDLENVGYTARHHTFFEML-----------DSIQQAWNLLTKDFGLPKERLAIS 110

Query: 129 VYDEDE 134
           V + DE
Sbjct: 111 VLEGDE 116


>gi|189531570|ref|XP_001922060.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Danio rerio]
          Length = 305

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 125/263 (47%), Gaps = 32/263 (12%)

Query: 146 LSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVF 205
           +   +I+  +  DNFW M +TGPCGPCSEI +D+           + +    +EIWNLVF
Sbjct: 56  MEESRILPGSMKDNFWEMGDTGPCGPCSEIHYDRI-GGRDAAHLVNMDDPNVLEIWNLVF 114

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ------- 258
           +QF ++++     L K SIDTGMGLER+ +VLQ K +NYD DLF    +A ++       
Sbjct: 115 IQFNRESETVLKPLSKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAY 174

Query: 259 --VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
                 +      + +RV+ DH R+ +  + DG  P N GRG     +   +        
Sbjct: 175 TGKVSAEDTDGIDMAYRVLADHARTITIALYDGGRPDNTGRGPTEMLLFGISSRQ----- 229

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
                            G A+PEL +   ++++ +  E+ +F KTL R   +LD  +  L
Sbjct: 230 -----------------GDAFPELRKDPDMVKDIINEEEAQFLKTLSRRRRILDRKIQSL 272

Query: 377 GKDEILNGDVAFKLYDTHGLPLD 399
           G+   +   + F    +  L ++
Sbjct: 273 GESTTIPEGMLFTSGSSLHLHIN 295



 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNI 49
            + IR  F++  +++ H+ + SS+ IP +DPTL+F N+GM  F N+
Sbjct: 6  TAAQIREKFIDLIRRHEHQYVHSSATIPLDDPTLLFANAGMNQFVNV 52


>gi|157813828|gb|ABV81659.1| putative AATS-ALA protein [Narceus americanus]
          Length = 235

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 138/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPC+EI +D+        P  + +    +EIWNLVF+QF ++N     +LPK  +
Sbjct: 1   DTGPCGPCTEIHYDRI-GGRDAAPLVNADVPDVLEIWNLVFIQFNRENDGSLRVLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVI 275
           DTGMGLER+ +V+Q KT+NY+ D F  +  A ++ TG +               + +RV+
Sbjct: 60  DTGMGLERVVSVIQNKTSNYETDCFMPIFDAIQKATGCRTYQGLLGAEDVDGVDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   L     ++  L+  +   +G
Sbjct: 120 ADHIRTLTIALSDGGRPDNVGRGYVLRRILRRAIRYSTEKLHSEPGMLASLVDVVIDTLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             + EL +    +++ +  E+ +F KTL RG  LL+  ++ L   +IL GD+A++L
Sbjct: 180 DMFVELKKDPQSVKDIIIEEEAQFLKTLSRGQRLLERTINKLSDQKILPGDIAWRL 235


>gi|157813842|gb|ABV81666.1| putative AATS-ALA protein [Prodoxus quinquepunctellus]
          Length = 235

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/236 (38%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  I
Sbjct: 1   ETGPCGPCSELHFDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKFLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +  ++ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQGKRANYDTDFFMPLFEEIQKGTGVRAYTGKVGDDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTVALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVHTVVKCLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    I ET+  E+ +F KTL RG  LL+   + LG   I+ GDVA++L
Sbjct: 180 DTFPELKRDPQSIIETINEEEIQFLKTLSRGRNLLNRTFTKLGNSTIVPGDVAWRL 235


>gi|37521918|ref|NP_925295.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|35212917|dbj|BAC90290.1| gll2349 [Gloeobacter violaceus PCC 7421]
          Length = 449

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 103/418 (24%), Positives = 177/418 (42%), Gaps = 12/418 (2%)

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
           T  V + V  I+  G+   EAV+G +V VV   +PF AE  GQ  D G  +     +   
Sbjct: 31  TLAVPAQVLGILAGGKPCAEAVAGAEVVVVLSHSPFLAEGSGQACDQGV-LAAENLVVAV 89

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           +  ++   +++H   V+RG L+   ++   ++   RR +  +HSA HLLH AL  +LG+ 
Sbjct: 90  EAVRRQGAVYLHKGKVQRGELKVGETVQAQVNAIRRRLVQTHHSAVHLLHAALRRVLGAE 149

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           + Q G+    D LRF+    + +   E+  +E  VN  + +  P+    M  E A   GA
Sbjct: 150 IEQRGALAASDRLRFEFAAPQSLGGQEVARVEQVVNLWVLEGHPLGVETMPAEKARQIGA 209

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
               G +Y ++VRV+             LCGGTHVS+T EI    IV  S   AG+RR+E
Sbjct: 210 LPFPGERYGEQVRVIGTPEI-----GFELCGGTHVSNTIEIGPFKIVGHSEPEAGVRRLE 264

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           A+ G     +L   ++  + L    K     +  R+  +  + +         K+ L + 
Sbjct: 265 AVAGLALLDYLRAHEQVTRILGEQFKAPLAQLPERLGAVLTQAQWAISQVEDLKVALALA 324

Query: 785 DLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
                     +      +   + + +   L +  +    K+  G ++L         +  
Sbjct: 325 RCEACLGEVEQYGQYRVLVADLGDTEPAALAAAAEGTLSKLGEGTVVLGSSPGADAVAFT 384

Query: 840 IVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +  +   +    NA   A   A++ GGG   G   +AQ+ G    +   A+    + L
Sbjct: 385 VAFSPKAVGLGLNAGQFAAALAQLTGGGDTQGNAQIAQAAGRQPTRLKAALDLAFAKL 442


>gi|321442077|gb|ADW85453.1| ala-tRNA synthetase [Lacturidae gen. sp. JCR-2011]
          Length = 235

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG K               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIEIGTGAKPYSGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRGVRYATEKLNAKPGFFASLVHTVVQLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I E +  E+ +F KTL RG  LL+  +  LG  +++ GD+A++L
Sbjct: 180 DVFPEIKKDPESIIEIINEEEIQFLKTLIRGRNLLNRTIEKLGSLKVIPGDLAWRL 235


>gi|56807379|ref|ZP_00365361.1| COG0013: Alanyl-tRNA synthetase [Streptococcus pyogenes M49 591]
          Length = 369

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 133/396 (33%), Positives = 196/396 (49%), Gaps = 35/396 (8%)

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
            FKLYDT+G P+++ +++    G   ID   F  A++EQ+ RARA  +  GS   +    
Sbjct: 1   MFKLYDTYGFPVELTEELAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--E 57

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
           +L      ++F  YD                       T  + S +  I+   E  E   
Sbjct: 58  TLAGIVEESRFE-YD-----------------------TYSLESSLSVIIADNERTEAVS 93

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGIL 565
            GQ   +VF QTPFYAE GGQ+ DTG    D    +      +KA      H +     L
Sbjct: 94  EGQ-ALLVFAQTPFYAEMGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASL 152

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               +  L I+ + R  +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH +
Sbjct: 153 SVGTNYTLEINKERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFE 212

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +++ EL+ IE  VN+ I   L + T   + E A   GA AL G KY   VRVV +    
Sbjct: 213 AVSNEELRHIEQEVNEQIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI---- 268

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G +S  LCGGTH++++ EI L  IV E  I +G RRI A+TG++A      Q++ LK +
Sbjct: 269 -GNYSVELCGGTHLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEI 327

Query: 746 ASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           A+ +K  Q  +   +V+ + +  R LQ  +A+ K +
Sbjct: 328 AATVKAPQLKDAAAKVQALSDSLRDLQKENAELKEK 363


>gi|262301317|gb|ACY43251.1| ala-tRNA synthetase [Armillifer armillatus]
          Length = 234

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 12/236 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           + GPCGPCSEI +D+           ++     +EIWNLVF+Q+ +++      LP   I
Sbjct: 1   DVGPCGPCSEIHYDRIGNRDA-SHLVNKNDPNVLEIWNLVFIQYNRESNGNLHFLPSKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVI 275
           D G+G ER+ +V+Q   +NYD DLF  L +  ++ T         G++        +RV+
Sbjct: 60  DCGLGFERLVSVIQGTLSNYDTDLFSPLFECIQKKTGLPPYSGKVGIEDSSGYDTAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ Y          L+  L+P +   + 
Sbjct: 120 ADHARTLTVALADGGRPDNTGRGYVLRRILRRAVRYCCDKFKCKPGLLSSLVPVVIHTLK 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PEL + + +I++ + +E+  F KTL RG +LL   +  L    IL G VA+KL
Sbjct: 180 NIFPELSKNQEIIQDLINTEEVLFLKTLKRGQLLLKRAIEGLP-KNILPGQVAWKL 234


>gi|157813834|gb|ABV81662.1| putative AATS-ALA protein [Thulinius stephaniae]
          Length = 235

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPC+EI FD+           +++    +EIWNLVF+QF ++      +LP+  I
Sbjct: 1   ETGPCGPCTEIHFDRIGNRDASQ-LVNQDDPDVLEIWNLVFIQFNREADGSLSLLPRKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMG ER+ +V+Q K +NYD D+F  +  A E+ TG +               + +RV+
Sbjct: 60  DTGMGFERLVSVVQNKRSNYDTDVFVPIFAAIEKGTGSRPYTGKIGAEDVDKVDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+    ++DG  P N GRGYVLRRI+RRA+ YA   L      +  L+P +   +G
Sbjct: 120 ADHIRNLVIALSDGGRPDNVGRGYVLRRILRRAIRYAKEKLNAKPGFLSGLVPQVSETLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            A+PE+ +    +   +  E+ +F +TL RG  LL+  ++ +G  + L GDVA++L
Sbjct: 180 EAFPEVKKDPETVARIIEEEESQFLRTLTRGRRLLERTIAQMGDCKTLPGDVAWRL 235


>gi|241998228|ref|XP_002433757.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215495516|gb|EEC05157.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 419

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 100/416 (24%), Positives = 174/416 (41%), Gaps = 51/416 (12%)

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
             C   + +   +T+V  +   +      +  G LR    L L ID Q R+ +  NH+ T
Sbjct: 1   MTCETNEDLEFAVTEVHTQGGYVVH-IGRLISGTLRVGDKLKLAIDEQRRKLVMNNHTGT 59

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+L+ AL  +L +   Q GS + PD LRFD  + KP++ AE+K+ E +  ++I++N  V 
Sbjct: 60  HILNFALRKVLTAEADQRGSLVAPDRLRFDFANKKPMSPAEVKAAEQSAVELISKNGEVY 119

Query: 651 TRI-MNREDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSALCGGTH 698
            +           G  A+    Y D VRVVS+               G + S   CGGTH
Sbjct: 120 AKDSPLSIAKAIQGLRAVFNETYPDPVRVVSIGVPVDDLMADPSSPAGSLTSIEFCGGTH 179

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD------------------- 739
           +   G +    I +E +I  GIRRI A+TG  A   L   +                   
Sbjct: 180 LKRAGHVGDFVITTEEAIAKGIRRIVALTGPEAAKALKKAEHYQNEVNRIKAEGAKVTQA 239

Query: 740 -------EKLKSLASFLKV------SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
                  ++L  L   +         +  +   ++ + ++   L   +  +  Q+ +E++
Sbjct: 240 AQGKELVKQLVELTEEISQSNISYWKKDELRTELKNLKKQLDDLDRSNKAQAQQMAIENV 299

Query: 787 SC--HKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVV 842
                +  D  ++ H +    ++K L + +  ++    +   M      E  K   L  V
Sbjct: 300 KKLLEQKKDSEYIVHALEVGDNAKALDAALKQVRTITPNAAAMFFSCDAEKGKVICLSSV 359

Query: 843 TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +D++ R   A    +  ++V+ GG GGGR   AQ+ G N +  D+A+    +F K
Sbjct: 360 PKDIVARGLTANGWIKEVSEVI-GGKGGGREESAQAIGNNVSSLDKALEVAHNFAK 414


>gi|262301367|gb|ACY43276.1| ala-tRNA synthetase [Leiobunum verrucosum]
          Length = 235

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 95/236 (40%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+Q+ +++      LPK  +
Sbjct: 1   ETGPCGPCSEIHFDRI-GGRQASHLVNADVPDVLEIWNLVFIQYNRESDGSLKQLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVI 275
           DTGMG ER+ +V+QEK +NYD D F  + +A EQ TG            EG   + +RV+
Sbjct: 60  DTGMGFERLVSVIQEKPSNYDTDCFMPIFKAIEQATGTRXYTGKVGNDDEGMIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRR++RRA+ +A   L     +   L+P +   +G
Sbjct: 120 ADHARTLTVALADGGTPDNTGRGYVLRRVLRRAVRFATEKLNAKPGMFAQLVPVVIESLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    I + +  E+ +F KTL RG  LL+  +S L   +IL GDVA++L
Sbjct: 180 DVFPELSKDPNSIMDIINDEEAQFLKTLSRGHKLLERTISKLDNSKILPGDVAWRL 235


>gi|150391131|ref|YP_001321180.1| threonyl/alanyl tRNA synthetase, SAD [Alkaliphilus metalliredigens
           QYMF]
 gi|149950993|gb|ABR49521.1| Threonyl/alanyl tRNA synthetase, SAD [Alkaliphilus metalliredigens
           QYMF]
          Length = 403

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/403 (22%), Positives = 153/403 (37%), Gaps = 26/403 (6%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           I+       +  VV D+T FY E GGQ  DTG      +     D  ++     +     
Sbjct: 20  IINTVEKEGQYHVVLDETYFYPEGGGQPSDTGTIDSIPVIFVYEDETQETIYHVLEKKPN 79

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           +         +  +ID+  R      H   HLL  ++  +        G  ++      D
Sbjct: 80  KL------KRVTCSIDWNRRYDHMQQHLGQHLLSASIFELFNG--VTVGFHLSEHYCTID 131

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +   K +    +   E  VN  I  +  V        +        +       ++R+V 
Sbjct: 132 I--DKAMNETGILEAEKAVNQSILDSRKVQGLFPTYTELKKLPLRKMPPQT-TGQIRIVQ 188

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E  D        C GTH  ST E+ L+ I      + G  RIE + G RA      + E
Sbjct: 189 IEGIDA-----TPCCGTHPHSTLEVQLMKITKWEKYKGGT-RIEFLCGSRAIRDYAFKHE 242

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVN 795
            +K  A FL  ++  ++ R  ++ EE R+        + Q+   ++     S   + D  
Sbjct: 243 TIKKTAQFLSCNENTLLERTNQLLEELRQSNADRRSLQAQVTDYEVKDIFTSAESVGDNK 302

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            +  I +  + K++ S+   L       +I+L GI  E KA +L + +E+L    +   L
Sbjct: 303 IIKSIFNNAEMKQINSLASKLVS--FPRVIVLFGIKSEDKAQLLFMRSEELT-TISMKTL 359

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            R +  ++  G GGG    AQ GG N    D AI      +K+
Sbjct: 360 LRDAITLV-DGKGGGSDLSAQGGGKNKGNLDSAIEYAYRQVKQ 401


>gi|262301387|gb|ACY43286.1| ala-tRNA synthetase [Phrynus marginemaculatus]
          Length = 235

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/236 (38%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+QF +++      LPK   
Sbjct: 1   ETGPCGPCSEIHFDRI-GGRDAKDLVNADLPDVLEIWNLVFIQFNRESDGSLKPLPKKHX 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ +V+Q K++NYD DLF  +  A ++ TG +               + +RV+
Sbjct: 60  DTGMGLERIVSVIQNKSSNYDTDLFVPIFDAIQKATGTRPYSGKVGKEDEDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L     +   L+P +   +G
Sbjct: 120 ADHARTLTVALSDGGRPDNTGRGYVLRRILRRAIRYATEKLNGKPGMFATLVPIVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    + + +  E+ +F KTL RG  LL+  ++ +G   +L GDVA++L
Sbjct: 180 DIFPELKKDPQTVIDIITDEENQFLKTLTRGRKLLERTINKMGDLTVLPGDVAWRL 235


>gi|262301341|gb|ACY43263.1| ala-tRNA synthetase [Daphnia magna]
          Length = 235

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           + GPCGPCSEI FD+           + +    +EIWNLVFM F +++      LP+  I
Sbjct: 1   DVGPCGPCSEIHFDRI-GGRDAAHLVNMDDPDVLEIWNLVFMTFNRESDGSLKPLPRKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVI 275
           D GMG ER+ +V+Q K +NYD D+F+ + +A ++ T           +      + +RV+
Sbjct: 60  DCGMGFERLVSVIQNKRSNYDTDIFQPIFEAIQKGTNAPAYQGKVGSEDVNGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRR++RR + YA   L         L+P +C  +G
Sbjct: 120 ADHARTLTIALSDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAKPGFFASLVPTVCQVLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +   L+ + +  E+ +F KTL RG  LL+  +S L     L GDVA++L
Sbjct: 180 LTFPEVNRDPQLVIDIINDEETQFLKTLTRGRDLLERTISKLNGQTTLPGDVAWRL 235


>gi|262301375|gb|ACY43280.1| ala-tRNA synthetase [Milnesium tardigradum]
          Length = 235

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 138/238 (57%), Gaps = 15/238 (6%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPG--SSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           ETGPCGPCSEI FD+   J G       +++    +EIWNLVF+QF ++       LPK 
Sbjct: 1   ETGPCGPCSEIHFDR---JGGRDASALVNQDDPDVLEIWNLVFIQFNREPDSSLVPLPKK 57

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHR 273
            IDTGMGLER+ +V+Q K +NYD DLF  + +A E+           G +      + +R
Sbjct: 58  HIDTGMGLERLVSVIQNKRSNYDTDLFMPIFKAIEKGTGSRAYXGKVGXEDTDKMDMAYR 117

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332
           V+ DH+R+    ++DG  P N GRGYVLRRI+RRA+ YA   L      +  L+P +   
Sbjct: 118 VVADHIRTLVXALSDGGRPDNVGRGYVLRRILRRAIRYASEKLNAKPGFLGSLVPTVVEM 177

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           +G A+PE+ +    +   +  E+ +F +TL RG  LL+  ++  G  ++L+G+VA++L
Sbjct: 178 LGDAFPEVRKDPTTVTRIIDEEETQFLRTLVRGRRLLERTINQSGXSKVLSGEVAWRL 235


>gi|262301353|gb|ACY43269.1| ala-tRNA synthetase [Hadrurus arizonensis]
          Length = 235

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF ++N      LPK  +
Sbjct: 1   ETGPCGPCSEIHYDRI-GGRDAKHLVNADVPDVLEIWNLVFIQFNRENDGSLKPLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVI 275
           DTGMGLER+ +V+Q+K++NYD DLF  +  A ++ T           +      + +RV+
Sbjct: 60  DTGMGLERLVSVIQDKSSNYDTDLFVPIFDAIQKATNAIPYQGKVGTEDTNGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ +A   L         L+P +   +G
Sbjct: 120 ADHARTLTIALADGGRPDNTGRGYVLRRILRRAIRFATEKLNAKPGAFASLVPVVIDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    I + +  E+ +F KTL RG  LL+  +  LG +++L G++A++L
Sbjct: 180 DVFPELKRDPQAIIDIILDEETQFLKTLSRGQRLLERTIFKLGNEKVLPGEIAWRL 235


>gi|157813830|gb|ABV81660.1| putative AATS-ALA protein [Podura aquatica]
          Length = 237

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 92/237 (38%), Positives = 138/237 (58%), Gaps = 11/237 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +E+WNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRIGGGRNAASLVNMDDPDVLEVWNLVFIQFNRESDGSLKSLPKKHI 60

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVI 275
           D GMGLER+ +V+Q K +NYD DLF  + +A E+ T         G++      + +RV+
Sbjct: 61  DCGMGLERIVSVIQNKRSNYDTDLFVPIFKALEKATGSRAYSGKVGVEDSDGVDMAYRVV 120

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   LG    L   L+  +   +G
Sbjct: 121 ADHVRTLTIALSDGGRPDNTGRGYVLRRILRRGIRYAIEKLGGKPGLFAQLVDTVIESLG 180

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKL 390
           S +PEL +    +++ +  E+ +F KTL RG  LL+  +S L    ++L GD+A++L
Sbjct: 181 STFPELSKDPQSVKDVINEEESQFLKTLSRGRSLLERTVSKLEXGCKVLPGDIAWRL 237


>gi|317497359|ref|ZP_07955682.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895428|gb|EFV17587.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 102

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 65/95 (68%), Gaps = 4/95 (4%)

Query: 4  VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
          V+ +R  +LEFF+  GH  L S SL+P ND +L+  N+GM P K  FTGQE P    VTT
Sbjct: 6  VNELRKMYLEFFESKGHLALKSFSLVPKNDNSLLLINAGMAPLKPYFTGQEVPPRTRVTT 65

Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSF 98
           QKC+R G    D++NVG+T RH TFFEMLGNFSF
Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSF 96


>gi|262301337|gb|ACY43261.1| ala-tRNA synthetase [Cryptocellus centralis]
          Length = 235

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 93/236 (39%), Positives = 138/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+      G    + +    +EIWNLVF+Q+ ++N      LPK  +
Sbjct: 1   ETGPCGPCSEIHYDRIGNRDAGG-LVNADVPEVVEIWNLVFIQYNRENDGSLRSLPKXHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTG+GLER+ +V+Q K +NYD DLF  L +A ++VTG++               + +RV+
Sbjct: 60  DTGLGLERLVSVIQNKLSNYDTDLFTPLFEAIQKVTGIRPYQGQLGVDDSGGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L         L+P +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNTGRGYVLRRILRRAIRYGTEKLDMKPGQFSTLVPVVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +  L + + ++ E+ +F KTL RG  LL+  +  LG  +IL G VA++L
Sbjct: 180 DVFPELKKDPLAVIDIIQEEEXQFLKTLARGRRLLERTVGRLGDRKILPGQVAWQL 235


>gi|262301389|gb|ACY43287.1| ala-tRNA synthetase [Pedetontus saltator]
          Length = 235

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSE+ FD+           +++    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   DTGPCGPCSELHFDRI-GGRNAASLVNQDDPNVLEIWNLVFIQFNRESDGSLKNLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+QEKT+NYD D+F  + +A E+ TG                 + +RV+
Sbjct: 60  DCGLGLERLISVIQEKTSNYDTDVFGPIFKAIEKGTGAPPYRGRVGAEDTDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA  YA   L         L+  +   +G
Sbjct: 120 ADHARTITIALSDGGHPDNTGRGYVLRRILRRAXRYATEKLNAKPGFFATLVTTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + + +  E+++F KTL RG  LL+  ++ LG  + + GDVA+++
Sbjct: 180 DTFPEVRKDPQYVMDVINDEEDQFLKTLSRGRNLLNRTIAKLGGSQTVPGDVAWRM 235


>gi|207108302|ref|ZP_03242464.1| alanyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 334

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 101/315 (32%), Positives = 156/315 (49%), Gaps = 22/315 (6%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R +++ +HSATHLL  AL  +LGSHVSQ GS +    LRFD +H K +   EL+ +ED V
Sbjct: 34  RLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLV 93

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I ++L      M    A   GA AL   KY + VRVVS +       S  LCGG HV
Sbjct: 94  NAQIFKHLTSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKE-----ASIELCGGIHV 148

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +TG I    IV ES + +G+RRIEA+ G+        ++++LK+  + LK +  +V+  
Sbjct: 149 ENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAG 206

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           + ++ E  +  Q             DL   KI  VN +  ++ + D   +K ++D L+ K
Sbjct: 207 INKLKESVKNSQK-------APVSMDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSK 256

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +  + M+    + ++ ++   V         A   A   A++LGG G GGR   A +GG
Sbjct: 257 HERLLAMVF-KKENERITLACGVKNAP---IKANVWANEVAQILGGKG-GGRGDFASAGG 311

Query: 880 PNGNKADQAIAGVAS 894
            +      A+    +
Sbjct: 312 KDIENLQAALNLAKN 326


>gi|299561758|gb|ADJ36951.1| alanyl-tRNA synthetase [Conicera dauci]
          Length = 122

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/124 (42%), Positives = 69/124 (55%), Gaps = 10/124 (8%)

Query: 89  FFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLW 140
           FFEMLGN+SFG YFK+  I  AW+ LT   +L + RLY+T +        + D E  + W
Sbjct: 1   FFEMLGNWSFGDYFKKEIISWAWEFLTDRLELPKDRLYVTYFGGHPESGLEPDLECRQFW 60

Query: 141 KKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEI 200
               GL  + II  +  DNFW M ETGPCGPCSE+ FD+           + +    +EI
Sbjct: 61  ID-MGLKEEHIIPGSMKDNFWEMGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEI 118

Query: 201 WNLV 204
           WNLV
Sbjct: 119 WNLV 122


>gi|262301315|gb|ACY43250.1| ala-tRNA synthetase [Acanthocyclops vernalis]
          Length = 237

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 86/238 (36%), Positives = 132/238 (55%), Gaps = 13/238 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+QF ++       LP   I
Sbjct: 1   ETGPCGPCSEIHFDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNREQDSTLRSLPAKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRV 274
           D GMG ER+ +V+Q K +NYD D+F  + QA E+ +G+                 + +RV
Sbjct: 60  DCGMGFERLVSVIQNKRSNYDTDIFVPIFQAIEKESGVGVPYKGRVGDDDTDKIDMAYRV 119

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEM 333
           + DH+R+ +  ++DG  P N GRGYVLRRI+RR + Y +  L         L+  +   +
Sbjct: 120 VADHIRTLTVALSDGGRPDNVGRGYVLRRILRRGIRYSSEKLNAKPGFFAALVDTVVQLL 179

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKL 390
           G  +PE+ +    I+  +  E+ +F KTL+RG  LLD  ++ L +  ++L GD+A++L
Sbjct: 180 GEFFPEVGKDPESIKNIINEEETQFLKTLNRGHKLLDRTIAKLPQGTKVLPGDIAWRL 237


>gi|157813826|gb|ABV81658.1| putative AATS-ALA protein [Mastigoproctus giganteus]
          Length = 235

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 94/236 (39%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+QF ++N      LPK  +
Sbjct: 1   ETGPCGPCSEIHFDRIGGRDAQS-LVNADVADVLEIWNLVFIQFNRENDGSLIPLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVI 275
           DTGMGLER+ +V+Q KT+NYD DLF  +  A ++ T         G +      + +RV+
Sbjct: 60  DTGMGLERIVSVIQCKTSNYDTDLFVPIFDAIQKATGARPYAGRLGSEDTDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L     +   L+P     +G
Sbjct: 120 ADHVRTLTVALSDGGRPDNTGRGYVLRRILRRAIRYATEKLRARRGMFADLVPVAVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    + + +  E+ +F KTL RG  LL+  +  L   +IL GDVA++L
Sbjct: 180 DVFPELRKDPQNVMDIINDEEIQFLKTLSRGRYLLERTIGKLDDQKILPGDVAWRL 235


>gi|262301379|gb|ACY43282.1| ala-tRNA synthetase [Orchesella imitari]
          Length = 236

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 89/237 (37%), Positives = 136/237 (57%), Gaps = 12/237 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           +++    +E+WNLVF+QF +++      LPK  I
Sbjct: 1   DTGPCGPCSEIHFDRI-GGRNAADLVNQDDPDVLEVWNLVFIQFNRESDGTLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVI 275
           D GMGLER+ +V+Q+K +NYD DLF  +  A ++ T         G +      + +RV+
Sbjct: 60  DCGMGLERIVSVIQQKRSNYDTDLFVPIFDAIQKATGARTYTGKVGXEDSDGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   LG       +L+  +   +G
Sbjct: 120 ADHVRTLTIALSDGGRPDNTGRGYVLRRILRRGIRYAIEKLGGKPGTFANLVDVVVQILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKL 390
             +PE  +    I + +  E+ +F KTL+RG  LL+  +S L   ++ L GDVA++L
Sbjct: 180 DTFPEXQKDPHSIMDVINEEEAQFLKTLNRGRSLLERTVSKLSPTEKTLPGDVAWRL 236


>gi|262301405|gb|ACY43295.1| ala-tRNA synthetase [Streptocephalus seali]
          Length = 235

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/236 (35%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           +++    +EIWNLVFM F +++      LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRI-GGRDAAHLVNQDDPDVLEIWNLVFMTFNRESDSSLKHLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVI 275
           D G+GLER+ +V+Q K +NYD DLF  + +A ++           G + +    + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRSNYDTDLFMPIFEAIQKGTGAPAYSGKVGAEDKEGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + +A   L         L+  +   +G
Sbjct: 120 ADHIRTLTXSLSDGGRPDNVGRGYVLRRILRRGIRFATEKLKAKPGFFGSLVHEVIKILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             + E+ +    +   +  E+ +F KTL RG  LL+  ++ L  +++L GD+A++L
Sbjct: 180 DTFAEIKKDPDSVISIINEEEAQFLKTLSRGRNLLERTIAKLDGNKVLPGDIAWRL 235


>gi|47504|emb|CAA41766.1| alaS [Sulfolobus solfataricus]
          Length = 182

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 11/125 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH ++P   ++      L  T + +V F+   T G  KP    +
Sbjct: 62  TVRESREKFLRFFEKRGHTIVPPKPVVAKWRDDLYLTIASIVDFQPFVTSGLAKPPANPL 121

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R      D+DNVG T  RH T FEM  + +F       Y+K+  +  A +  T
Sbjct: 122 VVSQPCIRLE----DVDNVGITFGRHLTTFEMAAHHAFNYPDKQIYWKDETVAFAKEFFT 177

Query: 116 KEFDL 120
           +E  +
Sbjct: 178 EELGI 182


>gi|158321701|ref|YP_001514208.1| threonyl/alanyl tRNA synthetase SAD [Alkaliphilus oremlandii
           OhILAs]
 gi|158141900|gb|ABW20212.1| Threonyl/alanyl tRNA synthetase SAD [Alkaliphilus oremlandii
           OhILAs]
          Length = 401

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 93/403 (23%), Positives = 154/403 (38%), Gaps = 27/403 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            I+E      +  +  D+T FY E GGQ  D G      I                    
Sbjct: 17  NIIEVIEEDHQFHIRLDRTYFYPEGGGQPSDVGYIESSPIIYVYEKED--------LIYH 68

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V          +   ID+Q R      H   H+L  +   +     +  G  ++ +    
Sbjct: 69  VTERKPSKFKKVQCEIDWQVRFDYMQQHLGQHILSASF--VELFDATTIGFHLSKEYSTI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+   K I S   K +ED  N+ IA NL V T     ++         +  K    +R+V
Sbjct: 127 DI--DKVIDSDGFKKVEDLANETIANNLTVETLFPTEQELRKLPLRKQVSEKVQGPIRLV 184

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +   D        C GTH  ST E+ L+ I+     + G+ RIE + G+RA      + 
Sbjct: 185 KIGDFD-----LVACCGTHPKSTLEVQLIKIIKVEKYKVGM-RIEFLCGKRAIGDYSKKQ 238

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADV 794
           E LK +A  L V++ +V  RV  +  +   L       + ++    +         I  +
Sbjct: 239 ESLKEVARLLGVNEQDVPARVHHMSSDINDLHSSVRALRSEVICHTVEKMLRDAETIDGI 298

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +  +   +D K + ++   L       +I L GI  + KA +L   +++L    +   
Sbjct: 299 KVIKEVYQNIDLKYVNNIATQLTA--YPNVIALFGIEADDKAHLLFAQSKEL-KLLSMNV 355

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L + +  ++  G GGG    AQ GG N N  D +IA   S ++
Sbjct: 356 LLKDAITLI-DGKGGGSDFSAQGGGKNNNNLDSSIAYAYSKVR 397


>gi|321442109|gb|ADW85469.1| ala-tRNA synthetase [Urodus decens]
          Length = 235

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L +A +  TG+                + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDLFMPLFKAIQXGTGVRXYSGKVGADDSDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAIRYASEKLNAKPGFFGTLVWTVVAILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +++ GDVA++L
Sbjct: 180 DVFPEIKKDPDSIIQIINEEEIQFLKTLTRGRNLLNRTMEKLSNSKVVPGDVAWRL 235


>gi|321442095|gb|ADW85462.1| ala-tRNA synthetase [Podosesia syringae]
          Length = 235

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GGREAAHLVNMDDPDVLEIWNLVFIQFNREADGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E+ TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFTPLFEAIEKGTGARPYSGKVGEEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y +  L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAIRYSSEKLNGKPGFFSSLVQTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I E +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEITKDPQSIIEIINEEELQFLKTLSRGRNLLNRTIEKLNGSKTIPGDVAWRL 235


>gi|262301359|gb|ACY43272.1| ala-tRNA synthetase [Ischnura verticalis]
          Length = 238

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 128/239 (53%), Gaps = 14/239 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF +++     +LP   I
Sbjct: 1   ETGPCGPCSELHFDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPHKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVI 275
           D G+GLER+ +V+Q K +NYD DLF  +  A ++ T                  + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRSNYDTDLFMPIFDAIQKGTNAAPYTGRVGADDVDGKDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RR + YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALADGGRPDNTGRGYVLRRILRRGIRYATEKLNAKPKFFGTLVHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKL 390
             +PEL +    I + +  E+E+F KTL RG  LL+  +  L       +L GDVA++L
Sbjct: 180 DTFPELSKDVSGIIDIINEEEEQFLKTLSRGRNLLNRTVEKLTGATSGSVLPGDVAWRL 238


>gi|199581824|gb|ACH89583.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581826|gb|ACH89584.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581828|gb|ACH89585.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581830|gb|ACH89586.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581832|gb|ACH89587.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581834|gb|ACH89588.1| alanyl-tRNA synthetase [Alpheus schmitti]
          Length = 190

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 107/190 (56%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKPSNYDTDLFTP 60

Query: 252 LIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++         G        + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYAGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|71051710|gb|AAH98738.1| Aars protein [Rattus norvegicus]
          Length = 369

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 93/361 (25%), Positives = 149/361 (41%), Gaps = 49/361 (13%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  E+ VN +I
Sbjct: 3   MSNHTATHILNFALRSVLG-DADQKGSLVAPDRLRFDFTAKGAMSTEQIKKTEEIVNGMI 61

Query: 644 AQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSS 691
               PV T            G  A+    Y D VRVVS+               G + S 
Sbjct: 62  EAAKPVYTLDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSV 121

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL-- 749
             CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   KSL++    
Sbjct: 122 EFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKKSLSAMEVK 181

Query: 750 ----KVSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCHKIADVN-- 795
                    +V   + ++ E        +++K +     + L+  ++DL     ADV   
Sbjct: 182 VKAQSAPNKDVQKEIADLGEVLATAVIPQWQKDEQRETLKSLKKVMDDLDRASKADVQKR 241

Query: 796 -----------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKAS 837
                             +  + S   +K L   +   +        ML  +  E  K +
Sbjct: 242 VLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVDNEAGKIT 301

Query: 838 VLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A+    SF 
Sbjct: 302 CLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEALQLATSFA 360

Query: 897 K 897
           +
Sbjct: 361 Q 361


>gi|226510067|ref|NP_001142842.1| hypothetical protein LOC100275233 [Zea mays]
 gi|195610446|gb|ACG27053.1| hypothetical protein [Zea mays]
          Length = 233

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 15/231 (6%)

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            VRVV+V        S  LCGGTHVS+T EI    I+SE  I +GIRRIEA+ G     +
Sbjct: 1   MVRVVAVPGI-----SLELCGGTHVSNTAEIRGFKIISEQGIASGIRRIEAVAGDAFVDY 55

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-------LQLIHAKRKLQLNVEDLS 787
           +  +D  ++ L   LKV   +V  RVE I EE R        L+   A  K        +
Sbjct: 56  VCARDNYMRRLCLSLKVKAEDVNSRVETILEELRATRNEASSLRSKIAVLKAASLASRAT 115

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDL 846
             +  +V  +   + +VD+  LKS  + L   ++    ++L     + K S++   +  +
Sbjct: 116 TVEPQNVRIVVENMGDVDADGLKSAAEHLIDTLKDPAAVILGSSPGDGKVSLVAAFSPAI 175

Query: 847 LD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++    A       AK+ GGGG GG+P+ AQ+GG        A+    + +
Sbjct: 176 VEMGLQAGKFVSGIAKLCGGGG-GGKPNFAQAGGRKPENLPDALEKARAEI 225


>gi|262301365|gb|ACY43275.1| ala-tRNA synthetase [Plathemis lydia]
          Length = 238

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 130/239 (54%), Gaps = 14/239 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF +++      LP   I
Sbjct: 1   ETGPCGPCSELHFDRI-GGRDAAHLVNMDDPDVLEIWNLVFIQFNRESNGSLKSLPSKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---------MKYEGNNIVNHRVI 275
           D G+GLER+ +V+Q K +NYD DLF  +  A ++ T           + +    + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRSNYDTDLFMPIFDAIQKGTNAPQYTGKVGAEDKDGKDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALADGGRPDNTGRGYVLRRILRRAIRYATEKLNAKPQFFGSLVHVVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG---KDEILNGDVAFKL 390
             +PEL +    I + +  E+E+F KTL RG  LL+  +  L       +L G+VA++L
Sbjct: 180 DTFPELKKDVSGIIDIINEEEEQFLKTLTRGRNLLNRTVEKLTGGASGTVLPGEVAWRL 238


>gi|199581644|gb|ACH89493.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581648|gb|ACH89495.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581650|gb|ACH89496.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581654|gb|ACH89498.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581656|gb|ACH89499.1| alanyl-tRNA synthetase [Alpheus millsae]
          Length = 190

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 110/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++     ILPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKILPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDSDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581698|gb|ACH89520.1| alanyl-tRNA synthetase [Alpheus xanthocarpus]
 gi|199581700|gb|ACH89521.1| alanyl-tRNA synthetase [Alpheus xanthocarpus]
 gi|199581702|gb|ACH89522.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581704|gb|ACH89523.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581706|gb|ACH89524.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581708|gb|ACH89525.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581710|gb|ACH89526.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581712|gb|ACH89527.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581714|gb|ACH89528.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
          Length = 190

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ +VLQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKNLPKKHIDCGMGLERLVSVLQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581614|gb|ACH89478.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
          Length = 190

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLXGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581836|gb|ACH89589.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581838|gb|ACH89590.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581840|gb|ACH89591.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581842|gb|ACH89592.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581844|gb|ACH89593.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581846|gb|ACH89594.1| alanyl-tRNA synthetase [Alpheus umbo]
          Length = 190

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581670|gb|ACH89506.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581672|gb|ACH89507.1| alanyl-tRNA synthetase [Alpheus estuariensis]
 gi|199581674|gb|ACH89508.1| alanyl-tRNA synthetase [Alpheus estuariensis]
 gi|199581676|gb|ACH89509.1| alanyl-tRNA synthetase [Alpheus estuariensis]
 gi|199581680|gb|ACH89511.1| alanyl-tRNA synthetase [Alpheus estuariensis]
          Length = 190

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKSLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|294499023|ref|YP_003562723.1| Threonyl and Alanyl tRNA synthetase domain-containing protein
           [Bacillus megaterium QM B1551]
 gi|294348960|gb|ADE69289.1| Threonyl and Alanyl tRNA synthetase domain protein [Bacillus
           megaterium QM B1551]
          Length = 391

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/402 (20%), Positives = 152/402 (37%), Gaps = 28/402 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E++E         +   QT FY E GGQ  D G   G  ++    +  +         
Sbjct: 16  ETEVIETRSLSNGYALTLKQTAFYPEGGGQPSDYGNIAGIDVKDVYEENGE--------- 66

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L  + ++   I++  R      HS  HLL   L      H            +
Sbjct: 67  VYHIVNTLPAQTNVTCEINWHRRFDHMQQHSGQHLLSALLIDTYDIHTVSFHLGNEAVSI 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             +V     ++  +L  IE  VND I  N  + T  + +E+     A   +    ++ VR
Sbjct: 127 DLNVPQ---LSHEQLLHIEKVVNDAIHSNRHIKTYEVKKEELHTL-ALRKVPDLEDEVVR 182

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  D      + C GTHV+  GE+ L+ +      + G  R+    G RA +    
Sbjct: 183 IVEIEGID-----VSACCGTHVNQIGELGLIKLTKTE-KQRGNTRLFFKCGMRALADYQQ 236

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNF 796
             E +  L++    S+  VV R++++  E ++LQ    + K +             + +F
Sbjct: 237 SQEIVAELSNKFSTSRELVVERIKKLETEQKELQKQLEELKNENAAYLASELESKKEGSF 296

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           + H       K+++++   L +   +   +L   S ++K  +    +          +L 
Sbjct: 297 LYHHFENRTLKDVQALTKQLLQTPDTT--LLFSFSSDQKVLLAHSGS-----GVKCGELY 349

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +    +  G GGGG P  AQ+   +    +  I+ V   + +
Sbjct: 350 KELLPLYDGKGGGG-PKQAQASFSSSENMNAFISAVKEKITE 390


>gi|199581646|gb|ACH89494.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581652|gb|ACH89497.1| alanyl-tRNA synthetase [Alpheus millsae]
          Length = 190

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKXLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDSDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|167950028|ref|ZP_02537102.1| Phosphoserine aminotransferase, Methanosarcina type [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 91

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/77 (62%), Positives = 56/77 (72%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           MV FK+ F G++K  Y    + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MVQFKDAFLGRDKRSYLRAASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLTKEFD 119
           K  AI  AW+ LT+   
Sbjct: 61  KREAINYAWEFLTRTAG 77


>gi|199581658|gb|ACH89500.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581660|gb|ACH89501.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581662|gb|ACH89502.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581664|gb|ACH89503.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581666|gb|ACH89504.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581668|gb|ACH89505.1| alanyl-tRNA synthetase [Alpheus colombiensis]
          Length = 190

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQRLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581748|gb|ACH89545.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581750|gb|ACH89546.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581752|gb|ACH89547.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581754|gb|ACH89548.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581756|gb|ACH89549.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581758|gb|ACH89550.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581760|gb|ACH89551.1| alanyl-tRNA synthetase [Alpheus nuttingi]
          Length = 190

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDSDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581612|gb|ACH89477.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581616|gb|ACH89479.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581620|gb|ACH89481.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581622|gb|ACH89482.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581624|gb|ACH89483.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581626|gb|ACH89484.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581628|gb|ACH89485.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581632|gb|ACH89487.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581634|gb|ACH89488.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581638|gb|ACH89490.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581640|gb|ACH89491.1| alanyl-tRNA synthetase [Alpheus bouvieri]
          Length = 190

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581630|gb|ACH89486.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581636|gb|ACH89489.1| alanyl-tRNA synthetase [Alpheus bouvieri]
          Length = 190

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +    +  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASXVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581642|gb|ACH89492.1| alanyl-tRNA synthetase [Alpheus bouvieri]
          Length = 190

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/188 (38%), Positives = 109/188 (57%), Gaps = 10/188 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLL 369
           LDRG  LL
Sbjct: 181 LDRGQKLL 188


>gi|199581678|gb|ACH89510.1| alanyl-tRNA synthetase [Alpheus estuariensis]
 gi|199581682|gb|ACH89512.1| alanyl-tRNA synthetase [Alpheus estuariensis]
          Length = 190

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKSLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDXVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581618|gb|ACH89480.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
          Length = 190

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A + ++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQXLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581762|gb|ACH89552.1| alanyl-tRNA synthetase [Alpheus nuttingi]
          Length = 190

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDSDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           L RG  LL  
Sbjct: 181 LGRGQKLLKR 190


>gi|297519240|ref|ZP_06937626.1| alanyl-tRNA synthetase [Escherichia coli OP50]
          Length = 316

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 131/353 (37%), Positives = 196/353 (55%), Gaps = 37/353 (10%)

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G P+D+  D
Sbjct: 1   QAQVEQVLKTEEEQFARTLERGLALLDEELAKLS-GDTLDGETAFRLYDTYGFPVDLTAD 59

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   R +  +D   F  A+EEQR RAR              + ++     A++F GYD L
Sbjct: 60  VCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVDSASEFKGYDHL 112

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                   ++  V A+   G+ V+   +GQ+  VV DQTPFYAE
Sbjct: 113 E-----------------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAE 149

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GD G   G      + D QK  +    H   +  G L+   ++   +D   R ++
Sbjct: 150 SGGQVGDKGELKGANFSFAVEDTQKYGQ-AIGHIGKLAAGSLKVGDAVQADVDEARRARI 208

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I
Sbjct: 209 RLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQI 268

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
            +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGG
Sbjct: 269 RRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGG 316


>gi|199581684|gb|ACH89513.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581686|gb|ACH89514.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581688|gb|ACH89515.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581690|gb|ACH89516.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581692|gb|ACH89517.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581694|gb|ACH89518.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581696|gb|ACH89519.1| alanyl-tRNA synthetase [Alpheus utriensis]
          Length = 190

 Score =  168 bits (425), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    IEIWNLVFMQF +++      LPK  ID GMG ER+ ++LQ K++NYD D+F  
Sbjct: 1   KDDPDVIEIWNLVFMQFNRESDGSLRNLPKKHIDCGMGFERLVSILQNKSSNYDTDIFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ + +++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIILSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYAKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581810|gb|ACH89576.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581812|gb|ACH89577.1| alanyl-tRNA synthetase [Alpheus simus]
          Length = 190

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGXKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILHDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|150019605|ref|YP_001311859.1| threonyl/alanyl tRNA synthetase, SAD [Clostridium beijerinckii
           NCIMB 8052]
 gi|149906070|gb|ABR36903.1| Threonyl/alanyl tRNA synthetase, SAD [Clostridium beijerinckii
           NCIMB 8052]
          Length = 403

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 158/404 (39%), Gaps = 28/404 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           EIV+      K  V+ D+T F+   GGQ  D G      +      +    +   V+H +
Sbjct: 17  EIVDIKEIDNKFHVILDKTAFFPGGGGQSCDIGTLEDQKV------IDVYEKEEIVYHVV 70

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            ++        +  +ID+  R+     H   H+L  +   +  ++       I       
Sbjct: 71  EKK--PLKIHKVKCSIDWDIRQDGMHQHLGQHVLSGSFFNLFNANT----FAIHLGSDIS 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            V     +T  +++  E   N +I   LPV + +  + +         L     + +R+V
Sbjct: 125 TVDIYGVLTEEQVREAERLANKVIGDALPVESFVPTKAELKKLSLRRALPNT-EEDIRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +   D        C G H +ST ++ L+ I      + G  RIE + G+RA S    +D
Sbjct: 184 KIGDFD-----INACCGLHPTSTLDLRLIKIKKFEKHKEGT-RIEFLAGERAISDSFKKD 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADV 794
           E   S+  +L  ++   +  ++ + +  R+    +    + L    +        KI +V
Sbjct: 238 EFQTSICRYLSCNENEAINGIKNLNQNLREANETNKNLNILLAKYQVKEILENAAKINNV 297

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +  I    + K + ++   L +      I L+ +  ++K ++L   ++D +      +
Sbjct: 298 KVIKQIFDGENLKYVNNLTSKLIEN--ENTIALMAVKSDEKVNLLFACSKD-IKDIKMNE 354

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           L + +  ++  G GGG P  AQ  G N +  + A+    + + +
Sbjct: 355 LLKDAISLI-DGKGGGSPFQAQGAGKNNSNLESAMDYAFNKVSQ 397


>gi|199581736|gb|ACH89539.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581738|gb|ACH89540.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581740|gb|ACH89541.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581742|gb|ACH89542.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581744|gb|ACH89543.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581746|gb|ACH89544.1| alanyl-tRNA synthetase [Alpheus malleator]
          Length = 190

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +    I+  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYIKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581796|gb|ACH89569.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581802|gb|ACH89572.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581804|gb|ACH89573.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581806|gb|ACH89574.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581808|gb|ACH89575.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581814|gb|ACH89578.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581816|gb|ACH89579.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581818|gb|ACH89580.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581820|gb|ACH89581.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581822|gb|ACH89582.1| alanyl-tRNA synthetase [Alpheus simus]
          Length = 190

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILHDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|304316619|ref|YP_003851764.1| threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778121|gb|ADL68680.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 394

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 95/402 (23%), Positives = 174/402 (43%), Gaps = 32/402 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            +++ +      E++ D+T FY E+GGQ  DTG   G    +++ +V  K   +      
Sbjct: 17  NVIDASFVNGYYEIILDETYFYPESGGQPADTGTIDG----IKVDNVVLKNNKVIHMLK- 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                +    S+   ID++ R      HS  HLL      +   +       I  D    
Sbjct: 72  ----EIPKNKSVFCEIDWEKRFDNMQQHSGQHLLSAVFYKLY--NAETESFSIGDDCSHI 125

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            +T++  ++ +EL   E+  N II  NLP+ T  ++ E+ I          K N+ +R+V
Sbjct: 126 TLTNNN-LSESELAVAEEEANKIIYSNLPISTYFVDNEELIKLPLRKK--PKVNENIRIV 182

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            ++  D      + CGGTHV S GEI L+ I +    + GI RIE + G RA      ++
Sbjct: 183 EIKDID-----YSPCGGTHVKSLGEIGLIKIRNYEKSKKGI-RIEFLCGLRAIKDYNVKN 236

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADV 794
             +  L S L V +  ++ +V +++ E ++L+    K K  + + +          +   
Sbjct: 237 NCINMLISLLSVKEDEILDKVNKLFLENKELKKELNKMKENILLYEAEKLISESIDLKKY 296

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             ++   ++ D KEL+++   +  K +  + ++  ISK   A+++I  +ED+    N   
Sbjct: 297 KLVTKTFNDRDLKELRTLS-QIVTKEKGIVCIVCSISKN--ANIVISRSEDV--NININS 351

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                  ++  G GGG   M Q  G      D+A+      +
Sbjct: 352 FFNSVLDII-DGNGGGNQKMCQGCGK-VENIDRALEKAIDII 391


>gi|255656151|ref|ZP_05401560.1| putative RNA-binding protein [Clostridium difficile QCD-23m63]
 gi|296450416|ref|ZP_06892172.1| DHHA1 domain protein [Clostridium difficile NAP08]
 gi|296879461|ref|ZP_06903455.1| DHHA1 domain protein [Clostridium difficile NAP07]
 gi|296260677|gb|EFH07516.1| DHHA1 domain protein [Clostridium difficile NAP08]
 gi|296429607|gb|EFH15460.1| DHHA1 domain protein [Clostridium difficile NAP07]
          Length = 399

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/406 (19%), Positives = 167/406 (41%), Gaps = 32/406 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           EIVE      K  V+ D+T F+   GGQ  D G      +     + +K    +      
Sbjct: 17  EIVEIKEVENKFHVLLDKTAFFPGGGGQFADLGKIDNYDVISVYEEGKKVYHVL------ 70

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +  +ID+  R      H   H+L          + +  G  +  +    
Sbjct: 71  --DKKPIKIHRVKCSIDWNRREDGMHQHFGQHVLSGCFFKTF--NANTTGFHLGSEYSTV 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+     +   +++ IE   N+II QN+ V T +  +++         L    ++ +RVV
Sbjct: 127 DI--EGNLDEDKIREIELLSNEIIRQNIQVETLLPTKKELKKIWLRRDLPNT-DEEIRVV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +   D        C G H  +TGE+ ++ I      ++   RIE + G+RA   ++ +D
Sbjct: 184 KIGDLDTN-----ACCGVHPKATGELRMIKIKKWEKHKS-STRIEFLAGKRAVDDILKRD 237

Query: 740 EKLKSLASFLKVSQGN-------VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  +  +L  ++ +       +  +VEE+  + R+L+ + +  +++  +E    +KI 
Sbjct: 238 IYLTKICRYLSCNEEDAINGIVNLNSKVEEVLIKKRRLEEVVSTYQVKEMIE--KANKIG 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
           +++ +  I  + D K +  + + + +   +  I L+ +    K +++   +++L    N 
Sbjct: 296 NISVVKKIYEDEDLKYVNKIANKITEHENN--IALLAVKFNDKINLVFACSKNL-KDINM 352

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             L + +  ++  G GGG   +AQ GG N    +  +      ++K
Sbjct: 353 GVLLKDAISLI-DGKGGGSKILAQGGGKNNGNLEATLDYAFMKIEK 397


>gi|199581798|gb|ACH89570.1| alanyl-tRNA synthetase [Alpheus saxidomus]
          Length = 190

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDXVVEILHDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|295704343|ref|YP_003597418.1| Threonyl and Alanyl tRNA synthetase domain-containing protein
           [Bacillus megaterium DSM 319]
 gi|294802002|gb|ADF39068.1| Threonyl and Alanyl tRNA synthetase domain protein [Bacillus
           megaterium DSM 319]
          Length = 391

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 153/400 (38%), Gaps = 28/400 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E++E         +    T FY E GGQ  D G   G  ++    +  +         
Sbjct: 16  ETEVIETRSLSNGYALTLKHTAFYPEGGGQPSDYGNIAGIDVKDVYEENGE--------- 66

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L  + ++   ID+  R      HS  HLL   L      H       +  + +
Sbjct: 67  VYHIVDTLPEQTNVTCEIDWHRRFDHMQQHSGQHLLSALLIDTYDIHTVS--FHLGSEAV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+   + ++  +L  IE  VND I  N  + T     ++ + + A   +    ++ VR
Sbjct: 125 SIDLNVPQ-LSHEQLLHIEKVVNDAIYSNRHIKTYE-VTKEDLHTLALRKVPDLEDEVVR 182

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  D      + C GTHV+  GE+ L+ +      + G  R+    G RA +    
Sbjct: 183 IVEIEGID-----VSACCGTHVNQIGELGLIKLTKTE-KQRGNTRLFFKCGMRALADYQQ 236

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNF 796
             E +  L++    S+  VV R++++  E ++LQ    + K +             + +F
Sbjct: 237 SQEIVAELSNKFSTSRELVVERIKKLETEQKELQKQLEELKNENAAYLASELEAKKEGSF 296

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           + H       K+ +++   L +    G  +L   S ++K  +    +E         +L 
Sbjct: 297 LCHHFENRTLKDGQALTKQLLQT--PGTTLLFAFSSDQKVLLAHSGSE-----VKCGELY 349

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +    +  G GGGG P  AQ+   +    +  ++ V   +
Sbjct: 350 KELLPLYDGKGGGG-PKQAQASFSSSENMNAFLSAVKEKI 388


>gi|199581716|gb|ACH89529.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581722|gb|ACH89532.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581724|gb|ACH89533.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581726|gb|ACH89534.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581728|gb|ACH89535.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581730|gb|ACH89536.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581732|gb|ACH89537.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581734|gb|ACH89538.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
          Length = 190

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +    I+  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILEDAFPEVAKDPEYIKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581800|gb|ACH89571.1| alanyl-tRNA synthetase [Alpheus saxidomus]
          Length = 190

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDDVVEILHDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581718|gb|ACH89530.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581720|gb|ACH89531.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
          Length = 190

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +    I+  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILZDAFPEVAKDPEYIKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|226328742|ref|ZP_03804260.1| hypothetical protein PROPEN_02642 [Proteus penneri ATCC 35198]
 gi|225201928|gb|EEG84282.1| hypothetical protein PROPEN_02642 [Proteus penneri ATCC 35198]
          Length = 228

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/219 (38%), Positives = 125/219 (57%), Gaps = 10/219 (4%)

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           + GS +    LRFD +H + +   +L+ IED VN  I  N PVVT +M+ EDA   GA A
Sbjct: 4   KKGSLVNDKYLRFDFSHFEAVKPEQLREIEDIVNAQIRLNSPVVTELMDLEDAKEKGAMA 63

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           L G KY++RVRV+++     G  S+ LCGGTH S TG+I L  IVSES   AGIRRIEAI
Sbjct: 64  LFGEKYDERVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIVSESGTAAGIRRIEAI 118

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           TG  A   +  Q + +  +A  LK    N+V R++ + E+YR L+    + K Q   ++ 
Sbjct: 119 TGIAAIESIHEQSDLISLVAQVLKSDGTNLVERIKTVQEKYRLLEKELQQLKDQQAAQES 178

Query: 787 S-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           S        +  +  +   ++ V+ K L++++D L+K I
Sbjct: 179 SSLGSQAKNVKGIKLLVRELNGVEPKMLRTMVDDLKKSI 217


>gi|199581794|gb|ACH89568.1| alanyl-tRNA synthetase [Alpheus saxidomus]
          Length = 190

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVXILHDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|182418186|ref|ZP_02949486.1| dhha1 domain protein [Clostridium butyricum 5521]
 gi|237666298|ref|ZP_04526285.1| threonyl/alanyl tRNA synthetase, SAD [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378004|gb|EDT75544.1| dhha1 domain protein [Clostridium butyricum 5521]
 gi|237658388|gb|EEP55941.1| threonyl/alanyl tRNA synthetase, SAD [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 401

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 147/404 (36%), Gaps = 27/404 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           EIV       K  V  D+T F+   GGQ  DTG  IGD   + + +       I      
Sbjct: 17  EIVNIEEHLGKFRVTLDKTAFFPGGGGQSCDTG-MIGDHKVIDVYEENDIVYHIV----- 70

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     ++   ID + R      H   H+L      +  ++       I       
Sbjct: 71  --EKKPIKIHNVKCKIDSERRTDGMCQHLGQHVLSGCFFNLFNANT----FAIHLGADIS 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            V     +T  ++++ E   N +I   L V + I  + +         L     + +R+V
Sbjct: 125 TVDIYGVLTEEQIRAAERLANKVIGDALKVESFIPTKSELKKLTLRRALPNT-KEDIRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +            C G H  ST ++ L+ I      + G  RIE ++G RA      +D
Sbjct: 184 KIGD----DFDINACCGLHPKSTLDLRLIKIKKFEKHKEGT-RIEFLSGNRAIEDSYKKD 238

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADV 794
           E   S+  +L  ++   V  ++ +    ++   I+    + L    +         + + 
Sbjct: 239 EFQNSICKYLNCNENEAVNGIKNLNNNLKEANEINKSLNITLANYQVKELIDNAETVGEF 298

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +  I    + K + ++   L +      + L+ +  E K +++   T+  +      +
Sbjct: 299 KIIKSIFDNENLKYINNLTSKLVET--PNTVTLMAVKSEDKVNLIFACTKG-IKEIKVNE 355

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           + + +  ++  G GGG P MAQ  G N    D A+    + +K+
Sbjct: 356 VLKDAISLI-DGKGGGSPFMAQGAGKNNANLDGALDYAFNKIKE 398


>gi|297724655|ref|NP_001174691.1| Os06g0245800 [Oryza sativa Japonica Group]
 gi|52076744|dbj|BAD45655.1| alanyl-tRNA synthetase-like [Oryza sativa Japonica Group]
 gi|255676887|dbj|BAH93419.1| Os06g0245800 [Oryza sativa Japonica Group]
          Length = 326

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/301 (30%), Positives = 155/301 (51%), Gaps = 21/301 (6%)

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E           +  R+IE +NLVFMQ+ +++      L + +IDTGMGLERMA +LQ+
Sbjct: 26  REDPQMRCMQDLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQK 85

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEG 296
             NNY+ DL   +I+ +  +  + Y   +     N ++I DH+R+  +LI+DG++P+N G
Sbjct: 86  VPNNYETDLIFPIIEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIG 145

Query: 297 RGYVLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIE 348
           RGYV+RR++RR +   RL+G             +  L     +      P++   +  I 
Sbjct: 146 RGYVVRRLIRRVVRTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEIDPDVESRRKSIL 205

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIM 401
             L+ E+ RF +TL+RG  LLD +L        + G    L+G   F LYDT+G P++I 
Sbjct: 206 GELQREELRFVQTLERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEIT 265

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
            +I   RG+  +D+  F+  +E QR +++A    +      +    + +    T+F+G D
Sbjct: 266 AEISGERGVI-VDMKGFDMEMENQRKQSQAAHNVVKLSVGNET--EIVKSIPDTEFLGSD 322

Query: 462 L 462
            
Sbjct: 323 T 323


>gi|199581766|gb|ACH89554.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581768|gb|ACH89555.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581770|gb|ACH89556.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581774|gb|ACH89558.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581776|gb|ACH89559.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581778|gb|ACH89560.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581780|gb|ACH89561.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581782|gb|ACH89562.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581784|gb|ACH89563.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581786|gb|ACH89564.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581790|gb|ACH89566.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581792|gb|ACH89567.1| alanyl-tRNA synthetase [Alpheus panamensis]
          Length = 190

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RR + YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRGVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581772|gb|ACH89557.1| alanyl-tRNA synthetase [Alpheus formosus]
          Length = 190

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 108/188 (57%), Gaps = 10/188 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RR + YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRGVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLL 369
           LDRG  LL
Sbjct: 181 LDRGQKLL 188


>gi|41615330|ref|NP_963828.1| hypothetical protein NEQ547 [Nanoarchaeum equitans Kin4-M]
 gi|40069054|gb|AAR39389.1| NEQ547 [Nanoarchaeum equitans Kin4-M]
          Length = 381

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/344 (20%), Positives = 125/344 (36%), Gaps = 89/344 (25%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAVTTVQKCVRAG 71
           +FF + G+  L S  ++      L F  + +V F+  I  G+ +P+   +   Q C+R  
Sbjct: 76  KFFSERGYVPLNSYPVVARWRDDLDFVIASIVDFQPHIVNGEIEPIANRIIIPQYCLR-- 133

Query: 72  GKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYD 131
              +DL  VG + RH T F M+G  +F    K               + +  +     Y 
Sbjct: 134 --FDDLPLVGYSGRHFTSFIMIGQHAF---EKPE-------------NYNPYK-----YL 170

Query: 132 EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS 191
            D   +       G   ++++    +++ W+    G  GP  EIF+              
Sbjct: 171 RDLLDY---FNYLGFKDNQLV---IHEDAWAGG--GNAGPSLEIFY-------------- 208

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI----- 246
                 +E+ N V+M ++  + +   +     +D G G ER+   L    N Y++     
Sbjct: 209 ----TGLELANQVYMVYKVIDNKLIPMENIRVLDMGAGHERIVWALNGSINAYEVTFPNS 264

Query: 247 --------DLFKHL--IQASEQVTGMKYEGNN----------------------IVNHRV 274
                   DL + +  I         K +  N                           +
Sbjct: 265 LKYLRNYFDLDREIKDIYYLGYKIESKDDIINVAKEYAENFGFDLDYVLKAWEEYAKMYI 324

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
           + DHLRS    I DG+LP+N G GY +R ++RR        G+ 
Sbjct: 325 VADHLRSVYLAIKDGMLPSNTGGGYNIRILLRRVFKIMEEKGFE 368


>gi|199581764|gb|ACH89553.1| alanyl-tRNA synthetase [Alpheus formosus]
          Length = 190

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 10/189 (5%)

Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
           +    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +
Sbjct: 2   DDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPI 61

Query: 253 IQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
             A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLRR
Sbjct: 62  FDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRR 121

Query: 304 IMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           I+RR + YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KTL
Sbjct: 122 ILRRGVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKTL 181

Query: 363 DRGLVLLDG 371
           DRG  LL  
Sbjct: 182 DRGQKLLKR 190


>gi|199581788|gb|ACH89565.1| alanyl-tRNA synthetase [Alpheus panamensis]
          Length = 186

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/186 (36%), Positives = 106/186 (56%), Gaps = 10/186 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RR + YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRGVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLV 367
           LDRG  
Sbjct: 181 LDRGQK 186


>gi|1814431|gb|AAB99528.1| alanyl-tRNA synthetase [Sulfolobus solfataricus]
          Length = 174

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 11/118 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            V   R  FL FF+K GH  +P   ++      L  T + +V F+  + +G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRIPPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A + 
Sbjct: 121 VVSQPSIRLE----DIDNVGVTFGRHLTTFEMAAHHAFNYPDRYVYWKDETTAYATEF 174


>gi|288556728|ref|YP_003428663.1| hypothetical protein BpOF4_18650 [Bacillus pseudofirmus OF4]
 gi|288547888|gb|ADC51771.1| hypothetical protein BpOF4_18650 [Bacillus pseudofirmus OF4]
          Length = 398

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 153/403 (37%), Gaps = 26/403 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + +++++    +   +V DQT FY   GGQ  D G      I L      +    +    
Sbjct: 16  EAKVIKKDTDERGTYLVLDQTVFYPTGGGQPCDRGQLDDVEITLVEEVEGEIRHYV---- 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              +  +L T  ++   ID+  R      H+  H+L  A + + G      G  +  + +
Sbjct: 72  ---QSPLLETGQTVHGQIDWSRRFDHMQQHAGQHILSAAFAELFGYQT--VGFHLGTEEV 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+   + +T  E + +    N+II +N  +  R ++ E+A        L       +R
Sbjct: 127 TIDLEIPQ-LTIDEAEKVVHYANEIIQENRVIEARWVSEEEANRYPLRKAL--SVKGDIR 183

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +   D        CGGTH   T E+  L I      R  I RI  + G R       
Sbjct: 184 LVIIPDFDYN-----GCGGTHPKQTLEVQGLSITGWEKQRNNI-RISFLCGNRVFKQFAR 237

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792
            ++ L+ L+  L      +  +   +  + ++      + K +L   +      SC  ++
Sbjct: 238 HNQILQKLSQTLNAQYIKLPEKATSLIVKQKEADKELEQIKSELLKYEAAELLNSCEVVS 297

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
           + + +         KEL+ +   + ++    ++  V  + E K  +++ V +  ++   A
Sbjct: 298 NQSRLFKRFKNRSIKELQQLAKDVVEENDQAVVFFVSETAE-KTQLVMAVGK-AVNSVQA 355

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             + +     L  G GGG  H AQ GG  G   +     V   
Sbjct: 356 NMMMKKVLPYL-DGRGGGNQHFAQGGGNKGADVESLFELVREL 397


>gi|241709470|ref|XP_002403410.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215505070|gb|EEC14564.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 104

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 58/78 (74%)

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+R GGKHNDL++VG+   HHTFFEMLGN+SFG YFK+ A  +AW+LLT+ +
Sbjct: 11  KRAANYQKCIRVGGKHNDLEDVGKDLNHHTFFEMLGNWSFGDYFKKEACAMAWELLTEVY 70

Query: 119 DLDQRRLYITVYDEDEEA 136
            L + RLY+T +  D+EA
Sbjct: 71  RLPKERLYVTYFAGDKEA 88


>gi|57641542|ref|YP_184020.1| alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           kodakarensis KOD1]
 gi|57159866|dbj|BAD85796.1| alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           kodakarensis KOD1]
          Length = 406

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 100/404 (24%), Positives = 164/404 (40%), Gaps = 33/404 (8%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           EAV   K+ V+ D+T FY E GGQ  D G   GDG R+ +  V  K E    H   +E  
Sbjct: 23  EAVEDGKIRVLLDRTIFYPEGGGQPSDRGIIEGDGFRVLVEKVSGKEE--IWHEGKLEGR 80

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +      + L +D++ R +   NH+  H+L   +           G  I  +  + ++ +
Sbjct: 81  LPEAREEVRLVLDWEWRYENMKNHTGQHVLSAIIK--GLYGAETTGFQIFENYNKIEIDY 138

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              +T   ++ IE   N++I  +LPV                    +K +DR+R++ +  
Sbjct: 139 PGELTWEMIQEIERKTNEVIWGDLPVEVEEYQYLPEDVVKILRKHVSKVHDRIRIIKIGT 198

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            D        CGGTHV ST EI  L I+        + RIE + G RA   L G      
Sbjct: 199 VDA-----TPCGGTHVKSTREIGFLKILRFYRKSRKLWRIEFVAGNRALRTLNGILSDYW 253

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMS 798
           +    +      +V R++E+ E   KL+    + K +L             KI D+  ++
Sbjct: 254 NALDEMPNKNPPLVERIQELKETMDKLEAEKDELKEELWEWKGKYLLEKSEKIGDIRVVT 313

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
            +I     KE++       +K    ++++VG +      VL    ED+    +  +L   
Sbjct: 314 -LIEGKPMKEVQGFAVKFVEKNPRTVLLVVGEN-----YVLFARNEDV--NVSMRELFER 365

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQ----AIAGVASFLKK 898
            A  L GG GGG  ++A+       K D      +      LK+
Sbjct: 366 VASQL-GGKGGGTDNLARG------KVDAEPRVILQTARDVLKE 402


>gi|27982009|gb|AAM94643.1| alanyl tRNA synthetase [Spironucleus barkhanus]
          Length = 623

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 124/618 (20%), Positives = 230/618 (37%), Gaps = 73/618 (11%)

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL 329
            +  +++DHLRS    I DG LP+N G G  LR + RR +   +        +   L  +
Sbjct: 31  RDIYIVLDHLRSLLVAIQDGALPSNVGGGCNLRNVFRRVLSILQKNN----WIHIGLDGI 86

Query: 330 CTEMGSAYPELIQ--------AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              M S   +L +            +++ L  E  R+  T          +   L K+ I
Sbjct: 87  YEIMESHRIDLQKIQGPDSFPEFKPMKQVLDIEILRWKTTDADAKSK---LQKLLKKNPI 143

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L  D       T G+  D +  I                 + EQ+   +  +        
Sbjct: 144 LKLDDWVVASTTFGIDPDTIAQISA-----QPIPNDLYSKISEQQELNQVKTH------- 191

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
           +K  +   +    T+ + Y    G +   ++                 + +  I++  E 
Sbjct: 192 QKQLYDTHDLL-PTEQVYYTEENGEEKFIQN----------------DAKLVKIIEDVE- 233

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
                   K   VFD+T FY  +GGQ  D G  + D          KK   +  H+A   
Sbjct: 234 ----NKNSKTIFVFDKTIFYPISGGQANDIGIIVTDQNETIEIIDVKKVGPVVFHYAKNT 289

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
             I        + ID +NR QL  +H+  H++  A   ILG H+ Q G+  T      D+
Sbjct: 290 PKIPFISCI--MKIDEENRYQLMCHHTGAHVISAACRQILGPHIWQAGAKKTAKEATLDI 347

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVV 679
           TH + +   E   IE   N ++  +LP+    + + +A       L          VR V
Sbjct: 348 THFRSLDPEEELEIEKLSNRLVRNSLPITKENLLKNEAENRYGFTLYQGGVVPGSSVRCV 407

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            ++  D        C GTH+S+T  I L+ ++    +  G+ R+  + G+ A ++   Q 
Sbjct: 408 CIQNTD-----FEACCGTHLSNTSRIGLIRLIKSKRVSDGVVRLTFVCGEAALTYSESQQ 462

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           + + +L +   V Q  ++   ++ ++ ++KL       + +L  E L    +  +     
Sbjct: 463 QIINNLKTSWGVDQSQILQTADKFFDGWKKLGNKVDLIQEKLFQERLDS--LHGIQIAKF 520

Query: 800 -IISEVDSKELKSVMDALQKK---IQSGI--IMLVGISKEKKASVLIVVTEDL---LDRF 850
            +  +  ++ +  + + + +K       I   M +GI      ++ +  T D    ++  
Sbjct: 521 SVFEDTPTRYISQLGEIIGEKFIQNGELITQFMFLGID----FAIFVAKTGDFKTEVESI 576

Query: 851 NAVDLARLSAKVLGGGGG 868
            A +  +     L GG G
Sbjct: 577 LAKNDVKPKVSPLKGGKG 594


>gi|319654730|ref|ZP_08008809.1| hypothetical protein HMPREF1013_05431 [Bacillus sp. 2_A_57_CT2]
 gi|317393646|gb|EFV74405.1| hypothetical protein HMPREF1013_05431 [Bacillus sp. 2_A_57_CT2]
          Length = 400

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 148/388 (38%), Gaps = 28/388 (7%)

Query: 498 QGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           + E+V +A    +K+  V  +T FY   GGQ  D G   G  +        +    +   
Sbjct: 15  ETELVYQAEDDKEKIYAVLKETAFYPTGGGQPHDEGTLNGVKVLDVEEAEGEIRHYL--- 71

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
               ER +  +  S+   ID+  R      H+  H+L  A   + G              
Sbjct: 72  ----ERELDPSISSVSGEIDWNRRFDHMQQHAGQHILSAAFEELYGYKTVSFHLGKETLT 127

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           +  D++      + E    E   N II +N P+  R ++ E+A        L     + +
Sbjct: 128 IDLDISELPVRHAEE---AERLANRIILENRPIEARWVSAEEASQFPLRKQL--SVREDI 182

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R+V +   D        CGGTH SSTG++  + ++     +  I R++ I G R  + L 
Sbjct: 183 RLVMIPEFDYN-----GCGGTHPSSTGQVAGIKVLDWERQKKKI-RVQFICGNRILAQLQ 236

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN- 795
            + E  K+L+  L  S+ ++      + E  + L+      K  L   +     IA    
Sbjct: 237 SKHEITKNLSQLLNASEEDLPSAASRLIENGKNLEKQLEAAKEALLAYEAKELFIAGNGE 296

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN--AV 853
             S +      +EL+ +   +  + ++ +++L+  + + K   +     D        A 
Sbjct: 297 CTSKVFEGRSIQELQKLARLIASQSENAVVILINETAD-KLQFVCASGADSGSDMKGLAA 355

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +L +        G GGG P  AQ GG  
Sbjct: 356 ELLQKI-----NGKGGGNPQFAQGGGDK 378


>gi|94971059|ref|YP_593107.1| threonyl/alanyl tRNA synthetase, SAD [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553109|gb|ABF43033.1| Threonyl/alanyl tRNA synthetase, SAD [Candidatus Koribacter
           versatilis Ellin345]
          Length = 403

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 173/397 (43%), Gaps = 20/397 (5%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHH 557
            +++  V   +  VV D+T FY  +GGQ+ DTG      D  +L++++V +  EG+  H+
Sbjct: 18  AVLDARVEDGRAIVVLDRTAFYPTSGGQIFDTGWMELEKDARKLRVSEVGETEEGVIQHY 77

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                     +  +   ID + RR     H+  H+L  A  ++           +  +  
Sbjct: 78  VDTSDVETLKDGRVRGFIDVERRRDHMQQHTGQHVLSSAFESLFEMKTVS--FHMGAESC 135

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+  +K +   ++K  E   N++IA++ PV  +    ++A A G   +   +  +++R
Sbjct: 136 TIDL-DTKALAPEQVKKAEAVANEVIAEDRPVEIKYATVDEARAMGVRKIPPAE-REKLR 193

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           ++ ++  D        CGGTHV +TG+I  L I   +  + G  R+E + G RA +    
Sbjct: 194 LIDIKDFD-----LNACGGTHVRATGQIGGLLIRKIAKEKQG-FRVEFVCGGRAVNTARR 247

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV--EDLSCHKIADVN 795
             E L   A+       +V  +V ++ EE +       K   ++     D+   ++ D  
Sbjct: 248 DFETLTDAATLFSSHIYDVPVQVRKLIEENKAGTKREHKLLEEVASLTADVMLAQLGDKK 307

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            +    ++ D   +K +   L ++    ++ L+G     + +V+   T  L +  +   L
Sbjct: 308 VVRQFYTDRDMTFIKLLAQRLTRQ--GSVVALLGC-GGTQPAVIFAQTSGLPN--DMGGL 362

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            + +   L GG GGG   MAQ G  + +K +  +  +
Sbjct: 363 MKEALVEL-GGRGGGNKDMAQGGATDASKIEAVLEKI 398


>gi|149236427|ref|XP_001524091.1| alanyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452467|gb|EDK46723.1| alanyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 402

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 97/389 (24%), Positives = 161/389 (41%), Gaps = 45/389 (11%)

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             +H      G L     +V   D   R  +  NH+ TH+L++AL   LG  V Q GS +
Sbjct: 14  YVLHTGYFVEGSLALGDEVVAAYDELRRWPIRNNHTGTHVLNYALRETLGEGVDQKGSLV 73

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTK 671
             + LRFD +H + +T  EL+ +E   N  I +N  V  + +   +    +G  A+ G  
Sbjct: 74  AQEKLRFDFSHKQALTIKELEQVEQLSNQYIKENKQVYYKDVPLADARSINGLRAVFGET 133

Query: 672 YNDRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           Y D VRVVS+             E+    S   CGGTHV+ T EI  L I  ES I  GI
Sbjct: 134 YPDPVRVVSIGVPVETLLKNPENEEWRSISIEFCGGTHVARTSEIKDLVITEESGIAKGI 193

Query: 721 RRIEAITGQRAR---SHLMGQDEKLKSLASFLKVSQGN---------------------- 755
           RRI A+TG  A          DEKL  +                                
Sbjct: 194 RRIVAVTGHDAHAVQRIAKEFDEKLNEVEKMENGPFKESKLKEFGVALKKLTISVLDKQK 253

Query: 756 VVGRVEEI----WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810
           +  +  +I     +  + +Q   +K+ L +  + L   K  + +F+   I    ++K + 
Sbjct: 254 LTDKFGKIDKSYKDHLKAIQKEESKKTLDVVKKWLDGTKEEECDFLVARIPIGANAKAIT 313

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
                ++K+ ++  + L     + + +    +++  + +  N  +LA  + K + GG  G
Sbjct: 314 EAFTFVKKQNRAKSLYLFTGESD-RVAHGCYISDAAIAKGLNGSELAAAAVKFV-GGKAG 371

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G+ ++ Q  G N  + D A+  V    K+
Sbjct: 372 GKGNIVQGMGDNDKQVDAAVEEVTRLFKE 400


>gi|51893904|ref|YP_076595.1| alanyl-tRNA synthetase, truncated [Symbiobacterium thermophilum IAM
           14863]
 gi|51857593|dbj|BAD41751.1| alanyl-tRNA synthetase, truncated [Symbiobacterium thermophilum IAM
           14863]
          Length = 400

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 152/404 (37%), Gaps = 31/404 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +G ++  +  G    VV +QT FY  +GGQ  D+G     G +  +    +    I    
Sbjct: 17  EGHVLSCSPVGDAWAVVLNQTCFYPASGGQPSDSGT---LGGQPVLDVHAEPDGTIVHVV 73

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                G       +V  +D+  R      H+  HLL  A   +L +             +
Sbjct: 74  GGPLSGT------VVGQVDWTRRLDHMEQHTGQHLLSAAFVHLLQADTVSWHLGAEASTV 127

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
              V   + +++ +++ +E   N +I   LPV   + + E+A             +  VR
Sbjct: 128 DIAV---ENLSAEQVEEVELTCNRLIRAGLPVHAHLCSPEEAHRFPLRKP--PTVSGPVR 182

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           ++ +E  D        CGGTH+ S GE+ L+ I +    +  + R+  + GQRA    M 
Sbjct: 183 IIEIEGYDWS-----PCGGTHLRSIGELGLIKIKTWERYKRAV-RVTFLAGQRALHDYMA 236

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIA 792
            D   + LA  L +   ++    +   EE   L+     ++ +L   +         +I 
Sbjct: 237 LDRMTRDLARRLSIGAADLPRWADRTQEEVTSLRKRVRTQQEELLAVEAERLLAGARRIG 296

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
               +        + EL+ +   +      G + + G  +     ++     DL  R + 
Sbjct: 297 PARVVRQTFGGRPADELRLLAAKVAGT--PGCVAVFGT-RGALPQLIFHRAADL--RLDV 351

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +      ++  G GGG P  AQ GG    + ++A+    S +
Sbjct: 352 GQILSAVLPII-DGKGGGSPVQAQGGGTRPERLEEALDAAVSRI 394


>gi|323704225|ref|ZP_08115804.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536291|gb|EGB26063.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 395

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 92/404 (22%), Positives = 170/404 (42%), Gaps = 32/404 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           ++++  V+ +  EV+ D+T FY E+GGQ  D+G   G  +        K          I
Sbjct: 18  KVIDINVTNEYCEVILDKTYFYPESGGQPADSGFIDGIKVENVFLRDDK---------VI 68

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      ++  ID++ R      HS  HLL      +   +   +   I  D    
Sbjct: 69  HVLKTPPKNDLVICEIDWEKRFDNMQQHSGQHLLSAVFYKLF--NAETDSFSIGDDSSHI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            +T+S  ++   LK +E   N +I  NLP        +D            K ++ +R+V
Sbjct: 127 TLTNSN-LSEDNLKEVEIETNRLIYLNLP--VTSYFVKDDDLKKLPLRKKPKVDENIRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            ++  D      + CGGTHV S GEI ++ I      + G+ RIE + G RA +  + ++
Sbjct: 184 EIKDFD-----YSPCGGTHVKSLGEIGIVKIKKFERTKKGL-RIEFVCGFRAFNDYLKKN 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLNVEDLSCHKIA--DV 794
             + SL + L   +  ++ +V +I +E ++L+    K K   LQ   E L    +   + 
Sbjct: 238 NYINSLITSLSAKEEEILEKVNKILDENKELKKELIKLKDNILQYEAEKLVAESVNLKNF 297

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             ++ I ++ D KEL+ +   + K    G + ++G   +   +++I  ++D+    +   
Sbjct: 298 KLVTKIFNDRDMKELRVLSQIITK--GKGFVCILGGITD-CGNIVISRSDDV--DIDINS 352

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             +    V+  G GGG   + Q  G    K   A+    + + K
Sbjct: 353 FFKEILDVIE-GNGGGNQKICQGSGK-VEKVGLALDKAVNLISK 394


>gi|315231455|ref|YP_004071891.1| alanyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315184483|gb|ADT84668.1| alanyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 408

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 90/427 (21%), Positives = 167/427 (39%), Gaps = 50/427 (11%)

Query: 495 IVQQGEIVEEAVS--------GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
           +  +   + EA +        G KV +  D+T FY E GGQ  D G   GDG  +++  V
Sbjct: 5   LFYEDAYLNEAKAKIESLEIRGNKVRLNLDRTIFYPEGGGQPSDKGIIRGDGFEIRVEKV 64

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
               +    H   ++    +    + L +D++ R +    H+  H+L   L  +  S+ +
Sbjct: 65  Y--GKDEIWHEGTLKGREPKPGEEVELELDWEWRYENMKQHTGQHILSAVLKDLYDSNTT 122

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR-EDAIASGAA 665
             G  I  +  + ++  +  +T   + + E   N+I++++LPV     N   + + +   
Sbjct: 123 --GFQIFENYNKIEINFNGKLTWEHILNAEIRANEIVSKDLPVEIEFYNELPEDLRNQLR 180

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             L  K    +R+VS+   D        CGGTHV ST E+  + +V+       I RIE 
Sbjct: 181 KDLSDKIKPPIRIVSIPGVD-----VIPCGGTHVKSTREVGFIKVVNFYKKSKNIWRIEF 235

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           + G RA  +L    E        +      ++ RV E+  E  KL+      +L+L    
Sbjct: 236 VCGNRALRYLDELLEDYWESLDEMPNKNRPLIKRVRELKNEIVKLEEEKKALRLELWEWK 295

Query: 786 LSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
                    ++  +  +S  + E+D K+ ++ +  L  K  + I + VG       + +I
Sbjct: 296 AKALLRGSEEVKGIKIVS-TVEELDMKDAQAFVVYLVDKNPNTIALFVGR------NYVI 348

Query: 841 VVTEDLLDRFNAVDLARLSAK---------VLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
                 ++  +  +L R   K          +   GGG +            K    +  
Sbjct: 349 FAKNRGVEGVSMKELLREVIKETGGGGGGSEVLAKGGGFK--------VEPEKV---LEI 397

Query: 892 VASFLKK 898
               LK+
Sbjct: 398 AKEKLKQ 404


>gi|289677328|ref|ZP_06498218.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 174

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 6/162 (3%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I L  IVSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++ 
Sbjct: 1   TGDIALFKIVSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLT 60

Query: 762 EIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + E  R L+    + + +           +   +  V  ++  +   D K L +++D L
Sbjct: 61  AVIERNRLLEKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQL 120

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           + K+   +I+L  +  E K  ++  VT+DL  +  A DL + 
Sbjct: 121 KNKLGRAVILLGSVH-EDKVVLVAGVTKDLTGQLKAGDLMKQ 161


>gi|188589051|ref|YP_001921224.1| dhha1 domain protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188499332|gb|ACD52468.1| dhha1 domain protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 399

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 169/404 (41%), Gaps = 29/404 (7%)

Query: 500 EIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
             ++E    G +  +V ++T F+   GGQ  D G        +++ +V +K + I+    
Sbjct: 16  AEIDEIKEVGNEFHIVLNKTAFFPGGGGQRHDLGKID----EIEVLNVYEKDDLIYHVLD 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                I      +  +ID+  R     +H A H+L  +   +   +       +      
Sbjct: 72  RKPSRIHN----VKCSIDWLRRLDGMNHHLAQHILSASFFKLFNINTIA----VHHGNEF 123

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
             +  +  +T  +++S E   ND+I ++L V      + +         L    N+++R+
Sbjct: 124 STIDFNSILTEEQVRSCEKYANDVIGESLDVEFLTPTKRELKNMKLRRDLPDT-NEQIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V ++  D        C G H  ST ++ L+ I      + G  RIE ITG +A S  + +
Sbjct: 183 VKIDDLD-----LNACCGVHPKSTLDLRLIKIKKYEKHKKGS-RIEFITGSKAVSDSLEK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIAD 793
           D    S+  +L  ++   +  +E +  E + +   +    ++L+  ++        +I D
Sbjct: 237 DSFANSMCKYLNCNEKEALNGIENLKLELKNVLNENKNISIELSNYEIKEIIENSAQIND 296

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           +N + ++ +    K + +++  + +K     I L+ +  + K +++   +++ +   N  
Sbjct: 297 INIIKYVYNNKTLKFVNTIISQITEKDNK--IALIALVNDDKINLIFSCSKN-IKNVNMG 353

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +L + +  VL  G GGG   MAQ  G N    D  +    + LK
Sbjct: 354 ELLKDAI-VLIDGRGGGNQTMAQGAGKNLLNLDNTLDYAFNKLK 396


>gi|163848562|ref|YP_001636606.1| threonyl/alanyl tRNA synthetase SAD [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526497|ref|YP_002570968.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus sp. Y-400-fl]
 gi|163669851|gb|ABY36217.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450376|gb|ACM54642.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus sp. Y-400-fl]
          Length = 410

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 156/380 (41%), Gaps = 28/380 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMS 570
           V  DQ+ FY E GGQ  D G         +   V        V   I+  G  +      
Sbjct: 33  VALDQSAFYPEGGGQPADQGWLSAATDPDRRWPVIDVQSDNGVVWHILATGVQLPEPGTI 92

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   I+++ R      H   H+L  A   I   +       ++   +  D++    ++  
Sbjct: 93  VTGQINWERRFDHMQQHCGQHILTAAF--IATCNAPTVSFHLSERSVTIDLSI-GELSLD 149

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           ++++ E   N  +  NLP+  R ++  +              +D VRVVS+   D     
Sbjct: 150 QVQAAEAWANRAVWANLPIHARFVSPTELAQIPLRKP--PTVSDAVRVVSIGDID----- 202

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            + CGGTH + +GE+  + ++     + G+ R+E + G R  + L  +D  +++ A+ L 
Sbjct: 203 HSACGGTHPARSGEVGAIAVLGWGR-QRGLIRVEFVCGNRVITALHERDTAVRTAAAALS 261

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS---CHK--IADVNFMSHIISEVD 805
           V    +   V  + E  + LQ    + + +L+    +        +     ++  +   D
Sbjct: 262 VGWAELPQTVNRLQETQQSLQRELRQTQRELDALRAAQWYAQTPPVNGRRIVTATLPAAD 321

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK--VL 863
           ++ L+++      ++  GI ++ G S+  +  +++   ED     +A D  ++ A    +
Sbjct: 322 AERLRTIA-GFIAELPGGIAIVAGGSE--RPQIVVACAED-----SAGDARQILAAGMAV 373

Query: 864 GGGGGGGRPHMAQSGGPNGN 883
            GG GGG   +AQ GG + +
Sbjct: 374 LGGRGGGNARLAQGGGGSPD 393


>gi|149180556|ref|ZP_01859060.1| hypothetical protein BSG1_16405 [Bacillus sp. SG-1]
 gi|148851709|gb|EDL65855.1| hypothetical protein BSG1_16405 [Bacillus sp. SG-1]
          Length = 404

 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 131/380 (34%), Gaps = 29/380 (7%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
               +     ++T FY   GGQ  D G      +             I           L
Sbjct: 33  SEDGRWFAQLEETAFYPTGGGQPFDKGTLNNSMVTEVEEVEGIIRHYI--------DSPL 84

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +    +   I++  R      H+  H+L  + S  L          +  D    D+    
Sbjct: 85  KGTYEISGAINWTRRFDHMQQHAGQHILSASFSKSL--GYETVSFHLGRDTCTIDINT-S 141

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +T  E    E   N +I QN P+ T+ +N+E+                 +R+V +   D
Sbjct: 142 ALTEEESSKAEALANQVILQNQPIHTKWINKEEVDQYPLRKK--PAVEGDIRLVIIPEFD 199

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   CGGTH  STGE+ ++ I++    +    R+  + GQR    L  ++  LK L
Sbjct: 200 YN-----GCGGTHPRSTGEVGMIKILNWEKQKKNT-RVTFVCGQRVADQLHEKNSILKEL 253

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHI 800
              L      ++  V  + E   K + +  + +  + V +      S      V  +  +
Sbjct: 254 TGVLNAPPSEMISAVRTLIENGNKNEKLLEEARETILVYEAEDLIKSSVDRGGVKVVKKV 313

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +      +++ +   + +  +  +++L+      K   +              +L    A
Sbjct: 314 LQHRSMADMQKMARTILQTHE--VVVLLVSENGDKLQYVFGSCSSCQKDMK--ELIG-VA 368

Query: 861 KVLGGGGGGGRPHMAQSGGP 880
             L  G GGG P MAQ GG 
Sbjct: 369 LALTDGKGGGNPSMAQGGGS 388


>gi|241709472|ref|XP_002403411.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215505071|gb|EEC14565.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 587

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 13/228 (5%)

Query: 167 GPCGPCSEIFFDQGECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           GPCGP +EI  D  E      P     +      +E+WNLVF+QF +        LP   
Sbjct: 2   GPCGPSTEIHIDLAEGGGPLKPATLRVNAGSGDLVELWNLVFIQFNRDAGGNLSSLPNKH 61

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-------NNIVNHRVIV 276
           +DTGMGLER+  VLQ   +NYD DLF  L+ A ++   +           +  V +R++V
Sbjct: 62  VDTGMGLERLTAVLQNVKSNYDTDLFSPLLSALQKSARVAPYRGLVGPDASVDVAYRIVV 121

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGS 335
           DH R  +  I+DG+LP +   G  LRR++R+A   A   L   + ++  L  ++ T +G 
Sbjct: 122 DHARMFTVAISDGVLPEHFDAGNKLRRVIRKASHAAIKHLKCDQGVLASLADSVYTVLGE 181

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN 383
            YP L     L++  +  E++R+   + +    L              
Sbjct: 182 FYPNL--DLELVKNIVNLEEDRYLSQMSKAEAALHDAKPSKEISATHC 227



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 26/218 (11%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATH L+ AL  +LG    Q  S +    LRFD    K +T+ +++ ++D  N +I +N 
Sbjct: 223 SATHCLNMALRAVLG-STEQRSSLVDSRHLRFDFLSKKGLTTDQVQRVQDCCNAMIRENH 281

Query: 648 PVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            V   I+ + +A+       +   +Y   V V+++   D  + S  LC GTHVSS  ++ 
Sbjct: 282 DVQRVILPKSEALELPQLVTVANEEYPTSVSVITIGKND-NIVSRELCCGTHVSSLSDLG 340

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARS------HLMGQDEKL-KSLASFLKVSQGNVVG- 758
              + S  S+ + +R + A+ G  A +      H+  Q + L + +A+ +K+   + V  
Sbjct: 341 EFVLTSHRSVGSMVRSVCAVAGPLAVNVNSRDQHVAEQIQLLAQEIAALMKLPPDDYVSM 400

Query: 759 --------RVEEIWEEY-------RKLQLIHAKRKLQL 781
                    +     +        R  +    K K Q+
Sbjct: 401 ASCREKLHEIRRFIADNTVSLLLQRTAEEKLEKLKRQI 438


>gi|251779379|ref|ZP_04822299.1| dhha1 domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083694|gb|EES49584.1| dhha1 domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 399

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 169/403 (41%), Gaps = 29/403 (7%)

Query: 501 IVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            +++    G +  +V D+T F+   GGQ  D G        +++ +V +K + I+     
Sbjct: 17  EIDKIKEVGNEFHIVLDKTAFFPGGGGQRHDLGKID----EIEVLNVYEKDDLIYHVLDR 72

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
               I      +  +ID+  R     +H A H+L  +   +   +       +       
Sbjct: 73  KPSRIHN----VKCSIDWLRRLDGMNHHLAQHILSASFFKLFNINTIA----VHHGNEFS 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            +  +  +T  +++S E   ND+I ++L V      + +         L    N+++R+V
Sbjct: 125 TIDFNSILTEEQVRSCEKYANDVIGESLDVEFLTPTKRELKNMKLRRDLPDT-NEQIRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            ++  D        C G H  ST ++ L+ I      + G  RIE ITG +A S  + +D
Sbjct: 184 KIDDLD-----LNACCGVHPKSTLDLRLIKIKKYEKHKKGS-RIEFITGSKAVSDSLEKD 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADV 794
               S+  +L  ++   +  +E +  E + +   +    ++L+  ++        +I D+
Sbjct: 238 SFANSMCKYLNCNEKEALNGIENLKLELKNVLNENKNISIELSNYEIKEIIENSAQINDI 297

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
           + + ++ +    K + +++  + +K     I L+ +  + K +++   +++ +   N  +
Sbjct: 298 HIIKYVYNNKTLKFVNTIISQITEKDNK--IALIALVNDDKINLIFSCSKN-IKNVNMGE 354

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L + +  VL  G GGG   MAQ  G N    D  +    + LK
Sbjct: 355 LLKDAI-VLIDGRGGGNQTMAQGAGKNLLNLDNTLDYAFNKLK 396


>gi|261419834|ref|YP_003253516.1| threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y412MC61]
 gi|319766649|ref|YP_004132150.1| threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y412MC52]
 gi|261376291|gb|ACX79034.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y412MC61]
 gi|317111515|gb|ADU94007.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y412MC52]
          Length = 389

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 149/388 (38%), Gaps = 27/388 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G+   V   +T FY E GGQ  D G   G  +     +  +    +  H  +       
Sbjct: 25  DGETYVVTLAETAFYPEGGGQPSDAGTIAGLPVLDVFDENGEVYHRLPAHPGM------- 77

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   +D + RR  +  HS  HLL               G  +  D +  D+T    
Sbjct: 78  --GVVSCVLDMKRRRDHTQQHSGQHLLSAVFIE--QLGAETVGFHLGRDVVTIDITVD-A 132

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T +E+ ++E+  N++I  NLPV T  +  E+A                VRVV ++  D 
Sbjct: 133 LTESEMLAVENRANELIYANLPVDTYWVTPEEAERMPFRKR--PDVQGNVRVVEMKGVD- 189

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                + C GTHV  TGEI ++ ++       G+ R+  + G RA +        +++ A
Sbjct: 190 ----LSACCGTHVKRTGEIGVIKLLKAER-HRGMTRLSFLCGGRALADYQQTHHIVQAAA 244

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
                S+  ++  + +  +E ++L+    + +  +   +           +     +  +
Sbjct: 245 GRFGTSRDQLLEVIVKWEQEKKELEKRLRQYEEIVFAVEAKRAAAESGRAVIGRYDQYGA 304

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           KEL+ +   +  +       L+  + + +A +     +      +A +  +  A  L GG
Sbjct: 305 KELQIIARLIANRYGKT--ALLASTPDWRAVIA----KAPSSLLHAGNWLKEQAA-LFGG 357

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            GGG     Q+  P+     Q ++ V +
Sbjct: 358 KGGGNERQGQAAFPSLEALSQFLSRVEA 385


>gi|18976557|ref|NP_577914.1| partial alanyl-tRNA synthetase matches COOH terminus half
           [Pyrococcus furiosus DSM 3638]
 gi|18892116|gb|AAL80309.1| partial alanyl-tRNA synthetase matches COOH terminus half
           [Pyrococcus furiosus DSM 3638]
          Length = 404

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 88/408 (21%), Positives = 157/408 (38%), Gaps = 32/408 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +IV+    G  V+V  D+T FY E GGQ GD G   G+G  + + +  +K   IF     
Sbjct: 17  KIVDLKFEGDNVKVELDRTIFYPEGGGQPGDKGVIKGEGFEIIVENTIEKEGRIFH-IGK 75

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +         S+ L +D+  R      H+  H+L   L  +     +  G  I  +  + 
Sbjct: 76  LIGKTPNKGDSVELELDWDWRYGNMQIHTGQHILSAVLKKMYNLDTT--GFTIFGEYAKI 133

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           +V     IT   ++  E   N II  +LPV+    +      +        K   ++R+V
Sbjct: 134 EVN--GEITWDIIERAELEANKIIISDLPVIIEEYHELPEELASELRKSVAKVKGKIRIV 191

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +   D        CGGTHV ST E+ ++ ++        + RIE   G RA   +    
Sbjct: 192 KIGDVD-----ITPCGGTHVRSTKEVGIIKVLRFYKKSRDLWRIEFTCGFRAIREINIIL 246

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADV 794
           +   +    +      +V RV+E+ +    L+    + + ++             KI D 
Sbjct: 247 QDYLNSLELMSNKNPPLVKRVKELLDTTNSLEEKIEELRREIWEWKGKALIEKATKIGDY 306

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +   +   D K+ ++      K+    I++L          V+    E++    +  +
Sbjct: 307 -LVVTYVESWDMKDAQAFAVDFVKRNPKTILLLASEK-----YVVFARNENVP--VSMRE 358

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ-----AIAGVASFLK 897
           L R  A  L GG GGG  ++A+      +   +     A+  V   L+
Sbjct: 359 LFRKVASEL-GGKGGGTDNLARG---KVDAKPETILSVALEKVKETLQ 402


>gi|52081131|ref|YP_079922.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786509|ref|YP_092338.1| hypothetical protein BLi02774 [Bacillus licheniformis ATCC 14580]
 gi|52004342|gb|AAU24284.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349011|gb|AAU41645.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 410

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 153/392 (39%), Gaps = 27/392 (6%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
            V ++ ++T FY   GGQ  DTG   G  +        +    +       ER +     
Sbjct: 32  DVYIILEETAFYPTGGGQPHDTGTLNGVKVLNVDEIDGEIRHYV-------ERPLPHLND 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +V  ID++ R      H+  H+L  A + +   H            +  DV+    +T 
Sbjct: 85  QVVGVIDWERRFDHMQQHTGQHILSAAFAQLYDLHTVGFHLGNDTVTIDLDVS---ELTE 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
                 E   N+II +N  +V + +  +D +      L      + +R+V ++  D    
Sbjct: 142 EMAGKAEKLANEIITENRSIVAKWVEYDDLVNYPIRKL--PSVKENIRLVMIDEFDYN-- 197

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
               CGGTH S+TGE+  + +++    R  I R+  + G R  +    + + +  L   L
Sbjct: 198 ---GCGGTHPSATGEVGAIKVLNWERQRKKI-RLYFVCGNRVITQFDQKQKAIVELTGLL 253

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCHKI--ADVNFMSHIISEV 804
              +G +   ++ + E  +KL        ++ LQ    +L        D   +    S+ 
Sbjct: 254 NRPEGELSEAIKRLLENVKKLDKALLESYEKNLQYEANELLAKSAIQNDTVMVIETFSDR 313

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
             +EL+ +   +  + +  +I  +    + +  ++    E   ++ N  DL + +  ++ 
Sbjct: 314 SIQELQKLAKMIADREKRALIFFLS-ENDHRFQLVCGRGEA--NKMNMRDLMQEALSLI- 369

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G GGG    AQ GG      ++ +  V + +
Sbjct: 370 DGKGGGNKMFAQGGGTASFTKEKFMKNVMNII 401


>gi|259015947|gb|ACV89256.1| alanyl-tRNA synthetase [Strangalia bicolor]
          Length = 121

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 14/125 (11%)

Query: 89  FFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLW 140
           FFEM+ N+S G Y K      AW+ LT+   L   RLY+T +  D+        E  ++ 
Sbjct: 1   FFEMMXNWSLGDYVKNEVCTWAWEYLTERLKLPADRLYVTYFGGDQSSGLEPDYECKQVK 60

Query: 141 KKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG--LPGSSEEGERYI 198
            +I       +I  +  DNFW M ETGPCGPCSE+ FD+   I G       + +    +
Sbjct: 61  YQIIS-KPSHVIPGSMKDNFWEMGETGPCGPCSELHFDR---IGGREVPELVNNDDPDVL 116

Query: 199 EIWNL 203
           EIWNL
Sbjct: 117 EIWNL 121


>gi|168217153|ref|ZP_02642778.1| DHHA1 domain protein [Clostridium perfringens NCTC 8239]
 gi|182380730|gb|EDT78209.1| DHHA1 domain protein [Clostridium perfringens NCTC 8239]
          Length = 400

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 166/404 (41%), Gaps = 28/404 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++   ++    
Sbjct: 16  GEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEEEGKVYHVLE 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                  +   +L   +D++ R      H   HLL      +     +  G  +  +   
Sbjct: 72  K----EPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLF--GANTYGFHLGKEVST 125

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+     +    ++  E   N +I +NL V +   ++++         L    ++ +R+
Sbjct: 126 VDIVGF--LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALPKT-DEEIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +   D        C G H  +T ++ ++ I           RIE + G RA S    +
Sbjct: 183 VEIVGLD-----LNACCGVHPRNTRDLQVIKIRRWE-KHKNATRIEYVAGNRAVSDFFTK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD 793
           DE L  +   LK  +G+ +  V+ + E  + L   + K K ++    +        +I  
Sbjct: 237 DEILGEICKLLKSGEGDTLNAVKNLLENNKNLVDENRKVKAEIGDYKIKEMLNKSERIGS 296

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           +  ++ I    D+K +  + + + ++ +   I+L  +    + +++   ++D+  + N  
Sbjct: 297 ITLVNEIFDGEDTKHIGKLANKITEEYE--AIVLFAVKNGDRVNLIFNSSKDM-KKVNMS 353

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           D+ + +  ++  G GGG    AQ GG N    + AI    + ++
Sbjct: 354 DILKDTITLI-DGRGGGNQFAAQGGGKNNGNTEVAIDYATNKIR 396


>gi|226312694|ref|YP_002772588.1| truncated alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226095642|dbj|BAH44084.1| truncated alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 403

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/398 (19%), Positives = 151/398 (37%), Gaps = 27/398 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
                   VV +QT FY   GGQ  D G         +I  V  +     + H +     
Sbjct: 24  VEQDGTPYVVLNQTAFYPTGGGQPSDLGVLE------EIRVVDVEEVDGEIRHRLEAPLS 77

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 +   ID+  R      H+  H+L  +   ++          +  + +  DV   
Sbjct: 78  ESIGE-VTGYIDWDRRFDHMQQHAGQHILSASFLEVVQ--AETVAFHLGKERITIDVRLD 134

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +  T    + +E   N I+ +N P++ R ++ E+               + +RVV +   
Sbjct: 135 ELTTEV-WEKVEKRANQIVLENHPILARFVDDEELATLPLKK--QPTVTENIRVVMIPEF 191

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        CGGTH + TGE+ ++ I+       G  R+E I G RA      +   ++ 
Sbjct: 192 DYN-----PCGGTHPARTGEVGMIKILGWER-HRGNIRLEFICGWRALRDYNQKQAVVRD 245

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-----RKLQLNVEDLSCHKIADVNFMSH 799
            A  L  ++G ++ + E +  E   L+   A+      ++++N +  +  ++     +  
Sbjct: 246 TAKLLATNEGELIAQTERLLAERDTLKAKLAEVDKQLLEVEVNQQLATASQLGQSRLIMC 305

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
             S+   ++L+             I +L   + E K  ++    +D+    N   + + +
Sbjct: 306 TFSDKTIQQLQQFAQLATALAPDAICLLAATT-EDKMQIVFGRGQDVNVAIN--QVLKET 362

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             ++  G GGG P MAQ GG     A++ +      L+
Sbjct: 363 LPIIN-GKGGGNPAMAQGGGQAVVDAEEVLLHARKLLE 399


>gi|297852292|ref|XP_002894027.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339869|gb|EFH70286.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 400

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 61/222 (27%)

Query: 113 LLTKEFDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
            +T+ + L   R+Y T ++ D         EA  +W K   L + +++     DNFW M 
Sbjct: 8   FMTQVYGLPTDRIYSTYFEGDVKAGLQPDNEAGDIWLKF--LPSGRVMPFDCKDNFWEMG 65

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPC+EI +D+           +++    +EIWNLVF+QF                
Sbjct: 66  DTGPCGPCTEIHYDR-----DAASLVNKDDPTCLEIWNLVFIQFNNS------------- 107

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSF 284
                          K    D+D                        +RV+ D +R+   
Sbjct: 108 --------------GKVGADDVD-------------------RVGTAYRVVADPIRTLLI 134

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
            I +G  P +EG  + LR I+R A+ Y + +   E    + +
Sbjct: 135 AIVNGSRPGSEGLQHDLRSILRGAVRYGKDILKAEEGYFNAV 176


>gi|18309700|ref|NP_561634.1| DHHA1 domain protein [Clostridium perfringens str. 13]
 gi|110799085|ref|YP_695166.1| DHH domain-containing protein [Clostridium perfringens ATCC 13124]
 gi|168214312|ref|ZP_02639937.1| DHHA1 domain protein [Clostridium perfringens CPE str. F4969]
 gi|18144377|dbj|BAB80424.1| truncated alanine-tRNA ligase [Clostridium perfringens str. 13]
 gi|110673732|gb|ABG82719.1| DHHA1 domain protein [Clostridium perfringens ATCC 13124]
 gi|170714209|gb|EDT26391.1| DHHA1 domain protein [Clostridium perfringens CPE str. F4969]
          Length = 400

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 166/404 (41%), Gaps = 28/404 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++   ++    
Sbjct: 16  GEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEEEGKVYHVLE 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                  +   +L   +D++ R      H   HLL      +     +  G  +  +   
Sbjct: 72  K----EPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLF--GANTCGFHLGKEIST 125

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+     +    ++  E   N +I +NL V +   ++++         L    ++ +R+
Sbjct: 126 VDIVGF--LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALPKT-DEEIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +   D        C G H  +T ++ ++ I           RIE + G RA S    +
Sbjct: 183 VEIVGLD-----LNACCGVHPRNTRDLQVIKIRRWE-KHKNATRIEYVAGNRAVSDFFTK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD 793
           DE L  +   LK  +G+ +  V+ + E  + L   + K K ++    +        +I  
Sbjct: 237 DEILGEICKLLKSGEGDTLNAVKNLLENNKNLVDENRKVKAEIGDYKIKEMLNKSERIGS 296

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           +  ++ I    D+K +  + + + ++ +   I+L  +    + +++   ++D+  + N  
Sbjct: 297 ITLVNEIFDGEDTKHIGKLANKITEEYE--AIVLFAVKNGDRVNLIFNSSKDM-KKVNMS 353

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           D+ + +  ++  G GGG    AQ GG N    + AI    + ++
Sbjct: 354 DILKDTITLI-DGRGGGNQFAAQGGGKNNGNTEVAIDYATNKIR 396


>gi|89101059|ref|ZP_01173899.1| hypothetical protein B14911_07628 [Bacillus sp. NRRL B-14911]
 gi|89084232|gb|EAR63393.1| hypothetical protein B14911_07628 [Bacillus sp. NRRL B-14911]
          Length = 398

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 138/377 (36%), Gaps = 26/377 (6%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            S  K   V D+T FY   GGQ  DTG   G  +     +  +    +           L
Sbjct: 28  NSDGKWYAVLDRTAFYPTGGGQPFDTGTIHGISVTDVEEEEGEIRHYL--------EERL 79

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   +++Q R      HS  H+L  A   + G              +  +    +
Sbjct: 80  PESGEVDGRVNWQRRFDHMQQHSGQHILSAAFDELFGYRTVSFHLGKETLTIDIET---E 136

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            ++  E    E   N+II  NLP+ T+ ++  +           TK  + +R+V +   D
Sbjct: 137 NLSEEEAARAERKSNEIITDNLPIETKWVSESELAGYPLRKE--TKVKENIRLVIIPEFD 194

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   CGGTH  +TGE+  + I+  S  +    R+E + G R    L  ++  +   
Sbjct: 195 YN-----GCGGTHPKATGEVQAIKILGWSRQKKQT-RVEFVCGGRVLKQLHTKNVIVNRT 248

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK---IADVNFMSHIIS 802
              +   +G +   + ++ +  ++++    + K QL  ++   +    +     +  +  
Sbjct: 249 GQLISSPEGEIPEAIIKLLDTQKQMEKELEELKNQLLEQEGKEYARSILDGSAIIRKVFR 308

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           + + KEL+ +  ++  +     I+L      ++   +               + +     
Sbjct: 309 DRNVKELQKLAKSIAIQNDQA-IVLFAAENGRQLQAVCASGTKTEADMK--KIIQSILPA 365

Query: 863 LGGGGGGGRPHMAQSGG 879
           +  G GGG  H AQ GG
Sbjct: 366 IH-GRGGGNKHFAQGGG 381


>gi|254520162|ref|ZP_05132218.1| threonyl/alanyl tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226913911|gb|EEH99112.1| threonyl/alanyl tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 399

 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 79/408 (19%), Positives = 158/408 (38%), Gaps = 31/408 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + +I+       K  +  D+T F+   GGQ  D G   G    + + DV ++   I+   
Sbjct: 15  EAKIIYVKKIDDKFHIALDKTAFFPGGGGQCCDIGELNG----INVLDVYEENREIYHVV 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           +            +   ID+  R      H A H+L      +   +       I     
Sbjct: 71  SQDISD----STIVKGKIDWDRREDGMHQHLAQHVLSGCFFKLFNCNTVS----IHLGKD 122

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
              V     +T  +++  E   N II +N+ V + +   ++         L     + +R
Sbjct: 123 ISTVDIIGNLTEEKIRKAEKMANYIIRENILVESFVPTEKELENMNLRRDLPNT-EEEIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           VV +   D        C G H   T ++ L+ I           RIE ++G+RA    + 
Sbjct: 182 VVKIGDLD-----INACCGVHPKRTLDLKLIKIKKYE-KNKNNTRIEFLSGERAVKDSLY 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIA 792
           +D+ LK + ++L  ++   +  ++ +      L     K + +L   ++        K  
Sbjct: 236 KDKMLKDICNYLSSNEEEALNSIKNLKSNIDALSNEKRKLEEELINYEIENILSNSSKEN 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG--ISKEKKASVLIVVTEDLLDRF 850
           D+  ++ I +E     ++ + + +  +  S II L     +   K ++L   ++DL ++ 
Sbjct: 296 DLTIITKIFNERSIDYIRKLANKIGDR--SNIICLFATINNNNNKTNILFSCSKDL-EQV 352

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           N   L + S K +  G GGG   +AQ  G N    ++ +  + + +K+
Sbjct: 353 NMGKLLKESIKEIN-GKGGGSKILAQGSGENIE-IEKYLNNIKNKIKE 398


>gi|33322806|gb|AAQ07138.1|AF496449_1 alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. lactis]
          Length = 193

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 7/188 (3%)

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763
           I +  I+SE +I AG+RRIEA+T + A  +L G+ + L  + + +K     ++  ++  +
Sbjct: 7   IGVFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKAEDIQSKIASL 66

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE R  +  +A  K Q+N             + D+  ++ I       +L+ + D  + 
Sbjct: 67  QEELRSAEKQNAAYKAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKS 126

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + +S +++L   S++K   ++ +  + L     A DL +  A +  GG  GGRP+MAQ+G
Sbjct: 127 EGKSDVLILGAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIFXGGX-GGRPNMAQAG 185

Query: 879 GPNGNKAD 886
           G       
Sbjct: 186 GKKPEGLQ 193


>gi|253573261|ref|ZP_04850604.1| threonyl/alanyl tRNA synthetase SAD [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846789|gb|EES74794.1| threonyl/alanyl tRNA synthetase SAD [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 389

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 158/399 (39%), Gaps = 36/399 (9%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           ++      V VV +++ FY   GGQ  DTG        + + DV  + + +         
Sbjct: 22  DKLEREDGVYVVLEESAFYPHGGGQPNDTG----RIGGIPVLDVISEGDEVLHKVERFP- 76

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                E  +   ID+  R      HS  HLL      +           +  D    DV 
Sbjct: 77  ----EEAQVRCEIDWNRRFDHMQQHSGQHLLSAVCRELYE--AMTLSFHLGEDYCTIDVD 130

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
             + ++S +L++IE   N  I  N  +    + +E+A              DRVR+V +E
Sbjct: 131 RPE-LSSEQLEAIEREANRHIYLNHKISGYFVTQEEASRLPLVKPPKAV--DRVRIVEME 187

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
                      CGGTHV++TG I ++ ++     + G  RI    G RA      Q   L
Sbjct: 188 -----DVEYNGCGGTHVAATGAIGMIKLLKTE-KQKGNVRIFFKCGYRALREFQEQQHIL 241

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL---QLNVEDLSCHKIADVNFMSH 799
            S+ + L+  + +++ R+++  +E ++LQ      K    ++ V +L   +   +  ++ 
Sbjct: 242 GSITAKLRTGRDSILERLDKWEDEQKRLQREFDTLKEAMDEMTVRELLTKREGGI--IAQ 299

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           I ++   K+L+S+   L     S   +L+    E+K  +      +     +     +  
Sbjct: 300 IFADKSLKDLQSLAQKLTAH--SDAAVLLATEAEQKVVLA----HNGSRSLSCGAFFKEH 353

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                GG GGG   +AQ+G    +  + A+     F+K+
Sbjct: 354 LSA-YGGKGGGSDKLAQAG---FSSWEDALTF-YEFVKQ 387


>gi|169826273|ref|YP_001696431.1| alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168990761|gb|ACA38301.1| Alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 426

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 147/393 (37%), Gaps = 22/393 (5%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E     +  VV   T FY   GGQ  DTG   G    + + DV+K  E I      ++ 
Sbjct: 56  KEIDELGRHYVVLSNTAFYPTGGGQPHDTGTLNG----IDVIDVEKNGEEIRH---YMQG 108

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            I   +  +  T+++  R      H+  H+L  A   +           +    +  D+ 
Sbjct: 109 DISELKGIVHGTLNWSRRFDHMQQHAGQHILTAAF--VELFDAQTVSFHLGSQHVTIDIA 166

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
               +T  +L + E   N++I +NLP+ T  +   + +       +       +R+V + 
Sbjct: 167 VDT-LTEQQLAAAEARANEVILENLPIETTWITENELVHYHLRKEV--AVAGDIRLVIIP 223

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
             D        CGGTH +STG++  + I+       G  R+  + GQR    L  + + L
Sbjct: 224 NYDYN-----GCGGTHPTSTGQVNAIKILGTE-KMKGNVRVSFVCGQRVLHELAMRKKVL 277

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
             +A  L V +      + +I    +  +      K +L   +         N M+    
Sbjct: 278 GDVARQLSVPEVEAATALTKILSAQKHTERALVAAKEELLTYEAKALVSNSGNLMTAAFQ 337

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           +   +EL+ +   +  +    I +LV  S E K   +    +++     A       A  
Sbjct: 338 QRTMQELQKLARTIVSEHDDMITLLVSES-EGKLQFVAARGKNVSKSMKA---IAEKALP 393

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           L  G GGG   M Q GG      ++ +  + + 
Sbjct: 394 LINGKGGGSDQMVQGGGECIISKEELLEAIQNI 426


>gi|212224908|ref|YP_002308144.1| alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           onnurineus NA1]
 gi|212009865|gb|ACJ17247.1| alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           onnurineus NA1]
          Length = 404

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 146/385 (37%), Gaps = 32/385 (8%)

Query: 500 EIVEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            +V+    G  V  +  D+T FY E GGQ  D G   G+G R+ +   +        H  
Sbjct: 17  AVVQAVEQGNGVIRLALDRTIFYPEGGGQPSDRGVIEGNGFRVLV--DRVYERDRIWHEG 74

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            +E  +      + L +D+  R +   NH+  H+L   L  + G   +  G  I  D  +
Sbjct: 75  KLEGRLPEAGERVRLVLDWDWRYENMKNHTGQHILSAVLKNLYGLDTT--GFQIFDDYNK 132

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            +V     +    +   E   N I+ + +PV            +       +K  DRVR+
Sbjct: 133 IEVN--GELDWEMITRAEIEANSIVWEAIPVTVEEFKDLPDDIARTLRKHVSKVTDRVRI 190

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +   D        CGGTHV +T EI L+ ++        + RIE + G RA  +L   
Sbjct: 191 VMIGDID-----RTPCGGTHVRNTSEIGLIKVLRFYRKSKKLWRIEFVAGNRALKYLNKL 245

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIAD 793
                     +      +V RV+++  E  KL+      + +L             +I  
Sbjct: 246 LADYWESLDEMPNKNRPLVERVKDLKAELDKLEEEKDNLRKELWEWKAKALLDRAEEIGG 305

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           V  +SH I   D K+ ++ +  L  K    I ++V      K  V+     D ++  +  
Sbjct: 306 VRIVSH-IESADMKDAQAFVVYLVDKNPGTIALVV-----GKNYVIFAKNRD-VEGISMN 358

Query: 854 DLARLSAKVLGG--------GGGGG 870
           +L +     +GG          GGG
Sbjct: 359 ELLKEVLAKVGGGGGGGEMLARGGG 383


>gi|110801783|ref|YP_698031.1| DHH domain-containing protein [Clostridium perfringens SM101]
 gi|110682284|gb|ABG85654.1| DHHA1 domain protein [Clostridium perfringens SM101]
          Length = 400

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 166/404 (41%), Gaps = 28/404 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++   ++    
Sbjct: 16  GEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEEEGKVYHILE 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                  +   +L   +D++ R      H   HLL      +     +  G  +  +   
Sbjct: 72  K----EPKKFKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLF--GANTCGFHLGKEIST 125

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+     +    ++  E   N +I +NL V +   ++++         L    ++ +R+
Sbjct: 126 VDIVGF--LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALPKT-DEEIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +   D        C G H  +T ++ ++ I           RIE + G RA S    +
Sbjct: 183 VEIVGLD-----LNACCGVHPRNTRDLQVIKIRRWE-KHKNATRIEYVAGNRAVSDFFTK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD 793
           DE L  +   LK  +G+ +  V+ + E  + L   + K K ++    +        +I  
Sbjct: 237 DEILGEICKLLKSGEGDTLNAVKNLLENNKNLVDENRKVKAEIGDYKIKEMLNKSERIGS 296

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           +  ++ I    D+K +  + + + ++ +   I+L  +    + +++   ++D+  + N  
Sbjct: 297 ITLVNEIFDGEDTKHVGKLANKITEEYE--AIVLFAVKNGDRVNLIFNSSKDM-KKVNMS 353

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           D+ + +  ++  G GGG    AQ GG N    + AI    + ++
Sbjct: 354 DILKDTITLI-DGRGGGNQFAAQGGGKNNGNTEVAIDYATNKIR 396


>gi|169344498|ref|ZP_02865467.1| DHHA1 domain protein [Clostridium perfringens C str. JGS1495]
 gi|169297418|gb|EDS79527.1| DHHA1 domain protein [Clostridium perfringens C str. JGS1495]
          Length = 400

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 167/404 (41%), Gaps = 28/404 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++   ++    
Sbjct: 16  GEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEEEGKVYHVLE 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                  +   +L   +D++ R      H   HLL      +     +  G  +  +   
Sbjct: 72  K----EPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLF--GANTCGFHLGKEIST 125

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+     +    ++  E   N +I +NL V +   ++++         L    ++ +R+
Sbjct: 126 VDIVGF--LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALPKT-DEEIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +   D        C G H  +T ++ ++ I           RIE + G RA S    +
Sbjct: 183 VEIVGLD-----LNACCGVHPRNTRDLQVIKIRRWE-KHKNATRIEYVAGNRAVSDFFTK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD 793
           DE L  +   LK  +G+ +  V+ + E  + L   + K K ++    +        +I  
Sbjct: 237 DEILGEICKLLKSGEGDTLNAVKNLLENNKNLVDENRKVKAEIGDYKIKEMLNKSERIGS 296

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           +  ++ I    D+K +  + + + ++ +   I+L  +   ++ +++   ++D+  + N  
Sbjct: 297 ITLVNEIFDGEDTKHIGKLANKITEEYE--AIVLFAVKNGERVNLIFNSSKDM-KKVNMS 353

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           D+ + +  ++  G GGG    AQ GG N    + AI    + ++
Sbjct: 354 DILKDTITLI-DGRGGGNQFAAQGGGKNNGNTEVAIDYATNKIR 396


>gi|205372400|ref|ZP_03225214.1| hypothetical protein Bcoam_02729 [Bacillus coahuilensis m4-4]
          Length = 396

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 149/389 (38%), Gaps = 33/389 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
              IV++      + VV ++T FY   GGQ  DTG   G  +     +  +    I    
Sbjct: 16  NTHIVQQHKDEIGLYVVLEETIFYPTGGGQPHDTGTMNGVVVTQVEREDGEIRHYI---- 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                     E  + L +D+  R      H+  H+L  A +  L          +  D L
Sbjct: 72  -----ETALPEGEVTLELDWNRRFDHMQQHAGQHILSAAFAESL--GYETVSFHLGTDFL 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+     +T  E    ED  N II    P+ T+ ++RE+ I             + +R
Sbjct: 125 TIDLKTPS-LTPEEALQAEDLANKIIQDARPIETKWVSREELINYPLRK--HISVEEDIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +   D        CGGTH   T E+  + +        G  R+  + G R R  L G
Sbjct: 182 LVIIPEFDYN-----ACGGTHPRLTSEVGTIKVFDWE-KHRGNVRLHFVCGDRVRQQLQG 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIA 792
           + E +++L S L+  +G +V   E++    +  +      K QL   +L           
Sbjct: 236 KHEAIRNLTSTLQSPEGKLVEAAEKLLHNQKDQEKEIESLKEQLLSFELKDLVANAATKE 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
              ++    +    KEL+++   + +     +++L  +  ++K  +++    +      A
Sbjct: 296 SYAYIKGAFTHRPIKELQTLAQNITEDHNQMVVVL-TVQNDEKLQLVMAKGSEP-----A 349

Query: 853 VDL--ARLSAKVLGGGGGGGRPHMAQSGG 879
           VD+      A  L  G GGG+ ++ Q GG
Sbjct: 350 VDIRSVAKLAFHLINGKGGGKEYLVQGGG 378


>gi|145640916|ref|ZP_01796498.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274430|gb|EDK14294.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 134

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)

Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           ++      K +  ++       S  KI DV+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 1   MEKELQGLKEKAAMQAGSDFVKSAVKINDVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 60

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 61  IAFASIL-DEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 118

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 119 VAQAIKVAQDWLNK 132


>gi|20807415|ref|NP_622586.1| metal-dependent hydrolase [Thermoanaerobacter tengcongensis MB4]
 gi|20515937|gb|AAM24190.1| predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Thermoanaerobacter
           tengcongensis MB4]
          Length = 418

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 155/398 (38%), Gaps = 31/398 (7%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
               +  VV D+T FY E GGQ  DTG  IG    ++  + + +   +            
Sbjct: 42  EKDGEKTVVLDRTYFYPEGGGQPSDTGK-IGSKSVIKAYEKKGEVYHVV--------EDF 92

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   ID+  R      H+  HLL   L  +           I  +     VT  +
Sbjct: 93  PEGERVHCVIDWDRRFDHMQQHTGQHLLSSVL--LKKYGADTESFSIGENSSHITVTK-E 149

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
             T  E+  +E  VN +I +NL    +    ++ + S        +  + +R+V +E  D
Sbjct: 150 FFTEEEIHEVEKEVNGLIYKNLA--VKSYFADEKLISKLPLRKKPQVKENIRIVEIEGID 207

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                 + CGGTHV +TGEI +L I        G  R+E + G RA      ++  +  L
Sbjct: 208 -----YSPCGGTHVKNTGEIGILKIKKWERTNKGA-RLEFVCGFRALEDYQKKNSLVNFL 261

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHI 800
              L   +  +   ++++ E+YR+ +      K ++  E+             ++ +  +
Sbjct: 262 IQVLSEKEEGIAEHLQKLLEDYREAKREVNFLKEKILKEEAENLVKKSELYGGIHIVYSL 321

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
               D ++LK +   +  + +S  + ++G  +   A +++  + D+    N     +   
Sbjct: 322 YEGRDPEDLKMLGKFVTAESKS--VAILGNKRGDVADIVVARSYDVDIVVNG--FFKEVL 377

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +    G GGG     Q GG   ++ + A+     F+ +
Sbjct: 378 RT-FDGKGGGSAQFCQGGGS-PSRLELAMDKALKFVIE 413


>gi|255307175|ref|ZP_05351346.1| putative RNA-binding protein [Clostridium difficile ATCC 43255]
          Length = 399

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 136/335 (40%), Gaps = 20/335 (5%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +  +ID+  R      H   H+L          + +  G  +  +    D+     + 
Sbjct: 78  HKVKCSIDWDRREDGMHQHFGQHVLSGCFFKTF--NANTTGFHLGNEYSTVDI--EGNLE 133

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +++ IE   N+II QN+ V T +  +++         L    ++ +RV+ +   D   
Sbjct: 134 EDKIREIELFANEIIRQNIQVETLLPTKKELKKIWLRRDLPNT-DEEIRVIKIGDLDTN- 191

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C G H  STGE+ ++ I      ++   RIE + G+RA   ++ +D  L  +  +
Sbjct: 192 ----ACCGVHPKSTGELRMIKIKKWEKHKS-STRIEFLAGKRAVDEVLKRDIYLTKICRY 246

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISE 803
           L  S+ + +  +  +  +  +  +   + +      Q+       +K+ +++ +  I  +
Sbjct: 247 LSCSEEDAINGIVNLNSKVEEALIKKRRLEEVVSTYQVKEMIEKANKVGNISVIKKIYDD 306

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            D K +  + + + +      I L+ +    K +++   +++L    N   L + +  ++
Sbjct: 307 EDLKYVNKIANKIAE--YENSIALLAVKFNDKINLVFACSKNL-KDINMGVLLKDAISLI 363

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             G GGG   +AQ GG N    +  +      ++K
Sbjct: 364 -DGKGGGSKVLAQGGGKNNGNLEATLDYAFMKIEK 397


>gi|254975759|ref|ZP_05272231.1| putative RNA-binding protein [Clostridium difficile QCD-66c26]
 gi|255093146|ref|ZP_05322624.1| putative RNA-binding protein [Clostridium difficile CIP 107932]
 gi|255314888|ref|ZP_05356471.1| putative RNA-binding protein [Clostridium difficile QCD-76w55]
 gi|255517562|ref|ZP_05385238.1| putative RNA-binding protein [Clostridium difficile QCD-97b34]
 gi|255650673|ref|ZP_05397575.1| putative RNA-binding protein [Clostridium difficile QCD-37x79]
 gi|260683762|ref|YP_003215047.1| putative RNA-binding protein [Clostridium difficile CD196]
 gi|260687422|ref|YP_003218556.1| putative RNA-binding protein [Clostridium difficile R20291]
 gi|306520599|ref|ZP_07406946.1| putative RNA-binding protein [Clostridium difficile QCD-32g58]
 gi|260209925|emb|CBA63887.1| putative RNA-binding protein [Clostridium difficile CD196]
 gi|260213439|emb|CBE05105.1| putative RNA-binding protein [Clostridium difficile R20291]
          Length = 399

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 136/335 (40%), Gaps = 20/335 (5%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +  +ID+  R      H   H+L          + +  G  +  +    D+     + 
Sbjct: 78  HKVKCSIDWDRREDGMHQHFGQHVLSGCFFKTF--NANTTGFHLGNEYSTVDI--EGNLE 133

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +++ IE   N+II QN+ V T +  +++         L    ++ +RV+ +   D   
Sbjct: 134 ENKIREIELFANEIIRQNIQVETLLPTKKELKKIWLRRDLPNT-DEEIRVIKIGDLDTN- 191

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C G H  STGE+ ++ I      ++   RIE + G+RA   ++ +D  L  +  +
Sbjct: 192 ----ACCGVHPKSTGELRMIKIKKWEKHKS-STRIEFLAGKRAVDEVLKRDIYLTKICRY 246

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISE 803
           L  S+ + +  +  +  +  +  +   + +      Q+       +K+ +++ +  I  +
Sbjct: 247 LSCSEEDAINGIVNLNSKVEEALIKKRRLEEVVSTYQVKEMIEKANKVGNISVIKKIYDD 306

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            D K +  + + + +      I L+ +    K +++   +++L    N   L + +  ++
Sbjct: 307 EDLKYVNKIANKIAE--YENSIALLAVKFNDKINLVFACSKNL-KDINMGVLLKDAISLI 363

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             G GGG   +AQ GG N    +  +      ++K
Sbjct: 364 -DGKGGGSKVLAQGGGKNNGNLEATLDYAFMKIEK 397


>gi|168209904|ref|ZP_02635529.1| DHHA1 domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|170712001|gb|EDT24183.1| DHHA1 domain protein [Clostridium perfringens B str. ATCC 3626]
          Length = 400

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 166/404 (41%), Gaps = 28/404 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++   ++    
Sbjct: 16  GEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEEEGKVYHVLE 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                  +   +L   +D++ R      H   HLL      +     +  G  +  +   
Sbjct: 72  K----EPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLF--GANTCGFHLGKEIST 125

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+     +    ++  E   N +I +NL V +   ++++         L    ++ +R+
Sbjct: 126 VDIVGF--LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALPKT-DEEIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +   D        C G H  +T ++ ++ I           RIE + G RA S    +
Sbjct: 183 VEIVGLD-----LNACCGVHPRNTRDLQVIKIRRWE-KHKNATRIEYVAGNRAVSDFFTK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD 793
           DE L  +   LK  +G+ +  V+ + E  + +   + K K ++    +        +I  
Sbjct: 237 DEILGEICKLLKSGEGDTLNAVKNLLENNKNIVDENRKVKAEIGDYKIKEMLNKSERIGS 296

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           +  ++ I    D+K +  + + + ++ +   I+L  +    + +++   ++D+  + N  
Sbjct: 297 ITLVNEIFDGEDTKHIGKLANKITEEYE--AIVLFAVKNGDRVNLIFNSSKDM-KKVNMS 353

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           D+ + +  ++  G GGG    AQ GG N    + AI    + ++
Sbjct: 354 DILKDTITLI-DGRGGGNQFAAQGGGKNNGNTEVAIDYATNKIR 396


>gi|323142088|ref|ZP_08076936.1| threonine/alanine tRNA ligase second additional domain protein
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413475|gb|EFY04346.1| threonine/alanine tRNA ligase second additional domain protein
           [Phascolarctobacterium sp. YIT 12067]
          Length = 399

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 153/405 (37%), Gaps = 30/405 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           ++        K  V  DQT F+ E GGQL D G      +                H   
Sbjct: 18  KVTACTPKDGKYLVELDQTVFFPEGGGQLSDRGKLADAVVSHVSEKDG--------HIYH 69

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L     +   +D+  R      H   HLL +A   +     +  G  +  D +  
Sbjct: 70  ECDKPLEVGAEVEAVLDWSVRLDRMQQHLGEHLLSYACWKLFK--ANNIGFHMNEDDVFI 127

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRV 678
           D+   K +T  EL   E   N+II +N PV    M+  +A+          +K    +R+
Sbjct: 128 DL--DKELTDEELLQAELYTNEIIWENRPVHISYMDSIEAVKLKDKMRKFNSKLTGTLRI 185

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           VSVE  D        C GTH   TG +  + ++     + G  R+E + G RA      +
Sbjct: 186 VSVEDAD-----ICTCCGTHPPFTGMLGSVKVIRHEKHKGG-CRVEFVCGHRALLDADAK 239

Query: 739 DEKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-- 792
           +  L S+A+ L V    V   V +    +  +    +    K + +   E  +   +   
Sbjct: 240 NSTLLSVAASLSVKPEQVPAAVSKQKNDLLAQLDIAKSKLLKIEEEKLQETYAAAPVNAD 299

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            V  ++  +   D+K++K+ +  +   +++ + +L+ +  E + S  + +  D     + 
Sbjct: 300 GVKVLALPMEGHDAKDIKAFLPKVTA-LKNTLSLLLAVQPE-RISYAVALGVDTEG--DC 355

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + +L  +   GG GGG+   AQ G        + +  V   LK
Sbjct: 356 RSVIKLLNEA-FGGRGGGKSDCAQGGADYCADWQEKLQSVVEKLK 399


>gi|183011894|gb|ACC37876.1| alanyl-tRNA synthetase [Archisepsis priapus]
          Length = 112

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 10/111 (9%)

Query: 111 WDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWS 162
           W+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW 
Sbjct: 1   WEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQMWTDL-GLKPEHILPGSMKDNFWE 59

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 60  MGETGPCGPCSELHFDRI-GGRSVPELVNMDDPDVLEIWNLVFIQYNREAD 109


>gi|152975999|ref|YP_001375516.1| threonyl/alanyl tRNA synthetase SAD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024751|gb|ABS22521.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cytotoxicus NVH
           391-98]
          Length = 414

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/401 (18%), Positives = 152/401 (37%), Gaps = 29/401 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E        V   +T FY   GGQ  D G      +                       
Sbjct: 36  QEVDHEGNRYVTLTETAFYPTGGGQPHDIGTLNNVSVTNVEE---------INGEIRHFI 86

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                E+ ++  ID+  R      H+A H+L  A       ++   G  +  + +  D+ 
Sbjct: 87  SEELHEVEVIGKIDWNRRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGAETVTIDLD 144

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
               +++          N I+ +N P+  + MN E+A              + +RVV +E
Sbjct: 145 TPT-LSAETATEALRIANQIVLENHPIHIKWMNLEEAKQLPLRKEPLLY--ENIRVVIIE 201

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
             D        CGGTH   TGE+  ++I+     + GI R+  I G RA   +  Q + +
Sbjct: 202 NFDYN-----GCGGTHPKYTGEVGPIHIIGWERNKGGI-RLSFIAGWRAIKLMGHQQQII 255

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNF---M 797
           K ++  L   + ++  +V ++    ++ +      + +L V + +    + AD +    +
Sbjct: 256 KEVSKQLNSGENDIPRKVHQLITSQKESEKELQVMREKLLVIEANDLLQEAADTHVGMLI 315

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
           S   S    +E+  +   + ++ ++ I   V    E K   ++   + +    +  ++ +
Sbjct: 316 SKAFSNRSMQEIAKLSAIITEQNENTITYFV-TENEDKLQCILACGKSI--NISMNNMLK 372

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +   +  G GGG P  A+ GG      +Q +  +   LK+
Sbjct: 373 DALPTIE-GKGGGNPKSARGGGKALISGEQFLQQLVQALKE 412


>gi|126699779|ref|YP_001088676.1| putative RNA-binding protein [Clostridium difficile 630]
 gi|255101299|ref|ZP_05330276.1| putative RNA-binding protein [Clostridium difficile QCD-63q42]
 gi|115251216|emb|CAJ69047.1| putative alanyl-tRNA synthetase [Clostridium difficile]
          Length = 399

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 136/335 (40%), Gaps = 20/335 (5%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +  +ID+  R      H   H+L          + +  G  +  +    D+     + 
Sbjct: 78  HKVKCSIDWDRREDGMHQHFGQHVLSGCFFKTF--NANTTGFHLGNEYSTVDI--EGNLE 133

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +++ IE   N+II QN+ V T +  +++         L    ++ +RV+ +   D   
Sbjct: 134 EDKIREIELFANEIIRQNIQVETLLPTKKELKKIWLRRDLPNT-DEEIRVIKIGDLDTN- 191

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C G H  STGE+ ++ I      ++   RIE + G+RA   ++ +D  L  +  +
Sbjct: 192 ----ACCGVHPKSTGELRMIKIKKWEKHKS-STRIEFLAGKRAVDEVLKRDIYLTKICRY 246

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISE 803
           L  S+ + +  +  +  +  +  +   + +      Q+       +K+ +++ +  I  +
Sbjct: 247 LSCSEEDAINGIVNLNSKVEEALIKKRRLEEVVSTYQVKEMIEKANKVGNISVIKKIYDD 306

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            D K +  + + + +      I L+ +    K +++   +++L    N   L + +  ++
Sbjct: 307 EDLKYVNKIANKIAE--YENSIALLAVKFNDKINLVFACSKNL-KDINMGVLLKDAINLI 363

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             G GGG   +AQ GG N    +  +      ++K
Sbjct: 364 -DGKGGGSKVLAQGGGKNNGNLEATLDYAFMKIEK 397


>gi|229012797|ref|ZP_04169966.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides DSM 2048]
 gi|228748478|gb|EEL98334.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides DSM 2048]
          Length = 411

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 148/391 (37%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G  +        +    I                 +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNGIPVSNVEEVNGEIRHFII---------EQLHTEEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID++ R      H+A H+L  A       ++   G  +  + +  D+  +   T   
Sbjct: 93  EGKIDWERRFDHMQQHTAQHILSAAFWDHF--NIPTIGFHLGKETITIDLETANLSTET- 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A A            + +RVV +   D      
Sbjct: 150 VEKAAQIANQIVFENHPIRIKWMNLEEAKALPLRKE--PTMTENIRVVIIANYDYN---- 203

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R+   +    + L  ++  L  
Sbjct: 204 -GCGGTHPKHTGEVGPIQVLGWERNKGGI-RLTFIAGWRSLKLMGQHQQILTDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +        +L   + +       +I     +S   +    
Sbjct: 262 SETDIPAKVAQLLTSQKENEKAIQAMNEKLLFVEANELLQQSEEIHAGTLISRAFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEVAKLAAIITEQQEHAITYFV-IENEDKLQCILACGKAVTLDMNA--LLKDALPSIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSRDEFLNQLVSSLQ 408


>gi|330897296|gb|EGH28715.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 170

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 7/170 (4%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSC 788
            L   +++LK  A+ +K ++ N++ ++  + E  R L+    + + +           + 
Sbjct: 1   WLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQLEQLQAKAASAAGDDLSSAA 60

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
             +  V  ++  +   D K L +++D L+ K+   +I+L  +  E K  ++  VT+DL  
Sbjct: 61  LDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILLGSVH-EDKVVLVAGVTKDLTG 119

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  A DL + +A  +GG G GGRP MAQ GG +    D A+A    F+++
Sbjct: 120 QLKAGDLMKQAAAAVGGKG-GGRPDMAQGGGVDAGALDSALALAVPFVEQ 168


>gi|15488935|gb|AAH13593.1| AARS2 protein [Homo sapiens]
          Length = 551

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 122/548 (22%), Positives = 201/548 (36%), Gaps = 55/548 (10%)

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
              GLPLD+++ +L  +G+          A EE + RAR        G    +W  +   
Sbjct: 10  GDLGLPLDMVELMLEEKGVQLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVH-A 64

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQK 510
            G  Q  G                  +           + V  +  + G  V     GQ+
Sbjct: 65  LGELQRQG----VPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQR 120

Query: 511 VEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE GGQ  D G         +     + +  G F+ H  V    LR   
Sbjct: 121 CGLLLDRTNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGD 180

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + L +D   R      H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T 
Sbjct: 181 QVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTP 240

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------V 679
            +L+++E+ V + + Q+  V    +             L   Y D VRV          +
Sbjct: 241 EQLRAVENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHAL 300

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLM 736
               +     S  LC GTH+  TG +  L I+ +  +  G  R+ A+TG+   +AR    
Sbjct: 301 DPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQ 360

Query: 737 GQDEKLKSLASFLKVSQGNVVGRV-----------------------EEIWEEYRKLQLI 773
              +++K+    L +   +V   +                        E+    + LQ  
Sbjct: 361 SLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRR 420

Query: 774 H--AKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              A RKLQ+        ++    +    +   +S      L  V+  L ++  S  ++L
Sbjct: 421 ANTAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLL 480

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +      K      V +  +  F A   A      +GG   G R  +AQ  G   +  + 
Sbjct: 481 LSPQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEA 538

Query: 888 AIAGVASF 895
           A++   ++
Sbjct: 539 ALSIAQTY 546


>gi|47567906|ref|ZP_00238613.1| alanyl-tRNA synthetase-related protein [Bacillus cereus G9241]
 gi|47555384|gb|EAL13728.1| alanyl-tRNA synthetase-related protein [Bacillus cereus G9241]
          Length = 411

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 152/396 (38%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG   G  +       ++    I             
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPHDTGTLNGITVFGVEEVNEEIRHFIT---------EQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  +       ++   G  +  + +  D+     
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSASFWDHF--NIPTIGFHLGRETVTIDLETENL 145

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N+I+ +N P+    M+ E+A              + +RVV +E  D 
Sbjct: 146 HTET-VEKAVQIANNIVFENHPIHIEWMDLEEAKTLPLRKE--PNMTENIRVVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSESDIPAKVAQLLTSQKENEKTIQTMNEKLLYAEANELLQQPAKIHASILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   + I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEISKLSAIITEQQEHAITYFI-IENEDKLQCILACGKTVTLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 AIE-GKGGGNKKSARGGGKAIMTGDEFLNQLISSLQ 408


>gi|187932858|ref|YP_001885945.1| dhha1 domain protein [Clostridium botulinum B str. Eklund 17B]
 gi|187721011|gb|ACD22232.1| dhha1 domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 399

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 169/403 (41%), Gaps = 30/403 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E V+E   G +  +V ++T F+   GGQ  D G        +++ +V +K   I+     
Sbjct: 19  EQVKEV--GNEFHIVLNKTAFFPGGGGQRHDLGKID----EIEVLNVYEKDNLIYHVLDR 72

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
               I      +  +ID+  R     +H A H+L      +   +       +       
Sbjct: 73  KPSRIHN----VKCSIDWLRRLDGMNHHLAQHVLSSCFFRLFNINTIA----VHHGNEFS 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            +  S  +T  +++S E   N+II ++L V      + +  +      L    N+++R+V
Sbjct: 125 TIDFSSILTEEQVRSCEKYANNIIEKSLDVEFLTPTKRELKSMKLRRDLPDT-NEQIRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            ++  D        C G H  ST ++ L+ I      + G  RIE ITG +A +  + +D
Sbjct: 184 KIDDLD-----LNACCGVHPKSTLDLRLIKIKKYEKHKKGS-RIEFITGSKAVTDSLEKD 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADV 794
               S+  +L  ++   +  +E +  E + +   +    ++L+  ++        +I ++
Sbjct: 238 LFANSMCKYLNCNEKEALNGIENLNLELKNVLNENKSMSIELSNYEIKEIIEKSAQINNI 297

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
           N + ++ +    K + +++  + +K     I L+ +  + K +++   +++ +   N  +
Sbjct: 298 NIIKYVYNNKTLKFVNTIVSQITEKDNK--IALIALVNDDKINLIFSCSKN-IKNVNMNE 354

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L + +  VL  G GGG   +AQ  G N    +  +    + LK
Sbjct: 355 LLKDAI-VLIDGRGGGNQTLAQGAGKNLLNLENTLDYAFNKLK 396


>gi|166031100|ref|ZP_02233929.1| hypothetical protein DORFOR_00785 [Dorea formicigenerans ATCC
           27755]
 gi|166028947|gb|EDR47704.1| hypothetical protein DORFOR_00785 [Dorea formicigenerans ATCC
           27755]
          Length = 380

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 89/398 (22%), Positives = 157/398 (39%), Gaps = 39/398 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + +++     G+  +VV D+T F+ E GGQ  DTG   G      +  +  + +   ++H
Sbjct: 16  EAQVISCEPEGEGYKVVLDKTVFFPEGGGQYADTGILGG------VHVLDAQEKDGIIYH 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                G L     +   ID++ R +    HS  H++   +        +  G  +  D  
Sbjct: 70  --YTDGALTPGEIVKGEIDWEKRFESMQQHSGEHIISGIVH--GRFGYNNVGFHLGADYC 125

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D     PIT  +LK IE+  N I+ +NL     I+                +   +VR
Sbjct: 126 TMDF--DGPITKEQLKEIEEEANRIVYKNL--NIEILYPTKEELKDLTYRSKIEIEGQVR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V++   D        C   HV  TGEI  + +V   S + G  RI  ++G RA +    
Sbjct: 182 IVNIPGVD-----ICACCAPHVDRTGEIGNIKLVDMVSYKGG-ERITMLSGSRALTDHQQ 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           ++E +K +++ L      V   VE++ EE   L+   +  K +L        +I     +
Sbjct: 236 KEESVKKISALLCAKDTEVAEAVEKLKEEQLDLKNQVSALKQKLLAYQ--AKEIDVTPEL 293

Query: 798 SHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
             +   E+   E + +M+ L ++      +  G  +E    V+   +ED           
Sbjct: 294 VKVFDSELSGNEPRELMNILLERGAKICAIFAGNDEEGYRYVIGSHSED----------V 343

Query: 857 RLSAKVLG---GGGGGGRPHMAQSG--GPNGNKADQAI 889
           R+ +K L     G GGG+P M Q    G       + +
Sbjct: 344 RVISKKLNEAFQGRGGGKPQMVQGSLKGT-AKNISEIL 380


>gi|255024324|ref|ZP_05296310.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-208]
          Length = 149

 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 75/148 (50%), Gaps = 8/148 (5%)

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKS 811
             +VE++  + R+++  +     +L     +       +I  V  ++  ++  D  +L+ 
Sbjct: 1   PQKVEQLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 60

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            +D  + K   GI++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGG
Sbjct: 61  FVDNWKDKKIGGILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGG 118

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           RP MAQ+GG N  +   A+  V++++K+
Sbjct: 119 RPDMAQAGGKNPAELGAALDYVSTWVKE 146


>gi|323489249|ref|ZP_08094481.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323397136|gb|EGA89950.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 393

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 80/381 (20%), Positives = 138/381 (36%), Gaps = 25/381 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +++          VV DQ+ FY E GGQ  DTG         +I   +     +      
Sbjct: 18  DVINSGKDDHGHYVVLDQSCFYPEGGGQPADTG---------EIGPAKVWDVQLIDGEIR 68

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                   +   V  +D Q R      H+  HLL           +      +  + +  
Sbjct: 69  HYTDRELEKERFVAQLDEQRRWDHMQQHAGQHLLSALFEDTY--GLKTQSFHLGKERVTI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+      T  +++ IE   N++I Q LP+ TR +  E A             +  +R+V
Sbjct: 127 DLDLDTA-TKEQIQVIEKKANELIGQALPISTRWVTSEKADTLKLRKP--PVVDGEIRLV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +E  D        CGGTH  +T EI LL I+S    + G+ R+  + G RA  +     
Sbjct: 184 EIEGID-----LNACGGTHPKNTAEIGLLKIISTEKSKGGM-RVYFLCGDRALQYFNFLS 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           E    L   L      +   VE +  +   +       + QL   +     + + + +  
Sbjct: 238 ETTDQLVVKLNAPAAELTQAVETLLADKATMSKTIKSLQEQLLNLEAKTI-VPENHLIQE 296

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           +      KEL+ +   +  +  + I + +  ++      +    ED L   +  ++ +  
Sbjct: 297 VFENRSIKELQQLARLVISEHPTAIALFISSTEGD-MRFVCAKGEDALG--DMREVLKQL 353

Query: 860 AKVLGGGGGGGRPHMAQSGGP 880
             VL  G GGG    AQ GG 
Sbjct: 354 L-VLTDGKGGGNVQFAQGGGK 373


>gi|297530207|ref|YP_003671482.1| threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. C56-T3]
 gi|297253459|gb|ADI26905.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. C56-T3]
          Length = 389

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 148/388 (38%), Gaps = 27/388 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G+   V   +T FY E GGQ  D G   G  +     +  +    +  H  +       
Sbjct: 25  DGETYVVTLAETAFYPEGGGQPSDAGTIAGLPVLDVFDENGEVYHRLPAHPGM------- 77

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   +D + RR  +  HS  HLL               G  +  D +  D+T    
Sbjct: 78  --GVVSCVLDMKRRRDHTQQHSGQHLLSAVFIE--QLGAETVGFHLGRDVVTIDITVD-A 132

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T +E+ ++E+  N++I  NLPV T  +  E+A                VRVV ++  D 
Sbjct: 133 LTESEMLAVENRANELIYANLPVDTYWVTPEEAERMPFRKR--PDVQGNVRVVEMKGID- 189

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                + C GTHV  TGEI ++ ++       G+ R+  + G RA +        +++ A
Sbjct: 190 ----LSACCGTHVKRTGEIGVIKLLKAER-HRGMTRLSFLCGGRALADYQQTHRVVQAAA 244

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
                S+  ++  + +  +E ++L+    + +  +   +           +     +  +
Sbjct: 245 GRFGTSRNQLLEVIAKWEQEKKELEKRLRQYEEIVFAVEAERAAAESGRAVIGRYDQYGA 304

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           KEL+ +   +  +       L+  + + +A +     +      +A +  +     L GG
Sbjct: 305 KELQMIARLIADRYGKT--ALLASTPDWRAVIA----KSPSSLLHAGNWLKEQ-TALFGG 357

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            GGG     Q+  P+     Q ++ V +
Sbjct: 358 KGGGNERQGQAAFPSLEALSQFLSRVEA 385


>gi|168204578|ref|ZP_02630583.1| DHHA1 domain protein [Clostridium perfringens E str. JGS1987]
 gi|170663792|gb|EDT16475.1| DHHA1 domain protein [Clostridium perfringens E str. JGS1987]
          Length = 400

 Score =  151 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 163/404 (40%), Gaps = 28/404 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++   ++    
Sbjct: 16  GEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEEEGKVYHILE 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                  +   +L   +D++ R      H   HLL      + G++              
Sbjct: 72  K----EPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCSFHL----GKEI 123

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
             V     +    ++  E   N +I +NL V +   ++++         L    ++ +R+
Sbjct: 124 STVDIVGFLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALPKT-DEEIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +   D        C G H  +T ++ ++ I           RIE + G RA S    +
Sbjct: 183 VEIVGLD-----LNACCGVHPRNTRDLQVIKIRRWE-KHKNATRIEYVAGNRAVSDFFTK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD 793
           DE L  +   LK  +G+ +  V+ + E  + L   + K K ++    +        +I  
Sbjct: 237 DEILGEICKLLKSGEGDTLNAVKNLLENNKNLVDENRKVKAEIGDYKIKEMLNKSERIGS 296

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           +  ++ I    D+K +  + + + ++ +   I+L  +    + +++   ++D+  + N  
Sbjct: 297 ITLVNEIFDGEDTKHIGKLANKITEEYE--AIVLFAVKNGDRVNLIFNSSKDM-KKVNMS 353

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           D+ + +  ++  G GGG    AQ  G N    + AI    + ++
Sbjct: 354 DILKDTITLI-DGRGGGNQFAAQGRGKNNGNTEVAIDYATNKIR 396


>gi|225568685|ref|ZP_03777710.1| hypothetical protein CLOHYLEM_04763 [Clostridium hylemonae DSM
           15053]
 gi|225162184|gb|EEG74803.1| hypothetical protein CLOHYLEM_04763 [Clostridium hylemonae DSM
           15053]
          Length = 385

 Score =  151 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 154/394 (39%), Gaps = 40/394 (10%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G++ ++V D+T F+ E GGQ  DTG   G    +++TD  +K   IF        G L  
Sbjct: 26  GEQYKIVLDETAFFPEGGGQYADTGWIGG----VRVTDAHEKEGVIFHTAG----GPLVP 77

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +  TID+  R +    HS  H++   +           G  +  D    D     PI
Sbjct: 78  GTKVKGTIDWDERFEKMQQHSGEHIVSGLIHQ--KFGYDNVGFHLGSDYCTLDFN--GPI 133

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  EL  IE   N+ + +NL +     ++E+       + +      +VR+V+V   D  
Sbjct: 134 TREELCGIETMANEAVFRNLDIQVSYPSKEELEHIDYRSKIE--IEGQVRIVTVPGYD-- 189

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 C   H+  TGEI L+ +    + + G  RI  + G RA      ++  +K++++
Sbjct: 190 ---VCACCAPHMDKTGEIGLIKLTDMVNYKGG-ERISMLCGFRALRDYRQKECNVKAISA 245

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
            L   +      V  + EE  + +   A  + ++     +          +    E+   
Sbjct: 246 LLCAREEETAEAVGHLKEEQVRQKGKIASLQQKMLTYKAAEISTDGA-VAAVFDPELSGN 304

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG-- 865
             + +M+ L  +      +L G  +E    V+   TED           R   + L    
Sbjct: 305 GPRELMNLLLDRGARVCAVLAGTDEEGYRYVIGSRTED----------VRQLCRELNDRF 354

Query: 866 -GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            G GGG+P M Q  G    KA +    +  FL++
Sbjct: 355 SGKGGGKPEMVQ--GSLVGKASE----IRRFLEE 382


>gi|229168340|ref|ZP_04296065.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH621]
 gi|228615166|gb|EEK72266.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH621]
          Length = 411

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 152/391 (38%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G  +        +    I     + E         +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNGIPVINVEEVDGEIRHFIVEQLHMEE---------V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+  R      H+A H+L  A       ++   G  +  + +  D+  +   T   
Sbjct: 93  EGKIDWDRRFDHMQQHTAQHILSAAFWDHF--NIPTIGFHLGKETITIDLETANLSTET- 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A A            + +RVV +   D      
Sbjct: 150 VEKAAQIANQIVFENHPIRIKWMNLEEAKALPLRKE--PTMTENIRVVIIANYDYN---- 203

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + I+     + GI R+  I G R+   +  Q + +K ++  L  
Sbjct: 204 -GCGGTHPKHTGEVGPIQILGWERNKGGI-RLTFIAGWRSLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDS 806
           S  ++  +V ++    ++ +        +L   + +       +I     +S   +    
Sbjct: 262 SDTDIPAKVAQLLTSQKENEKAVQAMNEKLLFVEANELLQQSEEIHAGTLISRAFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E+K   ++   + +    +   L + +   + G 
Sbjct: 322 QEVAKLAAIITEQQEHAITYFV-IENEEKLQCILACGKAVT--LDMNTLLKDALPSIEGK 378

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGG + + A+ GG      D+ +  + S L+
Sbjct: 379 GGGNKKN-ARGGGKAIMSGDEFLDQLVSSLQ 408


>gi|307692628|ref|ZP_07634865.1| Alanyl-tRNA synthetase, class IIc-like protein [Ruminococcaceae
           bacterium D16]
          Length = 382

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 141/377 (37%), Gaps = 30/377 (7%)

Query: 502 VEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           VE    G+K   ++ DQT FY E GGQ  DTG   G    + + +V ++   +    A  
Sbjct: 18  VESCTQGKKGWDILLDQTAFYPEGGGQPYDTGTLGG----VPVLEVHQREGWVVHTCA-- 71

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L     +   ID+  R  L  +HS  H++     ++        G  +  D +  D
Sbjct: 72  --APLEAGSQVEGQIDWPRRFDLMQHHSGEHIVSGIAHSLY--GCDNVGFHMGSDVITID 127

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +     +T  ++  +E   N  I ++ P+       ++       +        +VR+VS
Sbjct: 128 LNV--ELTPEQVAQLEARANQYIWEDHPIAVTYPTPQELEVLEYRSK--KALTGQVRIVS 183

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
               D     +  C GTHVSS+G++ L+ ++S    R G+ RIE + G+RA  +L    E
Sbjct: 184 FPGAD-----TCACCGTHVSSSGQVGLVKLLSCQKFRDGV-RIELVCGKRALDYLSQVWE 237

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           +   +++ L        G V  + +E   L+       ++         +      +   
Sbjct: 238 QNHQISNLLSAKTMQTSGAVRRLLDENAALKSRI--LTMEERQFAALAQRYTGQGDVVVF 295

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
              +    L+ +  A+Q           G         +     DL        LA+   
Sbjct: 296 EEGLSPDSLRRLCGAVQAACGGRCACFSGEDGAGYQYAVGQPGGDLRP------LAKALN 349

Query: 861 KVLGGGGGGGRPHMAQS 877
           + L  G GGG+P   Q 
Sbjct: 350 QAL-QGRGGGKPDFIQG 365


>gi|326389883|ref|ZP_08211447.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994151|gb|EGD52579.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 400

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 83/404 (20%), Positives = 158/404 (39%), Gaps = 31/404 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
              IV++     K E+V D+T FY E GGQ  DTG   G  +     +            
Sbjct: 16  DANIVDKRKINNKWELVLDKTYFYPEGGGQPSDTGLIDGIKVYKIYEENDT--------- 66

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                      + +   +D++ R      H+  HLL   L    G+H            +
Sbjct: 67  VYHLADKCPKGIKVHCQVDWERRFDHMQQHTGQHLLSAVLEKKYGAHTQSFSIGDKSSHI 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
                        E   +E  VN  + +N+PV T   + E             + ++ +R
Sbjct: 127 TITKDTFN---EEEAFEVEKEVNSFVYKNIPVKTYFADEEMLKKLPLRK--QPQVSENIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  D      + CGGTHV +TGEI ++ I        GI R+E + G RA      
Sbjct: 182 IVEIEGID-----YSPCGGTHVMTTGEIGIVKIKKWEKTNKGI-RLEFVAGFRALYDYHI 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792
           ++  + +L   L   + N++  V ++ EE ++++      K  + +E+      S     
Sbjct: 236 KNNYVNALCHLLSEQEENILEHVLKLLEENKEVKKEVNILKENILLEESRNLIKSSELHG 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            ++ +  +     ++ELK +   +    +   I ++G  + +   +++  + D+    N 
Sbjct: 296 GIHIVYKLYENRTTEELKILAKYIVSNDK--CIAILGNKRGETGDLVVSRSGDVDIVVNG 353

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               +   + +  G GGG  +M Q GG + ++ + A+    S +
Sbjct: 354 --FFKEVLR-VFDGKGGGNAYMCQ-GGVSLDRLELAMDKALSIV 393


>gi|284048719|ref|YP_003399058.1| Threonyl/alanyl tRNA synthetase SAD [Acidaminococcus fermentans DSM
           20731]
 gi|283952940|gb|ADB47743.1| Threonyl/alanyl tRNA synthetase SAD [Acidaminococcus fermentans DSM
           20731]
          Length = 397

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 144/398 (36%), Gaps = 35/398 (8%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              EV+ D+T  + E GGQL D G      +     D  +                +   
Sbjct: 27  DHYEVILDRTVLFPEGGGQLSDKGWLDMVPVYYASEDGPEVR--------HWTHAPVEPG 78

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++ + +D+  R      H   H+L +A         +  G  +  D +  D+   + I 
Sbjct: 79  KTVTVKLDWPVRLDRMQQHCGEHILSYAFWKT--CGANNVGFHMNEDSVFIDL--DQEID 134

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             + K  E   N+ +  N PV    ++  +            K    VR+V ++  D   
Sbjct: 135 EEKAKKAEWMANECLWANEPVSLHYVDASELGKYPLRKK-NEKLRGTVRLVDIKNGD--- 190

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C GTH   TG +  + I+     + G  RIE + G RA   +  ++  L+  ++F
Sbjct: 191 --ICTCCGTHPPYTGMVGSIQIIRFVRHKGGS-RIEFLCGNRALKAMHERNRILEETSNF 247

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDLSCHK---IADVNFMSHIIS 802
           L V   +V+  VE++ +E   L+       +  ++  + DL             +   + 
Sbjct: 248 LSVKAEDVLPAVEKLHQEILDLRGKVREKTQELIRFQLPDLLAQAPVLADGTRLLVLTLE 307

Query: 803 E--VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
               D K    +  A     + G++  V      +      ++E       A       A
Sbjct: 308 GTAADGKSAMKLASA-----EPGVLAAVFTKDGDRIMYQFALSEGAEGDCKA---CCTKA 359

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             L GG GGGRP  AQ GG  G   +Q +  + + +KK
Sbjct: 360 NALFGGRGGGRPQSAQGGGTAGADWEQKVRELVAEIKK 397


>gi|229080827|ref|ZP_04213345.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock4-2]
 gi|228702561|gb|EEL55029.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock4-2]
          Length = 411

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 148/396 (37%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 37  KNGNLYVVLNETAFYPTGGGQPYDTGT---------LNDINVINVEEINREIRHYIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A       ++   G  +  + +  D+     
Sbjct: 88  HTEDVEGKINWERRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGKETVTIDLETENL 145

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+    MN E+A              + +RVV +E  D 
Sbjct: 146 HTET-VEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRKE--PNMTENIRVVIIENYDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S   
Sbjct: 257 KQLNSSETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTEIHAGLLISKAF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           ++   +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TDRSMQEIAKISAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 AIE-GKGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|229018813|ref|ZP_04175660.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1273]
 gi|229025054|ref|ZP_04181482.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1272]
 gi|228736260|gb|EEL86827.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1272]
 gi|228742434|gb|EEL92587.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1273]
          Length = 411

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 152/397 (38%), Gaps = 29/397 (7%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            +   + VV ++T FY   GGQ  DTG   G  +        +    I            
Sbjct: 36  NAEGNLYVVLNETAFYPTGGGQPNDTGTLNGIPVSNVEEVDGEIRHFIV---------EQ 86

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   ID++ R      H+A H+L  A       ++   G  +  + +  D+  ++
Sbjct: 87  LHTEEVEGKIDWERRFDHMQQHTAQHILSAAFWDHF--NIPTIGFHLGKETITIDL-ETE 143

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            + +  ++      N I+ +N P+    MN E+A              + +RVV +E  D
Sbjct: 144 NLHAETVEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRKE--PTMTENIRVVIIENFD 201

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K +
Sbjct: 202 YN-----GCGGTHPKHTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDV 255

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHI 800
           +  L  S+ ++  +V ++    ++ +        +L   + +       KI     +S +
Sbjct: 256 SKQLNSSEADIPAKVSQLLTSQKENEKALQTMNEKLLFAEANELLQQPAKIHGGILISKV 315

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  + K   ++   + +    +   L + + 
Sbjct: 316 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVT--LDMNTLLKDAL 372

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 373 PAIE-GKGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 408


>gi|228940707|ref|ZP_04103270.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973626|ref|ZP_04134208.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980184|ref|ZP_04140498.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis Bt407]
 gi|228779542|gb|EEM27795.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis Bt407]
 gi|228786087|gb|EEM34084.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818951|gb|EEM65013.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 411

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 144/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEDVEGKINWERRFDHMQQHAAQHILSAAFWDHFNMPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+  + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAIQIANKIVFENHPIRIQWMNLEEAKTLPLRKE--PTMTENIRVVIIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +   +  +       +S + 
Sbjct: 257 KQLNSSETDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIHADILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|326941340|gb|AEA17236.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 400

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 144/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 26  KDGNLYVVLNETAFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQL 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 77  HTEDVEGKINWERRFDHMQQHAAQHILSAAFWDHFNMPTIGFHLGKETVTIDLETENLHA 136

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+  + MN E+A              + +RVV +E  D 
Sbjct: 137 ET---VEKAIQIANKIVFENHPIRIQWMNLEEAKTLPLRKE--PTMTENIRVVIIENFDY 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 192 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +   +  +       +S + 
Sbjct: 246 KQLNSSETDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIHADILISKVF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 306 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 363 TIE-GKGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 397


>gi|229111045|ref|ZP_04240604.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock1-15]
 gi|228672408|gb|EEL27693.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock1-15]
          Length = 411

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 147/396 (37%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G  + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 37  KGGNLYVVLNETAFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEDVEGKINWERRFDHMQQHAAQHILSAAFWDHFNMPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+  + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAIQIANKIVFENHPIRIQWMNLEEAKTLPLRKE--PTMTENIRVVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K+++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKNVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S + 
Sbjct: 257 KQLNSSETDIPTKVAQLLTSQKENEKAIQTMNEKLLFAEANELLQHPTEIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|294992425|gb|ADF57351.1| alanyl-tRNA synthetase [Roseburia inulinivorans DSM 16841]
          Length = 190

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 76/178 (42%), Positives = 111/178 (62%), Gaps = 2/178 (1%)

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                 + +R++E+WN VF QFE   K     L + +IDTGMGLER+A V+Q+  + +DI
Sbjct: 7   DCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELSQKNIDTGMGLERLAVVMQDVDSVFDI 66

Query: 247 DLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  K +     +++G KY  +  + V+ R+I DH+RSS+F+I+DGI+P+NEGRGYVLRRI
Sbjct: 67  DTMKAIRDRVCELSGKKYEVDAMDDVSIRLITDHIRSSTFMISDGIMPSNEGRGYVLRRI 126

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           +RRA  + R+LG     M  L   +  E    YPEL + K  I + L  E+E+F KT+
Sbjct: 127 IRRAARHGRMLGIDGIFMAELAKTVINESKDGYPELEEKKDFILKVLAQEEEKFAKTI 184


>gi|228953891|ref|ZP_04115930.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805859|gb|EEM52439.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 411

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 149/396 (37%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 37  KNGNLYVVLNETAFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A       ++   G  +  + +  D+     
Sbjct: 88  HTEDVEGKINWERRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGKETVTIDLETENL 145

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+    MN E+A              + +RVV +E  D 
Sbjct: 146 HTET-VEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRKE--PNITENIRVVIIENYDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+ L+ ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGLIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S   
Sbjct: 257 KQLNSSETDIPAKVAQLLTSQKENEKTTQTMNEKLLFAEANELLQQPTEIHAGLLISKAF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           ++   +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TDRSMQEIAKISAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|226324688|ref|ZP_03800206.1| hypothetical protein COPCOM_02474 [Coprococcus comes ATCC 27758]
 gi|225207136|gb|EEG89490.1| hypothetical protein COPCOM_02474 [Coprococcus comes ATCC 27758]
          Length = 382

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 164/396 (41%), Gaps = 36/396 (9%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+V         E V  +T F+ E GGQ  DTG   G    +++ DVQ+K E IF +   
Sbjct: 18  EVVSCRPCDNGYEAVLSRTAFFPEGGGQAADTGVIDG----IRVYDVQEKGEQIFHYL-- 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
              G L    ++   ID+  R      HS  H++   +           G  +  +    
Sbjct: 72  --EGELEEGKTVTGQIDWDKRFSRMQQHSGEHIVSGIVH--ARFGYDNVGFHLNDELCTL 127

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D++   P+T  EL+ +E+  N+ +  N+PV     ++E        + +    + +VR+V
Sbjct: 128 DLS--GPLTKEELREVENAANEAVFANVPVQISYPSKEKLKTLDYRSKIE--IDGQVRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           ++   D        C   HV  TGEI L+ +V   + + GI RI  + G+RA      ++
Sbjct: 184 TIPGYD-----VCACCAPHVYFTGEIGLIKLVQSQNYKGGI-RITMLCGRRALKDYQQKE 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           E +K++   L   +  +   VE + EE  +L+   A+ + Q+       +          
Sbjct: 238 ESVKAIMGSLSAKEELIAEAVERVKEECTQLKSELAETRYQILEAQAEKNSGGTEKRSVF 297

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
             S++   E + +M+ + KK      +  G  +     V+   TED           R  
Sbjct: 298 FDSKLSGNEPRELMNLVLKKGTEVCAVFAGNEESGYRYVIGSETED----------VRPY 347

Query: 860 AKVL---GGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +K+L     G GGG+P M Q      N +++AI  V
Sbjct: 348 SKILKEQFDGRGGGKPVMVQGS---VNGSEEAIRKV 380


>gi|255526550|ref|ZP_05393458.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
 gi|296187528|ref|ZP_06855923.1| DHHA1 domain protein [Clostridium carboxidivorans P7]
 gi|255509735|gb|EET86067.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
 gi|296048050|gb|EFG87489.1| DHHA1 domain protein [Clostridium carboxidivorans P7]
          Length = 391

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 156/402 (38%), Gaps = 29/402 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +  +++      KV VV D+TPFY E GGQ  DTG   G  +                  
Sbjct: 16  EANVLDIIEEDGKVLVVLDKTPFYPEGGGQPSDTGTIDGIKVSYVSEKG---------EI 66

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                        +  +ID++ R      HS  HLL  A+  +     +  G  +  + +
Sbjct: 67  IYHHMDKAPENKKVKCSIDFERRFDHMQQHSGEHLLSGAIYKLY--GGNNKGFHLGEEYV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+    P T   +K +ED VN+ I  N    T I+ +++     A   +         
Sbjct: 125 TVDIDID-PFTEDMVKKVEDEVNEYIYANRSFDTYIVTKDEVDKVPARKKINVD------ 177

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
              +   +        C GTHV +T E+ ++ I+       G+ RI    G+RA      
Sbjct: 178 -EDIRIVEAKDMDCCPCCGTHVKTTSEVGIVKILKAERY-KGMTRIYIKCGKRAFKDFQV 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-VEDLSCHKIADVNF 796
           + + + SL   L V +  ++ RV + +EE   L+   ++ K  +  +E  S  K A    
Sbjct: 236 KHDIITSLNKVLSVDENGILDRVNKQFEEIESLKRESSRSKSTIAGIEAESIIKNAKSKL 295

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +S    + + ++++ +   L+ K   G I++    ++KK   L     +     +   L 
Sbjct: 296 ISIQFEDKNFEDIQLIGSILENK---GYIVIFASLEDKKILFL----NNTDIDISCGKLF 348

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +   +    G GGG+   AQ    N     +    +++ +++
Sbjct: 349 KEHIREFN-GKGGGKDKRAQGTFDNKEDLTKFCELLSATVRE 389


>gi|229134426|ref|ZP_04263239.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST196]
 gi|228649047|gb|EEL05069.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST196]
          Length = 411

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 151/391 (38%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G  +        +    I                 +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNGIPVINVEEVNGEIRHFII---------EQLHTEEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID++ R      H+A H+L  A       ++   G  +  + +  D+  +   T   
Sbjct: 93  EGKIDWERRFDHMQQHTAQHILSAAFWDHF--NIPTIGFHLGKETITIDLETANLSTET- 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A A            + +RVV +E  D      
Sbjct: 150 VEKAAQIANQIVFENHPIRIKWMNLEEAKALPLRKE--PTMTENIRVVIIENYDYN---- 203

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R+   +  Q + +K ++  L  
Sbjct: 204 -GCGGTHPKHTGEVGPIQVLGWERNKGGI-RLTFIAGWRSLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDS 806
           S  ++  +V ++    ++ +        +L   + +       +I     +S   +    
Sbjct: 262 SDTDIPAKVAQLLTSQKENEKAVQAMNEKLLFVEANELLQQPAEIYAGTLISRAFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    +   L + +   + G 
Sbjct: 322 QEVAKLAAIITEQQEHAITYFV-IENEDKLQCILACGKAVT--LDMNTLLKDALPSIEGK 378

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGG + + A+ GG      D+ +  + S L+
Sbjct: 379 GGGNKKN-ARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|327441832|dbj|BAK18197.1| predicted metal-dependent hydrolase [Solibacillus silvestris
           StLB046]
          Length = 391

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 156/398 (39%), Gaps = 24/398 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           ++V+         +V + T FY   GGQ  DTG  I D   + +  + ++          
Sbjct: 18  QVVKTGKDETGNFIVLNNTAFYPTGGGQPHDTG-WINDVEIIDVEKINEEIRHYTAADVS 76

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
              G       +   + +  R      H+  H+L  A   +    ++     +  + +  
Sbjct: 77  NISGE------ISGKLHWSRRFDHMQQHAGQHILSAAF--VELFDMATVSFHLGTELVTI 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+     ++  +L ++E   N+II +N P+ T+ + +E+         +    ++ +R+V
Sbjct: 129 DLNV-GEVSEDQLAAVEKRANEIILENRPIETKWVTKEELAQYNLRKDVK--VDEDIRLV 185

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +   D        CGGTH +STG++ L+ I++   ++  I R+  + G R    L  + 
Sbjct: 186 IIPDYDYN-----GCGGTHPTSTGQVGLIKILATEKMKKQI-RVHFVCGNRVLQQLAMRK 239

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           + L  +A  L  S+      + +  +  ++ +      + Q N+ +    ++A     + 
Sbjct: 240 QVLSDVARQLSASEEEAANTLRKFTKAAKQTEKSLT--EAQDNLLEFEAKELAKETVAAA 297

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
                  + L+ +   + ++    I +LV  + E K   +     +        D++  +
Sbjct: 298 TFENRSIQSLQKLARFITQQNGEAIALLVA-NNEDKLQFVAARGSEQTKSMK--DISAAA 354

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             ++  G GGG   + Q GG     A+  I  +   ++
Sbjct: 355 LPLIN-GKGGGNDALVQGGGEKAITAEALIKAMKEAVQ 391


>gi|159901144|ref|YP_001547391.1| threonyl/alanyl tRNA synthetase SAD [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894183|gb|ABX07263.1| Threonyl/alanyl tRNA synthetase SAD [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 387

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 148/402 (36%), Gaps = 35/402 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   + V+  +  V  D++ FY E GGQ  D G   G  +     D              
Sbjct: 15  EWSAQIVARDQQRVALDRSAFYPEGGGQPADHGWINGVAVVDVQADD--------HDLVW 66

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     S+   +D+Q R      H   HLL  A   +        G  ++ + +  
Sbjct: 67  HTLAAPIDSDSVECRLDWQRRFDHMQQHHGQHLLSAAFDQLFNWRT--VGFHLSSEYVTI 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+   +  +  +L   E   N +I QNLP++ R ++ E+                 +RVV
Sbjct: 125 DLATGEADSE-QLGEAETLANQVIWQNLPILARFVSAEELATLALRKA--PSVTGAIRVV 181

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           S      G    + CGGTH ++TG +  ++I         + RIE + G RA   L  ++
Sbjct: 182 S-----AGDFDHSACGGTHPNATGAVGQIHIRRSEKRGESV-RIEFVCGGRALQDLRWKN 235

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADV 794
             L  +A+   V+Q      +E + E+ ++++    + + QL   +         +I  +
Sbjct: 236 AALGRIAAGFSVAQPQAEQAIERLREQEQQVRKQFQQAEQQLLEFEAKALVEQAQRIGQL 295

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             ++ +    + + ++ + + + +      + L G++   K  ++           +   
Sbjct: 296 KVVAQVWLR-EPQTVRQLANLVAQAGG---VALFGVAA-SKPQLIFAG-----QGLDCGA 345

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + R       GG GGG    AQ G    N    A+      +
Sbjct: 346 ILRQVVAA-FGGKGGGSVQQAQGGIAEANDLAAALELAKQQI 386


>gi|228966520|ref|ZP_04127573.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793242|gb|EEM40792.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 408

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 142/397 (35%), Gaps = 36/397 (9%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG   G  +        +    I             
Sbjct: 34  KDGNLYVVSNETAFYPTGGGQPHDTGTLNGIAVLDVEEVNDEIRHFIT---------EQL 84

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 85  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDHFNIPTIGFHLGKETVTIDLETENLHA 144

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T  E        N I+ +N P+ T  MN E+A              + +RVV +E  D 
Sbjct: 145 ETVEE---AVQIANKIVFENHPIRTLWMNLEEAKTLPLRKE--PTMTENIRVVIIENFDY 199

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 200 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIIKDVS 253

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S + 
Sbjct: 254 KQLNSSEIDIPTKVAQLLTSQKENEKAIQTMNEKLLYAEANELLQQPAEIHASILISQVF 313

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 314 TNRSMQEIAKLSAIITEQQEHAITYFV-IQNEDKLQCILACGKSITLDMNA--LLKEALP 370

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +  G GGG    A+ GG        A+     FL +
Sbjct: 371 TI-DGKGGGNKKSARGGGK-------AVMTGEEFLNQ 399


>gi|229071122|ref|ZP_04204348.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus F65185]
 gi|228712062|gb|EEL64011.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus F65185]
          Length = 411

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 149/396 (37%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG   G  +       ++    I             
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPHDTGTLNGIAVLDVEEVDEEIRHFI---------AEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A       ++   G  +  + +  D+     
Sbjct: 88  HTEDVEGKINWERRFDHMQQHAAQHILSAAFWD--YFNIPTIGFHLGKETVTIDLETENL 145

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+    MN E+A              + +RV  +E  D 
Sbjct: 146 HTET-VEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRKE--PNMTENIRVFIIENYDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKCTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S   
Sbjct: 257 KQLNSSETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTEIHAGLLISKAF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           ++   +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TDRSMQEIAKISAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 AIE-GKGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|302557376|ref|ZP_07309718.1| alanine-tRNA ligase [Streptomyces griseoflavus Tu4000]
 gi|302474994|gb|EFL38087.1| alanine-tRNA ligase [Streptomyces griseoflavus Tu4000]
          Length = 132

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF + GH  +PS+ L    DPTL+F N+GMVPFK   TG+    +    +
Sbjct: 49  TAEIRRRFLDFFAERGHTAVPSAPL-CSPDPTLLFVNAGMVPFKPYLTGEASTPWPRAAS 107

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTF 89
           VQKCVR      D++ VGRT RH +F
Sbjct: 108 VQKCVRTL----DIEEVGRTTRHASF 129


>gi|229162453|ref|ZP_04290414.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus R309803]
 gi|228620932|gb|EEK77797.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus R309803]
          Length = 411

 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 154/396 (38%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV +++ FY   GGQ  DTG  + D   + + ++  +   + V     E     
Sbjct: 37  KDGNLYVVLNESAFYPTGGGQPYDTGT-LNDIDVINVEEINGEIRHLIVEQLHTEE---- 91

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A       ++   G  +  + +  D+     
Sbjct: 92  ----VEGKINWERRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGKETVTIDLETENL 145

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+    MN E+A              + +RVV +E  D 
Sbjct: 146 HTET-VEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRKE--PNMTENIRVVIIENYDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S   
Sbjct: 257 KQLNSSETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQSIEIHAGLLISKAF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTITLDMNA--LLKNALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 AIE-GKGGGNKKSARGGGKVIMSGDEFLNQLVSSLQ 408


>gi|210622878|ref|ZP_03293401.1| hypothetical protein CLOHIR_01349 [Clostridium hiranonis DSM 13275]
 gi|210153983|gb|EEA84989.1| hypothetical protein CLOHIR_01349 [Clostridium hiranonis DSM 13275]
          Length = 399

 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 90/401 (22%), Positives = 162/401 (40%), Gaps = 33/401 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             ++V+      K  V  DQT F+   GGQ  D G   G  +   + +  K         
Sbjct: 15  DAKVVDVIEREGKYLVELDQTAFFPGGGGQFCDKGTLNGIEVVDMLEENGK--------- 65

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                    +E  +   ID+  R      H   H+L     T    +    G  +  D  
Sbjct: 66  VYHIIEENLSENQVKGAIDWDRREDGMHQHFGQHVLSGCFFTKYNRNTC--GFHLGEDIS 123

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+      T   L  +E   ND+I QN+ V   + ++++   +     L     + +R
Sbjct: 124 TVDI--EGEFTDEMLLEVEKMANDVIRQNIHVDIFVPSKDELEDTWTRRKLPDT-AEEIR 180

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +   D        C G H   TGE+ LL I      R    R+E + G+RA  +++ 
Sbjct: 181 IVRIGDLDTN-----ACCGCHPEYTGELKLLKIKRTEKCRNAT-RVEFLAGKRAVDYVLK 234

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-------LQLIHAKRKLQLNVEDLSCHK 790
           +D  + SL   L  ++ N+   V+ I E+  +       L+      +++  VE      
Sbjct: 235 RDAVMTSLCKHLSCNEENIEKCVKNIEEKCDEIIHQKNMLEDELLDYRIKELVE--KAEL 292

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           + D+  +  +  + DS+ L  ++  + +  +  ++ L  +S   + +V+   TED +D  
Sbjct: 293 VDDIKLIKAVFKDKDSRYLNKMVKKITENEKMAVMFLNEVSN--RINVVFAYTED-IDGP 349

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           +  D+ R +  ++ G GGG R + AQ GG N  K+D+ I  
Sbjct: 350 SMSDILRSNISIIEGKGGGSR-YSAQGGGVNNGKSDEFIEK 389


>gi|228986711|ref|ZP_04146841.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773042|gb|EEM21478.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 411

 Score =  147 bits (372), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 146/379 (38%), Gaps = 29/379 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG   G  +       ++    I       E     
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPHDTGTLNGITVLGVEEVNEEIRHFITKQLHTEE----- 91

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  +       ++   G  +  + +  D+     
Sbjct: 92  ----VEGKINWERRFDHMQQHAAQHILSASFWD--YFNIPTIGFHLGRETVTIDLETENL 145

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N+I+ +N P+    M+ E+A              + +R+V +E  D 
Sbjct: 146 HTET-VEKAVQIANNIVFENHPIRIEWMDLEEAKTLPLRKE--PNMTENIRIVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSESDIPAKVAQLLTSQKENEKTIQTMNEKLLYAEANELLQQPAKIHASILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTFDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGP 880
            +  G GGG    A+ GG 
Sbjct: 374 AIE-GKGGGNKKSARGGGK 391


>gi|14591706|ref|NP_143794.1| alanyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|74570355|sp|O57734|ALAXL_PYRHO RecName: Full=Alanyl-tRNA editing protein AlaX-L; Short=AlaX-L;
           AltName: Full=Alanyl-tRNA deacylase AlaX-L
 gi|3258413|dbj|BAA31096.1| 404aa long hypothetical alanyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 404

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 87/406 (21%), Positives = 156/406 (38%), Gaps = 24/406 (5%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             +IV+      +VEVV D+T FY E GGQ GD G   G+   + + D  +K   IF   
Sbjct: 16  DAKIVDVRKEKDRVEVVLDRTIFYPEGGGQPGDRGVIKGNDFEIMVEDTIEKNGEIFH-I 74

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +   I +    + L +D++ R      H+  H+L   L  +     +  G  I  D  
Sbjct: 75  GKLRGEIPKEGEKVKLYLDWEWRYGNMQMHTGQHILSAVLKKLYDLDTT--GFNIFRDYA 132

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           + +V         E    E  VN II  +LPVV    ++     +       TK  +++R
Sbjct: 133 KIEVNGEVNWDMIER--AELEVNKIIINDLPVVIEEYDKLPEEIALKLRKNVTKVKEKIR 190

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +   D        CGGTHV ST E+ ++ ++        + RIE   G RA S +  
Sbjct: 191 IVKIGDVD-----VTPCGGTHVKSTREVGIIKVLRFYKKSKNLWRIEFTCGYRAISKMNE 245

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF- 796
                      +      ++ R+ E+      L+    + + ++            V   
Sbjct: 246 ILRDYWGSLDLMPNKNPPLIERINEVLRTVNSLENRIEELRREIWEWKGKALLKEGVKVG 305

Query: 797 ---MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
              +   +   + K+ ++      KK  + I++L      +K  +     ++     +  
Sbjct: 306 NYTVITHVENWNMKDAQAFAIDFVKKNSNTILLLA----NEKYVLFA---KNEGVPVSMR 358

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGP-NGNKA-DQAIAGVASFLK 897
           +L +     L GG GGG  ++A+        +  D A+  + S L+
Sbjct: 359 ELLKEVIDEL-GGKGGGTDNLARGRVEAKPEEIFDVALEKLRSHLQ 403


>gi|307266901|ref|ZP_07548420.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918058|gb|EFN48313.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 406

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 156/404 (38%), Gaps = 31/404 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
              I+++     K E+V D+T FY E GGQ  DTG   G  +     +            
Sbjct: 16  DANIIDKRKINNKWELVLDKTYFYPEGGGQPSDTGLIDGIKVYKIYEENDT--------- 66

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                      + +   +D++ R      H+  HLL   L    G+H            +
Sbjct: 67  VYHLADKCPEGIKVHCQVDWERRFDHMQQHTGQHLLSAVLEKKYGAHTQSFSIGDKSSHI 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
                        E   +E  VN  + +N+PV T   + E             + ++ +R
Sbjct: 127 TITKDTFN---EEEAFEVEKEVNSFVYKNIPVKTYFADEEMLKKLPLRK--QPQVSENIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  D      + CGGTHV +TGEI ++ I        GI R+E + G RA      
Sbjct: 182 IVEIEGID-----YSPCGGTHVKTTGEIGIVKIKKWEKTNKGI-RLEFVAGFRALYDYHI 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792
           ++  + +L   L   + N++  V ++ EE ++++      K  + +E+      S     
Sbjct: 236 KNNYVNALCHLLSEQEENILEHVLKLLEENKEVKKEVNILKENILLEESRNLIKSSELHG 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            ++ +  +     ++E+K +   +    +   I ++G  + +   +++  + D+    N 
Sbjct: 296 GIHIVYKLYENRTTEEIKILAKYIVSNDK--CIAILGNKRGETGDLVVSRSGDVDIVVNG 353

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               +   + +  G GGG  +M Q G    ++ + A+    S +
Sbjct: 354 --FFKEVLR-VFDGKGGGNAYMCQGGVSQ-DRLELAMDKALSIV 393


>gi|299542048|ref|ZP_07052367.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298725471|gb|EFI66116.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 391

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 144/385 (37%), Gaps = 23/385 (5%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
              +  VV   T FY   GGQ  DTG      +        +    I       E  +  
Sbjct: 26  ESDRHYVVLSNTAFYPTGGGQPHDTGTLNALKVIDVEKVNDEIRHYI-------EGDLST 78

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            +  +   +++  R      H+  H+L  A   +   +       +  + +  D+   + 
Sbjct: 79  LDGVVHGKLNWSRRFDHMQQHAGQHILTAAF--VELFNAQTVSFHLGSEQVTIDLAI-ET 135

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           I+  +L + E   NDII +N P+ T  +  ++         +       +R+V +   D 
Sbjct: 136 ISEQQLAAAEARANDIILENRPIQTTWVTEQELGNYNLRKEV--AVTGDIRLVIIPNFDY 193

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH +STG++  + I+       G  R+  + GQR  + L  + + L  +A
Sbjct: 194 N-----GCGGTHPTSTGQVSTIKILGTE-KMKGNVRVSFVCGQRVLTELGMRKKILADVA 247

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
             L V +      + ++    +  +   A  K +L   +     +     ++   ++   
Sbjct: 248 RQLSVPEVEAATALSKVLSTQKTTEKALAAAKEELLTYEARA-LVNSEGVVTAAFNQRTM 306

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +EL+ +   +  + Q  +I L+    E K   +     ++       D+A+ +  ++  G
Sbjct: 307 QELQKIARLIVTE-QKDVIALLVSENEGKLQFVAARGNNVSKSMK--DVAQKALPLIN-G 362

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAG 891
            GGG   M Q GG      ++ +A 
Sbjct: 363 KGGGSDQMVQGGGDCTVSKEELLAA 387


>gi|297583294|ref|YP_003699074.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus selenitireducens
           MLS10]
 gi|297141751|gb|ADH98508.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus selenitireducens
           MLS10]
          Length = 407

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 87/400 (21%), Positives = 146/400 (36%), Gaps = 28/400 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G  V +VFDQT FY E GGQ  D G   G  +     +  +      + H +     + 
Sbjct: 26  EGGTVYLVFDQTWFYPEGGGQPADKGSISGLPVTDVQLEDGE------IRHMVERGVEVN 79

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D+  R      H A HLL   L              +  +    +VT    
Sbjct: 80  VGDTVHCKLDWNRRLDYMQQHHAQHLLSAVL--DDQFDAPTVSVHLGSEECAIEVTWDD- 136

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T  E+    D VN  I +N  + T  + RE+A             +  VR+V VE  D 
Sbjct: 137 LTEREVLEAVDQVNTWIRENHLINTTNVTREEADRYPLRKT--PAVSGDVRLVIVEGIDY 194

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+ L+++      R G+ RI  + G RA + L          +
Sbjct: 195 N-----PCGGTHPLRTGEVQLVHLTGMERARGGL-RITYLAGGRAVARLRQFQRITDEAS 248

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN----FMSHIIS 802
             L      +   + +  + +++L       K QL  +  +      VN     +  I  
Sbjct: 249 RLLNSPPEGITDTLHKQIDAHQRLDKEMRSLKEQLLEQLFADWLKGAVNTKEAMVPFIKE 308

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS----VLIVVTEDLLDRFNAVDLARL 858
           +   KEL+ +     + +    ++   +SK+         ++    D       V+  + 
Sbjct: 309 DFGMKELQKLSAKAVQALPDRPVLFATVSKDDNGDSHLEFVLAAGRDCGVDLKRVE--KD 366

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              ++  G GGG P   Q GG      +   + V+  LK+
Sbjct: 367 VFALI-QGKGGGSPKKLQGGGKADLSLEAFKSRVSDILKQ 405


>gi|75762317|ref|ZP_00742198.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228902122|ref|ZP_04066286.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis IBL
           4222]
 gi|74490200|gb|EAO53535.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228857548|gb|EEN02044.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis IBL
           4222]
          Length = 411

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 147/396 (37%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPHDTGT---------LNDIDVINVEEIHGEIRHFIVEKL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A       ++   G  +  + +  D+     
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGKETVTIDLEIENL 145

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++   +  N I+ +N  +    MN E A              + +RVV +E  D 
Sbjct: 146 HTET-VEKAINIANKIVFENHQIHIEWMNLEKAKTFPLRKE--PTITENIRVVIIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +   +  +       +S + 
Sbjct: 257 KQLNSSESDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIHADILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGRAIMSGDEFLNQLVSSLQ 408


>gi|229146190|ref|ZP_04274565.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST24]
 gi|228637249|gb|EEK93704.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST24]
          Length = 411

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 145/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEDVEGKINWERRFDHMQQHAAQHILSAAFWDHFNMPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+  + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAIQIANKIVFENHPIRIQWMNLEEAKRLPLRKE--PTMTENIRVVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K+++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMEQQQQIMKNVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S + 
Sbjct: 257 KQLNSSETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQHPTEIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|229157195|ref|ZP_04285275.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus ATCC 4342]
 gi|228626259|gb|EEK83006.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus ATCC 4342]
          Length = 411

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 146/379 (38%), Gaps = 29/379 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG   G  +       ++    I       E     
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPHDTGTLNGITVLGVEEVNEEIRHFITKQLHTEE----- 91

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  +       ++   G  +  + +  D+     
Sbjct: 92  ----VEGKINWERRFDHMQQHAAQHILSASFWDHF--NIPTIGFHLGRETVTIDLETENL 145

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N+I+ +N P+    M+ E+A              + +R+V +E  D 
Sbjct: 146 HTET-VEKAVQIANNIVFENHPIRIEWMDLEEAKTLPLRKE--PNMTENIRIVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSESDIPAKVAQLLTSQKENEKTIQTMNEKLLYAEANELLQQPAKIHASILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTFDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGP 880
            +  G GGG    A+ GG 
Sbjct: 374 AIE-GKGGGNKKSARGGGK 391


>gi|296504127|ref|YP_003665827.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis BMB171]
 gi|296325179|gb|ADH08107.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis BMB171]
          Length = 400

 Score =  147 bits (371), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 145/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 26  KDGNLYVVLNETAFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQL 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 77  HTEDVEGKINWERRFDHMQQHAAQHILSAAFWDHFNMPTIGFHLGKETVTIDLETENLHA 136

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+  + MN E+A              + +RVV +E  D 
Sbjct: 137 ET---VEKAIQIANKIVFENHPIRIQWMNLEEAKRLPLRKE--PTMTENIRVVMIENFDY 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K+++
Sbjct: 192 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMEQQQQIMKNVS 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S + 
Sbjct: 246 KQLNSSETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQHPTEIHAGILISKVF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 306 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 363 TIE-GKGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 397


>gi|147918761|ref|YP_687515.1| alanyl-tRNS synthetase-related protein [uncultured methanogenic
           archaeon RC-I]
 gi|110622911|emb|CAJ38189.1| alanyl-tRNS synthetase-related protein [uncultured methanogenic
           archaeon RC-I]
          Length = 390

 Score =  147 bits (371), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 149/393 (37%), Gaps = 30/393 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+V       K  VV  +T FY E GGQ  D G   G  +     +  +           
Sbjct: 18  EVVNVLNKDGKYHVVLAETNFYPEGGGQPADRGTIAGIPVEHVYEEGGE---------VY 68

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                   E ++   +D+  R  L   HS  HLL   +     +H  + GS    +    
Sbjct: 69  HVLAFAPAEKTVACKLDWARRFDLMQQHSGQHLLSAVM---YNNHGWETGSLHMSEEGLS 125

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
               +  +T   LK IED  N+++ ++L + T I+  E+A       +  T     +R+V
Sbjct: 126 VDVLTPDVTPEALKEIEDAANEVVTRDLEIKTHIVTPEEAKKYPNRKIPPT--AGTIRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +   D        C GTHV+ TGEI ++ I     ++  + R+    G RA      + 
Sbjct: 184 EISSHDFS-----PCCGTHVARTGEIGIIKITGTQKMKDSM-RLFFKCGGRALRDYQAKQ 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCHKIADVNFMS 798
           E +  L+   K  QG ++ R+E    E R       + K + L +E  +  + A    + 
Sbjct: 238 EIITKLSQLFKADQGKLLSRIEAHEAEARAHWKELTELKDKLLKIEAGNLARSASTPVIR 297

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
               +    +L S+   L +      IM++    EK+  +L   ++      +   L + 
Sbjct: 298 VAYEDKSFNDLMSLSKYLLQA--GDFIMILASVPEKR--LLFARSKKF--DVDCGKLMKE 351

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKAD--QAI 889
                  G GGG+P  A +G  +       +A 
Sbjct: 352 HLAAFN-GKGGGKPEFANAGFSSVEDLQRFEAF 383


>gi|229005861|ref|ZP_04163555.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides Rock1-4]
 gi|228755325|gb|EEM04676.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides Rock1-4]
          Length = 400

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 147/393 (37%), Gaps = 36/393 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +K+ V   +T FY   GGQ  DTG          + +                       
Sbjct: 28  EKLYVTLTETAFYPTGGGQPHDTGT---------LNEASVVNVEEVEGEIRHFISSELHT 78

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   I++Q R      H+A H+L  A        +   G  +  + +  D+   + ++
Sbjct: 79  KEVTGKINWQRRFDHMQQHTAQHILSAAFWDHF--DIPTIGFHLGKETITIDLDTPE-LS 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
                S     N I+ +N P+  + MN E+A              + +RVV +E  D   
Sbjct: 136 IETATSALQIANQIVFENHPIHIKWMNLEEAKQLPLRKE--PTITENIRVVIIENYDYN- 192

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                CGGTH   TGE+  ++I+     + GI R+  + G R    +    + +K ++  
Sbjct: 193 ----GCGGTHPKYTGEVGPIHIIEWERNKGGI-RLTLVAGWRVLKLMERHQQIIKDVSKQ 247

Query: 749 LKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISE 803
           L  S+ ++  +V ++     E  + LQ ++ K       + L     I     +S + + 
Sbjct: 248 LNSSENDIPNKVTQLLTSQEENEKALQTMNEKLLFVEANKLLQHSIDIHAGTLISKVFTH 307

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              +E+  +   + ++ ++ I  LV    E+K   ++   + +    N   + + +   +
Sbjct: 308 RSMQEITKLSAIITEQNENSITYLV-TENEEKLQCVLACGKAVTANMN--TILKNALPTI 364

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG    A+ GG        AI     FL
Sbjct: 365 E-GKGGGNQKSARGGGK-------AIITGKEFL 389


>gi|228992319|ref|ZP_04152250.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus pseudomycoides DSM
           12442]
 gi|228767344|gb|EEM15976.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus pseudomycoides DSM
           12442]
          Length = 414

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 144/377 (38%), Gaps = 29/377 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +K+ V   +T FY   GGQ  DTG          + +                       
Sbjct: 42  EKLYVTLTETAFYPTGGGQPHDTGT---------LNEASVVNVEEVEGEIRHFISSELHT 92

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   I++Q R      H+A H+L  A        +   G  +  + +  D+   + ++
Sbjct: 93  KEVTGKINWQRRFDHMQQHTAQHILSAAFWDHF--DIPTIGFHLGKETITIDLDTPE-LS 149

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
                S     N I+ +N P+  + MN E+A              + +RVV +E  D   
Sbjct: 150 IETATSALQIANQIVFENHPIHIKWMNLEEAKQLPLRKE--PTITENIRVVIIENYDYN- 206

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                CGGTH   TGE+  ++I+     + GI R+  + G R    +    + +K ++  
Sbjct: 207 ----GCGGTHPKYTGEVGPIHIIGWERNKGGI-RLTLVAGWRVLKLMKRHQQIIKDVSKQ 261

Query: 749 LKVSQGNVVGRVEEIW----EEYRKLQLIHAKRK-LQLNVEDLSCHKIADVNFMSHIISE 803
           L  S+ ++  +V ++     E  + LQ ++ K   ++ N        I     +S + + 
Sbjct: 262 LNSSENDIPNKVTQLLTSQEENEKALQTMNEKLLFVEANKLLQQSIDIHAGTLISKVFTH 321

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              +E+  +   + ++ ++ I  LV    E+K   ++   + +    N   + + +   +
Sbjct: 322 RSMQEITKLSAIITEQNENSITYLV-TENEEKLQCVLACGKAVTANMN--TILKNALPTI 378

Query: 864 GGGGGGGRPHMAQSGGP 880
             G GGG    A+ GG 
Sbjct: 379 E-GKGGGNQKSARGGGK 394


>gi|229128895|ref|ZP_04257871.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-Cer4]
 gi|228654600|gb|EEL10462.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-Cer4]
          Length = 411

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 145/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I++  R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEDVEGKINWDRRFDHMQQHAAQHILSAAFWDHFNMPTIGFHLGKVTVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+  + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAIQIANKIVFENHPIRIQWMNLEEAKTLPLRKE--PTMTENIRVVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K+++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKNVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S + 
Sbjct: 257 KQLNSSETDIPTKVAQLLTSQKENEKAIQTMNEKLLFAEANELLQHPTEIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            L  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TLE-GKGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|229151818|ref|ZP_04280017.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus m1550]
 gi|228631631|gb|EEK88261.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus m1550]
          Length = 411

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 143/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I++  R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEDVEGKINWDRRFDHMQQHAAQHILSAAFWDHFNMPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+  + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAIQIANKIVFENHPIRIQWMNLEEAKRLPLRKE--PTMTENIRVVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S + 
Sbjct: 257 KQLNSSETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQHPTEIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|229174283|ref|ZP_04301816.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus MM3]
 gi|228609140|gb|EEK66429.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus MM3]
          Length = 411

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 144/397 (36%), Gaps = 36/397 (9%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPHDTGT---------LNDIDVINVEEIHGEIRHFIVEKL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDHFNIPTIGFHLGKETVTIDLEAENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+ T  MN E+A A            + +RVV +E  D 
Sbjct: 148 ET---VEKAVHIANKIVFENHPIRTLWMNLEEAKALPLRKE--PTLTENIRVVIIENYDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLMGHQQQIIKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S + 
Sbjct: 257 KQLNSSESDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLQQPTEIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSTIITEQQEHAITYFV-IENEDKLQCILACGKTVTLEMNA--LLKEALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +  G GGG    A+ GG        A+     FL +
Sbjct: 374 TIE-GKGGGNKKSARGGGK-------ALMTGDEFLNQ 402


>gi|163941229|ref|YP_001646113.1| threonyl/alanyl tRNA synthetase SAD [Bacillus weihenstephanensis
           KBAB4]
 gi|163863426|gb|ABY44485.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus weihenstephanensis
           KBAB4]
          Length = 411

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 149/391 (38%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G  +        +    I                 +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNGVPVSNVEEVNGEIRHFII---------EQLHTEEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID++ R      H+A H+L  A       ++   G  +  + +  D+  +   T   
Sbjct: 93  EGKIDWERRFDHMQQHTAQHILSAAFWDHF--NIPTIGFHLGKETITIDLETANLSTET- 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A A            + +RVV +E  D      
Sbjct: 150 VEKAAQIANQIVFENHPIRIKWMNLEEAKALPLRKE--PTMTENIRVVIIENYDYN---- 203

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R+   +  Q + +K ++  L  
Sbjct: 204 -GCGGTHPKHTGEVGPIQVLGWERNKGGI-RLTFIAGWRSLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDS 806
           S  ++  +V ++    ++ +        +L   + +       +I     +S   +    
Sbjct: 262 SDTDIPAKVAQLLTSQKENEKAVQAMNEKLLFVEANELLQQPAEIYAGTLISRAFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    +   L + S   +  G
Sbjct: 322 QEVAKLAAIITEQQEHAITYFV-IENEDKLQCILACGKAVT--LDMNTLLKDSLPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|228909431|ref|ZP_04073256.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis IBL
           200]
 gi|228850208|gb|EEM95037.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis IBL
           200]
          Length = 411

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 150/396 (37%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A            G  +  + +  D+  ++ 
Sbjct: 88  HTEDVEGKINWERRFDHMQQHAAQHILSAAFWDHFNM--PTIGFHLGKETVTIDL-ETEN 144

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           + +  ++      N I+ +N P+  + MN E+A              + +RVV +E  D 
Sbjct: 145 LHAEMVEKAIQIANKIVFENHPIRIQWMNLEEAKTLPLRKE--PNMTENIRVVIIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +   +  +       +S + 
Sbjct: 257 KQLNSSETDIPAKVAQLLTSQKENEKAIQTMNEKLLFVEANELLLQPIKIHADILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|229061186|ref|ZP_04198536.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH603]
 gi|228718057|gb|EEL69697.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH603]
          Length = 411

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 139/391 (35%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G  +                               +
Sbjct: 42  YVVLNETTFYPTGGGQPHDTGTLNGIPVINVEE---------IDGEIRHFIAEQLHTEEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+Q R      H+A H+L  +                    +  + T+    T   
Sbjct: 93  DGKIDWQRRFDHMQQHTAQHILSASFWDHFNIPTIGFHLGKETVTIDLETTNLSIET--- 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+    MN ++A              + +RVV +E  D      
Sbjct: 150 VEKAVQIANQIVFENHPIRIEWMNLDEAKKLPLRKE--PTMTENIRVVIIENFDYN---- 203

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++       G  R+  I G R+   +    + L  ++  L  
Sbjct: 204 -GCGGTHPKHTGEVGPIQVLGWER-NKGRIRLTFIAGWRSLKLMGQHQQILTDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +        +L   + +       +I     +S   +    
Sbjct: 262 SETDIPAKVAQLLTSQKENEKAVQAMNEKLLFVEANELLQQSEEIHAGTLISRAFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    +   L + +   + G 
Sbjct: 322 QEVAKLAAIITEQQEHAITYFV-IENEDKLQCILACGKAVT--LDMNTLLKGALPSIEGK 378

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGG + + A+ GG      D+ +  + S L+
Sbjct: 379 GGGNKKN-ARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|228998375|ref|ZP_04157966.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides Rock3-17]
 gi|228761296|gb|EEM10251.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides Rock3-17]
          Length = 400

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 143/377 (37%), Gaps = 29/377 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +K+ V   +T FY   GGQ  DTG          + +                       
Sbjct: 28  EKLYVTLTETAFYPTGGGQPHDTGT---------LNEASVVNVEEVEGEIRHFISSELHT 78

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   I++Q R      H+A H+L  A        +   G  +  + +  D+   + ++
Sbjct: 79  KEVTGKINWQRRFDHMQQHTAQHILSAAFWDHF--DIPTIGFHLGKETITIDLDTPE-LS 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
                S     N I+ +N P+  + MN E+A              + +RVV +E  D   
Sbjct: 136 IETATSALQIANQIVFENHPIHIKWMNLEEAKQLPLRKE--PTITENIRVVIIENYDYN- 192

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                CGGTH   TGE+  ++I+     + GI R+  + G R    +    + +K ++  
Sbjct: 193 ----GCGGTHPKYTGEVGPIHIIEWERNKGGI-RLTLVAGWRVLKLMERHQQIIKDVSKQ 247

Query: 749 LKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISE 803
           L  S+ ++  +V ++     E  + LQ ++ K       + L     I     +S + + 
Sbjct: 248 LNSSENDIPNKVTQLLTSQEENEKALQTMNEKLLFVEANKLLQHSIDIHAGTLISKVFTH 307

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              +E+  +   + ++ ++ I  LV    E+K   ++   + +    N   + + +   +
Sbjct: 308 RSMQEITKLSAIITEQNENSITYLV-TENEEKLQCVLACGKAVTANMN--TILKNALPTI 364

Query: 864 GGGGGGGRPHMAQSGGP 880
             G GGG    A+ GG 
Sbjct: 365 E-GKGGGNQKSARGGGK 380


>gi|218898715|ref|YP_002447126.1| alanyl-tRNA synthetase family protein [Bacillus cereus G9842]
 gi|218543242|gb|ACK95636.1| alanyl-tRNA synthetase family protein [Bacillus cereus G9842]
          Length = 400

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 146/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 26  KDGNLYVVLNETAFYPTGGGQPHDTGT---------LNDIDVINVEEIHGEIRHFIVEKL 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A       ++   G  +  + +  D+     
Sbjct: 77  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGKETVTIDLEIENL 134

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++   +  N I+ +N  +    MN E A              + +RVV +E  D 
Sbjct: 135 HTET-VEKAINIANKIVFENHQIHIEWMNLEKAKTFPLRKE--PTITENIRVVIIENFDY 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 192 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHII 801
             L  S  ++  +V ++    ++ +        +L   + +   +  +       +S + 
Sbjct: 246 KQLNSSGSDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIHADILISKVF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 306 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 363 TIE-GKGGGNKKSARGGGRAIMSGDEFLNQLVSSLQ 397


>gi|15894193|ref|NP_347542.1| alanyl-tRNA synthetase-like protein [Clostridium acetobutylicum
           ATCC 824]
 gi|15023805|gb|AAK78882.1|AE007606_2 Alanyl-tRNA synthetase related protein [Clostridium acetobutylicum
           ATCC 824]
 gi|325508321|gb|ADZ19957.1| Alanyl-tRNA synthetase related protein [Clostridium acetobutylicum
           EA 2018]
          Length = 387

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/401 (18%), Positives = 149/401 (37%), Gaps = 33/401 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +G+IV+   +  K E+V D+T FY E GGQ  D G      +                  
Sbjct: 16  EGKIVDVLENDGKYEIVLDETSFYPEGGGQPCDLGTINNIPVEYVYEKGDT--------- 66

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                       +    +D+  R+     H+  HLL  A   +        G  +  D +
Sbjct: 67  IYHVMKERPEGNTAKCKVDFLRRQDNIQQHTGEHLLSAAFFKLYNG--VNYGFHMGEDYV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+   + +T+  +K IE   N  I  N+   T  M++ +A        +      ++R
Sbjct: 125 TIDI-DMEEVTNDMIKKIEAEANAYIYANVETKTYFMSKPEAEKLPLRKAIKA--EGKIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +   D      + C GTHV  TGE+ ++ ++       G+ R+    G+RA      
Sbjct: 182 IVQLGDVD-----YSACCGTHVVRTGEVGIIKVLRTEKY-KGMTRVYFKCGRRAFDEYSK 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-- 795
           +   +  L   L + + N++ +V+   EE     L     + + N   L   KI + N  
Sbjct: 236 EHNIITKLQKNLSIDEDNILNKVQTTMEEISN--LKKKLLEYKKNEAKLEVEKIKEKNNN 293

Query: 796 -FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +     + D   L+ + D ++ +     ++++    + +        ++ +D      
Sbjct: 294 GVIFEHYEDGDFSFLEEIYDGIKDE---KAVIILTSGVDNRILFA----QNGIDDIECGK 346

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           + + + K    G GGG    AQ+   N +  ++    +   
Sbjct: 347 IFKENIKEYN-GRGGGNAKRAQAAFSNKDDLNKFAKFLREL 386


>gi|90018162|gb|ABD83894.1| alanyl-tRNA synthetase-like [Ictalurus punctatus]
          Length = 92

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
            + IR  F++FF++  HE + SSS IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6  TAAQIREKFIDFFRRYEHEYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRT 83
                 QKC+RAGGK NDLD+VG+ 
Sbjct: 66 LKRAANTQKCIRAGGKRNDLDDVGKD 91


>gi|261884369|ref|ZP_06008408.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 274

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/234 (35%), Positives = 129/234 (55%), Gaps = 11/234 (4%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL     NR ++  +HSATH+L  AL  +LG+H++Q GS +  D LRFD +H KP+T  
Sbjct: 52  IVLCEVSLNRLEIRRHHSATHILQAALRNVLGAHIAQAGSSVEADKLRFDFSHPKPVTKE 111

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           EL+ IE+ VN+ I +  P    IM+ ++A  SGA AL G KY D+VRV+++        S
Sbjct: 112 ELEKIENFVNEAILKGAPAKIEIMDIQNAKKSGAIALFGEKYADKVRVLTLGP------S 165

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTHV +  EI   +IV ES + AG+RRIEA+  + A        +++  +   LK
Sbjct: 166 KELCGGTHVENLNEIGSFFIVRESGVSAGVRRIEAVCSKAALELSKEFRKEINDIKDSLK 225

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            +   +   ++++ +E + LQ      K   N +DL+   I  V  +     E+
Sbjct: 226 GADPLLS--IKKLKDEIKSLQND---LKNASNTKDLNVKDINGVKVVVSKFDEI 274


>gi|115704026|ref|XP_001203291.1| PREDICTED: similar to Alanyl-tRNA synthetase, mitochondrial
           precursor, putative, expressed, partial
           [Strongylocentrotus purpuratus]
 gi|115755043|ref|XP_796369.2| PREDICTED: similar to Alanyl-tRNA synthetase, mitochondrial
           precursor, putative, expressed, partial
           [Strongylocentrotus purpuratus]
          Length = 111

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 146 LSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVF 205
           +  ++++      NFW M E  PCGPC EI FD+           + +    +EIWNLVF
Sbjct: 1   IPDERVMPFGMKVNFWEMGEV-PCGPCIEIHFDRIGDRDARA-MVNMDVPDVLEIWNLVF 58

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
            QF +++     +LPK  +DTGMGLER+A+V+Q +++NYD DLF  +  A  +
Sbjct: 59  TQFNRESDGTLNVLPKKCVDTGMGLERIASVIQGRSSNYDTDLFMPIFDAIHK 111


>gi|228959807|ref|ZP_04121482.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228799937|gb|EEM46879.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 411

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 145/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEDIEGKINWERRFDHMQQHAAQHILSAAFWDHFNMPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+  + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAIKIANKIVFENHPIRIQWMNLEEAKTLPLRKE--PTMTENIRVVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K+++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKNVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +   +  +       +S + 
Sbjct: 257 KQLNSSETDIPVKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|229197730|ref|ZP_04324450.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus m1293]
 gi|228585807|gb|EEK43905.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus m1293]
          Length = 411

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 151/396 (38%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG   G  +       ++    I       E     
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPHDTGTLNGITVFGVEEVNEEIRHFITKQLHTEE----- 91

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  +       ++   G  +  + +  D+     
Sbjct: 92  ----VEGKINWERRFDHMQQHAAQHILSASFWDHF--NIPTIGFHLGRETVTIDLETENL 145

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N+I+ +N P+    M+ E+A              + +RVV +E  D 
Sbjct: 146 HTET-VEKAVQIANNIVFENHPIRIEWMDLEEAKTLPLRKE--PNMTENIRVVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  ++++       G  R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIHVLGWER-NKGSIRLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSEADIPVKVAQLLTSQKETEKAMQTMNEKLLYAEANELLQQPTKIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 AIE-GKGGGNKKSARGGGKAIMTGDEFLNQLVSSLQ 408


>gi|229179908|ref|ZP_04307254.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus 172560W]
 gi|228603589|gb|EEK61064.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus 172560W]
          Length = 411

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 152/396 (38%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG   G  +       ++    I             
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPHDTGTLNGIAVLDVEEVDEEIRHFI---------AEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L          ++   G  +  + +  D+  ++ 
Sbjct: 88  HTEDVEGKINWERRFDHMQQHAAQHILSAVFWD--YFNIPTIGFHLGKETITIDL-ETEN 144

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           + +  ++      N I+ +N P+    MN E+A              + +RVV +E  D 
Sbjct: 145 LHAETVEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRKE--PTMTENIRVVIIENYDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKCTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S   
Sbjct: 257 KQLNSSETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTEIHAGLLISKAF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           ++   +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TDRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 AIE-GKGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|229191707|ref|ZP_04318685.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus ATCC 10876]
 gi|228591753|gb|EEK49594.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus ATCC 10876]
          Length = 411

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 153/396 (38%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG   G  +       ++    I             
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPHDTGTLNGIAVLDVEEVDEEIRHFI---------AEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ 
Sbjct: 88  HTEDVEGKINWERRFDHMQQHAAQHILSAAFWD--YFNIPTIGFHLGKETITIDL-ETEN 144

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           + +  ++      N I+ +N P+    MN E+A              + +RVV +E  D 
Sbjct: 145 LHAETVEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRKE--PTMTENIRVVIIENYDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKCTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S   
Sbjct: 257 KQLNSSETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTEIHAGLLISKAF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           ++   +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TDRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 AIE-GKGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|229117082|ref|ZP_04246462.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock1-3]
 gi|228666371|gb|EEL21833.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock1-3]
          Length = 411

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 159/394 (40%), Gaps = 29/394 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
             + VV ++T FY   GGQ  DTG   G  +        +    I               
Sbjct: 39  DNLYVVLNETAFYPTGGGQPYDTGTLNGTLVTNVEEVNGEIRHFI---------AEQLET 89

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + 
Sbjct: 90  AEVEGKINWERRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGKETVTIDL-ETENLP 146

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  ++      N+I+ +N P+  + MN E+A              + +RVV +E  D   
Sbjct: 147 AETIEKAVQIANNIVFENHPIRIQWMNLEEAKTLPLRKE--PTLTENIRVVIIENFDYN- 203

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                CGGTH   TGE+ L+ +++    + GI R+  I G R    +  Q + +K ++  
Sbjct: 204 ----GCGGTHPRRTGEVGLIQVLNWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQ 258

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISE 803
           L  S+ ++  +V ++    ++ +        KL     +    + A+++    +S + + 
Sbjct: 259 LNSSETDIPAKVAQLLISQKENEKAIQTMNEKLLFAEANELLQQPAEIHAGFLISKVFTN 318

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +
Sbjct: 319 RSMQEVAKLSAIIIEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPAI 375

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG    A+ GG     +D+ +  + S L+
Sbjct: 376 E-GKGGGNKKSARGGGKAIMSSDEFLHQLISSLQ 408


>gi|229092592|ref|ZP_04223743.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-42]
 gi|228690745|gb|EEL44521.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-42]
          Length = 411

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 147/396 (37%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG   G  +       ++    I             
Sbjct: 37  KDGNLYVILNETAFYPTGGGQPHDTGTLNGITVFGVEEVNEEIRHFIT---------EQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVIIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAIMSGDEFLNQLISSLQ 408


>gi|206969398|ref|ZP_03230353.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH1134]
 gi|206736439|gb|EDZ53597.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH1134]
          Length = 400

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 153/396 (38%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG   G  +       ++    I             
Sbjct: 26  KDGNLYVVLNETAFYPTGGGQPHDTGTLNGIAVLDVEEVDEEIRHFI---------AEQL 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L          ++   G  +  + +  D+  ++ 
Sbjct: 77  HTEDVEGKINWERRFDHMQQHAAQHILSAVFWD--YFNIPTIGFHLGKETITIDL-ETEN 133

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           + +  ++      N I+ +N P+    MN E+A              + +RVV +E  D 
Sbjct: 134 LHAETVEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRKE--PTMTENIRVVIIENYDY 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 192 N-----GCGGTHPKCTGEVGSIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S   
Sbjct: 246 KQLNSSETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTEIHAGLLISKAF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           ++   +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 306 TDRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG +    D+ +  + S L+
Sbjct: 363 AIE-GKGGGNKKSARGGGKSVMNGDEFLNQLVSSLQ 397


>gi|228922330|ref|ZP_04085637.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837385|gb|EEM82719.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 411

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 143/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 37  KDGNLYVVLNETVFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEDVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N+I+ +N P+    MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAVQIANNIVFENHPICIEWMNLEEAKTLPLRKE--PTMTENIRVVIIENYDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKCTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIIKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S   
Sbjct: 257 KQLNSSETDIPAKVAQLLTAQKENEKTIQTMNEKLLFAEANELLQQSIEIHAGLLISKAF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           ++   +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L +    
Sbjct: 317 TDRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDDLP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 AIE-GKGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|218230827|ref|YP_002368436.1| alanyl-tRNA synthetase family protein [Bacillus cereus B4264]
 gi|218158784|gb|ACK58776.1| alanyl-tRNA synthetase family protein [Bacillus cereus B4264]
          Length = 400

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 145/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG          + D+                    
Sbjct: 26  KDGNLYVVLNETAFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQL 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 77  HTEDVEGKINWERRFDHMQQHAAQHILSAAFWDHFNMPTIGFHLGKETVTIDLETENLHA 136

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+  + MN E+A              + +RVV +E  D 
Sbjct: 137 ET---VEKAIQIANKIVFENHPIRIQWMNLEEAKRLPLRKE--PTMTENIRVVMIENFDY 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K+++
Sbjct: 192 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQSMKNVS 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S + 
Sbjct: 246 KQLNSSETDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLQHPTEIHAGILISKVF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 306 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ I  + S L+
Sbjct: 363 TIE-GKGGGNKKSARGGGKAIMSGDEFINQLVSSLQ 397


>gi|196044606|ref|ZP_03111841.1| alanyl-tRNA synthetase family protein [Bacillus cereus 03BB108]
 gi|225865605|ref|YP_002750983.1| alanyl-tRNA synthetase family protein [Bacillus cereus 03BB102]
 gi|196024641|gb|EDX63313.1| alanyl-tRNA synthetase family protein [Bacillus cereus 03BB108]
 gi|225788966|gb|ACO29183.1| alanyl-tRNA synthetase family protein [Bacillus cereus 03BB102]
          Length = 400

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 143/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG      +                           
Sbjct: 26  KDGNLYVILNETAFYPTGGGQPHDTGTLNSIAV---------LGVEEVDEEIRHFIAEQL 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 77  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 136

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 137 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVIIENFDY 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 192 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 246 KQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 306 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 363 TIE-GKGGGNKKSARGGGKAIMSGDEFLNQLISSLQ 397


>gi|311031431|ref|ZP_07709521.1| hypothetical protein Bm3-1_12936 [Bacillus sp. m3-13]
          Length = 400

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 136/378 (35%), Gaps = 27/378 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
              K   V +QT FY E GGQ  DTG      +        +    +       E+ +  
Sbjct: 25  ESGKWYAVLEQTAFYPEGGGQPYDTGILDDHKVTEVQEINGEIRHYL-------EQPLPE 77

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           T   +   I+++ R      H+  HLL  A   +                +  D    K 
Sbjct: 78  TTQDVTGNINWERRYDHMQQHAGQHLLSAAFEELFSYKTKSFHLGKEASTIDLDA---KG 134

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T  E+   E  VN II +N  +  + + +E+         L    ++ +R+V +   D 
Sbjct: 135 LTEQEILETETLVNKIILENRKIEAKWVTKEELSDYPLRNEL--SVSENIRLVIIPDFDY 192

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH  STG +  L I+S    +  + R+  + G R    L  + E L  L+
Sbjct: 193 N-----GCGGTHPHSTGGVASLKILSLE-KQKNMIRVSFVAGNRVLKQLHEKQEVLSELS 246

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
           S L   Q  +   V  +  + ++        K +L   + +        ++  + +  ++
Sbjct: 247 SLLNAPQNGMSDTVTRMLGQSKEQAKELKDMKERLLEYEAAALVSQTELVSGRSIIKSVL 306

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
              +  EL+S+   L    +   + L+      K   +     +     +   +A     
Sbjct: 307 QNREMAELQSMARKLVSTREDLNVFLIA-ENTGKLQFVGARGSE--SDLDMKFIANEVFA 363

Query: 862 VLGGGGGGGRPHMAQSGG 879
            +  G GGGR +  Q GG
Sbjct: 364 FIN-GKGGGRENFVQGGG 380


>gi|324327522|gb|ADY22782.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 411

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 148/374 (39%), Gaps = 29/374 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG  + D   + + ++  +     V     E         +
Sbjct: 42  YVVLNETAFYPTGGGQPYDTGT-LNDIDVINVEEIDGEIRHFIVEQLHTEE--------V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  +       ++   G  +  + +  D+      T   
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSASFWD--YFNIPTIGFHLGRETVTIDLETENLHTET- 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N+I+ +N P+    M+ E+A              + +R+V +E  D      
Sbjct: 150 VEKAVQIANNIVFENHPIRIEWMDLEEAKTLPLRKE--PNMTENIRIVMIENFDYN---- 203

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 204 -GCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKVIGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +        +L   + +       KI     +S + +    
Sbjct: 262 SESDIPAKVAQLLTSQKENEKTIQTMNEKLLYTEANELLQQPVKIHASILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTFDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGP 880
            GGG    A+ GG 
Sbjct: 378 KGGGNKKSARGGGK 391


>gi|229098065|ref|ZP_04229013.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-29]
 gi|228685256|gb|EEL39186.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-29]
          Length = 411

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 158/394 (40%), Gaps = 29/394 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
             + VV ++T FY   GGQ  DTG   G  +        +    I               
Sbjct: 39  DNLYVVLNETAFYPTGGGQPYDTGTLNGTLVTNVEEVNGEIRHFI---------AEQLET 89

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + 
Sbjct: 90  AEVEGKINWERRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGKETVTIDL-ETENLP 146

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  ++      N+I+ +N P+  + MN E+A              + +RVV +E  D   
Sbjct: 147 AETIEKAVQIANNIVFENHPIRIQWMNLEEAKTLPLRKE--PTLTENIRVVIIENFDYN- 203

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                CGGTH   TGE+ L+ +++    + GI R+  I G R    +  Q + +K ++  
Sbjct: 204 ----GCGGTHPRRTGEVGLIQVLNWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQ 258

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISE 803
           L  S+ ++  +V ++    ++ +        KL     +    + A+++    +S + + 
Sbjct: 259 LNSSETDIPAKVAQLLISQKENEKAIQTINEKLLFAEANELLQQPAEIHAGFLISKVFTN 318

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +
Sbjct: 319 RSMQEVAKLSAIIIEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPAI 375

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG    A+ GG      D+ +  + S L+
Sbjct: 376 E-GKGGGNKKSARGGGKAIMSGDEFLHQLISSLQ 408


>gi|227824520|ref|ZP_03989352.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905019|gb|EEH90937.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 402

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 145/398 (36%), Gaps = 38/398 (9%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G   E+V D T  + E GGQL D G      +               V H   +    
Sbjct: 24  EVGDHFEIVLDGTVIFPEGGGQLSDQGWIDDIPVYYAAESGDD------VRHFTHKALP- 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + + +D+  R      H   H+L +A         +  G  +  + +  D+   K
Sbjct: 77  -VGEKVTVRLDWDVRLDRMQQHCGEHMLSYAFWKT--CGANNVGFHMNEESVFIDL--DK 131

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +    +K  E + N  + +N P+ T        +          K    VR+V ++  D
Sbjct: 132 EVDEKTVKEAELSANAAVWENHPI-TLHYVPYTELGKYGLRKKNDKLRGIVRLVDIKEGD 190

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                +  C GTH   TG + L+ ++  +  + G  RIE + G+RA   +  +   L+  
Sbjct: 191 -----TCTCCGTHPPFTGMVGLIKVIRFNRYKGGS-RIEFLCGKRAVEAIHERSRILEET 244

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC--HK----IADVNFMSH 799
           ++ L V    V+  VE++ +E   L+    +R   L   +L     K     +   F+  
Sbjct: 245 SNLLSVKSEEVLPAVEKLHQEVLDLKASLRERTQDLFQAELPALLEKAPLLASGTRFVFV 304

Query: 800 IISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
           +      D K L  ++   ++KI + +I+        K       T+   +R    DL  
Sbjct: 305 LTEGTPRDGKSLMKLL-TGKEKILAALIL----KNGDKVMYQFAATKGAEER--CRDLC- 356

Query: 858 LSAKVLGGGGGGGRPHMAQSG---GPNGNKADQAIAGV 892
             A  +  G GGG P  +Q G   G +     +A+   
Sbjct: 357 TMAGNVFHGRGGGSPTSSQGGGIAGSDWKAQAKALEKA 394


>gi|42782693|ref|NP_979940.1| alanyl-tRNA synthetase family protein [Bacillus cereus ATCC 10987]
 gi|42738619|gb|AAS42548.1| alanyl-tRNA synthetase family protein [Bacillus cereus ATCC 10987]
          Length = 400

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 152/396 (38%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG   G  +       ++    I             
Sbjct: 26  KDGNLYVVLNETAFYPTGGGQPHDTGTLNGIAVLDVEEVDEEIRHFIT---------EQL 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A       ++   G  +  + +  D+     
Sbjct: 77  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGRETVTIDLETENL 134

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N+I+ +N P+    MN E+A              + +RVV +E  D 
Sbjct: 135 HTET-VEKAVQIANNIVFENHPIRIEWMNLEEAKTLPLRKE--PTMIENIRVVMIENFDY 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 192 N-----GCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLVGQQQQIMKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S + 
Sbjct: 246 KQLNSSESDISAKVAQLLTSQKENEKTIQTMTEKLLYAEANELLQHPTEIHAGILISKMF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 306 TNRSMQEVSKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKKALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 363 TIE-GKGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 397


>gi|222097079|ref|YP_002531136.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus Q1]
 gi|229140236|ref|ZP_04268794.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST26]
 gi|221241137|gb|ACM13847.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus Q1]
 gi|228643322|gb|EEK99595.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST26]
          Length = 411

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 151/396 (38%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG   G  +       ++    I             
Sbjct: 37  KDGNLYVVLNETAFYPTGGGQPHDTGTLNGIAVLDVEEVDEEIRHFIT---------EQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A       ++   G  +  + +  D+     
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGREIVTIDLETENL 145

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N+I+ +N P+    MN E A              + +RVV +E  D 
Sbjct: 146 HTET-VEKAVQIANNIVFENHPIRIEWMNLEAAKTLPLRKE--PTMIENIRVVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLVGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S + 
Sbjct: 257 KQLNSSESDIPAKVAQLLTSQKENEKTIQTMTEKLLYAEANELLQHPTEIHAGILISKMF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEVSKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKKALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 408


>gi|206976173|ref|ZP_03237082.1| alanyl-tRNA synthetase family protein [Bacillus cereus H3081.97]
 gi|217961027|ref|YP_002339595.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH187]
 gi|206745627|gb|EDZ57025.1| alanyl-tRNA synthetase family protein [Bacillus cereus H3081.97]
 gi|217063211|gb|ACJ77461.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH187]
          Length = 400

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 151/396 (38%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + VV ++T FY   GGQ  DTG   G  +       ++    I             
Sbjct: 26  KDGNLYVVLNETAFYPTGGGQPHDTGTLNGIAVLDVEEVDEEIRHFIT---------EQL 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A       ++   G  +  + +  D+     
Sbjct: 77  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGREIVTIDLETENL 134

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N+I+ +N P+    MN E A              + +RVV +E  D 
Sbjct: 135 HTET-VEKAVQIANNIVFENHPIRIEWMNLEAAKTLPLRKE--PTMIENIRVVMIENFDY 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 192 N-----GCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLVGQQQQIMKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S + 
Sbjct: 246 KQLNSSESDIPAKVAQLLTSQKENEKTIQTMTEKLLYAEANELLQHPTEIHAGILISKMF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 306 TNRSMQEVSKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKKALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 363 TIE-GKGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 397


>gi|196038530|ref|ZP_03105839.1| alanyl-tRNA synthetase family protein [Bacillus cereus NVH0597-99]
 gi|196030938|gb|EDX69536.1| alanyl-tRNA synthetase family protein [Bacillus cereus NVH0597-99]
          Length = 400

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 143/397 (36%), Gaps = 36/397 (9%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG   G  +                           
Sbjct: 26  KDGNLYVILNETVFYPTGGGQPHDTGTLNGIAV---------LGVEEVDEEIRHFIAEQL 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 77  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 136

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 137 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVMIENFDY 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 192 N-----GCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 246 KQLNSSESDIPAKVAQLLTSKKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 306 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQYILACGKTVTLDMNA--LLKEALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +  G GGG    A+ GG        A+     FL +
Sbjct: 363 TIE-GKGGGNKKSARGGGK-------ALMSGDEFLNQ 391


>gi|254686189|ref|ZP_05150048.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254744780|ref|ZP_05202458.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Kruger B]
 gi|254752980|ref|ZP_05205016.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Vollum]
          Length = 411

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 144/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG   G  +                           
Sbjct: 37  KDGNLYVILNETVFYPTGGGQPHDTGTLNGIAV---------LGVEEVDEEIRHFIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 408


>gi|228916251|ref|ZP_04079821.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928672|ref|ZP_04091708.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229123139|ref|ZP_04252346.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus 95/8201]
 gi|228660433|gb|EEL16066.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus 95/8201]
 gi|228830991|gb|EEM76592.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843449|gb|EEM88527.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 411

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 144/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG   G  +                           
Sbjct: 37  KDGNLYVILNETAFYPTGGGQPHDTGTLNGIAV---------LGVEEVDEEIRHFIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 408


>gi|49478299|ref|YP_037698.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329855|gb|AAT60501.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 411

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 142/397 (35%), Gaps = 36/397 (9%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG   G  +                           
Sbjct: 37  KDGNLYVILNETVFYPTGGGQPHDTGTLNGIAV---------LGVEEVDEEIRHFIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVIIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQYILACGKTVTLDMNA--LLKEALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +  G GGG    A+ GG        A+     FL +
Sbjct: 374 TIE-GKGGGNKKSARGGGK-------ALMSGDEFLNQ 402


>gi|165871092|ref|ZP_02215743.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0488]
 gi|167636463|ref|ZP_02394761.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0442]
 gi|170688416|ref|ZP_02879624.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0465]
 gi|218904751|ref|YP_002452585.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH820]
 gi|227813545|ref|YP_002813554.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str. CDC
           684]
 gi|254726044|ref|ZP_05187826.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A1055]
 gi|164713303|gb|EDR18829.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0488]
 gi|167528122|gb|EDR90914.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0442]
 gi|170667586|gb|EDT18341.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0465]
 gi|218539367|gb|ACK91765.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH820]
 gi|227004254|gb|ACP13997.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str. CDC
           684]
          Length = 400

 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 144/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG   G  +                           
Sbjct: 26  KDGNLYVILNETVFYPTGGGQPHDTGTLNGIAV---------LGVEEVDEEIRHFIAEQL 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 77  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 136

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 137 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVMIENFDY 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 192 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 246 KQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 306 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 363 TIE-GKGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 397


>gi|196034210|ref|ZP_03101620.1| alanyl-tRNA synthetase family protein [Bacillus cereus W]
 gi|195993284|gb|EDX57242.1| alanyl-tRNA synthetase family protein [Bacillus cereus W]
          Length = 400

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 144/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG   G  +                           
Sbjct: 26  KDGNLYVILNETAFYPTGGGQPHDTGTLNGIAV---------LGVEEVDEEIRHFIAEQL 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 77  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 136

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 137 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVMIENFDY 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 192 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 246 KQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 306 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 363 TIE-GKGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 397


>gi|229104160|ref|ZP_04234832.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-28]
 gi|228679177|gb|EEL33382.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-28]
          Length = 411

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 158/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G  +        +    I                 +
Sbjct: 42  YVVLNETAFYPTGGGQPYDTGTLNGTLVTNVEEVNGEIRHFI---------AEQLEAEEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGKETVTIDL-ETENLPAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N+I+ +N P+  + MN E+A          T   + +RVV +E  D      
Sbjct: 150 IEKAVQIANNIVFENHPIRIQWMNLEEAKTLPLRKE--TTLTENIRVVIIENFDYN---- 203

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+ L+ +++    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 204 -GCGGTHPRRTGEVGLIQVLNWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        +L     +    + A+++    +S + +    
Sbjct: 262 SETDIPAKVAQLLISQKENEKAIQTMNEKLLFAEANELLQQPAEIHAGLLISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   + I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEVAKLSAIITEQQEHAITYFI-IENDDKLQCILACGKTVTLDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSGDEFLHQLISSLQ 408


>gi|228947237|ref|ZP_04109531.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812484|gb|EEM58811.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 411

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 144/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG   G  +                           
Sbjct: 37  KDGNLYVILNETAFYPTGGGQPHDTGTLNGIAV---------LGVEEVDEEIRHFIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVMIESFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 408


>gi|52141918|ref|YP_084911.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|301055110|ref|YP_003793321.1| alanine-tRNA ligase [Bacillus anthracis CI]
 gi|51975387|gb|AAU16937.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|300377279|gb|ADK06183.1| alanine-tRNA ligase [Bacillus cereus biovar anthracis str. CI]
          Length = 411

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 144/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG   G  +                           
Sbjct: 37  KDGNLYVILNETVFYPTGGGQPHDTGTLNGIAV---------LGVEEVDEEIRHFIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVIIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 408


>gi|118478861|ref|YP_896012.1| alanine--tRNA ligase [Bacillus thuringiensis str. Al Hakam]
 gi|118418086|gb|ABK86505.1| alanine--tRNA ligase [Bacillus thuringiensis str. Al Hakam]
          Length = 411

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 143/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG      +                           
Sbjct: 37  KDGNLYVILNETAFYPTGGGQPHDTGTLNSIAV---------LGVEEVDEEIRHFIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVIIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKGVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAIMSGDEFLNQLISSLQ 408


>gi|229075515|ref|ZP_04208503.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock4-18]
 gi|228707611|gb|EEL59796.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock4-18]
          Length = 411

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 157/394 (39%), Gaps = 29/394 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
             + VV ++T FY   GGQ  DTG   G  +        +    I               
Sbjct: 39  DNLYVVLNETAFYPTGGGQPYDTGTLNGTLVTNVEEVNGEIRHFI---------AEQLET 89

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + 
Sbjct: 90  AEVEGKINWERRFDHMQQHAAQHILSAAFWDHF--NIPTIGFHLGKETVTIDL-ETENLP 146

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  ++      N+I+ +N P+  + MN E+A              + +RVV +E  D   
Sbjct: 147 AETIEKAVQIANNIVFENHPIRIQWMNLEEAKTLPLRKE--PTLTENIRVVIIENFDYN- 203

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                CGGTH   TGE+ L+ +++    + GI R+  I G R    +  Q + +K ++  
Sbjct: 204 ----GCGGTHPRRTGEVGLIQVLNWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQ 258

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISE 803
           L  S+ ++  +V ++    ++ +        KL     +    + A+++    +S +   
Sbjct: 259 LNSSETDIPAKVAQLLISQKENEKAIQTMNEKLLFAEANELLQQPAEIHAGFLISKVFIN 318

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +
Sbjct: 319 RSMQEVAKLSAIIIEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPAI 375

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG    A+ GG      D+ +  + S L+
Sbjct: 376 E-GKGGGNKKSARGGGKAIMSGDEFLHQLISSLQ 408


>gi|30263570|ref|NP_845947.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Ames]
 gi|47528968|ref|YP_020317.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186419|ref|YP_029671.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Sterne]
 gi|65320898|ref|ZP_00393857.1| COG2872: Predicted metal-dependent hydrolases related to
           alanyl-tRNA synthetase HxxxH domain [Bacillus anthracis
           str. A2012]
 gi|254759251|ref|ZP_05211277.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Australia 94]
 gi|30258205|gb|AAP27433.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Ames]
 gi|47504116|gb|AAT32792.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49180346|gb|AAT55722.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Sterne]
          Length = 411

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 144/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG   G  +                           
Sbjct: 37  KDGNLYVILNETVFYPTGGGQPHDTGTLNGIAV---------LGVEEVDEEIRHFIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSEADIPAKVAQLLTSQKENKKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 408


>gi|167640567|ref|ZP_02398829.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0193]
 gi|170708135|ref|ZP_02898582.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0389]
 gi|177652509|ref|ZP_02934976.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0174]
 gi|190564654|ref|ZP_03017575.1| alanyl-tRNA synthetase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|229600113|ref|YP_002867814.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0248]
 gi|254738662|ref|ZP_05196365.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|167511435|gb|EDR86819.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0193]
 gi|170126943|gb|EDS95823.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0389]
 gi|172082183|gb|EDT67250.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0174]
 gi|190563971|gb|EDV17935.1| alanyl-tRNA synthetase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|229264521|gb|ACQ46158.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0248]
          Length = 400

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 144/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG   G  +                           
Sbjct: 26  KDGNLYVILNETVFYPTGGGQPHDTGTLNGIAV---------LGVEEVDEEIRHFIAEQL 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 77  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 136

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 137 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVMIENFDY 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 192 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 246 KQLNSSEADIPAKVAQLLTSQKENKKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 306 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 363 TIE-GKGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 397


>gi|219850409|ref|YP_002464842.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus aggregans DSM
           9485]
 gi|219544668|gb|ACL26406.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus aggregans DSM
           9485]
          Length = 408

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 153/376 (40%), Gaps = 23/376 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT-EMSL 571
           +  D++ FY E GGQ  D G       R +      +++   V H + +   L T   S+
Sbjct: 33  LALDRSAFYPEGGGQPADHGWLTDADSRQRWAVQDVQSDNGVVWHIMSDDEPLPTAGNSV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  ID+  R      H   H+L  A   I   +       ++   +  D+     +   +
Sbjct: 93  IGQIDWTRRFDHMQQHCGQHILTAAF--IATCNAPTVSFHLSERSVTIDLAI-STLNDEQ 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            ++ +   N  I QNLP+  R +   +              N++VRVVS+   D      
Sbjct: 150 AQAAKAWANTAIWQNLPIQARFVTPTELAHIPLRKP--PTVNEQVRVVSIGDID-----H 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
           + CGGTH + +GE+  + I+  S  + G+ R+E + G R  + L  +D   +  A+ L V
Sbjct: 203 SACGGTHPARSGEVGAIAILGWSR-QRGMIRVEFVCGGRVIAALHERDRAARGAAAVLSV 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDS 806
               +   +  + E  + LQ    + + +L+             +     ++  +     
Sbjct: 262 GWTELPQAIARLQETQQALQRELTQTQRELDALRATQWYTQTPPVDGRRIVTVTLPTASI 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           + L+S+      ++  GI ++ G ++  +  +++    D     +A ++      VL GG
Sbjct: 322 ERLRSIA-GFIAELPGGIAIVAGGTE--RVQIVVACAADT--GADAREILAAGMSVL-GG 375

Query: 867 GGGGRPHMAQSGGPNG 882
            GGG+ H+AQ GG   
Sbjct: 376 RGGGQMHLAQGGGGQP 391


>gi|153854643|ref|ZP_01995893.1| hypothetical protein DORLON_01888 [Dorea longicatena DSM 13814]
 gi|149752747|gb|EDM62678.1| hypothetical protein DORLON_01888 [Dorea longicatena DSM 13814]
          Length = 384

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 153/384 (39%), Gaps = 34/384 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +++    +     VV DQT F+ E GGQ  DTG        + +TDV +K + I+     
Sbjct: 18  KVISCEEAKDGYRVVLDQTVFFPEGGGQYADTGV----LGTVNVTDVHEKDDVIYH---- 69

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L     +   I+++ R +    H+  H++   +        +  G  +  D    
Sbjct: 70  YTTAPLEVGSIVTGKINWEERFEKMQQHTGEHIVSGIVHERF--GYNNVGFHLGADYCTM 127

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D      I+  +LK IE   N+ + Q+L +     ++++       + +      +VR+V
Sbjct: 128 DF--DGTISKEQLKEIEAAANEAVYQDLEIEILYPSKDELKDMDYRSKIE--IEGQVRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +   D        C   HV +TGEI  + +VS ++ + G  RI  + G+RA      +D
Sbjct: 184 KIPGYD-----VCACCAPHVKTTGEIGAVKLVSMANYKGG-ERITMLCGRRAMRDYEKKD 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
              K +++ L   +  V   V ++ +E  +++   A+ + +L    ++   + +   ++ 
Sbjct: 238 AMTKEISALLCAKEYEVADAVGKLKDEQTRMKSQIAELQQKLLEFRVAEIPVEE-KIVTV 296

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
             S +     + +M+ L  K      +  G   +    V+   +ED           R  
Sbjct: 297 FDSALSGNLPREMMNRLLDKGAVICAVFAGTDTDGYRYVIGSRSED----------VRPI 346

Query: 860 AKVLG---GGGGGGRPHMAQSGGP 880
           +K L     G GGG+P M Q    
Sbjct: 347 SKALNVAFEGRGGGKPEMVQGSVK 370


>gi|134300172|ref|YP_001113668.1| phage tail protein I [Desulfotomaculum reducens MI-1]
 gi|134052872|gb|ABO50843.1| phage tail protein I [Desulfotomaculum reducens MI-1]
          Length = 404

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 91/397 (22%), Positives = 151/397 (38%), Gaps = 27/397 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
                K  ++F++T FY E GGQ  D G  + D  R     +  +     + H I     
Sbjct: 22  IEDQDKTGILFEETIFYPEGGGQPSDRGTLVCDARRTSHEVLHVEQRPEGIVHWIAGSLK 81

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                S++LT+D + R+     H   H+L        G      G  + P+    D+T  
Sbjct: 82  PTIGASVLLTVDAERRQDHMQQHHGQHILSAVFERNYGWDT--VGFHLGPETSTIDLTV- 138

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
             I+   L+ +E  VN II +N+PV T    RED        L      + VR+V +   
Sbjct: 139 GDISQDVLQEVELEVNRIIMENIPVKTEYYKREDLGQELIKKLPSD--QNEVRLVVIPGI 196

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        C GTH   TGE+    I+    +R G  R+  I G+R  + +    + L  
Sbjct: 197 DEN-----ACCGTHPQRTGEVGPCKILKIEKLR-GNIRLSFICGERTIAWMRQTADTLHQ 250

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDLSCHKI--ADVNFMSH 799
           L   +  S    + R+E+   E +KLQ         K +   ++L+   I   + + +  
Sbjct: 251 LEKAIGASGNEALIRLEKREVELKKLQKERKELLSLKYRYLAKELATEAISSGETSILIQ 310

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
             SE D + L+ V  +   +     +++ G        V++     +    N+V  A   
Sbjct: 311 HFSEADMEMLRGVATSWCAQSGRVAVLMGGT---GPFDVVMARGSGVATSMNSV--AAEL 365

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             VL  G GGG   + Q       K    +  +   +
Sbjct: 366 WPVLE-GKGGGSAELVQG---KAQKLP--VEQLKEMV 396


>gi|225026308|ref|ZP_03715500.1| hypothetical protein EUBHAL_00549 [Eubacterium hallii DSM 3353]
 gi|224956372|gb|EEG37581.1| hypothetical protein EUBHAL_00549 [Eubacterium hallii DSM 3353]
          Length = 387

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 143/370 (38%), Gaps = 29/370 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +   ++ ++T FY E GGQ  D G   G        +     + +      + +  L+  
Sbjct: 28  EGYYIILNETAFYPEGGGQPADKGTIEG--------EEVLDVQYVDGEICHIMKKPLKAG 79

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +V  I+++ R  L   HS  H++   +           G  +  + +  D++    +T
Sbjct: 80  EQVVGRINWEWRFDLMQQHSGEHIVSGMIHE--KYGYENVGFHMGEEVITIDLS--GMLT 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++  IE  VND I  N  V     +          +    +    +R+V     D   
Sbjct: 136 EEQVAEIEQKVNDYIWMNQEVNIFYPDERQRKLIPYRSK--KELTGEIRLVEFPGAD--- 190

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C G HV+   +I L+ I+S    R G+ R+E ++G+RA  +L    E+   +A  
Sbjct: 191 --LCACCGLHVTHASQIGLVKILSSKKFRDGV-RMEMLSGKRALEYLSKSAEQNSQVAVR 247

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
           L V +      V+ + +E   L+   A  K Q + E ++   +   N +  I  +++  E
Sbjct: 248 LSVKEKETKDAVQRLLDEVYNLKGELAAEK-QKHFEQIAASCVGKENVL-LIEGDMEPVE 305

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           ++   DA+     SG+      + +      I          +  +L +   K L  G G
Sbjct: 306 VRKCTDAILDTC-SGVAAFFAGNDKDGYKYAIG-----QREGDVRELVKQVNKELN-GRG 358

Query: 869 GGRPHMAQSG 878
           GG+P  AQ  
Sbjct: 359 GGKPFFAQGS 368


>gi|302874189|ref|YP_003842822.1| Alanyl-tRNA synthetase, class IIc-like [Clostridium cellulovorans
           743B]
 gi|307689551|ref|ZP_07631997.1| Alanyl-tRNA synthetase, class IIc-like protein [Clostridium
           cellulovorans 743B]
 gi|302577046|gb|ADL51058.1| Alanyl-tRNA synthetase, class IIc-like [Clostridium cellulovorans
           743B]
          Length = 401

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 156/400 (39%), Gaps = 32/400 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           EI+       +  V  D+T FY E GGQ  DTG      +     D         ++H +
Sbjct: 17  EIINILEKDNEFHVELDKTYFYPEGGGQPSDTGFIETSKVTYVYED------QGIIYHVV 70

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            ++           ++D+  R      H   H+L  A   +   +V+     +  +    
Sbjct: 71  DKK--PIKLKKTKCSLDWNRRFDHMQQHLGQHILSAAFLELF--NVNTIAFHLGSENCTI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+   KP+T AE++  E   N  I +N+ V     ++ +            K ND +R+V
Sbjct: 127 DL--DKPLTDAEIREAESLANKTILENINVEFLFPSKAEL-KKFHIKKTIPKTNDAIRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            ++  D        C G H +ST E+ ++ I      + GI R+E + G R        +
Sbjct: 184 KIDDFD-----INPCCGLHPNSTLEVQIIKIKKYEKHKTGI-RLEFLCGNRGIKDSFIIE 237

Query: 740 EKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           + +  L   LK +    +         ++ +  E ++L+ I A  +++  ++  +  K+ 
Sbjct: 238 DFVTKLCRTLKCNHEEALENITKQSTNIKNLLAENKELKSIIADYEVKTMID--NGEKVK 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
           D+  +  I    D K +  +   L       +++L  +     A +L + + ++L+  N 
Sbjct: 296 DITIIKTIHDTDDFKYVNLLASKLT--TFDNVVVLFAVKTSDMAKLLFMCSRNILN-LNM 352

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             L + +  ++  G GGG    AQ GG N       +   
Sbjct: 353 GTLLKDAITLI-DGNGGGSNISAQGGGKNIGNLQSCMDYA 391


>gi|167757739|ref|ZP_02429866.1| hypothetical protein CLOSCI_00070 [Clostridium scindens ATCC 35704]
 gi|167664621|gb|EDS08751.1| hypothetical protein CLOSCI_00070 [Clostridium scindens ATCC 35704]
          Length = 384

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 155/394 (39%), Gaps = 31/394 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E+++      K EVV D+T F+ E GGQ  DTG        +++ DV+++ + IF   
Sbjct: 16  EAEVLDCRPVKDKYEVVLDRTAFFPEGGGQYADTGYLD----DVEVLDVKEREDVIFHTT 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           A      L     +   ID++ R      H+  H++   +           G  +  D  
Sbjct: 72  A----APLEIGRMVAGRIDWEQRFDRMQQHTGEHMVSGLIHRRF--GYDNVGFHLGSDYC 125

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D     PI    LK IE   N  + QNL +     ++++       + +    + +VR
Sbjct: 126 TMDFN--GPIPREALKEIEQEANRAVFQNLDIQISYPSKKELKELEYRSKIE--IDGQVR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V+V   D        C   HV  TGEI L+ +V  +  + G  RI  + G+RA      
Sbjct: 182 IVTVPGYD-----VCACCAPHVKRTGEIGLIKLVGMAKYKGG-ERISMLCGRRALLDYEI 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           +DE  K +++ L   +  V   VE + EE   L+   A  + +L     +   +      
Sbjct: 236 KDENAKRISALLCAKEYEVADAVERMKEEQASLKGKLASLQQKLLSYQAAQIPVEG-KVT 294

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
           +     +     + +M+ L  +  + +  +   + +     +I        R +   L R
Sbjct: 295 AVFDPSLSGNAPRDLMNLLLGR-GAVVCAVFTGTDDLGYRYVIG-----SGREDVRPLCR 348

Query: 858 LSAKVLGGGGGGGRPHMAQSG--GPNGNKADQAI 889
           +  +    G GGG+P MAQ    G    K  + I
Sbjct: 349 MLNEAFE-GRGGGKPEMAQGSMKGSE-EKIRELI 380


>gi|229185856|ref|ZP_04313029.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BGSC 6E1]
 gi|228597568|gb|EEK55215.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BGSC 6E1]
          Length = 411

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 143/396 (36%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG      +                           
Sbjct: 37  KDGNLYVILNETAFYPTGGGQPHDTGTLNSIAV---------LGVEEVDEEIRHFIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVIIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKGVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 408


>gi|242059365|ref|XP_002458828.1| hypothetical protein SORBIDRAFT_03g041025 [Sorghum bicolor]
 gi|241930803|gb|EES03948.1| hypothetical protein SORBIDRAFT_03g041025 [Sorghum bicolor]
          Length = 439

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/410 (21%), Positives = 150/410 (36%), Gaps = 59/410 (14%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  F  + +  G++ LPS  ++P  D    F  + +  F   F G     +    +
Sbjct: 14  AAQVRELFFSYSRGRGYKFLPSGPVLPVGDSKGPFHGA-LDHFNQAFLGPAPWSHGHAGS 72

Query: 64  --VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG--------------------Y 101
                C+       D         HH+   M                            Y
Sbjct: 73  AFSLHCINMSDMLVDF----SDPSHHSL--M-------DIFCNCFFEFFCLADSQCLSEY 119

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW 161
           F +  +                R+Y+T Y +D+E+ ++  K   LS  +++  T   N++
Sbjct: 120 FSKEMVT---------CKFSAGRIYVTCYADDDESREICMKF--LSKKQLLNFTCETNYY 168

Query: 162 SMAET-GPCGPCSEIFFDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL 219
                 GPCGPC++IF+   +     G    + +GE YIE+ N+V ++ ++++      L
Sbjct: 169 IGKNGCGPCGPCTKIFYLPSDNRKYHGHSAITIDGETYIELANIVSVEVDKEDDMFW-PL 227

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IV 270
                 +G+  E + T+LQ K + YD DLF  + +A  +    K +  +           
Sbjct: 228 VIKHAVSGINYECLVTLLQHKESFYDTDLFTKMFEAIRKYACNKVQPYSGNASVTCDVDA 287

Query: 271 NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALC 330
            +R+  DH+R  S   A        GR Y L  I RRA+         E      L  + 
Sbjct: 288 AYRLFADHVRIISCASAPQSQLGERGREYFLNFIDRRAIESGHQKLKIEAHFYPELLKVA 347

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE 380
             M       +  K  IEE L++E   + K LD     L      +   +
Sbjct: 348 VIMMDPIYPDLNIKDRIEEILKTEMLIYKKALDEIQHELPKSARKMKTKD 397


>gi|291546607|emb|CBL19715.1| Alanyl-tRNA synthetase [Ruminococcus sp. SR1/5]
          Length = 383

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/385 (18%), Positives = 140/385 (36%), Gaps = 29/385 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +++E   + +   ++ D++ FY E GGQ  DTG      ++                   
Sbjct: 20  KVLECREAKKGFHIILDESAFYPEGGGQPSDTGYLNDVKVKEVHEKEG--------ELLH 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                +     +   ID+  R  L   HS  H++   +    G      G  +  D +  
Sbjct: 72  YTDQPMEVGTEVQGRIDWARRFDLMQQHSGEHMVSGLIHEAYGYD--NVGFHMGSDTITI 129

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+    P+  A+L  IE   N  I ++  +       E+       +    +   +VR+V
Sbjct: 130 DLN--GPLDEAQLAEIERKTNQKIWEDTQIKIIYPTAEELEKIDYRSK--KELTGQVRIV 185

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                D        C GTHV+ TGEI ++ ++S    R G+ RIE I G+R   +L   +
Sbjct: 186 EFPGVD-----ICACCGTHVTHTGEIGMVKLLSVEKFREGV-RIEMICGKRVLDYLNMVN 239

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           ++   ++  L          VE + EE  +L+    +    +  ++    + A    +  
Sbjct: 240 DQNHQISVKLSAKMDKTAQAVERLQEENFRLKGQVGQLVDDMCRKE--AERYAGSGSVLI 297

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
            +  +D+  ++ + DA+ +  Q G   +   + +      +          +     +  
Sbjct: 298 FMDGMDADSVRKLADAVTQTCQ-GCCAVFSGNADGSYKYAMG-----EKDGDLRQFTKEM 351

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNK 884
              L  G GGG+P   Q       K
Sbjct: 352 NAKLN-GRGGGKPFFVQGSVQASEK 375


>gi|261408306|ref|YP_003244547.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus sp. Y412MC10]
 gi|261284769|gb|ACX66740.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus sp. Y412MC10]
          Length = 394

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 148/392 (37%), Gaps = 39/392 (9%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           +        +V ++T FY   GGQ  D G      +   + +  +    I          
Sbjct: 22  KLEREDGTYLVLEETAFYPHGGGQPCDLGWIDKIPVLDVVQEDGEILHKI---------E 72

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +   +D+  R     +HS  HLL      +           +  D    D+  
Sbjct: 73  RLPEREEVTCRLDWDRRFDHMQHHSGQHLLSAMCLQVCE--AETLSFHLGQDYATIDIAR 130

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              +   +L  +E  VND I  N  V   +++RE A A         K  D +R+V +E 
Sbjct: 131 -SDLPQHQLMMLELEVNDQIYLNRQVTNYVVSREQAAALPLVKQ--PKVTDDIRIVEIEG 187

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            +        CGGTHVS+TGEI ++ ++     + G  R+    G RA        E L 
Sbjct: 188 IEYN-----ACGGTHVSATGEIGMIKLLRAE-KQKGHMRLYFKCGYRALKEFNAGMEILG 241

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHKIADVNFMSHI 800
           SL++    ++  ++ R+ +  +E ++LQ      K +        L   +      + H+
Sbjct: 242 SLSARFNTAKEEILDRIAKWDQEQKQLQAELNAVKAENDAYLAGKLLAERQG--RLVKHV 299

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            ++   K+++++   L ++ +  +I+L   + + K  +                  +   
Sbjct: 300 FADKPMKDMQNLAAKLTEQAE--VIVLFASNSDHKVVLAQGG----ESGPACGAFLK--- 350

Query: 861 KVLGG--GGGGGRPHMAQSGGPNGNKADQAIA 890
           + L    G GGG   +AQ+G    +  + A+A
Sbjct: 351 QHLADYRGKGGGSDKIAQAG---FSTVEDAMA 379


>gi|229031279|ref|ZP_04187285.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1271]
 gi|228730037|gb|EEL81011.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1271]
          Length = 411

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 150/396 (37%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG  + D   + + ++  +     V     E     
Sbjct: 37  KDGNLYVILNETAFYPTGGGQPYDTGT-LNDIDVINVEEINGEIRHFIVEQLHTEE---- 91

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 92  ----VKGKINWERRFDHMQQHAAQHILSAAFWDHFNIPTIGFHLGKETVTIDLETDNLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P+ T  +N E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAAQIANKIVFENHPIRTLWVNLEEAKTLPLRKE--PTLTENIRVVIIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIIKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       +I     +S + 
Sbjct: 257 QQLNSSENDIPAKVAQLLTSQKENEKAIQTMNEKLLYAEANELLHQPLEIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 NNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 AIE-GKGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 408


>gi|226229209|ref|YP_002763315.1| putative alanyl-transfer RNA synthetase [Gemmatimonas aurantiaca
           T-27]
 gi|226092400|dbj|BAH40845.1| putative alanyl-transfer RNA synthetase [Gemmatimonas aurantiaca
           T-27]
          Length = 410

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 150/400 (37%), Gaps = 37/400 (9%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +G    V  D++ FY  +GGQ  D G      +   + + ++      V H + E   L 
Sbjct: 36  AGDGRIVYLDRSAFYPTSGGQPHDLGWLADISVVDVVDEDER------VAHHLAEPLGLP 89

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +V  +D   R      H+  HLL   ++   G              +         
Sbjct: 90  IGAMVVGLVDMARRFDHMQQHTGQHLLSALMADRYGWPTVSVHFGDITSTVDVAAA---E 146

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T A+L  IE   N +   NL V        +   + +     +  +  +R+V+++  D 
Sbjct: 147 VTPAQLIEIEQRANALALDNLEVSVSY----EDAETASGLRKASDRSGTLRIVTIDGLD- 201

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                + CGGTHV+ T EI  + +      R G  RIE + G RA        + L   A
Sbjct: 202 ----RSACGGTHVARTAEIGAVLLRRAERTR-GHTRIEFVCGHRAVQRARLDADLLTRAA 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHI 800
             L  +  +V   VE++ +  + L+    +          L   + +      V  +   
Sbjct: 257 RPLSAAPHDVPALVEQMQQRLQDLERELKRTTLALAAHDALAHWNAAIPDANGVRRVRLT 316

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           ++    K+ +++   L  +   G ++LV  +      +     +D+    +A    R + 
Sbjct: 317 VNGA-VKDSEALAQQLTAR--GGCVVLVTSATVGGVLLATA--DDVS--IDAGQQLRAAL 369

Query: 861 KVLGGGGGGGRPHMAQS---GGPNGNK-ADQAIAGVASFL 896
           + + GG GGG P +AQ    GG +GN    + +  VA  L
Sbjct: 370 QSV-GGRGGGSPRVAQGAVPGGSDGNAHLRETLDAVARML 408


>gi|229047304|ref|ZP_04192903.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH676]
 gi|228724046|gb|EEL75392.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH676]
          Length = 367

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 143/388 (36%), Gaps = 29/388 (7%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            ++T FY   GGQ  DTG          + D+                        +   
Sbjct: 1   MNETAFYPTGGGQPYDTGT---------LNDINVINVEEINGEIRHYIAEQLHTEDIEGK 51

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           I+++ R      H+A H+L  A                    +  +  +    T   ++ 
Sbjct: 52  INWERRFDHMQQHAAQHILSAAFWDHFNMPTIGFHLGKETVTIDLETENLHAET---VEK 108

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
                N I+ QN P+  + MN E+A              + +RVV +E  D        C
Sbjct: 109 AIQIANKIVFQNHPIRIQWMNLEEAKTLPLRKE--PTMTENIRVVMIENFDYN-----GC 161

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K+++  L  S+ 
Sbjct: 162 GGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKNVSKQLNSSET 220

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKEL 809
           ++  +V ++    ++ +        +L   + +       +I     +S + +    +E+
Sbjct: 221 DIPTKVAQLLTSQKENEKAIQTMNEKLLFAEANELLQHPTEIHAGILISKVFTNRSMQEI 280

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
             +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G GG
Sbjct: 281 AKLPAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALPTIE-GKGG 336

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G    A+ GG      D+ +  + S L+
Sbjct: 337 GNKKSARGGGKAIMSGDEFLNQLVSSLQ 364


>gi|330998666|ref|ZP_08322396.1| threonine/alanine tRNA ligase second additional domain protein
           [Parasutterella excrementihominis YIT 11859]
 gi|329576527|gb|EGG58035.1| threonine/alanine tRNA ligase second additional domain protein
           [Parasutterella excrementihominis YIT 11859]
          Length = 388

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 144/393 (36%), Gaps = 30/393 (7%)

Query: 502 VEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V     G+K  EVV D T FY E GGQ  D G      +                     
Sbjct: 21  VTSCREGKKGFEVVLDDTAFYPEGGGQPSDEGTLGEAKVIFVKRVGP--------EIVHY 72

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L    +++  ID++ R     NH+  H+    +       +   G  + PD +  D
Sbjct: 73  IDKPLEVGSTVIGKIDWERRFDNMQNHTCEHIFSGLVHQKYK--LENVGFHMDPDDITVD 130

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +    I    +  +E  VN  I Q++ +       E   A    +    + +  VR+V+
Sbjct: 131 FS--GEIPMESIPELEQLVNQAITQDIDLKIEFPTEEALEAMEYRSK--KELHGVVRIVT 186

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   D        C GTHV  +GEI +  I+  S  R G  R+  + G+RAR     + +
Sbjct: 187 IPGCD-----RCACCGTHVRRSGEIGMFKILDASKHRGGT-RVRFVAGERARRDYGWRVK 240

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           ++  +++        +        EE +      A+ + +  ++ ++   ++    +   
Sbjct: 241 EIAKVSALFSAKPHEIAKAAANFIEEGKAKDQKSAQ-RTERYLQFVASGLVSRNGLVKVF 299

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
             ++   ELK     L++K     I +     E   + +I  ++  L +F+     +   
Sbjct: 300 EEDLSPFELKRFAGMLKEKFPESSIGVFS-PIEGGFNYVIASSDPELPKFS-----KSLN 353

Query: 861 KVLGGGGGGGRPHMAQSGGP-NGNKADQAIAGV 892
             L  G GGGR  M Q     +    ++A   +
Sbjct: 354 AKLN-GRGGGRDGMVQGTYRVDKEAVEEAFDEI 385


>gi|225874002|ref|YP_002755461.1| threonyl and Alanyl tRNA synthetase/DHHA1 domain protein
           [Acidobacterium capsulatum ATCC 51196]
 gi|225794335|gb|ACO34425.1| threonyl and Alanyl tRNA synthetase/DHHA1 domain protein
           [Acidobacterium capsulatum ATCC 51196]
          Length = 422

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 145/373 (38%), Gaps = 18/373 (4%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +V  D++ FY  +GGQ  D G   A      +    V    E          +  L   
Sbjct: 36  WQVALDRSAFYPTSGGQPFDLGLLRATSRLGNVLELPVVAVEEDEQGEVWHFVQKPLIAG 95

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   +D+  R      HS  HLL    +  L +H            +  D     P+ 
Sbjct: 96  TQIEGLVDWPRRLDHMQQHSGQHLLSAVFAHELEAHTLSFHLGEEVSTIDLDC---GPLD 152

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            A L  IE   N+ IA N PV  R + R +A A  A+  L         +  +E ED   
Sbjct: 153 EATLVRIERIANEQIAGNRPVRVRQLPRSEAEAMLASGELRKLPERDGELRIIEIED--- 209

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
           +    CGGTHV++TG+I  L I     +  G+ R+  + G RA          L S A+ 
Sbjct: 210 YDRNACGGTHVNTTGQIGSLLIRGTEKVSRGV-RVSYVCGLRAVMAARQDAAILASTAAQ 268

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-----ADVNFMSHIISE 803
           L V   +V   VE +  E +    ++ K + +L     +   +       + ++  ++++
Sbjct: 269 LSVGVPDVPASVERLRSEAKAAVKVNQKLREELAHYQATQIAVEVPIQNGLRWVDRVMND 328

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            D+  L+ +  +L   +    I L+   + +   +++  + DL    +  D+ +      
Sbjct: 329 RDADYLRMLASSLAAAVPRT-IALLSCEQGQTVRLVLARSLDL--DLHCGDVMKAVLAR- 384

Query: 864 GGGGGGGRPHMAQ 876
            G  GGG P +AQ
Sbjct: 385 FGLRGGGSPGLAQ 397


>gi|213420684|ref|ZP_03353750.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 262

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 105/294 (35%), Positives = 158/294 (53%), Gaps = 32/294 (10%)

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MGSA  EL + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYD
Sbjct: 1   MGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAFRLYD 59

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+  D+   R +  +D   F  A+EEQR RAR              + ++    
Sbjct: 60  TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREA------SGFGADYNAMIRVD 112

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A++F GYD L                        ++  V A+   G+ VE   +GQ+  
Sbjct: 113 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVEAINAGQEAV 149

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV DQTPFYAE+GGQ+GD G   G G    + D QK       H   +  G L+   ++ 
Sbjct: 150 VVLDQTPFYAESGGQVGDKGELKGAGFTFAVDDTQKYG-QAIGHLGKLSAGALKVGDAVQ 208

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             +D   R ++ +NHSATHL+H AL  +LG+HV+Q GS ++   LRFD +H++ 
Sbjct: 209 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEA 262


>gi|329922834|ref|ZP_08278350.1| threonine/alanine tRNA ligase second additional domain protein
           [Paenibacillus sp. HGF5]
 gi|328941607|gb|EGG37892.1| threonine/alanine tRNA ligase second additional domain protein
           [Paenibacillus sp. HGF5]
          Length = 394

 Score =  141 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 148/392 (37%), Gaps = 39/392 (9%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           +        +V ++T FY   GGQ  D G      +   + +  +    I          
Sbjct: 22  KLEREDGTYLVLEETAFYPHGGGQPCDLGWIDKIPVLDVVQEDGEILHKI---------E 72

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +   +D+  R     +HS  HLL      +           +  D    D+  
Sbjct: 73  RLPEREEVTCRLDWDRRFDHMQHHSGQHLLSAMCLQVCE--AETLSFHLGQDYATIDIAR 130

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              +   +L  +E  VND I  N  V   +++RE A A         K  D +R+V +E 
Sbjct: 131 -SDLPQHQLMMLELEVNDQIYLNRQVTNYVVSREQAAALPLVKQ--PKVTDDIRIVEIEG 187

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            +        CGGTHVS+TGEI ++ ++     + G  R+    G RA        E L 
Sbjct: 188 IEYN-----ACGGTHVSATGEIGMIKLLRAE-KQKGQMRLYFKCGYRALKEFNAGMEILG 241

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHKIADVNFMSHI 800
           SL++    ++  ++ R+ +  +E ++LQ      K +        L   +      + H+
Sbjct: 242 SLSARFNTAKEEILDRIAKWDQEQKQLQAELNAVKAENDAYLAGKLLAERQG--RLVKHV 299

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            ++   K+++++   L ++ +  +I+L   + + K  +                  +   
Sbjct: 300 FADKPMKDMQNLAAKLTEQAE--VIVLFASNADHKVVLAQGG----ESGPACGAFFK--- 350

Query: 861 KVLGG--GGGGGRPHMAQSGGPNGNKADQAIA 890
           + L    G GGG   +AQ+G    +  + A+A
Sbjct: 351 QHLADYRGKGGGSDKIAQAG---FSTVEDAMA 379


>gi|330974797|gb|EGH74863.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 152

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 74/152 (48%), Positives = 101/152 (66%), Gaps = 2/152 (1%)

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LP  S+DTGMGLER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + 
Sbjct: 3   DGVLHPLPAPSVDTGMGLERVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASL 60

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           +V+ DH+RS  FLIADG+LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  E
Sbjct: 61  KVVADHIRSCGFLIADGVLPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAE 120

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           MGSA+PEL+Q +  IE  L+ E+E+F KTL++
Sbjct: 121 MGSAFPELVQQQSHIERVLKGEEEQFAKTLEQ 152


>gi|302337401|ref|YP_003802607.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta smaragdinae DSM
           11293]
 gi|301634586|gb|ADK80013.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta smaragdinae DSM
           11293]
          Length = 391

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/401 (20%), Positives = 153/401 (38%), Gaps = 31/401 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            ++  + + +  EV+ D+T FY E GGQ  DTG          + DV+K    +      
Sbjct: 18  AVLSSSKTDKGYEVLLDKTQFYPEGGGQPSDTGWI----GEQPLLDVKKVGSDVVHLLQN 73

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                   E  ++  +D+ +R      H+A H+L   L       ++     +  D L  
Sbjct: 74  RP-----AEGPVLCRLDWNHRFDYMQQHTAQHILSAVLYR--EFGINTLAVHLGEDFLTI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           +V   + I    L+ ++    +++ +NLP+ T   + E   +         K +  +R+V
Sbjct: 127 EVDR-EEIDEGVLEKVDFLAQELVCRNLPIETFWTDDEKVASFDLRRT--PKVSGHIRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +   D        CGG H S TGE++L+       IR G  RI+   G RA      + 
Sbjct: 184 RLGNYDA-----VACGGVHCSKTGEVLLIRRCGVERIR-GHMRIQWKAGGRAFRDYGEKM 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFM 797
           E +  L     V    +  R  ++  E ++L++     + +    +      + A  +F+
Sbjct: 238 ELVTRLCELNSVKSDELEERSRQLIAEQQRLKVTIESLRREQAAAEARNLSEQAAKASFL 297

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN--AVDL 855
           S      +   L++V DAL  + +  ++ L   ++     ++       L   +    +L
Sbjct: 298 SRTFVGQEKDFLRNVADALTGE-KPLLVALTNKTENGVQWLVAA-----LGGLDFPFNEL 351

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +     +  G GGG+  M Q  G N    +         L
Sbjct: 352 RKELLSAI-DGKGGGKAPMWQGIGSNPEGIEAFYERCRKAL 391


>gi|303258323|ref|ZP_07344326.1| putative alanyl-tRNA synthetase [Burkholderiales bacterium 1_1_47]
 gi|302858769|gb|EFL81857.1| putative alanyl-tRNA synthetase [Burkholderiales bacterium 1_1_47]
          Length = 388

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 141/393 (35%), Gaps = 30/393 (7%)

Query: 502 VEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V     G+K  EVV D T FY E GGQ  D G      +                     
Sbjct: 21  VTSCREGKKGFEVVLDDTAFYPEGGGQPSDEGTLGEAKVIFVKRVGP--------EIVHY 72

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L    +++  ID++ R     NH+  H+    +       +   G  + PD +  D
Sbjct: 73  IDKPLEVGSTVIGKIDWERRFDNMQNHTCEHIFSGLVHQKYK--LENVGFHMDPDDITVD 130

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +    I    +  +E  VN  I Q++ +       E   A    +    + +  VR+V+
Sbjct: 131 FS--GEIPMESIPELEQLVNQAITQDIDIKIEFPTEEVLEAMEYRSK--KELHGVVRIVT 186

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   D        C GTHV  +GEI +  I+  S  R G  R+  + G+RAR     + +
Sbjct: 187 IPGCD-----RCACCGTHVRRSGEIGMFKILDASKHRGGT-RVRFVAGERARRDYGWRVK 240

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           ++  +++        +        EE +      A+ + +  ++ ++   ++    +   
Sbjct: 241 EIAKVSALFSAKPHEIAKAAANFIEEGKTKDQKSAQ-RTERYLQFVASGLVSRNGLVKVF 299

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
             ++   ELK     L++K     I +    +     V+     +L        +++   
Sbjct: 300 EEDLSPFELKRFAGMLKEKFSESSIGVFSSIEGGFNYVIASSDPELPK------ISKSLN 353

Query: 861 KVLGGGGGGGRPHMAQSGGP-NGNKADQAIAGV 892
             L  G GGGR  M Q     +    ++A   +
Sbjct: 354 AKLN-GRGGGRDGMVQGTYRVDKKAVEEAFDEI 385


>gi|289524521|ref|ZP_06441375.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502239|gb|EFD23403.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 244

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 5/249 (2%)

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ+GD G       +L++ D     + +  H   V+ G +  +      +D 
Sbjct: 1   TPFYAEKGGQVGDKGWIETSTGKLEVLDTYYYHDVLIAHRVRVKSGYVSADDEAKAKVDL 60

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  +H++TH++H AL+ +LG H+ Q GS ++P+  RFD TH   I+  ++  IE 
Sbjct: 61  SRRNAIRRHHTSTHIVHEALTRVLGPHIRQAGSYVSPNYFRFDFTHFDAISRDDIVKIEQ 120

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N++I  N+ +     + E+A   GA A    KY DRVRV+ +       + + LCGG 
Sbjct: 121 IANEVIQANIKLNIFETSMEEAKKIGAKAFFDEKYGDRVRVIQIPG-----YCAELCGGL 175

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV++TG+I L+ IV E SI +G+RRI A+ G  A SH     + +K L     V  G++ 
Sbjct: 176 HVNATGDIGLIKIVEEESIGSGLRRITALAGMAAVSHYQELFDLVKDLTLISGVEAGSLK 235

Query: 758 GRVEEIWEE 766
            +  +++++
Sbjct: 236 EKFTDVFQD 244


>gi|242399764|ref|YP_002995189.1| Alanyl-tRNA synthetase-related protein [Thermococcus sibiricus MM
           739]
 gi|242266158|gb|ACS90840.1| Alanyl-tRNA synthetase-related protein [Thermococcus sibiricus MM
           739]
          Length = 409

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 87/409 (21%), Positives = 166/409 (40%), Gaps = 46/409 (11%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
              KV +  D+T FY E GGQ GD G   GDG R+++  V+ K +    H   V+  I  
Sbjct: 25  KDSKVRLKLDRTIFYPEGGGQPGDIGIIKGDGFRVEVEKVEGKED--IWHEGKVKGRIPE 82

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L +D++ R +    H+  H+L   L  +  S  +  G  I P+  + ++   + 
Sbjct: 83  VGEEVELELDWEWRYENMRQHTGQHILSAILKKMYNSDTT--GFQIFPEYNKIEINFDEE 140

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRVRVVSVEYED 685
           +T   + + E   N+++  NLPV              A    L      ++R+V +   D
Sbjct: 141 LTWEHILAAEFEANEVVWDNLPVEVEEYEELPEEVHNALRKDLSKNVQGKIRLVKIPNID 200

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   CGGTHV +TGE+  + +++       I RIE   G RA  +L    E     
Sbjct: 201 -----LIPCGGTHVKNTGEVGFIKVLNFYKKTKNIWRIEFACGYRALIYLDKLLEDYWRS 255

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHI 800
            + +      ++ R++E  +   +L+    + + +L             +I  +  +S  
Sbjct: 256 LNEMSNKNRPLLERMQEFKQLLEELEGEKDQLRKELWEWKSKALLQEAEEINGIKIIS-F 314

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS- 859
           +   + K+ ++ +    +K    ++++VG +      +L    ++ ++R +  +L R   
Sbjct: 315 LDTWEMKDAQAFIVYFIEKNPKTVVLIVGSN-----YLLFAKNKN-IERISMNELMREVL 368

Query: 860 ---------AKVLGGGGGGGR-PHMAQSGGPNGNKADQAIAGVASFLKK 898
                    +++L  GGG  R P             ++ I     FLK+
Sbjct: 369 NEVGGGGGGSEILARGGGFKRSP-------------EEVIEIAKKFLKE 404


>gi|167950023|ref|ZP_02537097.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 139

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           + + G+I L  I+ E+ I AG+RRIEA+TGQRA   +   +E++    + LK S+ ++  
Sbjct: 1   MKAVGDIGLCKIIVETGIAAGVRRIEAVTGQRAIEWMEADEERVLRTVALLKGSRDDLEE 60

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVM 813
           +V ++ E  RKL+    + K +L          S   +A +  ++  +   DSK L+  M
Sbjct: 61  KVMQLLERNRKLEKELEQLKGKLASAAGSDLASSAEDVAGIKVLAATLEGADSKSLRETM 120

Query: 814 DALQKKIQSGIIMLVGISK 832
           D L+ K+ S +I+L  I+ 
Sbjct: 121 DQLKNKLGSAVILLAAING 139


>gi|331091305|ref|ZP_08340145.1| hypothetical protein HMPREF9477_00788 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404466|gb|EGG84010.1| hypothetical protein HMPREF9477_00788 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 387

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 154/383 (40%), Gaps = 35/383 (9%)

Query: 500 EIVEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
             VE     +K   VV ++T F++E GGQ  DTG   G    +++ DVQ+K   ++    
Sbjct: 17  ASVESCEKEEKYYKVVLNRTAFFSEGGGQSADTGTLDG----VRVFDVQEKDGILYH--- 69

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            +    L    ++   ID++ R      HS  H++   +        +  G  +  D + 
Sbjct: 70  -MTEKPLEQGKTVTGKIDWEERFSKMQQHSGEHIVSGLIHR--KYGYNNVGFHLGQDTVT 126

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D      +T  +L+ IE   N  + +NL +      +E+       + +      ++R+
Sbjct: 127 MDF--DGVLTKEQLREIELLANGAVVKNLDIQVDYPTKEELHTIEYRSKIE--IEGQIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V+++  D        C   HV  TGEI L+ + +  + + G+ RI  + G RA +    +
Sbjct: 183 VTIDGYD-----VCACCAPHVKKTGEIGLIKLTNVQNYKGGV-RITMLCGFRALADYNEK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +  ++ ++  +   +  +   VE++ EE  +L+   A  + +L     S  +      + 
Sbjct: 237 EASVRKVSVLMSAKENEIDEAVEQLKEEKAQLKNEIALLQDKLLRSKASRIEPGQET-VC 295

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
              SE+     + +++ L +K      +  G   E    V+   + D           R 
Sbjct: 296 LFDSELSGNAPRELVNLLLEKDVKICGVFFGNDSEGYRYVVGSRSVDT----------RP 345

Query: 859 SAKVLG---GGGGGGRPHMAQSG 878
            AK L     G GGG+P M Q  
Sbjct: 346 IAKSLNETFSGRGGGKPEMVQGS 368


>gi|153814088|ref|ZP_01966756.1| hypothetical protein RUMTOR_00297 [Ruminococcus torques ATCC 27756]
 gi|317499897|ref|ZP_07958133.1| hypothetical protein HMPREF1026_00075 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087880|ref|ZP_08336805.1| hypothetical protein HMPREF1025_00388 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848484|gb|EDK25402.1| hypothetical protein RUMTOR_00297 [Ruminococcus torques ATCC 27756]
 gi|316898614|gb|EFV20649.1| hypothetical protein HMPREF1026_00075 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409575|gb|EGG89016.1| hypothetical protein HMPREF1025_00388 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 419

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 143/384 (37%), Gaps = 37/384 (9%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV-------HHA 558
            +G+  E+  D+T F+ E GGQ  DTG            D   + +   +          
Sbjct: 40  KAGEYYEIELDRTAFFPEGGGQYADTGVLYMADDDTCGLDETARKKVQVLDVRERNGRIF 99

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            +  G +  + ++  +ID++ R      H+  H++   +        +  G  +  +   
Sbjct: 100 HITDGFIEAKTAVKGSIDWEERFMKMQQHTGEHIVSGLIH--AAYGYNNVGFHLGSEDCT 157

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D      IT  EL+ IE   N  + +NL V T    +E+       + +      +VR+
Sbjct: 158 MDF--DGEITEEELRRIEAEANKAVWKNLKVFTHYPKKEELSQIEYRSKIE--IEGQVRI 213

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           + +   D        C   HV+ TGEI L+ +V     + G+ RI  + G RA S  + +
Sbjct: 214 IEIPGYD-----CCACCAPHVTYTGEIGLIKLVQAQRYKGGV-RITMLCGVRAFSDYVRK 267

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNF 796
           + + K ++  L   +  +   V  + EE  +L  +L   +R+L     D+       V  
Sbjct: 268 EAQAKEISRLLCAKENEIADAVAHLAEETNQLKYELAEKERRLVKAYADMISESKDAVCI 327

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
            +          ++ +M+ +         +  G  K+    VL    +D           
Sbjct: 328 FTEEFGG---DSMRMLMNYVLDAGHCICAVFFGNEKDGYRYVLGSRQQD----------V 374

Query: 857 RLSAKVLG---GGGGGGRPHMAQS 877
           R  AK       G GGG+P M Q 
Sbjct: 375 REMAKEFNKRFDGRGGGKPEMVQG 398


>gi|260588008|ref|ZP_05853921.1| putative alanyl-tRNA synthetase [Blautia hansenii DSM 20583]
 gi|331082422|ref|ZP_08331548.1| hypothetical protein HMPREF0992_00472 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541535|gb|EEX22104.1| putative alanyl-tRNA synthetase [Blautia hansenii DSM 20583]
 gi|330400908|gb|EGG80509.1| hypothetical protein HMPREF0992_00472 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 392

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 85/409 (20%), Positives = 162/409 (39%), Gaps = 41/409 (10%)

Query: 496 VQQGEIV--EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           ++  E V      +G   E V D+T F+ E GGQ  DTG    +   +Q+ DVQ++   I
Sbjct: 12  IKDFEAVVLSCIPNGNHFEAVLDRTAFFPEGGGQCADTGVLHIENREIQVFDVQERNGEI 71

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
                      +    +++  +D+Q R      H+  H++   +           G  + 
Sbjct: 72  IHFI----DKEILPGQTVIGELDFQERFSKMQQHTGEHIISGIVHRRF--GYENVGFHLG 125

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
                  + +  P+T  EL+SIE   N ++A+N  +       E+       +    +  
Sbjct: 126 --KEEVTMDYDGPLTPEELRSIEYEANQVVAENREIRAYFPGTEELEKIPYRSK--KELQ 181

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
            ++R+V ++  D        C   HV +TG + L+ I +    + G+ R+    G RA  
Sbjct: 182 GKIRIVEIQDCD-----ICACCAPHVKTTGNVGLIKITNAIRYKGGM-RLWITCGMRALE 235

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA- 792
               ++  +  +++ L   Q  V   V+ + EE ++L+   AK + +L +  L   K+  
Sbjct: 236 DYNQKEASVVQISNMLSAKQQEVTDAVKRLTEEIQQLKEKAAKMQERLVMGYLESEKVVL 295

Query: 793 ----DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
               + N +     E+D+  +++ ++A  +  +      VG  K+     ++  + D   
Sbjct: 296 KENPNANLLLFE-KELDAMAMRNFVNAGMELTKGVCGAFVGDEKQG-FRYVLGSSGD--- 350

Query: 849 RFNAVDLARLSAKVLG---GGGGGGRPHMAQSG--GPNGNKADQAIAGV 892
                   R   K L     G GGG+P M Q    G    K  + +  V
Sbjct: 351 -------IREIGKKLNAAFQGKGGGKPPMIQGSLVGEE-EKIREFLEKV 391


>gi|298526029|ref|ZP_07013438.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298495823|gb|EFI31117.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
          Length = 100

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 50/92 (54%), Gaps = 11/92 (11%)

Query: 2  SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1  MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59

Query: 62 TTVQKCVRAGGKHNDLDNVGR---TNRHHTFF 90
          T++QKC+R      D+D VG    T R   FF
Sbjct: 60 TSIQKCIRT----PDIDEVGIPPGTTR---FF 84


>gi|116620597|ref|YP_822753.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|116223759|gb|ABJ82468.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
          Length = 386

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 146/398 (36%), Gaps = 36/398 (9%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           IV+ +  GQ V +  D++ FY  +GGQ  D G   G  +   + +  + A  +       
Sbjct: 19  IVDRSPDGQTVYL--DRSAFYPTSGGQPFDLGSIAGIAVVEVVDEDDRIAHRL------- 69

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L T   +   ID+  R      HS  HL+      + G              +  +
Sbjct: 70  -AAPLTTGEEVTARIDWARRFDHMQQHSGQHLISAVFEELFGLRTVSFHLGAESATIDLE 128

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
                P+    L   E   N +I +N P+  R  + ++A           +    +R+VS
Sbjct: 129 ---GGPVDPGTLPRAELRANQLIYENRPLDVRFEDAKEAQ---GLRKASER-EGMLRIVS 181

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E  D      + CGGTHV +TGEI ++ +     IR    R+E + G RA        E
Sbjct: 182 IEGLD-----RSACGGTHVRATGEIGVILLRKVEKIRQAA-RVEFVCGGRAVKRARADFE 235

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV------EDLSCHKIADV 794
            L  ++     +   V G V    E  +  +    K +L+L           +      +
Sbjct: 236 ALTKVSQVFSAALDEVPGMVAAQVEAAKAGEKARRKVELELAAYQGKDLYQATAPGPDGM 295

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             ++  +   + ++L++V      +     + L  +      SVL+  + D     +A  
Sbjct: 296 RRVTQRLERGNLEDLRAVAQNFTAQ--PMAVFLATLQ--DPPSVLLAASAD--SGVDAGK 349

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + + +      G GGG   +AQ   P+     + +  V
Sbjct: 350 VLKAALTA-ASGRGGGNARIAQGSVPDAGALQKVVQAV 386


>gi|225572851|ref|ZP_03781606.1| hypothetical protein RUMHYD_01042 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039777|gb|EEG50023.1| hypothetical protein RUMHYD_01042 [Blautia hydrogenotrophica DSM
           10507]
          Length = 384

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 145/378 (38%), Gaps = 29/378 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           ++V+     +  EV  DQT FY E GGQ  DTG       + ++ +V  K   ++     
Sbjct: 19  KVVQCRPGKKGYEVALDQTAFYPEGGGQPYDTGT----LGKAKVLEVHSKDGEVWHDTDC 74

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L     +   ID+  R  L   HS  HL+   +           G  +  D +  
Sbjct: 75  ----PLEVGSQVEGNIDWDRRFDLMQQHSGEHLVSGLIHE--KYGYDNVGFHMGTDRITI 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D      +   +L  +E+ +N++I +N+   TR++   +            + +  VR+V
Sbjct: 129 DFN--GIVPEEDLPKLEEKINEVIWENI--QTRVLYPTEEELKQLCYRSKKELSGWVRLV 184

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                D        C G HV+ TGEI ++ ++S    R G+ R+E I+G+R   +L    
Sbjct: 185 EFPGTD-----LCACCGLHVTYTGEIGMVKLLSVQKFREGV-RMEMISGKRVLDYLNEIS 238

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           E+   ++  L    G     V  + EE  +L+      + +   ++      A    +  
Sbjct: 239 EQNHQISVQLSAKPGETAAAVRRLAEENFRLRGRVMDMEAEAFEQEARRRLAAGDVLLFE 298

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
               +++  ++ +  A+ +  Q G   +   S +      I          +  +L R  
Sbjct: 299 K--GMEADSVRRLATAVMETCQ-GRCAVYSDSGDGSFKYAIG-----EKGGDLRELVRQM 350

Query: 860 AKVLGGGGGGGRPHMAQS 877
            + L  G GGG+P   Q 
Sbjct: 351 NQALN-GRGGGKPFFVQG 367


>gi|167772611|ref|ZP_02444664.1| hypothetical protein ANACOL_03990 [Anaerotruncus colihominis DSM
           17241]
 gi|167665089|gb|EDS09219.1| hypothetical protein ANACOL_03990 [Anaerotruncus colihominis DSM
           17241]
          Length = 391

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 139/372 (37%), Gaps = 34/372 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
               V  D+T FY E GGQ GDTG        +++ D Q   +G   H      G L   
Sbjct: 33  DAWSVTLDRTAFYPEGGGQPGDTG----ALGGVRVCDTQDGPDGEIRHI---TDGPLAVG 85

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++   ID+  R     +H+  H+L   L ++    V   G  +  D +  D++    ++
Sbjct: 86  TAVHGQIDWPVRFSHMQHHTGEHILSGLLHSLY--GVDNVGFHMGRDTVTIDLSR--ELS 141

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             EL   E   N+ + +++PV     +     A    +      +  VR+V+V   D   
Sbjct: 142 WDELLRAEQLANETVWRDVPVRIEYPDAGALAALAYRSK--KALSGAVRIVTVPGAD--- 196

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C GTH + TGE+ ++ ++S    + G  R+    G RA      ++  + ++++ 
Sbjct: 197 --VCACCGTHTARTGEVGIIKLLSAQRYKGGT-RVWLCCGGRALKDYEAKNASVHAISAL 253

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
           L    G V G    +  E   L+   +  + QL        +             ++  +
Sbjct: 254 LSAKPGEVAGAAARMQRENEALRQRLSALRRQLFAYRAKEVE-QGARCAVLFEEAMEPAD 312

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG---G 865
           L+ +  AL  +     + L G   ++       V  +  D        R     L     
Sbjct: 313 LRHLCMALTSRCGVATV-LAGGEGDR---WSYAVGSEQTD-------VRPLGAALNETFD 361

Query: 866 GGGGGRPHMAQS 877
           G GGG+P + Q 
Sbjct: 362 GRGGGKPGLVQG 373


>gi|153811258|ref|ZP_01963926.1| hypothetical protein RUMOBE_01650 [Ruminococcus obeum ATCC 29174]
 gi|149832756|gb|EDM87840.1| hypothetical protein RUMOBE_01650 [Ruminococcus obeum ATCC 29174]
          Length = 383

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 147/378 (38%), Gaps = 30/378 (7%)

Query: 502 VEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V E   G+K   ++ DQT FY E GGQ  D G        +++ +V +K   I  +    
Sbjct: 21  VLECREGKKGYEIILDQTAFYPEGGGQPYDLGI----LNDVEVLEVHEKDGEIIHYTKEA 76

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                     +   ID+  R  L   HS  H++   +    G      G  ++ D +  D
Sbjct: 77  IEA----GSDVTGKIDWHRRFDLMQQHSGEHIVSGLVHEAYGYD--NVGFHMSSDVITVD 130

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           ++    ++ A+L  IE   N  I +N  V     +RE+       +    +   +VR+V 
Sbjct: 131 LS--GVLSEAQLAEIEVETNRKIWENSEVEITYPSREELDKLDYRSK--KELTGQVRLVR 186

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
               D        C GTHV+ TGEI  + I++  +   GI R+  I G+R   +L   ++
Sbjct: 187 FPGSD-----LCACCGTHVTHTGEIGAVKILTVENFHEGI-RLTMICGKRVMDYLNMVND 240

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           + + ++  L    G     V  + +E  +L+        +L   +    + A    + H 
Sbjct: 241 QNRQVSMKLSAKIGETAAAVARLQDENFRLKGQVNHMFDELCTVEAKNWEDAGSVLLFH- 299

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
              +++ +++ + DA+ +K  SG   +   + +      I          +     +   
Sbjct: 300 -EGLEADQVRRMADAVMQKC-SGCCAVFSANGDGSYKYAIG-----EQNGDLRQFTKEMN 352

Query: 861 KVLGGGGGGGRPHMAQSG 878
             L  G GGG+P   Q  
Sbjct: 353 AALN-GRGGGKPFFVQGS 369


>gi|14521955|ref|NP_127432.1| alanyl-tRNA synthetase related protein (fragment) [Pyrococcus
           abyssi GE5]
 gi|5459175|emb|CAB50661.1| alaRS-like alanyl-tRNA synthetase related protein (fragment)
           [Pyrococcus abyssi GE5]
          Length = 405

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 148/406 (36%), Gaps = 29/406 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +I +  + G K+EV   +T FY   GGQ GD G   GDG  + + D  ++   I+     
Sbjct: 18  KISDLTIKGDKIEVSLTETIFYPRGGGQPGDKGKIRGDGFEIIVEDTVERDGEIWHV-GK 76

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +          + L +D++ R      H+  H+L   L       +  +G  I  D  + 
Sbjct: 77  LNGRTPEVGEEVELELDWEWRYGNMQMHTGQHILSAVLKKRY--DLDTSGFNIFGDYAKI 134

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           +V     +    ++  E   N +I  +LPV                         ++R+V
Sbjct: 135 EVN--GELNWEMIEEAELEANKVIIDDLPVRVEEYEVLPKGVVEKLRKYIPNIKGKIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +            CGGTHV ST E+ ++ ++          RIE   G RA   L    
Sbjct: 193 RIGEN----FDLTPCGGTHVKSTREVGVIKVLRFYKKSKDTWRIEFTCGFRAIKKLNEIL 248

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADV 794
           +   S    +      +  RV E+ E    L+      + ++             +I   
Sbjct: 249 KDYWSALDAMPNKNPPLSERVREVLESVESLEEKVDSMRKEVWKWKEESLLGRSIEIGHY 308

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV- 853
           N ++  + + D K+ ++      K     I++L          V++   E++     ++ 
Sbjct: 309 NVVT-FVEKWDIKDAQAFAVDFVKNNPGTIVVLASED-----YVILARNEEVEVSMKSLL 362

Query: 854 -DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            DL +       GG GGG  ++A+  G    + +  I  V   L++
Sbjct: 363 EDLIKE-----FGGKGGGTDNLAR--GKIEAEPEDVIDFVVDRLRE 401


>gi|308070856|ref|YP_003872461.1| Predicted metal-dependent hydrolase [Paenibacillus polymyxa E681]
 gi|305860135|gb|ADM71923.1| Predicted metal-dependent hydrolase [Paenibacillus polymyxa E681]
          Length = 391

 Score =  134 bits (336), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/403 (18%), Positives = 145/403 (35%), Gaps = 31/403 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
              I +      K  V+ ++T FY   GGQ  DTG   G  +   + +            
Sbjct: 16  DTHITQSMERDGKYLVMLEETAFYPHGGGQPCDTGTIQGVRVLDVVLEDGD--------- 66

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              +   L  +  +   +D++ R      HS  HLL      +L          +  +  
Sbjct: 67  IWHQVERLPEDRKVACQLDWERRFDHMQQHSGQHLLSAVCLELL--GARTESFHLGQEYA 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             DV     IT A+L +IE  VN  I  N  + +  +  E             K  + +R
Sbjct: 125 TIDVNC-SDITPAQLSAIEQEVNQQIYSNRSIKSYFVTHEQLQDIPLVKT--PKVTEDIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  +        CGGTHV+ TGEI ++  +     + G+ RI    G RA      
Sbjct: 182 IVEIEGIEYN-----ACGGTHVAQTGEIGIIKCLKWE-KQKGMARIHFKCGARALQDFND 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVN 795
             + L  L++     + +++ R E+  +E+++L+      + +            +   +
Sbjct: 236 SVQILDVLSTKFNTGRKDILTRFEKWEQEHKQLKAQVELLQEENASYQAKELLSAVQG-H 294

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            ++H+  +   ++++ +   L  +    +++L   + E K  +      +          
Sbjct: 295 VLAHVFEQKSLQDMQQLATKLTAEHD--LLVLFATTAENKILLA----HNGTQSVACGAF 348

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV-ASFLK 897
            + +      G GGG    AQ+  P+              F++
Sbjct: 349 LKENLGAFH-GKGGGSNQSAQAAFPSREDLLNFFETAQRQFIQ 390


>gi|197303753|ref|ZP_03168790.1| hypothetical protein RUMLAC_02483 [Ruminococcus lactaris ATCC
           29176]
 gi|197297273|gb|EDY31836.1| hypothetical protein RUMLAC_02483 [Ruminococcus lactaris ATCC
           29176]
          Length = 397

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 140/373 (37%), Gaps = 30/373 (8%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
                 E+V DQT F+ E GGQ  DTG         ++ DVQ++   I           L
Sbjct: 34  KKENYYEIVLDQTAFFPEGGGQYADTGY----LGDAKVLDVQEQEGQILHRTDQ----EL 85

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   +D++ R      H+  H++   +           G  +  +    D +   
Sbjct: 86  PVGEKVTGQLDWELRFMKMQQHTGEHIVSGIVHERY--GYENVGFHLGNEDCTMDFS--G 141

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            I   +L+ IE   N  + +NL +     ++E+       + +      +VRVV V   D
Sbjct: 142 EIPVEDLQEIEFRANQAVWENLKIQILYPSKEEEKEMTYRSKIE--ITGQVRVVIVPGYD 199

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   C   HV  TGEI L+ +V     + G+ R+  + G RA +    + ++ K +
Sbjct: 200 A-----CACCAPHVDFTGEIGLIKLVGMQRYKGGV-RVTMLCGGRAMADYALKQKQAKEI 253

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISEV 804
           ++ L   +  +   V  + +E  + +   A+++ +L        +I      +      +
Sbjct: 254 SAMLCAKENELTDAVAHLQKELAEKKTELAEKEQELI--RCKAEQIPESEQIVCIFPEGI 311

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
               L+ +M+A+ +K +    +  G        V+           +  ++A+       
Sbjct: 312 QGDSLRILMNAVLEKNRKLCAVFSGNDAAGYRYVIGS------RDVDVRNMAKELNAAFE 365

Query: 865 GGGGGGRPHMAQS 877
            G GGGRP M Q 
Sbjct: 366 -GRGGGRPEMVQG 377


>gi|154504605|ref|ZP_02041343.1| hypothetical protein RUMGNA_02111 [Ruminococcus gnavus ATCC 29149]
 gi|153795087|gb|EDN77507.1| hypothetical protein RUMGNA_02111 [Ruminococcus gnavus ATCC 29149]
          Length = 389

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 137/374 (36%), Gaps = 28/374 (7%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
              G+  ++V D+T F+ E GGQ  DTG         ++ DVQ+K   IF          
Sbjct: 23  VPDGENWQIVLDRTAFFPEGGGQYADTGI----LGSARVLDVQEKDGVIFHR----TDAP 74

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L     +   ID+  R      H+  H++   +    G      G  +  +    D    
Sbjct: 75  LSVGDCVEGRIDWDLRFMKMQQHTGEHIVSGLVHKRFGYQ--NVGFHLGSEDCTMDFN-- 130

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
             IT  E++ IE   N  + +NL     +   +             +   +VR+V++   
Sbjct: 131 GEITKEEIREIEWEANRAVVRNLE--VEVTYPDQKALQTLVYRSKIEIEGQVRIVTIPEY 188

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        C   HV  TGEI  + +      + G+ R+  + G RA      + E    
Sbjct: 189 D-----VCACCAPHVKQTGEIGQIRLTGVQRYKGGV-RVTMLCGFRALEDYRRKAESTGC 242

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           ++S L V + +V   VE++  +  + +  +A+ K  +               +     ++
Sbjct: 243 ISSALCVKEEDVAQGVEKLKNDCTEWKQRYAQLKRDMLAIRAE-RLAGQSEDVIVFADDL 301

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           + +EL+ +M+ +       I    G  +E     +I          +   LA+   +   
Sbjct: 302 EGEELRILMNLVLD-HGKRICAAFGGDEEHGFRYVIG-----SRILDMRPLAKELNETFH 355

Query: 865 GGGGGGRPHMAQSG 878
            G GGG+P M Q  
Sbjct: 356 -GRGGGKPEMVQGS 368


>gi|315648430|ref|ZP_07901529.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus vortex V453]
 gi|315276124|gb|EFU39470.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus vortex V453]
          Length = 393

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 145/385 (37%), Gaps = 35/385 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +  I ++      + +V ++T FY   GGQ  D G      +   + +       +    
Sbjct: 16  ETRITQKLEREDGIYLVLEETAFYPHGGGQPCDLGWIDKIPVLDVVLEEGAILHKV---- 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                     +  +   +D+  R     +HS  HLL      +           +  D  
Sbjct: 72  -----EFFPEKEEVGCHLDWDRRFDHMQHHSGQHLLSAMC--LEAFQAETLSFHLGQDYA 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             DV  S  ++ AEL  +E  +ND I  N  V    ++RE A           K  D +R
Sbjct: 125 TIDVARSG-LSQAELMMLELEINDQIYLNRKVSNYFVSREQAAVLPLVK--QPKVTDDIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  +        CGGTHVS+TGEI ++ ++     + G  RI    G RA      
Sbjct: 182 IVEIEGIEYN-----ACGGTHVSATGEIGMIKLLRAE-KQKGHVRIYFKCGYRALKEFNI 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHKIADV 794
             E L SL++    ++  +  R+ +   E ++LQ   +  K +      E L   +    
Sbjct: 236 GMEILGSLSARFNTAKEEIPDRIAKWDLEQKQLQAELSAVKAENDVYLAEKLLADRQG-- 293

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             + H+ ++   K+++++   L ++  + +I L     + K  +                
Sbjct: 294 RLIQHVFADKPLKDMQNLTAKLTEQ--ADVIALFVSKTDHKVVLAQG-----ERGPACGA 346

Query: 855 LAR-LSAKVLGGGGGGGRPHMAQSG 878
             +   A    GG GGG   MAQ+G
Sbjct: 347 FFKLHLADY--GGKGGGSDKMAQAG 369


>gi|41615006|ref|NP_963504.1| hypothetical protein NEQ211 [Nanoarchaeum equitans Kin4-M]
 gi|40068730|gb|AAR39065.1| NEQ211 [Nanoarchaeum equitans Kin4-M]
          Length = 499

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 95/517 (18%), Positives = 202/517 (39%), Gaps = 47/517 (9%)

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQ 402
            + I E +  E +++ +T  +   L++     +    +     V F+LY + G+  D++ 
Sbjct: 1   MIPINEIILEEYKKYKQTEKQFKPLIEKTREKIKNLSDEEKAKVLFELYISKGITPDLI- 59

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
                          F + LE+ R +++A                   KY  T+F+ +  
Sbjct: 60  --------VDHIPEKFYELLEKHRQKSKAEKHKKEIDID-------VSKYKPTEFLFWKD 104

Query: 463 L------RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                       +++D  +  +        G       I+ +  +V    +GQ  +    
Sbjct: 105 TFLKFCEANLLGIEKDYAIFDKTVFYPTMGGQEHDTGYIIDRDSLVYLYKTGQYSK---Y 161

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
             PFY +      D      + + +++ DV KK + I      +E+         VL ID
Sbjct: 162 NIPFYKDVYEYYKDYQYKKEEIVFVRVIDVIKKGKVILHKVDDIEKLKKIENP--VLLID 219

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +  R QLS NH+A H++      + G H+ Q G+    +    D+TH K ++  EL+ +E
Sbjct: 220 FDRRLQLSRNHTAVHIITGIARKLFGEHIWQAGAEKKYEYATIDLTHYKNLSDEELELLE 279

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALC 694
              N I+ +  P+    + + +A       +          +R+V +E  D        C
Sbjct: 280 KEANKIVMEMRPIKKYFLPKNEAEKRFGFRIYQGGVVPEKILRIVEIEDLD-----VEAC 334

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            GTH+ +T ++  + I++   I     RI   TG +A   ++ +D+ LK ++   K    
Sbjct: 335 SGTHLDNTIQVGYIKILASKKISDNTIRIYLTTGNQAVKEIIKRDKILKEISKITKTDID 394

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
           N    V++ ++ ++ ++  +       +   L   KI +  ++  +   +   EL  ++ 
Sbjct: 395 NTPIAVKKFFDNWKAMEKKYDSLL--KDYFRLIQEKINNGEYIIKVSDSL---ELSDLIK 449

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVT-EDLLDRF 850
            ++K I    ++L         +  + V  +D +++ 
Sbjct: 450 LIKKLIDLDCVVLYNK------NYAVGVKCKDQIEKL 480


>gi|253580472|ref|ZP_04857737.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848202|gb|EES76167.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 390

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 140/382 (36%), Gaps = 37/382 (9%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           +VE     +   V+ D++ FY E GGQ  D G      +                     
Sbjct: 28  VVECREQKKGYAVILDESAFYPEGGGQPSDVGTLGDAKVTEVHEKDG--------ELLHY 79

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L     +   ID+  R  L   HS  H++   +           G  +  D +  D
Sbjct: 80  TDKALEVGAKVEGKIDWVRRFDLMQQHSGEHMVSGIIHE--KYGYDNVGFHMGSDVITVD 137

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +     +  ++L  IE  VN+ + ++  VV    + E+       +    +   +VR+V+
Sbjct: 138 LN--GMLDDSQLAEIEREVNERVWEDREVVITYPDAEELKTIDYRSK--KELTGQVRIVT 193

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
               D        C GTHV+ TGEI ++ ++S      GI R+E I G+R   +L   +E
Sbjct: 194 FPGVD-----VCACCGTHVTHTGEIGMVKLLSVVKFHDGI-RMEMICGKRVLDYLNMVNE 247

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           +   ++  L          V+ + +E  +++   A+ + ++   +    + A    +   
Sbjct: 248 QNHQISMKLSAKMDRTADAVQRLQDENFRMKGQVARMEEEMFRAEAKKWEGAGSVLIFK- 306

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV-VTEDL---LDRFNAVDLA 856
              +++  ++ + DA+    + G   +   +++      +  +  DL       NA    
Sbjct: 307 -EGLEADSVRKLADAVMNTCE-GCCAVFSRNEDGSYKYAMGEIDGDLRQYTKEMNAA--- 361

Query: 857 RLSAKVLGGGGGGGRPHMAQSG 878
                    G GGG+P   Q  
Sbjct: 362 -------LNGRGGGKPFFVQGS 376


>gi|291563576|emb|CBL42392.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [butyrate-producing bacterium
           SS3/4]
          Length = 389

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 145/389 (37%), Gaps = 38/389 (9%)

Query: 495 IVQQGEIVEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           I      V     G+K   V  DQT FY E GGQ  DTG   G  +              
Sbjct: 11  IRTFEAKVLSCEKGKKGYEVALDQTAFYPEGGGQPYDTGILGGAHVTAVHDVKG------ 64

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
                      L    ++   I++  R Q    HS  HL+   +           G  + 
Sbjct: 65  --EIVHYTDAPLAVGETVTGEINWDRRFQNMQGHSGEHLVSGLIH--AKYGYDNVGFHMG 120

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            + +  D+     +   +L  IE   N II ++  +     + E+       +    +  
Sbjct: 121 TEEITIDLN--GLLEWEDLMEIEKKANRIIWEDREIYAGFPSAEELAHMDYRSK--KELT 176

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             +R+VS+   D     +  C GTHV +TGEI L+  ++    + G+ RI  + G+ A  
Sbjct: 177 GAIRIVSIPGGD-----TCACCGTHVKTTGEIGLVKFLTMIHYKGGV-RISLLCGEAAVM 230

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
               + E+L+ ++  L    G     VE++  E    Q   ++   +L    +   ++  
Sbjct: 231 DYEKKREELQKISVLLSAKAGKTADAVEKVKNELTMTQAKCSEMSRKLM--KIYADQLNG 288

Query: 794 VNF-MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-TEDLLDRFN 851
            N  +  I   +D  EL+  ++   +  + GI++ +  S     S ++   +ED      
Sbjct: 289 GNSKICWIEDGLDMTELRHFVNFALEGKKGGIVLALSESVNGGFSYVLGSQSED------ 342

Query: 852 AVDLARLSAKVLGG---GGGGGRPHMAQS 877
                R  +K L G   G GGG   MAQ 
Sbjct: 343 ----MRALSKELNGELSGRGGGSSQMAQG 367


>gi|94985303|ref|YP_604667.1| threonyl/alanyl tRNA synthetase, SAD [Deinococcus geothermalis DSM
           11300]
 gi|94555584|gb|ABF45498.1| Threonyl/alanyl tRNA synthetase, SAD [Deinococcus geothermalis DSM
           11300]
          Length = 399

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 132/396 (33%), Gaps = 23/396 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                   +   V  D + FY E GGQ GD G     G   ++TD +K      + H   
Sbjct: 15  FTATVTDRRDGAVALDASAFYPEGGGQNGDVGVLRWRGGEARVTDTRKDKSSGVIWHEGE 74

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                    S+   +D   R +    HSA HLL  A   +  +      S    +     
Sbjct: 75  GELPP-VGASIRGEVDPVCRWRNMARHSAEHLLAQAFHRVNPAFAVAAVSLRNAESTIDL 133

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
                       + +           L  +T      +            K    VR+V 
Sbjct: 134 TGDPGEADVRAAERLLRETLARTELTLETLT----VPEEELYRYPLRREAKVRGDVRLVI 189

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
               +G     + CGGTHV     +  + ++    IR G+ R+  + G+ A ++L     
Sbjct: 190 FRDAEGIPFDVSACGGTHVPCASMVAPVVVLRTERIRGGLTRVFFMAGEEASAYLADVYR 249

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI---HAKRKLQLNVEDLSCHKIADVNFM 797
             ++LA     S  ++ GRV  +  E   L+        R  +L  +      +A V   
Sbjct: 250 DARALAQSFSASVSDLPGRVAALATERDMLKAEGTALRARLARLLADAAPLETVAGVPLR 309

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
              + + +      + DAL    +  + + L    +         V     +  +A  L 
Sbjct: 310 LLNLEDPNL-----LSDALAATPKGEVRVALASGGR-------CGVGSG-REDVSAGKLL 356

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             +A  L GG GGGRP +AQ       +  +A+  V
Sbjct: 357 -EAALRLTGGKGGGRPALAQGRTAAPEQFGEAVREV 391


>gi|310644107|ref|YP_003948865.1| threonyl/alanyl tRNA synthetase sad [Paenibacillus polymyxa SC2]
 gi|309249057|gb|ADO58624.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus polymyxa SC2]
          Length = 391

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 73/403 (18%), Positives = 145/403 (35%), Gaps = 31/403 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
              I +         V+ ++T FY   GGQ  DTG   G  +     +            
Sbjct: 16  DTHITQSMERDGAFFVMLEETAFYPHGGGQPCDTGTIQGIRVLDVFLEDGD--------- 66

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              +   L  E  +   +D++ R      HS  HLL      ++          +  +  
Sbjct: 67  IWHQVERLPNEGKVACQLDWERRFDHMQQHSGQHLLSAVC--LVLLGARTESFHLGQEYA 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             DV  S+ +TSA+L +IE  VN  I  N  + +  +  E             K  + +R
Sbjct: 125 TIDVNCSE-VTSAQLSAIEQEVNQQIYNNRSIKSYFVTHEQWKDIPLVK--MPKVTENIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  +        CGGTHV+ TGEI ++  +     + G+ RI    G RA      
Sbjct: 182 IVEIEGIEYN-----ACGGTHVAQTGEIGMIKCLKWE-KQKGMARIHFKCGARALHDFND 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVN 795
               L  L++     + +++ R E+  +E+++L+      + +            +   +
Sbjct: 236 SVRILDVLSAKFNTGRKDILTRFEKWEQEHKQLKAQVELLQEENASYQAKELLSAVQG-H 294

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            ++++  +   +E++ +   L  +    +++L   + E K  +      +     +    
Sbjct: 295 VLAYVFEQKSIQEMQQLAAKLTAEHD--LLVLFATTAENKIILA----HNGTQSVSCGAF 348

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV-ASFLK 897
            + +      G GGG    AQ+   +              F++
Sbjct: 349 LKENLGA-FQGKGGGSNQSAQAAFSSRENLLNFFETAQRQFIQ 390


>gi|297622597|ref|YP_003704031.1| Threonyl/alanyl tRNA synthetase SAD [Truepera radiovictrix DSM
           17093]
 gi|297163777|gb|ADI13488.1| Threonyl/alanyl tRNA synthetase SAD [Truepera radiovictrix DSM
           17093]
          Length = 397

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 146/388 (37%), Gaps = 25/388 (6%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  V  + T FY  +GGQ  DTG   G  +     DV+ + + ++   A    G      
Sbjct: 29  QSWVRLEDTLFYPTSGGQPHDTGTLGGAAVT----DVKLEGDAVWHLVA----GRPEVGA 80

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +   +D+  R +    HSA HLL  A   +  +  ++    ++  G    +  +   ++
Sbjct: 81  RVEGALDWSRRYRHMQRHSAQHLLSQAFYRLAPAFETRA---VSLAGSVCTLDLAGAPSA 137

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            +    E    + +   L V T  ++  +            K   RVR+V +     G  
Sbjct: 138 EDAAQAETLALEAMYAALAVTTFEVDEGELSRYPLRRP--PKVTGRVRLVQM-----GDF 190

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
             + CGGTHV  TGE + L ++    IR  + R+    G  A++    + + +  LA+  
Sbjct: 191 ELSACGGTHVRCTGEALPLKVLKLERIRGALTRVHFAAGWEAQADYGVKHQLVSDLAARF 250

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLI-HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
                ++  RV  +      LQ    A R            + A    + + + E  +  
Sbjct: 251 SARPSDLSARVGALQAALHDLQRDLEAARARLAAGLAAELGRSASGGVVCYALREDQADL 310

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           L+ +   L ++   G+  L+   +E +A +L            A    R +   L  G G
Sbjct: 311 LEPLAGQLTER---GLTALLAAPREGRAQLLFARPAAGEGDLRAA--LRAALPYLR-GRG 364

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG P  AQ  GP   +  +A+   +  L
Sbjct: 365 GGTPARAQGSGPETARVPEALEAASRAL 392


>gi|15430869|gb|AAK98603.1|AF406753_1 analyl-tRNA synthetase-like protein [Actinidia deliciosa]
          Length = 209

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/213 (34%), Positives = 109/213 (51%), Gaps = 11/213 (5%)

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS + P+ LRFD TH   ++  EL  +E+ VN  I   LPV     N  +A A G
Sbjct: 3   HVNQAGSLVAPERLRFDFTHFDKVSDEELARVEEIVNQKIWAKLPVNIFQKNIAEAKAVG 62

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D V VV +     G +   LCGG HV++T EI L  IV+E+ I AG RRI
Sbjct: 63  AMALFG-KYGDIVPVVQI-----GDYGLELCGGCHVANTSEIGLFKIVAEAGIGAGTRRI 116

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG+ A + L    +   +    +K +   +  R+E + ++  +L+        +L  
Sbjct: 117 EAVTGKAAFTLLNEPSQGSSAYRFLVKTTIEGIPDRIEGLSQQIHQLEKEKESLTAKLGN 176

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKS 811
            +L     S  KI  V+ ++  I   D   L++
Sbjct: 177 TELNDIKQSIKKIEGVSVVARKIEGQDMNGLRA 209


>gi|282164144|ref|YP_003356529.1| alanyl-tRNA synthetase-related protein [Methanocella paludicola
           SANAE]
 gi|282156458|dbj|BAI61546.1| alanyl-tRNA synthetase-related protein [Methanocella paludicola
           SANAE]
          Length = 402

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 87/389 (22%), Positives = 146/389 (37%), Gaps = 28/389 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V VV  +T FY   GGQ  D G   G  +   I             H +   G      +
Sbjct: 37  VRVVLSETAFYPGGGGQPSDRGTIDGIPVDDVIEQD---------GHVVHVLGKAPANKT 87

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID+  R  L   HS  HLL   L  +     S     +  D L  DV     + + 
Sbjct: 88  VSCIIDFDRRFDLMQQHSGQHLLSAVLFKLYQCKTSS--LHMGMDELSIDVAMPD-MPAQ 144

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L ++E+ VN  I ++LPVV  ++  E A                VR+V +   D     
Sbjct: 145 MLMTVEEEVNAYIYKDLPVVISVVTPEVASEMTLRKT--PPKEGEVRIVEITSID----- 197

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            + C GTHV  TGEI ++ IV      A   R+    G+RA      + + +  L    +
Sbjct: 198 RSPCCGTHVRRTGEIGIIKIVKTEKRGAET-RVYFKCGKRALKDYQFKQDIVTGLVHLYR 256

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-VEDLSCHKIADVNFMSHIISEVDSKEL 809
           +S+G+V+ + E +  + R  Q    + K ++  VE       A    +     +    ++
Sbjct: 257 MSEGDVLAKTEALAAQLRNTQKELTEIKDKMLRVEAKEISASATSKVIDRSYGDKSFADI 316

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
            ++   L   ++SG  +++  S   K  +     +      +   + +    V   G GG
Sbjct: 317 GTLAKYL---LESGEFVVILASVPDKRLLFAHSGKF---DISCGKMLKE-NLVSFNGKGG 369

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G+ + A  G       ++  A +   L K
Sbjct: 370 GKDNWANGGFSTLEDMERFKAFLKDALAK 398


>gi|56807614|ref|ZP_00365516.1| COG0013: Alanyl-tRNA synthetase [Streptococcus pyogenes M49 591]
          Length = 88

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 6/86 (6%)

Query: 1  MS--NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
          M   + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1  MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTN 84
            +T  QK +R     ND++NVG+T+
Sbjct: 61 PRITNAQKSIRT----NDIENVGKTS 82


>gi|310659329|ref|YP_003937050.1| alanyl-tRNA synthetase-like protein [Clostridium sticklandii DSM
           519]
 gi|308826107|emb|CBH22145.1| Alanyl-tRNA synthetase related protein [Clostridium sticklandii]
          Length = 402

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 143/392 (36%), Gaps = 40/392 (10%)

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
             SS + AI++  E           ++V D+T FY E GGQ  D G      +       
Sbjct: 31  EASSNIVAILKDKEF---------YKIVLDETIFYPEGGGQPSDRGEIEEIPVFDVKEKD 81

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
                             L     +   ID+  R      HS  H L   +  +     +
Sbjct: 82  ---------GIVYHYVNELPKNSKVKSKIDFNRRFDFMQQHSGEHALSGVI--LKLFGGA 130

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I    +  D+   K +T   L   E+  N  I +N  V   + + E   A     
Sbjct: 131 NKGFHIGEQFVTIDINI-KDMTEEMLIEAENETNRYIFENQKVDQIVTDTEGLKAYPIRK 189

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            +     + +RVVS+   D        C GTHV + GE+ ++ I+   S   G+ RI  +
Sbjct: 190 EITA--EEDIRVVSMGEAD-----CCACCGTHVRNLGEVGIIKIIKAESY-KGMTRISFL 241

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            G RA +    +++ +KSL   L   +  ++ +V++  E+   L+      +  L     
Sbjct: 242 CGYRALNDYKEKNDIIKSLKKELSSEESMILTKVQKQREDISALKKQSDIIRKDLAKNIS 301

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
              K  +   ++ I  +VD   L  +   L +K  S  ++L      K    +  VT++ 
Sbjct: 302 LNIKADET--IAIIFDDVDFLTLVHIESILLEK--SNTVILATTVDNK----ITAVTKN- 352

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            D  N     + + K    G GGG    AQ  
Sbjct: 353 -DAINLGQFFKENIKSYN-GKGGGSKDKAQGS 382


>gi|260881608|ref|ZP_05404819.2| putative alanyl-tRNA synthetase domain-containing protein 1
           [Mitsuokella multacida DSM 20544]
 gi|260848372|gb|EEX68379.1| putative alanyl-tRNA synthetase domain-containing protein 1
           [Mitsuokella multacida DSM 20544]
          Length = 390

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 90/404 (22%), Positives = 160/404 (39%), Gaps = 29/404 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E+V          VV DQT F++E GGQL DTG     G  L +T V +KA  IF   
Sbjct: 6   EAEVVRTEPYHGGFAVVLDQTVFFSEGGGQLSDTGTLTAAGKVLAVTHVHEKAGEIFHET 65

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L     +   +D+Q R      H   H+L +A   + G+H    G  ++ D +
Sbjct: 66  KE----PLEPGTKVQAKLDWQVRFDHMQQHCGEHMLSYAFYKLFGAH--NVGFHMSADMV 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+   K +   +    E   N  I ++ P+ T+++  E+A           K    +R
Sbjct: 120 GIDL--DKEVDWQQALQAERFTNRQIQEDRPITTKLVPAEEAAKMNLRK-FNDKLTGILR 176

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +VSVE  D     S  C GTH +S+G + L+ I      + G  R+  + G+ A   +  
Sbjct: 177 IVSVEGSD-----SCTCCGTHPTSSGMVGLVKIFKVEKHKEGS-RVSFLCGREALERVEQ 230

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCH---KI 791
                   ++ L + +  +   V  + +E ++L     +   + L+  + ++  H     
Sbjct: 231 YMLAALDASNLLSIKETELPDGVARLQQEKKELSERLTECTGKLLEYRIAEMQAHPTATK 290

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           A       +  ++  KE K++   L  +I      +   + E + + + + T+      +
Sbjct: 291 AGHKKFVFLEPDMMPKEAKALAKRL-GEIPESFSAIFYRNGE-RLNYMFLATDGA--ELS 346

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN---KADQAIAGV 892
              + R   +   GG GGGRP   Q             +A+  V
Sbjct: 347 CQQVIRTVNEA-FGGRGGGRPESCQGSAACPEDWQAKAEALMSV 389


>gi|238925421|ref|YP_002938938.1| truncated alanine-tRNA ligase [Eubacterium rectale ATCC 33656]
 gi|238877097|gb|ACR76804.1| truncated alanine-tRNA ligase [Eubacterium rectale ATCC 33656]
          Length = 417

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 146/405 (36%), Gaps = 39/405 (9%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
             ++ +++ +QT F+ E GGQ  D G   G  +             + +           
Sbjct: 32  DDKQFDIILNQTLFFPEEGGQSPDMGILGGYRVVDVQIKNGVITHTVDISADDCCEAEKE 91

Query: 567 TEM------------------SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           T                     +   ID+Q+R      HS  H+    +           
Sbjct: 92  TGKQITGNEFEPEKVELAAGVHVQGKIDWQHRFYNMQQHSGEHIFSGIVHRRF--GFENV 149

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G  ++   +  D +    I+  ++  +E  VN  I++N+P+     +R++       + +
Sbjct: 150 GFHLSDSVVTMDFS--GVISPEDIAEVEHEVNVAISKNIPIEVTYPSRDELAQLEYRSKI 207

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                 +VR+V+V   D        C   HV  TGEI +L +++  + + G+ RI  + G
Sbjct: 208 E--IEGQVRIVTVPGYD-----VCACCAPHVKRTGEIGMLKVMNYQNYKGGV-RISILCG 259

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            RA      + + +  L      +Q  +V  V ++    + L+      K  L    +  
Sbjct: 260 FRALEAFRQKCDIISELMGIFTTNQEAIVDNVTKLKAVNQSLKSELGTAKSALLDYKV-A 318

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
              AD +        +D+   ++ ++ L +K  SG       + E   S +I  +++   
Sbjct: 319 ELPADTDNAVLFEDGIDTNTARNCVNGLVEKY-SGFSAFFTGNDEAGYSFIIG-SKNADC 376

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG-NKADQAIAGV 892
              A  L         G  GGG+P M Q       ++ ++ +  V
Sbjct: 377 NTVAAALRNKL-----GARGGGKPVMVQGSVKAAKSEIEEVLKEV 416


>gi|210609958|ref|ZP_03288187.1| hypothetical protein CLONEX_00371 [Clostridium nexile DSM 1787]
 gi|210152704|gb|EEA83710.1| hypothetical protein CLONEX_00371 [Clostridium nexile DSM 1787]
          Length = 394

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 154/381 (40%), Gaps = 34/381 (8%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           +V    SG+  EVV D+T F+ E GGQ  DTG         ++TDVQ+KA  I+      
Sbjct: 19  VVSCEQSGEVYEVVLDRTAFFPEGGGQYADTG----RLDDAKVTDVQEKAGIIYHKTNQ- 73

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L    ++  TID++ R      HS  H++   +  + G      G  +        
Sbjct: 74  ---SLEIGKTVQGTIDWEERFSKMQQHSGEHIVSGIVHAVYGYD--NVGFHMG--KDAIT 126

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +  +  I+  ELK IE   N+ + ++L +      +E+  +    + +      +VR+V 
Sbjct: 127 MDFNGSISKEELKVIERKANEAVVKSLDIKVLYPAKEELDSIAYRSKIE--IEGQVRIVE 184

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   D        C   HV  TGEI L+ +++  + + G+ RI  + G RA      + E
Sbjct: 185 IPGYD-----VCACCAPHVKKTGEIGLIKLLNVQNYKGGV-RISMLCGFRALQDYEQKAE 238

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            +K ++  L   +  V   V  + +E    +   ++ + +L V  +          +   
Sbjct: 239 SVKKISVLLSAPEEEVFSEVTRLKQEISSGKAKVSQLQQKLLVYKVE-QIPQSQEVVVWF 297

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
             E++    + + + + +   S   +  G  K+    V+   + D           R+ +
Sbjct: 298 EEELEGNAPRELTNLIIENGASIGAVFAGDEKDGYRYVIGSKSCDT----------RIFS 347

Query: 861 KVLG---GGGGGGRPHMAQSG 878
           K L    GG GGG+P M Q  
Sbjct: 348 KRLNEKFGGRGGGKPEMVQGS 368


>gi|260187570|ref|ZP_05765044.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
          Length = 87

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 17 KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHND 76
          K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QKC+R      D
Sbjct: 2  KAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQKCIRT----PD 56

Query: 77 LDNVGRTNRHHTFF 90
          +D VG T RH+TFF
Sbjct: 57 IDEVGITTRHNTFF 70


>gi|164686159|ref|ZP_02210189.1| hypothetical protein CLOBAR_02597 [Clostridium bartlettii DSM
           16795]
 gi|164601761|gb|EDQ95226.1| hypothetical protein CLOBAR_02597 [Clostridium bartlettii DSM
           16795]
          Length = 353

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 139/351 (39%), Gaps = 26/351 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           EI++      K  +V D+T FY E GGQL D G      I             +      
Sbjct: 17  EIIDIKEIDNKFHIVLDKTGFYPEGGGQLCDLGKIDSHDIEYVYEKDDVIYHVLNTK--- 73

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +   +++  R     +H A H++            +     I    +  
Sbjct: 74  -----PIKIHKVKCILNWNRREYSMTHHLAQHIISALFLKEFNKKTTSFHMGIEDSCVDI 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           +       +  E+K IE   NDIIA+N+PV T  + +++A          +K N  VR+V
Sbjct: 129 E----GSFSDKEIKKIEKMANDIIAENIPVETFEITKKEAKKLKLKDDF-SKINGNVRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            V   D        C G H  +T ++ ++        +    RIE + G++A ++++ +D
Sbjct: 184 KVGDLDTN-----CCCGVHPQNTLDLRIIKFKKHEKYKT-STRIEYLAGKKAINYIINRD 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADV 794
           + L  +  +L  S  + +  +E I  +       + + K ++   +L     S   + D+
Sbjct: 238 DNLSKICKYLSCSDEDSIKGIENINNKLTDSIKENKRLKEEIAHYELKDLVSSAKLVNDI 297

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
           + +  I ++ D+K +  + + + ++     I+L  +    + +++   +++
Sbjct: 298 SIIDKIYNDKDTKYISKLANKITEEDNK--IVLFALINGDRVNLVFSCSKN 346


>gi|322368847|ref|ZP_08043414.1| alanyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320551578|gb|EFW93225.1| alanyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 396

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 89/387 (22%), Positives = 147/387 (37%), Gaps = 31/387 (8%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
              +     V   +T FYAE+GGQ  D G   G  +               V H +    
Sbjct: 16  TVAAIDGRNVSLSETYFYAESGGQPADRGTLGGISVVDVQKRDGD------VVHTLETDP 69

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  +   +D + R     +H+A+H+L+ A   ++   +   G  I  + +R D   
Sbjct: 70  EFEEGEEIRGQVDEEFRTYCMRSHTASHVLYGAGR-LILDDLGYGGFDIGEEKIRVDFQT 128

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVR 677
           S  I    L  +E   N  +  +LPV    + +E+A+A    A             + VR
Sbjct: 129 STDIDDDVLVELERLTNRAVWDSLPVSWEAVPKEEALAREDIAFNTKTEEGVLSGSETVR 188

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           VV +E  D      A CGGTHV +T EI  + IV  S+   G+ R+E   G  A      
Sbjct: 189 VVDIEGWD-----VAACGGTHVENTREIGPVTIVDRSNPGEGMTRVEFAVGPPAIRTRAD 243

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHKI--A 792
           +     + A        ++   ++ +  E   L+   A  K +L    +++L+   +   
Sbjct: 244 EKRSALAAARIAGTGVEDLPDEIDRLTGEIDALETELADAKSRLVGATIDELAEETVARN 303

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
              ++   I  V   EL    D +++       ++    KE    +++    D+     A
Sbjct: 304 GHEWLVGTIDGVGPNEL---SDRVRELAGETADVVALTGKEGSTFLVVGTDGDVE----A 356

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGG 879
            D+        GGGG GG P  AQ GG
Sbjct: 357 GDVVDEVTAEFGGGG-GGSPTFAQGGG 382


>gi|238588757|ref|XP_002391823.1| hypothetical protein MPER_08693 [Moniliophthora perniciosa FA553]
 gi|215457008|gb|EEB92753.1| hypothetical protein MPER_08693 [Moniliophthora perniciosa FA553]
          Length = 355

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 144/314 (45%), Gaps = 11/314 (3%)

Query: 487 GVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
            +++ VKAI      +        G    V+ D+T FYAE+GGQ  DTG  + DG+    
Sbjct: 3   NITATVKAIFHNKSFISSTSEIPPGTDFGVLLDRTSFYAESGGQENDTGSIVIDGVADFE 62

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               +   G  +H   ++ G L+    +V   D   R  L  NH+ATH+L++ L  +LG 
Sbjct: 63  VTDVQVYNGYVLHTGRLKYGRLKVGDEVVSQYDELRRWPLRNNHTATHILNYCLREVLGD 122

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS- 662
           H+ Q GS + P  LRFD +H   IT+ EL  IE+     I++N+ V ++ ++ ++     
Sbjct: 123 HIDQKGSLVAPSKLRFDFSHKAGITTPELTKIENMSLGWISRNVKVYSKDLSLQEGYKIP 182

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           G  A+ G  Y D VRVVS+EY+   +          +    TG+I    I  ES I  GI
Sbjct: 183 GLRAVFGEAYPDPVRVVSLEYDVDEIAKDLKNPKWRSTSQKTGDIKHFVITEESGIAKGI 242

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-----WEEYRKLQLIHA 775
           RRI A+TG  A+       +    L    K++  +   +++ +       +   L+    
Sbjct: 243 RRITAVTGHEAQEVTRVARDLETRLNEADKLTGKDKDAQLKALSVELGQADISVLKKNEL 302

Query: 776 KRKLQLNVEDLSCH 789
           K +L +  +     
Sbjct: 303 KDRLAVIRKAFDKQ 316


>gi|323702819|ref|ZP_08114478.1| Threonyl/alanyl tRNA synthetase SAD [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532207|gb|EGB22087.1| Threonyl/alanyl tRNA synthetase SAD [Desulfotomaculum nigrificans
           DSM 574]
          Length = 400

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 147/384 (38%), Gaps = 25/384 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            ++       K+ V+ + T FY E GGQ  D G  +      ++  V+++ EGI    A 
Sbjct: 16  NVIGSIKENGKMGVLLENTIFYPEGGGQPSDRGTMVSARRCYEVVHVEQRPEGIVHWLAG 75

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     S++++ID   R+     H   H++        G      G  +  +    
Sbjct: 76  TSVPEN--GASVLMSIDADRRQDHMQQHHGQHIISAIFEQKYGWDT--VGFHLGEETSTI 131

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+T  K I    L+ +E+  N ++ +NLPV     +RE    +    +      ++VR+V
Sbjct: 132 DLTTDK-IPLHVLQEVEEEANRVVMENLPVKIETYDREQLNPALLKKVPPD--QEKVRLV 188

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           ++   D        C GTH  +TGE+  + ++    +R G  R+  I G R    +    
Sbjct: 189 TISGIDEN-----ACCGTHPRATGEVGPVKLLKTEKVR-GNTRLHFICGLRTIRWIRQTA 242

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLNVEDLSCHK--IADV 794
           E L+S+   +       + R+     E +KLQ    +    K +   + L      I D 
Sbjct: 243 ETLRSIEDAVGAVGSEAITRINNREAELKKLQKERKELLTFKYRHLADQLKEQALFIGDT 302

Query: 795 NFM-SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
             +      + D + ++ V     ++    + +L   +      V++    ++    N  
Sbjct: 303 YLISVQHFPDGDMELIRGVAAIWCEQ-PQRVAVL--TAGTGPFDVVMARGAEVAPAMN-- 357

Query: 854 DLARLSAKVLGGGGGGGRPHMAQS 877
            LA     +L  G GGG   + Q 
Sbjct: 358 QLAAQVWPILK-GKGGGSADLVQG 380


>gi|225389532|ref|ZP_03759256.1| hypothetical protein CLOSTASPAR_03280 [Clostridium asparagiforme
           DSM 15981]
 gi|225044396|gb|EEG54642.1| hypothetical protein CLOSTASPAR_03280 [Clostridium asparagiforme
           DSM 15981]
          Length = 403

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 143/382 (37%), Gaps = 36/382 (9%)

Query: 502 VEEAVSGQKV--EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           VEE   G+     V  +QT FY E GGQ  DTG   G  +R       K    +      
Sbjct: 30  VEECRPGKDGTWMVALNQTGFYPEGGGQPSDTGTLDGVLVRYVCEKDGKVWHQV------ 83

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L         ID++ R     +H+  H+L   +           G  +  D +  
Sbjct: 84  --DAPLEPGRLAEGVIDWERRYDHMQHHTGEHILSGLIHRRY--GYDNVGFHMGKDEVTI 139

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D      +T  +L+ +ED  N ++  N+PV       +   A    +    +   +VR++
Sbjct: 140 DFN--GLLTMEQLEELEDMANGVVWDNVPVEEHFPTPQQLAALDYRSK--KELTGQVRII 195

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           ++   D     +  C GTHV++TGE+ ++ +      + G+ RI  + G++A      + 
Sbjct: 196 NIPGGD-----TCACCGTHVTNTGEVGIIKVTGMIHYKGGV-RISILCGRKALLDYRRRV 249

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
                +++ L      +   VE++  + +  + +      +L     +    +    +  
Sbjct: 250 NVDTRISNLLSAKPQAIGDAVEKLKADGQDREAVIGGLYQKLFAFKAAACPESGSPLVCF 309

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDRFNAVDLARL 858
               +    ++ +   L ++ +  ++++   + E  + +  +          +A    R 
Sbjct: 310 E-EGLPPVRVRQLCTLLYEQNKGNVVLVCSGTDETGEYAYALG---------SARADMRP 359

Query: 859 SAKVLGG---GGGGGRPHMAQS 877
            ++ L G   G GGG   MAQ 
Sbjct: 360 LSRTLNGCLAGRGGGSALMAQG 381


>gi|295101312|emb|CBK98857.1| Alanyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6]
          Length = 394

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 137/382 (35%), Gaps = 23/382 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             +  D T FY E GGQ  D G        +       +  GI  H         +   +
Sbjct: 33  GRIALDGTVFYPEGGGQPADRGTLTLADGTVLHVTDVHETNGIIWHTVDALPETTQPGAA 92

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +  TID++ R      H+  H+L   L  +        G  I  D +R D +    I++ 
Sbjct: 93  VTGTIDWEWRFDKMQQHTGEHILSGILHQMF--GAENVGFHIGSDAVRMDTSVP--ISAE 148

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L+  E   N II +N+PV+      E+  A    +    +   +VR+V++   D     
Sbjct: 149 GLREAELAANRIIWENVPVLITYPTPEELAALTYRSK--KEIAGQVRIVTIPGAD----- 201

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C GTH ++TG++  + I++  + + G+ R+  + G RA         +   + + L 
Sbjct: 202 VCACCGTHTAATGQVGQIKILTSENYKGGV-RLSVVCGGRALREAQAMRSRQADIGALLS 260

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                    V  +++EY  L+  H     QL   D    ++         +  +D   L 
Sbjct: 261 AKADQTAVAVHRVYDEYTALKFAHFGLCSQLF--DTLAAQLGPDETAIRTVPGLDPDGLH 318

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
            +   L +        L     EK     I  +       +   L +     L  G GGG
Sbjct: 319 RLAARLSEATTGLCAAL--TPSEKGTGYCIARS-----GGDVRALTKALNAALN-GRGGG 370

Query: 871 RPHMAQSG-GPNGNKADQAIAG 891
           +P + Q        + ++ +  
Sbjct: 371 KPGICQGSCAATPEQVEEFLKK 392


>gi|311896687|dbj|BAJ29095.1| hypothetical protein KSE_32860 [Kitasatospora setae KM-6054]
          Length = 412

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 92/207 (44%), Gaps = 11/207 (5%)

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
                 L  +E  +N+++ + L V   +M  + A   GA A+ G K+ D VRVV++    
Sbjct: 74  AYDLDVLADVEQKINEVLVRELDVTAEVMTMDQAREQGAIAMFGEKHGDSVRVVTI---- 129

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G  S  L GGTHV +T ++ L+ ++ ESSI +G+RR+EA+ G  A   L  +   +  L
Sbjct: 130 -GDFSKELGGGTHVGNTAQLGLVKLLGESSIGSGVRRVEALVGADAYRFLAREHTVVAQL 188

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHI 800
              +K     +  ++  +    +  +    + + +               +  V  ++  
Sbjct: 189 TELVKGRPEELPEKISGMLGRLKDAEKEIERFRAEKVLAAAAGLAQGAEDVRGVALVAAR 248

Query: 801 I-SEVDSKELKSVMDALQKKIQSGIIM 826
           +     + EL+ ++  ++ ++ +   +
Sbjct: 249 VGDGTGADELRKLVLDVRARLGNRPAV 275


>gi|291294611|ref|YP_003506009.1| Threonyl/alanyl tRNA synthetase SAD [Meiothermus ruber DSM 1279]
 gi|290469570|gb|ADD26989.1| Threonyl/alanyl tRNA synthetase SAD [Meiothermus ruber DSM 1279]
          Length = 390

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 143/379 (37%), Gaps = 37/379 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + ++V     G K   V DQT FY  +GGQ  DTG   G  +   + D +     I    
Sbjct: 14  EAQVVRAWSEGGKHFAVLDQTLFYPTSGGQACDTGHLGGVAVLEVLEDAKATGPVIHRLE 73

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           +      L     +V  +D+  R +    H+A H+L  A     G +V      +     
Sbjct: 74  S-----PLLEGQRVVGQLDWARRYRHMQRHTAEHMLGQAFLRAAGWNVVA----VNMSNP 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
              +    P   A ++  E   N  +  N  V T  +N  +A A G       K    +R
Sbjct: 125 VCTMDFDGPPDEAVIRQAEALANWAVYANTAVRTYFINDAEAPAHGLRRA--PKVAGLIR 182

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           VV +E  D        CGG HV+ TGE   + I      + G  R+  + G  A      
Sbjct: 183 VVEIEGWD-----RVACGGLHVARTGEAGPIKITRFERYKGGT-RVYFMAGWEALELFEQ 236

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           +   L  L  +   S   V   +  + EE+R+ +  +A  K +L               M
Sbjct: 237 EHRLLARLGEWFSSSPLEVEKPIGNLREEWRRARAENAALKDELAE-----------RIM 285

Query: 798 SHIISEVDSKEL-----KSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRF 850
             +++E  ++ +      SV+D + K++    G++ L+    E KA  +++      +  
Sbjct: 286 RDLLTEFPTQTMAAQVPHSVLDMVGKRLAEWPGVLALLVAQAEDKARYVLLKHPSRSEDL 345

Query: 851 NAVDLARLSAKVLGGGGGG 869
            A  +     K LG  GGG
Sbjct: 346 QA--IWEEVLKPLGARGGG 362


>gi|325262863|ref|ZP_08129599.1| alanyl-tRNA synthetase family protein [Clostridium sp. D5]
 gi|324031957|gb|EGB93236.1| alanyl-tRNA synthetase family protein [Clostridium sp. D5]
          Length = 389

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 151/400 (37%), Gaps = 50/400 (12%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G+  EVV D+T F+ E GGQ  DTG      +     DV +K   I+          + 
Sbjct: 25  KGEYYEVVLDRTAFFPEGGGQYADTGWLEDSKV----MDVWEKDGIIYHV----TEAPVE 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   ID+  R      H+  H++   +        +  G  +       D      
Sbjct: 77  ENREITGKIDWDMRFMKMQQHTGEHIVSGLVH--ARFGYNNVGFHLGSGDCTMDF--DGE 132

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           IT  EL+ IE   N+   +NL V     ++E+ ++    + +       VR+V++   D 
Sbjct: 133 ITKEELREIEWQANEAAVKNLEVQVSWPSKEELVSLEYRSKIE--IEGEVRIVTIPGYD- 189

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  C   HV  TGEI L+ + +    + G  R+  + G RA +    +++ +KS++
Sbjct: 190 ----VCACCAPHVKKTGEIGLIKLTNVQRYKGGA-RVTMLCGFRALADYDSKEQHVKSIS 244

Query: 747 SFLKVSQGNVVGRVEEIWEE---YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
           + L   +  +      + EE    + +     KR L+    ++S  +     F      E
Sbjct: 245 ALLSAKEEEISQAAGRMKEECGRLKAVLAEKQKRLLEYRAAEISGEE----TFACLFEEE 300

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           ++    + +M+ +  +      + +  + +K    +I          +  +  R  AK L
Sbjct: 301 LEGDGPRILMNLVLARGIECCAVFL-KTGDKSWRYVIG---------SMGEDMRPVAKGL 350

Query: 864 GG---GGGGGRPHMAQSG--GPNGNKADQAIAGVASFLKK 898
                G GGG+P M Q    G            V ++++K
Sbjct: 351 NEEFCGRGGGKPEMVQGSLQGKE--------EDVRAWIEK 382


>gi|291549913|emb|CBL26175.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Ruminococcus torques L2-14]
          Length = 404

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 82/424 (19%), Positives = 156/424 (36%), Gaps = 37/424 (8%)

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
            +   +   +   S   A+V + E  E         V  D+T F+ E GGQ  DTG    
Sbjct: 10  TRTEKLFYNDSHLSKFTAMVLECEPYE--KKEGCYAVELDRTAFFPEGGGQYADTGKLK- 66

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                +++DV +K   I                 +   ID++ R      H+  H++   
Sbjct: 67  ---DAKVSDVWEKNGRILHITDQ----PFEAGEIVEGEIDWKTRFMKMQQHTGEHIVSGI 119

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           +        +  G  +  +    D      I+   L+ IE   N  + +NL +     ++
Sbjct: 120 VH--ARYGFNNVGFHLGTEDCTMDF--DGEISKEALQEIELEANRAVWKNLTIEVSYPSK 175

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+       + +      +VR+VSV   D        C   HV  TGEI ++ +V+    
Sbjct: 176 EELEELDYRSKIE--IEGQVRIVSVPGYD-----ICACCAPHVERTGEIGMIKLVNMQRY 228

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + G+ R+  + G RA +    + E+ + +++ L   +      V  + EE   L+    +
Sbjct: 229 KGGV-RVTMLCGSRALTDYEKKQEQNRKISALLCAKEYETAEAVGHLKEEMDSLKRTLVE 287

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           ++ QL           +   +     ++ +  ++  ++ + +K +    +  G       
Sbjct: 288 KERQLVHIWAQSVPEEE-KTVCMFSEDISADAMRQYVNEVLEKERILCAVFYGNDAAGYR 346

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGG---GGGGGRPHMAQSGGP-NGNKADQAIAGV 892
            V+   T+DL          R  +K+L     G GGG+P M Q        K  + I  +
Sbjct: 347 YVIGSRTQDL----------RAFSKMLNAAFEGRGGGKPEMVQGTVKGEAGKIREWIQKI 396

Query: 893 ASFL 896
           A  L
Sbjct: 397 AEEL 400


>gi|85720049|gb|ABC75593.1| alanyl-tRNA synthetase isoform 3 [Ictalurus punctatus]
          Length = 259

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 36/247 (14%)

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK---L 742
           G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  A+      D     L
Sbjct: 8   GALTSIEFCGGTHLQNSGHAAQFVIVSEEAIAKGIRRIVAVTGAAAQKAQRKADALHQSL 67

Query: 743 KSLASFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCHKI 791
            ++A  +K       +V   + ++ E        +++K ++    + L+  ++DL     
Sbjct: 68  SAMAEKVKAQTAPNKDVQKEIADLTETLGTAVISQWQKDEMRETLKGLKKIMDDLDRSSK 127

Query: 792 ADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           ADV                     +  + S   +K L   +  L+ +      ML  +  
Sbjct: 128 ADVQKRVLEKTKEIIESNPNQPLLVMEMESGASAKALNESLKLLKSQSPQTAAMLFAVDN 187

Query: 833 E-KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E  K   L  V +++ +    A +  +    +L  G GGG+   AQ+ G N     +A+ 
Sbjct: 188 EAGKIICLCQVPQEVSNQGLKANEWVQEVCPLL-DGKGGGKDMSAQATGRNTQCVQEALK 246

Query: 891 GVASFLK 897
               F +
Sbjct: 247 LANEFAQ 253


>gi|229825552|ref|ZP_04451621.1| hypothetical protein GCWU000182_00912 [Abiotrophia defectiva ATCC
           49176]
 gi|229790115|gb|EEP26229.1| hypothetical protein GCWU000182_00912 [Abiotrophia defectiva ATCC
           49176]
          Length = 400

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 144/397 (36%), Gaps = 28/397 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +I          E+V DQT F+ EAGGQ  D G          +  V    E +  H   
Sbjct: 22  KISSIVRENNLYELVLDQTLFFPEAGGQSCDKGSIKTGDSTTTVERVIIDNEDVITHIIR 81

Query: 560 VERGILR---TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            E  +       + +   ID+ +R      HSA H+    +           G  ++ + 
Sbjct: 82  SELPLQPDSLIGIEIAGMIDWTHRFSNMQQHSAEHIFSGIVHR--KYGFENVGFHLSDNN 139

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           +  D +    +T  ++  IE   N +IAQN+ +     N  +           ++ +  +
Sbjct: 140 VTMDYS--GYLTPEQVAEIEFETNRVIAQNISITCYYPNENELKDIDYRCK--SELSGDI 195

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R+V ++  D        C   HV  TGEI L+ ++S    + G  R+  + G RA  +  
Sbjct: 196 RIVEIKGVD-----ICACCCPHVKQTGEIGLMKVISSVRYKGGT-RLSILCGFRALEYFN 249

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
               ++  L S L   QG +V  V  +  E  +L+    +    L + ++        + 
Sbjct: 250 SIYAQMGELKSLLSAEQGEIVNTVTLLKNERDELKNKLREVNRNLLISEIDNLPDGSPSL 309

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +     E++ K  +  ++ L  K  +   +L   S   K     ++  + LD      L 
Sbjct: 310 IFA--DEINPKSQREALNYLISKRDNYCGIL---SGNDKKGYSYLIGSNNLDSV----LV 360

Query: 857 RLSAKVLGGGGGGGRPHM----AQSGGPNGNKADQAI 889
           +   K      GGG+  M    AQ+          A 
Sbjct: 361 QAKLKEGLNAKGGGKKEMIQGFAQASRNEIEALLNAF 397


>gi|291527690|emb|CBK93276.1| Alanyl-tRNA synthetase [Eubacterium rectale M104/1]
          Length = 424

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 149/412 (36%), Gaps = 46/412 (11%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGC--------------AIGDGIRLQITDVQKKAE- 551
             ++ +++ +QT F+ E GGQ  D G                I   + +   D     + 
Sbjct: 32  DDKQFDIILNQTLFFPEEGGQSPDMGILGGYRVVDVQIKNGVITHTVDISADDCCIMGKE 91

Query: 552 ----------GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
                      I       E+  +   + +   ID+Q+R      HS  H+    +    
Sbjct: 92  EAQTEKKTDGQITGMECASEKVEIAAGVHVHGKIDWQHRFYNMQQHSGEHIFSGIVHRRF 151

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
                  G  ++   +  D +    I+   +  +E  VN  I++N+P+      R++   
Sbjct: 152 --GFENVGFHLSDSVVTMDFS--GVISPENIAEVEHEVNVAISKNIPIEVTYPPRDELAQ 207

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
               + +      +VR+V+V   D        C   HV  TGEI +L +++  + + G+ 
Sbjct: 208 LEYRSKIE--IEGQVRIVTVPGYD-----VCACCAPHVKRTGEIGMLKVMNYQNYKGGV- 259

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI  + G RA      + + +  L      +Q  +V  V ++    + L+      K  L
Sbjct: 260 RISILCGFRALEAFRQKCDIISELMGIFTTNQEAIVDNVTKLKAVNQSLKSELGTAKSAL 319

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
               +     AD +        +D+   ++ ++ L +K  SG       + E   S +I 
Sbjct: 320 LDYKV-AELPADTDNAVLFEDGIDTNTARNCVNGLVEKY-SGFSAFFTGNDEAGYSFIIG 377

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG-NKADQAIAGV 892
            +++      A  L         G  GGG+P M Q       ++ ++ +  V
Sbjct: 378 -SKNADCNTVAAALRNKL-----GARGGGKPVMVQGSVKAVKSEIEEVLKEV 423


>gi|317055145|ref|YP_004103612.1| alanyl-tRNA synthetase, class IIc-like protein [Ruminococcus albus
           7]
 gi|315447414|gb|ADU20978.1| Alanyl-tRNA synthetase, class IIc-like protein [Ruminococcus albus
           7]
          Length = 384

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 150/394 (38%), Gaps = 31/394 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             ++   A + +  EV+ D+T F+ E GGQ GD G   G    +++TD  ++   +    
Sbjct: 15  DAQVTACAETEKGYEVILDRTAFFPEGGGQAGDAGTLDG----VKVTDTYERNGEVIHL- 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
               R  L     +   ID   R +   NHS  HLL   +  +        G  +  + +
Sbjct: 70  ---CRSSLEVGKKVYGEIDADIRIRRMQNHSGEHLLMGFIHNMT--GYENVGFHMGSEEV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+     I++ +++  E   N+ +A ++P+     + E+       + L     + VR
Sbjct: 125 LLDL--DGVISAEDIRICEQKANEAVAADVPITISYPDGEELSCMEYRSKLE--MTENVR 180

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V++E  D        C   H  STG I ++ ++S  S R G  R+  I G  A   +  
Sbjct: 181 IVTIEGID-----RCACCAPHFPSTGSIGIIKVISAESNRGGT-RLHIICGLDALDLIRQ 234

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           + E   +++  L          VE++  E   L+   A+ + +   + +   K       
Sbjct: 235 RMESNAAISRMLSAKPEKTADAVEKLLGENAALKKQLAENERRAAEDIIGSIKNDSRKSF 294

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
                 +    ++ + +    K+  G + ++         ++   +E L  R  A D+  
Sbjct: 295 CVFTRGIGRNNMQKIANHAV-KLTDGAVAVLSEDAAGFGYIIA--SEKLPLRAMAKDI-- 349

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
               +  GG GGG   M Q          +AI  
Sbjct: 350 ---NLALGGKGGGSDQMIQGTFTAP---KEAIES 377


>gi|323691798|ref|ZP_08106055.1| hypothetical protein HMPREF9475_00917 [Clostridium symbiosum
           WAL-14673]
 gi|323504164|gb|EGB19969.1| hypothetical protein HMPREF9475_00917 [Clostridium symbiosum
           WAL-14673]
          Length = 384

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 149/396 (37%), Gaps = 44/396 (11%)

Query: 491 IVKAIVQQGEIVEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
            +  I Q    V     G+K  EV+ D+T FY E GGQ  DTG         ++ DV ++
Sbjct: 7   RIPYIRQFEAKVVSCEKGKKGFEVILDRTAFYPEGGGQPSDTGT----LGTARVLDVHER 62

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            E +  +        L+   ++  TID+ NR      HS  H++   +           G
Sbjct: 63  GEEVIHYTEQ----ELQEGQTVTGTIDWDNRFSNMQQHSGEHIVSGLIH--GRYGYDNVG 116

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             +  + +  D+     +T  EL  IE   N+I+  N  +     + E+       +   
Sbjct: 117 FHMGHEEMTIDLN--GILTWEELMEIEKEANEIVFANRQIKATYPSEEELQKLDYRSK-- 172

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            + + RVR+V V   D        C GTHV  TGEI  +  +S    + G+ RI  + G 
Sbjct: 173 KELSGRVRIVEVPGAD-----CCACCGTHVEYTGEIGAVKFLSMIHYKGGV-RISMLCGA 226

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +A      + ++  ++++ L      +   VE +  E  +          +L    +  +
Sbjct: 227 KAMEDYRRKTDQTAAISNLLSAKPDRLKEAVERLKNEAAEKDARIGALTRELLNLKVKQY 286

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
           +      +    + + + +++   D L +                KA    V +ED  D 
Sbjct: 287 EAGQ-KLLLVFETGMTALQIRQFCDRLLE--------------GGKAETAAVFSEDAKDG 331

Query: 850 FN--AVDL---ARLSAKVLGG---GGGGGRPHMAQS 877
           F+  A       R + K L G   G GGG   M Q 
Sbjct: 332 FHYCAGSRSFDMRQAGKTLNGKLNGRGGGSAQMIQG 367


>gi|229830124|ref|ZP_04456193.1| hypothetical protein GCWU000342_02231 [Shuttleworthia satelles DSM
           14600]
 gi|229791422|gb|EEP27536.1| hypothetical protein GCWU000342_02231 [Shuttleworthia satelles DSM
           14600]
          Length = 407

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 125/375 (33%), Gaps = 26/375 (6%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF------VHHAIVERG 563
           + +++ +QT F+ E GGQ  D G  I       +         +               G
Sbjct: 38  QFDIILNQTLFFPEEGGQTPDLGLLIPLPSSPDLPAGASPQVHVLDVKIKSGVIHHFCDG 97

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +  +ID++ R     NHS  H+    +           G  ++      D + 
Sbjct: 98  PLAPGTPVRGSIDWERRYDNMQNHSGEHIFSGLVH--SAFGYENVGFHLSERTCSMDYS- 154

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
             P+T  E+  +E   N II  N  +     + E+       +      +  VR+V++  
Sbjct: 155 -GPLTREEIDRLETAANRIIFDNRVIDASYPSAEELAQLDYRSK--KALSGPVRIVTIPD 211

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            D        C   HV  TGE+ LL ++   S + G R + A  G RA +    +   L+
Sbjct: 212 CD-----VCACCAPHVRRTGEVGLLKVLQIQSYKGGTRLMIA-CGMRALADFRRKQSVLE 265

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
            ++  L   Q      + +   +   L+    +   +L   DL+    +  N      + 
Sbjct: 266 EVSHLLSSPQEEAAMALSKKLADLLALKDALHEASARLLASDLAVLDPSAANVCLFE-NG 324

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           +D   L+  ++ +            G   +  + +L +   D         +     K  
Sbjct: 325 IDPIRLRQAVNQMSAAHSGYCAAFNGSDSDGYSYILSIADGDAR-------ILNEQLKER 377

Query: 864 GGGGGGGRPHMAQSG 878
               GGG   M Q  
Sbjct: 378 FSARGGGSAAMCQGS 392


>gi|291524284|emb|CBK89871.1| Alanyl-tRNA synthetase [Eubacterium rectale DSM 17629]
          Length = 424

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 151/411 (36%), Gaps = 46/411 (11%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGC--------------AIGDGIRLQITDVQKKAE-- 551
            ++ +++ +QT F+ E GGQ  D G                I   + +   D     +  
Sbjct: 33  DKQFDIILNQTLFFPEEGGQSPDMGILGGYRVVDVQIKNGVITHTVDISADDCCIMGKEE 92

Query: 552 ---------GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                     I       E+  L   + +   ID+Q+R      HS  H+    +     
Sbjct: 93  AQTEKKTDGQITGMECASEKVELAAGVHVHGKIDWQHRFYNMQQHSGEHIFSGIVHRRF- 151

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
                 G  ++   +  D +    I+  ++  +E  VN  I++N+P+     +R++    
Sbjct: 152 -GFENVGFHLSDSVVTMDFS--GVISPEDIAEVEHEVNVAISKNIPIEVTYPSRDELAQL 208

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + +      +VR+V+V   D        C   HV  TGEI +L +++  + + G+ R
Sbjct: 209 EYRSKIE--IEGQVRIVTVPGYD-----VCACCAPHVKRTGEIGMLKVMNYQNYKGGV-R 260

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           I  + G RA      + + +  L      +Q  +V  V ++    + L+      K  L 
Sbjct: 261 ISILCGFRALEAFRQKCDIISELMGIFTTNQEAIVDNVTKLKAVNQSLKSELGTAKSALL 320

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
              +     AD +        +D+   ++ ++ L +K  SG       + E   S +I  
Sbjct: 321 DYKV-AELPADTDNAVLFEDGIDTNTARNCVNGLVEKY-SGFSAFFTGNDEAGYSFIIG- 377

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG-NKADQAIAGV 892
           +++      A  L         G  GGG+P M Q       ++ ++ +  V
Sbjct: 378 SKNADCNTVAAALRNKL-----GARGGGKPVMVQGSVKAAKSEIEEVLKEV 423


>gi|326790117|ref|YP_004307938.1| Alanyl-tRNA synthetase, class IIc [Clostridium lentocellum DSM
           5427]
 gi|326540881|gb|ADZ82740.1| Alanyl-tRNA synthetase, class IIc [Clostridium lentocellum DSM
           5427]
          Length = 382

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 147/381 (38%), Gaps = 35/381 (9%)

Query: 502 VEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V     G+K   VV DQT FY E GGQ  D G   G  ++       +  + +  H    
Sbjct: 19  VLSCNEGKKGYEVVLDQTAFYPEGGGQPSDEGILGGVKVK-----DVRIKDHVIYHIVEC 73

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L    S+   ID+  R  +   HS  H++   ++       +  G  ++       
Sbjct: 74  ---PLEVGSSVEGKIDFDKRFDMMQQHSGEHIISGLINK--YYGYNNVGFHLS--RENMT 126

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
                 +TS ++  IE   N+ I +N+PV   I  +E+       + +    N+ VR+V+
Sbjct: 127 ADVDGELTSEQVSEIEYLANEAIYKNIPVQGAIYGQEEVREMTYRSKIE--LNEDVRLVT 184

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   D     +  C GTHV  TGEI ++  +S    R G  R+    G+RA      + E
Sbjct: 185 IPGYD-----TCACCGTHVKYTGEIGMIKFISSERHRGGT-RLTLACGKRALKDYSKKQE 238

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            + S  + L      +   ++++ EE+ + +   A+ K  L    +  +   +   +   
Sbjct: 239 IVSSAMAILSAKPEMITSHLQKLQEEFNETKFKLAEVKGILFSYMVEEYIKCNQATLCIC 298

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
              +  +EL+ +   L +K+    +++   +   K ++          + +     R   
Sbjct: 299 EEGLVPEELRKLCTLLIQKVDKTCLVVTPDATGFKYAL-------GNSKID----IRPLC 347

Query: 861 KVLG---GGGGGGRPHMAQSG 878
           K +     G GGG   + Q  
Sbjct: 348 KAMNMKFQGKGGGSSELCQGS 368


>gi|163784882|ref|ZP_02179652.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879851|gb|EDP73585.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 93

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           +   EL+ + D  + K+   +I+L  I KE  K ++++ V+++L D++ A  + +  A+V
Sbjct: 1   IPPNELRDLADVAKAKLGKSVILLSSIDKEKGKINMVVSVSKELTDKYKAGQIIKEVAQV 60

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + GG GGGRP MAQ GG   +K D+A       +
Sbjct: 61  I-GGKGGGRPDMAQGGGTQIDKLDEAFKKFEETI 93


>gi|55377393|ref|YP_135243.1| alanyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|55230118|gb|AAV45537.1| alanyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 419

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 158/411 (38%), Gaps = 47/411 (11%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
               VV   T FYAE GGQ  D G   G    + + DVQ +   I    A          
Sbjct: 22  DTTAVVLTDTYFYAEGGGQPADRGTLDG----VAVVDVQHRNGDIVHELAEPP--TFGPG 75

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD------------- 615
            ++   +D   R      H+A+H+L+ A   +L   +   G  I+               
Sbjct: 76  ETVEGQVDTAFRTYCMRAHTASHVLYGAGRRLLS-DLGYGGFDISARVPDEADDDDFGPA 134

Query: 616 ---GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----L 668
               +R D   +  I    L  +E   N  + ++  V    + R++A+     A      
Sbjct: 135 ITGKVRVDFETTTEIGDETLTELERLTNRAVWESYDVTWEEIPRDEALGRDDIAFNTKTE 194

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                + VRVV+++  D      A CGGTHV +T EI  + ++  S+   G+ R+E   G
Sbjct: 195 EGIEGETVRVVTIDGWD-----VAACGGTHVGNTREIGPVTVLGRSNPGEGLTRVEFAVG 249

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS- 787
            RA      + E+  + A  L  +   +   V+ +  E   L+   +  + +L    L+ 
Sbjct: 250 PRAIRRRATEHERAMTAAQSLDTNVAELPAAVDGLQSECDDLRETVSSLRERLVDSRLAD 309

Query: 788 ----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                 ++    ++   ++ +D+  L    D  +  +   + +   +  + +  + +  T
Sbjct: 310 LRDDAIEVDGQRWLVGTVAGLDANAL---ADRAESAVGDDVDVAALVDADGQ-YLGVGTT 365

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                  +A ++        GGGG GGRP +AQ GG   +  D+ +A +  
Sbjct: 366 ----GGVDAGEVVDQVTTEFGGGG-GGRPTVAQGGGLGADG-DEIVAFLRD 410


>gi|32453275|gb|AAP82770.1| alanyl tRNA synthetase [Thermocrinis ruber DSM 12173]
          Length = 55

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 42/55 (76%)

Query: 38 FTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM 92
          FTN+GMVPFKN+F G EK  Y    + QKC+R  GKHNDL+ VG T+RHHTFFEM
Sbjct: 1  FTNAGMVPFKNVFLGLEKRPYTRAVSCQKCLRVSGKHNDLEQVGYTSRHHTFFEM 55


>gi|323484730|ref|ZP_08090089.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14163]
 gi|323401967|gb|EGA94306.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14163]
          Length = 384

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 147/396 (37%), Gaps = 44/396 (11%)

Query: 491 IVKAIVQQGEIVEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
            +  I Q    V     G+K  EV+ D+T FY E GGQ  DTG         ++ DV ++
Sbjct: 7   RIPYIRQFEAKVVSCEKGKKGFEVILDRTAFYPEGGGQPSDTGT----LGIARVLDVHER 62

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            E +  +        L+   ++   ID+ NR      HS  H++   +           G
Sbjct: 63  GEEVIHYTDQ----ELQEGQTVTGAIDWDNRFSNMQQHSGEHIVSGLIH--GRYGYDNVG 116

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             +  + +  D+     +T  EL  IE   N+I+  N  +     + E+       +   
Sbjct: 117 FHMGHEEMTIDLN--GILTWEELMEIEKEANEIVFANRQIKATYPSEEELQKLDYRSK-- 172

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            + + RVR+V V   D        C GTHV  TGEI  +  +S    + G+ RI  + G 
Sbjct: 173 KELSGRVRIVEVPGAD-----CCACCGTHVEYTGEIGAVKFLSMIHYKGGV-RISMLCGA 226

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +A      + ++  ++++ L      +   VE +  E  +          +L    +  +
Sbjct: 227 KAMEDYRRKTDQTAAISNLLSAKPDRLKEAVERLKNEAAEKDARIGALTRELLNLKVKQY 286

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
           +      +    + + + +++   D L +                KA    V +ED    
Sbjct: 287 EAGQ-KLLFVFETGMTALQIRQFCDRLLE--------------GGKAETAAVFSEDAKGG 331

Query: 850 FN--AVDL---ARLSAKVLGG---GGGGGRPHMAQS 877
           FN  A       R + K L G   G GGG   M Q 
Sbjct: 332 FNYCAGSRSFDMRQAGKTLNGKLNGRGGGSAQMIQG 367


>gi|239626668|ref|ZP_04669699.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516814|gb|EEQ56680.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 390

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 144/375 (38%), Gaps = 28/375 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           EA        V +Q  FY E GGQ  DTG       ++ +  V ++ E I    A     
Sbjct: 24  EASGKGTWLAVLNQNGFYPEGGGQPSDTGT----LNQVPVLSVHEQGEEILHELAS---- 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L         ID+Q R      H+  H+L   +           G  +    +  D   
Sbjct: 76  PLEPGTLAEGVIDWQKRYDNMQQHTGEHILSGLVHRRY--GYDNVGFHMGAGEVTVDFN- 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              +T+ EL  +ED  N ++  N+PV T   ++E+  +    +    + + +VR++ +  
Sbjct: 133 -GIMTAEELDGLEDAANQVVYDNVPVHTLYPSKEELPSIDYRSK--KELSGQVRIIEIPG 189

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            D        C GTHV +TGE+ ++ I      + G+ RI  + G+RA      + +   
Sbjct: 190 GD-----VCACCGTHVENTGEVGIIKIRGMIRYKGGV-RISMLCGRRALLDYRERLKDGI 243

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
            L++ L      V   VE++  + +  ++   +   QL               ++     
Sbjct: 244 RLSNLLSAKLHLVPEAVEKLKNDCQDREMEIGRLYGQLLELRAG-QYPESSRPLAIFEEG 302

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           ++  +++ +   L ++ +  ++M+   +  E +    +  +       +   L++     
Sbjct: 303 LNMVQIRRLSTLLYEQKKGSVVMVCSGNGTEGEYQYALGSSS-----MDMRTLSKDMNGK 357

Query: 863 LGGGGGGGRPHMAQS 877
           L  G GGG   MAQ 
Sbjct: 358 LH-GRGGGSSLMAQG 371


>gi|284172780|ref|YP_003406162.1| Threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
 gi|284017540|gb|ADB63489.1| Threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
          Length = 403

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 148/405 (36%), Gaps = 29/405 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E      S     V  ++T FYAE GGQ  D G   G  +    T   +        H +
Sbjct: 18  EFEATVRSVDGTNVRLEETYFYAEGGGQPADRGTLNGIDVVDVQTRDGETV------HTL 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                  T   +  +ID + R      H+A+H+L+ A   +   H    G  I  +  R 
Sbjct: 72  ATAPDFETGDDVTGSIDDEFRTYCMRAHTASHVLYGAGRELFDDH-GYGGFDIDAEKGRI 130

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D    +        +++  VN+++ ++  V  R M+   A          T   +    V
Sbjct: 131 DFETDRDPDEVNALTLQRMVNEVVWESRDVSWREMDAAQARDRDEIVFNETGAAETTDTV 190

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            V   D      A CGGTHV +T EI  + ++  S+  +G+ R+E   G  A    + + 
Sbjct: 191 RVVEID--DWDIAACGGTHVENTVEIGPVKVLEVSNPGSGLVRVEYAVGPTAVRAQLDET 248

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI-------HAKRKLQLNVEDLSCHKIA 792
                 A  L+ S   +  R   + EE   L+           + +L+   +D       
Sbjct: 249 RAATRAARTLETSVEELPERATAVVEENATLEAEVDALRDRLLEERLESLGDDTVSKDGK 308

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
           +       I  +   ++   +  L   I   ++ L G+     A V++  T +     +A
Sbjct: 309 EWVVGELDIDGIGPNDVSDRVRELAGDIGD-VVALTGV--NGSAFVVVGTTGET----DA 361

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +L        GGGG GG P  AQ GG      D   A V  +L+
Sbjct: 362 SELVDDVTATFGGGG-GGGPTFAQGGG-----LDDEPAAVVDYLR 400


>gi|302386087|ref|YP_003821909.1| Alanyl-tRNA synthetase, class IIc-like protein [Clostridium
           saccharolyticum WM1]
 gi|302196715|gb|ADL04286.1| Alanyl-tRNA synthetase, class IIc-like protein [Clostridium
           saccharolyticum WM1]
          Length = 384

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 148/382 (38%), Gaps = 29/382 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +V+ D+T FY   GGQ  D G          + DV++ AEGI           L+    
Sbjct: 29  FQVLLDRTAFYPVGGGQPADRGT----LGEAAVLDVREMAEGIIH----FTDKPLKPGSR 80

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++ TID++ R  L  NHS  HLL   +       +   G  +  D +  D     P+T  
Sbjct: 81  VIGTIDWERRFCLMQNHSGEHLLSGIVHKHY--GLDNVGFHMGKDEVTVDFN--GPLTLE 136

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           ++++ E  VNDII +N+PVV    ++E+       +    +   +VR++     D     
Sbjct: 137 QIEAAEAEVNDIIWRNIPVVEFYPSKEELSRMDYRSK--KELTGQVRLIEFPGGD----- 189

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C GTHV S+GEI +L +      + G+ R+  + G+ A      + + +  ++  L 
Sbjct: 190 VCACCGTHVMSSGEIGILKVTGMIHYKGGV-RVSMVCGRLALQDYGNKQKAVSGISILLS 248

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                V+  V+ + EE  K     ++   +L       +   D   +     ++   EL+
Sbjct: 249 AKPDQVLEAVDRLKEEGFKKDGRISRLSKELLERKTRDYPEWDGPLLVFD-RDLSPVELR 307

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
                L  + + G ++L     E      +          +   L+    + L  G GGG
Sbjct: 308 QYCTMLY-EGKKGRVVLACSGGEGSYPYALGSGSQ-----DMRALSNALNRRLN-GRGGG 360

Query: 871 RPHMAQSGGPN-GNKADQAIAG 891
              MAQ           +A   
Sbjct: 361 NALMAQGTFQAVPEDIRKAFEE 382


>gi|320583028|gb|EFW97244.1| Alanyl-tRNA synthetase, putative [Pichia angusta DL-1]
          Length = 384

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 133/354 (37%), Gaps = 34/354 (9%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            +G K EV  + T  + E GGQ  DTG        L++  V +                L
Sbjct: 27  KNGNKYEVELEDTVLFPEGGGQPSDTGKISSGSDILEVESVIRAGLKALHL----VDKPL 82

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-STILGSHVSQNGSCITPDGLRFDVTHS 624
            T   + L++D++ R      H+  HLL   L    L +     G  I        +   
Sbjct: 83  ETGAPVNLSVDWERRFDHMQQHTGQHLLSAVLDKRDLPTLSWNMGDMINY------IEIP 136

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +T  E + +   VN  I QNLP+   +    +                  R++ +   
Sbjct: 137 RKLTDTEREEVTKEVNSYITQNLPISVEVPPDREVDEVKGVM----------RIIHIGDL 186

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        C GTH+ ++G+I  + ++++ + + G  R+  I G R           L++
Sbjct: 187 DSN-----ACCGTHLKNSGQIKGIVLLNQIAGKGGNSRLNFIAGDRIFKFAETSHSILRA 241

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIIS 802
           L S   V    +V +V ++    ++LQ   +    +L L        K  +   +    +
Sbjct: 242 LNSATSVQSEQLVDKVNDLVTATKRLQNRQSTLLKELALLTAADLKTKAGEKKTVFFHRA 301

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV-----VTEDLLDRFN 851
           +V    L  +   L+ +     ++L G  K+  A+++       V+++L +  +
Sbjct: 302 DVGLDFLNQMFKELKDQ-PGTFVLLSGEGKDGGAALVFGEDTEQVSKELKETLS 354


>gi|291535695|emb|CBL08807.1| Alanyl-tRNA synthetase [Roseburia intestinalis M50/1]
          Length = 385

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 153/378 (40%), Gaps = 36/378 (9%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+ D+T F+ E GGQ  D G   G  +                      +  L    +
Sbjct: 33  YHVILDRTLFFPEEGGQSPDKGTIDGIEVTDVQIKKD--------VITHSLKEPLAVGET 84

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID+ +R      HS  H+    + +         G  ++ + +  D      +T+ 
Sbjct: 85  VHGIIDWTHRFNNMQQHSGEHIFSGIVHSRF--GYDNVGFHLSDNIVTMDFN--GVLTAD 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E++ +E  VN++I +NLPV     ++E+       + +      +VR+V++   D     
Sbjct: 141 EVREVETAVNEVIVKNLPVEITYPSKEELKTLDYRSKIE--IEGQVRIVTIPGVD----- 193

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C   HV  TGEI +L + S S+ + G+ RI  ++G RA      + + + S++  L 
Sbjct: 194 VCACCAPHVKKTGEIGMLNVQSLSNYKGGV-RISILSGFRALEEERKKSQVISSISGTLS 252

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
            +Q  +   VE++ +  + L+   A+ K +L  + +        N +    +++D+  ++
Sbjct: 253 ANQELLPELVEKLKQSNQDLKYKLAQAKQKLVEQKMKEIPADQENVLLFE-TDLDTPVMR 311

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVL---GGG 866
           + ++ L +   +GI  +    +E   + +I   T+D           R  A +L    G 
Sbjct: 312 NAINGLVETH-AGICGIFVEKEEGGYNFIIGSKTKDC----------REIATLLREKTGA 360

Query: 867 GGGGRPHMAQSGGPNGNK 884
            GGG   M Q       K
Sbjct: 361 RGGGSAAMIQGSVSAEEK 378


>gi|291540969|emb|CBL14080.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Roseburia intestinalis XB6B4]
          Length = 385

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 152/378 (40%), Gaps = 36/378 (9%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+ D+T F+ E GGQ  D G   G  +                      +  L    +
Sbjct: 33  YHVILDRTLFFPEEGGQSPDKGTIDGIEVTDVQIKKD--------VITHSLKEPLAVGET 84

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID+ +R      HS  H+    + +         G  ++ + +  D      +T+ 
Sbjct: 85  VHGIIDWTHRFNNMQQHSGEHIFSGIVHSRF--GYDNVGFHLSDNIVTMDFN--GVLTAD 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E++ +E   N++I +NLPV     ++E+       + +      +VR+V++   D     
Sbjct: 141 EVREVETAANEVIVKNLPVKITYPSKEELKTLDYRSKIE--IEGQVRIVTIPGVD----- 193

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C   HV  TGEI +L + S S+ + G+ RI  ++G RA      + + + S++  L 
Sbjct: 194 VCACCAPHVKKTGEIGMLNVQSLSNYKGGV-RISILSGFRALEEERKKSQVISSISGTLS 252

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
            +Q  +   VE++ +  + L+   A+ K +L  + +        N +    +++D+  ++
Sbjct: 253 ANQELLPELVEKLKQSNQDLKYKLAQAKQKLVEQKMKEIPADQENVLLFE-TDLDTPVMR 311

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVL---GGG 866
           + ++ L +   +GI  +    +E   + +I   T+D           R  A +L    G 
Sbjct: 312 NAINGLVETH-AGICGIFVEKEEGGYNFIIGSKTKDC----------REIATLLREKTGA 360

Query: 867 GGGGRPHMAQSGGPNGNK 884
            GGG   M Q       K
Sbjct: 361 RGGGSAAMIQGSVSAEEK 378


>gi|240146561|ref|ZP_04745162.1| putative alanine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257201292|gb|EEU99576.1| putative alanine--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 385

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 152/378 (40%), Gaps = 36/378 (9%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+ D+T F+ E GGQ  D G   G  +                      +  L    +
Sbjct: 33  YHVILDRTLFFPEEGGQSPDKGTIDGIEVTDVQIKKD--------VITHSLKEPLAVGET 84

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID+ +R      HS  H+    + +         G  ++ + +  D      +T+ 
Sbjct: 85  VHGIIDWTHRFNNMQQHSGEHIFSGIVHSRF--GYDNVGFHLSDNIVTMDFN--GVLTAD 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E++ +E   N++I +NLPV     ++E+       + +      +VR+V++   D     
Sbjct: 141 EVREVETAANEVIVKNLPVEITYPSKEELKTLDYRSKIE--IEGQVRIVTIPGVD----- 193

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C   HV  TGEI +L + S S+ + G+ RI  ++G RA      + + + S++  L 
Sbjct: 194 VCACCAPHVKKTGEIGMLNVQSLSNYKGGV-RISILSGFRALEEERKKSQVISSISGTLS 252

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
            +Q  +   VE++ +  + L+   A+ K +L  + +        N +    +++D+  ++
Sbjct: 253 ANQELLPELVEKLKQSNQDLKYKLAQAKQKLVEQKMKEIPADQENVLLFE-TDLDTPVMR 311

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVL---GGG 866
           + ++ L +   +GI  +    +E   + +I   T+D           R  A +L    G 
Sbjct: 312 NAINGLVETH-AGICGIFVEKEEGGYNFIIGSKTKDC----------REIATLLREKTGA 360

Query: 867 GGGGRPHMAQSGGPNGNK 884
            GGG   M Q       K
Sbjct: 361 RGGGSAAMIQGSVSAEEK 378


>gi|313112949|ref|ZP_07798593.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624714|gb|EFQ08025.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 395

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 142/413 (34%), Gaps = 35/413 (8%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               S + A        +E   G    +  D T FY E GGQ  D G             
Sbjct: 15  TQCESTILA-----AEPDEKTGG--GRIALDGTVFYPEGGGQPADRGTLTLPDGTTLNVT 67

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
              + +GI  H             ++   ID++ R      H+  H+L   L  +     
Sbjct: 68  DVHEHDGILWHSVDALPESAVPGTAVSGCIDWEWRFDKMQQHTGEHILSGILHQMF--GA 125

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  + +R D +    I++  L++ E   N I+ Q++PV+     RE+  A    
Sbjct: 126 ENVGFHIGSEAVRMDTSVP--ISAEGLQAAELAANRIVWQDVPVLVSYPTREELAA--LV 181

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                +   +VR+V++   D        C GTH  +TG++  + I++  + + G+ R+  
Sbjct: 182 YRSKKEIEGQVRIVTIPGAD-----VCACCGTHTRTTGQVGQIKILASENYKGGV-RLSV 235

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           + GQRA        ++   + + L          V  I++EY  L+  H     QL   D
Sbjct: 236 VCGQRALLAAQAMRQRQAEIGALLSAKADQTAVAVHRIYDEYTALKFTHFGVCSQLF--D 293

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                          +  +D   L  +   L +        L    K      +     D
Sbjct: 294 ALAQLANPGENAIRTVPGLDPDGLHRLAVRLTEATTGLCAALTPTEK-GTGYCIAQADGD 352

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +        L +     L  G GGG+P + Q           A   V  FL++
Sbjct: 353 VRA------LTKALNAALN-GRGGGKPGICQGSC------AAAPEQVEEFLRE 392


>gi|332158482|ref|YP_004423761.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331033945|gb|AEC51757.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 404

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 143/364 (39%), Gaps = 23/364 (6%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           ++E    G+ V++  D+T FY E GGQ GD G   GD  ++ + +   +  G   H   +
Sbjct: 19  VLEVKKDGELVKIRLDRTIFYPEGGGQPGDRGVIEGDEFKVIV-ENTIEENGEIWHVGKL 77

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E  I +   S+ L +D++ R      H+  H+L   L  +     +  G  I  +  + +
Sbjct: 78  EGDIPKEGSSVKLKLDWEWRYGNMQIHTGQHILSAVLKKLYDLDTT--GFTIFGEYAKIE 135

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           V     ++   ++  E   N ++  N+PV            +        K   ++R+V 
Sbjct: 136 VN--GELSWDMIERAEIEANKVVWSNVPVKVEEYEELPPEVARELRKSVVKSKGKIRIVR 193

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           V   D        CGGTHVS TGE+ ++ ++        + RIE   G RA + L    +
Sbjct: 194 VGDVDA-----TPCGGTHVSRTGEVGVIKVLRFYKKSRDLWRIEFTCGYRAITKLDKLLK 248

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVN 795
                   +      ++ RV++I       +    + + ++             +I   N
Sbjct: 249 DYWLALDMMPNKNPPLLERVKDILSSLESREKKIEELRREIWKWKGESLLRRGIRIGGYN 308

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            + H I + + K+ ++      K     I++LVG        V+    E++  + +  +L
Sbjct: 309 VVYH-IEDWNMKDAQAFAVDFVKNNPGTILILVGSE-----YVIFAKNENV--KLSMREL 360

Query: 856 ARLS 859
            +  
Sbjct: 361 LKNV 364


>gi|320451353|ref|YP_004203449.1| alanyl-tRNA synthetase-like protein [Thermus scotoductus SA-01]
 gi|320151523|gb|ADW22901.1| alanyl-tRNA synthetase related protein [Thermus scotoductus SA-01]
          Length = 375

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 142/390 (36%), Gaps = 36/390 (9%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           +V      Q   VV  QT FY E+GGQ  DTG   G+  ++++     +    F      
Sbjct: 17  VVRAWSDEQGHHVVLSQTLFYPESGGQPADTGVLKGEFGQVRVL-YVFEEAKAFGDVVHR 75

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G +     +   ID+  R +    H+A H+L  AL    G H       ++ D     
Sbjct: 76  VDGPIPEGAEVEGEIDWNRRFRHMQRHTAQHILSQALLRAGGYHTIA----VSLDSPVST 131

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           V   + +  A+L+  E   N  +  + P+    ++ E+            K   +VR+V 
Sbjct: 132 VDLEEEVEEAKLQEAEALANFAVYADYPIEAFWVSEEELARYPLRRP--PKVQGQVRLVR 189

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   D      A CGGTH+ ++ +   + ++     + G  R+  + G  A      +  
Sbjct: 190 IGDFD-----LAACGGTHLRTSAQAGPIKVLKWERYKGGS-RVYFMAGWEALEDYHAKHA 243

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            L  LA     S   +   V  + EE   L+  + + K  L    L          +   
Sbjct: 244 LLSRLALSFSTSPLELEKPVRRLQEEVYALKGENLELKEALVEALLP-------RALEER 296

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +  V +  L  +   L    +   ++L   S E + + L    +++L+R  A        
Sbjct: 297 VLLVPAPVLGDLAKRLLSWSEKTFLLL---SPEGRFAALGPGRQEVLERLKA-------- 345

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               G  GGG+  + Q   P   K   A+ 
Sbjct: 346 ---LGAKGGGK-EVVQGSLPK-EKVAAALD 370


>gi|206901179|ref|YP_002251462.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Dictyoglomus thermophilum H-6-12]
 gi|206740282|gb|ACI19340.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Dictyoglomus thermophilum H-6-12]
          Length = 382

 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 157/402 (39%), Gaps = 45/402 (11%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           I +    + +        +  D+T FY E GGQ  D G  IGDG ++ +  V ++   I+
Sbjct: 13  IFRWKSRIGKIKQEGDFLLSLDETIFYPEGGGQPSDKGEIIGDGWKILVDYVFEEDGIIW 72

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                      +    + + ID   RR+    H+A HLL   L       +   G  I  
Sbjct: 73  HKGKKSGERFPKVGEVVDIFIDKDLRREYMEQHTAQHLLSAILEK--EYSLETTGFQIFE 130

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D  + ++ +      + +K +E+ VND I +N+PV                       ++
Sbjct: 131 DHTKIEIPYKGLNPESFIKEVEEKVNDFIGKNIPVSIYW------------------KDE 172

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
           + R+V +   D        CGG HV + GE+ +L IV          R+E + G+R    
Sbjct: 173 KTRIVEIPGLD-----VNPCGGLHVKNLGELRVLKIVDFYRKNNIYWRVEFVAGRRVIKR 227

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCH 789
           L  ++++ K +   L     ++V  VE +  +   L+    K K +LN            
Sbjct: 228 LEEREKEYKKIKELLGNP--DIVEGVEILLVKIENLERQVKKFKEELNSYRADLLLKDAI 285

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
           ++     +  I+ +++ ++LK +   L  K   GI+ ++  S+ +       V  D+ D+
Sbjct: 286 EVGGYKLILKIL-DLEMEDLKHIAQRLLAK--EGILGVLFNSQGQGFVFGSKVENDIWDK 342

Query: 850 FNAVDLARLSAKVLGGG-GGGGRPHMAQSGGPNGNK-ADQAI 889
                  R    +L  G  G    +  Q    N +K  ++ +
Sbjct: 343 ------VRNI--LLSNGWRGSKEGNFLQGKIENPSKLIEEIL 376


>gi|327275562|ref|XP_003222542.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like [Anolis
           carolinensis]
          Length = 542

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 140/395 (35%), Gaps = 31/395 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           Q   V+ + T  + E GGQ  D G   G  +             I           L   
Sbjct: 169 QGYHVILEDTILFPEGGGQPDDRGLMNGIPVLRVTRQGPDALHFIQT--------PLEPG 220

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D+  R      HS  HL+      + G   +          +  D +    +T
Sbjct: 221 SEVQLELDWDRRFDHMQQHSGQHLITALADLMFGFKTTSWELGRQRSTIELDTS---SMT 277

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGG 687
             ++ ++E +VND I   +PVV R     D       +  L   +   VR++S+E  D  
Sbjct: 278 PEQVAALEQSVNDKIRARVPVVVREFAVGDPEVEMVRSRGLPDDHTGPVRIISIEGIDAN 337

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                +C GTHVS+  ++ ++ ++     +     +  + G R    L       K+L S
Sbjct: 338 -----MCCGTHVSNLSDLQVVKLLGTEKGKKNKTNLVFLAGNRVLKTLERNHTTEKALTS 392

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
            LK      V  V+ +    ++LQ  +      L V      K         ++   D  
Sbjct: 393 LLKNGPEEHVEAVKRLQNSLKQLQKNNLNLLRDLAVLTAQSFKNNMAQEPVFVLHRKDGD 452

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGG 865
                M+ +  +I +   ++     ++KA+   L+    + +++     L    A++L G
Sbjct: 453 S--EFMNIIANEIGNEKTLVFLSVGDEKAAGLFLLAGPPETVEK-----LGPRVAELLEG 505

Query: 866 GGGG--GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            G G  GR    Q      ++  +    +  F+ +
Sbjct: 506 KGAGKHGR---YQGKATRMSQRAEVETLLRGFINE 537


>gi|313125945|ref|YP_004036215.1| alanyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312292310|gb|ADQ66770.1| alanyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 400

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 74/362 (20%), Positives = 132/362 (36%), Gaps = 16/362 (4%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E    A S    +V  DQT FYAE+GGQ  D G   G  +               V H +
Sbjct: 13  EFDAAATSVDGRDVTLDQTYFYAESGGQPADRGTLGGIPLDDVQKVDGN------VVHTL 66

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     ++   ID   R      H+A+H+L+ A   IL   +   G  I+P+ +R 
Sbjct: 67  ASAPDFDEGETITGVIDDDFRTYCMRAHTASHVLYGAGRRILS-DLGYGGFDISPEKVRV 125

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-RV 678
           D   +  I    L  +E  VN  +    PV    +  E+A      A         +   
Sbjct: 126 DFVTTTEIDDEVLVELERLVNRAVWDARPVSWEEVPAEEAFERDDVAFNTKTEEGVMGDS 185

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
            ++          A CGGTHVS+T EI  + ++  S+   G+ R+E   G          
Sbjct: 186 DTIRLVTVEDWDVAACGGTHVSNTLEIGPVTVLGRSNPGEGLTRVEFAVGPTGIDRRATV 245

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK---IADVN 795
                  A  L+ S  +       +  E + ++    K + +L  E ++  +        
Sbjct: 246 HRAALDTACELETSVDDTAEAAASLRAEKQSIEAERRKLESELLTERITEFETLAKNGAQ 305

Query: 796 FMSHIISEVDSKELKSVM-DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
           +   +I   DS +      D ++ + ++ ++    +   ++  +++    D     +A D
Sbjct: 306 WHVGVIDGFDSNDAGEAAKDVVRDENETDVV--AAVGAGERPYLVVAAGSD--SGVDAGD 361

Query: 855 LA 856
           + 
Sbjct: 362 VV 363


>gi|169835921|ref|ZP_02869109.1| alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 69

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS 162
           K+ AI  AW+ +T+   L + RLY+TV++ D+EAF LW     ++ ++I R   +DNFW 
Sbjct: 1   KKDAIAYAWEFVTQVLKLPKDRLYVTVHESDDEAFALW--EQHIAKERIYRFGDHDNFWQ 58

Query: 163 MAETGPCGPCS 173
           M +TGPCGPCS
Sbjct: 59  MGDTGPCGPCS 69


>gi|209552296|ref|YP_002284211.1| alanyl-tRNA synthetase class IIc [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539408|gb|ACI59340.1| alanyl-tRNA synthetase class IIc [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 292

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 109/340 (32%), Gaps = 70/340 (20%)

Query: 9   TTFLEFFQKNG--HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTVQ 65
             + +F    G     +PS  + P  D T +F ++GM  +K +F+    P +   V   Q
Sbjct: 14  QHYGDFCLSKGIDFTRIPS--VRPH-DNTTLFCSAGMQQYKPLFS---DPSHIGTVANSQ 67

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKER-----AIQLAWDLLTKEFDL 120
            C+R G    DL+ +G    H   F MLG FSF            AI    + L     L
Sbjct: 68  ACLRMG----DLEEIG-DGTHLLHFTMLGLFSF-----REMTIGNAIDFWLEFL-ATLGL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
                ++T++ +         + + L   ++  I   +  WS       G C+E F+  G
Sbjct: 117 VPD--HVTIHPDRL------MEWTPLYRGRVAIIADPECTWSDGSI--RGYCTE-FYKHG 165

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                            +EI N+V                   ID G G ER+  ++   
Sbjct: 166 -----------------VEIGNIV------NPLGT-------CIDVGFGAERLDMIVNGT 195

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
             +   D  + L +    +    Y   N     V+   LR    +      P        
Sbjct: 196 PQD---DALETLCETVATIVESGYRPGNKEQGYVLRKLLRRIHKMGGTLDHPFFTEEVER 252

Query: 301 LRRIMRRAMCYARLLG-YTEPLMMHLLPALCTEMGSAYPE 339
            +R+  + +         +             E+G    E
Sbjct: 253 QKRLRAKYLRLRDRHAEMSPDWWFDTHGIDLAELGETLDE 292


>gi|328471106|gb|EGF42011.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus MTCC 5462]
          Length = 74

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 2  SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4  MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 63

Query: 62 TTVQKCVRAGGKHND 76
          T  QK +R     ND
Sbjct: 64 TNAQKSIRT----ND 74


>gi|115648515|ref|XP_001203711.1| PREDICTED: similar to SJCHGC03396 protein, partial
           [Strongylocentrotus purpuratus]
 gi|115670729|ref|XP_795191.2| PREDICTED: similar to SJCHGC03396 protein, partial
           [Strongylocentrotus purpuratus]
          Length = 63

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 40/63 (63%), Gaps = 5/63 (7%)

Query: 46  FKNIFTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG 100
           FK IF G   P             QKC+RAGGKHNDLD+VG+   HHTFFEMLG +SFG 
Sbjct: 1   FKPIFQGTVDPNSDLGRLARAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGTWSFGD 60

Query: 101 YFK 103
           YFK
Sbjct: 61  YFK 63


>gi|292656836|ref|YP_003536733.1| alanyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291371887|gb|ADE04114.1| alanyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 398

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 87/400 (21%), Positives = 141/400 (35%), Gaps = 28/400 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
                    VV D+T FY E GGQ  D G   G  +    T+                 G
Sbjct: 18  TVTRVDGRSVVLDETYFYLEGGGQPADRGVLGGVDVEHVRTNADGAVVHDLAADPGFAAG 77

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
              T       +D   R      H+A+H+L+ A   I    +   G  I+ + +R D   
Sbjct: 78  DEATG-----VVDDDFRTYCMRAHTASHVLYGAGRRIFD-DLGYGGFDISAEKVRVDFET 131

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVR 677
           S  +    L  +E  VN  +  +  V    ++  +A      A             + VR
Sbjct: 132 STEVDDDALVELERLVNRAVWDSREVSWEEISVAEARDREEIAFNVKTEEGVFSESETVR 191

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           VVS++  D      A CGGTHVS+T EI  + ++  S+   G+ R+E   G  A      
Sbjct: 192 VVSIDGWDW-----AACGGTHVSNTVEIGPVEVLGRSNPGEGLTRVEFAVGSSAVDRRAA 246

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADV 794
                   A  L  +   +            +L+   A  K ++    + D    +   +
Sbjct: 247 VRGSAYEAARALGTNLDGLGESAAAAAAAREELESELADLKSEVLRSRLADFETVERDGL 306

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
            +    +S  D+ E+       +    + + + V + +     V++    D      A  
Sbjct: 307 TWNVGAVSGFDANEVGEAAKEARD--GAAVDVFVAVGESDAPFVVVASAGDAA----AGK 360

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           +        GGGG GG P  AQ GG  G  AD+ +A +  
Sbjct: 361 VVAEVTDEFGGGG-GGGPTFAQGGG-LGAPADEVLAYLRD 398


>gi|15805529|ref|NP_294225.1| alanyl-tRNA synthetase-like protein [Deinococcus radiodurans R1]
 gi|6458192|gb|AAF10082.1|AE001909_4 alanyl-tRNA synthetase-related protein [Deinococcus radiodurans R1]
          Length = 409

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 141/392 (35%), Gaps = 17/392 (4%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                V  Q  EV    T FY E+GGQ  D G     G   ++T  +K      V H + 
Sbjct: 34  FAASVVDVQGQEVALAATAFYPESGGQSSDVGLLRWPGSEARVTHARKDKATGTVWHRVD 93

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                     +   +D   R + +  HSA HLL  A   +  +    + +   P+     
Sbjct: 94  GELPP-VGAEVTGEVDPGPRWRHTQRHSAEHLLAQAFRRVNPAFEVASVNMTGPECTIDF 152

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +           +++      +    L + T I+   + +         +K   +VR+V 
Sbjct: 153 LGDPGEADIRAAEALLRET--LGRDELTLETPIVPEAELVNYPLRRE--SKVGGQVRLVM 208

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
               DG     + CGGTHV        + I+    +R G  R+  + G+ A  +L G  +
Sbjct: 209 FRGSDGDFFDVSACGGTHVPGAAMCAPVVILRTERVRGGQVRVVFMAGEEASEYLSGVYQ 268

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
             ++LA         +  RV  +  +    +      + +L  + ++         +   
Sbjct: 269 SARTLAQEFSAPVDKLPERVAALRADLSAARADADALRARLAAQLVAAASAEGTPPL--R 326

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +  +D+  L  +   L   + +G + L  +    +  V     +       A D+ R +A
Sbjct: 327 LLTLDNAAL--LAPVLTA-VPAGEV-LAAVGPGGRCGVASAHPD-----VKAGDVLR-AA 376

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             + GG GGG+P +AQ    +     +A+  V
Sbjct: 377 LAVTGGKGGGKPDLAQGSTADEGGFLEAVRQV 408


>gi|213021625|ref|ZP_03336072.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 100

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 60/96 (62%), Gaps = 2/96 (2%)

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           ++ ++ K L++++D L+ ++ S +I+L  +  E K S++  V++D+ DR  A +L  + A
Sbjct: 2   LAGIEPKMLRTMVDDLKNQLGSTVIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVA 60

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 61  QQV-GGKGGGRPDMAQAGGTDAAALPAALASVQGWV 95


>gi|310801123|gb|EFQ36016.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 442

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/396 (17%), Positives = 140/396 (35%), Gaps = 25/396 (6%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +   + F  +  + E GGQ  D G             + +  E + +         L   
Sbjct: 61  ETWLIEFADSVLFPEGGGQPSDHGTITPLSNPGATPILIEFVERVGLRCVYHSPQPLVPG 120

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++   +D+Q R      H+  HLL   ++T    +    G   +      D+   +  +
Sbjct: 121 ETVRQEVDFQRRWDHMQQHTGQHLLSAVMNTYDDLNTLGWGMGKSGAMNYVDL--PRKPS 178

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            AEL++I+   NDII  + P+     +               +    VRV+ +   D   
Sbjct: 179 EAELQAIQARCNDIIRSSAPITVETPDDAKTHKMPED---YDQAKGVVRVIRIGEID--- 232

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C GTH+S T  I L+ +     +     R+    G RA +        + +++  
Sbjct: 233 --RNTCCGTHLSQTSHISLILVHHGEPVHGKNFRLYFSAGDRAINLAASSISAMGTISKL 290

Query: 749 L--KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI--ADVNFMSHIISEV 804
           L  K +   VV  V+ +      L+    K    +   +    K        +    ++ 
Sbjct: 291 LSSKNTADEVVQSVKAVQASAADLKKREKKLLSDIAEFEAEAVKARLQTSKSVWIHRADG 350

Query: 805 DSKELKSVMDALQKK-IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           ++  +K V  +++   +  G + +V   +EKK+  L+V+ E      +AV        ++
Sbjct: 351 NADFVKWVAASIKDAVMACGGVAVVATGEEKKSGQLVVLGEK--SSVDAV--VPKIKDIV 406

Query: 864 GGGGGGGRPHMAQS--GGPNGNKADQAIAGVASFLK 897
            G  GGG     Q   G  +      ++  +   ++
Sbjct: 407 TGVKGGGAGDKWQGKVGAWD----KDSLETLRKLVE 438


>gi|313905304|ref|ZP_07838671.1| Threonyl/alanyl tRNA synthetase SAD [Eubacterium cellulosolvens 6]
 gi|313469915|gb|EFR65250.1| Threonyl/alanyl tRNA synthetase SAD [Eubacterium cellulosolvens 6]
          Length = 409

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 140/369 (37%), Gaps = 26/369 (7%)

Query: 516 DQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           +   FY E GGQ GD G      D   + + D +++ + I +         +     ++ 
Sbjct: 39  EDCIFYPEGGGQPGDRGTLTYGTDMKTVHVLDTKRQGQDIVL----YTDEPVEEGTQVLQ 94

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D++ R      HS  H+    +           G  +        V  + P+T  ++ 
Sbjct: 95  QLDWEFRFSNMQGHSGEHIFSGIVHR--KFGYDNVGFHMGD---TIRVDFNGPLTWEQIL 149

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +E+  N  + +N P+   + +  +       +    +   ++R+V++   D        
Sbjct: 150 EVENEANRYVWKNEPIEITVGSEAEVADIDFRSK--KELEGKIRLVTIPGAD-----VCA 202

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           C G HV  TGEI ++  +S  S + G+ R+E + G +A S+L G + +   +A  L V  
Sbjct: 203 CCGLHVRRTGEIGMIKCISAQSYKGGV-RLELLCGAKALSYLQGIESQNSQIARDLSVKP 261

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
                 VE +  +  + +   A    +     ++     D   +     E+   +++   
Sbjct: 262 EETALAVERLRNDLMEEKQKAAANMNRYFRARIAELHTDDGGVVIDFEKEMSVTDIRRFC 321

Query: 814 D-ALQKKIQSGIIMLVGISKEKKA---SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           D  L++       +L     E  A   +  I  T+ ++      + A+   + L  G GG
Sbjct: 322 DWILKQGAAKVACVLAPRDPEDAAAGWNYTIGTTDAVVCNL--REKAKEFNEALN-GRGG 378

Query: 870 GRPHMAQSG 878
           G P M Q  
Sbjct: 379 GSPEMIQGS 387


>gi|257440072|ref|ZP_05615827.1| putative DHHA1 domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257197424|gb|EEU95708.1| putative DHHA1 domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 394

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 129/387 (33%), Gaps = 29/387 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             +  D T FY E GGQ  D G        +       +  G+  H              
Sbjct: 33  GRIALDGTVFYPEGGGQPADRGTLTLADGTVLTVTDVHEQAGVIWHMVTSLPAGAVPGAE 92

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
               ID+  R      H+  H+L   L ++        G  I  D +R D      I++ 
Sbjct: 93  AAQAIDWAWRFDKMQQHTGEHILSGILHSMF--GAENVGFHIGSDAVRMDTNIP--ISAE 148

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            LK+ E   N II +N+PV      RE+       +    +   +VR+V++   D     
Sbjct: 149 GLKAAETAANRIIWENVPVNITYPTREELAILTYRSK--KEIEGQVRIVTIPGAD----- 201

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C GTH + TG +  + I++  + + G+ R+  + G RA         +   + + L 
Sbjct: 202 VCACCGTHTAFTGAVGQIKILAAENYKGGV-RLSIVCGGRALEAAQAMRARQAEIGALLS 260

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                    V  +++EY  L+  H     QL   D    ++        I+  +D   L 
Sbjct: 261 AKASETANAVHRVYDEYTALKFTHFGLCSQLF--DALAAQVTPGADAIRIVPGLDPDGLH 318

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG---GGG 867
            +   L +        L     EK     +           A    R   K L     G 
Sbjct: 319 RLAVRLTEATTGLCAAL--TPNEKGTGYCLA---------QAGGDVRALTKALNAALNGR 367

Query: 868 GGGRPHMAQSG-GPNGNKADQAIAGVA 893
           GGG+P + Q        +  + +    
Sbjct: 368 GGGKPGICQGSCAAEPEQVKEFLRKTK 394


>gi|325679368|ref|ZP_08158953.1| threonine/alanine tRNA ligase second additional domain protein
           [Ruminococcus albus 8]
 gi|324108965|gb|EGC03196.1| threonine/alanine tRNA ligase second additional domain protein
           [Ruminococcus albus 8]
          Length = 383

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 144/390 (36%), Gaps = 35/390 (8%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +G+  E+  D++ F+ E GGQ GD G        +++ D  +K   +           + 
Sbjct: 24  AGKYYELTLDRSAFFPEGGGQKGDVGLIDS----VKVLDTYEKNGEVVHK----CTAPIE 75

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             M +   +D   R +   NHS  HLL   +           G  +  D +  D+     
Sbjct: 76  AGMQVCGEVDADIRLRRMQNHSGEHLLMGVIHRKT--GFENVGFHLGSDDVTLDL--DGV 131

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           I +  L   E   N  IA +LPV     + E        + L     + VR+V++E  D 
Sbjct: 132 IPTETLIECEFLANKAIAADLPVTISYPDSESLKTLEYRSKLE--MTENVRIVTIEGVD- 188

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  C   HV+STG+I ++ ++S  S + G  R+  + G  A   +  + ++L +++
Sbjct: 189 ----VCACCAPHVASTGQIGIIKVLSAESYKGGT-RLHILCGLDAFELIRNRMDELSAIS 243

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
             L      ++ + + + +E   L+   A  + +     +S    +           +++
Sbjct: 244 RLLSAKPEKILEQTKRLIDENDALKRQLADIEQRKAARIISSLSNSTRGSFCVFTEGLNT 303

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG-- 864
             ++ + +    K+  G   +   ++     ++   ++ L          R  +  +   
Sbjct: 304 ASMRDIANEAV-KLTDGAAGIFCQNENGWNYIIA--SDSLP--------LRSMSAQINSA 352

Query: 865 -GGGGGGRPHMAQSGG-PNGNKADQAIAGV 892
             G GGG   M Q          +  I  +
Sbjct: 353 LNGKGGGSDKMLQGSCMAERTAIEDVIKKL 382


>gi|169596416|ref|XP_001791632.1| hypothetical protein SNOG_00969 [Phaeosphaeria nodorum SN15]
 gi|160701306|gb|EAT92464.2| hypothetical protein SNOG_00969 [Phaeosphaeria nodorum SN15]
          Length = 440

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/404 (15%), Positives = 139/404 (34%), Gaps = 21/404 (5%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
                E+  S +   V    +  + E GGQ  D G  I               +   +  
Sbjct: 53  DPSKFEQTGSSKTWLVELADSVLFPEGGGQPTDHGSIIPLNEDKADPIAITSIQRHGLQC 112

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L     +  T+D+  R      H+  HLL   +       +   G  +   G 
Sbjct: 113 IHFSPAPLAPGTKVKQTVDFTRRWDHMQQHTGQHLLSAVM---DSLDLPTLGWNMGAAGE 169

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
              +   +  +  E++SI++  N++I  N+ +        +   S +  L   +    VR
Sbjct: 170 MNYIELPRKPSDEEIRSIQNKCNELIRGNMSITVE---TPEGKGSDSLPLDYDREKGVVR 226

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            + +   D        C GTH+  T  I  + +   +S+R    R+    G RA +    
Sbjct: 227 FIKIGDLDYN-----ACCGTHLKQTSHIGAILLHHTASVRGTNCRLYFTAGDRAINMATE 281

Query: 738 QDEKLKSLASFLKVS--QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIAD 793
               L+S+A  L  S    +V   V+ + ++  + +    +   ++   +      ++  
Sbjct: 282 SINGLRSIAVSLSTSAAPADVSSAVQRLGDQVSEARKREKRMLAEIAKFEGERIKKELGQ 341

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           +  +           +  V+  +++ ++  +++L     +   S++++   +L++   A 
Sbjct: 342 IECVLSYRPTDGLDFINLVIFEIKEAVKERVVVLCSGEVKTAGSLVVLGKPELVESMAAK 401

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD-QAIAGVASFL 896
              +     +    GGG+    Q       K + +A+      +
Sbjct: 402 --VKNVVSSV---KGGGKGEKWQGKVTEWQKGEIEALKKAIEEV 440


>gi|160937038|ref|ZP_02084401.1| hypothetical protein CLOBOL_01927 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439939|gb|EDP17687.1| hypothetical protein CLOBOL_01927 [Clostridium bolteae ATCC
           BAA-613]
          Length = 390

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 149/388 (38%), Gaps = 31/388 (7%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           VK+ +   E  EE+  G    V  +QT FY E GGQ  DTG   G    + +  V +K E
Sbjct: 13  VKSFMCTVEHCEESGKG-TWLVTLNQTGFYPEGGGQPYDTGTLNG----ISVVSVHEKGE 67

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            +    A      +         ID+Q R      H+  H+L   +           G  
Sbjct: 68  QVIHELAQ----PIEEGTLAEGIIDWQRRYDNMQLHTGEHILSGLVHKHF--GYDNVGFH 121

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  + +  D      I   +L  +ED  N ++  N+PV     + ++       +    +
Sbjct: 122 MGAEEVTVDFN--GIIEPEDLDWLEDEANQLVYANVPVKVLYPSEDELKTMEYRSK--KE 177

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            +  VR+V V   D        C GTHV +TGE+ ++ I S    + G+ R+  + G+RA
Sbjct: 178 LSGLVRIVEVPGAD-----VCACCGTHVENTGEVGIIKIRSMIHYKGGV-RLSMLCGRRA 231

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                 + +    +++ L      V   VE++  + +     +   KL  ++  L   + 
Sbjct: 232 LLDYRDRLKDEARISNLLSAKLVQVPDAVEKLKSDSQD--KDYLIGKLGSSLLALKAGQF 289

Query: 792 -ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDR 849
                 +     ++   +++     L ++ ++G+  +   +  + +    +  +     R
Sbjct: 290 PESTEPLIVFEEDLTPIQVRQYATLLYEQNKAGVAAVCSGNDRDSEYHYALGSS-----R 344

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +   L++     L  G GGG   MAQ 
Sbjct: 345 MDMRALSKAMNSRLS-GRGGGSSLMAQG 371


>gi|260361823|ref|ZP_05774839.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|308114473|gb|EFO52013.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030]
          Length = 79

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 2/79 (2%)

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           + SG+++L  ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG
Sbjct: 1   MGSGVVLLANVT-DDKVGLIAGVTKDLVGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGG 58

Query: 880 PNGNKADQAIAGVASFLKK 898
            + +   +AI  V  +L++
Sbjct: 59  TDVSALPEAIKTVQPWLEE 77


>gi|257458286|ref|ZP_05623435.1| threonyl and alanyl tRNA synthetase domain protein [Treponema
           vincentii ATCC 35580]
 gi|257444313|gb|EEV19407.1| threonyl and alanyl tRNA synthetase domain protein [Treponema
           vincentii ATCC 35580]
          Length = 400

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 140/364 (38%), Gaps = 24/364 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+    T FY E GGQ GD G    +  R +        +        +    L     
Sbjct: 31  YEIELSDTAFYPEGGGQPGDKGVLFAE-GRQERAIHVSDTQFEGERIVHIADAKLAAGTK 89

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +D+ NR      HS  H++   LS          G  +    +  D     P+   
Sbjct: 90  VHGVLDWVNRCDNMQGHSGEHIITGILSKTY--GYENIGFHMGESFITIDFN--GPLDDG 145

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           ++   E   N+I+ +NLP+     + E+       + +    +  VR++++   D     
Sbjct: 146 QVLGAERRANEIVRENLPIQESFPSAEERKTMQYRSKIE--LSGTVRIITIPGLD----- 198

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           S  C GTHV++TGEI L+ I++ ++ + G+ R+E + G++A      + E++++++  L 
Sbjct: 199 SCACCGTHVTATGEIGLIKIINFTNRKKGV-RLEVLCGRKAVLAYEQEMEQVRAISRCLS 257

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCHKIADVNFMSHIISEVDSKEL 809
                V   VE++  E  KLQ    +   + L  +  +    A           +  + L
Sbjct: 258 AKPTEVQEAVEKLNAEKGKLQQQLHEMTEKYLKQKAETAADTAGAPVYFE--DGLSIEYL 315

Query: 810 KSVMDALQKKIQS-GIIMLVGISKEKKASVL---IVVTEDLLDRFNAVDLARLSAKVLGG 865
           +   + L    +      L  +  E   S     ++V+  +  + +     +     L G
Sbjct: 316 RCFCNQLLATGKRHTCAALSAVEAEGAQSPAYNYVIVSNVIDLKLH----VKTLNGQLNG 371

Query: 866 GGGG 869
            GGG
Sbjct: 372 RGGG 375


>gi|37784160|gb|AAO86574.1| alanyl-tRNA synthetase [Hydrogenobacter hydrogenophilus]
          Length = 57

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query: 40 NSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
          N+GMV FKN+F G EK  Y    + QKC+R  GKHNDL++VG T+RHHTFFEM G F
Sbjct: 1  NAGMVQFKNVFLGIEKRPYTRAVSCQKCLRVSGKHNDLESVGYTSRHHTFFEMKGEF 57


>gi|241258899|ref|YP_002978783.1| alanyl-tRNA synthetase class IIc [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863369|gb|ACS61032.1| alanyl-tRNA synthetase class IIc [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 292

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 111/338 (32%), Gaps = 66/338 (19%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTVQKC 67
             + +F    G   +   S+ P +D T +F ++GM  +K +F+    P +   V   Q C
Sbjct: 14  QQYQDFCLSKGINFIRIESVRPHDD-TTLFCSAGMQQYKPLFS---DPSHSGTVANSQAC 69

Query: 68  VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKER-----AIQLAWDLLTKEFDLDQ 122
           +R G    DLD +G    H   F MLG FSF            AI    + L +   L  
Sbjct: 70  LRMG----DLDEIG-DGTHLLHFSMLGLFSF-----REMTVGNAIDFWLEFL-ETVGLVP 118

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
              ++T++ +         + + L   ++  +   +  WS  + G  G C+E + D    
Sbjct: 119 D--HVTIHPDRL------VEWTPLYGGRVPIVPDPECIWS--DGGISGYCTEFYKD---- 164

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                          +EI N+V                   ID G G ER+  ++     
Sbjct: 165 --------------GVEIGNIV------NPLGT-------CIDVGFGAERLDMIVSGAPQ 197

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +   D    L +    +    Y   N     V+   LR    +      P         +
Sbjct: 198 D---DALGTLCETVMTIVESGYRPGNKEQGYVLRKLLRRIHKMGGTLDHPFFAEEVERQK 254

Query: 303 RIMRRAMCYARLLG-YTEPLMMHLLPALCTEMGSAYPE 339
           R+  + +         +            +++G    E
Sbjct: 255 RLRAKYLRLRDRHSEMSPDWWFDTHGIDLSDIGETMDE 292


>gi|302671191|ref|YP_003831151.1| alanyl-tRNA synthetase family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395664|gb|ADL34569.1| alanyl-tRNA synthetase family protein [Butyrivibrio proteoclasticus
           B316]
          Length = 409

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 154/434 (35%), Gaps = 45/434 (10%)

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
              +   +   S   A V + E  E      + EVV D+T F+ E GGQ  D G    D 
Sbjct: 2   TKELYYESAYISEFFAEVIKCERSENKAYKGRYEVVLDRTAFFPEQGGQGSDIGVLEFDD 61

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +               H A      +     +   ID+  R      H+  H+    ++
Sbjct: 62  GKSVAGIEHVSIGSEIRHIADK---EIPVGTRVRGVIDFARRFSNMQQHTGEHIFSGLVN 118

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
                  +  G  ++   +  D      +T+  ++ +E   N+ I  NL V+      + 
Sbjct: 119 --SEYGYNNVGFHLSDSEVTMDY--DGVLTAENIRKLEIKANEAIWANLDVICEFPEADK 174

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                  +    + +  VR+V++   D        C   HV+ TGEI +L +V   + + 
Sbjct: 175 LSEIPYRSK--KELSGDVRIVTIPGID-----ICACCAPHVNRTGEIGMLKVVGLQNYKG 227

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ R+  + G+RA  +L G+ + +  L + L  S   VV  V+  +++   ++   ++ +
Sbjct: 228 GV-RVNILCGRRALLYLQGEHDIVGELTALLTTSADKVVTSVKRAFDDNSNMKSELSQAR 286

Query: 779 LQLNVEDLS------CHKIADVNFMSHIISEV--------DSKELKSVMDALQKKIQSGI 824
             L   ++S         I+   F++    ++        DS  L+ ++++L +  +   
Sbjct: 287 ETLIGYEISEIVQVTSSDISGGIFVNAAEDDIYVVKDNAYDSNMLRKLVNSLSEHKKGYC 346

Query: 825 IMLVGISKEKKASVLI--VVTEDLLDRFNAVDLARLSAKVL---GGGGGGGRPHMAQSGG 879
               G  +     ++      +D           +     L    G  GGG   M Q   
Sbjct: 347 GAFAGSQESGYRFIIASGASGKDC----------KALCDKLRTEFGAKGGGSNAMVQGS- 395

Query: 880 PNGNKADQAIAGVA 893
            N       +  + 
Sbjct: 396 LNVADLRSVLDSLT 409


>gi|331085926|ref|ZP_08335009.1| hypothetical protein HMPREF0987_01312 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406849|gb|EGG86354.1| hypothetical protein HMPREF0987_01312 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 326

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 75/350 (21%), Positives = 134/350 (38%), Gaps = 28/350 (8%)

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
              +   +   S   AIVQ+        SG   E++ D+T F+ E GGQ  DTG   G  
Sbjct: 2   TEKLFYQDSHRSTFTAIVQEVRP-----SGNGYEIILDRTAFFPEGGGQSSDTGSLGGVS 56

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +           + I         G L     +   ID+  R      H+  H++   + 
Sbjct: 57  VS--------DVQEIDGKIIHYTDGPLVEGTEVEGCIDWTERFSKMQQHTGEHIVSGLIH 108

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            I G H    G  +  D +  D      +   +L  IE   N+ +A+NLPV       E+
Sbjct: 109 KIYGYH--NVGFHLGTDSVTLDFN--GGVPKEKLHEIEQLANEAVAKNLPVQVLYPTDEE 164

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                  + +      +VR+V ++  D        C   HV  TGEI L+ +V   + + 
Sbjct: 165 LSKISYRSKIE--IEGQVRIVVIDGYD-----VCACCAPHVKQTGEIGLIKLVGMQNYKG 217

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ RI  + G RA      +++  + +A  L   +      VE + EE    +   A+ +
Sbjct: 218 GV-RISMLCGFRALEDYYQKEKNNREIAVMLSAKEYETAVEVERLQEELAMKKAKIAELE 276

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA-LQKKIQSGIIML 827
            +   + +    I+    +  +  E D    + +++  L+K+ + G  + 
Sbjct: 277 RKFLEQKVETLDISGE--IVCLFEETDPVMTRELVNLLLKKRSKDGSCLF 324


>gi|297565180|ref|YP_003684152.1| Threonyl/alanyl tRNA synthetase SAD [Meiothermus silvanus DSM 9946]
 gi|296849629|gb|ADH62644.1| Threonyl/alanyl tRNA synthetase SAD [Meiothermus silvanus DSM 9946]
          Length = 398

 Score =  121 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 135/368 (36%), Gaps = 22/368 (5%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV----HHAIVE 561
             G K   V DQT FY  AGGQ  DTG   G  +        +   G+          V 
Sbjct: 22  SEGGKHYAVLDQTLFYPTAGGQANDTGTLDGVRVVDVREASFRGEGGVDGKAKGEVVHVL 81

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              L     +   +D+  R +    H+A H L  A     G         +   G    +
Sbjct: 82  EAPLPEGQEVQGELDWTRRYRHMQRHTAEHTLAQAFWRAAGWETLA----VNMSGPVCTI 137

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
             S     A ++  E   N  +  N PV T  +   +  +         K + R+R+V +
Sbjct: 138 DFSGEPNPATIQQAEALANWAVYANTPVKTFWLEDSEVGSYPLRRA--PKVSGRIRIVEI 195

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
           E  D        CGGTHV+ TGE   + IV     + G  R+  + G  A      +   
Sbjct: 196 EGWD-----MVACGGTHVARTGEAGPIKIVKYERYKGGT-RVYFMAGWEALETFHQEHAI 249

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           L  +A         V   +  + +E+ +L+  +   K +L  E +    +A+    + I 
Sbjct: 250 LTRVAEKFSAHYLEVEKPIHNLRDEFFRLKGENHALKEELA-ERVMRELLAEFPEHT-IF 307

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           ++V +  +++V   L +     ++ L+    E KA  ++       +   A  + +   +
Sbjct: 308 AQVPAVVIEAVGKRLAEW--PNVLALLVAPGEGKARFVLTKHHSRPEDLQA--IWKEVLE 363

Query: 862 VLGGGGGG 869
            LG  GGG
Sbjct: 364 PLGAKGGG 371


>gi|324520304|gb|ADY47605.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 283

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 94/254 (37%), Gaps = 46/254 (18%)

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL--- 742
           G   +   CGGTH+ + G I  L I  E +I  G RRI A+TG  A   +   D      
Sbjct: 30  GMNTAVEFCGGTHLHNVGHIGRLVISVEEAIAKGTRRIVALTGPEAVRAVQRADRIEARV 89

Query: 743 --------------------KSLASFLKVSQGNVVG------RVEEIWEEYRKLQLIHAK 776
                               K     +      +        R +EI EE + +Q +  K
Sbjct: 90  RAAQKFVANDRSIVTDRKRFKDANKMVNELIEEINQAQLPYWRKDEIREEAKGIQKLLDK 149

Query: 777 RK--LQLNVEDLSCHKIAD--------VNFMSHII-SEVDSKELKSVMDALQKKIQSGII 825
            +   +  V +   ++             F+ H+       K L + + +L+K      +
Sbjct: 150 LERDAKAAVTEKVMNEAKQLEGTLNDHTKFIVHVFGKGATGKALDAALKSLKKA---PAV 206

Query: 826 MLVGISKE-KKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           M   +++E  K +++  V +  +     A +      +V+ GG GGG+   AQ+ G   +
Sbjct: 207 MGFSVNEETGKVTIVAKVDKASVAAGLKAPEWISKVCEVV-GGRGGGKDMQAQATGDRID 265

Query: 884 KADQAIAGVASFLK 897
           +  +A+     F K
Sbjct: 266 RVPEAVQLANDFAK 279


>gi|91094383|ref|XP_971062.1| PREDICTED: similar to Alanyl-tRNA synthetase domain containing 1
           [Tribolium castaneum]
 gi|270014911|gb|EFA11359.1| hypothetical protein TcasGA2_TC011516 [Tribolium castaneum]
          Length = 409

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 143/391 (36%), Gaps = 31/391 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            EV+ + T  + E GGQ  D G      +   I    K    I           L     
Sbjct: 40  YEVILENTVLFPEGGGQPCDHGFLNDQPVYQVIRRGDKAVHFI--------EKPLNVGDD 91

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID+  R      HS  HL+   L                   +  D+     IT  
Sbjct: 92  VKGIIDWNRRLDHMQQHSGQHLISAVLIREFNFDTISWYLGEEVSYIELDIP---KITQE 148

Query: 631 ELKSIEDNVNDIIAQNLPVVT----RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           ++  +E+  N++I    PVV          E      +A  L   +   +RVV++E  D 
Sbjct: 149 QIDHVENICNELIRDQRPVVVNIFDENTPPEKLENYRSARDLPADHVGDIRVVTIEGIDS 208

Query: 687 GVHSSALCGGTHVSSTGEIMLLYI-VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                 +C GTHV++  ++  + +  SE S R     +  ++G R  + L    ++ + L
Sbjct: 209 N-----MCCGTHVTNLSQLQAIKLLHSEKSKRKDKVLLYFLSGNRVINRLDNCLKREQKL 263

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
            + LK +       VE++ +  + L          L V + +  K +   +      E D
Sbjct: 264 TALLKTNPVQHPEFVEKLVQGNKSLNKNLQTVLKDLAVYEAAKLKESKEKYFFLHRKEAD 323

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKA-SVLIVVTEDLLDRFNAVDLARLSAKVLG 864
              +  +   L++  +S I   + +  EK A ++++   E  +      DL+    ++L 
Sbjct: 324 PTFMSIL---LKEAGRSDIFQFLSVGDEKGAGNIVLYGDEKAIS-----DLSPKICELL- 374

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           GG G  + +  Q+   N +    A+  V  +
Sbjct: 375 GGKGAAQGNKFQAKVTNLSNHKSAVKLVKEY 405


>gi|289580836|ref|YP_003479302.1| threonyl/alanyl tRNA synthetase SAD [Natrialba magadii ATCC 43099]
 gi|289530389|gb|ADD04740.1| Threonyl/alanyl tRNA synthetase SAD [Natrialba magadii ATCC 43099]
          Length = 446

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 155/439 (35%), Gaps = 61/439 (13%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E  +     +  + + FY E+GGQ  D G   G  +        K+       H + E  
Sbjct: 18  EVTAIDGRRIWLETSYFYGESGGQPADRGTIDGAAVEDVQLADGKQV------HVMAEEP 71

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
             RT   ++ +ID+  R      H+A+H+L+ A   +L   +   G  I  + +R D+  
Sbjct: 72  TFRTGQRVLCSIDWAFRMYCMRAHTASHVLYGAGRRLLD-DLGYGGFDIGEEKVRVDLET 130

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND------RVR 677
           +  +    L  ++  VN  + ++ PV    +   DA      A       D      RVR
Sbjct: 131 TSDLDDETLLELDSLVNKAVWESRPVSWDDIPVADAREREDIA-FNEATEDGAFQKGRVR 189

Query: 678 VVSVEYEDGG--------------------------VHSSALCGGTHVSSTGEIMLLYIV 711
           +V++   D                                A CGGTHV +T EI  + ++
Sbjct: 190 IVTIGGADENGGNGTRARNRSSSGPTVTTSTDGSAEPWDVAACGGTHVRNTREIGPVTVL 249

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             S+   G+ R+E   G  A      +     +    L V    V   +  + +E   L 
Sbjct: 250 GRSNPGEGMTRVEFSVGPTAIDRRREEKATALTARQELGVPLEEVGDELTRLQDERDNLS 309

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFM-------------SHIISEVDSKELKSVMDALQK 818
                 +  L  + L      + + +                 + VD+ +   +      
Sbjct: 310 AEIQTLQRDLVDQQLESADSFERDGLEWLAVAVGGEDGGGGESAGVDANDAGEIAREAAG 369

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + ++ ++++ G +       +  V ED  +  +A  +        GGGG GG   +AQ+G
Sbjct: 370 E-RADVVVIAGAA--GSPYAVASVAEDAQETMSAGSVIDALTAEFGGGG-GGSDALAQAG 425

Query: 879 G----PNGNKADQAIAGVA 893
           G    P+ ++    +  V 
Sbjct: 426 GFAELPDEDEIRDVLESVE 444


>gi|229086195|ref|ZP_04218404.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-44]
 gi|228697114|gb|EEL49890.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-44]
          Length = 240

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 100/250 (40%), Gaps = 17/250 (6%)

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN E+A              + +RVV +E  D        CGGTH   TGE+  ++I+  
Sbjct: 1   MNLEEAKQLPLRKE--PTITEDIRVVFIENYDYN-----GCGGTHPKYTGEVGPIHIIGW 53

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
              + G+ R+  + G RA   +      +K ++  L  S+  +  +V ++    ++ +  
Sbjct: 54  ERNKGGV-RLTFVAGWRALKLMGHYQHIIKDVSKQLNSSENAIPNKVTQLLTSQKENEKE 112

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                 +L   + +       +      +S + +    +E+  +   + ++ ++ +I   
Sbjct: 113 LQIMNEKLLFVEANELLQQSKQTDAGTLISKVFTNRSMQEIAKLSAIITEQNEN-VITYF 171

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            I  E K   ++   + +    N   + + +   +  G GGG P  A+ GG      ++ 
Sbjct: 172 IIENEDKLQCILACGKTVQANMN--TILKNALPAIE-GKGGGNPKSARGGGKAVITGEEF 228

Query: 889 IAGVASFLKK 898
           +A +   LK+
Sbjct: 229 LALLVHSLKE 238


>gi|325662129|ref|ZP_08150747.1| hypothetical protein HMPREF0490_01485 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471578|gb|EGC74798.1| hypothetical protein HMPREF0490_01485 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 326

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 134/350 (38%), Gaps = 28/350 (8%)

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
              +   +   S   AIVQ+        SG   E++ D+T F+ E GGQ  DTG   G  
Sbjct: 2   TEKLFYQDSHRSTFTAIVQEVRP-----SGNGYEIILDRTAFFPEGGGQSSDTGSLGGVS 56

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +           + I         G L     +   ID+  R      H+  H++   + 
Sbjct: 57  VS--------DVQEIDGKIIHYTDGPLVEGAEVEGCIDWTERFSKMQQHTGEHIVSGLIH 108

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            I G H    G  +  D +  D      +   +L  IE   N+ +A+NLPV       E+
Sbjct: 109 KIYGYH--NVGFHLGTDSVTLDFN--GVVPKEKLHEIEQLANEAVAKNLPVQVLYPTDEE 164

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                  + +      +VR+V ++  D        C   HV  TGEI L+ +V   + + 
Sbjct: 165 LSKISYRSKIE--IEGQVRIVVIDGYD-----VCACCAPHVKQTGEIGLIKLVGMQNYKG 217

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ RI  + G RA      +++  + +A  L   +      VE + EE    +   A+ +
Sbjct: 218 GV-RISMLCGFRALEDYYQKEKNNREIAVMLSAKEYETAVEVERLQEELAMKKAKIAELE 276

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA-LQKKIQSGIIML 827
            +   + +    ++    +  +  E D    + +++  L+K+ + G  + 
Sbjct: 277 QKFLEQKVETLDVSGE--IVCLFEETDPVMTRELVNLLLKKRSKDGSCLF 324


>gi|321475975|gb|EFX86936.1| hypothetical protein DAPPUDRAFT_312382 [Daphnia pulex]
          Length = 403

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 137/385 (35%), Gaps = 27/385 (7%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
              Q  EV+ + T F+ E GGQ  D G   G  +       +     +        +  L
Sbjct: 35  EKVQVFEVLLEDTVFFPEGGGQPDDRGFLNGIPVLQVKRRGKDAIHFL--------QDSL 86

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                    ID++ R      HS  H++        G   +      +   +  D  +  
Sbjct: 87  DVGTLATGVIDWERRWDHMQQHSGQHVITAIADASFGFKTTSWWLGESVSHIELDTVN-- 144

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +T A+LK+IE  VN+ I + + V  ++   +       +  L   +   VRVV++   D
Sbjct: 145 -VTDAQLKTIESQVNEKIREAVSVEVKVYEGDAIPDQVRSRGLPDDHVGPVRVVTILGVD 203

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                  +C GTHVS+   +  + ++     +     +  I+G R   ++    ++ + L
Sbjct: 204 SN-----MCCGTHVSNLSHLQFIKLLYTEKGKKNKTNLFFISGNRVLDYINRSLDRERQL 258

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
              LK    + V    ++    +  Q        +L V      K     F      + D
Sbjct: 259 TKILKNGPEDHVDLANKLQALVKLSQKTLQTLMKELAVVQAEKIKSEKPKFAIVHRKDGD 318

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +    +++  L  +    I +L+ + ++    + ++  ED++       L       L  
Sbjct: 319 ADYASALISELASE---AITLLITVGEDNNGQMTLIGQEDVVSS-----LGPKICSCLA- 369

Query: 866 GGGGGRPHMAQSGGP--NGNKADQA 888
           G G G+ +  Q+     N +   +A
Sbjct: 370 GKGAGKGNKFQAKVTQLNPSARQEA 394


>gi|313223171|emb|CBY43396.1| unnamed protein product [Oikopleura dioica]
          Length = 215

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 83/219 (37%), Gaps = 20/219 (9%)

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S   CGGTH+        L I +E +I  GIRR+ A+TG  A           K  
Sbjct: 3   ADKTSVEFCGGTHLRDISHARKLIITAEEAISKGIRRVIAVTGAEAEKADRQAQRLAK-- 60

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQL-----IHAKRKLQLNVEDLSCHK-IADVNFMSH 799
           A+ LK         V E+  E ++           +R + L  +  + +K +  + +  +
Sbjct: 61  ANQLKEKD------VNELKAEVKEAIKAKNTAEANQRAISLGWKSFNMNKRLKSMEYALN 114

Query: 800 IISEV--DSKELKSVMDALQKKIQSGIIMLVGIS-KEKKASVLIVVTEDLLDRFNAVDLA 856
            +  V  ++K L  ++    KK     ++L       KK   L    +       A +  
Sbjct: 115 KLKSVLINNKVLNEILKLYAKKSPKSHVLLFSADHTAKKVLCLAQTPKGST--LKANEWV 172

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
              + ++  G GGG+   AQ+ G N +    A+A    F
Sbjct: 173 SSISPLI-DGRGGGKDVQAQASGKNVSGLKGALAKAKEF 210


>gi|188995191|ref|YP_001929443.1| hypothetical protein PGN_1327 [Porphyromonas gingivalis ATCC 33277]
 gi|188594871|dbj|BAG33846.1| hypothetical protein PGN_1327 [Porphyromonas gingivalis ATCC 33277]
          Length = 336

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 126/359 (35%), Gaps = 58/359 (16%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTN-----SGMVPFK-NIFTGQE 54
           M     +   F +F ++ G+     S+LI     +  F N     +G   +   I   +E
Sbjct: 1   MITQQEVIEKFFQFTRERGYAKKERSNLI-----SPYFNNEFNLSAG-HQYVIPILQNEE 54

Query: 55  KPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM--LGNFSFGGYFKE-------R 105
           K     +   + C+R      DL+ +G +N H   FEM  +G F +  + KE        
Sbjct: 55  KEELIKIAINEICIR----RIDLEKLGASNHHLLMFEMGVMGVFGYIDHIKEQLLSILRD 110

Query: 106 AIQLAWDLLTKEFDLDQRRLYITV----------YDEDEEAFKLWKKISGLSADKIIRIT 155
            I      L +    D  ++Y +V          Y  D  +++      G+    I++  
Sbjct: 111 VID-----LIELLGFDMNQIYFSVSEGASVLHKKYPADTLSYECLL-HHGIRPLNIVKTK 164

Query: 156 TNDNFW-SMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
              NF  S     P G   EIF+ +GE     +   +     + E               
Sbjct: 165 GRQNFIFSNGVGRPAGNSIEIFYKRGEDFT-EIASINIYKYLFSE--------------G 209

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVNHR 273
           +   +  M+I  G G +R+  +L      +D   F    +  + +   +     N     
Sbjct: 210 KLHPMTNMAIGGGFGFDRITYLLNGYNRVFDTPPFSLFSEQIKDLFRNEMEYRLNQDKIN 269

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
            I++ +++  F+  DG  P N   G +++  + +       L   E  ++ +  +   E
Sbjct: 270 RILELIKTLVFIELDGQKPDNSPHGKIMKGFIDKLKSEINYLELQENDVVEMGVSAVKE 328


>gi|297273145|ref|XP_001112499.2| PREDICTED: alanyl-tRNA editing protein Aarsd1-like isoform 2
           [Macaca mulatta]
          Length = 585

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 153/437 (35%), Gaps = 31/437 (7%)

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
              + +   R           T  VS     +  +G   ++ +SG    VV + T  + E
Sbjct: 169 ELLQKVSTKRPPPAMDDLDFTTTVVSCRPAELQTEGSNGKKVLSG--FHVVLEDTLLFPE 226

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ  D G      +       ++             +  L     +++ +D++ R   
Sbjct: 227 GGGQPDDHGTINDISVLRVTRRGEQAD--------HFTQTPLDPGSQVLVRVDWERRFDH 278

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS  HL+      +     +             ++      T  ++ +IE +VN+ I
Sbjct: 279 MQQHSGQHLITAVADHLFKLKTTSWEL--GRFRSAIELDTPSMTTE-QVAAIEQSVNEKI 335

Query: 644 AQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
              LPV  R ++ +D          L   +   VRVVS++  D       +C GTHVS+ 
Sbjct: 336 RDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPVRVVSIKGVDSN-----MCCGTHVSNL 390

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            ++ ++ I+     +     +  + G R    +       K+L + LK    + V  V++
Sbjct: 391 SDLQVIKILGTEKGKKNKTNLIFLAGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKK 450

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +    + LQ  +      L V    S     D   +  ++   +       M+ +  +I 
Sbjct: 451 LQNSTKILQKNNLNLLRDLAVHIAHSLRNSPDWGGVV-VLHRKEGDS--EFMNIIANEIG 507

Query: 822 SGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           S   +L     ++K +   L+      ++      L    A+VL G G G +    Q   
Sbjct: 508 SEETLLFLTVGDEKGAGLFLLAGPPASVE-----TLGPRVAEVLEGKGAGKKGRF-QGKA 561

Query: 880 PNGNKADQAIAGVASFL 896
              ++  +  A +  ++
Sbjct: 562 TKMSRRTEVQALLQDYI 578


>gi|308153370|gb|ADO14994.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae]
          Length = 101

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             +   D+K L+  MD L++++   +I+L G S   K +++  V      +  A +L   
Sbjct: 1   VRLEGFDAKALRDAMDRLKQQLGDSVIVLAGAS-GGKVALVSGVNGSPTGKVKAGELLSN 59

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            A  + GG GGGRP +AQ GG +G     A+ GV  ++K+
Sbjct: 60  IASQI-GGKGGGRPDLAQGGGEDGPALATALDGVPLWVKQ 98


>gi|283798149|ref|ZP_06347302.1| putative alanyl-tRNA synthetase domain-containing protein 1
           [Clostridium sp. M62/1]
 gi|291074129|gb|EFE11493.1| putative alanyl-tRNA synthetase domain-containing protein 1
           [Clostridium sp. M62/1]
          Length = 387

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 150/381 (39%), Gaps = 31/381 (8%)

Query: 500 EIVEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
             V   VSG+K  EV  D+T FY E GGQ  DTG         ++ DV +K   +     
Sbjct: 16  ARVTACVSGKKGFEVELDRTCFYPEGGGQPADTGV----LGTARVLDVHEKDGTVIH--- 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 L     +   ID++ R      HS  H++   + ++ G      G  +  + + 
Sbjct: 69  -YTDRELSVGEEVTGRIDWEARFSNMQQHSGEHIVSGLIHSVYGYD--NVGFHMGREEMT 125

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+    P++  EL  IE+  N  I  N+P+     + E+       +    + + +VR+
Sbjct: 126 IDLN--GPMSWEELMEIEEKANRAIWANIPLKITYPSEEELEKLDYRSK--KELSGQVRI 181

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V V   D     +  C GTHV+ TGEI ++  +S  + + G+ RI  + GQ+A      +
Sbjct: 182 VEVPGVD-----TCACCGTHVAYTGEIGVIKFLSLMNYKGGV-RISMLCGQKALKACDRK 235

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIADVNFM 797
            E++ +++  L      +V  V+   +E  + +        QL     + + +   +  +
Sbjct: 236 TEQVSAVSVLLSAKPEEIVEAVKRQRDELSEEKARTVALTRQLMELKTASYPESDGILLV 295

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
                +    E++   + L +  +  +  + G      +  L     D+        L R
Sbjct: 296 FEK--DYTPVEVRQFCNLLMEAKRGQVTAVFGGQSGSFSYTLASPVHDM------RTLGR 347

Query: 858 LSAKVLGGGGGGGRPHMAQSG 878
              + L  G GGG   M Q  
Sbjct: 348 ELNQSLN-GRGGGSERMVQGS 367


>gi|109115545|ref|XP_001112534.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like isoform 3
           [Macaca mulatta]
          Length = 524

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 153/437 (35%), Gaps = 31/437 (7%)

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
              + +   R           T  VS     +  +G   ++ +SG    VV + T  + E
Sbjct: 108 ELLQKVSTKRPPPAMDDLDFTTTVVSCRPAELQTEGSNGKKVLSG--FHVVLEDTLLFPE 165

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ  D G      +       ++             +  L     +++ +D++ R   
Sbjct: 166 GGGQPDDHGTINDISVLRVTRRGEQAD--------HFTQTPLDPGSQVLVRVDWERRFDH 217

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS  HL+      +     +             ++      T  ++ +IE +VN+ I
Sbjct: 218 MQQHSGQHLITAVADHLFKLKTTSWEL--GRFRSAIELDTPSMTTE-QVAAIEQSVNEKI 274

Query: 644 AQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
              LPV  R ++ +D          L   +   VRVVS++  D       +C GTHVS+ 
Sbjct: 275 RDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPVRVVSIKGVDSN-----MCCGTHVSNL 329

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            ++ ++ I+     +     +  + G R    +       K+L + LK    + V  V++
Sbjct: 330 SDLQVIKILGTEKGKKNKTNLIFLAGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKK 389

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +    + LQ  +      L V    S     D   +  ++   +       M+ +  +I 
Sbjct: 390 LQNSTKILQKNNLNLLRDLAVHIAHSLRNSPDWGGVV-VLHRKEGDS--EFMNIIANEIG 446

Query: 822 SGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           S   +L     ++K +   L+      ++      L    A+VL G G G +    Q   
Sbjct: 447 SEETLLFLTVGDEKGAGLFLLAGPPASVE-----TLGPRVAEVLEGKGAGKKGRF-QGKA 500

Query: 880 PNGNKADQAIAGVASFL 896
              ++  +  A +  ++
Sbjct: 501 TKMSRRTEVQALLQDYI 517


>gi|218506791|ref|ZP_03504669.1| alanyl-tRNA synthetase [Rhizobium etli Brasil 5]
          Length = 119

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/101 (46%), Positives = 71/101 (70%)

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              +  ++A V ++   ++ VD K+LK + D  +  I SGI+ L+G+S++ KAS ++ VT
Sbjct: 5   SADAVREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLIGVSEDGKASAVVAVT 64

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 65  PDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 105


>gi|149183677|ref|ZP_01862091.1| alanyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148848625|gb|EDL62861.1| alanyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 73

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 1  MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
          M N+  + IR  FLEFF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1  MKNLTGAEIRRMFLEFFKEKGHGVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59 QAVTTVQKCVRA 70
            +   QK +R 
Sbjct: 61 PRIVNAQKSIRT 72


>gi|295091706|emb|CBK77813.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Clostridium cf. saccharolyticum
           K10]
          Length = 387

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 149/381 (39%), Gaps = 31/381 (8%)

Query: 500 EIVEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
             V   VSG+K  EV  D+T FY E GGQ  DTG         ++ DV +K   +     
Sbjct: 16  ARVTACVSGKKGFEVELDRTCFYPEGGGQPADTGV----LGTARVLDVHEKDGTVIH--- 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 L     +   ID++ R      HS  H++   + ++ G      G  +  +   
Sbjct: 69  -YTDRELSVGEEVTGRIDWEARFSNMQQHSGEHIVSGLIHSVYGYD--NVGFHMGREETT 125

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+    P++  EL  IE+  N  +  N+P+     + E+       +    + + +VR+
Sbjct: 126 IDLN--GPMSWEELMEIEEKANRAVWANIPLKITYPSEEELEKLDYRSK--KELSGQVRI 181

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V V   D     +  C GTHV+ TGEI ++  +S  + + G+ RI  + GQ+A      +
Sbjct: 182 VEVPGVD-----TCACCGTHVAYTGEIGVIKFLSLMNYKGGV-RISMLCGQKALKACDRK 235

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIADVNFM 797
            E++ +++  L      +V  V+   +E  + +        QL     + + +   +  +
Sbjct: 236 TEQVSAVSVLLSAKPEEIVEAVKRQRDELSEEKARTVALTRQLMELKTASYPESDGILLV 295

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
                +    E++   + L +  +  +  + G      +  L     D+        L R
Sbjct: 296 FEK--DYTPVEVRQFCNLLMEAKRGQVTAVFGGQSGSFSYTLASPVHDM------RTLGR 347

Query: 858 LSAKVLGGGGGGGRPHMAQSG 878
              + L  G GGG   M Q  
Sbjct: 348 ELNQSLN-GRGGGSERMVQGS 367


>gi|195999396|ref|XP_002109566.1| hypothetical protein TRIADDRAFT_20746 [Trichoplax adhaerens]
 gi|190587690|gb|EDV27732.1| hypothetical protein TRIADDRAFT_20746 [Trichoplax adhaerens]
          Length = 398

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 119/350 (34%), Gaps = 24/350 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           +       +VV + T  +   GGQ  D G        + + DV++               
Sbjct: 25  KLEGKNGFDVVLEDTILFPAGGGQPDDRGTI----NEVPVHDVRRDGSKAVH----FTEK 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +  + +D+  R      H+  HL+        G              +      
Sbjct: 77  SLEVDANAHIVVDWNRRFDHMQQHTGQHLITAVFENRYGYKTLSWNLGKVKSSIELSC-- 134

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVE 682
            K +T  E+   E  +N  I  N PV   +  ++D       +  +   +   VRVV +E
Sbjct: 135 -KSMTQEEIDCAELEINKAIKANTPVSVHLYEKDDPGLEKIRSRGIPDDFAGPVRVVEIE 193

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
             D        C GTH+++   + ++ ++     R G  RI  + G R  + L       
Sbjct: 194 NIDAN-----TCCGTHLANLSHLQMIKLLHTEPTR-GCTRIHFLAGNRVMNTLCSMINTE 247

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII- 801
           + L   L     + V +V+++ +  +  Q        ++    L   K  + + +   + 
Sbjct: 248 RKLTQILSCGPEDHVDQVQKLQKTAKSSQKAARNYLREIAT--LEAEKFNNTSDLVLCVH 305

Query: 802 -SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
             + D   L  +   ++ K  + II L   S       L+     L+D+ 
Sbjct: 306 REDGDMDFLNVINSKIRNK--NAIIFLSVGSNSTGGQFLLTGPPSLIDKI 353


>gi|189202146|ref|XP_001937409.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984508|gb|EDU49996.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 584

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 68/402 (16%), Positives = 139/402 (34%), Gaps = 29/402 (7%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF-VHHAIVERG 563
           A   +   +    +  + E GGQ  D G            ++  ++     +        
Sbjct: 201 ATGSKTYLIELADSVLFPEGGGQHTDHGVLTTLKHDESKEEIPIRSIQRHGLRCIHFSPT 260

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L   M +  T+D+  R  L   H+  HLL   +    G  +   G  +   G    V  
Sbjct: 261 PLPPGMPVRQTVDFARRWDLMQQHTGQHLLSAIM---DGMDLPTLGWSMGQPGEMNYVEL 317

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +  T  E++ I+ + N  I +++P+        +   S +      K    VR + +  
Sbjct: 318 PRKPTDDEIQKIQKDCNAKIGESMPITVE---TPEGKGSDSLPDDYDKEKGVVRFIKIGD 374

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            D        C GTH+ ++  I ++ +    S+R    R+    G RA          L+
Sbjct: 375 MDYN-----ACCGTHLQNSAHISVILLHHTQSVRGTNCRLFFTAGDRAIRMATEAINGLR 429

Query: 744 SLASFLKVS--QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI----ADVNFM 797
           ++A  L  S    +V   V+ + ++  + +    K   ++   +    K      +V F 
Sbjct: 430 TIAVSLSSSSAPTDVAAGVQRMSDQVSESRKKEKKLLAEIASFEGERIKTQLQSQEVAFS 489

Query: 798 SHIISEVDSKELKSVMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
                 +D   +  V   ++  ++   G+++L     +   SVL+    +L+++  A   
Sbjct: 490 HRTTDGLD--FINMVFFEVKDTVKERDGVVVLCSGEVKTSGSVLVFGMPELVEKMTAK-- 545

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +          GGG+    Q       K +  I  +   + 
Sbjct: 546 VKEVVSTA---KGGGKGEKWQGKVTEWQKGE--IEALRDVVN 582


>gi|154249461|ref|YP_001410286.1| threonyl/alanyl tRNA synthetase SAD [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153397|gb|ABS60629.1| Threonyl/alanyl tRNA synthetase SAD [Fervidobacterium nodosum
           Rt17-B1]
          Length = 373

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 135/370 (36%), Gaps = 36/370 (9%)

Query: 506 VSGQKVEVVFDQTPFYA-EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
               K       +PFY    GGQLGD G   G     ++  V++  E I           
Sbjct: 19  NKDGKYYAYAKISPFYPDWKGGQLGDRGFING----AKVLSVKETEEWIIHELDKPIEL- 73

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                   + ID   R+ ++  H+  H+L  A   +    +   G  +  +    D+   
Sbjct: 74  ----GIYEVQIDENRRKDIAQQHTGQHILSAAFIHVAE--IETVGFHMGEEYSTIDLDIP 127

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
             I    L  +E+  N II  N+ +   I +   A        L  K  + VR++ +   
Sbjct: 128 -YIEPDVLNEVEELSNQIIQSNIQIEEIITDVNGANTYPLRKKLSDKIKEEVRLIKIGDF 186

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D      + CGG H   TGE+ L+ I+    ++  + R+ A++G RA  +    +  LK 
Sbjct: 187 D-----ISACGGFHTDYTGEVGLIKIIDTEKVKGNLTRVYAVSGMRALKYFQKYNSVLKD 241

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           L+  L  S   +  R +++  + R+  L  +K   +      +  +   + ++       
Sbjct: 242 LSKLLTSSIDELNLRTQKLLNQVREQALTLSKLSEEYAKLLATNLQKEGLIYLEGYYEV- 300

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
               L  ++D     + + I +       +K  +          + N  D+ +   +   
Sbjct: 301 -GNFLWKILD-----LSNAIFVYF---DGEKYII-------ASKKHNVKDVIKALVEN-Y 343

Query: 865 GGGGGGRPHM 874
           GG GGG+   
Sbjct: 344 GGKGGGKEDF 353


>gi|146418128|ref|XP_001485030.1| hypothetical protein PGUG_02759 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 449

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 137/407 (33%), Gaps = 43/407 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V    T  + E GGQ  DTG  +             +     +H        +    +
Sbjct: 62  YAVELKDTILFPEGGGQPYDTGSIVLPDSTKVSVSKVVREGVTALHITPT---PIEPGTN 118

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L I++  R      H+  HLL      +    +   G  +       ++     ++  
Sbjct: 119 VSLEINWDRRLDHMQQHTGQHLLSAV---LDSYKIETLGWSLGEKINYVEL--PMKVSDE 173

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGG 687
            ++ +   VND I + +P    ++  +        + +   Y+     VRVV +   D  
Sbjct: 174 IVEEVSRKVNDYIFKAIP--IEVVTPDQHGGELDISHIPEDYDLSKGVVRVVKIGDLDAN 231

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 C GTH++ST +I  + ++ +++IR G  R+    G R           LK+  +
Sbjct: 232 -----PCCGTHLTSTSQITAISLLHQTNIRGGNSRLHFCCGHRVAKLASELLAILKNAGA 286

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEV 804
            L      +  ++E +   Y+K     +    ++   +                    + 
Sbjct: 287 LLSCQSDEITSKIELLNFNYKKANSTVSNLLKEIAASEAKRIYDLFKEGSQVEYAFREDE 346

Query: 805 DS-------KELKSVMDALQKK-----IQSGIIMLVGISKEK-KASVLIVVTEDLLDRFN 851
           +        K+L + ++  + +       + ++ + G  KE  K  V I+          
Sbjct: 347 NPEYVPLLQKQLLTFINQDKSRGIDLEKTNTVVFINGERKENTKGMVKIMGP-------Q 399

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           A  +       L    GGG+  M Q       K +  +A V  +L+K
Sbjct: 400 AQTILAELKSRLSNLAGGGKGAMFQGKITGLGKIE--LASVIEYLEK 444


>gi|190346550|gb|EDK38661.2| hypothetical protein PGUG_02759 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 449

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/407 (16%), Positives = 141/407 (34%), Gaps = 43/407 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V    T  + E GGQ  DTG  +             +     +H        +    +
Sbjct: 62  YAVELKDTILFPEGGGQPYDTGSIVLPDSTKVSVSKVVREGVTALHITPT---PIEPGTN 118

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L I++  R      H+  HLL      +    +   G  +       ++     ++  
Sbjct: 119 VSLEINWDRRLDHMQQHTGQHLLSAV---LDSYKIETLGWSLGEKINYVEL--PMKVSDE 173

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGG 687
            ++ +   VND I + +P    ++  +        + +   Y+     VRVV +   D  
Sbjct: 174 IVEEVSRKVNDYIFKAIP--IEVVTPDQHGGELDISHIPEDYDLSKGVVRVVKIGDLDAN 231

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 C GTH++ST +I  + ++ +++IR G  R+    G R           LK+  +
Sbjct: 232 -----PCCGTHLTSTSQITAISLLHQTNIRGGNSRLHFCCGHRVAKLASESSAILKNAGA 286

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEV 804
            L      +  ++E +   Y+K     +    ++   +                    + 
Sbjct: 287 LLSCQSDEITSKIELLNFNYKKANSTVSNLLKEIAASEAKRIYDSFKEGSQVEYAFREDE 346

Query: 805 DS-------KELKSVMDALQKK-----IQSGIIMLVGISKEK-KASVLIVVTEDLLDRFN 851
           +        K+L + ++  + +       + ++ + G  KE  K  V I+  +      +
Sbjct: 347 NPEYVPLLQKQLLTFINQDKSRGIDLEKTNTVVFINGERKENTKGMVKIMGPQAQT--IS 404

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           A +L    + + GGG G     M Q       K +  +A V  +L+K
Sbjct: 405 A-ELKSRLSNLAGGGKG----AMFQGKITGLGKIE--LASVIEYLEK 444


>gi|152002514|dbj|BAF73538.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W]
          Length = 321

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 134/332 (40%), Gaps = 44/332 (13%)

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           +   LGSH+ + GS +    LR+D  H + IT   L  IE  VN +I +++PV    ++ 
Sbjct: 1   MQKQLGSHLKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKSVPVKIEQLSI 60

Query: 657 EDAIASGAA---ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            DA    A         KY D+VR+VS++       S  LCGGTH ++T ++    I+S 
Sbjct: 61  PDAQKKYATLLEKNQKAKYKDKVRIVSIDTF-----SVDLCGGTHATNTKDLEHFTILSC 115

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKV------------------ 751
            SI +GI RIEA+     +  L  +       L  L    K                   
Sbjct: 116 ESISSGIYRIEAVCNNNCQESLNAKLVPYQNDLHQLTQKAKSLQTQNLIFDVKNFPPITQ 175

Query: 752 SQGNVVGRVEEIWEEYRKL---QLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           S  +++   + I  + + L   +       ++K+     +    +I     M  I  E  
Sbjct: 176 SYQDILNYQKHIKAQQQALVLFEKKVLEYHQKKMVQAESNFLPPQITK-KMMLTIEEEKP 234

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            + LK  ++ +  K    ++ L  +  EK   +            +A +L + +  ++  
Sbjct: 235 LEVLKFFINHIFDKYHLEVLFLSYVQPEKIVFLC------KSKTLHAGNLIKEAVSLVC- 287

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G GGG   +AQ G       +Q +  V + L+
Sbjct: 288 GSGGGNASLAQGGTKKTKNLEQVLNFVKTKLE 319


>gi|330974931|gb|EGH74997.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 80

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/80 (56%), Positives = 57/80 (71%), Gaps = 8/80 (10%)

Query: 134 EEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEIFFD G  I GG
Sbjct: 1   DEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEIFFDHGPEIWGG 60

Query: 187 LPGSS-EEGERYIEIWNLVF 205
            PGS  E+G+RYIEIWN VF
Sbjct: 61  PPGSPEEDGDRYIEIWNNVF 80


>gi|125987702|sp|Q9BTE6|AASD1_HUMAN RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein 1
          Length = 412

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 144/390 (36%), Gaps = 29/390 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VV + T  + E GGQ  D G      +       ++             +  L     
Sbjct: 41  FQVVLEDTVLFPEGGGQPDDRGTINDISVLRVTRRGEQAD--------HFTQTPLDPGSQ 92

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +++ +D++ R      HS  HL+      +     +             ++     +T+ 
Sbjct: 93  VLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWEL--GRFRSAIELDTPS-MTAE 149

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN+ I   LPV  R ++ +D      +   L   +   +RVV++E  D    
Sbjct: 150 QVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIEGVDSN-- 207

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  ++G R    +       K+L + L
Sbjct: 208 ---MCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALL 264

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKE 808
           K    + V  V+++    + LQ  +      L V    S     D   +  I+   +   
Sbjct: 265 KCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSPDWGGVV-ILHRKEGDS 323

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
               M+ +  +I S   +L     ++K     L+      ++      L    A+VL G 
Sbjct: 324 --EFMNIIANEIGSEETLLFLTVGDEKGGGLFLLAGPPASVE-----TLGPRVAEVLEGK 376

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G G +    Q      ++  +A A +  ++
Sbjct: 377 GAGKKGRF-QGKATKMSRRMEAQALLQDYI 405


>gi|149239556|ref|XP_001525654.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451147|gb|EDK45403.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 439

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 148/408 (36%), Gaps = 41/408 (10%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           K  V F+ T  + E GGQ  D G         +            +    +    +    
Sbjct: 52  KYGVEFEDTILFPEGGGQPFDKGTITILDGADKEIIEVNSILRDKLKAVHIVEKPIEVGT 111

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + L +D+  R  +   H+  HLL          ++      +  +    ++     +  
Sbjct: 112 PVQLDVDWDRRLDIMQQHTGQHLLSAVF---DTYNMETLSWSMGDEINYIEL--PSKVED 166

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             +K ++D VN +I +  P    ++  +        + L   Y+    ++ +     G  
Sbjct: 167 DIVKEVQDKVNQLIFEAHP--ITVVTPDAEGHEIDTSHLPDDYDQTQGIIRIVKI--GDL 222

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF- 748
            S  C GTH+SST +I  L +++++SIR G  R+    GQR         + LK+++   
Sbjct: 223 DSNPCCGTHLSSTSQIQSLVLLNQTSIRGGHSRLYFTCGQRVSKLSSEYFDILKTVSGLQ 282

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-----ADVNFMSHIISE 803
           L     +VV +V+++   YRK     +    +L   +L   ++      +   +     +
Sbjct: 283 LSCQISDVVNKVDQLNTNYRKANSTISALSKELA--NLKAAEVFKNYRENAEIVYVYRDD 340

Query: 804 VDS-------KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF------ 850
            +        KEL ++++A ++          G+    K ++++   +            
Sbjct: 341 TNPEYLNLVQKELLTMINADKE---------CGVDLSNKQTLVLFNGQTATGGMVKILGP 391

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK--ADQAIAGVASFL 896
            A D++    + +    GGG+    Q    N  K   D  I  + S +
Sbjct: 392 KAADISAELKQRITSLKGGGKGSSFQGKITNYEKGEIDSVIRYLDSLV 439


>gi|110668771|ref|YP_658582.1| alanine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
 gi|109626518|emb|CAJ52980.1| alanine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 412

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 82/394 (20%), Positives = 144/394 (36%), Gaps = 25/394 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E            V  D T FYAE+GGQ  D G      +         ++    V H +
Sbjct: 13  EFTATVTGIDGQVVTLDHTYFYAESGGQPPDIGTLSDISVT------DVQSADGVVKHTL 66

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +   ID + R      H+A+H+++ A   IL  ++   G  I  + +R 
Sbjct: 67  ASTPAFDIGDDITGIIDDEFRNYCMRAHTASHIIYGAGRQILD-NLGYGGFGINSEKIRV 125

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D T + PI    L  +E   N  + ++  V    +   +A A    A         +   
Sbjct: 126 DFTTTTPIDDETLIKLEQLTNRTVWESRDVTWETVPTAEAAAREDVAFNTKTEEGVMSDA 185

Query: 680 -SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
            SV   D      A CGGTHV +T  +  + ++  S+   G+ RIE   G         Q
Sbjct: 186 DSVRLVDIDGWDVAACGGTHVGNTSAVGPVTVLERSNPGEGMTRIEFAVGPTGIDRRATQ 245

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL----------SC 788
              L+  A  L+ +  N+  R   + +E  +L+      + ++    +          + 
Sbjct: 246 HRALRETAIALETNIINLSDRATALRDERDELESRVNDLEAKILDSAIVDFESTQTDTAV 305

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI---IMLVGISKEKKASVLIVVTED 845
            +I  +  +S  +++   +  K  + +       G+    ++  +   ++  V+I   + 
Sbjct: 306 WRIGSITEISVGVNDA-GEAAKRALKSPSNIDHEGVPHGSVIAIVGTGERPFVVIAADDA 364

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
                NA  +        GGGG GG P  AQ GG
Sbjct: 365 --SEVNAGTVIDELTDTYGGGG-GGGPSFAQGGG 395


>gi|74200281|dbj|BAE22937.1| unnamed protein product [Mus musculus]
          Length = 412

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 138/389 (35%), Gaps = 27/389 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV + T  + E GGQ  D G      +        +                L     
Sbjct: 41  FHVVLEDTLLFPEGGGQPDDRGTINDISVLRVTRRGAQA--------GHFTESPLSPGSQ 92

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +             ++     +T+ 
Sbjct: 93  VQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSWEL--GRLRSVIELDSPS-VTAE 149

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN  I   LPV  R ++ +D          L   +   +RVV++E  D    
Sbjct: 150 QVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIEGVDSN-- 207

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  + G R    +       K+L S L
Sbjct: 208 ---MCCGTHVSNLSDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHGSEKALTSLL 264

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K    + V  V+++    + LQ  +      L V      + +        +   +    
Sbjct: 265 KCGVEDHVEAVKKLQNATKLLQKNNLNHLRDLAVHTAHSLRSSPAWGGVVTLHRKEGDS- 323

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
              M+ +  +I S   +L     ++K +   L+    + ++      L    A+VL G G
Sbjct: 324 -EFMNIIANEIGSEETLLFLTVGDEKGAGLFLLAGPAEAVE-----TLGPRVAEVLEGKG 377

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G +    Q      ++  +A A +  ++
Sbjct: 378 AGKKGRF-QGKATKMSRRAEAQALLQDYV 405


>gi|148230330|ref|NP_001080266.1| alanyl-tRNA synthetase domain containing 1 [Xenopus laevis]
 gi|82176835|sp|Q7ZYJ9|AASDB_XENLA RecName: Full=Alanyl-tRNA editing protein Aarsd1-B; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein
           1-B
 gi|27696840|gb|AAH43754.1| Aarsd1-a protein [Xenopus laevis]
          Length = 412

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 146/395 (36%), Gaps = 38/395 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+   T  + E GGQ  D G        + +  V ++        A      L     ++
Sbjct: 42  VLLKDTVLFPEGGGQPDDRG----FIGEVPVLRVIRQGPDAVHFVAS----PLDPATEVL 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + ID+  R      HS  HL+     ++ G   +          +  D      +T+ ++
Sbjct: 94  VKIDWNRRFDHMQQHSGQHLVTAIADSLYGFKTTSWDLGRQRSVIELDTPL---VTAEQV 150

Query: 633 KSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++IE   N  I +++PV  R I   +       +  L   +   VR++ +E  D      
Sbjct: 151 EAIEKVANQKIREHVPVHVRLITVDDPEFDMVRSRGLPDDHAGPVRIIDIEGVDAN---- 206

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            +C GTHV +  ++ ++ I+     +     +  ++G+R   ++       K+L S LK 
Sbjct: 207 -MCCGTHVRNLSDLQMIKILGTEKGKKNKTNLIFLSGERVLKYVSRSYNTEKTLTSLLKN 265

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKEL 809
                +  V+++ +  + LQ  +      L V        K     F S    E D+   
Sbjct: 266 GPEEHIEAVDKLQKSVKALQKNNLTLLRDLAVLTAENFKSKADRGKFFSLHRKEGDN--- 322

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
              M+ +  +I +   +L     ++K S   L+     ++++F          ++L G G
Sbjct: 323 -EFMNIIANEIGTEDTLLFLTIGDEKTSGLFLLAGPPGIVEKF-----GPRVCEILDGKG 376

Query: 868 GG--GRPHMAQSGGPNGNKADQA---IAGVASFLK 897
            G  GR    Q      ++  +    +  V S ++
Sbjct: 377 AGKCGR---FQGKANKMSQRAEVEVLLQKVISSVE 408


>gi|68479127|ref|XP_716369.1| hypothetical protein CaO19.12703 [Candida albicans SC5314]
 gi|68479258|ref|XP_716308.1| hypothetical protein CaO19.5239 [Candida albicans SC5314]
 gi|46437974|gb|EAK97312.1| hypothetical protein CaO19.5239 [Candida albicans SC5314]
 gi|46438036|gb|EAK97373.1| hypothetical protein CaO19.12703 [Candida albicans SC5314]
          Length = 471

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 70/420 (16%), Positives = 148/420 (35%), Gaps = 44/420 (10%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  V  + T  + E GGQ  D G         +I +V+       +    +   ++    
Sbjct: 63  EFGVELEDTILFPEGGGQPYDKGTITLLPDNTKIIEVKSVLRDK-LKAIHLVDELIEPGT 121

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + L +D+  R  +   H+  HLL     T      + + S          +   + I +
Sbjct: 122 QVRLNVDWGRRLDIMQQHTGQHLLSAVFDTYKLE--TLSWSMGETKDDINYIELPRKIDN 179

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG--- 686
             +  +++ VN +I  ++P+     ++                +  V +  +  +     
Sbjct: 180 DLVVEVQNKVNQLIVDSIPITVVTSDQHGHGHGQEHEHEHEHEHADVDISHIPDDYDLSQ 239

Query: 687 ---------GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
                    G   +  C GTH++ST +I  + ++ +S IR G  R+  I G R  +HL  
Sbjct: 240 GGIIRIVKIGELDANPCCGTHLTSTAQIQSIALLHQSPIRGGHSRLYFICGGRVANHLRK 299

Query: 738 QDEKLKSLA-SFLKVSQGNVVGRVEEIWEEYRK-------LQLIHAKRKLQLNVEDLSCH 789
           + E LK+++ + L  S   V  ++E +   Y+K       L    A  +     ++   H
Sbjct: 300 EHEILKNVSTNQLSCSIDAVEEKIELLSLNYKKTNSTLNNLLKELASIEANKIFQNFKTH 359

Query: 790 KIADVNFMSHIISEVD------SKELKSVMDALQK-----KIQSGIIMLVGISKEKKASV 838
              +        +++        KEL ++++  +        +  +++L G +       
Sbjct: 360 DNNNSKLAYVYRADLPEYLTSVQKELTTLINQDKTGDVDISNKQTLVLLSGAAPNGGTIK 419

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK--ADQAIAGVASFL 896
           ++           A +L +     L    GGG+    Q       K   +  +  + S L
Sbjct: 420 ILGP--------KAEELQKELKSKLSNLKGGGKGSSFQGKITKFEKGELEAVLKYLDSML 471


>gi|217416402|ref|NP_001129514.2| alanyl-tRNA editing protein Aarsd1 isoform 1 [Homo sapiens]
 gi|119581307|gb|EAW60903.1| alanyl-tRNA synthetase domain containing 1, isoform CRA_a [Homo
           sapiens]
 gi|194380464|dbj|BAG58385.1| unnamed protein product [Homo sapiens]
          Length = 586

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 144/390 (36%), Gaps = 29/390 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VV + T  + E GGQ  D G      +       ++             +  L     
Sbjct: 215 FQVVLEDTVLFPEGGGQPDDRGTINDISVLRVTRRGEQAD--------HFTQTPLDPGSQ 266

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +++ +D++ R      HS  HL+      +     +             ++     +T+ 
Sbjct: 267 VLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWEL--GRFRSAIELDTPS-MTAE 323

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN+ I   LPV  R ++ +D      +   L   +   +RVV++E  D    
Sbjct: 324 QVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIEGVDSN-- 381

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  ++G R    +       K+L + L
Sbjct: 382 ---MCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALL 438

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKE 808
           K    + V  V+++    + LQ  +      L V    S     D   +  I+   +   
Sbjct: 439 KCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSPDWGGVV-ILHRKEGDS 497

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
               M+ +  +I S   +L     ++K     L+      ++      L    A+VL G 
Sbjct: 498 --EFMNIIANEIGSEETLLFLTVGDEKGGGLFLLAGPPASVE-----TLGPRVAEVLEGK 550

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G G +    Q      ++  +A A +  ++
Sbjct: 551 GAGKKGRF-QGKATKMSRRMEAQALLQDYI 579


>gi|222480904|ref|YP_002567141.1| Threonyl/alanyl tRNA synthetase SAD [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453806|gb|ACM58071.1| Threonyl/alanyl tRNA synthetase SAD [Halorubrum lacusprofundi ATCC
           49239]
          Length = 432

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 152/441 (34%), Gaps = 67/441 (15%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E      S     +V D+T FYAE+GGQ  D G   G    + + DV ++   +      
Sbjct: 14  EFEATVESVDDRAIVLDETYFYAESGGQPADRGTIDG----ILLADVIERDGRVVHILDQ 69

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
               +     ++   +D   R   +  H+A+H+L+ A        +   G  I+   +R 
Sbjct: 70  DAETLPEAGETVSAVVDDAFRTYCTRAHTASHVLYGAARRTCD-DLGYAGFDISATKVRV 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------ 673
           D+T ++P+  A+L  +E   N  +  +LPV    +  ++A A    A             
Sbjct: 129 DLTTAEPLDDADLVELERLANRAVWDSLPVSWEALPEDEARAVDGIAFNTKTEEGAMSGS 188

Query: 674 DRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           + VRVV+V             E+      A CGGTHV +T EI  + ++  S+   G+ R
Sbjct: 189 EAVRVVTVGERGGERDGEHGGENAPTWDVAACGGTHVRNTSEIGPISVLDRSNPGEGVTR 248

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E   G  A              A+ L    G++   V+ + E   +L+         L 
Sbjct: 249 VEFAVGPTAIDREAAVHAAALDAATALDAQIGDLPDAVDRLRERADRLEADLQAATADLL 308

Query: 783 VEDLSCHKIADV--------NFMSHIISEVDSKELKSVMDALQKK--IQSGIIMLVGIS- 831
              L    + +V         +    + + D  +L+     +  +      I  +     
Sbjct: 309 AARLREFPVNNVDADGDDGATWAVGTVDDADPNDLREPAQRVLAEADAPDAIAAVGTGDS 368

Query: 832 ---------------KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
                           +  A     V + + D F                     P  AQ
Sbjct: 369 PFVVAAVAEEAVGGGDDDNAPNAGAVVDAVTDEFGGGGGGG--------------PTFAQ 414

Query: 877 SGGPNGNKADQAIAGVASFLK 897
            GG + +    A   V ++L+
Sbjct: 415 GGGLDAD--PDA---VVAWLR 430


>gi|217968140|ref|YP_002353646.1| Threonyl/alanyl tRNA synthetase SAD [Dictyoglomus turgidum DSM
           6724]
 gi|217337239|gb|ACK43032.1| Threonyl/alanyl tRNA synthetase SAD [Dictyoglomus turgidum DSM
           6724]
          Length = 383

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 82/406 (20%), Positives = 154/406 (37%), Gaps = 52/406 (12%)

Query: 495 IVQQGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           I      +E+    G  + +  D+T FY E GGQ  D G  +G+  +L+++ V +K   I
Sbjct: 13  IFNWKSRIEDIKQEGDFLLLSLDETIFYPEGGGQPSDRGEIVGEAWKLEVSKVFEKDGVI 72

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           +    I      +    + L I+   RR+    H+A HLL   L       +   G  + 
Sbjct: 73  WHKGKIFGENFPKIGEIVDLFINIDLRREYMEQHTAQHLLSAILEK--DYSLETTGFQVF 130

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            D  + ++ +        +K +E  VN+ I +N+ +                       +
Sbjct: 131 EDHTKIEIPYKGLDPEGFIKEVEGKVNEYIGRNISISIYW------------------KD 172

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           +  R+V +   D        CGG HV S GE+ LL I+          R+E + G+R   
Sbjct: 173 ESTRIVEIPGLD-----VNPCGGLHVKSLGELKLLKILDFYKKNNLYWRVEFVAGRRIIK 227

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC----- 788
            L  ++++ K +   L     N+V  V+ +  +   L+    K K +LN   L       
Sbjct: 228 QLEKREKEYKIIKEKLGNP--NIVEGVDMLLSKADNLEKQIRKLKEELNSYRLEALLKET 285

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDAL--QKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
            +  +  F++ ++ +++  +LK V   L  + K+   + +L     +     +   +   
Sbjct: 286 KEFKEYKFVARMM-DLEIGDLKYVAQGLFVKDKV---VGVLFNPQGQG---FVFGRS--- 335

Query: 847 LDRFNAVDLARLSAKVL--GGGGGGGRPHMAQSGGPNGNK-ADQAI 889
           +++    DL       L   G  G       Q    N  K  ++  
Sbjct: 336 VEK----DLWNSILSFLFRNGWRGSKEGEFLQGKIENPKKVIEEIF 377


>gi|194216871|ref|XP_001917615.1| PREDICTED: alanyl-tRNA synthetase domain containing 1 [Equus
           caballus]
          Length = 524

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 157/441 (35%), Gaps = 32/441 (7%)

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTP 519
           +           +K       +D    V S V  +  +G    +E +SG  ++VV + T 
Sbjct: 104 EHYAELLKKVSTKKPPPAMDDLDFATTVVSCVPELQTEGSNGKKEVLSG--LQVVLEDTL 161

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
            + E GGQ  D G   G  +        +             +  L     + + +D++ 
Sbjct: 162 LFPEGGGQPDDHGTIDGVPVLRVTRRGAQAD--------HFTQTPLTPGSEVQVRVDWER 213

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R      HS  HL+      + G   +             ++      T  ++ +IE +V
Sbjct: 214 RFDHMQQHSGQHLITAVADHLFGLKTTSWEL--GRLRSVIELDSPSVTTE-QVAAIEQSV 270

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N+ I   LPV  R ++ +D          L   +   +RVV+++  D       +C GTH
Sbjct: 271 NEKIRDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIKGVDSN-----MCCGTH 325

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           VS+  ++ ++ I++    +     +  + G R    +       K+L S LK    + V 
Sbjct: 326 VSNLSDLQVIKILATEKGKKNKTNLIFLAGNRVLKWMERSHGTEKALTSLLKCGAEDHVE 385

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            V+++    + LQ  +      L V    S     D   +   +   +       M+ + 
Sbjct: 386 AVKKLQNSTKLLQKSNLNLLRDLAVHVAHSLRNSPDWGGVVA-LHRKEGDS--EFMNIIA 442

Query: 818 KKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            +I S    L     ++K +   L+    + ++      L    A++L G G G +    
Sbjct: 443 NEIGSEETFLFLTVGDEKGAGLFLLAGPAEAVE-----TLGPRVAEILEGKGAGKKGRF- 496

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q      ++  +  A +  ++
Sbjct: 497 QGKATKMSRRLEVQALLQDYV 517


>gi|240102207|ref|YP_002958515.1| Alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           gammatolerans EJ3]
 gi|239909760|gb|ACS32651.1| Alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           gammatolerans EJ3]
          Length = 405

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 83/379 (21%), Positives = 151/379 (39%), Gaps = 35/379 (9%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G +V ++ D+T FY E GGQ  D G   G+G R+ +   +   +    H   +E      
Sbjct: 26  GDRVRLLLDRTIFYPEGGGQPSDRGFIEGNGFRVLV--DRVYGKDKIWHEGKLEGRFPEK 83

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + LT+D++ R +    H+  H+L   +  +L       G  I P+  + ++ +   +
Sbjct: 84  GDEVRLTLDWEWRYENMRAHTGQHILSAVIKGLL--GADTTGFQIFPEHGKIEIDYPGEL 141

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDG 686
           +   +  IE   N+II  ++ V   +        S      L  K    +R+V +   D 
Sbjct: 142 SWELVNEIERKTNEIIWGDVEVEVEVYEELPGELSERLRKPLSEKVKPPIRIVKIGTVD- 200

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTHV ST E+ +L +++       + RIE  TG RA   L    +      
Sbjct: 201 ----VTPCGGTHVRSTREVGVLKVLNFYRKSRKLWRIEFATGNRALRALNEILKDYWGSL 256

Query: 747 SFLKVSQGNVVGRV-------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
             +      +  RV       E++ EE  KL+    + K +  ++  +  KI  V  ++ 
Sbjct: 257 EEMPNKNRPLRERVIELRSELEKLEEEKSKLRRELWRWKAEALIK--NARKIDGVRVIT- 313

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           ++ E   K+ ++    L +     ++++ G +      V+   +E L    +   L R  
Sbjct: 314 LVEEWPMKDAQAFAIYLVEHNPGTVVLIAGEN-----YVVFAKSEKL--DVSMRSLLRAV 366

Query: 860 AKVLGG--------GGGGG 870
              +GG          GGG
Sbjct: 367 LAEVGGGGGGSDNLAKGGG 385


>gi|126275956|ref|XP_001386929.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Scheffersomyces stipitis CBS 6054]
 gi|126212798|gb|EAZ62906.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Pichia
           stipitis CBS 6054]
          Length = 430

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 124/394 (31%), Gaps = 34/394 (8%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           +  ++ +EA    K  V  + T  + E GGQ  D G        +       + +   +H
Sbjct: 36  KNKKVKDEAPKEIKYAVELEDTILFPEGGGQPYDKGSLTLPNNEVVHVTSVLRDKLTALH 95

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
                   +     + + +D+  R  L   H+  HLL           V       T   
Sbjct: 96  I---TDAPVEPGTEVTVDLDWDRRIDLMQQHTGQHLLSA---------VFDTYKLETLSW 143

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
              ++ +   +       I   VN  + + +     I         G         +  +
Sbjct: 144 SMGEIINYIELPEKVSDEIVAEVNAKVNKLIFEAIPIEVVTPDQHGGELDYSHIPDDYDL 203

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
               +     G   +  C GTH+SST +I  + ++ + S+R G  R+  I G R   +L 
Sbjct: 204 SQGIIRIVKIGQLDANPCCGTHLSSTSQIQSMSLLHQVSVRGGHSRLYFICGTRVYKYLS 263

Query: 737 GQDEKLKSLASF-LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH----KI 791
            Q E LK ++   L      V  +V  +   YRK          +L  ++ S      K 
Sbjct: 264 KQHELLKLVSGTHLSCQIEEVADKVALLNSNYRKALSREQNLLKELAADEASRIFTRFKN 323

Query: 792 ADVNFMSHIISEVDSKEL----KSVMDALQKKIQSGIIMLVGIS----KEKKASVLIVVT 843
            D        +E   + L    K +   +    +SG ++L              +L    
Sbjct: 324 TDAKVDYVYRAENSPEFLILVQKELTTLINSDKESGTVVLFNGDYPSGTGGMVKIL---- 379

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                   A  L       +    GGG+ +  Q 
Sbjct: 380 -----GPQAEVLQSELKSKIKNLKGGGKGNSFQG 408


>gi|320528734|ref|ZP_08029886.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Solobacterium moorei F0204]
 gi|320130944|gb|EFW23522.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Solobacterium moorei F0204]
          Length = 391

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 143/386 (37%), Gaps = 32/386 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V   T FY E GGQ  D G   G  +     + +            + +  L    +
Sbjct: 31  YELVLKDTIFYPEGGGQPCDKGTIQGVEVIAVQREKE--------RIVHITKQPLAPGEN 82

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID++ R  L  NH+  H+    +  +     S  G  +           +  +T  
Sbjct: 83  VHCEIDWEYRFDLMQNHTGEHIFSGVVKQLY--GYSNVGFHMGEYIC---ADFNGNLTEE 137

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            ++ +E  VN  I  NL V   + +  +       + +        R++S++  D     
Sbjct: 138 NIEEVERRVNQAIWMNLCVQEILCSPSETAKYDYRSKI--SIEGTTRIISIDGYD----- 190

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C G HV +TGEI +  +++         R+  ++G+RA ++L    ++  S++  L 
Sbjct: 191 MCACCGMHVKNTGEIGICKVINFE-KSRNKTRVFLLSGRRAFAYLSHIHQENSSISKLLS 249

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                +   V  + + Y  +Q  +    +++ ++D     I D    + ++   DS+ ++
Sbjct: 250 AKPLEISTAVSHLQQRYVDVQKAYRTVLMEMMMKDADQIPIQDAIIYTSVL--ADSEGMR 307

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  +    ++    +M++  ++   A V++  T DLL         R          GGG
Sbjct: 308 AFCNRCI-EMGISTVMVIAKTEVGYAYVIMSHTIDLLS-------IRAEFNAAIHAKGGG 359

Query: 871 RPHMAQSGGPN-GNKADQAIAGVASF 895
              M Q        +   A   V   
Sbjct: 360 NHEMMQGSCTAGPTEISIAFHAVTGI 385


>gi|240144247|ref|ZP_04742848.1| alanine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203745|gb|EEV02030.1| alanine--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 108

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFN 851
            V  ++  +  VD   L+ + D L++++  G+I+L   S E K +++++ T+  +    +
Sbjct: 1   GVKLLASAVDGVDMNGLRDLGDQLKEQLGEGVIVLAS-SCEGKVNLIVMATDAAMKQGAH 59

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           A +L +  A  +GGGG GGRP+MAQ+GG N     +AIA   + L+
Sbjct: 60  AGNLIKSIAGKVGGGG-GGRPNMAQAGGKNPAGILEAIAEAKTALE 104


>gi|193787605|dbj|BAG52811.1| unnamed protein product [Homo sapiens]
          Length = 543

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 144/390 (36%), Gaps = 29/390 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VV + T  + E GGQ  D G      +       ++             +  L     
Sbjct: 172 FQVVLEDTVLFPEGGGQPDDRGTINDISVLRVTRRGEQAD--------HFTQTPLDPGSQ 223

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +++ +D++ R      HS  HL+      +     +             ++     +T+ 
Sbjct: 224 VLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWEL--GRFRSAIELDTPS-MTAE 280

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN+ I   LPV  R ++ +D      +   L   +   +RVV++E  D    
Sbjct: 281 QVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIEGVDSN-- 338

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  ++G R    +       K+L + L
Sbjct: 339 ---MCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALL 395

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKE 808
           K    + V  V+++    + LQ  +      L V    S     D   +  I+   +   
Sbjct: 396 KCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSPDWGGVV-ILHRKEGDS 454

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
               M+ +  +I S   +L     ++K     L+      ++      L    A+VL G 
Sbjct: 455 --EFMNIIANEIGSEETLLFLTVGDEKGGGLFLLAGPPASVE-----TLGPRVAEVLEGK 507

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G G +    Q      ++  +A A +  ++
Sbjct: 508 GAGKKGRF-QGKATKMSRRMEAQALLQDYI 536


>gi|13376886|ref|NP_079543.1| alanyl-tRNA editing protein Aarsd1 isoform 2 [Homo sapiens]
 gi|13278807|gb|AAH04172.1| Alanyl-tRNA synthetase domain containing 1 [Homo sapiens]
 gi|17939656|gb|AAH19324.1| Alanyl-tRNA synthetase domain containing 1 [Homo sapiens]
 gi|119581308|gb|EAW60904.1| alanyl-tRNA synthetase domain containing 1, isoform CRA_b [Homo
           sapiens]
 gi|190689425|gb|ACE86487.1| alanyl-tRNA synthetase domain containing 1 protein [synthetic
           construct]
 gi|190690787|gb|ACE87168.1| alanyl-tRNA synthetase domain containing 1 protein [synthetic
           construct]
          Length = 525

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 144/390 (36%), Gaps = 29/390 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VV + T  + E GGQ  D G      +       ++             +  L     
Sbjct: 154 FQVVLEDTVLFPEGGGQPDDRGTINDISVLRVTRRGEQAD--------HFTQTPLDPGSQ 205

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +++ +D++ R      HS  HL+      +     +             ++     +T+ 
Sbjct: 206 VLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWEL--GRFRSAIELDTPS-MTAE 262

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN+ I   LPV  R ++ +D      +   L   +   +RVV++E  D    
Sbjct: 263 QVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIEGVDSN-- 320

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  ++G R    +       K+L + L
Sbjct: 321 ---MCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALL 377

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKE 808
           K    + V  V+++    + LQ  +      L V    S     D   +  I+   +   
Sbjct: 378 KCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSPDWGGVV-ILHRKEGDS 436

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
               M+ +  +I S   +L     ++K     L+      ++      L    A+VL G 
Sbjct: 437 --EFMNIIANEIGSEETLLFLTVGDEKGGGLFLLAGPPASVE-----TLGPRVAEVLEGK 489

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G G +    Q      ++  +A A +  ++
Sbjct: 490 GAGKKGRF-QGKATKMSRRMEAQALLQDYI 518


>gi|238878383|gb|EEQ42021.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 471

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 148/420 (35%), Gaps = 44/420 (10%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  V  + T  + E GGQ  D G         +I +V+       +    +   ++    
Sbjct: 63  EFGVELEDTILFPEGGGQPYDKGTITLLPDNTKIIEVKSVLRDK-LKAIHLVDELIEPGT 121

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + L +D+  R  +   H+  HLL     T      + + S          +   + I +
Sbjct: 122 QVRLNVDWGRRLDIMQQHTGQHLLSAVFDTYKLE--TLSWSMGETKDDINYIELPRKIDN 179

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG--- 686
             +  +++ VN +I  ++P+     ++                +  + +  +  +     
Sbjct: 180 DLVVEVQNKVNQLIVDSIPITVVTSDQHGHGQEHEHEHEHEHEHADIDISHIPDDYDLSQ 239

Query: 687 ---------GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
                    G   +  C GTH++ST +I  + ++ +S IR G  R+  I G R  +HL  
Sbjct: 240 GGIIRIVKIGELDANPCCGTHLTSTAQIQSIALLHQSPIRGGHSRLHFICGGRVANHLRK 299

Query: 738 QDEKLKSLA-SFLKVSQGNVVGRVEEIWEEYRK-------LQLIHAKRKLQLNVEDLSCH 789
           + E LK+++ + L  S   V  ++E +   Y+K       L    A  +     ++   H
Sbjct: 300 EHEILKNVSTNQLSCSIDAVEEKIELLSLNYKKTNSTLNNLLKELASIEANKIFQNFKTH 359

Query: 790 KIADVNFMSHIISEVD------SKELKSVMDALQK-----KIQSGIIMLVGISKEKKASV 838
              +        +++        KEL ++++  +        +  +++L G +       
Sbjct: 360 DNNNSKLAYVYRADLPEYLTSVQKELTTLINQDKTGDVDISNKQTLVLLSGAAPNGGTIK 419

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK--ADQAIAGVASFL 896
           ++           A +L +     L    GGG+    Q       K   +  +  + S L
Sbjct: 420 ILGP--------KAEELQKELKSKLSNLKGGGKGSSFQGKITKFEKGELEAVLKYLDSML 471


>gi|241715963|ref|XP_002413545.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215507361|gb|EEC16853.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 410

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 68/401 (16%), Positives = 138/401 (34%), Gaps = 34/401 (8%)

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           +K    +          +    ++  G+  ++A      E+V + T  + E GGQ  D G
Sbjct: 6   QKDSYLQHLETKVVKCDAAFLEVLTNGKKEKQAG----YELVLEDTVLFPEGGGQPDDRG 61

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            A G  +             +                 + L +D+  R      HS  HL
Sbjct: 62  TANGVPVLRVFRKNGHAIHFVH--------SPFTVGEEVALEVDWTRRYDHMQQHSGQHL 113

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +          H +        +    ++     I +A ++ +E  VN+ I + +PV  +
Sbjct: 114 ITAVAEDQFNWHTTSWSL--GDEVSFVELDAPAGIQAAGVQRLEAAVNEKIRECVPVSVK 171

Query: 653 IMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           +        +G    L       D +RVV++   D        C GTHVS+   +  + +
Sbjct: 172 LYEHGSEELNGVRTRLKLPEGEGDSIRVVTIAGVDSN-----TCCGTHVSNLSHLQAIKL 226

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +     + G   +  + G R   +L    ++ +SL + LK          E++ +  +  
Sbjct: 227 LYTEKGKQGKTNLYFLVGNRVLGYLDKAVKRERSLNTLLKCGPEEHAAMAEKLAKSLKLA 286

Query: 771 QLIHAKRKLQLNVEDLSCHKIAD--VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                     L + +    K  D    F S    E D++ +    + +  K     ++L 
Sbjct: 287 NKNALSVLRDLALAEAKLFKQLDPLPKFFSFHRREADAEFMSIFANEVGNKD----VLLF 342

Query: 829 GISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
             + ++K S   L+   +D++  +          ++L G G
Sbjct: 343 LTAGDEKGSGQFLLAGRDDIVSAY-----GPRVCQLLDGKG 378


>gi|198438284|ref|XP_002131660.1| PREDICTED: similar to Alanyl-tRNA synthetase domain-containing
           protein 1 [Ciona intestinalis]
          Length = 409

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 133/409 (32%), Gaps = 40/409 (9%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
             + + V  +  EV  + T  + E GGQ  D G      ++       K    +    + 
Sbjct: 30  NEIGKLVKTKGYEVELEDTILFPEGGGQPDDRGTINDVPVKRVTRKGSKALHFVTSELS- 88

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     ++ + +D++ R      HS  HL+     T+ G   +      +   +  
Sbjct: 89  -------VGDTVSMEVDWKRRFDHMQQHSGQHLITAIADTMFGFKTTSWDLGKSISFIEL 141

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRV 678
           D      +T+ +L  IE   N  I + + V+  +      I     A  L   +   VR+
Sbjct: 142 DTP---AVTADQLFQIECCANKSIREGVDVIVHVTQVGSPILQSVRARGLPDDHVGDVRI 198

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V ++  D       +C GTHVS+   +  + ++S    + G   +  +TG R   +    
Sbjct: 199 VEMKGIDTN-----MCCGTHVSNLSHLQCIKLLSAEKGKKGKTNLCFLTGDRILDYAGKC 253

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC----HKIADV 794
               K L   LK      V  VE   ++ R  Q         + V + +           
Sbjct: 254 YANEKELTKQLKCGPEQHVEAVERSMKQLRVAQKNCTTLLRDVAVLEAAIFTKKFDAGST 313

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK--ASVLIVVTEDLLDRFNA 852
             +S    E + + +  + + +  +       L     ++K     LI            
Sbjct: 314 KLLSMHRKEGNVEFMNIISNEVSDQ-----AFLFLTVGDEKGEGMFLISGP--------- 359

Query: 853 VDLARLSAKVLGG---GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +  +     L     G G  +    Q         ++A+A V  ++ K
Sbjct: 360 GNFIKECGTTLIETIVGKGQMKEFKMQGKAQKLQNREKALAVVQEYINK 408


>gi|260835389|ref|XP_002612691.1| hypothetical protein BRAFLDRAFT_127497 [Branchiostoma floridae]
 gi|229298070|gb|EEN68700.1| hypothetical protein BRAFLDRAFT_127497 [Branchiostoma floridae]
          Length = 407

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 138/418 (33%), Gaps = 35/418 (8%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
              SS V +      ++ +       EV+ + T  + E GGQ  D G      +      
Sbjct: 12  TEFSSKVVSCNPGQLVISKKKKQPGYEVILEDTILFPEGGGQPDDRGKINDVDVIRVTRK 71

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL--STILGS 603
             +    +           L     + + +D+  R      HS  HL+           +
Sbjct: 72  QNQAVHFVET--------PLEVGSEVKMEVDWTRRFDHMQQHSGQHLITAIAEAKFGYKT 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
                GS ++   +         IT  +L  +E  VN+ I + +P+  R++         
Sbjct: 124 TSWDLGSKVSSIEMDTPT-----ITLEQLSELEREVNECIRRQIPMTPRLLEPGSPELEQ 178

Query: 664 AAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             +  L   +   VRVV +E  D        C GTHVS+   +  + ++S    + G   
Sbjct: 179 VRSRGLPDDHIGPVRVVEIEGIDHN-----TCCGTHVSNLAHLQAIKLLSLEKGKKGKTN 233

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +  + G R    +    ++ K L   LK      V   +++ +  R            + 
Sbjct: 234 VMFVAGNRVLDFVGRAYDREKGLTGILKCPPEEHVEMADKLQKSLRISNKTCTGLLRDVA 293

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKA-SVLI 840
           V +   +K          +   +       M+ +  ++ +   ++L+ +  EK A + L+
Sbjct: 294 VLEAQRYKSQPNRDPVFCLHRKEGDS--EFMNIIANEVGNENALVLLSVGDEKGAGTFLL 351

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
               D+++           A+VL G G   R    Q            +      L++
Sbjct: 352 SGPADVVEAV-----GPKVAEVLEGKGAAKRGRF-QGKATKLAN----LKLAEEVLRE 399


>gi|123884206|sp|Q08B09|AASDA_XENLA RecName: Full=Alanyl-tRNA editing protein Aarsd1-A; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein
           1-A
 gi|115529163|gb|AAI24926.1| Aarsd1-a protein [Xenopus laevis]
          Length = 412

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 74/395 (18%), Positives = 145/395 (36%), Gaps = 38/395 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+   T  + E GGQ  D G        + +  V ++        A      L     ++
Sbjct: 42  VLLKDTVLFPEGGGQPDDRG----FIGEVPVLRVIRQGPDAVHFVAS----PLDPATEVL 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + ID+  R      HS  HL+     ++ G   +          +  D      +T+ +L
Sbjct: 94  VKIDWNRRFDHMQQHSGQHLVTAIADSLYGFKTTSWDLGRQRSVIELDTPL---VTTEQL 150

Query: 633 KSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++IE   N  I +++PV  R I   +       +  L   +   VR++ +E  D      
Sbjct: 151 EAIEKIANQKIREHVPVHVRLITVDDPEFDMVRSRGLPDDHAGPVRIIDIEGVDAN---- 206

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            +C GTHV +  ++ ++ I+     +     +  ++G+R   ++       K+L S LK 
Sbjct: 207 -MCCGTHVRNLSDLQMIKILGTEKGKKNKTNLIFLSGERVLKYVSRSYNTEKTLTSLLKN 265

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKEL 809
                +  V+++ +  + LQ  +      L V        K     F S    E D+   
Sbjct: 266 GPEEHIEAVDKLQKSVKALQKNNLTLLRDLAVLTAENFKSKADRGKFFSLHRKEGDN--- 322

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
              M+ +   I +   +L     ++K S   L+     ++++F          ++L G G
Sbjct: 323 -EFMNIIANVIGTEDTLLFLTIGDEKTSGLFLLAGPPGIVEKF-----GPRVCEILDGKG 376

Query: 868 GG--GRPHMAQSGGPNGNKADQA---IAGVASFLK 897
            G  GR    Q      ++  +    +  V S ++
Sbjct: 377 AGKCGR---FQGKANKMSQRAEVEVLLQKVISSVE 408


>gi|37784136|gb|AAO83540.1| alanyl-tRNA synthetase [Hydrogenothermus marinus]
          Length = 54

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 38/53 (71%)

Query: 40 NSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM 92
          N+GMV FKN+F G EK  Y+   + QK  R  GKHNDLDNVG T RHHTFFEM
Sbjct: 1  NAGMVQFKNVFLGLEKRPYKRAASCQKVFRVSGKHNDLDNVGYTPRHHTFFEM 53


>gi|261368157|ref|ZP_05981040.1| alanyl-tRNA synthetase [Subdoligranulum variabile DSM 15176]
 gi|282569921|gb|EFB75456.1| alanyl-tRNA synthetase [Subdoligranulum variabile DSM 15176]
          Length = 383

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 117/376 (31%), Gaps = 36/376 (9%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            S     VV D+T F+ E GGQ  DTG      +    TD +                 L
Sbjct: 24  ESKDGWAVVLDRTAFFPEGGGQPCDTGRLGDARVLAVHTDGE--------TITHTTDAPL 75

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               ++   +D+  R      H+  H+L   L  +        G  I    +R D +   
Sbjct: 76  PVGAAVEGILDWAARLDAMQQHTGEHILSGTLHRLY--GAENVGFHIGSPYVRMDTSIP- 132

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
                    +                R           AA L  T+Y  +  +       
Sbjct: 133 ---------LTAEQLAAAEAQANAAVRADTPVHCYVPDAATLAATEYRSKKELEGPVRLV 183

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   C GTH++ TGE+ L+ I+S    + G+ R+    GQRA   +       +S 
Sbjct: 184 EAGGDRCACCGTHLARTGEVGLIKIISAQHYKVGM-RLAVACGQRAYDAVAAGWADAESA 242

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
              L V  G++ G    + E   KL+   A  +  L     +  +       +      D
Sbjct: 243 GRLLSVPVGSLTGAAGRLREAEAKLKQRLAALQNALATACAAGAEPG--KPCTVWAEGAD 300

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG- 864
              L+ +  A+  +  +    L    +    ++      D           R + + L  
Sbjct: 301 GDGLRRIAMAVTAQTGAPCCALAPGGQGLAYALAAAPGGD----------VRAACQALNA 350

Query: 865 --GGGGGGRPHMAQSG 878
              G GGG+P   Q  
Sbjct: 351 AFAGRGGGKPAFCQGS 366


>gi|119112306|ref|XP_311697.3| AGAP003413-PA [Anopheles gambiae str. PEST]
 gi|116129883|gb|EAA07381.3| AGAP003413-PA [Anopheles gambiae str. PEST]
          Length = 406

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 65/387 (16%), Positives = 126/387 (32%), Gaps = 40/387 (10%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           ++V          V+F+ T  + E GGQ  D G   G  ++     V +K          
Sbjct: 17  KVVSCEKVAGGFNVIFEDTILFPEGGGQPTDHGTVGGRAVK----SVVRKGSEAIHFLED 72

Query: 560 VERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +G         +V  +D+  R      HS  HL+          +            +
Sbjct: 73  DGKGSQPFAAGEQVVQCVDWNRRFDHMQQHSGQHLITAIFDREFKYNTKSWWLGTESSYI 132

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYN 673
             +    K +T  +L+ +E   N +I    PV   +   +D             L    +
Sbjct: 133 DLEA---KDVTREQLERVESICNQLIVDCTPVRVDVYEPDDPALKSDVTRATRGLPEDVS 189

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             +RVV++   +       +C GTHV + G++  + ++S      G   +  + G R   
Sbjct: 190 GPLRVVTIAGIESN-----MCCGTHVRNLGQLQSVKLLSVE-KAKGKCLVHFLVGGRVLR 243

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            L    ++   L + L     + +   +++    R  Q I  K   +L   +    K+  
Sbjct: 244 KLSECYDREVQLNTLLNGGPSSHIDLAKKLQSTVRATQRIAKKLTTELATTE--AEKLNQ 301

Query: 794 VN--------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE--KKASVLI-VV 842
                        H     DS  + + +  ++  +    I L     +   K  +++   
Sbjct: 302 QRDSGSAPKYVSLHRGDGQDSDFINTFLRMVK--LPDCFIFLTNADTDGSGKGQLVLQGR 359

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGG 869
            +D+        L      +L G G G
Sbjct: 360 PDDVAK------LGPEICTLLEGKGNG 380


>gi|4928218|gb|AAD33469.1|AF130451_1 alanyl-tRNA synthetase [Terrimonas ferruginea]
          Length = 56

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 35/55 (63%)

Query: 38 FTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM 92
          FTN+GM  FK+ F G  KP    V   QKC+R  GKHNDL+ VG    HHTFFEM
Sbjct: 1  FTNAGMNQFKDYFLGNRKPASARVADTQKCLRVSGKHNDLEEVGVDTYHHTFFEM 55


>gi|170288890|ref|YP_001739128.1| threonyl/alanyl tRNA synthetase SAD [Thermotoga sp. RQ2]
 gi|33413314|emb|CAD67939.1| hypothetical protein [Thermotoga sp. RQ2]
 gi|170176393|gb|ACB09445.1| Threonyl/alanyl tRNA synthetase SAD [Thermotoga sp. RQ2]
          Length = 373

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 129/327 (39%), Gaps = 23/327 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           E    G+K+  V   +PFY +  GGQLGD G      +   +   +K    +    A +E
Sbjct: 10  EVIKDGEKIIAVSRTSPFYTDGKGGQLGDRGKIGPANV---LKVKEKNGYILHYLDAHLE 66

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G           ID   R+ ++  H+A H+L  A   +    +      +       D+
Sbjct: 67  PGEY------EYEIDLARRKDIACQHTAQHILSAAFLKVA--DLETVSFLMGERVSTIDL 118

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +    L+  ED  N+++     V    + +E+A       L       +VRVV +
Sbjct: 119 NAP-FVLEDVLEEAEDLANEVVRSCERVEILEIEKEEAEKMNLRKL--PNVEGKVRVVKI 175

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
              D        CGG HV +TGEI L+ IV    ++  + RI  + G RA      +D+ 
Sbjct: 176 GDFD-----VTACGGFHVENTGEIGLIKIVDTEKVKKVLTRIYFVAGDRALKDYREKDKL 230

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHI 800
           LKSL+  L  S   ++ R E + EE ++      K   +         +   +  +  + 
Sbjct: 231 LKSLSRVLTTSTKELLKRAENLLEEVKEKSAKLDKLSEKYAEILSKVAEPEKIGKYYLYH 290

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIML 827
            S    +E+K +   L  + +  I++L
Sbjct: 291 FSGT-PEEMKYLPKFLADR-KDTIVLL 315


>gi|218508118|ref|ZP_03505996.1| alanyl-tRNA synthetase [Rhizobium etli Brasil 5]
          Length = 177

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 90/201 (44%), Positives = 123/201 (61%), Gaps = 24/201 (11%)

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           I ETL+ E+ RF KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L 
Sbjct: 1   ISETLKLEENRFRKTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALR 60

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
           AR   G+DI  F  A++ Q++ AR+H  G G   TE +WF L+EK+GAT+F+GYD     
Sbjct: 61  AR-EIGVDISGFTDAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYD----- 114

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                             T     +V+AIV+ G + E A +G KV+VV +QTPFY E+GG
Sbjct: 115 ------------------TEAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGG 156

Query: 527 QLGDTGCAIGDGIRLQITDVQ 547
           Q+GDTG    D  +++I D Q
Sbjct: 157 QMGDTGVISSDHGKIEIFDTQ 177


>gi|160943556|ref|ZP_02090789.1| hypothetical protein FAEPRAM212_01049 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445235|gb|EDP22238.1| hypothetical protein FAEPRAM212_01049 [Faecalibacterium prausnitzii
           M21/2]
          Length = 396

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 141/411 (34%), Gaps = 36/411 (8%)

Query: 494 AIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           A   + E V  A    +      +  D T FY E GGQ  D G        +       +
Sbjct: 12  AFRTECESVILATEPDEKTGGGRIALDGTVFYPEGGGQPADRGTLTLPDGTVLRVLDVHE 71

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G+  H             ++   ID+  R      H+  H+L   L  +        G
Sbjct: 72  QAGVIWHTVDALPAAAAPGAAVAGCIDWDWRFDKMQQHTGEHILSGILHQMF--GAENVG 129

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             +  + +R D +    I+   L+  E   N I+ Q++PV+     RE+  A        
Sbjct: 130 FHVGTEVVRMDTSVP--ISPEGLRQAELAANRIVWQDVPVLISYPTREELAA--LVYRSK 185

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            +   +VR+V++   D        C GTH  +TG++  + I++  + + G+ R+  + G 
Sbjct: 186 KEIEGQVRIVTIPGAD-----VCACCGTHTRTTGQVGQIKILASENYKGGV-RLSVVCGA 239

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLS 787
           RA +       +   + + L          V  +++EY  L+  H     QL   +  L+
Sbjct: 240 RALAAAQAMRARQAEIGALLSAKADQTAVAVHRVYDEYTALKFTHFGLCSQLFDALAQLT 299

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                 +      +  +D   L  +   L +        L    K      L     D+ 
Sbjct: 300 APDADAIR----TLPGLDPDGLHRLAVRLTEATTGLCAALTPTEK-GTGYCLARRDGDVR 354

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                  L +     L  G GGG+P + Q          +    V  FLK+
Sbjct: 355 A------LTKALNAALN-GRGGGKPGICQGS---CAATPE---QVERFLKE 392


>gi|295103797|emb|CBL01341.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Faecalibacterium prausnitzii
           SL3/3]
          Length = 396

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 82/411 (19%), Positives = 140/411 (34%), Gaps = 36/411 (8%)

Query: 494 AIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           A     E V  A    +      +  D T FY E GGQ  D G        +       +
Sbjct: 12  AFRTGCESVILATEPDEKTGGGRIALDGTVFYPEGGGQPADRGTLTLPDGTVLRVSDVHE 71

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             GI  H             ++   ID+  R      H+  H+L   L  +        G
Sbjct: 72  QAGIIWHTVDALPAAAAPGAAVAGCIDWDWRFDKMQQHTGEHILSGILHQMF--GAENVG 129

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             +  + +R D +    I+   L+  E   N I+ Q++PV+     RE+  A        
Sbjct: 130 FHVGTEVVRMDTSVP--ISPEGLRQAELAANRIVWQDVPVLISYPTREELAA--LVYRSK 185

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            +   +VR+V++   D        C GTH  +TG++  + I++  + + G+ R+  + G 
Sbjct: 186 KEIEGQVRIVTIPGAD-----VCACCGTHTRTTGQVGQIKILASENYKGGV-RLSVVCGA 239

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLS 787
           RA +       +   + + L          V  +++EY  L+  H     QL   +  L+
Sbjct: 240 RALAAAQAMRARQAEIGALLSAKADQTAVAVHRVYDEYTALKFTHFGLCSQLFDALAQLT 299

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                 +      +  +D   L  +   L +        L    K      L     D+ 
Sbjct: 300 APDADAIR----TLPGLDPDGLHRLAVRLTEATTGLCAALTPTEK-GTGYCLARRDGDVR 354

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                  L +     L  G GGG+P + Q          +    V  FLK+
Sbjct: 355 A------LTKALNAALN-GRGGGKPGICQGS---CAATPE---QVERFLKE 392


>gi|152002523|dbj|BAF73547.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W]
          Length = 85

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query: 2  SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR  +L+FF    H +  SSSLIP N+  L++ N+G+ P K  F G +KP ++ +
Sbjct: 1  MTSFEIRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQKPPFRRI 60

Query: 62 TTVQKCV 68
          T VQKC+
Sbjct: 61 TNVQKCI 67


>gi|330913784|ref|XP_003296380.1| hypothetical protein PTT_06374 [Pyrenophora teres f. teres 0-1]
 gi|311331519|gb|EFQ95522.1| hypothetical protein PTT_06374 [Pyrenophora teres f. teres 0-1]
          Length = 446

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 134/382 (35%), Gaps = 27/382 (7%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI-VERG 563
           A S +   +    +  + E GGQ  D G            ++  ++        I     
Sbjct: 63  ATSDKTYLIELADSVLFPEGGGQHTDHGVLTTLKDEQSKEEIPIRSIQRHGLRCILFSPT 122

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +  T+D+  R  L   H+  HLL   +    G  +   G  +   G    V  
Sbjct: 123 PLSPGTPVRQTVDFARRWDLMQQHTGQHLLSAVM---DGMDLPTLGWSMGQPGEMNYVEL 179

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +  +  E++ I+ + N  I +++P+        +   S +      K    VR + +  
Sbjct: 180 PRKPSDEEIEKIQKDCNAKIRESMPITVE---TPEGKGSDSLPDDYDKEKGVVRFIKIGD 236

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            D        C GTH+ ++  I ++ +    S+R    R+    G RA          L+
Sbjct: 237 MDYN-----ACCGTHLQNSAHISVILLHHTQSVRGTNCRLFFTAGDRAIKMATEAINGLR 291

Query: 744 SLASFLKVS--QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI----ADVNFM 797
           ++A  L  S    +V   V+ + ++  + +    K   ++   +    K      +V F 
Sbjct: 292 TIAVSLSSSSAPADVAAGVQRMGDQVSESRKKEKKLLAEIASFEGERIKTQLHSQEVAFS 351

Query: 798 SHIISEVDSKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
                 +D   +  V   ++  ++   G+++L     +   S+L+    +L+++  A   
Sbjct: 352 HRTTDGLD--FINMVFFEVKDTVKERGGVVLLCSGEVKTSGSILVFGRPELVEKMAAK-- 407

Query: 856 ARLSAKVLGGGGGGGRPHMAQS 877
            +          GGG+    Q 
Sbjct: 408 VKEVVSTA---KGGGKGEKWQG 426


>gi|156406576|ref|XP_001641121.1| predicted protein [Nematostella vectensis]
 gi|156228258|gb|EDO49058.1| predicted protein [Nematostella vectensis]
          Length = 386

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 127/361 (35%), Gaps = 26/361 (7%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           V   +  ++       EVV + T  + E GGQ  D G   G    +++  V ++      
Sbjct: 18  VVSCKPAKQNKKDDVFEVVLEDTILFPEGGGQPDDKGMING----IEVLQVFRRGRQAVH 73

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +      +       L +D++ R      HS  HLL   +    G   +         
Sbjct: 74  VLSQH----IDEGAQASLVLDWERRFDHMQQHSGQHLLSALIENKFGYKTTSWELGRVRS 129

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL--LGTKYN 673
            +       K +T  E+  IE + N  I  ++PV   +   +       A    L   + 
Sbjct: 130 HIELHC---KCLTPDEIACIESSANAAIRGHVPVCVHVYPDKTDPELEEAQTRGLPDDHI 186

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             +RV+ ++  D       +C GTHV +  ++  + +  +     G  R+  + G R   
Sbjct: 187 GPIRVIEIKGID-----KNMCCGTHVDNLSQVQAVKLFPDVDSMRGGCRLFFLCGDRVFK 241

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK--I 791
           HL    E  ++L+  L          VE I    R        +  ++   + S  K  +
Sbjct: 242 HLGRAMENDRALSKCLSCGPDEHTTAVERIQTSLRLANKSLKSQLREIAYLEASQIKSSL 301

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGII-MLVGISKEKKA-SVLIVVTEDLLDR 849
               F+       D   + +++     ++ S  I +LV +  +K     L++ +E  ++ 
Sbjct: 302 GGRTFIYIHRENGDMDYINTIV----NELGSLSIPLLVTVGPDKGPGQFLLLASEAEVNE 357

Query: 850 F 850
            
Sbjct: 358 L 358


>gi|15644472|ref|NP_229524.1| alanyl-tRNA synthetase-related protein [Thermotoga maritima MSB8]
 gi|4982303|gb|AAD36791.1|AE001812_1 alanyl-tRNA synthetase-related protein [Thermotoga maritima MSB8]
          Length = 373

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 128/327 (39%), Gaps = 23/327 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           E    G+K+  V   +PFY +  GGQLGD G      +   +   +K    +    A +E
Sbjct: 10  EVIKDGEKIIAVSRTSPFYPDGKGGQLGDRGKIGPANV---LKVKEKNGYILHYLDAHLE 66

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G           ID   R+ ++  H+A H+L  A   +    +      +       D+
Sbjct: 67  PG------DYECEIDPARRKDIACQHTAQHILSAAFLKVA--DLETVSFHMGERVSTIDL 118

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +    L+  ED  N+++     V    + +E+A       L       +VRVV +
Sbjct: 119 NAP-FVLEDVLEEAEDLANEVVRSCERVEILEIEKEEAEKMNLRKL--PNVEGKVRVVKI 175

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
              D        CGG HV +TGEI L+ IV    ++  + RI    G RA      +D+ 
Sbjct: 176 GDFD-----VTACGGFHVENTGEIGLIKIVDTEKVKKVLTRIYFTAGDRALKDYREKDKL 230

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHI 800
           LKSL+  L  S   ++ R E + EE ++      K   +         +   V  +  + 
Sbjct: 231 LKSLSRVLTTSTKELLKRAENLLEEVKEKSAKLDKLSEKYAEILSKVAEPEKVGKYYLYH 290

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIML 827
            S    +E+K +   L  + +  I++L
Sbjct: 291 FSGT-PEEMKYLPKFLADR-KDTIVLL 315


>gi|50552115|ref|XP_503532.1| YALI0E04246p [Yarrowia lipolytica]
 gi|49649401|emb|CAG79113.1| YALI0E04246p [Yarrowia lipolytica]
          Length = 415

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 130/368 (35%), Gaps = 27/368 (7%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           K EV  + T  + E GGQ  D G    +   + +  V++      +         +    
Sbjct: 42  KYEVELEDTILFPEGGGQPADLGTLSYEETSVPVNYVKRDG----LIAKHETDSPIEVGT 97

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALS----TILGSHVSQNGSCITPDGLRFDVTHSK 625
           ++ + +++  R      H+  HLL           L   +      +            K
Sbjct: 98  TVNVDLEWARRFDHMQQHTGQHLLSAIFDTRKLETLAWSLGDKFCYVE---------LPK 148

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYE 684
            +T  E+ +++  VN +I Q+L + T I+  E+  A+   +++    +D  V    +   
Sbjct: 149 RVTREEMDAVQAEVNRVIQQDLKITTTIITNEEEKAAADPSVVEKIPDDYDVNNGVIRVV 208

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           + G      C GTH++ST EI  + ++   ++R    R+  + G R   +       +K 
Sbjct: 209 NIGDIDHNPCCGTHLNSTREIGSVALLHTQAMRGSNCRVFFVCGDRVHKYASEAHRTIKM 268

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIIS 802
           + S L     ++  ++  + +  +           ++       +   +   N +     
Sbjct: 269 VNSHLSCLTEDIENKILALNQNLKDASNREKMWMAEVATFTAHNAKQDLETKNVVFVYKP 328

Query: 803 EVDSKELKSVMDALQK-KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSA 860
           E     L  +   +         I+  G      A ++I    D LD  +A    + +  
Sbjct: 329 EASLDFLNVIAKEIGDLAEGKTAILACGQGTAGGAIMIIG---DKLDEVSAK--VKDIVV 383

Query: 861 KVLGGGGG 868
            V GGG G
Sbjct: 384 NVKGGGKG 391


>gi|160902574|ref|YP_001568155.1| threonyl/alanyl tRNA synthetase SAD [Petrotoga mobilis SJ95]
 gi|160360218|gb|ABX31832.1| Threonyl/alanyl tRNA synthetase SAD [Petrotoga mobilis SJ95]
          Length = 369

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 135/375 (36%), Gaps = 38/375 (10%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +I+     G       +  PFY +        G  +GD  ++ I +V    E   + +  
Sbjct: 6   KIINVIKQGDNYFATIENNPFYPDG------KGGQLGDRGKIDIAEVLGTTETGVILNKH 59

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +  G           ID + R  ++  H+  H+L  A   I    +      +  +    
Sbjct: 60  LNPGEYF------YEIDKKRRFDIAQQHTGQHILSAAFERIGS--LKTVSFKMGEEYSTI 111

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+     I    L   ++  NDII++ + V     ++E A        L  K +  VR++
Sbjct: 112 DLDGQN-IEEELLNKAQELSNDIISKCIEVEEIYTDKERAQKYNLRKPLSDKISGEVRLI 170

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            ++  D      + CGG HV +TG I LL I +   ++  + R+  + G RA +    +D
Sbjct: 171 KIDDFD-----ISACGGFHVKNTGNINLLKITNTEKVKGNLTRVYFLAGLRAINDYSQKD 225

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN--VEDLSCHK---IADV 794
             LK+++S L     ++  +VE +  E +  +    K   +    +      K   +   
Sbjct: 226 SILKNISSILTSGLYDLENKVESLLNENKDYKNRMKKLAEKNAYYLAKDLIEKALVVNKN 285

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             + +   +  +  L   +D L+         L+   ++ K   +           N  +
Sbjct: 286 KIVYYKKEDETADFLHKYVD-LKD------YTLIVEDEKDKTFSIFS------KNINCKE 332

Query: 855 LARLSAKVLGGGGGG 869
           L           GGG
Sbjct: 333 LIEKLKTNNNIKGGG 347


>gi|226328741|ref|ZP_03804259.1| hypothetical protein PROPEN_02641 [Proteus penneri ATCC 35198]
 gi|225201927|gb|EEG84281.1| hypothetical protein PROPEN_02641 [Proteus penneri ATCC 35198]
          Length = 73

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +    + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG + +    
Sbjct: 2   LSTISDGKVSLIVGVTKDLTAKVKAGELISFVAQQI-GGKGGGRPDMAQAGGTDIDALPA 60

Query: 888 AIAGVASFLK 897
           A+A V  +++
Sbjct: 61  ALASVDEWVE 70


>gi|86160636|ref|YP_467421.1| threonyl/alanyl tRNA synthetase, SAD [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777147|gb|ABC83984.1| Threonyl/alanyl tRNA synthetase, SAD [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 408

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 133/381 (34%), Gaps = 30/381 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+T FY E GGQ  D G   G  +        +    +       E         + 
Sbjct: 31  VVLDRTAFYPEGGGQPADRGRLGGAAVVDVQEVDGEVLHAL-------EGAPPDAGAPVP 83

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAE 631
             +D   RR     H   HLL  A     G+H       +  +    D+      +    
Sbjct: 84  GEVDAVRRRDHLQQHHGQHLLSAAFEATAGAHTVS--FHLGAETCTIDLDAAPASLGEER 141

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-VHS 690
           L++ E   ND++ ++LPV  R     +  A               R+V V     G V  
Sbjct: 142 LRAAEARANDLVFRDLPVTARDFAPAELAALPLRKA----PEKGARIVVVGDPARGEVVD 197

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           ++ CGGTH   TG +  + ++       G  R+E + G RA   L     +L + A+ L+
Sbjct: 198 ASPCGGTHPRRTGAVGAIAVLGAQRWGGGT-RVEFVCGARAVRALAEARGRLAAAAASLR 256

Query: 751 VSQGNVVGRVEEIWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            +   V      +  E     + L  + A           +      V  +    +   +
Sbjct: 257 CAPAEVPAATARLAAESAQRRKDLDRLAAALAEGEADRLATAQPAGAVRAVLAPPAPGAA 316

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL------LDRFNAVDLARLSA 860
             L++V   L  +   G    +G  ++ +A +      +         R +     R +A
Sbjct: 317 GYLRAVASGLAAR---GRAAFLGAVEDGRAHLAFARPREAGPGAPGAVRLDMGARVREAA 373

Query: 861 KVLGGGGGGGRPHMAQSGGPN 881
             L GG GGG P +AQ  GP+
Sbjct: 374 ARL-GGKGGGAPDLAQGSGPD 393


>gi|328951539|ref|YP_004368874.1| Threonyl/alanyl tRNA synthetase SAD [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451863|gb|AEB12764.1| Threonyl/alanyl tRNA synthetase SAD [Marinithermus hydrothermalis
           DSM 14884]
          Length = 387

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 131/371 (35%), Gaps = 34/371 (9%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G     V DQT FY  +GGQ  DTG   G  +   +   +       +         L
Sbjct: 22  SEGATHYAVLDQTLFYPTSGGQPHDTGVLGGVRVTKVLEREKGGEILHVLE------APL 75

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   I +  R +    H+A H+L  A     G         ++       +    
Sbjct: 76  EAGQVVEGEIHWNRRYRHMQRHTAQHILSQAFVRAAGWPTVS----VSLARPTCVIDLEA 131

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
                 ++  E   N  +  NLP   R     +A A+        K   R+RVV +E  D
Sbjct: 132 DPDEGVIRKAEALANWAVYANLP--IRAFFASEAEAAQLPLRRAPKVTGRIRVVEIEGWD 189

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                 A CGGTH+ S+ E   + I+     R G  R+    G  A      +   LK++
Sbjct: 190 -----LAACGGTHLRSSAEAGPIKILKYEKHRRGTTRVYFTAGWEALEDYAAKHTALKTV 244

Query: 746 ASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           A         V  RV   E + +E R       +   +  V +L          ++ ++ 
Sbjct: 245 AEHFSAQPLEVPARVAKLEALLQEVRGALQETQRLLAERIVRELLETHPD--RTIAALVP 302

Query: 803 EVDSKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            V       V+D +  ++    G++ L+   + ++A VL+  T+      +   L   + 
Sbjct: 303 AV-------VLDEVGARLAEWPGVLALLVAPEGERARVLL--TQHPERGADLRALWNAAL 353

Query: 861 KVLGGGGGGGR 871
           + L G  GGGR
Sbjct: 354 RPL-GAKGGGR 363


>gi|301117852|ref|XP_002906654.1| alanyl-tRNA synthetase domain-containing protein 1, putative
           [Phytophthora infestans T30-4]
 gi|262108003|gb|EEY66055.1| alanyl-tRNA synthetase domain-containing protein 1, putative
           [Phytophthora infestans T30-4]
          Length = 442

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 119/344 (34%), Gaps = 21/344 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+    T  + E GGQ  DTG   G  +        +    I V      +        
Sbjct: 68  YELELHDTVLFPEGGGQPWDTGNIDGVQVDQVYVQDGRCLHRIPVKDG--AKAPFVEGQE 125

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHAL-STILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +V  +D+  R      HSA HL           +     G     +    ++     I S
Sbjct: 126 VVAVVDWARRFDHMQQHSAQHLFSAVAERYGYDTTTWSLG----EERCNVEL-EKNVIPS 180

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGV 688
             L+ IE+ VN  I  +L +               AA     +    +R+V+++  D   
Sbjct: 181 ETLQKIEEEVNQAIVSSLTMTPSFAKPGTKEWEKIAAKFDPGQMPKAMRIVTIDGLD--- 237

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C GTHV +  ++  L ++S   +  G  R+  + G+R         +   +L   
Sbjct: 238 --VNPCCGTHVQNLAQLRSLRVLSTE-LARGASRVWFVAGERVNREFSRMLKNEHALTKL 294

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSCHKIADVNFMSHIISEVD 805
           L  +  +   RVE++ +  +         + +L      DL       V  +++   E D
Sbjct: 295 LSSAPDDHASRVEKLLQFQKSTTKELKSLQKELAASIARDLVAQTSQGV--VTYHRDEGD 352

Query: 806 SKELKSVMDALQKKIQSGIIML-VGISKEKKASVLIVVTEDLLD 848
              L++++  L    +  + +L  G  + +   ++    E ++ 
Sbjct: 353 LGFLQTLLGLLGDTKKDAVFVLTAGDVRGEGLFLVAGPPEFIIA 396


>gi|118566844|gb|ABL01741.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 140

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/136 (47%), Positives = 95/136 (69%), Gaps = 1/136 (0%)

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328
             + RVI DH+RS +FL+ADG+LP+NE RGYVLRRI+RRA+ +  +LG  E     L+  
Sbjct: 6   NKSLRVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGP 65

Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388
           L   MGSA  EL + +  +E+ L++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF
Sbjct: 66  LIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQ-GDTLDGETAF 124

Query: 389 KLYDTHGLPLDIMQDI 404
           +LYDT+G P+D+  D+
Sbjct: 125 RLYDTYGFPVDLTADV 140


>gi|160914445|ref|ZP_02076660.1| hypothetical protein EUBDOL_00449 [Eubacterium dolichum DSM 3991]
 gi|158433603|gb|EDP11892.1| hypothetical protein EUBDOL_00449 [Eubacterium dolichum DSM 3991]
          Length = 385

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 133/383 (34%), Gaps = 29/383 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
              +V+              T FY E GG   D G      ++    +            
Sbjct: 15  NTSVVKVVEENGMYWHACKDTIFYKEGGGMASDIGMINDHLVQDLKLEDGY--------- 65

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +      + E ++ ++++   R +    H+A HL+   +  +       +      + +
Sbjct: 66  -MWHLLDEKLEGTVTMSVNLHERFRKCQIHTAQHLISALMQNVYKVKTLAHHVGDEENDV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            FD+       + E   ++   N +I  +L V  +     +A    +   +     D +R
Sbjct: 125 EFDLKDFNEKMAFE---LQVLCNGLIRDDLAVTIQYPTPSEAKKHVSGKDVN---RDDLR 178

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           VV +   D       LCG  HV S   + +LYI        G + I  I G +       
Sbjct: 179 VVRIGTLDYN-----LCGCMHVPSLRYLQMLYISGFEKTTKGYK-IRYIVGDQLLDCTSK 232

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-F 796
           + + L  ++  L V     V  V  +  E R+L       K Q   E L+   I D +  
Sbjct: 233 RYKVLDEVSQTLAVPHLYAVTGVHRVINENRQLNRNVLVWK-QKYYEMLAKELIKDHSDV 291

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           + H   ++D++ L  +   + K     ++            +++   +     F+A ++ 
Sbjct: 292 VVHCFDDIDARSLSMMAQYVVKNYHKNVV--FAAKIYDNVHIVVASGD--TASFDAKEVF 347

Query: 857 RLSAKVLGGGGGGGRPHMAQSGG 879
              A+     GGG R  MAQ GG
Sbjct: 348 AQFAEQYHLKGGGNRA-MAQGGG 369


>gi|254564877|ref|XP_002489549.1| Putative protein of unknown function with strong similarity to
           alanyl-tRNA synthases from Eubacteria [Pichia pastoris
           GS115]
 gi|238029345|emb|CAY67268.1| Putative protein of unknown function with strong similarity to
           alanyl-tRNA synthases from Eubacteria [Pichia pastoris
           GS115]
 gi|328349971|emb|CCA36371.1| metal-dependent hydrolase [Pichia pastoris CBS 7435]
          Length = 411

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 129/374 (34%), Gaps = 28/374 (7%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
               Q   V  + T  + E GGQ  DTG    +     +  V +       +        
Sbjct: 43  IGENQLYLVELEDTVLFPEGGGQPSDTGIVASEDHSFDVIYVGRNGLNAVHYVIAPGDLP 102

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L+   ++V+++++++R      H+  HLL   L  I     +      T D +   V   
Sbjct: 103 LKVGDNVVVSVNWESRWDHMQQHTGQHLLSALLK-IHFDVPTLGWGMGTGDTVLNYVEIP 161

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +   E++ +   +   I QNLP+     +                        S+   
Sbjct: 162 RKLEDFEIEQLNLQIKATINQNLPISVVEHDEIHEEK-----------------GSMRDI 204

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
             G   +  C GTH+ S+ +I  +  +++ S +    R++ I G R    +      LK+
Sbjct: 205 RIGHLDNNSCCGTHLQSSLQIKNVIALNQISGKKTNTRLQFIVGDRVNDFVSQSFSILKN 264

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           L + L      +  +V ++    +       K   +L   ++   +I         +   
Sbjct: 265 LRNQLSCPDELIPEKVAQLNSSIKASNTTEKKMLKELA--EIKAQEIVASPSKIIFVDSE 322

Query: 805 DSKELKSVMDALQKK-IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            S +  S +  L  K I+   ++L+    +    V     +D  D  ++V L +      
Sbjct: 323 FSNDFTSNIFKLSNKAIKDKTVILLSGKNQGSLIVYGENVKDTTDGISSV-LEKSVL--- 378

Query: 864 GGGGGGGRPHMAQS 877
               GGG P   Q 
Sbjct: 379 ---KGGGSPSKYQG 389


>gi|148270155|ref|YP_001244615.1| threonyl/alanyl tRNA synthetase, SAD [Thermotoga petrophila RKU-1]
 gi|147735699|gb|ABQ47039.1| Threonyl/alanyl tRNA synthetase, SAD [Thermotoga petrophila RKU-1]
          Length = 373

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 126/327 (38%), Gaps = 23/327 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           E      K+  +   +PFY +  GGQLGD G      +   +   +K    +      +E
Sbjct: 10  EVVRDRDKIIAISRTSPFYPDGKGGQLGDRGKIGPANV---LKVKEKDGYILHYLDTHLE 66

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G           ID   RR ++  H+A H+L  A   +    +      +       D+
Sbjct: 67  PGEY------EYKIDLVRRRDIACQHTAQHILSAAFLKVA--DLETVSFLMGERVSTIDL 118

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +    L+  ED  N+++     V    + +E+A       L       +VRVV +
Sbjct: 119 NAP-FVLEDVLEEAEDLANEVVRSCERVEILEIEKEEAEKMNLRKL--PNVEGKVRVVKI 175

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
              D        CGG HV +TGEI L+ IV    ++  + RI  + G RA      +D+ 
Sbjct: 176 GDFD-----VTACGGFHVENTGEIGLIKIVDTEKVKKVLTRIYFVAGDRALKDYREKDKL 230

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHI 800
           LKSL+  L  S   ++ R E + EE ++      K   +         +   +  +  + 
Sbjct: 231 LKSLSRVLTTSTKELLKRAENLLEEVKEKSAKLDKLSEKYAEILSKVAEPEKIGKYYLYH 290

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIML 827
            S    +E+K +   L  + +  I++L
Sbjct: 291 FSGT-PEEMKYLPKFLADR-KDTIVLL 315


>gi|226356287|ref|YP_002786027.1| alanine--tRNA ligase [Deinococcus deserti VCD115]
 gi|226318277|gb|ACO46273.1| putative Alanine--tRNA ligase (Alanyl-tRNA synthetase) [Deinococcus
           deserti VCD115]
          Length = 412

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 122/358 (34%), Gaps = 16/358 (4%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                +  Q  E+  D T FY E GGQ  DTG     G   ++T  +K      + HA+ 
Sbjct: 19  FAATVLDVQAQEIALDATAFYPEGGGQNTDTGRVRWTGSEARMTAARKDKSTGVIWHALA 78

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                     +   +D   R + +  HS  HLL  A + I         S  +P     +
Sbjct: 79  GDLPP-PGTRITGEVDQDVRWRHAQRHSGEHLLAQAFARINPVFQVAAVSMRSP-----E 132

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-NDRVRVV 679
            T       AE                  +            G  +L        +VR+V
Sbjct: 133 CTLDLRGDPAESHVRAAEALLRETLGRRDLELHTPIVPEDQLGTYSLRRETKVRGQVRLV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
             +   G     + CGGTHV        + I+     +AG+ R+  + G+ A  +L G  
Sbjct: 193 IFQEPGGAPFDVSACGGTHVPRASLAAPVVILRTERQKAGLTRVVFMAGEEATRYLSGVY 252

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
              ++LA    V    +  RV  +  E   L+      + +L    L    +  V  +  
Sbjct: 253 HSARTLAQGFSVPVDGLADRVAALAGERDALRAAMETLREKLAAALLEAQPLQTVGGVPL 312

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
              ++D  EL  +   L  ++  G +++V  +  +       V    +   +A +L R
Sbjct: 313 REIQLDDPEL--LAPLLM-RVPQGTVVVVLTAGGR-----CGVG-SAVRNIHAGELLR 361


>gi|229917979|ref|YP_002886625.1| Threonyl/alanyl tRNA synthetase SAD [Exiguobacterium sp. AT1b]
 gi|229469408|gb|ACQ71180.1| Threonyl/alanyl tRNA synthetase SAD [Exiguobacterium sp. AT1b]
          Length = 386

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 152/394 (38%), Gaps = 28/394 (7%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G       + +PFYAE GGQ  D G        L + DVQ K   ++   +      L
Sbjct: 15  EDGNGHWHTLENSPFYAEGGGQPADRGWI----GTLPVLDVQIKDGEVWHLLSE----SL 66

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
            T  ++ + ID   RR  SI H+A H++   L    G      G   T   +  +     
Sbjct: 67  PTGKAVEVRIDEDVRRDHSIQHTAQHVITAILEDRHGIRTLSFGIGETDSSIEIETATM- 125

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
               A ++++E  +  +I +N P+    + +E+   +             +R+V +E  D
Sbjct: 126 --DWAHVEALEQEMQQLIFENRPIRVYEIPKEEVDRARLRKETDR--TGMIRIVEIEGLD 181

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   CGGTHV +TG++  +++ +   +R G  R+  + G RA          L+++
Sbjct: 182 YN-----ACGGTHVETTGQLGTIHVTAMKKVR-GNLRLTYVAGNRAIKATQQARAALRTI 235

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISEV 804
                 +  +V  RV  I E   +L+     + L+  +       +  + N+++  +   
Sbjct: 236 HHTFSTTNESVAARV--IEEHTIRLEREKEIKTLEERIAKAKVEAVLKEDNYVALHVGRT 293

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           +++ L + +           I +      +K  V+     D           + + + + 
Sbjct: 294 EAETLTTAIIERIAATGR--IAVGANYGTQKLFVM----HDGTQDIAVGTFLKAALQEMQ 347

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            G GGG    AQ+   +  + ++ I  +   L++
Sbjct: 348 IGRGGGNHKQAQARFTSVAELEKGIEEIVKRLQE 381


>gi|296201512|ref|XP_002806858.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA editing protein
           Aarsd1-like [Callithrix jacchus]
          Length = 608

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 142/394 (36%), Gaps = 37/394 (9%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VV + T  + E GGQ  D G      +       ++             +  L     
Sbjct: 237 FQVVLEDTLLFPEGGGQPDDHGTINDIPVLKVTRRGEQAD--------HFTQTPLEPGSQ 288

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +++ +D++ R      HS  HL+      +     +             ++     +T+ 
Sbjct: 289 VLVQVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWEL--GRFRSVIELDSPS-VTAE 345

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN+ I   LPV  + ++ +D          L   +   +RVV+++  D    
Sbjct: 346 QVAAIEQSVNEKIRDRLPVNVQELSLDDPEVEQVRGRGLPDDHAGPIRVVTIKGVDSN-- 403

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ ++     +     +  + G R    +       K+L + L
Sbjct: 404 ---MCCGTHVSNLSDLQVIKMLGTEKGKKNKTNLIFLAGNRVLKWMGRSHGTEKALTALL 460

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL----SCHKIADVNFMSHIISEVD 805
           K    + V  V+++    + LQ  +      L V       +      V  +        
Sbjct: 461 KCGAEDHVEAVKKLQNSTKLLQKNNLSLLRDLAVHSAHRLRNSPDWGGVVLLHRX----- 515

Query: 806 SKELKSVMDA-LQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKV 862
             E++S     +  +I S   +L     ++K +   L+      ++      L    A+V
Sbjct: 516 --EIRSXXXXIIANEIGSEETLLFLTVGDEKGAGLFLLAGPPVAVE-----TLGPRVAEV 568

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           L G G G +    Q      ++  +A A +  ++
Sbjct: 569 LEGKGAGKKGRF-QGKAMKMSRRPEAQALLQDYI 601


>gi|157124803|ref|XP_001660531.1| alanyl-tRNA synthetase [Aedes aegypti]
 gi|108873862|gb|EAT38087.1| alanyl-tRNA synthetase [Aedes aegypti]
          Length = 399

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 125/367 (34%), Gaps = 28/367 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +V F+ T  + E GGQ  D G   G  +R  I         +            +    
Sbjct: 29  FQVTFEDTVLFPEGGGQPSDHGWLNGTEVRNVIRKGATAVHFLDGEEV-----PFQVGEE 83

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID+  R      HS  HL+        G              +  D    K +T  
Sbjct: 84  VHQKIDWDRRFDHMQQHSGQHLITAIFDREFGYSTKSWWLGSEDSFVDLDT---KDVTKE 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL---LGTKYNDRVRVVSVEYEDGG 687
           +L  +E   N +I    PV  ++   +D      A     L    +  +RVV+++  +  
Sbjct: 141 QLVKVETICNQLIVDCTPVDVKVYQPDDPALKSEATRTRGLPEDVSGPLRVVTIDGIESN 200

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                +C GTHV +  ++  +  ++      G   +  + G R    L    E+     +
Sbjct: 201 -----MCCGTHVKNLAQLQAIKFLNVE-KSKGKCLVHFLVGNRVLKKLGDCYEREIQFNT 254

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEV 804
            L     + V  ++++    +  Q +  K   +L + +++     +     F  H +  +
Sbjct: 255 LLNGGPLSHVDLIKKMLTTIKNSQKVCKKFTNELALVEVAKVNALNPKPRFFSVHRLDGM 314

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           DS  + + +  +   +      L    + +K  +++    D + +    D      K L 
Sbjct: 315 DSDFIGTFLRNV--NMSECFFFLTNGDETRKGQMVLQGKPDDIAKI--GD---AICKAL- 366

Query: 865 GGGGGGR 871
            G G G+
Sbjct: 367 DGKGSGK 373


>gi|326518808|dbj|BAJ92565.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 305

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 117/299 (39%), Gaps = 42/299 (14%)

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDG 686
           VN  I   L V  + +   DA   +G  A+ G  Y D VRVVS+             ++ 
Sbjct: 1   VNKQIKDELEVSAQEIKLADAKRINGLRAVFGEIYPDPVRVVSIGCKVEDLLANPESKEW 60

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLK 743
              S+ LCGGTH+S+T +     ++SE  I  G+RRI A+T +   +A       D  + 
Sbjct: 61  LSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECASQAMKLASSIDTDIN 120

Query: 744 SLASFLKVSQG---------------------NVVGRVEEIWEEYRKLQL----IHAKRK 778
             +     +                       ++ G + ++ ++ RK +      + ++ 
Sbjct: 121 EASKLDGATLEKKIGSIKNTLDAAAIPAARKADLRGNISKLEDQLRKAKKKMGEENIQKA 180

Query: 779 LQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK-EKKA 836
           ++  ++           F    +   +D+  ++  +     + +S  IM+    +   KA
Sbjct: 181 VKTVIDAAEATLSEGKPFCVAHVDVGLDTTAVREAVVKAMNRFKSLPIMVFSTDEASNKA 240

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            +   V  D  + F  +D    S   L G GGGG+  +AQ  G + ++  +A+      
Sbjct: 241 VIYAGVPPDAPNGFKVLDWLTPSIAPLKGRGGGGKNGLAQGQGSDASRVKEAMELATQI 299


>gi|281412503|ref|YP_003346582.1| Threonyl/alanyl tRNA synthetase SAD [Thermotoga naphthophila
           RKU-10]
 gi|281373606|gb|ADA67168.1| Threonyl/alanyl tRNA synthetase SAD [Thermotoga naphthophila
           RKU-10]
          Length = 373

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 139/372 (37%), Gaps = 33/372 (8%)

Query: 503 EEAVSGQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           E      K+  +   +PFY +  GGQLGD G      +   +   +K    +      +E
Sbjct: 10  EVVRDRDKIIAISRTSPFYPDGKGGQLGDRGKIGPANV---LKVKEKDGYILHYLDTHLE 66

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G           ID   RR ++  H+A H+L  A   +    +      +       D+
Sbjct: 67  PGEY------EYKIDLVRRRDIACQHTAQHILSAAFLKVA--DLETVSFHMGERVSTIDL 118

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +    L+  ED  N+++     V    + +E+A       L       +VRVV +
Sbjct: 119 NAP-FVLEDVLEEAEDLANEVVRSCERVEILEIEKEEAEKMNLRKL--PNVEGKVRVVKI 175

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
              D        CGG HV +TGEI L+ IV+   ++  + RI  + G RA      +D+ 
Sbjct: 176 GDFD-----VTACGGFHVENTGEIGLIKIVNAEKVKKVLTRIYFVAGDRALKDYREKDKL 230

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHI 800
           LKSL+  L  S   ++ R E + EE ++      K   +         +   +  +  + 
Sbjct: 231 LKSLSRVLTTSTKELLKRAENLLEEVKEKSAKLDKLSEKYAEILSKVAEPEKIGKYYLYH 290

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            S    +E+K +   L  + +  I++L       +  ++        +  +   +     
Sbjct: 291 FSGT-PEEMKYLPKFLADR-KDTIVLL---EHPDRVEIV-------SNWIDCRKIFEKLK 338

Query: 861 KVLGGGGGGGRP 872
           + L   GG G+ 
Sbjct: 339 EQLNIEGGSGQK 350


>gi|15824732|gb|AAL09461.1|AF332359_1 alanyl-tRNA synthase [Fibrobacter succinogenes subsp.
          succinogenes S85]
 gi|15822558|gb|AAK13021.1| alanyl-tRNA synthase [Fibrobacter succinogenes subsp.
          succinogenes S85]
          Length = 57

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 36/57 (63%)

Query: 38 FTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG 94
          FTN+GM  FK IF G    V       QKC+R  GKHNDLD VGR N HHTFFEM G
Sbjct: 1  FTNAGMNQFKAIFLGDNPKVGSRACNSQKCLRVSGKHNDLDVVGRDNYHHTFFEMKG 57


>gi|46200150|ref|YP_005817.1| alanyl-tRNA synthetase related protein [Thermus thermophilus HB27]
 gi|46197778|gb|AAS82190.1| alanyl-tRNA synthetase related protein [Thermus thermophilus HB27]
          Length = 392

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 146/401 (36%), Gaps = 44/401 (10%)

Query: 500 EIVEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
             VE   S +K    V  QT FY E+GGQ  D G   G    +Q+    ++ +  F    
Sbjct: 32  ARVERVWSDEKGHYAVLSQTLFYPESGGQPADRGVLRGPFGEVQVLHAYEEEK-AFGDVV 90

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            V    +   + +   ID+  R +    H+A HLL  AL    G H       ++ D   
Sbjct: 91  HVLSAPIPEGVEVEGEIDWPRRFRHMQRHTAQHLLSQALLRAGGYHTVA----VSLDSPV 146

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
             V   +    A +   E   N  +  + PV    ++ E+            K   +VR+
Sbjct: 147 CTVDLEEEAEEAGVLEAEALANFAVYADYPVEAFYVSEEELARYPLRRP--PKVRGKVRL 204

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +   D      A CGGTH+ ++ +   + ++     + G  R+  + G  A      +
Sbjct: 205 VRIGDFD-----LAACGGTHLKTSAQAGPIKVLKWERYKGGT-RVYFMAGWEALEDYHAK 258

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
              L  LA     +   +   + ++ +E   L+  +   +  L  E L    + +   + 
Sbjct: 259 HALLARLALAFSTNPLELEKPIRKLQDELYALKGENQALREGLA-EALLPRALEEKALL- 316

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE---DLLDRFNAVDL 855
                V    L  +   L  + +   +++     E +    + V     ++L+R  A   
Sbjct: 317 -----VPLPVLGELGKRL-ARFEGTFLLVA---PEGR---FVAVGPRRGEVLERLKA--- 361

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                    GG GGG+  + Q   P   +A +A+A V   L
Sbjct: 362 --------LGGRGGGKEAV-QGALP-PGRAVEALARVRELL 392


>gi|55980115|ref|YP_143412.1| alanyl-tRNA synthetase-like protein [Thermus thermophilus HB8]
 gi|55771528|dbj|BAD69969.1| alanyl-tRNA synthetase-related protein [Thermus thermophilus HB8]
          Length = 375

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 146/401 (36%), Gaps = 44/401 (10%)

Query: 500 EIVEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
             VE   S +K    V  QT FY E+GGQ  D G   G    +Q+    ++ +  F    
Sbjct: 15  ARVERVWSDEKGHYAVLSQTLFYPESGGQPADRGVLRGPFGEVQVLHAYEEEK-AFGDVV 73

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            V    +   + +   ID+  R +    H+A HLL  AL    G H       ++ D   
Sbjct: 74  HVLSAPIPEGVEVEGEIDWPRRFRHMQRHTAQHLLSQALLRAGGYHTVA----VSLDSPV 129

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
             V   +    A +   E   N  +  + PV    ++ E+            K   +VR+
Sbjct: 130 CTVDLEEEAEEAGVLEAEALANFAVYADYPVEAFYVSEEELARYPLRRP--PKVRGKVRL 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +   D      A CGGTH+ ++ +   + ++     + G  R+  + G  A      +
Sbjct: 188 VRIGDFD-----LAACGGTHLKTSAQAGPIKVLKWERYKGGT-RVYFMAGWEALEDYHAK 241

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
              L  LA     +   +   + ++ +E   L+  +   +  L  E L    + +   + 
Sbjct: 242 HALLARLALAFSTNPLELEKPIRKLQDELYALKGENQALREGLA-EALLPRALEEKALL- 299

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE---DLLDRFNAVDL 855
                V    L  +   L  + +   +++     E +    + V     ++L+R  A   
Sbjct: 300 -----VPLPVLGELGKRL-ARFEGTFLLVA---PEGR---FVAVGPRRGEVLERLKA--- 344

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                    GG GGG+  + Q   P   +A +A+A V   L
Sbjct: 345 --------LGGRGGGKEAV-QGALP-PGRAVEALARVRELL 375


>gi|4928220|gb|AAD33470.1|AF130452_1 alanyl-tRNA synthetase [Flavobacterium hydatis]
          Length = 57

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 31/53 (58%)

Query: 38 FTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFF 90
          FTN+GM  FK  F G   P    +   QKC+R  GKHNDL+ VG    HHTFF
Sbjct: 1  FTNAGMAQFKEYFLGNGTPKSPRIADTQKCLRVSGKHNDLEEVGIDTYHHTFF 53


>gi|57525832|ref|NP_001003572.1| alanyl-tRNA editing protein Aarsd1 [Danio rerio]
 gi|82182671|sp|Q6DEJ5|AASD1_DANRE RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein 1
 gi|50417382|gb|AAH77118.1| Alanyl-tRNA synthetase domain containing 1 [Danio rerio]
          Length = 412

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 135/391 (34%), Gaps = 35/391 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V    T  + E GGQ  D G   G  +   +         +                 + 
Sbjct: 42  VKLKDTILFPEGGGQPDDHGTIGGVPVLRVLRQGPDAVHFVSSAL--------EEGQEVH 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + +D++ R      HS  HL+     T+ G   +          +  D    K     E+
Sbjct: 94  IKLDWERRFDHMQQHSGQHLITALADTMFGYKTTSWDLGRQRSSIELDTATVK---PGEM 150

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSS 691
           +++E  VN+ I  ++PV   +++ +D       +  L   +   +R++ +E  D      
Sbjct: 151 EALETAVNEKIRAHVPVTVNLLSIDDPAVEKVRSRGLPDDHAGPIRIIDIEGVDAN---- 206

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            +C GTHVS+   + ++ I+     +     +  I G R   +        KSL   LK 
Sbjct: 207 -MCCGTHVSNLSHLQVIKILGTEKGKKNKTNLIFIAGNRVLKYAEKSYNIEKSLTVLLKT 265

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
                V  V+++ +  ++LQ  +     ++ V      K          +   D      
Sbjct: 266 GADEHVDAVDKLQKTVKRLQKSNLTILREMAVLIAQNFKSKPDRGHFFSLHNKDGDN--E 323

Query: 812 VMDALQKKIQ-SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK---VLGGGG 867
            M+ +  +I     ++ + +  EK A + ++   +        ++          L  G 
Sbjct: 324 FMNIVANEIGFQDTLIFMTVGDEKGAGLFLIAGPE--------NIVTEVGPRVSELLQGK 375

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G G+    Q  G   +   +A   V + LK+
Sbjct: 376 GAGKAGRYQ--GKANSLVKRA--EVEALLKE 402


>gi|228934894|ref|ZP_04097725.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824794|gb|EEM70595.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 333

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 111/311 (35%), Gaps = 25/311 (8%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               + V+ ++T FY   GGQ  DTG   G  +                           
Sbjct: 37  KDGNLYVILNETVFYPTGGGQPHDTGTLNGIAV---------LGVEEVDEEIRHFIAEQL 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I+++ R      H+A H+L  A                    +  +  +   
Sbjct: 88  HTEEVEGKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTIDLETENLHA 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T   ++      N I+ +N P++ + MN E+A              + +RVV +E  D 
Sbjct: 148 ET---VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRKE--PTMTENIRVVMIENFDY 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 203 N-----GCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII 801
             L  S+ ++  +V ++    ++ +        +L   + +       KI     +S + 
Sbjct: 257 KQLNSSESDIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 316

Query: 802 SEVDSKELKSV 812
           +    +E+  +
Sbjct: 317 TNRSMQEIAKL 327


>gi|317419211|emb|CBN81248.1| Alanyl-tRNA synthetase domain-containing protein 1 [Dicentrarchus
           labrax]
          Length = 525

 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 76/463 (16%), Positives = 167/463 (36%), Gaps = 40/463 (8%)

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKVLCQKPPIDLT 485
            R  A    +         +  +E  G  +F  Y D+++      +            +T
Sbjct: 70  QRDEAKPSWIAVDFDNWRDWEHEEDEGQDEFYRYADMIQEMTTSNKGAAPDMGDLSDFVT 129

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           + VS     + Q+    +E V G    V    T  + E GGQ  D G        + +  
Sbjct: 130 SVVSCCPAELKQEVNGKKETVKG--FNVKLQDTILFPEGGGQPDDHGLI----GDVPVLR 183

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           V ++        +      L     + + +D++ R      HS  HL+     +  G   
Sbjct: 184 VTRQGTEAIHFVSS----PLEEGQEVQVKVDWERRFDHMQQHSGQHLITALADSFFGYKT 239

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +             ++     +  A+L+++E+ +N+ I  ++PV  ++++ +D       
Sbjct: 240 TSWEL--GHQRSTIELDTPS-VKPAQLQALEEAINENIRAHVPVTVQLLSIDDPAVEKVR 296

Query: 666 AL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +  L   +   +R++ +E  D       +C GTHVS+   + ++ ++     +     + 
Sbjct: 297 SRGLPEDHAGPIRIIDIEGIDAN-----MCCGTHVSNLSHLQVIKLLGTEKGKKNKTNLI 351

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            + G R   +        +SL S LK      V  V+++ +  + LQ  +      + V 
Sbjct: 352 FLAGNRVLKYAEKSYSTERSLVSLLKTGPDVHVEAVDKLQKSVKLLQKTNLSLLRDMAV- 410

Query: 785 DLSCHKIAD----VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
            L      +     NF S    E D++ +  +++ +    +  ++ L    ++     ++
Sbjct: 411 -LIAQNFKNDPQRGNFFSLHKKEGDNEFMNIIVNEI--NTEETLVFLTVGEEKGPGCFVL 467

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGG------GRPH-MAQ 876
                 + +     L     ++L G G G      G+ + +AQ
Sbjct: 468 AGPRGPVAK-----LGPRVLEILQGKGAGKNGRFQGKANSLAQ 505


>gi|241950131|ref|XP_002417788.1| alanyl-tRNA synthetase-related protein, putative [Candida
           dubliniensis CD36]
 gi|223641126|emb|CAX45502.1| alanyl-tRNA synthetase-related protein, putative [Candida
           dubliniensis CD36]
          Length = 449

 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 142/408 (34%), Gaps = 46/408 (11%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  V  + T  + E GGQ  D G          I       + +   H + E  ++    
Sbjct: 63  EFGVELEDTILFPEGGGQPYDKGTITILPDNKIIEVKSVLRDKLKAVHLVNE--LIEPGT 120

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            + L ID+  R  +   H+  HLL        L +     G  I        +     IT
Sbjct: 121 QVSLNIDWNRRIDIMQQHTGQHLLSAVFDTYELETLSWSMGEDINY------IELPTKIT 174

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
              +  +++ VN +I + +P+     ++    I               +R+V +   D  
Sbjct: 175 QELIIEVQNKVNQLIVEAIPITVVTPDQHGHEIDVSHLPDDYDLSKGIIRIVKIGELDAN 234

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA- 746
                 C GTH++ST +I  + ++ +S IR G  R+    G R  ++L  + E L++++ 
Sbjct: 235 -----PCCGTHLTSTAQIQSIVLLHQSPIRGGHSRLYFTCGGRVANYLRKEHEILRNVST 289

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-----ADVNFMSHII 801
           + L  +   V  +VE +   Y+K          +L    +  +KI      D N     +
Sbjct: 290 NQLSCAIEVVEEKVELLSLNYKKANSTLNNLLKELA--SIEANKIFQKFKNDHNNKLAYV 347

Query: 802 SEVD--------SKELKSVMDALQK-----KIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
              D         KEL ++++  +           +++L G +               + 
Sbjct: 348 YRADLPEYLTSVQKELTTLINEDKTGDVDISNNQTLVLLSGAAPNGGTI--------KIS 399

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
              A +L       L    GGG+    Q       K +  +  V  +L
Sbjct: 400 GPKAEELQVELKSKLSNLKGGGKGSSFQGKITKFEKGE--LEAVLKYL 445


>gi|320335199|ref|YP_004171910.1| Alanyl-tRNA synthetase, class IIc [Deinococcus maricopensis DSM
           21211]
 gi|319756488|gb|ADV68245.1| Alanyl-tRNA synthetase, class IIc [Deinococcus maricopensis DSM
           21211]
          Length = 394

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 74/392 (18%), Positives = 144/392 (36%), Gaps = 31/392 (7%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
              V  D T FY E GGQ  D G     G  +++ DVQ++A  ++               
Sbjct: 25  DGAVALDGTCFYPEGGGQNADAGTLAWAGGEVRVVDVQREAGVVWHRVDGPAPA---VGE 81

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +++  ++   R +    HS  HLL  A   I   H     + ++       +      T 
Sbjct: 82  AVMGRVEAGRRWRHMERHSGEHLLAQAFVRI---HPRLRVAAVSMRSAECTLDLEGDPTE 138

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           AE+++ E  + ++I ++L + T  +   +  +         +    VR+V    E G + 
Sbjct: 139 AEVRAAEALLREVIRRDLRLETVTVPESELGSYPLRRP--PQVRGDVRLVMFRDEAGELF 196

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
             + CGGTHV     +  + ++    +R G+ R+  + G+ A+++L G     ++LA   
Sbjct: 197 DVSACGGTHVPRAAVVAPVVVLRTERVRGGLTRVVFMAGEEAQAYLGGVYRDARALAGTF 256

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSCHKIADVNFMSHIISEVDS 806
                 +  RVE +  E   L     + + QL       ++   +         + +   
Sbjct: 257 STGVEGLSERVEALRAERDALSAELKQARTQLAAALTLQVTPESLNGAPVRFVALPDA-- 314

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS--AKVLG 864
              + + D L+      +++      + +  V             A    +++  A    
Sbjct: 315 ---RLLPDVLEATPAQEVVVAFA--PDGRVGV-----GSARADVQAGQALKVALGASGGR 364

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGG   RP  AQ   P+    D  +    + L
Sbjct: 365 GGG---RPDRAQGQTPD---VDAFLRAARTHL 390


>gi|115929936|ref|XP_001192813.1| PREDICTED: similar to Mgc2744-prov protein [Strongylocentrotus
           purpuratus]
 gi|115943037|ref|XP_787006.2| PREDICTED: similar to Mgc2744-prov protein [Strongylocentrotus
           purpuratus]
          Length = 411

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 141/391 (36%), Gaps = 33/391 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E++ + T  + E GGQ  D G        +++  + +K               L     
Sbjct: 40  FELILEDTVLFPEGGGQPDDRGTINN----VEVLRITRKGADAIHFVTS----SLEPGSE 91

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +D++ R      HS  HL+        G   +          +  D      I+  
Sbjct: 92  VTQKVDWKRRFDHMQQHSGQHLVTAIADNKHGWKTTSWDLGREKSFIELDTP---KISQE 148

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           +L+ +E + ND I + +P+  R++              L   +   VR+V +E  +    
Sbjct: 149 QLEELEKDTNDAIRKCIPMTPRLVELGSKELQEVRTRGLPDDHVGLVRIVEIEGIEAN-- 206

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              LC GTHVS+   +  + ++     + G   +  + G R  S+L       K+L   L
Sbjct: 207 ---LCCGTHVSNLSHLQAIKLLGAEKGKKGKTNLYFLAGNRVLSYLGKCYNNEKALNLSL 263

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN--FMSHIISEVDSK 807
           K      V +V++I +  +           +L V +   +K+       +S    E DS+
Sbjct: 264 KCGPDEHVQQVDKIQKSLKTANKTSLTVLRELAVLEARHYKLNPNRDPLLSIHRKEGDSE 323

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASV-LIVVTEDLLDRFNAVDLARLSAKVLGGG 866
            +  V + +        +ML+   +E  A + L+    D+++   A       A +L G 
Sbjct: 324 YMIIVANEV---GPENALMLLSTGEENGAGLFLVAGPTDIVEE--AGP---RVASLLEGK 375

Query: 867 GG--GGRPHMAQSGGPNGNKADQAIAGVASF 895
           G    GR    Q      +K  +A   +  F
Sbjct: 376 GACKNGR---YQGKATKLSKRSEAEKLLRDF 403


>gi|299139528|ref|ZP_07032702.1| Alanyl-tRNA synthetase, class IIc-like protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298598456|gb|EFI54620.1| Alanyl-tRNA synthetase, class IIc-like protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 423

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 74/361 (20%), Positives = 127/361 (35%), Gaps = 19/361 (5%)

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGC--AIGDGIRLQITD 545
           ++ V  I        EA   Q++  V  D+T FY E GGQ  DTG   A+          
Sbjct: 19  TATVADIRLDSHEKNEAGEKQQLWQVALDRTAFYPEGGGQPWDTGVLVAVSRSGATLEVA 78

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           V++  E          R  L     +   +D   R      HS  HLL  A   +     
Sbjct: 79  VERVEEDEAGEVWHYVRKPLVEGTEITGRVDAARRMDHVQQHSGQHLLSAAF--LSELEA 136

Query: 606 SQNGSCITPDGLRFDV---THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
                 +  +    D+     S+ ++  EL+ +E   N ++  +  +  R ++R +A   
Sbjct: 137 KTVSFHLGAETSSIDLVLREGSERLSEDELQRVETAANRLVFADRVLTPRWVSRGEAEEM 196

Query: 663 GAAALLGTKYNDR--VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                L         +R+V ++  +        CGGTHV+STG I  + +     +R G 
Sbjct: 197 YERGDLRKLPEREGPMRIVEMQGVEFN-----ACGGTHVASTGAIGGVMLRRVEKVRQG- 250

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E + G RA          L  +A  L V  G+V GRV  + E+ +           +
Sbjct: 251 WRVEFVCGLRAVQAARKDFGLLAEVAGSLSVGAGDVPGRVASLLEDAKAAAKERRGLIEE 310

Query: 781 LNVEDLSCHKIADVNF--MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           L   +        V    +  +    + +  K V   +        ++      E   ++
Sbjct: 311 LARAEAVALVAEAVEGSAVRAVFVGKEMEFAKQVAAKVAG-FGRMAVVGATNGPEGSIAM 369

Query: 839 L 839
            
Sbjct: 370 A 370


>gi|282857461|ref|ZP_06266694.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282584746|gb|EFB90081.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 391

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 141/391 (36%), Gaps = 41/391 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            EV   QT FY E GGQL D+G          ++D ++K   I           L     
Sbjct: 31  FEVTLSQTAFYPEGGGQLADSGVI----GDAAVSDTRRKDGAIVH----YADKPLPVGSV 82

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
               ID+Q R      HS  H++   +           G  +  D +  D     PI   
Sbjct: 83  QHGAIDWQKRFDHMQAHSGEHIVSGLVHRR--WGYDNVGFHMAADKVTVDFN--GPIGEE 138

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  +E + N  I  NLPV     + E+  A    +    + +  VR+V     D     
Sbjct: 139 QLAELERDANAAIYANLPVRVAFPSPEELAALDYRSK--KELSGAVRLVEFPGVD----- 191

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C GTHV  +GEI L+  ++ +  + G+ RIE + G+ A      ++E+ + +     
Sbjct: 192 LCACCGTHVERSGEIGLIKFIAMARYKGGV-RIEMLCGRLAMQDYARKNEQEREIGRIFS 250

Query: 751 VSQGNVVGRVEE---IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
                 V  V +     E         A+R  +L               +          
Sbjct: 251 AKPYETVEAVRQHVAAAEAAEARASELARRYFELRTAQFPA----GDGLLIDFEEGFKPA 306

Query: 808 ELKSVMDALQK--KIQSGIIMLVGISKEKKA-SVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           EL+   DAL    K ++  ++    S  +K  + +I   E +L      +  +   K L 
Sbjct: 307 ELRKFCDALVSGGKAKTAAVLSPAESNGRKGWNYVICAREPVL-----REAVKTLNKEL- 360

Query: 865 GGGGGGRPHMAQS---GGPNGNKADQAIAGV 892
           GG GGG P + Q     G      ++A+  +
Sbjct: 361 GGRGGGDPTLVQGTFFAGR--ADIERALEAI 389


>gi|242012761|ref|XP_002427096.1| alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212511354|gb|EEB14358.1| alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 361

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 118/345 (34%), Gaps = 23/345 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            EV+ + +  + E GGQ  DTG      +   +         +           +     
Sbjct: 32  YEVICEDSILFPEGGGQPWDTGFVNDIPVSQVLRKGDSAVIYL--------PKPVTVGGE 83

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   I+++ R      HS  HL+   ++       +          +  D    K +T+ 
Sbjct: 84  VKQVINWERRFDHMQQHSGQHLITAIINEEYKIDTTSWWLGEELSHIELDT---KQLTNE 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE+  N  I + +PV  ++  +       A    L       +R+V +   +    
Sbjct: 141 QITNIENLANQKIIEQIPVTVKLYEKNSKEVENARTRGLPDDVTGPIRIVEIVGLE---- 196

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            S LC GTHV++ G++  + ++     +     +  ++G R   +L    E  + L   L
Sbjct: 197 -SDLCCGTHVNNLGQLQSIKLLYAEKGKKNKTNLFFLSGTRVLKYLSKCLETEQKLTKLL 255

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK 807
           K    +    + ++ +  +           +  VE+     +      + +H  ++ +S 
Sbjct: 256 KCDPSSYADIISKLQQNLKLTNKKLDNLFKEKAVEEAEKLKYLKPKPKYYTHYKNDANSD 315

Query: 808 ELKSVMDALQKK--IQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
            +      L+    +     ML          +LI   ED +   
Sbjct: 316 YVDCFWRTLRDNELLNETFFMLAAGETNG--YLLINGNEDDIKTL 358


>gi|313680957|ref|YP_004058696.1| threonyl/alanyl tRNA synthetase sad [Oceanithermus profundus DSM
           14977]
 gi|313153672|gb|ADR37523.1| Threonyl/alanyl tRNA synthetase SAD [Oceanithermus profundus DSM
           14977]
          Length = 397

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 92/262 (35%), Gaps = 12/262 (4%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G +  V  D+T FY  +GGQ  DTG   G  +       +     + V  A      L
Sbjct: 24  EEGGRFLVELDRTLFYPTSGGQPHDTGTLGGVRVLDVFEPEKHGQRIVHVLEA-----PL 78

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               ++   ID+  R +    H+  H+L  A       +            + FDV    
Sbjct: 79  EEGAAVEGKIDWTRRYRHMQRHTGQHVLSQAFLRAAQWNTIAVSLAGPEIHIDFDVWPGP 138

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
                 L   E   N  +  NL V  R +                K    VRVV +E  D
Sbjct: 139 GAAEEVLAEAEALANWAVYANLAVSAREVPEAQVPLLPLRR--MPKVRGSVRVVQIEDWD 196

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                 A CGGTH+ ST E   + ++     +    R+ A TG  A      +   LK+L
Sbjct: 197 -----LAPCGGTHLRSTAEAGPIKLLGFEKGKKKTIRVYARTGWEALEDYAAKHRTLKAL 251

Query: 746 ASFLKVSQGNVVGRVEEIWEEY 767
           A        +V  RV+++ +E 
Sbjct: 252 AGRFSAGVFDVPERVQKLEDEL 273


>gi|330973620|gb|EGH73686.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 199

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 113/230 (49%), Gaps = 31/230 (13%)

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           ++ G+V FKLYDT+G P+D+  DI   R L  +D   F + ++ QR RAR+ S       
Sbjct: 1   MVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LDEAGFEREMDAQRVRARSASSFGM--- 56

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
               + SL +   ATQF GY    G                       S+ V A+ ++G+
Sbjct: 57  ---DYNSLVKVDVATQFTGYSATTG-----------------------SASVVALYKEGQ 90

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            V     G++  V+ D TPFYAE+GGQ+GD+G       R  ++D  K     F+HH +V
Sbjct: 91  SVSHLNEGEEGVVILDITPFYAESGGQIGDSGFLQAGDARFDVSDTTKTGG-AFLHHGVV 149

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             G L     +   +  + R    +NHSATHLLH AL  +LG HV Q GS
Sbjct: 150 ASGSLSVGAQVETQVADEVRDATKLNHSATHLLHAALRQVLGEHVQQKGS 199


>gi|258538953|ref|YP_003173452.1| phosphoesterase, DHHA1 [Lactobacillus rhamnosus Lc 705]
 gi|257150629|emb|CAR89601.1| Phosphoesterase, DHHA1 [Lactobacillus rhamnosus Lc 705]
          Length = 157

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 6/152 (3%)

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDS 806
              NV  +V ++  + +  Q   A  + +L  +  +        +     +   +     
Sbjct: 5   QVKNVPSKVTQLQADLKTEQKTVAGLQAKLAAQAAAGIFDHAETVGGFKLIDKQVQVAGM 64

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
            EL+ + D  + K  S I++L   +  K   ++            A DL +  A  +GGG
Sbjct: 65  NELRQLADEWKTKQASDILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVGGG 124

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G GGRP MAQ+GG        A+A   + + +
Sbjct: 125 G-GGRPDMAQAGGKKPAGIPAALAEAKNVIGQ 155


>gi|74212129|dbj|BAE40227.1| unnamed protein product [Mus musculus]
          Length = 412

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 138/389 (35%), Gaps = 27/389 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV + T  + E GGQ  D G      +        +                L     
Sbjct: 41  FHVVLEDTLLFPEGGGQPDDRGTINDISVLRVTRRGAQAD--------HFTESPLSPGSQ 92

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +             ++     +T+ 
Sbjct: 93  VQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSWEL--GRLRSVIELDSPS-VTAE 149

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN  I   LPV  R ++ +D          L   +   +RVV++E  D    
Sbjct: 150 QVAAIEQSVNQKIRDRLPVSVRELSMDDPEVEQVRGRGLPDDHAGPIRVVTIEGVDSN-- 207

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  + G R    +       K+L S L
Sbjct: 208 ---MCCGTHVSNLSDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHGSEKALTSLL 264

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K    + V  V+++    + LQ  +      L V      + +        +   +    
Sbjct: 265 KCGVEDHVEAVKKLQNATKLLQKNNLNLLRDLAVHTAHSLRSSPAWGGVVTLHRKEGDS- 323

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
              M+ +  +I S   +L     ++K +   L+    + ++      L    A+VL G G
Sbjct: 324 -EFMNIIANEIGSEETLLFLTVGDEKGAGLFLLAGPAEAVE-----TLGPRVAEVLEGKG 377

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G +    Q      ++  +A A +  ++
Sbjct: 378 AGKKGRF-QGKATKMSRRAEAQALLQDYV 405


>gi|114667072|ref|XP_001157692.1| PREDICTED: alanyl-tRNA synthetase domain containing 1 isoform 1
           [Pan troglodytes]
 gi|114667074|ref|XP_001157998.1| PREDICTED: alanyl-tRNA synthetase domain containing 1 isoform 2
           [Pan troglodytes]
 gi|114667076|ref|XP_511526.2| PREDICTED: alanyl-tRNA synthetase domain containing 1 isoform 4
           [Pan troglodytes]
 gi|114667078|ref|XP_001158111.1| PREDICTED: alanyl-tRNA synthetase domain containing 1 isoform 3
           [Pan troglodytes]
          Length = 527

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 67/391 (17%), Positives = 141/391 (36%), Gaps = 29/391 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VV + T  + E GGQ  D G      +       ++             +  L     
Sbjct: 154 FQVVLEDTVLFPEGGGQPDDRGTINDISVLRVTRRGEQAD--------HFTQTPLDPGSQ 205

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +++ +D++ R      HS  HL+      +     +             ++     +T+ 
Sbjct: 206 VLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWEL--GRFRSAIELDTPS-MTAE 262

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN+ I   LPV  R ++ +D      +   L   +   +RVVS+E  D    
Sbjct: 263 QVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVSIEGVDSN-- 320

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  + G R    +       K+L + L
Sbjct: 321 ---MCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLAGNRVLKWMERSHGTEKALTALL 377

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKR----KLQLNVEDLSCHKIADVNFMSHIISEVD 805
           K    + V  V+++    + LQ             L        ++     +    +  D
Sbjct: 378 KCGAEDHVEAVKKLQNSTKILQKAEVAVSRDCATALQQSLALSPRLEYSGVIMAHCNRTD 437

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           S+E   ++   +  +   ++ L    ++     L+      ++      L    A+VL G
Sbjct: 438 SQEAHVLV--WETNMCETLLFLTVGDEKGAGLFLLAGPPASVE-----TLGPRVAEVLEG 490

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G G +    Q      ++  +A A +  ++
Sbjct: 491 KGAGKKGRF-QGKATKMSRRMEAQALLQDYI 520


>gi|116249546|ref|YP_765384.1| hypothetical protein pRL90092 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254194|emb|CAK03804.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 246

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 86/273 (31%), Gaps = 62/273 (22%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  +K +F+  + P    V   Q C+R G    DLD +G    H   F MLG FSF    
Sbjct: 1   MQQYKPLFS--DPPHSGTVANSQACLRMG----DLDEIG-DGTHLLHFTMLGLFSF---- 49

Query: 103 KER-----AIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN 157
                   AI    + L     L     ++T++ +         + + L   ++  +   
Sbjct: 50  -REMTAGSAIDFWLEFL-GTLGLVPD--HVTIHPDRL------VEWTPLYRGRVPIVPDP 99

Query: 158 DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF 217
           +  WS       G C+E + D                   +EI N+V             
Sbjct: 100 ECMWSDGSI--SGYCTEFYKD------------------GVEIGNIV------NPLGT-- 131

Query: 218 ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVD 277
                 ID G GLER+  ++         D    L +    +    Y   N     V+  
Sbjct: 132 -----CIDVGFGLERLDMIVNGTPQV---DALGTLCETVMTIVESGYRPGNKEQGYVLRK 183

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
            LR    +      P         +R+  + + 
Sbjct: 184 LLRRIHKMGGTLDHPFFAEEVERQKRLRAKYLR 216


>gi|313233353|emb|CBY24467.1| unnamed protein product [Oikopleura dioica]
          Length = 544

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 61/397 (15%), Positives = 135/397 (34%), Gaps = 54/397 (13%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +  +++  +T F+ E GGQ GD G          +    ++ E             +   
Sbjct: 35  ECFKILLTETIFFPEGGGQPGDNGKITWGDDSSSVFYTVREGENAVHL----CDKQVPEG 90

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D+ +R      HS  HL+         +  + + +    D    +++    +T
Sbjct: 91  TEVSLEVDWDSRFDNMSQHSGQHLISAIFEQPEFNASTISWNL-GDDKSFIELSRP--VT 147

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E++ +E+  N+ I +   V   ++  ++ +  G    L   +   +RVV+++  D   
Sbjct: 148 DEEVQRVENMCNEAIRKRTRVSVELLTSKEDLRKGC-KDLPKDFAGPIRVVNIDGIDQN- 205

Query: 689 HSSALCGGTHVSSTGEIMLLYI-VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
               +C GTHV S  ++  + +   E     GI  +  + GQR    L       +    
Sbjct: 206 ----MCCGTHVESLSDLQAIKLLHQEKKKGKGI--VWFVCGQRVLKTLADSWNVSREACK 259

Query: 748 FLKVSQGNVVGRVEEIWEEY-------RKLQLIHAKRKLQLNVEDLSCHKIA-------- 792
            +   +  +  R+E +           + L         +         K          
Sbjct: 260 KMSCKEEEIPERIENLQVSNRGALKATKNLVSELGSTLAEALQTKFKIEKPESTVLPDCK 319

Query: 793 ---------------DVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKEKKA 836
                          D   +     ++  + L    D L + + + G I+ +   +E   
Sbjct: 320 KDNEQLKNSLRDITLDGKVLKLHRPDLGPEFLAPFADNLAQLVEKEGKIIFLSCGRENVG 379

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGG--GGGR 871
           ++ ++  E++     A    +   +++ G G   GGR
Sbjct: 380 NIYVIGDEEI---IKAS--GKQVLEIMDGKGFVKGGR 411


>gi|319644906|ref|ZP_07999139.1| hypothetical protein HMPREF1012_00172 [Bacillus sp. BT1B_CT2]
 gi|317392715|gb|EFV73509.1| hypothetical protein HMPREF1012_00172 [Bacillus sp. BT1B_CT2]
          Length = 193

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 70/180 (38%), Gaps = 9/180 (5%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRK 778
           R+  + G R  +    + + +  L   L   +G +   V+ + E  +KL        ++ 
Sbjct: 9   RLYFVCGNRVITQFDQKQKAIVELTGLLNRPEGELSEAVKRLLENVKKLDKALLESYEKN 68

Query: 779 LQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           LQ    +L        D   +    S+   +EL+ +   +  + +  +I  +    + + 
Sbjct: 69  LQYEANELLAKSAIQNDTVMVIETFSDRSIQELQKLAKMIADREKRALIFFLS-ENDHRF 127

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++    E   ++ N  DL + +  ++  G GGG    AQ GG      ++ +  V + +
Sbjct: 128 QLVCGRGEA--NKMNMRDLMQEALSLI-DGKGGGNKMFAQGGGTASFTKEKFMKNVMNII 184


>gi|328770064|gb|EGF80106.1| hypothetical protein BATDEDRAFT_36953 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 328

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 90/275 (32%), Gaps = 19/275 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            EVV   T  +   GGQ  D G   G  I          A  + +    +    +  +  
Sbjct: 53  FEVVLADTVIFPTGGGQPNDLGKINGIPIV--------DARRVGLDCVHILNNPVEKDQV 104

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D+  R      HSA HLL                           +  +      
Sbjct: 105 VQVDLDWDRRFDHMQQHSAQHLLSAIAQKEFDMKTVGWSL----GKAVCYIEVTAEPKQH 160

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L ++E  VN  I + + V     +  +        L        VR ++ +  D     
Sbjct: 161 VLDALEQQVNAYIRKRIAVSVVEHDMNEHDMP--KKLPSDLDGAVVRCITFDGLDNN--- 215

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C GTHV ++ +I    ++    +R G  R+  + G R          + + L   L 
Sbjct: 216 --TCCGTHVENSADIQCCKLLHTERVRGGNTRVFFVAGNRVFQSYQSTFLRNRKLTDLLS 273

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
               N V RVE + +  ++L   + K+  ++   +
Sbjct: 274 TGPENFVERVEGLKKNIKELIKTNKKQSKEIAALE 308


>gi|312214473|emb|CBX94464.1| similar to alanyl-tRNA synthetase domain-containing protein 1
           [Leptosphaeria maculans]
          Length = 450

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 132/378 (34%), Gaps = 23/378 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           G  V  + + +   + F  +  + E GGQ  D G                  +   +   
Sbjct: 60  GLTVGASNAPKVWHIEFADSVLFPEGGGQHTDHGTITPLNDDSDKEVSITNIQRHGLRCV 119

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 L+   ++  T+D+  R  L   H+  HLL   +    G ++   G  +   G  
Sbjct: 120 HFSPRPLKPGTTVRQTVDFGRRWDLMQQHTGQHLLSAIM---DGMNLETLGWSMGQPGEM 176

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
             V   +  T  E++ I+   N I+ +N+ +               ++ L   Y+    V
Sbjct: 177 NYVELPRKPTDEEIRIIQRTCNKIVRENVSITVETPEGR------GSSSLPEDYDSDKGV 230

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V       G      C GTH+ +T  I L+ +    ++R    R+    G RA       
Sbjct: 231 VRFVKI--GDLDYNACCGTHLRTTSHIGLILLHHMQTVRGTNCRLFFSAGDRAIELATES 288

Query: 739 DEKLKSLASFLKVS--QGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDLSCH-KIA 792
              L+S+A  L  S    +V   V+ +     E RK +        +     ++ H +  
Sbjct: 289 INGLRSIALSLSTSAAPNDVAIGVKRLGDSLSESRKKEKKMLAEISKFESARITTHFQKH 348

Query: 793 DVNFMSHIISEVDSKELKSVMDALQK-KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
              F+      +D   L  V+  ++    + G+ +L     +   S++I+   +L+   +
Sbjct: 349 QSAFLHRATDGLDFINL--VVMEIKDVASERGVAVLCSGEAKSSGSIVILGQPELVQNMS 406

Query: 852 AVDLARLSA-KVLGGGGG 868
           +    +       GGG G
Sbjct: 407 SK--VKEVVITAKGGGKG 422


>gi|21450213|ref|NP_659078.1| alanyl-tRNA editing protein Aarsd1 [Mus musculus]
 gi|125987703|sp|Q3THG9|AASD1_MOUSE RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA deacylase alaX; Short=AlaX;
           Short=AlaXp-II; AltName: Full=Alanyl-tRNA synthetase
           domain-containing protein 1
 gi|13543069|gb|AAH05711.1| Alanyl-tRNA synthetase domain containing 1 [Mus musculus]
 gi|122889672|emb|CAM14335.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
 gi|148702091|gb|EDL34038.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
          Length = 412

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 138/389 (35%), Gaps = 27/389 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV + T  + E GGQ  D G      +        +                L     
Sbjct: 41  FHVVLEDTLLFPEGGGQPDDRGTINDISVLRVTRRGAQAD--------HFTESPLSPGSQ 92

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +             ++     +T+ 
Sbjct: 93  VQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSWEL--GRLRSVIELDSPS-VTAE 149

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN  I   LPV  R ++ +D          L   +   +RVV++E  D    
Sbjct: 150 QVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIEGVDSN-- 207

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  + G R    +       K+L S L
Sbjct: 208 ---MCCGTHVSNLSDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHGSEKALTSLL 264

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K    + V  V+++    + LQ  +      L V      + +        +   +    
Sbjct: 265 KCGVEDHVEAVKKLQNATKLLQKNNLNLLRDLAVHTAHSLRSSPAWGGVVTLHRKEGDS- 323

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
              M+ +  +I S   +L     ++K +   L+    + ++      L    A+VL G G
Sbjct: 324 -EFMNIIANEIGSEETLLFLTVGDEKGAGLFLLAGPAEAVE-----TLGPRVAEVLEGKG 377

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G +    Q      ++  +A A +  ++
Sbjct: 378 AGKKGRF-QGKATKMSRRAEAQALLQDYV 405


>gi|167950022|ref|ZP_02537096.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 70

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             K +++  VT+DL  R  A DL +L A+ + GG GGGRP MAQ+GG + +   QA+A V
Sbjct: 2   GDKVALVSGVTKDLTGRMKAGDLVKLVAEKI-GGRGGGRPDMAQAGGNDPSALPQALALV 60

Query: 893 ASFLK 897
             +++
Sbjct: 61  PGWVE 65


>gi|47226041|emb|CAG04415.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 402

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 64/368 (17%), Positives = 129/368 (35%), Gaps = 27/368 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V    T  +   GG   D G        + +  V ++        +      L     + 
Sbjct: 42  VTLQDTILFPVGGGHPDDHGLI----GDVPVLRVTRQGPEAVHFVSS----PLEEGQEVR 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + +D+  R      HS  HL+     ++ G   +          +  D    K     +L
Sbjct: 94  VKVDWDRRFDHMQQHSGQHLITALADSLFGYKTTSWEHGRQRSNIELDTPSFK---PGQL 150

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSS 691
           +++ED VN+ I  ++PV  + ++ +D       +  L   +   +R+V +E  +      
Sbjct: 151 QALEDAVNEKIRAHIPVTVQFLSLDDPAVEKVRSRGLPEDFAGPIRIVDIEGVEAD---- 206

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            +C GTHVS+   + ++ +V     +     +  + G R   +      K +SL S LK 
Sbjct: 207 -MCCGTHVSNLSHLQVIKLVGTEKGKKNKTNLIFLVGNRVLKYAEKSYNKDRSLVSLLKT 265

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEVDSKEL 809
                V  V+++ +  R L   +     ++   +           NF S    E D++ +
Sbjct: 266 GPDGHVEAVDKLQKSVRLLNKANLSLLREMAVLIAQNFVSSPERSNFFSLHKKEGDNEFM 325

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
             + + L    +  +  L    ++     L+     L+      +L     ++L G G G
Sbjct: 326 NIIANEL--NTEETLAFLTVGEEKGPGLFLLAGPSKLVA-----ELGPQVLEILQGKGAG 378

Query: 870 GRPHMAQS 877
                 Q 
Sbjct: 379 KNGRF-QG 385


>gi|122889667|emb|CAM14330.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
 gi|123236421|emb|CAM21014.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
          Length = 525

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 138/389 (35%), Gaps = 27/389 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV + T  + E GGQ  D G      +        +                L     
Sbjct: 154 FHVVLEDTLLFPEGGGQPDDRGTINDISVLRVTRRGAQAD--------HFTESPLSPGSQ 205

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +             ++     +T+ 
Sbjct: 206 VQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSWEL--GRLRSVIELDSPS-VTAE 262

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN  I   LPV  R ++ +D          L   +   +RVV++E  D    
Sbjct: 263 QVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIEGVDSN-- 320

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  + G R    +       K+L S L
Sbjct: 321 ---MCCGTHVSNLSDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHGSEKALTSLL 377

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K    + V  V+++    + LQ  +      L V      + +        +   +    
Sbjct: 378 KCGVEDHVEAVKKLQNATKLLQKNNLNLLRDLAVHTAHSLRSSPAWGGVVTLHRKEGDS- 436

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
              M+ +  +I S   +L     ++K +   L+    + ++      L    A+VL G G
Sbjct: 437 -EFMNIIANEIGSEETLLFLTVGDEKGAGLFLLAGPAEAVE-----TLGPRVAEVLEGKG 490

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G +    Q      ++  +A A +  ++
Sbjct: 491 AGKKGRF-QGKATKMSRRAEAQALLQDYV 518


>gi|257469927|ref|ZP_05634019.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317064157|ref|ZP_07928642.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313689833|gb|EFS26668.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 374

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 67/335 (20%), Positives = 127/335 (37%), Gaps = 35/335 (10%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             +I+ + R+ ++  H+A HL            ++  G  +  +    D+  S  IT   
Sbjct: 66  ECSINMERRKDIASQHTAQHLFSALA--YNDYQLNTMGFRMAEEYTTVDL-DSNTITEET 122

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +K +E+  N++I + + +    +N E+A+   G    +  K    VR V +   D G   
Sbjct: 123 IKELENKANEVIRRAIELKIYTLNHEEAMKIEGLRKAIKDKVTGDVRFVEIPDTDLG--- 179

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C G HV +T +I L  I+S   I+    R   I G RA      + E  K L     
Sbjct: 180 --ACAGFHVENTKDIKLFKILSHEKIKGNYTRFFFIAGDRALKDYAFKHELSKELCHIFS 237

Query: 751 VSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVD 805
                ++  + +  +E +K++    + A    +L  E L     +I    F+ ++     
Sbjct: 238 CKDHEILTMLNKSLDEKKKIETEMKMIASEFSELLGEKLMKEAEEINGYKFIIYVGD--- 294

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
               K+ +  L + I     +L+  S++  + +         ++ N  D  +        
Sbjct: 295 ----KTTVQYLPRHINPEEYLLITGSEDSYSII--------SNKINCKDFLKELTSASNN 342

Query: 866 GGGGGRPHMAQSGGPNGNKA--DQAIAGVASFLKK 898
             GGG     Q  G    K   ++    + +FL K
Sbjct: 343 IKGGGN----QIKGNFKGKISKEELKKQLETFLNK 373


>gi|122889668|emb|CAM14331.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
 gi|123236422|emb|CAM21015.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
          Length = 543

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 138/389 (35%), Gaps = 27/389 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV + T  + E GGQ  D G      +        +                L     
Sbjct: 172 FHVVLEDTLLFPEGGGQPDDRGTINDISVLRVTRRGAQAD--------HFTESPLSPGSQ 223

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +             ++     +T+ 
Sbjct: 224 VQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSWEL--GRLRSVIELDSPS-VTAE 280

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN  I   LPV  R ++ +D          L   +   +RVV++E  D    
Sbjct: 281 QVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIEGVDSN-- 338

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  + G R    +       K+L S L
Sbjct: 339 ---MCCGTHVSNLSDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHGSEKALTSLL 395

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K    + V  V+++    + LQ  +      L V      + +        +   +    
Sbjct: 396 KCGVEDHVEAVKKLQNATKLLQKNNLNLLRDLAVHTAHSLRSSPAWGGVVTLHRKEGDS- 454

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
              M+ +  +I S   +L     ++K +   L+    + ++      L    A+VL G G
Sbjct: 455 -EFMNIIANEIGSEETLLFLTVGDEKGAGLFLLAGPAEAVE-----TLGPRVAEVLEGKG 508

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G +    Q      ++  +A A +  ++
Sbjct: 509 AGKKGRF-QGKATKMSRRAEAQALLQDYV 536


>gi|77627733|ref|NP_001029281.1| alanyl-tRNA editing protein Aarsd1 [Rattus norvegicus]
 gi|81883726|sp|Q5XI97|AASD1_RAT RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein 1
 gi|54035303|gb|AAH83790.1| Alanyl-tRNA synthetase domain containing 1 [Rattus norvegicus]
 gi|149054301|gb|EDM06118.1| similar to hypothetical protein MGC2744, isoform CRA_a [Rattus
           norvegicus]
          Length = 412

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 139/390 (35%), Gaps = 29/390 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VV + T  + E GGQ  D G      +        +             +  L     
Sbjct: 41  FQVVLEDTLLFPEGGGQPDDRGTINDISVLRVTRRGAQAD--------HFTQTPLSPGSQ 92

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +             ++     +T+ 
Sbjct: 93  VQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSWEL--GKLRCVIELDSPS-VTAE 149

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN  I   LPV  R ++ +D          L   +   +RVV++E  D    
Sbjct: 150 QVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIEGVDSN-- 207

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHV++  ++ ++ I+     +     +  + G R    +       K+L S L
Sbjct: 208 ---MCCGTHVNNLSDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHGSEKALTSLL 264

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K    + V  V+++    + LQ  +      L V      + +        +   +    
Sbjct: 265 KCGAEDHVEAVKKLQNATKLLQKNNLNLLRDLAVHTAHTLRSSPAWGGVVTLHRKEGDS- 323

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKAS---VLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
              M+ +  +I S   +L     ++K +   +L   TE +        L    A+VL G 
Sbjct: 324 -EFMNIIANEIGSEETLLFLTVGDEKGAGLFLLAGPTEAVE------TLGPRVAEVLEGK 376

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G G +    Q      ++  +  A +  ++
Sbjct: 377 GAGKKGRF-QGKATKMSRRAEVQALLQDYV 405


>gi|73965625|ref|XP_537630.2| PREDICTED: similar to CG10802-PA [Canis familiaris]
          Length = 543

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 141/390 (36%), Gaps = 29/390 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VV + T  + E GGQ  D G   G  +        +             +  L     
Sbjct: 172 FQVVLEDTLLFPEGGGQPDDHGTINGISVLRVTRRGAQAD--------HFTQTPLAPGTE 223

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +             ++     +T  
Sbjct: 224 VQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWEL--GRLRSVIELDSPS-VTIE 280

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN+ I   LPV  R ++ +D          L   +   +RVV++E  D    
Sbjct: 281 QVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIENVDAN-- 338

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  + G R    +       K+L + L
Sbjct: 339 ---MCCGTHVSNLSDLQVIKILGIEKGKKNKTNLAFLAGNRVLKWMERSHGTEKALTALL 395

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKE 808
           K    + V  V+++    + LQ  +      L V    S     D   +   +   +   
Sbjct: 396 KCGVEDHVEAVKKLQNSTKLLQKNNLNLLRDLAVHVAHSLRNSPDWGGVV-TLHRKEGDS 454

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
               M+ +  +I S   +L     ++K +   L+    + ++      L    A+VL G 
Sbjct: 455 --EFMNIIANEIGSEETLLFLTVGDEKGAGLFLLAGPAEAVE-----TLGPRVAEVLEGK 507

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G G +    Q      +   +A A +  ++
Sbjct: 508 GAGKKGRF-QGKATKMSGRAEAQALLQDYI 536


>gi|312379150|gb|EFR25519.1| hypothetical protein AND_09072 [Anopheles darlingi]
          Length = 411

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 130/382 (34%), Gaps = 34/382 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           ++++   S     V+F+ T  + E GGQ  D G      ++  +      A+ I      
Sbjct: 17  KVIQCDKSDGGYAVIFEDTILFPEGGGQPYDHGLVGDRKVKSIVRKG---AQAIHFFEGD 73

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E    +    +V  +D+  R      HS  HL+       L  +            +  
Sbjct: 74  EETAPFKVGDEVVQRLDWDRRFDHMQQHSGQHLITAIFDRELKYNTKSWWLGSESSYIDL 133

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYNDR 675
           D    K ++  +L  +E   N +I    PV  ++   +D             L    +  
Sbjct: 134 DA---KDVSVEQLALVEKICNQLIVDCTPVGVKVYEADDPALKSDVTRATRGLPEDVSGP 190

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +RVV++E  +       +C GTHV +  ++  + ++S          +  + G R    L
Sbjct: 191 LRVVTIEGVESN-----MCCGTHVRNLAQLQTIKLLSVE-KAKNKCLVHFLVGGRVLRKL 244

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIA 792
               E+       L     + V  V ++    R  Q +  K   +L     E L+   +A
Sbjct: 245 TECYEREVQFNGLLNGGASSHVDLVRKLQSTVRSTQRVAKKLSTELATLEAEKLNQQPVA 304

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE--KKASVLIVVTEDLLDRF 850
              F  H     +S  + + +  ++  +    + L     +   K  +++        + 
Sbjct: 305 PKYFTHHRCDGPESDFINTFLRMVK--LPDCFLFLTNAETDNSGKGQLVL--------QG 354

Query: 851 NAVDLAR---LSAKVLGGGGGG 869
            A D+A        +L G G G
Sbjct: 355 KAEDIAALGPEMCTILEGKGNG 376


>gi|153007207|ref|YP_001381532.1| threonyl/alanyl tRNA synthetase SAD [Anaeromyxobacter sp. Fw109-5]
 gi|152030780|gb|ABS28548.1| Threonyl/alanyl tRNA synthetase SAD [Anaeromyxobacter sp. Fw109-5]
          Length = 401

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 88/404 (21%), Positives = 145/404 (35%), Gaps = 19/404 (4%)

Query: 495 IVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           ++    IV  A     +  V+ D+T FY E GGQ  D G     G    +   +   E +
Sbjct: 12  LLDFEAIVTAAREVDGRAAVLLDRTAFYPEGGGQPADRG---SLGGVPVVDVRELGGEIL 68

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            V       G       +   +D Q RR     H   HLL  A               + 
Sbjct: 69  HVLAGPAPAG------KVAGRVDGQRRRDHVQQHHGQHLLSAAF--EGARGARTLSFHLG 120

Query: 614 PDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
                 D+      +    L+++E   N ++  +LPV  R ++  D  A           
Sbjct: 121 EATCTIDLDAPAASLDEGALRAVEAAANALVFADLPVEARELSPADLDALPLRKA--PTK 178

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
             RV VV      GG+  ++ CGGTH   TGE+  + ++      AG  R+E + G RA 
Sbjct: 179 GARVVVVGEAGTPGGIVDASPCGGTHPRRTGEVGAIAVLGVQKWGAGS-RVEFVCGARAV 237

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           + L     +L   A  L+ +   V        E+    +    +  L L   +      A
Sbjct: 238 AALAQARARLGEAARALRCAPAEVPAAAARAAEDGAARRKDVERLALALAATEADRLAAA 297

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
               +  +I    +     V          G + L+G  ++ +A +     +      + 
Sbjct: 298 SGGTVRAVIVPPAAGAPAFVKAVAAALAARGRVALLGAVEDGRAHLAFARPKG--SGPHL 355

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +L R++A  L  G GGG P +AQ  GP   + + A+    + L
Sbjct: 356 GELVRVAAAALS-GKGGGAPDLAQGSGPEAARLEAALVDAEATL 398


>gi|157363421|ref|YP_001470188.1| threonyl/alanyl tRNA synthetase SAD [Thermotoga lettingae TMO]
 gi|157314025|gb|ABV33124.1| Threonyl/alanyl tRNA synthetase SAD [Thermotoga lettingae TMO]
          Length = 369

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 123/295 (41%), Gaps = 21/295 (7%)

Query: 506 VSGQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
               K     +++PFY +  GGQLGD G        L +   +++     +  A VE G 
Sbjct: 9   EENDKFLAFAEKSPFYPDGKGGQLGDRGKIDTA---LVLGVEEREGLICHILDAPVEPGE 65

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                     IDY  R+ ++I HSA H+L  +   +    +      +  +    D+   
Sbjct: 66  H------TFEIDYLRRKDIAIQHSAQHILSASFLRVA--DIQTLSFHMGEEFSTIDLDVP 117

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + IT   L+ +E+  N+I+   + V     N E A        L  K  + VRVV +   
Sbjct: 118 Q-ITEVVLQEVEEMANEIVRSCIKVEIVETNIESAKNLNLRKSLSEKVGEIVRVVKIGDF 176

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D      + C G HVS+TG+I ++ IVS   ++  + R+  + G RA      +   L+ 
Sbjct: 177 D-----LSACAGFHVSNTGKIGIIKIVSWEKVKKTLTRVYFLAGNRALRDYSIRVSVLRE 231

Query: 745 LASFLKVSQGNVVGRVEEIWEEYR---KLQLIHAKRKLQLNVEDLSCHKIADVNF 796
           L++ L  S   +  R   + E+ +    L    ++   +   +DL  HKI  +N 
Sbjct: 232 LSTLLTSSVSEMPARTRILLEKVKDQAALINRISEEYAKYLSKDLETHKIKGINV 286


>gi|291442032|ref|ZP_06581422.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291344927|gb|EFE71883.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 324

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +  + ++LPV  R M   +A   GA AL    Y ++VRVV +    GG  S  LCGGTH
Sbjct: 61  ADQALRRDLPVGVRWMTLPEAKELGALALFDETYGEKVRVVEI----GGAWSRELCGGTH 116

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V    +I  + + SESS+ AG+ R+EA  G     +L  + + +  +A  L+  +  +  
Sbjct: 117 VEHASQIGTVVLTSESSVGAGMCRLEAAVGIEGFGYLARERDPVTRIAEQLQAPRAELPY 176

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVM 813
            +  + +  +     + + + Q +    S        +     ++         + +++ 
Sbjct: 177 HIAGLPDRLKSADRENQRIREQADRARASDLAADATDVDGTPVVTATTDG----DAQALA 232

Query: 814 DALQKKIQSG 823
            A++ ++ + 
Sbjct: 233 IAVRDRLPAA 242


>gi|238564835|ref|XP_002385735.1| hypothetical protein MPER_16299 [Moniliophthora perniciosa FA553]
 gi|215435605|gb|EEB86665.1| hypothetical protein MPER_16299 [Moniliophthora perniciosa FA553]
          Length = 80

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
            S +R  F  +F+   H L+PSSS IP +DPTL+F N+GM  +K IF G   P      
Sbjct: 12 TASKVRDEFFNYFRSREHTLVPSSSTIPYDDPTLLFANAGMNQYKAIFLGTVDPNSDLAK 71

Query: 59 -QAVTTVQK 66
           +     QK
Sbjct: 72 LKRAFNSQK 80


>gi|302886448|ref|XP_003042114.1| hypothetical protein NECHADRAFT_86981 [Nectria haematococca mpVI
           77-13-4]
 gi|256723022|gb|EEU36401.1| hypothetical protein NECHADRAFT_86981 [Nectria haematococca mpVI
           77-13-4]
          Length = 434

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 122/364 (33%), Gaps = 22/364 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            +  +EA    +  +    +  + E GGQ  D G         Q     K  +   +   
Sbjct: 46  KKKKQEAAPQDEWLIECADSVLFPEGGGQPSDHGTITLLSGSDQTPISIKNVQRHGLRCV 105

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           I     L     +   +D+  R      H+  HLL   +    G      G         
Sbjct: 106 IYSPQPLSPGDKIRQEVDWARRWDHMQQHTGQHLLSAIMMNDHGLKTLGWGMGAAGTMNY 165

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+   +  T  E++SI+   +++I  NL +     +                    VRV
Sbjct: 166 VDI--PRKPTEEEMQSIQSRCSELIRDNLSIKVETPDDAKHEKLPGDYDKSE---GVVRV 220

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           + +   D        C GTH+S T  + L+ + S  S+     R+  +TG RA S     
Sbjct: 221 IHIGDID-----INTCCGTHLSQTSHVSLVILGSTQSVHGKNCRLSFMTGDRAVSLANAS 275

Query: 739 DEKLKSLASFLKVS--QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI---AD 793
              + S+A  +  S     V+ +   + +   +L+ +  K  L++   +           
Sbjct: 276 VGAVGSIAKLMSSSSVPTEVLAKTSTMCDTVTELRRVERKLMLEIAKYESDRVNAVIRGG 335

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKEKKASVLIVVTE-----DLL 847
            N   +         +  ++   ++    +G +++  I + K    +++V +     D+ 
Sbjct: 336 KNAYVYRSDG-GMDFINKIVGETKEAAQGTGHVVVFAIGESKSTGPVVIVGDKEAVEDMA 394

Query: 848 DRFN 851
            +  
Sbjct: 395 TKVK 398


>gi|71414521|ref|XP_809360.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70873729|gb|EAN87509.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 462

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 141/413 (34%), Gaps = 51/413 (12%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
               +     VV   +  + E GGQ  D G  +     + + +VQ++ +   +       
Sbjct: 49  NSTNTNPSYNVVLTDSVLFPEGGGQPCDHGTIVYGNEEVPVRNVQRRGDTCVISTPC--- 105

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D+  R     +HSA HLL   +       +      +T       + 
Sbjct: 106 -PLEAGEEVEVRVDWPRRFDHMQHHSAQHLLSAVVEKAPQCRLPTVSWSLTHPYSFIVLP 164

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVS 680
               I S  +  +E   ND IA+ +PV   +   ++A        +  + +  +  +  S
Sbjct: 165 TGNKIDSDVVAHLEKVCNDAIARAVPVRCDMYPSKEAYEQALREKVEKEDSGEIFRQSRS 224

Query: 681 VEYEDGGVH---------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           +  +  G               C GTHVS+  ++ ++ ++ + +    ++ +  +TG R 
Sbjct: 225 IPSDVTGPIRIITVEDGIDQCTCCGTHVSNLTQLQMIKLLHQETKGDTLK-LFFVTGDRL 283

Query: 732 RSHLMGQDEKLKSLASFL-KVSQGN-VVGRVEE------IWEEYRKLQLIHAKRKLQLNV 783
             +      + K L   L  V     V   V+       + +  + L L   K + +  +
Sbjct: 284 CRYYGDMYFREKELMKELGGVRPEEFVAAAVKRGKEYADMEKRLKNLTLELMKAESEKLI 343

Query: 784 EDLSCHKIADV--NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-----GISKEKKA 836
            +             + +   +V      ++ DA+++     + +L        +    A
Sbjct: 344 AEAKASLAEGAGGGIVVYRRDDVGGDFFNALRDAIRQACPECLAVLAWGSPVATATAGGA 403

Query: 837 --------SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG----G--GRPHMA 875
                    ++I  T+ +        LA      L G GG    G  G+ ++A
Sbjct: 404 LGRAKTGQFMVIGPTDRVES------LAPSVCIALEGKGGMSKYGYRGKGNLA 450


>gi|220919455|ref|YP_002494759.1| phosphoesterase DHHA1 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957309|gb|ACL67693.1| phosphoesterase DHHA1 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 406

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 133/377 (35%), Gaps = 25/377 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D+T FY E GGQ  D G   G  +        +    +                 + 
Sbjct: 31  LVLDRTAFYPEGGGQPADRGRLGGAAVVDVQEVDGEVLHALEGT-------PPDAGAPVP 83

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   RR     H   HLL  A     G+H            +  D      +  A L
Sbjct: 84  GEVDAARRRDHLQQHHGQHLLSAAFEATAGAHTVSFHLGAETCTIDLDAP-PAGLGEARL 142

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSS 691
           ++ E   ND++ ++LPV  R     +  A               R+V V     G V  +
Sbjct: 143 RAAEARANDLVFRDLPVTARDFAPAELAALPLRKA----PEKGARIVVVGDLARGEVVDA 198

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
           + CGGTH   TG +  + ++      AG  R+E + G RA   L     +L + A+ L+ 
Sbjct: 199 SPCGGTHPRRTGAVGAVAVLGAQKWGAGT-RVEFVCGARAVRALAEARGRLAAAAASLRC 257

Query: 752 SQGNVVGRVEEIWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
           +   V      +  E     + L  + A           +      V  +    +   + 
Sbjct: 258 APAEVPAATARLAAESAQRRKDLDRLAAALAEGEADRLAAAQPAGAVRAVLAPPAPGAAG 317

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL---LDRFNAVDLARLSAKVLG 864
            L++V   L  + ++     +G  +E +A +      D    +   +     R +A  L 
Sbjct: 318 YLRAVAAGLAARGRAA---FLGAEEEGRAHLAFARPRDTGPGVTGVDMGARVREAAARL- 373

Query: 865 GGGGGGRPHMAQSGGPN 881
           GG GGG P +AQ  GP+
Sbjct: 374 GGKGGGAPDLAQGSGPD 390


>gi|291406181|ref|XP_002719462.1| PREDICTED: alanyl-tRNA synthetase domain containing 1-like
           [Oryctolagus cuniculus]
          Length = 412

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 141/392 (35%), Gaps = 33/392 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV + T  + E GGQ  D G   G  +        +                      
Sbjct: 41  FHVVLEDTLLFPEGGGQPDDRGTINGVSVLRVTRRGPQADHFTQTAL--------TPGSQ 92

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +             ++     +++ 
Sbjct: 93  VQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWEL--GRLRSTIELDSPS-VSAE 149

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           +  +IE +VN+ I   LPV  R ++ ED          L   +   +RV++++  D    
Sbjct: 150 QAAAIEQSVNEKIRDRLPVHVRELSLEDPEVEQVRGRGLPDDHTGPIRVITIQGVDSN-- 207

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  + G R  S +       K+L + L
Sbjct: 208 ---MCCGTHVSNLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLSWMERSHGTEKALTALL 264

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKE 808
           K    + V  V ++    + LQ  +      L V    S     D   +  ++   ++  
Sbjct: 265 KCGAEDHVEAVRKLQNSTKLLQKNNLNLLRDLAVHIAHSLRNSPDWGGVV-VLHRKEADS 323

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKAS---VLIVVTEDLLDRFNAVDLARL-SAKVLG 864
               M+ +  +I S   +L     ++K +   +L    E       AV++     A+VL 
Sbjct: 324 --EFMNIIANEIGSEETLLFLTVGDEKGAGLFLLAGPAE-------AVEILGPRVAEVLE 374

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G G G +    Q      ++  +  A +  ++
Sbjct: 375 GKGAGKKGRF-QGKATKMSRRAEVRALLQDYV 405


>gi|224543391|ref|ZP_03683930.1| hypothetical protein CATMIT_02592 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523678|gb|EEF92783.1| hypothetical protein CATMIT_02592 [Catenibacterium mitsuokai DSM
           15897]
          Length = 365

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 137/374 (36%), Gaps = 41/374 (10%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
             V   K E++ DQT F+ E GGQ  D G      ++            +  HH      
Sbjct: 19  TVVEVNKNEIILDQTLFFPEEGGQECDLGTINDIPVKDVQIKNDVIIHYVKKHH------ 72

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                 ++   ID++ R     NH+  HLL   + ++ G              + +D   
Sbjct: 73  -FNVGDTIEGHIDWKRRYSFMQNHTGEHLLSGIVHSLYGYDNVSFHLNSEEGQVEYD--- 128

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                  ++  IE+ VN  I +N  +     +  ++I+  +          +VR+V ++ 
Sbjct: 129 ---GDIKDIDLIEEKVNQAIYENKEIHCFYPDDLESISYRSKKE----IEGKVRIVEIKD 181

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            D        C   HV  TGE+ +  I+       G  R   + G+RA        + L+
Sbjct: 182 YD-----ICACCAPHVKRTGELGIFKIIKVIHTTRGT-RFIFLFGERAYHRFKDDFDHLE 235

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
           SL      +   +V +V +++EE   L++ +A+ + +  +       + D  ++   + +
Sbjct: 236 SLYHLFSSNNQTLVKQVNKMYEEKTALEVKYAQLEKEHMLS------LCDHAYLF--VED 287

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
                 + V + L     +G + +   + EK    +I          NA+D+      + 
Sbjct: 288 CLPANQREVTNHLVNVYSTGGVFVG--NDEKGYRYVIGSAN------NALDILTQLKSLK 339

Query: 864 GGGGGGGRPHMAQS 877
               GGG   M Q 
Sbjct: 340 S--KGGGSKDMIQG 351


>gi|197124734|ref|YP_002136685.1| phosphoesterase DHHA1 [Anaeromyxobacter sp. K]
 gi|196174583|gb|ACG75556.1| phosphoesterase DHHA1 [Anaeromyxobacter sp. K]
          Length = 406

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 132/377 (35%), Gaps = 25/377 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D+T FY E GGQ  D G   G  +        +    +                 + 
Sbjct: 31  LVLDRTAFYPEGGGQPADRGRLGGAAVVDVQEVDGEILHALEGT-------PPDAGAPVP 83

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   RR     H   HLL  A     G+H            +  D      +  A L
Sbjct: 84  GEVDAARRRDHLQQHHGQHLLSAAFEATAGAHTVSFHLGAETCTIDLDAP-PASLGEARL 142

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSS 691
           ++ E   ND++ ++L V  R     +  A               R+V V     G V  +
Sbjct: 143 RAAEARANDLVFRDLTVTARDFAPAELAALPLRKA----PEKGARIVVVGDLARGEVVDA 198

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
           + CGGTH   TG +  + ++      AG  R+E + G RA   L     +L + A+ L+ 
Sbjct: 199 SPCGGTHPRRTGAVGAVAVLGAQKWGAGT-RVEFVCGARAVRALADARGRLAAAAASLRC 257

Query: 752 SQGNVVGRVEEIWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
           +   V      +  E     + L  + A           +      V  +    +   + 
Sbjct: 258 APAEVPAATARLAAESAQRRKDLDRLAAALAEGEADRLAAAQPAGAVRAVLAPPAPGAAG 317

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL---LDRFNAVDLARLSAKVLG 864
            L++V   L  + ++     +G  +E +A +      D    +   +     R +A  L 
Sbjct: 318 YLRAVAAGLAARGRAA---FLGAVEEGRAHLAFARPRDAGPGVTGVDMGARVREAAARL- 373

Query: 865 GGGGGGRPHMAQSGGPN 881
           GG GGG P +AQ  GP+
Sbjct: 374 GGKGGGAPDLAQGSGPD 390


>gi|290953863|ref|ZP_06558484.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
          URFT1]
 gi|295312766|ref|ZP_06803503.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
          URFT1]
          Length = 61

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 35/56 (62%)

Query: 1  MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP 56
          M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK 
Sbjct: 1  MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKR 56


>gi|307297735|ref|ZP_07577541.1| Threonyl/alanyl tRNA synthetase SAD [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916995|gb|EFN47377.1| Threonyl/alanyl tRNA synthetase SAD [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 372

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 127/368 (34%), Gaps = 32/368 (8%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G     +     F     GQLGD G         +I  V+K  + + +           
Sbjct: 12  EGTTYIKICYGNVFVDGEAGQLGDRGEVDS----FKIKSVKKIGDEVVLEIDGKI--EKN 65

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + + ID + R  +S  H+A HLL      +        G  +  +    D++    
Sbjct: 66  KGEMVDIRIDEERRIDISQQHTAQHLLSAVF--LSEMDAETVGFQMGEEYTTIDLSL-GI 122

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +    +  +E   N+ I ++  V   +++R +         +  +  +  R + +   DG
Sbjct: 123 LKDDMIDYVERLCNNFIGEDRAVRKFVVDRSEIQKYHLRKEIKREITESEREIRLVEIDG 182

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                + C G HV  TG+I LL I+    ++  + R+  + G+RA +    + + + + +
Sbjct: 183 --IDLSACSGLHVERTGQIGLLKILKHEKVKGSLTRVYFVAGKRALNDYFTKHKLITNSS 240

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
             L  S  ++  R+  + +E R+          +L        +I         + + +S
Sbjct: 241 LLLTCSYLDLTDRIASLIDEIRQDNSKIRSFSERLAGY--VAREINGSKSRVIFLEDEES 298

Query: 807 KELKSVMDALQKKIQSGIIM---LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
                    +   I   + +   L+    + +  +           ++  ++     K  
Sbjct: 299 ---------ILASIPRFVTLEEYLIIGKSDDRILLFC-------KGYDCREVLTRIKKEF 342

Query: 864 GGGGGGGR 871
              GG G+
Sbjct: 343 DVKGGSGK 350


>gi|222099897|ref|YP_002534465.1| Alanyl-tRNA synthetase-related protein [Thermotoga neapolitana DSM
           4359]
 gi|221572287|gb|ACM23099.1| Alanyl-tRNA synthetase-related protein [Thermotoga neapolitana DSM
           4359]
          Length = 370

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 148/403 (36%), Gaps = 45/403 (11%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           +  +I E   +  +V  +  ++PFY +  GGQLGD G      +             +  
Sbjct: 2   KNIKIEEVVKNENQVIAIARESPFYPDGKGGQLGDRGKIGPARVLKVKEKNGYILHYL-- 59

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
                              ID   R+ ++  H+A H+L  A   +  + +      +  +
Sbjct: 60  -------DTELEPGEYDCEIDLSRRKDIACQHTAQHILSAAF--LKTADLETVSFHMGEE 110

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
               D+     I    L+ +ED  N+++ +   V    ++ ++A       +   +  ++
Sbjct: 111 ISTIDLNAP-FILEDVLEEVEDLANEVVRKCERVEISEVDLKEAETLNLRKI--PEVKEK 167

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +RVV +   D        CGG HV +TGEI L+ IV    ++    R+  + G+RA    
Sbjct: 168 IRVVKIGDFD-----ITACGGFHVENTGEIGLIKIVDTEKVKKMFTRVYFVAGERALKDY 222

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             +D  ++SL + L  S   +  RV+ + E  +  +      KL      L    +A   
Sbjct: 223 RSKDRLIRSLTTVLTTSSQELEKRVKNLLESVK--EKSSKLEKLAELCASLLAKSMASKR 280

Query: 796 FMSHIISEVD-----SKEL-KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
                + + D      K L K + D      ++ II+L       +  ++        + 
Sbjct: 281 VGRFEVYDFDGPQEVGKYLPKFLADR-----ENTIILL---RYPDRVEIV-------SNW 325

Query: 850 FNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQAIA 890
            +   +     + L   GG G  R  ++ S      K ++ + 
Sbjct: 326 LDCRKIFEKLKEELNIEGGAGQKRAIVSTSSSKVVEKIEEILE 368


>gi|126307890|ref|XP_001362776.1| PREDICTED: similar to Alanyl-tRNA synthetase domain containing 1
           isoform 2 [Monodelphis domestica]
          Length = 415

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 135/388 (34%), Gaps = 25/388 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV + T  + E GGQ  D G      +        +    +           L     
Sbjct: 44  YHVVLEDTLLFPEGGGQPDDRGSIDNIPVLRVTRRGSEADHFLLT--------PLAPGSQ 95

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +          +  D      +   
Sbjct: 96  VQVQLDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWELGRCRSTIELDSPM---VLPE 152

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN+ I   LPV+ + ++ +D          L   +   +RV+++E  D    
Sbjct: 153 QIVAIEQSVNEKIRSRLPVIVKELSPDDPEVEKVRGRGLPDDHAGPIRVITIEGVDSN-- 210

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHV +  ++ ++ I+     +     I  +TG R    +       K+L S L
Sbjct: 211 ---MCCGTHVGNLSDLQVIKILGTEKGKKNKTNIVFLTGNRVLKWMERSHGSQKALTSLL 267

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K         V+++    + LQ  +      L V      + +       ++   D    
Sbjct: 268 KCGVEEHAEAVQKLQNSAKLLQKNNLNLLRDLAVLTAHSLRDSPDRGGMIVLHRKDGDS- 326

Query: 810 KSVMDALQKKIQ-SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
              M+ +  +I     ++ + +  EK A + +     L     AVD+       L  G G
Sbjct: 327 -EFMNIIANEIGIEDTLLFLTVGDEKGAGLFL-----LAGPIEAVDMLGPRVAELLQGKG 380

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G+    Q      ++  +  A +  +L
Sbjct: 381 AGKKGCFQGKATKLSRRVEVQALLQDYL 408


>gi|294868394|ref|XP_002765516.1| Alanyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239865559|gb|EEQ98233.1| Alanyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 436

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 68/422 (16%), Positives = 129/422 (30%), Gaps = 39/422 (9%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            + V     G K  V  DQT  Y E GGQ  DTG      +     + + +         
Sbjct: 28  KKAVAPMAKGSKFVVTLDQTLLYPEGGGQPSDTGRIGNAKVLYVNKNSEGEVHHYVDSKV 87

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS---------TILGSHVSQNG 609
                       + +T+D+  R   +  HS  HL+                         
Sbjct: 88  E-------VGSEVAVTLDWDRRWDNTQQHSGQHLISALCEHAEIFPEFGKTDSWEFGNES 140

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             +       D+        + +K++E   N  I ++  V  R M R +           
Sbjct: 141 CSVDIGPCNLDLIPQGETLESRVKALEKACNQAIREHRTVFNRQMKRSELEDENGNRDPM 200

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA--LCGGTHVSSTGEIMLLYIVSESSIRAG-IRRIEAI 726
            +     +V    +    +       CGGTHV +  E+  + I+  S   +  I     +
Sbjct: 201 LRSALPKKVKGDVFRIVEIDGIEKNACGGTHVENLSELQCVKIIGHSLKASTQIVTFTFL 260

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV--E 784
            GQR    L     +  ++ + L   +  +   V++  ++             +L     
Sbjct: 261 IGQRVLDRLEECSNREAAMVNDLSCKREKLPELVQQRLQQLTVANRQVKALTDELVQFLA 320

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                K +  + +     + +S  L  +  AL +KI+        +    KA +L   T 
Sbjct: 321 SDLLEKASGRSVVGA-FRDCESPFLHLLEKALSEKIKE-------MEGTPKAILLCCPTA 372

Query: 845 DLLDRFNAV-------DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ-AIAGVASFL 896
            LL             ++     +  G  G GG+  + Q  G +     +         +
Sbjct: 373 FLLSDCQEGYPLLANKEMLSSLLEEFGAKGAGGKKPVWQ--GKSITGIKERNFKKAMGII 430

Query: 897 KK 898
           ++
Sbjct: 431 EE 432


>gi|126307888|ref|XP_001362694.1| PREDICTED: similar to Alanyl-tRNA synthetase domain containing 1
           isoform 1 [Monodelphis domestica]
          Length = 546

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 141/439 (32%), Gaps = 25/439 (5%)

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y  L      K     +                  I       +         VV + T 
Sbjct: 124 YAELLKKASTKGPPPAMDDLDFSTTVLSCRPAELLIDDGSGNHKNKEKLSGYHVVLEDTL 183

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
            + E GGQ  D G      +        +    +           L     + + +D++ 
Sbjct: 184 LFPEGGGQPDDRGSIDNIPVLRVTRRGSEADHFLLT--------PLAPGSQVQVQLDWER 235

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R      HS  HL+      + G   +          +  D      +   ++ +IE +V
Sbjct: 236 RFDHMQQHSGQHLITAVADHLFGLKTTSWELGRCRSTIELDSPM---VLPEQIVAIEQSV 292

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N+ I   LPV+ + ++ +D          L   +   +RV+++E  D       +C GTH
Sbjct: 293 NEKIRSRLPVIVKELSPDDPEVEKVRGRGLPDDHAGPIRVITIEGVDSN-----MCCGTH 347

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +  ++ ++ I+     +     I  +TG R    +       K+L S LK        
Sbjct: 348 VGNLSDLQVIKILGTEKGKKNKTNIVFLTGNRVLKWMERSHGSQKALTSLLKCGVEEHAE 407

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            V+++    + LQ  +      L V      + +       ++   D       M+ +  
Sbjct: 408 AVQKLQNSAKLLQKNNLNLLRDLAVLTAHSLRDSPDRGGMIVLHRKDGDS--EFMNIIAN 465

Query: 819 KIQ-SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I     ++ + +  EK A + +     L     AVD+       L  G G G+    Q 
Sbjct: 466 EIGIEDTLLFLTVGDEKGAGLFL-----LAGPIEAVDMLGPRVAELLQGKGAGKKGCFQG 520

Query: 878 GGPNGNKADQAIAGVASFL 896
                ++  +  A +  +L
Sbjct: 521 KATKLSRRVEVQALLQDYL 539


>gi|307243241|ref|ZP_07525412.1| threonine/alanine tRNA ligase second additional domain protein
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493369|gb|EFM65351.1| threonine/alanine tRNA ligase second additional domain protein
           [Peptostreptococcus stomatis DSM 17678]
          Length = 464

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 126/336 (37%), Gaps = 23/336 (6%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           +    + +++++R      HS  H+L      +   +       +        +      
Sbjct: 140 DPIFRMVLNWEHREDYMHQHSGQHVLSGVFYKLFSRNT----LGLHIGKDLSQLDIEGEF 195

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
               +K +E   N I++Q + +   +++R+    +     L    ++ +R++ +   D  
Sbjct: 196 DHDMVKEVERYANLIVSQEIKIDNFVLDRDKLEDTYTRRPLPNT-SEDIRILKIGDLD-- 252

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 C G H + TG++ L+ I        G  R E + G+RA S+++ +DE    L  
Sbjct: 253 ---INACCGVHSTDTGQLKLIKIKKYYH-HKGNTRFEYLVGKRAISYILDRDEYFSKLLL 308

Query: 748 FLKVSQGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDLSC---HKIADVNFMSHII 801
               ++ N++  +  +    +++ +   +     L+   + L          +  +  ++
Sbjct: 309 KYDTNEANILNAIGNLEDKKDDFAEKNKLLLDFYLEARSKSLLEGLRENSQGIIVVRGVL 368

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLS 859
            + D+  ++++   +    +S +I   G   + +  +   V + L          + +  
Sbjct: 369 DD-DAWMVEALAKYITNNYKSLVIFASGGQAQPRVFL--QVDKKLAKEESIKLGKVLKDH 425

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           A  L    GGG  +MAQ    +    D+ I  + S 
Sbjct: 426 AG-LADIRGGGSDYMAQGQVLDKKNIDKFIDKIYSI 460


>gi|195448647|ref|XP_002071751.1| GK24978 [Drosophila willistoni]
 gi|194167836|gb|EDW82737.1| GK24978 [Drosophila willistoni]
          Length = 432

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/395 (14%), Positives = 135/395 (34%), Gaps = 38/395 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV + T  + E GGQ  D G   G  +R  + +  +    +                 + 
Sbjct: 46  VVCEDTILFPEGGGQPCDYGSLGGHPVRNVVRNGTQAVHFV------ESPESFEEGTEVE 99

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ++++ R      HS  HL+     +      +              +     I+   L
Sbjct: 100 QVLNWERRLDHMQQHSGQHLISALFDSEFKYETTSWWL--GTSTCYVQLKTPHLISRESL 157

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVH 689
             IE   N++I +   V   +++ E       A        D V   RVV++E  +G   
Sbjct: 158 DLIEQKCNNLIREGREVTVHLIDPEKEYDFQGARAPRGLPKDHVGLARVVNIEGVEGN-- 215

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHV++  ++  + I+    ++  +  +  + G+R    L    ++ + + + +
Sbjct: 216 ---MCCGTHVTNISQLQAIKILYCEKVKTNVL-VHFVVGERVLRKLAEVFQREQQITAAI 271

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL----SCHKIADVNFMS-HIISEV 804
           K      +  ++++ +  +  +    +        +        K     + + H    +
Sbjct: 272 KGGPQQHLDLLQKLQQNVKMTRKCFQQLLKDFAHAEADRLEDLPKAQRPKYFALHRRDGI 331

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKE------KKASVLIVVTEDLLDRFNAVDLARL 858
           +       ++A        I   + +S+        K  +++    +++++     L   
Sbjct: 332 EVD----FINAFLSHAPEEIFYFLTVSEGVAAGSQAKGHLVLRGNPEVVEK-----LGPQ 382

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
             ++L  G G G+    Q    N +K D  +  + 
Sbjct: 383 FLELLE-GKGNGKDGKFQGKINNLSKLDDCMQLLE 416


>gi|325970470|ref|YP_004246661.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta sp. Buddy]
 gi|324025708|gb|ADY12467.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta sp. Buddy]
          Length = 394

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 125/379 (32%), Gaps = 32/379 (8%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
              +V D T  Y E GGQ GD G   G  +     D           H            
Sbjct: 25  DGALVLDSTICYPEGGGQSGDIGTISGVTLLNTTKDDDHTIYHHVAEH------SFVVGA 78

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + + +D+ +R      H+A H+    L T                 +  D      I  
Sbjct: 79  QVGIVLDWNHRYHYMQMHTAQHVASGLLFTHFSIQTVSVHQGERILTIETDAV---AIEP 135

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           +    +ED VND++ QN PV   +  +  A   G    +  +  D VR+V VE  D    
Sbjct: 136 SLCYQLEDLVNDVVRQNHPVHYEVHTQSSAQTLGLRRSIKVE-GDGVRLVVVEQVD---- 190

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +  CGG HV +T EI   +   +  IR G  R+    G  A+  +   +     L    
Sbjct: 191 -TVACGGLHVGNTSEIEFFHYAGQEKIR-GHIRLIFTVGALAKEEIRKVENVAAELGVLF 248

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIIS-E 803
                ++V   + +     +L+    K +  L              +A V  +   I  E
Sbjct: 249 SAPLQDLVDAAKAVVSSAVQLKSELRKAQQLLAKLSLASLVAEAELVASVPVVYWKIPQE 308

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN--AVDLARLSAK 861
           ++ K++              +++      + + S L+ +        +  A    + +  
Sbjct: 309 IEMKDVPQAFTEY-----DELVLCAAKESDGQLSWLVGLQGKATGLLDFPAK---KPALL 360

Query: 862 VLGGGGGGGRPHMAQSGGP 880
               G GGG+  + Q    
Sbjct: 361 AAIQGKGGGKAPLYQGSAK 379


>gi|218296283|ref|ZP_03497039.1| Threonyl/alanyl tRNA synthetase SAD [Thermus aquaticus Y51MC23]
 gi|218243355|gb|EED09885.1| Threonyl/alanyl tRNA synthetase SAD [Thermus aquaticus Y51MC23]
          Length = 375

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 122/334 (36%), Gaps = 23/334 (6%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G+    V  +T FY E+GGQ  DTG   G    +Q+    ++ +  F     V    +
Sbjct: 22  SDGKGHYAVLSETLFYPESGGQPADTGVLRGAFGEVQVLHAYEEEK-AFGDVVHVLSAPV 80

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   I++Q R +    H+A H+L  AL    G H       ++ D     +  ++
Sbjct: 81  PQGAEVEGEINWQRRFRHMQRHTAQHILSQALLRAGGYHTVA----VSLDSPLSTLDLAE 136

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +   +++  E      +  + PV    ++ E+            K   +VR+V +   D
Sbjct: 137 EVEEEKVRQAEALAAFAVYADYPVEAFWVSEEELAHYPLRRP--PKVQGKVRLVRIGDFD 194

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                 A CGGTH+ ++ +   + +      + G  R+  + G  A      +   L  L
Sbjct: 195 -----LAACGGTHLKTSAQAGPIKVQKWERYKGGT-RVYFMAGWEALEDYHAKHALLARL 248

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           A     S  ++   ++ + EE   L+  +   K  L    L          +   +  V 
Sbjct: 249 ALAFSTSALDLEKPIKRLQEELYALKGENQALKEALVEALLP-------RALEERVLLVP 301

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
              +  +   L        ++L   SKE + ++L
Sbjct: 302 QAVIPELAKRLLSWSDKTFLLL---SKEGRFALL 332


>gi|218283792|ref|ZP_03489715.1| hypothetical protein EUBIFOR_02309 [Eubacterium biforme DSM 3989]
 gi|218215598|gb|EEC89136.1| hypothetical protein EUBIFOR_02309 [Eubacterium biforme DSM 3989]
          Length = 364

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 66/380 (17%), Positives = 133/380 (35%), Gaps = 48/380 (12%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           +V      +  +++ DQT F+ E GGQ  D G      +           +   ++  I 
Sbjct: 19  VVSCIKKNELYDIILDQTLFFPEEGGQTCDKGTLNAIEV----------VDVQIINDEIH 68

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                     +   ID+ +R     +H+  H+L   +      HV   G  +  + +  D
Sbjct: 69  HYTHSALNGDVQGIIDWTHRYTNMQHHTGEHILSGLMHK--EFHVDNVGFHLGYNEITAD 126

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
                 + + ++K IE  VN +I  N PV T  +     +          +Y  ++ +  
Sbjct: 127 YAMD--LNNDQIKRIEALVNSVIFSNKPVKTYYLEDYSNM----------EYRAKLDLAK 174

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
               +        C   HV ST E+ L  IV    I+ G  R+  + G+ A    + + +
Sbjct: 175 PRLVEIEDVDLCACCAPHVKSTIEVGLFKIVKSMKIKKGT-RLFFLCGKLAYEDYVLKHD 233

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           +   +++ L  S   +   V+ + +E   L+    +   ++    +  HK   +     +
Sbjct: 234 QSIQISNQLSSSIETLSSNVQRVLDENYALKQRIKQLNKEMVDHLIIEHKENQI----VL 289

Query: 801 ISEVDSKELKSVMDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
             E D    +        K+    +  ++LV   K+    +    ++D+  +       R
Sbjct: 290 CDEFD----RDTQLYYYNKLVSFSNNYVLLVSKQKDNYRFMT--NSKDIFLQLKEKHQVR 343

Query: 858 LSAKVLGGGGGGGRPHMAQS 877
                     GGG+    Q 
Sbjct: 344 ----------GGGKNDFFQG 353


>gi|239933643|ref|ZP_04690596.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 252

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 13/177 (7%)

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M   +A   GA AL    Y ++VRVV +    GG  S  LCGGTHV    +I  + + 
Sbjct: 2   RWMTLPEAKELGALALFDETYGEKVRVVEI----GGAWSRELCGGTHVEHASQIGTVVLT 57

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SESS+ AG+ R+EA  G     +L  + + +  +A  L+  +  +   +  + +  +   
Sbjct: 58  SESSVGAGMCRLEAAVGIEGFGYLARERDPVTRIAEQLQAPRAELPYHIAGLPDRLKSAD 117

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             + + + Q +    S        +     ++         + +++  A++ ++ + 
Sbjct: 118 RENQRIREQADRARASDLAADATDVDGTPVVTATTDG----DAQALAIAVRDRLPAA 170


>gi|313898114|ref|ZP_07831653.1| threonine/alanine tRNA ligase second additional domain protein
           [Clostridium sp. HGF2]
 gi|312957142|gb|EFR38771.1| threonine/alanine tRNA ligase second additional domain protein
           [Clostridium sp. HGF2]
          Length = 385

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 136/383 (35%), Gaps = 33/383 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +++E              T FY E GG   D G          + D     +  +    +
Sbjct: 17  KVLEVREDNGLFWHACKDTIFYKEGGGMASDIG----------MIDEHMVLDLKYEEGHM 66

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 R E ++ ++++   R +    H+A HL+   L  +    V      +  +    
Sbjct: 67  WHLLDTRLEGTVFMSVNLHERFRKCQIHTAQHLISAVLGNVYK--VETLAHHVGDEENDI 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           + +  +  T      ++   N +I  +L V  +   R +A        L     D +RVV
Sbjct: 125 EFS-FEDFTDKMAFELQVLCNGLIRDDLEVSIQYPTRVEASKMAKGKNLD---RDDLRVV 180

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +   D       +CG  HV S   + +LYI        G + I+ + G +    +  + 
Sbjct: 181 RIGALDYN-----MCGCMHVPSLRYLQMLYISGYEKTAKGYK-IKYLVGDQLLDCVSRRY 234

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH---AKRKLQLNVEDLSCHKIADVNF 796
           + L   +  L VS   V   V  +  E R+L        ++  ++  ++L   +      
Sbjct: 235 KVLDEASRSLAVSHLYVNTGVNRLINETRQLNRDIVVWKQKYYEMFGKELGQSEED---I 291

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           + H   ++D K    V   + +  +  +I +          V++   +D+   F++  + 
Sbjct: 292 IIHFFDDIDVKSEADVAKYVTENYKKAVIFVAKTYDN--VHVVVASHKDM--DFDSAKVF 347

Query: 857 RLSAKVLGGGGGGGRPHMAQSGG 879
           +  A       GGG   ++Q GG
Sbjct: 348 KEIADAYHL-KGGGSARLSQGGG 369


>gi|71415943|ref|XP_810020.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874491|gb|EAN88169.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 462

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 141/413 (34%), Gaps = 51/413 (12%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
               +     VV   +  + E GGQ  D G  +     + + +VQ++ +   +       
Sbjct: 49  NSTNTNPSYNVVLTDSVLFPEGGGQPCDHGTIVYGNEEVPVRNVQRRGDTCVISTPC--- 105

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D+  R     +HSA HLL   +       +      +T       + 
Sbjct: 106 -PLEVGEEVEVRVDWPRRFDHMQHHSAQHLLSAVVEKAPQCRLPTVSWSLTHPYSFIVLP 164

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVS 680
               I S  +  +E   ND IA+ +PV   +   ++A        +  + +  +  +  S
Sbjct: 165 TGNKIDSDVVAHLEKVCNDAIARAVPVRCDMYPSKEAYEQALREKVEKEDSGEIFRQSRS 224

Query: 681 VEYEDGGVH---------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           +  +  G               C GTHVS+  ++ ++ ++ + +    ++ +  +TG R 
Sbjct: 225 IPSDVTGPIRIITVEDGIDQCTCCGTHVSNLTQLQMIKLLHQETKGDTLK-LFFVTGDRL 283

Query: 732 RSHLMGQDEKLKSLASFL-KVSQGN-VVGRVEE------IWEEYRKLQLIHAKRKLQLNV 783
             +      + K L   L  V     V   V+       + +  + L L   K + +  +
Sbjct: 284 CRYYGDMYFREKELMKELGGVRPEEFVAAAVKRGKEYADMEKRLKNLTLELMKAESEKLI 343

Query: 784 EDLSCHKIADV--NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-----GISKEKKA 836
            +             + +   +V      ++ DA+++     + +L        +    A
Sbjct: 344 AEAKASLAEGAGGGIVVYRRDDVGGDFFNALRDAIRQACPECLAVLAWGSPVATTTAGGA 403

Query: 837 --------SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG----G--GRPHMA 875
                    ++I  T+ +        LA      L G GG    G  G+ ++A
Sbjct: 404 LGRAKTGQFMVIGPTDRVES------LAPSVCMALEGKGGMSKYGYRGKGNLA 450


>gi|309777073|ref|ZP_07672039.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915143|gb|EFP60917.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 385

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 134/382 (35%), Gaps = 31/382 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +++E              T FY E GG   D G          + D     +  +    +
Sbjct: 17  KVLEVREDNGLFWHACKDTIFYKEGGGMASDIG----------MIDEHMVLDLKYEEGHM 66

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 + E ++ ++++   R +    H+A HL+   L  +    V      +  +    
Sbjct: 67  WHLLDTKLEGTVFMSVNLHERFRKCQIHTAQHLISAVLGNVYK--VETLAHHVGDEENDI 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           +    +  T      ++   N +I  +L V  +   R +A        +     D +RVV
Sbjct: 125 EFN-FEDFTDKMAFELQVLCNGLIRDDLDVSIQYPTRVEASKMAKGKNID---RDDLRVV 180

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +   D       +CG  HV S   + +LYI        G + I+ + G +    +  + 
Sbjct: 181 RIGALDYN-----MCGCMHVPSLRYLQMLYISGYEKSAKGYK-IKYLVGDQLLDCVTRRY 234

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN--FM 797
           + L   +  L VS   V   V  +  E R+L       K +    ++   ++       +
Sbjct: 235 KVLDEASRSLAVSHLYVNTGVNRLINETRQLNRDVIVWKQK--YYEMFAKELGQCTEDVI 292

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
            H   ++D K    V   + +  +  +I +          V++   +D+   F++  + +
Sbjct: 293 VHFFDDIDVKSEADVAKYVTEHYKKAVIFVAKTYDN--VHVVVAAHKDM--DFDSAKVFK 348

Query: 858 LSAKVLGGGGGGGRPHMAQSGG 879
             A      GGG R  ++Q GG
Sbjct: 349 EIADAYHLKGGGNR-QLSQGGG 369


>gi|118103027|ref|XP_001235322.1| PREDICTED: similar to Alanyl-tRNA synthetase domain containing 1
           [Gallus gallus]
          Length = 539

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/335 (18%), Positives = 129/335 (38%), Gaps = 19/335 (5%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              +++L++D++ R      HS  HL+      + G   +          +  D      
Sbjct: 216 PGSAVLLSLDWERRFDHMQQHSGQHLITAIAEQMFGFKTTSWELGRQQSVIELDTP---S 272

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYED 685
           +T+ +++++E +VN+ I + +PV  R +  +D       +  L   +   VRVV +E  D
Sbjct: 273 MTTEQMEALEQSVNEKIRERIPVTVRELAADDPEVETVRSRGLPGDHTGPVRVVDIEGID 332

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                  +C GTHVS+  ++ ++ ++     +     +  + G R    +       K+L
Sbjct: 333 SN-----MCCGTHVSNLSDLQVIKLICTEKGKKNKTNLVFLAGNRVLKSVEQSHRTEKAL 387

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
            S LK   G  V  V+ +    + LQ  +      + V      K   V     ++   +
Sbjct: 388 TSLLKNGPGEHVEAVKRLQSSVKLLQKNNLNLLRDIAVLIARDFKSKPVQSPLFVLHRKE 447

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKK--ASVLIVVTEDLLDRFNAVDLARLSAKVL 863
                  M+ +  +I     +L     ++K     L+  + + ++     +L    A++L
Sbjct: 448 GDS--EFMNIIANEIGKEETLLFLTVGDEKEAGLFLLAGSVEAVE-----NLGPRVAELL 500

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            G G G R    Q      ++  +  A +  F+ +
Sbjct: 501 EGKGAGKRGRY-QGKATKMSRRGEVQALLQEFISQ 534


>gi|253584156|ref|ZP_04861354.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251834728|gb|EES63291.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 374

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 123/336 (36%), Gaps = 37/336 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             TID + R+ ++  H+A HL            ++  G  +  +    D+  S  I+   
Sbjct: 66  EYTIDMERRKDIACQHTAQHLFSALA--YNDYQLNTVGFRMAEEYTTVDL-DSNTISEET 122

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +  +E+  N+II + + +    +N E+A    G    +  K    VR V +   D G   
Sbjct: 123 ITELENKANEIIRKAIELKIYTLNHEEALKIEGLRKAIKDKVTGDVRFVEIPEIDLG--- 179

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C G HV +T +I L  I+S   I+    R   I G RA      + E  K L     
Sbjct: 180 --ACAGFHVENTKDIKLFKILSHEKIKGNYTRFFFIAGDRAIKDYAFKHELSKELCHIFS 237

Query: 751 VSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVD 805
                ++  + +  EE +K +    + A    +L  E L     +I    F+ +   ++ 
Sbjct: 238 CKDYEILTMLNKSLEEKKKTETEMKMIASEFAELLGEKLMREAEEINGYKFVIYTGDKMT 297

Query: 806 SKEL-KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
            + L + +            I++ G   E   S++        ++ N  +  +       
Sbjct: 298 VQYLPRYIA-------PEDYILITGS--EDSYSII-------SNKINCKEFLKELTSFNT 341

Query: 865 GGGGGGRPHMAQSGGPNGNKA--DQAIAGVASFLKK 898
              GGG     Q  G    K   ++    + +FL K
Sbjct: 342 NIKGGGN----QIKGNFKGKISKEELKKQLETFLNK 373


>gi|289423549|ref|ZP_06425350.1| threonyl/alanyl tRNA synthetase, SAD [Peptostreptococcus anaerobius
           653-L]
 gi|289156051|gb|EFD04715.1| threonyl/alanyl tRNA synthetase, SAD [Peptostreptococcus anaerobius
           653-L]
          Length = 424

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 142/411 (34%), Gaps = 41/411 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT- 567
           + +E+ F+ T F+   GGQ  D G              + +      +         +  
Sbjct: 26  ELLELEFEDTIFFPGGGGQPMDRGFISLVSGGEVKHRYKLEDIREVDNRIKHIVSRDQVL 85

Query: 568 -------------EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                        ++  ++ +D+ +R      H+  HLL      +     +  G  I  
Sbjct: 86  STYEISSDKISSGDIECLMELDWDHRIDGMQQHTGQHLLSGCFYKLFK--ANTKGLHIG- 142

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
                 +      T   +K +ED  ND I++ +    +    ++  +      L +  + 
Sbjct: 143 -KDVSQLDIDGEFTDEMVKKLEDYANDQISRAI--NIKNYVLKEGDSLETRRPLPST-DG 198

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +R++ +E  D        C G H+ +T +I ++ I      ++G  R E + G+RA  +
Sbjct: 199 DIRILEIEDLD-----INACCGLHLDNTRDITMVKIKRYYKHKSGT-RFEYLAGKRAVDY 252

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-------LQLIHAKRKLQLNVEDLS 787
           L+ +D    S+ +     + N++  +E I ++          L     K+ +++ +    
Sbjct: 253 LLKRDRIFDSVLNKYSAGEDNIIKSLENIEKKKDDYYSRSAYLLNELIKKDMEIYLSSAK 312

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
            +    +  +       ++  L S+   L +     ++++    K+ K  +  + ++  +
Sbjct: 313 SN-AKGLKVIISKFDNEETWYLDSLAKHLVESGP--LVLIFANKKQGKYMINFMASKTTI 369

Query: 848 DR---FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
                 +   L +  A       GGG    A     +    D  +  V   
Sbjct: 370 SEHTYIDLGKLFKSLANEYPL-KGGGSKFSASGVYDSEKNIDILLDNVYDL 419


>gi|237738437|ref|ZP_04568918.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229420317|gb|EEO35364.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 371

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 128/381 (33%), Gaps = 42/381 (11%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
             +  D     G G +L      ++A+ + V  + V            + IDY  +  ++
Sbjct: 18  EVEPKDILYIDGKGGQLGDRGKIEEAQILEVKESGVVVDRELEYGEYEVKIDYIRQEDIA 77

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A H+            ++  G  +  +    D+  S  IT   ++ +E   N++I 
Sbjct: 78  CQHTAQHMFSAIA--YNDYKLNTVGFRMAEEYTTVDL-DSNEITEEVIEELERKANEVIK 134

Query: 645 QNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           + + +   IMN E+A    G    +  K    VR V +   D G      C G HV +T 
Sbjct: 135 KAIQLKIFIMNNEEARKIEGLRKAIKEKVVGDVRFVEIPGVDLG-----ACAGFHVENTK 189

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  I++   I+    R   + G+RA      + +  K L          ++  +++ 
Sbjct: 190 DIQLFKIINHEKIKGNYIRFYFLAGERALKDYSFKHKLSKDLCHVFSCKDYEIMEMLDKT 249

Query: 764 WEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E +K++  +     Q      N        + +   + +                   
Sbjct: 250 LDEKKKIESEYKNLASQYVEFLANKLLKESEIVGEYQPIFYF------------------ 291

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTED---LLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
              S +   +G    +K  ++     +   +   FN  D  +   K      GGG     
Sbjct: 292 -GDSTVAQFLGKFMGEKNILITGFNNNFSIIAQNFNCKDFIQYLIKEKSTLKGGGN---- 346

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q  G      ++    +   L
Sbjct: 347 QIKGNFKGDIEE--KELKKLL 365


>gi|330837250|ref|YP_004411891.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta coccoides DSM 17374]
 gi|329749153|gb|AEC02509.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta coccoides DSM 17374]
          Length = 424

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 145/402 (36%), Gaps = 45/402 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF-----VHHAIVERGILRT 567
           +V D T FY E GGQ GD G     GI    +   +    I      + H + +   L  
Sbjct: 41  LVLDCTIFYPEGGGQPGDRGIIRKRGIDKGDSLTVQVVATITDEASRILHILDKETSLVP 100

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLRFDVT 622
              + L +D+ +R      H+A H++     T+ G      H    G  I  D     + 
Sbjct: 101 GDDVTLELDWGHRYAYMQMHTAQHMISGLAHTLFGIGTLSVHQGAEGLTIETDRSDIPM- 159

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
                    +  +E+ V   I +++PV++R ++  +A   G    +       VR+VS+E
Sbjct: 160 -------ETIIILEEAVTCAIHRDIPVISREVSHAEATRLGLRRSIK--VEGDVRIVSIE 210

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
             D        CGG HV+ TGE+  +      S+R+ + R++ +TG             +
Sbjct: 211 GIDLM-----ACGGVHVARTGEVRAVRYAGSESVRSHV-RMKWLTGDSVLETERQARAII 264

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI------ADVNF 796
             L + L     ++V  V  +     + +    +   +     L                
Sbjct: 265 GELTTVLSAPPEDIVSSVTALQVSAMQSRHQAEQAMEEAAFLHLLAKAASTPDTYGGTPV 324

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI-SKEKKASVLIVVTEDLLDRFNAVDL 855
           ++  +      ELK V  A+      G I+L      E K +  I + +D    F   + 
Sbjct: 325 VTWDVPAASFMELKHVAAAIPA---CGSIILCATRETEGKTAWCIAL-KDAACNF---ET 377

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            R    +  G  GGG+  + Q   P       A+  +  FL 
Sbjct: 378 IRTEVLLPLGAKGGGKSPLWQGIAPVP-----AVRLIEDFLN 414


>gi|213515028|ref|NP_001133686.1| Alanyl-tRNA synthetase domain-containing protein 1 [Salmo salar]
 gi|209154936|gb|ACI33700.1| Alanyl-tRNA synthetase domain-containing protein 1 [Salmo salar]
          Length = 408

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 131/368 (35%), Gaps = 27/368 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V    T  + E GGQ  D G        + +  V ++        +            + 
Sbjct: 42  VRLQDTILFPEGGGQPDDHGLI----GDVPVLRVTRQGAEAVHFVSSALE----VGQEVQ 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +D++ R      HS  HL+     ++ G   +          +  D    K    A++
Sbjct: 94  LKLDWERRFDHMQQHSGQHLVTAIAESMFGYKTTSWELGRQRSTIELDTPSMK---PAQM 150

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSS 691
           +++E  VN+ I  ++PV  ++++ +D       +  L       +R++ +E  D      
Sbjct: 151 EALEAAVNEKIRAHVPVAVQVLSLDDPALEKVRSRGLPDDAAGPIRIIDIEGID-----V 205

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            +C GTHVS+   + ++ ++     +     +  + G R   +        +SL S LK 
Sbjct: 206 NMCCGTHVSNLSHLQVIKLLGTEKGKKNKTNLLFLVGNRVLKYAEKSYSTERSLVSLLKT 265

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV--NFMSHIISEVDSKEL 809
              + V  V++I +  + LQ  +      + V      K      NF +    E D++ +
Sbjct: 266 GPDDHVDTVDKIQKTVKGLQKSNLGLLRDMAVLIAQNFKCNPERGNFFTLHKKEGDNEFM 325

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
             + + +  +    ++ L    ++     L+             +L     ++L G G G
Sbjct: 326 SIIANEIGTE--ETLVFLTVGEEKGPGLFLLAGPSG-----KVSELGPRVLEMLQGKGAG 378

Query: 870 GRPHMAQS 877
                 Q 
Sbjct: 379 KNGRF-QG 385


>gi|218458422|ref|ZP_03498513.1| class II aminoacyl t-RNA synthetase domain-containing protein
           [Rhizobium etli Kim 5]
          Length = 245

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 104/338 (30%), Gaps = 99/338 (29%)

Query: 43  MVPFKNIFTGQEKPVYQ-AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSF--- 98
           M  +K +F+    P Y   V   Q C+R G    DLD +G    H   F MLG FSF   
Sbjct: 1   MQQYKPLFS---DPSYSGTVANSQACLRLG----DLDEIG-DGTHFLHFTMLGLFSFREM 52

Query: 99  --GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156
             G      AI   W        L     ++T++ +         + + L   ++  +  
Sbjct: 53  TVGD-----AIDF-WLAFLGTLGLAPD--HVTMHPDRL------IEWTPLYGGRVPIVAD 98

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            +  WS       G C+E F+  G                 IEI N+V            
Sbjct: 99  AECIWSDGSI--SGYCTE-FYKHG-----------------IEIGNIV------NPLGS- 131

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV 276
                  ID G G ER+  ++        ++  +  +                       
Sbjct: 132 ------CIDVGFGAERLDMIVNGTPPADALETLRETVMTI-------------------- 165

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
                    +  G  P N+ +GYVLR+++RR       L +              E+   
Sbjct: 166 ---------VESGYRPGNKEQGYVLRKLLRRIHRMGGTLDHP---------FFGEEVERQ 207

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
                +   L +       E +  T    L  ++ ++ 
Sbjct: 208 KRLGAKYLRLRDRYCDKGAEWWFDTHGIDLSDIEEIIE 245


>gi|119581310|gb|EAW60906.1| alanyl-tRNA synthetase domain containing 1, isoform CRA_d [Homo
           sapiens]
          Length = 536

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 112/302 (37%), Gaps = 21/302 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VV + T  + E GGQ  D G      +       ++             +  L     
Sbjct: 215 FQVVLEDTVLFPEGGGQPDDRGTINDISVLRVTRRGEQAD--------HFTQTPLDPGSQ 266

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +++ +D++ R      HS  HL+      +     +             ++     +T+ 
Sbjct: 267 VLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWEL--GRFRSAIELDTPS-MTAE 323

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN+ I   LPV  R ++ +D      +   L   +   +RVV++E  D    
Sbjct: 324 QVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIEGVDSN-- 381

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  ++G R    +       K+L + L
Sbjct: 382 ---MCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALL 438

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL----SCHKIADVNFMSHIISEVD 805
           K    + V  V+++    + LQ  +      L V       +      V  +  +   ++
Sbjct: 439 KCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSPDWGGVVILHRVAEVLE 498

Query: 806 SK 807
            K
Sbjct: 499 GK 500


>gi|261331286|emb|CBH14276.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 468

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 140/402 (34%), Gaps = 52/402 (12%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           +    Q  +V+   +  + + GGQ  D G  I      ++     +  G      +    
Sbjct: 56  QVELPQSYDVILTDSVLFPDGGGQPCDHGVLIRRETNEELPVRVVQRRGDLCVMNLPCML 115

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
             +    + L +D+  R     +HSA HLL   +       +      +T       +  
Sbjct: 116 --KVGEDVQLRVDWDRRLDHMQHHSAQHLLTAVVEDPGFCGLPTVSWALTQPYCHIVLPT 173

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG---------------AAALL 668
            K I    ++ IE++ N +IA+ +PV  R+ + ++   +                 +  +
Sbjct: 174 GKRIEPEMVQRIEEHCNRVIARAVPVRCRVYSSKEEYENDLQREPEKNDDGGRLRGSRPI 233

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                  +R++ +E  D        C GTHV++  ++ +L ++ + +    ++ +  I G
Sbjct: 234 PPDVAGPIRIIDMEGID-----CCTCCGTHVTNLAQLQVLKLLHQETKGDTLK-LFFIAG 287

Query: 729 QRARSHLMGQDEKLKSLASFL-KVSQGN-VVGRVEE------IWEEYRKLQLIHAKRKLQ 780
           +R R        + + L   +  +   + V   + +      + +  + +     K + +
Sbjct: 288 ERVRRFFGDMYGRERELMKEMGGIRPEDFVSAAIRKGKDFVELEKRLKHMTQELMKLRSE 347

Query: 781 LNVEDLSCHKIADV--------NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV---- 828
             + +                   + +   +VD+     + D L++   + + +      
Sbjct: 348 KLIAEAKQLSENGKGDSASHRPPVVVYRRDDVDADFFSGLRDELRQACPNCVGVFAWAMA 407

Query: 829 --GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
               +K  +  +++  TE +        LA +    L G GG
Sbjct: 408 PLTAAKTGQ-FMIVGPTESVE------VLAPVVCAALEGKGG 442


>gi|239617886|ref|YP_002941208.1| Threonyl/alanyl tRNA synthetase SAD [Kosmotoga olearia TBF 19.5.1]
 gi|239506717|gb|ACR80204.1| Threonyl/alanyl tRNA synthetase SAD [Kosmotoga olearia TBF 19.5.1]
          Length = 377

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 130/364 (35%), Gaps = 27/364 (7%)

Query: 509 QKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
               + F++   Y +  GGQLGD G   G+ I             I       ++    T
Sbjct: 13  DFSLLCFEKGTLYVDGEGGQLGDRGKIDGNKILQVKRVDGYPCAVI------EKKNNYST 66

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L +D + R  ++  H+A HLL       L       G  +  +    D+T    +
Sbjct: 67  GEFVELELDLERRVDIAQQHTAQHLLSAVALREL--DAETVGFQMGEEFSTIDLTI-GLL 123

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
                + +ED  ND I + LPV  + ++  +         +  K  ++   + +   +G 
Sbjct: 124 EDKMKRLLEDVSNDCILKLLPVTVKEVDPSEIFRYNLRKSVSDKILEKAEKIRLVKIEG- 182

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
               + CGG HV +TGE+ LL I+    ++  + R+  + G+RA      +   L SL  
Sbjct: 183 -IDVSPCGGFHVKNTGEVGLLKILKVEKVKGNLTRVYFVAGKRAIRVFQNEHSILGSLGK 241

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
            L      +V R + I E+ + +         ++  E  +         + +     D +
Sbjct: 242 LLTCGYHELVSRTQSILEDLKIMNNRIKGYVERIAKETANNLSENSSELLLYE----DDE 297

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
           E+ S++     K       +      +K  +           ++   L +         G
Sbjct: 298 EILSMIPRFLDKE----CYIFFGKAGEKIIL-------ASKGYDLTILVKELKSRFDIKG 346

Query: 868 GGGR 871
           G G+
Sbjct: 347 GAGK 350


>gi|71744796|ref|XP_827028.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70831193|gb|EAN76698.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 468

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 60/404 (14%), Positives = 144/404 (35%), Gaps = 56/404 (13%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           +    Q  +V+   +  + + GGQ  D G          L +  VQ++ +   ++   + 
Sbjct: 56  QVELPQSYDVILTDSVLFPDGGGQPCDHGVLIRRETNEELPVRVVQRRGDSCVMNLPCML 115

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           +        + L +D+  R     +HSA HLL   +       +      +T       +
Sbjct: 116 K----VGEDVQLRVDWDRRLDHMQHHSAQHLLTAVVEDPSFCGLPTVSWALTQPYCHIVL 171

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG---------------AAA 666
              K I    L+ IE++ N +IA+ +PV  R+ + ++   +                 + 
Sbjct: 172 PTGKRIEPEMLQRIEEHCNRVIARAVPVRCRVYSSKEEYENDLQREPEKNDDGGRLRGSR 231

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            +       +R++ +E  D        C GTHV++  ++ +L ++ + +    ++ +  I
Sbjct: 232 PIPPDVAGPIRIIDMEGID-----CCTCCGTHVTNLAQLQVLKLLHQETKGDTLK-LFFI 285

Query: 727 TGQRARSHLMGQDEKLKSLASFL-KVSQGN-VVGRVEE------IWEEYRKLQLIHAKRK 778
            G+R R        + + L   +  +   + V   + +      + +  + +     K +
Sbjct: 286 AGERVRRFFGDMYGRERELMKEMGGIRPEDFVSAAIRKGKDFVELEKRLKHMTQELMKLR 345

Query: 779 LQLNVEDLSCHKIADV--------NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-- 828
            +  + +                   + +   +VD+     + D L++   + + +    
Sbjct: 346 SEKLIAEAKQLSENGKGDSASHRPPVVVYRRDDVDADFFSGLRDELRQACPNCVGVFAWA 405

Query: 829 ----GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
                 +K  +  +++  TE +        LA +    L G GG
Sbjct: 406 MAPLTAAKTGQ-FMIVGPTESVE------VLAPVVCAALEGKGG 442


>gi|195163547|ref|XP_002022611.1| GL13126 [Drosophila persimilis]
 gi|194104603|gb|EDW26646.1| GL13126 [Drosophila persimilis]
          Length = 434

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 138/415 (33%), Gaps = 43/415 (10%)

Query: 502 VEEAVSGQ-----KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           V+ A  G+        VV + T  + E GGQ  D G   G  +R  +             
Sbjct: 31  VDVATGGEARPVRGFNVVCEDTILFPEGGGQPCDYGTINGQPVRRVLRKGN------IAV 84

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           H +           +  ++D+  R      HS  HL+            +        + 
Sbjct: 85  HFVESSSSFEEGAEVHQSLDWDRRLDHMQQHSGQHLITALFDREFKYDTTSWSL--GSNV 142

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDR 675
               +     I+   L  IE   N++I +  PV    +    D     A A  G   +  
Sbjct: 143 SHIQLNTPHLISRESLDLIERQANELIREGRPVSVVLVDPEVDEEFKDARAPRGLPKDHE 202

Query: 676 --VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
              RVV +E  +       +C GTHV+   ++  + ++    ++  I  +  + G+R   
Sbjct: 203 GLARVVRIEGIESN-----MCCGTHVTDLSQLQCIKLLYAEKVKTNIL-VHFVVGERVLR 256

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS----CH 789
            L    ++ + L + LK      +  V+++ +  +  +    +        +        
Sbjct: 257 KLGEVFQREQQLTTALKGGAQQHLELVQKLQQNVKGTRKSFLQLLKDFASAEAERLEDLS 316

Query: 790 KIADVNFMS-HIISEVDSKELKSVMDALQKKIQSGIIMLVGISK------EKKASVLIVV 842
           K     + S H    ++   + + +    +    GI   + +S+        K  +++  
Sbjct: 317 KAERPKYFSLHRRDGIEVDFIHTFL----RHAPEGIFYFLTVSEGGAAGSSGKGHLVLRG 372

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
              +++     ++     ++L  G G G+    Q    N  K  + I  + S  K
Sbjct: 373 DPAVVE-----EIGPKFLELLE-GKGNGKAGSFQGKINNLAKLPECIELLESHFK 421


>gi|195039566|ref|XP_001990905.1| GH12380 [Drosophila grimshawi]
 gi|193900663|gb|EDV99529.1| GH12380 [Drosophila grimshawi]
          Length = 433

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 127/393 (32%), Gaps = 48/393 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV + T  + E GGQ  D G   G  +R  +         +                ++ 
Sbjct: 47  VVCEDTILFPEGGGQPCDYGTINGQPVRSVLRKGSTAVHFV------ESSSSFEEGATVQ 100

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D+  R      HS  HL+            +       P      ++    I+   L
Sbjct: 101 QLVDWPRRLDHMQQHSGQHLITALFDREFKYDTTSWSL--GPSVSYIQLSTPHLISRESL 158

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE   ND+I +   V   +++ E A     A        D   +  V   +G    S 
Sbjct: 159 DLIERQANDLIREGRIVSVLLVDPEMAQDFQDARAPRGLPKDHEGLARVVRIEG--IESN 216

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           +C GTHV++  ++  + ++    +++ +  +  + G+R    L    ++ + L + LK  
Sbjct: 217 MCCGTHVTNLSQLQCIKLIYAEKVKSNVH-VHFVVGERCLRKLGEIFQREQQLTAALKCG 275

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-------FMSHIISEVD 805
               +  ++++ +  +  +    +        +    ++ +V        F  H    ++
Sbjct: 276 AHQHLELLQKLQQNVKSTRKSFVQLLKDFA--NAEAERLENVPKAMRPKYFALHRRDGIE 333

Query: 806 SK----ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA---VD--LA 856
                  L++            I   + +S+         ++   + + +     D  L 
Sbjct: 334 VDFTTTFLRNA--------PEEIFYFLTVSE--------GISVGSVAKGHMVLRGDPMLV 377

Query: 857 RLSAKV---LGGGGGGGRPHMAQSGGPNGNKAD 886
           +        L  G G G+ +  Q    N  K  
Sbjct: 378 QELGPQFLELLEGKGNGKENSFQGKINNLAKLQ 410


>gi|217077247|ref|YP_002334965.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|217037102|gb|ACJ75624.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 366

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 109/281 (38%), Gaps = 18/281 (6%)

Query: 503 EEAVSGQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           E      K+  +  ++PFY +  GGQLGD G          +  V  K   I+       
Sbjct: 7   EVLKEKGKIFAISSESPFYVDYKGGQLGDRGKI----GNASVLSVMSKNGKIYHEIDREV 62

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                      + ID  ++  +  +H+  H+L      +    +S  G  +  +    D+
Sbjct: 63  DLGEN-----DVEIDLNHQLFVRQHHTGQHILSAVFEELA--DISTVGFRMGFEYTTIDL 115

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                I    L  +E+ VN II + + V   ++ +E+         L  K    VR++ +
Sbjct: 116 NVP-YIVEELLDEVEERVNSIITECVDVQEILVEKEEVDRFPLRKKLSDKVEGMVRIIKI 174

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
              D      + CGG HV +TG+I LL I+    ++  + R+  + G +A  +     + 
Sbjct: 175 GEYD-----YSPCGGYHVKNTGQIGLLKILKTEKVKGELTRVYFVAGFKAMEYFRKYSKI 229

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           LK+++  L  S   V  +V  +  E ++          +L 
Sbjct: 230 LKNISVSLTSSIFEVEDKVRSLLSEVKEKSSRLENLAEKLA 270


>gi|194769724|ref|XP_001966951.1| GF21792 [Drosophila ananassae]
 gi|190622746|gb|EDV38270.1| GF21792 [Drosophila ananassae]
          Length = 451

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/408 (14%), Positives = 126/408 (30%), Gaps = 44/408 (10%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
              G+   + + G    V+ + T  + E GGQ  D G      +R  I         +  
Sbjct: 28  WTNGKGETKNLKG--FNVICEDTILFPEGGGQPCDYGTLDECPVRNVIRKGTTAVHFV-- 83

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
                          +   +D+  R      HS  HL+            +         
Sbjct: 84  ----EAPKTFEIGAEVAQVLDFPRRLDHMQQHSGQHLITALFDREFKYDTTSWSL--GSS 137

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR---EDAIASGAAALLGTKY 672
                ++    I+   L  IE   ND+I +   V   +++    ++   + A   L   +
Sbjct: 138 VSYIQLSTPHLISRESLDLIETQANDLIREGREVSVVLVDPEVAQEFQDARAPRGLPKDH 197

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
               RVV +E  +       +C GTHVS+  ++  + ++    ++  +  +  + G+R  
Sbjct: 198 EGLARVVRIEGIESN-----MCCGTHVSNLSQLQCIKLLYAEKVKTNVL-VYFVVGERVL 251

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L    ++ + L   LK      +  V+++ +  +  +             +    ++ 
Sbjct: 252 RKLGEVFQREQQLTQALKGGPNQHLELVQKLQQNVKGTRKSFQLLLKDFATAEAERLELM 311

Query: 793 DVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                   F  H    ++       ++   +    GI   + +S+         V+    
Sbjct: 312 PKKERPKHFSIHRRDGIEVD----FINTFLRLAPEGIFYFLTVSE--------GVSAGSS 359

Query: 848 DRFNAV-----DLARLSAKVLGG---GGGGGRPHMAQSGGPNGNKADQ 887
            + + V     +L             G G G+    Q    N  +  +
Sbjct: 360 AKGHLVLRGDPELVEKLGPEFMDLLEGKGNGKEGSFQGKINNLARLQE 407


>gi|198471548|ref|XP_001355657.2| GA10567 [Drosophila pseudoobscura pseudoobscura]
 gi|198145967|gb|EAL32716.2| GA10567 [Drosophila pseudoobscura pseudoobscura]
          Length = 434

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 141/415 (33%), Gaps = 43/415 (10%)

Query: 502 VEEAVSGQ-----KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           V+ A  G+        VV + T  + E GGQ  D G   G  +R  +             
Sbjct: 31  VDVATGGEARPVRGFNVVCEDTILFPEGGGQPCDYGTINGQPVRRVLRKGN------IAV 84

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           H +           +  ++D+  R      HS  HL+            +        + 
Sbjct: 85  HFVESSSSFEEGAEVHQSLDWDRRLDHMQQHSGQHLITALFDREFKYDTTSWSL--GSNV 142

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE---DAIASGAAALLGTKYN 673
               +     I+   L  IE   N++I +  PV   +++ E   +   + A   L   + 
Sbjct: 143 SHIQLNTPHLISRESLDLIERQANELIREGRPVSVVLVDPEVDEEFNDARAPRGLPKDHE 202

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
              RVV +E  +       +C GTHV+   ++  + ++    ++  I  +  + G+R   
Sbjct: 203 GLARVVRIEGIESN-----MCCGTHVTDLSQLQCIKLLYAEKVKTNIL-VHFVVGERVLR 256

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS----CH 789
            L    ++ + L + LK      +  V+++ +  +  +    +        +        
Sbjct: 257 KLGEVFQREQQLTTALKGGAQQHLELVQKLQQNVKGTRKSFLQLLKDFASAEAERLEDLS 316

Query: 790 KIADVNFMS-HIISEVDSKELKSVMDALQKKIQSGIIMLVGISK------EKKASVLIVV 842
           K     + S H    ++   + + +    +    GI   + +S+        K  +++  
Sbjct: 317 KAERPKYFSLHRRDGIEVDFIHTFL----RHAPEGIFYFLTVSEGGAAGSSGKGHLVLRG 372

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
              +++     ++     ++L  G G G+    Q    N  K  + I  + S  K
Sbjct: 373 DPAVVE-----EIGPKFLELLE-GKGNGKAGSFQGKINNLAKLPECIELLESHFK 421


>gi|310821145|ref|YP_003953503.1| threonyl/alanyl tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309394217|gb|ADO71676.1| Threonyl/alanyl tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 400

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 140/369 (37%), Gaps = 25/369 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           G +V  A       ++ D+T FY EAGGQ+ D G   G  +R    D         V   
Sbjct: 19  GRVVAHAAWNGAPSIILDRTAFYPEAGGQMADRGVLGGAVVRDVQVDD--AGLVHHVLEL 76

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV--SQNGSCITPDG 616
                +      L   ID   RR     H+  H+L  AL  +  +H   S+ G  +    
Sbjct: 77  SEGGALPEVGAELPGEIDRVRRRLHMALHTGQHMLSRALVDVANAHTVSSRLGETLCTID 136

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           +  DV     +   ++   E+ VN +I  ++ +       E+  A         K  + +
Sbjct: 137 VDLDV-----LDERKVAEAEEFVNAVIEDDVAIRAFFPTPEELAALPLRR--QPKVTENI 189

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVV ++  D      + CGGTH + + ++ ++ ++       G  R+    G+RARS L 
Sbjct: 190 RVVQIDGFD-----VSPCGGTHCTRSAQVGMIRVLGVER-NKGKGRVLFSAGRRARSELW 243

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIA 792
            +   L+ L+       G V   ++++  E  + +      + +L      E  S  + +
Sbjct: 244 AEAGTLRGLSRAFTCGPGEVPTSIDKLRRELTEAREALGAARARLAEHTAAELASALEQS 303

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
             + +  ++     + L+++   L  +    +++L G   E    ++   +      F  
Sbjct: 304 PEHRVVAVVEGASPESLRAIAARLTAR-PEAVVLLAGQGPEGLPVLIARGSG---ASFGC 359

Query: 853 VDLARLSAK 861
               +  A+
Sbjct: 360 GAFLKRLAE 368


>gi|260943063|ref|XP_002615830.1| hypothetical protein CLUG_04712 [Clavispora lusitaniae ATCC 42720]
 gi|238851120|gb|EEQ40584.1| hypothetical protein CLUG_04712 [Clavispora lusitaniae ATCC 42720]
          Length = 442

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 152/419 (36%), Gaps = 38/419 (9%)

Query: 497 QQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           ++ +  + A + +K   V F  T  + E GGQ  DTG  I             +     V
Sbjct: 40  KEKQGKKNAQAKEKLYAVEFKDTVLFPEGGGQPSDTGAIILPNETAIEVQQVLRQGLKAV 99

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H        +    ++ L +D+  R  +   H+  HL+           +      +   
Sbjct: 100 HVVPQ---PVEIGTNVTLKVDWDRRIDIMQQHTGQHLISAVF---DTYDLETLSWSMGDM 153

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYND 674
               ++   K +    L+ +   VND+I Q +P+     +     I +            
Sbjct: 154 INYIEL--PKKVDDDILEEVSQKVNDLILQAIPITVTTPDEHGGEIDTSHIPDDYDLSKG 211

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +R+V +   D        C GTH++ST ++  +  + +++IR G  R+  + G R    
Sbjct: 212 IIRIVKIGDLDAN-----PCCGTHLTSTSQVQGVSFLHQANIRGGHSRLHFVCGSRVSKL 266

Query: 735 LMGQDEKLKSLA-SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV----EDLSCH 789
           L    + LK  + S L  S   V  +V ++   Y+K Q   +    +L      E  +  
Sbjct: 267 LTSYHKILKDTSGSSLSCSIEEVSQKVSDLNMNYKKSQSRESSLLKELAKIRADEVFNIF 326

Query: 790 KIADVNFMSHIISEVDSKEL----KSVMDALQKKIQSGI-------IMLVGISKEKKASV 838
           K       +   S+  ++ L    K ++  +     SG+       I+L+  + + K+  
Sbjct: 327 KNKTATLATEYRSDNSAEYLTLFQKELLTLINGNKDSGVNLTDSCTIVLI--NGDYKSGT 384

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             +V    +    A ++     K+L    GGG+    Q       K +  +  V  +L+
Sbjct: 385 GGMVK---IMGPRAEEIQGELKKLLSNLKGGGKGASFQGKITRYEKGE--LESVLRYLE 438


>gi|294873445|ref|XP_002766631.1| alanyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239867663|gb|EEQ99348.1| alanyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 403

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 126/414 (30%), Gaps = 39/414 (9%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G K  V  DQT  Y E GGQ  DTG      +     + + +                 
Sbjct: 3   KGSKFVVTLDQTLLYPEGGGQPSDTGRIGNAKVLYVNKNSEGEVYHYVDSKVE------- 55

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALS---------TILGSHVSQNGSCITPDGL 617
               + +T+D+  R   +  HS  HL+                           +     
Sbjct: 56  VGSEVAVTLDWDRRWDNTQQHSGQHLISALCEHAEIFPEFGKTDSWEFGNESCSVDIGPC 115

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+        + +K++E   N  I ++  V  R M R +            +     +
Sbjct: 116 NLDLIPQGETLESRVKALEKACNQAIREHRTVFNRQMKRSELEDENGNRDPMLRSALPKK 175

Query: 678 VVSVEYEDGGVHSSA--LCGGTHVSSTGEIMLLYIVSESSIRAG-IRRIEAITGQRARSH 734
           V    +    +       CGGTHV +  E+  + I+  S   +  I     + GQR    
Sbjct: 176 VKGDVFRIVEIDGIEKNACGGTHVENLSELQCVKIIGHSLKASTQIVTFTFLIGQRVLDR 235

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV--EDLSCHKIA 792
           L     +  ++ + L   +  +   V++  ++             +L          K +
Sbjct: 236 LEECSNREAAMVNDLSCKREKLPELVQQRLQQLTVANRQVKALTDELVQFLASDLLEKAS 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
               +     + +S  L  +  AL +KI+        +    KA +L   T  LL     
Sbjct: 296 GRPVVGA-FRDCESPFLHLLEKALSEKIKE-------MEGAPKAILLCCPTAFLLSDCQE 347

Query: 853 V-------DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ-AIAGVASFLKK 898
                   ++     +  G  G GG+  + Q  G +     +         +++
Sbjct: 348 GYPLLANKEMLSSLLEEFGAKGAGGKKPVWQ--GKSMTGIKERNFKKAVGIIEE 399


>gi|301789379|ref|XP_002930107.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA editing protein
           Aarsd1-like [Ailuropoda melanoleuca]
          Length = 599

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 137/390 (35%), Gaps = 29/390 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV + T  + E GGQ  D G      +        +             +  L     
Sbjct: 228 FHVVLEDTLLFPEGGGQPDDRGTINDISVLRVTRRGAQAD--------HFTQTPLAPGTE 279

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +             ++     +T  
Sbjct: 280 VQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWEL--GRVRSVIELDSPS-VTVE 336

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN+ I   LPV+ + ++ +D          L   +   VRVV++E  D    
Sbjct: 337 QVAAIEQSVNEKIRSRLPVIVQELSLDDPEVEQVRGRGLPDDHAGPVRVVTIESIDAN-- 394

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  + G R    L       K+L + L
Sbjct: 395 ---MCCGTHVSNLSDLQVIKILGVEKGKKNKTNLAFLAGNRVLKWLERSHGTEKALTALL 451

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKE 808
           K         V ++    + LQ  +      L V    S     D   +   +   +   
Sbjct: 452 KCGAEEHAEAVRKLQNSTKLLQKNNLNLLRDLAVHVAHSLRNSPDWGGVV-TLHRKEGDS 510

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
               M+ +  +I S   +L     ++K +   L+    + ++      L    A+VL G 
Sbjct: 511 --EFMNIIANEIGSEETLLFLTVGDEKGAGLFLLAGPAEAVE-----TLGPRVAEVLEGK 563

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G G +    Q      ++  +  A +  ++
Sbjct: 564 GAGKKGRF-QGKATRMSRRAEVRALLQDYI 592


>gi|297701048|ref|XP_002827539.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like, partial [Pongo
           abelii]
          Length = 307

 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 111/295 (37%), Gaps = 31/295 (10%)

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYN 673
                ++     +T+ ++ +IE +VN+ I   LPV  R ++ +D          L   + 
Sbjct: 24  FRSAIELDTPS-MTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVRGRGLPDDHA 82

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             +RVVS++  D       +C GTHVS+  ++ ++ I+     +     +  + G R   
Sbjct: 83  GPIRVVSIKGVDSN-----MCCGTHVSNLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLK 137

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-- 791
            +       K+L + LK    + V  V+++    + LQ +    +  LN+       I  
Sbjct: 138 WMERSHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKLPYPFQNNLNLLRDLAVHIAR 197

Query: 792 --------ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIV 841
                     V  +     +         M+ +  +I S   +L     ++K +   L+ 
Sbjct: 198 RLRNSPDWGGVVVLHRKEGDS------EFMNIIANEIGSEETLLFLTVGDEKGAGLFLLA 251

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                ++      L    A+VL G G G +    Q      ++  +A A +  ++
Sbjct: 252 GPPASVE-----TLGPRVAEVLEGKGAGKKGRF-QGKATKMSRRMEAQALLQDYI 300


>gi|2281029|dbj|BAA21554.1| alanyl t-RNA synthetase [Escherichia coli]
          Length = 78

 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S II+L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 1   STIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 58

Query: 882 GNKADQAIAGVASFL 896
                 A+A V  ++
Sbjct: 59  AAALPAALASVKGWV 73


>gi|283768510|ref|ZP_06341422.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bulleidia extructa W1219]
 gi|283104902|gb|EFC06274.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bulleidia extructa W1219]
          Length = 369

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 121/398 (30%), Gaps = 38/398 (9%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+       ++    F++T FY + GG L D G   G  +     D  +          +
Sbjct: 10  ELKTTIKEEKEGYYQFEETIFYGDKGGMLADVGTINGMKVTDLKYDENE---------VL 60

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
             +        + + +D + R   +   +  H +          ++   G          
Sbjct: 61  WHKVDGILTDPIEMKVDRETRYLNTSVQTLFHAMDGYYRRKKDKYIIAIGVQAMNQWYEV 120

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
                      E    E+  N     +  +   +      I       L  + +D VR+V
Sbjct: 121 ----------NETVDEEELKNIQAYMDKVIWDDVPVEFSYIKGKDYPDLRYQGHDFVRMV 170

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            V   D        CG  HV+ T EI    ++       G  R+    G   +     + 
Sbjct: 171 KVGEYD-----KQPCGTLHVNHTSEIGSAVVLGVEKTSRGT-RVLCTVGPATKKRFQAEH 224

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           + L   +    V    +  R+E++  + ++        K ++   +L   + +D   +  
Sbjct: 225 QYLLEASRQAGVKGSELKERIEKLQTDLKEKNKSEQVWKEKVLAFELERVRTSDEKVI-- 282

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
            I    SKEL     +L   + +G+          +  V +   E       A +  +  
Sbjct: 283 EIDGFTSKEL---ASSLNSFLNNGVEKAFVSKVNGEVHVALGSGEG-----QAREYLKKI 334

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            + L    GGG P +           ++ +  +   L 
Sbjct: 335 QESLNV-RGGGSPKLV--SFQCDESIEKVLNKLKEVLN 369


>gi|328880598|emb|CCA53837.1| Alanyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 192

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 11/202 (5%)

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE 265
           M+  + +      LP+ ++DTG+GLER+A++LQ K++ +D D+F    +    +      
Sbjct: 2   MRHRRLDDGSLVPLPQRNVDTGLGLERLASLLQGKSSVFDCDVFDPWRRLLPGL-----W 56

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
                + R++ DHLRS+  +I DG+ P   GRGYVLRR++RR +           L+   
Sbjct: 57  PLEETSLRLVSDHLRSAVVVIGDGVRPGATGRGYVLRRLIRRVLTVLWRDDPRRGLVDLP 116

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
              +   +   +      +  +   L        +   R L     VL+       L  +
Sbjct: 117 SELVEHTL--DHFRQDTGQDEVRRVLL----DEERRFRRLLERGRQVLARPRFQRPLGEE 170

Query: 386 VAFKLYDTHGLPLDIMQDILCA 407
               L+DTHGLP D++  +   
Sbjct: 171 DLHYLHDTHGLPRDLVLSLREE 192


>gi|86359908|ref|YP_471798.1| class II aminoacyl t-RNA synthetase domain-containing protein
           [Rhizobium etli CFN 42]
 gi|86284010|gb|ABC93071.1| putative class II aminoacyl t-RNA synthetase domain protein
           [Rhizobium etli CFN 42]
          Length = 245

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 88/291 (30%), Gaps = 64/291 (21%)

Query: 43  MVPFKNIFTGQEKPVYQ-AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSF--- 98
           M  +K +F+    P +   V   Q C+R G    DLD +G    H   F MLG FSF   
Sbjct: 1   MQQYKALFS---DPSFSGTVANSQACLRMG----DLDEIG-DGTHFLHFTMLGLFSFREM 52

Query: 99  --GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156
             G      AI   W        L     ++T++ +         + + L   ++  +  
Sbjct: 53  TVGD-----AIDF-WLAFLGTLGLAPD--HVTMHPDRL------IEWTPLYDGRVPIVAD 98

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            +  WS       G C+E F+  G                 IEI N+V            
Sbjct: 99  AECIWSDGSI--SGYCTE-FYKHG-----------------IEIGNIV------NPLGS- 131

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV 276
                  ID G G ER+  ++         D  + L +    +    Y   N     V+ 
Sbjct: 132 ------CIDVGFGAERLDMIVNGTPP---ADALETLRETVMTIVESGYRPGNKEQGYVLR 182

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
             LR    +      P  +      +R+  + +                  
Sbjct: 183 KLLRRIHKMGGTLEHPFFQKEVERQKRLGAKYLRLRDRYCDKGADWWFDTH 233


>gi|150020809|ref|YP_001306163.1| threonyl/alanyl tRNA synthetase, SAD [Thermosipho melanesiensis
           BI429]
 gi|149793330|gb|ABR30778.1| Threonyl/alanyl tRNA synthetase, SAD [Thermosipho melanesiensis
           BI429]
          Length = 363

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 116/284 (40%), Gaps = 19/284 (6%)

Query: 501 IVEEA-VSGQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            VE+    G +   +   +PFY +  GGQLGD G      +        K    I     
Sbjct: 4   FVEKVEKEGDRYYAISSNSPFYVDYKGGQLGDRGYIGNSRVLRVFEKDGKIYHEI----- 58

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                    E S  + ID ++R  +  +H+A H+L  AL  I    ++  G  +  +   
Sbjct: 59  ----DREIEEGSYEIEIDEEHRNFVKAHHTAQHILSAALHEIAE--INTVGFRMGFEYTT 112

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+     +    LK  E+  ND++ + + V   +++RED         L  K   +VR+
Sbjct: 113 VDLDVP-FVNDMVLKEAEELSNDVVKRCINVEEVLVDREDVGRFKLRKPLSEKVEGKVRI 171

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           + +   D      + CGG HV +TGEI ++ ++ +  I+  + R+  +    A  +    
Sbjct: 172 IKIGEFD-----YSPCGGFHVKNTGEIGVIKVLKQEKIKGNLTRLYFVASSLALKYFWKY 226

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +  L++++  L  S   +  +V +  +E +       K   +L 
Sbjct: 227 NNILRNISKTLTSSISEIEEKVSKTLDELKMCATKVDKLSSELA 270


>gi|255728569|ref|XP_002549210.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240133526|gb|EER33082.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 439

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 143/405 (35%), Gaps = 43/405 (10%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  V F  T  + E GGQ  D G          I       + +   H + E   +    
Sbjct: 55  EFGVEFQDTILFPEGGGQPYDKGTITILPENKVIEVKSVLRDKLKAVHLVDEM--IEPGT 112

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + L +D+  R  +   H+  HLL           +      +  +    ++   + I  
Sbjct: 113 EVTLNVDWARRIDIMQQHTGQHLLSAVF---DTFGLETLSWSMGEEINYIEL--PEKIND 167

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDG 686
             L  +++ VN +I + +     ++  +        + L   Y+     +R+V +   D 
Sbjct: 168 ELLGEVQERVNQLIVEGIK--ITVVTPDQHGHEVDVSHLPDDYDLSKGIIRIVKIGELDA 225

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  C GTH++ST +I  + ++ ++ IR G  R+    G R  + L  + E L+++A
Sbjct: 226 N-----PCCGTHLTSTSQIQSIALLHQAPIRGGHSRLFFTCGARVANVLRKEHEILRNVA 280

Query: 747 -SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-----ADVNFMSHI 800
            + L  +   V  +VE +    RK          +L    L   KI              
Sbjct: 281 TNQLSCAIEAVGEKVELLNLNTRKSNSTINALLKELAG--LEASKIYQNFKDGKKVAYVY 338

Query: 801 ISEVD------SKELKSVM---DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
            +++       +KEL +++   D+     ++  ++L+  +     S+ I   E       
Sbjct: 339 RTDLPDYLTAVNKELLNLINGDDSSVDLSKNQTLVLLHGAPSNGGSIKITGPE------- 391

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           A  +       L    GGG+    Q       K +  +  V  +L
Sbjct: 392 ASSIQTELKSKLTNLKGGGKGTSFQGKITKFEKGE--LESVLKYL 434


>gi|225712852|gb|ACO12272.1| Alanyl-tRNA synthetase domain-containing protein 1-B
           [Lepeophtheirus salmonis]
          Length = 416

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/390 (16%), Positives = 139/390 (35%), Gaps = 32/390 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + +IV  + +   ++V  + T  + E GGQ  DTG  IG    + +    +KA       
Sbjct: 14  ETKIVALSENEPYLKVELEDTILFPEGGGQNYDTG-FIGSHRVVNVFREGRKAIHYVEVS 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL------STILGSHVSQNGSC 611
           +      L     + L +D+  R      H+  HLL   L       T        +   
Sbjct: 73  SKENDAPLVPNDLVRLKVDWDRRFDNMQQHTGQHLLSAVLETKLGLKTKSWWMAENSIEE 132

Query: 612 ITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQNLP--VVTRIMNREDAIASGAAALL 668
           +    +  + +   K  T+++++ +E   N  I   LP  + T  +   +   + +  L 
Sbjct: 133 VGQSYIELELMDGHKVPTNSDIQVVEQEANQYIRDQLPVSITTHKLGDPELEKAYSRGLP 192

Query: 669 GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR-RIEAI 726
                D  +R+V++           +C GTHV +   + ++  +     +      +  I
Sbjct: 193 EDLPKDALIRIVNILE------DRNMCCGTHVQNLAHLQIIKTLQFQKSKKTTEFVLYFI 246

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            G+R   ++     +   L + LK    +    +E+     +  + I++    +L +   
Sbjct: 247 VGKRVERYIDICFNRELQLTNLLKNRPLDHYSLIEKALTSCKNTKKINSNLLKELAL--F 304

Query: 787 SCHKIADV----NFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGISKE--KKASVL 839
              K+ ++     ++     E  S+ + + +  L      +  I L+  + E      + 
Sbjct: 305 EAEKVKNMDPLPKYIIDHRKEGSSEYIGTFIKELTSDKGLNLFIFLIVGNGESGNPYQLA 364

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           +      + +     L     + L G GGG
Sbjct: 365 LFGDPQDIKK-----LGSKICEYLDGKGGG 389


>gi|218679049|ref|ZP_03526946.1| alanyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 79

 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 60/73 (82%)

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           I SGI+ L+G+S++ KAS ++ VT DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GG
Sbjct: 1   IGSGIVTLIGVSEDGKASAVVAVTPDLVDRFSAVDLVRIASAALGGKGGGGRPDMAQAGG 60

Query: 880 PNGNKADQAIAGV 892
           P+G+KAD+AI  V
Sbjct: 61  PDGSKADEAIEAV 73


>gi|2065021|emb|CAA73145.1| alanyl t-RNA synthetase [Arabidopsis thaliana]
          Length = 251

 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 31/245 (12%)

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
           E  +  + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L      
Sbjct: 1   ENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLL 60

Query: 742 LKSLA--------------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKR 777
            + +               S LK              ++  ++  +  E RK Q   A++
Sbjct: 61  EREVEDASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQ 120

Query: 778 KLQLNVE----DLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            L+ +V+               F    +   +D+  ++  +  + +K    I++      
Sbjct: 121 NLKKSVKLATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDES 180

Query: 833 EKKASVLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             KA V   V E  D     +  +    +   L G  G G+  +A   G +  +   A+ 
Sbjct: 181 TNKAVVCAGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDAFQVQAALD 240

Query: 891 GVASF 895
             +SF
Sbjct: 241 MASSF 245


>gi|310778595|ref|YP_003966928.1| Threonyl/alanyl tRNA synthetase SAD [Ilyobacter polytropus DSM
           2926]
 gi|309747918|gb|ADO82580.1| Threonyl/alanyl tRNA synthetase SAD [Ilyobacter polytropus DSM
           2926]
          Length = 372

 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 105/246 (42%), Gaps = 14/246 (5%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           IDY  R+ + + H+A HL            ++  G  +  +    D+  SK +T   +K 
Sbjct: 68  IDYDRRKDIEVQHTAQHLFSAIA--YNEYSLNTVGFRMAEEYSTVDL-DSKDLTEENIKG 124

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           IE  VN+ I  ++PV T I+ RE+ +   G    +  K    VR+V +   D        
Sbjct: 125 IEKMVNNAIKSSIPVETSIVKREEVMTLEGMRKTVSEKVTGDVRIVKIGDLDTN-----A 179

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG HV++  E+ +  I+S   I+    R   I G RA     G+++ +  L   L   +
Sbjct: 180 CGGFHVNNICELQIFKILSWEKIKGNYTRFYYIAGNRAIEDYYGKNKLIGKLCQTLSCRE 239

Query: 754 GNVVGRVEEIWEEYRKLQLIH---AKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKE 808
             ++  ++++  + +  +L      +   ++  +DL  +   I     + +  + + S  
Sbjct: 240 NEIITMIDKMVSDKKSSELELRSITQNYAKILAKDLMNNSENINGKKLIFYPENSLVSNF 299

Query: 809 LKSVMD 814
           L   +D
Sbjct: 300 LPKYID 305


>gi|50426755|ref|XP_461975.1| DEHA2G09856p [Debaryomyces hansenii CBS767]
 gi|49657645|emb|CAG90445.1| DEHA2G09856p [Debaryomyces hansenii]
          Length = 448

 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 24/324 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
             +   V    T  + E GGQ  DTG  I          +  + +   +H          
Sbjct: 56  EKELYAVELADTILFPEGGGQPFDTGSIILPNDNRLPVQMVLRNQLTALHIVPSPIDP-- 113

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L +D+  R  L   H+  HLL      +    +      +       ++   + 
Sbjct: 114 -GTKVTLQVDWDRRIDLMQQHTGQHLLSAV---LDTYDLETLSWSLNEMINYIEL--PRK 167

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           ++   ++ I   VND I + LP   +++  ++  A    + +   Y+    ++ +     
Sbjct: 168 VSDEIVEEINKKVNDYILEGLP--IKVVTPDEHGAEIDTSHIPDDYDTSKGIIRIVKI-- 223

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G   S  C GTH+SST +I  + ++ + ++R G  R+  I G R   +L+ Q   LK+++
Sbjct: 224 GELDSNPCCGTHLSSTSQIQAISLLHQVNVRGGNSRLHFICGSRVYKYLIKQHNILKAVS 283

Query: 747 -SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHI 800
              L      V  +V  +   Y+K     +    +L   +      +  +  D     + 
Sbjct: 284 GGQLSCQIEEVAEKVGVLNLNYKKSTSRESNLLKELAGIEANRTFNAFKEKNDKTEFIYR 343

Query: 801 ISEVD------SKELKSVMDALQK 818
                       KEL +++   + 
Sbjct: 344 SDNSPEYITAFQKELSTLIKDNKD 367


>gi|172056520|ref|YP_001812980.1| threonyl/alanyl tRNA synthetase SAD [Exiguobacterium sibiricum
           255-15]
 gi|171989041|gb|ACB59963.1| Threonyl/alanyl tRNA synthetase SAD [Exiguobacterium sibiricum
           255-15]
          Length = 383

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 130/377 (34%), Gaps = 30/377 (7%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           IV      Q   V  +Q+ FY E+GGQ  D G   G  +             +       
Sbjct: 16  IVTGTKEEQGYWVRLEQSYFYPESGGQPADRGTLNGVSV---------LDVQLQEGDVWH 66

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                  E  +   +D   R   +  H+A H++   L            +      L  D
Sbjct: 67  LLDSPLLENEVQGEVDDVIRTDHAAQHTAQHVISAILQDEFQIKTVSFRTGTEESTLDLD 126

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +             +E+ +  +I  NL +       E+A+          +  +++RVV 
Sbjct: 127 L---GDWDETLQSRLEERLRTVIQANLLITATEYTEEEALQLPLRKT--PQVTEKIRVVQ 181

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   D      + CGGTH++ST E+ L+       +R G  R+  +   RA   L  +  
Sbjct: 182 IGELD-----YSACGGTHLASTSELELILFTGLEKVR-GNIRLAYVAKDRAFRLLTTERR 235

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            L   A  +   +  V   VE++ +E  +L     + +       L      D   ++  
Sbjct: 236 VLTETARAVSAKKNQVHLVVEDLKQEQVRLNRQIGQAEDLHVKTVLKQLLATDEPVLTVR 295

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
             + D +  + ++ AL +  ++G +     ++  K   +           +    A+   
Sbjct: 296 HDQEDVRFSEKLLKALAETGRTGFV----WNENAKKLFMCSAGS-----IHLGKFAKTHL 346

Query: 861 KVLGGGGGGGRPHMAQS 877
           K    G GGG  + AQ+
Sbjct: 347 KQFN-GRGGGSENNAQA 362


>gi|18543305|ref|NP_570062.1| CG10802 [Drosophila melanogaster]
 gi|17862184|gb|AAL39569.1| LD13611p [Drosophila melanogaster]
 gi|22831622|gb|AAF45874.2| CG10802 [Drosophila melanogaster]
 gi|220943032|gb|ACL84059.1| CG10802-PA [synthetic construct]
          Length = 436

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/428 (14%), Positives = 143/428 (33%), Gaps = 38/428 (8%)

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K        +    + S   A +   +   +    +   V+ + T  + E GGQ  D G 
Sbjct: 4   KCQEDSFLKEFKTKIVSSEFATLDWTDPSGKVEKLKGFNVICEDTILFPEGGGQPCDYGT 63

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G  ++            +              +  ++LT+DYQ R      HS  HL+
Sbjct: 64  LGGFPVKNVQRKGSTAVHFV------ESPTSFEQDAEVLLTLDYQRRLDHMQQHSGQHLI 117

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
                       +              ++    I+   L  IE   ND+I +   V   +
Sbjct: 118 TALFDREFKYDTTSWSL--GSTVSYIQLSTPHLISRESLDLIERQANDLIREGREVTVLL 175

Query: 654 MNR---EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           ++    ++   + A   L   +    RVV +E  +       +C GTHV++  ++  + +
Sbjct: 176 VDPEVAQEFQDARAPRGLPKDHEGLARVVRIEGIESN-----MCCGTHVTNLSQLQCIKL 230

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +    ++A +  +  + G+R    L    ++ + L   LK   G  +  V+++ +  +  
Sbjct: 231 LYAEKVKANVL-VHFVVGERVLVKLGEVFQREQQLTQALKGGPGQHLELVQKLQQNVKGS 289

Query: 771 QLIHAKRKLQLNVEDLS----CHKIADVNFMS-HIISEVDSKELKSVMDALQKKIQSGII 825
           +    +   +    +        K     + S H    ++       ++   +    GI 
Sbjct: 290 RKYFQQLLKRYATAEAERLCDLPKKDRPKYFSLHRRDGIEVD----FINTFLRAAPEGIF 345

Query: 826 MLVGISK------EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             + +S+        K  +++    +++       L     ++L  G G G+    Q   
Sbjct: 346 YFLTVSESVFAGSSAKGHLVLRGDPEIV-----GKLGPQFMEILE-GKGNGKEDNFQGKI 399

Query: 880 PNGNKADQ 887
            N  +  +
Sbjct: 400 NNLARLQE 407


>gi|320528277|ref|ZP_08029439.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Solobacterium moorei F0204]
 gi|320131191|gb|EFW23759.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Solobacterium moorei F0204]
          Length = 369

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 119/393 (30%), Gaps = 38/393 (9%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
              + +     F +T FY E GG  GD G   G  +     +         ++H +    
Sbjct: 15  TIKTEKDGYYTFAETVFYGEKGGMPGDKGTINGLEVIDLKWEDD------VLYHKVDGTL 68

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                M +       N    S  H            I+   V+       P+   ++V  
Sbjct: 69  QNPIHMEVDKETRIINTTVQSAYHLLDGYYGKMGLYIVAIGVTS------PENQWYEVNS 122

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                    +  +   + ++       T     E      A        +D VRVV+   
Sbjct: 123 KDLDEKHLQEVQDFMNDTLLQDIPTEFTYYKGSEYPNPKYAN-------HDEVRVVTFGD 175

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            D     S  CG  HV++  +I    I+       G  RI           L      ++
Sbjct: 176 ID-----SQPCGTPHVNNVNQIGSFIILGSEKTSRGT-RIYTTVSWATNIKLKKYYNLIQ 229

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
            L   L   + +++  ++ +    +  +    + + +L    +        N +   +  
Sbjct: 230 ELRKILNAKEDDILENIQTLRNTNKIYKKQIEELQKELTAYKVKDILQMKANVL---VDV 286

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           VD  +L++V  AL  ++ S  I++         S++            A D+     + L
Sbjct: 287 VDVSQLRTVSQALLNQVSSTKILITSSDDINDFSII-------SPEGKARDIYAAIEESL 339

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               GGG P +  +         + I  +   +
Sbjct: 340 E-ASGGGSPKIVTARSSKPK--QEIIELLQKSI 369


>gi|293402007|ref|ZP_06646147.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304665|gb|EFE45914.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 399

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 132/387 (34%), Gaps = 36/387 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             ++++              T FY E+GG   D G      +             + V  
Sbjct: 28  NTKVLKVEEENGLYWHACKDTIFYVESGGMASDIGMMDNHMVLGLKKKDGYVWHLLDVK- 86

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                     E ++ ++I+   R +    H+A HL+   LS +   H   +      + +
Sbjct: 87  ---------LEGAVFMSINLHERFRKCQIHTAQHLISAVLSNVYKVHTLAHHVGDEENDV 137

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            FD        + E   ++   N +I  +L V      R +A+A            D +R
Sbjct: 138 EFDFPDFNEKMAIE---LQVLCNGLIRDDLNVSILYPTRAEALAHL---PQKDVMRDDLR 191

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +   D       LCG  HV S   + LL+I        G + I+ + G +    +  
Sbjct: 192 IVRIGALD-----YTLCGCMHVPSLRYLQLLFIRGFEKTNKGYK-IKYLVGDQLLDCVER 245

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA--DVN 795
           + + L  ++  L +S   +   V  I  E RKL    +  K +     +   ++   +  
Sbjct: 246 RYKVLDEVSHSLAISHLYLDTGVGRIINETRKLHNEVSDWKQK--YYKMLAKELGQREEQ 303

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV-- 853
            +     ++D+K L  +   L    Q  +I L+G   +  A +++           AV  
Sbjct: 304 LIIEQFEDIDNKSLVKMASFLCDTYQKAVI-LIGKMYDN-AHIVVAANPGNGLDVKAVYE 361

Query: 854 ------DLARLSAKVLGGGGGGGRPHM 874
                  L       +  GGG  +  M
Sbjct: 362 MLADTYHLKGNVGSSIAQGGGLYKEDM 388


>gi|84000115|ref|NP_001033162.1| alanyl-tRNA editing protein Aarsd1 isoform 1 [Bos taurus]
 gi|122138793|sp|Q32LK1|AASD1_BOVIN RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein 1
 gi|81674607|gb|AAI09538.1| Alanyl-tRNA synthetase domain containing 1 [Bos taurus]
          Length = 444

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/421 (16%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VV + T  + E GGQ  D G      +        +             +  L     
Sbjct: 41  FQVVLEDTLLFPEGGGQPDDRGTINDISVLRVTRRGTQAD--------HFTQTPLTPGTE 92

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +             ++     +T+ 
Sbjct: 93  VQVRVDWERRFDHMQQHSGQHLITAVADDLFGLKTTSWEL--GRLRSVIELDSPT-VTAE 149

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN+ I   LPV  R ++ +D          L   +   +RVV++E  D    
Sbjct: 150 QVAAIERSVNEKIRDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIESVDSN-- 207

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  + G R    +       K+L + L
Sbjct: 208 ---MCCGTHVSNLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLKWMERSHGIEKALTALL 264

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-------------EDLSCHKIAD--- 793
           K    + V  V+++    + LQ  +      L V               ++ H+      
Sbjct: 265 KCGAEDHVEAVKKLQNSSKLLQKNNLNLLRDLAVHIAHSLRNSPDWGGVITLHRKGGGEA 324

Query: 794 ----------------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
                            + +  +    D       M+ +  +I S   +L     ++K +
Sbjct: 325 SWRSWAACNFPAPFAAWSQVCALCFRKDGDS--EFMNIIANEIGSEETLLFLTVGDEKGA 382

Query: 838 --VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
              L+    + ++      L    ++VL G G G +    Q      ++  +  A +  +
Sbjct: 383 GLFLLAGPAEAVE-----TLGPRVSEVLEGKGAGKKGRF-QGKATKMSRRAEVQALLQDY 436

Query: 896 L 896
           +
Sbjct: 437 I 437


>gi|296476301|gb|DAA18416.1| alanyl-tRNA synthetase domain-containing protein 1 isoform 1 [Bos
           taurus]
          Length = 444

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 144/421 (34%), Gaps = 59/421 (14%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VV + T  + E GGQ  D G      +        +             +  L     
Sbjct: 41  FQVVLEDTLLFPEGGGQPDDRGTINDISVLRVTRRGTQAD--------HFTQTPLTPGTE 92

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +             ++     +T+ 
Sbjct: 93  VQVRVDWERRFDHMQQHSGQHLITAVADDLFGLKTTSWEL--GRLRSVIELDSPT-VTAE 149

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN+ I   LPV  R ++ +D          L   +   +RVV+++  D    
Sbjct: 150 QVAAIERSVNEKIRDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIQSVDSN-- 207

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++ ++ I+     +     +  + G R    +       K+L + L
Sbjct: 208 ---MCCGTHVSNLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLKWMERSHGIEKALTALL 264

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-------------EDLSCHKIAD--- 793
           K    + V  V+++    + LQ  +      L V               ++ H+      
Sbjct: 265 KCGAEDHVEAVKKLQNSSKLLQKNNLNLLRDLAVHIAHSLRNSPDWGGVITLHRKGGGEA 324

Query: 794 ----------------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
                            + +  +    D       M+ +  +I S   +L     ++K +
Sbjct: 325 SWRSWAACNFPAPFAAWSQVCALCFRKDGDS--EFMNIIANEIGSEETLLFLTVGDEKGA 382

Query: 838 --VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
              L+    + ++      L    ++VL G G G +    Q      ++  +  A +  +
Sbjct: 383 GLFLLAGPAEAVE-----TLGPRVSEVLEGKGAGKKGRF-QGKATKMSRRAEVQALLQDY 436

Query: 896 L 896
           +
Sbjct: 437 I 437


>gi|195477347|ref|XP_002100173.1| GE16301 [Drosophila yakuba]
 gi|194187697|gb|EDX01281.1| GE16301 [Drosophila yakuba]
          Length = 436

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 140/427 (32%), Gaps = 36/427 (8%)

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K             + S   A +   +   +    +   V+ + T  + E GGQ  D G 
Sbjct: 4   KCQEDSFLKQFKTKIVSSEFATIDWTDPSGKVEKLKGFNVICENTILFPEGGGQPCDYGT 63

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G  ++            +    +  +         ++LT+DYQ R      HS  HL+
Sbjct: 64  LGGFPVKNVQRKGTTAVHFVESSTSFEQDAE------VLLTLDYQRRLDHMQQHSGQHLI 117

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
                       +              ++    I+   L  IE   ND+I +   V   +
Sbjct: 118 TALFDREFKYDTTSWSL--GSSVSYIQLSTPHLISRESLDLIERQANDLIREGREVTVLL 175

Query: 654 MNR---EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           ++    ++   + A   L   +    RVV +E  +       +C GTHV++  ++  + +
Sbjct: 176 VDPEVAQEFQDARAPRGLPKDHEGLARVVRIEGIESN-----MCCGTHVTNISQLQCIKL 230

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +    ++  +  +  + G+R  + L    ++   L   LK   G  +  V+++ +  +  
Sbjct: 231 LYAEKVKTNVL-VHFVVGERVLAKLGEVFQRELQLTQALKGGPGQHLELVQKLQQNVKGS 289

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN-------FMSHIISEVDSKELKSVMDALQKKIQSG 823
           +    +        +    ++AD+        F  H    ++       ++   +    G
Sbjct: 290 RKYFQQLLKDYATAE--AERLADLPKKDRPKYFSLHRRDGIEVD----FINTFLRLAPEG 343

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV---LGGGGGGGRPHMAQSGGP 880
           I   + +S+    S        L+ R +A ++          +  G G G     Q    
Sbjct: 344 IFYFLTVSEG--VSAGSGAKGHLVLRGDA-EIVGKLGPQFVEILEGKGNGNEGSFQGKIN 400

Query: 881 NGNKADQ 887
           N  +   
Sbjct: 401 NLARLQD 407


>gi|289450372|ref|YP_003474769.1| threonine/alanine tRNA ligase second additional domain-containing
           protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184919|gb|ADC91344.1| threonine/alanine tRNA ligase second additional domain protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 535

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/406 (14%), Positives = 116/406 (28%), Gaps = 57/406 (14%)

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
               +    +      +                       F+    V         ++ L
Sbjct: 87  CSTDSSCSYDRDNAPANGSDCEKLDPAENDLTTAYLLPQSFLTELGVTSEKSLLGRAVDL 146

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID+Q R      HSA HL                G  ++   +  D+   K +   +L+
Sbjct: 147 EIDWQRRYDFMQQHSAEHLFSGLAKR--EFGCDNVGFHLSETVMTMDLN--KNLGEKDLQ 202

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +E   N I+ +       +    D I              +VR++ +   D        
Sbjct: 203 KLERAANAIVWERRATKATVYPSVDVIEIDFRQK--KALPGKVRILEIPGAD-----CCA 255

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           C G HV++T EI ++ ++S    R GI R+    GQR   HL  + E L  +      + 
Sbjct: 256 CCGLHVANTVEIGMVKVLSAEKHRGGI-RVFLAAGQRLYDHLSREHEILAEICRQYSANL 314

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC------------------------H 789
            N+  ++  +  +    +    + K +                                +
Sbjct: 315 TNLKDKLAAVAIKGETAEKQLVQIKERELETLAQVSRRQAVAVLRAAAAEARSVVGETTN 374

Query: 790 KIADVNFMSHII----------------SEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           ++ +      ++                + V   +L+  ++           +L G   +
Sbjct: 375 EVVNEKPRIFLLTRRGSGGSCGAAVILPTGVAPGDLRRAINIFSAAGFE--FVLAGCHPD 432

Query: 834 KKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +  V  +     D   + +  +  +   K      GGGR    Q 
Sbjct: 433 AQTLVYSIAGGNGDATAKIDFTEW-QKVLKRRFDAKGGGRADYVQG 477


>gi|195134891|ref|XP_002011870.1| GI14436 [Drosophila mojavensis]
 gi|193909124|gb|EDW07991.1| GI14436 [Drosophila mojavensis]
          Length = 431

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 17/278 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ + T  + E GGQ  D G   G  +R  +         +                 + 
Sbjct: 45  VICENTILFPEGGGQPCDYGTINGQPVRSVVRKGSTAVHFV------ESPTSFEEGAEVQ 98

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D+  R      HS  HL+            +              ++    I+   L
Sbjct: 99  QHLDWARRLDHMQQHSGQHLITALFDREFKYDTTSWSL--GSSVSHIQLSTPHLISRESL 156

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNR---EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             IE   ND+I +  PV   +++    ++   + A   L   +    RVV +E  +    
Sbjct: 157 DLIERQANDLIREGRPVSVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVRIEGIESN-- 214

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+  ++  + ++    ++  +  +  + G+RA   L     + + L   L
Sbjct: 215 ---MCCGTHVSNLSQLQCIKLLYAEKVKTNVL-VYFVVGERALRKLGEVFAREQQLTVAL 270

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           K      +  V+++ +  +  +    +        +  
Sbjct: 271 KGGPQQHLELVQKLHQNIKSTRKAFQQLLKDFANAEAE 308


>gi|260656268|pdb|3G98|A Chain A, Crystal Structure Of The C-Ala Domain From Aquifex
           Aeolicus Alanyl-Trna Synthetase
 gi|260656269|pdb|3G98|B Chain B, Crystal Structure Of The C-Ala Domain From Aquifex
           Aeolicus Alanyl-Trna Synthetase
          Length = 111

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
               + D      +  EV+ +EL+++ D L+++ +  ++ +     + K + +I V++++
Sbjct: 2   KEENVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVVFIASRKGD-KINFVIGVSKEI 60

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            D+ NA ++ R   KVL GGG GGR  +AQ GG   +K  +A+  +   L
Sbjct: 61  SDKVNAKEVIREVGKVLKGGG-GGRADLAQGGGKAPDKFPEAVKLLKEIL 109


>gi|242556277|pdb|2ZVF|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556278|pdb|2ZVF|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556279|pdb|2ZVF|C Chain C, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556280|pdb|2ZVF|D Chain D, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556281|pdb|2ZVF|E Chain E, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556282|pdb|2ZVF|F Chain F, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556283|pdb|2ZVF|G Chain G, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556284|pdb|2ZVF|H Chain H, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
          Length = 171

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 72/176 (40%), Gaps = 14/176 (7%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN----- 782
           G+ A   +   +  L+  +S L+V    +   VE  +EE++  +    + K  +      
Sbjct: 2   GEAAIEAVEEXERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWAD 61

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
           +      +      ++ ++ + D + L+ + + L +K   G +  +    E K  V+   
Sbjct: 62  ILXERAEEFDSXKVVAEVV-DADXQALQKLAERLAEK---GAVGCLXAKGEGKVFVVTFS 117

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +    +++A +L R   + +  G GGGR  +AQ         ++ +  +  FL +
Sbjct: 118 GQ----KYDARELLREIGR-VAKGSGGGRKDVAQGAVQQLLDREEXLDVIFRFLSE 168


>gi|194887781|ref|XP_001976802.1| GG18657 [Drosophila erecta]
 gi|190648451|gb|EDV45729.1| GG18657 [Drosophila erecta]
          Length = 436

 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 58/391 (14%), Positives = 127/391 (32%), Gaps = 42/391 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ + T  + E GGQ  D G   G  ++            +              +  ++
Sbjct: 43  VICEDTILFPEGGGQPCDYGTLGGFPVKNVQRKGSTAVHFV------ESPTSFEQDAEVL 96

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           LT+DYQ R      HS  HL+            +              ++    I+   L
Sbjct: 97  LTLDYQRRLDHMQQHSGQHLITALFDREFKYDTTSWSL--GSSVSYIQLSTPHLISRESL 154

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNR---EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             IE   ND+I +   V   +++    ++   + A   L   +    RVV +E  +    
Sbjct: 155 DLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVRIEGIESN-- 212

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHV++  ++  + ++    ++  +  +  + G+R    L    ++ + L   L
Sbjct: 213 ---MCCGTHVTNLSQLQCIKLLYAEKVKTNVL-VHFVVGERVLVKLGEVFQREQQLTQAL 268

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEV 804
           K   G  +  V+++ +  +  +    +        +    +          F  H    +
Sbjct: 269 KGGPGQHLELVQKLQQNVKGSRKYFQQLLKDYATAEAERLEELPKKDRPKYFSLHRRDGI 328

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV-----DLARLS 859
           +       ++   +    GI   + +S+         V+     + + V     ++    
Sbjct: 329 EVD----FINTFLRLAPEGIFYFLTVSE--------GVSAGSGAKGHLVLRGDPEIVEKL 376

Query: 860 AKVLGG---GGGGGRPHMAQSGGPNGNKADQ 887
                    G G G+    Q    N  + + 
Sbjct: 377 GPQFVDILEGKGNGKEGSFQGKINNLARLED 407


>gi|300711202|ref|YP_003737016.1| alanyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299124885|gb|ADJ15224.1| alanyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 408

 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 136/373 (36%), Gaps = 30/373 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E           EVV D+T FYAE GGQ  D G   G  +R   T          V H++
Sbjct: 13  EFEARIDRVDGREVVLDRTYFYAEGGGQPADRGEIDGVAVRDVQTRDGT------VVHSL 66

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +   + T  ++   ID   R      H+A+H+L+ A   +L   +   G  I     R 
Sbjct: 67  ADGSGVETGRTVACEIDPAFRTYCMRTHTASHVLYGAGRRLLD-DLGYGGFDIDERKARI 125

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR---- 675
           D   S  I    L  +E   N  + +  PV    +   DA A  A A             
Sbjct: 126 DFETSTDIDDDVLIELEVLANRTVWEGRPVTWETVPVADARAREAVAFNTRTEEGVFEED 185

Query: 676 --VRVVSVEYEDGGVHSSA-----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
             VR+VS+  +     ++       CGGTHVS+T EI  + ++  S+   G+ R+E   G
Sbjct: 186 RGVRIVSIGADRTPTSTAESWDDAACGGTHVSNTREIGPISVLGRSNPGEGLTRVELAVG 245

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDL 786
             A  H        +  A  L V   ++   +    E   +L+   A    ++     D 
Sbjct: 246 PAAIEHRTETRRAAERAARELGVGVPDLPAEIRRRRERITELEDERAALLGRIADARIDA 305

Query: 787 SCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
               +       ++   +  VDS  L     AL      G   +  +  +++ +  +V +
Sbjct: 306 LGEDVLERDGERWLVGSVPHVDSDTLLERARALAG----GDCEVAALVSDERPTTAVVAS 361

Query: 844 EDLLDRFNAVDLA 856
            +  D   A  + 
Sbjct: 362 ANGTD---AGAVI 371


>gi|195393664|ref|XP_002055473.1| GJ18773 [Drosophila virilis]
 gi|194149983|gb|EDW65674.1| GJ18773 [Drosophila virilis]
          Length = 431

 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 59/399 (14%), Positives = 132/399 (33%), Gaps = 42/399 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V +V + T  + E GGQ  D G   G  +R  +         +       E         
Sbjct: 43  VNLVCEDTILFPEGGGQPCDYGTINGQPVRNVLRKGSTAIHFVESSTCFEE------GTE 96

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +D+  R      HS  HL+            +              ++    I+  
Sbjct: 97  VQQHLDWPRRLDHMQQHSGQHLITALFDREFKYDTTSWSL--GASVSYIQLSTPHLISRE 154

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNR---EDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
            L  IE   ND+I +   V   +++    ++   + A   L   +    RVV +E  +  
Sbjct: 155 SLDLIERQANDLIREGRAVSVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVRIEGIESN 214

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                +C GTHV++  ++  + ++    +++ +  +  + G+R    L    ++ + L  
Sbjct: 215 -----MCCGTHVTNLSQLQCIKLLYAEKVKSNVL-VYFVVGERVLRKLGEIFKREQQLTV 268

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-------FMSHI 800
            LK      +  V+++ +  +  +    +        +    ++ ++        F  H 
Sbjct: 269 ALKGGPQQHLELVQKLHQNVKSTRKSFQQLLKDFA--NAEAERLENLPKAMRPKYFALHR 326

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIML-----VGISKEKKASVLIVVTEDLLDRFNAVDL 855
              ++   + +    L+   +     L     V      K  +++     L+++     L
Sbjct: 327 RDGIEVDFINTF---LRNAPEEIFYFLTVSESVSSGSGAKGHMVLRGEPTLVEQLGPKFL 383

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ--AIAGV 892
                  L  G G G+ +  Q    N +   +  A+   
Sbjct: 384 ------ELLEGKGNGKENNFQGKITNLSGLQECNALLEA 416


>gi|254576931|ref|XP_002494452.1| ZYRO0A01782p [Zygosaccharomyces rouxii]
 gi|238937341|emb|CAR25519.1| ZYRO0A01782p [Zygosaccharomyces rouxii]
          Length = 445

 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 146/413 (35%), Gaps = 42/413 (10%)

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                       + CQ+         ++++     +G+  +      K  V    T  + 
Sbjct: 3   TESLTRPTTVGALACQRNSFLFNGFKTTVISCEPVKGKPKDPV----KYLVELHDTILFP 58

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D+G       R+ ++ V +       H        +    ++ + +D   R  
Sbjct: 59  EGGGQPSDSGYLKCSNDRIPVSYVSRVGLHAKHHVGQY----IDPGTTVEVEVDQSKRVD 114

Query: 583 LSINHSATHLLHHALSTILGSH---VSQNGSCITPDGLRFDVTH-------SKPITSAEL 632
               H+  HLL   L +            G  I+      ++          + +TS E+
Sbjct: 115 YMQQHTGQHLLSAILESEPYKLDTLSWSMGGVISAKKPTLEINDYFNYIELPRKLTSQEI 174

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           + +   VN++I+ N   ++ I    +A      + +   Y+    V  +     G   S 
Sbjct: 175 EQVSHKVNELISINPQQISVIERTPEAHGDVQTSKIPDDYDLEKGV--LRTIHIGEIDSN 232

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAG-IRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            C GTH+  T +I  + I    +   G   R+  + G R  ++ M  ++ + +  S L  
Sbjct: 233 PCCGTHLQRTNQIGSILISPNQTNIRGSNSRLYFMCGNRVVNYGMAVNKLVGTAKSSLSC 292

Query: 752 SQGNVVGRVEE----IWEEYRKLQ---LIHAKRK--------LQLNVEDLSCHKIADVNF 796
            +  +  +++     I +  ++ Q      A  +         +     L   +   + F
Sbjct: 293 LESEIPEKIDRQRDLIQKSSKREQFWIKELASYESDRLLAKVKEAGKAFLLKDEYGTLEF 352

Query: 797 MSHIISEVDSKELK-----SVMDALQKK-IQSGIIMLVGISKEKKASVLIVVT 843
           +  +  E  +K  K      ++   ++K  +SG +++V  S EK +++   ++
Sbjct: 353 LLQVFKEFTNKLGKTPNEYQLVLCGREKSTESGSVLIVSESGEKISTIAASLS 405


>gi|330947236|gb|EGH47963.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 146

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/115 (46%), Positives = 76/115 (66%), Gaps = 1/115 (0%)

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+
Sbjct: 1   SNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLK 60

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   
Sbjct: 61  GEEEQFAKTLEQGLKILEQDLADLK-GTVVPGEVVFKLYDTYGFPMDLTGDIARE 114


>gi|170060836|ref|XP_001865977.1| alanyl-tRNA synthetase domain-containing protein 1 [Culex
           quinquefasciatus]
 gi|167879214|gb|EDS42597.1| alanyl-tRNA synthetase domain-containing protein 1 [Culex
           quinquefasciatus]
          Length = 398

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/413 (16%), Positives = 127/413 (30%), Gaps = 56/413 (13%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           +V     G   +V+F+ T  + E GGQ  D G      ++  I         +    A  
Sbjct: 18  VVSCEPGGTGYQVIFEDTVLFPEGGGQPTDHGWVDDLPVKSVIRKGPTAIHFVEGTSAPF 77

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           + G                +      HS  HL+        G +            +  D
Sbjct: 78  QPG----------------QEVRQRQHSGQHLITAIFDREFGVNTKSWWLGTEDSYVDLD 121

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYNDRV 676
               K +T  +L  +E   N +I     V   +   +D             L    +  +
Sbjct: 122 T---KDVTREQLDKVERICNQLIVDCTAVSVAVYQPDDPALKSDVTRATRGLPEDVSGPL 178

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVV+++  +       +C GTHV +  ++  +  ++          +  + G R    L 
Sbjct: 179 RVVTIDGIESN-----MCCGTHVRNLAQLQAIKFLNVE-KGKAKCLVHFLVGGRVLRKLT 232

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN- 795
              ++       L     + V  + ++    R +Q   + RK+   +  L   KI     
Sbjct: 233 ECYDREVQFNGLLNGGAPSHVDLLRKLQTTVRSVQK--SSRKMSSELAQLEADKINQAPD 290

Query: 796 -----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKA---SVLIVVTEDL 846
                +  H     DS  +   +  ++  +    + +   + +  K      L    ED+
Sbjct: 291 PKPKFYTVHRTDGPDSDYINVFLRCVK--LPECFLFVTNAADDTGKGAGQMALQGRPEDI 348

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHM-AQSGGPNGNKADQAIAGVASFLKK 898
                   L      +L G G G  P   A       NK  +AI      +++
Sbjct: 349 AA------LGDPICALLEGKGNGKGPRYNA-----KVNKL-KAIDQCRKLIEE 389


>gi|237745019|ref|ZP_04575500.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|260494796|ref|ZP_05814926.1| alanine-tRNA ligase [Fusobacterium sp. 3_1_33]
 gi|229432248|gb|EEO42460.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|260197958|gb|EEW95475.1| alanine-tRNA ligase [Fusobacterium sp. 3_1_33]
          Length = 375

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 109/286 (38%), Gaps = 22/286 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + + V    +  K   + +   +    GGQLGD          +   ++ +  E + + +
Sbjct: 2   ENKKVNIKKNSDKTYEILNSPFYIDGKGGQLGDR-------GTISDANIIEVKENLVILN 54

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +E G           ID + R  +S  H+A H+            ++  G  +  +  
Sbjct: 55  KNLEDGEHA------YFIDEKRREDISQQHTAQHIFSAEA--YNNFGLNTVGFRMAEEYT 106

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRV 676
             D+   K I+   +  +++ VN+ I +++ +  +I   E+A         +  K    V
Sbjct: 107 TVDLDQ-KDISKEIIDKLDELVNNDIKKDIVIEEKIYTNEEAHKIENLRKAIKDKIKGDV 165

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +   D        C G HVS T +I +  I++  +++    R   + G+RA++   
Sbjct: 166 RFIKIGDID-----ICACAGFHVSRTSQIEIFKIINYENVKGNYTRFYFLAGERAKADYN 220

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            + + +K L +        ++  +++   E  K+        ++  
Sbjct: 221 KKHDIIKKLTNIFSCKDDEILEMLDKSLTEKSKISTELKSLSMKYA 266


>gi|119572223|gb|EAW51838.1| alanyl-tRNA synthetase, isoform CRA_a [Homo sapiens]
          Length = 192

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
           M   + ++++    ++R  A  G+   + ++ Q +K   L   LK         ++++ +
Sbjct: 1   MEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQK-DELRETLKS--------LKKVMD 51

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +  +      ++++    +            +  + S   +K L   +   +        
Sbjct: 52  DLDRASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSA 111

Query: 826 MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ML  +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N  
Sbjct: 112 MLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVG 170

Query: 884 KADQAIAGVASFLK 897
              +A+    SF +
Sbjct: 171 CLQEALQLATSFAQ 184


>gi|115375671|ref|ZP_01462926.1| alanyl-tRNA synthetase, truncated [Stigmatella aurantiaca DW4/3-1]
 gi|115367319|gb|EAU66299.1| alanyl-tRNA synthetase, truncated [Stigmatella aurantiaca DW4/3-1]
          Length = 325

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 122/333 (36%), Gaps = 23/333 (6%)

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             ++   V        V        +      L   ID   RR     H+  H+L  AL 
Sbjct: 10  AVVRDVQVDDAGLVHHVLELSEGGALPEVGAELPGEIDRVRRRLHMALHTGQHMLSRALV 69

Query: 599 TILGSHV--SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
            +  +H   S+ G  +    +  DV     +   ++   E+ VN +I  ++ +       
Sbjct: 70  DVANAHTVSSRLGETLCTIDVDLDV-----LDERKVAEAEEFVNAVIEDDVAIRAFFPTP 124

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+  A         K  + +RVV ++  D      + CGGTH + + ++ ++ ++     
Sbjct: 125 EELAALPLRR--QPKVTENIRVVQIDGFD-----VSPCGGTHCTRSAQVGMIRVLGVER- 176

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             G  R+    G+RARS L  +   L+ L+       G V   ++++  E  + +     
Sbjct: 177 NKGKGRVLFSAGRRARSELWAEAGTLRGLSRAFTCGPGEVPTSIDKLRRELTEAREALGA 236

Query: 777 RKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            + +L      E  S  + +  + +  ++     + L+++   L  +    +++L G   
Sbjct: 237 ARARLAEHTAAELASALEQSPEHRVVAVVEGASPESLRAIAARLTAR-PEAVVLLAGQGP 295

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           E    ++   +      F      +  A+  GG
Sbjct: 296 EGLPVLIARGSG---ASFGCGAFLKRLAEAAGG 325


>gi|312879726|ref|ZP_07739526.1| Alanyl-tRNA synthetase, class IIc [Aminomonas paucivorans DSM
           12260]
 gi|310783017|gb|EFQ23415.1| Alanyl-tRNA synthetase, class IIc [Aminomonas paucivorans DSM
           12260]
          Length = 392

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 132/395 (33%), Gaps = 19/395 (4%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           EA  G +V++V  + PF+   GGQ GD+G     G+R +I D + +     V    V  G
Sbjct: 10  EAGKGNRVKLVLGENPFHPAGGGQPGDSGWVEAPGLRCRILDCRMEEG-APVLLGEVLEG 68

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  +   +D +    L+  HS  H L  AL   +          +        +  
Sbjct: 69  TPVPGAEVEARVDEERHHLLARMHSGEHALSRALEKNVPGLRVFK-VNVDTKESLITLRW 127

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVE 682
              +T   L + E   N +I  +LPV TR+ +RE+A           +         S+ 
Sbjct: 128 EGELTWEVLFAAEAEANGVIRADLPVTTRVFSREEARVDPDLKANWDRLEGGKEAPESLR 187

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
               G +    C G+HV  TG+I  + I            +     +     L      L
Sbjct: 188 VVSLGDYDKVACCGSHVERTGQIGGVLITGFKGTA-PQWEVRYTVHRD--ELLEAWSRPL 244

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           + L   +      +      + EE  + + +  + +  L +         + +F+  ++ 
Sbjct: 245 RRLVRQVGSPPEELEKVYGRLQEERSEARRLLDRLRPFLALP-FREEPRGEASFLRLVLP 303

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR---LS 859
            +    +        ++    +++ +   + +++  L+     L          +     
Sbjct: 304 GLPLDLITGPCKETIQEDPKRLVLALLPDEGERSPFLVCRGAGLTGDLKG--WLKGHPEL 361

Query: 860 AKVLGGGGGGGRPHMAQSGG--PNGNKADQAIAGV 892
           A       GGG P          +  K  +A+  V
Sbjct: 362 AA-----RGGGSPDWISGVTQERDPEKWAKALKEV 391


>gi|256026776|ref|ZP_05440610.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289764772|ref|ZP_06524150.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289716327|gb|EFD80339.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 375

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 106/284 (37%), Gaps = 22/284 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + + V       K   + +   +    GGQLGD          +   ++ +  E + +  
Sbjct: 2   ENKKVNIKKISDKTYEILNSPFYIDGKGGQLGDR-------GTISDANIIEVKENLVILD 54

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +E G           ID + R  +S  H+A H+            ++  G  +  +  
Sbjct: 55  KNLEDGEY------TYFIDEKRREDISQQHTAQHIFSAEA--YNNFGLNTVGFRMAEEYT 106

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRV 676
             D+   K I+   +  +E+ VN+ I +++ V   I   E+A         +  K    V
Sbjct: 107 TVDLDQ-KDISKEIIDKLEELVNNDIKKDIIVEEEIYTNEEAHKIENLRKAIKDKIKGDV 165

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +   D        C G HVS T +I +  I++  +++    R   + G+RA++   
Sbjct: 166 RFIKIGDID-----ICACAGFHVSRTSQIEIFKIINYENVKGNYTRFYFLAGERAKADYN 220

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            + + +K L +        ++  +++   E  K+        ++
Sbjct: 221 KKHDIIKKLTNIFSCKDDEILEMLDKSLAEKTKITTELKSLSIK 264


>gi|46114298|ref|XP_383167.1| hypothetical protein FG02991.1 [Gibberella zeae PH-1]
          Length = 713

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 66/541 (12%), Positives = 140/541 (25%), Gaps = 69/541 (12%)

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393
           G    ++ +A          E E   +  D+   + D ++            +       
Sbjct: 187 GGWIEDVCKAMHWCTNQFCIELESLERKKDQIDKIADQMIKKWYFKRCDGVVLYADALGR 246

Query: 394 HGLPLDIMQDILC--------ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
                                  G     I+S          R+           ++K W
Sbjct: 247 KKSRWSGDSTWGDRRWVRDETEPGRLDYYIVSVTFRPRIDIERSGGTVDREVFNASQKDW 306

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
           F   E       +G +         E  +           +                   
Sbjct: 307 FDENELKIH---LGDESRIEDPSPFEYVRDTRDDDSDSEFSDAE---------------- 347

Query: 506 VSGQKVEVVFDQTPFY-AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             G+  +        Y   +GGQ  D G                  +   +   I     
Sbjct: 348 -VGRHRQRCLSSWSRYGCNSGGQPCDHGTITPLSGEDLAPIPITNVQREGLRCIIHSAKP 406

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +     +   ID++ R      H+  HLL   +           G          D+   
Sbjct: 407 IAPGTEVRQEIDWKRRWDHMQQHTGQHLLSAVMMKNHELKTLGWGMGTDGGFNYVDLQR- 465

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
              T  E+++I+    + I +NL +     +                             
Sbjct: 466 -KPTDEEMQAIQMECAEKIRENLSIKVDTPDNTKDHKLPG-------------------- 504

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                    C GTH++ T  I L+ + S  S+     R+  I G R  +        + +
Sbjct: 505 -----DYDKCCGTHLAQTSHISLIILGSTQSVHGKNCRLSFIAGDRGINLASSSVSAINT 559

Query: 745 LASFLKV--SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKI--ADVNFMS 798
           +A  + V  +   VV R   + +    L+    K  L++   +       I    +N   
Sbjct: 560 IAKMMSVSSNPTEVVTRATALSDSVTDLKRSERKLLLEVAKFESEHAIRSIIQNKMNAYI 619

Query: 799 HIISEVDSKELKSVMDALQKKIQSG---IIMLVGISKEKKASVLIV---VTEDLLDRFNA 852
           +      +  +  ++   +  ++     +++ +G  K     V++      + +  +  +
Sbjct: 620 YRYEG-STDFINKIVGETRDFLEGTEFVVVIAIGEPKGGGPVVIVGDKVAVDAMAKKVKS 678

Query: 853 V 853
           V
Sbjct: 679 V 679


>gi|227873441|ref|ZP_03991696.1| alanyl-tRNA synthetase [Oribacterium sinus F0268]
 gi|227840746|gb|EEJ51121.1| alanyl-tRNA synthetase [Oribacterium sinus F0268]
          Length = 408

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 137/415 (33%), Gaps = 52/415 (12%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
             ++ FY E GGQ  D G   G  +        +  +                   +   
Sbjct: 13  LSESFFYPEGGGQPCDRGSIAGAKLLFVEEKDGELWQY--------TEADFPEGAKVRCQ 64

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   RR  S NHSA H+    +S       S        +     V      +  EL+ 
Sbjct: 65  FDTDFRRWQSENHSAEHIFSGLVSKRFSYKNSGFHMECFGENPHMTVDFDGEFSEKELEE 124

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           +E  VN +I +NLP+    +  E+  +        +    +     +   +     S  C
Sbjct: 125 LEQGVNAVIRKNLPIREIYLEGEEDRSLERKDGSISFRQKKALEGDIRIIEIPKVDSCAC 184

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            GTHVS TGEI +  I+S    R G  R+  + G+ A   L  + + L   A  L     
Sbjct: 185 CGTHVSFTGEIGVFTILSYEKHRKG-CRLTMLAGELAFLALEKKLKLLSGFAQSLSRPWT 243

Query: 755 NVVGRVEEIWEEYRKLQLIH---------------------------------AKRKLQL 781
            +    + + E     +                                        L  
Sbjct: 244 EIPEAFQSLQERIFAKEEEKRGILEAGICLLEEKILKELEEKRKGIEDGERPAKTLFLGS 303

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
            ++D          ++   +S++ +K+L+ + D L++ +   +I L    KE+  SV+  
Sbjct: 304 PLKDSCFSYYGKNQYLFLYLSDLGTKDLQKICDRLRRSLPLSLICLG--KKEEGFSVVAG 361

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             E+     +     +L  + L    GGG+  M Q  G +    ++  A +   L
Sbjct: 362 SREE-----DMRAFGKLMGEKLS-FRGGGQKEMIQ--GSSVKGFEEMNAFIERIL 408


>gi|297737255|emb|CBI26456.3| unnamed protein product [Vitis vinifera]
          Length = 267

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 105/311 (33%), Gaps = 63/311 (20%)

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D    +   K                   S++KAI    E +E A +G +V ++ + T F
Sbjct: 2   DADATATLHKMGVAATDDISKFTWFEDHESVIKAIYTGTEFLESAAAGDEVGIILETTSF 61

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQN 579
           Y E GGQ+ DTG   G     Q+++VQ      + +     E G       ++  +DY  
Sbjct: 62  YTEKGGQIFDTGSLEGSCGSFQVSNVQIYGGFVLHIGSVTGEIGRFSVGDKVICKVDYDR 121

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ ++ NH+ TH+L+ A+  +LG+HV Q GS + P+ LRFD +H     S          
Sbjct: 122 RKLIAPNHTYTHMLNFAMREVLGNHVDQKGSIVLPEKLRFDFSHGNSHNS---------- 171

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I +      TR       ++    A                                 
Sbjct: 172 -WIYSGTHISNTREAKAFALLSEEGIA--------------------------------- 197

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
                              GIRRI A+T   A   +       + + +  +     +  +
Sbjct: 198 ------------------KGIRRITAVTTDSAFKAMELAFSLEQEIDAASEAEGSLLEKK 239

Query: 760 VEEIWEEYRKL 770
           V  +       
Sbjct: 240 VASLRSRVDAA 250


>gi|262195001|ref|YP_003266210.1| phosphoesterase DHHA1 [Haliangium ochraceum DSM 14365]
 gi|262078348|gb|ACY14317.1| phosphoesterase DHHA1 [Haliangium ochraceum DSM 14365]
          Length = 624

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI-IMLVGISKEKKASVLIVVTEDL 846
                 V  +   + +  +  L  +  A+Q +++ G   +L+G   + +A ++  ++ +L
Sbjct: 503 AQLAGGVPVVIGALEDAPADALDEIAAAVQAQLEGGRGAVLLGSVHQGRALLVCALSPEL 562

Query: 847 LD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +    +A  L      ++  G GGGRP+ A+ GG      +QA+A     L
Sbjct: 563 VGPELSAGALLAQILPLVA-GKGGGRPNYARGGGSQPEALEQALAAGRERL 612


>gi|195564917|ref|XP_002106055.1| GD16642 [Drosophila simulans]
 gi|194203425|gb|EDX17001.1| GD16642 [Drosophila simulans]
          Length = 436

 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 64/428 (14%), Positives = 146/428 (34%), Gaps = 38/428 (8%)

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K        +    + S   A     +   +    +   V+ + T  + E GGQ  D G 
Sbjct: 4   KCQEDSFLKEFKTKIVSSEFATFDWTDPSGKVEKLKGFNVICEDTILFPEGGGQPCDYGT 63

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G  ++            +   H +        +  ++LT+DYQ R      HS  HL+
Sbjct: 64  LGGFPVKNVQRKG------LTAVHFVESPTSFEQDAEVLLTLDYQRRLDHMQQHSGQHLI 117

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
                       +              ++    I+   L  IE   ND+I +   V   +
Sbjct: 118 TALFDREFKYDTTSWSL--GSSVSYIQLSTPHLISRESLDLIERQANDLIREGREVTVLL 175

Query: 654 MNR---EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           ++    ++   + A   L   +    RVV +E  +       +C GTHV++  ++  + +
Sbjct: 176 VDPEVAQEFQDARAPRGLPKDHEGLARVVRIEGIESN-----MCCGTHVTNLSQLQCIKL 230

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +    +++ +  +  + G+R    L    ++ + L + LK   G  +  V+++ +  +  
Sbjct: 231 LYAEKVKSNVL-VHFVVGERVLVKLGEVFQREQQLTAALKGGPGQHLELVQKLQQNVKGS 289

Query: 771 QLIHAKRKLQLNVEDLS----CHKIADVNFMS-HIISEVDSKELKSVMDALQKKIQSGII 825
           +    +   +    +        K     + S H    ++       ++   +     I 
Sbjct: 290 RKYFQQLLKRYATAEAERLCDLPKKDRPKYFSLHRRDGIEVD----FINTFLRVAPEEIF 345

Query: 826 MLVGISK------EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             + +S+        K  +++    +++ R     L     ++L G G G   +  Q   
Sbjct: 346 YFLTVSESVFAGSSAKGHLVLRGDPEIVGR-----LGPQFVEILEGKGNGKEGNF-QGKI 399

Query: 880 PNGNKADQ 887
            N  + ++
Sbjct: 400 NNLARLEE 407


>gi|256752544|ref|ZP_05493400.1| phosphoesterase DHHA1 [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748610|gb|EEU61658.1| phosphoesterase DHHA1 [Thermoanaerobacter ethanolicus CCSD1]
          Length = 76

 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 826 MLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L   + E KA  + + T+D++    N   + +   K +  G GGGRP MAQ  G N +K
Sbjct: 1   VLASSTPE-KAIFVGMATKDVVQKGINMGAVIKEVCK-VSEGNGGGRPDMAQGTGKNPSK 58

Query: 885 ADQAIAGVASFLKK 898
            ++A+      +K+
Sbjct: 59  VEEALNKAIDIVKE 72


>gi|325284894|ref|YP_004264356.1| phosphoesterase DHHA1 [Deinococcus proteolyticus MRP]
 gi|324316609|gb|ADY27721.1| phosphoesterase DHHA1 [Deinococcus proteolyticus MRP]
          Length = 411

 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 119/334 (35%), Gaps = 18/334 (5%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           + V+  K EV  D + FY + GGQ GD G         ++T  +       V HA+    
Sbjct: 27  QVVAAAKGEVALDASAFYPQGGGQNGDCGWLRAGEQSWKVTGTRLDKASGAVWHAVEGEL 86

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  L   +D  +R +    H+  HLL  A + +  +          PD        
Sbjct: 87  PP-VGTQLDGEVDAYSRLRQMARHTGEHLLAQAFARVNPAFEVAAVGMRGPDCTLDLRGD 145

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                +   +++   V  ++A  L + T+++   +  A        T     VR+V    
Sbjct: 146 PSEADAQAAEALLREV--MVAGPLRLDTQLVPHTELRAYPLRRA--TPLTGDVRLVMFRD 201

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G +   + C GTH+        + ++    I+AG+ R+    G  A  +L G     +
Sbjct: 202 AAGDLFDVSACAGTHLPLGNLAAPVTVLGLERIKAGLTRVTFRAGPEAAEYLGGVYRDTR 261

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVN----- 795
           +LA         +  RVE +  E  +L       +  L    V+         V      
Sbjct: 262 ALAQSFSTGPAGLAERVEALRSERDRLAAEAQALRTALAGALVDAAPAETAGSVTLRLLS 321

Query: 796 -----FMSHIISEVDSKELKSVMDALQKKIQSGI 824
                 ++ ++  V + E+++ +   +  + SG+
Sbjct: 322 LPEEGLLAPVLGSVPAGEVRAAVAGERCGVGSGV 355


>gi|225454668|ref|XP_002269399.1| PREDICTED: similar to ALATS (ALANYL-TRNA SYNTHETASE); ATP binding /
           alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and
           related compounds / nucleic acid binding [Vitis
           vinifera]
          Length = 532

 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 73/470 (15%), Positives = 140/470 (29%), Gaps = 87/470 (18%)

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           +       +D+  FN  ++E R R+R       +G    +                D   
Sbjct: 1   MAEESGLRVDVTGFNITMDEARERSRNAQKKGKAGGAIVM----------------DADA 44

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +   K                   S++KAI    E +E A +G +V ++ + T FY E 
Sbjct: 45  TATLHKMGVAATDDISKFTWFEDHESVIKAIYTGTEFLESAAAGDEVGIILETTSFYTEK 104

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ           +    T   + + G  +   I + G L          + Q      
Sbjct: 105 GGQFD--PVESAPEVPKLDTLTVRLSSGSILMDLIFDTGSLEGSCGSFQVSNVQIY---- 158

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
                  +LH                 +T +  RF V           +      N    
Sbjct: 159 ----GGFVLHIGS--------------VTGEIGRFSVGDKVICKVDYDRRKLIAPNHTYT 200

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L    R +        G+  L                            GTH+S+T E
Sbjct: 201 HMLNFAMREVLGNHVDQKGSIVLPEKLR------------------FDFSHGTHISNTRE 242

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLM---GQDEKLKSLASFLKV---------- 751
                ++SE  I  GIRRI A+T   A   +      ++++ + +               
Sbjct: 243 AKAFALLSEEGIAKGIRRITAVTTDSAFKAMELAFSLEQEIDAASEAEGSLLEKKVASLR 302

Query: 752 -----------SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVN 795
                       + ++  ++  + ++ RK Q   A+  +Q  V+                
Sbjct: 303 SRVDAAPIPAPKKADLRTKISLLQDQVRKEQKKIAEENIQKAVKVATEMADGAASDGKAF 362

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
           F+S +   +D+  ++  +  + ++    +++        KA V   + E+
Sbjct: 363 FISLVDVGLDTTAVREAVLKVIERQGISVMVFSTDETTNKAVVYAGIPEN 412


>gi|294785828|ref|ZP_06751116.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|294487542|gb|EFG34904.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 375

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 104/286 (36%), Gaps = 22/286 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +   V       +   + +   +    GGQLGD          +   ++ +  E + +  
Sbjct: 2   ENTKVNIKKISDRTYEILNSPFYTDGKGGQLGDR-------GTISDANIIEVKENLVILD 54

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +E G           ID + R  +   H+A H+            ++  G  +  +  
Sbjct: 55  KDLEDGEY------TYFIDEKRREDIRQQHTAQHIFSAEA--YNNFGLNTVGFRMAEEYT 106

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRV 676
             D+   K I+   ++ +E+ VN+ I  ++ V   I   E+A         +  K    V
Sbjct: 107 TIDLDQ-KDISKEIIEKLEELVNNDIKTDIVVEEEIYTNEEAHKIENLRKAIKDKIKGDV 165

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +   D        C G HVS T +I +  I++  +I+    R   + G+RA++   
Sbjct: 166 RFIKIGDID-----ICACAGFHVSRTSQIEIFKIINYENIKGNYTRFYFLAGERAKADYN 220

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            + + +K L +        ++  +++   E  K+        ++  
Sbjct: 221 KKHDIIKKLTNIFSCKDDEILEMLDKSLTEKTKITTELKSLSIKYA 266


>gi|206895152|ref|YP_002247625.1| alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS), putative
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737769|gb|ACI16847.1| alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS), putative
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 346

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 117/309 (37%), Gaps = 23/309 (7%)

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
              Y   GGQ  D     G G  ++  +  K+  G F     +   + +TE+ + + ID 
Sbjct: 19  ACIYEGGGGQPADRIKVKGPGFYIESDEAFKEKGGTFWKVRSISGEVPKTEVEVDVVIDE 78

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++S  H+A H+       + G      G  I  D  + ++         +   +E 
Sbjct: 79  LWRLEVSQQHTAQHIFSALAEQLYGW--PSEGFAIFDDESKIEL-LGADEDPEKYAQLER 135

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN++I + +P   R+   E+                  R+V +E  D        CGGT
Sbjct: 136 QVNEVILRQIP--VRVYVTEEVDEKLRKHTDYEHP----RIVEIEGID-----KCACGGT 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV++TG +    I+          R+    G R         E+ + L + L    G+V 
Sbjct: 185 HVTNTGYVGGFAILKVERKNTRYVRVIFAAGIRLARIAKNYIEREQKLKNLL---TGDVE 241

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            RV ++ E+ ++L+L        + V+     ++   N        +D + +K +     
Sbjct: 242 ERVFQLLEQKKQLELEKKNLLELVKVQIAQSDEVFWKNL------PLDMQSMKQIAAYCN 295

Query: 818 KKIQSGIIM 826
           +K +  +++
Sbjct: 296 EKDKDIVLV 304


>gi|242034369|ref|XP_002464579.1| hypothetical protein SORBIDRAFT_01g021216 [Sorghum bicolor]
 gi|242074962|ref|XP_002447417.1| hypothetical protein SORBIDRAFT_06g000746 [Sorghum bicolor]
 gi|242087319|ref|XP_002439492.1| hypothetical protein SORBIDRAFT_09g008037 [Sorghum bicolor]
 gi|241918433|gb|EER91577.1| hypothetical protein SORBIDRAFT_01g021216 [Sorghum bicolor]
 gi|241938600|gb|EES11745.1| hypothetical protein SORBIDRAFT_06g000746 [Sorghum bicolor]
 gi|241944777|gb|EES17922.1| hypothetical protein SORBIDRAFT_09g008037 [Sorghum bicolor]
          Length = 97

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 11/96 (11%)

Query: 208 FEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV-------- 259
           F ++       LP   +DTGMG ER+ ++LQ K +NYD D+F  +  A  Q+        
Sbjct: 1   FNREADGSLRPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGDGIQPY 60

Query: 260 ---TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
               G    G   + +RV+ DH+R+ SF IADG  P
Sbjct: 61  SGKVGSDDIGKVDMAYRVVADHIRTLSFAIADGAQP 96


>gi|237741554|ref|ZP_04572035.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|229429202|gb|EEO39414.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
          Length = 375

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 103/286 (36%), Gaps = 22/286 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +   V       +   + +   +    GGQLGD          +   ++ +  E + +  
Sbjct: 2   ENTKVNIKKISDRTYEILNSPFYTDGKGGQLGDR-------GTISDANIIEVKENLVILD 54

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +E G           ID + R  +   H+A H+            ++  G  +  +  
Sbjct: 55  KDLEDGEY------TYFIDEKRREDIRQQHTAQHIFSAEA--YNNFGLNTVGFRMAEEYT 106

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRV 676
             D+   K I+   ++ +E  VN+ I  ++ V   I   E+A         +  K    V
Sbjct: 107 TIDLDQ-KDISKEIIEKLEKLVNNDIKTDIVVEEEIYTNEEAHKIENLRKAIKDKIKGDV 165

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +   D        C G HVS T +I +  I++  +I+    R   + G+RA++   
Sbjct: 166 RFIKIGDID-----ICACAGFHVSRTSQIEIFKIINYENIKGNYTRFYFLAGERAKADYN 220

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            + + +K L +        ++  +++   E  K+        ++  
Sbjct: 221 KKHDIIKKLTNIFSCKDDEILEMLDKSLTEKAKITTELKSLSIKYA 266


>gi|195340984|ref|XP_002037092.1| GM12293 [Drosophila sechellia]
 gi|194131208|gb|EDW53251.1| GM12293 [Drosophila sechellia]
          Length = 436

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/435 (14%), Positives = 143/435 (32%), Gaps = 36/435 (8%)

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K        +    + S   A     +   +    +   V  + T  + E GGQ  D G 
Sbjct: 4   KCQEDSFLKEFKTKIVSSEFATFDWTDPSGKVEKLKGFNVTCEDTILFPEGGGQPCDYGT 63

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G  ++            +    +  +         ++LT+DYQ R      HS  HL+
Sbjct: 64  LGGFPVKNVQRKGSTAVHFVESTTSFEQDAE------VLLTLDYQRRLDHMQQHSGQHLI 117

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
                       +              ++ S  I+   L  IE   ND+I +   V   +
Sbjct: 118 TALFDREFKYDTTSWSL--GSSVSYIQLSTSHLISRESLDLIERQANDLIREGREVTVLL 175

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           ++ + A     A        D V +  V   +G    S +C GTHV++  ++  + ++  
Sbjct: 176 VDPKVAQEFQDARAPRGLPKDHVGLARVVRIEG--IESNMCCGTHVTNLSQLQCIKLLYA 233

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             +++ +  +  + G+R    L    ++ + L   LK   G  +  V+++ +  +  +  
Sbjct: 234 EKVKSNVL-VHFVVGERVLVKLGEVFQREQQLTQALKGGPGQHLELVQKLQQNVKGSRKY 292

Query: 774 HAKRKLQLNVEDLS----CHKIADVNFMS-HIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   +    +        K     + S H    ++       ++   +     I   +
Sbjct: 293 FQQLLKRYATAEAERLCDLPKKDRPKYFSLHRRDGIEVD----FINTFLRVAPEEIFYFL 348

Query: 829 GISK------EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +S+        K  +++    +++       L     ++L G G G   +  Q    N 
Sbjct: 349 TVSESVFAGSSAKGHLVLRGDPEIV-----GKLGPQFVEILEGKGNGKEGNF-QGKINNL 402

Query: 883 NKADQAIAGVASFLK 897
           ++    +      L+
Sbjct: 403 SR----LEKCQELLE 413


>gi|3293580|gb|AAC25784.1| AlaS [Serratia marcescens]
          Length = 63

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           S+   VT+DL DR  A +L    A+   GG GG RP MA +GG + N    A+  V +++
Sbjct: 1   SLFAGVTKDLTDRVKAGELIGNVAQQ-FGGKGGVRPDMAMAGGTDINALPAALNSVEAWV 59


>gi|254304123|ref|ZP_04971481.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324315|gb|EDK89565.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 373

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 103/286 (36%), Gaps = 22/286 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +   +       K   + +   +    GGQLGD          +   ++ +  E + +  
Sbjct: 2   ENIKINIKKISDKTYEILNSPFYVDGKGGQLGDR-------GTIFDANIIEVRENLVILD 54

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +E G           ID + R  +   H+A H+            ++  G  +  +  
Sbjct: 55  KNLEDGEY------TYFIDEKRREDIRQQHTAQHIFSAEA--YNNFGLNTVGFRMAEEYT 106

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRV 676
             D+   K I+   +  +E+ VN+ I +++ +   I   E+A         +  K    V
Sbjct: 107 TVDLDQ-KDISKEVIDKLEELVNNDIKKDIIIEEEIYTNEEAHKIENLRKAIKDKIKGDV 165

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +   D        C G HVS T EI +  ++   +I+    R   + G+RA++   
Sbjct: 166 RFIKIGDID-----ICACAGFHVSRTSEIEIFKLIYHENIKGNYTRFYFLAGERAKADYN 220

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            + + +K L +        ++  +++   E  K+        ++  
Sbjct: 221 KKHDIIKKLTNIFSCKDDEILEMLDKSLTEKAKITAELKSLSMKYA 266


>gi|34763243|ref|ZP_00144205.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887096|gb|EAA24205.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 375

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 112/323 (34%), Gaps = 27/323 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +   V       +   + +   +    GGQLGD G      I     ++    + +    
Sbjct: 2   ENTKVNIKKISDRTYEILNSPFYTDGKGGQLGDRGTISNANIIEVKENLVILDKDL---- 57

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                     +      ID + R  +   H+A H+            ++  G  +  +  
Sbjct: 58  ---------KDGEYTYFIDEKRREDIRQQHTAQHIFSAEA--YNNFGLNTVGFRMAEEYT 106

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRV 676
             D+   K I+   ++ +E+ VN+ I  ++ V   I   E+A         +  K    V
Sbjct: 107 TVDLDQ-KDISKEIIEKLEELVNNDIKTDIVVEEEIYTNEEAHKIENLRKAIKDKIKGDV 165

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +   D        C G HVS T +I +  I++  +I+    R   + G+RA++   
Sbjct: 166 RFIKIGDID-----ICACAGFHVSRTSQIEIFKIINYENIKGNYTRFYFLAGERAKADYN 220

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLS--CHKI 791
            + + +K L +        ++  +++   E  K+        ++   L V+D      + 
Sbjct: 221 KKHDIIKKLTNIFSCKDDEILEMLDKSLTEKVKISTELKSLSMKYIELMVKDFENIFIEY 280

Query: 792 ADVNFMSHIISEVDSKELKSVMD 814
                + +   E     L   ++
Sbjct: 281 KGYKILIYNEDENLVNILPKFVN 303


>gi|119572225|gb|EAW51840.1| alanyl-tRNA synthetase, isoform CRA_c [Homo sapiens]
          Length = 72

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVP 45
            S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  
Sbjct: 6  TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQ 48


>gi|167950026|ref|ZP_02537100.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 139

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/126 (46%), Positives = 88/126 (69%), Gaps = 1/126 (0%)

Query: 268 NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
              + RVI DH+RS +FL+ DG++P+NEGRG+VLRRI+RRA+ +  +LG        L+ 
Sbjct: 8   QEKSLRVIADHIRSCAFLVVDGVIPSNEGRGFVLRRIIRRAIRHGYMLGQKGAFFYRLVG 67

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA 387
            LC EMG++YPEL+ A+ L+E  L+ E+ERF +TL++G+ +L+ V++ L   +I  G   
Sbjct: 68  PLCDEMGASYPELLSARALVERVLKQEEERFAETLEQGMRILEEVIAGLEGKQI-PGATV 126

Query: 388 FKLYDT 393
           FKLYDT
Sbjct: 127 FKLYDT 132


>gi|262066380|ref|ZP_06025992.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291379945|gb|EFE87463.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 375

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 102/281 (36%), Gaps = 22/281 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + + +           V +   +    GGQLGD          +   ++ +  E I +  
Sbjct: 2   ENKKINLKKISDMTYEVLNSPFYVDGKGGQLGDR-------GTIAEANIVEVKENIVILD 54

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +E G          +ID + +  +   H+A H+            ++  G  +  +  
Sbjct: 55  KNLEDGEY------TYSIDEKRQEDIRQQHTAQHIFSAEA--YNNFGLNTVGFRMAEEYT 106

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRV 676
             D+   K I+   ++ +E+ VN+ I  ++ V   I   EDA         +  K    V
Sbjct: 107 TVDLDQ-KDISKETIEKLEELVNNDIKADILVEEEIYTNEDAHKIENLRKTIKEKIKGDV 165

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +   D        C G HV+ T EI +  I++  +I+    R   + G RA++   
Sbjct: 166 RFIKIGDVD-----ICACAGFHVARTSEIEIFKIINHENIKGNYTRFYFLAGDRAKNDYN 220

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            + + +K L +        ++  +++  +E   +       
Sbjct: 221 KKHDIIKKLTNTFSCKDDEILEMLDKALKEKASVTAELKSL 261


>gi|237739802|ref|ZP_04570283.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229423410|gb|EEO38457.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 375

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 101/281 (35%), Gaps = 22/281 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + + +           V +   +    GGQLGD          +   ++ +  E I +  
Sbjct: 2   ENKKINLKKISDMTYEVLNSPFYVDGKGGQLGDR-------GTIAEANIVEVKENIVILD 54

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +E G          +I+ + +  +   H+A H+            ++  G  +  +  
Sbjct: 55  KNLEDGEY------TYSINEKRQEDIRQQHTAQHIFSAEA--YNNFGLNTVGFRMAEEYT 106

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRV 676
             D+   K I+   ++ +E+ VN  I  ++ V   I   E+A         +  K    V
Sbjct: 107 TVDLDQ-KDISKEVIEKLEELVNKDIKADILVEEEIYTNEEAHKFENLRKAIKEKIKGDV 165

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +   D        C G HVS T EI +  I++  +I+    R   + G RA++   
Sbjct: 166 RFIKIGDVD-----ICACAGFHVSRTSEIEIFKIINHENIKGNYTRFYFLAGDRAKNDYN 220

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            + + +K L +        ++  +++  +E   +       
Sbjct: 221 KKHDIIKKLTNTFSCKDDEILEMLDKSLKEKASVTAELKSL 261


>gi|294783088|ref|ZP_06748412.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294479966|gb|EFG27743.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 375

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 110/312 (35%), Gaps = 27/312 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + + +           V +   +    GGQLGD          +   ++ +  E I +  
Sbjct: 2   ENKKINLKKISDMTYEVLNSPFYVDGKGGQLGDR-------GTIAEANIVEVKENIVILD 54

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +E G          +I+ + +  +   H+A H+            ++  G  +  +  
Sbjct: 55  RNLEDGEY------TYSINEKRQEDIRQQHTAQHIFSAEA--YNNFGLNTVGFRMAEEYT 106

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRV 676
             D+   K I+   ++ +E+ VN  I  ++ V   I   E+A         +  K    V
Sbjct: 107 TVDLDQ-KDISKEVIEKLEELVNKDIKADILVEEEIYTNEEAHKFENLRKAIKEKIKGDV 165

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +   D        C G HVS T EI +  I++  +I+    R   + G RA++   
Sbjct: 166 RFIKIGDVD-----ICACAGFHVSRTSEIEIFKIINHENIKGNYTRFYFLAGDRAKNDYN 220

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLNVEDLSCHKI-- 791
            + + +K L +        ++  +++  +E   +            +L  +D     I  
Sbjct: 221 KKHDIIKKLTNTFSCKDDEILEMLDKSLKEKASVTAELKSLGMRYAELMAKDFENTFIDY 280

Query: 792 ADVNFMSHIISE 803
            D   + +   E
Sbjct: 281 KDFKILIYNEDE 292


>gi|258614837|ref|ZP_05712607.1| alanyl-tRNA synthetase [Enterococcus faecium DO]
          Length = 81

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +K  S I++L    +E K S+L  +T++  +    A DL +  A  +GGGG GGRP MAQ
Sbjct: 1   QKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGG-GGRPDMAQ 58

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
           +GG N      A+     ++ +
Sbjct: 59  AGGKNPAGIPDALKAAKEWVAQ 80


>gi|225710766|gb|ACO11229.1| Alanyl-tRNA synthetase domain-containing protein 1-B [Caligus
           rogercresseyi]
          Length = 414

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 124/351 (35%), Gaps = 33/351 (9%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           + + +EV    T  + E GGQ  DTG      +   + D  K    + +         L 
Sbjct: 23  TNEYLEVELQDTILFPEGGGQNHDTGRIDAYRVAKVLRDGGKAVHYVDLE------ASLE 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDV 621
            +  + L +D+  R      H+  HLL   L            +++N     P     ++
Sbjct: 77  LDQPVCLLLDWNRRFDNMQQHTGQHLLSALLQSKLGLKTNSWWMAENSESEGPGISYIEL 136

Query: 622 THSKPITS-----AELKSIEDNVNDIIAQNLPVVT--RIMNREDAIASGAAALLGTKYND 674
                         + +SIE + N +I    PV      +   +   + +  L     +D
Sbjct: 137 LQEGGKNKGSFGLTDAESIEKDANQMIRDGRPVTVSAHRVGDSELERAYSRGLPEDLPHD 196

Query: 675 R-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI-RRIEAITGQRAR 732
             +R+V +           +C GTHVS+   + ++ I      +      +  + G+R  
Sbjct: 197 ALIRIVDIIG------DRNMCCGTHVSNLSHLQMIKITQVQKTKKANEYLLYFVVGERVI 250

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L    ++   L   LK    +    VE+     +  + I++    +L V  L  HKI 
Sbjct: 251 RLLSSCLDRETKLTGLLKNRPLDHCSLVEKALSTSKNAKKINSNLLKELAV--LEAHKIL 308

Query: 793 DV----NFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGISKEKKASV 838
                  F+ +   + +S+ + + +  L  K +    I L+  S E  +S 
Sbjct: 309 RSTPIPKFICNHRKDGNSEFVGTFIKELTGKEEFKVFIFLIVGSGEGGSSY 359


>gi|256844889|ref|ZP_05550347.1| alanine-tRNA ligase [Fusobacterium sp. 3_1_36A2]
 gi|256718448|gb|EEU32003.1| alanine-tRNA ligase [Fusobacterium sp. 3_1_36A2]
          Length = 375

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 103/286 (36%), Gaps = 22/286 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +   V       K   + +   +    GGQLGD          +   ++ +  E + +  
Sbjct: 2   ENIKVNIKKISDKTYEILNSPFYVDGKGGQLGDR-------GTISDVNIVEVKENLVILD 54

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +E G           ID + R  +   H+A H+            ++  G  +  +  
Sbjct: 55  KNLEDGEY------TYFIDEKRREDIRQQHTAQHIFSAEA--YNNFGLNTVGFRMAEEYT 106

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRV 676
             D+   K I+   +  +E+ VN+ I  ++ V   I   E+A         +  K    V
Sbjct: 107 TVDLDQ-KDISKEIIDKLEELVNNDIKTDIVVEEEIYTNEEAHKIENLRKAIKDKIKGDV 165

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +   D        C G HVS T +I +  I++  +I+    R   + G+RA++   
Sbjct: 166 RFIKIGDID-----ICACAGFHVSRTSQIEIFKIINYENIKGNYTRFYFLAGERAKADYN 220

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            + + +K L +        ++  +++   E  K+        ++  
Sbjct: 221 KKHDIIKKLTNIFSCKDDEILEMLDKSLTEKVKVSTELKSLSMKYA 266


>gi|167950024|ref|ZP_02537098.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
 gi|110589400|gb|ABG77209.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 167

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 91/156 (58%)

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+   +F H   +E G L     +   ++   R+  ++NHSATHLLH AL  +
Sbjct: 10  FEVEDTRKQGGDVFGHIGKLEEGSLAVGDPVTAEVNAFTRQATALNHSATHLLHAALREV 69

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  + LRFD +  +P++  +L+ +E  VN+ I QN  V TRIM+ EDA 
Sbjct: 70  LGDHVAQKGSLVDDERLRFDFSQFEPVSREQLQRVEQRVNEQIRQNHMVETRIMSLEDAR 129

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +SGA AL G KY+++VRV+ +      +     C G
Sbjct: 130 SSGAMALFGEKYDEQVRVLRMGDFSTELVRRHPCEG 165


>gi|159110639|ref|XP_001705570.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Giardia lamblia ATCC 50803]
 gi|157433657|gb|EDO77896.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Giardia lamblia ATCC 50803]
          Length = 401

 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 111/277 (40%), Gaps = 19/277 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               V V    + F+ ++GGQLGD G   G  +     D + +   +       +  +  
Sbjct: 21  KNDNVYVRLSHSYFFPQSGGQLGDVGSIGGLPVITTSCDEEHRPLHLMATAPPSDIELDC 80

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           +   +        RRQ SI+H+  H+L            + +   + PD    +++    
Sbjct: 81  SVNEV-------YRRQNSISHTGQHILSGVAEQ--CFQATTSSYTMGPDLSTLELSV--K 129

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVSVEYE 684
           +   +L  IE   NDII Q +PV + +++ E+ +   +        +     RVV +E  
Sbjct: 130 LDMDKLLEIESRANDIIRQCIPVKSILIHSEEELGKYSELSRPKLKSLNFPLRVVDIEGV 189

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D     + LC GTH  +TGE  L+ +    S R G++ ++   G RA S +  + + L  
Sbjct: 190 D-----TCLCCGTHAGNTGECGLVKVFGCESSRGGVK-VQFAVGDRAVSLINNRLKTLSI 243

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           + + L      V   VE +  E + L+         +
Sbjct: 244 ICASLTTGHDAVAKSVEALLAEGKVLKTQEKSLVKAI 280


>gi|296329384|ref|ZP_06871884.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153504|gb|EFG94322.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 373

 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 101/286 (35%), Gaps = 22/286 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +   V       K   +     +    GGQLGD          +   ++ +  E + +  
Sbjct: 2   ENIKVNIKKISDKTYEILTSPFYVDGKGGQLGDR-------GTIFDANIVEVKENLVILD 54

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +E G           I+ + R  +   H+A H+            ++  G  +  +  
Sbjct: 55  KDLEDGEYS------YFINEKRREDIRQQHTAQHIFSAEA--YNNFGLNTVGFRMAEEYT 106

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRV 676
             D+   K I+   +  +E+ VN  I  ++ +   I   E+A         +  K    +
Sbjct: 107 TVDLDQ-KDISKEIIDKLEELVNKDIKADIVIEEEIYTNEEAHKIENLRKAIKDKIKGDI 165

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +   D        C G HVS T EI +  +++  +++    R   + G+RA++   
Sbjct: 166 RFIKIGNID-----ICACAGFHVSRTSEIEIFKLINYENVKGNYTRFYFLAGERAKADYN 220

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            + + +K L +        ++  +++   E  K+        ++  
Sbjct: 221 KKHDIIKKLTNVFSCKDDEILEMLDKSLAEKAKITTELKSLSIKYA 266


>gi|19703862|ref|NP_603424.1| alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714020|gb|AAL94723.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 373

 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 22/284 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +   V       K   +     +    GGQLGD          +   ++ +  E + +  
Sbjct: 2   ENIKVNIKKISDKTYEILTSPFYVDGKGGQLGDR-------GTIFDANIVEVKENLVILD 54

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +E G           I+ + R  +   H+A H+            ++  G  +  +  
Sbjct: 55  KDLEDGEYS------YFINEKRREDIRQQHTAQHIFSAEA--YNNFGLNTVGFRMAEEYT 106

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRV 676
             D+   K I+   +  +E+ VN  I  ++ +   I   E+A         +  K    +
Sbjct: 107 TVDLDQ-KDISKEIIDKLEELVNKDIKADIVIEEEIYTNEEAHKIENLRKAIKDKIKGDI 165

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +   D        C G HVS T EI +  +++  +++    R   + G+RA++   
Sbjct: 166 RFIKIGNID-----ICACAGFHVSRTSEIEIFKLINYENVKGNYTRFYFLAGERAKADYN 220

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            + + +K L +        ++  +++   E  K+        ++
Sbjct: 221 KKHDIIKKLTNVFSCKDDEILEMLDKSLAEKAKIATELKSLSIK 264


>gi|326934189|ref|XP_003213176.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like [Meleagris
           gallopavo]
          Length = 475

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 110/279 (39%), Gaps = 22/279 (7%)

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYE 684
            +T+ +++++E +VN+ I + +PV  R +  +D+      +  L   +   VRVV +E  
Sbjct: 208 SMTAEQMEALEQSVNEKIRERIPVTVRELAADDSEVETVESRGLPGDHTGPVRVVDIEGI 267

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D       +C GTHVS+  ++ ++ ++     +     +  + G R    +       K+
Sbjct: 268 DSN-----MCCGTHVSNLSDLQVIKLLCTEKGKKNKTNLVFLAGNRVLKSVEQSHRTEKA 322

Query: 745 LASFLKVSQGNVVGRVEEIWEEY---RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           L S LK   G  V  V+ +       +K  L   +    L   D     +    F+ H  
Sbjct: 323 LTSLLKNGPGEHVEAVKRLQSSVKLLQKNNLNLLRDVAVLIARDFKSRPVQSPLFVLHRK 382

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK--ASVLIVVTEDLLDRFNAVDLARLS 859
                      M+ +  +I S   +L     ++K     L+  + + ++     +L    
Sbjct: 383 EGDS-----EFMNIIANEIGSEETLLFLTVGDEKEAGLFLLAGSVEAVE-----NLGPRV 432

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           A++L G G G R    Q      ++  +  A +  F+ +
Sbjct: 433 AELLEGKGAGKRGRY-QGKATKMSRRGEVQALLQEFISQ 470


>gi|13924631|gb|AAK49080.1|AF258288_1 alanyl-tRNA synthetase [Brassica napus]
          Length = 107

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 47/87 (54%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++KSL S LKV   +V  RV+
Sbjct: 1   TAEIRSFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKSLCSILKVKAEDVTNRVD 60

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            + EE R  +   +  + +  V   S 
Sbjct: 61  NLLEELRTARKEASDLRSKAAVYRASV 87


>gi|323486959|ref|ZP_08092274.1| alanyl-tRNA synthetase [Clostridium symbiosum WAL-14163]
 gi|323399731|gb|EGA92114.1| alanyl-tRNA synthetase [Clostridium symbiosum WAL-14163]
          Length = 61

 Score = 83.7 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 31/47 (65%)

Query: 4  VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF 50
          V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K IF
Sbjct: 6  VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKTIF 52


>gi|149569588|ref|XP_001506604.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 330

 Score = 83.7 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 106/275 (38%), Gaps = 26/275 (9%)

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDG 686
           T A++ +IE  VN+ I   +PV  + +   D       +  L   +   +RVV++E  D 
Sbjct: 69  TPAQVVAIEQEVNEKIRARVPVSVKELEATDPEVEKVRSRGLPDDHAGPIRVVNIEGLDS 128

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                 LC GTHV +  E+ ++ ++     +     +  + G R    +     + ++L 
Sbjct: 129 N-----LCCGTHVCNLAELQVIKLLGVEKGKKNRTNLVFLAGGRVLQAVERSYGRERALT 183

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISEVD 805
             LK      V  VE++    + LQ      K+   V   S H +   + +   ++S   
Sbjct: 184 GRLKCGPEEHVEAVEKLQASTKLLQ------KVSRTVHTASVHPLPLGIQWSGTVLSAGQ 237

Query: 806 SKELKS-VMDALQKKIQSGIIMLVGISKEKKAS---VLIVVTEDLLDRFNAVDLARLSAK 861
               ++   D+  + + S   +L     ++K +   +L    E       AV+     A 
Sbjct: 238 DGMARAWAWDS--EVMGSKKTLLFLTVGDEKGAGLFLLAGPPE-------AVNTLGPRAA 288

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            L  G G G+P   Q      ++  + +  +  F+
Sbjct: 289 ELLQGRGAGKPGRFQGKATKLSQRAEVLTLLRDFV 323


>gi|6324288|ref|NP_014358.1| hypothetical protein YNL040W [Saccharomyces cerevisiae S288c]
 gi|1730724|sp|P53960|YNE0_YEAST RecName: Full=Putative alanyl-tRNA editing protein alaX;
           Short=AlaX; Short=AlaXp; Short=AlaXp-II; AltName:
           Full=Alanyl-tRNA deacylase alaX
 gi|1301892|emb|CAA95907.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814611|tpg|DAA10505.1| TPA: hypothetical protein YNL040W [Saccharomyces cerevisiae S288c]
          Length = 456

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 124/351 (35%), Gaps = 26/351 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---- 558
            +    +  E+    T  + E GGQ  D+G           + ++K              
Sbjct: 37  NKKGEIEGYEIELQDTILFPEGGGQPSDSGFLKIVEGNRNSSKIEKILVSHVSRFGLHAK 96

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV--SQNGSCITPDG 616
                 +    ++ + +D Q R      H+  HLL   L             G  IT   
Sbjct: 97  HHVNDYIEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKK 156

Query: 617 LRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALL 668
              + +         + +T  E+ ++ D +N +I      +       E+ +   + + +
Sbjct: 157 PVLEPSDYFNYIELNRKLTLDEITNVSDEINQLIINFPQEIIVEERIGEETVDEVSTSKI 216

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI-MLLYIVSESSIRAGIRRIEAIT 727
              Y+    V  +     G   S  C GTH+  T +I  +L + ++S++R    R+  + 
Sbjct: 217 PDDYDLSKGV--LRTIHIGDIDSNPCCGTHLKCTSQIGSILILSNQSAVRGSNSRLYFMC 274

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVE 784
           G+R   +    ++ L    + L  S+  +  ++    ++ ++L        KR  +   E
Sbjct: 275 GKRVSLYAKSVNKILLDSKNLLSCSETQISEKITRQTKQIQQLNKREQYWIKRLARTASE 334

Query: 785 DL-SCHKIADVNFMSHIISEVDSKEL-----KSVMDALQKKIQSGIIMLVG 829
           +L +  K +       +  E  + EL     K V + L+   +   I+L G
Sbjct: 335 ELMNTLKASGKKRAYFMEEEYGTLELLLQIHKEVSNFLKDDTEGYEIILCG 385


>gi|207341652|gb|EDZ69645.1| YNL040Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 456

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 124/351 (35%), Gaps = 26/351 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---- 558
            +    +  E+    T  + E GGQ  D+G           + ++K              
Sbjct: 37  NKKGEIEGYEIELQDTILFPEGGGQPSDSGFLKIVEGNRNSSKIEKILVSHVSRFGLHAK 96

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV--SQNGSCITPDG 616
                 +    ++ + +D Q R      H+  HLL   L             G  IT   
Sbjct: 97  HHLNDYIEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKK 156

Query: 617 LRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALL 668
              + +         + +T  E+ ++ D +N +I      +       E+ +   + + +
Sbjct: 157 PVLEPSDYFNYIELNRKLTLDEITNVSDEINQLIINFPQEIIVEERIGEETVDEVSTSKI 216

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI-MLLYIVSESSIRAGIRRIEAIT 727
              Y+    V  +     G   S  C GTH+  T +I  +L + ++S++R    R+  + 
Sbjct: 217 PDDYDLSKGV--LRTIHIGDIDSNPCCGTHLKCTSQIGSILILSNQSAVRGSNSRLYFMC 274

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVE 784
           G+R   +    ++ L    + L  S+  +  ++    ++ ++L        KR  +   E
Sbjct: 275 GKRVSLYAKSVNKILLDSKNLLSCSETQISEKITRQTKQIQQLNKREQYWIKRLARTASE 334

Query: 785 DL-SCHKIADVNFMSHIISEVDSKEL-----KSVMDALQKKIQSGIIMLVG 829
           +L +  K +       +  E  + EL     K V + L+   +   I+L G
Sbjct: 335 ELMNTLKASGKKRAYFMEEEYGTLELLLQIHKEVSNFLKDDTEGYEIILCG 385


>gi|323335842|gb|EGA77121.1| YNL040W-like protein [Saccharomyces cerevisiae Vin13]
 gi|323346922|gb|EGA81201.1| YNL040W-like protein [Saccharomyces cerevisiae Lalvin QA23]
 gi|323352599|gb|EGA85098.1| YNL040W-like protein [Saccharomyces cerevisiae VL3]
          Length = 452

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 119/351 (33%), Gaps = 26/351 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---- 558
            +    +  E+    T  + E GGQ  D+G           + ++K              
Sbjct: 33  NKKGEIEGYEIELQDTILFPEGGGQPSDSGFLKIVEGNRNSSKIEKILVSHVSRFGLHAK 92

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV--SQNGSCITPDG 616
                 +    ++ + +D Q R      H+  HLL   L             G  IT   
Sbjct: 93  HHVNDYIEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKK 152

Query: 617 LRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALL 668
              + +         + +T  E+ ++ D +N +I      +       E+ +   + + +
Sbjct: 153 PVLEPSDYFNYIELNRKLTLDEITNVSDEINQLIINFPQEIIVEERIGEETVDEVSTSKI 212

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG-IRRIEAIT 727
              Y+    V  +     G   S  C GTH+  T +I    I+   S   G   R+  + 
Sbjct: 213 PDDYDLSKGV--LRTIHIGDIDSNPCCGTHLKCTSQIGSTLILPNQSAVRGSNSRLYFMC 270

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVE 784
           G+R   +    ++ L    + L  S+  +  ++    ++ ++L        KR  +   E
Sbjct: 271 GKRVSLYAKSVNKILLDSKNLLSCSETQISEKITRQTKQIQQLNKREQYWIKRLARTASE 330

Query: 785 DL-SCHKIADVNFMSHIISEVDSKEL-----KSVMDALQKKIQSGIIMLVG 829
           +L +  K +       +  E  + EL     K V + L+   +   I+L G
Sbjct: 331 ELMNTLKASGKKRAYFMEEEYGTLELLLQIHKEVSNFLKDDTEGYEIILCG 381


>gi|190409032|gb|EDV12297.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|256273271|gb|EEU08212.1| YNL040W-like protein [Saccharomyces cerevisiae JAY291]
 gi|259149320|emb|CAY82562.1| EC1118_1N9_3334p [Saccharomyces cerevisiae EC1118]
          Length = 456

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 119/351 (33%), Gaps = 26/351 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---- 558
            +    +  E+    T  + E GGQ  D+G           + ++K              
Sbjct: 37  NKKGEIEGYEIELQDTILFPEGGGQPSDSGFLKIVEGNRNSSKIEKILVSHVSRFGLHAK 96

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV--SQNGSCITPDG 616
                 +    ++ + +D Q R      H+  HLL   L             G  IT   
Sbjct: 97  HHVNDYIEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKK 156

Query: 617 LRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALL 668
              + +         + +T  E+ ++ D +N +I      +       E+ +   + + +
Sbjct: 157 PVLEPSDYFNYIELNRKLTLDEITNVSDEINQLIINFPQEIIVEERIGEETVDEVSTSKI 216

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG-IRRIEAIT 727
              Y+    V  +     G   S  C GTH+  T +I    I+   S   G   R+  + 
Sbjct: 217 PDDYDLSKGV--LRTIHIGDIDSNPCCGTHLKCTSQIGSTLILPNQSAVRGSNSRLYFMC 274

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVE 784
           G+R   +    ++ L    + L  S+  +  ++    ++ ++L        KR  +   E
Sbjct: 275 GKRVSLYAKSVNKILLDSKNLLSCSETQISEKITRQTKQIQQLNKREQYWIKRLARTASE 334

Query: 785 DL-SCHKIADVNFMSHIISEVDSKEL-----KSVMDALQKKIQSGIIMLVG 829
           +L +  K +       +  E  + EL     K V + L+   +   I+L G
Sbjct: 335 ELMNTLKASGKKRAYFMEEEYGTLELLLQIHKEVSNFLKDDTEGYEIILCG 385


>gi|151944492|gb|EDN62770.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 456

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 119/351 (33%), Gaps = 26/351 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---- 558
            +    +  E+    T  + E GGQ  D+G           + ++K              
Sbjct: 37  NKKGEIEGYEIELQDTILFPEGGGQPSDSGFLKIVEGNRNSSKIEKILVSHVSRFGLHAK 96

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV--SQNGSCITPDG 616
                 +    ++ + +D Q R      H+  HLL   L             G  IT   
Sbjct: 97  HHVNDYIEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKK 156

Query: 617 LRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALL 668
              + +         + +T  E+ ++ D +N +I      +       E+ +   + + +
Sbjct: 157 PVLEPSDYFNYIELNRKLTLDEITNVSDEINQLIINFPQEIIVEERIGEETVDEVSTSKI 216

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG-IRRIEAIT 727
              Y+    V  +     G   S  C GTH+  T +I    I+   S   G   R+  + 
Sbjct: 217 PDDYDLSKGV--LRTIHIGDIDSNPCCGTHLKCTSQIGSTLILPNQSAVRGSNSRLYFMC 274

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVE 784
           G+R   +    ++ L    + L  S+  +  ++    ++ ++L        KR  +   E
Sbjct: 275 GKRVSLYAKSVNKILLDSKNLLSCSETQISEKITRQTKQIQQLNKREQYWIKRLARTASE 334

Query: 785 DL-SCHKIADVNFMSHIISEVDSKEL-----KSVMDALQKKIQSGIIMLVG 829
           +L +  K +       +  E  + EL     K V + L+   +   I+L G
Sbjct: 335 ELMNTLKASGKKRAYFMEEEYGTLELLLQIHKEVSNFLKDDTEGYEIILCG 385


>gi|154334542|ref|XP_001563518.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060539|emb|CAM42087.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 495

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 61/421 (14%), Positives = 130/421 (30%), Gaps = 70/421 (16%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV-----------HHAI 559
            +V+   +  + E GGQ  D G            D    A    +              +
Sbjct: 56  YDVILSDSILFPEGGGQPCDFGTLRVVPGDENKADSTCSATTAPLLSITNVRRVADACVL 115

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L    ++   +D+  R     +H+  HLL   +  +   H+      +T      
Sbjct: 116 TSPASLPVGTTVHQIVDWPRRIDHMQHHTGQHLLTAVVERMDTLHLPTVSWSLTHPYCFI 175

Query: 620 D-----------------VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
                             +T  K I+   +  IE   ND I  + PV   +    +    
Sbjct: 176 QVDVGAYASDPASPYHAYITKEKKISDDMVAKIEALCNDAIIHSTPVQCDVFESLEVYQQ 235

Query: 663 G--------------AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                             +  ++         +     G   S  C GTH+ +  E+  +
Sbjct: 236 EQDRRHQAAAASTGRGEEVFRSRGIPEDVTGPIRIISLGAIDSCTCCGTHLHTLAELQAM 295

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEY 767
           Y++ +      ++ +  ITG+RA        ++ + L   L        V  V+   +  
Sbjct: 296 YLLHQEVKGTMVK-LYFITGERAARQFHTMYQRERQLMPELSGSRPSEFVSVVQRRSKNT 354

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIA------DVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             L+ +  +  L+L   +      A          +     +V+          ++ ++ 
Sbjct: 355 ADLEKLVKRWTLELASAEAQRIAAAVSSRHSGTVIVPLRRDDVEL----EFFSEVRARLD 410

Query: 822 SG----IIMLVGISKEKKASVLIVVTEDLLDRF------------NAVDLARLSAKVLGG 865
           +     ++++   + E+  +  +V T+D+  +              AV LA+ + K + G
Sbjct: 411 ATGLRHVVLVSAWATERCTTGTLVNTKDVAGQVFITGGESPADMEKAVQLAKETLKGMKG 470

Query: 866 G 866
           G
Sbjct: 471 G 471


>gi|167950027|ref|ZP_02537101.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 67

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 37/54 (68%)

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G      E+G+RYIEIWNLVFMQ+ +  +     LPK S+DTGMGLER+A V+
Sbjct: 7   GGPPGTPEEDGDRYIEIWNLVFMQYNRDAEGNMTPLPKPSVDTGMGLERLAAVM 60


>gi|320166188|gb|EFW43087.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 410

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 106/311 (34%), Gaps = 30/311 (9%)

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T  + E GGQ  DTG   G    + +      A           +  L        T+D+
Sbjct: 28  TVLFPEGGGQPHDTGSVNGTVAVVAVVRKGAVA-------VHHTQSPLEPGTPAHQTVDW 80

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R      HSA HL+    S   G   +             D+   +P+T   ++ +ED
Sbjct: 81  KRRWDHMQQHSAQHLITAVASDQFGLKTTSWSL--GATKSTIDLVGERPLTDEVMQQLED 138

Query: 638 NVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            VN+IIA+   VV                             +RVVS+   D        
Sbjct: 139 KVNEIIAEGRDVVATTYQPNSPELMAVRSRGLPEDVLASGAAIRVVSIGGLD-----VNT 193

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           C GTHV ST  +  + ++   + R G  R+  + G+R R+ L      +++L        
Sbjct: 194 CCGTHVKSTAHLQTVKLLHTEASRGGS-RLHFVAGERTRALLGAMYSDMRTLGKSFTCGL 252

Query: 754 GNVVGRVEEIWE-------EYRKLQLIHAKRKLQLNVEDL----SCHKIADVNFMSHIIS 802
             VV R E   +       + + L    A+   +   E+          + V  + H   
Sbjct: 253 ELVVDRAEGAIKTSKMLGRQVKALLKEAAESAAKQLAEEAQQRTEAASGSAVVVVHHHRD 312

Query: 803 EVDSKELKSVM 813
           E D   L +V 
Sbjct: 313 EADQDYLLTVA 323


>gi|323303264|gb|EGA57062.1| YNL040W-like protein [Saccharomyces cerevisiae FostersB]
          Length = 456

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 122/351 (34%), Gaps = 26/351 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---- 558
            +    +  E+    T  + E GGQ  D+G           + ++K              
Sbjct: 37  NKKGEIEGYEIELQDTILFPEGGGQPSDSGFLKIVEGNRNSSKIEKILVSHVSRFGLHAK 96

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV--SQNGSCITPDG 616
                 +    ++   +D Q R      H+  HLL   L             G  IT   
Sbjct: 97  HHVNDYIEPGTTVEXAVDEQKRMDYMQQHTGQHLLSAILERNYKVXTVSWSMGGIITKKK 156

Query: 617 LRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALL 668
              + +         + +T  E+ ++ D +N +I      +       E+ +   + + +
Sbjct: 157 PVLEPSDYFNYIELNRKLTLDEITNVSDEINQLIINFPQEIIVEERIGEETVDEVSTSKI 216

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI-MLLYIVSESSIRAGIRRIEAIT 727
              Y+    V  +     G   S  C GTH+  T +I   L + ++S++R    R+  + 
Sbjct: 217 PDDYDLSKGV--LRTIHIGDIDSNPCCGTHLKCTSQIGSXLILXNQSAVRGSNSRLYFMC 274

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVE 784
           G+R   +    ++ L    + L  S+  +  ++    ++ ++L        KR  +   E
Sbjct: 275 GKRVSLYAKSVNKILLDSKNLLSCSETQISEKITRQTKQIQQLNKREQYWIKRLARTASE 334

Query: 785 DL-SCHKIADVNFMSHIISEVDSKEL-----KSVMDALQKKIQSGIIMLVG 829
           +L +  K +       +  E  + EL     K V + L+   +   I+L G
Sbjct: 335 ELMNTLKASGKKRAYFMEEEYGTLELLLQIHKEVSNFLKDDTEGYEIILCG 385


>gi|299747575|ref|XP_001837131.2| alanyl-tRNA synthetase domain-containing protein [Coprinopsis
           cinerea okayama7#130]
 gi|298407581|gb|EAU84748.2| alanyl-tRNA synthetase domain-containing protein [Coprinopsis
           cinerea okayama7#130]
          Length = 510

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 112/318 (35%), Gaps = 37/318 (11%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
               G  +E+V   T  + E GGQ  DTG  + +G     + +Q K +G    H +   G
Sbjct: 80  ALPPGPILELVLHDTVIFPEGGGQPTDTGKILVEGRDKLWSVLQAKRQGGHAVHYVEIPG 139

Query: 564 --------ILRTEMSLV---LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
                     +   ++       DY  R      H++ HLL   L T L           
Sbjct: 140 GDVDGVLQTFKPGTTVTVTLDDQDYNKRYDHMSMHTSQHLLSALLETRLNLPTLSWSLTS 199

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG--------- 663
            P     +V   + +TS E+ ++++  N ++ +   V   +   E++             
Sbjct: 200 YPAPCYVEV--PRGLTSDEILAVQNEANRLVFEGRRVHVEVDVLEESQPRPTDPANSRSV 257

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR-- 721
              L         R+V +E  D        C GTH+ S   + L  +    ++       
Sbjct: 258 GKGLPDDYTGGVKRIVVIEGVD-----RNPCCGTHLPSIHNLQLFLLPHTEALSRSSTTS 312

Query: 722 -RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-------KLQLI 773
            R+  + G R   HL      L   A+ L      +  R+ ++ ++ +       +L++ 
Sbjct: 313 ARLYFLAGPRLIDHLAKSHGLLTQSAALLSCGAPLLPERLGQVIDDRKRADKRVGELEIE 372

Query: 774 HAKRKLQLNVEDLSCHKI 791
            A R  Q  V+ L+  K 
Sbjct: 373 LAGRIAQDLVQKLASEKA 390


>gi|224086602|ref|XP_002195068.1| PREDICTED: hypothetical protein LOC100190320 [Taeniopygia guttata]
          Length = 537

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 105/281 (37%), Gaps = 15/281 (5%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I           ++L++D++ R      HS  HL+      + G   +          +
Sbjct: 205 CIFVPAAQEPGAEVLLSLDWERRFDHMQQHSGQHLISAIAEQMFGFKTTSWELGRQRSVI 264

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRV 676
             D      +T+ +++++E +VN+ I   +PV  R +  +D       +  L   +   V
Sbjct: 265 ELDTPL---VTAEQVEALEKSVNEKIRDRVPVTVRELAADDPEVETVKSRGLPDDHVGPV 321

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVV ++  D       LC GTHVS+  ++ ++ ++     +     +  + G R    + 
Sbjct: 322 RVVDIKGIDSN-----LCCGTHVSNLSDLQVIKLLGVEKGKKNKTNLVFLAGNRVLKSIE 376

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLIHAKRKLQLNVEDLSCHKIADV 794
                 K+L S LK   G  V  V+ +       +   ++  R + + +      K A  
Sbjct: 377 QSHSTEKALTSLLKNGPGEHVEAVKRLQSSVKLLQKNNLNLLRDIAVLIARDFKSKPAPK 436

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
                   E DS      M+ +  +I +   +L     ++K
Sbjct: 437 QLFVLHRKEGDS----EFMNIIANEIGTEETLLFLTVGDEK 473


>gi|108805363|ref|YP_645300.1| Ala-tRNA(Pro) hydrolase [Rubrobacter xylanophilus DSM 9941]
 gi|108766606|gb|ABG05488.1| Ala-tRNA(Pro) hydrolase [Rubrobacter xylanophilus DSM 9941]
          Length = 236

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 89/227 (39%), Gaps = 6/227 (2%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     V     EVV D+T FY   GGQ  D G      +R  + DV++    I      
Sbjct: 14  EFEARVVRLDGREVVLDRTAFYPGGGGQPADRGALGIGPVRAAVVDVRRAGGEIVHVLDR 73

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                +     L   +D++ R      H+A H+L   +    G+ V+  G  +  D  R 
Sbjct: 74  PIPDTV---RRLRGELDWERRYAHMRYHTALHVLSGVIWRRFGAKVT--GGQMRADRARM 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +     TS  +  IE   N  +A+  PV    + RE+A+ +              RV 
Sbjct: 129 DFSFPGEWTSEVVGEIERLTNAALAEERPVRVYELPREEALENPDLIRTQVNLVPE-RVE 187

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            V   +     +   GGTHV++T E+  + I S  S     +R+E +
Sbjct: 188 LVRVVEIEGIDTQADGGTHVANTREVGRMEITSHKSKGRRNKRVEFV 234


>gi|291459972|ref|ZP_06599362.1| putative alanyl-tRNA synthetase [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417313|gb|EFE91032.1| putative alanyl-tRNA synthetase [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 460

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 118/303 (38%), Gaps = 26/303 (8%)

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ  D G     G    +  +++K E +      +  G           +D   
Sbjct: 81  FYPEGGGQSADRGK---VGEAELLYALEEKGEVLHYLDRELMPGTYP------CRLDLDF 131

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR+ + +HS  H++   +    G H   N            +     IT  EL+ +E   
Sbjct: 132 RRRNTQSHSGEHIVSGIVHRRFGYH---NVGFHMGKDGLLTIDFDGRITEEELRELEKLS 188

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  + +N PV     +RE+       +    + ++ VR+V +E  D        C GT V
Sbjct: 189 NLAVWENHPVRILYPDREELSRLDYRSK--KELSETVRLVEIEGVD-----LCACCGTQV 241

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             +GEI L+ + S +S R G  RIE   G+ A S L+ ++E LK  A  L      +   
Sbjct: 242 EQSGEIGLIRLYSVTSRREG-CRIEMRAGESALSDLIRKEEVLKRCAVSLSAKPLELEDA 300

Query: 760 VEEIWEEYRKLQ---LIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVM 813
           ++   +E  + +       +R  ++  E L   +       + + H        EL+ + 
Sbjct: 301 LKRKQKEIFRKEGRIREQNERYFRMLSESLRRKRGEGGGSGSVLCHFERGFSEAELRELC 360

Query: 814 DAL 816
           + L
Sbjct: 361 NVL 363


>gi|56067733|gb|AAV70334.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067735|gb|AAV70335.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 162

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 1/162 (0%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           + D G  +         +V      G +V H  V  G LR    +   +D   R+    N
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMDVMRRQLTMKN 120

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           HSATH L+H+L  +LG    Q GS + P+ LRFD T+   +T
Sbjct: 121 HSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSAMT 162


>gi|313633179|gb|EFS00061.1| alanyl-tRNA synthetase [Listeria seeligeri FSL N1-067]
          Length = 57

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           + +   ++A  L +  A    GG GGGRP MAQ+GG N  +   A+  V++++K+
Sbjct: 1   DAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELGSALDYVSTWVKE 54


>gi|10639269|emb|CAC11271.1| alanyl-tRNA synthetase related protein [Thermoplasma acidophilum]
          Length = 245

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 3/227 (1%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   E VS     +V D+T FY   GGQ  DTG  + D    ++ DVQK  + +   H 
Sbjct: 17  KEFQAEVVSVDSNGIVLDRTAFYPTGGGQPNDTGIIVNDDKTYRVVDVQKHGDDVV--HI 74

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     L+    +   ID++ R      H+A H+L   +S    S     G  I  D  R
Sbjct: 75  LESVDGLKAGDRIYGKIDWERRYAHMRYHTAIHILDGIVSAKHNSEALLTGGQIYEDRSR 134

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+      T   +  I    N+ I++   V    ++RE+A+     A           +
Sbjct: 135 IDMNIEN-FTKEFVDQIIQEANEFISEGHRVYAENISREEAMKRPNLARTEPGRKLIESL 193

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             V             GGTHV++T E+  + +    +     +RIE 
Sbjct: 194 PVVRIIVIEGLDEQSDGGTHVANTREVGKIVLRKIENKGRKNKRIEF 240


>gi|116754895|ref|YP_844013.1| threonyl/alanyl tRNA synthetase, SAD [Methanosaeta thermophila PT]
 gi|116666346|gb|ABK15373.1| Ala-tRNA(Pro) hydrolase [Methanosaeta thermophila PT]
          Length = 232

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 15/223 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             +     V  D+T FY  +GGQ  D G  I      ++  V+               G+
Sbjct: 19  VTNVDDTGVYLDRTAFYPRSGGQPSDLGVLIRGDQVFRVEGVEPSE----HGICHRAHGL 74

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 +   ID++ R ++  +H+A H+L   +    G+ ++  G+ I  D  R D +  
Sbjct: 75  S-PGDKVKGEIDWERRYRIMRSHTACHVLSAVIFRETGALIT--GNQIDTDRSRVDFSL- 130

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR--VRVVSVE 682
           +    + +++     ND+I +  PV  R+M R++A+       L     +R  VRV+ +E
Sbjct: 131 ESFDRSMIETYVRMANDLIKEGHPVRVRLMTRDEAMEIPDLVRLAKNVPERESVRVIEIE 190

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             D        CGGTHV +T EI  + +V   +     RR+  
Sbjct: 191 GVD-----LQACGGTHVRNTSEIGEIRLVKAENKGKSNRRVYF 228


>gi|16082487|ref|NP_393602.1| metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Thermoplasma acidophilum DSM 1728]
          Length = 241

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 3/227 (1%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   E VS     +V D+T FY   GGQ  DTG  + D    ++ DVQK  + +   H 
Sbjct: 13  KEFQAEVVSVDSNGIVLDRTAFYPTGGGQPNDTGIIVNDDKTYRVVDVQKHGDDVV--HI 70

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     L+    +   ID++ R      H+A H+L   +S    S     G  I  D  R
Sbjct: 71  LESVDGLKAGDRIYGKIDWERRYAHMRYHTAIHILDGIVSAKHNSEALLTGGQIYEDRSR 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+      T   +  I    N+ I++   V    ++RE+A+     A           +
Sbjct: 131 IDMNIEN-FTKEFVDQIIQEANEFISEGHRVYAENISREEAMKRPNLARTEPGRKLIESL 189

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             V             GGTHV++T E+  + +    +     +RIE 
Sbjct: 190 PVVRIIVIEGLDEQSDGGTHVANTREVGKIVLRKIENKGRKNKRIEF 236


>gi|308160674|gb|EFO63149.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Giardia lamblia P15]
          Length = 401

 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 111/277 (40%), Gaps = 19/277 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
               V V    + F+ ++GGQLGD G   G  +     D   +   +       +     
Sbjct: 21  KNGNVYVRLSHSYFFPQSGGQLGDVGSIGGLPVITTNCDEDHRPLHLMATAPPSDT---E 77

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            + S+      QN    +  H  +++       I  S+       + P+    +++    
Sbjct: 78  LDCSVNAVYRRQNSISHTGQHIFSNVAEQCFQAITSSYT------MGPELSTLELSV--K 129

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRVVSVEYE 684
           +   +L  IE+  NDII Q +PV + +++ E+     SG +       N  +R+V +E  
Sbjct: 130 LDMDKLLEIENRTNDIIRQCIPVKSILIHSEEELGQYSGLSRSKLKSLNFPLRIVDIEGV 189

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D       LC GTH S+TGE  L+ +    S R G++ ++   G RA S +  + + L  
Sbjct: 190 D-----VCLCCGTHASNTGECGLVKVFGCESSRGGVK-VQFAVGDRAISLINNRLKTLSI 243

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           + + L      VV  VE +  E + L+         +
Sbjct: 244 ICASLTTGHDAVVKSVETLLSEGKALRAQEKSLIKAI 280


>gi|284165925|ref|YP_003404204.1| threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
 gi|284015580|gb|ADB61531.1| Threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
          Length = 285

 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 100/275 (36%), Gaps = 24/275 (8%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E  S     V  + + FY  + GQ  D G      +        ++A      H +    
Sbjct: 18  EVTSIDGRTVWLETSYFYGTSDGQPADRGTVGDAAVTDVRLVDGEQA------HVLAAEP 71

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
             R    ++ +ID+  R      H+A H+ + A            G  I  + +  D+  
Sbjct: 72  SFRAGHRVLCSIDWSFRMYCMRAHTAAHICYGAARR-CLESPEYAGLEIGEETVAIDL-E 129

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-----RVRV 678
           + P+    L  +++ +N  + ++ PV    +                +        RVRV
Sbjct: 130 TAPLDDEALIELDELINRTVWESRPVSWESVPVATVRERDDVVFDEERSETAVEKGRVRV 189

Query: 679 VSVEYEDG-----------GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V++  E+               + A CGGTHV +T E+  + ++  SS   G+RRIE   
Sbjct: 190 VTIGDENDTGHGMATADAREPWNVAACGGTHVRNTREVGPVTVLGCSSPAEGVRRIEFAV 249

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G +A      +     + ++ L V   +V   +E 
Sbjct: 250 GPQAIDRRTAEKRAAFAASAALDVDLEDVGDELER 284


>gi|266623642|ref|ZP_06116577.1| putative threonyl/alanyl tRNA synthetase, SAD [Clostridium
           hathewayi DSM 13479]
 gi|288864556|gb|EFC96854.1| putative threonyl/alanyl tRNA synthetase, SAD [Clostridium
           hathewayi DSM 13479]
          Length = 177

 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 59/181 (32%), Gaps = 10/181 (5%)

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G  R+  + G  A      + + +  L+  L      VV  VE++  E         + 
Sbjct: 7   KGGIRVSMLCGMDALKDYRKKQKTVTELSVMLSAKPERVVETVEKLKNENGIKDGRINRL 66

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             +L    +   + +    ++     +   +L+     L  +   G ++LV    +    
Sbjct: 67  YQELFAARMEQFQCSQEP-LAVFEEGLAPIQLRQYCTMLY-EGGRGSVVLVCSGVDGSYQ 124

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             I  +       +   L++   K L  G GGG   MAQ  G         +      +K
Sbjct: 125 YAIGSSSA-----DMRALSKTLNKELN-GRGGGSALMAQ--GTFQASKQAILETFTGLVK 176

Query: 898 K 898
           +
Sbjct: 177 E 177


>gi|13924625|gb|AAK49078.1|AF258286_1 alanyl-tRNA synthetase [Brassica oleracea]
          Length = 100

 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI    I+SE  I +GIRRIEA+ G+    ++  +D ++K L S LKV+  +V  RV+ 
Sbjct: 1   SEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKRLCSTLKVNAEDVTNRVDN 60

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + EE R  +   +  + +  V   S 
Sbjct: 61  LLEELRTARKEASDLRSKAAVYRASV 86


>gi|146332591|gb|ABQ22801.1| alanyl-tRNA synthetase-like protein [Callithrix jacchus]
          Length = 109

 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLS 859
           S   +K L   +   +        ML  +  E  K + L  V ++  +R   A +  +  
Sbjct: 5   SGASAKALNEALKLFKMHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQV 64

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +  L  G GGG+   AQ+ G N     +A+    SF +
Sbjct: 65  SG-LMDGKGGGKDVSAQATGKNVGCLQEALQLATSFAQ 101


>gi|13924628|gb|AAK49079.1|AF258287_1 alanyl-tRNA synthetase [Brassica napus]
          Length = 106

 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 45/86 (52%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI    I+SE  I +GIRRIEA+ G+    ++  +D ++K L S LKV   +V  RV+ 
Sbjct: 1   AEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKRLCSTLKVKAEDVTNRVDN 60

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + EE R  +   +  + +  V   S 
Sbjct: 61  LLEELRTARKEASDLRSKAAVYRASV 86


>gi|58258743|ref|XP_566784.1| cytoplasm protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|134106809|ref|XP_777946.1| hypothetical protein CNBA4150 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260646|gb|EAL23299.1| hypothetical protein CNBA4150 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57222921|gb|AAW40965.1| cytoplasm protein, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 523

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 143/450 (31%), Gaps = 60/450 (13%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF-- 554
           +Q   ++E   G+  EV    T  + E GGQ  DTG          ++        +   
Sbjct: 81  EQNVALKEESKGKLWEVELLDTIIFPEGGGQPSDTGVMRLLDPNGGVSHTFPIEMCLRRK 140

Query: 555 ---VHHAIVERGIL---RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
              VH   +  GI    R    + +  D+  R      H++ HLL   L T L       
Sbjct: 141 LDSVHLIRIPSGIEIDLREGREVEVEADWDRRIDQMSIHTSQHLLSAILETHLSLPTLSW 200

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA--- 665
                P      V   + +T  E   IE    + I Q   +      + D +        
Sbjct: 201 SMQPYPSIEPAYVELPRALTPEEAMGIERLCGEAIKQCKKIWVDFTIQGDDVGKENIGAG 260

Query: 666 ---ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI-- 720
                             + + +        C GT   +T  + LL+++  +   +    
Sbjct: 261 SVGTREMRGLPKDYDGGVIRHINIQDTDRNACCGTQSPNTSLLSLLHVIPPTLSNSSKPS 320

Query: 721 -RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-------EEYRKLQL 772
             ++  ++G RA   L      L + A  +   + ++V R+E          +  + L+ 
Sbjct: 321 PTKLYFLSGPRAILALQQASRTLSAAAKAVGYGRADLVERLERAEVARKDTADSLKGLRT 380

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISE---------VDSKELKSVMDALQKKIQ-- 821
             AK   +  V+  +  +   V  +               V +  L+S   + Q      
Sbjct: 381 ELAKLVGEQAVK--AGKEGKSVTLVEREEKGTHDFDWLGLVGATYLESFSASGQNTDGKT 438

Query: 822 --SGIIMLVGI----SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
             S +I+L       S   +  +LI   ++ L ++    +    A  + GGG        
Sbjct: 439 PPSPLIILTSSITPASTTSQTLLLIQSPDNDLAKYVNEKIKTALAGRVKGGG-------- 490

Query: 876 QSGGPNGNKAD--------QAIAGVASFLK 897
            + G   +K D         A+A V   L+
Sbjct: 491 -ARGRYMSKIDGKWGKIEKDALAKVIDDLR 519


>gi|13924622|gb|AAK49077.1|AF258285_1 alanyl-tRNA synthetase [Brassica rapa]
          Length = 103

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI  + I+SE  I +GIRRIEA+ G+    ++  +D ++K L S LKV   +V  RV+ 
Sbjct: 1   SEIRAVKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKRLCSTLKVKAEDVTNRVDN 60

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + EE R  +   +  + +  V   S 
Sbjct: 61  LLEELRTARKEASDLRSKAAVYRASV 86


>gi|56067697|gb|AAV70316.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 160

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 1/160 (0%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  V A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKVVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           + D G  +         +V      G +V H  V  G LR    +   +D   R+    N
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMDVMRRQLTMKN 120

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           HSATH L+H+L  +LG    Q GS + P+ LRFD T+   
Sbjct: 121 HSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSA 160


>gi|324528305|gb|ADY48898.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 174

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 57/144 (39%), Gaps = 7/144 (4%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII-SEVDSKE 808
           K         ++++ ++  +        K+    + L         F+ H+       K 
Sbjct: 19  KDEIREEAKGIQKLLDKLERDAKAAVTEKVMNEAKQLEGTLNDHTKFIVHVFGKGATGKA 78

Query: 809 LKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTED-LLDRFNAVDLARLSAKVLGGG 866
           L + + +L+K      +M   +++E  K +++  V +  +     A +      +V+ GG
Sbjct: 79  LDAALKSLKKA---PAVMGFSVNEETGKVTIVAKVDKASVAAGLKAPEWISKVCEVV-GG 134

Query: 867 GGGGRPHMAQSGGPNGNKADQAIA 890
            GGG+   AQ+ G   ++  +A+ 
Sbjct: 135 RGGGKDMQAQATGDRIDRVPEAVQ 158


>gi|56067669|gb|AAV70302.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067671|gb|AAV70303.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067743|gb|AAV70339.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 161

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 1/161 (0%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           + D G  +         +V      G +V H  V  G LR    +   +D   R+    N
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMDVMRRQLTMKN 120

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           HSATH L+H+L  +LG    Q GS + P+ LRFD T+   +
Sbjct: 121 HSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSAM 161


>gi|56067661|gb|AAV70298.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067663|gb|AAV70299.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067741|gb|AAV70338.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067745|gb|AAV70340.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067747|gb|AAV70341.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 161

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 1/161 (0%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           + D G  +         +V      G +V H  V  G LR    +   +D   R+    N
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMDVVRRQLTMKN 120

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           HSATH L+H+L  +LG    Q GS + P+ LRFD T+   +
Sbjct: 121 HSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSAM 161


>gi|56067665|gb|AAV70300.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067667|gb|AAV70301.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067675|gb|AAV70305.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067687|gb|AAV70311.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067703|gb|AAV70319.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067729|gb|AAV70332.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067731|gb|AAV70333.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 160

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 1/160 (0%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           + D G  +         +V      G +V H  V  G LR    +   +D   R+    N
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMDVMRRQLTMKN 120

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           HSATH L+H+L  +LG    Q GS + P+ LRFD T+   
Sbjct: 121 HSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSA 160


>gi|56067679|gb|AAV70307.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 160

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 1/160 (0%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  V A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKVVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           + D G  +         +V      G +V H  V  G LR    +   +D   R+    N
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMDVVRRQLTMKN 120

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           HSATH L+H+L  +LG    Q GS + P+ LRFD T+   
Sbjct: 121 HSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSA 160


>gi|83816272|ref|YP_445267.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83757666|gb|ABC45779.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 260

 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 85/227 (37%), Gaps = 8/227 (3%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                       +V D T FY E GGQ  D G    DG    + DVQK+   +  +    
Sbjct: 36  FTASVTDATDDYIVLDGTYFYPEGGGQPADHGTLHWDGGSAPVVDVQKEHGAVRHYIDDR 95

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E             ID   RR L   H+A H+L   +  +        G+ I  D  R D
Sbjct: 96  EGERPEQGDEATGQIDEARRRTLRRMHTAQHVLSKVV--LDVFGAQTAGNQIHTDRSRID 153

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE--DAIASGAAALLGTKYNDRVRV 678
                  +  ++  IE+  N  I Q+LPV  + M R   +        LL    +    +
Sbjct: 154 F-EPADFSEEDVAVIEERTNTAIEQDLPVEKKEMERARAEEHTPEGRGLLNLIPDHVDPL 212

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             V+    G      CGGTHV  T +I  + I + +S  A + RIE 
Sbjct: 213 RMVQ---IGDLDLCPCGGTHVDRTRDIGRIRITNRTSKGAEVDRIEF 256


>gi|320100428|ref|YP_004176020.1| Ala-tRNA(Pro) hydrolase [Desulfurococcus mucosus DSM 2162]
 gi|319752780|gb|ADV64538.1| Ala-tRNA(Pro) hydrolase [Desulfurococcus mucosus DSM 2162]
          Length = 238

 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 7/230 (3%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           +++ + V EAV G K  V  D+T F+  +GG   DTG  I   +R+++ +V    E   V
Sbjct: 12  IKECDAVVEAVQGNK--VFLDRTVFHPRSGGVENDTGFIIAGDVRVRVLNVYYDKETGDV 69

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
            H + +   +     + L +D+  R +L   H+A H+L       +       G  ITP+
Sbjct: 70  AHEVDDASSITIGSRVKLLLDWDRRYRLMRLHTAAHVLSAV--MYMDHGALITGGNITPE 127

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
               D +  +  +S   +      N+I+A+N+ V    + RE+A+       L  +    
Sbjct: 128 YGYDDYSL-QTFSSGVFEEAVRKANEIVARNIEVKVYWLPREEAMRIPGVVKLAGRMPPN 186

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           V  + +    G        GG HV  T EI ++ ++   +     +R+  
Sbjct: 187 VEKLRIVEIPGVD--IQADGGPHVRHTSEIGVIKLLRTENKGKNKKRLYF 234


>gi|302687664|ref|XP_003033512.1| hypothetical protein SCHCODRAFT_234457 [Schizophyllum commune H4-8]
 gi|300107206|gb|EFI98609.1| hypothetical protein SCHCODRAFT_234457 [Schizophyllum commune H4-8]
          Length = 491

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 102/292 (34%), Gaps = 19/292 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH------- 556
           E  +G  + V+   T  + E GGQ  DTG         ++   ++       +       
Sbjct: 78  ELPTGPILGVLLHDTVIFPEGGGQPTDTGSIRVGDKDWEVVQCKRDGGHAIHYVRVPEGT 137

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
                         + ++ D++ R      H++ HLL   L T L            P  
Sbjct: 138 SVDDALATFAPGTPVKVSFDWERRYDHMTLHTSQHLLSALLETRLQLPTLSWSLTSYPQP 197

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL----GTKY 672
              +V   + +T  E+ SI++  N ++ +   V   +   E  +    +        + Y
Sbjct: 198 CYVEV--PRSMTQEEIASIQNEANRLVFEGRQVHVEVQEMESKMEGDGSRAFGRGLPSDY 255

Query: 673 NDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              V RV+ ++  D        C GTH+ S   + L  +    ++     R+  + G R 
Sbjct: 256 TGGVHRVIVIDGVD-----RNPCCGTHLPSLHNLQLFLLPHTDALSRSTTRLYFLAGPRL 310

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
            +HL     +L + AS L      V  RV  + E+ ++        + +L  
Sbjct: 311 IAHLAAAHAQLTAAASTLTCGLPEVPARVALVVEDRKRADKRVTDVEGELAS 362


>gi|56067673|gb|AAV70304.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067677|gb|AAV70306.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067681|gb|AAV70308.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067683|gb|AAV70309.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067685|gb|AAV70310.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067699|gb|AAV70317.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067701|gb|AAV70318.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067705|gb|AAV70320.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067707|gb|AAV70321.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067709|gb|AAV70322.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067711|gb|AAV70323.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067717|gb|AAV70326.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067719|gb|AAV70327.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067725|gb|AAV70330.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067727|gb|AAV70331.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067737|gb|AAV70336.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067739|gb|AAV70337.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 160

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 1/160 (0%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           + D G  +         +V      G +V H  V  G LR    +   +D   R+    N
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMDVVRRQLTMKN 120

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           HSATH L+H+L  +LG    Q GS + P+ LRFD T+   
Sbjct: 121 HSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSA 160


>gi|50288005|ref|XP_446431.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525739|emb|CAG59358.1| unnamed protein product [Candida glabrata]
          Length = 456

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 61/397 (15%), Positives = 139/397 (35%), Gaps = 38/397 (9%)

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE--VVFDQTPFYAEAGGQLGDTG 532
           + CQ+ P  L +  ++++  +    +  ++ + G++    +  + T  + E GGQ  DTG
Sbjct: 12  LKCQREPFLLEDFETNVISCVKVDSKTAKKFLIGKEATHVLELEDTILFPEGGGQPSDTG 71

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    +  +V K           V++  +     + L +D + R      H+  HL
Sbjct: 72  YVTLRDDETKRINVVKVVREGLHAKHYVDQA-IEPGSKISLHVDKEKRLDYMQQHTGQHL 130

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI----------TSAELKSIEDNVNDI 642
           L   L     +  + + S       +  +                +  E+  I D  N+I
Sbjct: 131 LSAILDNYYDNADTLSWSMGGIPSTKKPILEPSDYLNYLELPRKLSKDEISEITDKFNEI 190

Query: 643 IAQNLPVVT--RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           ++ N+  +T    +  E + +    +      +    +  +   + G      C GTH++
Sbjct: 191 VSTNVMPITVKETIAVEKSESIEDVSTKKIPDDYDYTLGVLRTINIGELDKNPCCGTHLT 250

Query: 701 STGEIMLLYIVSESSIRAGI-RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           +T ++  + I+   S   G   R+  + G+R   +     + + S    L  S+  +  +
Sbjct: 251 ATSQVQSILILDNQSTVRGTNSRLYFMCGKRVSLYAKMLTDYISSAKVELSCSESQISSK 310

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVD-----SKEL 809
           V  + E  +K +        Q+   +      S  +   +  +      +D      KE 
Sbjct: 311 VVALKENLQKAKKKEQYFISQIAKFEGERLYQSLEEGKQLYVLKDEFGSLDLLLAIQKEF 370

Query: 810 KSVMDALQKKIQ------------SGIIMLVGISKEK 834
           + + D   K  +             G ++++    EK
Sbjct: 371 QELCDKNSKNCELLILCGRERASLMGSVVIISPDGEK 407


>gi|15897381|ref|NP_341986.1| hypothetical protein SSO0450 [Sulfolobus solfataricus P2]
 gi|284173278|ref|ZP_06387247.1| hypothetical protein Ssol98_01285 [Sulfolobus solfataricus 98/2]
 gi|74557376|sp|Q97ZX2|ALAXM_SULSO RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           AltName: Full=Alanyl-tRNA deacylase AlaX-M
 gi|13813606|gb|AAK40776.1| Alanyl-tRNA synthetase truncated homolog (alaS-like1) [Sulfolobus
           solfataricus P2]
 gi|261602058|gb|ACX91661.1| Alanyl-tRNA synthetase, class IIc-like protein [Sulfolobus
           solfataricus 98/2]
          Length = 236

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 7/229 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     V  +   V+ D+T FY   GG   DTG  + +          K+ E   + H 
Sbjct: 13  KEFEGRVVRIEGNYVILDKTAFYPGGGGLDNDTGFLVNEKGERISVTEVKRGENGEILHK 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           I + G L     ++ TID+  R ++   H+A+H++        G+ ++  G  I+P+  +
Sbjct: 73  IDQNGSLNVNEKVIGTIDWDRRYRMMRLHTASHIVAALAYRKFGALIT--GGHISPEQAK 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D       T  E   + +  N+II +++ +    + RE+A+   A   L  +   ++ +
Sbjct: 131 DDFNVENKDTLIE---LINEANEIIKKDIELKIYFLPREEALMIPAIVKLAGRNPPQIPI 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             +    G        GG HV +T EI  + ++   +   G +R+    
Sbjct: 188 WRIVEIPG--IDIQADGGPHVKNTKEIGEIVLLKVENKGKGRKRVYYTV 234


>gi|170581994|ref|XP_001895931.1| hypothetical protein Bm1_22375 [Brugia malayi]
 gi|158596974|gb|EDP35222.1| hypothetical protein Bm1_22375 [Brugia malayi]
          Length = 75

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVP 45
          +   IR +FLE+F+++ H  +PSSS+IP +D ++ F N+GM  
Sbjct: 26 SAQQIRLSFLEYFKEHNHTYVPSSSVIPEDDSSVTFVNAGMNQ 68


>gi|294507136|ref|YP_003571194.1| Alanyl-tRNA synthetase [Salinibacter ruber M8]
 gi|294343464|emb|CBH24242.1| Alanyl-tRNA synthetase [Salinibacter ruber M8]
          Length = 240

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 85/227 (37%), Gaps = 8/227 (3%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                       +V D T FY E GGQ  D G    DG    + DVQK+   +  +    
Sbjct: 16  FTASVTDATDDYIVLDGTYFYPEGGGQPADHGTLHWDGGSAPVVDVQKEHGAVRHYIDDR 75

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E             ID   RR L   H+A H+L   +  +        G+ I  D  R D
Sbjct: 76  EGERPEQGDEATGQIDEARRRTLRRMHTAQHVLSKVV--LDVFGAQTAGNQIHTDRSRID 133

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE--DAIASGAAALLGTKYNDRVRV 678
                  +  ++  IE+  N  I Q+LPV  + M R   +        LL    +    +
Sbjct: 134 F-EPADFSEEDVAVIEERTNTAIEQDLPVEKKEMERARAEEHTPEGRGLLNLIPDHVDPL 192

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             V+    G      CGGTHV  T +I  + I + +S  A + RIE 
Sbjct: 193 RMVQ---IGDLDLCPCGGTHVDRTRDIGRIRITNRTSKGAEVDRIEF 236


>gi|254167770|ref|ZP_04874620.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|289597105|ref|YP_003483801.1| Threonyl/alanyl tRNA synthetase SAD [Aciduliprofundum boonei T469]
 gi|197623298|gb|EDY35863.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|289534892|gb|ADD09239.1| Threonyl/alanyl tRNA synthetase SAD [Aciduliprofundum boonei T469]
          Length = 387

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 133/391 (34%), Gaps = 36/391 (9%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E    +  + +   T  Y   GGQ  D G AI +G    I           +     E  
Sbjct: 15  EVEERKGNKCLLSDTILYPGGGGQPPDEGIAICNGEEFSIK---------HIGSLWHEID 65

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +     + + +++  R  L  +H+A    H     +               G    +  
Sbjct: 66  GICKCDKMKIILNWDRRYLLMRSHTAE---HTFFRFLENKGAKMG---KIALGEVSSIIF 119

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVE 682
              I++ ++   E    ++I +   V T  +N+++        +   +  D  +RVV +E
Sbjct: 120 QGDISAEDILDAEKRTRELIKEGRNVSTFWINKDEIRNYPDLRIKLERIKDEKIRVVKIE 179

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR-IEAITGQRARSHLMGQDEK 741
             D      + C G H+S+  EI    IV     R G R+ ++ + G+ AR++     + 
Sbjct: 180 GHD-----LSACKGVHISNLSEIEDFAIV---HFRMGKRKEVKFVIGEMARNYHYRASQS 231

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           L+ L     +    +   +E +  E    +++    +        +  K  ++      +
Sbjct: 232 LRKLMWKRNLDMDKIENYLENLENEN---EIMRKALRDASKDAKFNVEKCGEIELHYLFL 288

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
              + K ++     +    ++ ++  +G S       +         R    +   L + 
Sbjct: 289 PYAEKKIIQRKALEIANHNKAVVVYGIGESN---VVCIAYNPSYPWAR---NEYMGLLS- 341

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +  G GGG+ +       +  K  + +  +
Sbjct: 342 -MMNGRGGGKGNFVSGSVEDAKKFVEELKKI 371


>gi|261349361|gb|ACX71240.1| alanyl-tRNA synthetase [Streptococcus suis]
          Length = 97

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRK 778
            RRI A+TG+ A      Q++ LK +A+ +K  Q   V  +VE + ++ R LQ  +   K
Sbjct: 1   TRRIVAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESLAQQVRDLQKENTALK 60

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELK 810
            +                  + +++  +   D+  L+
Sbjct: 61  EKATAAAAGDVFKDVKDANGIRYIASQVQVSDAGALR 97


>gi|253741613|gb|EES98479.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Giardia intestinalis ATCC 50581]
          Length = 398

 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 116/276 (42%), Gaps = 16/276 (5%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E V  A +G  V V   Q+ F+ ++GGQLGDTG   G  +         +   +      
Sbjct: 15  EAVLPAKNG-NVYVRLSQSYFFPQSGGQLGDTGSIGGLPVITTSCGEGHQPLHLMAT--- 70

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                   ++ L   +D   RRQ SI+H+  H+           + + +   +  +    
Sbjct: 71  ----APPEDVELSCIVDATYRRQNSISHTGQHVFSSVAERRF--NAATSSYTMGAELSTL 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           +++    ++  EL  IE+  NDII Q +PV + ++  E+ +            +    + 
Sbjct: 125 ELSI--KLSMDELLEIENQANDIIRQCIPVKSTLVYSEEELGRYPEISRSKLKSLNFPLR 182

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            V   D     + LC GTH S+TGE  L+ + +  S R G++ ++   G RA S +  + 
Sbjct: 183 IV---DIANVDTCLCCGTHASNTGECGLVKVFACESSRGGVK-VQFAVGDRALSLINKRL 238

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
             L ++ + L     +V+  VE +  E + L+    
Sbjct: 239 MTLSTVCASLTTGHDSVIKSVEALQAESKALRTQEK 274


>gi|254167237|ref|ZP_04874090.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|197624093|gb|EDY36655.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
          Length = 387

 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 61/391 (15%), Positives = 133/391 (34%), Gaps = 36/391 (9%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E    +  + +   T  Y   GGQ  D G AI +G    I           +     E  
Sbjct: 15  EVEERKGNKCLLSDTILYPGGGGQPLDEGIAICNGEEFSIK---------HIGSLWHEID 65

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +     + + +++  R  L  +H+A    H     +               G    +  
Sbjct: 66  GICKCDKMKIILNWDRRYLLMRSHTAE---HTFFRFLENKGAKMG---KIALGEVSSIIF 119

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVE 682
              IT+ ++   E    ++I +   V T  +N+++        +   +  D  +RVV +E
Sbjct: 120 QGDITTEDILDAEKRTRELIKEGRNVTTFWINKDEIRNYPDLRIKLERIKDEKIRVVKIE 179

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR-IEAITGQRARSHLMGQDEK 741
             D      + C G H+S+  EI    IV     R G R+ ++ + G+ AR++     + 
Sbjct: 180 GHD-----LSACKGVHISNLSEIEDFAIV---HFRMGKRKEVKFVIGEMARNYHYRASQS 231

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           L+ L     +    +   +E +  E    +++    +        +  K  ++      +
Sbjct: 232 LRKLMWKRNLDMDKIENYLENLENEN---EIMRKALRDASKDTKFNVEKCGEIELHYLFL 288

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
              + K ++     +    ++ ++  +G S       +         R    +   L + 
Sbjct: 289 PYAEKKIIQRKALEIANHNKAVVVYGIGESN---VVCIAYNPSYPWAR---NEYMGLLS- 341

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +  G GGG+ +       +  K  + +  +
Sbjct: 342 -MMNGRGGGKGNFVSGSVEDAKKFVEELKKI 371


>gi|196038963|ref|ZP_03106270.1| alanyl-tRNA synthetase domain protein [Bacillus cereus NVH0597-99]
 gi|196030108|gb|EDX68708.1| alanyl-tRNA synthetase domain protein [Bacillus cereus NVH0597-99]
          Length = 236

 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +   V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNTVFVKETVFYPTGGGQECDTGVIVQDGFVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|13541032|ref|NP_110720.1| metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Thermoplasma volcanium GSS1]
 gi|14324415|dbj|BAB59343.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 242

 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     +  ++  ++ D+T FY   GGQ  DTG     G   ++ DV K  + +     
Sbjct: 13  KEFDGNVIEVKENRLILDRTAFYPTGGGQPNDTGVIFCCGKEYRVNDVTKDGDEVIHVVD 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                       +  TID+  R      H+A H++   ++ + GS     G  I  D  R
Sbjct: 73  DSTGLS--AGAKVHGTIDWDRRYAHMRYHTAIHVIDGVVNVMHGSEALLTGGQIYEDRAR 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT-----KYN 673
            D+      T   +  I +  N  + +   V   I+ +E+AI     A         +  
Sbjct: 131 IDMNIEN-FTKEFVDKIIEESNSFMKEGHRVYPDILTKEEAIKRPNLARTEPGRKLIETL 189

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             VR++ +E  D         GGTHVS+T E+  +++    +     +RIE 
Sbjct: 190 PEVRIIVIEGLDE-----QSDGGTHVSNTKEVGTIFVRKIENKGKRNKRIEF 236


>gi|218883373|ref|YP_002427755.1| Threonyl/alanyl tRNA synthetase [Desulfurococcus kamchatkensis
           1221n]
 gi|218764989|gb|ACL10388.1| Threonyl/alanyl tRNA synthetase [Desulfurococcus kamchatkensis
           1221n]
          Length = 235

 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 6/228 (2%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH- 557
            E +    + +   V  D+T F+  +GG   DTG  + +   +++ +V    E   V H 
Sbjct: 9   KEYMATIKAIKGSRVFLDKTIFHPRSGGVENDTGYMVFNEGMVRVVNVYYDKESGDVAHE 68

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                 + +   S+ L +D++ R +L   H+A H+L          +    G  ITP+  
Sbjct: 69  VDNASLLPQPGSSVKLVLDWERRYRLMRLHTAAHILSAI--MYTNYNALITGGNITPEYG 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D + ++  +    +      N+++A+N+ V    + RE+A+       L +K    V 
Sbjct: 127 YDDYSLTE-FSREIFEEAVKKANEVVARNIEVKIYWLPREEALRIPGVVKLASKMPPEVE 185

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            + +    G        GG HV STGEI ++ ++   +     +R+  
Sbjct: 186 KLRIVEIPGVD--IQADGGPHVKSTGEIGVIKLLRVENKGKNKKRLYF 231


>gi|170290573|ref|YP_001737389.1| threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174653|gb|ACB07706.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 240

 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 10/230 (4%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           +++ E V  AV G KV +  D+T FY   GG   D G  +      ++ +V+K++  ++ 
Sbjct: 17  LKEFEAVVRAVEGDKVSL--DRTAFYPSGGGLPSDVGKLLRGEEEFEVIEVRKESGNVWH 74

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
                         ++   +D+  R ++   H+A H L   L++  G  V+  G+ +  D
Sbjct: 75  TVGRPGL---TVGDAVRGILDWDKRYRIMRMHTALHALIALLNSKYGVLVT--GNNVGYD 129

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             R DV   +      ++ +    N ++++   V    ++RE+A+       L       
Sbjct: 130 RSRVDVNL-ERPDRELVEEVIAETNKLLSEGREVKIYYLSREEAMKIPGIIKLAKALPPD 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           V  + +   +G        GG HV +T EI  +  +   +     RRI  
Sbjct: 189 VDKLRIVEIEG--IDIQADGGPHVRNTREIGEIVFLGMENKGKNNRRIHF 236


>gi|30261778|ref|NP_844155.1| alanyl-tRNA synthetase domain-containing protein [Bacillus
           anthracis str. Ames]
 gi|47527011|ref|YP_018360.1| alanyl-tRNA synthetase domain-containing protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49184612|ref|YP_027864.1| alanyl-tRNA synthetase domain-containing protein [Bacillus
           anthracis str. Sterne]
 gi|65319055|ref|ZP_00392014.1| COG2872: Predicted metal-dependent hydrolases related to
           alanyl-tRNA synthetase HxxxH domain [Bacillus anthracis
           str. A2012]
 gi|165869526|ref|ZP_02214185.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0488]
 gi|167633249|ref|ZP_02391574.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0442]
 gi|167638818|ref|ZP_02397093.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0193]
 gi|170686273|ref|ZP_02877495.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0465]
 gi|170706590|ref|ZP_02897050.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0389]
 gi|177650513|ref|ZP_02933480.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0174]
 gi|190566371|ref|ZP_03019289.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815454|ref|YP_002815463.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str. CDC
           684]
 gi|229600184|ref|YP_002866165.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0248]
 gi|254683275|ref|ZP_05147136.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723858|ref|ZP_05185644.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A1055]
 gi|254734628|ref|ZP_05192340.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741037|ref|ZP_05198725.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Kruger B]
 gi|254755280|ref|ZP_05207314.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Vollum]
 gi|254759817|ref|ZP_05211841.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Australia 94]
 gi|30256006|gb|AAP25641.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Ames]
 gi|47502159|gb|AAT30835.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49178539|gb|AAT53915.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Sterne]
 gi|164714966|gb|EDR20484.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0488]
 gi|167513282|gb|EDR88653.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0193]
 gi|167531287|gb|EDR93965.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0442]
 gi|170128688|gb|EDS97555.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0389]
 gi|170669970|gb|EDT20711.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0465]
 gi|172083657|gb|EDT68717.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0174]
 gi|190562506|gb|EDV16473.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006687|gb|ACP16430.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str. CDC
           684]
 gi|229264592|gb|ACQ46229.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0248]
          Length = 236

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGFVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|159041822|ref|YP_001541074.1| threonyl/alanyl tRNA synthetase SAD [Caldivirga maquilingensis
           IC-167]
 gi|157920657|gb|ABW02084.1| Threonyl/alanyl tRNA synthetase SAD [Caldivirga maquilingensis
           IC-167]
          Length = 242

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 8/232 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E+  + ++     V+ D+T  +  +GG + DTG  I  G + +I D   K +   V H 
Sbjct: 14  KEVDAKVIAVDGSNVILDKTIIHPSSGGVVHDTGLIITKGEQYRIIDAVHKRDTDDVIHV 73

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     L+    + + +D+  R +L   H+A+H++     +   + V+            
Sbjct: 74  LDRSPQLKYGDDVKVVLDWDRRYRLMRLHTASHIMAGIAYSKYNALVTGGDIQPDYARDD 133

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT---KYNDR 675
           + +T            I    N+I+ + + V    M RE+A+       L        D+
Sbjct: 134 YSLTAGGEELRRIFNEIVTEANEIVKKGIEVKVYWMPREEALKVPGIVKLAEREPPPGDK 193

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            R+V +   D         GG HV++T EI  + I    +     +RI    
Sbjct: 194 WRIVEIPGVD-----VQADGGPHVANTREIGEIIIQKIENRGRNKKRIYFTV 240


>gi|238620148|ref|YP_002914974.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.16.4]
 gi|238381218|gb|ACR42306.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.16.4]
          Length = 236

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 7/229 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     V  +   V+ D+T FY   GG   DTG  I +          K+ E   + H 
Sbjct: 13  KEFEGRVVKIEDSYVILDKTAFYPGGGGLENDTGFLINERGEKINVTEAKRGENGEILHK 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           I +   L     ++  I+++ R ++   H+A+H++               G  I+P+  +
Sbjct: 73  IDQNASLNVGDKVIGKINWERRYRMMRLHTASHIVAALA--YSKFGALITGGHISPEQAK 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D       T  E   + +  N+I+ + + +    + RE+A+   A   L  +   ++ +
Sbjct: 131 DDFNVENKDTLIE---LINEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIPI 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             +    G        GG HV++T EI  + ++   +   G +R+    
Sbjct: 188 WRIVEIPG--IDIQADGGPHVNNTKEIGEIVLLKVENKGKGRKRVYYTV 234


>gi|229195986|ref|ZP_04322738.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus m1293]
 gi|228587368|gb|EEK45434.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus m1293]
          Length = 236

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  ++ +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEENKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVQKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVKEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|56067723|gb|AAV70329.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 147

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 1/147 (0%)

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
              +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +     
Sbjct: 1   AQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDE 60

Query: 541 LQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
               +V      G +V H  V  G LR    +   +D   R+    NHSATH L+H+L  
Sbjct: 61  SSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMDVMRRQLTMKNHSATHALNHSLLK 120

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP 626
           +LG    Q GS + P+ LRFD T+   
Sbjct: 121 VLGQDTDQRGSLVVPEKLRFDFTNKSA 147


>gi|196045110|ref|ZP_03112343.1| alanyl-tRNA synthetase domain protein [Bacillus cereus 03BB108]
 gi|196024112|gb|EDX62786.1| alanyl-tRNA synthetase domain protein [Bacillus cereus 03BB108]
          Length = 236

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R +L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHKLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|196033490|ref|ZP_03100902.1| alanyl-tRNA synthetase domain protein [Bacillus cereus W]
 gi|195993924|gb|EDX57880.1| alanyl-tRNA synthetase domain protein [Bacillus cereus W]
          Length = 236

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGFVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVQNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|206974976|ref|ZP_03235891.1| alanyl-tRNA synthetase domain protein [Bacillus cereus H3081.97]
 gi|217959256|ref|YP_002337804.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH187]
 gi|229138474|ref|ZP_04267063.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-ST26]
 gi|206746995|gb|EDZ58387.1| alanyl-tRNA synthetase domain protein [Bacillus cereus H3081.97]
 gi|217066743|gb|ACJ80993.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH187]
 gi|228645011|gb|EEL01254.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-ST26]
          Length = 236

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  ++ +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEENKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVQKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVKEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|56067749|gb|AAV70342.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067751|gb|AAV70343.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 147

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 1/147 (0%)

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
             +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +      
Sbjct: 1   QYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDES 60

Query: 542 QITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
              +V      G +V H  V  G LR    +   +D   R+    NHSATH L+H+L  +
Sbjct: 61  SEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMDVVRRQLTMKNHSATHALNHSLLKV 120

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPI 627
           LG    Q GS + P+ LRFD T+   +
Sbjct: 121 LGQDTDQRGSLVVPEKLRFDFTNKSAM 147


>gi|228945376|ref|ZP_04107731.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814348|gb|EEM60614.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 236

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGFVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                 S+ L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGSVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|47565442|ref|ZP_00236483.1| alanyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47557432|gb|EAL15759.1| alanyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 236

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  ++ +   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKIKNEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|229090738|ref|ZP_04221971.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock3-42]
 gi|300117305|ref|ZP_07055095.1| alanine--tRNA ligase [Bacillus cereus SJ1]
 gi|228692680|gb|EEL46406.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock3-42]
 gi|298725140|gb|EFI65792.1| alanine--tRNA ligase [Bacillus cereus SJ1]
          Length = 236

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|157866854|ref|XP_001681982.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125433|emb|CAJ03293.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 491

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/421 (13%), Positives = 130/421 (30%), Gaps = 70/421 (16%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD---VQKKAEGIFVHHAIVERGIL-- 565
            +VV   +  + E GGQ  D G            D       A  + + +          
Sbjct: 52  YDVVLSDSVLFPEGGGQPCDHGTLRVVSGDNDKADPSCDATAAPPLSITNVRRVGDTCIL 111

Query: 566 ------RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     ++   +D+  R     +H+  HLL   +       +      +T      
Sbjct: 112 TSPAALPVGATVHQMVDWPRRMDHMQHHTGQHLLTAVVERKDTLRLPTVSWSLTHPYCFI 171

Query: 620 D-----------------VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
                             +T  K I+   +  IE   ND IA +  V   +    +    
Sbjct: 172 QVDVGGYASDPASPYHAYITKEKKISDEMVAKIEALCNDAIAHSTTVQCDVFENREVYMR 231

Query: 663 --------------GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                         G A    ++         +         S  C GTH+ +  E+  +
Sbjct: 232 EQDRRHQAAAVSADGGAEAFRSRGIPEDVTGPIRIISLDAIDSCTCCGTHLHTLAELQAM 291

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL-KVSQGNVVGRVEEIWEEY 767
           Y++ +      ++ +  ITG+RA        ++ + L   L      + V  V+   ++ 
Sbjct: 292 YLLHQEVKGTLVK-LYFITGERAAQQFHAMYQRERQLMPELGGSRPDDFVSVVQRRSKDA 350

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII------SEVDSKELKSVMDALQKKIQ 821
             L+ +  +  L+L   +      A     +  +       +VD        + ++ +++
Sbjct: 351 TDLEKLMKRWTLELASVEAQRIAAAVPASHAATVMVPLRRDDVDL----EFFNEVRARLE 406

Query: 822 SG----IIMLVGISKEKKASVLIVVTEDLLDRF------------NAVDLARLSAKVLGG 865
           +     ++++   + E+  +  +   +D+  +              AV L + + + + G
Sbjct: 407 AAGLRRVVLVSAWAAERCTAGTLASAKDVAGQVFVTGGETPADMEKAVQLVKETLQGMKG 466

Query: 866 G 866
           G
Sbjct: 467 G 467


>gi|228984858|ref|ZP_04145028.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774808|gb|EEM23204.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 236

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTVINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|284998171|ref|YP_003419938.1| Threonyl/alanyl tRNA synthetase, SAD [Sulfolobus islandicus
           L.D.8.5]
 gi|284446066|gb|ADB87568.1| Threonyl/alanyl tRNA synthetase, SAD [Sulfolobus islandicus
           L.D.8.5]
          Length = 236

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 7/229 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     V  +   V+ D+T FY   GG   DTG  I +          K+ E   + H 
Sbjct: 13  KEFEGRVVKIEDSYVMLDKTAFYPGGGGLENDTGFLINERGEKINVIEAKRGENGEILHK 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           I +   L     ++  I+++ R ++   H+A+H++               G  I+P+  +
Sbjct: 73  IDQNASLNVGDKVIGKINWERRYRMMRLHTASHIVAALA--YSKFGALITGGHISPEQAK 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D       T  E   + +  N+I+ + + +    + RE+A+   A   L  +   ++ +
Sbjct: 131 DDFNVENKDTLIE---LINEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIPI 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             +    G        GG HV++T EI  + ++   +   G +R+    
Sbjct: 188 WRIVEMPG--IDIQADGGPHVNNTKEIGEIVLLKVENKGKGRKRVYYTV 234


>gi|229155344|ref|ZP_04283454.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 4342]
 gi|228628059|gb|EEK84776.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 4342]
          Length = 236

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFIKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|56067721|gb|AAV70328.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 147

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 1/147 (0%)

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
              +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +     
Sbjct: 1   AQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDE 60

Query: 541 LQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
               +V      G +V H  V  G LR    +   +D   R+    NHSATH L+H+L  
Sbjct: 61  SSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMDVVRRQLTMKNHSATHALNHSLLK 120

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP 626
           +LG    Q GS + P+ LRFD T+   
Sbjct: 121 VLGQDTDQRGSLVVPEKLRFDFTNKSA 147


>gi|47188969|emb|CAF93329.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 303

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTED-LLDRFNAVDLARLSAKVL 863
           S+ L   +  L+ +      ML  +  E  K + L  V ++       A +  +    +L
Sbjct: 206 SQALNESLKLLKAQSPQTAAMLFTVDPEAGKVTCLCQVPQETASRGLKASEWVQDLCPLL 265

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG+   AQ+ G N ++  +A+     F +
Sbjct: 266 -DGKGGGKDLSAQATGKNTHRLQEALQAARQFAR 298


>gi|323475009|gb|ADX85615.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus REY15A]
 gi|323477739|gb|ADX82977.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus HVE10/4]
          Length = 236

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 7/229 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     V  +   V+ D+T FY   GG   DTG  I +          K+ E   + H 
Sbjct: 13  KEFEGRVVKIEDSYVMLDKTAFYPGGGGLENDTGFLINERGEKINVTEAKRGENGEILHK 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           I +   L     ++  I+++ R ++   H+A+H++               G  I+P+  +
Sbjct: 73  IDQNASLNVGDKVIGKINWERRYRMMRLHTASHIVAALA--YSKFGALITGGHISPEQAK 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D       T  E   + +  N+I+ + + +    + RE+A+   A   L  +   ++ +
Sbjct: 131 DDFNVENKDTLIE---LINEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIPI 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             +    G        GG HV++T EI  + ++   +   G +R+    
Sbjct: 188 WRIVEIPG--IDIQADGGPHVNNTKEIGEIVLLKVENKGKGRKRVYYTV 234


>gi|56067713|gb|AAV70324.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067715|gb|AAV70325.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 146

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 1/146 (0%)

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
             +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +      
Sbjct: 1   QYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDES 60

Query: 542 QITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
              +V      G +V H  V  G LR    +   +D   R+    NHSATH L+H+L  +
Sbjct: 61  SEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMDVVRRQLTMKNHSATHALNHSLLKV 120

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKP 626
           LG    Q GS + P+ LRFD T+   
Sbjct: 121 LGQDTDQRGSLVVPEKLRFDFTNKSA 146


>gi|146081949|ref|XP_001464407.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068499|emb|CAM66793.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 491

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 127/422 (30%), Gaps = 70/422 (16%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-----------VQKKAEGIFVHHA 558
             +V+   +  + E GGQ  D G            D                  +     
Sbjct: 51  TYDVILSDSVLFPEGGGQPCDHGTLRVVSGDNDKADPSCGATAAPPLSITNVRRVGDTCV 110

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     L    ++   +D+  R     +H+  HLL   +       +      +T     
Sbjct: 111 LTSPAALPVGATVHQMVDWPRRMDHMQHHTGQHLLTAVVEREDTLRLPTVSWSLTHPYCF 170

Query: 619 FD-----------------VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
                              +T  K I+   +  IE   ND IAQ+  V   +    +   
Sbjct: 171 IQVDVGGYASDPASPYHAYITKEKKISDEMVAKIEVLCNDAIAQSTAVQCDVFENREVYM 230

Query: 662 S--------------GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
                          G      ++         +         S  C GTH+ +  E+  
Sbjct: 231 REQDRRHQTAAASADGGTEAFRSRGIPEDVTGPIRIISLDAIDSCTCCGTHLRTLAELQA 290

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL-KVSQGNVVGRVEEIWEE 766
           +Y++ +      ++ +  ITG+RA         + + L   L      + V  V+   ++
Sbjct: 291 MYLLHQEVKGTLVK-LYFITGKRAARQFHAMYHRERQLMPELGGSRPNDFVSVVQRRSKD 349

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII------SEVDSKELKSVMDALQKKI 820
              L+ +  +  L+L   +      A     +  +       +VD        + ++ ++
Sbjct: 350 ATDLEKLMKRWTLELASVEAQRIAAAVPASHAATVTVPLRRDDVDL----EFFNEVRARL 405

Query: 821 QSG----IIMLVGISKEKKASVLIVVTEDLLDRF------------NAVDLARLSAKVLG 864
            +     ++++   + E+  +  +   +D+  +              AV L + + + + 
Sbjct: 406 DAAGLRRVVLVSAWAAERCTAGTLASAKDVAGQVFVTGGETPADMEKAVQLVKETLEGVK 465

Query: 865 GG 866
           GG
Sbjct: 466 GG 467


>gi|229581785|ref|YP_002840184.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           Y.N.15.51]
 gi|228012501|gb|ACP48262.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           Y.N.15.51]
          Length = 236

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 7/229 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     V  +   V+ D+T FY   GG   DTG  I +          K+ E   + H 
Sbjct: 13  KEFEGRVVKIEDSYVMLDKTSFYPGGGGLENDTGFLINERGEKINVIEAKRGENGEILHK 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           I +   L     ++  I+++ R ++   H+A+H++               G  I+P+  +
Sbjct: 73  IDQNASLNVGDKVIGKINWERRYRMMRLHTASHIVAALA--YSKFGALITGGHISPEQAK 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D       T  E   + +  N+I+ + + +    + RE+A+   A   L  +   ++ +
Sbjct: 131 DDFNVENKDTLIE---LINEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIPI 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             +    G        GG HV++T EI  + ++   +   G +R+    
Sbjct: 188 WRIVEIPG--IDIQADGGPHVNNTKEIGEIVLLKVENKGKGRKRVYYTV 234


>gi|227827921|ref|YP_002829701.1| threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.14.25]
 gi|229585188|ref|YP_002843690.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.16.27]
 gi|227459717|gb|ACP38403.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.14.25]
 gi|228020238|gb|ACP55645.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.16.27]
          Length = 236

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 7/229 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     V  +   V+ D+T FY   GG   D G  I +          K+ E   + H 
Sbjct: 13  KEFEGRVVKIEDSYVMLDKTAFYPGGGGLENDIGFLINERGEKINVTEAKRGENGEILHK 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           I +   L     ++  I+++ R ++   H+A+H++               G  I+P+  +
Sbjct: 73  IDQNASLNVGDKVIGKINWERRYRMMRLHTASHIVAALA--YSKFGALITGGHISPEQAK 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D       T  E   + +  N+I+ + + +    + RE+A+   A   L  +   ++ +
Sbjct: 131 DDFNVENKDTLIE---LINEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIPI 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             +    G        GG HV++T EI  + ++   +   G +R+    
Sbjct: 188 WRIVEIPG--IDIQADGGPHVNNTKEIGEIVLLKVENKGKGRKRVYYTV 234


>gi|170060840|ref|XP_001865979.1| alanyl-tRNA synthetase domain-containing protein 1 [Culex
           quinquefasciatus]
 gi|167879216|gb|EDS42599.1| alanyl-tRNA synthetase domain-containing protein 1 [Culex
           quinquefasciatus]
          Length = 310

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 103/338 (30%), Gaps = 53/338 (15%)

Query: 577 YQNRRQLSINHSATHLLHHAL-STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
            + R      HS  HL+          S+V  +   +               T  +L  +
Sbjct: 1   MERRFDHMQQHSGQHLITAIFDREFEDSYVDLDAKDV---------------TREQLDKV 45

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYNDRVRVVSVEYEDGGVHSS 691
           E   N +I     V   +   +D             L    +  +RVV+++  +      
Sbjct: 46  ERICNQLIVDCTAVSVAVYQPDDPALKSDVTRATRGLPEDVSGPLRVVTIDGIESN---- 101

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            +C GTHV +  ++  +  ++          +  + G R    L    ++       L  
Sbjct: 102 -MCCGTHVRNLAQLQAIKFLNVE-KGKAKCLVHFLVGGRVLRKLTECYDREVQFNGLLNG 159

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVD 805
              + V  + ++    R +Q   + RK+   +  L   KI          +  H     D
Sbjct: 160 GAPSHVDLLRKLQTTVRSVQK--SSRKMSSELAQLEADKINQAPDPKPKFYTVHRTDGPD 217

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKE-KKA---SVLIVVTEDLLDRFNAVDLARLSAK 861
           S  +   +  ++  +    + +   + +  K      L    ED+        L      
Sbjct: 218 SDYINVFLRCVK--LPECFLFVTNAADDTGKGAGQMALQGRPEDIAA------LGDPICA 269

Query: 862 VLGGGGGGGRPHM-AQSGGPNGNKADQAIAGVASFLKK 898
           +L G G G  P   A       NK  + I      +++
Sbjct: 270 LLEGKGNGKGPRYNA-----KVNKLKE-IDQCRKLIEE 301


>gi|229172419|ref|ZP_04299978.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus MM3]
 gi|228610890|gb|EEK68153.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus MM3]
          Length = 236

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  ++   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKIFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + L ++++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  ALVKLGPVKLEVNWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVKKVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|227830643|ref|YP_002832423.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           L.S.2.15]
 gi|229579527|ref|YP_002837925.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           Y.G.57.14]
 gi|227457091|gb|ACP35778.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           L.S.2.15]
 gi|228010241|gb|ACP46003.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           Y.G.57.14]
          Length = 236

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 7/229 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     V  +   V+ D+T FY   GG   DTG  I +          K+ E   + H 
Sbjct: 13  KEFEGRVVKIEDSYVMLDKTAFYPGGGGLENDTGFLINERGEKINVIEAKRGENGEILHK 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           I +   L     ++  I+++ R ++   H+A+H++               G  I+P+  +
Sbjct: 73  IDQNASLNVGDKVIGKINWERRYRMMRLHTASHIVAALA--YSKFGALITGGHISPEQAK 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D       T  E   + +  N+I+ + + +    + RE+A+   A   L  +   ++ +
Sbjct: 131 DDFNVENKDTLIE---LINEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIPI 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             +    G        GG HV++T EI  + ++   +   G +R+    
Sbjct: 188 WRIVEIPG--IDIQADGGPHVNNTKEIGEIVLLKVENKGKGRKRVYYTV 234


>gi|52143685|ref|YP_083143.1| alanine--tRNA ligase [Bacillus cereus E33L]
 gi|51977154|gb|AAU18704.1| possible alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           cereus E33L]
          Length = 236

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGFIVQDGSVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|257463065|ref|ZP_05627467.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 248

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 8/203 (3%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L  +      ID + +++++  H+A H+             +  G  +  D    
Sbjct: 53  WLDSPLEEKKEYDYVIDSERQQEIAQQHTAQHIFSSLAHRYFSW--NTVGFRMAEDYSTV 110

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+ H   I   +++ +E  VN+ I Q+L +    ++ E A        + +K    VR V
Sbjct: 111 DLDHLD-IPFEQIRFLEQEVNNTIEQSLSLRIFSLSSEKAHQLSLRKAISSKIQGEVRFV 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            V   D        CGG HV +T EI    I+   +IR    R   + G+RA      + 
Sbjct: 170 EVPGVD-----LCACGGFHVKNTLEIRAFKIIHRENIRGKFTRFYFLAGKRALQDYFQKH 224

Query: 740 EKLKSLASFLKVSQGNVVGRVEE 762
           +  KSL+         ++   E+
Sbjct: 225 QITKSLSHRYSCQISEILEMQEK 247


>gi|254488453|ref|ZP_05101658.1| alanyl-transfer RNA synthetase domain protein [Roseobacter sp.
           GAI101]
 gi|214045322|gb|EEB85960.1| alanyl-transfer RNA synthetase domain protein [Roseobacter sp.
           GAI101]
          Length = 239

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 84/220 (38%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           ++  +V D T FY   GGQ GD+G  I DG R+ I    K      V        +    
Sbjct: 24  EEGGIVLDSTIFYPTGGGQPGDSGWLIWDGQRMPIATTVKGQGDAIVLVPAEPLPLPGIG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +  T+D+  R +    H+  HLL       +       G  I+    R D    +   
Sbjct: 84  THVTQTLDWDRRHRHMRVHTMLHLLS------VVVPFGVTGGQISARQGRLDFDMPEAPD 137

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYE 684
             E       +N+ +  +L V  R + + +  A+       A+   K  +RVR+V +  +
Sbjct: 138 DREGIETA--LNNFVMADLRVSDRWITQAELDAAPELVKTMAVKPPKSAERVRLVQIGDQ 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                    CGGTH++ TGEI  L +          RRI 
Sbjct: 196 S-SWIDLQPCGGTHIARTGEIGALRLGKIEKKGRNNRRIY 234


>gi|317060667|ref|ZP_07925152.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313686343|gb|EFS23178.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 249

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 8/203 (3%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L  +      ID + +++++  H+A H+             +  G  +  D    
Sbjct: 54  WLDSPLEEKKEYDYVIDSERQQEIAQQHTAQHIFSSLAHRYFSW--NTVGFRMAEDYSTV 111

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+ H   I   +++ +E  VN+ I Q+L +    ++ E A        + +K    VR V
Sbjct: 112 DLDHLD-IPFEQIRFLEQEVNNTIEQSLSLRIFSLSSEKAHQLSLRKAISSKIQGEVRFV 170

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            V   D        CGG HV +T EI    I+   +IR    R   + G+RA      + 
Sbjct: 171 EVPGVD-----LCACGGFHVKNTLEIRAFKIIHRENIRGKFTRFYFLAGKRALQDYFQKH 225

Query: 740 EKLKSLASFLKVSQGNVVGRVEE 762
           +  KSL+         ++   E+
Sbjct: 226 QITKSLSHRYSCQISEILEMQEK 248


>gi|322497813|emb|CBZ32889.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 491

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/422 (13%), Positives = 127/422 (30%), Gaps = 70/422 (16%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-----------VQKKAEGIFVHHA 558
             +V+   +  + E GGQ  D G            D                  +     
Sbjct: 51  TYDVILSDSVLFPEGGGQPCDHGTLRVVSGDNDKADPSCGATAAPPLSITNVRRVGDTCV 110

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     L    ++   +D+  R     +H+  HLL   +       +      +T     
Sbjct: 111 LTSPAALPVGATVHQMVDWPRRMDHMQHHTGQHLLTAVVEREDTLRLPTVSWSLTHPYCF 170

Query: 619 FD-----------------VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
                              +T  K I+   +  IE   ND IAQ+  V   +    +   
Sbjct: 171 IQVDVGGYASDPASPYHAYITKEKKISDEMVAKIEVLCNDAIAQSTAVQCDVFENREVYM 230

Query: 662 S--------------GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
                          G      ++         +         S  C GTH+ +  E+  
Sbjct: 231 REQDRRHQTAAASADGGTEAFRSRGIPEDVTGPIRIISLDAIDSCTCCGTHLRTLAELQA 290

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL-KVSQGNVVGRVEEIWEE 766
           +Y++ +      ++ +  ITG+RA         + + L   L      + V  V+   ++
Sbjct: 291 MYLLHQEVKGTLVK-LYFITGKRAARQFHAMYHRERQLMPELGGSRPNDFVSVVQRRSKD 349

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII------SEVDSKELKSVMDALQKKI 820
              L+ +  +  L+L   +      A     +  +       +VD        + ++ ++
Sbjct: 350 ATDLEKLMKRWTLELASVEAQRIAAAVPASHAATVTVPLRRDDVDL----EFFNEVRARL 405

Query: 821 QSG----IIMLVGISKEKKASVLIVVTEDLLDRF------------NAVDLARLSAKVLG 864
            +     ++++   + E+  +  +   +D+  +              AV L + + + + 
Sbjct: 406 DAAGLRRVVLVSAWAAERCTAGTLASAKDVAGQVFVTGGETPADMEKAVQLVKETLEGMK 465

Query: 865 GG 866
           GG
Sbjct: 466 GG 467


>gi|48477442|ref|YP_023148.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|48430090|gb|AAT42955.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 249

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 4/214 (1%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ D+T FY   GGQ  DTG  + D  + Q+ DV K  + I    +    G       L
Sbjct: 37  EVILDRTCFYPTGGGQPNDTGLLLKDDKKYQVIDVYKNNDDIIHKISGDVPGR---GDKL 93

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+  R  L   H+A H++   +      H    G  +  D  R D      I    
Sbjct: 94  HGIIDWDRRYSLMRYHTAVHIIDGVVKNYYNDHGMLTGGQLYTDHARVDF-DFDDINREL 152

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +++I +  N+II + L V  + + R++A+A    A           +  V   +      
Sbjct: 153 IETIINQSNEIIEKGLNVFEKTLTRDEALAIPDLARTEPGRRLIESLDYVRVIEIEGFDM 212

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
              GGTHV +T E+  + I    +   G +R+E 
Sbjct: 213 QSDGGTHVKNTSEVGKIIIKKIENKGRGHKRLEF 246


>gi|322489825|emb|CBZ25086.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 491

 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/421 (12%), Positives = 126/421 (29%), Gaps = 70/421 (16%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD-----------VQKKAEGIFVHHAI 559
            +V+   +  + E GGQ  D G            D                  +     +
Sbjct: 52  YDVILSDSVLFPEGGGQPCDYGTLRVVSGDDNKADPSCEATAAPPLSITNVRRVGDTCVL 111

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L    ++   +D+  R     +H+  HLL   +       +      +T      
Sbjct: 112 TSPAPLPVGATVHQMVDWPRRMDHMQHHTGQHLLTAVVERKDTLSLPTVSWSLTHPYCFI 171

Query: 620 DVTH----------------------SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            V                         + +T  E    +   +    +      R     
Sbjct: 172 QVDVGSYASDPASPYHAYITKEKKIADEMVTKIEALCNDAISHSTAVECDVFENRETYMR 231

Query: 658 DAIASGAAALLGTKYNDR-VRVVSVEYEDGGVH--------SSALCGGTHVSSTGEIMLL 708
           +      AA       +   R   +  +  G           S  C GTH+ +  E+  +
Sbjct: 232 EQDRRHQAAAASADGGEEAFRSRGIPEDVTGPIRIISLDAIDSCTCCGTHLHTLAELQAM 291

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL-KVSQGNVVGRVEEIWEEY 767
           Y++ +      ++ +  ITG+RA        ++ + L   L      + V  V+   ++ 
Sbjct: 292 YLLHQEVKGTLVK-LYFITGERAAQQFHAMYQRERHLMPELGGSRPNDFVSVVQRRSKDA 350

Query: 768 RKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHII----SEVDSKELKSVMDALQKKIQ 821
             L+ +  +  L+L   +       +   +  +  +     +VD        + ++ ++ 
Sbjct: 351 TDLEKLMKRWTLELASVEAQRIAATVPSSHAAAVTVPLRRDDVDL----EFFNEVRARLD 406

Query: 822 S----GIIMLVGISKEKKASVLIVVTEDLLDRF------------NAVDLARLSAKVLGG 865
           +     ++++   + E+  +  +  T+D+  +              AV L + + + + G
Sbjct: 407 AVGLRRVVLVSAWAAERCTAGTLASTKDVAGQVFVSGGETPVDMEKAVQLVKETLEGMKG 466

Query: 866 G 866
           G
Sbjct: 467 G 467


>gi|324325791|gb|ADY21051.1| alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 236

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVKEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|153214946|ref|ZP_01949729.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124115019|gb|EAY33839.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 57

 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 8/48 (16%)

Query: 142 KISGLSADKIIRITTN--------DNFWSMAETGPCGPCSEIFFDQGE 181
           K  G+ AD+IIRI           DNFW M +TGPCGPC+EIF+D G+
Sbjct: 10  KKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTEIFYDHGD 57


>gi|169840210|ref|ZP_02873398.1| alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 72

 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +++E K ++   V         A +  + +A++L GG GGG+   A +GG N    + A+
Sbjct: 3   VNEEGKIALAAGVKNTP---LKAGEWVKFTAQIL-GGNGGGKDDFATAGGKNVLAIEDAV 58

Query: 890 AGVASFLK 897
                F K
Sbjct: 59  RQALEFAK 66


>gi|218902887|ref|YP_002450721.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH820]
 gi|228914351|ref|ZP_04077966.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228933057|ref|ZP_04095920.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229121325|ref|ZP_04250556.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus 95/8201]
 gi|218539979|gb|ACK92377.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH820]
 gi|228662170|gb|EEL17779.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus 95/8201]
 gi|228826658|gb|EEM72429.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228845345|gb|EEM90381.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 236

 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----YNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPATIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|228926809|ref|ZP_04089877.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832922|gb|EEM78491.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 236

 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----YNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPATIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T E+  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEVGTLVIDKVKSKGKQNRRFE 232


>gi|118477205|ref|YP_894356.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Bacillus thuringiensis str. Al Hakam]
 gi|225863631|ref|YP_002749009.1| alanyl-tRNA synthetase domain protein [Bacillus cereus 03BB102]
 gi|229183965|ref|ZP_04311180.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BGSC 6E1]
 gi|118416430|gb|ABK84849.1| Ala-tRNA(Pro) hydrolase [Bacillus thuringiensis str. Al Hakam]
 gi|225787536|gb|ACO27753.1| alanyl-tRNA synthetase domain protein [Bacillus cereus 03BB102]
 gi|228599490|gb|EEK57095.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BGSC 6E1]
          Length = 236

 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGKIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  ALVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|322371755|ref|ZP_08046298.1| Alanyl-tRNA synthetase, class IIc-like protein [Haladaptatus
           paucihalophilus DX253]
 gi|320548640|gb|EFW90311.1| Alanyl-tRNA synthetase, class IIc-like protein [Haladaptatus
           paucihalophilus DX253]
          Length = 240

 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 86/245 (35%), Gaps = 8/245 (3%)

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
              T    ++      + E            VV D+T FY E GGQ  DTG    +    
Sbjct: 2   FYSTCMTEALYLDATSEREFEATVERVTSNRVVLDRTLFYPEGGGQPFDTGVLESEDETW 61

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +TDVQKK              +     ++   ID++ R      H+A HLL   L  + 
Sbjct: 62  AVTDVQKKDTIYHTLDGT----LPEEGTTVTGRIDWERRYAHMRYHTAQHLLSAVL--LE 115

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
                  G+ +  D  R D    +  T  E   IE  +ND I   L V    M+R++A A
Sbjct: 116 EYDAQTTGNQLYEDRARIDC-GYERFTDEEFARIESVMNDRIDAGLAVNWYEMDRDEAEA 174

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           S               +  +   +        C GTHV  T E+    I    +  +   
Sbjct: 175 SLDPERTRIHLLPE-SIRRIRIVEIEGTDRTACAGTHVERTDELGAFRITGRETKGSDEE 233

Query: 722 RIEAI 726
           R++ +
Sbjct: 234 RLKFV 238


>gi|49480535|ref|YP_035892.1| alanine--tRNA ligase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332091|gb|AAT62737.1| possible alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 236

 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + L ++++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  ALVKLGPVKLEVNWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----YNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPATIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|195587928|ref|XP_002083713.1| GD13880 [Drosophila simulans]
 gi|194195722|gb|EDX09298.1| GD13880 [Drosophila simulans]
          Length = 466

 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 157/408 (38%), Gaps = 58/408 (14%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI-----FVHHAIVERG 563
             + +V   + FY E+GGQ  D G  +    +        +   +      V H      
Sbjct: 22  DLISIVTAASNFYYESGGQQSDGGKILVSNHQHPEHPHSLEVISVKHLNDCVVHVCKLSS 81

Query: 564 ILR-----TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                       + L +D Q R+  + +H+ATHLL+ A+ ++      Q  S +T D  +
Sbjct: 82  PTDTFQLAIGDEVELLVDAQQRQLNTCHHTATHLLNAAIRSLFKKVTYQVSSSVTSDQCK 141

Query: 619 FDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDR- 675
            ++    K I  ++++ IED +N +I    PV  ++++  + +      ++    Y ++ 
Sbjct: 142 LELGLLGKRIQKSDVQLIEDLINRVICSAAPVEVQLLSAAEVLEQNDITMVPGEVYPEQG 201

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +R+V+VE  +  + S  LC GTH ++T E+    IV+            A+ GQ A + L
Sbjct: 202 LRLVNVESPELQLSSKELCCGTHATNTSELSCFCIVNLKQTNRARFAFTAVAGQAAENVL 261

Query: 736 -----------------------MGQDEKLKSLA-SFLKVSQG-------NVVGRVEEIW 764
                                     + +L+++  + L            + + R+ E+ 
Sbjct: 262 KTAALLRHRVDLLEKQFQTDKLTNATEAELQTIRHNMLHTDIKLPYAFKMDTLERITEML 321

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDAL-----QK 818
           +  +       K  + + +  L   K  D + F+ H I+        ++++ +      K
Sbjct: 322 KRIKDSSRTTLKEFVDVEMRTLLQEKPLDTHPFILHYITSS------ALVEEIPLQRATK 375

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGG 865
             Q   I+++ +  +        V  + + ++FNA    +  A    G
Sbjct: 376 VCQDRPILVISV-CDSVVKARCCVPANCITEKFNASAWLQSFADTFNG 422


>gi|152974311|ref|YP_001373828.1| threonyl/alanyl tRNA synthetase SAD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023063|gb|ABS20833.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cytotoxicus NVH
           391-98]
          Length = 238

 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             + +  +++ D+T FY   GGQ  D G    + I   +  V++    I       E+  
Sbjct: 19  IKNIENEKIILDKTIFYPTGGGQPCDIGYLKQNKIIFPVNKVERVDNEIIHFIDNSEKLQ 78

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 + L +D+  R +    HS  H+    L           G+ I  +  R D+  +
Sbjct: 79  YGP---VELVLDWNRRYKFMRYHSLLHVFAGYL--YNEYDALTLGNQIFENRARIDIQFN 133

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
             ++  E ++IE  +N+II  N  + +RI+NR +                   + ++   
Sbjct: 134 AQLSDTEFQNIEKRINEIIQDNHQIKSRIINRCEGTNLDGKIKTVLSLIP-NNINNIRLI 192

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           +        C GTHVS T EI    I+S  S   G RR E I
Sbjct: 193 EIENLDEQPCNGTHVSETKEIGSFQIISNKSKGKGKRRFELI 234


>gi|296242902|ref|YP_003650389.1| Ala-tRNA(Pro) hydrolase [Thermosphaera aggregans DSM 11486]
 gi|296095486|gb|ADG91437.1| Ala-tRNA(Pro) hydrolase [Thermosphaera aggregans DSM 11486]
          Length = 238

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 87/215 (40%), Gaps = 5/215 (2%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D+T F+ ++GG   DTG  + +G+ + +  V    E   + H + +       + ++
Sbjct: 27  LVLDKTIFHPKSGGVDNDTGWIVYNGLEIPVNSVYYDKESGLLIHELEKPLEASEGVKVL 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +++  R +L   H+A HLL   +     + ++  G  I+ +    D +  +       
Sbjct: 87  LRLNWNRRYRLMRLHTAAHLLSAIMYRDYNALIT--GGNISEEYAYDDYS-METFDREAF 143

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
               +  N I+ Q L V    + R++A+       L  +    V  + +    G      
Sbjct: 144 LKAVEKANQIVRQALEVKIYWLPRDEALKIPGVVKLAARMPPSVDKLRIVEIPG--IDVQ 201

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             GG HV +T EI  + ++   +     +RI    
Sbjct: 202 ADGGPHVRNTLEIGEIVLLKIENKGKNKKRIYFTV 236


>gi|288958139|ref|YP_003448480.1| threonyl/alanyl tRNA synthetase SAD [Azospirillum sp. B510]
 gi|288910447|dbj|BAI71936.1| threonyl/alanyl tRNA synthetase SAD [Azospirillum sp. B510]
          Length = 235

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 93/228 (40%), Gaps = 19/228 (8%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ--KKAEGIFVHHAI 559
           V    +  +  +  D+T FY   GGQ GD+G    DG  ++I D           +H   
Sbjct: 15  VATVTTVDERGIRLDRTVFYPTGGGQPGDSGALRFDGFTVRIKDTVKGDAGPDDVIHVPE 74

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
             + +     ++   ID++ R +    H+A HLL   +        S  G  I  D  R 
Sbjct: 75  EGQELPDPGTAVEAEIDWERRYRHMRMHTALHLLCAVV------PGSVTGGQIGADKSRL 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND----R 675
           D        S +   + + VN +IA + PV TR ++ E+  A        +        R
Sbjct: 129 DFNVPAE--SLDKDVLAEAVNRLIAADTPVGTRWISDEEMAAQPELVRTMSVKPPAGGGR 186

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           VR+++VE  D        CGGTHV+ TGEI  + +    +     RR+
Sbjct: 187 VRLLNVEGVD-----LQPCGGTHVARTGEIGGIEVTKIENKGKQNRRV 229


>gi|42780865|ref|NP_978112.1| alanyl-tRNA synthetase domain-containing protein [Bacillus cereus
           ATCC 10987]
 gi|42736786|gb|AAS40720.1| alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 10987]
          Length = 236

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVYVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVNLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVKEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTNEIGTLVIDKVKSKGKQNRRFE 232


>gi|228938887|ref|ZP_04101487.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971768|ref|ZP_04132389.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978377|ref|ZP_04138754.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           Bt407]
 gi|228781394|gb|EEM29595.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           Bt407]
 gi|228787858|gb|EEM35816.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820736|gb|EEM66761.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939387|gb|AEA15283.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 236

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+++   I  +     + 
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKREQGEIVHYIKDEAQ- 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L ++++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 77  --VKLGPVKLEMNWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I + VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVEEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIREIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|229144386|ref|ZP_04272791.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-ST24]
 gi|228639017|gb|EEK95442.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-ST24]
          Length = 236

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +     + 
Sbjct: 18  EVIKVEGNKVFVKETVFYPAGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYIKDEAQ- 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L ++++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 77  --VKLGPVKLEMNWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I + VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSMEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|218231311|ref|YP_002366458.1| alanyl-tRNA synthetase domain protein [Bacillus cereus B4264]
 gi|218159268|gb|ACK59260.1| alanyl-tRNA synthetase domain protein [Bacillus cereus B4264]
          Length = 236

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +     + 
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYIKDEAQ- 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L ++++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 77  --VKLGPVKLEMNWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I + VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|296502374|ref|YP_003664074.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis BMB171]
 gi|296323426|gb|ADH06354.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis BMB171]
          Length = 236

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +     + 
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYIKDEAQ- 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 77  --VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I + VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|254467074|ref|ZP_05080485.1| alanyl-transfer RNA synthetase domain protein [Rhodobacterales
           bacterium Y4I]
 gi|206687982|gb|EDZ48464.1| alanyl-transfer RNA synthetase domain protein [Rhodobacterales
           bacterium Y4I]
          Length = 241

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 78/227 (34%), Gaps = 9/227 (3%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
              E      +  ++ D+T FYA  GGQ GD+G  +    +  I    K  +G  V    
Sbjct: 17  AEAEVLAQTDQGGIILDRTLFYATGGGQPGDSGKLLWAEGQCIIATTAKGEDGAVVLVPA 76

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
               +     ++   +D+  R      H+A HLL       +   +   G  I     R 
Sbjct: 77  EGSALPPVGATVTQVLDWDRRYGHMRVHTALHLLS------VVIPLEVTGGSIGDGKGRL 130

Query: 620 DVTHSKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           D    +     +     ++  ++  +      +T      +       ++   +   +VR
Sbjct: 131 DFNMPEAPEDKQALQDRLQALIDRDLEVTDDWITDAELDANPQLVKTMSVAPPRGAGQVR 190

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +V +   +        CGGTHV  TGEI  + +          RR+ 
Sbjct: 191 LVRI-GTEEEQIDLQPCGGTHVRRTGEIGKIRLGKVEKKGKQNRRVY 236


>gi|301053311|ref|YP_003791522.1| putative alanine-tRNA ligase [Bacillus anthracis CI]
 gi|300375480|gb|ADK04384.1| possible alanine-tRNA ligase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 236

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +    + G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYI---KDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I   VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVKEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPITIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S      R E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNCRFE 232


>gi|30019816|ref|NP_831447.1| metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus cereus ATCC 14579]
 gi|228958054|ref|ZP_04119789.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229043529|ref|ZP_04191238.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus AH676]
 gi|229127100|ref|ZP_04256097.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-Cer4]
 gi|29895361|gb|AAP08648.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus cereus ATCC 14579]
 gi|228656216|gb|EEL12057.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-Cer4]
 gi|228725751|gb|EEL76999.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus AH676]
 gi|228801571|gb|EEM48453.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 236

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +     + 
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYIKDEAQ- 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 77  --VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I + VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|218660550|ref|ZP_03516480.1| class II aminoacyl t-RNA synthetase domain-containing protein
           [Rhizobium etli IE4771]
          Length = 220

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 90/304 (29%), Gaps = 91/304 (29%)

Query: 76  DLDNVGRTNRHHTFFEMLGNFSF-----GGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           DLD +G    H   F MLG FSF     G      AI   W        L     ++T++
Sbjct: 3   DLDEIG-DGTHFLHFTMLGLFSFREMTVGD-----AIDF-WLAFLGTLGLAPD--HVTMH 53

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190
            +         + + L   ++  +   +  WS       G C+E F+  G          
Sbjct: 54  PDRL------IEWTPLYGGRVPIVADAECIWSDGSI--SGYCTE-FYKHG---------- 94

Query: 191 SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFK 250
                  IEI N+V                   ID G G ER+  ++        ++  +
Sbjct: 95  -------IEIGNIV------NPLGS-------CIDVGFGAERLDMIVNGTPPADALETLR 134

Query: 251 HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
             +                                +  G  P N+ +GYVLR+++RR   
Sbjct: 135 ETVMTI-----------------------------VESGYRPGNKEQGYVLRKLLRRIHR 165

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
               L +              E+        +   L +       E +  T    L  ++
Sbjct: 166 MGGTLDHP---------FFGEEVERQKRLGAKYLRLRDRYCDKGAEWWFDTHGIDLSDIE 216

Query: 371 GVLS 374
            ++ 
Sbjct: 217 EIIE 220


>gi|149202516|ref|ZP_01879488.1| hypothetical protein RTM1035_07864 [Roseovarius sp. TM1035]
 gi|149143798|gb|EDM31832.1| hypothetical protein RTM1035_07864 [Roseovarius sp. TM1035]
          Length = 239

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 86/219 (39%), Gaps = 13/219 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V DQT FY   GGQ GD+G  +  G  L I    K               +     
Sbjct: 25  EGGIVLDQTLFYPMGGGQPGDSGRLMCQGRSLPIATAVKAEGEQIALVMAEPMALPPIGT 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +L   ID+  R +L   H+A HLL       +   +  +G  +     R D    +    
Sbjct: 85  ALRQAIDWPRRHRLMRMHTALHLLS------VVIPLPVSGGAVAETRSRLDFDMPEAPED 138

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYED 685
            E   +ED +N ++ Q+LPV    +  +   A+       ++     + RVR+V +    
Sbjct: 139 RET--LEDYLNQLVDQDLPVTEEWITDDALRANPGLVKTMSVAPPMGSGRVRLVRIGQGT 196

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             V     CGGTHV+ TGEI  L +          RR+ 
Sbjct: 197 DQV-DLQPCGGTHVARTGEIGRLRLGKIEKKGRHNRRVY 234


>gi|206970665|ref|ZP_03231617.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH1134]
 gi|206734301|gb|EDZ51471.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH1134]
          Length = 236

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +     + 
Sbjct: 18  EVIRVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYIKDEAQ- 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 77  --VKLGPVKLEINWERRHNLMCHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I + VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|257051705|ref|YP_003129538.1| Threonyl/alanyl tRNA synthetase SAD [Halorhabdus utahensis DSM
           12940]
 gi|256690468|gb|ACV10805.1| Threonyl/alanyl tRNA synthetase SAD [Halorhabdus utahensis DSM
           12940]
          Length = 265

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 92/228 (40%), Gaps = 8/228 (3%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +     V   +  +V D T FY E GGQ  D G    DG    + DV+K    +      
Sbjct: 39  DFEATVVEATEESIVLDGTYFYPEGGGQPADRGTIEWDGGAAAVVDVRKDHGEVHHEIDD 98

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           VE  +     + +  ID   R      H+A H+L   +  +     +  G+ I  D  R 
Sbjct: 99  VEGDLPAEGETAIGQIDENRREAHRRMHTAQHILSRVV--LGAFDATTAGNQIHADCSRI 156

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE--DAIASGAAALLGTKYNDRVR 677
           D         A+L+ IE+  N++I ++L V      RE  +   +   + L    +    
Sbjct: 157 DF-EPADFDDADLELIEERTNEVIERDLRVNKDERPRETVEETVAEGRSNLSLLPDHVEE 215

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +  VE +D        CGGTHV  TGEI  + I +  S  A + RIE 
Sbjct: 216 LRVVEIDD---FDMCPCGGTHVDRTGEIGPIEITNRLSKGAEVERIEF 260


>gi|228952156|ref|ZP_04114248.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807510|gb|EEM54037.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 236

 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +     + 
Sbjct: 18  EVIRVEGNKVFVKETIFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYIKDEAQ- 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 77  --VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I + VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|229189871|ref|ZP_04316881.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 10876]
 gi|228593545|gb|EEK51354.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 10876]
          Length = 236

 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +     + 
Sbjct: 18  EVIRVEGNKVFVKETIFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYIKDEAQ- 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 77  --VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I + VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|330508520|ref|YP_004384948.1| alanyl-tRNA synthetase domain-containing protein [Methanosaeta
           concilii GP-6]
 gi|328929328|gb|AEB69130.1| alanyl-tRNA synthetase domain protein [Methanosaeta concilii GP-6]
          Length = 233

 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 15/215 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY ++GGQ  D G    D     +  V+       +    +  G       + 
Sbjct: 28  VILEETAFYPQSGGQPSDLGSLFRDEDEFCVLRVEPSGPIHIMDRTGLAPG-----DRVS 82

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+  R +   +H+A H+L   +    G+ ++  G+ I     R D +  +    +++
Sbjct: 83  GRIDWDRRYRFMRSHTACHILSSVIFDKTGARIT--GNQIDIARSRVDFSL-EAFDKSKI 139

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND--RVRVVSVEYEDGGVHS 690
               D  N +I+++  V   ++ R +A+A      L     D   +RVV +E  D     
Sbjct: 140 AEYVDQANQLISEDHAVRISLLPRAEAMAIPDLVRLAMDVPDREEIRVVEIEGVD----- 194

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
              CGGTHV  TGEI  + +V   +     RR+  
Sbjct: 195 RQACGGTHVGRTGEIKGIKLVKAENKGKANRRVYF 229


>gi|228920483|ref|ZP_04083828.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229069324|ref|ZP_04202614.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus F65185]
 gi|229078955|ref|ZP_04211507.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock4-2]
 gi|229109229|ref|ZP_04238828.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock1-15]
 gi|229178181|ref|ZP_04305552.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus 172560W]
 gi|228605311|gb|EEK62761.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus 172560W]
 gi|228674239|gb|EEL29484.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock1-15]
 gi|228704369|gb|EEL56803.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock4-2]
 gi|228713811|gb|EEL65696.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus F65185]
 gi|228839113|gb|EEM84409.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 236

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +     + 
Sbjct: 18  EVIRVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYIKDEAQ- 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 77  --VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I + VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|254474545|ref|ZP_05087931.1| alanyl-transfer RNA synthetase domain protein [Ruegeria sp. R11]
 gi|214028788|gb|EEB69623.1| alanyl-transfer RNA synthetase domain protein [Ruegeria sp. R11]
          Length = 239

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           ++  +V +Q+ FY   GGQ GDTG    DG  L I +  K   G  V     +  +    
Sbjct: 24  EEGGLVLNQSVFYPTGGGQPGDTGALSWDGGHLSIINTVKGEAGEIVLIPEPDAALPPVG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++  ++D+  R      H+A HLL   L       +  +G  I  +  R D    +   
Sbjct: 84  AAVSQSLDWDRRMGHMRIHTALHLLSVVL------PLPVSGGAIGAEKGRLDFNMPEA-- 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR----VRVVSVEYE 684
             + +++ED +N +IA++L V  R +   +  A        +    R    +R+V +  +
Sbjct: 136 PEDKQALEDALNALIARDLEVTERWITDAELDAQPDLVKTMSVSPPRGSGRIRLVRIGTQ 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                    CGGTHV+ TGEI  + +          RR+ 
Sbjct: 196 SDQ-IDLQPCGGTHVNRTGEIGAIRLGKVEKKGKQNRRVY 234


>gi|218896708|ref|YP_002445119.1| alanyl-tRNA synthetase domain protein [Bacillus cereus G9842]
 gi|228964758|ref|ZP_04125865.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218544569|gb|ACK96963.1| alanyl-tRNA synthetase domain protein [Bacillus cereus G9842]
 gi|228795008|gb|EEM42507.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 236

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +     + 
Sbjct: 18  EVIRVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYIKDEAQ- 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 77  --VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I + VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|75761803|ref|ZP_00741737.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228900357|ref|ZP_04064586.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis IBL
           4222]
 gi|74490715|gb|EAO53997.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228859244|gb|EEN03675.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis IBL
           4222]
          Length = 236

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+   I  +     + 
Sbjct: 18  EVIRVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQGEIVHYIKDEAQ- 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 77  --VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I + VN +I QN  + TR M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVEAVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|254449956|ref|ZP_05063393.1| alanyl-transfer RNA synthetase domain protein [Octadecabacter
           antarcticus 238]
 gi|198264362|gb|EDY88632.1| alanyl-transfer RNA synthetase domain protein [Octadecabacter
           antarcticus 238]
          Length = 239

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +  ++ D + FYA +GGQ GD+G     G  + I    K A G  +        +    
Sbjct: 24  DEGGIILDASIFYATSGGQPGDSGTLTWQGGAIDIATAVKGAGGTIILVPAEPNALPAVG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +  +++++ R +    H+A HLL       +   +   G  I  +  R D      I 
Sbjct: 84  TKVSQSLNWERRHRHMRVHTALHLLS------VVIPLPVTGGSIGAEKGRLDFDMPDAI- 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYE 684
            A+  ++E+ +N++I  +  + T  ++  +  A+       ++   K   R+R+V +   
Sbjct: 137 -ADKAALENTLNELIDCHFDISTEWIDESELAANPELVKTMSVAPPKGAGRIRMVRIGAA 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +        CGGTHV +T EI  +            RR+ 
Sbjct: 196 E-NTADYQPCGGTHVRNTSEIGRIRFGKVEKKGKQNRRVY 234


>gi|91773034|ref|YP_565726.1| Ala-tRNA(Pro) hydrolase [Methanococcoides burtonii DSM 6242]
 gi|91712049|gb|ABE51976.1| Threonyl/alanyl tRNA synthetase second additional domain
           [Methanococcoides burtonii DSM 6242]
          Length = 234

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 14/220 (6%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
               VV ++T FY  +GGQ  DTG  + D     +T V K    I    +       +  
Sbjct: 23  DDRFVVLNRTAFYPSSGGQPHDTGKLVCDRKEYPVTFVGKFDGKISHEVSEAGL---KAG 79

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +  TID+  R      H+A H+L   +     +    +G+ I  +  R D    +   
Sbjct: 80  DKVKGTIDWDRRSLFMKYHTAAHILSAMIH--SETGAKISGNQIAEEKTRVDFNL-EDFD 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYED 685
              + S E  VN+II + + V   I+ R++A+   +   L   +   +   RV+ +   D
Sbjct: 137 RELIGSYEAKVNEIIDRKIDVEIEILPRDEALKIPSVVKLKDAFPPEIEEIRVIRIPDVD 196

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                   CGGTHV++TGEI  + I    +     RRI  
Sbjct: 197 D-----QACGGTHVANTGEIPHIEIFKAENKGKNNRRIYF 231


>gi|254440251|ref|ZP_05053745.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Octadecabacter antarcticus 307]
 gi|198255697|gb|EDY80011.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Octadecabacter antarcticus 307]
          Length = 239

 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +  ++ D + FYA +GGQ GD+G     G  + I    K   G  +        +    
Sbjct: 24  DEGGIILDASIFYATSGGQPGDSGTLTWQGGAIDIATSVKGEGGTIILVPAEPNPLPAIG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +  +++++ R +    H+A HLL       +   +   G  I P+  R D      I 
Sbjct: 84  TIVKQSLNWERRHRHMRVHTALHLLS------VVIPLPVTGGSIGPEKGRLDFDMPDAI- 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYE 684
             +  ++E+ +N +I  +  + T  ++  +  A+       ++   K   R+R+V +   
Sbjct: 137 -EDKAALENTLNKLIDCDFDISTEWISESELAANPELVKTMSVAPPKGAGRIRMVRIGAG 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +        CGGTHV  T EI  + +          RR+ 
Sbjct: 196 E-NTADYQPCGGTHVRHTSEIGRVRLGKVEKKGKLNRRVY 234


>gi|50306437|ref|XP_453192.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642326|emb|CAH00288.1| KLLA0D02794p [Kluyveromyces lactis]
          Length = 452

 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 102/284 (35%), Gaps = 17/284 (5%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVE 561
           +        E+    T  + E GGQ  D+G  +      + ++ V ++            
Sbjct: 45  DVGKKKNTFEIELQDTILFPEGGGQPSDSGKFLLKTGASIPVSSVFRRGLHAVHITDRDV 104

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA--LSTILGSHVSQNG---SCITPDG 616
                    + + ID+  R      H+  HL+         L +     G   S   P  
Sbjct: 105 P----VGAKVSVEIDWDKRLDYMQQHTGQHLVSAILEQKWGLKTLSWSMGGIPSEKKPKI 160

Query: 617 LRFDVTHS----KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             +D+ +     + +TS E+K + D V + I  N   +T      ++    +   +   Y
Sbjct: 161 EPYDLFNYLEINRRLTSEEVKELSDTVTEYITVNPKTITIFEGDPESQGEISTHKVPDDY 220

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI-RRIEAITGQRA 731
           +    V+ V + +    +   C GTH+ +T +I  + I+   S   G   R+  + G R 
Sbjct: 221 DLSKGVLRVVHIEDLDKN--PCCGTHLQTTSQISSVLILPSQSSVRGTNSRLFFMCGDRV 278

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           R + +  +E + +    L  S+  +  + + + +  +K      
Sbjct: 279 RRYALFSNEVISNTKKLLSCSEDQIEHKCDMLLKNMQKTTKREQ 322


>gi|257076519|ref|ZP_05570880.1| alanyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 238

 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 88/226 (38%), Gaps = 4/226 (1%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     +S +   VV D+T FY  +GGQ  DTG        ++I DV ++   I   H  
Sbjct: 14  EFDASVISVKDNYVVLDKTLFYPTSGGQPNDTGILKTSNGEMKIIDVIQEDGEI--RHIA 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +   +    ++   ID+  R      H+A H++   ++    + +   G  I  D  R 
Sbjct: 72  DKIENVTPGANVHGVIDWDKRYIHMRYHTAVHIIDGVVNNDYKNGL-LTGGQIYDDHARV 130

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +    I    +  I     D+I     V  R ++ E+A+     A          ++ 
Sbjct: 131 DFS-FDIIDRDLITQIISKAQDVINSGHKVFAREISSEEALKIPGLARTEPGRQLIEKLP 189

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            V   +         GGTHV +TGE+  + ++   +   G +R+  
Sbjct: 190 VVRIIEIENFDFQADGGTHVKNTGEVGRIEMLKIENKGKGHKRLSF 235


>gi|321249270|ref|XP_003191400.1| cytoplasm protein [Cryptococcus gattii WM276]
 gi|317457867|gb|ADV19613.1| cytoplasm protein, putative [Cryptococcus gattii WM276]
          Length = 523

 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 80/457 (17%), Positives = 141/457 (30%), Gaps = 74/457 (16%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI--- 553
           +Q  +++E   G+  EV    T  + E GGQ  DTG          +T        +   
Sbjct: 81  EQNIVLKEESKGKLWEVELLDTVIFPEGGGQPSDTGVMRLLDSNGDVTHTFPIEMCLRRK 140

Query: 554 -----FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
                 V         LR    + +  D+  R      H++ HLL   L T L       
Sbjct: 141 LDSVHLVRIPSGVEIDLREGKDVEVEADWDRRIDQMSIHTSQHLLSAILDTHLSLPTLSW 200

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-----------RIMNRE 657
                P      V   + +T  E   IE    + I Q   V               +   
Sbjct: 201 SMQPYPSIEPAYVELPRALTPDEAMEIERLCGEAIKQRKKVWVDFSIQGGDVGGEHIGEG 260

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS---ES 714
                    L        +R ++++  D        C GT   +   + LL+I+      
Sbjct: 261 TVGTREMRGLPKDYDGGVIRHINIQDTD-----RNACCGTQSPNISLLSLLHIIPPALSG 315

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-------EEY 767
             +    ++  ++G RA   L      L + A  +   + ++V R+E          +  
Sbjct: 316 PSKPSPTKLYFLSGPRAILALQQASRTLSAAAKAVGYGRADLVERLERAEVVKKDTADSL 375

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---------VDSKELKSVMDALQK 818
           + L+   AK      V+  +  +   +  +               V +  L+S+  + QK
Sbjct: 376 KGLRAELAKLVGAQAVK--AGKEGKSIVLVEREEKGTHDFDWLSLVGATYLESISASGQK 433

Query: 819 KIQ----SGIIMLVGI----SKEKKASVLIVVTEDLLDRFNAVDLARL-SAKVLGGG-GG 868
                  S +I+L           +  +LI  +++ L +     L        L G   G
Sbjct: 434 TDGKTPPSPLIILTSSITPAPATNQTLLLIQSSDNDLAK-----LVNERIKAALAGRVKG 488

Query: 869 GGRPHMAQSGGPNGNKAD--------QAIAGVASFLK 897
           GG      + G   +K D          +A V   L+
Sbjct: 489 GG------ARGRYMSKIDGKWGNVEKDVLAKVVDDLR 519


>gi|56696797|ref|YP_167158.1| hypothetical protein SPO1923 [Ruegeria pomeroyi DSS-3]
 gi|56678534|gb|AAV95200.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 240

 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 85/220 (38%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +  V+ D++ FYA  GGQ GD+G    DG  + +    K  EG                
Sbjct: 25  DEGGVILDRSLFYATGGGQPGDSGLLRWDGGEMTVATTIKAGEGAIAVLPAEGATPPPIG 84

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             ++  +D++ R      H+A HLL       +   +  +G  I  D  R D    +   
Sbjct: 85  TEVIQELDWERRHAHMRVHTALHLLS------VVIPLEVSGGAIAADKGRLDFNMPEA-- 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR----VRVVSVEYE 684
             +  ++E  +  +I ++L V    +   +  A+ A     +    R    VR+V +   
Sbjct: 137 PEDKAALEQALQALIERDLAVSEDWITDAELDANPALVKTMSVSPPRGSGRVRLVRIGQG 196

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              V     CGGTHV+ TGEI  + +          RR+ 
Sbjct: 197 ADQV-DLQPCGGTHVARTGEIGPVRLGKIEKKGRQNRRVY 235


>gi|85703002|ref|ZP_01034106.1| hypothetical protein ROS217_19712 [Roseovarius sp. 217]
 gi|85671930|gb|EAQ26787.1| hypothetical protein ROS217_19712 [Roseovarius sp. 217]
          Length = 239

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 95/241 (39%), Gaps = 18/241 (7%)

Query: 493 KAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
            A+ +Q     EA +       +  +V D   FY   GGQ GD+G     G  L I    
Sbjct: 3   IALFRQDAYQTEAEAVVTAHTPEGGIVLDHCLFYPAGGGQPGDSGRLEWRGRSLPIATAV 62

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           K         A   + +     +L  TID+  R +L   H+A HLL       +   +  
Sbjct: 63  KADGAAIALVAAEPQPLPAVGTALRQTIDWPRRHRLMRMHTALHLLS------VVIPLPV 116

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--- 664
           +G  +  +  R D    +  T  +   +ED +N ++ ++LPV    +  +   A+     
Sbjct: 117 SGGAVAEERSRLDFDMPEAPTDRDT--LEDYLNQLVDRDLPVTEDWITDDALRANPGLIK 174

Query: 665 -AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             ++     + RVR+V +      V     CGGTHV+ TGEI  L +          RR+
Sbjct: 175 TMSVAPPMGSGRVRLVRIGQGRDQV-DLQPCGGTHVARTGEIGRLRLGKFEKKGRQNRRV 233

Query: 724 E 724
            
Sbjct: 234 Y 234


>gi|126735839|ref|ZP_01751584.1| hypothetical protein RCCS2_18226 [Roseobacter sp. CCS2]
 gi|126715026|gb|EBA11892.1| hypothetical protein RCCS2_18226 [Roseobacter sp. CCS2]
          Length = 238

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 13/219 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V D T FY  +GGQ GD+G     G  + I    K      V       G+     
Sbjct: 25  EGGIVLDGTIFYPTSGGQPGDSGTLRWKGREIDIATTVKGEGDAVVLVPAEPAGMPTIGQ 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +   +++  R +    H+A HLL       +   +  +G  I  +  R D    +    
Sbjct: 85  DVTQVLNWDRRYRHMRVHTALHLLS------VVIPLPVSGGSIGAEKGRLDFDMPEA--P 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYED 685
            +  ++ED++N +IA N+ V    ++ E+  A        ++   +   R+R+V +   D
Sbjct: 137 EDKTALEDDINRLIACNMHVTEEWISDEELDAQPDLVKTMSVQPPRGTGRIRLVRIGVGD 196

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                   CGGTHV++T EI  + I          RR+ 
Sbjct: 197 -ETADLQPCGGTHVANTEEIGRVRIGKIEKKGRQNRRVY 234


>gi|227822050|ref|YP_002826021.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|227341050|gb|ACP25268.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 249

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 93/251 (37%), Gaps = 18/251 (7%)

Query: 489 SSIVKAIVQQGEIVEEAVSG-----QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--L 541
           +S V A+ ++   +    +      +   +  DQT FYA +GGQ GDTG    +      
Sbjct: 2   TSTVTALFREDFYLSTCEASVTAILEDGGIELDQTCFYATSGGQPGDTGFLEREDGSRIA 61

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
                   ++ + VH     +        LVL ID+  R +L   H+A HLL       +
Sbjct: 62  IANTRHGASKDVIVHVPADGQARPAIGEKLVLHIDWPRRYRLMRMHTACHLLS------V 115

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
                  G+ +  +  R D   S+ I   E+ +    +   +  N PV  + +  E+  A
Sbjct: 116 VCPYPITGAAVGEEESRVDFDMSETIDKDEVTAALMKL---VEANHPVYVQWITDEELAA 172

Query: 662 SGAAALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +            +   RV  V   +     S  CGGTHVS T E+  ++I         
Sbjct: 173 NPGIVKSKNVRPPSGMGRVSLVCIGESSSIDSQPCGGTHVSETQEVGAIHIAKIEKKGKE 232

Query: 720 IRRIEAITGQR 730
            RR     G  
Sbjct: 233 NRRFRIRFGTA 243


>gi|88800056|ref|ZP_01115626.1| predicted metal-dependent Hydrolase [Reinekea sp. MED297]
 gi|88777182|gb|EAR08387.1| predicted metal-dependent Hydrolase [Reinekea sp. MED297]
          Length = 241

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 11/214 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI---LRTEM 569
           V+ D T FYA +GGQ GDTG    DG+ +++ D +  A+   + H +         +T  
Sbjct: 29  VILDSTIFYALSGGQPGDTGELSADGLTVRVVDTRYDADRKTILHYLDPESPVPEWKTGQ 88

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + + ID+  R +L   H+A HLL     +++   V+  G       + FD+  +    +
Sbjct: 89  IIEMKIDWARRHRLMRMHTAMHLL----CSLIPYPVTGGGVGERESRVEFDMDTADFDKA 144

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
              + +   V   ++ ++  +T  M   +       ++   +    VR++++    G   
Sbjct: 145 DLSQKLNQLVTQNLSVDVSSITDDMLDNNPELIRTMSVQPPRGQGSVRMINI----GQGI 200

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               CGGTHV  TGEI  L +    S     +R+
Sbjct: 201 DYQPCGGTHVRETGEIGELVVTKIKSKGKQNKRV 234


>gi|83942465|ref|ZP_00954926.1| hypothetical protein EE36_15532 [Sulfitobacter sp. EE-36]
 gi|83846558|gb|EAP84434.1| hypothetical protein EE36_15532 [Sulfitobacter sp. EE-36]
          Length = 239

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 85/220 (38%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +  +V D+T FY   GGQ GD+G    D  R+ I    K  +G  +        I +  
Sbjct: 24  DEGGIVLDRTVFYPTGGGQPGDSGWLNWDKQRMPIATTVKGLDGSIILVPAEPEEIPQPG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   +D+  R +    HS  HLL       +       G  I+    R D        
Sbjct: 84  THVTQKLDWDRRHRHMRVHSLLHLLS------VVVPFPVVGGQISATHGRLDFDL--ADA 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA----ALLGTKYNDRVRVVSVEYE 684
             +   IED +   IAQ+LP+    + +E+  A+       ++        VR+V +   
Sbjct: 136 PEDRDGIEDALASYIAQDLPITDHWITQEELQAAPELVKTLSVAPPVTAANVRLVQIGEG 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           D        CGGTHV+ TGEI  + +        G RRI 
Sbjct: 196 DA-WIDLQPCGGTHVARTGEIGAVRLGKIEKKGRGTRRIY 234


>gi|83953684|ref|ZP_00962405.1| hypothetical protein NAS141_05653 [Sulfitobacter sp. NAS-14.1]
 gi|83841629|gb|EAP80798.1| hypothetical protein NAS141_05653 [Sulfitobacter sp. NAS-14.1]
          Length = 239

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 85/220 (38%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +  +V D+T FY   GGQ GD+G    D  R+ I    K  +G  +        I +  
Sbjct: 24  DEGGIVLDRTVFYPTGGGQPGDSGWLNWDKQRMPIATTVKGLDGSIILVPAEPEEIPQPG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   +D+  R +    HS  HLL       +       G  I+    R D        
Sbjct: 84  THVTQKLDWDRRHRHMRVHSLLHLLS------VVVPFPVVGGQISATHGRLDFDL--ADA 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA----ALLGTKYNDRVRVVSVEYE 684
             +   IED +   IAQ+LP+    + +E+  A+       ++        VR+V +   
Sbjct: 136 PEDRDGIEDALASYIAQDLPITDHWITQEELQAAPELVKTLSVAPPVTAANVRLVQIGEG 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           D        CGGTHV+ TGEI  + +        G RRI 
Sbjct: 196 DA-WIDLQPCGGTHVARTGEIGAVRLGKIEKKGRGTRRIY 234


>gi|146276871|ref|YP_001167030.1| threonyl/alanyl tRNA synthetase, SAD [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555112|gb|ABP69725.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides ATCC 17025]
          Length = 239

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 13/219 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  ++ D++ FY   GGQ GD+GC + +G R+ I    K   G           +     
Sbjct: 25  EGGILIDRSIFYPTGGGQPGDSGCLVWEGGRIPIATAIKAEGGRVALVPAEAAALPPEGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +   +D+  R +    H+A HLL       +   +   G  I  +  R D    +P   
Sbjct: 85  PVRQILDWDRRHRHMRVHTALHLLS------VVIPLPVTGGQIGAERGRLDFDMPEP--P 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND----RVRVVSVEYED 685
           A++ ++E+ +N ++ ++LPV    +   + +A  +     +        RVR+V +    
Sbjct: 137 ADVAALEEALNALVGRDLPVSEDWITDAELLADPSIVKTMSVMPPTGQGRVRLVRIGQGA 196

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             V     CGGTHV+ TGEI  + I          RR+ 
Sbjct: 197 DQV-DLQPCGGTHVARTGEIGRVAIGKIEKKGRQNRRVT 234


>gi|163796942|ref|ZP_02190898.1| predicted metal-dependent hydrolase [alpha proteobacterium BAL199]
 gi|159177689|gb|EDP62240.1| predicted metal-dependent hydrolase [alpha proteobacterium BAL199]
          Length = 236

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 86/222 (38%), Gaps = 11/222 (4%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
              +  +  +V D+T FY   GGQ GD+G               +K EG   H       
Sbjct: 18  TVTAVGETGIVLDRTVFYPTGGGQPGDSGSLTRPDGAQVSITDTRKVEGGIAHVPAEGAA 77

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +L     +  T+D+  R +    H+A H++   +   +       G  I     R D   
Sbjct: 78  MLSVGDKVTATLDWDRRYRHMRVHTALHVMCSQIQGGVT------GGQIGDGKGRLDFNL 131

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG--AAALLGTKYNDRVRVVSV 681
            +P    E +S+ +++N +IA + P+    +  E+  A+      +         RV  +
Sbjct: 132 -EPENVPEKESLTEHLNALIAVDHPLGISWITDEELTANPDLVRTMSVKPPMGAGRVRMI 190

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              D   +    CGGTHV STGEI  + I    S     RRI
Sbjct: 191 RIGDAVDY--QPCGGTHVKSTGEIGRIAITKIESKGKQNRRI 230


>gi|312109703|ref|YP_003988019.1| threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y4.1MC1]
 gi|311214804|gb|ADP73408.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y4.1MC1]
          Length = 256

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           + +  ++ +++ D+T FY   GGQ  DTG         ++  VQ++   I  +   +E+ 
Sbjct: 18  KVIEIKEDKIILDETIFYPTGGGQPHDTGMIKQGNETFKVNKVQRENGQIVHYVDNIEKL 77

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
               +  + + ID+  R +    HS  H+L   L           G+ I  D  R D   
Sbjct: 78  ---KQGPVEILIDWDRRYKFMRYHSLLHVLAGYL--YNKFGALAIGNQIFEDRARIDFQF 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P+T+ +   IED +N +I ++  V  R ++RE+A     +            + +V  
Sbjct: 133 EEPLTNEQFNEIEDEINKLIQEDHQVSIRTVSREEAERIDGSIKTVINLLPP-SIKNVRL 191

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              G      CGGTHV  T EI    I    S     +R+E
Sbjct: 192 VAIGDIDEQACGGTHVKETKEIGPFQISKIKSKGQNKKRLE 232


>gi|118431256|ref|NP_147589.2| misacylated tRNAala hydrolase AlaX [Aeropyrum pernix K1]
 gi|116062579|dbj|BAA79887.2| misacylated tRNAala hydrolase AlaX [Aeropyrum pernix K1]
          Length = 249

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 7/235 (2%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYA-EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           E            VV D+T F+    GG   DTG       R ++     + + +  H+ 
Sbjct: 15  EFEARVEEASGGRVVLDRTAFHPGPHGGLDTDTGYIFYGDKRYRVVRAAVEGD-VVAHYL 73

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
             +   L     +   ID++ R ++   H+ +H+L   L       V+  G  ITPD  +
Sbjct: 74  DSDTATLEPGAVVKGVIDWERRYRMMRLHTFSHILAAVLYEKHDVLVT--GGHITPDYGK 131

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D +         ++      N+I ++ + V    + RE+A+       L  K    V  
Sbjct: 132 DDFSIEGGGWREVIEEAFREANEIASRCIEVKVYWLPREEALKIPGIVKLANKLPPEVET 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + +    G        GG HV +T EI  + I    S     +R+   T + A  
Sbjct: 192 LRIVEIPGVD--VQADGGPHVRNTCEIGRVVITKLESKGKRRKRVYY-TLEEALE 243


>gi|295401328|ref|ZP_06811299.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976543|gb|EFG52150.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 238

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           + +  ++ +++ D+T FY   GGQ  DTG         ++  VQ++   I  +   +E+ 
Sbjct: 18  KVIEIKEDKIILDETIFYPTGGGQPHDTGMIKQGNETFKVNKVQRENGQIVHYVDNIEKL 77

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
               +  + + ID+  R +    HS  H+L   L           G+ I  D  R D   
Sbjct: 78  ---KQGPVEILIDWDRRYKFMRYHSLLHVLAGYL--YNKFGALAIGNQIFEDRARIDFQF 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P+T+ +   IED +N +I ++  V  R ++RE+A     +            + +V  
Sbjct: 133 EEPLTNEQFNEIEDEINKLIQEDHQVSIRTVSREEAERIDGSIKTVINLLPP-SIKNVRL 191

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              G      CGGTHV  T EI    I    S     +R+E
Sbjct: 192 VAIGDIDEQACGGTHVKETKEIGPFQISKIKSKGQNKKRLE 232


>gi|82548305|gb|ABB82995.1| putative metal-dependent hydrolase related to alanyl-tRNA
           synthetase [uncultured organism HF10_3D09]
          Length = 242

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 13/230 (5%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   + ++  + +V+ DQT FY   GGQ  D G   G    + + +V+ +     +HH +
Sbjct: 18  EFSAKVLAIDQNKVILDQTLFYPLGGGQNWDLGTLQGPNGEMNVIEVRGRDS---IHHTV 74

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +   L    ++   ID++ R      H+A HL+      + G  V   G+ I  D  R 
Sbjct: 75  DDTFDLEVGDAVHGKIDFERRYAHMRMHTAQHLVSGIAYEMFG-GVRTVGNQIHTDQSRI 133

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED----AIASGAAALLGTKYNDR 675
           D       T   L +++++VN  I QNL V    M R +             L   +   
Sbjct: 134 DF-KPIQFTEEMLANLQESVNHQITQNLDVTDSQMTRAEINSIMPEERTNMDLLPSFITD 192

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +RV+++  +         C GTHV +  EI  +    + S   G +R+  
Sbjct: 193 LRVITIGDK----QDLCPCAGTHVRNISEIKGIEFTGKKSKGKGTQRVTY 238


>gi|222085755|ref|YP_002544285.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
 gi|221723203|gb|ACM26359.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
          Length = 245

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 90/246 (36%), Gaps = 18/246 (7%)

Query: 492 VKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQIT 544
           V A+ +    +  A +      +   +  DQT FYA +GGQ GDTG          +   
Sbjct: 3   VNALYRDDFYLSTAEAVVTAIHEDGGIELDQTCFYATSGGQPGDTGFLERADGSKIMLGQ 62

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
                 + I +H  +           LVL +D+  R +L   H+A HLL       +   
Sbjct: 63  TRHGPIKDIIIHVPLESEAQPILGEKLVLHVDWPRRYKLMRMHTACHLLS------VVCQ 116

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G+ +  D  R D   S+ I   E+ +    +   + +N PV  + +  E+  A+  
Sbjct: 117 FPITGAAVGEDESRVDFDMSETIDKDEVTAKMMAL---VNENHPVFVQWITDEELAANPG 173

Query: 665 AALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                         RV  V   +     S  CGGTHVS T E+  ++I          RR
Sbjct: 174 IVKSKNVRPPVGLGRVSLVCIGENSAVDSQPCGGTHVSETQEVGAIHIAKIEKKGKENRR 233

Query: 723 IEAITG 728
                G
Sbjct: 234 FRIRFG 239


>gi|171185920|ref|YP_001794839.1| threonyl/alanyl tRNA synthetase SAD [Thermoproteus neutrophilus
           V24Sta]
 gi|170935132|gb|ACB40393.1| Threonyl/alanyl tRNA synthetase SAD [Thermoproteus neutrophilus
           V24Sta]
          Length = 238

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 77/216 (35%), Gaps = 5/216 (2%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EVV DQT F+   GG   DTG     G     T V K  E   V H +      +   ++
Sbjct: 27  EVVLDQTAFHDGTGGVQADTGVLYYGGESYAATAVHKGGE---VVHVLDRSPSFKPGEAV 83

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D+  R +    H+A H+L   L     + ++            F+V          
Sbjct: 84  RGVVDWDKRYRKMRLHTAAHILSAVLYRRHNALITGGDITPEYARDDFNVEGDMATVKRI 143

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            +      N+I  + + V    + RE+A+       L  K    V  + +    G     
Sbjct: 144 FEEAVAEANEIARRGIEVKVYWLPREEALKIPGVVKLAEKMPPEVPRLRIVEIPGVD--I 201

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
              GG HV +T EI  + I+   +   G +RI    
Sbjct: 202 QADGGPHVRNTSEIGTIKILKVENRGRGKKRIYYTV 237


>gi|289608568|emb|CBI60567.1| unnamed protein product [Sordaria macrospora]
          Length = 80

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 10/75 (13%)

Query: 150 KIIRITTNDNFWS--MAETG-----PCGPCSEIFFDQGECIPG---GLPGSSEEGERYIE 199
           ++      +N+WS      G     PCGP SE+F+D G  +     G P  + EG R++E
Sbjct: 5   RVFLYDAEENWWSRGGGLEGTPVGDPCGPDSEVFYDLGPELHDPSTGEPHPASEGGRFVE 64

Query: 200 IWNLVFMQFEQQNKQ 214
           I N VFM++ + ++ 
Sbjct: 65  IGNQVFMRYRRTSEG 79


>gi|116335011|ref|YP_802506.1| putative alanyl-tRNA synthetase [Candidatus Carsonella ruddii PV]
 gi|116235292|dbj|BAF35140.1| putative alanyl-tRNA synthetase [Candidatus Carsonella ruddii PV]
          Length = 328

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 108/269 (40%), Gaps = 33/269 (12%)

Query: 35  TLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHND--LDNVGRTNRHHTFFEM 92
           TL+F NSG+   K             +++ Q CVR  G +ND  L N      H T F M
Sbjct: 27  TLIFVNSGLASLKKF----VFRSNVEISSFQYCVRMQGIYNDFKLTN---DGIHQTSFLM 79

Query: 93  LGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKII 152
           LGNF+                L     L+ ++L+ T+   D   +     I  L  +   
Sbjct: 80  LGNFTKKNNINNFKKIKKILFL---IKLNFKKLFFTININD---YLNIILILILKININQ 133

Query: 153 RITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN 212
            I TN N W + + G CG   EI+               +  ++ +EIWN+V + F ++ 
Sbjct: 134 VIFTNKNIWKINKNGYCGFSLEIYI--------------KISKKLLEIWNIVNVSFIKKK 179

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDI---DLFKHLIQASEQVTGMKYEGNNI 269
           K+ +F+  K  IDTG+GL R+  V ++K N  +    D+F  +      +   K      
Sbjct: 180 KKIKFLK-KKIIDTGLGLNRIIYVFKKKNNKINYKLYDIFNSIFLIFSYLKNKKNIFFIN 238

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRG 298
              + I+     ++F I   I      + 
Sbjct: 239 KLIKKILIFSYKNNFKIWYFIFYFFLKKK 267


>gi|228907407|ref|ZP_04071265.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis IBL
           200]
 gi|228852268|gb|EEM97064.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis IBL
           200]
          Length = 236

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 14/225 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ E I  +     + 
Sbjct: 18  EVIRVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQEEIVHYIKDEAQ- 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 77  --VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVV 679
            + ++S E++ I + VN +I QN  + T  M+RE+A  +                 +R+V
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTCYMSREEAENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 193 TIENLDE-----QACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|170290362|ref|YP_001737178.1| threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174442|gb|ACB07495.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 234

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 86/215 (40%), Gaps = 8/215 (3%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +  D+T F+  +GG   DTG       R  + DV ++ +   V H +  +  L     + 
Sbjct: 27  LFLDRTAFHPTSGGVANDTGFIESSSGRWNVIDVIEEGD---VAHLLDSKPDLSVGDIVR 83

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+  R +L   H+A H+L   L    G+ V+  G  I P+  + D +  +       
Sbjct: 84  GHIDWDRRYRLMRLHTADHILTAILYKEKGALVT--GGHIDPEYAKSDFSL-ERGEREVF 140

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           +     VN+I +  + V    + RE+A+       L  K    +  + +    G      
Sbjct: 141 EEAIKKVNEIASSGIEVKIYFLPREEAMKIPGIVKLAAKMPPTLEKLRIVEIPG--IDIQ 198

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             GG HV +T EI  + ++   +   G +R+    
Sbjct: 199 ADGGPHVRNTREIGEVKLLKVENKGKGKKRVYFTV 233


>gi|83951321|ref|ZP_00960053.1| Alanyl-transfer RNA synthetase domain protein [Roseovarius
           nubinhibens ISM]
 gi|83836327|gb|EAP75624.1| Alanyl-transfer RNA synthetase domain protein [Roseovarius
           nubinhibens ISM]
          Length = 238

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 87/223 (39%), Gaps = 13/223 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V DQT FY   GGQ GD+G    D   + I    +      V      R +     
Sbjct: 25  EGGIVLDQTVFYPAGGGQPGDSGRLSWDRSEMTIATAVRGEGDQVVLVPAEPRRLPPVGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            L   ID++ R +    H+A H+L       +   +   G  +     R D    +    
Sbjct: 85  HLEQRIDWERRHRHMRMHTALHILS------VVIPLPVVGGAVGDGRGRLDFDMGEASAD 138

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNR----EDAIASGAAALLGTKYNDRVRVVSVEYED 685
            E   +E+ +N+ + ++LPV    + +    E+         +  +  DRVR+V +    
Sbjct: 139 VET--LEELLNEAVDRDLPVEEEWITQTALAENPQLIKTVGAMPPRGVDRVRLVRIGTG- 195

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G       CGGTHV+ TGEI  L I    S     RR+    G
Sbjct: 196 GDQIDLQPCGGTHVARTGEIGHLRISRIESRGRRTRRVTLTLG 238


>gi|149508352|ref|XP_001507948.1| PREDICTED: similar to Aars2 protein [Ornithorhynchus anatinus]
          Length = 725

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 99/271 (36%), Gaps = 11/271 (4%)

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                       Q          ++ V  +    G  ++EA  GQK  ++ D+T FYAE 
Sbjct: 62  PTDDSPKYHYSLQPDGSYEFGVCAANVLQLYGADGAALDEAGGGQKCGLLLDRTSFYAEQ 121

Query: 525 GGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ GD G   I     +       +  G FV H +   G LR    + L +D   R   
Sbjct: 122 GGQAGDRGYLLIEGQQDVLFPVAGAQLSGGFVLHEVTAYGRLRVGDRVQLFVDEAWRLGC 181

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+ATHLL  AL  +LG  V+Q G+ + P+ LRFDV   +   +  + S         
Sbjct: 182 MEKHTATHLLSWALRRVLGPEVAQRGAHLGPEQLRFDVATKEEQVAWGVPSDPPVPRGRR 241

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
               P              G              +  V    G           H+  TG
Sbjct: 242 RPPGPSW---------NDLGERRREPGVSPGPPALHRVGSFPGQPSPPRRGVVRHLLRTG 292

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            I  L IV +  +  G  R+ A+TG++A+  
Sbjct: 293 AIGDLSIVGDRQVVKGTVRLVAVTGEQAQQA 323


>gi|126737580|ref|ZP_01753310.1| hypothetical protein RSK20926_18102 [Roseobacter sp. SK209-2-6]
 gi|126720973|gb|EBA17677.1| hypothetical protein RSK20926_18102 [Roseobacter sp. SK209-2-6]
          Length = 249

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 10/233 (4%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A +++      A  G+   ++ +Q+ FY   GGQ GD G     G    + +  K AEG 
Sbjct: 20  AYLKEATSKVVAHEGE-GGLLLEQSLFYPTGGGQPGDAGRLTWQGGSCDVINTVKSAEGH 78

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            +      + +      +   +D+  R      H+A HLL       +   +  +G  I 
Sbjct: 79  PLLLIAEGQDLPPVGAEVQQELDWARRYGHMRVHTALHLLS------VVIPLEVSGGSIA 132

Query: 614 PDGLRFDVTHSKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
               R D    +     E   ++++  ++  +  +   +T      +       ++   +
Sbjct: 133 AAKGRLDFNMPEAPEDKEALQEALQALIDQDLEVSESWITDAELDANPQLVKTMSVSPPR 192

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            + RVR+V +   D        CGGTHV  TGEI  + +          RR+ 
Sbjct: 193 GSGRVRLVRI-GTDAEQIDLQPCGGTHVKRTGEIGKIRLGKVEKKGRQNRRVY 244


>gi|311257020|ref|XP_003126919.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 81

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 826 MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ML  +  E  K   L  V +++ +R   A +  +  +  L  G GGG+   AQ+ G N  
Sbjct: 1   MLFTVDNEAGKIICLCQVPQNIANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVG 59

Query: 884 KADQAIAGVASFLK 897
              +A+    SF +
Sbjct: 60  CLQEALQLATSFAQ 73


>gi|18313258|ref|NP_559925.1| alanyl-tRNA synthetase related protein [Pyrobaculum aerophilum str.
           IM2]
 gi|18160779|gb|AAL64107.1| alanyl-tRNA synthetase related protein [Pyrobaculum aerophilum str.
           IM2]
          Length = 238

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 5/228 (2%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     +     EV+ D+T F+   GG   D+G  I    R       K  E + V    
Sbjct: 15  EFEATVLEVNGNEVILDRTAFHDGTGGVQADSGYIIFGNERYFAAASHKGGEVVHVLDRA 74

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +   +D++ R +    H+A H+L   L     + ++            F
Sbjct: 75  PVFKP---GDVVRGELDWEKRYKKMRLHTAAHILSAVLYDKYNALITGGEITHEYARDDF 131

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           ++           +     VN+I  + + +    + RE+A+       L  +    +  +
Sbjct: 132 NIEGDMATVRKAFEEAVAVVNEIAQRGIEIKVYWLPREEALKIPGVVKLAERMPPDIPRL 191

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            +    G        GG HV +T EI ++ I+   +   G +R+    
Sbjct: 192 RIVEIPGVD--VQADGGPHVKNTREIGVVKIIKVENRGKGKKRLYYTV 237


>gi|126460266|ref|YP_001056544.1| Ala-tRNA(Pro) hydrolase [Pyrobaculum calidifontis JCM 11548]
 gi|126249987|gb|ABO09078.1| Ala-tRNA(Pro) hydrolase [Pyrobaculum calidifontis JCM 11548]
          Length = 238

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 80/228 (35%), Gaps = 5/228 (2%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     +    VEVV D+T F+   GG   DTG  I  G   Q     K  E   V H +
Sbjct: 15  EFEATVLEVNGVEVVLDKTAFHDGTGGVQADTGVLIFGGEVYQAVAAHKGGE---VAHVL 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 R    +   +D++ R +    H+A H+L   L     + ++            F
Sbjct: 72  DRAPAFRPGDVVKGVLDWEKRYRKMRLHTAAHILAAVLYNKYNALITGGDITHEYARDDF 131

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           ++           +      N I  + + V    + RE+A+       L  K    + ++
Sbjct: 132 NIEGDMAAVRKAFEEAVAEANAIAQRGIDVKVYWLPREEALKIPGVVKLAEKMPPNIPIL 191

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            +    G        GG HV +T EI  + I+   +   G +R+    
Sbjct: 192 RIVEIPGVD--IQADGGPHVRNTREIGTIKILKIENRGKGKKRLYYTV 237


>gi|312962489|ref|ZP_07776980.1| threonyl/alanyl tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311283416|gb|EFQ62006.1| threonyl/alanyl tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 242

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 78/232 (33%), Gaps = 20/232 (8%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFV 555
                  ++  +  +  + T FY   GGQ GDTG           +  T        I  
Sbjct: 19  NAFSARVIAVSEQGIALEHTLFYPTGGGQPGDTGHLTLPDGTRLDVTGTVRDPVLRSIIW 78

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H        L   + +   +D++ R Q    H+  HLL   +           G  I+ D
Sbjct: 79  HQVEHCPEQLIAGVQVDAGLDWERRYQHMKMHTCLHLLCSII------DAPVTGCSISAD 132

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA----ALLGTK 671
             R D    +     +  SI  ++N +I Q  PV T  M   +           A+    
Sbjct: 133 KGRLDFDLPEMT--LDKDSITRDLNALIEQAHPVKTLSMAATEYSTLLQITRTQAVAPPV 190

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               VRV+ +   D        CGGTHV +T EI  ++           RR+
Sbjct: 191 IQGSVRVIEIAGID-----IQPCGGTHVINTEEIGRVFCEKIEKKSKHNRRV 237


>gi|15615496|ref|NP_243800.1| hypothetical protein BH2934 [Bacillus halodurans C-125]
 gi|10175556|dbj|BAB06653.1| BH2934 [Bacillus halodurans C-125]
          Length = 242

 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 81/213 (38%), Gaps = 7/213 (3%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T F+   GGQ  D G    +G   ++ +V+K+ E I  +    +      E  + 
Sbjct: 27  VILEETIFHPNGGGQPNDEGWLYQNGKAYKVINVRKEGEEIIHYLEDADD---LEEDEVR 83

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + I++  R      H+  HL+   L           G+ I  +  R D+         + 
Sbjct: 84  MKINWSRRYNFMKYHTLLHLVAGHL--YHEYGALAIGNQIFENRARLDIDFRGGELDVDF 141

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             +E+ +N +I +   +  R + R+    S     +       V+  ++           
Sbjct: 142 HRVEEELNRLINEGRKMNIRNVERDSESISEKIRTVINLIPASVK--NIRLVAIENMDEQ 199

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            C GTHV++  EI    I    S   G RR+E 
Sbjct: 200 PCSGTHVNNINEIGPFKISGNKSKGKGKRRLEF 232


>gi|297527295|ref|YP_003669319.1| Threonyl/alanyl tRNA synthetase SAD [Staphylothermus hellenicus DSM
           12710]
 gi|297256211|gb|ADI32420.1| Threonyl/alanyl tRNA synthetase SAD [Staphylothermus hellenicus DSM
           12710]
          Length = 239

 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 5/229 (2%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E +         ++VF+ T F+  +GG   DTG  + DG   ++  V        V H 
Sbjct: 14  KENIARVREVIGNKIVFNTTIFHPRSGGVDHDTGKLVKDGGEYRVVQVLIDKNIGDVVHI 73

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     L+    +   ID+  R +L   H+A H+L  A            G  I+ +   
Sbjct: 74  VDGEHDLKVGDVVKQVIDWNRRYKLMRLHTAAHIL--ASIMYNEHGALITGGNISEEYAY 131

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D +  +         I +  N II +N+ V    + RE+A+       L  +    + V
Sbjct: 132 DDYSL-EEFNKELFLDIVEKANQIIKRNIEVKIYWLPREEALKIPGIVKLAKRTPPNIDV 190

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           + +    G        GG HV +TGEI  +  +   +     +R+    
Sbjct: 191 LRIVEIPGVD--IQADGGPHVKNTGEIGEIVPLKIVNKGRKRKRLYYTV 237


>gi|150396580|ref|YP_001327047.1| threonyl/alanyl tRNA synthetase SAD [Sinorhizobium medicae WSM419]
 gi|150028095|gb|ABR60212.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium medicae WSM419]
          Length = 249

 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 92/255 (36%), Gaps = 25/255 (9%)

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           R V          +   + V AI++ G             +  DQT FYA +GGQ GD G
Sbjct: 3   RSVTALFREDFYLSTCEASVTAILEDG------------GIELDQTCFYATSGGQPGDKG 50

Query: 533 CAIGDGIRLQITDVQKKA--EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
               +          +    + I +H       +      LVL ID+  R +L   H+A 
Sbjct: 51  FLEREDGSRIDIIDTRHGATKDIILHIPAEGARMPDVGEKLVLHIDWPRRYRLMRMHTAC 110

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL       +       G+ +  +  R D   S+ I   ++ +    +   + +N PV 
Sbjct: 111 HLLS------VVCPFPITGAAVGEEESRVDFDMSELIDKDQVTAALMKL---VHENHPVY 161

Query: 651 TRIMNREDAIASGAAALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
            + +  E+  A+ A              RV  V   +     S  CGGTHVS T E+  +
Sbjct: 162 VQWITDEELAANPAIVKSKNVRPPMGLGRVSLVCIGENSSVDSQPCGGTHVSETQEVGAI 221

Query: 709 YIVSESSIRAGIRRI 723
           +I          RR 
Sbjct: 222 HIAKIEKKGKENRRF 236


>gi|15965373|ref|NP_385726.1| hypothetical protein SMc01173 [Sinorhizobium meliloti 1021]
 gi|307308761|ref|ZP_07588457.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium meliloti BL225C]
 gi|307317234|ref|ZP_07596675.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium meliloti AK83]
 gi|15074553|emb|CAC46199.1| Probable alanyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|306897322|gb|EFN28067.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium meliloti AK83]
 gi|306900767|gb|EFN31378.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium meliloti BL225C]
          Length = 249

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 90/246 (36%), Gaps = 22/246 (8%)

Query: 489 SSIVKAIVQQG-------EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
           +  V A+ +           V   + G    +  DQT FYA +GGQ GDTG    +    
Sbjct: 2   TGTVTALFRDDFYLSTCEARVTAILEG--GGIELDQTCFYATSGGQPGDTGFLEREDGSR 59

Query: 542 QITDVQKKAEG--IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
                 +      + VH +     +      LVL ID+  R +L   H+A HLL      
Sbjct: 60  IDIVETRHGANKDVIVHMSADGAPVPAVGEKLVLHIDWPRRYRLMRMHTACHLLS----- 114

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            +       G+ +  +  R D   S+ I   E+ +    +   + +N PV  + +  E+ 
Sbjct: 115 -VVCPFPITGAAVGEEESRVDFDMSETIDKDEVTAGLMKL---VEENHPVYVQWITDEEL 170

Query: 660 IASGAAALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A+                RV  V   +     S  CGGTHVS T E+  ++I       
Sbjct: 171 AANPGIVKSKNVRPPMGLGRVSLVCIGENSSIDSQPCGGTHVSETQEVGAIHIAKIEKKG 230

Query: 718 AGIRRI 723
              RR 
Sbjct: 231 KENRRF 236


>gi|255261320|ref|ZP_05340662.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255103655|gb|EET46329.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 239

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 13/219 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V DQT FY   GGQ GD+G    D   ++I    K      V        +    +
Sbjct: 25  EGGIVLDQTIFYPTGGGQPGDSGRLTWDEGAIEIATTIKGEGTDIVLVPAEPSALPPEGV 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++   +D+  R +    H+A HLL       +   +   G  I  +  R D      +  
Sbjct: 85  AVKQELDWDRRHRHMRVHTALHLLS------VVIPLPVTGGQIGAEKGRLDFNMPVAL-- 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYED 685
                IE+ +N +IA + PV T  ++  +  A+       ++   +    +R+V +   D
Sbjct: 137 ENKDEIEETLNKLIACDFPVTTESISEVELDANPGLVKTMSVQPPRGTGHIRLVRIGEGD 196

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             +     CGGTHV+ T EI  + +    +     RR+ 
Sbjct: 197 -NMADLQPCGGTHVAHTIEIGRVRLGKVENKGKQNRRVH 234


>gi|221633766|ref|YP_002522992.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221155914|gb|ACM05041.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 251

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 12/225 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D+T FY   GGQ  DTG  +    R       ++         +++R       ++ 
Sbjct: 29  VILDRTAFYPGGGGQPHDTGELVSTDGRSWRVVSLRRGTTADEIVHLLDREPPPVGTAVR 88

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D+  R +L   H+A H+L   +    G+ V+     +    + F++   + +    +
Sbjct: 89  GVLDWDRRYRLMRFHTALHVLSAVVFREFGALVTGANLDVDKARMDFEL---EDLAPERV 145

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDGGV 688
             IE   N+ IA+ LPV    + R +A                    +RVV +   D   
Sbjct: 146 ARIEQLANEAIARGLPVRWWTIPRAEAERIPDLIRTKVNLLPPSIQSIRVVEISGLD--- 202

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
                 GGTHV +T EI  + +V   S     +RIE     +A +
Sbjct: 203 --LQADGGTHVRNTREIGGIRVVGTRSKGRNNKRIEITLVDQAEN 245


>gi|114707282|ref|ZP_01440179.1| Alanyl-transfer RNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114537163|gb|EAU40290.1| Alanyl-transfer RNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 253

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 13/227 (5%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI--FVHHAIVERGI 564
            G+   +VFD+T FYA  GGQ GD G                 +      V  A     +
Sbjct: 33  EGENG-LVFDRTNFYATGGGQPGDRGFVEQSDGTKIQIVETAYSSNARDVVMFAGESALL 91

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                +L L ID++ R +L   H+A HLL       +       G+ +  +  R D    
Sbjct: 92  PELGETLTLHIDWKRRYKLMRMHTACHLLS------VVCPYPITGAAVGEEESRIDFDWP 145

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT--KYNDRVRVVSVE 682
           +   +AE ++I + V +I+A N PV T+ +   +  A+                 +  V 
Sbjct: 146 EA--AAEKQAISERVMEIVAANHPVFTKTITEAELEATPGLVKSANVKPPKGTCVIRLVC 203

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
             +     +  CGGTHVS TGE+  ++I          RR+    G 
Sbjct: 204 IGENSSVDAQPCGGTHVSETGEVGEVHIGKIEKKGKANRRMRIRFGP 250


>gi|90419363|ref|ZP_01227273.1| possible alanyl-tRNA synthetase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336300|gb|EAS50041.1| possible alanyl-tRNA synthetase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 251

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 86/233 (36%), Gaps = 13/233 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI--FVHHA 558
            V+    G+   +VF +T F+A  GGQ GDTG       R         A      +   
Sbjct: 25  RVDTTADGRPG-LVFARTNFFAAGGGQPGDTGFVETADGRQVKIVDTVYAADKSTILMLV 83

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
             +  + +   +LVL +D++ R +L   H+A HLL       +       G+ +  D  R
Sbjct: 84  EDDAALPQPGETLVLHVDWKRRYKLMRMHTACHLL------TVVCPFPITGAAVGEDESR 137

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT--KYNDRV 676
            D    +        +      +++  N PV TR ++  +  A+                
Sbjct: 138 VDFDIPEGAPDKAEVTAGLM--ELVEANHPVFTRWISDAELDANPGLVKSANVKPPRGTG 195

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
           R+  V   D G   +  CGGTHV  TGE+  ++I          RR     G 
Sbjct: 196 RIRLVCVGDEGAVDTQPCGGTHVLETGEVGEIHIGKIEKKGKVNRRFRIRFGP 248


>gi|126726809|ref|ZP_01742648.1| hypothetical protein RB2150_02814 [Rhodobacterales bacterium
           HTCC2150]
 gi|126703767|gb|EBA02861.1| hypothetical protein RB2150_02814 [Rhodobacterales bacterium
           HTCC2150]
          Length = 239

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 13/228 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
             E A    +  VV   + FY   GGQ GD G       R+++    K   G  V    +
Sbjct: 16  ETEVAEITTEGGVVLKDSIFYPTGGGQPGDNGYLTWGDNRMEVATTIKGEGGAIVLLPPM 75

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
              +      +   +D+  R  L   H+A HLL       +   +   G  I  +  R D
Sbjct: 76  AGSLPPVGTKVTQILDWPRRHALMQMHTALHLLS------VVIPLPVTGGAIGAEKSRLD 129

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRV 676
                     +   + D++N +I Q+L V    ++  +  A+       ++   +   ++
Sbjct: 130 FDMPDA--PEDKNRVLDDLNALIDQDLLVSDSWISEAELDANPSLVKTMSVAPPRGRGKI 187

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           R+V +   D  +     CGGTHV  TGEI  L I          RR+ 
Sbjct: 188 RMVQIGEGD-QIVDYQPCGGTHVLRTGEIGTLRIGKIEKKGQRNRRVY 234


>gi|145591738|ref|YP_001153740.1| threonyl/alanyl tRNA synthetase, SAD [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283506|gb|ABP51088.1| Ala-tRNA(Pro) hydrolase [Pyrobaculum arsenaticum DSM 13514]
          Length = 238

 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 89/239 (37%), Gaps = 9/239 (3%)

Query: 493 KAIVQQGEIVEEAV----SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
           K + Q+   ++EA          EVV D+T F+  AGG   D+G  +  G R       K
Sbjct: 4   KLLYQEDSYLKEAEATVLEISGNEVVLDKTVFHDGAGGVAADSGYIVYGGERYSAIAAHK 63

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
             E   V H +      +    +V  + ++ R +    H+A H+L   L    G+ ++  
Sbjct: 64  GGE---VVHVLDRAPSFKPGDVVVGVVHWEKRYRKMRLHTAAHILSAVLYNRHGALITGG 120

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
                     F+V           +     VN+I A+ + V    + RE+A+       L
Sbjct: 121 DITHEYARDDFNVEGDMATVRKIFEEAVAEVNEIAARGIEVKVYWLPREEALKIPGVVKL 180

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             K    +  + +    G        GG HV +T EI  + I+   +   G +R+    
Sbjct: 181 AEKMPPDIPTLRIVEIPGVD--IQADGGPHVRNTKEIGTVKILKVENRGKGKKRLYYTV 237


>gi|229592029|ref|YP_002874148.1| putative alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|229363895|emb|CAY51388.1| putative alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 242

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFV 555
                  ++  +  +  + T FY   GGQ GDTG      G  + +  T        I  
Sbjct: 19  NAFSARVIAVSEHGIALEHTLFYPTGGGQPGDTGHLTLADGTRVEVTGTVRDPVQRSIIW 78

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H        L   + +   +D++ R Q    H+  HLL   +           G  I+ D
Sbjct: 79  HQVEHWPEQLTAGVQVDAGLDWERRYQHMKMHTCLHLLCSII------DAPVTGCSISAD 132

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA----ALLGTK 671
             R D    +     +  SI  ++N +I Q   V T  M   +           A+    
Sbjct: 133 KGRLDFDLPEMT--LDKDSITRDLNALIEQAHAVKTLSMPASEYSTLLQITRTQAVAPPV 190

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               VRV+ +   D        CGGTHV +T EI  ++           RR+
Sbjct: 191 IQGSVRVIEIAGID-----IQPCGGTHVLNTEEIGRVFCEKIEKKSKHNRRV 237


>gi|269836349|ref|YP_003318577.1| Threonyl/alanyl tRNA synthetase SAD [Sphaerobacter thermophilus DSM
           20745]
 gi|269785612|gb|ACZ37755.1| Threonyl/alanyl tRNA synthetase SAD [Sphaerobacter thermophilus DSM
           20745]
          Length = 247

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 94/239 (39%), Gaps = 15/239 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
            AV G+   VV D+T FY   GGQ  D G         Q+  + ++   I   H +    
Sbjct: 20  TAVVGETG-VVLDRTAFYPGGGGQPHDLGTLTDGTHSWQVVRIAREDGQIV--HVLEGGA 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                 +L   ID+  R +L   HSA H+L   +    G+ V+  G  + PD  R D   
Sbjct: 77  PPPPGTALRGEIDWDRRYRLMRMHSALHVLCGVVFREYGALVT--GGNMGPDKARMDF-E 133

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY----NDRVRVV 679
            + +    +  IE   N+ IA  LP+  R + RE+A                    VRVV
Sbjct: 134 LEDLNPERVAHIERTANERIAAGLPISWRTLPREEAFQIPDLIRTKINLLPAHIQEVRVV 193

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
            +E  D         GGTHV +T EI  L ++   S     +R+E      A     G+
Sbjct: 194 EIEGLD-----LQADGGTHVRNTREIGGLKVIGTRSKGRINKRLEIALVDDAVDEERGE 247


>gi|255513359|gb|EET89625.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 237

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 7/231 (3%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A V+  E      S     V  D+T FY   GGQ  D+G       R ++ +V K  +  
Sbjct: 10  AYVKDFEA--TVSSVDNQIVELDRTAFYPTGGGQPSDSGTISFGNSRYKVIEVSKSGDS- 66

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            V H +     L     +   +D++ R      H+A H++   +   L  +++  G  I 
Sbjct: 67  -VLHKMENAQGLEAGTQIEGHLDWEKRYMHMRLHTALHIIDGVVHKNLDGNIT--GGQIY 123

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            D  R D      +   +++ I +   +I+ + L V  + M++E+A A    A       
Sbjct: 124 DDRARMDFDVPG-LDRQKVEKIIEAAQEIVDKRLTVSVKFMSKEEASAVPGIARTAPGEE 182

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              ++  +   D       L GGTHV++T E+  + I+   +  +  +RIE
Sbjct: 183 LMRKLDIIRIIDIEGFDFQLDGGTHVANTSEVGKIGIIKYENKGSHNKRIE 233


>gi|126466032|ref|YP_001041141.1| Ala-tRNA(Pro) hydrolase [Staphylothermus marinus F1]
 gi|126014855|gb|ABN70233.1| Ala-tRNA(Pro) hydrolase [Staphylothermus marinus F1]
          Length = 239

 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 81/215 (37%), Gaps = 5/215 (2%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +VFD T F+  +GG   DTG  + D    ++  V        V H +     L+    + 
Sbjct: 28  IVFDTTIFHPRSGGVDHDTGKLVKDNKEYRVVQVLFDKNIGDVVHIVDGEHDLKAGDVVK 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+  R +L   H+A H+L   +           G  I+ +    D +  +       
Sbjct: 88  QVIDWNRRYKLMRLHTAAHILASVMYR--DYGALITGGNISEEYAYDDYSL-EEFNKELF 144

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             + +  N II +N+ V    + RE+A+       L  +    + ++ +    G      
Sbjct: 145 LDVVEKANQIIKRNIEVKVYWLPREEALKIPGIVKLAKRMPPNIDMLRIVEIPGVD--IQ 202

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             GG HV +TGEI  +  +   +     +R+    
Sbjct: 203 ADGGPHVKNTGEIGEIVPLKIVNKGRKRKRLYYTV 237


>gi|167044146|gb|ABZ08829.1| putative DHHA1 domain protein [uncultured marine crenarchaeote
           HF4000_APKG5C13]
          Length = 140

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               K   +I   +       A  +A++ ++VL GG GGG    AQ GG + +K + AI 
Sbjct: 73  EDGDKIRAIIYSGDQAAKDKKAGYIAKIVSEVL-GGAGGGNQRFAQGGGKDKSKKNDAIE 131

Query: 891 GVASFL 896
            V + +
Sbjct: 132 KVKAMV 137


>gi|302408471|ref|XP_003002070.1| alanyl-tRNA synthetase domain-containing protein [Verticillium
           albo-atrum VaMs.102]
 gi|261358991|gb|EEY21419.1| alanyl-tRNA synthetase domain-containing protein [Verticillium
           albo-atrum VaMs.102]
          Length = 411

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 74/257 (28%), Gaps = 11/257 (4%)

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D+G  I               +   +         L     +  T+D+  R      H
Sbjct: 62  PSDSGTLIPLDDEAAEPIPIDFVQRQGLQCIYHSPRPLAPGTRVRQTVDFDRRWDHMQQH 121

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +  HLL   +           G     +    D+   +  +  E+++I+D  N+II  ++
Sbjct: 122 TGQHLLSAVMDKCDNLETLGWGMGKPGEANYVDL--PQKPSPEEIQAIQDRCNEIIRDSM 179

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           P+   +                 K    VRV+ +   D              +    ++ 
Sbjct: 180 PITVDVPQNAKDDT---LPDDYDKTKGVVRVIHIGDVDSNTCWRHSSWPRRHT----LLS 232

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV--SQGNVVGRVEEIWE 765
             + S   +     R+    G RA          L S+   L    +   V+     + +
Sbjct: 233 WLLHSTQPVHVKHCRLFFTAGDRAIKLAANSIAALTSVGKVLSCGGTPDQVIASTTRLRD 292

Query: 766 EYRKLQLIHAKRKLQLN 782
              +L+    +   +L 
Sbjct: 293 VGAELRSKEKRLLSELA 309


>gi|56067689|gb|AAV70312.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 130

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVH 556
               VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +         +V      G +V 
Sbjct: 1   NNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRGGYVL 60

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           H  V  G LR    +   +D   R+    NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 61  HIGVVEGTLRVGDEVHCHMDVMRRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 120

Query: 617 LRFDVTHSKP 626
           LRFD T+   
Sbjct: 121 LRFDFTNKSA 130


>gi|319783367|ref|YP_004142843.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169255|gb|ADV12793.1| Alanyl-tRNA synthetase, class IIc-like protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 247

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 17/245 (6%)

Query: 494 AIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
           A+ +    +  A +       +  ++ D+T FYA +GGQ GDTGC               
Sbjct: 7   ALFRDDAYLRTADATIVAVNDRGGIILDRTIFYATSGGQPGDTGCLERADGSRIAIAATL 66

Query: 549 KAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             E     +H    E+ + +   ++ L ID++ R  L   H+A HLL       +     
Sbjct: 67  TGETKDEIIHVPAPEQAVPQVGETVRLAIDWERRHLLMRMHAACHLL------TVVCPFP 120

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G+ ++ D  R D        + E   I   + +++  + P+  R+++ E+  A+    
Sbjct: 121 ITGAAVSEDDSRVDFDAPDAGFTKE--DITAGLMELVRADHPIFVRLISDEELAANPGLV 178

Query: 667 LLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                       ++  V   D     S  CGGTHV STGE+  ++I          RR  
Sbjct: 179 KSKNVRPPAGTGKIRLVCIGDNASVDSQPCGGTHVKSTGEVGEIHIGKIEKKGRENRRFR 238

Query: 725 AITGQ 729
              G 
Sbjct: 239 IRFGP 243


>gi|260577397|ref|ZP_05845366.1| Threonyl/alanyl tRNA synthetase SAD [Rhodobacter sp. SW2]
 gi|259020400|gb|EEW23727.1| Threonyl/alanyl tRNA synthetase SAD [Rhodobacter sp. SW2]
          Length = 239

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 83/217 (38%), Gaps = 11/217 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V D + FYA  GGQ GD+G     G RL I    K               +     
Sbjct: 25  EGGIVLDASIFYATGGGQPGDSGLLRWPGGRLTIATAIKAEGDHIALVPAEPLALPPVGT 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++  +D+  R +    H+A HLL       +   +   G  I  D  R D    +P   
Sbjct: 85  VVMQHLDWTRRYRHMRVHTALHLLS------VVIPLPVTGGQIGADRGRLDFDMPEP--P 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA--ALLGTKYNDRVRVVSVEYEDGG 687
            ++ +++  +N +I ++LPV    +   +  A+      L       + RV  +    GG
Sbjct: 137 EDIAALDAALNALIDRDLPVTESWITDAELAANPGLVKTLSVMPPVGQGRVRLIGIGQGG 196

Query: 688 VH-SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  CGGTHV+ T EI  + I          RR+
Sbjct: 197 ARIDLQPCGGTHVARTAEIGRVEIGRIEKKGRQNRRV 233


>gi|296536252|ref|ZP_06898368.1| alanyl-tRNA synthetase AlaS [Roseomonas cervicalis ATCC 49957]
 gi|296263406|gb|EFH09915.1| alanyl-tRNA synthetase AlaS [Roseomonas cervicalis ATCC 49957]
          Length = 238

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 86/221 (38%), Gaps = 8/221 (3%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             +G +  VV D+TPFYA+AGGQ GDTG    +G  + + +  K   G  +H    E  +
Sbjct: 20  LSAGPEG-VVLDRTPFYAQAGGQPGDTGVLAWEGGAMPVANAVKGEAGAVLHVPAPEAAL 78

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 +   +D+  R +L   H++ HLL   +           G  I  +  R D   +
Sbjct: 79  PSVGARVTARLDWARRHRLMRMHTSLHLLCSLI-----PGAGVTGGQIGVEKSRLDFDLA 133

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEY 683
           +P T   L      +                 +   +     ++   +   +VR+V +  
Sbjct: 134 EPPTKEWLSERLTALAAADHAVTERWISDAELDANPSLVRTLSVQPPRGGGQVRLVRIGA 193

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           E+        CGGTHV  TGEI  + +    +     RR+ 
Sbjct: 194 EEA-PVDLQPCGGTHVRQTGEIGAITVTKLENKGRQNRRVY 233


>gi|269986162|gb|EEZ92475.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 215

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 56/131 (42%)

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           V   ++       +    CGG H +STGE+ L+ I+    I+ G+ RI     + A  ++
Sbjct: 27  VPNANIRIVKIDDYDVEACGGLHCNSTGEVGLIKIIKTERIQDGVVRIVFKAYKPALEYI 86

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              D+  K L +   VSQ ++    +  + E +  +    +  ++     L   +    N
Sbjct: 87  ENLDKLAKDLTALWGVSQEDIYATAKRFFSEAKYYKEAKEEGDIEFIRSQLGLTQPNKEN 146

Query: 796 FMSHIISEVDS 806
            ++ + ++ ++
Sbjct: 147 GITILYTKSNN 157


>gi|56067691|gb|AAV70313.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 130

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVH 556
               VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +         +V      G +V 
Sbjct: 1   NNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRGGYVL 60

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           H  V  G LR    +   +D   R+    NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 61  HIGVVEGTLRVGDEVHCHMDVVRRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 120

Query: 617 LRFDVTHSKP 626
           LRFD T+   
Sbjct: 121 LRFDFTNKSA 130


>gi|56067693|gb|AAV70314.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067695|gb|AAV70315.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 144

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 1/144 (0%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           + D G  +         +V      G +V H  V  G LR    +   +D   R+    N
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLVYNRGGYVLHIGVVEGTLRVGDEVHCHMDVVRRQLTMKN 120

Query: 587 HSATHLLHHALSTILGSHVSQNGS 610
           HSATH L+H+L  +LG    Q GS
Sbjct: 121 HSATHALNHSLLKVLGQDTDQRGS 144


>gi|168033647|ref|XP_001769326.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679432|gb|EDQ65880.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 222

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 78/215 (36%), Gaps = 35/215 (16%)

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHL---------------MG 737
           GTH+S+  E   L +VSE  I  G RR+ A T     +A   +                 
Sbjct: 1   GTHLSNINEAEALAMVSEKRIAKGGRRVTAFTMHTECQAIHQILVFSAQIDDANKMQGAA 60

Query: 738 QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
             +++ +L + L+        +    GR  E+ E  ++ Q       LQL + +      
Sbjct: 61  LKKEVSALKNLLETAILPAAKKAEFRGRFSELQEGIKQAQKSAGAASLQLKLNE--AVTS 118

Query: 792 ADVNF-------MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVT 843
           ADV         +  I   +D+  ++     + +K +   +ML  + ++  K  +   V 
Sbjct: 119 ADVAVALCQEYCVLRIDDGLDANAVREAASLVIEKHKYLAVMLFSVDEQRNKVLICAFVP 178

Query: 844 EDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                    A+D  + S   + G G      +AQ 
Sbjct: 179 NSAAKQGLGALDWLQGSLVPINGTGNSDNDGLAQG 213


>gi|327193146|gb|EGE60056.1| alanyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 319

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 82/269 (30%), Gaps = 21/269 (7%)

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                +       V          +   ++V AI   G             +  DQT FY
Sbjct: 64  HTCSLRTRVRPMPVNALYRDDFYLSTCEAVVTAIHDDG------------GIELDQTCFY 111

Query: 522 AEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           A +GGQ GDTG                   ++ I +H  +          +LVL +D+  
Sbjct: 112 AASGGQPGDTGQLERADGSKIALGQTKHGASKDIIIHVPLENEPQPEIGETLVLHVDWPR 171

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R +L   H+A HLL       +       G+ +  +  R D   S+ I   E+ +    +
Sbjct: 172 RYRLMRMHTACHLLS------VVCSYPITGAAVGEEESRIDFDMSETIDKDEVTARLMEL 225

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
                                    +  +        RV  V         S  CGGTHV
Sbjct: 226 VGQNHPVYLQWITDDELAANPDIVKSKNVRPPMGLG-RVSLVCIGKNSSIDSQPCGGTHV 284

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           S T E+  ++I          RR     G
Sbjct: 285 SETQEVGQIHIAKIEKKGKENRRFRIRFG 313


>gi|300711786|ref|YP_003737600.1| Alanyl-tRNA synthetase, class IIc-like protein [Halalkalicoccus
           jeotgali B3]
 gi|299125469|gb|ADJ15808.1| Alanyl-tRNA synthetase, class IIc-like protein [Halalkalicoccus
           jeotgali B3]
          Length = 255

 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 23/237 (9%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
              G    VV D T FY E GGQ  D G   G          +       ++H +   G 
Sbjct: 23  IDDGDAARVVLDATHFYPEGGGQPADRGALSGSENWPVRDVRKTDE----IYHTVEGEGP 78

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 +V  ID ++R      H+A HLL   L  +        G+ +  D  R D    
Sbjct: 79  -TVGERVVGEIDREHRAAHMQYHTAQHLLSAVL--LEEYDAPTTGNQLYADHARLDCA-Y 134

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVT----RIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +  T  +L ++E  +N+++   + V      R   + +         L  +    +R+V 
Sbjct: 135 ERFTDEDLDALETRMNELVGAAMDVRWYTLGRERAQTELDPERTRLDLLPESITEIRIVE 194

Query: 681 VEYEDGGVHSSAL-----------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           +    G   +              C GTHVS+T EI  + +    +  +   R+E +
Sbjct: 195 IGDGIGSTPNGEPSGPSTVFDRVACAGTHVSNTAEIGRVEVTGRRTQGSDEERVEFV 251


>gi|119720099|ref|YP_920594.1| threonyl/alanyl tRNA synthetase, SAD [Thermofilum pendens Hrk 5]
 gi|119525219|gb|ABL78591.1| Predicted alanyl-tRNA synthetase-like metal-dependent hydrolase
           [Thermofilum pendens Hrk 5]
          Length = 252

 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 11/220 (5%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E + G K  V  D+T F+   GGQ  D G  +       +    +    I      +E G
Sbjct: 36  ELLKGSKAYVELDRTIFHPLGGGQPSDEGSIVSPRGAFAVKKAIRDRGRIRH-WGRIEAG 94

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L    ++   ++++ R  +   H+A H+L +A+  + G  V    +   P       + 
Sbjct: 95  SLEVGDTVRCELNWEKRYLVMRLHTAGHILDYAMLRLYGRLVETLDAFHGPPEAYLVYSV 154

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS--GAAALLGTKYNDRVRVVSV 681
           S+P  +     +E+  N ++ + L V  + + R +  A    A  +     ++  RVV +
Sbjct: 155 SEPPDA---YRLEEEANKVVERGLSVAVKFVPRGELQAHIYNAPNVSRLPPSEEYRVVEI 211

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              +        C GTHVS+T E+  + ++       G++
Sbjct: 212 PGVNAM-----PCTGTHVSNTREVGRIKVLGVEREVVGVK 246


>gi|328543630|ref|YP_004303739.1| Alanyl-transfer RNA synthetase domain protein [Polymorphum gilvum
           SL003B-26A1]
 gi|326413374|gb|ADZ70437.1| Alanyl-transfer RNA synthetase domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 238

 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 75/221 (33%), Gaps = 10/221 (4%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVER 562
                +  +V D+T FYA  GGQ GD+G    +        T V        VH      
Sbjct: 20  IGVNDRGGIVLDRTVFYASGGGQPGDSGYLEREDGSRIAITTTVYDNDRTTIVHVPADGE 79

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +     ++V  +D+  R +L   H+A HLL   L           G  I     R D  
Sbjct: 80  AMPAPGETVVAHLDWARRYRLMRMHTALHLLSVVLPY------PVTGGQIGDPEGRLDFD 133

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
             +     +  ++   +N + A +  V T  +   +  A+       +    R       
Sbjct: 134 IPEA--DFDRDALTARLNALAAGDHAVTTEWITDAELDANPGLVKTMSVKPPRGSGRVRL 191

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              G       CGGTHVS T EI  L I          RR+
Sbjct: 192 VRIGTDVDLQPCGGTHVSRTSEIGPLSIGKIEKKGRQNRRV 232


>gi|305663927|ref|YP_003860215.1| Ala-tRNA(Pro) hydrolase [Ignisphaera aggregans DSM 17230]
 gi|304378496|gb|ADM28335.1| Ala-tRNA(Pro) hydrolase [Ignisphaera aggregans DSM 17230]
          Length = 239

 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 6/229 (2%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHA 558
           E   + V   +  +V ++T FY + GG   DTG    GD     +     K  G  VH  
Sbjct: 14  EFNAKVVKINQNIIVLNRTAFYPKTGGLESDTGYIVKGDKKYRVVQVRIDKESGDVVHEL 73

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 ++    ++  +D+  R +L   H+A H+L   +     + ++  G  I P+   
Sbjct: 74  ESSPIDIKEGDEVMGILDWDRRYRLMRLHTAAHILSAIMYRDYNALIT--GGNIYPEYAY 131

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D +  +       +      N+I+ +NL V    + R++A+       L ++    V  
Sbjct: 132 DDYSI-EVFDRKIFEDAIAKANEIVKKNLEVKIYWLERDEAMKIPGIVKLASRLPPNVEK 190

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           + +    G        GG HV +T EI  +  +   +     +R+    
Sbjct: 191 LRIVEIPGVD--IQADGGPHVRNTQEIGEIVFIKAENKGRNRKRLYYTV 237


>gi|15920346|ref|NP_376015.1| alanyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|15621128|dbj|BAB65124.1| 207aa long hypothetical alanyl-tRNA synthetase [Sulfolobus tokodaii
           str. 7]
          Length = 207

 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 10/215 (4%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +  D+T FY   GG   D G  I +G ++++ +V++    I      V     +    + 
Sbjct: 1   MFLDKTAFYPGGGGVENDKGYFIFNGNKIEVNNVKEIDGEIAHEATSV---PFKEGDEIT 57

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID++ R ++   H+A+H++     +   S ++  G  I+P+  + D          +L
Sbjct: 58  GVIDWERRYRMMRLHTASHIIAAIAYSKYNSKIT--GGNISPEYAKDDFDI---DDKNKL 112

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             I    N+I  + +PV    + +E+A+       L  +    + +  +   +G      
Sbjct: 113 LEIVKEANEIAKKGIPVKIYFLKKEEALKIPGIVKLAERMPPNIDIWRIVEIEG--IDIQ 170

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             GG HVS+T EI  +  +   +   G +RI    
Sbjct: 171 ADGGPHVSNTLEIGEIVPLKIENRGKGKKRIYYTV 205


>gi|190891467|ref|YP_001978009.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
 gi|190696746|gb|ACE90831.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 245

 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 81/256 (31%), Gaps = 21/256 (8%)

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           V          +   ++V AI   G             +  DQT FYA +GGQ GDTG  
Sbjct: 3   VNALYRDDFYLSTCEAVVTAIHDDG------------GIELDQTCFYATSGGQPGDTGQL 50

Query: 535 IGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                            ++ I +H  +          +LVL +D+  R +L   H+A HL
Sbjct: 51  ERADGSKIALGQTKHGASKDIIIHVPLENEPQPEIGETLVLHVDWPRRYRLMRMHTACHL 110

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L       +       G+ +  +  R D   S+ I   E+ +    +             
Sbjct: 111 LS------VICSYPITGAAVGEEESRIDFDMSETIDKDEVTARLMELVGQNHPVYLQWIT 164

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                       +  +        RV  V         S  CGGTHVS T E+  ++I  
Sbjct: 165 DDELAANPDIVKSKNVRPPMGLG-RVSLVCIGKNSSIDSQPCGGTHVSETQEVGQVHIAK 223

Query: 713 ESSIRAGIRRIEAITG 728
                   RR     G
Sbjct: 224 IEKKGKENRRFRIRFG 239


>gi|218463377|ref|ZP_03503468.1| alanyl-tRNA synthetase protein [Rhizobium etli Kim 5]
          Length = 245

 Score = 67.9 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 81/244 (33%), Gaps = 14/244 (5%)

Query: 492 VKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQIT 544
           V A+ +    +    +          +  DQT FYA +GGQ GDTG          +   
Sbjct: 3   VNALYRDDFYLSTCEAVVTAVHDDGGIELDQTCFYAASGGQPGDTGQLERADGSKIVLGQ 62

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
                ++ I +H  +          +LVL +D+  R +L   H+A HLL       +   
Sbjct: 63  TKHGASKDIIIHVPLDNEPQPEIGETLVLHVDWPRRYRLMRMHTACHLLS------VICS 116

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G+ +  +  R D   S+ I   E+ +    +                         
Sbjct: 117 YPITGAAVGEEESRIDFDMSETIDKDEVTARLMELVGQNHPVYLQWITDDELAANPDIVK 176

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +  +        RV  V   +     S  CGGTHVS T E+  ++I          RR  
Sbjct: 177 SKNVRPPIGLG-RVSLVCIGENSSIDSQPCGGTHVSETQEVGQIHIAKIEKKGKENRRFR 235

Query: 725 AITG 728
              G
Sbjct: 236 IRFG 239


>gi|153009471|ref|YP_001370686.1| threonyl/alanyl tRNA synthetase SAD [Ochrobactrum anthropi ATCC
           49188]
 gi|151561359|gb|ABS14857.1| Threonyl/alanyl tRNA synthetase SAD [Ochrobactrum anthropi ATCC
           49188]
          Length = 247

 Score = 67.9 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 84/259 (32%), Gaps = 20/259 (7%)

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +           +     V AI             +   ++ DQT FYA +GGQ GD G
Sbjct: 3   YETEALFREDSYLSTAEGTVLAIT------------ETGGIILDQTNFYATSGGQPGDIG 50

Query: 533 CAIGDGIRLQITDVQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                             E     +H     +        LVL +D+  R +L   H+A 
Sbjct: 51  FLERADGSRIEISATVTGENKNEIIHVPAEGQASPTVGEKLVLHLDWPRRYKLMRMHTAC 110

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL      +    ++          + FD+           + + + VN   A  +  +
Sbjct: 111 HLLSV----VCPFSITGAAVGEDESRVDFDLPDPSYTKEFVTERLMERVNANDAVAIRWI 166

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           +      +     +  +       R+R+V +     GV  S  CGGTHVS T E+  ++I
Sbjct: 167 SDEEFLANPDIVKSKNVRPPVGLGRIRLVLIGE--NGVVDSQPCGGTHVSETQEVGEIHI 224

Query: 711 VSESSIRAGIRRIEAITGQ 729
                     RR     G 
Sbjct: 225 GKIEKKGKENRRFRIRFGP 243


>gi|325292579|ref|YP_004278443.1| alanyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325060432|gb|ADY64123.1| alanyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 245

 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 87/246 (35%), Gaps = 18/246 (7%)

Query: 492 VKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
           V A+ +    +  A +      +   +  DQT FYA +GGQ GD+G              
Sbjct: 3   VNALFRDDFYLSTAEAIVTAVHEDGGIELDQTCFYATSGGQPGDSGFLERADGSRIELGT 62

Query: 547 QKKAEG--IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
            K      + +H  +  +        L L +D+  R +L   H+A HLL           
Sbjct: 63  TKNGSDKSVIIHVPLEGQPSPEVGEKLTLHVDWPRRYKLMRMHTACHLLSVVCQW----- 117

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G+ +  D  R D   S+ I   E+ +    +   +  N PV  + +  E+  A+  
Sbjct: 118 -PITGAAVGEDESRVDFDMSETIDKDEVTAKLMEL---VKANHPVFLQWITDEELQANPG 173

Query: 665 AALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                         RV  V   +     S  CGGTHVS T E+  ++I          RR
Sbjct: 174 IVKSKNVRPPIGLGRVSLVCIGENSTIDSQPCGGTHVSETQEVGDIHIAKIEKKGKENRR 233

Query: 723 IEAITG 728
                G
Sbjct: 234 FRIRFG 239


>gi|292655029|ref|YP_003534926.1| alanyl-tRNA synthetase-like protein [Haloferax volcanii DS2]
 gi|291371865|gb|ADE04092.1| alanyl-tRNA synthetase homolog [Haloferax volcanii DS2]
          Length = 244

 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 87/220 (39%), Gaps = 11/220 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           VV D+T FY E GGQ  DTG     G+G   +  DV    +   + H +          +
Sbjct: 28  VVLDRTYFYPEGGGQPHDTGTLSVDGEGCDGETWDVTDVQKRDRIEHVVAGDAPD-PGAT 86

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +D   RR  S  H+A HLL   L  +        G+ +  D    D          
Sbjct: 87  VTGRVDPARRRAHSRYHTAQHLLSAVL--LDEFDAETTGNQLYADHAHLDCA-YDRFDGD 143

Query: 631 ELKSIEDNVNDIIAQNLPVVT----RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +L++IE  +ND++A +LPV      R               L  +    VR+V +   D 
Sbjct: 144 DLRTIETRLNDLVASDLPVRWYSLDREEAEATLDPDRTRLHLLPESIREVRIVEIGDADD 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                  C GTHV STG+I  + I   ++  +   R+  +
Sbjct: 204 -PFDRTACAGTHVESTGDIGTVSIAGRTTQGSAHERVNFV 242


>gi|260459528|ref|ZP_05807783.1| Threonyl/alanyl tRNA synthetase SAD [Mesorhizobium opportunistum
           WSM2075]
 gi|259035082|gb|EEW36338.1| Threonyl/alanyl tRNA synthetase SAD [Mesorhizobium opportunistum
           WSM2075]
          Length = 247

 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 91/245 (37%), Gaps = 17/245 (6%)

Query: 494 AIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
           A+ +    ++ A +       +  V+ D+T FYA +GGQ GD+G                
Sbjct: 7   ALFRDDAYLKTADATVVAVNDRGGVILDRTIFYATSGGQPGDSGALERADGSRIEIAATI 66

Query: 549 KAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             E     VH     +  L     + L ID++ R  L   H+A HLL       +     
Sbjct: 67  TGETKDEIVHVQAPAQAALVVGEKVKLAIDWERRHLLMRMHAACHLL------TVVCPFP 120

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G+ ++ D  R D        + E  +      D++  + P+ TR+++ E+  A+    
Sbjct: 121 ITGASVSEDDSRVDFDIPDASFTREEVTAGLM--DLVRADHPIFTRLISDEELAANPGLV 178

Query: 667 LLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                       R+  V   +     S  CGGTHV STGE+  ++I          RR  
Sbjct: 179 KSKNVRPPVGTGRIRLVCIGENASVDSQPCGGTHVKSTGEVGEIHIGKIEKKGRENRRFR 238

Query: 725 AITGQ 729
              G 
Sbjct: 239 IRFGP 243


>gi|119872544|ref|YP_930551.1| threonyl/alanyl tRNA synthetase, SAD [Pyrobaculum islandicum DSM
           4184]
 gi|119673952|gb|ABL88208.1| Ala-tRNA(Pro) hydrolase [Pyrobaculum islandicum DSM 4184]
          Length = 238

 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 5/228 (2%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     +     EV+ D+T F+   GG   D+G  I    +       K  E + +    
Sbjct: 15  EFEASVLEVIGNEVILDKTAFHDGTGGLQADSGFIIYRSEKYSTVASHKGGEVVHILDRA 74

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +   +D++ R +    H+A H+L   L     + ++            F
Sbjct: 75  PAFKP---GDVVTGILDWEKRYRKMRLHTAAHILSAVLYKRYNALITGGDITPEYARDDF 131

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           ++           +      N+I  + + V    + RE+A+       L  K    +  +
Sbjct: 132 NIEGDMATVRKAFEEAVAEANEIAQRGIEVKIYWLPREEALKIPGVVKLAEKMPPDIPQL 191

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            +    G        GG HV +T EI  + I+   +   G +R+    
Sbjct: 192 RIVEIPGVD--LQADGGPHVRNTREIGTIKILKVENRGKGKKRLYYTV 237


>gi|159044856|ref|YP_001533650.1| aminoacyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|157912616|gb|ABV94049.1| aminoacyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
          Length = 239

 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 13/218 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V DQT FYA  GGQ GD G    DG  ++I    K   G   H       +     
Sbjct: 25  EGGIVTDQTVFYATGGGQPGDAGRIAWDGGEIEIATAVKLDTGAIAHVPAEAASLPHVGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            L L++D+  R +    H+A HLL       +   +   G  ++    R D         
Sbjct: 85  GLRLSLDWARRHRHMRIHTALHLLS------VVIPLPVTGGAVSAQKGRLDFDMPDA--P 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYED 685
            +  ++E  +  +I ++LPV    +   + +A        A+     + +VR+V +    
Sbjct: 137 EDRDALEAQLATLIERDLPVADEWITEAELLAKPELVKTMAVKPPLVSGQVRLVRIGEG- 195

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                   CGGTHV+ TGEI  + +          RR+
Sbjct: 196 AETVDLQPCGGTHVARTGEIGRVVLGKIEKKGRQNRRV 233


>gi|126461592|ref|YP_001042706.1| threonyl/alanyl tRNA synthetase, SAD [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103256|gb|ABN75934.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides ATCC 17029]
          Length = 239

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 5/215 (2%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  ++ D++ FYA  GGQ GD+G    +G R+ +    K   G           +     
Sbjct: 25  EGGILVDRSIFYATGGGQPGDSGFLDWEGGRIDVATAVKADGGRIALVPAEAGPLPPEGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           S+  T+D++ R +    H+A HLL      ++   V+          L FD+       +
Sbjct: 85  SVRQTLDWERRHRHMRVHTALHLLSV----VIPLPVTGGQIGAERGRLDFDMPEPPADPA 140

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           A    +   +   +A     +T      D       +++      RVR+V +  +     
Sbjct: 141 ALEAELNALIARDLAVTEDWITDEELLADPSIVKTMSVMPPTGQGRVRLVRI-GQGAEQV 199

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
               CGGTHV+ TGEI  + +          RR+ 
Sbjct: 200 DLQPCGGTHVARTGEIGRVLLGKIEKKGRQNRRVT 234


>gi|89054486|ref|YP_509937.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Jannaschia sp. CCS1]
 gi|88864035|gb|ABD54912.1| Ala-tRNA(Pro) hydrolase [Jannaschia sp. CCS1]
          Length = 246

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 87/231 (37%), Gaps = 21/231 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI------FVHHAIVER 562
           ++  V+ D+T FYA  GGQ GD+G    DG RL I    K    +       V       
Sbjct: 25  EEGGVILDRTIFYARGGGQPGDSGALTWDGHRLPIATAVKGPIPVEGAGGAIVLIPAEPA 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +      +   +D+  R      H+A HLL       +   +   G  +  D  R D  
Sbjct: 85  PLPPVGAEVEQQLDWDRRLGHMRIHTALHLLS------VVIPLPVTGGAVAADKGRLDFL 138

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA----ALLGTKYNDRVRV 678
             +P    +   +E  +N +I ++LPV    +      A+       ++        +R+
Sbjct: 139 MPQP--PEDKMILEGQLNALITRDLPVSVEWITESQLNANPNLVKTLSVQPPSGAGEIRL 196

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR--IEAIT 727
           V +   +        CGGTHV+ T EI  L I    +     RR  IE  +
Sbjct: 197 VRIGD-EAAPVDLQPCGGTHVARTSEIGKLAITKVENKGKQNRRVTIEFAS 246


>gi|15888552|ref|NP_354233.1| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|15156264|gb|AAK87018.1| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 245

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 89/246 (36%), Gaps = 18/246 (7%)

Query: 492 VKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
           V A+ +    +  A +      +   +  DQT FYA +GGQ GD+G             V
Sbjct: 3   VNALFRDDFYLSTAEAIVTAVHEDGGIELDQTCFYATSGGQPGDSGFLERADGSRIELGV 62

Query: 547 QKKAEG--IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
            K      + VH  +  +        L L +D+  R +L   H+A HLL           
Sbjct: 63  TKNGADKSVIVHVPLEGQPSPEIGEKLTLHVDWPRRYKLMRMHTACHLLSVVCQW----- 117

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G+ +  D  R D   S+ I   E+ +    +   +  N PV  + ++ E+  A+  
Sbjct: 118 -PITGAAVGEDESRVDFDMSETIEKDEVTAKLMEL---VKANHPVFLQWISDEELQANPG 173

Query: 665 AALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                         RV  V   +     S  CGGTHVS T E+  ++I          RR
Sbjct: 174 IVKSKNVRPPMGLGRVSLVCIGENSSIDSQPCGGTHVSETQEVGDIHIAKIEKKGKENRR 233

Query: 723 IEAITG 728
                G
Sbjct: 234 FRIRFG 239


>gi|218662981|ref|ZP_03518911.1| alanyl-tRNA synthetase protein [Rhizobium etli IE4771]
          Length = 245

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 80/244 (32%), Gaps = 14/244 (5%)

Query: 492 VKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQIT 544
           V A+ +    +    +          +  DQT FYA +GGQ GDTG              
Sbjct: 3   VNALYRDDFYLSTCEAVVTAVHDDGGIELDQTCFYAASGGQPGDTGQLERADGSKIALGQ 62

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
                ++ I +H  +          +LVL +D+  R +L   H+A HLL       +   
Sbjct: 63  TKHGASKDIIIHVPLDNEPQPEIGETLVLHVDWPRRYRLMRMHTACHLLS------VICS 116

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G+ +  +  R D   S+ I   E+ +    +                         
Sbjct: 117 YPITGAAVGEEESRIDFDMSETIDKDEVTARLMELIGQNHPVYLQWITDDELAANPDIVK 176

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +  +        RV  V   +     S  CGGTHVS T E+  ++I          RR  
Sbjct: 177 SKNVRPPIGLG-RVSLVCIGENSSIDSQPCGGTHVSETQEVGQIHIAKIEKKGKENRRFR 235

Query: 725 AITG 728
              G
Sbjct: 236 IRFG 239


>gi|330833973|ref|YP_004408701.1| Ala-tRNA(Pro) hydrolase [Metallosphaera cuprina Ar-4]
 gi|329566112|gb|AEB94217.1| Ala-tRNA(Pro) hydrolase [Metallosphaera cuprina Ar-4]
          Length = 237

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +IV+    G    VV D+T F+ + GG   D G  I      +    + K EG  + H +
Sbjct: 19  KIVKVVDKG----VVLDRTAFHPKGGGLESDNGILISKSTGKEFVVTETKKEGENIVHFL 74

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                +     +V  I++  R ++   H+A+H++     +  GS+++  G  ITP+  + 
Sbjct: 75  ENPIQIEEGEVVVGRINWDRRYRMMRLHTASHIISSIAFSKYGSYIT--GGNITPEYAKD 132

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D         + L  I    N+I      V    ++RE+A+       L  K    V + 
Sbjct: 133 DFDI---EDKSLLVDIVKEANEIARSGRNVKVFFLSREEALKIPGIVKLAEKMPPEVNIW 189

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            +   +G        GG HV++T EI  + I+   +     +R+    
Sbjct: 190 RIVEIEG--IDIQADGGPHVNNTSEIGDIEILKVENRGKSKKRLYYTV 235


>gi|77462699|ref|YP_352203.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides 2.4.1]
 gi|77387117|gb|ABA78302.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides 2.4.1]
          Length = 239

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 5/214 (2%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  ++ D++ FYA  GGQ GD+G    DG R+ +    K   G           +     
Sbjct: 25  EGGILVDRSIFYATGGGQPGDSGFLDWDGGRIDVATAVKADGGRIALVPAEAGPLPPEGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           S+  T+D++ R +    H+A HLL      ++   V+          L FD+       +
Sbjct: 85  SVRQTLDWERRHRHMRVHTALHLLSV----VIPLPVTGGQIGAERGRLDFDMPEPPADPA 140

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           A    +   +   +A     +T      D       +++      RVR+V +  +     
Sbjct: 141 ALEAELNALIARDLAVTEDWITDEELLADPSIVKTMSVMPPTGQGRVRLVRI-GQGAEQV 199

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               CGGTHV+ TGEI  + +V         RR+
Sbjct: 200 DLQPCGGTHVARTGEIGRVLLVKIEKKGRQNRRV 233


>gi|148559488|ref|YP_001258988.1| hypothetical protein BOV_1019 [Brucella ovis ATCC 25840]
 gi|148370745|gb|ABQ60724.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
          Length = 247

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 91/260 (35%), Gaps = 24/260 (9%)

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +           +     V AI   G             ++ D+T FYA +GGQ GDTG
Sbjct: 3   YETEALFHEDSYLSTAEGTVLAIAGNG------------GIILDRTNFYATSGGQPGDTG 50

Query: 533 CAIGDGIRLQITDVQKKAE--GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                             E     VH     + +      LVL ID+Q R +L   H+A 
Sbjct: 51  FFERADGSRIEIATTVTGETKNEIVHMPAQGQQMPDVGEKLVLHIDWQRRYKLMRMHTAC 110

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL       +       G+ +  D  R D        S   +S+ + + +++  N PV 
Sbjct: 111 HLLS------VACPFPITGAAVGEDESRVDFNLPDQ--SYTKESVTEKLMELVQANAPVS 162

Query: 651 TRIMNREDAIASGAAALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              ++ E+ +A+                R+  V   + G   S  CGGTHVS T E+  +
Sbjct: 163 IHWISDEEFLANPDIVKSKNVRPPVGLGRIRLVAIGENGSVDSQPCGGTHVSETQEVGEI 222

Query: 709 YIVSESSIRAGIRRIEAITG 728
           +I          RR     G
Sbjct: 223 HIGKIEKKGKENRRFRIRFG 242


>gi|327310448|ref|YP_004337345.1| Threonyl/alanyl tRNA synthetase, SAD [Thermoproteus uzoniensis
           768-20]
 gi|326946927|gb|AEA12033.1| Threonyl/alanyl tRNA synthetase, SAD [Thermoproteus uzoniensis
           768-20]
          Length = 232

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 84/217 (38%), Gaps = 9/217 (4%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+T F+   GG   DTG     G R ++   ++  E + V               + 
Sbjct: 23  VVLDRTAFHDGEGGVQADTGYLEAAGARYRVKAGREGDEVVHVVEGQHSLKP---GDVVK 79

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT--SA 630
             +D++ R +    H+A H+L   L     + ++  G  ITP+  R D +    +     
Sbjct: 80  GVLDWEPRYRKMRLHTAAHMLSAVLYRKHNALIT--GGEITPEYARDDFSIEGDMNTVRR 137

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
             +     VN++ A+ + V    + RE+A+       L  +    + V+ +    G    
Sbjct: 138 AFEEAVAEVNELAARGIEVKVYWLPREEALKIPGITKLAERAPPNIPVLRIVEIPGVD-- 195

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
               GG HV +T EI  + I+   +     +RI    
Sbjct: 196 VQADGGPHVRNTAEIGQVKILKIENRGRNKKRIYYTV 232


>gi|221638559|ref|YP_002524821.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides KD131]
 gi|221159340|gb|ACM00320.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides KD131]
          Length = 239

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 82/214 (38%), Gaps = 5/214 (2%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  ++ D++ FYA  GGQ GD+G    +G R+ +    K   G           +     
Sbjct: 25  EGGILVDRSIFYATGGGQPGDSGFLDWEGGRIDVATAVKADGGRIALVPAEAGPLPPEGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           S+  T+D++ R +    H+A HLL      ++   V+          L FD+       +
Sbjct: 85  SVRQTLDWERRHRHMRVHTALHLLSV----VIPLPVTGGQIGAERGRLDFDMPEPPADPA 140

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           A    +   +   +A     +T      D       +++      RVR+V +  +     
Sbjct: 141 ALEAELNALIARDLAVTEDWITDEELLADPSIVKTMSVMPPTGQGRVRLVRI-GQGAEQV 199

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               CGGTHV+ TGEI  + +          RR+
Sbjct: 200 DLQPCGGTHVARTGEIGRVLLGKIEKKGRQNRRV 233


>gi|86357404|ref|YP_469296.1| alanyl-tRNA synthetase protein [Rhizobium etli CFN 42]
 gi|86281506|gb|ABC90569.1| alanyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 253

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 79/245 (32%), Gaps = 14/245 (5%)

Query: 491 IVKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQI 543
            V A+ +    +    +          +  +QT FYA +GGQ GDTG             
Sbjct: 2   RVNALYRDDFYLSTCEAVVTAVHDDGGIELNQTCFYATSGGQPGDTGQLERADGTKIALG 61

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
                  + + +H  +          +LVL +D+  R +L   H+A HLL       +  
Sbjct: 62  QTKHGAGKDVIIHVPLENEPRPEVGETLVLHVDWPRRYRLMRMHTACHLLS------VIC 115

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
                G+ +  +  R D   S+ I   E+ +    +                        
Sbjct: 116 SYPITGAAVGEEESRVDFDMSETIDKDEVTAKLMELVGQNHPVYQQWITDDELAANPDIV 175

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +  +        RV  V   +     S  CGGTHVS T E+  ++I          RR 
Sbjct: 176 KSKNVR-PPVGLGRVSLVCIGENSSIDSQPCGGTHVSETQEVGQIHIAKIEKKGKENRRF 234

Query: 724 EAITG 728
               G
Sbjct: 235 RIRFG 239


>gi|83647732|ref|YP_436167.1| metal-dependent hydrolase [Hahella chejuensis KCTC 2396]
 gi|83635775|gb|ABC31742.1| predicted metal-dependent Hydrolase related to alanyl-tRNA
           synthetase HxxxH domain [Hahella chejuensis KCTC 2396]
          Length = 235

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 98/230 (42%), Gaps = 19/230 (8%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHH 557
            E + + V+ ++  V+ D+T FY   GGQ GDTG       R+ ++TD +K  +G  + H
Sbjct: 13  KECIAKVVAIKENSVLLDRTIFYPLGGGQPGDTGEFENQSARVWKVTDTRKDPDGEGILH 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +     L   M L L ID++ R      H+  HLL   +           G  I+ D  
Sbjct: 73  ILDRSEGLEEGMELALRIDWERRYAHMRMHTCLHLLCSLI------EAPVTGGNISVDKG 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA----ALLGTKYN 673
           R D              +E  +N ++A   PV  R +  E+  A        ++   K  
Sbjct: 127 RLDFYLDYSPDKD---GLESRINALVAAGHPVSYRWITDEELDAQPELVRTLSVQPPKGA 183

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +VR+VSV+  D        CGGTHV +T EI  + I    +   G RR+
Sbjct: 184 GKVRLVSVDGVD-----LQPCGGTHVKNTAEIGPVLIGKIENKGKGNRRV 228


>gi|254787772|ref|YP_003075201.1| alanine--tRNA ligase [Teredinibacter turnerae T7901]
 gi|237685363|gb|ACR12627.1| alanine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 242

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 84/226 (37%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAIV 560
             ++ ++   +FD+T FY   GGQ GDTG           +  T   ++           
Sbjct: 24  SLLAIKENFALFDKTIFYPLGGGQPGDTGTLEFPDGTSRNVTNTYRDREQTQQIWLELDT 83

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                   +S + T+++  R +    H+  HLL   +           G  I+ D  R D
Sbjct: 84  PLSEEHIGLSALQTLNWDRRYRHMQFHTCLHLLCALV------DAPVTGCNISEDKARLD 137

Query: 621 VTHSKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
               +P  + E   + +   +    A     +T      +     +A +    YN R+R+
Sbjct: 138 FDLPEPSVTKEGITEELNALIQKAAAVTPASITPEELASNTDLIKSADVAPPAYNGRIRL 197

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V +E  D     +  CGGTHV +T EI  +       +    RRIE
Sbjct: 198 VKIEGID-----TQPCGGTHVKTTSEINTVVCTKIKKVSKSNRRIE 238


>gi|13470598|ref|NP_102167.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|14021340|dbj|BAB47953.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
          Length = 248

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 87/226 (38%), Gaps = 12/226 (5%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI--FVHHAIVERGIL 565
             +  ++FD+T FYA +GGQ GDTG                  E     +H    ++  L
Sbjct: 27  NDRGGIIFDRTIFYATSGGQPGDTGHLERADGSRIAIAATITGETKDEIIHVPAPQQAAL 86

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L ID++ R  L   H+A HLL       +       G+ ++ D  R D     
Sbjct: 87  AVGEKVKLAIDWERRHLLMRMHAACHLL------TVVCPFPITGAAVSEDDSRVDFDIPD 140

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT--KYNDRVRVVSVEY 683
              S E  +      D++  N P+ TR+++ E+  A+                ++  V  
Sbjct: 141 ASFSKEEVTASLM--DLVRANHPIFTRLISDEELAANPGLVKSKNVRPPVGTGKIRLVCI 198

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            + G   S  CGGTHV STGEI  ++I          RR     G 
Sbjct: 199 GENGAVDSQPCGGTHVKSTGEIGEIHIGKIEKKGRENRRFRIRFGP 244


>gi|115390396|ref|XP_001212703.1| hypothetical protein ATEG_03525 [Aspergillus terreus NIH2624]
 gi|114195099|gb|EAU36799.1| hypothetical protein ATEG_03525 [Aspergillus terreus NIH2624]
          Length = 303

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 102/274 (37%), Gaps = 51/274 (18%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +    +T  +++ ++      I 
Sbjct: 1   MNHTGTHILNFALREVLGKDVKQKGSLVAPEKLRFDFSFKASLTEKDIERVQQISYKYIQ 60

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSA 692
            +  V    +   +     G  A+ G  Y D  RVVS+             +D   +S  
Sbjct: 61  DDQQVFVSDVALEKARQIEGVQAVSGETYPDPTRVVSIGVSVDTLVDNVSNKDWWNYSIE 120

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            CGGTHV +      + I+   ++    RR+E IT            E LK   + LKV 
Sbjct: 121 FCGGTHVQAELATTAVSILDRRALS---RRLEEIT-----------KEMLKEQKASLKVQ 166

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII-SEVDSKELKS 811
               +  VE                              A  +F+  +  ++  +K +  
Sbjct: 167 VDAALTLVE-----------------------TAIKQDPASSSFVVQLPGTDCSAKVISE 203

Query: 812 VMDALQKKIQSGIIMLVGISK-EKKASVLIVVTE 844
            +  +  +        +G+     + +    V++
Sbjct: 204 AIKQVSSRHHDKSTYFIGLDGPAGRVAHGCFVSQ 237


>gi|146304928|ref|YP_001192244.1| Ala-tRNA(Pro) hydrolase [Metallosphaera sedula DSM 5348]
 gi|145703178|gb|ABP96320.1| Ala-tRNA(Pro) hydrolase [Metallosphaera sedula DSM 5348]
          Length = 235

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 9/215 (4%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D+T F+   GG   DTG  I  G   ++T+V+ +   I   H + +   LR    + 
Sbjct: 28  VILDRTAFHPRGGGLESDTGALILGGNTYRVTEVKFEGNEIV--HVLEKLDGLREGDEVE 85

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID++ R ++   H+A+H++     +   + ++  G  ITP+  + D           L
Sbjct: 86  GRIDWERRYRMMRLHTASHIIASIAFSKYNALIT--GGNITPEYAKDDFNVENK---DLL 140

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             I +  N+I  + + V    + RE+A+       L  K    +    +   +G      
Sbjct: 141 PKIVEEANEIAKRGIKVKVYFLPREEAMKIPGVVKLAEKMPPELETWRIVEIEG--IDIQ 198

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             GG HVS+T EI  + ++   +   G +R+    
Sbjct: 199 ADGGPHVSNTEEIGSIEVIKVENRGKGKKRLYYTV 233


>gi|13924477|gb|AAK49025.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 73

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 830 ISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ K S++   +E +    +  A       AK+ GGGG GGRP++AQ+GG + +K  +
Sbjct: 1   TPEDGKVSLVAAFSEGIYKGKKVQAGKFIGGIAKLCGGGG-GGRPNLAQAGGRDASKLPE 59

Query: 888 AIAGVASFLKK 898
           A+      L++
Sbjct: 60  ALHTAKQQLRE 70


>gi|218674822|ref|ZP_03524491.1| alanyl-tRNA synthetase protein [Rhizobium etli GR56]
          Length = 245

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 80/244 (32%), Gaps = 14/244 (5%)

Query: 492 VKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI--T 544
           V A+ +    +    +          +  DQT FYA +GGQ GDTG              
Sbjct: 3   VNALYRDDFYLSTCEAVVTAVHDDGGIELDQTCFYAASGGQPGDTGQLERADGSKIGLGQ 62

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
                ++ I +H  +          +LVL +D+  R +L   H+A HLL       +   
Sbjct: 63  TKHGASKDIIIHVPLDNAPQPEIGETLVLHVDWPRRYRLMRMHTACHLLS------VVCS 116

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G+ +  +  R D   S+ I   E+ +    +                         
Sbjct: 117 YPITGAAVGEEESRIDFDMSETIDKDEVTARLMELVGQNHPVYLQWITDDELAANPDIVK 176

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +  +        RV  V   +     S  CGGTHVS T E+  ++I          RR  
Sbjct: 177 SKNVRPPIGLG-RVSLVCIGENSSIDSQPCGGTHVSETQEVGQIHIAKIEKKGKENRRFR 235

Query: 725 AITG 728
              G
Sbjct: 236 IRFG 239


>gi|17987215|ref|NP_539849.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|23501932|ref|NP_698059.1| hypothetical protein BR1054 [Brucella suis 1330]
 gi|62289975|ref|YP_221768.1| hypothetical protein BruAb1_1059 [Brucella abortus bv. 1 str.
           9-941]
 gi|82699903|ref|YP_414477.1| alanyl-transfer RNA synthetase [Brucella melitensis biovar Abortus
           2308]
 gi|161619004|ref|YP_001592891.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163843321|ref|YP_001627725.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|189024217|ref|YP_001934985.1| Alanyl-transfer RNA synthetase [Brucella abortus S19]
 gi|225627528|ref|ZP_03785565.1| Alanyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225852557|ref|YP_002732790.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|237815478|ref|ZP_04594476.1| Alanyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|254689282|ref|ZP_05152536.1| Alanyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254693766|ref|ZP_05155594.1| Alanyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|254697419|ref|ZP_05159247.1| Alanyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701801|ref|ZP_05163629.1| Alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|254704343|ref|ZP_05166171.1| Alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|254706757|ref|ZP_05168585.1| Alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|254710136|ref|ZP_05171947.1| Alanyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|254714135|ref|ZP_05175946.1| Alanyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|254716807|ref|ZP_05178618.1| Alanyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|254730317|ref|ZP_05188895.1| Alanyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|256031631|ref|ZP_05445245.1| Alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256044713|ref|ZP_05447617.1| Alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113605|ref|ZP_05454425.1| Alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|256159773|ref|ZP_05457516.1| Alanyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256255031|ref|ZP_05460567.1| Alanyl-tRNA synthetase [Brucella ceti B1/94]
 gi|256257532|ref|ZP_05463068.1| Alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|256263952|ref|ZP_05466484.1| alanyl-transfer RNA synthetase [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369479|ref|YP_003106987.1| hypothetical protein BMI_I1059 [Brucella microti CCM 4915]
 gi|260168760|ref|ZP_05755571.1| hypothetical protein BruF5_10408 [Brucella sp. F5/99]
 gi|260545278|ref|ZP_05821019.1| alanyl-transfer RNA synthetase [Brucella abortus NCTC 8038]
 gi|260564056|ref|ZP_05834542.1| alanyl-transfer RNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260566409|ref|ZP_05836879.1| alanyl-transfer RNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260754791|ref|ZP_05867139.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 6 str.
           870]
 gi|260758014|ref|ZP_05870362.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 4 str.
           292]
 gi|260761837|ref|ZP_05874180.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883808|ref|ZP_05895422.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 9 str.
           C68]
 gi|261214042|ref|ZP_05928323.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 3 str.
           Tulya]
 gi|261218606|ref|ZP_05932887.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M13/05/1]
 gi|261222223|ref|ZP_05936504.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti B1/94]
 gi|261314219|ref|ZP_05953416.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis
           M163/99/10]
 gi|261317689|ref|ZP_05956886.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis B2/94]
 gi|261321897|ref|ZP_05961094.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M644/93/1]
 gi|261752358|ref|ZP_05996067.1| threonyl/alanyl tRNA synthetase SAD [Brucella suis bv. 5 str. 513]
 gi|261755016|ref|ZP_05998725.1| threonyl/alanyl tRNA synthetase SAD [Brucella suis bv. 3 str. 686]
 gi|261758241|ref|ZP_06001950.1| alanyl-transfer RNA synthetase [Brucella sp. F5/99]
 gi|265988722|ref|ZP_06101279.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis
           M292/94/1]
 gi|265991136|ref|ZP_06103693.1| threonyl/alanyl tRNA synthetase SAD [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994972|ref|ZP_06107529.1| threonyl/alanyl tRNA synthetase SAD [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998187|ref|ZP_06110744.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M490/95/1]
 gi|294852359|ref|ZP_06793032.1| alaS [Brucella sp. NVSL 07-0026]
 gi|297248374|ref|ZP_06932092.1| alaS; alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|17982886|gb|AAL52113.1| metal-dependent hydrolase [Brucella melitensis bv. 1 str. 16M]
 gi|23347876|gb|AAN29974.1| conserved hypothetical protein [Brucella suis 1330]
 gi|62196107|gb|AAX74407.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616004|emb|CAJ11030.1| Alanyl-transfer RNA synthetase [Brucella melitensis biovar Abortus
           2308]
 gi|161335815|gb|ABX62120.1| Alanyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163674044|gb|ABY38155.1| Alanyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|189019789|gb|ACD72511.1| Alanyl-transfer RNA synthetase [Brucella abortus S19]
 gi|225617533|gb|EEH14578.1| Alanyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225640922|gb|ACO00836.1| Alanyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|237790315|gb|EEP64525.1| Alanyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|255999639|gb|ACU48038.1| hypothetical protein BMI_I1059 [Brucella microti CCM 4915]
 gi|260096685|gb|EEW80560.1| alanyl-transfer RNA synthetase [Brucella abortus NCTC 8038]
 gi|260154072|gb|EEW89164.1| alanyl-transfer RNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260155927|gb|EEW91007.1| alanyl-transfer RNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260668332|gb|EEX55272.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 4 str.
           292]
 gi|260672269|gb|EEX59090.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674899|gb|EEX61720.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 6 str.
           870]
 gi|260873336|gb|EEX80405.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 9 str.
           C68]
 gi|260915649|gb|EEX82510.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 3 str.
           Tulya]
 gi|260920807|gb|EEX87460.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti B1/94]
 gi|260923695|gb|EEX90263.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M13/05/1]
 gi|261294587|gb|EEX98083.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M644/93/1]
 gi|261296912|gb|EEY00409.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis B2/94]
 gi|261303245|gb|EEY06742.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis
           M163/99/10]
 gi|261738225|gb|EEY26221.1| alanyl-transfer RNA synthetase [Brucella sp. F5/99]
 gi|261742111|gb|EEY30037.1| threonyl/alanyl tRNA synthetase SAD [Brucella suis bv. 5 str. 513]
 gi|261744769|gb|EEY32695.1| threonyl/alanyl tRNA synthetase SAD [Brucella suis bv. 3 str. 686]
 gi|262552655|gb|EEZ08645.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M490/95/1]
 gi|262766085|gb|EEZ11874.1| threonyl/alanyl tRNA synthetase SAD [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001920|gb|EEZ14495.1| threonyl/alanyl tRNA synthetase SAD [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094096|gb|EEZ18018.1| alanyl-transfer RNA synthetase [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660919|gb|EEZ31180.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis
           M292/94/1]
 gi|294820948|gb|EFG37947.1| alaS [Brucella sp. NVSL 07-0026]
 gi|297175543|gb|EFH34890.1| alaS; alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|326409075|gb|ADZ66140.1| Alanyl-transfer RNA synthetase [Brucella melitensis M28]
 gi|326538781|gb|ADZ86996.1| Alanyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 247

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 91/260 (35%), Gaps = 24/260 (9%)

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +           +     V AI   G             ++ D+T FYA +GGQ GDTG
Sbjct: 3   YETEALFREDSYLSTAEGTVLAIAGNG------------GIILDRTNFYATSGGQPGDTG 50

Query: 533 CAIGDGIRLQITDVQKKAE--GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                             E     VH     + +      LVL ID+Q R +L   H+A 
Sbjct: 51  FFERADGSRIEIATTVTGETKNEIVHMPAQGQQMPDVGEKLVLHIDWQRRYKLMRMHTAC 110

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL       +       G+ +  D  R D        S   +S+ + + +++  N PV 
Sbjct: 111 HLLS------VACPFPITGAAVGEDESRVDFDLPDQ--SYTKESVTEKLMELVQANAPVS 162

Query: 651 TRIMNREDAIASGAAALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              ++ E+ +A+                R+  V   + G   S  CGGTHVS T E+  +
Sbjct: 163 IHWISDEEFLANPDIVKSKNVRPPVGLGRIRLVAIGENGSVDSQPCGGTHVSETQEVGEI 222

Query: 709 YIVSESSIRAGIRRIEAITG 728
           +I          RR     G
Sbjct: 223 HIGKIEKKGKENRRFRIRFG 242


>gi|298246147|ref|ZP_06969953.1| Threonyl/alanyl tRNA synthetase SAD [Ktedonobacter racemifer DSM
           44963]
 gi|297553628|gb|EFH87493.1| Threonyl/alanyl tRNA synthetase SAD [Ktedonobacter racemifer DSM
           44963]
          Length = 238

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 91/233 (39%), Gaps = 15/233 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     ++ +   V  D T F+   GGQ  D G    DG   Q+T V K    ++    
Sbjct: 14  KEFDATVLAVEGNAVALDATAFFPGGGGQPHDLGTLSQDGQTWQVTKVSKDERYVWHQ-- 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            VE         +   +D++ R  L   H+A H+L   +    G+ V+  G  + P   R
Sbjct: 72  -VEGEPPAIGSRVHGVLDWERRYALMRTHTAMHILCGVVWRDYGAKVT--GGNMEPLRGR 128

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY----ND 674
            D    + + +  ++ IE  +N  IA+        + R +A  +                
Sbjct: 129 MDF-EFENLRAELVQEIEQRINAEIAEARATRVYFLPRAEADQNPDLIRTKVSLLPADMT 187

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            VRV+ +E  D         GGTHV++T E+  + +V+  S     +R+E   
Sbjct: 188 TVRVLEIEGLD-----IQADGGTHVANTHEVERIRVVNYKSKGKINKRLEIAV 235


>gi|306843926|ref|ZP_07476521.1| alanyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275681|gb|EFM57405.1| alanyl-tRNA synthetase [Brucella sp. BO1]
          Length = 247

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 90/260 (34%), Gaps = 24/260 (9%)

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +           +     V AI   G             ++ D+T FYA +GGQ GDTG
Sbjct: 3   YETEALFREDSYLSTAEGTVLAIAGNG------------GIILDRTNFYATSGGQPGDTG 50

Query: 533 CAIGDGIRLQITDVQKKAE--GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                             E     VH     + +      LVL ID+Q R +L   H+A 
Sbjct: 51  FFERADGSRIEIATTVTGETKNEIVHMPAQGQQMPDVGEKLVLHIDWQRRYKLMRMHTAC 110

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL       +       G+ +  D  R D        S   +S+ + + +++  N PV 
Sbjct: 111 HLLS------VVCPFPITGAAVGEDESRVDFDLPDQ--SYTKESVTEKLMELVQANAPVS 162

Query: 651 TRIMNREDAIASGAAALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              ++ E+ +A+                R+  V   + G   S  CGGTHV  T E+  +
Sbjct: 163 IHWISDEEFLANPDIVKSKNVRPPVGLGRIRLVAIGENGSVDSQPCGGTHVCETQEVGEI 222

Query: 709 YIVSESSIRAGIRRIEAITG 728
           +I          RR     G
Sbjct: 223 HIGKIEKKGKENRRFRIRFG 242


>gi|306840537|ref|ZP_07473296.1| alanyl-tRNA synthetase [Brucella sp. BO2]
 gi|306289552|gb|EFM60770.1| alanyl-tRNA synthetase [Brucella sp. BO2]
          Length = 247

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 90/260 (34%), Gaps = 24/260 (9%)

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +           +     V AI   G             ++ D+T FYA +GGQ GDTG
Sbjct: 3   YETEALFREDSYLSTAEGTVLAIAGNG------------GIILDRTNFYATSGGQPGDTG 50

Query: 533 CAIGDGIRLQITDVQKKAE--GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                             E     VH     + +      LVL ID+Q R +L   H+A 
Sbjct: 51  FFERVDGSRIEIATTVTGETKNEIVHMPAQGQQMPDVGEKLVLHIDWQRRYKLMRMHTAC 110

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL       +       G+ +  D  R D        S   +S+ + + +++  N PV 
Sbjct: 111 HLLS------VVCPFPITGAAVGEDESRVDFDLPDQ--SYTKESVTEKLMELVQANAPVS 162

Query: 651 TRIMNREDAIASGAAALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              ++ E+ +A+                R+  V   + G   S  CGGTHV  T E+  +
Sbjct: 163 IHWISDEEFLANPDIVKSKNVRPPVGLGRIRLVAIGENGSVDSQPCGGTHVCETQEVGEI 222

Query: 709 YIVSESSIRAGIRRIEAITG 728
           +I          RR     G
Sbjct: 223 HIGKIEKKGKENRRFRIRFG 242


>gi|289581020|ref|YP_003479486.1| Alanyl-tRNA synthetase, class IIc-like protein [Natrialba magadii
           ATCC 43099]
 gi|289530573|gb|ADD04924.1| Alanyl-tRNA synthetase, class IIc-like protein [Natrialba magadii
           ATCC 43099]
          Length = 249

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 84/219 (38%), Gaps = 10/219 (4%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI--LRTEMS 570
           +V DQT FY E GGQ  D G    +      +    + +    HH  +E G        +
Sbjct: 27  LVLDQTAFYPEGGGQPADIGSLRLEDGTESWSVTDVQKKDTIYHHLELENGAEAPAPGTT 86

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +V  +D   RR  +  H+A HLL   L  +        G+ +  D  R D    +    A
Sbjct: 87  VVGELDADRRRAHNRYHTAQHLLSAVL--LEEFDAQTTGNQLYADRARLDCA-YERFEDA 143

Query: 631 ELKSIEDNVNDIIAQNLPVVT----RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +L+ +E  +ND++   LPV      R               L  +    VR+V +   D 
Sbjct: 144 DLERLEQRLNDLVDDELPVTWDTLDREDAEARLDPDRTRLHLLPESITEVRIVQI-GADD 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            V     C GTHV +TGEI  + +    +      R+  
Sbjct: 203 AVIDRTACAGTHVENTGEIGHIEVTGRETRGPDEERVRF 241


>gi|124028073|ref|YP_001013393.1| metal-dependent hydrolase [Hyperthermus butylicus DSM 5456]
 gi|123978767|gb|ABM81048.1| predicted metal-dependent hydrolase [Hyperthermus butylicus DSM
           5456]
          Length = 241

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 85/228 (37%), Gaps = 5/228 (2%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYA-EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            E        +   V  + T F+   +GG   D G  I               EG   H 
Sbjct: 14  KEFDAIVTRVEGNAVFLEATAFHPRPSGGLDADHGILILPDGSELRVVDVVMREGDVAHI 73

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              +   L   M +   ID++ R Q+   H+A+H+L   L    G+ V+  G  ITP+  
Sbjct: 74  VDGDLSKLHPGMRVHGVIDWERRYQMMKLHTASHILLAVLYNKYGARVT--GGHITPETA 131

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R D+  +     + ++   +  N II + + V    + RE+A+       L  K    V 
Sbjct: 132 RDDLEINVDDWKSAVRQAVEEANQIIRRCIEVKVYWLPREEALRIPGIVKLADKLPPDVE 191

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            + +    G        GG HV +T EI  + IV   S     +R+  
Sbjct: 192 KLRIVEIPGVD--IQADGGPHVRNTCEIPGIKIVKLESRGRRRKRVYY 237


>gi|163736271|ref|ZP_02143690.1| hypothetical protein RGBS107_14106 [Phaeobacter gallaeciensis
           BS107]
 gi|161390141|gb|EDQ14491.1| hypothetical protein RGBS107_14106 [Phaeobacter gallaeciensis
           BS107]
          Length = 243

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 17/223 (7%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT----DVQKKAEGIFVHHAIVERGIL 565
           +  +V +Q+ FYA  GGQ GDTG                +  K   G  V        + 
Sbjct: 25  EGGLVLNQSVFYATGGGQPGDTGSLSWSDGAGDHHLPITNTVKGEAGRIVLIPAESEPLP 84

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   +D+  R      H+A HLL       +   +  +G  I  +  R D    +
Sbjct: 85  AVGQEVTQALDWDRRFGHMRVHTALHLLS------VVIPLPVSGGSIGAEKGRLDFNMPE 138

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSV 681
                + +++ED +N +IA++L V  R +   +  A+       ++   + N R+R+V +
Sbjct: 139 A--PEDKQALEDALNALIARDLEVSERWITEAELDANPELVKTMSVAPPRGNGRIRLVRI 196

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              D        CGGTHV ST EI  + +          RR+ 
Sbjct: 197 GSADEQ-IDLQPCGGTHVRSTAEIGPIRLGKVEKKGKHNRRVY 238


>gi|307594435|ref|YP_003900752.1| Threonyl/alanyl tRNA synthetase SAD [Vulcanisaeta distributa DSM
           14429]
 gi|307549636|gb|ADN49701.1| Threonyl/alanyl tRNA synthetase SAD [Vulcanisaeta distributa DSM
           14429]
          Length = 240

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 87/231 (37%), Gaps = 10/231 (4%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E            V  DQT F+  +GG   DTG  I  G    + +V K+ E     H +
Sbjct: 15  EFDATVTRIDGNRVWLDQTLFHPRSGGVANDTGRLIWQGEEYVVKEVIKEGEDAV--HIL 72

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 R   +L   ID++ R +L   H+ATH++         + V+            +
Sbjct: 73  DREPRFRVGDTLHGVIDWERRYRLMRLHTATHIIAALAYKKYNALVTGGDITPEYARDDY 132

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT---KYNDRV 676
           ++T S        + +    N+I+ + +PV    + RE+A+       L        D  
Sbjct: 133 NLTLSGDALRKAFQDLIAEANEIVRRGIPVKIYFLRREEAMKIPGVVKLAEREPPPGDEW 192

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           R+V +E  D         GG HV++T EI  +  +   S     +R+    
Sbjct: 193 RIVEIEGID-----IQADGGPHVANTREIGEIVFLKSESRGKDKKRVYYTV 238


>gi|254462531|ref|ZP_05075947.1| alanyl-transfer RNA synthetase domain protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206679120|gb|EDZ43607.1| alanyl-transfer RNA synthetase domain protein [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 242

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 9/234 (3%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK---KA 550
           A ++ GE +       +  V+ DQ+ FYA  GGQ GD+G  + +   L I    K   + 
Sbjct: 10  AYLRDGEAL-VLGHTPEGGVILDQSIFYATGGGQPGDSGMMMWNDNHLPIATCVKVKGRE 68

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           +            +      + L++D++ R      H+A HLL      ++   VS    
Sbjct: 69  DTQLALVPAEPVQLPPVGTQVSLSLDWERRHSHMRVHTALHLLSV----VISLPVSGGSI 124

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            +    L FD+  +     A   S+   +      +   ++    R +       ++   
Sbjct: 125 SVGKGRLDFDMPEAPEDKDALEASLNRLIELDYVVSEGWISEEELRANPTLVKTMSVQPP 184

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             + RVR+V +   D        CGGTHV+ T EI  + +          RR+ 
Sbjct: 185 MGSGRVRLVRIGD-DTRQIDLQPCGGTHVARTSEIGRVRLGKVEKKGKLNRRVY 237


>gi|90423529|ref|YP_531899.1| threonyl/alanyl tRNA synthetase, SAD [Rhodopseudomonas palustris
           BisB18]
 gi|90105543|gb|ABD87580.1| Ala-tRNA(Pro) hydrolase [Rhodopseudomonas palustris BisB18]
          Length = 240

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 79/226 (34%), Gaps = 12/226 (5%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     ++  +  +  D+T FY + GGQ GDTG  +     L++T+  +  +   +    
Sbjct: 20  EFSANVLAATETALALDRTCFYPQGGGQPGDTGQIVAADRVLKVTNTYRDRDNPALIWHD 79

Query: 560 VERGILRT--EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            E G        S+   ID++ R      H+  HLL   +           G  I  D  
Sbjct: 80  CEPGPDGLLRGESVQGVIDWERRYGHMRMHTCLHLLCSLI------DAPVTGCSIAADKG 133

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R D    +     +   I   +N++I  + P   R +   + +               VR
Sbjct: 134 RLDFDLPEMT--LDKDEISRRLNELIEVDHP--VRRVRATENLEQVMRLTRTKLVEAPVR 189

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              +            CGGTHV+S+ EI  +            RR+
Sbjct: 190 DGKINLVQIADVDLQPCGGTHVASSREIGRVVCAKIEKKSRHNRRV 235


>gi|209549040|ref|YP_002280957.1| threonyl/alanyl tRNA synthetase SAD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534796|gb|ACI54731.1| Threonyl/alanyl tRNA synthetase SAD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 83/244 (34%), Gaps = 14/244 (5%)

Query: 492 VKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQIT 544
           V A+ +    +    +      +   +  DQT FYA +GGQ GD+G          +   
Sbjct: 3   VNALYRDDFYLSTCEAVVTAVHEDGGIELDQTCFYATSGGQPGDSGELERADGTKIVLGQ 62

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
                ++ I +H  +          +LVL +D+Q R +L   H+A HLL       +   
Sbjct: 63  TKHGPSKDIVIHVPLENEPRPLVGETLVLHVDWQRRYRLMRMHTACHLLS------VVCS 116

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G+ +  +  R D    + I   E+ +    +               +         
Sbjct: 117 YPITGAAVGEEESRVDFDMVETIDKDEVTAKLMELVGENHPVYLQWITDEDLAANPDIVK 176

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +  +        RV  V   +     S  CGGTHVS T E+  ++I          RR  
Sbjct: 177 SKNVRPPIGLG-RVSLVCIGENSSIDSQPCGGTHVSETQEVGQIHIAKIEKKGKENRRFR 235

Query: 725 AITG 728
              G
Sbjct: 236 IRFG 239


>gi|330470347|ref|YP_004408090.1| threonyl/alanyl tRNA synthetase SAD [Verrucosispora maris
           AB-18-032]
 gi|328813318|gb|AEB47490.1| threonyl/alanyl tRNA synthetase SAD [Verrucosispora maris
           AB-18-032]
          Length = 245

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 14/223 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             S  +  +V D++ FY   GGQ  D G  +  G++ ++    +KA+ +++  A  +   
Sbjct: 27  LHSDPEQGIVLDRSAFYPGGGGQPPDHGVLLWQGVQTRVVGT-RKADDLWLIPAEGDPLP 85

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
             T  ++   ++   R +L   HS  H+L   +    G+ V+  G  + P   R D    
Sbjct: 86  P-TGTTVTGAVEDDRRTRLMRTHSGLHVLCGVVFRDFGALVT--GGNMEPGEARMDFNLP 142

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND----RVRVVS 680
           +  +  +   IE+ VN  +A +  V TR++ R +A+A        +         VR+V 
Sbjct: 143 EVPSDFK-SRIEELVNAEVAADRAVATRVLPRVEALALPDIIRTQSNLIPPDEAEVRIVD 201

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +   D         GGTHV+ST +I  + +V   S     RR+
Sbjct: 202 IVGLD-----VQADGGTHVASTAQIGKVRVVKVESKGRANRRV 239


>gi|325968851|ref|YP_004245043.1| threonyl/alanyl tRNA synthetase SAD [Vulcanisaeta moutnovskia
           768-28]
 gi|323708054|gb|ADY01541.1| Threonyl/alanyl tRNA synthetase SAD [Vulcanisaeta moutnovskia
           768-28]
          Length = 240

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 88/231 (38%), Gaps = 10/231 (4%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     V      V  DQT F+  +GG   DTG  I  G    I +V K++E     H +
Sbjct: 15  EFDATVVRIDGNRVWLDQTLFHPRSGGVANDTGKLIWQGEEYVIKEVIKESEDAV--HIL 72

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 R   S+   ID+  R +L   H+ATH++         + V+            +
Sbjct: 73  DREPRFRVGDSVHGIIDWDRRYRLMRLHTATHIIAALAYKDYNALVTGGDITPEYARDDY 132

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT---KYNDRV 676
           ++T S        + +    N+++ + +PV    + +E+A+       L        +  
Sbjct: 133 NLTLSGDALRKAFQDLIAEANEVVKRGIPVKIYFLKKEEALKIPGIVKLAEREPPPGEEW 192

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           R+V +E  D         GG HV++T EI  +  +   S     +R+    
Sbjct: 193 RIVEIEGID-----IQADGGPHVANTREIGEIVFLKSESRGKDKKRVYYTV 238


>gi|163746383|ref|ZP_02153741.1| hypothetical protein OIHEL45_13300 [Oceanibulbus indolifex HEL-45]
 gi|161380268|gb|EDQ04679.1| hypothetical protein OIHEL45_13300 [Oceanibulbus indolifex HEL-45]
          Length = 240

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 14/220 (6%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTE 568
           +  V+ + + FY   GGQ GD+G    D   L   T V+ +  G         R +    
Sbjct: 25  EGGVILENSLFYPTGGGQPGDSGWLTWDRQELSIATTVRDRDSGRIALVPAEPRALPPVG 84

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   +D+  R +    H+A HLL       +       G  I+    R D        
Sbjct: 85  AYVTQELDWDRRHKHMRVHTALHLLS------VVIPYPVTGGQISASHGRLDFNMPDA-- 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYE 684
             +   +E+ +N  ++ +  V    +   +  A+       ++   +    +R++ +   
Sbjct: 137 PQDRGELEEALNYFVSLDARVSEDWITEAELDAAPELVKTMSVAPPRGRGDIRLIRIGEP 196

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                    CGGTHV+ TGEI  L +          RRI 
Sbjct: 197 Q-EPIDLQPCGGTHVARTGEIGALRLGKIEKKGRLNRRIY 235


>gi|260426183|ref|ZP_05780162.1| threonyl/alanyl tRNA synthetase, SAD [Citreicella sp. SE45]
 gi|260420675|gb|EEX13926.1| threonyl/alanyl tRNA synthetase, SAD [Citreicella sp. SE45]
          Length = 238

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 84/233 (36%), Gaps = 16/233 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +G +V     G    +V D + FY + GGQ GD+G     G  + I        G  V  
Sbjct: 16  EGRVVAHTPEG---GIVLDASIFYPKGGGQPGDSGRIGWHGGGVSIATAVPGEAGDVVLV 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                 +      +   +D+  R +    HSA HLL       +   +   G  I     
Sbjct: 73  PAEPVALPAVGTYVTQRLDWDRRHRHMRVHSALHLL------TVVIPLPVTGGAIAAGSG 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYN 673
           R D          +   IE  +N ++ ++L +    ++     A+        +   +  
Sbjct: 127 RLDFAMPDA--PEDRDQIEAALNALVDRDLVISEDWIDESVLDANPGLVKTMTVQPPRGR 184

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             VR+V +      V     CGGTHV+ TGEI  L +    +     RR+  +
Sbjct: 185 GPVRLVRIGAGRDQV-DLQPCGGTHVARTGEIGSLRLGKIENKGRQNRRVSIL 236


>gi|288574772|ref|ZP_06393129.1| Threonyl/alanyl tRNA synthetase SAD [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570513|gb|EFC92070.1| Threonyl/alanyl tRNA synthetase SAD [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 397

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 103/276 (37%), Gaps = 12/276 (4%)

Query: 506 VSGQKVEVVFDQTPF-YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             G+K  V+ D   F + E GGQ GD+G    D     I + +K  +G+ V    ++ G 
Sbjct: 20  KKGKKASVLIDGDHFLHPEGGGQPGDSGVFSSDNCDGFILNTRKDEDGLCVLDLKLKSGE 79

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           LR    L +  D      LS  HS  H+L   +   +   +S     +  +     + + 
Sbjct: 80  LREGDLLKIERDDVRHSVLSRMHSGEHVLSRIM-EDMRPGLSVYKVAVGEERTGIYMRYD 138

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEY 683
             +    L   ED    ++  +LPV T ++  E+A           + +D  +RVV +  
Sbjct: 139 GDLDWDFLFEAEDRARGVVRSSLPVETLVLPIEEAKRLDGLKARWDRVSDDSIRVVRIPD 198

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            D        C G+HV +T EI  L++ S          + ++   R   +       + 
Sbjct: 199 FD-----LIACSGSHVENTSEIGTLFVESFKGSSPEWEVVFSLDSDRDVLYSREMRRLIS 253

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
                       V   ++ + EE   L+   AK + 
Sbjct: 254 RA----NCRYDEVGKIMDRLGEENGSLRKQLAKVQQ 285


>gi|163741200|ref|ZP_02148592.1| hypothetical protein RG210_17110 [Phaeobacter gallaeciensis 2.10]
 gi|161385553|gb|EDQ09930.1| hypothetical protein RG210_17110 [Phaeobacter gallaeciensis 2.10]
          Length = 243

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 17/223 (7%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT----DVQKKAEGIFVHHAIVERGIL 565
           +  +V +Q+ FYA  GGQ GDTG                +  K   G  V        + 
Sbjct: 25  EGGLVLNQSVFYATGGGQPGDTGRLSWSDGAGDHHLPITNTVKGEAGRIVLIPAEGEPLP 84

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   +D+  R      H+A HLL       +   +  +G  I  +  R D    +
Sbjct: 85  AVGQEVTQALDWDRRFGHMRVHTALHLLS------VVIPLPVSGGSIGAEKGRLDFNMPE 138

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSV 681
                + +++ED +N +IA++L V  R +   +  A+       ++   + N R+R+V +
Sbjct: 139 A--PEDKQALEDALNALIARDLEVSERWITEAELDANPELVKTMSVAPPRGNGRIRLVRI 196

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              D        CGGTHV ST EI  + +          RR+ 
Sbjct: 197 GSADEQ-IDLQPCGGTHVRSTAEIGPIRLGKVEKKGKQNRRVY 238


>gi|254719126|ref|ZP_05180937.1| Alanyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265984121|ref|ZP_06096856.1| threonyl/alanyl tRNA synthetase SAD [Brucella sp. 83/13]
 gi|306838411|ref|ZP_07471256.1| alanyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662713|gb|EEZ32974.1| threonyl/alanyl tRNA synthetase SAD [Brucella sp. 83/13]
 gi|306406551|gb|EFM62785.1| alanyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 247

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 91/260 (35%), Gaps = 24/260 (9%)

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +           +     V AI   G             ++ D+T FYA +GGQ GDTG
Sbjct: 3   YETEALFREDSYLSTAEGTVLAIAGNG------------GIILDRTNFYATSGGQPGDTG 50

Query: 533 CAIGDGIRLQITDVQKKAE--GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                             E     VH     + +      LVL ID+Q+R +L   H+A 
Sbjct: 51  FFERADGSRIEIATTVTGETKNEIVHMPAQGQQMPDVGEKLVLHIDWQHRYKLMRMHTAC 110

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL       +       G+ +  D  R D        S   +S+ + + +++  N PV 
Sbjct: 111 HLLS------VVCPFPITGAVVGEDESRVDFDLPDQ--SYTKESVTEKLMELVRANAPVS 162

Query: 651 TRIMNREDAIASGAAALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              ++ E+ +A+                R+  V   + G   S  CGGTHV  T E+  +
Sbjct: 163 IHWISDEEFLANPDIVKSKNVRPPVGLGRIRLVAIGENGSVDSQPCGGTHVCETQEVGEI 222

Query: 709 YIVSESSIRAGIRRIEAITG 728
           +I          RR     G
Sbjct: 223 HIGKIEKKGKENRRFRIRFG 242


>gi|94311445|ref|YP_584655.1| Ala-tRNA(Pro) hydrolase [Cupriavidus metallidurans CH34]
 gi|93355297|gb|ABF09386.1| Alanyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 238

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 78/224 (34%), Gaps = 15/224 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI-TDVQKKAEGIFVHHAIVER 562
             ++  +  +  DQT  YA +GGQ GDTG       R+    D     +   + H     
Sbjct: 21  TVLAVSEAGIELDQTVCYARSGGQAGDTGTLTTADGRIVTLADTVYADDRQRILHVPASD 80

Query: 563 GIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
               +    + + ID+  R +L   H+  HLL   +       V   G  I+PD  R D 
Sbjct: 81  APALQAGDRVEVKIDWTRRHRLMRLHTCLHLLGSLI------PVPVTGCGISPDSARIDF 134

Query: 622 THSKP--ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
              +     +   + +   +N      +  +T                        +R++
Sbjct: 135 DLPESTLDKAVLTEQLNALINAKTPVTIDRITPEELAAQPDLVRTIGAAPPAGTSTIRII 194

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +   D        CGGTHV++TGEI  + +          RR+
Sbjct: 195 EIPGVD-----RQPCGGTHVANTGEIGAVAVTKIEKKSRTNRRV 233


>gi|84517105|ref|ZP_01004461.1| hypothetical protein SKA53_03594 [Loktanella vestfoldensis SKA53]
 gi|84509000|gb|EAQ05461.1| hypothetical protein SKA53_03594 [Loktanella vestfoldensis SKA53]
          Length = 238

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 76/217 (35%), Gaps = 9/217 (4%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V D   FY  AGGQ GD+G     G  L I    K      +        +     
Sbjct: 25  EGGIVLDACLFYPTAGGQPGDSGSLSWQGTTLDIATAVKGEGDSIILLPAEPAPLPSVGQ 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           SL+  +++  R +    H+A HLL       +   +  +G  I  D  R D         
Sbjct: 85  SLLQKLNWDRRYRHMRVHTALHLLS------VVIPLPVSGGAIATDKGRLDFDMPDAPED 138

Query: 630 AE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
            E    ++   +   +A     +T              ++   + + R+R+V +      
Sbjct: 139 KEALEDALNRLIACNMAVTEEWITEADLDAQPDLVKTMSVQPPRGSGRIRLVRI-GIGAE 197

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                 CGGTHV++T EI  + I          RR+ 
Sbjct: 198 TADLQPCGGTHVANTSEIGPVRIGKIEKKGRQNRRVY 234


>gi|72092667|ref|XP_783700.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115650928|ref|XP_001185487.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 197

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 16/193 (8%)

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++     + G   +  + G R  S+L       K+L   LK      V +V++I +  
Sbjct: 8   IKLLGAEKGKKGKTNLYFLAGNRVLSYLGKCYNNEKALNLSLKCGPDEHVQQVDKIQKSL 67

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVN--FMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +           +L V +   +K+       +S    E DS+ +  V + +        +
Sbjct: 68  KTANKTSLTVLRELAVLEARHYKLNPNRDPLLSIHRKEGDSEYMIIVANEV---GPENAL 124

Query: 826 MLVGISKEKKASV-LIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQSGGPNG 882
           ML+   +E  A + L+    D+++   A       A +L G G    GR    Q      
Sbjct: 125 MLLSTGEENGAGLFLVAGPTDIVEE--AGP---RVASLLEGKGACKNGR---YQGKATKL 176

Query: 883 NKADQAIAGVASF 895
           +K  +A   +  F
Sbjct: 177 SKRSEAEKLLRDF 189


>gi|307942358|ref|ZP_07657709.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307774644|gb|EFO33854.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 240

 Score = 65.2 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 78/224 (34%), Gaps = 12/224 (5%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAI 559
           E      +  ++ D+T FYA  GGQ GDTG    DG     +  T        I      
Sbjct: 20  EVVDINDRGGLILDRTIFYATGGGQPGDTGYLELDGGERLDIAATVYDSDRTTIIHVPVE 79

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +V  +D+Q R  +   H+A HLL  AL           G  I+    R 
Sbjct: 80  GSPLPE-IGAKVVAHLDWQRRYHMMRVHTALHLLSVAL------PFPVTGGQISEGEGRL 132

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D       T  + + I+  + D++A +  V T  +  E+  A        +    R    
Sbjct: 133 DFDM--GDTQLDKEDIKARLADLVAGDHEVTTEWITDEELDAKPDLVKTMSVKPPRGSGR 190

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                 G       CGGTHV+ T EI  + +          RR+
Sbjct: 191 VRLVRIGADVDLQPCGGTHVTRTSEIGTVELGKSEKKGKQNRRV 234


>gi|149914839|ref|ZP_01903369.1| Alanyl-transfer RNA synthetase domain protein [Roseobacter sp.
           AzwK-3b]
 gi|149811632|gb|EDM71467.1| Alanyl-transfer RNA synthetase domain protein [Roseobacter sp.
           AzwK-3b]
          Length = 239

 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 13/219 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  V+ D+T FY   GGQ GD+G    DG RL++    K      V        +     
Sbjct: 25  EGGVILDRTIFYPTGGGQPGDSGTLEWDGGRLEVATTLKSEGDAIVLVPAEPEPLPPVGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +  +++++ R      H+A HLL       +   +   G  IT    R D    + +  
Sbjct: 85  HVQQSLNWRRRFGHMRVHTALHLLS------VVIPLPVTGGSITETKGRLDFDMPEAL-- 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA----ALLGTKYNDRVRVVSVEYED 685
            ++ +IE  +ND++A +LPV    + +ED  A+       ++   K   R+R+V +    
Sbjct: 137 EDIAAIEAALNDLVAADLPVTEAWITQEDLAATPGLVKTLSVAPPKGAGRIRLVRIGQGS 196

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                   CGGTHV+ST +I  L +          RR+ 
Sbjct: 197 D-PVDLQPCGGTHVASTAQIGSLRLGKMEKKGRQNRRVY 234


>gi|284172923|ref|YP_003406304.1| threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
 gi|284017683|gb|ADB63631.1| Threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
          Length = 239

 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 89/233 (38%), Gaps = 13/233 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                    +  +V D T FY E GGQ  D G    DG    I DV+K    +  +   +
Sbjct: 16  FQATVTEATQEYLVLDGTYFYPEGGGQPADRGQLSWDGGSATIRDVRKNHGDVRHYVEAI 75

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E  +  +   +   ID Q R +L   H+A H++   +  +     +  G+ +  D    D
Sbjct: 76  EGTVPDSGTCITGEIDAQRRERLRRMHTAQHVVSKVV--LDMFDAATVGNQVHVDRSHID 133

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS--GAAALLGTKYN--DRV 676
                   + ++ +IE   N I+  +  V      R +  A             +  D +
Sbjct: 134 F-EPADFDATDVATIERESNRIVDADFQVTKAERQRTEVEAETPEGRTQFDQIPDSVDPL 192

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
           RVV ++  D        CGGTHV  TG I  +YI   SS    +  IE   G+
Sbjct: 193 RVVEIDTFD-----LCPCGGTHVDHTGAIGPIYITDRSSKGD-VESIEFELGE 239


>gi|304391378|ref|ZP_07373320.1| threonyl/alanyl tRNA synthetase SAD [Ahrensia sp. R2A130]
 gi|303295607|gb|EFL89965.1| threonyl/alanyl tRNA synthetase SAD [Ahrensia sp. R2A130]
          Length = 242

 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 94/255 (36%), Gaps = 27/255 (10%)

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---G 536
                     ++V A+   G             +  DQT FYA +GGQ GD+G      G
Sbjct: 7   TEDAYAQTCDAVVVAVSADG-------------IELDQTVFYATSGGQPGDSGFLERADG 53

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             I +        ++   +H       +      L+  ID++ R +L   H+A HLL  A
Sbjct: 54  SQIVITGVRYADGSKITILHEIEDGAALPDVGEKLIAHIDWERRHRLMRMHTACHLLSVA 113

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L       +   G+ ++    R D   ++    AEL +    +   +  N  V TR +  
Sbjct: 114 L------PLPITGAAVSETDSRIDFDMTETADKAELTAKLMEL---VEGNHSVFTRWITP 164

Query: 657 EDAIASGAAALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           ++  A+                R+  V   D  V  S  CGGTHVS TGEI  ++I    
Sbjct: 165 DELAANPGLVKSKNVRPPTGVDRIRLVCIGDDAVVDSQPCGGTHVSETGEIGEIHIGKIE 224

Query: 715 SIRAGIRRIEAITGQ 729
                 RR+    G 
Sbjct: 225 KKGRENRRMRIRFGP 239


>gi|114764320|ref|ZP_01443548.1| hypothetical protein 1100011001356_R2601_25346 [Pelagibaca
           bermudensis HTCC2601]
 gi|114543268|gb|EAU46285.1| hypothetical protein R2601_25346 [Roseovarius sp. HTCC2601]
          Length = 238

 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 14/234 (5%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A ++    V  A + Q+  +V D+T F+   GGQ GD+G     G  L I    +     
Sbjct: 10  AYLRDATGVVRAHT-QEGGIVLDRTVFFPRGGGQPGDSGRLDWHGRSLSIATAVQGERDA 68

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            +        +      +   +D++ R +    HSA HLL       +   +   G  I+
Sbjct: 69  VILVPAEPLPLPAPGTVVSQRLDWERRHRHMRVHSALHLLS------VVVPLPVTGGNIS 122

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLG 669
               R D        S E   IE+ +N  + ++L +    +      A+ A      +  
Sbjct: 123 AGHGRLDFATPDLPDSREA--IEEMLNGFVERDLAISADWVEEAVLDANPALVRTMTVQP 180

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +    VR+V +   +        CGGTHV+ TGEI  + I    +     RR+
Sbjct: 181 PRGQGAVRLVRIGTGEEQ-IDLQPCGGTHVARTGEIGRIRIGKIENKGRQNRRV 233


>gi|21226335|ref|NP_632257.1| alanyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|20904584|gb|AAM29929.1| Alanyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 270

 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           VE+   G+   +V D+T FY E+GGQ  DTG  + +    +   V        + H I  
Sbjct: 38  VEKVTEGK--YIVLDRTAFYPESGGQPSDTGKLVRERDGAEFKVVYAGKFNGDISHEISP 95

Query: 562 RGIL-----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            G       +    +   ID+  R +    H+ATH++ + +    G+ ++ N   +    
Sbjct: 96  EGETGAEGLKVGDKVKGIIDWDRRYRHMRMHTATHVIANVIEKEAGAQITGNQLGLDQSR 155

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT--RIMNREDAIASGAAALLGTKYND 674
           + F +        AE + I + +          +   +      +  +  A     +   
Sbjct: 156 VDFSLEAFDREKFAEYEKIANEIIAENHSVNLYLVSRKEAEERLSRLTTLAKGFSEEI-T 214

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            VR+V +E       +   CGG+H+ +TGEI  + I    +     RR+  
Sbjct: 215 EVRLVEIEGV-----TIEACGGSHLKNTGEIKGIKIEKLQNKGKSNRRMYF 260


>gi|120613091|ref|YP_972769.1| metal-dependent hydrolase [Acidovorax citrulli AAC00-1]
 gi|120591555|gb|ABM34995.1| Predicted alanyl-tRNA synthetase-like metal-dependent hydrolase
           [Acidovorax citrulli AAC00-1]
          Length = 255

 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 88/231 (38%), Gaps = 16/231 (6%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL-------QITDVQKKAEGIFVHHAIVE 561
           Q   +V D+T FY   GGQ GD G  +    R        +  D + K     VH     
Sbjct: 33  QGGGIVLDRTVFYPLGGGQAGDAGVLVRADGREVPITDTRKGKDAEGKPTAAIVHVPAPG 92

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                    +   ID++ R +L   H+ THLL H ++         NG  +TPD  R D 
Sbjct: 93  AEPPAVGEEVTARIDWERRHRLMRFHTTTHLLCHLVAQ------PVNGCSVTPDAARLDF 146

Query: 622 THSKPITSAELKSIEDNVNDIIA-QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
               P+ +A L +    +        +  +T            + ++   + + +VR V 
Sbjct: 147 HMDGPLDAAALNAGIARLVAEAHPVAIGAITDAELDAQPELVKSMSVQPPRGSGQVRTVR 206

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           V  +         CGGTHV++T EI  + +       A  RR+  + G  A
Sbjct: 207 VGTDGQTQIDLQPCGGTHVANTAEIGAVVVTKIEKKGAMARRV--VLGFAA 255


>gi|290463151|sp|Q8Q0A4|ALAXM_METMA RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           Short=AlaXp; AltName: Full=Alanyl-tRNA deacylase AlaX-M
          Length = 251

 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           VE+   G+   +V D+T FY E+GGQ  DTG  + +    +   V        + H I  
Sbjct: 19  VEKVTEGK--YIVLDRTAFYPESGGQPSDTGKLVRERDGAEFKVVYAGKFNGDISHEISP 76

Query: 562 RGIL-----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            G       +    +   ID+  R +    H+ATH++ + +    G+ ++ N   +    
Sbjct: 77  EGETGAEGLKVGDKVKGIIDWDRRYRHMRMHTATHVIANVIEKEAGAQITGNQLGLDQSR 136

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT--RIMNREDAIASGAAALLGTKYND 674
           + F +        AE + I + +          +   +      +  +  A     +   
Sbjct: 137 VDFSLEAFDREKFAEYEKIANEIIAENHSVNLYLVSRKEAEERLSRLTTLAKGFSEEI-T 195

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            VR+V +E       +   CGG+H+ +TGEI  + I    +     RR+  
Sbjct: 196 EVRLVEIEGV-----TIEACGGSHLKNTGEIKGIKIEKLQNKGKSNRRMYF 241


>gi|239831925|ref|ZP_04680254.1| Alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824192|gb|EEQ95760.1| Alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 247

 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 89/260 (34%), Gaps = 24/260 (9%)

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +           +     V AI             +   ++ DQT FYA +GGQ GD G
Sbjct: 3   YETEALFREDSYLSTAEGTVLAIT------------ETGGIILDQTNFYATSGGQPGDIG 50

Query: 533 CAIGDGIRLQITDVQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                             E     +H     +        LVL +D+  R +L   H+A 
Sbjct: 51  FFERADGSRIEIAATVTGENKNEIIHVPAEGQAAPAIGEKLVLHVDWPRRYKLMRMHTAC 110

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL       +       G+ +  D  R D     P  + E   + + + + ++ N  V 
Sbjct: 111 HLLS------VVCPFPITGAAVGEDESRVDFDLPDPTYTKEF--VTEKLMERVSANDAVA 162

Query: 651 TRIMNREDAIASGAAALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
            R ++ E+ +A+                R+  V   + GV  S  CGGTHVS T E+  +
Sbjct: 163 IRWISDEEFLANPDIVKSKNVRPPVGLGRIRLVLIGENGVVDSQPCGGTHVSETQEVGEI 222

Query: 709 YIVSESSIRAGIRRIEAITG 728
           +I          RR     G
Sbjct: 223 HIGKIEKKGKENRRFRIRFG 242


>gi|315503581|ref|YP_004082468.1| threonyl/alanyl tRNA synthetase sad [Micromonospora sp. L5]
 gi|315410200|gb|ADU08317.1| Threonyl/alanyl tRNA synthetase SAD [Micromonospora sp. L5]
          Length = 245

 Score = 64.4 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 14/223 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             +  +  +V D++ FY   GGQ  D G  +  G++ +I    +K + +++        +
Sbjct: 27  LAADPEQGIVLDRSAFYPGGGGQPPDHGVLLWQGVQTRIVGT-RKGDDLWL-IPPEGDPV 84

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 +V  ++   R  L   HS  H+L   +    G+ V+  G  + P   R D    
Sbjct: 85  PPVGTEVVGAVEDARRTMLMRTHSGLHVLCGVVFRDFGALVT--GGNMEPGEARMDFNLP 142

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA----ALLGTKYNDRVRVVS 680
           + +       IE+ VN  +A +  V  R++ R +A+A        + L       VR+V 
Sbjct: 143 E-VPPDFKARIEELVNAEVAADRSVAVRVLPRAEALALPDIIRTQSNLIPPEEQEVRIVD 201

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +   D         GGTHV+ST +I  + +V   S     RR+
Sbjct: 202 IVGLD-----VQADGGTHVASTAQIGKVQVVKVESKGRANRRV 239


>gi|209964464|ref|YP_002297379.1| alanyl-tRNA synthetase AlaS [Rhodospirillum centenum SW]
 gi|209957930|gb|ACI98566.1| alanyl-tRNA synthetase AlaS [Rhodospirillum centenum SW]
          Length = 244

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 87/229 (37%), Gaps = 19/229 (8%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA-------EGIFVHH 557
             SG +  V  D+T FY   GGQ GD+G    +G  L+I D +K         + +    
Sbjct: 19  LSSGPEG-VRLDRTLFYPAGGGQPGDSGTLTWEGGTLRIADTRKAGEAAPLSGDDVLHIP 77

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                 +      + L ID++ R +    H+  HLL   +        S  G  +  D  
Sbjct: 78  EDAAAPLPAPGTPVTLEIDWERRHRHMRMHTTLHLLCAVV------PGSVTGGQVGADRS 131

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL---LGTKYND 674
           R D        S +   IE  +N +IA + PV  RI++  +            +      
Sbjct: 132 RLDFDVPSG--SLDKAEIEGALNALIAADHPVTERIVDDAELDRRPDLVRTLSVQPPRGG 189

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +  + +   D        CGGTHV+ TGEI  + +V   +     RRI
Sbjct: 190 GLLRLLLIGTDEAPVDLQPCGGTHVARTGEIGPVSVVKIENKGRQNRRI 238


>gi|121596140|ref|YP_988036.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Acidovorax sp. JS42]
 gi|120608220|gb|ABM43960.1| Ala-tRNA(Pro) hydrolase [Acidovorax sp. JS42]
          Length = 250

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 81/226 (35%), Gaps = 18/226 (7%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG--------IFVHHAIVE 561
           +  VV D+T FY   GGQ GD G  +            +K +         I    A  +
Sbjct: 25  EGGVVLDRTVFYPLGGGQAGDAGVLLRPDGTALAIADTRKGKDAEGRPTADIVHVPAPGQ 84

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              L    ++   ID++ R +L   H+ THLL H ++         NG  ITPD  R D 
Sbjct: 85  ALGLAVGDAVTARIDWERRHRLMRFHTTTHLLCHIVAQ------PVNGCSITPDYARLDF 138

Query: 622 THSKPITSAELKSIEDNV----NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
                +    L +    +    + +    +       N +   +       GT     VR
Sbjct: 139 HMDGALDKDALTAAIARLVAQDHAVTIGAISDAALDANPQLVKSMSVQPPRGTGTVRTVR 198

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           V      D        CGGTHV+ TGEI  + +       A  RR+
Sbjct: 199 VGGACDGDAAQIDLQPCGGTHVARTGEIGAVVVTKIEKKGAMSRRV 244


>gi|326319125|ref|YP_004236797.1| threonyl/alanyl tRNA synthetase SAD [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375961|gb|ADX48230.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 255

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 88/230 (38%), Gaps = 16/230 (6%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL-------QITDVQKKAEGIFVHHAIVER 562
              +V D+T FY   GGQ GD G  +  G R        +  D + K     VH      
Sbjct: 34  DGGIVLDRTVFYPLGGGQAGDAGVLVRAGGREVPIADTRKAKDAEGKPTAAIVHVPAPGA 93

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                   +   ID++ R +L   H+ THLL H ++         NG  +TPD  R D  
Sbjct: 94  EPPAVGEEVTARIDWERRHRLMRFHTTTHLLCHLVAQ------PVNGCSVTPDAARLDFH 147

Query: 623 HSKPITSAELKSIEDNVNDIIA-QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
              P+ +A L +    +        +  +T            + ++   + + +VR V V
Sbjct: 148 MDGPLDAAALNAGIARLVAEAHPVTIGAITDAELDAQPDLVKSMSVQPPRGSGQVRTVRV 207

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             +         CGGTHV++T EI  + +       A  RR+  + G  A
Sbjct: 208 GTDGQPRIDLQPCGGTHVANTAEIGAVVVTKIEKKGAMARRV--VLGFAA 255


>gi|167043424|gb|ABZ08126.1| hypothetical protein ALOHA_HF4000APKG1C9ctg2g29 [uncultured marine
           microorganism HF4000_APKG1C9]
          Length = 243

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 81/218 (37%), Gaps = 16/218 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++  Q+  Y   GGQ GDTG  I DG      +  +   G F+ H + E         + 
Sbjct: 30  LILSQSYCYPRGGGQPGDTGLFIRDG---IGREFSETLGGEFIRHPVDEIADFSVGDEVS 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             I+ + R + +  H+A H++      +        G+ I+ +  R D          + 
Sbjct: 87  CVINGERRNRHASMHTAQHIISALADDL--WGAETVGNQISTEYTRIDFLFPNR-DEYDS 143

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--LLGTKYND---RVRVVSVEYEDGG 687
           +++ D VN +I     V      R+               +       +RVV +E  D  
Sbjct: 144 ETLADAVNSVIGSGTLVNVHEWPRDAVKEHEHMRHTNFMERIPSSITELRVVEIEGID-- 201

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                 C GTHV ST ++  + I S  S  AG  RI  
Sbjct: 202 ---LCPCAGTHVGSTNDLEPIVITSVKSKGAGKFRITY 236


>gi|241204347|ref|YP_002975443.1| threonyl/alanyl tRNA synthetase SAD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858237|gb|ACS55904.1| Threonyl/alanyl tRNA synthetase SAD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 245

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 79/244 (32%), Gaps = 14/244 (5%)

Query: 492 VKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQIT 544
           V A+ +    +    +      +   +  DQT FYA +GGQ GDTG              
Sbjct: 3   VNALYRDDFYLSTCDAVVTAVHEDGGIELDQTCFYATSGGQPGDTGELERADGSKIALGQ 62

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
                ++ + +H  +          +LVL +D+  R +L   H+A HLL       +   
Sbjct: 63  TKHGPSKDVIIHVPLEGAPRPVVGETLVLHVDWPRRYRLMRMHTACHLLS------VVCS 116

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G+ +  +  R D    + I    +      + +                       
Sbjct: 117 YPITGAAVGEEESRVDFDMIETIDKDAVTVKLMQLVEQNHPVTLQWITDEELVANPDIVK 176

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +  +        RV  V   +     S  CGGTHVS T E+  ++I          RR  
Sbjct: 177 SKNVRPPMGLG-RVSLVCIGENSSIDSQPCGGTHVSETQEVGRIHIAKIEKKGKENRRFR 235

Query: 725 AITG 728
              G
Sbjct: 236 IRFG 239


>gi|302870142|ref|YP_003838779.1| threonyl/alanyl tRNA synthetase SAD [Micromonospora aurantiaca ATCC
           27029]
 gi|302573001|gb|ADL49203.1| Threonyl/alanyl tRNA synthetase SAD [Micromonospora aurantiaca ATCC
           27029]
          Length = 245

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 14/223 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             +  +  +V D++ FY   GGQ  D G  +  G++ +I    +K + +++  A  +   
Sbjct: 27  LAADPEQGIVLDRSAFYPGGGGQPPDHGVLLWQGVQTRIVGT-RKGDDLWLIPAEGDPVP 85

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 +   ++   R  L   HS  H+L   +    G+ V+  G  + P   R D    
Sbjct: 86  P-VGTEVAGAVEDTRRTMLMRTHSGLHVLCGVVFRDFGALVT--GGNMEPGEARMDFNLP 142

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA----ALLGTKYNDRVRVVS 680
           + +       IE+ VN  +A +  V  R++ R +A+A        + L       VR+V 
Sbjct: 143 E-VPPDFKARIEELVNAEVAADRSVAVRVLPRAEALALPDIIRTQSNLIPPEEQEVRIVD 201

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +   D         GGTHV+ST +I  + +V   S     RR+
Sbjct: 202 IVGLD-----VQADGGTHVASTAQIGKVQVVKVESKGRANRRV 239


>gi|118589044|ref|ZP_01546451.1| Alanyl-transfer RNA synthetase [Stappia aggregata IAM 12614]
 gi|118438373|gb|EAV45007.1| Alanyl-transfer RNA synthetase [Stappia aggregata IAM 12614]
          Length = 257

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHA 558
             E     ++  +V D+T FYA  GGQ GD+G    +        T V ++ +   VH  
Sbjct: 35  EAEVIGVNERGGIVLDRTVFYATGGGQPGDSGALELEDGTKLEIATAVYEEDKKTIVHVP 94

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
              + +  T   +   ID+  R +L   H+A HLL  AL           G  I     R
Sbjct: 95  SEGQNLPGTGSRVTAHIDWARRYRLMRIHTALHLLSVAL------PFPVTGGQIGDPEGR 148

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D        + +  ++ + +N + + +  V T+ +  E+  A+       +    R   
Sbjct: 149 LDFDM--GDETIDRDALVEKLNALASGDHEVTTQWITDEELDANPGLVKTMSVKPPRGSG 206

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  G       CGGTHV+ T EI +L +    +     RR+
Sbjct: 207 KVRLVRIGSDVDLQPCGGTHVTRTSEIGVLDLGKIENKGKQNRRV 251


>gi|222112295|ref|YP_002554559.1| threonyl/alanyl tRNA synthetase sad [Acidovorax ebreus TPSY]
 gi|221731739|gb|ACM34559.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax ebreus TPSY]
          Length = 250

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 81/226 (35%), Gaps = 18/226 (7%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG--------IFVHHAIVE 561
           +  VV D+T FY   GGQ GD G  +            +K +         I    A  +
Sbjct: 25  EGGVVLDRTVFYPLGGGQAGDAGVLLRPDGSALAIADTRKGKDAEGRPTADIVHVPAPGQ 84

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              L    ++   ID++ R +L   H+ THLL H ++         NG  ITPD  R D 
Sbjct: 85  ALGLAVGDAVTARIDWERRHRLMRFHTTTHLLCHIVAQ------PVNGCSITPDYARLDF 138

Query: 622 THSKPITSAELKSIEDNV----NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
                +    L +    +    + +    +       N +   +       GT     VR
Sbjct: 139 HMDGALDKDALTAAIARLVAQDHAVTIGAISDAALDANPQLVKSMSVQPPRGTGTVRTVR 198

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           V      D        CGGTHV+ TGEI  + +       A  RR+
Sbjct: 199 VGGACDGDAAQIDLQPCGGTHVARTGEIGAVVVTKIEKKGAMSRRV 244


>gi|222148395|ref|YP_002549352.1| alanyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|221735383|gb|ACM36346.1| alanyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 245

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 80/245 (32%), Gaps = 21/245 (8%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           +   ++V A+   G             +  DQT FYA +GGQ GDTG             
Sbjct: 14  STAEAVVTAVHDDGS------------IELDQTCFYATSGGQPGDTGFLERADGSTIQLG 61

Query: 546 VQKKAEG--IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           + +      I +H  +  +        LVL +D+  R +L   H+A HLL       +  
Sbjct: 62  LTRHGPDKSIILHLPLEGQPSPDLGEKLVLHVDWPRRYKLMRMHTACHLLS------VVC 115

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
                G+ +  D  R D   S  I    + +    + +                      
Sbjct: 116 PFPITGAAVGEDESRVDFDMSDAIDRETVTADLMRLVEENHPVYLEWITDAQLAANPDIV 175

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +  +        RV  V   +     S  CGGTHVS T E+  ++I          RR 
Sbjct: 176 KSKNVRPPMGLG-RVSLVCIGENSSVDSQPCGGTHVSETQEVGAIHIAKIEKKGKENRRF 234

Query: 724 EAITG 728
               G
Sbjct: 235 RIRFG 239


>gi|255946485|ref|XP_002564010.1| Pc20g15380 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588745|emb|CAP86867.1| Pc20g15380 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 266

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 19/254 (7%)

Query: 487 GVSSIVKAIVQQGEIVEEA------VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
            + + V AI    ++ E         S +   +V + T F+ + GGQ  DTG   G    
Sbjct: 18  TLETTVTAIFPFNDLEESNRLLFKDASEEHHVIVTEHTIFHPQGGGQPSDTGVLKGPSGA 77

Query: 541 LQITDVQKKAEGIFVHHAIVERGI--LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +T V+  A G  +H  + E      +   +++  ID + R   S  H+A H+L  ++ 
Sbjct: 78  FAVTAVRTDANGQVLHLGLFEGPPSAFKEGDTVLQAIDVERRLLYSRLHTAGHVLGASVR 137

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNRE 657
            +L   +                   +     + K  I++ ++  IA  +PV     + E
Sbjct: 138 HLLEKEIENFDELKASHFPDSAACEFQGSIEGKWKESIQNKLDGYIAAKMPVQIEWWDEE 197

Query: 658 DAIASGAAALLGT----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           D  + G   L+         ++ RVV++   +        CGGTHV ST     + +   
Sbjct: 198 DFRSRGLERLIPDRSLVPAGEKSRVVNIVGAEVY-----PCGGTHVDSTDLCGSVTVKKI 252

Query: 714 SSIRAGIRRIEAIT 727
           S  + G  R+  + 
Sbjct: 253 SRKQ-GNSRVSYVV 265


>gi|254168752|ref|ZP_04875594.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|289596811|ref|YP_003483507.1| Threonyl/alanyl tRNA synthetase SAD [Aciduliprofundum boonei T469]
 gi|197622378|gb|EDY34951.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|289534598|gb|ADD08945.1| Threonyl/alanyl tRNA synthetase SAD [Aciduliprofundum boonei T469]
          Length = 233

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 18/232 (7%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     +      +  D+T FY   GGQ  DTG  I +  +  +    ++ + + +   
Sbjct: 14  KEFKARVIDRSDEGIYLDRTAFYLGGGGQPADTGKIIAN-GKEYVVTGVRREDALHLIEG 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                       +   I+++ R ++   H+A H++           V   G+ +     R
Sbjct: 73  EKPE----IGEEVKGIINWERRYKIMRTHTAVHVISGVAYQ--QFGVVITGNQLYEGRAR 126

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYND 674
            D++  + ++      I +  N ++ ++LPV    +++E+             L  KY D
Sbjct: 127 LDLS-FENMSKELAMQIIEESNKVVKKDLPVRWYFISKEEFKNRPELMRVNPKLYEKY-D 184

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           ++RVV +E  D         GGTHV    EI  + +    S     +RI  +
Sbjct: 185 KIRVVEIEGFD-----IQADGGTHVKHLAEIGKIELQKYESKGKKNKRIYIV 231


>gi|256390992|ref|YP_003112556.1| threonyl/alanyl tRNA synthetase SAD [Catenulispora acidiphila DSM
           44928]
 gi|256357218|gb|ACU70715.1| Threonyl/alanyl tRNA synthetase SAD [Catenulispora acidiphila DSM
           44928]
          Length = 244

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 14/224 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
             +      +V D++ FY   GGQ  D G  +     ++   V  +     V     E  
Sbjct: 25  SVLKSDGEGIVLDRSAFYPGGGGQPPDEGVLVW--GGVRTRIVGVRKGDDLVLIPHDEDP 82

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +     ++   +D + R  L   HS  HLL   +     + V+  G  + P   R D   
Sbjct: 83  LPPAGTAVRGALDDERRTWLMRTHSGLHLLSGVVFRDFNALVT--GGNMEPGTARMDFNL 140

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA----ALLGTKYNDRVRVV 679
            + + +     IE+  N  + ++  +  +++ RE+A A          L     + VR+V
Sbjct: 141 PE-VPADFKARIEEACNVEVVKDHRIDVKVLPREEAFAIPDIIRTATNLVPPELEEVRIV 199

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +   D     +   GGTHV ST  I  + ++   +   G RR+
Sbjct: 200 DIVGLD-----TQADGGTHVESTRWIGKIEVLKVENKGKGFRRL 238


>gi|254168839|ref|ZP_04875680.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|197622276|gb|EDY34850.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
          Length = 233

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 89/232 (38%), Gaps = 18/232 (7%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     +      +  D+T FY   GGQ  DTG  I +  +  +    ++ + + +   
Sbjct: 14  KEFKARVIDRSDEGIYLDRTAFYLGGGGQPADTGKIIAN-GKEYVVTGVRREDALHLIEG 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                       +   ID++ R ++   H+A H++           V   G+ +     R
Sbjct: 73  EKPE----IGEEVKGIIDWERRYKIMRTHTAVHVISGVAYQ--QFGVVITGNQLYEGRAR 126

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYND 674
            D++  + ++      I +  N ++ ++LPV    +++E+             L  KY D
Sbjct: 127 LDLS-FENMSKELAMQIIEESNKVVKKDLPVRWYFISKEEFKNRPELMRVNPKLYEKY-D 184

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           ++RVV +E  D         GGTHV    EI  + +    S     +RI  +
Sbjct: 185 KIRVVEIEGFD-----IQADGGTHVKHLAEIGKIELQKYESKGKKNKRIYIV 231


>gi|254504439|ref|ZP_05116590.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222440510|gb|EEE47189.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 238

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 18/229 (7%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT--DVQKKAEGIFVHHA 558
             +  V  ++  +V D+T FYA  GGQ GDTG    +          V    +   VH  
Sbjct: 16  EADVVVVNERGGIVLDRTVFYATGGGQPGDTGYLELEDGTRIDIATTVYDADKKTIVHVP 75

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
             E+ +      L   ID+  R +L   H+A HLL  AL           G  I     R
Sbjct: 76  AEEQTLPTPGTKLTAHIDWARRYRLMRMHTALHLLSVAL------PFPVTGGQIGDGEGR 129

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYND 674
            D       T+ + + +   +N++   +  V +  ++ E+  A+       ++   +   
Sbjct: 130 LDFDM--GDTALDKEKVAAALNELAGGDHDVASEWISDEELDANPGLVKTMSVQPPRGAG 187

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           RVR+V +    G       CGGTHVS T EI  L +          RR+
Sbjct: 188 RVRLVRI----GRDIDLQPCGGTHVSRTSEIGPLELGKSEKKGKQNRRV 232


>gi|255527935|ref|ZP_05394777.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
 gi|255508362|gb|EET84760.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
          Length = 238

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 7/215 (3%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  V+ D+T FY   GGQ  D G       +  +  V+KK   I+ +    +  +     
Sbjct: 26  ENAVILDRTAFYIGGGGQPCDVGVLETAKDKYVVKKVKKKGNDIYHYI---DGKLPEVNE 82

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
                ID+++R +L   H+A H+L   +     + V+          + F+    +    
Sbjct: 83  MCTGKIDWEHRYKLMRTHTAMHILCGVVWRDYKAQVTGGDMDCLKGRMDFE---FENFDK 139

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             ++ IE+ VN  +     +   I+ RE+A                  +  +   +    
Sbjct: 140 ELVEEIEEKVNKEVQSKRELKVNILEREEAFKIPDLIRTKINLLPEG-IKQIRTVEIEGL 198

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                GGTHV +T E+  + IV   S     +RI 
Sbjct: 199 DLQADGGTHVKNTSEVGKIKIVDYKSKGKINKRIY 233


>gi|89069105|ref|ZP_01156478.1| hypothetical protein OG2516_15309 [Oceanicola granulosus HTCC2516]
 gi|89045278|gb|EAR51344.1| hypothetical protein OG2516_15309 [Oceanicola granulosus HTCC2516]
          Length = 237

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 88/219 (40%), Gaps = 14/219 (6%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           ++  VV D+T FYA  GGQ GD+G    DG  ++I    K A+G  V        +    
Sbjct: 24  EEGGVVLDRTIFYATGGGQPGDSGRLSWDGGAIEIATTVKGADGDVVLVPAEPAPLPPAG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   +D++ R +    H+A HLL       +   +   G  IT +  R D        
Sbjct: 84  ARVRQELDWERRHRHMRVHTALHLLS------VAIPLPVTGGSITAEKGRLDFDMPDAPA 137

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYE 684
              +++    +   +A +LPV    +   +  A         +   +   RVR+V +  +
Sbjct: 138 RDGIEAALARM---VAADLPVSAEWITEGELDARPDLVKTLRVQPPRGTGRVRLVRI-GQ 193

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                    CGGTHV+STGEI  L +          RR+
Sbjct: 194 GADTLDLQPCGGTHVASTGEIGALRLGKVEKKGRQNRRV 232


>gi|255523789|ref|ZP_05390754.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
 gi|255512492|gb|EET88767.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
          Length = 238

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 7/229 (3%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           +++ E    +    +  V+ D+T FY   GGQ  D G    D  +  +  V+KK   ++ 
Sbjct: 12  IKEFECKVISTDEAENAVILDKTAFYIGGGGQPCDVGVLKTDVNKYVVKKVKKKGNDVYH 71

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           +    +  +          ID+ +R +L   H+A H+L   +     + V+         
Sbjct: 72  YI---DGKLPEVNEICTGKIDWDHRYKLMRTHTAMHILCGVVWRDYKAQVTGGDMDCLKG 128

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
            + F+  +      A ++ IE+ VN  +     +   I+ RE+A+               
Sbjct: 129 RMDFEFQNF---DKALVEEIEEKVNKEVQCKRDIKVNILEREEALKIPDLIRTKINLLPE 185

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             +  +   +         GGTHV +T E+  + IV   S     +RI 
Sbjct: 186 -GIKQIRTVEIEGLDLQADGGTHVKNTSEVGKIKIVDYKSKGKINKRIY 233


>gi|296242714|ref|YP_003650201.1| threonyl/alanyl tRNA synthetase SAD [Thermosphaera aggregans DSM
           11486]
 gi|296095298|gb|ADG91249.1| Threonyl/alanyl tRNA synthetase SAD [Thermosphaera aggregans DSM
           11486]
          Length = 254

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 87/214 (40%), Gaps = 8/214 (3%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           K  +VFD+T F+ + GGQ  DTG   G+    ++         +  +  +V   +     
Sbjct: 41  KCYLVFDKTIFHPKTGGQGSDTGWVRGESFEFRVEKALMVGNVVAHYGRVVGGELPVKGS 100

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + L +D++ R +    H+A H+L +A+  +   HV+   +  +P     +    K  + 
Sbjct: 101 PVTLELDWEPRYRAMRLHTAGHILDYAVMRVYEGHVNTLEARHSPPDAYIEYEV-KHASE 159

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS--GAAALLGTKYNDRVRVVSVEYEDGG 687
              + I      I+ +   V    ++ E+       A  L       + R+V +E  +  
Sbjct: 160 KIAEEILREAARIVEEARKVRAFWVSWEELSTKIYNAPNLQRLPRTSKYRIVEIEGVNA- 218

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                 C GTHVS+T E+  + +V       G++
Sbjct: 219 ----IPCTGTHVSNTREVGRVELVRLEETVRGLK 248


>gi|20090862|ref|NP_616937.1| alanyl-tRNA synthetase domain-containing protein [Methanosarcina
           acetivorans C2A]
 gi|74551374|sp|Q8TPA0|ALAXM_METAC RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           AltName: Full=Alanyl-tRNA deacylase AlaX-M
 gi|19915934|gb|AAM05417.1| alanyl-tRNA synthetase domain protein [Methanosarcina acetivorans
           C2A]
          Length = 245

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 21/241 (8%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           + +   IVE+        VV D+T FY E+GGQ  DTG  + +    +   V        
Sbjct: 12  LREFEAIVEKVT--DDKYVVLDRTAFYPESGGQPSDTGKLVREEDGAEFEVVYVGKFNGD 69

Query: 555 VHHAIVERGIL-----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           + H I           +    +   ID+  R +    H+ATH++ + +    G+ ++  G
Sbjct: 70  ISHEITPVDGNAALGLKAGDRVRGIIDWDRRYRHMRMHTATHVIANVIEKEAGAQIT--G 127

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-- 667
           + +  D  R D +  +     +    E   N +I +N PV   +++R++A    +     
Sbjct: 128 NQLGLDKSRVDFSL-EAFDRDKFAEYEKIANKVITENHPVNLYLVSRKEAEEKLSRLTTL 186

Query: 668 ---LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                 +    VR+V +E       +   CGGTH+ +TGEI  + I    +     RR+ 
Sbjct: 187 AKGFSEEI-SEVRLVEIEGI-----TIEACGGTHLKNTGEIKGIKIEKLQNKGKSNRRMY 240

Query: 725 A 725
            
Sbjct: 241 F 241


>gi|317404689|gb|EFV85081.1| Ala-tRNA(Pro) hydrolase [Achromobacter xylosoxidans C54]
          Length = 237

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 73/215 (33%), Gaps = 15/215 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V  DQT  YA +GGQ GD+G       R+      V        VH              
Sbjct: 29  VELDQTVCYARSGGQAGDSGTLTLADGRVLALTDTVYADERRRIVHVLAEGVAPPPVGER 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--IT 628
           + + ID+  R +L   H+  HLL   +           G  I+PD  R D    +     
Sbjct: 89  VTVAIDWPRRHRLMRLHTCLHLLGALV------PAPVTGCSISPDSARIDFDLPESTLDK 142

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +   + +   +       +  +T                      +R+R++ +   D   
Sbjct: 143 ADLTERLNALITAATDVTVNAITPEELAAQPDLVRTIGAAPPAGTERIRIIEIPGVD--- 199

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                CGGTHV++TGEI  + +          RR+
Sbjct: 200 --RQPCGGTHVANTGEIGAVTVTKIEKKSRTNRRV 232


>gi|315425470|dbj|BAJ47133.1| threonyl/alanyl tRNA synthetase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 239

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 86/230 (37%), Gaps = 8/230 (3%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   E V      VV D+T F+   GG + D G     G+  ++ +      G+      
Sbjct: 18  EFSAEVVEVSGDCVVLDRTVFHPRGGGLVSDVGFLRFGGVVSRVVEAFFTDGGVAHRL-- 75

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E G+ R    +   +D++ R ++   H+  H+L   +    G+ ++ N        + F
Sbjct: 76  -EGGVPRVGEVVEGVVDWEKRYRVMRMHTGLHVLAATMVEKTGALITGNNISYDGGRVDF 134

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            +          ++ +    N  +A++ PV    + RE  +++     L  +    V V+
Sbjct: 135 SLEMF---DRGVIEDVVQETNRRLAEDHPVKIYYLEREKVLSTPGLVKLANRLPPDVPVL 191

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            +    G        GG HV +T E+  + +V   +     RR+      
Sbjct: 192 RIVEIVGLD--VQADGGPHVGNTVEVGRINVVKLENKGKTNRRLYFTVSP 239


>gi|262199320|ref|YP_003270529.1| phosphoesterase DHHA1 [Haliangium ochraceum DSM 14365]
 gi|262082667|gb|ACY18636.1| phosphoesterase DHHA1 [Haliangium ochraceum DSM 14365]
          Length = 617

 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG-IIMLVGISKEKKASVLIVVTEDL 846
             +IA V  +   I+  ++  L  +   LQ++++SG   +++   ++ KA++L  +++DL
Sbjct: 498 AEEIAGVALVVACIAGAEAAGLNEIARTLQERLRSGPAAIVLAGERDDKAALLCALSQDL 557

Query: 847 LDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           ++R   A ++       +  G GGGR   
Sbjct: 558 VERDLAADEVLAAMLPFVE-GRGGGRARF 585


>gi|311108327|ref|YP_003981180.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Achromobacter xylosoxidans
           A8]
 gi|310763016|gb|ADP18465.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Achromobacter xylosoxidans A8]
          Length = 236

 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 80/214 (37%), Gaps = 14/214 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V  D+T  YA +GGQ GD+G       R L +TD     +   + H +      +    +
Sbjct: 29  VELDETVCYARSGGQAGDSGTLTLADGRALALTDTVYADDRQRILHVLEGGMTPQVGDRV 88

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD--GLRFDVTHSKPITS 629
            + ID+  R +L   H+  HLL   +           G  I+PD   + FD+  S    +
Sbjct: 89  SVAIDWPRRHRLMRLHTCLHLLGALV------PAPVTGCSISPDSARVDFDLPESTLDKA 142

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
              + +   +      ++  +T      +                 +R+V +   D    
Sbjct: 143 DLTERLNALIEARTGVSINCITPEQLAAEPDLVRTVGAAPPAGTASIRIVEIPGVD---- 198

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               CGGTHV++TGEI  + +          RR+
Sbjct: 199 -RQPCGGTHVANTGEIGAVIVTKIEKKSRTNRRV 231


>gi|53713916|ref|YP_099908.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|52216781|dbj|BAD49374.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46]
          Length = 230

 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 7/173 (4%)

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I VH    +    +  M     ++  N+++    H+A HLL+  +    G   S+N + I
Sbjct: 61  INVHQKYKKENNAQIIMEQQPQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHI 119

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
                + D       T  ++ +IE+ VN+ I ++LPV    M  E+A +    + L    
Sbjct: 120 EKKKSKCDYELPTCPTEEQIHAIEEKVNEAIDRHLPVTCEFMTHEEAKSIVDLSKLPENA 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++ +R+V +   D        C G HV +T EI L  I+S      G  R+  
Sbjct: 180 SEILRIVRIGDYDA-----CACIGQHVENTSEIGLFKIIS-YDYADGKLRLRF 226


>gi|326392943|ref|ZP_08214136.1| phosphoesterase DHHA1 [Thermoanaerobacter ethanolicus JW 200]
 gi|325991015|gb|EGD49814.1| phosphoesterase DHHA1 [Thermoanaerobacter ethanolicus JW 200]
          Length = 41

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G GGGRP MAQ  G N +K D+A+      +K+
Sbjct: 5   GNGGGRPDMAQGTGKNLSKVDEALNKAIDIVKE 37


>gi|319791439|ref|YP_004153079.1| alanyL-tRNA synthetase, class iic-like protein [Variovorax
           paradoxus EPS]
 gi|315593902|gb|ADU34968.1| Alanyl-tRNA synthetase, class IIc-like protein [Variovorax
           paradoxus EPS]
          Length = 252

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 20/235 (8%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK-------AEGIFVHHAIVE 561
            +  +V D+T FY   GGQ GD G       R       +K           FVH    +
Sbjct: 23  DEAGIVLDRTVFYPLGGGQAGDAGVLALADGREVAIADTRKAKNEEGQPTNEFVHVPAPD 82

Query: 562 RGIL----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           +  L    +   ++   +D++ R +L   H+A+HLL H +       V  NG  ITPD  
Sbjct: 83  QAELLAALKPGDTVTARLDWERRHRLMRFHTASHLLCHLV------PVPVNGCSITPDYA 136

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRV 676
           R D   + P+    L +    + +                 +     + ++   +    V
Sbjct: 137 RIDFHMTDPLDKEALTAGLARLVEAAHPLTVGAISDEELDANPALVKSMSVQPPRGTGTV 196

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           R + +  E         CGGTHV++T EI  + +       A  RR+  + G  A
Sbjct: 197 RTIRIGGEGETQIDFQPCGGTHVANTAEIGTVVVTKIEKKSANSRRV--VLGWAA 249


>gi|323173023|gb|EFZ58654.1| alanyl-tRNA synthetase domain protein [Escherichia coli LT-68]
          Length = 51

 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A +L  + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 1   MKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 46


>gi|302840929|ref|XP_002952010.1| hypothetical protein VOLCADRAFT_92618 [Volvox carteri f.
           nagariensis]
 gi|300262596|gb|EFJ46801.1| hypothetical protein VOLCADRAFT_92618 [Volvox carteri f.
           nagariensis]
          Length = 829

 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 96/301 (31%), Gaps = 36/301 (11%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR--- 566
           + EV   +TP + E+GGQ  D G         Q   V+       V     E  +     
Sbjct: 112 RYEVYLAETPMFPESGGQPCDIGQLFVVPSADQAVGVRSWPVVNVVAVMWKEGALCHLTD 171

Query: 567 ----TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV--SQNGSCITPDGLRFD 620
                   + + +D+Q R      H+  H+       +LG+     +            D
Sbjct: 172 ASLEPGTRVEVRLDWQRRYDHMQQHTGQHVFSAVADLLLGADTASWELHPLDPETHGSGD 231

Query: 621 VTHSK------PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN- 673
                       +++ +L  +E   N  +    PV   +++   A       +L      
Sbjct: 232 YGCVAVDLTVPQLSAEQLLELEARANAELRALRPVTPLVLDPRVAADMERMEVLQRDPTF 291

Query: 674 ------------DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                        +VR+V VE  D       +       STGE+ +L +V     R G  
Sbjct: 292 RGQLPPADKIKGGKVRLVHVEGLDANACGGEV-------STGEVQVLKVVGAERTR-GHT 343

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R+  + G RA + L G   +  +L + L          VE +  + R+          +L
Sbjct: 344 RVRVMCGGRALAALAGCLTREAALTAKLTCPPWRHADMVELLLRDRREGAKARKLLAAEL 403

Query: 782 N 782
            
Sbjct: 404 A 404


>gi|242398217|ref|YP_002993641.1| Alanyl-tRNA synthetase-related protein [Thermococcus sibiricus MM
           739]
 gi|242264610|gb|ACS89292.1| Alanyl-tRNA synthetase-related protein [Thermococcus sibiricus MM
           739]
          Length = 213

 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 83/227 (36%), Gaps = 31/227 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + +  ++  ++ +QT FY   GGQ  DTG   G  +     D ++      + H 
Sbjct: 13  KEATAKVLQIKENALLLNQTIFYPTGGGQPHDTGTINGVKVLDVYKDEEE-----NIWHV 67

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGL 617
           +    + R    + L +D+  R +L   H+A HLL H L  +LG    + +GS + P+  
Sbjct: 68  VENPEMFRVGDEVELKLDWDRRYKLMRIHTAMHLLDHILYEVLGKGTWEPHGSGMNPEKG 127

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R+D+ + +                            +        G   +         +
Sbjct: 128 RYDIRYPE-----------------NINQHKEKIIELFNRYVDEGGEVKVWWEGKKRLTQ 170

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +               CGGTHV    EI  L  +  SSI  G +RIE
Sbjct: 171 IR--------DFEILPCGGTHVKDIKEIGHLKKLKRSSIGKGAQRIE 209


>gi|193084147|gb|ACF09813.1| putative metal-dependent hydrolase related to alanyl-tRNA
           synthetase [uncultured marine group III euryarchaeote
           SAT1000-53-B3]
          Length = 244

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 20/235 (8%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   +  +     V  ++T FY   GGQ  D G    +     + DV+KK     +   
Sbjct: 16  KEFQSKVTAVYPGIVELEETAFYHLGGGQPSDKGTLNWEDGESIVYDVRKKNRIRHMVEG 75

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                +     S+   +++  R      H++ HL+   +S +        G+ I  D  R
Sbjct: 76  ----DLPEVGDSVNGKLNWDRRYTHMRMHTSQHLVSAIVSDLY--GADTVGNQIGFDKSR 129

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT-------- 670
            D      ++  E+  + D  ND + +++ V     NR D   +       +        
Sbjct: 130 IDF-KPLKLSMNEIDDLIDRTNDYVTKDISVNISEANRSDLEGNPEIRSSMSSGLWKLLP 188

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           K   R+RV+S++  D        C GTHV S  EI  +  V   +  AG +R+  
Sbjct: 189 KSVTRLRVISIDEID-----VCPCAGTHVRSLKEIGKVEFVKRDNKGAGKQRLTY 238


>gi|326469102|gb|EGD93111.1| alanyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 265

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 89/242 (36%), Gaps = 14/242 (5%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI---RLQITDVQKKA 550
           A+ +  + + +  S +   VV ++T F+ + GGQ  D G           +    +    
Sbjct: 29  ALEEANQQLFKQGSEEDHVVVTEKTIFHPQGGGQPSDIGMITSSTGSSFTVASVRMDALQ 88

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           +G  +H             ++   ID + R   S  H+A H+L  A+  ++   V     
Sbjct: 89  DGQVLHLGRFGSSTFAPGETVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKDVEGFEE 148

Query: 611 CITPDGLRFDVTHSKPITSAEL-KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
                         + +   +   SI+D VN+ IA+ +PV     + +D  + G   L+ 
Sbjct: 149 LKASHFPDSAACEFRGLIEGKWKPSIQDKVNEFIAEAMPVEIEWWDEDDFRSRGLERLIP 208

Query: 670 TK----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                   ++ RVV++   +        CGGTHV +T       +   S    G  R+  
Sbjct: 209 DPTLVPPGEKSRVVNIVGAEVY-----PCGGTHVDTTDLCGHTTVKKISR-SKGTSRVSY 262

Query: 726 IT 727
             
Sbjct: 263 TV 264


>gi|239813741|ref|YP_002942651.1| threonyl/alanyl tRNA synthetase SAD [Variovorax paradoxus S110]
 gi|239800318|gb|ACS17385.1| Threonyl/alanyl tRNA synthetase SAD [Variovorax paradoxus S110]
          Length = 249

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 89/235 (37%), Gaps = 20/235 (8%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGIL 565
               +V D+T FY   GGQ GDTG       R   +  T   K  EG      +      
Sbjct: 23  DDTGIVLDRTVFYPLGGGQAGDTGVLALADGRELAIADTRKVKNEEGQPTQEVVHVPAPG 82

Query: 566 R--------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           +           ++   +D++ R +L   H+A+HLL H +       V  NG  ITPD  
Sbjct: 83  QAELLAALEPGAAVTARLDWERRHRLMRFHTASHLLCHLV------PVPVNGCSITPDYA 136

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIA-QNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           R D   + P+    L +    + +      +  +T      +     + ++   +    V
Sbjct: 137 RIDFHMTDPLDKEALTAGLARLVEAAHPLTVGAITDEELDANPALVKSMSVQPPRGTGTV 196

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           R + +  E         CGGTHV++T EI  + +       A  RR+  + G  A
Sbjct: 197 RTIRIGGEGEAQIDFQPCGGTHVANTAEIGAVMVTKIEKKSANSRRV--VLGWAA 249


>gi|289621971|emb|CBI51149.1| unnamed protein product [Sordaria macrospora]
          Length = 510

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 86/268 (32%), Gaps = 18/268 (6%)

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            +  K+      I   + +    K + ++G+  E   S  +  +V ++T F+ + GGQ  
Sbjct: 246 AKLYKLSTVVSAIKPFSALEEANKLLFKKGKDDESKSSDDEFAIVAEKTIFHPQGGGQPS 305

Query: 530 DTGCAIGDGIRLQI-----TDVQKKAEGIFVHH--AIVERGILRTEMSLVLTIDYQNRRQ 582
           D G        +        D     + +      +       +   ++  +ID   R  
Sbjct: 306 DEGVMTKCNDSVFRVSMVRMDAVNDGQVLHFGRFDSSSSANKFQVGDTIEQSIDIDKRLL 365

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDG-----LRFDVTHSKPITSAELKSIED 637
            S  H+A H+L  A+  +L   +                  F  +          + +++
Sbjct: 366 YSRLHTAGHVLGAAVRHLLEKEIPGFDELKASHFPDIAGCEFQGSIEGKWKEPIQQKVDE 425

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            ++  +   +        R++ +             ++ RVV +   +        CGGT
Sbjct: 426 YIDKAMPVEVDFWDEEDFRKNGLERLIPDRSLAPPGEKFRVVKIAGAEVY-----PCGGT 480

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           HV +T       +   S    G  R+  
Sbjct: 481 HVDTTDLCGKTTVKKISR-SKGTSRVSY 507


>gi|316932601|ref|YP_004107583.1| Threonyl/alanyl tRNA synthetase SAD [Rhodopseudomonas palustris
           DX-1]
 gi|315600315|gb|ADU42850.1| Threonyl/alanyl tRNA synthetase SAD [Rhodopseudomonas palustris
           DX-1]
          Length = 249

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 85/230 (36%), Gaps = 20/230 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHH 557
           E+    V      V  ++T FYAE+GGQ GD G  + D     L              H 
Sbjct: 18  ELETTIVDQSDAGVCLEKTIFYAESGGQPGDVGELVLDSGESLLVADAQYIPGRLRIAHV 77

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                        ++  ID++ R +L   H++ HLL   +           G  I PD  
Sbjct: 78  LATPPDRSLIGAKVLARIDWERRYRLMRLHTSLHLLCSLV------DAPVTGCAIYPDYA 131

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI----MNREDAIASGAAALLGTKYN 673
           R D      +      ++ D +N ++  +LPV        +   +        +   +  
Sbjct: 132 RLDFDIESALDRQ---TLTDRLNALVRNDLPVEIECRSADVLSAEPSLVRTVQVALPQTG 188

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            ++R+VS+   D        CGGTHV STGEI  L + +        RR+
Sbjct: 189 KQLRLVSIGEVD-----RQPCGGTHVRSTGEIGSLAVTNVEKKGRRNRRV 233


>gi|255030426|ref|ZP_05302377.1| alanyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 32

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 1  MS--NVSSIRTTFLEFFQKNGHELLPSSSLIP 30
          M   + + +R  FL+FF++ GH + PS+ L+P
Sbjct: 1  MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVP 32


>gi|293607159|ref|ZP_06689501.1| threonyl and alanyl tRNA synthetase domain protein [Achromobacter
           piechaudii ATCC 43553]
 gi|292814493|gb|EFF73632.1| threonyl and alanyl tRNA synthetase domain protein [Achromobacter
           piechaudii ATCC 43553]
          Length = 239

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 77/244 (31%), Gaps = 30/244 (12%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL---- 541
           +   + V A+  +G             +  D+T  YA +GGQ  D+G       R+    
Sbjct: 15  DQCQATVIAVTPEG-------------IELDETICYARSGGQASDSGTLTLPDGRVVALA 61

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
                  +   + V               + + ID+  R +L   H+  HLL   +    
Sbjct: 62  DTVYADDRQRILHVLALAEGEASPAVGDRVTVAIDWPRRHRLMRLHTCLHLLGALV---- 117

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITS--AELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
                  G  I+PD  R D    +         + +   +N  +   +  +T        
Sbjct: 118 --PAPVTGCSISPDSARIDFDLPESTLEKGELTERLNALINRGLDVTVTGITPEELAAQP 175

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                          ++R+V V   D        CGGTHV +T EI  + I         
Sbjct: 176 DLVRTVGAAPPTGTAKIRIVDVPGVD-----RQPCGGTHVRNTSEIGAVTIAKIEKKSRT 230

Query: 720 IRRI 723
            RR+
Sbjct: 231 NRRV 234


>gi|224823924|ref|ZP_03697033.1| Threonyl/alanyl tRNA synthetase SAD [Lutiella nitroferrum 2002]
 gi|224604379|gb|EEG10553.1| Threonyl/alanyl tRNA synthetase SAD [Lutiella nitroferrum 2002]
          Length = 236

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 81/217 (37%), Gaps = 10/217 (4%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILR 566
            +  VV ++T  Y   GGQ GD          +       + KA    VH    +   L 
Sbjct: 22  DEQGVVLEETLCYPLGGGQPGDCATLSTTDGMVLTVQDTRRDKATRDIVHLVAADAPRLA 81

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L +D+  R +    H+  HLL   +           G  +T +  R D    + 
Sbjct: 82  EGTPVTLELDWSRRHRHMRVHTCLHLLSVVIK------AGVTGGNLTTESGRLDFDLPEG 135

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   +   IE  +N +IA++  V   +M   +A+ +    +        + +  +   + 
Sbjct: 136 M-VLDRDEIERELNRLIAEDRAVKV-VMTSGEALKAQPELIKTMSVTPPLELPEIRLIEV 193

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  CGGTHV+ TGEI  + +    S  A  +R+
Sbjct: 194 DGVDLQPCGGTHVARTGEIGPVVVKKIESKGARNKRV 230


>gi|312870162|ref|ZP_07730296.1| threonine/alanine tRNA ligase second additional domain protein
           [Lactobacillus oris PB013-T2-3]
 gi|311094357|gb|EFQ52667.1| threonine/alanine tRNA ligase second additional domain protein
           [Lactobacillus oris PB013-T2-3]
          Length = 251

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 77/215 (35%), Gaps = 4/215 (1%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +  +  DQT  Y   GGQ  D    + +    Q+ ++++  E    +        +  +
Sbjct: 36  DRRWISLDQTIIYPGGGGQPADQAKLLINEEWYQVVEIRRGQEDGISYKLDRPI--VGDD 93

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            +  + ID+  R Q    H+  H++   L     + V+ +G       L  +       +
Sbjct: 94  QAAFIQIDWAFRYQNMRYHTLLHIISGYLYRKYHALVTSSGIMSDHARLEVEFQEDNVPS 153

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             + + I  N+  +I  + PV T  ++R                     + +V     G 
Sbjct: 154 EFDPELITQNIQQLIKDDFPVTTATIDRNTLNEEDLIRTYTNLIPKS--ITNVRLVKIGD 211

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                C GTHV+STGE+     +   +     +RI
Sbjct: 212 FDEQACAGTHVASTGEVGNFKFIQLKNKGRLKKRI 246


>gi|73669588|ref|YP_305603.1| Ala-tRNA(Pro) hydrolase [Methanosarcina barkeri str. Fusaro]
 gi|121722150|sp|Q46AR9|ALAXM_METBF RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           AltName: Full=Alanyl-tRNA deacylase AlaX-M
 gi|72396750|gb|AAZ71023.1| Ala-tRNA(Pro) hydrolase [Methanosarcina barkeri str. Fusaro]
          Length = 243

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 15/224 (6%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH---AIVERGIL 565
               VV D+T FY E+GGQ  DTG  + +    +   +  +     + H          L
Sbjct: 24  DDKFVVLDRTVFYPESGGQPSDTGKLVRESDGAEFNVLYVRKFNGDISHEIDGENVSNGL 83

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +    +   ID+  R +    H+ATH++ + +    G+ ++ N   +    + F +    
Sbjct: 84  KAGDKVKGFIDWDRRYRHMRMHTATHVIANVIEKEAGAQITGNQLGLDQSRVDFSLEVF- 142

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSV 681
                +    E   ND+IAQ  PV   +++R++A          A   +     VR+V +
Sbjct: 143 --DRDKFAEYEKIANDLIAQKSPVNLYLVSRKEAEEKLSRLTTLAKGFSDEIKEVRIVEI 200

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           E       +   CGGTHV +T EI  + I+   +     RR+  
Sbjct: 201 EGV-----TIEACGGTHVKNTEEIKGVKIIKLQNKGKSNRRMYF 239


>gi|296816921|ref|XP_002848797.1| threonyl/alanyl tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238839250|gb|EEQ28912.1| threonyl/alanyl tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 266

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 15/230 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVER 562
           S +   VV ++T F+ + GGQ  D G       G    +    +    +G  +H      
Sbjct: 42  SDEDHVVVTEETVFHPQGGGQPSDIGTITFSPSGSCFTVASVRMDALQDGQVLHFGRFNA 101

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                  ++   ID + R   S  H+A H+L  A+  ++   V                 
Sbjct: 102 APFAVGDTVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKEVDGFNELKASHFPDSAAC 161

Query: 623 HSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----YNDRVR 677
             + +   + K+ I++ V++ IA  +PV     + +D  + G   L+         ++ R
Sbjct: 162 EFQGLIEGKWKTPIQEKVDEFIAAGMPVEIEWWDEDDFRSRGLERLIPDPSLVPPGEKSR 221

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           VV++   +        CGGTHV +T       +   S    G  R+    
Sbjct: 222 VVNIVGAEVY-----PCGGTHVDTTDLCGQTTVKKVSR-SKGTSRVSYTV 265


>gi|302506078|ref|XP_003014996.1| hypothetical protein ARB_06756 [Arthroderma benhamiae CBS 112371]
 gi|291178567|gb|EFE34356.1| hypothetical protein ARB_06756 [Arthroderma benhamiae CBS 112371]
          Length = 265

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 85/241 (35%), Gaps = 21/241 (8%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI---RLQITDVQKKAE 551
           + ++G   +         VV ++T F+ + GGQ  D G           +    +    +
Sbjct: 37  LFKEGSEEDHV-------VVTEKTIFHPQGGGQPSDIGMITSPSGASFTVTSVRMDALQD 89

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G  +H             ++   ID + R   S  H+A H+L  A+  ++   V      
Sbjct: 90  GQVLHFGRFGPSTFAPGETVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKDVEGFEEL 149

Query: 612 ITPDGLRFDVTHSKPITSAEL-KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
                        + +   +   +I+D VN+ IA  +PV     + +D  + G   L+  
Sbjct: 150 KASHFPDSAACEFRGLIEGKWKPNIQDKVNEFIAAAMPVEIEWWDEDDFRSRGLERLIPD 209

Query: 671 K----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                  ++ RVV++   +        CGGTHV ST       +   S    G  R+   
Sbjct: 210 PTLVPPGEKSRVVNIVGAEVY-----PCGGTHVDSTDLCGQTTVKKISR-SKGTSRVSYT 263

Query: 727 T 727
            
Sbjct: 264 V 264


>gi|119719938|ref|YP_920433.1| threonyl/alanyl tRNA synthetase, SAD [Thermofilum pendens Hrk 5]
 gi|119525058|gb|ABL78430.1| Ala-tRNA(Pro) hydrolase [Thermofilum pendens Hrk 5]
          Length = 240

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 9/239 (3%)

Query: 492 VKAIVQQGEIVEE----AVSGQKVEVVFDQTPFYA-EAGGQLGDTGCAIGDGIRLQITDV 546
           VK + Q+   ++E           +V  DQT F+   +GG   D G  +      ++  V
Sbjct: 2   VKLLFQEDSYLKEFDAVVTRVSGNKVFLDQTAFHPGPSGGLDTDKGWLVLPTGD-RVEVV 60

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q   EG  V H +     L+    +   ID++ R ++   H+A+H+L   L    G+ V+
Sbjct: 61  QALEEGGDVAHVLARAVNLKPGDRVRGVIDWERRYRMMKLHTASHVLAAVLYKKYGALVT 120

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
                       FD++  +    A  +   +  N II   L V    ++R++A+      
Sbjct: 121 GGHIQPEEAKDDFDLSGVEDW-KAAFQQAVEETNRIIGGCLEVKVYWLSRDEALKIPGIV 179

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            L  +    V  + +    G        GG HV +T EI  + +    S  A  +RI  
Sbjct: 180 KLAGRLPPEVEKLRIVEIPGVD--VQADGGPHVKNTCEIGGIVLKKLESKGAKRKRIYY 236


>gi|298251913|ref|ZP_06975716.1| Alanyl-tRNA synthetase, class IIc [Ktedonobacter racemifer DSM
           44963]
 gi|297546505|gb|EFH80373.1| Alanyl-tRNA synthetase, class IIc [Ktedonobacter racemifer DSM
           44963]
          Length = 241

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 93/226 (41%), Gaps = 15/226 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           AVSG +  V  D T FY   GGQ+ D G    +    Q   +        V H +     
Sbjct: 22  AVSGDE--VALDATIFYPGGGGQMADRGLLSWNQGANQAHVISISNRNGTVWHTLDYI-P 78

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
            + E  +  +ID+  R +    H+A  LL   +    G  V+  G  I PD  R D    
Sbjct: 79  PKPETEVTESIDWNFRYRSMRTHTAFLLLCSVIWREFGIQVT--GGQIYPDRARMDFAL- 135

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--AALLGTKYND--RVRVVS 680
           + +    +  +E  VN +IA + P+ T ++ RE A++  A   A +         VR+  
Sbjct: 136 EYLEKDRIAELEQQVNTLIAADYPIHTYMLPREKALSLSALVRARINQLPPHLDEVRMAE 195

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V   D       + GGT V+ T EI  + I+   +     +R+E +
Sbjct: 196 VVGFD-----VQVDGGTLVNHTREIGGIQIIRSENKGRINKRLEIV 236


>gi|302661757|ref|XP_003022542.1| hypothetical protein TRV_03341 [Trichophyton verrucosum HKI 0517]
 gi|291186493|gb|EFE41924.1| hypothetical protein TRV_03341 [Trichophyton verrucosum HKI 0517]
          Length = 265

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 86/242 (35%), Gaps = 14/242 (5%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI---RLQITDVQKKA 550
           A+ +    + +  S +   VV ++T F+ + GGQ  D G           +    +    
Sbjct: 29  ALEEANRQLFKQGSEEDHVVVTEKTIFHPQGGGQPSDIGMITSPSGSSFTVTSVRMDALQ 88

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           +G  +H              +   ID + R   S  H+A H+L  A+  ++   V     
Sbjct: 89  DGQVLHFGRFGPSTFAPGEMVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKEVEGFEE 148

Query: 611 CITPDGLRFDVTHSKPITSAEL-KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
                         + +   +   SI+D VN+ IA  +PV     + +D  + G   L+ 
Sbjct: 149 LKASHFPDSAACEFRGLIEGKWKPSIQDKVNEFIAAAMPVEIEWWDEDDFRSRGLERLIP 208

Query: 670 TK----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                   ++ RVV++   +        CGGTHV ST       +   S    G  R+  
Sbjct: 209 DPTLVPPGEKSRVVNIVGAEVY-----PCGGTHVDSTDLCGQTTVKKISR-SKGTSRVSY 262

Query: 726 IT 727
             
Sbjct: 263 TV 264


>gi|269792214|ref|YP_003317118.1| Threonyl/alanyl tRNA synthetase SAD [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099849|gb|ACZ18836.1| Threonyl/alanyl tRNA synthetase SAD [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 392

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/376 (15%), Positives = 127/376 (33%), Gaps = 23/376 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G +V++  D+ PF+   GGQ G  G  +  G+++++ D + +     +    +  G + 
Sbjct: 11  KGDRVDLCLDENPFHLAGGGQPGGRGMLVSPGVQVEVQDCRVRDGREVLT-GRIIGGDMA 69

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLH-HALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
              ++   +D Q R  ++  HS  H L         G  V +    I        +    
Sbjct: 70  LGETVEAQVDLQWRDWVARMHSGEHALSRALERNRPGLRVFKVN--IGEREGLITLDFQG 127

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----YNDRVRVVSV 681
            +T   L   E+  N ++ ++LPV    +    A           +      + +RVVS+
Sbjct: 128 DLTWDLLWVAEEEANRVVGEDLPVTVEELTGYRAAEDPDLKANWERLQLDPPEIIRVVSL 187

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
              D        C G HV  TG+I  + ++      +    +           +M     
Sbjct: 188 GGYD-----RVACCGVHVERTGQIGGVMVLGFKG-SSPRWEVRYTVDPVRTQLMMEWSRM 241

Query: 742 LKSLASFLKVSQGNVVGRVE-EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MS 798
           ++ ++  +     ++  RV    +E+ +    +  + +  L +      +     F  + 
Sbjct: 242 VRRMSREIGCPPEDI-ERVYWGAFEDAKAKAKLLDRLRDHLCLPFEERVR-GGHRFHLLD 299

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
                +   E+ +     + +     + +  +  E+    +           +A    + 
Sbjct: 300 LRPLGMVPAEMMNFAVRRRVESDPSSLGVGVVPAEQGLRFVACRGAGCPVDLSA--WLKR 357

Query: 859 SAKVLGGGGGGGRPHM 874
                 G  GGG P M
Sbjct: 358 MRP--RGLKGGGSPQM 371


>gi|319644905|ref|ZP_07999138.1| hypothetical protein HMPREF1012_00171 [Bacillus sp. BT1B_CT2]
 gi|317392714|gb|EFV73508.1| hypothetical protein HMPREF1012_00171 [Bacillus sp. BT1B_CT2]
          Length = 235

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 87/220 (39%), Gaps = 18/220 (8%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
            V ++ ++T FY   GGQ  DTG   G  +        +    +       ER +     
Sbjct: 32  DVYIILEETAFYPTGGGQPHDTGTLNGVKVLNVDEIDGEIRHYV-------ERPLPHLND 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +V  ID++ R      H+  H+L  A + +   H            +  DV+    +T 
Sbjct: 85  QVVGVIDWERRFDHMQQHTGQHILSAAFAQLYDLHTVGFHLGNDTVTIDLDVS---ELTE 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
                 E   N+II +N  +V + +  +D +      L      + +R+V ++  D    
Sbjct: 142 EMAGKAEKLANEIITENRSIVAKWVEYDDLVNYPIRKL--PSVKENIRLVMIDEFDYN-- 197

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAG-IRRIEAITG 728
               CGGTH S+TGE+  + +++    R   +  + A+ G
Sbjct: 198 ---GCGGTHPSATGEVGAIKVLNWERQRKKFVCILYAVIG 234


>gi|34499208|ref|NP_903423.1| alanyl-tRNA synthetase-like protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105059|gb|AAQ61415.1| probable alanyl-tRNA synthetase related protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 235

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 87/220 (39%), Gaps = 17/220 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
               ++ + T  Y   GGQ GD+      D   L+I D ++  E   + H       L  
Sbjct: 22  DDAGLILEDTLCYPLGGGQPGDSAALTLADRSALRIADTRRDRETRAILHQTAGDARLAP 81

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L +D+  R +    H+  HLL   +           G  +T +  R D    + +
Sbjct: 82  GTEVTLELDWDRRYRHMRIHTCLHLLGVVVK------AGVTGGNMTAESGRLDFALPEGM 135

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND----RVRVVSVEY 683
              + ++IE  +N ++  +LP+  RI + E   A        +         +R++ +E 
Sbjct: 136 -ELDKENIEAELNRLVDADLPLAVRITSGEALKAQPELIRTMSVTPPLHLPEIRLIEIEG 194

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            D        CGGTHV+ TGE+  + +    S  A  +R+
Sbjct: 195 VD-----LQPCGGTHVARTGEVGRVRVKKIESKGARNKRV 229


>gi|160899658|ref|YP_001565240.1| threonyl/alanyl tRNA synthetase SAD [Delftia acidovorans SPH-1]
 gi|160365242|gb|ABX36855.1| Threonyl/alanyl tRNA synthetase SAD [Delftia acidovorans SPH-1]
          Length = 236

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 31/243 (12%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQIT 544
           +   + V A+  +G             V  D T  YA +GGQ GDTG       R L + 
Sbjct: 15  DRCEATVTAVSAEG-------------VELDATVCYARSGGQAGDTGTLTLADGRSLALI 61

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           D     +   + H +      +    + + ID+  R +L   H+  HLL       +   
Sbjct: 62  DTVYADDRQRILHVLQTDAPPQVGERVQVAIDWDRRHRLMRLHTCLHLL------GVLVP 115

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASG 663
           V   G  I+PD  R D    +  ++ +   + + +N +I  +  V   RI   + A    
Sbjct: 116 VPVTGCSISPDSARLDFDLPE--STLDKTDLTERLNALITASHAVNVDRITPEQLAAQPD 173

Query: 664 AAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                G         +R++ +   D        CGGTHV ST EI  + +          
Sbjct: 174 LVRTAGAAPPGGTSTIRIIDIPGLD-----RQPCGGTHVRSTAEIGTVAVTKIEKKSRTN 228

Query: 721 RRI 723
           RR+
Sbjct: 229 RRV 231


>gi|301163594|emb|CBW23145.1| putative alanyl-tRNA synthetase (fragment) [Bacteroides fragilis
           638R]
          Length = 154

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ++  N+++    H+A HLL+  +    G   S+N + I     + D       T  +
Sbjct: 4   QPQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIEKKKSKCDYELPTCPTEEQ 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           + +IE+ VN+ I ++LPV    M  E+A +    + L    ++ +R+V +   D      
Sbjct: 63  IHAIEEKVNEAIDRHLPVTCEFMTHEEAKSIVDLSKLPENASETLRIVRIGDYDA----- 117

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             C G HV +T EI L  I+S      G  R+  
Sbjct: 118 CACIGQHVENTSEIGLFKIIS-YDYADGKLRLRF 150


>gi|194290242|ref|YP_002006149.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193224077|emb|CAQ70086.1| putative ALANYL-TRNA SYNTHETASE [Cupriavidus taiwanensis LMG 19424]
          Length = 237

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 19/217 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI--FVHHAIVERGILRTEMS 570
           +  D+T  YA +GGQ GDT        R    D    A+     +H       + R    
Sbjct: 29  IELDETVCYARSGGQAGDTATLALADGRTVAIDDTVYADDRTRILHVPAAGAPLPRVGER 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +  ++ 
Sbjct: 89  VTVAIDWDRRHRLMRLHTCLHLLGSLI------PVPVTGCGISPDAARIDFDLPE--STL 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYEDG 686
           +   + + +N +I  N  V T ++  ++  A                  +R++ +   D 
Sbjct: 141 DKADLTERLNALIRANTAVRTTLITPQELAAQPDLVRTIGAAPPAGTASIRIIEIPGVD- 199

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  CGGTHV++TGEI  + +          RR+
Sbjct: 200 ----RQPCGGTHVANTGEIGAVVVTKIEKKSRTNRRV 232


>gi|322816199|gb|EFZ24592.1| hypothetical protein TCSYLVIO_9264 [Trypanosoma cruzi]
          Length = 261

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 80/227 (35%), Gaps = 15/227 (6%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
               +     VV   +  + E GGQ  D G  +     + + +VQ++ +   +       
Sbjct: 14  NSTNTNPSYNVVLTDSVLFPEGGGQPCDHGTIVYGNEEVPVRNVQRRGDTCVISTPC--- 70

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D+  R     +HSA HLL   +       +      +T       + 
Sbjct: 71  -PLEVGEEVEVRVDWPRRFDHMQHHSAQHLLSAVVEKASQCRLPTVSWSLTHPYSFIVLP 129

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVS 680
               I S  +  +E   ND IA+ +PV   +   ++A        +  + +     +  S
Sbjct: 130 TGNKIDSDVVAHLEKVCNDAIARAVPVRCDMYPSKEAYEQALREKVEKEDSGENFRQSRS 189

Query: 681 VEYEDGG---------VHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           +  +  G               C GTHVS+  ++ ++ ++ + +   
Sbjct: 190 IPSDVTGPIRIITVEDDIDQCTCCGTHVSNLTQLQMIKLLHQETKGD 236


>gi|327293520|ref|XP_003231456.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326466084|gb|EGD91537.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 265

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 14/242 (5%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI---RLQITDVQKKA 550
           A+ +    + +  S +   VV ++T F+ + GGQ  D G           +    +    
Sbjct: 29  ALEEANRQLFKQGSEEDHVVVTEKTIFHPQGGGQPSDIGMITSPSGSSFTVTSVRMDALQ 88

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           +G  +H             ++   ID + R   S  H+A H+L  A+  ++   V     
Sbjct: 89  DGQVLHFGRFGPSTFAPGETVQQEIDVEKRFLFSRLHTAGHVLGAAVKHLVEKDVDGFEE 148

Query: 611 CITPDGLRFDVTHSKPITSAEL-KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
                         + +   +   SI+D VN+ IA  +PV     + +D  + G   L+ 
Sbjct: 149 LKASHFPDSAACEFRGLIEGKWKPSIQDKVNEFIAAAMPVEIEWWDEDDFRSRGLERLIP 208

Query: 670 TK----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                   ++ RVV++   +        CGGTHV ST       +   S    G  R+  
Sbjct: 209 DPTLVPPGEKSRVVNIVGAEVY-----PCGGTHVDSTDLCGQTTVKKISR-SKGTSRVSY 262

Query: 726 IT 727
             
Sbjct: 263 TV 264


>gi|253567091|ref|ZP_04844542.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|251944215|gb|EES84724.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5]
          Length = 154

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ++  N+++    H+A HLL+  +    G   S+N + I     + D       T  +
Sbjct: 4   QPQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIEKKKSKCDYELPTCPTEEQ 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           + +IE+ VN+ I ++LPV    M  E+A +    + L    ++ +R+V +   D      
Sbjct: 63  IHAIEEKVNEAIDRHLPVTCEFMTHEEAKSIVDLSKLPENASEILRIVRIGDYDA----- 117

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             C G HV +T EI L  I+S      G  R+  
Sbjct: 118 CACIGQHVENTSEIGLFKIIS-YDYADGKLRLRF 150


>gi|126731388|ref|ZP_01747195.1| Alanyl-transfer RNA synthetase domain protein [Sagittula stellata
           E-37]
 gi|126708299|gb|EBA07358.1| Alanyl-transfer RNA synthetase domain protein [Sagittula stellata
           E-37]
          Length = 238

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 9/219 (4%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  VV +   FY + GGQ GD+G    DG  L I    +   G  +        +     
Sbjct: 25  EGGVVVEPALFYPKGGGQPGDSGWLEWDGRSLAIATTVRGEGGSSILVPAEPAPLPPLGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +V  +D++ R +    H+A HLL       +   +   G  I     R D    +P + 
Sbjct: 85  HVVQILDWELRHKYMRVHTALHLLS------VVIPLPVTGGQIGAGTGRLDFLMPEPPSD 138

Query: 630 AE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
            +   +++   V+  +      ++              ++   +   R+R+V +      
Sbjct: 139 RDGIEQALVHLVDRDLEVTDGWISEDELDARPELVKTMSVQPPRGAGRIRLVRIGTGTEQ 198

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V     CGGTHV+ TGEI  + +    +     RR+  I
Sbjct: 199 V-DLQPCGGTHVARTGEIGAVKLGKIENKGKQNRRVNII 236


>gi|90407604|ref|ZP_01215785.1| Predicted metal-dependent hydrolase [Psychromonas sp. CNPT3]
 gi|90311307|gb|EAS39411.1| Predicted metal-dependent hydrolase [Psychromonas sp. CNPT3]
          Length = 241

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 79/222 (35%), Gaps = 4/222 (1%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +I +       V V  D T FY + GGQ  D G  I DG   Q+   +   EGI      
Sbjct: 18  KITKVIEMDGAVAVYCDNTIFYPQGGGQPCDLGVFIIDGCAHQVYHTETTVEGISHMLKS 77

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
               +  T    +  ID Q R   +  H+A HL+ H +   L  ++S       P+G   
Sbjct: 78  HPSLLTCTGKQCIQHIDIQRRLFNAKLHTAGHLISHIV-ETLDHNLSPVKGHHYPNGSYI 136

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           ++  SK      L    +   D      P   +    + A       LL        R+ 
Sbjct: 137 EMIESKKTNDTFLVEWINEKIDAFVDTSPRKIQSFELDLAEVKSLRPLLSPFIPQSTRIR 196

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            +        +   CGGTHV+ T ++  L +      +  I+
Sbjct: 197 MIA---VDGFTPVPCGGTHVNCTSKLKGLRVTRIKRKKNRIK 235


>gi|315049565|ref|XP_003174157.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311342124|gb|EFR01327.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 265

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 85/242 (35%), Gaps = 14/242 (5%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI---RLQITDVQKKA 550
           A+ +    + +  S +   VV ++T F+ + GGQ  D G           +         
Sbjct: 29  ALEEANRQLFKQGSEEDHVVVTEKTIFHPQGGGQPSDIGTITSPSGSSFTVASVRTDALQ 88

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           +G  +H             ++   ID + R   S  H+A H+L  A+  ++   V     
Sbjct: 89  DGQVLHFGRFSSSPFAVGETVQQEIDVEKRLFYSRLHTAGHVLGAAVKHLVEKEVEGFNE 148

Query: 611 CITPDGLRFDVTHSKPITSAEL-KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
                         + +   +   SI+  V++ IA  +PV     + +D  + G   L+ 
Sbjct: 149 LKASHFPDSAACEFQGLIEGKWKPSIQAKVDEFIAAAMPVEIEWWDEDDFRSRGLERLIP 208

Query: 670 TK----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                   ++ RVV++   +        CGGTHV +T       +   S    G  R+  
Sbjct: 209 DPTLVPPGEKSRVVNIVGAEVY-----PCGGTHVDTTDLCGQTTVKKISR-SKGTSRVSY 262

Query: 726 IT 727
             
Sbjct: 263 TV 264


>gi|299066945|emb|CBJ38140.1| putative Alanyl-tRNA synthetase [Ralstonia solanacearum CMR15]
          Length = 245

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 16/226 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVER---GILRTE 568
           +  D+T FYA  GGQ GDTG  +      + I D   +A+   + H   +    G+L   
Sbjct: 28  IELDRTVFYARGGGQAGDTGTLVLPDGQTVAIADTVYRADRQAILHVPADPADLGLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +  +
Sbjct: 88  LPVSAAIDWARRYRLMRLHTCLHLLGALI------PVPVTGCGISPDAGRIDFDLPE--S 139

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGG 687
           + E +++   +N +IA++ PV   ++  E   A       +G      V  + +   DG 
Sbjct: 140 TLERETLTAQLNALIARDTPVRIALITPEALAAQPQLVRTIGAAPPAGVSAIRIVEIDG- 198

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
                 CGGTHV +TGEI    +          RR+  +T   A  
Sbjct: 199 -IDRQPCGGTHVHATGEIGHATVTKIEKKSRQNRRVV-VTLADAIR 242


>gi|113868616|ref|YP_727105.1| metal-dependent hydrolase [Ralstonia eutropha H16]
 gi|113527392|emb|CAJ93737.1| predicted metal-dependent hydrolase related to alanyl-tRNA
           synthetase HxxxH domain [Ralstonia eutropha H16]
          Length = 237

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 20/225 (8%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERG 563
             +G +  +  D+T  YA +GGQ GDT        R + I D     +   + H      
Sbjct: 22  VAAGAEG-IELDETVCYARSGGQAGDTATLALADGRTVAIADTIYAEDRSRILHVPAPDA 80

Query: 564 I-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
              R    + +TID+  R +L   H+  HLL   +       V   G  I+P+  R D  
Sbjct: 81  PLPRVGERVTVTIDWARRHKLMRLHTCLHLLGSLI------PVPVTGCGISPESARVDFD 134

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRV 678
             +  ++ +   + + +N +I  +  V T ++  ++  A                  +R+
Sbjct: 135 LPE--STLDKADLTERLNALIHADTAVRTTLITPQELAAQPELVRTIGAAPPAGTASIRI 192

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           + +   D        CGGTHV++T EI  + +          RR+
Sbjct: 193 IEIPGVD-----RQPCGGTHVANTSEIGAVVVTRIEKKSRTNRRV 232


>gi|212539444|ref|XP_002149877.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
 gi|210067176|gb|EEA21268.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
          Length = 275

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 82/240 (34%), Gaps = 20/240 (8%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ-----ITDVQK 548
           A+ +    V +    +   VV D+T F+ + GGQ  D G   G    +        DV  
Sbjct: 32  ALDESNRQVFKTGGDEDYVVVVDKTIFHPQGGGQPSDVGTMTGKTGLIFTVTAVRMDVVC 91

Query: 549 KAEGIFVHHAIVERG-----ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             + + + H   +       I +    +   I+   R   S  H+A H+L  ++  ++  
Sbjct: 92  DGQVMHLGHFSTDDAASSVSIFKCGQIVEQVINVDKRLLYSRLHTAGHVLGASVRHLVKD 151

Query: 604 HVSQNGSCITPDG-LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            V                      I      +I+  V++ IA  LPV     +  D    
Sbjct: 152 EVKDFAELKASHFPGAAGCEFQGLIDGKWKDAIQKKVDESIAAKLPVSVEWWDEIDFRNK 211

Query: 663 GAAALLGTK----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           G   LL         ++ R+V++   D        CGGTHV +T       +   +  + 
Sbjct: 212 GLEYLLPDSSLVAPGEKFRMVNIAGLDAY-----PCGGTHVETTDLCGHTTVKKITRKQG 266


>gi|49082120|gb|AAT50460.1| PA2106 [synthetic construct]
          Length = 245

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 28/243 (11%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E +       +  ++ DQT FY + GGQ GD+G               +K          
Sbjct: 16  ECLARITDVVEDGLLLDQTVFYPQGGGQAGDSGWLTLADGTRLRIADTRKGTEAGAGRDA 75

Query: 560 VERGI----------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           +              ++    ++  ID+  R +    H+A H+L   L          NG
Sbjct: 76  ILHIPAEGQATVLRAMKPGEVVLAQIDWVRRYRHMRLHTAAHMLCAVLPY------PVNG 129

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AA 665
             IT +  R D   S+P++   + S    +   +    PV    M+ +   A        
Sbjct: 130 CSITDEHARLDFVTSEPLSREAIDSALAAM---VEAAHPVSIDTMSDDALRARPDLVRTM 186

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++       +VR+VS++  D        CGGTHV++T E+ ++ +       A  RR+  
Sbjct: 187 SVQPPMGAGQVRLVSIKDTD-----LQPCGGTHVANTEEVGVVRVSKMEKKSARTRRVVL 241

Query: 726 ITG 728
           + G
Sbjct: 242 VLG 244


>gi|15597302|ref|NP_250796.1| hypothetical protein PA2106 [Pseudomonas aeruginosa PAO1]
 gi|9948120|gb|AAG05494.1|AE004638_4 hypothetical protein PA2106 [Pseudomonas aeruginosa PAO1]
          Length = 244

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 28/243 (11%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E +       +  ++ DQT FY + GGQ GD+G               +K          
Sbjct: 16  ECLARITDVVEDGLLLDQTVFYPQGGGQAGDSGWLTLADGTRLRIADTRKGTEAGAGRDA 75

Query: 560 VERGI----------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           +              ++    ++  ID+  R +    H+A H+L   L          NG
Sbjct: 76  ILHIPAEGQATVLRAMKPGEVVLAQIDWVRRYRHMRLHTAAHMLCAVLPY------PVNG 129

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AA 665
             IT +  R D   S+P++   + S    +   +    PV    M+ +   A        
Sbjct: 130 CSITDEHARLDFVTSEPLSREAIDSALAAM---VEAAHPVSIDTMSDDALRARPDLVRTM 186

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++       +VR+VS++  D        CGGTHV++T E+ ++ +       A  RR+  
Sbjct: 187 SVQPPMGAGQVRLVSIKDTD-----LQPCGGTHVANTEEVGVVRVSKMEKKSARTRRVVL 241

Query: 726 ITG 728
           + G
Sbjct: 242 VLG 244


>gi|262173105|ref|ZP_06040782.1| predicted metal-dependent hydrolase [Vibrio mimicus MB-451]
 gi|261890463|gb|EEY36450.1| predicted metal-dependent hydrolase [Vibrio mimicus MB-451]
          Length = 243

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 4/217 (1%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
                 V V  D + FY + GGQ  D G    +G+  ++   +   EGI          +
Sbjct: 23  VEMDDTVAVYCDSSIFYPQGGGQPCDLGSLEINGVAYRVHHTEMTEEGIAHVLESHPSLL 82

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +   M  V  ID + R   + +H+A HL+ H +  +  +     G    PD    ++  S
Sbjct: 83  VSHGMQCVQRIDMKRRLINAKSHTAGHLISHIIEEMDNNLSPAKG-HHYPDDSYIELIES 141

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +         + +   +++    P   + ++ +         LL         +  +   
Sbjct: 142 ERTNDNFSVELINEQINLLVNRAPRAIQSIDLDLTEVQSLRPLLCKFIPQSTHIRMIA-- 199

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                +   CGGTHV ST E+  L++      +  I+
Sbjct: 200 -IDGFTPVPCGGTHVVSTSELNGLHVTRIKRKKDRIK 235


>gi|167565993|ref|ZP_02358909.1| alanyl-tRNA synthetase-related protein [Burkholderia oklahomensis
           EO147]
 gi|167574538|ref|ZP_02367412.1| alanyl-tRNA synthetase-related protein [Burkholderia oklahomensis
           C6786]
          Length = 239

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 5/213 (2%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V   Q PFY   GGQL D G    +G    +T  ++   G+++  A            
Sbjct: 25  GAVRLSQHPFYPGGGGQLPDLGAVRWEGGVETVTGFREDERGLWIEFADRVE----IVGD 80

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +  ++D   RR +   H+  H+L+  +       +            R D          
Sbjct: 81  VQSSVDAAFRRAMRELHTDLHVLNALVYRDFDGALVTGVQMNADRTARIDFDLPDADNDR 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L+++E  +NDI+ ++LPV TR +   +A          +          V   +     
Sbjct: 141 -LRALEAELNDIVRRDLPVRTRYVPLAEAQQESGLLRSRSVAPPPTPDGLVRIVEIDGLD 199

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              CGGTH++STGE   + I+   +     RR+
Sbjct: 200 CQACGGTHLASTGESRPVRILKIENKGRSNRRV 232


>gi|154318102|ref|XP_001558370.1| hypothetical protein BC1G_03034 [Botryotinia fuckeliana B05.10]
 gi|150843692|gb|EDN18885.1| hypothetical protein BC1G_03034 [Botryotinia fuckeliana B05.10]
          Length = 269

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 88/256 (34%), Gaps = 17/256 (6%)

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
            T    S    + ++ +++ +        ++   T F+ + GGQ  D G    +      
Sbjct: 20  TTTTSISPFLTLSEEDKLLFKDAKDDTHVIITKSTIFHPQGGGQPSDEGVMESEEGTKFT 79

Query: 544 TDVQKKAE----GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             + + +      +    +            +   ID + R   S  H+A H+L  A+  
Sbjct: 80  VQMVRMSAATDGEVLHFGSYSTPTQFLPGQEITQKIDKEKRLLYSRYHTAGHVLGAAVRH 139

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNRED 658
           ++ S V                     +  +  K+ I+  ++  I  ++PV     +  D
Sbjct: 140 LVSSSVPNFDETKASHFPSSAACEFAGLIESTWKTPIQQKLDGYIEADMPVEIHWWDEAD 199

Query: 659 AIASGA------AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            IA+G        A +G    ++ RVV +   +        CGGTHV ST +     +  
Sbjct: 200 FIANGMERLIPDRAAMGMTKEEKFRVVKIVGAETY-----PCGGTHVDSTSQCGKTTVKK 254

Query: 713 ESSIRAGIRRIEAITG 728
            +    G  R+    G
Sbjct: 255 IAR-SKGTSRVGYTLG 269


>gi|187920789|ref|YP_001889821.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia phytofirmans
           PsJN]
 gi|187719227|gb|ACD20450.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia phytofirmans
           PsJN]
          Length = 237

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 5/213 (2%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV  ++  +   GGQ+ D          ++IT V  + + ++          L  + +
Sbjct: 25  GAVVLGRSALHPGGGGQVSDAATLTHAQGAVRITGVAAEGDVLWHLL----DAPLELDGN 80

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + ID   R  ++  H+ TH+L+  +       +            R D    +    A
Sbjct: 81  VHVAIDAARRAAVAQLHTVTHILNALVYQRFAGALVTGAQINADGTARMDFDLPEADNDA 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L+ +E+ VN++I   + V T  +  ++A A+       +         +V   + G   
Sbjct: 141 -LRLLEEPVNEVIRSAMEVRTYYVGTDEAKATQGLIRSLSVAPPPTPDGTVRIVEIGDLD 199

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              CGGTH+++T +   + I    +     RR+
Sbjct: 200 RQACGGTHLTNTAQSRPIRIAKIENKGRRNRRV 232


>gi|17545707|ref|NP_519109.1| hypothetical protein RSc0988 [Ralstonia solanacearum GMI1000]
 gi|17428001|emb|CAD14690.1| probable threonyl/alanyl trna synthetase protein [Ralstonia
           solanacearum GMI1000]
          Length = 245

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 15/216 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVER---GILRTE 568
           +  DQT FYA  GGQ GDTG  I      + I D    A+ + + H   +    G+L   
Sbjct: 28  IELDQTVFYARGGGQAGDTGTLILPDGQTVAIADTVYHADRLAILHVPADPANLGLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +  +
Sbjct: 88  LPVSAAIDWARRYRLMRLHTCLHLLGALI------PVPVTGCGISPDAGRIDFDLPE--S 139

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGG 687
           + E +++   +N +IA++ PV   ++  E   A       +G      V  + +   DG 
Sbjct: 140 TLERETLTAQLNALIARDTPVRIALITPEALAAQPQLVRTIGAAPPAGVSAIRIVEIDG- 198

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                 CGGTHV +TGEI    +          RR+
Sbjct: 199 -IDRQPCGGTHVRATGEIGRATVTKIEKKSRQNRRV 233


>gi|262274428|ref|ZP_06052239.1| alanyl-tRNA synthetase domain protein [Grimontia hollisae CIP
           101886]
 gi|262220991|gb|EEY72305.1| alanyl-tRNA synthetase domain protein [Grimontia hollisae CIP
           101886]
          Length = 241

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 76/217 (35%), Gaps = 4/217 (1%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
                 V V  D + FY + GGQ  D G    +G   ++  V+   EGI          +
Sbjct: 23  VEMDDTVAVYCDSSIFYPQGGGQPCDLGSLEINGTAYRVYHVETTEEGIAHVLESHPLLL 82

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
               +  +  ID Q R   + +H+A HL+ H +  +  +     G    PD    ++  S
Sbjct: 83  ECGGLPCIQRIDIQRRLVNAKSHTAGHLISHIIEEMDDNLSPAKG-HHYPDDSYIELIDS 141

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +         + +     +    P   + +  + A       LL         +  +   
Sbjct: 142 ERTNDTFSMELINKKIQSLVNQAPRTIQSIELDLAEVQSLRPLLSKFIPHSTHIRMIA-- 199

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                +   CGGTHV+ST E+  L +      +  I+
Sbjct: 200 -IDGFTPVPCGGTHVASTSELTGLQVTRIKRKKDRIK 235


>gi|254240533|ref|ZP_04933855.1| hypothetical protein PA2G_01189 [Pseudomonas aeruginosa 2192]
 gi|126193911|gb|EAZ57974.1| hypothetical protein PA2G_01189 [Pseudomonas aeruginosa 2192]
          Length = 244

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 93/257 (36%), Gaps = 41/257 (15%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               + +  +V+ G             ++ DQT FY + GGQ GD+G             
Sbjct: 15  EECLARITDLVEDG-------------LLLDQTVFYPQGGGQAGDSGWLTLADGTRLRIA 61

Query: 546 VQKKAEGIFVHHAIVERGI----------LRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             +K          +              ++    ++  ID+  R +    H+A H+L  
Sbjct: 62  DTRKGTEAGAGRDAILHIPAEGQATVLRAMKPGEVVLAQIDWVRRYRHMRLHTAAHMLCA 121

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L          NG  IT +  R D   S+P++   + S    +   +    PV    M+
Sbjct: 122 VLPY------PVNGCSITDEHARLDFVTSEPLSREAIDSALAAM---VEAAHPVSIDTMS 172

Query: 656 REDAIASG----AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +   A        ++       +VR+VS++  D        CGGTHV++T E+ ++ + 
Sbjct: 173 DDALRARPDLVRTMSVQPPMGAGQVRLVSIKDTD-----LQPCGGTHVANTEEVGVVRVS 227

Query: 712 SESSIRAGIRRIEAITG 728
                 A  RR+  + G
Sbjct: 228 KMEKKSARTRRVVLVLG 244


>gi|168014116|ref|XP_001759601.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689140|gb|EDQ75513.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 270

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 83/230 (36%), Gaps = 14/230 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
              G+++ VV DQT  + + GGQ  DTG        ++      + +   V+H       
Sbjct: 39  ITEGERLAVVLDQTILHPQGGGQPFDTGSIEAVDGTIKFCVTDVRTKSGVVYHYGNYHEN 98

Query: 565 -------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                        + +++D   R   S  HSA HLL   +S I    +        PDG 
Sbjct: 99  RVMEATGFEPGHEVKISVDGARRTLNSRLHSAGHLLDACMSNIGLGSLEPGKGYHFPDGP 158

Query: 618 RFDV--THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             +   T        +  ++E   N +IA    V   + +  +A A     L      + 
Sbjct: 159 FVEYKGTIPSSDLENKRDALESEANHLIALGGQVRATVASYSEAAALCGGRLPDYIAKES 218

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
              +    E+ G      CGGTHV +  EI  + +     +R G+ ++  
Sbjct: 219 CPRIICLGENLG----CPCGGTHVLAISEIGEIKVSQI-RVRKGVTKVYY 263


>gi|116690299|ref|YP_835922.1| threonyl/alanyl tRNA synthetase, SAD [Burkholderia cenocepacia
           HI2424]
 gi|116648388|gb|ABK09029.1| Ala-tRNA(Pro) hydrolase [Burkholderia cenocepacia HI2424]
          Length = 243

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 85/252 (33%), Gaps = 41/252 (16%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI------ 539
               +IV+AI + G             +  D+T FY   GGQ GDTG             
Sbjct: 14  TQCEAIVQAIGEDG-------------IRLDRTVFYPLGGGQAGDTGTLTLPDGGTIAIA 60

Query: 540 ----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                         A  +           L     +V  ID+  R +    H+A HL+  
Sbjct: 61  DTRKAKFDGATPDDAVHVPASGQEASVATLVPGTRVVAEIDWLRRYRHMRLHTAAHLMCA 120

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L   +      +G  +T D +R D   +  I   +   +E  +   +    PV T  + 
Sbjct: 121 VLPYAV------DGCSVTADYVRLDFATADAIDRDD---VERRLAGFVVGAHPVTTEWIT 171

Query: 656 REDAIASGAAALLGTKYND----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            ++           +        RVR++ +E  D        CGGTHV +T EI  L + 
Sbjct: 172 DDEMAERPELVRTMSVKPPMGLGRVRLLRIENVD-----LQPCGGTHVRNTSEIGGLRVA 226

Query: 712 SESSIRAGIRRI 723
                 A  RR+
Sbjct: 227 KLEKKSARTRRL 238


>gi|107023216|ref|YP_621543.1| threonyl/alanyl tRNA synthetase, SAD [Burkholderia cenocepacia AU
           1054]
 gi|105893405|gb|ABF76570.1| Ala-tRNA(Pro) hydrolase [Burkholderia cenocepacia AU 1054]
          Length = 243

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 85/252 (33%), Gaps = 41/252 (16%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI------ 539
               +IV+AI + G             +  D+T FY   GGQ GDTG             
Sbjct: 14  TQCEAIVQAIGEDG-------------IRLDRTVFYPLGGGQAGDTGTLTLPDGGTIAIA 60

Query: 540 ----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                         A  +           L     +V  ID+  R +    H+A HL+  
Sbjct: 61  DTRKAKFDGATPDDAVHVPASGQEASVATLVPGTRVVAEIDWLRRYRHMRLHTAAHLMCA 120

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L   +      +G  +T D +R D   +  I   +   +E  +   +    PV T  + 
Sbjct: 121 VLPYAV------DGCSVTADYVRLDFATADAIDRDD---VERRLAGFVVGAHPVTTEWIT 171

Query: 656 REDAIASGAAALLGTKYND----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            ++           +        RVR++ +E  D        CGGTHV +T EI  L + 
Sbjct: 172 DDEMAERPELVRTMSVKPPMGLGRVRLLRIENVD-----LQPCGGTHVRNTSEIGGLRVA 226

Query: 712 SESSIRAGIRRI 723
                 A  RR+
Sbjct: 227 KLEKKSARTRRL 238


>gi|73542031|ref|YP_296551.1| Ala-tRNA(Pro) hydrolase [Ralstonia eutropha JMP134]
 gi|72119444|gb|AAZ61707.1| Ala-tRNA(Pro) hydrolase [Ralstonia eutropha JMP134]
          Length = 237

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 19/226 (8%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI--FVHHAIVE 561
             ++     +  D+T  YA +GGQ GDT     +  R         A+     +H     
Sbjct: 20  TVLAVSDAGIELDETICYARSGGQAGDTATLTLEDGRTMSITDTVYADDRARILHVPAEG 79

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
             + R    + +TID++ R +L   H+  HLL   +       V   G  I+PD  R D 
Sbjct: 80  TALPRVGERVTVTIDWERRHRLMRLHTCLHLLGSLI------PVPVTGCGISPDSARIDF 133

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVR 677
              +  ++ +   + + +N +I  N  V   ++  ++  A                  +R
Sbjct: 134 DLPE--STLDKAVLTEQLNALIRANTAVRVTLITPQELAAQPELVRTIGAAPPAGTSSIR 191

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           ++ +   D        CGGTHV++T EI  + +          RR+
Sbjct: 192 IIEIPGVD-----RQPCGGTHVANTSEIGAVVVTKIEKKSRTNRRV 232


>gi|227514263|ref|ZP_03944312.1| possible serine 3-dehydrogenase [Lactobacillus fermentum ATCC
           14931]
 gi|227087376|gb|EEI22688.1| possible serine 3-dehydrogenase [Lactobacillus fermentum ATCC
           14931]
          Length = 326

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 56/166 (33%), Gaps = 35/166 (21%)

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G  ++   TG  A + L    ++LK +A+ L  +   VV    ++  + + L+       
Sbjct: 12  GGTKVLIATGLAAMARLKAAHQQLKEVATALSTTPEEVVAAASDLLAKNKALKKQLKAAT 71

Query: 779 LQLNVEDLS-------------CHKIADVNFMSHIISEVDSKE------LKSVMDALQKK 819
             L  +  +                  D++ ++ ++ +   +E      L++V+D ++  
Sbjct: 72  KALMAQQAAQVLASGQQVNKVHIESAGDISVLAPLVLKGAGEETLLWAKLQAVVDEIKAA 131

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
                                  T D+ D  +  DL   +    GG
Sbjct: 132 GGQAS----------------YRTVDVTDLQSVKDLVAAAQAEFGG 161


>gi|212224048|ref|YP_002307284.1| alanyl-tRNA synthetase-related protein [Thermococcus onnurineus
           NA1]
 gi|212009005|gb|ACJ16387.1| alanyl-tRNA synthetase-related protein [Thermococcus onnurineus
           NA1]
          Length = 214

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 87/227 (38%), Gaps = 31/227 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + +  ++  ++ DQT FY   GGQ  D G   G  +     D         V HA
Sbjct: 13  KEAKAKVLEIREGALLLDQTIFYPTGGGQPHDRGTINGVEVLDVYKDDAG-----NVWHA 67

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGL 617
           + E G  +    + L ID+  R +L   HSA HLL H L+ +LG    +  GS ++ +  
Sbjct: 68  VAEPGKFKPGDEVELKIDWDYRYKLMRIHSAMHLLEHVLNEVLGEGNWELYGSGMSAEKG 127

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R+D+ + + +     + I +  N  + +   +                           R
Sbjct: 128 RYDILYPENVN-QYKEKIIELFNKYVDEGGEMKIWW-------------------EGETR 167

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              +            CGGTHV    EI  L  +  SS+  G +R+E
Sbjct: 168 YTQIR-----DFEVIPCGGTHVKDIKEIGHLKKLKRSSLGKGKQRLE 209


>gi|262403255|ref|ZP_06079815.1| alanyl-tRNA synthetase domain protein [Vibrio sp. RC586]
 gi|262350754|gb|EEY99887.1| alanyl-tRNA synthetase domain protein [Vibrio sp. RC586]
          Length = 243

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 4/217 (1%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
                 V V  D + FY + GGQ  D G    +G+  ++   +   EGI          +
Sbjct: 23  VEMDDTVAVYCDSSIFYPQGGGQPCDLGSLEINGVAYRVHHTETTEEGIAHVLESHPSLL 82

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +   M  +  ID + R   + +H+A HL+ H +  +  +     G    PD    ++  S
Sbjct: 83  VCNGMPCIQRIDMKRRLINAKSHTAGHLISHIIEEMDNNLSPAKG-HHYPDDSYIELIES 141

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +         + +   +++    P   + +  + A       LL        ++  +   
Sbjct: 142 ERTNDNFSVELINEQINLLVNRAPRAIQSIELDLAEVQSLRPLLCKFIPQSTQIRMIA-- 199

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                +   CGGTHV ST E+  L +      +  I+
Sbjct: 200 -IDGFTPVPCGGTHVVSTTELNGLQVTRIKRKKDRIK 235


>gi|46126749|ref|XP_387928.1| hypothetical protein FG07752.1 [Gibberella zeae PH-1]
          Length = 245

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 86/225 (38%), Gaps = 11/225 (4%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVE 561
           +  S     V+ D T FYA+ GGQ  DTG            +T VQK   G  VH     
Sbjct: 26  KVASDDSFLVITDSTIFYAKGGGQPSDTGTMSFPDEASTFTVTSVQKLPSGTIVHLGTYS 85

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                 +  ++  ID   R+  S  H A H+L  A+  +    + +  +   P     D 
Sbjct: 86  GSPFEEQKMVIQKIDKDTRKLHSQIHDAGHILSSAIRRLGIPELREIKAQHYPGTAFVDF 145

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVS 680
                I S   + +E   N+I+  +  +  R  +R++               +D VR V 
Sbjct: 146 --HGIIQSDRKEDLERMANEIVQGDRSIDVRWWSRDELKEKSWTMPEDDGSRDDLVRAVE 203

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +E E        +CGGTH+ ST  +  + +      + G+ R+  
Sbjct: 204 IEGEGAY-----MCGGTHMRSTALVGKIRVRKIKR-QQGVTRVSY 242


>gi|167618495|ref|ZP_02387126.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis Bt4]
          Length = 243

 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 85/233 (36%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ--------ITDVQKKAEGIFVH 556
             +  +  +  D+T FY   GGQ GDTG     G              D     + + V 
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDTGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 557 HAIVERGILRT--EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                          ++V  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAPLASGVKPGDAVVAEIDWAPRHRRMRLHTASHLLCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           + +R D    +PI   ++++    +   +    PV T  +  ++  A        +    
Sbjct: 134 EYVRIDFATVEPIDREQVETRLAEL---VGGAHPVTTEWITDDEMAARPELVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVD-----LQPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|170733637|ref|YP_001765584.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia cenocepacia
           MC0-3]
 gi|169816879|gb|ACA91462.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia cenocepacia
           MC0-3]
          Length = 243

 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 87/252 (34%), Gaps = 41/252 (16%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ--- 542
               +IV+A+   G             +  D+T FY   GGQ GDTG             
Sbjct: 14  TQCEAIVQAVGDDG-------------IRLDRTVFYPLGGGQAGDTGTLTLPDGSTIAIA 60

Query: 543 -----ITDVQKKAEGIFVHHAIVE--RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                  D     + + V     E     L     +V  ID+  R +    H+A HL+  
Sbjct: 61  DTRKAKFDGATPDDAVHVSAPGQEASVATLAPGTRVVAEIDWLRRYRHMRLHTAAHLMCA 120

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L   +      +G  +T D +R D   S  I   +   +E  +   +    PV T  + 
Sbjct: 121 VLPYAV------DGCSVTADYVRLDFATSDAIDRDD---VERRLAGFVVGAHPVTTEWIT 171

Query: 656 REDAIASGAAALLGTKYND----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            ++           +        RVR++ +E  D        CGGTHV +T EI  L + 
Sbjct: 172 DDEMAERPELVRTMSVKPPMGLGRVRLLRIENVD-----LQPCGGTHVRNTSEIGGLRVA 226

Query: 712 SESSIRAGIRRI 723
                 A  RR+
Sbjct: 227 KLEKKSARTRRL 238


>gi|257139722|ref|ZP_05587984.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis E264]
          Length = 243

 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI--------RLQITDVQKKAEGIFVH 556
             +  +  +  D+T FY   GGQ GDTG     G         R    D     + + V 
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDTGTLTLAGGAALVVADTRKAKFDGATPDDAVHVL 79

Query: 557 HAIVERGILRT--EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                          ++V  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAPLASGVKPGDAVVAEIDWAPRHRRMRLHTASHLLCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           + +R D    +PI   ++++    +   +    PV T  +  ++  A        +    
Sbjct: 134 EYVRIDFATVEPIDREQVETRLAEL---VGGAHPVTTEWITDDEMAARPELVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVD-----LQPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|167580389|ref|ZP_02373263.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis TXDOH]
          Length = 243

 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 85/233 (36%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ--------ITDVQKKAEGIFVH 556
             +  +  +  D+T FY   GGQ GDTG     G              D     + + V 
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDTGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 557 HAIVERGILRT--EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                          ++V  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAPLASGVKPGDAVVAEIDWAPRHRRMRLHTASHLLCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           + +R D    +PI   ++++    +   +    PV T  +  E+  A        +    
Sbjct: 134 EYVRIDFATVEPIDREQVETRLAEL---VGGAHPVTTEWITDEEMAARPELVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVD-----LQPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|206560731|ref|YP_002231496.1| putative alanyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|198036773|emb|CAR52673.1| putative alanyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 243

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 87/252 (34%), Gaps = 41/252 (16%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               +IV+A+   G             +  D+T FY   GGQ GDTG             
Sbjct: 14  TQCEAIVQAVGDDG-------------IRLDRTVFYPLGGGQAGDTGTLTLPDGSTIAIA 60

Query: 546 VQKKAE----------GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             +KA+           +           L     +V  ID+  R +    H+A HL+  
Sbjct: 61  DTRKAKFDGATPDDAVHVPAPDQEASVATLAPGTRVVAAIDWLRRYRHMRLHTAAHLMCA 120

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L   +      +G  +T D +R D   S  I   +   +E  +   +    PV T  + 
Sbjct: 121 VLPYAV------DGCSVTADYVRLDFATSDAIDRDD---VERRLAGFVVGAHPVTTEWIT 171

Query: 656 REDAIASGAAALLGTKYND----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            ++           +        RVR++ +E  D        CGGTHV +T EI  L + 
Sbjct: 172 DDEMAERPELVRTMSVKPPMGLGRVRLLRIENVD-----LQPCGGTHVRNTSEIGGLRVA 226

Query: 712 SESSIRAGIRRI 723
                 A  RR+
Sbjct: 227 KLEKKSARTRRL 238


>gi|124504241|gb|AAI28176.1| AARS2 protein [Homo sapiens]
          Length = 171

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 3/141 (2%)

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
            ++  V+ +              +     ++L          +   +S      L  V+ 
Sbjct: 29  ELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSKG-PLIVDTVSAESLSVLVKVVR 87

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
            L ++  S  ++L+      K      V +  +  F A   A      +GG   G R  +
Sbjct: 88  QLCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VV 146

Query: 875 AQSGGPNGNKADQAIAGVASF 895
           AQ  G   +  + A++   ++
Sbjct: 147 AQGTGSTTD-LEAALSIAQTY 166


>gi|300704680|ref|YP_003746283.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957]
 gi|299072344|emb|CBJ43678.1| putative Alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957]
          Length = 239

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 77/217 (35%), Gaps = 17/217 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIR----LQITDVQKKAEGIFVHHAIVERGILRTE 568
           V  DQT FYA +GGQ GD G  +    +            +   + V     + G+L   
Sbjct: 28  VELDQTVFYARSGGQAGDAGTLVLPDGQTVAIADTVYSTDRQTILHVPADPADLGLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +   
Sbjct: 88  VPVSAAIDWPRRYRLMRLHTCLHLLGALI------PVPVTGCGISPDAGRIDFDLPESTL 141

Query: 629 SAEL--KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
             E     +   +       + ++T             A          +R+V +E  D 
Sbjct: 142 ERETLTAQLNALIERDTPVRIDLITPEALAAQPELVRTAGAAPPAGMTAIRIVEIEGID- 200

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  CGGTHV +TGEI  + +          RR+
Sbjct: 201 ----RQPCGGTHVRATGEIGHVLVTRIEKKSRQNRRV 233


>gi|254247630|ref|ZP_04940951.1| Threonyl/alanyl tRNA synthetase, SAD [Burkholderia cenocepacia
           PC184]
 gi|124872406|gb|EAY64122.1| Threonyl/alanyl tRNA synthetase, SAD [Burkholderia cenocepacia
           PC184]
          Length = 243

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 85/252 (33%), Gaps = 41/252 (16%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               +IV+A+   G             +  D+T FY   GGQ GDTG             
Sbjct: 14  TQCEAIVQAVGDDG-------------IRLDRTVFYPLGGGQAGDTGTLTLPDGSTIAIA 60

Query: 546 VQKKAEGIFVHHAIVERGILR----------TEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             +KA+                             +V  ID+  R +    H+A HL+  
Sbjct: 61  DTRKAKFDGATPDDAVHVPAPGQEASVATLAPGTRVVAEIDWLRRYRHMRLHTAAHLMCA 120

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L   +      +G  +T D +R D   S  I   +   +E  +   +    PV T  + 
Sbjct: 121 VLPYAV------DGCSVTADYVRLDFATSDAIDRDD---VERRLAGFVVGAHPVTTEWIT 171

Query: 656 REDAIASGAAALLGTKYND----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            ++           +        RVR++ +E  D        CGGTHV +T EI  L + 
Sbjct: 172 DDEMAERPELVRTMSVKPPMGLGRVRLLRIENVD-----LQPCGGTHVRNTSEIGGLRVA 226

Query: 712 SESSIRAGIRRI 723
                 A  RR+
Sbjct: 227 KLEKKSARTRRL 238


>gi|262164694|ref|ZP_06032432.1| alanyl-tRNA synthetase domain protein [Vibrio mimicus VM223]
 gi|262027074|gb|EEY45741.1| alanyl-tRNA synthetase domain protein [Vibrio mimicus VM223]
          Length = 243

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 78/217 (35%), Gaps = 4/217 (1%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
                 V V  D + FY + GGQ  D G    +GI  ++   +   EGI          +
Sbjct: 23  VEMDDTVAVYCDSSIFYPQGGGQPCDLGSLEINGIAYRVHHTETTEEGIAHVLESHPSLL 82

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +   M  +  ID + R   + +H+A HL+ H +  +  +     G    P     ++  S
Sbjct: 83  ICNGMPCIQRIDMKRRLINAKSHTAGHLISHIIEEMDNNLSPAKG-HHYPGDSYIELIES 141

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +         + +   +++    P   + +  + A       LL        ++  +   
Sbjct: 142 ERTNDNFSVELINEQINLLVNRAPRAIQSIELDLAEVQSLRPLLCKFIPQSTQIRMIA-- 199

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                +   CGGTHV ST E+  L +      +  I+
Sbjct: 200 -IDGFTPVPCGGTHVVSTTELNGLQVTRIKRKKDRIK 235


>gi|121720172|ref|XP_001276784.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
 gi|119404996|gb|EAW15358.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
          Length = 271

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 87/238 (36%), Gaps = 15/238 (6%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ-----ITDVQK 548
           A+    + + +  +     +V +QT F+ + GGQ  D G   G    +        D  +
Sbjct: 32  ALEASNQQLFKQGTDADHVIVTEQTIFHPQGGGQPSDEGHITGPLGAIFTVAAVRMDAVR 91

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
             + +   H      +     ++  TI+   R   S  H+A H+L  A+  +L   V   
Sbjct: 92  NGQVLHFGHFNDTSAVFTEGATVEQTINADKRVFYSRLHTAGHVLGAAVKHLLAKEVEGL 151

Query: 609 GSCITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
                           + +   + K  ++  V+++IA  LPV     + E+    G   L
Sbjct: 152 KELKASHFPESAACEFQGLIDGKWKEPVQRKVDELIAAKLPVQVEWWDEEEFRRRGMERL 211

Query: 668 LGTK----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +  +      ++ RVV++   D        CGGTHV +T +     +   +      +
Sbjct: 212 IPDQSLVAPGEKFRVVNIVGADVY-----PCGGTHVDTTDQCGTTTVRKITRKTGNSK 264


>gi|134296462|ref|YP_001120197.1| metal-dependent hydrolase-like protein [Burkholderia vietnamiensis
           G4]
 gi|134139619|gb|ABO55362.1| Ala-tRNA(Pro) hydrolase [Burkholderia vietnamiensis G4]
          Length = 243

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 75/249 (30%), Gaps = 35/249 (14%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               ++V A+   G             +  D+T FY   GGQ GD G             
Sbjct: 14  TRCEAVVAAVGDDG-------------IRLDRTVFYPLGGGQAGDAGTLTLPDGGTIAIA 60

Query: 546 VQKKAEGIFVHHAIVERGILR----------TEMSLVLTIDYQNRRQLSINHSATHLLHH 595
              KA                              +V  ID+  R +    H+A HL+  
Sbjct: 61  DTHKARFDGATPDDAVHVPAPGQEARIAALRPGARVVADIDWARRYRHMRLHTAAHLMCA 120

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L          +G  +T D +R D   S  I  A+++     +                
Sbjct: 121 VLPY------PVDGCSVTADYVRLDFATSDAIERADVEQRLAALVHGAHAVTTEWITDAE 174

Query: 656 REDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             +         +       RVR++ +E  D        CGGTHV +T E+  L +    
Sbjct: 175 MAERPELVRTMSVKPPMGLGRVRLLRIEGVD-----LQPCGGTHVRNTAEVGALRVAKLE 229

Query: 715 SIRAGIRRI 723
              A  RR+
Sbjct: 230 KKSARTRRV 238


>gi|161524176|ref|YP_001579188.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia multivorans ATCC
           17616]
 gi|189351067|ref|YP_001946695.1| putative metal-dependent hydrolase [Burkholderia multivorans ATCC
           17616]
 gi|160341605|gb|ABX14691.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia multivorans ATCC
           17616]
 gi|189335089|dbj|BAG44159.1| predicted metal-dependent hydrolase [Burkholderia multivorans ATCC
           17616]
          Length = 243

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 85/249 (34%), Gaps = 34/249 (13%)

Query: 494 AIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
           A+ +    +    +     G    +  D+T FY   GGQ GD G               +
Sbjct: 5   ALFRDDAYLAHCEAIVEAVGDDG-IRLDRTVFYPLGGGQAGDAGTLTLPDGSTIAIADTR 63

Query: 549 KAEGIFVHHAIVERGILR----------TEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           KA+                             +V TID+  R +    H+A HL+   L 
Sbjct: 64  KAKFDGATPDDALHVPAPGQDADVAALAPGTRVVATIDWARRYRHMRLHTAAHLMCAVLP 123

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +      +G  +T D +R D   S  I   +++     +   +    PV T  +  E+
Sbjct: 124 YAV------DGCSVTADYVRLDFATSDAIDRDDVERRLAEL---VRGAHPVTTEWITDEE 174

Query: 659 AIASGAAALLGTKYND----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             A        +        RVR++ ++  D        CGGTHV +T EI  L +    
Sbjct: 175 MAARPELVRTMSVKPPMGLGRVRLLRIDGVD-----LQPCGGTHVRNTSEIGALRVAKLE 229

Query: 715 SIRAGIRRI 723
              A  RR+
Sbjct: 230 KKSARTRRL 238


>gi|115352367|ref|YP_774206.1| threonyl/alanyl tRNA synthetase, SAD [Burkholderia ambifaria AMMD]
 gi|115282355|gb|ABI87872.1| Ala-tRNA(Pro) hydrolase [Burkholderia ambifaria AMMD]
          Length = 243

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 74/230 (32%), Gaps = 23/230 (10%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A  G    +  D+T FY   GGQ GDTG               +KA+             
Sbjct: 21  AAVGDDG-IRLDRTVFYPLGGGQAGDTGMLTLPDGGTIAIADTRKAKFDGATPDDAVHVP 79

Query: 565 LR----------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                           +V  ID+Q R +    H+A HL+   L          +G  +T 
Sbjct: 80  APGQEARVAALAPGARVVAGIDWQRRYRHMRLHTAAHLMCAVLPY------PVDGCSVTS 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN- 673
           D +R D   S  I  A+++     +                  +         +      
Sbjct: 134 DYVRLDFATSDAIDRADVERRLAELVSGAHAVTTEWITDAEMTERPELVRTMSVKPPMGL 193

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            RVR++ +   D        CGGTHV +T EI  L +       A  RR+
Sbjct: 194 GRVRLLRIAGVD-----LQPCGGTHVRNTSEIGDLRVAKLEKKSARTRRV 238


>gi|207725304|ref|YP_002255700.1| threonyl/alanyl trna synthetase protein [Ralstonia solanacearum
           MolK2]
 gi|206590539|emb|CAQ37501.1| threonyl/alanyl trna synthetase protein [Ralstonia solanacearum
           MolK2]
          Length = 239

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 80/217 (36%), Gaps = 17/217 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVER---GILRTE 568
           V  DQT FYA +GGQ GD G  +      + I D    A+   + H   +    G+L   
Sbjct: 28  VELDQTVFYARSGGQAGDAGTLVLPDGQTVAIADTVYSADRQTILHVPADPADLGLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +   
Sbjct: 88  VPVSAAIDWARRYRLMRLHTCLHLLGALI------PVPVTGCGISPDAGRIDFDLPESTL 141

Query: 629 SAEL--KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
             E     +   +       + ++T             A          +R+V ++  D 
Sbjct: 142 ERETLTAQLNALIERDTPVRIDLITPEALSAQPELVRTAGAAPPAGMAAIRIVEIKGID- 200

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  CGGTHV +TGEI  + +          RR+
Sbjct: 201 ----RQPCGGTHVRATGEIGPVLVTRIEKKSRQNRRV 233


>gi|302348165|ref|YP_003815803.1| Threonyl/alanyl tRNA synthetase, SAD [Acidilobus saccharovorans
           345-15]
 gi|302328577|gb|ADL18772.1| Threonyl/alanyl tRNA synthetase, SAD [Acidilobus saccharovorans
           345-15]
          Length = 248

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 9/239 (3%)

Query: 492 VKAIVQQGEIVEE----AVSGQKVEVVFDQTPFYA-EAGGQLGDTGCAIGDGIRLQITDV 546
           V+ + Q+   V+E         + ++  D T F+   +GG   DTG  +          V
Sbjct: 2   VRLLYQEDSYVKEFEATVTRVDQNKIYLDATAFHPGPSGGLDADTGLLVLPSGSTVR-VV 60

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
               +G  V H       L     +   +D++ R  +   H+A+H+L   L    G+ ++
Sbjct: 61  NVIEDGDDVAHITEAPVQLSPGDKVKGVLDWERRYSMMRLHTASHVLAAVLYNKYGAKIT 120

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
                       FD++  +      + +  D  N+++++ + V    + R+ A+      
Sbjct: 121 GGHIKPDEAQDDFDLSGVENW-RQAILTAVDEANNVLSRCIDVKVYWLERDRALQIPGIV 179

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            L  +    V  + +    G        G  HV +T E+  + +VS  +     +R+  
Sbjct: 180 KLAGRLPPAVDKLRIVEIPGVD--IQADGAPHVKNTCEVGHIEVVSVENRGKTRKRVYY 236


>gi|47157012|gb|AAT12378.1| alanyl-tRNA synthetase [Antonospora locustae]
          Length = 208

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 19/151 (12%)

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG HV  T EIM + I+SE+ +  G RRI A+TG+ A          ++       V  
Sbjct: 1   CGGVHVKKTSEIMRIRIISENGVSLGTRRIVALTGEAALKAEEDAKRLIECATMESAVPT 60

Query: 754 GNVVG------------------RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             +V                   RV+ I E+ ++   I  + K +  + D          
Sbjct: 61  IPLVEKRQIERIKEARAIEQDARRVKAIVEQLKRANEIVLQIKTKTLMADSKERTFVSFE 120

Query: 796 FMSHIISEVDS-KELKSVMDALQKKIQSGII 825
             S  +S  D  K+++ VMD  +K   +GI 
Sbjct: 121 CDSSALSSKDIKKQVRKVMDIFEKNNINGIA 151


>gi|83745752|ref|ZP_00942809.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Ralstonia solanacearum UW551]
 gi|207743664|ref|YP_002260056.1| threonyl/alanyl trna synthetase protein [Ralstonia solanacearum
           IPO1609]
 gi|83727442|gb|EAP74563.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Ralstonia solanacearum UW551]
 gi|206595063|emb|CAQ61990.1| threonyl/alanyl trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 239

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 80/217 (36%), Gaps = 17/217 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVER---GILRTE 568
           V  DQT FYA +GGQ GD G  +      + I D    A+   + H   +    G+L   
Sbjct: 28  VELDQTVFYARSGGQAGDAGTLVLPDGQTVAIADTVYSADRQTILHVPADPADLGLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +   
Sbjct: 88  VPVSAAIDWARRYRLMRLHTCLHLLGALI------PVPVTGCGISPDAGRIDFDLPESTL 141

Query: 629 SAEL--KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
             E     +   +       + ++T             A          +R+V +E  D 
Sbjct: 142 ERETLTAQLNALIERDTPVRIDLITPEALSAQPALVRTAGAAPPAGMAAIRIVEIEGVD- 200

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  CGGTHV +TGEI  + +          RR+
Sbjct: 201 ----RQPCGGTHVRATGEIGPVLVTRIEKKSRQNRRV 233


>gi|284992198|ref|YP_003410752.1| Threonyl/alanyl tRNA synthetase SAD [Geodermatophilus obscurus DSM
           43160]
 gi|284065443|gb|ADB76381.1| Threonyl/alanyl tRNA synthetase SAD [Geodermatophilus obscurus DSM
           43160]
          Length = 246

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 14/223 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             +  +  VV D++ FY   GGQ  D G  +  G+R +I    +K + +++     +   
Sbjct: 29  VAADPEQGVVLDRSAFYPGGGGQPPDEGVLLWGGVRTRIAGT-RKGDELYLIPVEGDPVP 87

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                ++   +D + R  L   HS  H+L   +    G+ V+          + FD+   
Sbjct: 88  P-PGTAVRGALDDERRTALMRTHSGLHVLTGVVLRDFGAKVTGGNMEPLTARMDFDLA-- 144

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY----NDRVRVVS 680
             + +     + + VN  IA +  +  R + R +A A        T       + VR+V 
Sbjct: 145 -EVPADFKDRVAEAVNAEIAADRRIEVRTLPRAEAYAIPDLIRTATDLLPPDIEEVRIVD 203

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +   D         GGTHV+ST  +  + +V   +   G RR+
Sbjct: 204 IVGLD-----LQADGGTHVASTAMVGRVEVVKMENKGRGFRRL 241


>gi|171321067|ref|ZP_02910049.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria MEX-5]
 gi|171093659|gb|EDT38811.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria MEX-5]
          Length = 243

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 74/230 (32%), Gaps = 23/230 (10%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A  G    +  D+T FY   GGQ GD+G               +KA+             
Sbjct: 21  AAVGDDG-IRLDRTVFYPLGGGQAGDSGMLTLPDGGTIAIADTRKAKFDGATPDDAVHVP 79

Query: 565 LR----------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                           +V  ID+Q R +    H+A HL+   L          +G  +T 
Sbjct: 80  APGQEARVAALAPGARVVAGIDWQRRYRHMRLHTAAHLMCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN- 673
           D +R D   S  I  A+++     +                  +         +      
Sbjct: 134 DYVRLDFATSDAIDRADVERRLAELVRGAHAVTTEWITDAEMTERPELVRTMSVKPPMGL 193

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            RVR++ +   D        CGGTHV +T EI  L +       A  RR+
Sbjct: 194 GRVRLLRIAGVD-----LQPCGGTHVRNTSEIGDLRVAKLEKKSARTRRV 238


>gi|187927944|ref|YP_001898431.1| Threonyl/alanyl tRNA synthetase SAD [Ralstonia pickettii 12J]
 gi|187724834|gb|ACD25999.1| Threonyl/alanyl tRNA synthetase SAD [Ralstonia pickettii 12J]
          Length = 239

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 81/217 (37%), Gaps = 17/217 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERG---ILRTE 568
           +  D T FYA +GGQ GDTG  +      ++I D     +   V H   +     +L   
Sbjct: 28  IELDATVFYARSGGQAGDTGTLVLADGTTIRIADTVYSPDRQTVLHVPADNAGLTLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD--GLRFDVTHSKP 626
            ++  TID+  R +L   H+  HLL   +       V   G  I+PD   + FD+  S  
Sbjct: 88  TAVTATIDWDRRHRLMRLHTCLHLLGSLI------PVPVTGCGISPDAGRIDFDLPESTL 141

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
                   + + +       + ++T                        +R++ ++  D 
Sbjct: 142 DRDTLTTQLNELIGRNTPVRIDLITPEELAAQPELVRTIGAAPPAGASAIRIIHIDGID- 200

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  CGGTHV +TGEI  + +          RR+
Sbjct: 201 ----RQPCGGTHVRATGEIGRVIVTKIEKKSRQNRRV 233


>gi|221211703|ref|ZP_03584682.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD1]
 gi|221169064|gb|EEE01532.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD1]
          Length = 243

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 85/249 (34%), Gaps = 34/249 (13%)

Query: 494 AIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
           A+ +    +    +     G    +  D+T FY   GGQ GD G               +
Sbjct: 5   ALFRDDAYLAHCEAIVEAVGDDG-IRLDRTVFYPLGGGQAGDAGTLTLPDGSTIAIADTR 63

Query: 549 KAEGIFVHHAIVERGILR----------TEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           KA+                             ++ TID+  R +    H+A HL+   L 
Sbjct: 64  KAKFDGATPDDAVHVPAPGQDADVAALAPGTRVIATIDWARRYRHMRLHTAAHLMCAVLP 123

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +      +G  +T D +R D   S  I   +++     +   +    PV T  +  E+
Sbjct: 124 YAV------DGCSVTADYVRLDFATSDAIDRDDVERRLAEL---VRGAHPVTTEWITDEE 174

Query: 659 AIASGAAALLGTKYND----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             A        +        RVR++ ++  D        CGGTHV +T EI  L +    
Sbjct: 175 MAARPELVRTMSVKPPMGLGRVRLLRIDGVD-----LQPCGGTHVRNTSEIGALRVAKLE 229

Query: 715 SIRAGIRRI 723
              A  RR+
Sbjct: 230 KKSARTRRL 238


>gi|167836018|ref|ZP_02462901.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis MSMB43]
          Length = 243

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 85/233 (36%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI--------RLQITDVQKKAEGIFVH 556
             +  +  +  D+T FY   GGQ GDTG     G         R    D     + + V 
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDTGTLTLAGGATLAVADTRKARFDGATPDDAVHVL 79

Query: 557 HAIVERGILRT--EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                          ++V  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAPLASGVRPGDAVVAEIDWAPRHRRMRLHTASHLLCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D +R D    +PI    +++    +   +    PV T  +  ++  A        +    
Sbjct: 134 DYVRIDFATVEPIDRELVEARLAEL---VGGAHPVTTEWITDDEMAARPELVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVD-----LQPCGGTHVHNTAEIGALRVAKLEKKSARTRRL 238


>gi|218131207|ref|ZP_03460011.1| hypothetical protein BACEGG_02813 [Bacteroides eggerthii DSM 20697]
 gi|217986599|gb|EEC52934.1| hypothetical protein BACEGG_02813 [Bacteroides eggerthii DSM 20697]
          Length = 155

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+  H+++  +  + G       + I     + D   +   T  +
Sbjct: 4   TIQLNEHNKQEYPPMHTCEHIINQTMIRLFGCGR-SVSAHIERKKSKLDYRLTACPTEEQ 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +K++E+ VN II Q+LPV T  + +E+A        L    ++ VRVV V   D      
Sbjct: 63  IKNLENTVNQIIMQHLPVTTEFITQEEAKGRFDLKRLPEDASETVRVVKVGDYDE----- 117

Query: 692 ALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
            LC GTHV++T EI     I  +        RI  
Sbjct: 118 CLCIGTHVANTSEIGTFKIISHDWDGENKRWRIRF 152


>gi|172061237|ref|YP_001808889.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria MC40-6]
 gi|171993754|gb|ACB64673.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria MC40-6]
          Length = 243

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 74/230 (32%), Gaps = 23/230 (10%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A  G    +  D+T FY   GGQ GD+G               +KA+             
Sbjct: 21  AAVGDDG-IRLDRTVFYPLGGGQAGDSGMLTLPDGGTIAIADTRKAKFDGATPDDAVHVP 79

Query: 565 LR----------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                           +V  ID+Q R +    H+A HL+   L          +G  +T 
Sbjct: 80  APGQEARVAALAPGARVVAGIDWQRRYRHMRLHTAAHLMCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN- 673
           D +R D   S  I  A+++     +                  +         +      
Sbjct: 134 DYVRLDFATSDAIDRADVERRLAELVSGAHAVTTEWITDAEMTERPELVRTMSVKPPMGL 193

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            RVR++ +   D        CGGTHV +T EI  L +       A  RR+
Sbjct: 194 GRVRLLRIAGVD-----LQPCGGTHVRNTSEIGDLRVAKLEKKSARTRRV 238


>gi|326480566|gb|EGE04576.1| alanyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 278

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 87/233 (37%), Gaps = 13/233 (5%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI---RLQITDVQKKA 550
           A+ +  + + +  S +   VV ++T F+ + GGQ  D G           +    +    
Sbjct: 29  ALEEANQQLFKQGSEEDHVVVTEKTIFHPQGGGQPSDIGMITSSTGSSFTVASVRMDALQ 88

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           +G  +H             ++   ID + R   S  H+A H+L  A+  ++   V     
Sbjct: 89  DGQVLHLGRFGSSTFAPGETVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKDVEGFEE 148

Query: 611 CITPDGLRFDVTHSKPITSAEL-KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
                         + +   +   SI+D VN+ IA+ +PV     + +D  + G   L+ 
Sbjct: 149 LKASHFPDSAACEFRGLIEGKWKPSIQDKVNEFIAEAMPVEIEWWDEDDFRSRGLERLIP 208

Query: 670 TK----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                   ++ RVV++   +        CGGTHV +T       +   S  + 
Sbjct: 209 DPTLVPPGEKSRVVNIVGAEVY-----PCGGTHVDTTDLCGQTTVKKISRSKG 256


>gi|224023759|ref|ZP_03642125.1| hypothetical protein BACCOPRO_00475 [Bacteroides coprophilus DSM
           18228]
 gi|224016981|gb|EEF74993.1| hypothetical protein BACCOPRO_00475 [Bacteroides coprophilus DSM
           18228]
          Length = 153

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ++  N+++    H+  H+++  +  + G       + I     + D   S+  T  E
Sbjct: 4   QPQLNEHNKQEYPPMHTCEHIVNRTMVNLFGCGR-AVSAHIERKKSKLDFALSQAPTDEE 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++ IE  VN++IA++L V  + +++++A        L    +D VRVVSV   D      
Sbjct: 63  IEQIEAKVNEVIARHLDVTVKFISQQEAAGQFDLKRLPEGASDTVRVVSVGDYDD----- 117

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            LC GTHV++T EI    I+S    + GI R+  
Sbjct: 118 CLCIGTHVANTSEIGTFKIISH-DYKDGIFRMRF 150


>gi|221199625|ref|ZP_03572669.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD2M]
 gi|221205475|ref|ZP_03578490.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD2]
 gi|221174313|gb|EEE06745.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD2]
 gi|221180910|gb|EEE13313.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD2M]
          Length = 243

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 87/249 (34%), Gaps = 34/249 (13%)

Query: 494 AIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI--------R 540
           A+ +    +    +     G    +  D+T FY   GGQ GD G               R
Sbjct: 5   ALFRDDAYLAHCEAIVEAVGDDG-IRLDRTVFYPLGGGQAGDAGTLTLPDGGTIAIADTR 63

Query: 541 LQITDVQKKAEGIFVHHAIV--ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               D     + + V           L     +V TID+  R +    H+A HL+   L 
Sbjct: 64  KAKFDGATPDDAVHVPAPGQDAHVAALAPGTRVVATIDWVRRYRHMRLHTAAHLMCAVLP 123

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +      +G  +T D +R D   S  I   +++     +   +    PV T  +  E+
Sbjct: 124 YAV------DGCSVTADYVRLDFATSDAIDRDDVERRLAEL---VRGAHPVTTEWITDEE 174

Query: 659 AIASGAAALLGTKYND----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             A        +        RVR++ ++  D        CGGTHV +T EI  L +    
Sbjct: 175 MAARPELVRTMSVKPPMGLGRVRLLRIDGVD-----LQPCGGTHVRNTSEIGALRVAKLE 229

Query: 715 SIRAGIRRI 723
              A  RR+
Sbjct: 230 KKSARTRRL 238


>gi|170702117|ref|ZP_02893028.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria
           IOP40-10]
 gi|170132966|gb|EDT01383.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria
           IOP40-10]
          Length = 243

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 73/230 (31%), Gaps = 23/230 (10%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A  G    +  D+T FY   GGQ GD+G               +KA+             
Sbjct: 21  AAVGDDG-IRLDRTVFYPLGGGQAGDSGMLTLPDGGTIAIADTRKAKFDGATPDDAVHVP 79

Query: 565 LR----------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                           +V  ID+  R +    H+A HL+   L          +G  +T 
Sbjct: 80  APGQEARVAALAPGARVVAGIDWLRRYRHMRLHTAAHLMCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN- 673
           D +R D   S  I  A+++     +                  +         +      
Sbjct: 134 DYVRLDFATSDAIDRADVERRLAELVRGAHAVTTEWITDAEMTERPELVRTMSVKPPMGL 193

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            RVR++ +   D        CGGTHV +T EI  L +       A  RR+
Sbjct: 194 GRVRLLRIAGVD-----LQPCGGTHVHNTSEIGDLRVAKLEKKSARTRRV 238


>gi|257095480|ref|YP_003169121.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048004|gb|ACV37192.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 245

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 83/225 (36%), Gaps = 24/225 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI---- 564
            +  V  ++T FY   GGQ GD G  I            +K         +   G     
Sbjct: 23  DERGVQLERTIFYPLGGGQAGDRGALILPDGSDLQIADTRKGAQAGEILHVPAAGQEARL 82

Query: 565 --LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             +     +   +D   R++    H+ THLL   +          NG  IT D  R D  
Sbjct: 83  AQISIGQIVHARLDAHRRQRHMRFHTTTHLLCALIPH------PVNGCSITCDYARLDFH 136

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRV 678
            ++P+    L +    +   + +  PV  R +   +  A+       ++   +   RVRV
Sbjct: 137 MAEPLDKEALTAGLARL---VGEARPVRQRWIAESELDANPGLVRSMSVQPPRGLGRVRV 193

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           + +E  D        CGGTHVS+T EI  + +       A  RR+
Sbjct: 194 IEIEGVD-----LQPCGGTHVSNTAEIGAVVVTRIEKKSAMTRRV 233


>gi|331695255|ref|YP_004331494.1| Threonyl/alanyl tRNA synthetase SAD [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949944|gb|AEA23641.1| Threonyl/alanyl tRNA synthetase SAD [Pseudonocardia dioxanivorans
           CB1190]
          Length = 247

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 6/214 (2%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V D++ FY   GGQ  D G  +  G+R +I     + + +++  A  +     T  
Sbjct: 35  ERGIVLDRSAFYPGGGGQPPDEGVLLWGGVRTRIVGT-VRGDDLYLVPAEGDPVPA-TGT 92

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++   ID + R  L   HS  H+L   +    G+ V+  G  + P   R D    + +  
Sbjct: 93  AVRGAIDDERRTGLMRTHSGLHVLTAVVFRDFGAKVT--GGNMEPLTARMDFDLPQ-VPP 149

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
                + +  N  IA + P+  R++ R +A A                + ++   D    
Sbjct: 150 DFKDRVAEAANAEIALDRPIAARLLPRAEAFAIPNLVRTAADLLPE-DLETIRVVDIDGL 208

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                GGTHV+ST  I  + +V   +   G RR+
Sbjct: 209 DQQADGGTHVASTKLIGRVEVVKVENKGRGFRRL 242


>gi|238507095|ref|XP_002384749.1| alanyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
 gi|220689462|gb|EED45813.1| alanyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
          Length = 270

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 76/232 (32%), Gaps = 15/232 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAIVE 561
           A +     V  ++T F+ + GGQ  D G   G       +    +    +G  +H     
Sbjct: 43  AGNDDDHVVATEKTIFHPQGGGQPSDVGTMTGPAGTTFTVTAVRMDATGQGQVLHLGRFG 102

Query: 562 RGILR---TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            G         ++   +D + R   S  H+A H+L  A+  +L   V             
Sbjct: 103 DGSCSAFSKGETVRQEVDAEKRLLHSRLHTAGHVLGAAVRHLLEKEVQDFDELKASHAPG 162

Query: 619 FDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT---KYND 674
                 + +   + K  I+  V+  IA    V     +       G   L+        +
Sbjct: 163 SASCEFQGLIEGKWKEPIQKRVDQYIADKREVRVEWWDETMFREKGLERLIPDRSLMPGE 222

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           + RVV++   +        CGGTHV +T       +   S      R   A+
Sbjct: 223 KFRVVNIVGAEVY-----PCGGTHVDTTDLCGPTSVTKISRKSGKSRVSYAV 269


>gi|309781113|ref|ZP_07675851.1| threonyl and alanyl tRNA synthetase domain protein [Ralstonia sp.
           5_7_47FAA]
 gi|308920179|gb|EFP65838.1| threonyl and alanyl tRNA synthetase domain protein [Ralstonia sp.
           5_7_47FAA]
          Length = 239

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 86/250 (34%), Gaps = 30/250 (12%)

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V A+  +G             +  D T FYA +GGQ GDTG  +    
Sbjct: 8   DEDAYRTTCDATVVALHPEG-------------IELDATVFYARSGGQAGDTGTLVLADG 54

Query: 540 R-LQITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             + I D     +   V H   +     +L    ++  TID+  R +L   H+  HLL  
Sbjct: 55  TTIAIADTVYSPDRQTVLHVPADNAGLTLLAPGTAITATIDWDRRHRLMRLHTCLHLLGS 114

Query: 596 ALSTILGSHVSQNGSCITPD--GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
            +       V   G  I+PD   + FD+  S          + + +       + ++T  
Sbjct: 115 LI------PVPVTGCGISPDAGRIDFDLPESTLDRDTLTTQLNELIGRNTPVRIDLITPE 168

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
                                 +R++ ++  D        CGGTHV +TGEI  + +   
Sbjct: 169 ELPAQPELVRTIGAAPPAGASAIRIIHIDGID-----RQPCGGTHVRATGEIGRVIVTKI 223

Query: 714 SSIRAGIRRI 723
                  RR+
Sbjct: 224 EKKSRQNRRV 233


>gi|148908305|gb|ABR17266.1| unknown [Picea sitchensis]
          Length = 258

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 79/238 (33%), Gaps = 15/238 (6%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            +     G+++ V+ D T  Y + GGQ  D G       RL+      ++    V H   
Sbjct: 27  FISMVADGERLAVIVDSTILYPQGGGQPADIGFIYDLDERLKFRVQDVRSRNGVVFHYGY 86

Query: 561 ERGI------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                      +    ++L++D   R   S  HSA HLL   +  I  + +        P
Sbjct: 87  FDSPLSEQSTFQKGQEVILSVDEHRRGLNSRLHSAGHLLDVCMHNIGLASLESGKGHHFP 146

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR---IMNREDAIASGAAALLGTK 671
           DG   +     P    E K            ++        +     A   G        
Sbjct: 147 DGAFVEYKGKIPADDLERKREALEKEAKRLVSIGGKVSAAIVPYESAAALCGGELPEYIP 206

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            +   R+V +    G       CGGTHV+   +I ++ +     +R G+ ++    G 
Sbjct: 207 KDTTPRIVMLGDNLG-----CPCGGTHVADISDIGIIKVSQI-RVRKGLTKVSYTIGP 258


>gi|241662530|ref|YP_002980890.1| threonyl/alanyl tRNA synthetase SAD [Ralstonia pickettii 12D]
 gi|240864557|gb|ACS62218.1| Threonyl/alanyl tRNA synthetase SAD [Ralstonia pickettii 12D]
          Length = 239

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 86/250 (34%), Gaps = 30/250 (12%)

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V A+  +G             +  D T FYA +GGQ GDTG  +    
Sbjct: 8   DEDAYRTTCDATVVALHPEG-------------IELDATVFYARSGGQAGDTGTLVLADG 54

Query: 540 R-LQITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             + I D     +   V H   +     +L    ++  TID+  R +L   H+  HLL  
Sbjct: 55  TTMAIADTVYSPDRQTVLHVPADNAGLTLLAPGTAVTATIDWDRRHRLMRLHTCLHLLGS 114

Query: 596 ALSTILGSHVSQNGSCITPD--GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
            +       V   G  I+PD   + FD+  S          + + +       + ++T  
Sbjct: 115 LI------PVPVTGCGISPDAGRIDFDLPESTLDRDTLTAQLNELIGRNTPVRIDLITPE 168

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
                                 +R++ ++  D        CGGTHV +TGEI  + +   
Sbjct: 169 ELAAQPELVRTIGAAPPAGTSAIRIIHIDGID-----RQPCGGTHVRATGEIGRVIVTKI 223

Query: 714 SSIRAGIRRI 723
                  RR+
Sbjct: 224 EKKSRQNRRV 233


>gi|265764262|ref|ZP_06092830.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|263256870|gb|EEZ28216.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16]
          Length = 154

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ++  N+++    H+A HLL+  +    G   S+N + I     + D       T  +
Sbjct: 4   QPQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIEKKKSKCDYELPTCPTEEQ 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           + +IE+ VN+ I ++LPV    M  E+A +    + L    ++ +R+V +   D      
Sbjct: 63  IHAIEEKVNEAIDRHLPVTCEFMTHEEAKSIVDLSKLPENASETLRIVRIGDYDA----- 117

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             C G HV +T EI L  I+S         R+  
Sbjct: 118 CACIGQHVENTSEIGLFKIIS-YDYADEKLRLRF 150


>gi|325298491|ref|YP_004258408.1| Threonyl/alanyl tRNA synthetase SAD [Bacteroides salanitronis DSM
           18170]
 gi|324318044|gb|ADY35935.1| Threonyl/alanyl tRNA synthetase SAD [Bacteroides salanitronis DSM
           18170]
          Length = 152

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ++  N+ +    H+  H+++  +  + G       + I     + D    +  +  +
Sbjct: 3   TPQLNEHNKTEYPPMHTCEHIVNRTMVNLFGCGR-AVSAHIERKKSKLDFALPQAPSPED 61

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  IE  VN+ IA++LPV T  + +++A+       L    +D VR+V V   D      
Sbjct: 62  IARIEAQVNETIARHLPVTTEFITQQEALGRFDLKRLPEGASDTVRIVKVGDYDE----- 116

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            LC G HV++T EI    I+S S  + GI R+  
Sbjct: 117 CLCIGLHVANTSEIGTFKIIS-SDYKDGIFRMRF 149


>gi|126452703|ref|YP_001065542.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia pseudomallei 1106a]
 gi|167844963|ref|ZP_02470471.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei B7210]
 gi|242315528|ref|ZP_04814544.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106b]
 gi|126226345|gb|ABN89885.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106a]
 gi|242138767|gb|EES25169.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106b]
          Length = 243

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE----------GIF 554
             +  +  +  D+T FY   GGQ GD+G     G         +KA+           + 
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                     ++   +LV  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAALAASVKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D +R D    +PI       ++  + +++    PV T  +  ++ +A        +    
Sbjct: 134 DYVRIDFATVEPIDRE---HVQARLGELVDGAHPVTTEWITDDEMVARPELVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVD-----LQPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|167569390|ref|ZP_02362264.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           oklahomensis C6786]
          Length = 243

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 85/233 (36%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK-------AEGIFVHH 557
             +  +  +  D+T FY   GGQ GD+G     G         +K        +      
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDSGMLTLPGGATLAVADTRKAKFEGATPDDAVHVL 79

Query: 558 AIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           A  +  +   ++   ++V  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQEALAAGVKPGDAVVAEIDWTPRHRRMRLHTASHLLCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D  R D    +PI  A + +    +   +    PV T  +  ++           +    
Sbjct: 134 DYARIDFATVEPIDRAFVDARLAEL---VGGAHPVTTEWITDDEMAERPDLVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +   D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIGGID-----LQPCGGTHVRNTAEIGGLRVAKLEKKSARTRRL 238


>gi|167562141|ref|ZP_02355057.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           oklahomensis EO147]
          Length = 243

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 85/233 (36%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK-------AEGIFVHH 557
             +  +  +  D+T FY   GGQ GD+G     G         +K        +      
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDSGMLTLPGGATLAVADTRKAKFEGATPDDAVHVL 79

Query: 558 AIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           A  +  +   ++   ++V  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQEALAAGVKPGDAVVAEIDWTPRHRRMRLHTASHLLCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D  R D    +PI  A + +    +   +    PV T  +  ++           +    
Sbjct: 134 DYARIDFATVEPIDRAFVDARLAEL---VGGAHPVTTEWITDDEMAERPDLVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +   D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIGGID-----LQPCGGTHVRNTAEIGGLRVAKLEKKSARTRRL 238


>gi|121607368|ref|YP_995175.1| threonyl/alanyl tRNA synthetase, SAD [Verminephrobacter eiseniae
           EF01-2]
 gi|121552008|gb|ABM56157.1| Ala-tRNA(Pro) hydrolase [Verminephrobacter eiseniae EF01-2]
          Length = 252

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 88/251 (35%), Gaps = 32/251 (12%)

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
             S+ + A+   G             +V D+T FY + GGQ GD+G  +           
Sbjct: 14  ECSAQITAVTADGA------------IVLDRTVFYPQGGGQAGDSGLLLRADGSSITIAD 61

Query: 547 QKKAEGI-------FVHHA----IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +K +          VH                 ++   I ++ R ++   H+ THLL H
Sbjct: 62  TRKGKDAQGHATADIVHIPAPGQQDRMAQWTPGTAVTARIAWERRHRMMRLHTTTHLLCH 121

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            +  ++      NG  ITPD  R D   + P+    L +    +                
Sbjct: 122 LVPHLV------NGCSITPDYARLDFAITDPLDKQALNTGIAALVAAAHPLTVASISDAE 175

Query: 656 REDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVS 712
            +   A   + ++   +   R+R + +  +           CGGTHV++T EI  + +  
Sbjct: 176 LDANPALVKSMSVQPPRGTGRIRTIRIGGQSASAALIDLQPCGGTHVANTAEIGAIVVTK 235

Query: 713 ESSIRAGIRRI 723
                A  RR+
Sbjct: 236 IEKKSATTRRV 246


>gi|296161665|ref|ZP_06844469.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia sp. Ch1-1]
 gi|295888142|gb|EFG67956.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia sp. Ch1-1]
          Length = 237

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 5/213 (2%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV  ++  +   GGQ+ D          ++IT V  + + ++          L    +
Sbjct: 25  GAVVLGRSALHPGGGGQVSDAATLTHAHGAVRITGVAAEGDVLWHLL----DEPLELSGN 80

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + ID   R  ++  H+ATH+L+  +       +            R D         A
Sbjct: 81  VQVAIDAARRATVAQLHTATHILNALVYQRFAGALVTGAQINADGTARMDFDLPDADNDA 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L+ +E+  N++I   + V    ++  +A A+       +         +V   + G   
Sbjct: 141 -LRLLEEPANEVIRNAMEVRVYYVSAAEAKATQGLIRSLSVAPPPTPDGTVRIVEIGDLD 199

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              CGGTH+++T +   + I    +     RR+
Sbjct: 200 RQACGGTHLTNTAQSRPIRIAKIENKGRRNRRV 232


>gi|91777811|ref|YP_553019.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Burkholderia xenovorans LB400]
 gi|91690471|gb|ABE33669.1| Ala-tRNA(Pro) hydrolase [Burkholderia xenovorans LB400]
          Length = 237

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 5/213 (2%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV  ++  +   GGQ+ D          ++IT V  + + ++          L    +
Sbjct: 25  GAVVLGRSALHPGGGGQVSDAATLTHAHGAVRITGVAAEGDVLWHLL----DEPLELAGN 80

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + ID   R  ++  H+ATH+L+  +       +            R D         A
Sbjct: 81  VHVAIDAARRATVAQLHTATHILNALVYQRFAGALVTGAQINADGTARMDFDLPDADNDA 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L+ +E+  N++I   + V    ++  +A A+       +         +V   + G   
Sbjct: 141 -LRLLEEPANEVIRNAMEVRVYYVSAAEAKATQGLIRSLSVAPPPTPDGTVRIVEIGDLD 199

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              CGGTH+++T +   + I    +     RR+
Sbjct: 200 RQACGGTHLTNTAQSRPIRIAKIENKGRRNRRV 232


>gi|229149979|ref|ZP_04278204.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus m1550]
 gi|228633417|gb|EEK90021.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus m1550]
          Length = 142

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 11/145 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             +HS  HL+   +    G+  +  G+ I PD  R D    + ++S E++ I + VN +I
Sbjct: 1   MRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNELQELSSVEVEEIVEEVNKLI 58

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
            QN  + TR M+RE+A  +                 +R+V++E  D        CGGTHV
Sbjct: 59  KQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQEIRIVTIENLDE-----QACGGTHV 113

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIE 724
            +T EI  L I    S     RR E
Sbjct: 114 KNTSEIGTLVIDKVKSKGKQNRRFE 138


>gi|126438986|ref|YP_001058304.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia pseudomallei 668]
 gi|126218479|gb|ABN81985.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 668]
          Length = 243

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK-------AEGIFVHH 557
             +  +  +  D+T FY   GGQ GD+G     G         +K        +      
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 558 AIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           A  +  +   ++   +LV  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAALAAGVKPGDALVAEIDWAPRHRRMRLHTASHLLCAMLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D +R D    +PI    +++    +   +    PV T  +  ++ +A        +    
Sbjct: 134 DYVRIDFATVEPIDREHVQARLAEL---VDGAHPVTTEWITDDEMVARPELVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVD-----LQPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|85111753|ref|XP_964087.1| hypothetical protein NCU00535 [Neurospora crassa OR74A]
 gi|28925852|gb|EAA34851.1| hypothetical protein NCU00535 [Neurospora crassa OR74A]
          Length = 272

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 81/245 (33%), Gaps = 17/245 (6%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK---- 549
           A+ +  +++ +  +     +V DQT F+ + GGQ  D G      + +    + +     
Sbjct: 33  ALEETNKLLFKKGTDNDFAIVTDQTIFHPQGGGQPSDEGVMTMGDVSVFRVSMVRMDAVK 92

Query: 550 --AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
                 F         I +   ++  +ID + R   S  H+A H+L  A+  +L   +  
Sbjct: 93  DGQVLHFGRFDSSSSSIFQLGDTVEQSIDVEKRLLYSRLHTAGHVLGAAVRHLLEKEIPG 152

Query: 608 NGSCITPDG-----LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
                           F  +          + +++ ++  +   +        R++ +  
Sbjct: 153 FDELKASHFPDSAACEFQGSIEGRWKEPIQQKVDEYIDKAMPVEVDFWDEEDFRKNGLER 212

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                      ++ RVV +   +        CGGTHV +T       +   S    G  R
Sbjct: 213 LIPDRSLAPPGEKFRVVKIVGAEVY-----PCGGTHVDTTDLCGKTTVKKISR-SKGTSR 266

Query: 723 IEAIT 727
           +    
Sbjct: 267 VSYAV 271


>gi|260663835|ref|ZP_05864720.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
 gi|260551596|gb|EEX24783.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
          Length = 225

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 716 IRAGIRRIEAI-TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           +  G + + AI TG  A + L    ++LK +A+ L      VV    ++  + + L+   
Sbjct: 59  LPGGTKVLIAIATGLAAMARLKAAHQQLKEVATALSTPPEEVVAAASDLLAKNKALKKQL 118

Query: 775 AKRKLQLNVED-----LSCHKIADVNF 796
                 L  +       S  ++ +V+ 
Sbjct: 119 KAATKALMAQQAAQVLASGQQVNEVHI 145


>gi|184154620|ref|YP_001842960.1| hypothetical protein LAF_0144 [Lactobacillus fermentum IFO 3956]
 gi|183225964|dbj|BAG26480.1| hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 225

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 716 IRAGIRRIEAI-TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           +  G + + AI TG  A + L    ++LK +A+ L      VV    ++  + + L+   
Sbjct: 59  LPGGTKVLIAIATGLAAMARLKAAHQQLKEVATALSTPPEEVVAAASDLLAKNKALKKQL 118

Query: 775 AKRKLQLNVED-----LSCHKIADVNF 796
                 L  +       S  ++ +V+ 
Sbjct: 119 KAATKALMAQQAAQVLASGQQVNEVHI 145


>gi|300692048|ref|YP_003753043.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07]
 gi|299079108|emb|CBJ51771.1| putative Alanyl-tRNA synthetase [Ralstonia solanacearum PSI07]
          Length = 239

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 82/217 (37%), Gaps = 17/217 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVER---GILRTE 568
           +  DQT FYA +GGQ GDTG  +      + I D    A+ + + H   +     +L   
Sbjct: 28  IELDQTVFYARSGGQAGDTGTLVLPDGQTVAIADTLYSADRLSLLHVPTDPADLDLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +   
Sbjct: 88  MPVSAAIDWARRYRLMRLHTCLHLLGALI------PVPVTGCGISPDAGRIDFDLPESTL 141

Query: 629 SAEL--KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
             E     +   ++      + ++T             A          +R+V +E  D 
Sbjct: 142 DRETLTAQLNALIDRDTPVRIDLITPQALAAQPELVRTAGAAPPAGAATIRIVEIEGID- 200

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  CGGTHV +TGEI  + +          RR+
Sbjct: 201 ----RQPCGGTHVRATGEIGRVLVTRIEKKSRQNRRV 233


>gi|189463515|ref|ZP_03012300.1| hypothetical protein BACCOP_04234 [Bacteroides coprocola DSM 17136]
 gi|189429782|gb|EDU98766.1| hypothetical protein BACCOP_04234 [Bacteroides coprocola DSM 17136]
          Length = 153

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 7/148 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+++    H+  H+++  +  I G       + I     + D    K  +  ++++IE 
Sbjct: 10  HNKQEYPPMHTCEHIVNRTMVNIFGCGR-AVSAHIERKKSKLDFALPKAPSVEDIENIEK 68

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN++IA++LPV T  + +E+A+       L    +D VR+V V   D       LC G 
Sbjct: 69  TVNEVIARHLPVTTEFITQEEAVGRFDLKRLPDNASDTVRIVRVGDYDE-----CLCIGL 123

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           HV++T EI    I+S S  + GI RI  
Sbjct: 124 HVTNTSEIGTFRIIS-SDYKDGIFRIRF 150


>gi|254181219|ref|ZP_04887816.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1655]
 gi|184211757|gb|EDU08800.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1655]
          Length = 243

 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK-------AEGIFVHH 557
             +  +  +  D+T FY   GGQ GD+G     G         +K        +      
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 558 AIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           A  +  +   ++   +LV  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAALAAGVKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D +R D    +PI    +++    +   +    PV T  +  ++ +A        +    
Sbjct: 134 DYVRIDFATVEPIDREHVQARLAEL---VDGAHPVTTEWITDDEMVARPELVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVD-----LQPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|218260223|ref|ZP_03475609.1| hypothetical protein PRABACTJOHN_01270 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224675|gb|EEC97325.1| hypothetical protein PRABACTJOHN_01270 [Parabacteroides johnsonii
           DSM 18315]
          Length = 154

 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+ +    H+A H+L+  +  + G   S+N + I     + D    +  T+  
Sbjct: 4   EIQLNEHNKAEYPPMHTAEHILNQTMVRMFGCPRSKN-AHIERKKSKCDYELPEEPTAEI 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  +E  VN++I ++LPV    + + +A      + L    ++ +R+V +   D      
Sbjct: 63  MAEVERRVNEVIDRHLPVTIEFVPKAEAKEIVDLSKLPEDASNTLRIVRIGDYD-----V 117

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             C G HV++T EI    +++      G  R+  
Sbjct: 118 CACIGAHVNNTSEIGHFKMLT-YDYTDGRLRLRF 150


>gi|254251835|ref|ZP_04945153.1| hypothetical protein BDAG_01037 [Burkholderia dolosa AUO158]
 gi|124894444|gb|EAY68324.1| hypothetical protein BDAG_01037 [Burkholderia dolosa AUO158]
          Length = 243

 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 72/236 (30%), Gaps = 25/236 (10%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL----------QITDVQK 548
             IVE         +  D+T FY   GGQ GD+G                          
Sbjct: 17  DAIVEAVGDD---GIRLDRTVFYPLGGGQAGDSGTLTLPDGSTLAIADTRKAKFDGATPD 73

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
            A  +           L     +   ID+  R +    H+A HL+   L          +
Sbjct: 74  DAVHVPAPGQHELVATLARGARVSAAIDWTRRYRHMRLHTAAHLMCAVLPY------PVD 127

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G  +T D +R D   S  I   +++     +                  +         +
Sbjct: 128 GCSVTADYVRLDFATSDAIDRDDVERRLAALVAGAYPVTTEWITDDEMVERPELVRTMSV 187

Query: 669 GTKYN-DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  RVR++ ++  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 188 KPPMGLGRVRLLRIDGVD-----LQPCGGTHVRNTSEIGSLRVAKLEKKSARTRRV 238


>gi|78067074|ref|YP_369843.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Burkholderia sp. 383]
 gi|77967819|gb|ABB09199.1| Ala-tRNA(Pro) hydrolase [Burkholderia sp. 383]
          Length = 243

 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 81/233 (34%), Gaps = 29/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
              G    +  D+T FY   GGQ GDTG               +KA+             
Sbjct: 21  LAVGDDG-IRLDRTVFYPLGGGQAGDTGTLTLPDGSTIAIADTRKAKFDGATPDDAVHVP 79

Query: 565 LR----------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                           +V  ID+  R +    H+A HL+   L   +      +G  +T 
Sbjct: 80  APGQEASVAALVAGTRVVAEIDWLRRYRHMRLHTAAHLMCAVLPYAV------DGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D +R D   S  I   +   +E  +  ++    PV T  +  ++  A        +    
Sbjct: 134 DYVRLDFATSDAIDRDD---VERRLAGLVVGAHPVTTEWITDDEMAARPDLVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEQVD-----LQPCGGTHVRNTSEIGALRVAKLEKKSARTRRL 238


>gi|53718817|ref|YP_107803.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|67642225|ref|ZP_00440985.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|121599376|ref|YP_992436.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia mallei SAVP1]
 gi|124384495|ref|YP_001026760.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia mallei NCTC 10229]
 gi|126448767|ref|YP_001079954.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia mallei NCTC 10247]
 gi|134283926|ref|ZP_01770622.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 305]
 gi|167000948|ref|ZP_02266749.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei PRL-20]
 gi|167718807|ref|ZP_02402043.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei DM98]
 gi|167823415|ref|ZP_02454886.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 9]
 gi|167893507|ref|ZP_02480909.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 7894]
 gi|167901958|ref|ZP_02489163.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|226195349|ref|ZP_03790938.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811549|ref|YP_002896000.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|254175671|ref|ZP_04882331.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei ATCC 10399]
 gi|254202143|ref|ZP_04908506.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei FMH]
 gi|254207471|ref|ZP_04913821.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei JHU]
 gi|254298500|ref|ZP_04965952.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 406e]
 gi|254359890|ref|ZP_04976160.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei 2002721280]
 gi|52209231|emb|CAH35176.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|121228186|gb|ABM50704.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei SAVP1]
 gi|124292515|gb|ABN01784.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei NCTC 10229]
 gi|126241637|gb|ABO04730.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei NCTC 10247]
 gi|134244715|gb|EBA44813.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 305]
 gi|147746390|gb|EDK53467.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei FMH]
 gi|147751365|gb|EDK58432.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei JHU]
 gi|148029130|gb|EDK87035.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei 2002721280]
 gi|157808398|gb|EDO85568.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 406e]
 gi|160696715|gb|EDP86685.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei ATCC 10399]
 gi|225932551|gb|EEH28549.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506122|gb|ACQ98440.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|238523324|gb|EEP86763.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|243063247|gb|EES45433.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei PRL-20]
          Length = 243

 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK-------AEGIFVHH 557
             +  +  +  D+T FY   GGQ GD+G     G         +K        +      
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 558 AIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           A  +  +   ++   +LV  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAALAAGVKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D +R D    +PI    +++    +   +    PV T  +  ++ +A        +    
Sbjct: 134 DYVRIDFATVEPIDREHVQARLAEL---VGGAHPVTTEWITDDEMVARPELVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVD-----LQPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|148256966|ref|YP_001241551.1| putative alanyl-tRNA synthetase-like protein [Bradyrhizobium sp.
           BTAi1]
 gi|146409139|gb|ABQ37645.1| putative alanyl-tRNA synthetase related protein [Bradyrhizobium sp.
           BTAi1]
          Length = 243

 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 5/213 (2%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+  ++PFY   GGQL D G    +GI  ++   +  A+G++             E+ 
Sbjct: 29  GAVLLARSPFYPGGGGQLPDRGTIAWNGIVREVVGFEVTADGLWHLIGDDAIPDGMIELR 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +        R+++   H+  HL++ A+ T+    +         D    D    K +   
Sbjct: 89  VDQAF----RQRMCEQHTVAHLVNSAVYTLFDGALLTGVRMTETDEFSVDFDLPK-VAPE 143

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L++++D VN  IA + PV T  M+ + A  +       +    R     +   D     
Sbjct: 144 QLRAVQDAVNTAIADDRPVRTFDMDYDTAQTTAGLFRAKSVAPPRQADGLIRIVDIDGLD 203

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              CGGTH++ST     + I+   +     RR+
Sbjct: 204 RQACGGTHLASTARARRIRILKVDNKGRQNRRL 236


>gi|325068846|ref|ZP_08127519.1| alanyl-tRNA synthetase [Actinomyces oris K20]
          Length = 129

 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVGIS 831
             A    +         ++ ++   S  +  V  +  ++S++   + ++      +V + 
Sbjct: 1   EQAALSARTAGIVSDAVRLGEIRLASADLGTVGSADAVRSLVLDARSRLGEAEPAVVAVG 60

Query: 832 KEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               +  ++VV  +   R     A  L R +A+VLGGGGGG +  +AQ GG N    D+A
Sbjct: 61  AVVGSRPVVVVATNAGARDQGIRAGALVRTAAQVLGGGGGG-KDDLAQGGGQNPQALDEA 119

Query: 889 IAGVASFLK 897
           +  VA  ++
Sbjct: 120 LRAVAEQIQ 128


>gi|146342087|ref|YP_001207135.1| putative alanyl-tRNA synthetase-like protein [Bradyrhizobium sp.
           ORS278]
 gi|146194893|emb|CAL78918.1| putative alanyl-tRNA synthetase related protein [Bradyrhizobium sp.
           ORS278]
          Length = 243

 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 5/213 (2%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+  ++PFY   GGQL D G    +GI   +T  +  ++G++              + 
Sbjct: 29  GAVLLSRSPFYPGGGGQLPDRGTIAWNGIVRDVTGFEPTSDGLWHQFGDDAVPWGTITLR 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +        R+++   H+  HL++ A+ T+    +         D    D    K +   
Sbjct: 89  VDAAF----RQRMCEQHTVAHLVNSAVYTLFDGALLTGVRMTDTDEFSVDFDLPK-VAPE 143

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L+++ED VN  I+   PV    M  +DA A+       +    R     +   D     
Sbjct: 144 QLRAVEDAVNAAISDGRPVRAFDMPYDDAQATAGLFRAKSVAPPRQADGMIRIVDIDGLD 203

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              CGGTH+ ST +   + I+   +     RR 
Sbjct: 204 RQACGGTHLVSTAQARRIRILKVDNKGRQNRRF 236


>gi|302883070|ref|XP_003040439.1| hypothetical protein NECHADRAFT_52748 [Nectria haematococca mpVI
           77-13-4]
 gi|256721319|gb|EEU34726.1| hypothetical protein NECHADRAFT_52748 [Nectria haematococca mpVI
           77-13-4]
          Length = 270

 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 79/234 (33%), Gaps = 15/234 (6%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ-----ITDVQKK 549
           + Q  + + +  +     V+ +QT F+ + GGQ  D G     G           D    
Sbjct: 33  LEQDNQDLFKQGTEHDYAVITEQTIFHPQGGGQPSDVGKMTDQGGVCFTAAAARMDATGN 92

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            + +                 +   ID + R   S  H+A H+L  A++ +L   +    
Sbjct: 93  GQVLHFGRFNSPGDTFSQGHDVDQEIDLELRLLYSRYHTAGHVLGSAVNHLLKDKIEDFD 152

Query: 610 SCITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
                          + +   + K  I+  V++ IA  +PV     + +D   +G   L 
Sbjct: 153 ELKASHFPDSASCEFQGLIEGKWKDAIQQKVDEFIAAKMPVEIHWWDEQDFRDNGLERLT 212

Query: 669 GTK----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                    ++ RVV +   +        CGGTHV +T       +   S  + 
Sbjct: 213 PDASFVAPGEKFRVVKIVGAEVY-----PCGGTHVDTTDLCGETKVKKISRSKG 261


>gi|170290346|ref|YP_001737162.1| threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174426|gb|ACB07479.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 247

 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 13/221 (5%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G    VV D + F+   GGQ  D G   G+G   ++  V  +++ + V +  + RG  
Sbjct: 36  EKGSYYYVVPDSSIFHPLGGGQPSDQGWIRGEGFEAEVRKV-LESDDVIVIYCKLIRG-- 92

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
             E      +D++ R  +   H+A H++  AL+ ++G  V   G+   P     D     
Sbjct: 93  DLEGEAEQELDWEKRYLVMRLHTAGHVIDRALADLMGR-VETLGAFHGPPRAYVDYR--A 149

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYE 684
            I  + L  IE   N+++ +   +V  +   +       A  LG        R+V ++  
Sbjct: 150 SIDESLLPEIERGANELLGEREVIVREVAPEDLEKVIYGAPNLGRLPRAERYRIVEIKGV 209

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +        C GTHV +  E+  + I     +  G  RI  
Sbjct: 210 NAM-----PCTGTHVRNAAEVGRISITGIERVEGGT-RIYY 244


>gi|298291392|ref|YP_003693331.1| threonyl/alanyl tRNA synthetase SAD [Starkeya novella DSM 506]
 gi|296927903|gb|ADH88712.1| Threonyl/alanyl tRNA synthetase SAD [Starkeya novella DSM 506]
          Length = 237

 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 73/216 (33%), Gaps = 11/216 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI--LRT 567
           +  +V D+T FYA AGGQ GD G  +         +             +   G      
Sbjct: 26  EGGIVVDRTVFYATAGGQPGDRGTLLRTNGTEIPIETAIYGPSKVDIVHVPVGGPILPEP 85

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ++ L +D+  R +    H+A HLL  AL       V+          L FD+  +   
Sbjct: 86  GEAVTLRLDWATRHRRMRMHTALHLLSVAL----PFPVTGGSIGEEESRLDFDIPEAGLD 141

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
                  + + +      +   ++      +       A+       +VR+V +   D  
Sbjct: 142 KDEITARLAEMIASGAKVSERWISDEELLANPGLVKTMAVKPPMGTGKVRLVEIAGLD-- 199

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                 CGGTHV S  EI  + +          RR+
Sbjct: 200 ---LQPCGGTHVRSLEEIGAVQVSKIEKKGQQNRRV 232


>gi|167839951|ref|ZP_02466635.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis MSMB43]
          Length = 239

 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 5/213 (2%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V   Q PFY   GGQL D G    +G    +T   +   G+++  A            
Sbjct: 25  GAVRLSQHPFYPGGGGQLPDLGTVQWEGGVETVTGFSEDEGGLWIELANGVE----IVGH 80

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +  ++D   RR +   H+  H+L+  +       +            R D          
Sbjct: 81  VQSSVDAAFRRSMRELHTDLHVLNALVYRDFDGALVTGVQMNADRTARIDFDLPDADNDR 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L+++E  +ND++ ++LPV TR +   DA          +          V   +     
Sbjct: 141 -LRALEAELNDVVHRDLPVRTRYVPLADAQQESGLLRSRSVAPPPTADGLVRIVEIDGLD 199

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           S  CGGTH++STG    + I+   +     RR+
Sbjct: 200 SQACGGTHLASTGGSSPVRILKIENKGRSNRRV 232


>gi|163759477|ref|ZP_02166562.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162283074|gb|EDQ33360.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 237

 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 18/245 (7%)

Query: 493 KAIVQQGEIVEEAVSG-----QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
           KA+  +   +  A +      +   ++ DQT FYA +GGQ GDTG          I    
Sbjct: 2   KALFVEDAYLSTAEARVTTVREDGGIMLDQTCFYATSGGQPGDTGFLERTNGEKIIIAGT 61

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
              E       I   G     +  V+ ID+     +      + L         G  +  
Sbjct: 62  VTGESKSEIIHIPAPGRSARAVRAVMHIDWSGGTLMRCTPLPSTL--------GGLPLPD 113

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
           +G+ ++    R D   S+ I  AE+ +    +   +  N P+ T+ ++ +D  A+     
Sbjct: 114 HGAAVSETDSRIDFDMSETIDKAEVTAKLMEL---VNANHPIFTQWISEDDLAANPDLVK 170

Query: 668 LGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                    + R+  V   +G    S  CGGTHVS T E+  ++I          RR   
Sbjct: 171 SKNVRPPRGQDRIRLVCIGEGSAIDSQPCGGTHVSETAEVGEIHIGKIEKKGRENRRFRI 230

Query: 726 ITGQR 730
             G  
Sbjct: 231 RFGPA 235


>gi|167737817|ref|ZP_02410591.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 14]
          Length = 243

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 88/233 (37%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE----------GIF 554
             +     +  D+T FY   GGQ GD+G     G         +KA+           + 
Sbjct: 20  VTAVDAAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                     ++   +LV  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAALAASVKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D +R D    +PI       ++  + +++    PV T  +  ++ +A        +    
Sbjct: 134 DYVRIDFATVEPIDRE---HVQARLGELVDGAHPVTTEWITDDEMVARPELVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVD-----LQPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|254191172|ref|ZP_04897677.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254301829|ref|ZP_04969272.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 406e]
 gi|157811604|gb|EDO88774.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 406e]
 gi|157938845|gb|EDO94515.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 242

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 5/213 (2%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V   + PFY   GGQL D G    +G    +    +   G+++  A            
Sbjct: 28  GAVRLSRHPFYPGGGGQLPDLGTVRWEGGVETVAGFSEDGGGLWIEFANGVE----IVGD 83

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +  ++D   RR +   H+  H+L+  +       +            R D          
Sbjct: 84  VQSSVDAAFRRAMRELHTDLHVLNALVYRDFDGALVTGVQMNADRTARIDFDLPDADNDR 143

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L+++E  +ND++ ++LPV TR +   DA  +       +          V   +     
Sbjct: 144 -LRALEAEMNDVVRRDLPVRTRYVPLADAQQASGLLRSRSVAPPPTADGLVRIVEIDGLD 202

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           S  CGGTH++STG    + I+   +     RR+
Sbjct: 203 SQACGGTHLASTGGSSPVRILKIENKGRSNRRV 235


>gi|217418597|ref|ZP_03450104.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 576]
 gi|251766941|ref|ZP_02265440.2| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei PRL-20]
 gi|254173946|ref|ZP_04880609.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei ATCC
           10399]
 gi|254200437|ref|ZP_04906802.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei FMH]
 gi|254204463|ref|ZP_04910816.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei JHU]
 gi|254356690|ref|ZP_04972965.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei 2002721280]
 gi|147748049|gb|EDK55124.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei FMH]
 gi|147754049|gb|EDK61113.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei JHU]
 gi|148025717|gb|EDK83840.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei 2002721280]
 gi|160694993|gb|EDP84963.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei ATCC
           10399]
 gi|217397901|gb|EEC37916.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 576]
 gi|243064432|gb|EES46618.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei PRL-20]
          Length = 242

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 5/213 (2%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V   + PFY   GGQL D G    +G    +    +   G+++  A            
Sbjct: 28  GAVRLSRHPFYPGGGGQLPDLGTVRWEGGVETVAGFSEDGGGLWIEFANGVE----IVGD 83

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +  ++D   RR +   H+  H+L+  +       +            R D          
Sbjct: 84  VQSSVDAAFRRAMRELHTDLHVLNALVYRDFDGALVTGVQMNADRTARIDFDLPDADNDR 143

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L+++E  +ND++ ++LPV TR +   DA  +       +          V   +     
Sbjct: 144 -LRALEAEMNDVVRRDLPVRTRYVPLADAQQASGLLRSRSVAPPPTADGLVRIVEIDGLD 202

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           S  CGGTH++STG    + I+   +     RR+
Sbjct: 203 SQACGGTHLASTGGSSPVRILKIENKGRSNRRV 235


>gi|53716611|ref|YP_105641.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei ATCC
           23344]
 gi|121597260|ref|YP_990027.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei SAVP1]
 gi|124382398|ref|YP_001024050.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei NCTC
           10229]
 gi|126445649|ref|YP_001078560.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei NCTC
           10247]
 gi|134282625|ref|ZP_01769329.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 305]
 gi|167906819|ref|ZP_02494024.1| alanyl-tRNA synthetase-related protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167923008|ref|ZP_02510099.1| alanyl-tRNA synthetase-related protein [Burkholderia pseudomallei
           BCC215]
 gi|238562041|ref|ZP_00441025.2| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|52422581|gb|AAU46151.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei ATCC
           23344]
 gi|121225058|gb|ABM48589.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei SAVP1]
 gi|124290418|gb|ABM99687.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei NCTC 10229]
 gi|126238503|gb|ABO01615.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei NCTC 10247]
 gi|134246182|gb|EBA46272.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 305]
 gi|238523377|gb|EEP86816.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei GB8 horse 4]
          Length = 239

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 5/213 (2%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V   + PFY   GGQL D G    +G    +    +   G+++  A            
Sbjct: 25  GAVRLSRHPFYPGGGGQLPDLGTVRWEGGVETVAGFSEDGGGLWIEFANGVE----IVGD 80

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +  ++D   RR +   H+  H+L+  +       +            R D          
Sbjct: 81  VQSSVDAAFRRAMRELHTDLHVLNALVYRDFDGALVTGVQMNADRTARIDFDLPDADNDR 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L+++E  +ND++ ++LPV TR +   DA  +       +          V   +     
Sbjct: 141 -LRALEAEMNDVVRRDLPVRTRYVPLADAQQASGLLRSRSVAPPPTADGLVRIVEIDGLD 199

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           S  CGGTH++STG    + I+   +     RR+
Sbjct: 200 SQACGGTHLASTGGSSPVRILKIENKGRSNRRV 232


>gi|53722342|ref|YP_111327.1| alanyl-tRNA synthetase related protein [Burkholderia pseudomallei
           K96243]
 gi|76817280|ref|YP_335495.1| putative alanyl-tRNA synthetase related protein [Burkholderia
           pseudomallei 1710b]
 gi|126442323|ref|YP_001062866.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|126458214|ref|YP_001075819.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia pseudomallei 1106a]
 gi|167723888|ref|ZP_02407124.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei DM98]
 gi|167742862|ref|ZP_02415636.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 14]
 gi|167820033|ref|ZP_02451713.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 91]
 gi|167828416|ref|ZP_02459887.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 9]
 gi|167849866|ref|ZP_02475374.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei B7210]
 gi|167898468|ref|ZP_02485869.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 7894]
 gi|167915173|ref|ZP_02502264.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 112]
 gi|226198480|ref|ZP_03794047.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237507665|ref|ZP_04520380.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei MSHR346]
 gi|242312347|ref|ZP_04811364.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106b]
 gi|254183694|ref|ZP_04890286.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1655]
 gi|254193426|ref|ZP_04899860.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei S13]
 gi|254263376|ref|ZP_04954241.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1710a]
 gi|52212756|emb|CAH38788.1| putative alanyl-tRNA synthetase related protein [Burkholderia
           pseudomallei K96243]
 gi|76581753|gb|ABA51227.1| putative alanyl-tRNA synthetase related protein [Burkholderia
           pseudomallei 1710b]
 gi|126221814|gb|ABN85319.1| putative alanine--tRNA ligase [Burkholderia pseudomallei 668]
 gi|126231982|gb|ABN95395.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106a]
 gi|169650179|gb|EDS82872.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei S13]
 gi|184214227|gb|EDU11270.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1655]
 gi|225929403|gb|EEH25423.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|234999870|gb|EEP49294.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei MSHR346]
 gi|242135586|gb|EES21989.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106b]
 gi|254214378|gb|EET03763.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1710a]
          Length = 239

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 5/213 (2%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V   + PFY   GGQL D G    +G    +    +   G+++  A            
Sbjct: 25  GAVRLSRHPFYPGGGGQLPDLGTVRWEGGVETVAGFSEDGGGLWIEFANGVE----IVGD 80

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +  ++D   RR +   H+  H+L+  +       +            R D          
Sbjct: 81  VQSSVDAAFRRAMRELHTDLHVLNALVYRDFDGALVTGVQMNADRTARIDFDLPDADNDR 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L+++E  +ND++ ++LPV TR +   DA  +       +          V   +     
Sbjct: 141 -LRALEAEMNDVVRRDLPVRTRYVPLADAQQASGLLRSRSVAPPPTADGLVRIVEIDGLD 199

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           S  CGGTH++STG    + I+   +     RR+
Sbjct: 200 SQACGGTHLASTGGSSPVRILKIENKGRSNRRV 232


>gi|313147362|ref|ZP_07809555.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313136129|gb|EFR53489.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 157

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 7/157 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M +           ++  H+A HLL+  +    G   S+N + I     + D       T
Sbjct: 4   MEINQAAPKFQDVSIAPMHTAEHLLNATMVKTFGCPRSRN-AHIEKKKSKCDYELPVCPT 62

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++ +IE+ VN+ I ++LPV    M  E A +    + L    ++ +R+V +   D   
Sbjct: 63  EEQIHAIEEKVNEAINRHLPVTCEFMTHEKAKSIVDLSKLPENASEMLRIVRIGDYDA-- 120

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                C G HV +T EI +  I+S      G  R+  
Sbjct: 121 ---CACIGQHVENTSEIGIFKIIS-YDYADGKLRLRF 153


>gi|289524578|ref|ZP_06441432.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502183|gb|EFD23347.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 63

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 840 IVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +  ED + D  +A       AK++GGGG GGRP++AQ+GG    K + A+  V   L +
Sbjct: 1   AMADEDAVRDGIHAGKFIDRIAKIVGGGG-GGRPNVAQAGGKEVEKLEDALNAVPRILTE 59


>gi|255009584|ref|ZP_05281710.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 164

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 7/157 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M +           ++  H+A HLL+  +    G   S+N + I     + D       T
Sbjct: 11  MEINQAAPKFQDVSIAPMHTAEHLLNATMVKTFGCPRSRN-AHIEKKKSKCDYELPVCPT 69

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++ +IE+ VN+ I ++LPV    M  E A +    + L    ++ +R+V +   D   
Sbjct: 70  EEQIHAIEEKVNEAINRHLPVTCEFMTHEKAKSIVDLSKLPENASEMLRIVRIGDYDA-- 127

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                C G HV +T EI +  I+S      G  R+  
Sbjct: 128 ---CACIGQHVENTSEIGIFKIIS-YDYADGKLRLRF 160


>gi|70983967|ref|XP_747509.1| alanyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66845135|gb|EAL85471.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus Af293]
 gi|159123513|gb|EDP48632.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus A1163]
          Length = 273

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 17/224 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ-----ITDVQKKAEGIFVHHAIVE 561
           + +   ++ +QT F+ + GGQ  D G                 D  ++ + +        
Sbjct: 45  TDEDYAIITEQTIFHPQGGGQPSDEGTMTSASGGAFTVAAVRMDAVREGQVLHFGRFNQS 104

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
             +     ++  TID + R   S  H+A H+L  A+  +L   V                
Sbjct: 105 SVVFSEGDTVEQTIDAEKRLLYSRLHTAGHVLGAAVRHLLEKEVEGFDELKASHFPDAAA 164

Query: 622 THSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YND 674
              +     + K  I+  VN+ I   LPV     + E+    G   LL  +        +
Sbjct: 165 CEFQGAIDGKWKDPIQAKVNEFIEAKLPVEVDWWDEEEFRRRGLERLLPDRGAVAVAPGE 224

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           + RVV++   +        CGGTHV +T       +   +    
Sbjct: 225 KFRVVNIVGAEVY-----PCGGTHVETTDLCGSTTVRKITRKAG 263


>gi|255691526|ref|ZP_05415201.1| alanyl-tRNA synthetase family protein [Bacteroides finegoldii DSM
           17565]
 gi|260622917|gb|EEX45788.1| alanyl-tRNA synthetase family protein [Bacteroides finegoldii DSM
           17565]
          Length = 158

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 7/153 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T+ +++
Sbjct: 6   QLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPTAEQIQ 64

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           SIE+ VN+ I+QNLPV    M  E A      + L    ++ +R+V +   D        
Sbjct: 65  SIENKVNEAISQNLPVTVEYMTHEQAKDIVDLSKLPADASETLRIVRIGDYDA-----CA 119

Query: 694 CGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
           C G HVS+T E+     I  +        RI  
Sbjct: 120 CIGLHVSNTSEVGTFKIISYDYDEERQTLRIRF 152


>gi|189465580|ref|ZP_03014365.1| hypothetical protein BACINT_01938 [Bacteroides intestinalis DSM
           17393]
 gi|189437854|gb|EDV06839.1| hypothetical protein BACINT_01938 [Bacteroides intestinalis DSM
           17393]
          Length = 157

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+  H+++  +  + G       + I     + D +     T  +
Sbjct: 4   QIQLNDHNKQEYPPMHTCEHIVNRTMMNLFGCGR-SVSAHIERKKSKLDYSLETAPTEED 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +K +E+ VND+IAQ L V T  + +E+A        L    ++ VR+V V   D      
Sbjct: 63  VKRLEEAVNDVIAQGLDVTTEFITQEEAQGRFDLKRLPEDASETVRIVKVGDYDE----- 117

Query: 692 ALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
            LC GTHV +T EI +   I  + +  A + R+  
Sbjct: 118 CLCLGTHVKNTSEIGIFKVISHDWNEGAKLWRMRF 152


>gi|224371110|ref|YP_002605274.1| AlaS2 [Desulfobacterium autotrophicum HRM2]
 gi|223693827|gb|ACN17110.1| AlaS2 [Desulfobacterium autotrophicum HRM2]
          Length = 145

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSA H+L+  +  +       + + I     + D   ++ +T  EL  IE  VN +I  
Sbjct: 9   MHSAEHILNGTMDQLFNCGRCFS-AHIERKKSKCDYHFTRALTPEELIQIESQVNRVIRA 67

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V    +   +A      + L    +D +R+VS+   D        C GTHVS T E+
Sbjct: 68  NMKVTDTCIPMAEADKRFNLSRLPDGRSDEIRIVSIGDYDA-----CPCIGTHVSETSEL 122

Query: 706 MLLYIVSESSIRAGIRRIEA 725
               I + S  + G+ RI  
Sbjct: 123 GTFRITT-SDFKDGVLRIRF 141


>gi|169786155|ref|XP_001827538.1| alanyl-tRNA synthetase [Aspergillus oryzae RIB40]
 gi|83776286|dbj|BAE66405.1| unnamed protein product [Aspergillus oryzae]
          Length = 270

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 76/232 (32%), Gaps = 15/232 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAIVE 561
           A +     V  ++T F+ + GGQ  D G   G       +    +    +G  +H     
Sbjct: 43  AGNDDDHVVATEKTIFHPQGGGQPSDVGTMTGPAGTTFTVTAVRMDATGQGQVLHLGRFG 102

Query: 562 RGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            G         ++   +D + R   S  H+A H+L  A+  +L   V             
Sbjct: 103 DGSSSAFSKGETVRQEVDAEKRLLHSRLHTAGHVLGAAVRHLLEKEVQDFDELKASHAPG 162

Query: 619 FDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT---KYND 674
                 + +   + K  I+  V+  IA    V     +       G   L+        +
Sbjct: 163 SASCEFQGLIEGKWKEPIQKRVDQYIADKREVRVEWWDEAMFREKGLERLIPDRSLMLGE 222

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           + RVV++   +        CGGTHV +T       +   S      R   A+
Sbjct: 223 KFRVVNIVGAEVY-----PCGGTHVDTTDLCGPTSVTKISRKSGKSRVSYAV 269


>gi|253568623|ref|ZP_04846034.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251842696|gb|EES70776.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 158

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ++  N+++    H+A HLL+  +    G   S+N + I     + D       T AE
Sbjct: 4   QPQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILPTCPTDAE 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +++IED VN+II+QNLPV    M  E A      + L    ++ +R++ +   D      
Sbjct: 63  IQTIEDKVNEIISQNLPVTVEFMTHEQAKDIVDLSKLPADASETLRIIRIGDYDA----- 117

Query: 692 ALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
             C G HVS+T E+     I  +        R+  
Sbjct: 118 CACIGLHVSNTSEVGTFKIISHDYDEERQTLRLRF 152


>gi|332110535|gb|EGJ10858.1| Threonyl/alanyl tRNA synthetase SAD [Rubrivivax benzoatilyticus
           JA2]
          Length = 242

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 23/223 (10%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILR 566
              +V D+T FY + GGQ GD G  +    R   +  T    +  G+ VH A     +  
Sbjct: 27  DGGIVLDRTVFYPQGGGQAGDAGELLATDGRRVAIADTRKHPEHPGVVVHRAAEGADLSW 86

Query: 567 --TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                ++   ID   R+     HSATHLL   +          +G  IT    R D   +
Sbjct: 87  LAPGTAVRAAIDVARRQAHRRFHSATHLLCALVPQ------PVDGCSITAGYARLDFHMT 140

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVS 680
           +P+    L +    +   +A+  PV TR ++ ++  A+       ++   +   RVR+V 
Sbjct: 141 EPLDKDLLGAGLARL---VAEARPVHTRWISEDELDANPQLVRSMSVQPPRGQGRVRLVE 197

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +E  D        CGGTHV++T EI  + +       A  RR+
Sbjct: 198 IEGLD-----LQPCGGTHVANTAEIGAVVVTKIEKKSAKTRRV 235


>gi|186476790|ref|YP_001858260.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia phymatum STM815]
 gi|184193249|gb|ACC71214.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia phymatum STM815]
          Length = 243

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 77/246 (31%), Gaps = 26/246 (10%)

Query: 493 KAIVQQGEIV----EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
           +A+ +    +        +  +  +  DQT FY   GGQ GD G               +
Sbjct: 4   RALFRDDAYLTRCDATITAIDEQGIHLDQTVFYPLGGGQAGDAGVLTLADGTRIQIADTR 63

Query: 549 KAEGIFVHHAIVERGILR----------TEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           KA+                             L   ID+  R +    H+A+HL+   L 
Sbjct: 64  KAKFEGATPDDAVHVPAPGQEALLAQLAAGQPLTAEIDWGRRYRHMRLHTASHLMCAVLP 123

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
                    +G  IT D  R D    +PI   E+++    +                   
Sbjct: 124 Y------PVDGCSITSDYARLDFATVEPIGREEVETRLAELVGGAHGVATQWITDDEMAS 177

Query: 659 AIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                    +       RVR++ +E  D        CGGTHV +T EI  L +       
Sbjct: 178 RPELVRTMSVKPPMGLGRVRLLRIEGVD-----LQPCGGTHVRNTQEIGGLRVAKLEKKS 232

Query: 718 AGIRRI 723
           A  RR+
Sbjct: 233 ARTRRL 238


>gi|329957977|ref|ZP_08298409.1| threonine/alanine tRNA ligase second additional domain protein
           [Bacteroides clarus YIT 12056]
 gi|328522126|gb|EGF49242.1| threonine/alanine tRNA ligase second additional domain protein
           [Bacteroides clarus YIT 12056]
          Length = 582

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+  H+++  +  + G       + I     + D   +   T  +
Sbjct: 431 QIQLNEHNKQEYPPMHTTEHIVNQTMIRLFGCGR-SVSAHIERKKSKLDYRLNACPTEEQ 489

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +KS+E+ VN++IA++LPV T  + +E+A        L    ++ VRVV V   D      
Sbjct: 490 IKSLEEAVNEVIARHLPVTTEFITQEEAKGRFDLERLPEDASETVRVVKVGDYDE----- 544

Query: 692 ALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
            LC GTHV++T EI     I  +    +   R+  
Sbjct: 545 CLCIGTHVANTSEIGTFKIISHDWDEESKRWRMRF 579


>gi|254469513|ref|ZP_05082918.1| alanyl-transfer RNA synthetase domain protein [Pseudovibrio sp.
           JE062]
 gi|211961348|gb|EEA96543.1| alanyl-transfer RNA synthetase domain protein [Pseudovibrio sp.
           JE062]
          Length = 241

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 75/219 (34%), Gaps = 13/219 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILR 566
           +  ++ D+T FY   GGQ GD+G    +      +  T   K    I    A   +    
Sbjct: 25  EDGIILDRTCFYPNGGGQPGDSGSIELEDGTRIPIATTVYSKDRTQIVHVPAEGTQLPAA 84

Query: 567 T--EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 +   +D++ R +    H+A HLL      +L   V+          L FD+  +
Sbjct: 85  LSAGAKITAHVDWETRYKRMRVHTALHLLSV----VLPFPVTGGQISDGTGRLDFDIPEA 140

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
                     +++ +    A     +T      +       ++     + RVR+V +   
Sbjct: 141 ALDKEELTGKLQELIAGDYAVTQEWITDEELEANPGLVKTMSVKPPMGSGRVRLVRIGDN 200

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                    CGGTHVS T +I    I          RR+
Sbjct: 201 ----VDLQPCGGTHVSQTAQIGTAVITKIEKKGRQNRRV 235


>gi|260174420|ref|ZP_05760832.1| alanyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315922688|ref|ZP_07918928.1| alanyl-tRNA synthetase [Bacteroides sp. D2]
 gi|313696563|gb|EFS33398.1| alanyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 158

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T+ +
Sbjct: 4   QIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPTAEQ 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++SIED VN++I+QNLPV    M  E A      + L    ++ +R+V +   D      
Sbjct: 63  IQSIEDRVNEVISQNLPVTVEFMTHEQAKDIVDLSKLPADASETLRIVRIGDYDA----- 117

Query: 692 ALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
             C G HVS+T E+ +   I  +        RI  
Sbjct: 118 CACIGLHVSNTSEVDIFKIISYDYDEERQTLRIRF 152


>gi|29345976|ref|NP_809479.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337870|gb|AAO75673.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 158

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ++  N+++    H+A HLL+  +    G   S+N + I     + D       T AE
Sbjct: 4   QPQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILPTCPTDAE 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +++IED VN++I+QNLPV    M  E A      + L    ++ +R++ +   D      
Sbjct: 63  IQAIEDKVNEVISQNLPVTVEFMTHEQAKGIVDLSKLPADASETLRIIRIGDYDA----- 117

Query: 692 ALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
             C G HVS+T E+     I  + +      R+  
Sbjct: 118 CACIGLHVSNTSEVGTFKIISHDYNEERQTLRLRF 152


>gi|14590056|ref|NP_142120.1| alanyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|74570440|sp|O57848|ALAXM_PYRHO RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           AltName: Full=Alanyl-tRNA deacylase AlaX-M
 gi|134104183|pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From
           Pyrococcus Horikoshii
 gi|3256494|dbj|BAA29177.1| 216aa long hypothetical alanyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 216

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 77/214 (35%), Gaps = 31/214 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ DQT FY   GGQ  D G   G  +     D +       V H + E    +    + 
Sbjct: 30  ILLDQTIFYPTGGGQPHDRGTINGVEVLDVYKDEEG-----NVWHVVKEPEKFKVGDEVE 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGLRFDVTHSKPITSAE 631
           L ID+  R +L   H+  HLL H L+ +LG    Q  GS ++ +  R+D+ + + +    
Sbjct: 85  LKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNK-Y 143

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            + I    N  + +   V                                          
Sbjct: 144 KEQIISLFNKYVDEGGEVKIWWEGDRRYTQIR------------------------DFEV 179

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             CGGTHV    EI  +  +  SSI  G +R+E 
Sbjct: 180 IPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEM 213


>gi|150007326|ref|YP_001302069.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|262382100|ref|ZP_06075238.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298375313|ref|ZP_06985270.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 3_1_19]
 gi|149935750|gb|ABR42447.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|262297277|gb|EEY85207.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298267813|gb|EFI09469.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 3_1_19]
          Length = 153

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 72/154 (46%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+A H+L+  +  + G   S+N + I     + D   ++  ++  
Sbjct: 4   EIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKN-AHIERKKSKCDYLLAEEPSAEV 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  +E  +N++I ++LPV    M +E+A      + L    +D +R+V +   D      
Sbjct: 63  MAEVEKKINEVIDRHLPVTIEFMPKEEAGDIVDLSKLPDDASDTLRIVRIGDYDA----- 117

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             C G+HV++T EI    +++      G  R+  
Sbjct: 118 CACIGSHVANTSEIGHFKLLN-YDYADGRLRLRF 150


>gi|156049927|ref|XP_001590925.1| hypothetical protein SS1G_07549 [Sclerotinia sclerotiorum 1980]
 gi|154691951|gb|EDN91689.1| hypothetical protein SS1G_07549 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 269

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 83/243 (34%), Gaps = 17/243 (6%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           +  + ++ +++ +        +    T F+ + GGQ  D G    +        + + + 
Sbjct: 28  LTTLAEENKLLFKDAKDDAYAITTKSTIFHPQGGGQPSDEGTMENEEGIKFTVQMVRMSA 87

Query: 552 G----IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
                +                 +   ID + R   S  H+A H+L  A+  ++ S V  
Sbjct: 88  ITDGEVLHFGTFSAPTSFSPSQQITQKIDQEKRLLYSRYHTAGHVLGAAVRHLVSSSVPN 147

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGA-- 664
                              +  +  K+ I+  +++ I  ++PV     +  D IA+G   
Sbjct: 148 FDETKASHFPSSAACEFAGLIESTWKTPIQQKLDEYIEADMPVEIDWWDEADFIANGMER 207

Query: 665 ----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                  +G    ++ RVV +   +        CGGTHV ST       +   +    G 
Sbjct: 208 LIPDRVAMGMTKEEKFRVVKIVGAETY-----PCGGTHVDSTKHCGKTSVKKVAR-SKGT 261

Query: 721 RRI 723
            R+
Sbjct: 262 SRV 264


>gi|167918222|ref|ZP_02505313.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei BCC215]
          Length = 243

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 88/229 (38%), Gaps = 28/229 (12%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK-------AEGIFVHHAIVE 561
            +  +  D+T FY   GGQ GD+G     G         +K        +      A  +
Sbjct: 24  DEAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVLAPGQ 83

Query: 562 RGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
             +   ++   +LV  ID+  R +    H+A+HLL   L          +G  +T D +R
Sbjct: 84  AALAAGVKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLPY------PVDGCSVTADYVR 137

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND---- 674
            D    +PI    +++    +   +    PV T  +  ++ +A        +        
Sbjct: 138 IDFATVEPIDREHVQARLAEL---VGGAHPVTTEWITDDEMVARPELVRTMSVKPPMGLG 194

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 195 RVRLLRIEGVD-----LQPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|297834538|ref|XP_002885151.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330991|gb|EFH61410.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 256

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 17/235 (7%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            V +A  G ++ ++ D T F+ + GGQ  DTG  +  G   + +    +++   V H  V
Sbjct: 25  SVFKAQDG-RIALILDSTLFHPQGGGQPADTGLIVFSGSDFKFSVQDVRSKDGIVLHYGV 83

Query: 561 ERGILR-------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
             G              + +T+D   R+  S  HSA HLL   +  +   H+        
Sbjct: 84  FEGSNPESGMDIEKGKEVYVTVDESRRKLNSRLHSAGHLLDLCMQKVGLGHLEPGKGYHF 143

Query: 614 PDGLRFDV--THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGT 670
           PDG   +   +  +   + + K +E   ND+I +   V   I+  E+A    G       
Sbjct: 144 PDGPFVEYKGSVPQGQMAVKQKELEAEANDLITKGGKVYAAILPYEEASVLCGGNLPDYI 203

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                 R++ +    G       CGGTHVS   +I+ + +      + GI ++  
Sbjct: 204 SKGSTPRIIKLGDSPG-----CPCGGTHVSDLSDIIAMKVTQM-RTKKGITKVFY 252


>gi|255014047|ref|ZP_05286173.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_7]
          Length = 153

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 72/154 (46%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+A H+L+  +  + G   S+N + I     + D   ++  ++  
Sbjct: 4   EIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKN-AHIERKKSKCDYLLAEEPSAEV 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  +E  +N++I ++LPV    M +E+A      + L    +D +R+V +   D      
Sbjct: 63  MAEVEKKINEVIDRHLPVTIEFMPKEEAGGIVDLSKLPDDASDTLRIVRIGDYDA----- 117

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             C G+HV++T EI    +++      G  R+  
Sbjct: 118 CACIGSHVANTSEIGHFKLLN-YDYADGRLRLRF 150


>gi|67459169|ref|YP_246793.1| metal-dependent hydrolase [Rickettsia felis URRWXCal2]
 gi|67004702|gb|AAY61628.1| Predicted metal-dependent hydrolases [Rickettsia felis URRWXCal2]
          Length = 235

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 82/233 (35%), Gaps = 14/233 (6%)

Query: 495 IVQQGEIVEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           + +    +      +K   ++ DQT FY + GGQ  D G    D     +T V++    I
Sbjct: 12  LFESKASILNYGEDEKGKFIILDQTIFYPQGGGQPSDQGVIQNDYFEANVTLVRQVDTEI 71

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCI 612
             +        +     +   +D   R   S  H+A HLL + +  +       +  S  
Sbjct: 72  RHYIGAASN-EIPINSIINCLVDKNRRMLNSRYHTAAHLLGNIVEILYPMLKAVKGHSFP 130

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
               + F       +T  +     + V+  IA+N        +                 
Sbjct: 131 GEAYVEFQGDVPVDVTQIQ-----NTVDQTIAKNNKTEIFETDPISFEQQFYKLPYIIPE 185

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           N + RV+ +     G  +   CGGTH+SST EI  + I     ++  I RI  
Sbjct: 186 NKKFRVMRI-----GDMAPVPCGGTHLSSTTEIGKILIGKVK-LKNNIVRISY 232


>gi|147774128|emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]
          Length = 1442

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           VF+QF+++       LP   ++ G G ER+ ++LQ K
Sbjct: 12  VFIQFDRERDGSLKSLPAKHVNAGTGFERLTSILQGK 48


>gi|298482854|ref|ZP_07001037.1| alanyl-tRNA synthetase family protein [Bacteroides sp. D22]
 gi|298271054|gb|EFI12632.1| alanyl-tRNA synthetase family protein [Bacteroides sp. D22]
          Length = 158

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 7/153 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T+ +++
Sbjct: 6   QLNDHNKQEYPPMHTAEHLLNATMVKTYGCPRSRN-AHIERKKSKCDYILSSCPTAEQIQ 64

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           SIE+ VN+ I+QNLPV    M  E A      + L    +  +R+V +   D        
Sbjct: 65  SIEETVNEAISQNLPVTVEYMTHEQAKDIVDLSKLPADASPTLRIVRIGDYDA-----CA 119

Query: 694 CGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
           C G HVS+T E+     I  +        R+  
Sbjct: 120 CIGLHVSNTSEMGTFKIISYDYDEERQTLRMRF 152


>gi|154492740|ref|ZP_02032366.1| hypothetical protein PARMER_02377 [Parabacteroides merdae ATCC
           43184]
 gi|154087045|gb|EDN86090.1| hypothetical protein PARMER_02377 [Parabacteroides merdae ATCC
           43184]
          Length = 155

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 71/154 (46%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+A H+L+  +  + G   S+N + I     + D    +  T+  
Sbjct: 4   EIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKN-AHIERKKSKCDYELQEEPTAEM 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++ +E  +N++I ++LPV    + + +A      + L    ++ +R+V +   D     +
Sbjct: 63  MEEVERRINEVIDRHLPVTIEFVPKAEAGKIVDLSKLPEDASETLRIVRIGDYD-----T 117

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             C G HV++T EI    +++      G  R+  
Sbjct: 118 CACIGAHVNNTSEIGHFKMLT-YDYTDGRLRLRF 150


>gi|282164324|ref|YP_003356709.1| alanyl-tRNA synthetase-related protein [Methanocella paludicola
           SANAE]
 gi|282156638|dbj|BAI61726.1| alanyl-tRNA synthetase-related protein [Methanocella paludicola
           SANAE]
          Length = 215

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 82/226 (36%), Gaps = 29/226 (12%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   +  S   V V+ + T F+   GGQ GD+G   G  +          A    + H +
Sbjct: 14  EFKSKVASVDGVNVILEDTYFFPRGGGQTGDSGTIGGVKVV------DTVAGNGRIVHIM 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGLR 618
                 +    +   ID++ R +    HSA+H++++ +  + G   +  +   +  +  R
Sbjct: 68  ESAPSFKAGDMVECAIDWEKRYRKMRLHSASHIVYYLMKEVFGDACTIASSGLLDENKER 127

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D     P+  A+LK +ED  N +IA+   + T                     +  V  
Sbjct: 128 SDYLFEAPLDKAKLKEVEDRANALIAEGWDIKT----------------YRDPVDSGVLR 171

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             +            C GTH  ++ EI  + I        G  RIE
Sbjct: 172 WEMAPWKMD------CCGTHPKNSKEIGHITISRGKKPGKGRERIE 211


>gi|167585939|ref|ZP_02378327.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ubonensis Bu]
          Length = 165

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 18/161 (11%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +V  ID+  R +    H+A HL+   L          +G  +T D +R D   ++P
Sbjct: 14  PGARVVAEIDWARRYRHMRLHTAAHLMCAVLPY------PVDGCSVTADYVRLDFATAEP 67

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND----RVRVVSVE 682
           I   +++     +   I    PV T  +  ++  A        +        RVR++ ++
Sbjct: 68  IDRDDVERRLAEL---IGGAHPVTTEWITDDEMAARPELVRTMSVKPPMGLGRVRLLRID 124

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             D        CGGTHV +T EI  L +       A  RR+
Sbjct: 125 GVD-----LQPCGGTHVRNTSEIGGLRVAKLEKKSARTRRV 160


>gi|295083903|emb|CBK65426.1| Alanyl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
          Length = 158

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 7/153 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T+ +++
Sbjct: 6   QLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPTAEQIQ 64

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           SIE+ VN+ I+QNLPV    M  E A      + L    +  +R+V +   D        
Sbjct: 65  SIEETVNEAISQNLPVTVEYMTHEQAKDIVDLSKLPADASPTLRIVRIGDYDA-----CA 119

Query: 694 CGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
           C G HVS+T E+     I  +        R+  
Sbjct: 120 CIGLHVSNTSEMGTFKIISYDYDEERQTLRMRF 152


>gi|76811885|ref|YP_332812.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|167910190|ref|ZP_02497281.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|217419457|ref|ZP_03450963.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 576]
 gi|254190583|ref|ZP_04897090.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195041|ref|ZP_04901470.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei S13]
 gi|254260089|ref|ZP_04951143.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1710a]
 gi|76581338|gb|ABA50813.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|157938258|gb|EDO93928.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169651789|gb|EDS84482.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei S13]
 gi|217396761|gb|EEC36777.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 576]
 gi|254218778|gb|EET08162.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1710a]
          Length = 243

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 88/233 (37%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK-------AEGIFVHH 557
             +     +  D+T FY   GGQ GD+G     G         +K        +      
Sbjct: 20  VTAVDAAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 558 AIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           A  +  +   ++   +LV  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAALAAGVKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLPY------PVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D +R D    +PI    +++    +   +    PV T  +  ++ +A        +    
Sbjct: 134 DYVRIDFATVEPIDREHVQARLAEL---VGGAHPVTTEWITDDEMVARPELVRTMSVKPP 190

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVD-----LQPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|224827097|ref|ZP_03700194.1| Threonyl/alanyl tRNA synthetase SAD [Lutiella nitroferrum 2002]
 gi|224600763|gb|EEG06949.1| Threonyl/alanyl tRNA synthetase SAD [Lutiella nitroferrum 2002]
          Length = 214

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 81/218 (37%), Gaps = 30/218 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV + T ++AE+GGQ  DTG   G  +       +     +   H + E        ++ 
Sbjct: 27  VVLEATLYFAESGGQESDTGTIGGYRVLAARWQGRDLVYTLPPGHVLEE------GDTVT 80

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + ID+  R  L   H A  ++   ++  L + + + G+ I  D  R D T  +P+T    
Sbjct: 81  VEIDWPRRYALMRLHFAAEIVLELVTQRLPA-IGKIGAHIGEDKARIDFTWHEPLTPL-- 137

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
                         LP + R         +   +    +     R   V           
Sbjct: 138 --------------LPELMREAQAVIDADAPIVSAFSDE-AAERRYWEVAGF-----GRV 177

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
            CGGTH+  TGE+ +L +    ++ +G  RIE     R
Sbjct: 178 PCGGTHLERTGEVGVLRLKR-KNVGSGKERIEIYAAPR 214


>gi|315230057|ref|YP_004070493.1| alanyl-tRNA synthetase domain-containing protein [Thermococcus
           barophilus MP]
 gi|315183085|gb|ADT83270.1| alanyl-tRNA synthetase domain protein [Thermococcus barophilus MP]
          Length = 214

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 86/227 (37%), Gaps = 31/227 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + V  +   ++ DQT FY   GGQ  D G   G  +     D +       V H 
Sbjct: 13  KEAKAKVVEIKDNALLLDQTIFYPTGGGQPHDRGTINGVHVLDVYKDEEG-----NVWHV 67

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGL 617
           + E    R    + L ID+  R +L   H+A HLL H L+ +LG    Q  GS ++ +  
Sbjct: 68  VEEPEKFRIGDEVELKIDWDYRYKLMRIHTAMHLLDHVLNEVLGKDKWQLYGSGMSVEKG 127

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R+D+ + + +     + I +  N  + +   V                           R
Sbjct: 128 RYDILYPENVNK-YKEQIIERFNKYVDEGGEVKIWW-------------------EGEKR 167

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +  +            CGGTHV    EI  +  +  SSI  G +R+E
Sbjct: 168 LTQIR-----DFEVLPCGGTHVKDIREIGHIKKLKRSSIGKGKQRLE 209


>gi|153806680|ref|ZP_01959348.1| hypothetical protein BACCAC_00950 [Bacteroides caccae ATCC 43185]
 gi|149131357|gb|EDM22563.1| hypothetical protein BACCAC_00950 [Bacteroides caccae ATCC 43185]
          Length = 155

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 7/153 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T+ +++
Sbjct: 6   QLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSSPTAEQIQ 64

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           +IE+ VN++I QNLPV    M  E A      + L    ++ +R++ +   D        
Sbjct: 65  AIENKVNEVINQNLPVTIEFMTHEQAKNIVDLSKLPKDASETLRIIRIGDYDA-----CA 119

Query: 694 CGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
           C G HVS T E+ +   I  +        R+  
Sbjct: 120 CIGAHVSHTSEVGIFKIISYDYDEARQTLRLRF 152


>gi|237719437|ref|ZP_04549918.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|293370234|ref|ZP_06616794.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides ovatus SD CMC 3f]
 gi|299146201|ref|ZP_07039269.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 3_1_23]
 gi|229451297|gb|EEO57088.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|292634731|gb|EFF53260.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides ovatus SD CMC 3f]
 gi|298516692|gb|EFI40573.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 3_1_23]
          Length = 158

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T+ +
Sbjct: 4   QIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPTAEQ 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++SIED VN++I+QNLPV    M  E A      + L    ++ +R+V +   D      
Sbjct: 63  IQSIEDRVNEVISQNLPVTVEFMTHEQAKDIVDLSKLPADASETLRIVRIGDYDA----- 117

Query: 692 ALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
             C G HVS T E+     I  +        RI  
Sbjct: 118 CACIGLHVSHTSEVGTFKIISYDYDEERQTLRIRF 152


>gi|14520326|ref|NP_125801.1| fragment of alanyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|5457541|emb|CAB49032.1| alaRS-like alanyl-tRNA synthetase related protein (fragment)
           [Pyrococcus abyssi GE5]
          Length = 213

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 83/228 (36%), Gaps = 31/228 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + V  +   ++ DQT FY   GGQ  D G   G  +     D +       V H 
Sbjct: 13  KEAKAKVVEIKDNALLLDQTIFYPTGGGQPHDRGTINGVEVLDVYKDEEG-----NVWHV 67

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGL 617
           + E    +    + L ID+  R +L   H+  HLL H L+ +LG    +  GS ++ +  
Sbjct: 68  VKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGKWELVGSGMSVEKG 127

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R+D+ + + +     + I    N  + +   V                           R
Sbjct: 128 RYDIAYPENLNK-YKEQIISLFNKYVDEGGEVKIWW-------------------EGETR 167

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
              +            CGGTHV    EI  +  +  SSI  G +R+E 
Sbjct: 168 YTQIR-----DFEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEM 210


>gi|218886217|ref|YP_002435538.1| threonyl/alanyl tRNA synthetase SAD [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757171|gb|ACL08070.1| Threonyl/alanyl tRNA synthetase SAD [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 148

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A H+L+  +    G     + + + P   + D      +  AE ++IE  VN +++
Sbjct: 8   RMHTAEHVLNGVMVARHGCGRCFS-AHVNPKKSKCDYHFDHQLDDAEARAIEAEVNRVLS 66

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            NLPV+   M+R +A +      L     D +R+V V   D        C GTHV++T E
Sbjct: 67  GNLPVIAVDMDRAEAASRFDLGRLPDDAGDTLRIVRVGDFDA-----CPCSGTHVANTAE 121

Query: 705 IMLLYIVSESSIRAGIRRIEA 725
           +    I+S      G+ R+  
Sbjct: 122 VGTFRIISH-DFENGVLRVRF 141


>gi|167764447|ref|ZP_02436568.1| hypothetical protein BACSTE_02831 [Bacteroides stercoris ATCC
           43183]
 gi|167697116|gb|EDS13695.1| hypothetical protein BACSTE_02831 [Bacteroides stercoris ATCC
           43183]
          Length = 582

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+++    H+  H+++  +  + G       + I     + D   +   T  +++S+E 
Sbjct: 437 HNKQEYPPMHTTEHIINQTMIRLFGCGR-SVSAHIERKKSKLDYRLNACPTEEQIESLEK 495

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN++IA++LPV T  + + +A        L    ++ VR+V V   D       LC GT
Sbjct: 496 AVNEVIARHLPVTTEFIAQAEAKGRFDLERLPEDASETVRIVKVGDYDE-----CLCIGT 550

Query: 698 HVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
           HV +T EI     I  +    +   R+  
Sbjct: 551 HVVNTSEIGTFKIISHDWDEESKRWRMRF 579


>gi|332158282|ref|YP_004423561.1| alanyl-tRNA synthetase-related protein [Pyrococcus sp. NA2]
 gi|331033745|gb|AEC51557.1| alanyl-tRNA synthetase-related protein [Pyrococcus sp. NA2]
          Length = 213

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 83/232 (35%), Gaps = 34/232 (14%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           + +    V E        ++ DQT FY   GGQ  D G   G  +     D Q       
Sbjct: 12  LKEAKAKVVEIRDND---LLLDQTIFYPTGGGQPHDRGTINGVEVLDVYKDEQG-----N 63

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCIT 613
           V H + E    +    + L ID+  R +L   H+  HLL H L+ +LG    Q  GS ++
Sbjct: 64  VWHVVKEPEKFKVGDEVELKIDWDYRYRLMRIHTGLHLLEHVLNEVLGEGKWQLVGSGMS 123

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +  R+D+ + + +       I +  N  + +   V                        
Sbjct: 124 VEKGRYDIAYPENLNK-YKDQIIELFNKYVDEGGEVKIWW-------------------E 163

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
              R   +            CGGTHV    E+  +  +  SSI  G +R+E 
Sbjct: 164 GETRYTQIR-----DFEVIPCGGTHVRDIKEVGHIKKLKRSSIGRGKQRLEM 210


>gi|256839616|ref|ZP_05545125.1| alanyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|256738546|gb|EEU51871.1| alanyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 153

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+A H+L+  +  + G   S+N + I     + D   ++  ++  
Sbjct: 4   EIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKN-AHIERKKSKCDYLLAEEPSAEA 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  +E  +N++I ++LPV    M +E A      + L    +D +R+V +   D      
Sbjct: 63  MAEVEKKINEVIDRHLPVTIEFMPKEKAGGIVDLSKLPDDASDTLRIVRIGDYDA----- 117

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             C G+HV++T EI    +++      G  R+  
Sbjct: 118 CACIGSHVANTSEIGHFKLLN-YDYADGRLRLRF 150


>gi|301310673|ref|ZP_07216612.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 20_3]
 gi|300832247|gb|EFK62878.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 20_3]
          Length = 153

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+A H+L+  +  + G   S+N + I     + D   ++  ++  
Sbjct: 4   EIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKN-AHIERKKSKCDYLLAEEPSAEV 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  +E  +N++I ++LPV    M +E A      + L    +D +R+V +   D      
Sbjct: 63  MAEVEKKINEVIDRHLPVTIEFMPKEKAGGIVDLSKLPDDASDTLRIVRIGDYDA----- 117

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             C G+HV++T EI    +++      G  R+  
Sbjct: 118 CACIGSHVANTSEIGHFKLLN-YDYADGRLRLRF 150


>gi|57640919|ref|YP_183397.1| alanyl-tRNA synthetase-related protein (partial) [Thermococcus
           kodakarensis KOD1]
 gi|57159243|dbj|BAD85173.1| alanyl-tRNA synthetase-related protein (partial) [Thermococcus
           kodakarensis KOD1]
          Length = 215

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 31/227 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + +  +   ++ DQT FY   GGQ  D G   G  +     D +       V H 
Sbjct: 14  KEAKAKVLEVRDNALLLDQTIFYPTGGGQPHDRGTINGVEVLDVYKDEEG-----NVWHV 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGL 617
           + E  + +    + L ID+  R +L   HSA HLL H L+ +LG    +  GS ++ +  
Sbjct: 69  VAEPEMFKVGDEVELKIDWDYRYKLMRIHSAMHLLDHVLNEVLGKGKWKPYGSGMSYEKG 128

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R+D+ + + +     + I +  N  + +   +                           R
Sbjct: 129 RYDIEYPENVN-QYKEKIIELFNRYVDEGGEMKIWW-------------------EGETR 168

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +  +            CGGTHV    EI  L  +  SS+  G +R+E
Sbjct: 169 LTQIR-----DFEVIPCGGTHVRDIKEIGHLKKLKRSSLGRGKQRLE 210


>gi|240103692|ref|YP_002960001.1| Alanyl-tRNA synthetase related protein [Thermococcus gammatolerans
           EJ3]
 gi|239911246|gb|ACS34137.1| Alanyl-tRNA synthetase related protein [Thermococcus gammatolerans
           EJ3]
          Length = 213

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 83/225 (36%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   + +  ++  ++ DQT FY   GGQ  D G   G  +     D +       V H +
Sbjct: 14  EAKAKVLEVKENALLLDQTIFYPTGGGQPHDRGWINGVEVLDVYKDEEG-----NVWHVV 68

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E    +    + L ID+  R +L   HSA HLL H L+ +L       GS ++ +  R+
Sbjct: 69  KEPEKFKPNQEVELKIDWDYRYKLMRIHSAMHLLEHVLNLVLPGKWELYGSGMSVEKGRY 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+ + + +     + I +  N ++ +   +                           R  
Sbjct: 129 DILYPENVNK-WKQEIIETFNRLVDEGGEMKIWW-------------------EGETRYT 168

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            +            C GTHV    EI  L     SS+  G +R+E
Sbjct: 169 QIR-----DFEVIPCAGTHVRDIREIGHLKKFKRSSLGKGKQRLE 208


>gi|302891482|ref|XP_003044623.1| hypothetical protein NECHADRAFT_98240 [Nectria haematococca mpVI
           77-13-4]
 gi|256725547|gb|EEU38910.1| hypothetical protein NECHADRAFT_98240 [Nectria haematococca mpVI
           77-13-4]
          Length = 262

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHH 557
           + + +  S     +V   T FYA+ GGQ  DTG            +T VQK   G  +H 
Sbjct: 39  KKIFKGASDDGCLIVTSSTIFYAKGGGQPSDTGTMTSLDQTSTFTVTSVQKLPSGTIMHL 98

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                   + +M +   I+   R+  S  H A H+L  A+  +    + +  +   PD  
Sbjct: 99  GTYSGNPFQEKMLVAQKINKDARKLHSQIHDAGHILALAVRRLGIPDLREVKAQHYPDVA 158

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT-KYNDRV 676
             +          E   IE   N+I+  +  +  R  + E+  A            ND +
Sbjct: 159 FVEFQGIIGGDKKEE--IERIANEIVGHDRSIAVRWWSPEELKAKSWTMPEDIGDGNDLI 216

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           R V +E E        +CGGTHV ST  +  L +      + GI +I  
Sbjct: 217 RAVEIEGEGAY-----MCGGTHVKSTALVGKLKVRKIKR-QQGITKISY 259


>gi|198275260|ref|ZP_03207791.1| hypothetical protein BACPLE_01419 [Bacteroides plebeius DSM 17135]
 gi|198271843|gb|EDY96113.1| hypothetical protein BACPLE_01419 [Bacteroides plebeius DSM 17135]
          Length = 153

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+  H+++  +  + G       + I     + D   S+ ++  +
Sbjct: 4   EIQLNAHNKQEYPPMHTCEHIINRTMVNLFGCGR-AVSAHIERKKSKLDFALSQALSEDD 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  IE  VN++IA++LPV T  + +E+A        L    ++ VRVV V   D      
Sbjct: 63  IARIETTVNEVIARHLPVTTEFITQEEATGRFDMKRLPEGASETVRVVHVGDYDE----- 117

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            LC G HV +T EI    I+S      GI R+  
Sbjct: 118 CLCIGQHVENTSEIGTFKIISH-DFNDGIFRMRF 150


>gi|145332595|ref|NP_001078163.1| ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA
           and related compounds / nucleic acid binding /
           nucleotide binding [Arabidopsis thaliana]
          Length = 256

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
              ++ ++ + T F+ + GGQ  DTG  +  G  L+ +    +++   V H  V  G   
Sbjct: 30  QDGRIALILESTVFHPQGGGQPSDTGLIVFSGSDLKFSVQDVRSKDGIVLHYGVFEGSNP 89

Query: 567 -------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      + LT+D   R+  S  HSA HLL   +  +   H+        PDG   
Sbjct: 90  ESGIDSEKGKEVYLTVDESRRKLNSRLHSAGHLLDMCMQKVGLGHLEPGKGYHFPDGPFV 149

Query: 620 DV--THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRV 676
           +   +  +     + K +E   N++I++   V   I+  E+A    G +           
Sbjct: 150 EYKGSVPQEEFQVKQKELEAEANELISKGGKVYAAILPYEEASVLCGGSLPDYISKGSTP 209

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           R++ +    G       CGGTHVS+  +I+ + I    + +   +    I 
Sbjct: 210 RIIKLGDSPG-----CPCGGTHVSNLSDIISMKITQMRTKKGMTKVFYTIA 255


>gi|254172499|ref|ZP_04879174.1| alanyl-trna synthetase domain protein [Thermococcus sp. AM4]
 gi|214033428|gb|EEB74255.1| alanyl-trna synthetase domain protein [Thermococcus sp. AM4]
          Length = 213

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 72/212 (33%), Gaps = 30/212 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ DQT FY   GGQ  D G   G  +     D +       V H + E    +    + 
Sbjct: 27  LLLDQTIFYPTGGGQPHDRGTINGIEVLDVYKDDEG-----NVWHVVAEPEKFKPGDEVE 81

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID+  R +L   HSA HLL H L+ +L       GS ++ +  R+D+ + +       
Sbjct: 82  LKIDWDYRYKLMRIHSAMHLLEHVLNLVLPGKWELYGSGMSVEKGRYDILYPE------- 134

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
                                         G   +         ++              
Sbjct: 135 ----------NVNQWKEQIIETFNRLVDEGGEMKIWWEGEKRLTQIR--------DFEVI 176

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            CGGTHV    EI  L     SS+  G +R+E
Sbjct: 177 PCGGTHVRDIKEIGHLKKFKRSSLGKGKQRLE 208


>gi|302423985|ref|XP_003009819.1| tRNA_SAD domain-containing protein [Verticillium albo-atrum
           VaMs.102]
 gi|261361653|gb|EEY24081.1| tRNA_SAD domain-containing protein [Verticillium albo-atrum
           VaMs.102]
          Length = 265

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHA 558
           + A       V  DQT FYA+ GGQ  DTG           +  +T V+K  EG  +H  
Sbjct: 41  KTASEND-FLVATDQTFFYAQGGGQPADTGTMTSMITGDAAKFHVTGVRKTTEGTILHLG 99

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG--SHVSQNGSCITPDG 616
             E         +   ID   RR  S  H A H++  A+  +      +++  +   PD 
Sbjct: 100 SFEDSPFEKSDLVTQKIDMDKRRLHSKIHDAGHIISSAVRKLADAIPDITELKAQHYPDS 159

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
              +      I       IE   N +I +NLP+      +E+ + +  +        +  
Sbjct: 160 AFVEFKGF--IDGKHKADIEAAANALIDENLPIKVCYWTQEELVRACWSVPETLVLPEGE 217

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
              +V+ E  G +    CGGTH+++TGE+  + I +    + GI +I  
Sbjct: 218 LARAVDIEGAGAY---ACGGTHMATTGEVGHVRIRNIKR-QKGISKISY 262


>gi|261408995|ref|YP_003245236.1| hypothetical protein GYMC10_5219 [Paenibacillus sp. Y412MC10]
 gi|261285458|gb|ACX67429.1| hypothetical protein GYMC10_5219 [Paenibacillus sp. Y412MC10]
          Length = 565

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 33/174 (18%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           R  L  + ++LK      K      + ++EE  +E  KL     ++   L+       + 
Sbjct: 199 RKKLQEKLDELKKALEQEK-HPEQALEKLEEAMKELEKLAKQQEEKAKALSELAKQMQQE 257

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
             ++ +   ++E  + ELK  M  L ++++        +S+E+K         +L D   
Sbjct: 258 KALSQVGKKLAEGMADELKQEMKKLTEQVKK-------MSQEEK--------NELSDALK 302

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQ----SG-----GPNGNKADQAIAGVASFL 896
              LA  +AK +  G       + Q    +      G    + ++A+  +A  L
Sbjct: 303 --KLAEEAAKQMEDGK------LEQELQNAADALKEGKLPKELEEALQQLAEEL 348


>gi|237713560|ref|ZP_04544041.1| alanyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262406342|ref|ZP_06082891.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|229446282|gb|EEO52073.1| alanyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262355045|gb|EEZ04136.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22]
          Length = 162

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 7/162 (4%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           + T + +           ++  H+A HLL+  +    G   S+N + I     + D   S
Sbjct: 1   METNIEINKPSPKFQDVSIAPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILS 59

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
              T+ +++SIE+ VN+ I+QNLPV    M  E A      + L    +  +R+V +   
Sbjct: 60  SCPTAEQIQSIEETVNEAISQNLPVTIEYMTHEQAKDIVDLSKLPADASPTLRIVRIGDY 119

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
           D        C G HVS+T E+     I  +        R+  
Sbjct: 120 DA-----CACIGLHVSNTSEMGTFKIISYDYDEERQTLRMRF 156


>gi|329928933|ref|ZP_08282743.1| putative phage tail tape measure protein, lambda family
           [Paenibacillus sp. HGF5]
 gi|328937185|gb|EGG33612.1| putative phage tail tape measure protein, lambda family
           [Paenibacillus sp. HGF5]
          Length = 563

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 33/174 (18%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           R  L  + ++LK      K      + ++EE  +E  KL     ++   L+       + 
Sbjct: 199 RKKLQEKLDELKKALEQEK-HPEQALEKLEEAMKELEKLAKQQEEKAKALSELAKQMQQE 257

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
             ++ +   ++E  + ELK  M  L ++++        +S+E+K         +L D   
Sbjct: 258 KALSQVGKKLAEGMADELKQEMKKLTEQVKK-------MSQEEK--------NELSDALK 302

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQ----SG-----GPNGNKADQAIAGVASFL 896
              LA  +AK +  G       + Q    +      G    + ++A+  +A  L
Sbjct: 303 --KLAEEAAKQMEDGK------LEQELKKAADALKEGKLPKELEEALQQLAEEL 348



 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 34/164 (20%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
               EKL  L   L   Q       +E++ E  ++L+ +  +++ +         ++   
Sbjct: 200 KKLQEKLDELKKAL--EQEKHPEQALEKLEEAMKELEKLAKQQEEKAKALSELAKQMQQE 257

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +S     V  K  + + D L+++++     +  +S+E+K         +L D      
Sbjct: 258 KALSQ----VGKKLAEGMADELKQEMKKLTEQVKKMSQEEK--------NELSDALK--K 303

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           LA  +AK +  G                 K +Q +   A  LK+
Sbjct: 304 LAEEAAKQMEDG-----------------KLEQELKKAADALKE 330


>gi|169829320|ref|YP_001699478.1| hypothetical protein Bsph_3872 [Lysinibacillus sphaericus C3-41]
 gi|168993808|gb|ACA41348.1| hypothetical protein Bsph_3872 [Lysinibacillus sphaericus C3-41]
          Length = 62

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GG RP MA +G  + +K D+A+  V  ++K
Sbjct: 31  GGVRPDMAMAGAKDASKLDEALLSVYDYVK 60


>gi|294643224|ref|ZP_06721050.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides ovatus SD CC 2a]
 gi|294806650|ref|ZP_06765484.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides xylanisolvens SD CC 1b]
 gi|292641347|gb|EFF59539.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides ovatus SD CC 2a]
 gi|294446186|gb|EFG14819.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 141

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 7/141 (4%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+A HLL+  +    G   S+N + I     + D   S   T+ +++SIE+ VN+ I+Q
Sbjct: 1   MHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPTAEQIQSIEETVNEAISQ 59

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NLPV    M  E A      + L    +  +R+V +   D        C G HVS+T E+
Sbjct: 60  NLPVTIEYMTHEQAKDIVDLSKLPADASPTLRIVRIGDYDA-----CACIGLHVSNTSEM 114

Query: 706 MLLY-IVSESSIRAGIRRIEA 725
                I  +        R+  
Sbjct: 115 GTFKIISYDYDEERQTLRMRF 135


>gi|321465111|gb|EFX76114.1| hypothetical protein DAPPUDRAFT_249385 [Daphnia pulex]
          Length = 164

 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 26/138 (18%)

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y   V V+++   D  +       GTHVS+   + L Y                      
Sbjct: 41  YVGPVHVITILGVDSNMR-----CGTHVSNPSHLQLFYTKK------------------- 76

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
             ++    E    L   LK    ++V     +    +  Q        +     +     
Sbjct: 77  -DYINHLLESESQLTKILKNGPEDLVDLANNLQASVKLSQKEETNINEKSKFAIIHSKD- 134

Query: 792 ADVNFMSHIISEVDSKEL 809
            D ++ S +ISE+D +EL
Sbjct: 135 GDTDYASVLISEMDFEEL 152


>gi|298387362|ref|ZP_06996915.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 1_1_14]
 gi|298260031|gb|EFI02902.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 1_1_14]
          Length = 162

 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 7/162 (4%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           + T + +           ++  H+A HLL+  +    G   S+N + I     + D    
Sbjct: 1   METNIEINKPSPKFQDVSIAPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILP 59

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
              T AE+++IED VN++I+QNLPV    M  E A      + L    ++ +R++ +   
Sbjct: 60  TCPTDAEIQAIEDKVNEVISQNLPVTVEFMTHEQAKGIVDLSKLPADASETLRIIRIGDY 119

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
           D        C G HVS+T E+     I  + +      R+  
Sbjct: 120 DA-----CACIGLHVSNTSEVGTFKIISHDYNEERQTLRLRF 156


>gi|119485815|ref|XP_001262250.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
 gi|119410406|gb|EAW20353.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
          Length = 277

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 75/228 (32%), Gaps = 21/228 (9%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ-----ITDVQKKAEGIFVHHAIVE 561
           + +   V+ +QT F+ + GGQ  D G                 D  ++ + +        
Sbjct: 45  TDEDYAVITEQTIFHPQGGGQPSDEGTMTNASGVAFTVAAVRMDAVREGQVLHFGRFNPT 104

Query: 562 RGI----LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                       ++  TID   R   S  H+A H+L  A+  +L   V            
Sbjct: 105 SSSSSSVFSEGDAVEQTIDADKRLLYSRLHTAGHVLGAAVRHLLEKEVEGFDELKASHFP 164

Query: 618 RFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----- 671
                  +     + K  I+  VN+ I   LPV     + ++    G   LL  +     
Sbjct: 165 DAAACEFQGAIDGKWKDPIQAKVNEFIDAKLPVEVDWWDEDEFRRRGLERLLPDRGSVAI 224

Query: 672 -YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
              ++ RVV++   +        CGGTHV +T       +   +    
Sbjct: 225 APGEKFRVVNIVGAEVY-----PCGGTHVDTTDLCGSTTVRKITRKAG 267


>gi|222479402|ref|YP_002565639.1| Threonyl/alanyl tRNA synthetase SAD [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452304|gb|ACM56569.1| Threonyl/alanyl tRNA synthetase SAD [Halorubrum lacusprofundi ATCC
           49239]
          Length = 293

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 88/260 (33%), Gaps = 50/260 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRL-------------QITDVQKKAEGIFVHHAI 559
           VV DQT FY   GGQ  DTG        +             +   V    +   V+H +
Sbjct: 27  VVLDQTHFYPTGGGQPHDTGTLRVADAEMADGDGVADGDDADRRWRVVDVEKKDTVYHTL 86

Query: 560 VERG----------------ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
              G                 L     +V  ID   RR  S  H+A HLL   L  +   
Sbjct: 87  EPAGDGASGAGDDSATDTVAPLEPGTVVVGEIDAARRRAHSRYHTAQHLLSALL--LAEF 144

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA---- 659
             S  G+ +  D    D    +     +L  IE  +N+++A   PV +  MNRE+A    
Sbjct: 145 DASTTGNQLYDDHAHLDAA-YERFDDGDLVQIETRLNELVADERPVTSYTMNREEAEATL 203

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG--------------GVHSSALCGGTHVSSTGEI 705
                   L       +R+V +    G                +    C GTHV++T EI
Sbjct: 204 DTDRTRIDLLPDSISELRIVEIGAARGTDGNDGDDGDDGNKEPYDRTACAGTHVANTAEI 263

Query: 706 MLLYIVSESSIRAGIRRIEA 725
             + +    +  +   R+  
Sbjct: 264 GPIVVTGRETKGSDEDRVRF 283


>gi|224540053|ref|ZP_03680592.1| hypothetical protein BACCELL_04966 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518331|gb|EEF87436.1| hypothetical protein BACCELL_04966 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 155

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+  H+++  +  + G       + I     + D       T  +
Sbjct: 4   QIQLNDHNKQEYPPMHTCEHIVNRTMMNLFGCGR-SVSAHIERKKSKLDYALETAPTEED 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +K +E+ VN +IAQ L V T  + +E+A        L    ++ VR+V V   D      
Sbjct: 63  VKRLEEAVNAVIAQGLDVTTEFITQEEAQGRFDLKRLPEDASETVRIVKVGNYDE----- 117

Query: 692 ALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
            LC GTHV +T E+     I  + +  A   R+  
Sbjct: 118 CLCLGTHVKNTSEVGTFKVISHDWNEEAKRWRMRF 152


>gi|187251838|ref|YP_001876320.1| threonyl and alanyl tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|186971998|gb|ACC98983.1| Threonyl- and alanyl-tRNA synthetase second additional domain
           [Elusimicrobium minutum Pei191]
          Length = 151

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 7/146 (4%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           +      H+A H+L+  +    G       + I     + D        + ++  IE  V
Sbjct: 9   KDYFEPMHTAEHILNRTMVNAFGC-ARSKNAHIEKSKSKCDYFLPSAPAAEQIAEIEKIV 67

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N IIA+NL V+ + M R +       + L     D +RV+ V   D        C G HV
Sbjct: 68  NKIIAENLDVIEKFMPRAEVSKIADISKLPESAGDMLRVIFVGDYD-----VCPCIGKHV 122

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEA 725
            +T EI    I +      G  RI  
Sbjct: 123 KNTAEIGRFKITTW-DYENGRLRIRY 147


>gi|145361275|ref|NP_683570.3| ATP binding / alanine-tRNA ligase/ nucleic acid binding /
           nucleotide binding [Arabidopsis thaliana]
          Length = 253

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 15/222 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
              ++ ++ + T F+ + GGQ  DTG  +  G  L+ +    +++   V H  V  G   
Sbjct: 30  QDGRIALILESTVFHPQGGGQPSDTGLIVFSGSDLKFSVQDVRSKDGIVLHYGVFEGSNP 89

Query: 567 -------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      + LT+D   R+  S  HSA HLL   +  +   H+        PDG   
Sbjct: 90  ESGIDSEKGKEVYLTVDESRRKLNSRLHSAGHLLDMCMQKVGLGHLEPGKGYHFPDGPFV 149

Query: 620 DV--THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRV 676
           +   +  +     + K +E   N++I++   V   I+  E+A    G +           
Sbjct: 150 EYKGSVPQEEFQVKQKELEAEANELISKGGKVYAAILPYEEASVLCGGSLPDYISKGSTP 209

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           R++ +    G       CGGTHVS+  +I+ + + ++  +  
Sbjct: 210 RIIKLGDSPG-----CPCGGTHVSNLSDIISMKMRTKKGMTK 246


>gi|217072496|gb|ACJ84608.1| unknown [Medicago truncatula]
          Length = 258

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 79/228 (34%), Gaps = 15/228 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH-------AI 559
              +  ++ D+T FY + GGQ  DTG  I     ++      +++   V H         
Sbjct: 32  DDGRHVLILDRTIFYPQGGGQPADTGFLIIHDSNIKFVVHDVRSKDGIVLHYGVFEGMGG 91

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP--DGL 617
              G L     + L++D   R+     HSA HLL   L  I   H+    +        +
Sbjct: 92  EFEGTLEKGKEVSLSVDEDRRKLNFRLHSAGHLLDICLPKIGLGHLEPGKAYHFSDGPWV 151

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRV 676
            +     +     + K +E   N +I+    V   I+  ++A    G             
Sbjct: 152 EYKGVVPQNEMQNKQKELEIEANALISMGGKVSADILLYDEAAKLCGGILPDYVPKESTP 211

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           R+V +    G       CGGTHV    +I  + +    S +   +   
Sbjct: 212 RIVQIGDNPG-----CPCGGTHVLDVSDITKIKVSQIRSKKGMTKVFY 254


>gi|70931454|ref|XP_737408.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56512774|emb|CAH84853.1| hypothetical protein PC301267.00.0 [Plasmodium chabaudi chabaudi]
          Length = 68

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 2  SNVSSIRTTFLEFFQKNGHELLPSSSLIPCN 32
               +R  F+ +F+   H ++ S+S+IP N
Sbjct: 38 MTSEQVRNNFINYFKNKNHTVVDSASVIPYN 68


>gi|330816733|ref|YP_004360438.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia gladioli BSR3]
 gi|327369126|gb|AEA60482.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia gladioli BSR3]
          Length = 244

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 82/226 (36%), Gaps = 22/226 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILR 566
            +  +  ++T FY   GGQLGDTG                + +  G      +      +
Sbjct: 24  DESGLTLERTVFYPHGGGQLGDTGVITLGDGSRLAIADARKSQLPGATPDDVLHVPAPDQ 83

Query: 567 --------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                       + + ID+  R ++   H+A+HL+  AL          +G  ITPD  R
Sbjct: 84  LAVLSKLAVGDEVAIEIDWARRNRMMRLHTASHLMCGALPY------PVDGCSITPDYAR 137

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVR 677
            D   S+P+   E+ +      +               + +       ++        VR
Sbjct: 138 LDFVTSEPLARDEIDATLAKWVEAARAVTIEQISDEALQANPDLVRTMSVKPPSGFGSVR 197

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +V ++  D        CGGTHV++T EI  +++       A  RR+
Sbjct: 198 LVRIDGID-----LQPCGGTHVANTAEIGPIHVTKMEKKTARTRRV 238


>gi|48477850|ref|YP_023556.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|48430498|gb|AAT43363.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 237

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 72/221 (32%), Gaps = 6/221 (2%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           +    +  ++  DQ+ F+    G+  D G    +G    I DV +  E I +  ++    
Sbjct: 19  KVTMVEFTDMTVDQSVFFPTRAGEPNDKGTVTINGKDYVIVDVWEDGENIHL-ISLDTYP 77

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                 ++   ID+  R       SA  L+         +    N +      +   V  
Sbjct: 78  QDIAGQTVHQKIDWDVRYNHMRYRSALFLISGIAYKFYNARCRMNQTYEDNAWIDVYVDE 137

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                  +L+ I+  +  II   + +    ++R++   +     L          + +  
Sbjct: 138 MN---EEKLEKIKTEMKKIIESGIDINASYISRDEFTKNSQLMNLSKDKMPEGDNIRIIN 194

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             G         G HV +T EI    I +  +     RR+ 
Sbjct: 195 ISG--LPMQPDNGVHVKNTREIGDFEITTTMAKGKMERRLT 233


>gi|313202649|ref|YP_004041306.1| threonyl/alanyl tRNA synthetase sad [Paludibacter propionicigenes
           WB4]
 gi|312441965|gb|ADQ78321.1| Threonyl/alanyl tRNA synthetase SAD [Paludibacter propionicigenes
           WB4]
          Length = 151

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 7/152 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            I+   +      H+  H+L+  +  + G       + I     + D   S+  T  ++ 
Sbjct: 4   IINQPKKDYCEPMHTCEHILNQTMIRMFGC-PRSMNAHIEKKKSKCDYVLSEAPTEEQIS 62

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            + D VN +I Q+LPV    M+R+DA      + L     + +R++ V   D        
Sbjct: 63  ELVDKVNAVINQHLPVTIDFMDRKDAAQLVDLSKLPADATETLRIIRVGDYDA-----CA 117

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           C G HVS+T E+    I+S         R+  
Sbjct: 118 CIGQHVSNTAELGRFEIISH-DFENNRWRVRF 148


>gi|317480009|ref|ZP_07939122.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316903808|gb|EFV25649.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 155

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ++  N+++    H+  H+++  +  + G   S + + I     + D   +   T  E
Sbjct: 4   QPHLNDHNKQEYPPMHTTEHIINQTMIRLFGCGRSIS-AHIERKKSKLDYRLAACPTEEE 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +K +E+ VN++IA+ LP+ T  + +E+A        L    ++ VRVV V   D      
Sbjct: 63  IKKLEEAVNEVIARQLPITTEFITQEEAQGRFDLERLPDGASETVRVVKVGDYDE----- 117

Query: 692 ALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
            LC G HV +T EI     I  + +  A   R+  
Sbjct: 118 CLCIGVHVENTSEIGTFKIISHDWNEEAKRWRMRF 152


>gi|255942495|ref|XP_002562016.1| Pc18g01720 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586749|emb|CAP94396.1| Pc18g01720 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 264

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 89/238 (37%), Gaps = 13/238 (5%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT----GCAIGDGIRLQITDVQ 547
           + ++ ++ + + + V  +   +   QT FYA+ GGQ  DT             +      
Sbjct: 28  ITSLSEEEKGLAKNVPAEDNAITMRQTIFYAQGGGQPSDTGAIGPVDQDPTFEVSAVRKT 87

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
                +     +          S+V  +D   R   S  H+A H++      +L     +
Sbjct: 88  PDGRFLHFGKFLDATSSFVVGQSVVQKVDDSKRNYHSRLHTAGHIV-GLAMQLLMPEKKK 146

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
             +   P     +      + +     I++ V++++  +LP++   +     +  G  A 
Sbjct: 147 VKANHFPREASMEY--EGLLYNEHKPVIQEKVDELVRLDLPILISWLQGGALVGDGEGAE 204

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            G  ++ R R+ S+   D        CGGTHV+ T  +  + I   S  + GI R+  
Sbjct: 205 EGRSHDGRTRIASIGGLDHN-----PCGGTHVARTSLVGSVVIRKISR-QKGISRVSY 256


>gi|302762474|ref|XP_002964659.1| hypothetical protein SELMODRAFT_406072 [Selaginella moellendorffii]
 gi|300168388|gb|EFJ34992.1| hypothetical protein SELMODRAFT_406072 [Selaginella moellendorffii]
          Length = 256

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 22/245 (8%)

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
             ++ V +I +  E V          +V D+T  Y + GGQ  D G              
Sbjct: 25  QATAKVLSITKDSERVA---------IVSDRTILYPQGGGQPADRGSISSLNGDTTFQVQ 75

Query: 547 QKKAEGIFVHHAIVERGILRT---EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             + +   V+H  V      T      + L ++ Q R   S  H+A HL+   +  +  +
Sbjct: 76  DTRMKNGVVYHYGVFEPSDSTFEAGQEVTLRVESQRRELHSRLHTAGHLIDVCMKLVGRT 135

Query: 604 HVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
                G+  +P+G   +           +   +++  ++ +IA    V   +++ ++A  
Sbjct: 136 LEPAKGNH-SPEGAFVEYIGAIPSGEIESTRVALQKEIDRLIASGASVNASVLSYDEAAG 194

Query: 662 -SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             G +       +   R+V +    G       CGGTHV     +  L +     ++ G+
Sbjct: 195 LCGGSLPDYISKDSSPRIVRIGDHTG-----CPCGGTHVDDVSSLTGLKVTQI-RVKKGV 248

Query: 721 RRIEA 725
            ++  
Sbjct: 249 TKVSY 253


>gi|242804518|ref|XP_002484391.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218717736|gb|EED17157.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 324

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 78/230 (33%), Gaps = 20/230 (8%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ-----ITDVQKKAEGIFVHHA 558
           +    +   VV ++T F+ + GGQ  D G  IG    +        D     + + + + 
Sbjct: 91  KIGGNEDYVVVTEKTIFHPQGGGQPCDVGSMIGSTGLIFTVTAVRMDAVYDGQVMHLGNF 150

Query: 559 IVERG-----ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
             E          +  ++   ID   R   S  H+A H+L  ++  ++ + V        
Sbjct: 151 KSEDAASSVKTFNSGENIQQAIDVDKRLLYSRLHTAGHVLGASVRHLVKNEVKDFAELKA 210

Query: 614 PDG-LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK- 671
                         I      +I+  V+D IA  L V     +  +    G   ++    
Sbjct: 211 SHFPGAAACEFQGLIDGKWKDAIQQKVDDSIAAKLLVSVEWWDENEFRRRGLDYMIPDSS 270

Query: 672 ---YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                ++ RVV++   D        CGGTHV +T       +   +  + 
Sbjct: 271 LVAPGEKFRVVNIAGLDVY-----PCGGTHVETTDLCGRTTVRKITRKQG 315


>gi|160885717|ref|ZP_02066720.1| hypothetical protein BACOVA_03721 [Bacteroides ovatus ATCC 8483]
 gi|156108530|gb|EDO10275.1| hypothetical protein BACOVA_03721 [Bacteroides ovatus ATCC 8483]
          Length = 158

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T+ +
Sbjct: 4   QIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPTAEQ 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++SIED VN++I+QNLPV    M  E A      + L    ++ + +V +   D      
Sbjct: 63  IQSIEDRVNEVISQNLPVTVEFMTHEQAKDIVDLSKLPADASETLHIVRIGDYDA----- 117

Query: 692 ALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
             C G HVS T E+     I  +        RI  
Sbjct: 118 CACIGLHVSHTSEVGTFKIISYDYDEERQTLRIRF 152


>gi|88607554|ref|YP_505644.1| alanyl-tRNA synthetase domain-containing protein [Anaplasma
           phagocytophilum HZ]
 gi|88598617|gb|ABD44087.1| alanyl-tRNA synthetase domain protein [Anaplasma phagocytophilum
           HZ]
          Length = 94

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + +  +  K+ + ++ V E  + R  A D+ +   ++   G GGG   +A++ 
Sbjct: 18  VAISTTDGKRTTFIVGVGESAIKRIKATDIVKALQQI--QGKGGGNASIARAS 68


>gi|262368192|pdb|3KEW|A Chain A, Crystal Structure Of Probable Alanyl-Trna-Synthase From
           Clostridium Perfringens
 gi|262368193|pdb|3KEW|B Chain B, Crystal Structure Of Probable Alanyl-Trna-Synthase From
           Clostridium Perfringens
          Length = 241

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 19/234 (8%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++   ++    
Sbjct: 18  GEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEEEGKVYHVLE 73

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                  +   +L   +D++ R      H   HLL      +     +  G  +  +   
Sbjct: 74  K----EPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLF--GANTCGFHLGKEIST 127

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+     +    ++  E   N +I +NL V +   ++++         L    ++ +R+
Sbjct: 128 VDIVGF--LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALPKT-DEEIRI 184

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           V +   D        C G H  +T ++ ++ I           RIE + G RA 
Sbjct: 185 VEIVGLD-----LNACCGVHPRNTRDLQVIKIRRWE-KHKNATRIEYVAGNRAV 232


>gi|18976458|ref|NP_577815.1| partial alanyl-tRNA synthetase matches COOH terminus [Pyrococcus
           furiosus DSM 3638]
 gi|18891997|gb|AAL80210.1| partial alanyl-tRNA synthetase matches COOH terminus [Pyrococcus
           furiosus DSM 3638]
          Length = 214

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 86/227 (37%), Gaps = 31/227 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + +  +   ++ DQT FY   GGQ  D G   G  +     D +       V H 
Sbjct: 13  KEAKAKVLEVKDNALLLDQTIFYPTGGGQPHDRGWINGVEVLDVYKDEEG-----NVWHV 67

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN-GSCITPDGL 617
           + E    +    + L +D++ R +L   HSA HLL + L  ILG    +  GS +T +  
Sbjct: 68  VKELEKFKPGDEVELKLDWEYRYKLMRIHSALHLLENVLDQILGKGNWEVVGSGMTHEKG 127

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R DV + + + +   + I +  N  + +   +                           R
Sbjct: 128 RLDVGYPENLNA-YKEKIIELFNRYVDEGGEIKIWW-------------------EGEKR 167

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              +   D        CGGTHV    EI  +  +  SSI  G +R+E
Sbjct: 168 YTQIRDFD-----PIPCGGTHVKDIREIGHIKKLKRSSIGRGKQRLE 209


>gi|302815607|ref|XP_002989484.1| hypothetical protein SELMODRAFT_428079 [Selaginella moellendorffii]
 gi|300142662|gb|EFJ09360.1| hypothetical protein SELMODRAFT_428079 [Selaginella moellendorffii]
          Length = 236

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 89/245 (36%), Gaps = 22/245 (8%)

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
             ++ V +I +  E V          +V D+T  Y + GGQ GD G              
Sbjct: 5   QATAKVLSITKDSERVA---------IVSDRTILYPQGGGQPGDRGSISSLNGDTTFQVQ 55

Query: 547 QKKAEGIFVHHAIVERGILRT---EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             + +   V+H  V      T      + L ++ Q R   S  H+A HL+   +  +  +
Sbjct: 56  DTRMKNGVVYHYGVFEPSDSTFEAGQEVSLRVESQRRELHSRLHTAGHLIDVCMKLVGRT 115

Query: 604 HVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
                G+  +P+G   +           +   +++  ++ +IA    V   ++  ++A  
Sbjct: 116 LEPAKGNH-SPEGAFVEYIGAIPSGEIESTRVALQKEIDRLIASGASVNASVLPYDEAAG 174

Query: 662 -SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             G +       +   R+V +    G       CGGTHV     +  L +     ++ G+
Sbjct: 175 LCGGSLPDYISKDSSPRIVRIGDHTG-----CPCGGTHVDDVSSLTGLKVTQI-RVKKGV 228

Query: 721 RRIEA 725
            ++  
Sbjct: 229 TKVSY 233


>gi|160889513|ref|ZP_02070516.1| hypothetical protein BACUNI_01937 [Bacteroides uniformis ATCC 8492]
 gi|270296644|ref|ZP_06202843.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156861030|gb|EDO54461.1| hypothetical protein BACUNI_01937 [Bacteroides uniformis ATCC 8492]
 gi|270272631|gb|EFA18494.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 155

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ++  N+++    H+  H+++  +  + G   S + + I     + D   +   T  E
Sbjct: 4   QPHLNDHNKQEYPPMHTTEHIINQTMIRLFGCGRSIS-AHIERKKSKLDYLLAACPTEEE 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +K +E+ VN++IA+ LPV T  + +E+A        L    ++ VRVV V   D      
Sbjct: 63  IKKLEEAVNEVIARQLPVTTEFITQEEAQGRFDLERLPDGASETVRVVKVGDYDE----- 117

Query: 692 ALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
            LC G HV +T EI     I  +    A   R+  
Sbjct: 118 CLCIGVHVENTSEIGTFKIISHDWDEEAKRWRMRF 152


>gi|258564985|ref|XP_002583237.1| hypothetical protein UREG_06204 [Uncinocarpus reesii 1704]
 gi|237906938|gb|EEP81339.1| hypothetical protein UREG_06204 [Uncinocarpus reesii 1704]
          Length = 1483

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 15/123 (12%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN------VVGRVEEIWEEYRKLQLIHA 775
            R+E    + A  +L     ++K LA+ LK S  +      +  R+ ++  E  +L+   A
Sbjct: 1032 RLEI---ESAGRNLADAKRRVKELAAELKPSNNDDTRAGPLEKRIAKLETEINQLRAEKA 1088

Query: 776  KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              + ++        +I  V              LK  +  L +++ S  +     SK +K
Sbjct: 1089 GIEEEIQALQDKIMEIGGVKLRGQKAK---VDGLKEQISLLTEEVSSAEV---SKSKNEK 1142

Query: 836  ASV 838
              V
Sbjct: 1143 LRV 1145


>gi|225432302|ref|XP_002273600.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 256

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 10/229 (4%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
              +  ++ D T F+ + GGQ  DTG        ++      +++   V H         
Sbjct: 30  DDGRRALILDSTIFHPQGGGQPSDTGFIAISESDIKFIVQDVRSKDGVVFHYGFIENSNE 89

Query: 567 -------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      + L +D   R+  S  HSA HLL   + T+   ++        PDG   
Sbjct: 90  ELESKLEKGKEVSLHVDESRRKLNSRLHSAGHLLDICMRTVGLGNLEPGKGYHFPDGPFV 149

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           +     P    + K  E  ++     +       +    A A          Y  +    
Sbjct: 150 EYKGVVPQNELQGKQKELELDANALISRGGKVSAVVLPYAEAVELCGGCLPDYIPKSSNP 209

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            +     G +    CGGTHVS   EI+ + +      + G+ ++    G
Sbjct: 210 RILKL--GDNPGCPCGGTHVSDISEIISVKVTQI-RTKKGVTKVYYTIG 255


>gi|297736873|emb|CBI26074.3| unnamed protein product [Vitis vinifera]
          Length = 243

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 76/229 (33%), Gaps = 10/229 (4%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
              +  ++ D T F+ + GGQ  DTG        ++      +++   V H         
Sbjct: 17  DDGRRALILDSTIFHPQGGGQPSDTGFIAISESDIKFIVQDVRSKDGVVFHYGFIENSNE 76

Query: 567 -------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      + L +D   R+  S  HSA HLL   + T+   ++        PDG   
Sbjct: 77  ELESKLEKGKEVSLHVDESRRKLNSRLHSAGHLLDICMRTVGLGNLEPGKGYHFPDGPFV 136

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           +     P    + K  E  ++     +       +    A A          Y  +    
Sbjct: 137 EYKGVVPQNELQGKQKELELDANALISRGGKVSAVVLPYAEAVELCGGCLPDYIPKSSNP 196

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            +     G +    CGGTHVS   EI+ + +      + G+ ++    G
Sbjct: 197 RILKL--GDNPGCPCGGTHVSDISEIISVKVTQI-RTKKGVTKVYYTIG 242


>gi|329960573|ref|ZP_08298940.1| threonine/alanine tRNA ligase second additional domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328532637|gb|EGF59427.1| threonine/alanine tRNA ligase second additional domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 155

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 7/158 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M +           ++  H+  H+++  +        S + + I     + D   +   T
Sbjct: 1   MEINQAAPKFQDVSIAPMHTTEHIINQTMIRQFNCGRSIS-AHIERKKSKLDYLLAACPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E+K +E+ VN +IAQ+LPV T  + +E+A        L    ++ VR+V V   D   
Sbjct: 60  EKEVKQLEETVNAVIAQHLPVTTEFITQEEAKGRFDLERLPEDASETVRIVKVGEYDE-- 117

Query: 689 HSSALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
               LC GTHV++T EI +   I  +        R+  
Sbjct: 118 ---CLCIGTHVANTSEIGIFKIISHDWDEENKRWRMRF 152


>gi|319901999|ref|YP_004161727.1| Threonyl/alanyl tRNA synthetase SAD [Bacteroides helcogenes P
           36-108]
 gi|319417030|gb|ADV44141.1| Threonyl/alanyl tRNA synthetase SAD [Bacteroides helcogenes P
           36-108]
          Length = 155

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 7/153 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ++  N+++    H+  H+++  +  + G       + I     + D       T  E++
Sbjct: 6   QLNEHNKQEYPPMHTTEHIINQTMIRLFGCGR-SVSAHIERKKSKLDYCLRACPTEEEVR 64

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +E+ VN II Q+LPV T ++ +++A        L    ++ VR+V V   D       L
Sbjct: 65  KLEEAVNAIIQQHLPVTTELITQKEAKDYFDLTRLPKDASEAVRIVKVGEYD-----KCL 119

Query: 694 CGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
           C G HVS+T EI     I  +        RI  
Sbjct: 120 CLGAHVSNTSEIGYFQIISHDWDEETKRWRIRF 152


>gi|302815613|ref|XP_002989487.1| hypothetical protein SELMODRAFT_428080 [Selaginella moellendorffii]
 gi|300142665|gb|EFJ09363.1| hypothetical protein SELMODRAFT_428080 [Selaginella moellendorffii]
          Length = 256

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 88/245 (35%), Gaps = 22/245 (8%)

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
             ++ V +I +  E V          +V D+T  Y + GGQ  D G              
Sbjct: 25  QATAKVLSITKDSERVA---------IVSDRTILYPQGGGQPADRGSISSLNGDTTFQVQ 75

Query: 547 QKKAEGIFVHHAIVERGILRT---EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             + +   V+H  V      T      + L ++ Q R   S  H+A HL+      ++G 
Sbjct: 76  DTRMKNGVVYHYGVFEPSDSTFEAGQEVTLRVESQRRELHSRLHTAGHLID-VCMELVGR 134

Query: 604 HVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            +    +  +P+G   +           +   +++  ++ +IA    V   ++  ++A  
Sbjct: 135 TLEPAKANHSPEGAFVEYIGAIPSGEIESTRVALQKEIDRLIASGASVNASVVPYDEAAG 194

Query: 662 -SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             G +       +   R+V +    G       CGGTHV     +  L +     ++ G+
Sbjct: 195 LCGGSLPDYISKDSSPRIVRIGDHTG-----CPCGGTHVDDVSSLTGLKVTQI-RVKKGV 248

Query: 721 RRIEA 725
            ++  
Sbjct: 249 TKVSY 253


>gi|149237218|ref|XP_001524486.1| hypothetical protein LELG_04458 [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146452021|gb|EDK46277.1| hypothetical protein LELG_04458 [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1531

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGN---VVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
                A +     D+ ++ L    K        +V ++  +  + + LQ   ++ K +L+ 
Sbjct: 1142 AKNEALTLKKEHDKTIEDLKQNEKTINEESKVLVKKIAALESDKKSLQNEISELKEKLSQ 1201

Query: 784  EDLSCHKIADVNFMSHIIS------EVDSKELKSVMDALQKKIQSG 823
             +     + D+      +       E+D K L+ V+D  + K++  
Sbjct: 1202 SEKVQEDLKDLKKQFAELEKSKSKLELDLKSLQKVLDD-KSKLEQA 1246



 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQL---IHAKRKLQLNVEDL 786
              L+ +   L+S    L+     +  ++   E++ E+ + L+       K K +L ++  
Sbjct: 1172 KVLVKKIAALESDKKSLQNEISELKEKLSQSEKVQEDLKDLKKQFAELEKSKSKLELDLK 1231

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            S  K+ D       + +  S EL  +++ L+K+ 
Sbjct: 1232 SLQKVLDDK---SKLEQATSNELTDIVEKLKKEN 1262



 Score = 42.8 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 23/119 (19%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK------------ 776
            +RAR  L+  + ++K      K    N+  +++    E +K +    K            
Sbjct: 1039 KRAREDLIHHESEMKEKLDRAKDDIENLEEKIKNFETEIQKKEKELEKHNDLEKQIDRLN 1098

Query: 777  ---------RKLQLNVEDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGI 824
                      K           ++     +   I E++   KE K+    L+K+    I
Sbjct: 1099 TELTNRDEEIKKHQASLSEKEKEVDSKKLLEAKILELEGELKEAKNEALTLKKEHDKTI 1157



 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 45/105 (42%), Gaps = 13/105 (12%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGN------VVGRVEEIWEEYRKLQLIHAKRKLQ-- 780
             R  + L  +DE++K   + L   +        +  ++ E+  E ++ +      K +  
Sbjct: 1095 DRLNTELTNRDEEIKKHQASLSEKEKEVDSKKLLEAKILELEGELKEAKNEALTLKKEHD 1154

Query: 781  LNVEDLSCHKI---ADVNFMSHIISEV--DSKELKSVMDALQKKI 820
              +EDL  ++     +   +   I+ +  D K L++ +  L++K+
Sbjct: 1155 KTIEDLKQNEKTINEESKVLVKKIAALESDKKSLQNEISELKEKL 1199


>gi|26346899|dbj|BAC37098.1| unnamed protein product [Mus musculus]
          Length = 228

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 74/201 (36%), Gaps = 17/201 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV + T  + E GGQ  D G      +        +                L     
Sbjct: 41  FHVVLEDTLLFPEGGGQPDDRGTINDISVLRVTRRGAQAD--------HFTESPLSPGSQ 92

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+      + G   +             ++     +T+ 
Sbjct: 93  VQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSWEL--GRLRSVIELDSPS-VTAE 149

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE +VN  I   LPV  R ++ +D          L   +   +RVV++E  D    
Sbjct: 150 QVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIEGVDSN-- 207

Query: 690 SSALCGGTHVSSTGEIMLLYI 710
              +C GTHVS+  ++ ++ I
Sbjct: 208 ---MCCGTHVSNLSDLQVIKI 225


>gi|313237175|emb|CBY12394.1| unnamed protein product [Oikopleura dioica]
          Length = 2447

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 59/549 (10%), Positives = 149/549 (27%), Gaps = 35/549 (6%)

Query: 303  RIMRRAMCYARLLGYTEPLMMHLLPALCTEMG--------SAYPELIQAKLLIEETLRSE 354
            R + +A+     L                +            Y ++       +E +  E
Sbjct: 1047 RHLAQAIKNQEELTSQLKNHHEQAELALKQYKSELAKKEEDIYQKMTLLDGKQKEIIGLE 1106

Query: 355  DERFGK--TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH-GLPLDIMQDILCARGLA 411
             +   +   +++    +  +       E +    A  +   +  L  D    I    G  
Sbjct: 1107 QQNITQEGQINKLKGEVQKMHDDWKMHEQMLAASATNMKSQYENLAYDATSKISERDGAI 1166

Query: 412  GIDIISF--NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
                        + E+ +RA            E+   SL  +   T    Y  L+     
Sbjct: 1167 NELKKEKLSFSQMVEESNRAVHQLKLDEMIGREERLNSLLSEGNET----YGALQNEMES 1222

Query: 470  KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-----IVEEAVSGQKVEVVFDQ------- 517
             + +     +   +        + ++    E     ++E   S +++    D        
Sbjct: 1223 LKSQYERRLRTCDETKRENEGTIHSLEVDIENMRARLLESEKSTERLRADVDNKGNLEKI 1282

Query: 518  TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
             PF      ++          I  +    + K          ++  +   + +L      
Sbjct: 1283 NPFKFPTSSKITFLTNYKDREIIRERQQHKLKDAEANEKIGGLQHDLKIQQKTLQAVTMD 1342

Query: 578  QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
               +    +      +      + G     N      +    D + S      E+   + 
Sbjct: 1343 LESQAAEESARLEKQIDILKLEVQGKDSELNKVRHEKERDILDQSASDLQGELEVVVAQL 1402

Query: 638  NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +       +L V  R     D   +   + +     +R ++ S+  E      S      
Sbjct: 1403 DQTRQEKNSLTVRLREQEVIDDELNSNLSEVQQMKQEREKLKSIVNEKSKDIDSLTIQLQ 1462

Query: 698  HVS-STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
                   ++           +    RIE    +  +     +DE +  +           
Sbjct: 1463 RSDKRVEQVESEMKQKSEESKEAAERIE-DARKMIQDLRREKDELVSMIGQRSSDQNLKF 1521

Query: 757  VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM---SHIISEVDSKELKSVM 813
              ++E++ EE R LQ      + +  +E  +  + +++  +        E+  ++LK  +
Sbjct: 1522 TQKIEKLREENRDLQKKLDDVRKESRLEAKTLSEASNIKQVLREKQHYQELS-EDLKVDI 1580

Query: 814  DALQKKIQS 822
              L+ ++  
Sbjct: 1581 QKLKNQMNE 1589


>gi|332018820|gb|EGI59379.1| hypothetical protein G5I_12477 [Acromyrmex echinatior]
          Length = 279

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVV--------GRVEEIWEEYRKLQLIHAKRK 778
             + A++ L    + +  +   LK  +  +V         R++ I + + +L     K+K
Sbjct: 88  AKENAKNDLQEGKKNINQVLEKLKNVEKEIVTNYQYALNDRIQNIKDTFGELNKEELKQK 147

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVD------SKELKSVMDALQKKIQSGI 824
           LQ N+ + S   + + + +      VD       KELK+++D    K++  I
Sbjct: 148 LQDNLTNSSKEIMDNADEVKKFEENVDEILEKSDKELKNILDKSFDKLKEAI 199


>gi|212691330|ref|ZP_03299458.1| hypothetical protein BACDOR_00822 [Bacteroides dorei DSM 17855]
 gi|237712222|ref|ZP_04542703.1| alanyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237726368|ref|ZP_04556849.1| alanyl-tRNA synthetase [Bacteroides sp. D4]
 gi|212666083|gb|EEB26655.1| hypothetical protein BACDOR_00822 [Bacteroides dorei DSM 17855]
 gi|229434894|gb|EEO44971.1| alanyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229453543|gb|EEO59264.1| alanyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
          Length = 152

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             +++  N+++    H+  H+++  +  + G   + + + I     + D          +
Sbjct: 3   QPSLNDHNKQEYPPMHTTEHVINRTMVNLFGCGRAIS-AHIERKKSKLDFALQTCPEETD 61

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  IE+ VN+++ +NLPV    +++E+AI       L  K ++ VR+V V   D      
Sbjct: 62  ITRIENTVNEVLRRNLPVTMEFISQEEAIGRFDMKRLPEKASETVRIVKVGDYDE----- 116

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            LC G HV +T EI    I+S    + GI R+  
Sbjct: 117 CLCIGQHVKNTSEIGTFKIIS-YDYKDGIFRMRF 149


>gi|213983237|ref|NP_001135512.1| alanyl-tRNA synthetase domain containing 1 [Xenopus (Silurana)
           tropicalis]
 gi|195539817|gb|AAI67931.1| Unknown (protein for MGC:135777) [Xenopus (Silurana) tropicalis]
          Length = 231

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 19/213 (8%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +  + E  +  VSG    ++   T  + E GGQ  D G      +             + 
Sbjct: 26  LKVENEGKKSTVSG--FNILLKDTVLFPEGGGQPDDRGFIHEVPVLRVTRQGPDAVHFV- 82

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                           +++ +D+  R      HS  HL+     ++ G   +        
Sbjct: 83  -------PSPFEPGAGVLVKVDWNRRFDHMQQHSGQHLVTAFADSLYGFKTTSWELGRQR 135

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYN 673
             +  D      +T  + ++IE  VN  I +++PV  R I           +  L   + 
Sbjct: 136 SVIELDTPL---VTVQQAEAIEKTVNQKIREHVPVNVRLITVDNPEFNKVRSHGLPDDHA 192

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             VR++ +E  D       +C GTHV +  ++ 
Sbjct: 193 GPVRIIDIEGVDAN-----MCCGTHVRNLSDLQ 220


>gi|317130675|ref|YP_004096957.1| LPXTG-motif cell wall anchor domain protein [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475623|gb|ADU32226.1| LPXTG-motif cell wall anchor domain protein [Bacillus
           cellulosilyticus DSM 2522]
          Length = 1622

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 30/191 (15%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----QLIHAKRKLQLN 782
            G  A   +    E  K +    K++       +E   EE   L    +     ++L+  
Sbjct: 656 AGGDATDEIYEALEAAKEVLEAAKLADPANKEAIEAATEEVTDLTTVLEKAIDAKELENA 715

Query: 783 --VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
               + +  +               S +L   ++A ++ ++    +L+    EK A  + 
Sbjct: 716 KFAGEKALEEAEKAQDRYENAGGETSDDLYEAVEAAKEALKE---VLLADPAEKDA--IE 770

Query: 841 VVTEDLLDRFN----AVDLARLSAKVLGGGGGGG-----RPHMAQ-----SGGPNGNKAD 886
             TE L+D       AV+     AK L      G     +   AQ     +GG   ++  
Sbjct: 771 AATEALIDETKKLEEAVE-----AKELANAKAAGEEALEKTEKAQDRYYNAGGEESDELY 825

Query: 887 QAIAGVASFLK 897
           +A+      L 
Sbjct: 826 EAVEAAKEVLN 836



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--LNVE 784
           T       +    E LK +       +  +    E + +E +KL+     ++L       
Sbjct: 740 TSDDLYEAVEAAKEALKEVLLADPAEKDAIEAATEALIDETKKLEEAVEAKELANAKAAG 799

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           + +  K        +     +S EL   ++A ++ + +    L     EK+A  +   TE
Sbjct: 800 EEALEKTEKAQDRYYNAGGEESDELYEAVEAAKEVLNNA---LQATPAEKEA--IEAATE 854

Query: 845 DLLD-------------RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            L D               NA      + +         +     +GG   ++  + +  
Sbjct: 855 ALNDATKKLEEAAEAKELANAKAAGEEALQEATKA----KDRYYNAGGEESDELYEVVEA 910

Query: 892 VASFLK 897
               L 
Sbjct: 911 AKEVLN 916


>gi|47155081|emb|CAG27299.1| putative alanyl tRNA synthetase [Candida metapsilosis]
          Length = 140

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 55/127 (43%), Gaps = 13/127 (10%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVE----------EIWEEYRKLQLIHAKRKLQLNVEDL 786
            ++ K+K L   LK    +V+ + +           I +  + +Q   +K+ L    + L
Sbjct: 16  AKESKVKELGVALKKLSISVLDKQKLTEKFNKVDKSIKDHQKSIQKEESKKTLDXVKKWL 75

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
                ++   ++H+    ++K +    + ++K+ ++  + L+    + K +    V+++ 
Sbjct: 76  DXDNKSEF-LVAHVPINANAKAITEAFNLVKKQDKTKSLYLLTGQND-KVAHGCYVSDEA 133

Query: 847 LDR-FNA 852
           + +  +A
Sbjct: 134 IAKGVDA 140


>gi|288927618|ref|ZP_06421465.1| alpha-amylase family protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330452|gb|EFC69036.1| alpha-amylase family protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 681

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 7/151 (4%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
              N+ +    H+A HLL+  +  +     S N + +     +   T  +  +  + K I
Sbjct: 534 CTHNKDEFPPAHTAEHLLNQVMIRMFDCGRSTN-AHVERKKSKISYTLDRKPSRQDEKEI 592

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  +N++I ++LPV   +++R D       + +   Y+  VR+V +   D        C 
Sbjct: 593 ERRMNELIEEDLPVTYELVDRYDLPEGIDLSRVPDDYSSMVRIVRIGDFDA-----CPCI 647

Query: 696 GTHVSSTGEIMLLYIVSE-SSIRAGIRRIEA 725
           G HV STG+I    ++           R+  
Sbjct: 648 GKHVRSTGQIGKFVLLGTNWDETTRTFRVRF 678


>gi|260911675|ref|ZP_05918255.1| alpha-amylase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634223|gb|EEX52333.1| alpha-amylase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 716

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 7/151 (4%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
              N+ +    H+A HLL+  +  +     S N + +     +   T  +  +  + K I
Sbjct: 569 CTHNKDEFPPAHTAEHLLNQVMIRMFDCGRSTN-AHVERKKSKISYTLDRKPSRQDEKEI 627

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  +N++I ++LPV   +++R D         +   Y++ VR+V +   D     +  C 
Sbjct: 628 ERRMNELIEEDLPVTYELVDRYDLPEGIDLDRVPDDYSNVVRIVRIGDFD-----TCSCI 682

Query: 696 GTHVSSTGEIMLLYIVSE-SSIRAGIRRIEA 725
           G HV STG+I    ++           R+  
Sbjct: 683 GKHVRSTGQIGKFVMLGTNWDEPTRTFRVRF 713


>gi|150006475|ref|YP_001301219.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|294775423|ref|ZP_06740938.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides vulgatus PC510]
 gi|149934899|gb|ABR41597.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|294450743|gb|EFG19228.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides vulgatus PC510]
          Length = 152

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             +++  N+++    H+  H+++  +  + G   + + + I     + D         A+
Sbjct: 3   QPSLNDHNKQEYPPMHTTEHVINRTMVNLFGCGRAIS-AHIERKKSKLDFALQTCPEEAD 61

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  IE+ VN+++ +NLPV    +++E+AI       L  K ++ VR+V V   D      
Sbjct: 62  IIRIENTVNEVLRRNLPVTMEFISQEEAIGRFDMKRLPEKASETVRIVKVGDYDE----- 116

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            LC G HV +T EI    I+S    + GI R+  
Sbjct: 117 CLCIGQHVKNTSEIGTFKIISH-DYKDGIFRMRF 149


>gi|326502278|dbj|BAJ95202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 257

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 83/224 (37%), Gaps = 11/224 (4%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G +  VV D T F+ + GGQ  DTG  +     L      K              G  
Sbjct: 37  EEGGRRAVVLDATIFHPQGGGQPADTGVIVSAARFLVEDVRVKDGVVFHYGRFEDADGEE 96

Query: 566 -RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                S+ + ID   R+  S  HSA HLL   ++ +   H+        PDG   +    
Sbjct: 97  LSQGQSVSMEIDADRRKLNSRLHSAGHLLDSCMTNLGL-HMEPGKGYHFPDGPFVEYKGV 155

Query: 625 KPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681
            P    +     +E   N++I++   V+  +   E+A    G A       +   R+V  
Sbjct: 156 VPTDQLQDTKIQLEKEANELISKGAKVLVSVFPYEEAAKLCGGALPSYISEDSTPRIVKF 215

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
               G       CGGTHV+   +I  L + +   ++ G+ ++  
Sbjct: 216 GDCPG-----CPCGGTHVADITDIGNLKVTNI-RVKKGVTKVSY 253


>gi|326491881|dbj|BAJ98165.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 251

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 83/224 (37%), Gaps = 11/224 (4%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G +  VV D T F+ + GGQ  DTG  +     L      K              G  
Sbjct: 31  EEGGRRAVVLDATIFHPQGGGQPADTGVIVSAARFLVEDVRVKDGVVFHYGRFEDADGEE 90

Query: 566 -RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                S+ + ID   R+  S  HSA HLL   ++ +   H+        PDG   +    
Sbjct: 91  LSQGQSVSMEIDADRRKLNSRLHSAGHLLDSCMTNLGL-HMEPGKGYHFPDGPFVEYKGV 149

Query: 625 KPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681
            P    +     +E   N++I++   V+  +   E+A    G A       +   R+V  
Sbjct: 150 VPTDQLQDTKIQLEKEANELISKGAKVLVSVFPYEEAAKLCGGALPSYISEDSTPRIVKF 209

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
               G       CGGTHV+   +I  L + +   ++ G+ ++  
Sbjct: 210 GDCPG-----CPCGGTHVADITDIGNLKVTNI-RVKKGVTKVSY 247


>gi|47155079|emb|CAG27298.1| putative alanyl tRNA synthetase [Candida orthopsilosis]
          Length = 141

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 53/126 (42%), Gaps = 12/126 (9%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVE----------EIWEEYRKLQLIHAKRKLQLNVEDLS 787
           ++ K+K L   LK    +V+ + +           I +  + +Q   +K+ L +  + L 
Sbjct: 17  KENKVKELGVSLKKLSISVLDKQKLTEKFNKVDKSIKDHQKSIQKEESKKTLDVVKKWLD 76

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                    ++HI    ++K +    + ++K+ ++  + L+    + K +    V+++ +
Sbjct: 77  DGDNKSEFLVAHIPINANAKAITEAFNLVKKQDKTKSLYLLTGQND-KVAHGCYVSDEAI 135

Query: 848 -DRFNA 852
               +A
Sbjct: 136 GKGVDA 141


>gi|123438677|ref|XP_001310118.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121891874|gb|EAX97188.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 3977

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCH 789
               L    +++K     L     ++  ++EE+ EE  K   +     ++LQ  ++ L+  
Sbjct: 926  LEELQTSIDQMKQTNENLNKENKDLQNKIEELLEENDKANNENESKNKELQQIIDQLAEE 985

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            K++  N      SE ++K+ + ++D L  + +     L   + E+K  +
Sbjct: 986  KLSLQN--KFEESEKNAKDNQKIIDELIAENEK----LTSSNNEEKVEL 1028



 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 40/87 (45%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  + + L+ +   L   + +++ ++EE+     +++  +     +         ++ 
Sbjct: 899 DELQSKVDLLEKILDQLNKDKSDLITKLEELQTSIDQMKQTNENLNKENKDLQNKIEELL 958

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKK 819
           + N  ++  +E  +KEL+ ++D L ++
Sbjct: 959 EENDKANNENESKNKELQQIIDQLAEE 985



 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCH 789
              L  Q++ L S ++ +     ++  +++++ +E  +L+  +   K  L+    DL   
Sbjct: 407 IDELQNQNKDLISASNDMNTKNQSLQTKIDQLNKEKTELEEKNKVLKSNLEGLKSDLLSK 466

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
                           ++ L+ ++D LQ + +
Sbjct: 467 NQESTK---------KNENLQKIIDQLQNENK 489


>gi|255078740|ref|XP_002502950.1| predicted protein [Micromonas sp. RCC299]
 gi|226518216|gb|ACO64208.1| predicted protein [Micromonas sp. RCC299]
          Length = 346

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 95/277 (34%), Gaps = 16/277 (5%)

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ--KVEVVFDQ 517
           Y   R             +   +  ++   +  +A V   E VE+       +  VV D+
Sbjct: 66  YTASRTLISPARAAMTSPKTELVYFSDTYQTSCEAKVVSCEPVEDPGDDGVARFVVVLDR 125

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER----GILRTEMSLVL 573
           T  Y   GGQ  DTG  +G G    +       +   V H              +  +++
Sbjct: 126 TVAYPAGGGQPSDTGRIVGPGGVAFVVASVASTKDGTVTHLGEFEEEGAAPFNADDEVIV 185

Query: 574 TIDYQNRRQLSINHSATHLLH-HALSTILGSHVSQNG-SCITPDGLRFDVTHS--KPITS 629
           T+D   R   +  HSA HLL     +   G  V         PD    + T         
Sbjct: 186 TVDADKRLLHARIHSAGHLLDVAMTNIGFGPDVMVPAKGLHQPDQAYVEYTGKVEGLDKD 245

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +  ++  +N +++        +M  ++A    G         +   R+V++  +  G 
Sbjct: 246 KLMADLKAEMNKLVSLGGGSAAAMMGYDEAAEACGGELPSYIPKDSTPRIVTIVPDTAG- 304

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                CGGTHV++  EI  + +     ++ G  R+  
Sbjct: 305 ---CPCGGTHVANVKEIGSVDVTGV-RVKKGTTRVSY 337


>gi|254881607|ref|ZP_05254317.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|319642992|ref|ZP_07997626.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|254834400|gb|EET14709.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|317385357|gb|EFV66302.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 152

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             +++  N+++    H+  H+++  +  + G   + + + I     + D         A+
Sbjct: 3   QPSLNDHNKQEYPPMHTTEHVINRTMVNLFGCGRAIS-AHIERKKSKLDFALQTCPEEAD 61

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  IE+ VN+++ +NLPV    +++E+AI       L  K ++ VR+V V   D      
Sbjct: 62  IIRIENTVNEVLRRNLPVTMEFISQEEAIGRFDMKRLPEKASETVRIVKVGDYDE----- 116

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            LC G HV +T EI    I+S    + GI R+  
Sbjct: 117 CLCIGQHVENTSEIGTFKIISH-DYKDGIFRMRF 149


>gi|317155876|ref|XP_001825428.2| alanyl-tRNA synthetase [Aspergillus oryzae RIB40]
          Length = 299

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 17/243 (6%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQ 547
           +  + +  + + + V+ +   +   +T FY + GGQ  DTG        +G   ++  V+
Sbjct: 59  ISQLTENEKSLAKTVAPESFALTTRETVFYPQGGGQPSDTGVITLADKSNGSTFKVLLVR 118

Query: 548 KKAEGIFVHHAIVERGILRT-EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           K  +G  +H          T    +   ID+  R   S  H+A H++  A+  +      
Sbjct: 119 KTLDGTVLHLGEFTDQPCFTDGQLVSQAIDWAKRDYHSRLHTAGHIIGLAMRLLAPVLGE 178

Query: 607 QNGSCITPDGLRFD-VTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           +    +  +          + +   E KS IED VN+++   LPV T   + +    +  
Sbjct: 179 RK--KVKANHAPGQACMEFEGLLYTEHKSVIEDKVNELVGMKLPVTTEWWDEDRIQNADL 236

Query: 665 AALLGTK--YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             + G +   N + R+  +   D        CGGTHV  TG +     + + + + G+ +
Sbjct: 237 NMVEGLQLGKNGQARIAMIGDIDAN-----PCGGTHVEHTG-LTGFITIRKIARQKGVSK 290

Query: 723 IEA 725
           +  
Sbjct: 291 LSY 293


>gi|83774170|dbj|BAE64295.1| unnamed protein product [Aspergillus oryzae]
          Length = 270

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 17/243 (6%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQ 547
           +  + +  + + + V+ +   +   +T FY + GGQ  DTG        +G   ++  V+
Sbjct: 30  ISQLTENEKSLAKTVAPESFALTTRETVFYPQGGGQPSDTGVITLADKSNGSTFKVLLVR 89

Query: 548 KKAEGIFVHHAIVERGILRT-EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           K  +G  +H          T    +   ID+  R   S  H+A H++  A+  +      
Sbjct: 90  KTLDGTVLHLGEFTDQPCFTDGQLVSQAIDWAKRDYHSRLHTAGHIIGLAMRLLAPVLGE 149

Query: 607 QNGSCITPDGLRFD-VTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           +    +  +          + +   E KS IED VN+++   LPV T   + +    +  
Sbjct: 150 RK--KVKANHAPGQACMEFEGLLYTEHKSVIEDKVNELVGMKLPVTTEWWDEDRIQNADL 207

Query: 665 AALLGTK--YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             + G +   N + R+  +   D        CGGTHV  TG +     + + + + G+ +
Sbjct: 208 NMVEGLQLGKNGQARIAMIGDIDAN-----PCGGTHVEHTG-LTGFITIRKIARQKGVSK 261

Query: 723 IEA 725
           +  
Sbjct: 262 LSY 264


>gi|317486706|ref|ZP_07945523.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316922089|gb|EFV43358.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 150

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 8/152 (5%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+A H+L+  +  + G   S +      D  + D    +P+  AE   +E  +N+++AQ
Sbjct: 1   MHTAEHVLNQTMVRMFGCGRSFSSHLN-ADKSKCDYHFPRPLEDAEASELERRINEVLAQ 59

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           ++PV T ++ RE+A        L         ++ V     G +    C G HV +T E+
Sbjct: 60  HMPVRTEMLPREEAGKLVDLGRLPAHLEGEEELM-VRIVTVGDYDICPCIGEHVENTSEV 118

Query: 706 MLLYIVSESSI------RAGIRRIEAITGQRA 731
               +VS           AG  RI     + A
Sbjct: 119 GAFRLVSHDFTPPQGDEEAGRLRIRFKLKKNA 150


>gi|153836195|ref|ZP_01988862.1| metal-dependent hydrolase [Vibrio parahaemolyticus AQ3810]
 gi|149750470|gb|EDM61215.1| metal-dependent hydrolase [Vibrio parahaemolyticus AQ3810]
          Length = 213

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 73/225 (32%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+          EV    T FYAE+GGQ  D G   G  +   I    +    +      
Sbjct: 14  ELTSTVTRISDNEVELSHTIFYAESGGQESDAGTIDGIPVVGAIKSGSRIVYTL------ 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
             +   R    ++  ID+Q R  L   H A  ++    +     ++ + G+ I+ D  R 
Sbjct: 68  ERQPTFRVGDQVITQIDWQRRYALMKLHFAAEVILELFTQKFA-NIQKVGAHISADKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D    + IT      +           +     I +                     R  
Sbjct: 127 DFEWPESITP-----LLAEFQQQAQAVIDSDAEIESAFSDEGQER------------RYW 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            VE       +   CGGTH+  T E+  + +    ++  G  R+E
Sbjct: 170 KVEGF-----AQVPCGGTHLKRTSEVGRIALKR-KNVGKGKERVE 208


>gi|156387832|ref|XP_001634406.1| predicted protein [Nematostella vectensis]
 gi|156221489|gb|EDO42343.1| predicted protein [Nematostella vectensis]
          Length = 586

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 15/117 (12%)

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           +  +      A +RR+E          L GQ  +L+ +    K ++  +V R+ ++ EE 
Sbjct: 294 MQQMKNEQADADVRRME----------LEGQIRQLQQILRQQKEAEEELVARIGKLQEEK 343

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL-QKKIQSG 823
           R+LQ   AK +  +   +    ++      +H+  E D K L++ +D + ++K+++ 
Sbjct: 344 RELQERLAKFQRSVAAAEQEKRELE----RAHVRLEKDKKALRNTLDKIEREKLETD 396


>gi|317034806|ref|XP_001401215.2| kinesin family protein [Aspergillus niger CBS 513.88]
          Length = 1752

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 75/223 (33%), Gaps = 16/223 (7%)

Query: 604  HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             V Q  + I       D    + +   E         +  A+   +      R+ +   G
Sbjct: 1136 QVVQQENLINEMKESHDAREKQLLAEIEELKSLLKTQEEAAKAQDLCAEEQERKISSLEG 1195

Query: 664  AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                L +K+++ V  +    ++     + L           +  +  +      AG    
Sbjct: 1196 EVTELKSKHHNAVESLQSSEQELSATLAELDKA--------LASIDAMRSEQTAAG---- 1243

Query: 724  EAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            EA      A   L  + E+ + L + LK              E+   L+  H + +LQL+
Sbjct: 1244 EASASKDAAARELEAEREQQEELVAKLKHVIDEHKATNAAHLEKIASLEKSHGEAQLQLS 1303

Query: 783  -VEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQS 822
             +     +   +V      +SE+  +    KS+ D+ +K ++S
Sbjct: 1304 ELLAAKDNDSNEVQVHQSRVSELEKEIDSHKSLADSFKKDLES 1346


>gi|134081898|emb|CAK42153.1| unnamed protein product [Aspergillus niger]
          Length = 1750

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 75/223 (33%), Gaps = 16/223 (7%)

Query: 604  HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             V Q  + I       D    + +   E         +  A+   +      R+ +   G
Sbjct: 1136 QVVQQENLINEMKESHDAREKQLLAEIEELKSLLKTQEEAAKAQDLCAEEQERKISSLEG 1195

Query: 664  AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                L +K+++ V  +    ++     + L           +  +  +      AG    
Sbjct: 1196 EVTELKSKHHNAVESLQSSEQELSATLAELDKA--------LASIDAMRSEQTAAG---- 1243

Query: 724  EAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            EA      A   L  + E+ + L + LK              E+   L+  H + +LQL+
Sbjct: 1244 EASASKDAAARELEAEREQQEELVAKLKHVIDEHKATNAAHLEKIASLEKSHGEAQLQLS 1303

Query: 783  -VEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQS 822
             +     +   +V      +SE+  +    KS+ D+ +K ++S
Sbjct: 1304 ELLAAKDNDSNEVQVHQSRVSELEKEIDSHKSLADSFKKDLES 1346


>gi|89098678|ref|ZP_01171560.1| hypothetical protein B14911_00775 [Bacillus sp. NRRL B-14911]
 gi|89086640|gb|EAR65759.1| hypothetical protein B14911_00775 [Bacillus sp. NRRL B-14911]
          Length = 515

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 14/104 (13%)

Query: 733 SHLMGQDEKLKSLASFLKVSQ-----GNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVE 784
             +   +++L   A   K  +           + ++    E  ++L+  +   +LQ   E
Sbjct: 174 EIVESAEKQLNEKAEKEKNPETRKLIEETADEISKLDSSAEALKELEKKNKSLELQKMKE 233

Query: 785 DLSCHKIADVN------FMSHIISEVDSKELKSVMDALQKKIQS 822
                K+ +         +S + + +D+K+L   MD L++  ++
Sbjct: 234 QERQRKLEETKSRLDNAGLSSLAAALDNKDLNKAMDELKELQKN 277


>gi|284046279|ref|YP_003396619.1| threonyl/alanyl tRNA synthetase SAD [Conexibacter woesei DSM 14684]
 gi|283950500|gb|ADB53244.1| Threonyl/alanyl tRNA synthetase SAD [Conexibacter woesei DSM 14684]
          Length = 255

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 7/201 (3%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D G     G +L   D           H +           L   +D+  R +L 
Sbjct: 56  GTLRSDAGVWQVTGAKLARDDSDPAFPAAGAWHLLDGEAPA-AGTELEGELDWDRRYELM 114

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A H+L   +    G+ V+  G+ + P   R D      ++   ++ +E  VN  + 
Sbjct: 115 RTHTALHILCAVVWRDYGAKVT--GANMEPLRGRMDF-EFDALSGEFVRELEQKVNAEVD 171

Query: 645 QNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
              P     + R D            +     + VV V   +G        GGTHV++T 
Sbjct: 172 AARPTRVDFLPRADADRDPELIRNKVSLLPPSITVVRVVGIEGLD--LQADGGTHVANTR 229

Query: 704 EIMLLYIVSESSIRAGIRRIE 724
           E+  + + S  S     +R+E
Sbjct: 230 EVGRIALPSYKSKGKINKRVE 250


>gi|145533074|ref|XP_001452287.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419975|emb|CAK84890.1| unnamed protein product [Paramecium tetraurelia]
          Length = 444

 Score = 47.8 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           + L  Q  +L   A  L   + N++ R+ ++  E  +L      +  +   +  +   + 
Sbjct: 33  ADLKDQLGQLDKQAKQLAAERDNLLDRIAKLQAEIEQLGKQIQVKNDENAAQSKTVSTLE 92

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     E +++ LK ++D   K++  
Sbjct: 93  G-QVAQLKPLEAENQRLKQLIDQQTKELGD 121


>gi|46115228|ref|XP_383632.1| hypothetical protein FG03456.1 [Gibberella zeae PH-1]
          Length = 269

 Score = 47.4 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 15/242 (6%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD---GIRLQITDVQKKAE 551
           +  +   + +  +     VV ++T F+ + GGQ  D G    +      +    +    +
Sbjct: 33  LEDENRELFKQGTDDDFAVVTEETIFHPQGGGQPSDIGTMTNESDTRFTVASARMDAVRD 92

Query: 552 GIFVHHAIVERGILRT-EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           G  +H    E     T   ++   ID + R   S  H+A H+L  A++ +L   V     
Sbjct: 93  GQVLHFGKFESDKKFTEGDTVTTEIDVEKRLLYSRYHTAGHVLGSAVNHLLKDKVEGFEE 152

Query: 611 CITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
                         + +   + K  I+  V++ IA  +PV     + ED   +G   L  
Sbjct: 153 LKASHFPDSASCEFQGLIEGKWKDPIQAKVDEFIAAKMPVEIEFWDEEDFRKNGLEHLTP 212

Query: 670 TK----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                   ++ RVV +   +        CGGTH+ +T +     +   S    G  ++  
Sbjct: 213 DASFVAPGEKFRVVRIVGAEVY-----PCGGTHIDTTDQCGETTVKKISR-SKGKSKVSY 266

Query: 726 IT 727
           + 
Sbjct: 267 LV 268


>gi|120601271|ref|YP_965671.1| threonyl/alanyl tRNA synthetase, SAD [Desulfovibrio vulgaris DP4]
 gi|120561500|gb|ABM27244.1| Threonyl/alanyl tRNA synthetase, SAD [Desulfovibrio vulgaris DP4]
          Length = 218

 Score = 47.4 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 78/231 (33%), Gaps = 28/231 (12%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           + + E V   V      +  D+T  +A +GGQ  D G   G  I   +         ++ 
Sbjct: 13  LTETEAVVTGVEND--VITLDRTVAFAFSGGQESDRGTIAGHAILKAVKGSPCDPLELYY 70

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
                  G+       V       RR + ++ +A  +L          H  + G+ I+PD
Sbjct: 71  TL-PAGHGLTPGSRVSVCIDGEARRRLVRLHFAAELVLELVNR--HYDHPEKTGAHISPD 127

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             R D      I++A     E     + A                            +  
Sbjct: 128 KARLDFAWQGNISTAFPMLHERLSALVAADLP-----------------IESSFEDESTE 170

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           VR  S+E       +   CGGTH +STG +  + +  E +  +G  RIE +
Sbjct: 171 VRYWSIEGF-----ARVRCGGTHPASTGAVGRIRLRRE-NPGSGRERIEIL 215


>gi|304439702|ref|ZP_07399602.1| glutamine-fructose-6-phosphate transaminase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371808|gb|EFM25414.1| glutamine-fructose-6-phosphate transaminase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 634

 Score = 47.4 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 59/524 (11%), Positives = 151/524 (28%), Gaps = 55/524 (10%)

Query: 367 VLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD-ILCARGLAGIDIISFNQALEEQ 425
            +L+  + +     +    +    + THG+P D      +   G+  +      +   + 
Sbjct: 77  NVLENEIKNRNLKYVPTTGIGHTRWATHGVPTDENAHPHVSMDGVISVVHNGIIENYMDL 136

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           +           S T  ++   +  KY       Y+       +K  + +        L+
Sbjct: 137 KEELLNDGYKFKSDTDTEVVAGIIAKY-------YENNLLDTVLKVRKMLEGSYAIGILS 189

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF--YAEAGGQLGDTGCAIGDGIRLQI 543
           N     + A+     ++        + V  D T    Y +    L        +    +I
Sbjct: 190 NHDPDTLIAMRHDAPLIAGLTE-DGIIVASDITSIIEYTKKVIFLESGDLVYSNKKEYKI 248

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS--------ATHLLHH 595
            D   K     V            E      I   N +   I  +          +L + 
Sbjct: 249 FDKNDKEVEREVKIIDWNYEKATKEGYDHFMIKEINEQPRVIKEAISLRVKDGFINLENG 308

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR--- 652
                +    +             +V        A+     +  ++   QN  +      
Sbjct: 309 FTKEEIEKFSTIYVVACGTAHHAGEVGKFAIEKFAKRPVYAEIASEFRYQNPFIDENSLL 368

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           I+  +    +   A +        +V+S+    G           +  +  E+ +    +
Sbjct: 369 IVVSQSGETADTLAAIKEAKKRGAKVLSITNVVGSSIDRESDKTIYCYAGPEVSVASTKA 428

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG------RVEEIWEE 766
            ++    +  +  +    A       +E+++ +   LK+    ++        ++EI +E
Sbjct: 429 YTTQ---LVALYFLALDFAYKTGKMTEEEVREVIKNLKLVPEQIIEILKDHSTIDEIAKE 485

Query: 767 YRKLQLIHAKRK-LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            +  +      + +          K+ +V ++   +    + ELK            G +
Sbjct: 486 IKDAESSFYIGRGIDYLSAKEGALKLKEVTYI--HVEAFPAGELKH-----------GSL 532

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
            L+   +++  +  I   ++LL +  +    +  +       GG
Sbjct: 533 ALI---EDRTPAFAIAGNKELLPKTQSN--IKEISA-----RGG 566


>gi|28898540|ref|NP_798145.1| putative alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365020|ref|ZP_05777591.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus K5030]
 gi|260879585|ref|ZP_05891940.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           AN-5034]
 gi|260894940|ref|ZP_05903436.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           Peru-466]
 gi|260901050|ref|ZP_05909445.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           AQ4037]
 gi|28806758|dbj|BAC60029.1| putative alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085987|gb|EFO35682.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           Peru-466]
 gi|308093222|gb|EFO42917.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           AN-5034]
 gi|308110720|gb|EFO48260.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           AQ4037]
 gi|308111714|gb|EFO49254.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus K5030]
          Length = 213

 Score = 47.4 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 73/225 (32%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+          EV    T FYAE+GGQ  D G   G  +   I    +    +      
Sbjct: 14  ELTSTVTRISDKEVELSHTIFYAESGGQESDAGTIDGIRVVGAIKSGSRIVYTL------ 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
             +   R    ++  ID+Q R  L   H A  ++    +     ++ + G+ I+ D  R 
Sbjct: 68  ERQPTFRVGDQVITQIDWQRRYALMKLHFAAEVILELFTQKFA-NIQKVGAHISADKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D    + IT      +           +     I +                     R  
Sbjct: 127 DFEWPESITP-----LLAEFQQRAQAVIDSDAEIESAFSDEGQER------------RYW 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            VE       +   CGGTH+  T E+  + +    ++  G  R+E
Sbjct: 170 KVEGF-----AQVPCGGTHLKRTSEVGRIALKR-KNVGKGKERVE 208


>gi|229817247|ref|ZP_04447529.1| hypothetical protein BIFANG_02507 [Bifidobacterium angulatum DSM
           20098]
 gi|229785036|gb|EEP21150.1| hypothetical protein BIFANG_02507 [Bifidobacterium angulatum DSM
           20098]
          Length = 498

 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 22/142 (15%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ--------- 753
           G+   L    + +    + R+ A    RA   L   ++  ++L+     S          
Sbjct: 86  GDYAWLANSLDVASHRYLYRLTARA-HRAIEALSHLEDTTQALSGAQANSIIMEIEHARM 144

Query: 754 ---GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKEL 809
               +   R+E +  E  + Q    + +    VE LS  ++ D +N + + +  V   +L
Sbjct: 145 QLTADPHKRIELLNREIEERQKEIEQLEQDGAVEQLSSKQVEDIINVVHNTLRGVPI-DL 203

Query: 810 KSVM-------DALQKKIQSGI 824
           + +        DAL++++Q+G 
Sbjct: 204 RELALAERDNGDALRRRMQAGA 225


>gi|306822768|ref|ZP_07456146.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309800902|ref|ZP_07695034.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
 gi|304554313|gb|EFM42222.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308222438|gb|EFO78718.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
          Length = 510

 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 22/125 (17%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ------------GNVVGRVEEIWEEY 767
           + R+ A    RA   L   ++  ++L+     S              +   R++ + ++ 
Sbjct: 116 LYRLTARA-HRAIEALHRLEDTTQALSGAQANSIIMEIEHARMQLTADPRERIKLLRKDI 174

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVM-------DALQKK 819
            + Q    + +    +E L+  ++ D +N + + +  V   +L+ +        DAL+++
Sbjct: 175 EERQKEIDELERNETIERLTSEQVGDIINVIHNTLRGVPI-DLRELALAERDNGDALRRR 233

Query: 820 IQSGI 824
           +QSG 
Sbjct: 234 MQSGA 238


>gi|283456019|ref|YP_003360583.1| hypothetical protein BDP_1128 [Bifidobacterium dentium Bd1]
 gi|283102653|gb|ADB09759.1| Conserved hypothetical protein [Bifidobacterium dentium Bd1]
          Length = 497

 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 22/125 (17%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ------------GNVVGRVEEIWEEY 767
           + R+ A    RA   L   ++  ++L+     S              +   R++ + ++ 
Sbjct: 103 LYRLTARA-HRAIEALHRLEDTTQALSGAQANSIIMEIEHARMQLTADPRERIKLLRKDI 161

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVM-------DALQKK 819
            + Q    + +    +E L+  ++ D +N + + +  V   +L+ +        DAL+++
Sbjct: 162 EERQKEIDELERNETIERLTSEQVGDIINVIHNTLRGVPI-DLRELALAERDNGDALRRR 220

Query: 820 IQSGI 824
           +QSG 
Sbjct: 221 MQSGA 225


>gi|171742959|ref|ZP_02918766.1| hypothetical protein BIFDEN_02081 [Bifidobacterium dentium ATCC
           27678]
 gi|171278573|gb|EDT46234.1| hypothetical protein BIFDEN_02081 [Bifidobacterium dentium ATCC
           27678]
          Length = 510

 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 22/125 (17%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ------------GNVVGRVEEIWEEY 767
           + R+ A    RA   L   ++  ++L+     S              +   R++ + ++ 
Sbjct: 116 LYRLTARA-HRAIEALHRLEDTTQALSGAQANSIIMEIEHARMQLTADPRERIKLLRKDI 174

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVM-------DALQKK 819
            + Q    + +    +E L+  ++ D +N + + +  V   +L+ +        DAL+++
Sbjct: 175 EERQKEIDELERNETIERLTSEQVGDIINVIHNTLRGVPI-DLRELALAERDNGDALRRR 233

Query: 820 IQSGI 824
           +QSG 
Sbjct: 234 MQSGA 238


>gi|70981913|ref|XP_746485.1| vesicle-mediated transport protein (Imh1) [Aspergillus fumigatus
           Af293]
 gi|66844108|gb|EAL84447.1| vesicle-mediated transport protein (Imh1), putative [Aspergillus
           fumigatus Af293]
          Length = 1001

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 729 QRARSHLMGQDEKLKSL---ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
              ++ L   +  +      A  LK         +E++ ++  + +    +++LQ  +E+
Sbjct: 196 DDVKAKLAESENTIAKAGEEAEKLKAELKQKTEEIEKLQDQVTQQKDNDQQKELQEKLEE 255

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           ++  K A    +           L+ ++D L+ +++   +++  +  + K  V
Sbjct: 256 VAKEKDASEKKLGV---------LQGLVDNLRSQLKDTEVVVSDLKADMKGKV 299


>gi|159122290|gb|EDP47412.1| vesicle-mediated transport protein (Imh1), putative [Aspergillus
           fumigatus A1163]
          Length = 1001

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 729 QRARSHLMGQDEKLKSL---ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
              ++ L   +  +      A  LK         +E++ ++  + +    +++LQ  +E+
Sbjct: 196 DDVKAKLAESENTIAKAGEEAEKLKAELKQKTEEIEKLQDQVTQQKDNDQQKELQEKLEE 255

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           ++  K A    +           L+ ++D L+ +++   +++  +  + K  V
Sbjct: 256 VAKEKDASEKKLGV---------LQGLVDNLRSQLKDTEVVVSDLKADMKGKV 299


>gi|238498766|ref|XP_002380618.1| alanyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
 gi|220693892|gb|EED50237.1| alanyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
          Length = 267

 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 17/243 (6%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC----AIGDGIRLQITDVQ 547
           +  + +  + + + V+ +   +   +T FY + GGQ  DTG        +G   ++  V+
Sbjct: 27  ISQLTESEKSLAKTVAPESFALATRETVFYPQGGGQPSDTGVITLADTSNGSTFKVLLVR 86

Query: 548 KKAEGIFVHHAIVERGILRT-EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           K  +G  +H          T    +   ID+  R   S  H+A H++  A+  +      
Sbjct: 87  KTLDGTVLHLGEFTDQPCFTDGQLVSQAIDWAKRDYHSRLHTAGHIIGLAMRLLAPVLGE 146

Query: 607 QNGSCITPDGLRFD-VTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           +    +  +          + +   E KS IED VN+++   LPV T   + +    +  
Sbjct: 147 RK--KVKANHAPGQACMEFEGLLYTEHKSVIEDKVNELVGMKLPVTTEWWDEDRIHNADL 204

Query: 665 AALLGTK--YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             + G +   N + R+  +   D        CGGTHV  TG +     + + + + G+ +
Sbjct: 205 NMVEGLQLGKNGQARIAMIGDIDAN-----PCGGTHVEHTG-LTGFITIRKIARQKGVSK 258

Query: 723 IEA 725
           +  
Sbjct: 259 LSY 261


>gi|291334612|gb|ADD94261.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C231]
          Length = 335

 Score = 46.7 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 725 AITGQRARSHLMGQDEKLKSL------ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           A TG+     L  Q    + L       + ++  + N+  R+ ++  E +K++L     K
Sbjct: 31  AETGEGIVRRLRKQIAAYEELDPFARKMAVIEAERENIQERINKVKSEEKKIELELMADK 90

Query: 779 LQLNVEDLSCHKIAD--VNFMSHIISEVDSKE--LKSVMDALQKKI 820
           L+         KI D  +N        ++++   L + +D+   ++
Sbjct: 91  LESLKIKKEEQKIDDQIINLQLKKEDSINAENEKLSNTIDSYSDQL 136


>gi|265751926|ref|ZP_06087719.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|263236718|gb|EEZ22188.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 157

 Score = 46.7 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 7/161 (4%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           + T + +           ++  H+  H+++  +  + G   + + + I     + D    
Sbjct: 1   METNIEINKPSPKFQDVSIAPMHTTEHVINRTMVNLFGCGRAIS-AHIERKKSKLDFALQ 59

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
                 ++  IE+ VN+++ +NLPV    +++E+AI       L  K ++ VR+V V   
Sbjct: 60  TCPEETDITRIENTVNEVLRRNLPVTMEFISQEEAIGRFDMKRLPEKASETVRIVKVGDY 119

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           D       LC G HV +T EI    I+S    + GI R+  
Sbjct: 120 DE-----CLCIGQHVKNTSEIGTFKIIS-YDYKDGIFRMRF 154


>gi|104783632|ref|YP_610130.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Pseudomonas
           entomophila L48]
 gi|95112619|emb|CAK17347.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Pseudomonas
           entomophila L48]
          Length = 854

 Score = 46.7 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 8/198 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VEEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  +  LK  +      R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLDRRLIQLKVESQALKKEEDEAAKKRLEKLTEEIDRLE 452

Query: 772 LIHAKRKLQLNVEDLSCH 789
             +A  +     E     
Sbjct: 453 REYADLEEIWASEKAEVQ 470


>gi|145475325|ref|XP_001423685.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124390746|emb|CAK56287.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1328

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            + L  Q  +L   A  L   + N++ R+ ++  E  +L      +  +   +  +   + 
Sbjct: 917  ADLKDQLGQLDKQARQLAAERDNLLDRIAKLQAEIEQLGKQIQVKNDENAAQSKTVSTLE 976

Query: 793  DVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                      E +++ LK ++D   K++  
Sbjct: 977  G-QVAQLKPLEAENQRLKQLIDQQTKELGD 1005


>gi|26987361|ref|NP_742786.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Pseudomonas
           putida KT2440]
 gi|54035836|sp|Q88Q71|CLPB_PSEPK RecName: Full=Chaperone protein ClpB
 gi|24982014|gb|AAN66250.1|AE016253_5 ATP-dependent Clp protease, ATP-binding subunit ClpB [Pseudomonas
           putida KT2440]
          Length = 854

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 8/198 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VEEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  +  LK  +      R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLDRRLIQLKVESQALKKEEDEAAKKRLEKLTEEIERLE 452

Query: 772 LIHAKRKLQLNVEDLSCH 789
             ++  +     E     
Sbjct: 453 REYSDLEEIWASEKAEVQ 470


>gi|330432832|gb|AEC17891.1| periplasmic chaperone [Gallibacterium anatis UMN179]
          Length = 175

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 11/123 (8%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           I  I       H   ++  LK L +  K     +  + + I ++ +KLQ      +    
Sbjct: 30  IVFINSAYIFQHAPEREAALKKLDAEFKTPVEELQKKEKVIVDKIQKLQKDAKNLRQADI 89

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII-----MLVGISKEKKAS 837
            +     +I  +        + ++ EL+  ++A + +  + ++     ++  I+KEKK S
Sbjct: 90  KKRE--DEINKLRVDY----DKEANELQQKINARRAEEDNKVVESIQKVINDIAKEKKYS 143

Query: 838 VLI 840
            +I
Sbjct: 144 FVI 146


>gi|325273285|ref|ZP_08139562.1| ATP-dependent chaperone ClpB [Pseudomonas sp. TJI-51]
 gi|324101570|gb|EGB99139.1| ATP-dependent chaperone ClpB [Pseudomonas sp. TJI-51]
          Length = 854

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 8/198 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VEEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  +  LK  +      R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLDRRLIQLKVESQALKKEEDEAAKKRLEKLTEEIERLE 452

Query: 772 LIHAKRKLQLNVEDLSCH 789
             ++  +     E     
Sbjct: 453 REYSDLEEIWASEKAEVQ 470


>gi|167031687|ref|YP_001666918.1| ATP-dependent chaperone ClpB [Pseudomonas putida GB-1]
 gi|166858175|gb|ABY96582.1| ATP-dependent chaperone ClpB [Pseudomonas putida GB-1]
          Length = 854

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 8/198 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VEEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  +  LK  +      R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLDRRLIQLKVESQALKKEEDEAAKKRLEKLTEEIERLE 452

Query: 772 LIHAKRKLQLNVEDLSCH 789
             ++  +     E     
Sbjct: 453 REYSDLEEIWASEKAEVQ 470


>gi|148545915|ref|YP_001266017.1| ATPase [Pseudomonas putida F1]
 gi|148509973|gb|ABQ76833.1| ATPase AAA-2 domain protein [Pseudomonas putida F1]
          Length = 854

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 8/198 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VEEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  +  LK  +      R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLDRRLIQLKVESQALKKEEDEAAKKRLEKLTEEIERLE 452

Query: 772 LIHAKRKLQLNVEDLSCH 789
             ++  +     E     
Sbjct: 453 REYSDLEEIWASEKAEVQ 470


>gi|170723706|ref|YP_001751394.1| ATP-dependent chaperone ClpB [Pseudomonas putida W619]
 gi|169761709|gb|ACA75025.1| ATP-dependent chaperone ClpB [Pseudomonas putida W619]
          Length = 854

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 8/198 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VEEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  +  LK  +      R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLDRRLIQLKVESQALKKEEDEAAKKRLEKLTEEIERLE 452

Query: 772 LIHAKRKLQLNVEDLSCH 789
             ++  +     E     
Sbjct: 453 REYSDLEEIWASEKAEVQ 470


>gi|156082291|ref|XP_001608631.1| variant erythrocyte surface antigen-1 [Babesia bovis T2Bo]
 gi|154795878|gb|EDO05063.1| variant erythrocyte surface antigen-1, putative [Babesia bovis]
          Length = 1335

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 101/338 (29%), Gaps = 47/338 (13%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
            +A   +H          V+Q    +         + +    +          +      
Sbjct: 546 RTAPITVHEFNLFAHFQAVTQYCPLVLIGIQGGLHSTNSSTPAIHSLYANTECHFTYP-- 603

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
               T  +   + +     AL    Y   +R         G        G+ V    +++
Sbjct: 604 ----TVSIQAYNQVVHYIRALFYQLY--FLRKQCAVKVTCGGKWRECRYGSGVI-GKDVV 656

Query: 707 LLYIVSESSI-RAGIRRIEAITGQ--RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
               +  S +     +R+E + G+  +       ++E  +++A  LK    N+   V ++
Sbjct: 657 SWMCLGCSPMEHDRKKRVEKVNGELGKVLPQGKSEEEDDEAIAKTLKTLLENIGEVVVQL 716

Query: 764 WEEYRKLQLIH----AKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
                 L+        KR L    + L    +    N  + +   ++ K  + V D L+ 
Sbjct: 717 GNAQEALERRKGIDGVKRALDRAKDGLQRAKENDGENVGTRLYGILEEKVDEGVEDKLKD 776

Query: 819 ---KIQSGIIMLVGISKEKKASVLI--------VVTEDLLDRFNAV-DLARLSAKVLGGG 866
              K++  +  L       K   ++           +++    + V ++ R   K L   
Sbjct: 777 NLTKVKDALNALTTNGGNGKLKDVVDKLGNDPSSAKDNISAAIHNVLEVLRALMKGLE-- 834

Query: 867 GGGGRPHMAQSGGPNGN---KA---DQAIAGVASFLKK 898
                     + G N     K     +A+    S LK+
Sbjct: 835 ----------AAGKNEEAKKKLGNHQEALLNATSKLKE 862


>gi|330966360|gb|EGH66620.1| clpB protein [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 854

 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQEEIVRLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
             +A  +     E    
Sbjct: 453 KEYADLEEIWTSEKAEV 469


>gi|195047003|ref|XP_001992252.1| GH24649 [Drosophila grimshawi]
 gi|193893093|gb|EDV91959.1| GH24649 [Drosophila grimshawi]
          Length = 1566

 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 730  RARSHLMGQDEKLKSLA-SFLKVSQGNVVG-RVEEI-WEEYRKLQLIHAKRKLQLNVEDL 786
             A   +  ++ KLK L    LK+ Q  +   +V+E+  EE +  QL   + K +    DL
Sbjct: 973  EAVRAMQLEELKLKQLELEELKIKQLELEKLKVKELELEELKAKQLELEELKAKQLESDL 1032

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQ--KKIQSGIIMLVGISKE 833
                 +D + +     E +   LK  ++ L    + +  ++ ++  ++E
Sbjct: 1033 KPATPSDESQVLLQEKEAEIVHLKQRIEELMREDQTEKLVVEILTKNQE 1081


>gi|28868056|ref|NP_790675.1| clpB protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971039|ref|ZP_03399159.1| clpB protein [Pseudomonas syringae pv. tomato T1]
 gi|301384237|ref|ZP_07232655.1| clpB protein [Pseudomonas syringae pv. tomato Max13]
 gi|302059470|ref|ZP_07251011.1| clpB protein [Pseudomonas syringae pv. tomato K40]
 gi|302134988|ref|ZP_07260978.1| clpB protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|54035835|sp|Q889C2|CLPB_PSESM RecName: Full=Chaperone protein ClpB
 gi|28851292|gb|AAO54370.1| clpB protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213924147|gb|EEB57722.1| clpB protein [Pseudomonas syringae pv. tomato T1]
 gi|330878991|gb|EGH13140.1| clpB protein [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|331018391|gb|EGH98447.1| clpB protein [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 854

 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQEEIVRLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
             +A  +     E    
Sbjct: 453 KEYADLEEIWTSEKAEV 469


>gi|313497000|gb|ADR58366.1| ClpB [Pseudomonas putida BIRD-1]
          Length = 831

 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 8/198 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 257 LHTMVGAGKGEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEK--DAALERRFQKVL 314

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 315 VEEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 369

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  +  LK  +      R+E++ EE  +L+
Sbjct: 370 LIDEAASRIRMEIDSKPEVLDRLDRRLIQLKVESQALKKEEDEAAKKRLEKLTEEIERLE 429

Query: 772 LIHAKRKLQLNVEDLSCH 789
             ++  +     E     
Sbjct: 430 REYSDLEEIWASEKAEVQ 447


>gi|328468850|gb|EGF39810.1| putative alanyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 213

 Score = 46.3 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 73/225 (32%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+          EV    T FYAE+GGQ  D G   G  +   I    +    +      
Sbjct: 14  ELTSTVTRISDNEVELSHTIFYAESGGQESDAGTIDGIRVVGAIKSGSRIVYTL------ 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
             +   R    ++  ID+Q R  L   H A  ++    +     ++ + G+ I+ D  R 
Sbjct: 68  ERQPTFRVGDQVITQIDWQRRYVLMKLHFAAEVILELFTQKFA-NIQKVGAHISADKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D    + IT      +           +     I +                     R  
Sbjct: 127 DFEWPESITP-----LLAEFQQQAQAVIDSDAEIESAFSDEGQER------------RYW 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            VE       +   CGGTH+  T E+  + +    ++  G  R+E
Sbjct: 170 KVEGF-----AQVPCGGTHLKRTSEVGRIALKR-KNVGKGKERVE 208


>gi|83643616|ref|YP_432051.1| metal-dependent hydrolase [Hahella chejuensis KCTC 2396]
 gi|83631659|gb|ABC27626.1| predicted metal-dependent Hydrolase related to alanyl-tRNA
           synthetase HxxxH domain [Hahella chejuensis KCTC 2396]
          Length = 212

 Score = 46.3 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 30/220 (13%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             S Q   +  ++T FYA +GGQ  D G   G  +     + Q+    +   HA+     
Sbjct: 19  VTSVQDAVITVEETIFYALSGGQESDHGTIGGFRVISARKEEQEIFYELPEDHALQ---- 74

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 + +TID++ R +L   H A  L+       LG  V + G+ I  +  R D +  
Sbjct: 75  --VGDPVEITIDWERRYRLMRLHFAAELVLELFYRKLGR-VDKVGAHIAEEKARIDFSWP 131

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + I+                  LP +     R         +    + +   R   VE  
Sbjct: 132 QSISPL----------------LPDIDADAQRLIDENRDIISAFSDE-DAERRYWRVEGF 174

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                +   CGGTH++ TGE+  + +    ++     R+E
Sbjct: 175 -----AEVPCGGTHLTRTGEVGRISMKR-KNVGKDKERVE 208


>gi|312218512|emb|CBX98458.1| similar to nuclear condensin complex subunit Smc4 [Leptosphaeria
            maculans]
          Length = 1492

 Score = 46.3 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 59/183 (32%), Gaps = 39/183 (21%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGN------VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             +L     +++ L +    ++ +      +   +  + +E  KL    A  + ++     
Sbjct: 1031 RNLADCQRRIEELGAEQSSTKSDKGRVTSLEKTIASLEQEVAKLHTETADVEAEIKELQD 1090

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
               +I  V   S          LK  +D L  +  S  +     SKE K  +        
Sbjct: 1091 RIMEIGGVKLRSQKAK---VDGLKQQIDTLTDQASSAEV---SKSKEDKQRI-------K 1137

Query: 847  LDRFNAVDLARLS------AKVLGGGGGGGRPHM-AQ---SGG--PNGNKADQAIAGVAS 894
             ++ +A D  +        A+ +          M AQ   + G      +A +A+     
Sbjct: 1138 HEKAHA-DAIKELEKLAIEAEKIE-------EDMAAQHRDASGIRRQAEEAQEALETQKE 1189

Query: 895  FLK 897
             L+
Sbjct: 1190 ELE 1192


>gi|269986728|gb|EEZ93008.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 295

 Score = 46.3 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
              VRV+S+   D        C   HV  T EI++  +   S +  G   IE + G  A 
Sbjct: 100 EKEVRVISIGDYDFS-----ACKHLHVKQTKEIVMFTVKRISYLG-GETEIEFLAGTYAL 153

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             LM    ++ + A         ++  ++   E   +L+    +   ++  E+     + 
Sbjct: 154 MFLMQIKNQVINAAMERHFIPEKILDYIKNENERTNELEKEEKEIFYRILEENPQVILLK 213

Query: 793 DVNF 796
           +V  
Sbjct: 214 EVKI 217


>gi|145523043|ref|XP_001447360.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414871|emb|CAK79963.1| unnamed protein product [Paramecium tetraurelia]
          Length = 786

 Score = 46.3 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 40/96 (41%), Gaps = 11/96 (11%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH---------AKRKLQLNVEDL 786
             +  + + + + LK+    +  +VE++ ++ + +Q             ++K Q+ ++ L
Sbjct: 321 NQEKNRNQEMQTKLKIQNDELQQKVEKLQQQIKAVQNELTNTQSDQHFLQQKNQIEIDKL 380

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +         +     E++   L  ++D L+ + + 
Sbjct: 381 NAELNKAKKGLDQRQDEINQYLL--IIDQLKSETKE 414


>gi|330881337|gb|EGH15486.1| clpB protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 855

 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 281 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 338

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 339 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 393

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++ EE  +L+
Sbjct: 394 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQEEVVRLE 453

Query: 772 LIHAKRKLQLNVEDLSC 788
             +A  +     E    
Sbjct: 454 KEYADLEEIWTSEKAEV 470


>gi|298485415|ref|ZP_07003504.1| ClpB protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160065|gb|EFI01097.1| ClpB protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 854

 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQEEVVRLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
             +A  +     E    
Sbjct: 453 KEYADLEEIWTSEKAEV 469


>gi|289651391|ref|ZP_06482734.1| clpB protein [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 854

 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQEEVVRLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
             +A  +     E    
Sbjct: 453 KEYADLEEIWTSEKAEV 469


>gi|71736209|ref|YP_273034.1| clpB protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257481615|ref|ZP_05635656.1| clpB protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289627152|ref|ZP_06460106.1| clpB protein [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|71556762|gb|AAZ35973.1| clpB protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320326251|gb|EFW82305.1| clpB protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330675|gb|EFW86652.1| clpB protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330869194|gb|EGH03903.1| clpB protein [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330988808|gb|EGH86911.1| clpB protein [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331008772|gb|EGH88828.1| clpB protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 854

 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQEEVVRLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
             +A  +     E    
Sbjct: 453 KEYADLEEIWTSEKAEV 469


>gi|18310596|ref|NP_562530.1| cell wall-binding protein [Clostridium perfringens str. 13]
 gi|18145277|dbj|BAB81320.1| probable cell wall-binding protein [Clostridium perfringens str.
           13]
          Length = 441

 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMSH----IISEV-----DSKELKSVMDALQKKIQSGII 825
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S   
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKS--- 277

Query: 826 MLVGISKEKKAS 837
           + V      K+S
Sbjct: 278 VKVNSDNNSKSS 289


>gi|13541587|ref|NP_111275.1| metal-dependent hydrolase [Thermoplasma volcanium GSS1]
 gi|14324983|dbj|BAB59909.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 236

 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 76/215 (35%), Gaps = 6/215 (2%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +  ++  D++ FY    G+  DTG  I +G   QI D     E I +  ++         
Sbjct: 24  EFTDMKVDKSIFYPTLFGEPNDTGKVIIEGKEYQIVDTIYDGEYIHL-ISMDTYPQGLVG 82

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            S+   ID++ R       +A  L+      + G     N +      +  +      IT
Sbjct: 83  KSVKQVIDWEKRYVHMRFRTALRLISGLSYKLWGVSCRVNETYDDRAWIDIEKPD---IT 139

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E+  +    N+++ QNL +    ++ ++ +       +    ++      +       
Sbjct: 140 EEEITEVMSKANEMVKQNLEISFSYISMDEFLNRDDLKKM--SIHETFDDEKIRIMRVPG 197

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  G +V +TGE+  +   +  +      RI
Sbjct: 198 LPDQPEFGVNVKNTGEVGEIKYKTTKARGKVSNRI 232


>gi|154311339|ref|XP_001554999.1| hypothetical protein BC1G_06522 [Botryotinia fuckeliana B05.10]
 gi|150850919|gb|EDN26112.1| hypothetical protein BC1G_06522 [Botryotinia fuckeliana B05.10]
          Length = 272

 Score = 46.3 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 83/248 (33%), Gaps = 20/248 (8%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-------GDGIRLQIT 544
           V A+    +   +  S  +  ++ D T FY + GGQ  DTG               ++  
Sbjct: 28  VSALSVPDQAFLKDSSEIENAIITDSTIFYVQGGGQPYDTGTMTSEVTDKANSIFEVKSV 87

Query: 545 DVQKKAEGIFVHHAIVERGILR--TEMSLVLTIDYQNRRQLSINHSATHLLH----HALS 598
               +   I      V  G         +   ID + R   S  H+A H+L       + 
Sbjct: 88  RQPAQGSQILHLGRFVPVGTPHFENGEEVHQHIDAEKRNLYSRFHTAGHILSLAILALVR 147

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             + S ++++ +   PD           I      +I+   ++ +    PV     + E+
Sbjct: 148 EGVLSPLTESKASHYPDSAAVVF--GGSIEGKHKDAIQAKTDEFVKLARPVSIHWWSMEE 205

Query: 659 AIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                          +  V    VE E  G +    CGGTHV   G++  + +   S   
Sbjct: 206 VREKCSGVTEDFALPDGEVMARVVEMEGLGSY---PCGGTHVHDCGQVGKIEVKKISR-S 261

Query: 718 AGIRRIEA 725
            G+ R+  
Sbjct: 262 KGLTRVSY 269


>gi|169342798|ref|ZP_02863832.1| peptidase, M23/M37 family protein [Clostridium perfringens C str.
           JGS1495]
 gi|169299055|gb|EDS81127.1| peptidase, M23/M37 family protein [Clostridium perfringens C str.
           JGS1495]
          Length = 441

 Score = 45.9 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMSH----IISEV-----DSKELKSVMDALQKKIQSGII 825
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S   
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKS--- 277

Query: 826 MLVGISKEKKAS 837
           + V      K+S
Sbjct: 278 VKVNSDNNSKSS 289


>gi|110798595|ref|YP_696301.1| peptidase, M23/M37 family protein [Clostridium perfringens ATCC
           13124]
 gi|110673242|gb|ABG82229.1| peptidase, M23/M37 family protein [Clostridium perfringens ATCC
           13124]
          Length = 441

 Score = 45.9 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMSH----IISEV-----DSKELKSVMDALQKKIQSGII 825
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S   
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKS--- 277

Query: 826 MLVGISKEKKAS 837
           + V      K+S
Sbjct: 278 VKVNSDNNSKSS 289


>gi|123435193|ref|XP_001308954.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121890658|gb|EAX96024.1| hypothetical protein TVAG_369340 [Trichomonas vaginalis G3]
          Length = 148

 Score = 45.9 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 8/153 (5%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
             ++      H+  H+L+  +  I     S  G+ +     + D   ++ +T  E K IE
Sbjct: 1   MSHKNYDPPMHTTEHILNRTMDNIFKCGRSI-GTHLEKKKSKCDYPLNRDLTPEEKKLIE 59

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCG 695
           + VN ++A+NL V    +   +A      + L     +  +R++ +   D        C 
Sbjct: 60  NTVNGVLAKNLEVKAIFLPPAEAAKLVDISKLPEGATDADIRIIQIGDYDN-----CACI 114

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRRIEAIT 727
           G HV+ TG+I     I S S  + GI RI    
Sbjct: 115 GPHVAKTGDIKGRFKITSTSLEQNGICRIRWTC 147


>gi|330962677|gb|EGH62937.1| clpB protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 854

 Score = 45.9 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  + +  + R+E++ +E  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDDAAIKRLEKLQDEIVRLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
             +A  +     E    
Sbjct: 453 KEYADLEEIWTSEKAEV 469


>gi|322696431|gb|EFY88223.1| threonyl/alanyl tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 279

 Score = 45.9 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 81/240 (33%), Gaps = 25/240 (10%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG---------IRLQITDVQKKAEGIFVHH 557
           +     VV  +T F+ + GGQ  D G                R++   +        +H 
Sbjct: 45  ADDDFVVVTGETIFHPQGGGQPSDQGFMNWSPNGTTAADLSFRVEAVRMDAVNGSQVLHL 104

Query: 558 AIVERG----ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
                      L+    +   +D + R   S  H+A H+L  A+ ++L + +        
Sbjct: 105 GSFTTPAAASQLQPGDRVKQVLDVEKRLLYSRLHTAGHVLGSAVRSLLETEIPGFDELKA 164

Query: 614 PDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
                      +     + K  I+  VN+ + +++PV       +D    G   L+  + 
Sbjct: 165 SHFPDSAACEFRGAIEGKWKEPIQRRVNEYLERSMPVEIDFWTEQDFCREGLERLIPDRS 224

Query: 673 -----NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                 D+ RVV +   +        CGGTHV +T       +   +    GI R+    
Sbjct: 225 LLPPGEDKFRVVRIVGAEVY-----PCGGTHVDTTDLCGETTVKKIAR-SKGISRVSYTV 278


>gi|325279389|ref|YP_004251931.1| Threonyl/alanyl tRNA synthetase SAD [Odoribacter splanchnicus DSM
           20712]
 gi|324311198|gb|ADY31751.1| Threonyl/alanyl tRNA synthetase SAD [Odoribacter splanchnicus DSM
           20712]
          Length = 161

 Score = 45.9 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 7/154 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+++    H+A H+L+  +  + G   S+N + I     + D   S   T+  
Sbjct: 11  EIQLNGHNKQEYPPMHTAEHILNQTMIRMFGCERSKN-THIERKKSKCDYILSVEPTAEM 69

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  IE+ VN++I Q+LPV T  + RE+       + L    +  +R+V +   D     +
Sbjct: 70  ITEIENRVNEVIGQDLPVTTCFVTREEVPEGVDLSKLPEDASATLRIVKIGEYD-----T 124

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             C G HV +T EI    I+S     +   R+  
Sbjct: 125 CACIGQHVGTTAEIGKFKIISW-DFESNRLRLRF 157


>gi|110803840|ref|YP_698903.1| peptidase, M23/M37 family protein [Clostridium perfringens SM101]
 gi|110684341|gb|ABG87711.1| peptidase, M23/M37 family protein [Clostridium perfringens SM101]
          Length = 431

 Score = 45.9 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-VEDLS 787
            +    +    ++LKS  S LK  +  +  +  ++  E ++   + ++ + QLN +  L 
Sbjct: 174 NKLIDDIKKVQDELKSEESQLKSQEEELSSKKTKLENEKKEYDNLVSQYQSQLNELNSLE 233

Query: 788 CHKIADVNFMS----HIISEV-----DSKELKSVMDALQKKIQS 822
             K A++N +S     ++ E+     D+  LK  ++ L  + +S
Sbjct: 234 EQKQAEINSLSEKERAVLDEINSYEEDNANLKDYINNLINEKKS 277


>gi|46275221|emb|CAG25712.1| putative alanyl tRNA synthetase [Candida parapsilosis]
          Length = 143

 Score = 45.9 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 54/124 (43%), Gaps = 13/124 (10%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVE----------EIWEEYRKLQLIHAKRKLQLNVEDLS 787
           ++ K+K L   LK    +V+ + +           I +  + +Q   +K+ L +  + L 
Sbjct: 17  KENKVKELGVALKKLSISVLDKQKLTEKFNKVDKSIKDHQKSIQKEESKKTLDVVKKWLD 76

Query: 788 CHKIADVN--FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                + +   ++HI    ++K +    + ++K+ ++  + L+    + K +    V+++
Sbjct: 77  EGDDNNKSEFLVAHIPINANAKAITEAFNLVKKQDKTKSLYLLTGQND-KVAHGCYVSDE 135

Query: 846 LLDR 849
            + +
Sbjct: 136 AIAK 139


>gi|193216773|ref|YP_002000015.1| massive surface protein MspC [Mycoplasma arthritidis 158L3-1]
 gi|193002096|gb|ACF07311.1| massive surface protein MspC [Mycoplasma arthritidis 158L3-1]
          Length = 2719

 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 28/126 (22%)

Query: 729  QRARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
              A   L      L++  + L   K +Q  +  ++EEI  + ++LQ   AK++ + ++  
Sbjct: 936  NEAEDALKNAKNDLENKKNSLVGDKENQDKIDKKLEEIVNKQKELQKEKAKQQSEDDLAK 995

Query: 786  LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               ++               +K LK  +D L  K+            EKK        +D
Sbjct: 996  QLANE---------------AKTLKDELDDLVNKLNP---YDASSDYEKKI-------KD 1030

Query: 846  LLDRFN 851
            + D+  
Sbjct: 1031 VEDKIK 1036



 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 40/194 (20%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK------LQLIHAKRKLQLN 782
           + A      + ++L+   + LK +   ++  + +   E         +Q +  K K   N
Sbjct: 139 KEALDEAKAKLKELQEKEAKLKENAQKLLAEINQALSEVPDAKLPLVIQSLINKLKNLAN 198

Query: 783 VEDLSCHKIADVNFMSHIISEVDSK-ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
             +    ++ +   +       D+  ++K  +  LQK+       L+  S E+   +   
Sbjct: 199 ASEALQQELNNSRLIEEAKKLSDANLQIKDAISELQKR-------LLDKSPEELEKLAKE 251

Query: 842 VTEDLLDRFNAVDLARLS----------------AKVLGGGGGGGRPHMAQSGGPN--GN 883
             +DL     AV+ A+                  AK L           A + G +    
Sbjct: 252 KIKDLEKAKKAVEDAKNISTLPNALESLKKDLDQAKEL--------KDHATAKGLDELAK 303

Query: 884 KADQAIAGVASFLK 897
           + D+AI    + LK
Sbjct: 304 ELDKAIKDAENSLK 317



 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 736 MGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            G DE  K L   +K ++ ++     ++E+I +E +KLQ        ++         I+
Sbjct: 296 KGLDELAKELDKAIKDAENSLKHGTEKLEKIKQENQKLQNDINALVNKI------AKDIS 349

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           D N ++    + + K LK   D L+K IQ  
Sbjct: 350 DANKLTLQSEDSEFKRLK---DELKKDIQEA 377


>gi|167508997|gb|ABZ81638.1| SiM protein [Streptococcus iniae]
          Length = 579

 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 63/166 (37%), Gaps = 30/166 (18%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              ++ +   ++ L   A  L+     +   +E+   E ++L+   A+ K +L       
Sbjct: 377 PALKAKVAELEKALAE-AKGLEAKVAELEKALEKAQAEAKELEAKLAETKAELEKVQAEK 435

Query: 789 HKIADV-----NFMSHIISEVDS---------KELKSVMDALQKKIQSGIIMLVGISKEK 834
            ++           +  + ++++         +EL  ++  L+K++++       +S E+
Sbjct: 436 AELEATIETMKKEHAEELDKLNALLADKEKLNEELNKMIADLKKELENQ----ANLSNEE 491

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           KA +     +  L++    +LA      +G   G     MA   G 
Sbjct: 492 KAQL-----KAELEKLK-QELAAKINMPMGNTKG-----MANGAGN 526


>gi|303271627|ref|XP_003055175.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463149|gb|EEH60427.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 202

 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
             EKK +++  VTE+  ++ NA++  +   +   GGG GG P 
Sbjct: 99  EPEKKIAMVAYVTEEHKEKINAIEWMKSVCETDLGGGVGGTPD 141


>gi|313236047|emb|CBY11373.1| unnamed protein product [Oikopleura dioica]
          Length = 3979

 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             +D+ L  L   +     ++  +VE   +E + LQ +  +   QL        K+   N
Sbjct: 445 AEKDKSLDELKINMDSLNASIGDKVESTKDEIKNLQKLLDELNQQLADSQAENDKLQSEN 504

Query: 796 FMSHI-ISEVDSKE------------LKSVMDALQKKIQSG 823
             + I ++E++S              L+ ++D L++++ + 
Sbjct: 505 SKTKIALNEMNSNAESLSESLGEIETLRKLLDELKQELANS 545



 Score = 45.5 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 44/105 (41%), Gaps = 17/105 (16%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              +  +  ++  L + LK ++ ++     R++E+  E +K + +       + + + +C 
Sbjct: 3017 QEIEQKTSRISELEALLKAAEEDLSTSKERLKELENEKKKAETLILNLNNAIYLIEGNCK 3076

Query: 790  KI--------------ADVNFMSHIISEVDSKELKSVMDALQKKI 820
            KI               + N +    ++ D+  ++ + D L+ ++
Sbjct: 3077 KIMASVELLHSTNDDLNERNNVLAEQNDHDAASIQELQDQLKSQL 3121



 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 742  LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF-MSHI 800
            L    + L+V + ++  ++ ++ E  + L     K K+ L  E+ S  K+ + N  +   
Sbjct: 2917 LNENLNKLEVDKISLNNQINQLAENVKILNDEIIKLKMALQSENESNSKLQETNVALEKQ 2976

Query: 801  ISEVDSKELKSVMDALQKKIQS 822
            I  ++SK L+S+    +   +S
Sbjct: 2977 IDILESK-LRSLTAEQKDLKKS 2997


>gi|260770348|ref|ZP_05879281.1| alanyl-tRNA synthetase domain protein [Vibrio furnissii CIP 102972]
 gi|260615686|gb|EEX40872.1| alanyl-tRNA synthetase domain protein [Vibrio furnissii CIP 102972]
          Length = 212

 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 81/218 (37%), Gaps = 32/218 (14%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G +VE+  ++T FYAE+GGQ  DTG   G  +       +     +       +     
Sbjct: 23  EGDQVEL--EETIFYAESGGQESDTGTIAGITVLKAEKQGRTIRYTL------EQTPAFS 74

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + + ID+  R QL   H A  L+          +V + G+ I+ D  R D    + 
Sbjct: 75  VGEEVWVKIDWPRRYQLMKLHFAAELVLELFYQQFS-NVEKIGAHISQDKSRIDFYWPES 133

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           I                   LP VT   N   A  +   +    +  +  R   VE    
Sbjct: 134 IAPL----------------LPSVTEQANHLIAQDTPILSAFSDE-AEERRYWQVEGF-- 174

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              +   CGGTH+ STGE+  + +    +I  G  R+E
Sbjct: 175 ---AKVPCGGTHLKSTGEVGPIRLKR-KNIGGGKERVE 208


>gi|89055055|ref|YP_510506.1| MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor
           [Jannaschia sp. CCS1]
 gi|88864604|gb|ABD55481.1| MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor
           [Jannaschia sp. CCS1]
          Length = 1089

 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 76/197 (38%), Gaps = 6/197 (3%)

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            G  A        RV             + ++C       TGE  LL  +   +  A I 
Sbjct: 584 QGLIATAMKTKERRVGRWHDISGPDFNQARSVCFPLPGVDTGEDHLLVALETRTKDAQIA 643

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           ++E ++G   ++++   + ++      L+ +   +    EE+     ++Q  + + +   
Sbjct: 644 KVETLSGDEQQTYIRQMELEVAQTREALQQTVEELQTTNEELQSINEEMQSTNEELQATN 703

Query: 782 NVEDLSCHKIADVN--FMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
              + S  ++   N   ++     +V+S EL+ V   L   ++   ++   +    +A +
Sbjct: 704 EELETSNEELQSTNEELITVNEELQVNSAELQRVSTELAATLE---VVPFPVLVIDQALI 760

Query: 839 LIVVTEDLLDRFNAVDL 855
           +   ++  + +FN  DL
Sbjct: 761 VRRASQAAMSQFNIGDL 777


>gi|168207170|ref|ZP_02633175.1| peptidase, M23/M37 family protein [Clostridium perfringens E str.
           JGS1987]
 gi|170661476|gb|EDT14159.1| peptidase, M23/M37 family protein [Clostridium perfringens E str.
           JGS1987]
          Length = 441

 Score = 45.9 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMSH----IISEV-----DSKELKSVMDALQKKIQSGII 825
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S   
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKS--- 277

Query: 826 MLVGISKEKKAS 837
           + V      K+S
Sbjct: 278 VKVNSENNSKSS 289


>gi|168209316|ref|ZP_02634941.1| peptidase, M23/M37 family protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170712559|gb|EDT24741.1| peptidase, M23/M37 family protein [Clostridium perfringens B str.
           ATCC 3626]
          Length = 441

 Score = 45.9 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 12/117 (10%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMSH----IISEV-----DSKELKSVMDALQKKIQS 822
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKS 277


>gi|168217995|ref|ZP_02643620.1| peptidase, M23/M37 family protein [Clostridium perfringens NCTC
           8239]
 gi|182379986|gb|EDT77465.1| peptidase, M23/M37 family protein [Clostridium perfringens NCTC
           8239]
          Length = 441

 Score = 45.9 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 57/128 (44%), Gaps = 12/128 (9%)

Query: 707 LLYIVSESSIRAGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +L   +     + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++ 
Sbjct: 150 MLESKNVGDFVSNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLE 209

Query: 765 EEYRKLQLIHAKRKLQLN-VEDLSCHKIADVNFMSH----IISEV-----DSKELKSVMD 814
            E ++   + ++ + QLN +  L   K +++N +S     ++ E+     D+  LK  ++
Sbjct: 210 NEKKEYDTLVSQYQSQLNELNSLEEEKQSEINSLSEKERTVLDEINSYEEDNANLKDYIN 269

Query: 815 ALQKKIQS 822
            L  + +S
Sbjct: 270 NLINEKKS 277


>gi|168213583|ref|ZP_02639208.1| peptidase, M23/M37 family protein [Clostridium perfringens CPE str.
           F4969]
 gi|170714919|gb|EDT27101.1| peptidase, M23/M37 family protein [Clostridium perfringens CPE str.
           F4969]
          Length = 441

 Score = 45.9 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 12/117 (10%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMSH----IISEV-----DSKELKSVMDALQKKIQS 822
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKS 277


>gi|254974324|ref|ZP_05270796.1| putative DNA mismatch repair protein [Clostridium difficile
           QCD-66c26]
 gi|255091720|ref|ZP_05321198.1| putative DNA mismatch repair protein [Clostridium difficile CIP
           107932]
 gi|255313448|ref|ZP_05355031.1| putative DNA mismatch repair protein [Clostridium difficile
           QCD-76w55]
 gi|255516136|ref|ZP_05383812.1| putative DNA mismatch repair protein [Clostridium difficile
           QCD-97b34]
 gi|255649232|ref|ZP_05396134.1| putative DNA mismatch repair protein [Clostridium difficile
           QCD-37x79]
 gi|260682406|ref|YP_003213691.1| putative DNA mismatch repair protein [Clostridium difficile CD196]
 gi|260686005|ref|YP_003217138.1| putative DNA mismatch repair protein [Clostridium difficile R20291]
 gi|260208569|emb|CBA61251.1| putative DNA mismatch repair protein [Clostridium difficile CD196]
 gi|260212021|emb|CBE02571.1| putative DNA mismatch repair protein [Clostridium difficile R20291]
          Length = 792

 Score = 45.5 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 61/150 (40%), Gaps = 23/150 (15%)

Query: 730 RARSHLMGQDEKLKS-LASFLKVSQGNVVGR--VEEIWEEYRKLQLIHAKRKLQLNVED- 785
           RA+ ++  ++  L+  L +  K     V  R   E + EE  KL++ + ++  +L  +  
Sbjct: 507 RAKEYINTENIALEDVLQNVEKNRIKAVEDREEAERLKEEIEKLKVEYDEKLEKLVSQRD 566

Query: 786 --LSCHKIADVNFMSHIISEVD--SKELKSV------------MDALQKKIQSGIIMLVG 829
             +   K    + +     EVD   KEL+++            ++ L+K++ S    +  
Sbjct: 567 KMIEKAKSEAFSIIRQAKEEVDIIIKELRNLEQERASKEKNRKIEELRKELTSS---MGS 623

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           +    K+ ++  V+   +      +  ++ 
Sbjct: 624 LQPTVKSMIVPKVSNKEIKDLKPGEEVKVI 653


>gi|182626086|ref|ZP_02953847.1| peptidase, M23/M37 family protein [Clostridium perfringens D str.
           JGS1721]
 gi|177908607|gb|EDT71128.1| peptidase, M23/M37 family protein [Clostridium perfringens D str.
           JGS1721]
          Length = 441

 Score = 45.5 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 12/117 (10%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMSH----IISEV-----DSKELKSVMDALQKKIQS 822
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKS 277


>gi|315181416|gb|ADT88329.1| Threonyl/alanyl tRNA synthetase SAD [Vibrio furnissii NCTC 11218]
          Length = 212

 Score = 45.5 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 81/218 (37%), Gaps = 32/218 (14%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G +VE+  ++T FYAE+GGQ  DTG   G  +       +     +       +     
Sbjct: 23  EGDQVEL--EETIFYAESGGQESDTGTIAGIAVLKAEKQGRTIRYTL------EQTPAFS 74

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + + ID+  R QL   H A  L+          +V + G+ I+ D  R D    + 
Sbjct: 75  VGEEVWVKIDWPRRYQLMKLHFAAELVLELFYQRFS-NVEKIGAHISQDKSRIDFYWPES 133

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           I                   LP VT   N   A  +   +    +  +  R   VE    
Sbjct: 134 IAPL----------------LPSVTEQANHLIAQDTPILSAFSDE-AEERRYWQVEGF-- 174

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              +   CGGTH+ STGE+  + +    +I  G  R+E
Sbjct: 175 ---AKVPCGGTHLKSTGEVGPIRLKR-KNIGGGKERVE 208


>gi|124504771|ref|XP_001351128.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|74873273|sp|O97237|YGCC1_PLAF7 RecName: Full=GRIP and coiled-coil domain-containing protein
           PFC0235w
 gi|15375376|emb|CAB39003.2| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 1139

 Score = 45.5 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---------LIHAKRKLQLNVE 784
            +  + ++LK++   LK +   +   +  +  E +K++              +     V 
Sbjct: 592 DVQKEKKELKTINEVLKNTNEKLEKEITSLLGEMKKIEEENKVLKIFKEEKNKINNEKVT 651

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
            +    I D N M      +D+K    ++      ++  I+    I K+K   ++ 
Sbjct: 652 QIKGDDINDDNDMKFKQILLDNKTFNKLLVNELNIVEENILFCFSIDKDKNRLLVC 707


>gi|326797103|ref|YP_004314923.1| Alanyl-tRNA synthetase, class IIc [Marinomonas mediterranea MMB-1]
 gi|326547867|gb|ADZ93087.1| Alanyl-tRNA synthetase, class IIc [Marinomonas mediterranea MMB-1]
          Length = 213

 Score = 45.5 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 73/212 (34%), Gaps = 30/212 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V   QT FYAE+GGQ  D G   G  + L     ++    +        +   +   ++V
Sbjct: 27  VELHQTIFYAESGGQESDKGTINGIPVVLATKHGKRIIYTL------ERQPDFKVGDTVV 80

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+Q R  L   H A  ++         + + + G+ I+ D  R D    + I     
Sbjct: 81  TQIDWQRRYALMKLHFAAEVVLETF-YQHFTGMIKVGAHISQDKSRIDFEWPESIAP--- 136

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
                         +     I  +    +    A       +  R   V+       +  
Sbjct: 137 --------------ILKEIEIEAQALLDSDLIIASDFADEANEKRYWRVDGF-----AQV 177

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            CGGTH+  T E+  L +    +I  G  R+E
Sbjct: 178 ACGGTHLKRTSEVGCLQLKR-KNIGKGKERVE 208


>gi|161598611|ref|YP_001573826.1| tRNA synthetase-related protein [Bacillus thuringiensis serovar
           israelensis]
 gi|21685478|emb|CAD30140.1| tRNA synthetase-related protein [Bacillus thuringiensis serovar
           israelensis]
          Length = 235

 Score = 45.5 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 75/230 (32%), Gaps = 33/230 (14%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG--------IRLQITDVQK--KAEGIF 554
               +  ++  +QT FY E GGQ+GD G   G+           L         K     
Sbjct: 19  ITKIEDNKIFLNQTVFYPEGGGQIGDQGWIEGNEVIDTQKTGGNLFYHSNFPIIKVGSEV 78

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
            H        LR  M +   I+++ R  L   H+A HL+++    + G  +   G  I  
Sbjct: 79  AHILKEPVKGLREGMEVKAKINWERRHMLMRMHAAAHLVYYYTFQVFG-EMYVKGCHIAE 137

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D  RFD          E     +   ++I  +   +  I   E+  A             
Sbjct: 138 DRARFDFYSPDKRLDREGLDKVEEFANLIVTDNIPIKNIPLNEEPEAINWIC-------- 189

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                              CGGTHV  TG+I  + +   S     + R+ 
Sbjct: 190 -------------GDMHIPCGGTHVRQTGDIGEISVRRNSR-GKNLERMY 225


>gi|242399561|ref|YP_002994986.1| Hydrolase, HAD superfamily [Thermococcus sibiricus MM 739]
 gi|242265955|gb|ACS90637.1| Hydrolase, HAD superfamily [Thermococcus sibiricus MM 739]
          Length = 301

 Score = 45.5 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 8/129 (6%)

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           ++L+ I + S +   IR I            +  +  +K+L+  LKV +  +  +  +  
Sbjct: 59  LLLITISNFSKVMTMIRLISFDVWNTLLDINVMIENLVKALSELLKVPEEEIAEKTIKTR 118

Query: 765 EEYRKL--------QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           EE +K+        +    + +  L        +I         +S  +   L  V + L
Sbjct: 119 EEIKKIRKSRSGDPEKALEESQELLARALEVDVEIVKRAVAKATLSVDERIVLPEVKETL 178

Query: 817 QKKIQSGII 825
           +K     II
Sbjct: 179 KKLHGKYII 187


>gi|193216886|ref|YP_002000128.1| massive surface protein MspH [Mycoplasma arthritidis 158L3-1]
 gi|193002209|gb|ACF07424.1| massive surface protein MspH [Mycoplasma arthritidis 158L3-1]
          Length = 2438

 Score = 45.5 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            + A   L    +KL      LK    N+  ++ +  EE  + Q   A  K Q      + 
Sbjct: 941  KEAEDALKDAHKKLNEEKDKLKGDAQNL-EKITKKLEEIEQKQQDLANVKKQQEQSKEAR 999

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             K      ++    ++ + EL++++  L++KI+   I       E K +
Sbjct: 1000 AKE-----LAEQAKQLQT-ELENLVKELKEKIKFTDITAKANEVENKVN 1042



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 59/147 (40%), Gaps = 16/147 (10%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRK----LQLIHAKRKLQLNVEDLS 787
           + +   ++ L+   S  K ++ + +    +++ +   K    L+    K +  +   +  
Sbjct: 277 NAIKKLEKDLEDAKSLEKDAKDDGLNDVAKKLQDAINKGQEALKKGKEKEQKIIEANNAL 336

Query: 788 CHKIADVNFMSHIISEV-DSKEL-----KSVMDALQKKIQSGI--IMLVGISKEKKASVL 839
             K+ +   ++ I  +V D+ +L      S+++  +  ++  I     +    E  A++L
Sbjct: 337 IKKVNE--LVAKITKDVNDANQLSAQSEDSLINNTKSALEEDIKQAEKLAKQAED-ATLL 393

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGG 866
             V +    ++ A +  +   +++   
Sbjct: 394 AEVNKVKDAKYKAEEALKKINEIIAQK 420



 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 15/107 (14%)

Query: 733  SHLMGQDEKLKSLASFLK-------VSQGNVVGRVEEIWEEYRKLQLIHAKRKL---QLN 782
              L   ++K + LA+  K            +  + +++  E   L     ++        
Sbjct: 973  KKLEEIEQKQQDLANVKKQQEQSKEARAKELAEQAKQLQTELENLVKELKEKIKFTDITA 1032

Query: 783  VEDLSCHKIADVNFMSHIISE-----VDSKELKSVMDALQKKIQSGI 824
              +   +K+ ++N     +        D   LK     L+K I    
Sbjct: 1033 KANEVENKVNNINGNFLKVGGEADKLKDHDHLKDAYKELKKAIDDAA 1079


>gi|256384051|gb|ACU78621.1| putative membrane protein [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384883|gb|ACU79452.1| putative membrane protein [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455868|gb|ADH22103.1| putative membrane protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 907

 Score = 45.5 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 54/143 (37%), Gaps = 21/143 (14%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  Q +    L    + ++  +  R++E+ +  ++L    +K KL+        +   
Sbjct: 202 ELLNKQKDLEVKLNEK-QTNEKQLEKRIDELVKTNKELTDELSKLKLENLNSKTELNNAN 260

Query: 793 -----DVNFM-------SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL- 839
                 VN +          + E+  K L ++++A   +++  + +     K  KA ++ 
Sbjct: 261 LALDELVNILEIQELEYEQKLEELQVKSLSNLLNA--NRVKRALEVANNSDKTNKAELVK 318

Query: 840 ----IVVTEDLLDRFNAVDLARL 858
               + V    + +  A +L + 
Sbjct: 319 LNEQLQVQASEIKQVKA-ELVKA 340



 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 732 RSHLMGQDEKLKSLASFL-----KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            +    Q ++L  L   L     K     +  ++EE+ +E  K +   A  K  L   DL
Sbjct: 752 LNKFKEQKQELDQLKQKLASTVNKNEISKLQSKIEELNQELDKKKKELAAFKSSLTTRDL 811

Query: 787 SCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           S  K  +  +N + + I   D  + K++   L+ K +  I+
Sbjct: 812 SALKTLVWQINTIYYFILN-DLNDYKNL-KELKPKTKEDIL 850


>gi|71755173|ref|XP_828501.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70833887|gb|EAN79389.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 240

 Score = 45.5 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ--RARSHLMGQDEKLKS 744
           G   + +    H S TGE   L       + +  RR+     +   A   +   ++ LK 
Sbjct: 92  GPLPAEVREIIHNSCTGEDAELAERQARRLLSTSRRVHVYRAELQSAIEEVKDVEQLLKR 151

Query: 745 ---LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
              + + L+    ++ GR+E++ +E R  ++   ++  +         +           
Sbjct: 152 HQVIQTALRTELNDLNGRIEQLLKERRLCEIQLQQQGDEEQRRAAKLQEAN--------- 202

Query: 802 SEVDSKELKSVMDALQKKIQSGIIML 827
             +    L+S +D +  +  +G ++L
Sbjct: 203 --MRVDILRSTIDKITNETLAGHVLL 226


>gi|156083663|ref|XP_001609315.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia bovis
           T2Bo]
 gi|154796566|gb|EDO05747.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia
           bovis]
          Length = 1338

 Score = 45.5 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 21/125 (16%)

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK--EKKA------SV 838
              +I+D        S  D  + K +   L +KI   ++ L    +  E KA       V
Sbjct: 665 KVGEISDALVKKVEASGGDGDDGKEL-KDLLEKIGEVVVQLGNAQEALEGKAESKVIEGV 723

Query: 839 LIVVTEDLLD-----RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            + +T+   +       NA +  +   K L  G GGG+       G    + + A+    
Sbjct: 724 KVALTKAKTELEGVVDENANNELKEKIKELTNGSGGGK-------GNLLGEVEGALENAK 776

Query: 894 SFLKK 898
           +  K+
Sbjct: 777 NIEKE 781


>gi|242058501|ref|XP_002458396.1| hypothetical protein SORBIDRAFT_03g032760 [Sorghum bicolor]
 gi|241930371|gb|EES03516.1| hypothetical protein SORBIDRAFT_03g032760 [Sorghum bicolor]
          Length = 1296

 Score = 45.5 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDLS 787
           AR  L       +     LKV++  +  RVEE+    +  +KL++   K K +   +   
Sbjct: 51  ARKELRKLRMAARD-TQALKVAKEKLEERVEELTSRLDREKKLRVDLEKSKAEEVSKLKE 109

Query: 788 C-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
                  ++ +V  M         +  K  ++    + +  I +L    +  KA ++   
Sbjct: 110 ALQEMEQRVEEVKAMQEQ------ESAKKAVEEALAQEREKISLLTTEIEGLKALLVAER 163

Query: 843 TE-DLLDRFNAVDL 855
            E D+  + +A  L
Sbjct: 164 EENDVAKKAHANAL 177


>gi|260778279|ref|ZP_05887172.1| alanyl-tRNA synthetase domain protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606292|gb|EEX32577.1| alanyl-tRNA synthetase domain protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 213

 Score = 45.5 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 69/225 (30%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E++      +   +  D+T FYAE+GGQ  D G   G  +        +    +      
Sbjct: 14  ELLSTVSWIEGRNLRLDKTIFYAESGGQESDEGTIAGIQVECAQKQGSEITYTLAAE--- 70

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 +    ++  I++  R  L   H A  ++    +      + + G+ I  D  R 
Sbjct: 71  ---PPFQVGDEVITVINWTRRYALMKLHFAAEVILELFTQ-SYPDIEKIGAHIGQDKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D    + ++                  L        +                    R  
Sbjct: 127 DFVWPESLSP-----------------LLPEFENKAQALINKGQLIESQFEDKASERRFW 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            VE       +   CGGTH+  T E+  + +    +I  G  R+E
Sbjct: 170 RVEGF-----AQVACGGTHLRRTSEVGKIALKR-KNIGRGKERVE 208


>gi|331703238|ref|YP_004399925.1| transmembrane protein [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|331703319|ref|YP_004400006.1| transmembrane protein [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801793|emb|CBW53946.1| Hypothetical protein, predicted transmembrane protein (part of ICE)
           [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328801874|emb|CBW54027.1| Conserved hypothetical protein, predicted transmembrane protein
           (part of ICE) [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 911

 Score = 45.5 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 732 RSHLMGQDEKLKSLASFL-----KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            S    Q ++L  L   L     K     +  R+EE+ +E  K +   A  K  L   DL
Sbjct: 752 LSKFQKQKQELDQLKQKLASTVDKSEINQLQSRIEELNQELDKKKKELAAFKSSLATLDL 811

Query: 787 SCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           S       KI  + F+        S   K++   L++K ++ I+
Sbjct: 812 SSVKSLVWKINAIYFLILNNLNDTSNISKNL-KELKEKTKADIL 854



 Score = 41.7 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q+    L  Q E    L    + S+  +  R+ E+ E  ++L    +K KL+    +   
Sbjct: 198 QKVSELLNKQKELEVKLNEK-QTSEKQLEKRINELVESNKELTDELSKLKLEKLNYEAEL 256

Query: 789 HKIA 792
           +   
Sbjct: 257 NNAN 260


>gi|156087929|ref|XP_001611371.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia
           bovis]
 gi|154798625|gb|EDO07803.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia
           bovis]
          Length = 1237

 Score = 45.5 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 59/557 (10%), Positives = 130/557 (23%), Gaps = 98/557 (17%)

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +     +G    +  +      +              G P D++ +         +    
Sbjct: 273 WTGKWAKGSPRWNNHILDGSGLDDGTLSQW---LQALGFPRDMINNSGPRNRWDAVIWDG 329

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   L          S   G    +  +        A    GY              V  
Sbjct: 330 FRGMLYLGFPDTGNGSPVHGGDYNDNTFRQPAGMNYA----GYIHTVDRGAFCSKATVFK 385

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +      T+     +               G   ++      ++     +          
Sbjct: 386 KDNGNGATSITDEQMH------------KCGALYKLYILSCAYFTGLQKKRSTQSNTPTT 433

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL-LHHA 596
              ++       A      +  + +        +    D               + +H  
Sbjct: 434 PRTIREIIYWLSALPYSEAYPKILQHSKEILKKVAPEKDGTKTLSFLQTGRTHPITVHEF 493

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
                   V+Q    +         +     ++ E        N       P  T  +  
Sbjct: 494 NLFAHFQAVTQYCPLVLIGIQGGIHSTKGTDSTKEPPIHSLYANTECRFTYP--TVSIQA 551

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            + +     AL    Y   +R         G        G  V S G I  + +      
Sbjct: 552 YNQVVHYIRALFYQLY--FLRKQCAVKVAMGGKWRECRYGDGVVSKGVISWMCLGCNPME 609

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
                R+E                        LK     V+ +++ +             
Sbjct: 610 HDRKCRVEG-----------------------LKKGLDGVINKLKAL------------- 633

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ--SGIIMLVGISKE- 833
                   +        +N +         KEL+  ++ L+  +     +++ +G ++E 
Sbjct: 634 --------EGEAENTGGINGV---------KELREGIEKLRDILGAIGDVVVQLGNAQER 676

Query: 834 ---KKASVLIVVTEDL--LDRFNAV----DLARLSAKVLGGG-GGGGRPHMAQSGG-PNG 882
               K  +   V E L  ++  N      D+ +   + +     G G+     +GG  + 
Sbjct: 677 LDTGKNDLD-GVKEALKKVEGVNGGNGFKDVLKEVLEEVKKKVTGLGK-----AGGLKDA 730

Query: 883 -NKADQAIAGVASFLKK 898
             KA  A+    + + K
Sbjct: 731 KEKAKNALEEAKAVVDK 747


>gi|229827166|ref|ZP_04453235.1| hypothetical protein GCWU000182_02551 [Abiotrophia defectiva ATCC
           49176]
 gi|229788784|gb|EEP24898.1| hypothetical protein GCWU000182_02551 [Abiotrophia defectiva ATCC
           49176]
          Length = 545

 Score = 45.5 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 16/102 (15%)

Query: 744 SLASFLKVSQGNVVG--RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF----M 797
           SL+ FL+    N++    ++   +  ++L+         LN   +  +KI DV      +
Sbjct: 261 SLSEFLETKSDNLMENDLIKNELKNRKELE-------ASLNRSAVKENKINDVKLSFDKV 313

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
           +      +   LK++   L    +   I LVG S   K+++ 
Sbjct: 314 NFRYKGANKDTLKNISFEL---HKGKAIALVGPSGGGKSTIA 352


>gi|255099823|ref|ZP_05328800.1| putative DNA mismatch repair protein [Clostridium difficile
           QCD-63q42]
 gi|255305708|ref|ZP_05349880.1| putative DNA mismatch repair protein [Clostridium difficile ATCC
           43255]
          Length = 792

 Score = 45.5 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 23/150 (15%)

Query: 730 RARSHLMGQDEKLKS-LASFLKVSQGNVVGR--VEEIWEEYRKLQLIHAKRKLQLNVED- 785
           RA+ ++  ++  L+  L +  K     V  R   E + EE  KL++ + ++  +L  +  
Sbjct: 507 RAKEYINTENIALEDVLQNVEKNRIKAVEDREEAERLKEEIEKLKVEYDEKLEKLVSQRD 566

Query: 786 --LSCHKIADVNFMSHIISEVD--SKELKSV------------MDALQKKIQSGIIMLVG 829
             +   K    + +     EVD   KEL+S+            ++ L+K++ S    +  
Sbjct: 567 KMIEKAKSEAFSIIRQAKEEVDIIIKELRSLEQERASKEKNRKIEELRKELTSS---MGS 623

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           +    K+ ++  V+   +      +  ++ 
Sbjct: 624 LQPTVKSMIVPKVSNKEIKDLKPGEEVKVI 653


>gi|259483106|tpe|CBF78206.1| TPA: alanyl-tRNA synthetase, putative (AFU_orthologue;
           AFUA_8G07110) [Aspergillus nidulans FGSC A4]
          Length = 283

 Score = 45.5 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 72/227 (31%), Gaps = 16/227 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E  +     V   QT FY + GGQ  DTG            D +    G F    ++++
Sbjct: 62  DEDRTEDIFAVTTQQTVFYPQGGGQPSDTGI------IAISFDGKILHFGRFAKVPLIKQ 115

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN----GSCITPDGLR 618
                   + L ID   R   S  H+A H+L  A+  +  +   +             L 
Sbjct: 116 PYFTAHQPVTLHIDAAKRNYHSRLHTAGHVLGLAMRLLSTTLGERKKVKANHFPREACLE 175

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           F+              +++  +  +   +   +                       RVRV
Sbjct: 176 FEGLLYNEHKPLIQAKVDEITDMDLDVRISWWSEEEVERRRDELDMVEGREVGGMGRVRV 235

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             +   D        CGGTHV ST     + I   S  + GI R+  
Sbjct: 236 AEIGDLDAN-----PCGGTHVVSTKRTGRIVIRKISR-QKGISRVSY 276


>gi|322704245|gb|EFY95842.1| threonyl/alanyl tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 330

 Score = 45.5 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 79/246 (32%), Gaps = 31/246 (12%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL- 565
           S     +V  +T F+ + GGQ  D G            D        F   A+    +  
Sbjct: 45  SDDDFVMVTSETIFHPQGGGQPSDEGFITWSPNGTTAADSPPDHTSSFHVKAVRIDAVHG 104

Query: 566 ------------------RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
                             +    +   +D + R   S  H+A H+L  A+ ++L + +  
Sbjct: 105 SQVLHLGSFPTPAAASQVQPGDQVTQVLDVEKRLLHSRLHTAGHVLGSAVRSLLETEIPG 164

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
                            K     + K  I+  V++ +A+++PV        D    G A 
Sbjct: 165 FDELKASHFPDSAGCEFKGAIEGKWKEPIQRRVDEYLARSMPVEVEFWTERDFCREGLAR 224

Query: 667 LLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           L+  +       D+ RVV +   D        CGGTHV +T       +   +    G  
Sbjct: 225 LIPDRRLLPPGEDKFRVVRIVGADVY-----PCGGTHVDTTDLCGETTVKKIAR-SKGTS 278

Query: 722 RIEAIT 727
           R+    
Sbjct: 279 RVSYTV 284


>gi|126698288|ref|YP_001087185.1| putative DNA mismatch repair protein [Clostridium difficile 630]
 gi|123363473|sp|Q189Q3|MUTS2_CLOD6 RecName: Full=MutS2 protein
 gi|115249725|emb|CAJ67542.1| DNA mismatch repair protein [Clostridium difficile]
          Length = 792

 Score = 45.5 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 23/150 (15%)

Query: 730 RARSHLMGQDEKLKS-LASFLKVSQGNVVGR--VEEIWEEYRKLQLIHAKRKLQLNVED- 785
           RA+ ++  ++  L+  L +  K     V  R   E + EE  KL++ + ++  +L  +  
Sbjct: 507 RAKEYINTENIALEDVLQNVEKNRIKAVEDREEAERLKEEIEKLKVEYDEKLEKLVSQRD 566

Query: 786 --LSCHKIADVNFMSHIISEVD--SKELKSV------------MDALQKKIQSGIIMLVG 829
             +   K    + +     EVD   KEL+S+            ++ L+K++ S    +  
Sbjct: 567 KMIEKAKSEAFSIIRQAKEEVDIIIKELRSLEQERASKEKNRKIEELRKELTSS---MGS 623

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           +    K+ ++  V+   +      +  ++ 
Sbjct: 624 LQPTVKSMIVPKVSNKEIKDLKPGEEVKVI 653


>gi|302683833|ref|XP_003031597.1| hypothetical protein SCHCODRAFT_108687 [Schizophyllum commune H4-8]
 gi|300105290|gb|EFI96694.1| hypothetical protein SCHCODRAFT_108687 [Schizophyllum commune H4-8]
          Length = 806

 Score = 45.1 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAIT--GQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
              E     +     +   +RR+EA     +  +  L  + ++L+ +A+ L+        
Sbjct: 327 RVNEEKRTMVRDMEGLVKEMRRVEAKLEGSKEEKQVLAKEIKQLQDVAADLRSQARETEE 386

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           R  E+ +  R+ +    + K      +    ++     +    ++  ++E++S+ + ++
Sbjct: 387 REHEMADALREKEKELLESKSDATKLEALVARLRQAASVVLEENDALAEEMRSMKEEVR 445


>gi|255072625|ref|XP_002499987.1| hypothetical protein MICPUN_56305 [Micromonas sp. RCC299]
 gi|226515249|gb|ACO61245.1| hypothetical protein MICPUN_56305 [Micromonas sp. RCC299]
          Length = 201

 Score = 45.1 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 792 ADVNFMSHIISEV----DSKELKSVMDALQKKIQSGIIMLVGISKE--KKASVLIVVTED 845
            ++  +   +  +    D ++ +      +K     I  L+    E     +++  V ED
Sbjct: 59  GNIKLLEAAMEGMNAVPDPEDPEE-----RKGCSGHIAKLIISENEKAGAIAMVAYVPED 113

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           + D+ NA++  +   +   GGG GG P 
Sbjct: 114 MKDKLNAIEWMKAVCETDLGGGVGGAPD 141


>gi|46581568|ref|YP_012376.1| alanyl-tRNA synthetase family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450991|gb|AAS97636.1| alanyl-tRNA synthetase family protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235211|gb|ADP88065.1| Threonyl/alanyl tRNA synthetase SAD [Desulfovibrio vulgaris RCH1]
          Length = 218

 Score = 45.1 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 28/231 (12%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           + + E V   V      +  D+T  +A +GGQ  D G   G  I   +         ++ 
Sbjct: 13  LTETEAVVTGVEND--VITLDRTVAFAFSGGQESDRGTIAGHAILKAVKGSPCDPLELYY 70

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
                          + + ID + RR+L   H A  L+   ++     H  + G+ I+PD
Sbjct: 71  TLPAGHGLT--PGSRVTVCIDGEARRRLVRLHFAAELVLELVNR-HYDHPEKTGAHISPD 127

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             R D      I+      + + ++ ++A +LP                        +  
Sbjct: 128 KARLDFAWQGNIS-VAFPMLHERLSALVAADLP----------------IESSFEDESTE 170

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           VR  S+E       +   CGGTH +STG +  + +  E +  +G  RI  +
Sbjct: 171 VRYWSIEGF-----ARVRCGGTHPASTGAVGRIRLRRE-NPGSGRERIVIL 215


>gi|284434738|gb|ADB85435.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 962

 Score = 45.1 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 691 SALCGGTHVSSTGEIML----LYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLK 743
                   V    E+        I + S+I   I +I A+ G+   +       ++E  K
Sbjct: 663 LEKVWWDQVERVDELKHPELVYSIFARSTISKAIEQI-AVVGEYHRQLLELRQEKEELCK 721

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
               +LK  +  +   ++   EE RKLQ        +L   + +  K      +   I++
Sbjct: 722 QAERWLKSDEKTLADSLDYQKEESRKLQEKVEFLLRKLKEANSATEK------VHERINK 775

Query: 804 VDSKELKSVMDALQKK 819
            +  +++ + + +Q K
Sbjct: 776 KE-DDIRKLQNEVQNK 790


>gi|190347839|gb|EDK40187.2| hypothetical protein PGUG_04285 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 400

 Score = 45.1 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 16/162 (9%)

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
             ++ G  H+   G I    I  E +    +R IE +  +     L   +  ++     L
Sbjct: 126 IRSVDGIFHMVR-GFIDDEIIHIEENKVDPLRDIEIVNDELILKDLEYLESAIEQTEKLL 184

Query: 750 KVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHI----ISE 803
           K    NV  +V+   +   K Q  L +AK+    N  D     +  VN ++      +  
Sbjct: 185 KKPHSNV-SKVQFALDTLLKAQDLLYNAKKISVENWSDEEIEVLNSVNLLTAKPMVYLLN 243

Query: 804 VDSKELKSVMDA--------LQKKIQSGIIMLVGISKEKKAS 837
           V   +L+S  +         +++      +++   S E K +
Sbjct: 244 VSENDLRSGTNEFQPGIEKWIRETCPKDKLLVFSASFESKIA 285


>gi|317477275|ref|ZP_07936512.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906587|gb|EFV28304.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 102

 Score = 45.1 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            +   T  ++K++E+ VN II Q+LPV T  + +E+A        L    ++ VRVV V 
Sbjct: 1   MTACPTEEQIKNLENTVNQIIMQHLPVTTEFITQEEAKGRFDLKRLPEDASETVRVVKVG 60

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLY-IVSESSIRAGIRRIEA 725
             D       LC GTHV++T EI     I  +        RI  
Sbjct: 61  DYDE-----CLCIGTHVANTSEIGTFKIISHDWDGENKRWRIRF 99


>gi|241767682|ref|ZP_04765314.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax delafieldii 2AN]
 gi|241361362|gb|EER57881.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax delafieldii 2AN]
          Length = 196

 Score = 45.1 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 8/160 (5%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   ID++ R ++   H+ +HLL H +  ++      NG  ITPD  R D   + P
Sbjct: 33  PGTAVTARIDWERRHRMMRLHTTSHLLCHVVPQLV------NGCSITPDYARLDFAMTDP 86

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYED 685
           +   +L +    +                 +       + ++   +   R+R + +  E 
Sbjct: 87  LDKEQLTAAIAALVAAAHPITVASISDAELDANPQLVKSMSVQPPRGTGRIRTIRIGGEG 146

Query: 686 GGV-HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                    CGGTHV+ST EI  + +       A  RR+ 
Sbjct: 147 LQPAIDLQPCGGTHVASTAEIGAVVVTRIEKKSAITRRVT 186


>gi|146415172|ref|XP_001483556.1| hypothetical protein PGUG_04285 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 400

 Score = 45.1 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 62/178 (34%), Gaps = 19/178 (10%)

Query: 677 RVVSVEYEDGGVHSSAL---CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           R  S     G    S +    G  H+   G I    I  E +    +R IE +  +    
Sbjct: 110 RDASSGKGMGNKFLSEIRLVDGIFHMVR-GFIDDEIIHIEENKVDPLRDIEIVNDELILK 168

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKI 791
            L   +  ++     LK    NV  +V+   +   K Q  L +AK+    N  D     +
Sbjct: 169 DLEYLESAIEQTEKLLKKPHSNV-SKVQFALDTLLKAQDLLYNAKKISVENWSDEEIEVL 227

Query: 792 ADVNFMSHI----ISEVDSKELKSVMDA--------LQKKIQSGIIMLVGISKEKKAS 837
             VN ++      +  V   +L+S  +         +++      +++   S E K +
Sbjct: 228 NSVNLLTAKPMVYLLNVSENDLRSGTNEFQPGIEKWIRETCPKDKLLVFSASFESKIA 285


>gi|85097119|ref|XP_960385.1| hypothetical protein NCU04826 [Neurospora crassa OR74A]
 gi|28921875|gb|EAA31149.1| predicted protein [Neurospora crassa OR74A]
          Length = 1422

 Score = 45.1 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 18/131 (13%)

Query: 732 RSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRK--------LQ 780
              L  + +  +++ + LK    S   +  R+E++ EE    +   +K K        LQ
Sbjct: 605 IDELTEETKSQEAIIAKLKEETASAEELQKRIEQLTEENTTYEATLSKLKEESSAAEDLQ 664

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
             +++L          ++ +        EL+  +D L   ++     +  + +E      
Sbjct: 665 KRIQELEAEAKDKEATIAQLKDNTTGSDELQKRIDELGNDLKDKEATIAQLKEE------ 718

Query: 840 IVVTEDLLDRF 850
           +   E+L  R 
Sbjct: 719 LAAAEELQKRI 729



 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           + L  ++  +  L   L  +   +  R+EE+ EE +  +   AK + +    D
Sbjct: 703 NDLKDKEATIAQLKEEL-AAAEELQKRIEELTEEAKTKEATIAKLQEEHKAAD 754



 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 702 TGEIMLLYIVSESSIRAGI-RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           T E  L  +  ESS    + +RI     Q   +    ++  +  L          +  R+
Sbjct: 645 TYEATLSKLKEESSAAEDLQKRI-----QELEAEAKDKEATIAQLKDN-TTGSDELQKRI 698

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           +E+  + +  +   A+ K +L   +    +I +
Sbjct: 699 DELGNDLKDKEATIAQLKEELAAAEELQKRIEE 731


>gi|221108256|ref|XP_002169771.1| PREDICTED: similar to viral A-type inclusion protein [Hydra
           magnipapillata]
          Length = 2659

 Score = 45.1 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 13/107 (12%)

Query: 722 RIEAITGQRARSHLMGQ---DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           R+   T    + ++  +   D  L  +   LK S   +V +V  + +E ++++  +   K
Sbjct: 358 RVTFETNDSFKENIRKEFNFDTALTGIKESLKKSHYELVDKVAALHKELKEMKEENRTLK 417

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV-----MDALQKKI 820
            Q          I         ++E +SK L+++     +D ++  +
Sbjct: 418 KQKEFSTKESRLI----VRFEKLNEENSK-LRNLIGCQNVDEVKSAL 459


>gi|308805795|ref|XP_003080209.1| unnamed protein product [Ostreococcus tauri]
 gi|116058669|emb|CAL54376.1| unnamed protein product [Ostreococcus tauri]
          Length = 207

 Score = 45.1 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 32/161 (19%)

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQKKIQSGI- 824
            +   AK   +   + +     AD++ ++   + +    DS EL  V       I     
Sbjct: 24  AEKKVAKALKEGGKKGVEIEGAADMSGLTCFCTRMQEAGDSVELLEVSMEGMNAIPDPSN 83

Query: 825 -------------IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
                        +++    + KK +++  V E L D+ NA +  +       GGG GG 
Sbjct: 84  EEERKGCSGHISKLIISSNDETKKIAMVAYVAEQLKDQLNATEWMKAVCDTDLGGGVGGA 143

Query: 872 P------HMA-------QSGGPNGNKA-DQAIAGVASFLKK 898
           P        A        + G    K  D A++    +L++
Sbjct: 144 PAESSTATWATCQVSEDTANGKFYLKFKDNALSAAIGYLRE 184


>gi|150401269|ref|YP_001325035.1| hypothetical protein Maeo_0841 [Methanococcus aeolicus Nankai-3]
 gi|166235100|sp|A6UVA1|Y841_META3 RecName: Full=UPF0235 protein Maeo_0841
 gi|150013972|gb|ABR56423.1| protein of unknown function DUF167 [Methanococcus aeolicus
           Nankai-3]
          Length = 101

 Score = 44.7 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDAL 816
           + EI  E +    I    ++  N +     +I +      +      VD K  K +    
Sbjct: 2   INEIIRESKDKNGILIDVEISSNAKKNEIGEINEWRKRLIIKIKALPVDGKANKEIAKFF 61

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRF 850
           +K     II++ G++  +K   +I  T+D ++D+ 
Sbjct: 62  KKTFGKDIIIVSGLTSSQKTICVIGATKDEIIDKI 96


>gi|313216052|emb|CBY37434.1| unnamed protein product [Oikopleura dioica]
          Length = 2071

 Score = 44.7 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 54/491 (10%), Positives = 130/491 (26%), Gaps = 31/491 (6%)

Query: 348  EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +    +E+E        G             +E+ +      L           Q     
Sbjct: 1287 QRIFSAEEEISLLRDKSGGATKALSKEKKRLEEVEDSLQQALLAGKQ----RETQLNSEI 1342

Query: 408  RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
                        +  E  R   +           E+   SL  +   T    Y  L+   
Sbjct: 1343 ESKEEFIHKLERKNAEMVRRLHQFDLEKDEMIGREERLNSLLSEGNET----YGALQNEM 1398

Query: 468  FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-----IVEEAVSGQKVEVVFDQ----- 517
               + +     +   +        + ++    E     ++E   S +++    D      
Sbjct: 1399 ESLKSQYERRLRTCDETKRENEGTIHSLEVDIENMRARLLESEKSTERLRADVDNKGNLE 1458

Query: 518  --TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
               PF      ++          I  +    + K          ++  +   + +L    
Sbjct: 1459 KINPFKFPTSSKITFLTNYKDREIIRERQQHKLKDAEANEKIGGLQHDLKIQQKTLQAVT 1518

Query: 576  DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
                 +    +      +      + G     N      +    D + S      E+   
Sbjct: 1519 MDLESQAAEESARLEKQIDILKLEVQGKDSELNKVRHEKERDILDQSASDLQGELEVVVA 1578

Query: 636  EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
            + +       +L V  R     D   +   + +     +R ++ S+  E      S    
Sbjct: 1579 QLDQTRQEKNSLTVRLREQEVIDDELNSNLSEVQQMKQEREKLKSIVNEKSKDIDSLTIQ 1638

Query: 696  GTHVS-STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
                     ++           +    RIE      AR  +     +   L S +     
Sbjct: 1639 LQRSDKRVEQVESEMKQKSEESKEAAERIE-----DARKMIQDLRREKDELVSMIGQRSS 1693

Query: 755  NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM---SHIISEVDSKELKS 811
            +   ++E++ EE R LQ      + +  +E  +  + +++  +        E+  ++LK 
Sbjct: 1694 D-QKKIEKLREENRDLQKKLDDVRKESRLEAKTLSEASNIKQVLREKQHYQELS-EDLKV 1751

Query: 812  VMDALQKKIQS 822
             +  L+ ++  
Sbjct: 1752 DIQKLKNQMNE 1762


>gi|154419561|ref|XP_001582797.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121917034|gb|EAY21811.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 1553

 Score = 44.7 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q+ +      +  L++       S   +  ++ ++ +E R L     + +  L  ++   
Sbjct: 869 QQVQEEKANLESDLENERQNNSSSNAELSDKLSKLQQENRDLVNQINQLQNDLKQKESEI 928

Query: 789 HKI-ADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
            K+ +D++ ++++I +++    +++   D L KK+ + +        E+K  ++    +D
Sbjct: 929 QKVSSDLDNLNNVIQDLESQMNDMQGKNDELSKKLSNLV-----DDNERKDKLI----DD 979

Query: 846 LLDRFN 851
           L  + +
Sbjct: 980 LNSQLS 985



 Score = 41.3 bits (95), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
            L  +++ LK   S LK         ++++ ++ R L+    +  + L+ E      + + 
Sbjct: 1099 LKKENQALKEEISKLKAENDEHNSTIDQLNDDKRDLEEQLKELNITLDEEKSKSFSLNE- 1157

Query: 795  NFMSHIISEVDSKELKSVMDALQKKIQSGI 824
                +   E+ +K+   + D L+ +++S +
Sbjct: 1158 ----NASEELKNKD--DINDGLKSQLKSQV 1181


>gi|70732609|ref|YP_262372.1| ClpB protein [Pseudomonas fluorescens Pf-5]
 gi|68346908|gb|AAY94514.1| ClpB protein PA4542 [Pseudomonas fluorescens Pf-5]
          Length = 854

 Score = 44.7 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 8/198 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  +  LK       + R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVESQALKKEDDEAAIKRLEKLQEEIVRLE 452

Query: 772 LIHAKRKLQLNVEDLSCH 789
             +A  +     E     
Sbjct: 453 REYADLEEVWTSEKAEVQ 470


>gi|326478631|gb|EGE02641.1| chromosomes protein 4 structural maintenance [Trichophyton equinum
            CBS 127.97]
          Length = 1431

 Score = 44.7 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              A+ +L     ++K L+   K S  +   R   + +  + L+    K + ++   +   
Sbjct: 966  DSAKRNLADTQRRVKELSEEHKPSAAD-EKREASLEKTIKALEKEIEKLRSEMTGVEEEI 1024

Query: 789  H----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                 KI +V  +     +     LK  +  L  ++ +  +     SK +K  V
Sbjct: 1025 QALQDKIMEVGGVRLRGQKAKVDGLKEQISLLTDEVSNAEV---SKSKNEKLRV 1075


>gi|326470448|gb|EGD94457.1| nuclear condensin complex subunit Smc4 [Trichophyton tonsurans CBS
            112818]
          Length = 1431

 Score = 44.7 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              A+ +L     ++K L+   K S  +   R   + +  + L+    K + ++   +   
Sbjct: 966  DSAKRNLADTQRRVKELSEEHKPSAAD-EKREASLEKTIKALEKEIEKLRSEMTGVEEEI 1024

Query: 789  H----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                 KI +V  +     +     LK  +  L  ++ +  +     SK +K  V
Sbjct: 1025 QALQDKIMEVGGVRLRGQKAKVDGLKEQISLLTDEVSNAEV---SKSKNEKLRV 1075


>gi|306825471|ref|ZP_07458811.1| MazF family toxin-antitoxin system [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432409|gb|EFM35385.1| MazF family toxin-antitoxin system [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 303

 Score = 44.7 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 87/254 (34%), Gaps = 27/254 (10%)

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL--LG 669
           +  +    ++         EL+     +  +  +      +I    +             
Sbjct: 7   MGSNRTNEEIAVYTATIIQELEDYLHLLQRMDDEGNKRSDKIAQWIENWVKYLKIEQGFN 66

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTH-----------VSSTGEIMLLYIVSESSIRA 718
           ++    ++  S+ Y D G +     GG H            +    ++ L  V E++  +
Sbjct: 67  SRSIQALKRGSIVYADFGFNVGREYGGLHYAIVLNKTDARSNHLLHVLPLTSVKETTDIS 126

Query: 719 GIRRIEAITGQRARSHLMGQDE----KLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQ 771
            ++  + + G      L  +      +L  L          +  +   VE + E+ +K  
Sbjct: 127 NLKYFQFLIGDEVFQLLKNEANRKITELTELYDRFSKKDDELQEKVAMVESLIEDNKKT- 185

Query: 772 LIHAKRKLQLNVEDLSCHKI----ADVNFMSHIISEV--DSKELKSVMDALQKKIQSGII 825
               K     +++D S  +I     ++NF S    ++  ++KE   ++  L++K++    
Sbjct: 186 FEILKNIPSSDIDDSSIEQILTINKNINFASEQADKIRQEAKENAILLAELKEKLEYANK 245

Query: 826 MLVGISKEKKASVL 839
            ++      K S++
Sbjct: 246 FILKTQNMNKDSIV 259


>gi|302658026|ref|XP_003020723.1| hypothetical protein TRV_05174 [Trichophyton verrucosum HKI 0517]
 gi|291184581|gb|EFE40105.1| hypothetical protein TRV_05174 [Trichophyton verrucosum HKI 0517]
          Length = 1431

 Score = 44.7 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              A+ +L     ++K L+   K S  +   R   + +  + L+    K + ++   +   
Sbjct: 966  DSAKRNLADTQRRVKELSEEHKPSAAD-EKREASLEKTIKALEKEIEKLRSEMTGVEEEI 1024

Query: 789  H----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                 KI +V  +     +     LK  +  L  ++ +  +     SK +K  V
Sbjct: 1025 QALQDKIMEVGGVRLRGQKAKVDGLKEQISLLTDEVSNAEV---SKSKNEKLRV 1075


>gi|302498499|ref|XP_003011247.1| hypothetical protein ARB_02529 [Arthroderma benhamiae CBS 112371]
 gi|291174796|gb|EFE30607.1| hypothetical protein ARB_02529 [Arthroderma benhamiae CBS 112371]
          Length = 1431

 Score = 44.7 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              A+ +L     ++K L+   K S  +   R   + +  + L+    K + ++   +   
Sbjct: 966  DSAKRNLADTQRRVKELSEEHKPSAAD-EKREASLEKTIKALEKEIEKLRSEMTGVEEEI 1024

Query: 789  H----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                 KI +V  +     +     LK  +  L  ++ +  +     SK +K  V
Sbjct: 1025 QALQDKIMEVGGVRLRGQKAKVDGLKEQISLLTDEVSNAEV---SKSKNEKLRV 1075


>gi|312958896|ref|ZP_07773415.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Pseudomonas
           fluorescens WH6]
 gi|311286666|gb|EFQ65228.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Pseudomonas
           fluorescens WH6]
          Length = 854

 Score = 44.7 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 60/198 (30%), Gaps = 8/198 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VEEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  +  LK  + +    R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLDRRLIQLKVESQALKKEEDDAAKKRLEKLQEEILRLE 452

Query: 772 LIHAKRKLQLNVEDLSCH 789
             ++  +     E     
Sbjct: 453 REYSDLEEIWTSEKAEVQ 470


>gi|327268696|ref|XP_003219132.1| PREDICTED: protein CIP2A homolog [Anolis carolinensis]
          Length = 909

 Score = 44.7 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L  Q E +K L   LK        ++ E  E+ ++L      +  +++       KI + 
Sbjct: 759 LNKQLENIKKLNESLKQQNDKTAAQLMETEEQRKELHKQLQDKDAKISSLQQKA-KIQEE 817

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSG 823
              +    + D +E    +D L+K++   
Sbjct: 818 KLKARQKEKADMEE---TIDILRKELSKT 843


>gi|159489562|ref|XP_001702766.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280788|gb|EDP06545.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 579

 Score = 44.7 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 77/243 (31%), Gaps = 25/243 (10%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
                 +  A  +         G  V+            F      P+T  +LK I+  +
Sbjct: 11  NLLRIRHSCAHIMAMAVQRLFKGVQVTVGPWTDRGFFYDFAWPADSPLTEKDLKKIKKEM 70

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVSVEYEDGGVHSSALCGGT 697
             I+  NLP V   ++  +A A       G  Y   +   ++             LC G 
Sbjct: 71  AKIMKANLPFVKEEVSPAEAEAR--IRAQGEPYKLEILQSILQPAGPKPVAPWWDLCAGP 128

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV  TG+I    +  E+   A   R     G  A + L                +   + 
Sbjct: 129 HVERTGDINPDAVELENVTGA-YWR-----GDEANAMLTRVYGTAWE-------TPEQLA 175

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                    +++L+   AKR  +    +L+   I + +    +        ++ ++++  
Sbjct: 176 A--------FKQLKEEAAKRDHRKLGAELNLFSIQESSGGGLVYWHPPGAMVRHLIESFW 227

Query: 818 KKI 820
           K++
Sbjct: 228 KEL 230


>gi|154418773|ref|XP_001582404.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121916639|gb|EAY21418.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2120

 Score = 44.7 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 15/102 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--------------RKLQLIHAKRKLQ 780
            L  + E L+     L+     +   +E++ +E               +KLQ  +   K +
Sbjct: 1664 LQNEYETLQEENDKLQDKIEELQSTIEKLQQENEELKNNKPIYSPSPKKLQNENNSLKQE 1723

Query: 781  LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     ++ +       I      +L+   ++L+++I++
Sbjct: 1724 NEKLQEEIEELQNT-IDKLQIENKSPNKLQQENNSLKQEIEN 1764



 Score = 42.8 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-------------RKLQLIHAKRKLQL 781
            L  ++E LK     L+     +   VE++ +E              +KLQ  +   K   
Sbjct: 973  LQNENESLKQENEKLQEQIEELQNTVEKLQQENDLLKNNKSVSPSPKKLQQENDLLKNNK 1032

Query: 782  NVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQS 822
            +V         + N +     ++  + +EL++ +D LQ   +S
Sbjct: 1033 SVSPSPKKLQNENNSLKQENEKLQEEIEELQNTIDKLQNSNKS 1075



 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---KLQLIHAKRKLQLNVEDLSCH 789
              L  ++  LK     L+     +   ++++  E +   KLQ  +   K ++        
Sbjct: 1711 KKLQNENNSLKQENEKLQEEIEELQNTIDKLQIENKSPNKLQQENNSLKQEIENLKEEIE 1770

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +       S    + ++  LK   + LQ++I  
Sbjct: 1771 QNNKSKSYSPKKLQQENNSLKQENEKLQEEIDE 1803



 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---KLQLIHAKRKLQLNVEDLSCH 789
              L  ++  LK     L+     +   ++++  E +   KLQ  +   K ++        
Sbjct: 1860 KKLQNENNSLKQENEKLQEEIEELQNTIDKLQIENKSPNKLQQENNSLKQEIENLKEEIE 1919

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +       S    + ++  LK   + LQ++I  
Sbjct: 1920 QNNKSKSYSPKKLQQENNSLKQENEKLQEEIDE 1952



 Score = 40.9 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 740  EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
             KL++    LK     +   +EE+     KLQ  +   K   +V         + N +  
Sbjct: 1386 NKLQNENESLKQENEKLQEEIEELQNTVEKLQQENDLLKNNKSVSPSPKKLQNENNSLKQ 1445

Query: 800  IISEV--DSKELKSVMDALQKKIQS 822
               ++  + +EL++ +D LQ   +S
Sbjct: 1446 ENEKLQEEIEELQNTIDKLQNSNKS 1470



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---KLQLIHAKRKLQLNVEDLSCH 789
             L  ++  LK     L+     +   ++++    +   KLQ  +   K ++        
Sbjct: 901 KKLQNENNSLKQENEKLQEQIEELQNTIDKLQNSNKSPNKLQQENNSLKQEIENLKEEIE 960

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +       S    + +++ LK   + LQ++I+ 
Sbjct: 961 QNNKSKSYSPNKLQNENESLKQENEKLQEQIEE 993



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 15/102 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--------------RKLQLIHAKRKLQ 780
            L  + E L+     L+     +   VE++ +E               +KLQ  +   K +
Sbjct: 1269 LQNEYETLQEENDKLQDEIEELQSTVEKLQQENEELKNNKPIYSPSPKKLQNENNSLKQE 1328

Query: 781  LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     ++ +        S     +L+   ++L+++I++
Sbjct: 1329 NEKLQEEIEELQNT-IDKLQNSNKSPNKLQQENNSLKQEIEN 1369



 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---KLQLIHAKRKLQLNVEDLSCH 789
              L  ++  LK     L+     +   ++++    +   KLQ  +   K ++        
Sbjct: 1316 KKLQNENNSLKQENEKLQEEIEELQNTIDKLQNSNKSPNKLQQENNSLKQEIENLKEEIE 1375

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +       S    + +++ LK   + LQ++I+ 
Sbjct: 1376 QNNKSKSYSPNKLQNENESLKQENEKLQEEIEE 1408



 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY---RKLQL 772
           ++    R+ A+    +   +M Q E  ++ ++ LK     +  ++EE+ +     +KLQ 
Sbjct: 767 LKKENERLNAMLDDSSMQIIMLQQEIDENKSNSLKQENEKLQEQIEELQKHSPSPKKLQQ 826

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +   K +         ++   N +  + +E + + L+   D LQ +I+ 
Sbjct: 827 ENNSLKQENEKLQEEIEELQ--NTVDKLQNENNLQSLQEENDKLQDEIEE 874



 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 736  MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--------------RKLQLIHAKRKLQL 781
                + L+     L+     +   VE++ +E               +KLQ  +   K + 
Sbjct: 1814 ENNLQSLQEENDKLQDEIEELQSTVEKLQQENEELKNNKPIYSPSPKKLQNENNSLKQEN 1873

Query: 782  NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                    ++ +       I      +L+   ++L+++I++
Sbjct: 1874 EKLQEEIEELQNT-IDKLQIENKSPNKLQQENNSLKQEIEN 1913



 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 736  MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--------------RKLQLIHAKRKLQL 781
                + L+     L+     +   VE++ +E               +KLQ  +   K + 
Sbjct: 1963 ENNLQSLQEENDKLQDEIEELQSTVEKLQQENEELKNNKPIYSPSPKKLQNENNSLKQEN 2022

Query: 782  NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                    ++ +       I      +L+   ++L+++I++
Sbjct: 2023 EKLQEEIEELQNT-IDKLQIENKSPNKLQQENNSLKQEIEN 2062



 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---KLQLIHAKRKLQLNVEDLSCH 789
              L  ++  LK     L+     +   ++++  E +   KLQ  +   K ++        
Sbjct: 2009 KKLQNENNSLKQENEKLQEEIEELQNTIDKLQIENKSPNKLQQENNSLKQEIENLKEEIE 2068

Query: 790  KIADVN 795
            +     
Sbjct: 2069 QNNKSK 2074



 Score = 38.6 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L    EKL+     LK ++       +++  E   L+  + K + Q+     +  K+
Sbjct: 872 IEELQSTVEKLQQENEELKNNKPIYSPSPKKLQNENNSLKQENEKLQEQIEELQNTIDKL 931

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + N   + + + ++  LK  ++ L+++I+
Sbjct: 932 QNSNKSPNKLQQ-ENNSLKQEIENLKEEIE 960



 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 740  EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMS 798
             KL++    L+     +  ++EE+     KLQ  + + K    +   S  K+  + N + 
Sbjct: 1662 NKLQNEYETLQEENDKLQDKIEELQSTIEKLQQENEELKNNKPIYSPSPKKLQNENNSLK 1721

Query: 799  HIISEV--DSKELKSVMDALQKKIQS 822
                ++  + +EL++ +D LQ + +S
Sbjct: 1722 QENEKLQEEIEELQNTIDKLQIENKS 1747



 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
               L    EKL+     LK ++       +++  E   L+  + K + ++     +  K+
Sbjct: 1287 IEELQSTVEKLQQENEELKNNKPIYSPSPKKLQNENNSLKQENEKLQEEIEELQNTIDKL 1346

Query: 792  ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             + N   + + + ++  LK  ++ L+++I+
Sbjct: 1347 QNSNKSPNKLQQ-ENNSLKQEIENLKEEIE 1375



 Score = 37.4 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 740  EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMS 798
             KL++    L+     +   +EE+     KLQ  + + K    +   S  K+  + N + 
Sbjct: 1267 NKLQNEYETLQEENDKLQDEIEELQSTVEKLQQENEELKNNKPIYSPSPKKLQNENNSLK 1326

Query: 799  HIISEV--DSKELKSVMDALQKKIQS 822
                ++  + +EL++ +D LQ   +S
Sbjct: 1327 QENEKLQEEIEELQNTIDKLQNSNKS 1352


>gi|189237841|ref|XP_974666.2| PREDICTED: similar to rho-associated protein kinase 1 [Tribolium
            castaneum]
          Length = 2513

 Score = 44.7 bits (104), Expect = 0.078,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---QLIHAKRK 778
            R E  + +   + L  ++ +LK +   L   + ++  +++++ EE+ K         K K
Sbjct: 2069 RSEVNSKEVVINSLKDREMELKKMNEHLSKEREDINRQLKQLQEEFSKKSGNNEEIDKLK 2128

Query: 779  LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             +L  E L   +      ++ +   ++ K+L+      + KI + 
Sbjct: 2129 SKLQTESLLKQQA-----VNKLHEVLNRKDLRET--KGKSKISNA 2166


>gi|255305969|ref|ZP_05350141.1| exonuclease subunit C [Clostridium difficile ATCC 43255]
          Length = 1175

 Score = 44.7 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 728 GQRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G++ +     Q + LK L S L         V  ++ +   E + L+        + N  
Sbjct: 182 GEKVKKRKNIQLQNLKDLKSKLSQYDGITEEVYNKINQELIELKNLEKD------KNNAL 235

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQK-KIQSGIIMLVGISKEKKASVLIVVT 843
           DL+     +   +     +++  EL+     L+  +I+  I ++   S  KK    I   
Sbjct: 236 DLAQKSYEESKTVYEEQLKLEKNELRKNELDLKNSEIKEKIALVENDSNAKKVDPYISSV 295

Query: 844 EDLLDRFN 851
           ++L  + +
Sbjct: 296 QNLEKKID 303


>gi|154416763|ref|XP_001581403.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121915630|gb|EAY20417.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 4263

 Score = 44.4 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 9/99 (9%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC---- 788
              L    ++LK     L   +       E++  E +K Q      +  L  +D       
Sbjct: 2854 EQLKETQDQLKQTQETLATKEKEFAKSAEDLNNELKKKQQAIDDLQNNLKQKDAELTDTK 2913

Query: 789  ----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
                 K  + N +       +   L+  ++ L+ K+ + 
Sbjct: 2914 QKLEAKTNEFNDLKQKAEN-EIASLRKEIEQLKAKLANT 2951


>gi|145353213|ref|XP_001420915.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581151|gb|ABO99208.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 269

 Score = 44.4 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 80/235 (34%), Gaps = 16/235 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV-QKKAEGIFVHHAIVERGIL 565
                E+    T  +   GGQ  D+G  +G   R    D   ++ E   V HA   +   
Sbjct: 38  DDGGHEMTLASTIAHPAGGGQPSDSGRVVGANGRAWAFDAATRRRETGEVAHAGRTKPPF 97

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLH-HALSTILGSHVSQNGSCITPDGLRFDVTHS 624
               +  +TID   R   +  HSA H L    +   L          +    L +     
Sbjct: 98  EVGDACRVTIDGAKRVLHARIHSAGHALDVAMIRAGLPPTTLTPTKGVHEPALAYVEYKG 157

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTR-------IMNREDAIA-SGAAALLGTKYNDRV 676
           K     EL      +  + A+   ++          M  ++A A  G         +   
Sbjct: 158 KVDPEHELADANALMARLNAEMAKLIAEDGASAAAEMTYDEAKAACGGELPAFIAPDMTP 217

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI-EAITGQR 730
           R+V++  +  G      CGGTHV+   EI    +     ++ G+ R+  AI G  
Sbjct: 218 RIVTIVPDTPG----CPCGGTHVARMSEIQDFKMTGV-RVKKGVTRLSYAIPGMA 267


>gi|297586943|ref|ZP_06945588.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
 gi|297574924|gb|EFH93643.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
          Length = 2706

 Score = 44.4 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 18/172 (10%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
              +    E LK+    L   +   V + + + EE  K     A  K +   +D       
Sbjct: 2155 DDINKAKEALKAAEDALNGKEAQAVDK-KALQEEVAKKDDTKASDKYKNADQDKKDAYDK 2213

Query: 793  DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
             +     ++   D K  +  +D  +K ++     L   ++  KA++   V ++  D    
Sbjct: 2214 ALEDAKKVLE--DPKATQDEVDKAKKALKDAEDALDISAEVDKAALKAEVDKNKDDAITG 2271

Query: 853  VDLARLSAKVLGGGGGGGRPHM-------AQSGGPNGNKADQAIAGVASFLK 897
             D  + +A+         +          AQ    N +    A+      LK
Sbjct: 2272 SDKYKNAAQD--------KKDAYDKALEEAQKVLDNKDATQDAVNKAKDALK 2315


>gi|145529770|ref|XP_001450668.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418290|emb|CAK83271.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1565

 Score = 44.4 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK 790
           L   ++++ +L + L+  Q  +  ++    ++ +  ++L+      K  L +++D +   
Sbjct: 683 LAKAEQQIDTLNNQLQNKQQELDNQIVLNAKLQDRIKELESELLNLKKTLQSLQDQNTSL 742

Query: 791 IADVNFMSHII------SEVDSKELKSVMDALQKKI 820
             D +     +       + + K L+ + D  ++K 
Sbjct: 743 KNDHHLQLQELREEILRKQEEIKALQKLADQYKEKY 778


>gi|145491423|ref|XP_001431711.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398816|emb|CAK64313.1| unnamed protein product [Paramecium tetraurelia]
          Length = 774

 Score = 44.4 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 733 SHLMGQDEKL------KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             L    E+L      K +A  LK     +   V+++ EE  KLQ  +   K +LN    
Sbjct: 365 KDLQNCLEELDSADGQKDVAEQLKDDNEKLNQEVDQLHEENDKLQNENEDLKNRLNDLLR 424

Query: 787 SCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQS 822
                   N +  + ++++ K  ELK   + L++    
Sbjct: 425 QIQDKD--NKLKDLQTDLNKKNQELKDFSNKLKEANDK 460



 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---KLQLIHAKRKLQLNVEDLSCH 789
             L  + + L+ L      S  +++  +E++ ++ +   +L+    +++ + + +     
Sbjct: 205 DILAKKLKDLEKLQKQFGGSPEDLLKELEKLRKKAKEADELKKELDRQQRENDKQRGDLG 264

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            + D+   S  +   +  +L   ++ L+ K++ 
Sbjct: 265 MLDDLQKTSQDLQFANG-QLNQQLNDLRNKLKD 296



 Score = 38.2 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  +++KL++    LK    +++ ++++   + + LQ    K+  +L        + 
Sbjct: 398 VDQLHEENDKLQNENEDLKNRLNDLLRQIQDKDNKLKDLQTDLNKKNQELKDFSNKLKEA 457

Query: 792 AD-VNFMSHII----SEVDSK 807
            D + ++ +       ++D K
Sbjct: 458 NDKIQWIKNEFGLTDDDLDPK 478


>gi|229588328|ref|YP_002870447.1| chaperone [Pseudomonas fluorescens SBW25]
 gi|229360194|emb|CAY47051.1| chaperone [Pseudomonas fluorescens SBW25]
          Length = 854

 Score = 44.4 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 60/198 (30%), Gaps = 8/198 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VEEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  +  LK  + +    R+E++ EE  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLDRRLIQLKVESQALKKEEDDAAKKRLEKLQEEIVRLE 452

Query: 772 LIHAKRKLQLNVEDLSCH 789
             ++  +     E     
Sbjct: 453 REYSDLEEIWTSEKAEVQ 470


>gi|73961225|ref|XP_537167.2| PREDICTED: similar to Nucleoprotein TPR [Canis familiaris]
          Length = 2427

 Score = 44.4 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 256 HNQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRMEEQMSGLKT 310

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  N+   VEE+  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 311 SNENLQKHVEELLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 368

Query: 810 KSVMDALQKKIQSG 823
              +D L K ++  
Sbjct: 369 TRAVDELHKLLKEA 382


>gi|302338824|ref|YP_003804030.1| threonyl/alanyl tRNA synthetase SAD [Spirochaeta smaragdinae DSM
           11293]
 gi|301636009|gb|ADK81436.1| Threonyl/alanyl tRNA synthetase SAD [Spirochaeta smaragdinae DSM
           11293]
          Length = 216

 Score = 44.4 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 76/225 (33%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E           +V  D++ F+A +GGQ  D G   G  +     D     + I     +
Sbjct: 16  EADATVTEIDGSKVTLDRSIFFAFSGGQESDYGTIGGLSV----HDACIDGKEIIYTLEM 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +     +   S+++ ID++ R  L   H A  ++                  +    +  
Sbjct: 72  IP--SFKKGDSVIIRIDWERRYTLMRLHMAAEIV-----------------LVLVMKMFP 112

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            +       S +   ++   +  + Q LP + +      A      +    K   R R  
Sbjct: 113 GIEKIGAHISEKKSRLDFVADSALRQTLPEIEKQALALVAEDVPIISDFSDKTAAR-RFW 171

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            +         S  CGGTH+  TGEI  L +    +I  G  RIE
Sbjct: 172 RIAGF-----GSLPCGGTHLKRTGEIGPLQLGR-KNIGKGKERIE 210


>gi|118092960|ref|XP_001232771.1| PREDICTED: similar to CTCL tumor antigen se20-9 isoform 1 [Gallus
           gallus]
          Length = 957

 Score = 44.4 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V  +VE+     ++L+    KRK +   +    
Sbjct: 624 DEAKRIKAEQEKELSKFQNPLKNKKKEVRDKVEKAP---KELRKELLKRKKEELAQSQHA 680

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            +     F+     E+D+  LK ++   + ++
Sbjct: 681 QEQE---FVQKQQQELDA-SLKKIIQQQKTEL 708


>gi|219118712|ref|XP_002180123.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408380|gb|EEC48314.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 277

 Score = 44.4 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 95/256 (37%), Gaps = 21/256 (8%)

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIR 540
           +     ++ V ++       +E+V+   + +  D+T  +A+ GGQ  D G       G+ 
Sbjct: 24  NWLTECTAKVLSVSAHNPGEDESVAP--LAICLDRTVMHAQGGGQPTDVGRLEITATGVS 81

Query: 541 LQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLH-HAL 597
           + ++ V    E     H     G    R   ++ + ++   RR LS  H+A H++     
Sbjct: 82  VDVSKVLIDRETGVATHFGTLSGKTPPRVGDAVTVKLNVSQRRILSECHTAGHVVDSAMA 141

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
                   ++    +    + +  +       + L+ +++    ++ +       I+++E
Sbjct: 142 RCGKLMEPTKAYHFLDGPYVEYKGSVPIEERDSVLQELQEAFCQLVDEGFDTKIDILSKE 201

Query: 658 DAIASGAAAL-------LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           +A                  K   ++RVV+V            CGGTHV ST E+     
Sbjct: 202 EADELCNRQAQNFDVNLFADKRTQQIRVVTVAGF------PCPCGGTHVRSTTELKQGRW 255

Query: 711 VSES-SIRAGIRRIEA 725
                  + G+ R++ 
Sbjct: 256 GITGLKSKKGVVRVKY 271


>gi|171684143|ref|XP_001907013.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942032|emb|CAP67684.1| unnamed protein product [Podospora anserina S mat+]
          Length = 290

 Score = 44.4 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 77/235 (32%), Gaps = 25/235 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHAIV----- 560
             + F  T F+ + GGQ  D G             +             +H         
Sbjct: 49  FVLTFPSTIFHPQGGGQPSDEGHITLTSPPSVAFSVISARHSITNPSQVLHLGFFAPSVP 108

Query: 561 ---ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              E+ +      +  TI+   R   S  H+A H+L  A+  +L S +            
Sbjct: 109 PPDEQPLFTPGDQITQTINANLRNYHSRLHTAGHVLGSAVRHLLESQIEDFDELKASHFP 168

Query: 618 RFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
                  + +  ++ K  I++ VN+++A  +PV     + ED    G   L+    N   
Sbjct: 169 DSAACEFRGLIDSKWKEPIQEKVNELLAAKMPVEVEWWDEEDFRREGLERLIPRGKNGE- 227

Query: 677 RVVSVEYEDGGVHSSA--------LCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +V  E  DGG              CGGTHV  T     + +        G  R+
Sbjct: 228 -LVKPENTDGGRWRVVRIVGAEVYPCGGTHVERTDLCGEVRVRKVGR-GKGCSRV 280


>gi|55701231|ref|YP_138445.1| hypothetical protein pHVE14_02 [Sulfolobus islandicus]
 gi|55650941|emb|CAG38223.1| hypothetical protein [Sulfolobus islandicus]
          Length = 303

 Score = 44.4 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +   +++++ L + +K +      ++ +  +E  K +    K K + N E     K+   
Sbjct: 155 ISNIEQRIQQLKAKIKGADKITRDKISKKLKELNKKRSELYKMKNKANAELKKFEKV--- 211

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSG 823
                +I   +  ELK  ++ L+ +I+S 
Sbjct: 212 ----TLIENEEINELKKKIEELKAQIKST 236


>gi|281353173|gb|EFB28757.1| hypothetical protein PANDA_014296 [Ailuropoda melanoleuca]
          Length = 2346

 Score = 44.4 bits (103), Expect = 0.096,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 190 HNQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRMEEQMNGLKT 244

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  N+   VEE+  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 245 SNENLQKHVEELLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 302

Query: 810 KSVMDALQKKIQSG 823
              +D L K ++  
Sbjct: 303 TRAVDELHKLLKEA 316


>gi|301778941|ref|XP_002924887.1| PREDICTED: nucleoprotein TPR-like [Ailuropoda melanoleuca]
          Length = 2363

 Score = 44.4 bits (103), Expect = 0.096,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HNQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRMEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  N+   VEE+  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNENLQKHVEELLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              +D L K ++  
Sbjct: 304 TRAVDELHKLLKEA 317


>gi|227825151|ref|ZP_03989983.1| outer membrane chaperone Skp [Acidaminococcus sp. D21]
 gi|226905650|gb|EEH91568.1| outer membrane chaperone Skp [Acidaminococcus sp. D21]
          Length = 153

 Score = 44.4 bits (103), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           ++  KV+   +V  V  I +   ++Q      + Q N +               +   ++
Sbjct: 36  SAIGKVNYNQLVQAVPGIQDAQVEMQKAAQDAESQYNEKSKDMSDADKQKLHEELQKGLE 95

Query: 806 SKELKSVMDALQKKIQSGIIML-----VGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            K+ K ++D L+KK+   I+ +     + +   + A V   V  D+     A +L + + 
Sbjct: 96  DKQ-KELVDPLKKKVDDAIVAVGKTKGLTVIVNEGAVVYGGV--DVTADVQA-ELQKQAK 151

Query: 861 K 861
           K
Sbjct: 152 K 152


>gi|145348864|ref|XP_001418863.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579093|gb|ABO97156.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 203

 Score = 44.4 bits (103), Expect = 0.100,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 32/160 (20%)

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMS----HIISEVDSKELKSVMDALQKKIQSGI- 824
            +   AK   +   + +     AD++ ++     +    DS EL  V       I     
Sbjct: 21  AEKKIAKCLKEGGKKGVEIEGAADMSGLTCFCTRMTEAGDSVELLEVSMEGMNAIPDPAN 80

Query: 825 -------------IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
                        +++    +  K +++  V E L D+ NA +  +       GGG GG 
Sbjct: 81  EEERKGCSGHISKLIIGHNDQTNKIAMVAYVAEPLKDKLNATEWMKAVCDTDLGGGVGGA 140

Query: 872 P------HMAQSGGP-NGNK-------ADQAIAGVASFLK 897
           P        A +    + +         D A+    ++L+
Sbjct: 141 PAESSTATWATASISEDTDNGKYYLKFKDNALTAAINYLR 180


>gi|330971942|gb|EGH72008.1| AAA ATPase, central region [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 854

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++  E  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQGEIERLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
           L +A  +     E    
Sbjct: 453 LEYADLEEIWTSEKAEV 469


>gi|330901395|gb|EGH32814.1| AAA ATPase, central region [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 854

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++  E  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQGEIERLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
           L +A  +     E    
Sbjct: 453 LEYADLEEIWTSEKAEV 469


>gi|302185257|ref|ZP_07261930.1| AAA ATPase, central region:Clp, N terminal:Clp, N terminal
           [Pseudomonas syringae pv. syringae 642]
          Length = 854

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++  E  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQGEIERLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
           L +A  +     E    
Sbjct: 453 LEYADLEEIWTSEKAEV 469


>gi|237801872|ref|ZP_04590333.1| clpB protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024730|gb|EGI04786.1| clpB protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 854

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++  E  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQGEIERLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
           L +A  +     E    
Sbjct: 453 LEYADLEEIWTSEKAEV 469


>gi|66043993|ref|YP_233834.1| AAA ATPase, central region:Clp, N terminal:Clp, N terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63254700|gb|AAY35796.1| AAA ATPase, central region:Clp, N terminal:Clp, N terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 854

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++  E  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQGEIERLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
           L +A  +     E    
Sbjct: 453 LEYADLEEIWTSEKAEV 469


>gi|330954257|gb|EGH54517.1| AAA ATPase, central region [Pseudomonas syringae Cit 7]
          Length = 793

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++  E ++L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQGEIQRLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
           L +A  +     E    
Sbjct: 453 LEYADLEEIWTSEKAEV 469


>gi|39961876|ref|XP_364726.1| hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145011079|gb|EDJ95735.1| predicted protein [Magnaporthe oryzae 70-15]
          Length = 709

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 69/231 (29%), Gaps = 41/231 (17%)

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           +      T V    E+       E         +EA   ++A   L  +D     +   L
Sbjct: 39  TRDSDIKTLVQRADELAAAKKPLEEEKTE----LEAKL-KKASEDLSTRD---SEIKDLL 90

Query: 750 KVSQGNVVGRVEEIWEE-------YRKLQL-----IHAKRKLQLNVEDLSCHKIADVNFM 797
           K +   V  +VE + +E         + Q           +    +E       A V  +
Sbjct: 91  K-NIDQVNAKVESLKKEKAAVDQQLAEAQKGKEGAQKETLEKIDALEKAKAELNAQVEKL 149

Query: 798 SHIISEVDSK--ELKS-----------VMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
              +++V SK   L+              D L+ ++ + I+ L       KA +     E
Sbjct: 150 KSEVADVSSKNDSLRQEQSKLLEETNSAKDTLKAELDAKIVALTSDLDAAKADLSRANEE 209

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
               +    +  +     L       +   AQ+        ++A + V S 
Sbjct: 210 AATTKTKLEEQVKTLQAELDA----TKKD-AQAAASK--GTEEAKSEVTSL 253


>gi|238881151|gb|EEQ44789.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 339

 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 13/107 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVV-----------GRVEEIWEEYRKLQLIHAKR 777
           QRA      + E   +     + +   +V            R+EE+  E +  Q      
Sbjct: 130 QRALREKEKRLENFNNQREEWRAAMDELVAVQQEGIQVYEDRIEELENENKAQQEKLDNA 189

Query: 778 KLQLNVEDLSCHKIADV--NFMSHIISEVDSKELKSVMDALQKKIQS 822
              L   +    ++     N +S  +++V   + +  ++ L+++++S
Sbjct: 190 NASLTAANSKIKELEQSIDNLLSEKVNDVQIDDSRKEIEQLKRELES 236


>gi|224009910|ref|XP_002293913.1| chromosome condensation protein-like protein [Thalassiosira
           pseudonana CCMP1335]
 gi|220970585|gb|EED88922.1| chromosome condensation protein-like protein [Thalassiosira
           pseudonana CCMP1335]
          Length = 1268

 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            H + T E   L    E     G++++EA   +     +  + EKLK   + LK ++  +
Sbjct: 882 EHKTRTSEAKDLLEAYE-----GVKKVEAEKRKE-LEAVAKECEKLKQAQTKLKCAEVEL 935

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNV 783
             ++E + ++ +  +   A  K ++++
Sbjct: 936 SAKIENLDKQIKDSERKVAHYKKEIDI 962


>gi|68490466|ref|XP_710927.1| hypothetical protein CaO19.6170 [Candida albicans SC5314]
 gi|46432188|gb|EAK91684.1| hypothetical protein CaO19.6170 [Candida albicans SC5314]
          Length = 292

 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 13/107 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVV-----------GRVEEIWEEYRKLQLIHAKR 777
           QRA      + E   +     + +   +V            R+EE+  E +  Q      
Sbjct: 130 QRALREKEKRLENFNNQREEWRAAMDELVAVQQEGIQVYEDRIEELENENKAQQEKLDNA 189

Query: 778 KLQLNVEDLSCHKIADV--NFMSHIISEVDSKELKSVMDALQKKIQS 822
              L   +    ++     N +S  +++V   + +  ++ L+++++S
Sbjct: 190 NASLTAANSKIKELEQSIDNLLSEKVNDVQIDDSRKEIEQLKRELES 236


>gi|262184413|ref|ZP_06043834.1| chromosome segregation protein [Corynebacterium aurimucosum ATCC
           700975]
          Length = 806

 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 706 MLLYIVSESSIRAGIRRIEA----ITGQ--RARSHLMGQDEKLKSLASFLK---VSQGNV 756
            +  + + +  R G+ R+ A    + GQ   A S L  Q+E L +  S  +        V
Sbjct: 374 HMAQLRAIADRREGVVRLIAAEENLAGQVSSAESELARQEETLANTKSRTRGAQAEADEV 433

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
             ++E +  E   L+  H +   +    D    ++ D    +    E     L++ +D L
Sbjct: 434 ADKLEHLAAEREPLEEAHVRAASESAAADKRLEQLRD----AQREHERTVYSLRARIDTL 489

Query: 817 QKKIQSGIIM---------LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
            + +   + +          +    E   +  +    +      + D+ R  A  
Sbjct: 490 GQTVPEALELGEGFKPLAEFISTRYETAVAAALGSFAEAQAGAVSGDIVRDLAAA 544


>gi|227833423|ref|YP_002835130.1| chromosome segregation protein [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454439|gb|ACP33192.1| chromosome segregation protein [Corynebacterium aurimucosum ATCC
           700975]
          Length = 1167

 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 706 MLLYIVSESSIRAGIRRIEA----ITGQ--RARSHLMGQDEKLKSLASFLK---VSQGNV 756
            +  + + +  R G+ R+ A    + GQ   A S L  Q+E L +  S  +        V
Sbjct: 374 HMAQLRAIADRREGVVRLIAAEENLAGQVSSAESELARQEETLANTKSRTRGAQAEADEV 433

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
             ++E +  E   L+  H +   +    D    ++ D    +    E     L++ +D L
Sbjct: 434 ADKLEHLAAEREPLEEAHVRAASESAAADKRLEQLRD----AQREHERTVYSLRARIDTL 489

Query: 817 QKKIQSGIIM---------LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
            + +   + +          +    E   +  +    +      + D+ R  A  
Sbjct: 490 GQTVPEALELGEGFKPLAEFISTRYETAVAAALGSFAEAQAGAVSGDIVRDLAAA 544


>gi|289674876|ref|ZP_06495766.1| AAA ATPase, central region:Clp, N terminal:Clp, N terminal
           [Pseudomonas syringae pv. syringae FF5]
          Length = 663

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 89  LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 146

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 147 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 201

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +    + R+E++  E  +L+
Sbjct: 202 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQGEIERLE 261

Query: 772 LIHAKRKLQLNVEDLSC 788
           L +A  +     E    
Sbjct: 262 LEYADLEEIWTSEKAEV 278


>gi|328867955|gb|EGG16336.1| putative alanyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 244

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 88/242 (36%), Gaps = 31/242 (12%)

Query: 588 SATHLLHHALSTILGSHVSQ--NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +A H+L  A+ T+LG+ V+     +      L  +       +   +K IE   N+I+  
Sbjct: 11  TACHILKGAVVTVLGTPVTASVECNNKVKGRLTVEYDSDVKPSDENVKRIEKEANNIVKA 70

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           NLP+    M+R++A      + +   Y          V ++   +    +   C   H+ 
Sbjct: 71  NLPLKAFSMDRKEAETKYTESKVNNTYIYDKFPVPESVTTLTLVEIENWNINCCPAQHLE 130

Query: 701 STGEIMLLYIVSESSIRAGIR---RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            TG+I  + I+  +          R E ++ +   +    QD                  
Sbjct: 131 KTGDIGYIKIIGTNHRPQKKEFELRFEIVSKEAVEAEQAAQD------------------ 172

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
              +   E+ +K++    + K +    +L   ++ ++   +         E+ ++++ L+
Sbjct: 173 ---KSRLEKEKKIKDEQDRLKRESTNIELVTKRVMEITLANQQDKSKAITEISTLLNILK 229

Query: 818 KK 819
             
Sbjct: 230 NN 231


>gi|223998880|ref|XP_002289113.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976221|gb|EED94549.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 742

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE----YRKLQLIHAKRKLQLNVEDLSCHK 790
           L    E ++SL+  L     ++  ++    EE      KL+     ++ QL +       
Sbjct: 600 LKENIESMESLSEQLAEDIEDIKQKITSCQEESTAEQEKLESEIKSKRRQLELLQTKITT 659

Query: 791 IADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
           + D       I + ++  K+L+++   L++  ++           KK +V   +   +  
Sbjct: 660 LNDPKGTEATIEKYNAQYKQLQAL--QLKQDKENTA---------KKNAVAEEIRNAVEK 708

Query: 849 RFNAVDLARLSAKVLGG 865
                D  + +   + G
Sbjct: 709 AQKHQDFVKKAISEMNG 725


>gi|255654753|ref|ZP_05400162.1| putative DNA mismatch repair protein [Clostridium difficile
           QCD-23m63]
 gi|296449499|ref|ZP_06891276.1| exopolyphosphatase [Clostridium difficile NAP08]
 gi|296878178|ref|ZP_06902193.1| exopolyphosphatase [Clostridium difficile NAP07]
 gi|296261563|gb|EFH08381.1| exopolyphosphatase [Clostridium difficile NAP08]
 gi|296430931|gb|EFH16763.1| exopolyphosphatase [Clostridium difficile NAP07]
          Length = 792

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 61/150 (40%), Gaps = 23/150 (15%)

Query: 730 RARSHLMGQDEKLKS-LASFLKVSQGNVVGR--VEEIWEEYRKLQLIHAKRKLQLNVED- 785
           RA+ ++  ++  L+  L +  K     V  R   E + EE  +L++ + ++  +L  +  
Sbjct: 507 RAKEYINTENIALEDVLQNVEKNRIKAVEDREEAERLKEEIERLKVEYDEKLEKLVSQRD 566

Query: 786 --LSCHKIADVNFMSHIISEVD--SKELKSV------------MDALQKKIQSGIIMLVG 829
             +   K    + +     EVD   KEL+S+            ++ L+K++ S    +  
Sbjct: 567 KMIEKAKSEAFSIIRQAKEEVDIIIKELRSLEQERASKEKNRKIEELRKELTSS---MGS 623

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           +    K+ ++  V+   +      +  ++ 
Sbjct: 624 LQPTVKSMIVPKVSNKEIKDLKPGEEVKVI 653


>gi|149190692|ref|ZP_01868959.1| putative alanyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148835458|gb|EDL52428.1| putative alanyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 213

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+  +    +   V  ++T FYAEAGGQ  D+G        + +    +    I    A 
Sbjct: 14  ELRSKVTHIEGNNVELNKTIFYAEAGGQESDSGTI----NDVSVLQATQNGSRIIYTLAS 69

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +         ++V  ID++ R  L   H A  ++   L       + + G+ I  D  R 
Sbjct: 70  LPD--FEVGETVVTCIDWERRYSLMKLHFAAEVVLEKLYQRCS-GIVRIGAHIAQDKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           DV   + +T     ++   V       +    RI++      +              R  
Sbjct: 127 DVEWPENLT-----TLLKEVETKAQLLIDSDARIISDFSDKENER------------RYW 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            VE       +   C GTH++ T E+  + +    ++  G  R+E
Sbjct: 170 KVEGF-----TQVPCCGTHLNRTSEVGQIRLKR-KNLGKGKERVE 208


>gi|330941203|gb|EGH44077.1| AAA ATPase, central region [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 854

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 8/197 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-GRVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  A  LK  +      R+E++  E  +L+
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAATKRLEKLQGEIERLE 452

Query: 772 LIHAKRKLQLNVEDLSC 788
           L +A  +     E    
Sbjct: 453 LEYADLEEIWTSEKAEV 469


>gi|148750839|ref|YP_001285882.1| putative scaffolding protein, structural protein [Lactobacillus
           phage LL-H]
 gi|418227|sp|Q04763|VG20_BPLLH RecName: Full=Minor structural protein Gp20; AltName: Full=ORF2
           protein
 gi|623088|gb|AAC00560.1| putative scaffolding protein, structural protein [Lactobacillus
           phage LL-H]
          Length = 178

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 17/150 (11%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS- 787
              L  + + LK  +S L     ++      VEE+ ++  KL+  +     QLN + L  
Sbjct: 30  YEGLEAERDALKKTSSELSSKIEDLKANSANVEELTKQIEKLKSDNENATKQLNAQKLDF 89

Query: 788 ----------CHKIADVN-FMSHIISEVDSK-ELKSVMDALQKKIQSGIIMLVGISKEKK 835
                           V   ++H     DSK  L  + D L+    S   +        K
Sbjct: 90  AVTSTIKDFGAKNAKAVKALLNHDDIRFDSKGNLIGLEDQLKSLKDSDSYLFAEDKPAGK 149

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
             +    T + +     V L +  A+ L G
Sbjct: 150 P-IQAFPTGNPVAGGKDVSLHQKIAQRLKG 178


>gi|14521845|ref|NP_127321.1| hypothetical protein PAB1262 [Pyrococcus abyssi GE5]
 gi|5459065|emb|CAB50551.1| Hypothetical protein [Pyrococcus abyssi GE5]
          Length = 805

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCH 789
            + L  ++EKLKS  + L      +  R+ ++ +   +L+    + K+     +E     
Sbjct: 541 ITFLKRENEKLKSENTKLNKENNELEKRIVQLNKTNNELKKELEEFKVTFGHIIEKNLTT 600

Query: 790 KIADVNFMSHIISEV--DSKE-LKSVM---DALQKK 819
           ++ ++      ISE   D KE L+ ++   D ++KK
Sbjct: 601 EVNNLRITITNISEYLNDRKEYLRDLLSVYDNIKKK 636


>gi|295667866|ref|XP_002794482.1| chaperone protein clpB [Paracoccidioides brasiliensis Pb01]
 gi|226285898|gb|EEH41464.1| chaperone protein clpB [Paracoccidioides brasiliensis Pb01]
          Length = 732

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 7/124 (5%)

Query: 743 KSLASFLKVSQGNVVG------RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
           + L   LK  Q  V        + +   +  ++ +    + ++ L       +       
Sbjct: 303 EKLEELLKTKQDEVKEFTDVWEKEKAELDAIKQAKEDLERARVDLEQAQREGNFAKASEL 362

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLV-GISKEKKASVLIVVTEDLLDRFNAVDL 855
              II ++++K  K   D        G+++L   ++ +  A V+   T   +++  A ++
Sbjct: 363 RYSIIPKLENKLPKEGSDTATSTTADGVVLLHDSVTSDDIAGVVSRTTGIPVNKLMAGEV 422

Query: 856 ARLS 859
            +L 
Sbjct: 423 EKLI 426


>gi|300681550|emb|CBH32647.1| alanyl-tRNA synthetase, putative, expressed [Triticum aestivum]
          Length = 256

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 16/229 (6%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI---RLQITDVQKKAEGIFVHHAIVER 562
             G +  VV D T F+ + GGQ  DTG  +       R  + DV+ K   +F +    + 
Sbjct: 31  EEGGRRAVVLDATVFHPQGGGQPADTGAIVSAAGTGARFLVEDVRVKDGVVFHYGRFEDA 90

Query: 563 G---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L    S+ L ID + R+  S  HSA HLL   ++ +   H+        PDG   
Sbjct: 91  AAGEELSQGQSVSLEIDAERRKLNSRLHSAGHLLDSCMTNLGL-HLEPGKGYHFPDGPSV 149

Query: 620 DVTHSKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RV 676
           +     P    +     +E   N++I++   V+  +   E+A      AL      D   
Sbjct: 150 EYKGVVPADQLQDKKIQLEKEANELISKGSKVLVSVFPYEEAAKLCGGALPSYIPQDSTP 209

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           R+V      G       CGGTHV+   +I  L + +   ++ G+ ++  
Sbjct: 210 RIVKFGNYPG-----CPCGGTHVADIADIGNLKVTNI-RVKKGVTKVSY 252


>gi|124010598|ref|ZP_01695214.1| cell wall surface anchor family protein [Microscilla marina ATCC
           23134]
 gi|123982213|gb|EAY23814.1| cell wall surface anchor family protein [Microscilla marina ATCC
           23134]
          Length = 369

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 22/63 (34%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A   L   ++KL   A  LK     +   +  +  +++ L+   A  K Q        +
Sbjct: 292 EAVKDLRKNNDKLDKQAQVLKAKNKKIKEALTGLKSQHKNLKAELADVKSQHKALKAELN 351

Query: 790 KIA 792
            + 
Sbjct: 352 DLK 354


>gi|169770297|ref|XP_001819618.1| nuclear pore complex protein An-Mlp1 [Aspergillus oryzae RIB40]
 gi|83767477|dbj|BAE57616.1| unnamed protein product [Aspergillus oryzae]
          Length = 2032

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 52/474 (10%), Positives = 139/474 (29%), Gaps = 59/474 (12%)

Query: 333  MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
            +     ++ +     +  L +E  R     +R L       + L     ++       + 
Sbjct: 1056 LRDEQGDVARRLEEQKSHLEAEITRLKDENERQLAAAQYHQADLKAQAEISQ------HA 1109

Query: 393  THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
                  ++++    A+ L  +   +    LE   SRA+A +        E+ W  LK++ 
Sbjct: 1110 QQNYESELVKHAEAAKNLQLVRSEANQLKLELVESRAQADTYKKDLTQKEESWNELKDR- 1168

Query: 453  GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
                   Y+        + +  +            +++ + A+ +    + E     +  
Sbjct: 1169 -------YESELSELQKRREEVLHQNSLLHSQLENITNQISALQRDRANIAETEDEAE-- 1219

Query: 513  VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
                                   G    ++    +K+   +  H +  E   LR ++   
Sbjct: 1220 ----------------SSAPNLEGLQEVIKFLRREKEIVDVQYHLSTQESKRLRQQLEYT 1263

Query: 573  LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +   + R +L     A              H + + + +       ++     +T    
Sbjct: 1264 QSQLDEARLKLEQQRRAA---------ADSEHTALSHNKLMETLNELNLFRESSVTLRNQ 1314

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
                +      +  +  + + M   +         +    +  ++++  + +     +  
Sbjct: 1315 VKQAETALSEKSARVDELVQQMEPLETRIRE-LENVVETKDGEMKLLQADRDRWQQRTQN 1373

Query: 693  LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR--------SHLMGQDEKLKS 744
            +          E+  L    E+  +    R EA++ +             L   +E+++ 
Sbjct: 1374 ILQKYDRVDPAEMEGLKEKLETLQKE---RDEAVSSRDTLQEQAAAFPEQLKHAEERVQE 1430

Query: 745  LASFL----KVSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLNVEDLSCHKIA 792
            L + L    K     + GR+     E      +    + +L+   E+LS  K  
Sbjct: 1431 LRAKLTEQFKARSKELTGRINAKQLELNTVVQEKEVIQEELKTTKEELSGLKAK 1484


>gi|193216885|ref|YP_002000127.1| massive surface protein MspG [Mycoplasma arthritidis 158L3-1]
 gi|193002208|gb|ACF07423.1| massive surface protein MspG [Mycoplasma arthritidis 158L3-1]
          Length = 2711

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 25/125 (20%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI--HAKRKLQLNVEDL 786
              A   L      L++  + L V       ++++  EE    Q    + K K Q + +DL
Sbjct: 936  NEAEDALNKAKNDLENKKNSL-VGDKENQDKIDKKLEEINNKQKEFQNEKEKQQKSEDDL 994

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
            +                 D+K LK  +D L  K+            EKK        +D+
Sbjct: 995  AKQLAN------------DAKTLKDELDDLINKLNP---YNASSDYEKKI-------KDV 1032

Query: 847  LDRFN 851
             D+  
Sbjct: 1033 EDKIK 1037



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 64/191 (33%), Gaps = 36/191 (18%)

Query: 712  SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            +E+   A +  + A  G      L   ++ +  ++   + + G +  +V ++ E  +++Q
Sbjct: 2073 NEAETNAKLSDLIAKIGDETSGLLKEVNDLINEISK-FEGNGGELTTKVNDLKERLKEIQ 2131

Query: 772  LIHAKRK--LQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIML 827
                +RK      +E+L+         +    +  +     + ++ D + +  +     L
Sbjct: 2132 RQANERKQNKDKKIEELNKELSEAKKTLDTQKTNTENLGDSINNLGDLIAQTSK-----L 2186

Query: 828  VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + ++          + L    +A D  + + K                   N +   +
Sbjct: 2187 AKVIED--------ANKALQKHNDADDEIKAATK------------------TNYDALAK 2220

Query: 888  AIAGVASFLKK 898
            +I      L +
Sbjct: 2221 SIEAAQKVLNE 2231



 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 33/177 (18%)

Query: 736 MGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIA 792
               + L  ++  L  V    +   ++ +  + + L       + +LN   L     K++
Sbjct: 161 ENAQKLLAEISQALSEVPDAKLPLEIQSLINKLKNLANASEALQQELNNSRLIEEAKKLS 220

Query: 793 DVNF--------MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           D N         +   + +   +EL+ +    ++KI+            +KA   +   +
Sbjct: 221 DANLQIKDAISKLQKHLLDKSPEELEKLA---KEKIKDL----------EKAKKAVEDAK 267

Query: 845 DLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPN--GNKADQAIAGVASFLKK 898
           ++    NA++ L +   +             A + G N    + D+AI    + LK+
Sbjct: 268 NISTLPNAIESLKKDLGQTKELK------DHANAKGLNDLVKELDKAIKDAENSLKQ 318


>gi|123375395|ref|XP_001297847.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121878181|gb|EAX84917.1| hypothetical protein TVAG_177680 [Trichomonas vaginalis G3]
          Length = 1066

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             RS +  Q+ +L+ +   L  S  + V   +E I ++ RKL+  +   K        + 
Sbjct: 698 AVRSVVETQNVQLEHIEQILGTSDPDFVHESLENIEKKIRKLKAKNKSLKQFALQMQEAA 757

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            KI              +  L+S++D L+K+I S +
Sbjct: 758 EKIDG------------NANLRSIIDELKKQIDSQV 781


>gi|159901210|ref|YP_001547457.1| anti-sigma-factor antagonist [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894249|gb|ABX07329.1| anti-sigma-factor antagonist [Herpetosiphon aurantiacus ATCC 23779]
          Length = 363

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 64/183 (34%), Gaps = 28/183 (15%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           A      +  +L+ L + L+ +       ++    E ++     A+       + +   +
Sbjct: 193 ALDAARTRQTELEQLQASLEQTVAERTATLQNTLAELKQRASEQAQLLEANQQQAVVIRE 252

Query: 791 -------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGII------MLVGISKEKKAS 837
                  +     +  ++ ++D   L    + +++++ + ++      +L+ ++      
Sbjct: 253 LGVPVIPLGGRRLVVPLVGQLDQARL----NTIRERVITAVVQQRARQVLLDVT--GVPL 306

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ---SGGPNGNKADQAIAGVAS 894
           V + +  +L     A  L      ++     G  P +AQ     G + ++   A A +  
Sbjct: 307 VDVHMAGELAAVIAATSLVGAETALV-----GINPDVAQGLVGSGIDVSRLP-AFATLEQ 360

Query: 895 FLK 897
            L 
Sbjct: 361 ALN 363


>gi|51557599|gb|AAU06440.1| surface antigen [Rickettsia helvetica]
          Length = 1141

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  Q    +     LK     +  +++ + ++ ++L  +    +L+   +        
Sbjct: 317 QRLHKQLTSSQKTTEALKSKAEEIEKKIKILSDQNKELDNLSKGARLKSTQKQDKIKIGK 376

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGI--IMLVGISKEKKASV 838
           + + +  +  E+ SK   + +D L KKI   +  ++L     + KA V
Sbjct: 377 NKDKIKKLEKELISKN--NEVDRLSKKIDISVNKVVL--TKPQGKAPV 420


>gi|75908999|ref|YP_323295.1| threonyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|75702724|gb|ABA22400.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Anabaena
           variabilis ATCC 29413]
          Length = 615

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 20/194 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  II + 
Sbjct: 38  HTASHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFTDKDLKAIQKEMVKIINRK 96

Query: 647 LPVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           LPVV   ++RE+A             +    ++   +     G     LC G HV +T +
Sbjct: 97  LPVVREEVSREEAERRIQEIKEPYKLEILADIKSEPITIYHLGNEWWDLCAGPHVENTKD 156

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----RV 760
           +     +   S+     R     G   ++ L                S   +      + 
Sbjct: 157 LNP-KAIELESVAGAYWR-----GDETKAQLQRIYATAWE-------SPEQLAEYKRRKE 203

Query: 761 EEIWEEYRKLQLIH 774
           E +  ++RKL    
Sbjct: 204 EALRRDHRKLGKEL 217


>gi|297544705|ref|YP_003677007.1| MgtE intracellular region [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842480|gb|ADH60996.1| MgtE intracellular region [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 192

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 16/128 (12%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             +D ++  L   LK        ++ E   E ++ +    K K +L              
Sbjct: 64  EDKDSQINKLTEELKAKN----EKITEYETELKEKEEQINKLKAELEKVQKERE------ 113

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGII-MLVGISKEKKASVLIVVTEDLLDRF---- 850
            +   +    +  LK +    Q         +L  +S E   ++L  + +D   +     
Sbjct: 114 LLKQQLENKQT-SLKDIASYYQNMDPQNAAQILNNMSDEDVINILGYMNKDSASKILESL 172

Query: 851 NAVDLARL 858
           NA   A++
Sbjct: 173 NADKAAKI 180


>gi|46138789|ref|XP_391085.1| hypothetical protein FG10909.1 [Gibberella zeae PH-1]
          Length = 369

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 22/175 (12%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----RVEEIWEEYRKLQLIHAKRKLQL 781
           + G R    ++ + E    +A  +     +V      +VE +    + +  + ++   + 
Sbjct: 202 VVGARVLQDVIERRE---EIAQSIGEIIEDVAAGWGVQVESML--IKDI--VFSQELQES 254

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML-----VGISKEKKA 836
                   +I +   ++       +K ++   D L       I  L     +  S   K 
Sbjct: 255 LSMAAQSKRIGESKIIAAKAEVESAKLMRQAADILSSAPAMQIRYLEAMQAMAKSANSKV 314

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             L   ++ +    NA  L   + +   G   GG+      GG +     QA+  
Sbjct: 315 IFLPGASQSMGGALNA-ALTNETGES-SGNNFGGQQDF---GGQDP-GFQQAMNA 363


>gi|307184783|gb|EFN71097.1| Ankyrin-2 [Camponotus floridanus]
          Length = 4208

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 27/149 (18%)

Query: 761  EEIWEEYRK---LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            +E  +E +K   L+   AK K   +++DL   K   V+ +                   +
Sbjct: 2973 KEFLDEMKKEASLEEERAKEKAVADLKDLKDQKDTAVSKIQETTE--------QAATDAK 3024

Query: 818  KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN----AVDLARLSAKVLGGGGGGGRPH 873
                  I       K+KK  ++  V++D+    +    A +      K +G   G     
Sbjct: 3025 GATDEAI----SAVKDKKDKIVEGVSKDIQKVADTAKVASEKVTAETKKVGEKIGTTAID 3080

Query: 874  MAQSGGPNGNKADQA-IAGVA---SFLKK 898
            MAQ          +A +  V      +K+
Sbjct: 3081 MAQG----VKDIKEATVKEVKEDTELIKE 3105



 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 23/180 (12%)

Query: 724  EAITGQRARSHLMGQDEK----LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
             A T  +         EK    L  +    K +  +    V+E  +E +K  ++  +R  
Sbjct: 2436 TATTKDKTIKEAKKMKEKGSGFLSGIFKGAKHAVEDATDDVKEFLDETKKEAVLEEERAK 2495

Query: 780  QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            +    DL   K      +S I    +          ++      +       K+KK  ++
Sbjct: 2496 EKAAADLKALKDKKDTVVSKIQETTE-----QTATDVKDAKDKAV----SAVKDKKDEIV 2546

Query: 840  IVVTED---LLDRFNA-VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
              V++D   + D   A  +      K +G   G      AQ    +     +A   V   
Sbjct: 2547 AEVSKDIQKVADTTKAVGEKITAETKKVGEKIGTTATDKAQ----DVKDIKEA--TVKEM 2600


>gi|291238027|ref|XP_002738933.1| PREDICTED: CCAAT/enhancer-binding protein delta-like [Saccoglossus
           kowalevskii]
          Length = 264

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 7/158 (4%)

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN I ++     T  M++     +   ++          VV+++ E      S      
Sbjct: 99  EVNQIESKTSKEDTEYMSQIGENRAPPTSVKTEAQEPEKIVVTIKTEKDASSPSVCQHTY 158

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQG 754
             S+      L     S    G R I+    + +  +   +++    ++      KV Q 
Sbjct: 159 STSTPETRNRLKSAPASKSLKGKRTID----KNSEEYRHRREKNNVAVRRSREKSKVKQK 214

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            V  +V ++ +E  KLQ        +L V       + 
Sbjct: 215 EVQNKVSQLQDENDKLQKKVELLTKELTVLKSLFTNVG 252


>gi|298491630|ref|YP_003721807.1| threonyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233548|gb|ADI64684.1| threonyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 606

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 20/194 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H++  A+  +        G  I  +G  +D  + +P +  +LK+I+  +  II + 
Sbjct: 29  HTASHIMAMAVQKLFPKVQVTIGPWI-ENGFYYDFDNPEPFSDKDLKAIQKEMVKIINRK 87

Query: 647 LPVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           LP+V   ++RE+A     G       +    ++   +     G     LC G HV +T +
Sbjct: 88  LPLVREEVSREEAQKLIEGIKEPYKLEILADIKQEPITIYHLGEEWWDLCAGPHVENTKD 147

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----RV 760
           I     +   S+     R     G   ++ L                +   +      + 
Sbjct: 148 INP-KAIELESVAGAYWR-----GDETKAQLQRIYATAWE-------TPEQLAEYKRRKA 194

Query: 761 EEIWEEYRKLQLIH 774
           E +  ++RKL    
Sbjct: 195 EALRRDHRKLGKEL 208


>gi|326436972|gb|EGD82542.1| hypothetical protein PTSG_03194 [Salpingoeca sp. ATCC 50818]
          Length = 314

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 86/270 (31%), Gaps = 28/270 (10%)

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +         +                 ++ V ++  + E  +     ++  V+ +QT F
Sbjct: 8   EQNVERAASPKPIPTTRLYYNDTYQFEGNAEVLSVF-ECEDSDNGDGSKQWIVLLNQTLF 66

Query: 521 YAEAGGQLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGIL---RTEMSLV-LTI 575
           + + GGQ  DTG    D    +       K     V H                +     
Sbjct: 67  HPQGGGQPSDTGTITKDDAVFRVTHVRISKDRHGVVEHLGTFANPNSTLCAGDEVSLAVD 126

Query: 576 DYQNRRQLSINHSATHLLHHALS---TILGSHVSQNGSCITPDGLRFDVT----HSKPIT 628
             + RR  S  HSA HLL  A+     +L + +   G       L         +   I 
Sbjct: 127 ADKRRRHASRLHSAGHLLDAAMHSAGHLLDAAMQAIGRTDLDTRLHLHCARATEYIGAIP 186

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + E  ++   +N+ ++  +   T +  R   +                RVVSV   +   
Sbjct: 187 AEERAAVVARLNEAVSTLVSKNTDVSMRIYDVEGSELPR---------RVVSVGGCE--- 234

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                CGGTHV++T ++  L +      + 
Sbjct: 235 ---CACGGTHVNNTSQLQGLRVTRIKKNKK 261


>gi|327306415|ref|XP_003237899.1| nuclear condensin complex subunit Smc4 [Trichophyton rubrum CBS
            118892]
 gi|326460897|gb|EGD86350.1| nuclear condensin complex subunit Smc4 [Trichophyton rubrum CBS
            118892]
          Length = 1431

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              A+ +L     ++K L+   K S  +   R   + +  + L+    K + ++   +   
Sbjct: 966  DSAKRNLADTQRRVKELSEEHKPSAAD-EKREGSLEKTIKALEKEIEKLRSEMTGVEEEI 1024

Query: 789  H----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                 KI +V  +     +     LK  +  L  ++ +  +     SK +K  V
Sbjct: 1025 QALQDKIMEVGGVRLRGQKAKVDGLKEQISLLTDEVSNAEV---SKSKNEKLRV 1075


>gi|118386415|ref|XP_001026326.1| hypothetical protein TTHERM_00669060 [Tetrahymena thermophila]
 gi|89308093|gb|EAS06081.1| hypothetical protein TTHERM_00669060 [Tetrahymena thermophila
           SB210]
          Length = 877

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
            +R  A++  +  + +   +E L+ L    ++   ++  +VE    +   L  I  +++ 
Sbjct: 508 NQRQNALSHNQILNSIKKSEELLEQLCDSYQLKIKSLEEKVENTTNQNIALDNILRQKQE 567

Query: 780 QLNVEDLSCHKIAD 793
           Q+  E+L   KI D
Sbjct: 568 QIEKEELELQKIED 581


>gi|326914706|ref|XP_003203664.1| PREDICTED: girdin-like isoform 2 [Meleagris gallopavo]
          Length = 1856

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + A S L   + ++K +   ++        R EE+  E  +L+  +   + ++   +++C
Sbjct: 597 KEASSKLNKLEFEIKQVKKEME-HYKEKAERAEELENELHRLEKENEVLQKKIANLNITC 655

Query: 789 HKIADVNFMSHIISEVDSKE--LKSVMDALQK 818
            KI     +    S++D +   LK  +D+L+ 
Sbjct: 656 EKIEA---LEKENSDLDMENRKLKKTLDSLKN 684


>gi|326914704|ref|XP_003203663.1| PREDICTED: girdin-like isoform 1 [Meleagris gallopavo]
          Length = 1884

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + A S L   + ++K +   ++        R EE+  E  +L+  +   + ++   +++C
Sbjct: 597 KEASSKLNKLEFEIKQVKKEME-HYKEKAERAEELENELHRLEKENEVLQKKIANLNITC 655

Query: 789 HKIADVNFMSHIISEVDSKE--LKSVMDALQK 818
            KI     +    S++D +   LK  +D+L+ 
Sbjct: 656 EKIEA---LEKENSDLDMENRKLKKTLDSLKN 684


>gi|228995102|ref|ZP_04154842.1| hypothetical protein bpmyx0001_57330 [Bacillus pseudomycoides DSM
           12442]
 gi|228764649|gb|EEM13458.1| hypothetical protein bpmyx0001_57330 [Bacillus pseudomycoides DSM
           12442]
          Length = 401

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 80/267 (29%), Gaps = 24/267 (8%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV     F+     +  D+     +     + +   +   +     + E+        +
Sbjct: 75  FVVTSDKAFFERLSEEDPDSQKEFFEEAYSFLRERYGEQNIVHAAVHLDEKTPHMHVGMV 134

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            +T + +   +   N      L       +          ++ D    + T  K +T+ E
Sbjct: 135 PVTEEKKLSAKQIFNRKELVSLQDDFHAHMVEKGFDLERGVSSDKKHIETTRLKALTAKE 194

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              + +            + + MN+     +     +               +       
Sbjct: 195 EVQVLEETLLEKELERQQIEKSMNQMKNRLNALKGAVK------------VGKQVEEMPV 242

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
              GG   S T EI L              RI+ +   +A      ++E L+     LKV
Sbjct: 243 KEKGGLIRSKTVEIGLEDFQ----------RIKTLA--KASEAFKRENETLQRQNHALKV 290

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           +  ++   V+ + +E ++L+   AK +
Sbjct: 291 NNTDLHTSVKRLEKEKKELEPYKAKYE 317


>gi|219841926|gb|AAI45222.1| Golgb1 protein [Mus musculus]
          Length = 893

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           + +      RI   T + A   L   ++ +  L   +      +  + E + EE +  + 
Sbjct: 35  QETAMESNNRIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAEN 94

Query: 773 IHAKRKLQLNVEDLSCHK 790
              K KL    + +S +K
Sbjct: 95  KIKKIKLHAKAKIMSLNK 112


>gi|156347847|ref|XP_001621775.1| hypothetical protein NEMVEDRAFT_v1g248638 [Nematostella vectensis]
 gi|156208030|gb|EDO29675.1| predicted protein [Nematostella vectensis]
          Length = 775

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 33/140 (23%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-------LQLIHAKRKLQL 781
           ++A   +  Q    K  +S L+     +  R+E++  E ++       LQ    + K QL
Sbjct: 46  KKAEQEVNVQHVVEKETSS-LQSRIEELQSRMEKLKRELKRQKEKESTLQGEKERLKEQL 104

Query: 782 NVEDLSCHKIA-DVNFMSHIISEVDSK--EL----KSV------MDALQKKIQSG----- 823
             +D + +K+  ++  +  I  ++D K  EL    +         D L++K++S      
Sbjct: 105 AQKDSAINKLGVELKELHEIEQKLDGKAEELAAEKRKATRATSEADKLREKVKSLQEQLK 164

Query: 824 -------IIMLVGISKEKKA 836
                  ++    +  E   
Sbjct: 165 VQRAEGEVVAAATVEVEGAV 184


>gi|325114210|emb|CBZ49767.1| hypothetical protein NCLIV_002550 [Neospora caninum Liverpool]
          Length = 5474

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            R++ I G +         EK   L   ++ +   +  +++   E   +LQ    + +++ 
Sbjct: 5224 RMKEIAGMKVLDLDKILKEKEAELKKQMEANIAALREKLKAQQEREEQLQREAHEAEMKK 5283

Query: 782  NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
              E+    ++  +  M +     D        D + KK Q   
Sbjct: 5284 RKEEQRARQLKQLRRMINCAKADDP----EAADDIFKKYQDDA 5322


>gi|118498362|ref|NP_001072990.1| kinectin isoform b [Homo sapiens]
 gi|109658796|gb|AAI17133.1| Kinectin 1 (kinesin receptor) [Homo sapiens]
 gi|109731614|gb|AAI12338.1| Kinectin 1 (kinesin receptor) [Homo sapiens]
          Length = 1306

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  ++ +LK L + LK  + ++  +   ++++ +E +  +    + K Q   +  S    
Sbjct: 912  LKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPH 971

Query: 792  AD-VNFMSHIISEVDS-----KELKSVM-------DALQKKIQSGIIMLVGISK--EKKA 836
             + +  +S    E+         LK  +       + L++K    +  L    K  + K 
Sbjct: 972  EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKV 1031

Query: 837  SVLIVVTEDLLDRFNAVDL-ARLSAKVL 863
            +     +++   +  AV+L A+   K L
Sbjct: 1032 N---KTSKERQQQVEAVELEAKEVLKKL 1056


>gi|33620775|ref|NP_891556.1| kinectin isoform a [Homo sapiens]
 gi|118498356|ref|NP_001072989.1| kinectin isoform a [Homo sapiens]
 gi|34098465|sp|Q86UP2|KTN1_HUMAN RecName: Full=Kinectin; AltName: Full=CG-1 antigen; AltName:
            Full=Kinesin receptor
 gi|30172037|gb|AAP20418.1| kinectin variant 1 [Homo sapiens]
 gi|119601087|gb|EAW80681.1| kinectin 1 (kinesin receptor), isoform CRA_a [Homo sapiens]
 gi|119601088|gb|EAW80682.1| kinectin 1 (kinesin receptor), isoform CRA_b [Homo sapiens]
 gi|119601090|gb|EAW80684.1| kinectin 1 (kinesin receptor), isoform CRA_b [Homo sapiens]
          Length = 1357

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  ++ +LK L + LK  + ++  +   ++++ +E +  +    + K Q   +  S    
Sbjct: 935  LKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPH 994

Query: 792  AD-VNFMSHIISEVDS-----KELKSVM-------DALQKKIQSGIIMLVGISK--EKKA 836
             + +  +S    E+         LK  +       + L++K    +  L    K  + K 
Sbjct: 995  EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKV 1054

Query: 837  SVLIVVTEDLLDRFNAVDL-ARLSAKVL 863
            +     +++   +  AV+L A+   K L
Sbjct: 1055 N---KTSKERQQQVEAVELEAKEVLKKL 1079


>gi|324500121|gb|ADY40067.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1697

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 46/429 (10%), Positives = 128/429 (29%), Gaps = 28/429 (6%)

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
           + +  +Q  +          +     +   R R  A  L         +W  L       
Sbjct: 176 MQISQLQAEIQRLHQQYELNMQDKDRMSANRERNLAQYLSEEQKRMMDLWAEL------- 228

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
                  +R       D+     +   +    V+  V  +V++  I   A S Q  ++  
Sbjct: 229 -----QQVRRQFAEYRDQTARDLENQRNEFARVTRSVGGVVRKLSITNVAESAQAGDIEL 283

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
                       L            ++  +   +             G +    + +   
Sbjct: 284 ADAIRRFSEQQALPAGASTEDYNALMKRYEESIERIVELESRGDGSVGKMTALETELRRT 343

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQN----GSCITPDGLRFDVTHSKPITSAE 631
             +             +   +  +      +++    G+ + P  +   V ++      E
Sbjct: 344 KDKLAECQEALRKIHDVTKESERSTDVVKRTRSLSPGGTHVVPSEVLRSVRYAIRSRDNE 403

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ ++  + +   Q   +VTR    ++A       L  +K     R  +++     V   
Sbjct: 404 LQQLQRKLKNTELQISELVTRFEGADEARKRLEKQLADSKREISNREKTIDEASREVRRL 463

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----RSHLMGQDEKLKSLAS 747
                  + +T     +   + + +   +RR++ +  Q      R  L   + + + +  
Sbjct: 464 E----DRLRATESDKTVAENARAKLEEEVRRLKLMIDQTVADGERKALEEAEAQKRIIEE 519

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ----LNVEDLSCHKIADVNFMSHIISE 803
             K     ++ R++ + ++ ++L+      K +     N  + +  K+ + +     + +
Sbjct: 520 EYKTRITELLHRIDTLQDDNKRLKGDLNNVKDKFRNLENDFNATLRKLDEKDLTIKHLED 579

Query: 804 VDSKELKSV 812
           +    LK +
Sbjct: 580 LRGDLLKDL 588


>gi|255638817|gb|ACU19712.1| unknown [Glycine max]
          Length = 262

 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 16/231 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD---GIRLQITDVQKKAEGIFVHHAIVERG 563
              +  +  D+T FY + GGQ  DTG  +       +  ++DV+ K   +F +      G
Sbjct: 35  DDGRHVLTLDRTIFYPQGGGQPADTGFVLIHGFDNNKFLVSDVRSKDGIVFHYGFFENLG 94

Query: 564 -----ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP--DG 616
                 L     + L +D   R+  S  HSA HLL   L  I   ++    +   P    
Sbjct: 95  GEFEPTLEKGKEVSLFVDQPRRKLNSRLHSAGHLLDICLPRIGLGNLEPGKAYHFPDGPW 154

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-R 675
           + +  T S+    ++ K +E   N +I+    V   I+  ++A       L      +  
Sbjct: 155 VEYKGTISQNEMQSKQKDLELEANALISMGGKVSVDILPYDEAAKLCGGCLPDYVPKEST 214

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            R+V +    G       CGGTHV+   +I  + +    S +   +    +
Sbjct: 215 PRIVRIRDNPG-----CPCGGTHVADISDIKQIKVSQIRSKKGLTKAYYYV 260


>gi|194380864|dbj|BAG64000.1| unnamed protein product [Homo sapiens]
 gi|219521513|gb|AAI43721.1| KTN1 protein [Homo sapiens]
          Length = 1329

 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  ++ +LK L + LK  + ++  +   ++++ +E +  +    + K Q   +  S    
Sbjct: 935  LKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPH 994

Query: 792  AD-VNFMSHIISEVDS-----KELKSVM-------DALQKKIQSGIIMLVGISK--EKKA 836
             + +  +S    E+         LK  +       + L++K    +  L    K  + K 
Sbjct: 995  EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKV 1054

Query: 837  SVLIVVTEDLLDRFNAVDL-ARLSAKVL 863
            +     +++   +  AV+L A+   K L
Sbjct: 1055 N---KTSKERQQQVEAVELEAKEVLKKL 1079


>gi|226325226|ref|ZP_03800744.1| hypothetical protein COPCOM_03018 [Coprococcus comes ATCC 27758]
 gi|225206574|gb|EEG88928.1| hypothetical protein COPCOM_03018 [Coprococcus comes ATCC 27758]
          Length = 359

 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L       + +AS L+ S      +++ +  +  +L+      + +L + +L       +
Sbjct: 143 LQKDIADWEEIASELETSNSEAAAKIDMLTRDAMRLENEKRAVERKLEMAELEQLNANAL 202

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           N +   ++ V  + L  ++D  +      I++L
Sbjct: 203 NGIRKALTVV-PENLTQLLDLAKVLYPDRIVIL 234


>gi|189237907|ref|XP_969118.2| PREDICTED: similar to GA18707-PA [Tribolium castaneum]
          Length = 4912

 Score = 43.6 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 18/139 (12%)

Query: 737  GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK------ 790
              D++ KSL   L   + ++  + + + +E + L+    K K +L        K      
Sbjct: 1876 ALDKENKSLKDELNKLKQDLASK-DALDKENKSLKDELNKLKQELAAAKQDTSKGDSDNE 1934

Query: 791  ----IADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                  DV  +      +  ++K LK  ++ L++++ +   +   +  + K        +
Sbjct: 1935 NKRLKDDVKNLKSENQSLKDENKSLKDELNKLKQELANRAGV---VQDDSKDKEFAKERD 1991

Query: 845  DLLDRFNAVDLARLSAKVL 863
            DLL +  A    +  A +L
Sbjct: 1992 DLLKQIAAQK--KEIADLL 2008



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 44/100 (44%), Gaps = 13/100 (13%)

Query: 730  RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              +S L  +++ LK   + LK     +  +   + +E + L+    K K +L  +D    
Sbjct: 1824 AVKSALEIENKSLKDETNRLK---QELAAK-TGLEQENKSLKEDLNKLKQELASKDALDK 1879

Query: 790  K----IADVNFMSHIISEVDS-----KELKSVMDALQKKI 820
            +      ++N +   ++  D+     K LK  ++ L++++
Sbjct: 1880 ENKSLKDELNKLKQDLASKDALDKENKSLKDELNKLKQEL 1919


>gi|159111498|ref|XP_001705980.1| GTP-binding protein ARD-1, putative [Giardia lamblia ATCC 50803]
 gi|157434072|gb|EDO78306.1| GTP-binding protein ARD-1, putative [Giardia lamblia ATCC 50803]
          Length = 399

 Score = 43.6 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 76/234 (32%), Gaps = 15/234 (6%)

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPI---TSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            +   H+S +G      G     +  K     +  E  +    +N            I +
Sbjct: 52  DLAEPHISASGFGNLISGATSQRSVGKQHLCDSCQEAGASVFCLNCQGWLCSRCEANIHH 111

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            +  +     + L        +    E       +       +   +G           S
Sbjct: 112 NKLFVRHERVSALDYMPPVMCKYHEAEVTTHICATCQELCCIYCIVSGSHPPGPDHIVQS 171

Query: 716 IRAG--IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK---- 769
           +  G  + R+E  +   A   L  +   L+     LKVS   +   VE +    R+    
Sbjct: 172 VAKGLSVVRLEMSS---ALDLLQQKSSDLEQALESLKVSTDELNESVELVRSRTREGFER 228

Query: 770 LQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           L+ I  +R+  L  N+E     +  D++  + II    +  ++S++    +K+Q
Sbjct: 229 LRKILNEREADLLDNIERFKIEQSRDLHDKTQIIRAAHTG-IRSLIQETTQKLQ 281


>gi|308159299|gb|EFO61840.1| GTP-binding protein ARD-1, putative [Giardia lamblia P15]
          Length = 417

 Score = 43.6 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 67/204 (32%), Gaps = 12/204 (5%)

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
             +  E  +    +N            I + +  +     + L        +    E   
Sbjct: 82  CDSCQEAGASVFCLNCQGWLCSRCEANIHHNKLFVRHERVSALDYMPPVMCKYHETEVTT 141

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG--IRRIEAITGQRARSHLMGQDEKLK 743
               +       +   +G           S+  G  + R+E  +   A   L  +   L+
Sbjct: 142 HICATCQELCCIYCIVSGSHPPGPDHIVQSVAKGLSVVRLEMSS---ALDLLQQKSSDLE 198

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRK----LQLIHAKRKLQL--NVEDLSCHKIADVNFM 797
                LKVS   +   VE +    R+    L+ I  +R+  L  N+E     +  D++  
Sbjct: 199 QALESLKVSTDELNESVELVRSRTREGFERLRKILNEREADLLDNIERFKIEQSRDLHDK 258

Query: 798 SHIISEVDSKELKSVMDALQKKIQ 821
           + II    +  ++S++    +K+Q
Sbjct: 259 TQIIRAAHTG-IRSLIQETTQKLQ 281


>gi|194210412|ref|XP_001487918.2| PREDICTED: translocated promoter region (to activated MET oncogene)
           isoform 1 [Equus caballus]
          Length = 2391

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 267 HNQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRMEEQMNGLKT 321

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  N+   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 322 SNENLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 379

Query: 810 KSVMDALQKKIQSG 823
              +D L K ++  
Sbjct: 380 TRAVDELHKLLKEA 393


>gi|308811769|ref|XP_003083192.1| unnamed protein product [Ostreococcus tauri]
 gi|116055071|emb|CAL57467.1| unnamed protein product [Ostreococcus tauri]
          Length = 1536

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK-LQLNVED 785
           T +R  + + G+ ++L+     LK     +    +++ +E ++L    +K +     +  
Sbjct: 376 TERRLDNKIDGESKELEETQDQLKDETEKLEDTQDQLKDETKELDDTQSKLQDTTTKLAQ 435

Query: 786 LSCHKIADVNFMSHIISEVD-------------SKELKSVMDALQKKIQS 822
            S  +  DVN +   I   D             SKEL    DAL+ + + 
Sbjct: 436 ASVKEQGDVNKLQDKIDGEDKELDETQSKLENESKELDETQDALKDESKE 485


>gi|315452409|ref|YP_004072679.1| hypothetical protein Hfelis_00010 [Helicobacter felis ATCC 49179]
 gi|315131461|emb|CBY82087.1| hypothetical protein HFELIS_00010 [Helicobacter felis ATCC 49179]
          Length = 638

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN--VEDLSCHKIA 792
           L  +D+ L+ +A  LK  +  V     ++ +  + L+ +  + K +     ++L   +  
Sbjct: 366 LKEKDKTLEKVAQELKAKERQVQEHARDLADSNKALEKLTQELKAKDTEHTKELEALQTQ 425

Query: 793 DVNFMSHIISEVDSKE-LKSVMDALQKKIQS 822
               +    +E+D    L+  +  ++  +Q 
Sbjct: 426 HAKELEKARNEIDKDTKLQGYVGKVKDLLQK 456


>gi|304439665|ref|ZP_07399567.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371845|gb|EFM25449.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 481

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              N S    L       L   V+ N          F +              E   N++
Sbjct: 65  TKSNRSVEISLDTEARMDLAEEVTANAILRLVIKNTFSLD----------PEYEIFENNL 114

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I  +   +T     +  I              +  V ++              G  +  T
Sbjct: 115 IVMDKKDITYQDFDQLEILCNQLVRSNLPIEVKGNVATIPGLGSIDFD-----GPILKRT 169

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            E+ ++ +   S   +GI+ IE + G++A      + + + ++    +V + N+  +++ 
Sbjct: 170 SEVSIIKLKMPSKTLSGIQ-IEILCGRKAYLDYKRKSKLIDNMMMTFRVDEENLFAKMKS 228

Query: 763 I----------WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
           I            E R  +L   K+  +    +    + +D       IS  DSK  + 
Sbjct: 229 IAIGKGYDFERRAEERAKKLEEMKQLEESKNLEDKPSESSD-----EEISNKDSKSSRK 282


>gi|50546030|ref|XP_500548.1| YALI0B05874p [Yarrowia lipolytica]
 gi|49646414|emb|CAG82779.1| YALI0B05874p [Yarrowia lipolytica]
          Length = 1196

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 21/160 (13%)

Query: 726  ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE------EYRKLQLIHAKRKL 779
            ++G +  S L    ++LK +   L V +  ++    ++ E      E  +       RK 
Sbjct: 1012 VSGLKLESDLAASKKELKEVTEKLTVVKEELIDITSKLTEAKKEHIELTETVSELQARKS 1071

Query: 780  QLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            +L   +   ++     +  +  + + +  ++ K L S++D  +  + S  +    I    
Sbjct: 1072 ELTNANDGANECLRIRLESLKSLENRVKSLNDKTLDSLVDRSKSILGSATM---SILNSG 1128

Query: 835  KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
            + +     T    +   A ++ R SA +L       +P +
Sbjct: 1129 QLNSQGQPTSSKRNLSLAGNVIRESATLL-------KPDL 1161


>gi|225390428|ref|ZP_03760152.1| hypothetical protein CLOSTASPAR_04181 [Clostridium asparagiforme
           DSM 15981]
 gi|225043484|gb|EEG53730.1| hypothetical protein CLOSTASPAR_04181 [Clostridium asparagiforme
           DSM 15981]
          Length = 217

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 20/167 (11%)

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA----ITGQRARSHLMGQDEKLKSLASFL 749
            G   V +T +   +    E+   +  R I      ITG+             + LA  +
Sbjct: 37  DGSFAVKNTAQT--MNETLEAMQASLYRAISYDAQDITGEAISEARNQGTILQEQLARLI 94

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCH-KIADVNFMSHIISEV- 804
           +   G++   + ++  +  +L+    +      Q    +   + +   +  +  + +E+ 
Sbjct: 95  QNPSGDM-EAIAKLENDLSELERRQEQVLVLAAQNKKSEALAYMEDNQIPVIEAVQTELA 153

Query: 805 ----DSKEL-KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
                +K   + +MD+L++  ++ II+LV +      SVL    +  
Sbjct: 154 QFILPAKATERELMDSLRRTQRNAIILLVSL---GAVSVLFAARDGA 197


>gi|148665530|gb|EDK97946.1| mCG141708, isoform CRA_a [Mus musculus]
          Length = 3176

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           + +      RI   T + A   L   ++ +  L   +      +  + E + EE +  + 
Sbjct: 35  QETAMESNNRIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAEN 94

Query: 773 IHAKRKLQLNVEDLSCHK 790
              K KL    + +S +K
Sbjct: 95  KIKKIKLHAKAKIMSLNK 112


>gi|115397959|ref|XP_001214571.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114192762|gb|EAU34462.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 281

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADV 794
                + K     LK         +++  E+ + LQ   A  + +   E         ++
Sbjct: 76  KEAHSRTKEEVQSLKNDIKEKDKAIDKQTEQIKSLQSQAASLQSKYEDERHKVADAHGEI 135

Query: 795 NFMSHIISEVDSK--ELKSVMDALQKKI 820
             +   I+  DSK  ELKS    L+++ 
Sbjct: 136 GGLLQQIASKDSKIDELKSAGSQLRERY 163


>gi|225352076|ref|ZP_03743099.1| hypothetical protein BIFPSEUDO_03686 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157323|gb|EEG70662.1| hypothetical protein BIFPSEUDO_03686 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 498

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 56/146 (38%), Gaps = 24/146 (16%)

Query: 701 STGEIMLLYIVSESSIRAG--IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ----- 753
             GE    ++ +   + +   + R+ A    RA   L   ++  K+L+     S      
Sbjct: 82  REGEGDYAWLANSMDVASHRYLYRLTARA-HRAIEALDRLEDTTKALSGAQANSIIMEIE 140

Query: 754 -------GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVD 805
                   +   R+  +  +  + Q    + +    +E L+  ++ D+  + H  +  V 
Sbjct: 141 HARMQLTADPRERIRLLKRDIEERQKEIDELEHSEALEKLTSEQVGDIIGVIHNTLRGVP 200

Query: 806 SKELKSVM-------DALQKKIQSGI 824
             +L+ +        DAL++++Q+G 
Sbjct: 201 I-DLRELALSERDNGDALRRRMQAGA 225


>gi|226958601|ref|NP_084311.1| golgi autoantigen, golgin subfamily b, macrogolgin 1 [Mus musculus]
          Length = 3238

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           + +      RI   T + A   L   ++ +  L   +      +  + E + EE +  + 
Sbjct: 35  QETAMESNNRIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAEN 94

Query: 773 IHAKRKLQLNVEDLSCHK 790
              K KL    + +S +K
Sbjct: 95  KIKKIKLHAKAKIMSLNK 112


>gi|187956399|gb|AAI50732.1| Golgb1 protein [Mus musculus]
          Length = 3238

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           + +      RI   T + A   L   ++ +  L   +      +  + E + EE +  + 
Sbjct: 35  QETAMESNNRIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAEN 94

Query: 773 IHAKRKLQLNVEDLSCHK 790
              K KL    + +S +K
Sbjct: 95  KIKKIKLHAKAKIMSLNK 112


>gi|109392293|ref|YP_655523.1| gp6 [Mycobacterium phage Halo]
 gi|91980543|gb|ABE67263.1| hypothetical protein Halo6 [Mycobacterium phage Halo]
          Length = 180

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 21/123 (17%)

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +V R+E +  E + L+            +     KIAD   +   +        K+V +A
Sbjct: 50  LVKRLEALKAENKVLKPKAKLVDDAEEAKKTDAQKIAD---LQAKVDAQP----KAVAEA 102

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG--RPH 873
           L++ +    + L GI K+     L   T +L        L +   ++L  GG GG  R +
Sbjct: 103 LREHL----VELHGIDKDDAELFLTGDTPEL--------LLKQVGRLLEQGGAGGSKRKN 150

Query: 874 MAQ 876
             Q
Sbjct: 151 YVQ 153


>gi|302810763|ref|XP_002987072.1| hypothetical protein SELMODRAFT_425880 [Selaginella moellendorffii]
 gi|300145237|gb|EFJ11915.1| hypothetical protein SELMODRAFT_425880 [Selaginella moellendorffii]
          Length = 105

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 4/26 (15%)

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDL 113
           +FFEM GNFSF   FK  A   AW+L
Sbjct: 2   SFFEMPGNFSFRD-FKHDA---AWEL 23


>gi|292626984|ref|XP_002666501.1| PREDICTED: laminin subunit beta-2 [Danio rerio]
 gi|220675879|emb|CAX12737.1| novel protein similar to vertebrate laminin, beta 2 (laminin S)
            (LAMB2) [Danio rerio]
          Length = 1782

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 688  VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                   G   V+ T      +   E     G+  +E +  Q A +    Q+ K ++ A+
Sbjct: 1421 CGGLNCNGAVAVADTALDRSKHAEKELDKAMGV--VEELFKQVADAKTKAQEAKDRAQAA 1478

Query: 748  FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
              K S  +   +V+    + R L     +  +Q   +  S   +A+   +   I     K
Sbjct: 1479 LEKAS--DTKNKVDHSNNDLRDLIKQIRQFLMQEGADPDSIEAVAN-RVLELSIP-ASPK 1534

Query: 808  ELKSVMDALQKKIQS 822
            +++ + D ++ +++S
Sbjct: 1535 QIRHLADEIKDRVKS 1549


>gi|124087782|ref|XP_001346873.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|145474891|ref|XP_001423468.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057262|emb|CAH03246.1| hypothetical protein with coiled-coil domains [Paramecium
           tetraurelia]
 gi|124390528|emb|CAK56070.1| unnamed protein product [Paramecium tetraurelia]
          Length = 786

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  + ++L+ L      S  +++  +E + ++ ++   +  +   QL   D   + + 
Sbjct: 205 DTLAKKLKELEKLQKSFGGSPEDLLKELERLKKKAKEADDLKKELDKQLRENDKQKNDLD 264

Query: 793 DVNFMSHIISEVDSKE--LKSVMDALQKKIQSG 823
            ++ +     ++  +   L   ++ L+ K++  
Sbjct: 265 VLDDLRQNAQDLQMENGYLNQQLNDLKNKLRDA 297


>gi|6606244|gb|AAF19136.1|AF143471_1 BdrC4 [Borrelia hermsii]
          Length = 202

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 55/105 (52%), Gaps = 9/105 (8%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            G   +S +   D K+ ++ + LK    ++  +++ + E    +++ + + +L+ +++DL
Sbjct: 58  VGASLKSDIKDLDNKIDNVRNELKSDIKDLDNKIDTV-ENNLNIKIDNVRNELKSDIKDL 116

Query: 787 SCHKIADV-NFMSHIISEV------DSKELKSVMDALQKKIQSGI 824
             +KI  V N ++  I  V      D K+L + +D ++ +++S I
Sbjct: 117 D-NKIDAVENNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDI 160



 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 732 RSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR------KLQLNVE 784
             +L       L+ + + LK    ++  +++ +  E +        +       L + ++
Sbjct: 44  IEYLETTFNLKLEKVGASLKSDIKDLDNKIDNVRNELKSDIKDLDNKIDTVENNLNIKID 103

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           ++     +D+  + + I  V++  L   +D ++ +++S I
Sbjct: 104 NVRNELKSDIKDLDNKIDAVENN-LNIKIDNVRNELKSDI 142


>gi|297827939|ref|XP_002881852.1| hypothetical protein ARALYDRAFT_321928 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327691|gb|EFH58111.1| hypothetical protein ARALYDRAFT_321928 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 742

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 70/239 (29%), Gaps = 27/239 (11%)

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR-EDAIASG 663
           V   G  ++      D+ +S+   S         +   I    P +              
Sbjct: 132 VDGEGGGVSKKKETVDIINSEDYASQASLKGSVTLMRKIFAEHPEIAEEFKPKNQVFKKE 191

Query: 664 AAALLGTKYNDRVRV----VSVEYEDGGVHSSALCGGTHVSSTGEIML-LYIVSESSIRA 718
              +L   Y+    +    +       G  S     G H   T E+ L   I  E     
Sbjct: 192 YMNILRNAYSKVSELAEVKMDWVKSKIGEVSLERKKGYH--ETSEVPLDNKIADEDDDDD 249

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASF--------LKVSQGNVV-----------GR 759
                +        S     +E+LK+L           LK     +             R
Sbjct: 250 DDDDDDDDDDDDDESWAQDLEERLKNLEGMEFDFKMDCLKSKLDEISLERKISYDADRSR 309

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +++ E  + L+L+    +L      L   K+ +V+      ++ D  +++ + D ++ 
Sbjct: 310 FQQLEERVKDLELMENGLRLDSLKSKLEESKLEEVSLEKKKTADADGSQVQELEDRVKN 368



 Score = 38.2 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 26/161 (16%)

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
            +V  +            G   V  + E     + +      G +R +A  G R    L 
Sbjct: 537 EMVDFKGFQVLYTQKEDAGWYRVQQSKEA----VKNFEVSLKGKKRDDAD-GSR----LQ 587

Query: 737 GQDEKLKSLA----SFLKVSQGNV----------VGRVEEIWEEYRKLQL-IHAKRKLQL 781
             +E+LK+L       LK     V          + RV+++ E  + L+L      K +L
Sbjct: 588 QLEERLKNLELMELDCLKSKLEEVSLDKKKADADLSRVQQLEERLKNLELMELDCLKSKL 647

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
               L   K          + E +  EL  + D L+ K++ 
Sbjct: 648 EEVSLENKKANADWSRVQQLEERNL-ELMEL-DCLKSKLEE 686


>gi|17227831|ref|NP_484379.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|17129680|dbj|BAB72293.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 615

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 20/194 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  II + 
Sbjct: 38  HTASHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFTDKDLKAIQKEMVKIINRK 96

Query: 647 LPVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           LPVV   ++RE+A             +    ++   +     G     LC G HV +T +
Sbjct: 97  LPVVREEVSREEAERRIQEIKEPYKLEILADIKSEPITIYHLGNEWWDLCAGPHVENTKD 156

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----RV 760
           +     +   S+     R     G   ++ L                +   +      + 
Sbjct: 157 LNP-KAIELESVAGAYWR-----GDETKAQLQRIYATAWE-------TPEQLAEYKRRKE 203

Query: 761 EEIWEEYRKLQLIH 774
           E +  ++RKL    
Sbjct: 204 EALRRDHRKLGKEL 217


>gi|313888232|ref|ZP_07821904.1| copper amine oxidase N-terminal domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845763|gb|EFR33152.1| copper amine oxidase N-terminal domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 514

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            + L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +KI
Sbjct: 36  INDLEDQIKDLNEKKQKDQSKIDELKEKLESFKDNGEKLKQEKAKLEEEIRDKD---NKI 92

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 93  AQLNKEIENLKNSNNDELIAEITQLKDELK 122



 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHK 790
               +  K + +    +   ++  + ++ +E ++LQ  +AK K        +L   K
Sbjct: 90  NKIAQLNKEIENLKNSNNDELIAEITQLKDELKRLQDENAKLKEDYSSTKWELEAEK 146


>gi|302802909|ref|XP_002983208.1| hypothetical protein SELMODRAFT_422552 [Selaginella moellendorffii]
 gi|300148893|gb|EFJ15550.1| hypothetical protein SELMODRAFT_422552 [Selaginella moellendorffii]
          Length = 262

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +GL   + + S L  D+ L+G+ AF L+DT+G P+D+ Q +   +    +DI  FN+ +E
Sbjct: 6   QGLEKFNRLTSDLKSDQ-LSGEDAFLLWDTYGFPIDLTQLMAEEK-HIRVDIEGFNRVME 63

Query: 424 EQRSRARAHSLG 435
           E + +ARA    
Sbjct: 64  EAKEKARAARGK 75


>gi|289578429|ref|YP_003477056.1| MgtE intracellular region [Thermoanaerobacter italicus Ab9]
 gi|289528142|gb|ADD02494.1| MgtE intracellular region [Thermoanaerobacter italicus Ab9]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 16/128 (12%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             +D ++  L   LK        ++ E   E ++ +    K K +L              
Sbjct: 64  EDKDSQINKLTEELKAKN----EKITEYETELKEKEDQINKLKAELEKVQKERE------ 113

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGII-MLVGISKEKKASVLIVVTEDLLDRF---- 850
            +   +    +  LK +    Q         +L  +S E   ++L  + +D   +     
Sbjct: 114 LLKQQLENKQT-SLKDIASYYQNMDPQNAAQILNNMSDEDVINILGYMNKDSASKILESL 172

Query: 851 NAVDLARL 858
           NA   A++
Sbjct: 173 NADKAAKI 180


>gi|313891069|ref|ZP_07824688.1| LPXTG-motif cell wall anchor domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120432|gb|EFR43552.1| LPXTG-motif cell wall anchor domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 532

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++A++ L   + KL   A  +KV    +  +V  + EE  + ++   K + ++   ++  
Sbjct: 329 EKAKADLAEVEAKLAE-ADKVKV---ELEAKVATLTEELEEAKVEAEKLEAKV---EVLA 381

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            ++A+V          + + L++ +D L+++ Q  I  L  I  EK
Sbjct: 382 KELAEVK--------AEKEALQAEIDKLKEEHQKEIDALNAILAEK 419


>gi|146185520|ref|XP_001032012.2| UBX domain containing protein [Tetrahymena thermophila]
 gi|146142736|gb|EAR84349.2| UBX domain containing protein [Tetrahymena thermophila SB210]
          Length = 2004

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 25/55 (45%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
             + ++L+ + +  K  +   + R+ ++ E  ++ +    K +LQ   E+    K
Sbjct: 723 KKEQQELERIQNEYKKQKEEELERIAKLKEIKKQQEEEIEKLRLQRAREEEEKQK 777


>gi|77461055|ref|YP_350562.1| chaperone clpB [Pseudomonas fluorescens Pf0-1]
 gi|77385058|gb|ABA76571.1| chaperone [Pseudomonas fluorescens Pf0-1]
          Length = 854

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 8/198 (4%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  +    G      G+ + P   R ++      T  E +   +   D   +       
Sbjct: 280 LHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYRQYIEK--DAALERRFQKVL 337

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +         L  +Y    +V   +         A    +H   T   +    + 
Sbjct: 338 VDEPSEEDTIAILRGLKERYEVHHKVAITDGA-----IIAAAKLSHRYITDRQLPDKAID 392

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQ 771
                A   R+E  +       L  +  +LK  +  LK    +    R+E++ EE  + +
Sbjct: 393 LIDEAASRIRMEIDSKPEVLDRLERRLIQLKVESQALKKESDDAAKKRLEKLQEEIDRHE 452

Query: 772 LIHAKRKLQLNVEDLSCH 789
             ++  +   N E     
Sbjct: 453 REYSDLEEIWNSEKAEVQ 470


>gi|228905303|ref|ZP_04069285.1| TRNA synthetase-related protein [Bacillus thuringiensis IBL 4222]
 gi|228854340|gb|EEM99016.1| TRNA synthetase-related protein [Bacillus thuringiensis IBL 4222]
          Length = 207

 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 72/220 (32%), Gaps = 33/220 (15%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDG--------IRLQITDVQK--KAEGIFVHHAIVERGI 564
            +QT FY E GGQ+GD G   G+           L         K      H        
Sbjct: 1   MNQTVFYPEGGGQIGDQGWIEGNEVIDTQKTGGNLFYHSNFPIIKVGSEVAHILKEPVKG 60

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           LR  M +   I+++ R  L   H+A HL+++    + G  +   G  I  D  RFD    
Sbjct: 61  LREGMEVKAKINWERRHMLMRMHAAAHLVYYYTFQVFG-EMYVKGCHIAEDRARFDFYSP 119

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
                 E     +   ++I  +   +  I   E+  A                       
Sbjct: 120 DKRLDREGLDKVEEFANLIVTDNIPIKNIPLNEEPEAINWIC------------------ 161

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                    CGGTHV  TG+I  + +   S     + R+ 
Sbjct: 162 ---GDMHIPCGGTHVRQTGDIGEISVRRNSR-GKNLERMY 197


>gi|297840519|ref|XP_002888141.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333982|gb|EFH64400.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 71

 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P  AQ+GG        A+A     L
Sbjct: 37  KPSFAQAGGRKPENLPSALAKAREDL 62


>gi|148665531|gb|EDK97947.1| mCG141708, isoform CRA_b [Mus musculus]
          Length = 3138

 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI   T + A   L   ++ +  L   +      +  + E + EE +  +    K KL  
Sbjct: 6   RIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAENKIKKIKLHA 65

Query: 782 NVEDLSCHK 790
             + +S +K
Sbjct: 66  KAKIMSLNK 74


>gi|270007958|gb|EFA04406.1| hypothetical protein TcasGA2_TC014705 [Tribolium castaneum]
          Length = 1336

 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---QLIHAKRK 778
            R E  + +   + L  ++ +LK +   L   + ++  +++++ EE+ K         K K
Sbjct: 921  RSEVNSKEVVINSLKDREMELKKMNEHLSKEREDINRQLKQLQEEFSKKSGNNEEIDKLK 980

Query: 779  LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             +L  E L   +      ++ +   ++ K+L+      + KI + 
Sbjct: 981  SKLQTESLLKQQA-----VNKLHEVLNRKDLRET--KGKSKISNA 1018


>gi|238920792|ref|YP_002934307.1| alanyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|238870361|gb|ACR70072.1| alanyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
          Length = 255

 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 69/221 (31%), Gaps = 30/221 (13%)

Query: 509 QKVEVVFDQTPFYAEAGGQLG---DTGCAIGDGIRLQITDVQKKAEGIFVHHAIV--ERG 563
           +    V D     A  GG      D    +G  + ++   V      +            
Sbjct: 51  ESGGQVCDVGSIRAVVGGAPCPVVDVQHKLGHRLYIKREGVNVPLVDVETRIVHRLAYAP 110

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L+    +++ I++  R  +  +H+  H L  A S    +  S  G  I      F  + 
Sbjct: 111 NLQPGDRVIMQINWSRRYAIMRHHTLAHFLFSAFSRHFSASASVKGCIIDAQKAVF--SL 168

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            K ++  +  +I+    +++AQ  P+           A     L    Y +         
Sbjct: 169 DKKLSDDDFSAIQSYTREMLAQGSPMWIE-------PAPETDTLFYWNYGE--------- 212

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR-RI 723
                 +   CGGTHV +  EI    I          R RI
Sbjct: 213 ------TIIPCGGTHVQALAEISDAAIFFHKKNTGRKRCRI 247


>gi|193216477|ref|YP_001999719.1| massive surface protein MspA [Mycoplasma arthritidis 158L3-1]
 gi|193001800|gb|ACF07015.1| massive surface protein MspA [Mycoplasma arthritidis 158L3-1]
          Length = 2336

 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 27/126 (21%)

Query: 729  QRARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
              A   L      L++  + L   K +Q  +  ++EEI  + ++LQ  + K K Q + +D
Sbjct: 936  NEAEDALNKAKNDLENKKNSLVGDKENQNKIDKKLEEINNKQKELQ--NEKEKQQKSEDD 993

Query: 786  LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
            L+                 ++K LK  +D L  K+            EKK        +D
Sbjct: 994  LAKQLTN------------EAKTLKDELDDLVNKLNP---YDASSDYEKKI-------KD 1031

Query: 846  LLDRFN 851
            + D+  
Sbjct: 1032 VEDKIK 1037



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 730  RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            +A   L  Q  ++  L      ++ +   +V ++ E  + L+    K     N + +S  
Sbjct: 1418 KAEGDLAAQKTEVNKLQDE--TNKNSANEKVNQLEELIKSLRKEQEK-----NTQSISAE 1470

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            K  +   +   + E   K L    DA+QK     
Sbjct: 1471 KTKNEKLIKKPLEE-SQKALDKANDAIQKSNDDS 1503



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 25/126 (19%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q A      + ++L      LK  +      V+++ +  ++ +    K K + N  +   
Sbjct: 781 QDAILDAKKKHDELDQ---ELKTEK----SLVDKLEKTLKEHESNLDKAKDEANNANTID 833

Query: 789 HKIADVNFMSHIISEVDSKELKSV---MDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
            K      +   I +++ K+LK +      L+ +     I       + K        +D
Sbjct: 834 EKKDKYPKLDKAIKDIE-KDLKELEEKAKGLKDQTNKDSI-------DSKI-------KD 878

Query: 846 LLDRFN 851
           L  + +
Sbjct: 879 LTKKLS 884



 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 33/177 (18%)

Query: 736 MGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH----- 789
               + L  ++  L  V    +   ++ +  + + L       + +LN   L        
Sbjct: 161 EDTQKLLAEISQALSEVPAAKLPLAIQSLINKLKNLANASEAMQEELNNSRLIEETKKLS 220

Query: 790 ----KIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
               +I D +N +   + +   +EL+ +    ++KI+            +KA   +   +
Sbjct: 221 DANLQIKDAINELQKRLLDKSPEELEKLA---KEKIKDL----------EKAKKAVEDAK 267

Query: 845 DLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPN--GNKADQAIAGVASFLKK 898
           ++    NA++ L +   +             A + G N    + D+AI    + LK+
Sbjct: 268 NISTLPNAIESLKKDLGQTKELK------DHANAKGLNDLVKELDKAIKDAENSLKQ 318



 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 20/169 (11%)

Query: 734 HLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           +L    +   LK+L S L+ +       ++E   + ++LQ   AK K   + + L     
Sbjct: 114 YLAELKKLPELKALTSELETTVNLAKESLKEAKAKLKELQEKEAKLKE--DTQKLLAE-- 169

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RF 850
                +S  +SEV + +L   + +L  K+++       + +E   S LI  T+ L D   
Sbjct: 170 -----ISQALSEVPAAKLPLAIQSLINKLKNLANASEAMQEELNNSRLIEETKKLSDANL 224

Query: 851 NAVDLARLSAKVLGGGGGGGRPH----MAQSGGPNGNKADQAIAGVASF 895
              D      K L        P     +A+    +  KA +A+    + 
Sbjct: 225 QIKDAINELQKRLLDKS----PEELEKLAKEKIKDLEKAKKAVEDAKNI 269


>gi|255543569|ref|XP_002512847.1| conserved hypothetical protein [Ricinus communis]
 gi|223547858|gb|EEF49350.1| conserved hypothetical protein [Ricinus communis]
          Length = 194

 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-LSCHKIADVN 795
            + E+ K +    +     +   +    +E RK +    K+K +  ++      KI +  
Sbjct: 107 EERERQKEIKKAYRERINELKEEIRRNKQEKRKQREEREKKKQENILKSGTKLQKITNPK 166

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQS 822
            +  I    D K LK V D L  + + 
Sbjct: 167 TLKKISKSKDRKLLKLVPDDLVNRNKK 193


>gi|217077692|ref|YP_002335410.1| hypothetical protein THA_1631 [Thermosipho africanus TCF52B]
 gi|217037547|gb|ACJ76069.1| hypothetical protein THA_1631 [Thermosipho africanus TCF52B]
          Length = 315

 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             +   +EKLK  A  LK     +   ++ I +E+++ ++     K+++        K+ 
Sbjct: 93  ELIKQSEEKLKE-AEKLKQENELLYKTLKSIEDEWKERKIKEEISKVEV------VKKVE 145

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +++ +  I    DSKEL  +M++ +  +++  ++ 
Sbjct: 146 NLDSLVEIFKNGDSKELLPLMNSEKVDVKTLAVVF 180


>gi|283780616|ref|YP_003371371.1| hypothetical protein Psta_2845 [Pirellula staleyi DSM 6068]
 gi|283439069|gb|ADB17511.1| hypothetical protein Psta_2845 [Pirellula staleyi DSM 6068]
          Length = 294

 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 49/120 (40%), Gaps = 13/120 (10%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           E+  +   +  S+ A  +R+E    + A+     + +  K++A+ LK +Q  ++   +++
Sbjct: 88  ELAAIRTQASESVAAATKRLE---QETAKKVAAIKADAEKAIAAQLKSAQDEMIASFKKL 144

Query: 764 W-EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             +  + L+   AK K               V   S  ++  +   +K  ++ L   ++ 
Sbjct: 145 QGDNSKSLEDALAKLK---------AENADAVKSSSTKLASDNEAAMKKAVEGLSGNVKD 195


>gi|118396556|ref|XP_001030617.1| hypothetical protein TTHERM_01054390 [Tetrahymena thermophila]
 gi|89284926|gb|EAR82954.1| hypothetical protein TTHERM_01054390 [Tetrahymena thermophila SB210]
          Length = 2020

 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
              +  Q E LK +   L      ++ + +++  E  +      + + +   + L+  ++ 
Sbjct: 1262 KEMKSQVESLKEVEKKLTKENEELLDQQKKLKAELTRANATIKELRNKTEQQQLNSEQLN 1321

Query: 793  DVN--------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            + N         +  + SEVD K+  + + +L+ K++S    L  +    K  V
Sbjct: 1322 ENNEQLEKSKEQLKKLKSEVDRKD--TSIKSLKNKLESATAELEELKGNSKNFV 1373


>gi|303233866|ref|ZP_07320518.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302495020|gb|EFL54774.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
          Length = 617

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q + L       +     +  ++E   +  +KL+   AK + ++  +D   +KI
Sbjct: 292 IKDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGKKLKQEKAKLEEEIRDKD---NKI 348

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 349 AQLNKEIEDLKNSNNDELIAEITQLKDELK 378



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/84 (10%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--------LNVEDLS 787
               +  K +      +   ++  + ++ +E ++LQ  +AK K             ++ +
Sbjct: 346 NKIAQLNKEIEDLKNSNNDELIAEITQLKDELKRLQDENAKLKEDYSSTKWELEAEKEKT 405

Query: 788 CHKIADVNFMSHIISEVDSKELKS 811
                 +  M   +  ++ +  K 
Sbjct: 406 DKNENKIKEMQEKLESLEGELAKK 429


>gi|270008016|gb|EFA04464.1| hypothetical protein TcasGA2_TC014768 [Tribolium castaneum]
          Length = 1968

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 18/139 (12%)

Query: 737  GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK------ 790
              D++ KSL   L   + ++  + + + +E + L+    K K +L        K      
Sbjct: 1306 ALDKENKSLKDELNKLKQDLASK-DALDKENKSLKDELNKLKQELAAAKQDTSKGDSDNE 1364

Query: 791  ----IADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                  DV  +      +  ++K LK  ++ L++++ +   +   +  + K        +
Sbjct: 1365 NKRLKDDVKNLKSENQSLKDENKSLKDELNKLKQELANRAGV---VQDDSKDKEFAKERD 1421

Query: 845  DLLDRFNAVDLARLSAKVL 863
            DLL +  A    +  A +L
Sbjct: 1422 DLLKQIAAQK--KEIADLL 1438



 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 44/100 (44%), Gaps = 13/100 (13%)

Query: 730  RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              +S L  +++ LK   + LK     +  +   + +E + L+    K K +L  +D    
Sbjct: 1254 AVKSALEIENKSLKDETNRLK---QELAAK-TGLEQENKSLKEDLNKLKQELASKDALDK 1309

Query: 790  K----IADVNFMSHIISEVDS-----KELKSVMDALQKKI 820
            +      ++N +   ++  D+     K LK  ++ L++++
Sbjct: 1310 ENKSLKDELNKLKQDLASKDALDKENKSLKDELNKLKQEL 1349


>gi|152991274|ref|YP_001356996.1| hypothetical protein NIS_1532 [Nitratiruptor sp. SB155-2]
 gi|151423135|dbj|BAF70639.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 332

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 46/109 (42%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +    H    +E + ++ +       ++  +VE++ EE +KL+    K K +L V + + 
Sbjct: 108 KNVEKHNGYLNESVDAIQNRDDERIEDLKNKVEQLEEENKKLKQEIEKSKKKLIVIEDAF 167

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            +         + +  +   LK  +  L++      ++++ I   KK +
Sbjct: 168 KQQEKEAVHDPLTNLYNRNALKKEIKLLEEASLPYSVIIIDIDDFKKIN 216


>gi|149180097|ref|ZP_01858602.1| hypothetical protein BSG1_03740 [Bacillus sp. SG-1]
 gi|148852289|gb|EDL66434.1| hypothetical protein BSG1_03740 [Bacillus sp. SG-1]
          Length = 538

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 20/107 (18%)

Query: 733 SHLMGQDEKLKSLASF-LKVSQGNVVGRVEEIWEEY-----------RKLQLIHAKRKLQ 780
             +    EK++ LA    K     +   + ++ +E            + L+      +L+
Sbjct: 172 KIMKETREKVEKLAKKKEKNRGEELEKELAQLQKELNESKTAEQSLKKLLEKERKAAELK 231

Query: 781 LNVE------DLSCHKIADVNF--MSHIISEVDSKELKSVMDALQKK 819
              E      +    + A  +   +S  + E+D K+L+  M+ L+ K
Sbjct: 232 KEAEMAEKTLNALSEEAAGSSLNELSKALKEMDQKKLQEAMEKLKNK 278


>gi|145520851|ref|XP_001446281.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413758|emb|CAK78884.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1564

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           L   ++++ +L + L+  Q  +  ++    ++ +  ++L+      K  +       + +
Sbjct: 682 LAKAEQQIDTLNNQLQNKQQELDNQIVLNAKLQDRIKELESELLNLKKTVQSLQDQINTL 741

Query: 792 -ADVNFMSHII------SEVDSKELKSVMDALQKKI 820
             D +     +       + + K L+ + D  ++K 
Sbjct: 742 KNDHHLQLQELREEILRKQEEIKALQKLADQYKEKY 777


>gi|289622081|emb|CBI51259.1| putative ZIP1 protein [Sordaria macrospora]
          Length = 4070

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%)

Query: 738  QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
              +++K +    K    N+  R+ +I  E ++ +    K+K QL  E  +     D    
Sbjct: 1389 HQKEIKKMTEEHKKKIENLEHRINDIKTELKQDRAEFDKKKAQLEGEVATLQGKVDDKSA 1448

Query: 798  SHIISEVDSKELKSVMDALQKKIQSGII 825
                 E +  ELK + +A   K++  + 
Sbjct: 1449 KLSAKEAEFDELKKLNEAELAKLKKDVA 1476



 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 736  MGQDEKLKSLASFLKVSQ---GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
               +  +K   + LK SQ    ++   V++  ++ + L++ +AK +  ++ +     KI 
Sbjct: 1988 KQLNADIKEKEATLKTSQSRANDLNWEVQQKKDQIKDLEIQNAKLQTDIDNKKAEIEKIK 2047

Query: 793  D----VNFMS----HIISEVDSKELKSV 812
            +    +N  +      +  +D+K LK +
Sbjct: 2048 EERKNLNIEADKSFARVQGLDAK-LKEL 2074


>gi|189198025|ref|XP_001935350.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981298|gb|EDU47924.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1367

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 40/189 (21%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVV--------------GRVEEIWEEYRKLQLIHAKRK 778
             +   +  LK     L   +  +                ++ E+    ++ Q      K
Sbjct: 758 KTIADLEASLKEAKDSLSSKESELEAAKGDVTKVTESSSSKIAELEASLKEAQESITAHK 817

Query: 779 LQLNVEDLSCHKI-----ADVNFMSHIISEVDSKELKSVMDALQKKIQ-----SGIIMLV 828
            +L        K       D   +   ISE+++  LK   D L  K          +   
Sbjct: 818 SELEAAKSEAKKAVESSKGDAEGLRSTISELEA-SLKEAKDGLAAKESELEAAKADVSQA 876

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             S   K + L    +   D   A +        LG          A++G     + +QA
Sbjct: 877 TESSGSKIAELEASLKAAQDSLAAKE------SELGAKS-------AEAG--KVTELEQA 921

Query: 889 IAGVASFLK 897
           +A   S L+
Sbjct: 922 LATAKSDLE 930



 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLN 782
            A+       E +  L + L+ ++G V         +V E+    ++ Q   A ++ +L 
Sbjct: 638 AAKKEAEELRETVAKLEAELEAAKGEVTKVSEASNAKVTELEGSLKEAQDSLAAKESELA 697

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                  K ++ +  +  ++E++   LK   ++L  K
Sbjct: 698 AAKEEVSKASEAS--ATKVAELEG-SLKEAQESLATK 731


>gi|324499717|gb|ADY39887.1| Laminin-like protein lam-2 [Ascaris suum]
          Length = 1663

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              + A   +    +K++ +   L          ++E+ ++  + + I     L+  VE L
Sbjct: 1553 AAKNANKTVSEASDKIRRIIDQLNSLDEVNSEELDELEKQVEEAEKILENADLEKQVEAL 1612

Query: 787  SCHKIADVNFMSHIISEVDSKEL--KSVMDALQKKIQSGIIMLVGISKEK 834
               K+     +S   +++D+ +L  +++ + ++  +      ++ + +E 
Sbjct: 1613 KQQKMEQDRKISQFKNDIDALQLEVRNL-EEIRNSLPDKCFNVINLEQEG 1661


>gi|167525483|ref|XP_001747076.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774371|gb|EDQ88000.1| predicted protein [Monosiga brevicollis MX1]
          Length = 355

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 21/143 (14%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRV 760
           + ++L +  E       +R       RA+  L    ++++ L   L      +V   GRV
Sbjct: 54  QALMLRLQHEEESHRETKRQL----SRAQDELKEAQDRIRDLECTLAAKSEEIVRLEGRV 109

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISEVDSK--ELKSVMDALQ 817
            E+  +    +      + +L     +   +  D   +   + E ++K   L+     L+
Sbjct: 110 TELRGKLLASEKTIDALQSELTAARKAIKGLQDDNKQVREELKESNAKIESLRDDNKQLR 169

Query: 818 KKIQSGIIMLVGISKEKKASVLI 840
           K++            E KA++  
Sbjct: 170 KEL-----------NEDKAAMAA 181


>gi|157826482|ref|YP_001495546.1| alanyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
 gi|157801786|gb|ABV78509.1| Alanyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
          Length = 71

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + ++  + D+FNA  +A+  +  LGG GGGG+P +AQ+GG +  K  +    + S L
Sbjct: 13  VAISNAITDKFNAGFIAKELSLFLGGSGGGGQPSIAQAGGSDLAKLPKVKDQLQSLL 69


>gi|288926990|ref|ZP_06420885.1| alpha-amylase family protein [Prevotella buccae D17]
 gi|288336236|gb|EFC74622.1| alpha-amylase family protein [Prevotella buccae D17]
          Length = 712

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 7/149 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+ +    H+A HLL+  +  + G   S+N + I     +         T  E K+I D
Sbjct: 567 HNKDEFPPAHTAEHLLNRLMMRMFGCERSRN-AHIERKKSKISYVLDHKPTRKEEKAIAD 625

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +N +IA++LPV   +++R+          L     +++R+V +   D        C G 
Sbjct: 626 EMNRLIAEDLPVTYEMVDRDHIPEGVTLDRLPDTAGEKLRLVRIGDYD-----VCPCIGK 680

Query: 698 HVSSTGEIMLLYIVSE-SSIRAGIRRIEA 725
           HV STG+I    ++           RI  
Sbjct: 681 HVRSTGQIGRFELLGTNWDQDTMTFRIRF 709


>gi|126333871|ref|XP_001362210.1| PREDICTED: similar to nuclear transcription factor, X-box binding 1,
            [Monodelphis domestica]
          Length = 1120

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 91/353 (25%), Gaps = 66/353 (18%)

Query: 503  EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIV 560
             E     K              G    +  C  G+         D      G  V    V
Sbjct: 701  NEICCVDKEHRCSLICGRKLNCGLHRCEEPCHRGNCQTCWQTSFDELTCFCGESVIFPPV 760

Query: 561  ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
              G    E     T      R    +H   H  H  +     ++++Q             
Sbjct: 761  PCGTKPPECKNTCT------RLHECDHPVFHSCHSEVKCPPCTYLTQKWCM---GKHEIR 811

Query: 621  VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
                  +T     S     N ++   +    RI ++ + +                   +
Sbjct: 812  YNIPCHLTEI---SCGLLCNQLLNCGMHKCKRICHKGECLIDEVCKQP----------CT 858

Query: 681  VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
            +   D      ALC   H S    +       E     G R+   +  +          +
Sbjct: 859  IARIDCNHPCMALC---HPSLPCPMSSCKAKVELQCECGRRKETMVCSEA-----SSTYQ 910

Query: 741  KLKSLASFLKVSQGNVVGRVE--EIW-------------EEYRKLQLIHAKRKLQLNVED 785
            ++ +++   K++   +   VE   +              EE   L+    +    LN+ +
Sbjct: 911  RIAAISMATKITDLQLGDSVEISNLITKKEIHETRLHCDEECLALERKR-RLAEALNISE 969

Query: 786  ----------------LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                            L      D+ F+S +  E + K L   ++  +   +S
Sbjct: 970  SSDPFNVRSGSRYSDSLKEDARKDLKFVSDV--EKEMKALVEAVNKGKNAKKS 1020


>gi|315608749|ref|ZP_07883727.1| alpha-amylase [Prevotella buccae ATCC 33574]
 gi|315249599|gb|EFU29610.1| alpha-amylase [Prevotella buccae ATCC 33574]
          Length = 712

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 7/149 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+ +    H+A HLL+  +  + G   S+N + I     +         T  E K+I D
Sbjct: 567 HNKDEFPPAHTAEHLLNRLMMRMFGCERSRN-AHIERKKSKISYVLDHKPTRKEEKAIAD 625

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +N +IA++LPV   +++R+          L     +++R+V +   D        C G 
Sbjct: 626 EMNRLIAEDLPVTYEMVDRDHIPEGVTLDRLPDTAGEKLRLVRIGDYD-----VCPCIGK 680

Query: 698 HVSSTGEIMLLYIVSE-SSIRAGIRRIEA 725
           HV STG+I    ++           RI  
Sbjct: 681 HVRSTGQIGRFELLGTNWDQDTMTFRIRF 709


>gi|242399248|ref|YP_002994672.1| SsDNA-specific exonuclease [Thermococcus sibiricus MM 739]
 gi|242265641|gb|ACS90323.1| SsDNA-specific exonuclease [Thermococcus sibiricus MM 739]
          Length = 476

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 25/149 (16%)

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI- 820
           ++ EEY+K Q+   K  +Q     +      D  ++ +       K +K  M  +   I 
Sbjct: 331 KLVEEYKKEQIEMRKYLIQNWNSAIE----KDHAYVFYA-----GKNIKDTMVGIAATIA 381

Query: 821 --------QSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGR 871
                   +  +++L    ++         T+  +   +N  +  R +A+VLGG GGG  
Sbjct: 382 INAQLTNPEKPVVVLADSEEDGLIKGSARTTKRGIEKGYNLGEALRRAAEVLGGEGGG-- 439

Query: 872 PHMAQSGGPNG--NKADQAIAGVASFLKK 898
              A + G     +K D+    +   L +
Sbjct: 440 --HAIAAGIRIPKDKLDEFTELIDKLLGQ 466


>gi|300727911|ref|ZP_07061289.1| alpha-amylase family protein [Prevotella bryantii B14]
 gi|299774753|gb|EFI71367.1| alpha-amylase family protein [Prevotella bryantii B14]
          Length = 719

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
               +  N+ +    H+A HLL+  +  + G   S N + I     +         +  E
Sbjct: 567 EYLFNEHNKDEFPPAHTAEHLLNQLMVRMFGCERSHN-AHIERKKSKISYILDHKPSRQE 625

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            K IE  +  +I  +L V   + +R D         L +   D VR+V +   D      
Sbjct: 626 EKEIERTMKQLIEDDLDVTYELKSRYDLPEGIQLDSLPSNAPDMVRLVRIGDYD-----V 680

Query: 692 ALCGGTHVSSTGEIMLLYIVSE-SSIRAGIRRIEA 725
             C G HV STG+I    ++      +  + RI  
Sbjct: 681 CPCIGKHVRSTGQIGKFVMLGTNWDEKTHVFRIRF 715


>gi|118375709|ref|XP_001021038.1| hypothetical protein TTHERM_00307640 [Tetrahymena thermophila]
 gi|89302805|gb|EAS00793.1| hypothetical protein TTHERM_00307640 [Tetrahymena thermophila
           SB210]
          Length = 1595

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 46/128 (35%), Gaps = 15/128 (11%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--RKLQLNVEDL 786
           +         ++ L  L   LK +      +V+++ +E   L+    +    L+   +++
Sbjct: 17  KSLLDASEKHNKNLSELIVILKKNIEEEKSKVQKLTKENVDLKKELQQKGLHLKKAEKEI 76

Query: 787 SCHKIAD------VNFMSHIIS----EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
              K  +      +  +   +     ++++  LKS +D       +  +    I    K+
Sbjct: 77  IAFKQNEQKQNGIIKGLQDNLEKYRLQLNNYFLKSKVDESSSTSINSAV---SIQNTDKS 133

Query: 837 SVLIVVTE 844
           S+    T+
Sbjct: 134 SITATNTQ 141


>gi|49425367|gb|AAT66048.1| rhabdomyosarcoma antigen MU-RMS-40.19 [Homo sapiens]
          Length = 820

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           L  ++ +LK L + LK  + ++  +   ++++ +E +  +    + K Q   +  S    
Sbjct: 398 LKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPH 457

Query: 792 AD-VNFMSHIISEVDS-----KELKSVM-------DALQKKIQSGIIMLVGISK--EKKA 836
            + +  +S    E+         LK  +       + L++K    +  L    K  + K 
Sbjct: 458 EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKV 517

Query: 837 SVLIVVTEDLLDRFNAVDL-ARLSAKVL 863
           +     +++   +  AV+L A+   K L
Sbjct: 518 N---KTSKERQQQVEAVELEAKEVLKKL 542


>gi|254171836|ref|ZP_04878512.1| ssDNA-specific exonuclease [Thermococcus sp. AM4]
 gi|214033732|gb|EEB74558.1| ssDNA-specific exonuclease [Thermococcus sp. AM4]
          Length = 476

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 66/195 (33%), Gaps = 51/195 (26%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQ---------GNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
             H   +   L +    L              +   + +++ ++Y++ Q+   K  +Q  
Sbjct: 291 VRHEAREFATLLNATGRLNAGTLGVAICLGDEDAYRKAKKMLDDYKREQIEARKFIIQ-- 348

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI---------QSGIIMLVGISKE 833
             + S  +  +  ++ +       K ++  +  +   I         +  ++++    ++
Sbjct: 349 --NWSMVEEGEHAYVFYA-----GKNIRDTLVGIAANIAINAGLADPEKPVVVIADSEED 401

Query: 834 KKASVLIVVT--EDLLDRFNAVDLARLSAKVLGGGGGG-----------GRPH------- 873
           +        T  + L   ++  +  R  A+ LGG GGG           GR         
Sbjct: 402 ESLVKASARTTEKALAKGYHLGEALREVAERLGGEGGGHAIAAGIRFPKGRIDEFIRLFN 461

Query: 874 --MA-Q-SGGPNGNK 884
             +A Q +GG +G  
Sbjct: 462 EVLAKQVAGGKDGEG 476


>gi|123474162|ref|XP_001320265.1| Dynein heavy chain family protein [Trichomonas vaginalis G3]
 gi|121903067|gb|EAY08042.1| Dynein heavy chain family protein [Trichomonas vaginalis G3]
          Length = 3926

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 54/179 (30%), Gaps = 38/179 (21%)

Query: 686  GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------GQ 738
             GV           ++ G+       +   +   +RR+  +T       +         +
Sbjct: 2443 NGVPVVEGIQEKLATAAGKCHTAVTTTADEMMQQVRRLYYVTPAAYIDFMKAFGTSLGKR 2502

Query: 739  DEKLKSLASFLKVSQGNVVGR------------------------VEEIWEEYRKLQLIH 774
             +KL+   S LK     +                           VE++ +E    + + 
Sbjct: 2503 QKKLEEEQSMLKRGVSKIEETNSVVGGMEQELVALKPQLEVHAVEVEKLLKELEGDKKVL 2562

Query: 775  AKRKLQLNVEDLSCHKIADVN--FMSHIISEVDS-----KELKSVMDALQKKIQSGIIM 826
             ++K  +  E +   K ADV     +   +E D+     K     ++ L+ K      +
Sbjct: 2563 EEKKATVETEKVEVQKKADVAEVLATKAAAERDAILPMLKSAMEAVELLKSKKGELAAV 2621


>gi|915306|gb|AAB50272.1| paramyosin-related protein [Onchocerca gibsoni]
          Length = 672

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           R      DE+++ +    K+    +  R+E + EE ++L+  + + K ++   +      
Sbjct: 463 RRAAEDADERIRKMDEETKIRISELTNRIEMLLEENKRLKDENDEMKNRIQDIE------ 516

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKI 820
            + N +   + E D   LK++ + +++++
Sbjct: 517 KEYNTIIRKLEEKD-NALKNL-ENIRQRL 543


>gi|254173158|ref|ZP_04879831.1| conserved hypothetical protein [Thermococcus sp. AM4]
 gi|214032567|gb|EEB73396.1| conserved hypothetical protein [Thermococcus sp. AM4]
          Length = 181

 Score = 42.8 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
               G  V  T E++    + E      ++ +E +        L  + EKLK     L+ 
Sbjct: 84  ETKAGQLVRETYELIKQGKLDEL-----VKNVEILAKGGQLVAL-EEYEKLKREKEELEA 137

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
               +  +V+ + EE R L+      +  L+       +I 
Sbjct: 138 KVKELEEKVKALEEENRALKAKLENVRKVLSDALDRIREIE 178


>gi|311264996|ref|XP_003130440.1| PREDICTED: nucleoprotein TPR-like [Sus scrofa]
          Length = 1064

 Score = 42.8 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 266 HNQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRMEEQMNGLKT 320

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  N+   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 321 SNENLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 378

Query: 810 KSVMDALQKKIQSG 823
              +D L K ++  
Sbjct: 379 TRAVDELHKLLKEA 392


>gi|56407655|gb|AAV88056.1| BdrC1-like protein [Borrelia hermsii]
          Length = 238

 Score = 42.8 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 42/95 (44%), Gaps = 11/95 (11%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              + K+ ++ + LK    ++  +++ +  E +        +     ++++     +D+ 
Sbjct: 78  NNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNK-----IDNVRNELKSDIK 132

Query: 796 FMSHIISEV------DSKELKSVMDALQKKIQSGI 824
            + + I  V      D K+L + +D ++ +++S I
Sbjct: 133 DLDNKIDNVRNELKSDIKDLDNKIDNVRNELKSDI 167



 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 732 RSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--- 787
             +L       L+ + + LK    ++  +++ + E    +++ + + +L+ +++DL    
Sbjct: 44  IEYLETTFNLKLEKVGASLKSDIKDLDNKIDTV-ENNLNIKIDNVRNELKSDIKDLDNKI 102

Query: 788 ----CHKIADVNFMSHIISEV------DSKELKSVMDALQKKIQSGI 824
                   +D+  + + I  V      D K+L + +D ++ +++S I
Sbjct: 103 DNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNKIDNVRNELKSDI 149



 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              +S +   D K+ ++ + LK    ++  +++ +  E +        +     ++++  
Sbjct: 89  NELKSDIKDLDNKIDNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNK-----IDNVRN 143

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              +D+  + + I  V   ELKS +  L  KI 
Sbjct: 144 ELKSDIKDLDNKIDNV-RNELKSDIKDLDNKID 175


>gi|241954840|ref|XP_002420141.1| ER to Golgi vesicle transport protein, putative; intracellular
            protein transport protein, putative [Candida dubliniensis
            CD36]
 gi|223643482|emb|CAX42361.1| ER to Golgi vesicle transport protein, putative [Candida dubliniensis
            CD36]
          Length = 2139

 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            T     + +  ++ KLKS    +K S  +    +  + E  + L+  + + K       L
Sbjct: 1691 TANEKLAEITQRESKLKSELETVKNSGLSTTSELAALTETVKSLEKENEELK------SL 1744

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            S +K  ++   +   +++  K LKS+ D L++K + 
Sbjct: 1745 SGNKTKELENYTKNYNDISGK-LKSLTDELKEKSKE 1779



 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
              ++   ++L+ L +    ++  +  +V ++  E + L      +K  +   D    +I 
Sbjct: 1820 KEIVKFSKELELLKNDDNDAKKELSEKVAKLESEIKTLSKELEDKKSIVKQYDDLKEQIK 1879

Query: 793  DVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            + +  +  + +E  + +LK  +D L+K +   +  
Sbjct: 1880 EKDEELQKVTNEQSAAKLK--LDELKKDLSGALAF 1912



 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 704  EIMLLYIVSESSIRAGIRRIEAITG--QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            E+     VSE         +EA+T         L  Q+ K   L   LK +  +   +++
Sbjct: 963  ELKKAKSVSEEETTKAKEELEALTTKIDNLEKELKEQESKKVELEGQLKNATDSTNEKIK 1022

Query: 762  EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             + +E   ++  + +  +Q +       K            ++D+K+ K + D L+ + +
Sbjct: 1023 GLEDELETIKKSNKEISMQNSELIQKLEKTE---------KDLDTKD-KEI-DKLRAETK 1071

Query: 822  SGI 824
            S I
Sbjct: 1072 SNI 1074


>gi|194760298|ref|XP_001962378.1| GF14469 [Drosophila ananassae]
 gi|190616075|gb|EDV31599.1| GF14469 [Drosophila ananassae]
          Length = 1896

 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 704  EIMLLYIVSESSIRAG-IRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            E  L     + ++  G ++R++ + G  +  + L  + ++    A  L     ++  +V+
Sbjct: 980  EEELQKCKQKLTLAEGDVQRLKLLNGTSSKVTDLEQKLKRSDEDAKKLNSKLKDLEDKVK 1039

Query: 762  EIWEEYRKLQL---------IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL--K 810
            +   + ++ +             K KL    +DL          +   I+++DS  L  K
Sbjct: 1040 KQDAQLKQSETNKSSLESQGKREKEKLATLEKDLEKQSKEKEK-LEAKITQLDSDLLSAK 1098

Query: 811  SVMDALQKKIQSGI 824
               D  +  ++  I
Sbjct: 1099 KAADKTKSSLEKEI 1112


>gi|238487306|ref|XP_002374891.1| filament-forming protein (Tpr/p270), putative [Aspergillus flavus
            NRRL3357]
 gi|220699770|gb|EED56109.1| filament-forming protein (Tpr/p270), putative [Aspergillus flavus
            NRRL3357]
          Length = 2032

 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 52/474 (10%), Positives = 138/474 (29%), Gaps = 59/474 (12%)

Query: 333  MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
            +     ++ +     +  L +E  R     +R L       + L     ++       + 
Sbjct: 1056 LRDEQGDVARRLEEQKSHLEAEITRLKDENERQLAAAQYHQADLKAQAEISQ------HA 1109

Query: 393  THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
                  ++++    A+ L  +   +    LE   SRA+A +        E+ W  LK++ 
Sbjct: 1110 QQNYESELVKHAEAAKNLQLVRSEANQLKLELVESRAQADTYKKDLTQKEESWNELKDR- 1168

Query: 453  GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
                   Y+        + +  +            +++ + A+ +    + E     +  
Sbjct: 1169 -------YESELSELQKRREEVLHQNSLLHSQLENITNQISALQRDRANIAETEDEAE-- 1219

Query: 513  VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
                                   G    ++    +K+   +  H +  E   LR ++   
Sbjct: 1220 ----------------SSAPNLEGLQEVIKFLRREKEIVDVQYHLSTQESKRLRQQLEYT 1263

Query: 573  LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +   + R +L     A              H + + + +       ++     +T    
Sbjct: 1264 QSQLDEARLKLEQQRRAA---------ADSEHTALSHNKLMETLNELNLFRESSVTLRNQ 1314

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
                +      +  +  + + M   +         +    +  ++++  + +     +  
Sbjct: 1315 VKQAETALSEKSARVDELVQQMEPLETRIRE-LENVVETKDGEMKLLQADRDRWQQRTQN 1373

Query: 693  LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR--------SHLMGQDEKLKS 744
            +          E+  L    E   +    R EA++ +             L   +E+++ 
Sbjct: 1374 ILQKYDRVDPAEMEGLKEKLEILQKE---RDEAVSSRDTLQEQAAAFPEQLKHAEERVQE 1430

Query: 745  LASFL----KVSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLNVEDLSCHKIA 792
            L + L    K     + GR+     E      +    + +L+   E+LS  K  
Sbjct: 1431 LRAKLTEQFKARSKELTGRINAKQLELNTVVQEKEVIQEELKTTKEELSGLKAK 1484


>gi|6606247|gb|AAF19138.1|AF143472_1 BdrC5 [Borrelia hermsii]
          Length = 260

 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 55/105 (52%), Gaps = 9/105 (8%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            G   +S +   D K+ ++ + LK    ++  +++ + E    +++ + + +L+ +++DL
Sbjct: 58  VGASLKSDIKDLDNKIDNVRNELKSDIKDLDNKIDTV-ENNLNIKIDNVRNELKSDIKDL 116

Query: 787 SCHKIADV-NFMSHIISEV------DSKELKSVMDALQKKIQSGI 824
             +KI  V N ++  I  V      D K+L + +D ++ +++S I
Sbjct: 117 D-NKIDTVENNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDI 160


>gi|262373319|ref|ZP_06066598.1| chromosome segregation protein SMC [Acinetobacter junii SH205]
 gi|262313344|gb|EEY94429.1| chromosome segregation protein SMC [Acinetobacter junii SH205]
          Length = 1149

 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKI 791
             +  Q E+ +      K  + + + +++E+  E    L +   + + +L        KI
Sbjct: 886 EQVREQLEQKRLAWQAAKSDREHYLEQLKELNSEPVSDLSIEIKEHQQKLEKAQQQFEKI 945

Query: 792 ADVNF--------MSHIISEVD--SKELKSVMDALQKKIQS 822
             VN         +S    E+    ++L++ +D L+  ++S
Sbjct: 946 GAVNLAASQEYEEVSQRFDELSHQMQDLQNTVDQLKDAMKS 986


>gi|209878017|ref|XP_002140450.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209556056|gb|EEA06101.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 1954

 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 43/442 (9%), Positives = 126/442 (28%), Gaps = 27/442 (6%)

Query: 397  PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            P  I       R        +     +                   K  ++        +
Sbjct: 662  PYKINILKSHNRNKHETHKDTEEFPSQVLEEEIITFVPSGKKSHLAKDKYNFSNLLKEER 721

Query: 457  FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               +  L         +++  +     + N    + K +  + +  E+  S  K  +   
Sbjct: 722  LKRFHKLLRKTIESRLKRIESKNNKKIVNNETERLKKLLDDERKYREKLESEYKNNL--- 778

Query: 517  QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
                  E   ++ D      + IR ++ D  +K +             +   +++  +  
Sbjct: 779  ------EEHAKIMDILKNNQEKIRNKMKDENEKEKARLRGEMNQSMEQMEVALNVASSAI 832

Query: 577  YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH------SKPITSA 630
                +Q    ++    L      I      ++      +   F+         ++  +  
Sbjct: 833  GDLEKQNEFLNNKLKNLDEENKMIRMMINMRDNYMKELEKNHFEAETKQQKQLNEMKSIY 892

Query: 631  ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            E +  +   N      +     ++   +  A      +        ++            
Sbjct: 893  EKQLKDLKSNIENNDPITGFKNMVENLEIEAQTQLNRIDDTQVSENKIKEAINHRIRERE 952

Query: 691  SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ--RARSHLMGQDEKLKSLASF 748
              L          ++  L  + +   + G    E +  +       L  + E+L++    
Sbjct: 953  KQLELAYQRQKRRDVEYLGYILQLLEQKGTMNAEKVANELKDRIMQLEDKQEELQNTREE 1012

Query: 749  LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-------LNVEDLSCHKIADV-NFMSHI 800
            L++   +++ +VE+  E+ ++L       K+Q       L +  +  + + DV   +   
Sbjct: 1013 LEIVNNDLIQKVEQQHEKIKELMKQVEDMKIQRNTAHEELKLAKIKLNDVEDVEKILKRK 1072

Query: 801  ISEVDSKEL--KSVMDALQKKI 820
            +  ++S       +++ L+K +
Sbjct: 1073 MENIESSGAPSDEILEYLKKAL 1094


>gi|206577644|ref|YP_002237642.1| threonyl and alanyl tRNA synthetase domain protein [Klebsiella
           pneumoniae 342]
 gi|206566702|gb|ACI08478.1| threonyl and alanyl tRNA synthetase domain protein [Klebsiella
           pneumoniae 342]
          Length = 245

 Score = 42.8 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 73/229 (31%), Gaps = 31/229 (13%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---------AIGDGIRLQITDVQKKAEGIF 554
                     V  QT FY + GGQLGD G              G+       ++    + 
Sbjct: 30  NLDESNSPYCVLSQTIFYPQGGGQLGDRGYLVLPNMLTSQQKMGVITTKRKDEEIRHYLD 89

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           ++    +    +    +   +D+  R      HSA HL+H  L  + G  +         
Sbjct: 90  INEIGFDLLKKQAGQQVTAILDWDLRYHQMRIHSAVHLIHCILEQVTGHSI--------- 140

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
                      P+     ++    ++ I    L   T  +N   +       +   +  +
Sbjct: 141 -----PYPVRSPLNDESGENHYQLLDYIDEDILEKATTELNEFCSSGHAIQTVNVPEQGN 195

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             R+            S  CGGTHV  T EI +++      I+  + RI
Sbjct: 196 NFRIWKCG------RWSIPCGGTHVKDTKEIGMIFSTL--KIKKNMTRI 236


>gi|19113921|ref|NP_593009.1| sporulation protein Spo15 [Schizosaccharomyces pombe 972h-]
 gi|1723492|sp|Q10411|SPO15_SCHPO RecName: Full=Sporulation-specific protein 15
 gi|1256517|emb|CAA94624.1| sporulation protein Spo15 [Schizosaccharomyces pombe]
          Length = 1957

 Score = 42.8 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA-----KRKLQLNVEDL 786
              L  +    +   S L     ++  ++ ++ E  + L          ++ +Q   EDL
Sbjct: 639 LQQLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKEDL 698

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              +       +   S++++K L+ V+D L+ K +
Sbjct: 699 RKSEE------ALRFSKLEAKNLREVIDNLKGKHE 727


>gi|289192266|ref|YP_003458207.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
           FS406-22]
 gi|288938716|gb|ADC69471.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
           FS406-22]
          Length = 903

 Score = 42.8 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 5/172 (2%)

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
               + TR MN  + ++    A     Y     + ++  E   +      G        E
Sbjct: 628 DIFKIHTRAMNLAEDVSLEELAKKTEGYTG-ADIEALCREAAMLAVRESIGKP---WGIE 683

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
             L  +++     +G  R  A+           ++       S LK + G ++  +    
Sbjct: 684 TALRDLINYLQSISGTFRGAAVELNSVIKATKERESAEAGEFSELKNAIGKIISVLAPAK 743

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           E+   ++    K    +N EDL   +  + N ++  + ++  K LK ++D +
Sbjct: 744 EKIEAVEKEVDKFLEIINKEDLKPSEKDEANKLAKYLKDILGK-LKEMIDNI 794


>gi|121609583|ref|YP_997390.1| phosphotransferase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121554223|gb|ABM58372.1| PHP N-terminal domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 929

 Score = 42.8 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 17/162 (10%)

Query: 726 ITGQRARSHLMGQDEKL---KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           ++  +A + L  + ++L         +K  +  +  ++E       KL     +   Q  
Sbjct: 613 VSDPQAFARLTQEKQQLETQHKALQKMKSDRQELAKQIEAQQ----KLLAEKRQSITQAR 668

Query: 783 VEDLSCHKIADVNFMSHIIS-EVDSK----ELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
              +      +      +       +    EL+ ++D    + +  I+ +         +
Sbjct: 669 QSFIRSALTNNTQVRIAVAPFGFGPRQIERELRELIDVTDNRFEDDILKVENGEPSGGMA 728

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP-HMAQSG 878
             +   +D   +  AV  A+   + L G  GGG P  +A  G
Sbjct: 729 FTLARADDA-GKVAAVTAAK---QQLLGVLGGGAPDDLALGG 766


>gi|149726595|ref|XP_001497583.1| PREDICTED: similar to RUN and FYVE domain-containing protein 1
           (FYVE-finger protein EIP1) (Zinc finger FYVE
           domain-containing protein 12) (La-binding protein 1)
           (Rab4-interacting protein) [Equus caballus]
          Length = 600

 Score = 42.8 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCH 789
           A       +E+ ++L   L    G +  ++  + E+   L+      K Q   ++    H
Sbjct: 400 AERARQRAEERSRTLQQELGARSGALQQQLCRLQEQCSSLEKELKSEKEQRQALQQELQH 459

Query: 790 KIADVNFMSHIISEVDS--KELKSVMDALQKKIQS 822
           +    + +   + +V+   KEL+ + D  + ++Q 
Sbjct: 460 EKDTSSLLRAELQQVEGLEKELRELQDE-KAELQK 493


>gi|58697307|ref|ZP_00372668.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536326|gb|EAL59814.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 481

 Score = 42.8 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 23/56 (41%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +L  + + L+ +   L  S   +  +V+++ +E +     + + K +L        
Sbjct: 148 YLEQKLKGLEKMNESLNNSVQELEKKVDKLEKENKDFLAENDELKEKLATAKEEKE 203


>gi|58699184|ref|ZP_00373999.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534300|gb|EAL58484.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 504

 Score = 42.8 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 23/56 (41%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +L  + + L+ +   L  S   +  +V+++ +E +     + + K +L        
Sbjct: 171 YLEQKLKGLEKMNESLNNSVQELEKKVDKLEKENKDFLAENDELKEKLATAKEEKE 226


>gi|312372208|gb|EFR20221.1| hypothetical protein AND_20465 [Anopheles darlingi]
          Length = 509

 Score = 42.8 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 713 ESSIRAGIRRIEAITGQRA--RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
                   RR+E  T + A    +   Q+ +   ++              ++  +E ++L
Sbjct: 127 WEENEDLKRRLERKTKEAADAERNGRAQEARANEISGKYNTLLSEH----KKTKDEQKEL 182

Query: 771 QLIHAKRKLQLNVEDLSCHK 790
           +   AK K QL+    +  +
Sbjct: 183 EKELAKLKKQLDTARKNLEE 202


>gi|145549073|ref|XP_001460216.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428045|emb|CAK92819.1| unnamed protein product [Paramecium tetraurelia]
          Length = 446

 Score = 42.8 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           +++  Q++     +         +  +V+   E  +KLQ+   + K QL   +    KI 
Sbjct: 158 NYIGRQED-----SELPSDQSKELAVQVKREQENNKKLQIELQQTKDQLQNINKEVEKIM 212

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               +  II + + K+L+  ++ L+K+    
Sbjct: 213 QYQLL--IIRQQNQKDLEKKINDLKKQYHED 241


>gi|123407834|ref|XP_001303085.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121884435|gb|EAX90155.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 1165

 Score = 42.8 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 12/130 (9%)

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------GQDEKLKSLASFLKVSQ 753
            S   +      ++     GI +I  +T +  + +         ++ KLK   S LK + 
Sbjct: 64  ESISILESTKKYTKIEFVDGIIKILYLTNKELKRYANLVREIMKENNKLKKENSELKKTN 123

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSV 812
             +    +E+ EE  +L+  +   K    V      K   ++N +        + +LK  
Sbjct: 124 DGLKKENDELKEENDRLKKENDALKNGCGVLKEENEKSNIEINNLKKT-----NHDLKEE 178

Query: 813 MDALQKKIQS 822
            D  +K+I  
Sbjct: 179 NDRFKKEIND 188


>gi|297588635|ref|ZP_06947278.1| possible chimeric erythrocyte-binding protein [Finegoldia magna
           ATCC 53516]
 gi|297574008|gb|EFH92729.1| possible chimeric erythrocyte-binding protein [Finegoldia magna
           ATCC 53516]
          Length = 399

 Score = 42.8 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +KI
Sbjct: 305 IKDLENQIKDLNDKKQEDQTKIDELKEKLESCKDNGEKLKQEKAKLEEEIRDKD---NKI 361

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 362 AQLNKEIEELKNSNNDELIAEITQLKDELK 391


>gi|255655061|ref|ZP_05400470.1| exonuclease subunit C [Clostridium difficile QCD-23m63]
 gi|296451048|ref|ZP_06892790.1| ATPase [Clostridium difficile NAP08]
 gi|296880599|ref|ZP_06904561.1| ATPase [Clostridium difficile NAP07]
 gi|296260055|gb|EFH06908.1| ATPase [Clostridium difficile NAP08]
 gi|296428553|gb|EFH14438.1| ATPase [Clostridium difficile NAP07]
          Length = 1175

 Score = 42.8 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 728 GQRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G++ +     Q + LK L S L         V   + +   E + L+        + N  
Sbjct: 182 GEKVKKRKNLQLQSLKDLKSKLSQYDGITEEVYNNINQELIELKNLEKD------KNNAL 235

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQK-KIQSGIIMLVGISKEKKASVLIVVT 843
           DL+ +   +   +     +++  EL+     L+  +I+  I ++   S  KK    I   
Sbjct: 236 DLAQNSYEESKTVYEEQLKLEKNELRKNELDLKNGEIKEKIALVENDSNAKKVDPYIGSV 295

Query: 844 EDLLDRFN 851
           ++L  + +
Sbjct: 296 QNLEKKID 303


>gi|193216543|ref|YP_001999785.1| massive surface protein MspI [Mycoplasma arthritidis 158L3-1]
 gi|193001866|gb|ACF07081.1| massive surface protein MspI [Mycoplasma arthritidis 158L3-1]
          Length = 2416

 Score = 42.8 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            + A   L    +KL      LK    N+  ++ +  EE  + Q   A  K Q    + + 
Sbjct: 941  KEAEDALKDAHKKLNEEKDKLKGDAQNL-EKITKKLEEIDQKQQDLADAKKQQEQSEETR 999

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             K      ++    ++ + EL++++  L++KI+
Sbjct: 1000 AKE-----LAEQAKKLQT-ELENLVKELKEKIK 1026


>gi|326679113|ref|XP_692838.5| PREDICTED: laminin subunit beta-1 [Danio rerio]
          Length = 1779

 Score = 42.8 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 35/180 (19%)

Query: 730  RARSHLMGQDEKLKSLASF---LKVSQGNVVGRVEEIWE----EYRKLQLIHAKRKLQLN 782
                 L    +KL+ +A+    +K      + + +   +      + L+    K K  LN
Sbjct: 1446 AVSEELQTMAKKLRDIATLTQTVKTQAKETLDKAQNKKDMFEKSNKMLKNFIQKIKDFLN 1505

Query: 783  VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             E      I  V   +  +  +     ++V+  L ++I+  I+ L  +        +   
Sbjct: 1506 EEGADPESIEKV---AQQVLAISLPVNRTVIVNLVEQIKDSIVNLTNVEG------VFNH 1556

Query: 843  TEDLLDRFNAVDLARLS--AKVLGGGGGGGRPHMAQSGG--PNGNKADQAIAGVASFLKK 898
            T + L + N  DL + +  AK              Q+ G   N NK  +A+    + +KK
Sbjct: 1557 TSEQLAKVN--DLLKKAQDAKT-------------QADGVSDNINKTKEALETSQNAIKK 1601


>gi|220675880|emb|CAX12738.1| novel protein similar to vertebrate laminin beta family [Danio rerio]
          Length = 1779

 Score = 42.8 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 35/180 (19%)

Query: 730  RARSHLMGQDEKLKSLASF---LKVSQGNVVGRVEEIWE----EYRKLQLIHAKRKLQLN 782
                 L    +KL+ +A+    +K      + + +   +      + L+    K K  LN
Sbjct: 1446 AVSEELQTMAKKLRDIATLTQTVKTQAKETLDKAQNKKDMFEKSNKMLKNFIQKIKDFLN 1505

Query: 783  VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             E      I  V   +  +  +     ++V+  L ++I+  I+ L  +        +   
Sbjct: 1506 EEGADPESIEKV---AQQVLAISLPVNRTVIVNLVEQIKDSIVNLTNVEG------VFNH 1556

Query: 843  TEDLLDRFNAVDLARLS--AKVLGGGGGGGRPHMAQSGG--PNGNKADQAIAGVASFLKK 898
            T + L + N  DL + +  AK              Q+ G   N NK  +A+    + +KK
Sbjct: 1557 TSEQLAKVN--DLLKKAQDAKT-------------QADGVSDNINKTKEALETSQNAIKK 1601


>gi|225679635|gb|EEH17919.1| heat shock protein [Paracoccidioides brasiliensis Pb03]
 gi|226291369|gb|EEH46797.1| heat shock protein [Paracoccidioides brasiliensis Pb18]
          Length = 795

 Score = 42.8 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 7/124 (5%)

Query: 743 KSLASFLKVSQGNVVG------RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
           + L   LK  Q  V        + +   +  ++ +    + ++ L       +       
Sbjct: 366 EKLEELLKTKQDKVKEFTDVWEKEKAELDAIKQAKEDLERARVDLEQAQREGNFAKASEL 425

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLV-GISKEKKASVLIVVTEDLLDRFNAVDL 855
              II ++++K  K   D        G+++L   ++ +  A V+   T   +++  A ++
Sbjct: 426 RYSIIPKLENKLPKEGSDTATSTTADGVVLLHDSVTSDDIAGVVSRTTGIPVNKLMAGEV 485

Query: 856 ARLS 859
            +L 
Sbjct: 486 EKLI 489


>gi|255652588|ref|ZP_05399490.1| hypothetical protein CdifQCD_20566 [Clostridium difficile QCD-37x79]
          Length = 2032

 Score = 42.8 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 32/145 (22%)

Query: 739  DEKLKSLASFLKVSQGNVVGRVE----------------EIWEEYRKLQLIHAKRKLQLN 782
             +KLK L   LK  Q  +   V+                 + EE  KL+    K+    N
Sbjct: 1833 QKKLKDLQKQLKEEQKKLQDLVQDHVDDQVNDMYDKESDRLQEEADKLKEELEKKYSDEN 1892

Query: 783  VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS--------KEK 834
            + DL    I+   F+     + + K+L+  +     K +SG++ +  ++        KE 
Sbjct: 1893 LVDLINEAISSGKFVGL---DGEVKKLQDAIIEYINKYESGMLAMGSVTKQEWLDRLKEG 1949

Query: 835  KASVLIVVTEDLLDRFNAVDLARLS 859
            K ++     ED+ D  + +DL++ +
Sbjct: 1950 KETL-----EDINDILDELDLSKFA 1969


>gi|331219599|ref|XP_003322476.1| hypothetical protein PGTG_04013 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309301466|gb|EFP78057.1| hypothetical protein PGTG_04013 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1855

 Score = 42.8 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 54/135 (40%), Gaps = 16/135 (11%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQ----GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            + A S        +K L   L++ Q      +  +  E+  +   L+   ++ +  L  +
Sbjct: 1297 EAAISTQKEHLATVKELEETLQIQQVDSKAELENKEAELASQRDNLEKQLSELQESLEQK 1356

Query: 785  DLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSG----IIMLVGISKEKKASVL 839
                 ++ D V+ ++  I E +    + + +  + K+        ++      ++K  VL
Sbjct: 1357 SALNMQLQDSVSVLTARIQE-EQDAHRKIQEDSKAKLSEALEHRAVV------DEKHQVL 1409

Query: 840  IVVTEDLLDRFNAVD 854
                ++LL++  A++
Sbjct: 1410 QSQVKELLEKTKALE 1424


>gi|225630316|ref|YP_002727107.1| hypothetical protein WRi_005360 [Wolbachia sp. wRi]
 gi|225630710|ref|YP_002727501.1| hypothetical protein WRi_010020 [Wolbachia sp. wRi]
 gi|225592297|gb|ACN95316.1| hypothetical protein WRi_005360 [Wolbachia sp. wRi]
 gi|225592691|gb|ACN95710.1| hypothetical protein WRi_010020 [Wolbachia sp. wRi]
          Length = 809

 Score = 42.4 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 23/56 (41%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +L  + + L+ +   L  S   +  +V+++ +E +     + + K +L        
Sbjct: 476 YLEQKLKGLEKMNESLNNSVQELEKKVDKLEKENKDFLAENDELKEKLATAKEEKE 531


>gi|190345018|gb|EDK36825.2| hypothetical protein PGUG_00923 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 811

 Score = 42.4 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 13/104 (12%)

Query: 723 IEAITGQRARS--HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           IEA      +    +     ++  +   L+    ++  R+E + E   +        K +
Sbjct: 425 IEASFNDAVQKGNEVEQTLREVSEVKEQLETKIASLASRIETLKESEEQKTKEILDLKRE 484

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  ++         N +  + S V SK     +  L+ ++ S +
Sbjct: 485 LGSKE---------NIIRELKSSVGSKS--ETVKGLKSELGSKV 517


>gi|118350102|ref|XP_001008332.1| hypothetical protein TTHERM_00013530 [Tetrahymena thermophila]
 gi|89290099|gb|EAR88087.1| hypothetical protein TTHERM_00013530 [Tetrahymena thermophila
           SB210]
          Length = 819

 Score = 42.4 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 44/106 (41%), Gaps = 12/106 (11%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN------- 782
           +  + L  + + +  + + L   Q ++  R  E+ +E +     +    LQ+        
Sbjct: 496 KVLNALEEKTDLM-EVQNALNACQSDISQRFLELKDEIKNYIGENEANLLQILDKKANFV 554

Query: 783 -VEDLSCHKIADVNF---MSHIISEVDSKELKSVMDALQKKIQSGI 824
            V+     K  + N    ++  +S  + +E++ +++ + K+ +  +
Sbjct: 555 DVQQALSQKADNTNVLNLIATKVSSQEIEEMRKMVEKVFKECEDKV 600


>gi|62327100|ref|YP_223888.1| putative scaffold protein [Lactobacillus phage phiJL-1]
 gi|37930117|gb|AAP74515.1| putative scaffold protein [Lactobacillus phage phiJL-1]
          Length = 184

 Score = 42.4 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++A      +  KL  ++         +    ++  EE+++ +    KR+L  + +DL  
Sbjct: 58  KQAIEDAKNEGAKLAKMSEA-----DKLAEEQKQREEEFKQREAELNKRELSYSTKDLLS 112

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +    +    +++  D+  +K+V++ L+  + S +
Sbjct: 113 EQGLPTDMADSLVALGDADAIKNVVETLKASVDSAV 148


>gi|237755688|ref|ZP_04584297.1| translation initiation factor IF-2 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692138|gb|EEP61137.1| translation initiation factor IF-2 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 601

 Score = 42.4 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 13/113 (11%)

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            R  +   E RKL+        +  +   +  ++ +VN +    ++   + L+  ++ L 
Sbjct: 364 EREAKQLAEIRKLRREEELLAKKTRIHLENLSEVKEVNIIIKADTQGSLEALRKSIEELS 423

Query: 818 KKIQSGII-----MLVGISKEKKASVLIVVTEDLLDRFN----AVDLARLSAK 861
            K     I      + GI++     +L   +  ++  FN    A   AR +A+
Sbjct: 424 NKFSEVSINIIHGAVGGITESD--VMLAAASNAIIIGFNVRPDAG--ARKAAE 472


>gi|70605899|ref|YP_254769.1| hypothetical protein Saci_0046 [Sulfolobus acidocaldarius DSM 639]
 gi|68566547|gb|AAY79476.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 581

 Score = 42.4 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLAS---FLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-- 777
           IEA    R    L  Q + L+        ++    ++  R+EE+ +    L+L   +   
Sbjct: 363 IEASVINRTIEALQKQLKSLEERVESTYEVESKDNDIDKRIEELRKRRSDLELQLQQLGI 422

Query: 778 -KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
            K      +    +I D+N     I +++ + ++ +
Sbjct: 423 PKKVAEEIESLKKQIDDIN---KQIDDINREYIRRL 455


>gi|119485182|ref|ZP_01619567.1| threonyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119457410|gb|EAW38535.1| threonyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 608

 Score = 42.4 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 73/195 (37%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  II + 
Sbjct: 32  HTASHIMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFTEKDLKAIQKEMAKIIKRK 90

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVSSTG 703
           LPVV   ++RE+A        LG  Y   +       +     G     LC G HV +T 
Sbjct: 91  LPVVREELSREEA--KRRIEELGEPYKLEILEGLEDPITIYYLGDGWWDLCAGPHVENTA 148

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           +I    I  ES   A   R     G   ++ L                +   +      +
Sbjct: 149 DIHPKAIELESLAGA-YWR-----GDETKAQLQRIYGTAWE-------TPEQLAEYKRRK 195

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++RKL    
Sbjct: 196 EEALKRDHRKLGKEL 210


>gi|332023831|gb|EGI64055.1| Spindle assembly abnormal protein 6-like protein [Acromyrmex
           echinatior]
          Length = 673

 Score = 42.4 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL----QLNVEDLSC 788
             L  +D +L+   + LK     +V   E + +   +L    +K KL     L  E L  
Sbjct: 377 DLLTERDSQLQRKQNSLKSLSDELVKANEILTKLQNELASTKSKLKLRTSIALEQERLLD 436

Query: 789 HKIADVNFMSHIISEV--DSKELKSVMDALQKKIQ 821
            K  +V  +   +  +  D+++ KS +D L+++I+
Sbjct: 437 SKQKEVGQLEIKMEGLFKDARDAKSEVDNLKEQIK 471


>gi|118380845|ref|XP_001023585.1| hypothetical protein TTHERM_00693200 [Tetrahymena thermophila]
 gi|89305352|gb|EAS03340.1| hypothetical protein TTHERM_00693200 [Tetrahymena thermophila
           SB210]
          Length = 1499

 Score = 42.4 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 36/92 (39%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
             +L   +  L       K  +  +  ++++  +E  K ++   K+K +L        K 
Sbjct: 287 LENLQKMNAILNEEIKNYKEERRLLNEKLQQQKDEQSKTKIELQKKKEELLKATDEIQKY 346

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            D  F +   ++ +  EL+   D + K+ +  
Sbjct: 347 RDDAFRNKEDAQRNKDELRRNTDYISKQDEET 378


>gi|15895140|ref|NP_348489.1| site-specific recombinase [Clostridium acetobutylicum ATCC 824]
 gi|15024843|gb|AAK79829.1|AE007695_2 Site-specific recombinases, DNA invertase Pin homolog [Clostridium
           acetobutylicum ATCC 824]
 gi|325509279|gb|ADZ20915.1| Site-specific recombinase [Clostridium acetobutylicum EA 2018]
          Length = 526

 Score = 42.4 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLIHAKRKLQLN---VE 784
           +         +  L +L+     +    ++ ++ ++ EE  KL+      K         
Sbjct: 412 KELLQKRKQMNALLNNLSKVSNTNSSEFILSKINKLGEEITKLENKLNNLKNSKQCDFNS 471

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           ++    + D      ++  +++K  + +++A+ +KI+
Sbjct: 472 EILISSLDDFKTTFKLLDTINAK--RCMLEAIIEKIE 506


>gi|238489105|ref|XP_002375790.1| intracellular protein transport protein (UsoA), putative [Aspergillus
            flavus NRRL3357]
 gi|220698178|gb|EED54518.1| intracellular protein transport protein (UsoA), putative [Aspergillus
            flavus NRRL3357]
          Length = 1217

 Score = 42.4 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 714  SSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVGRVEEIWEEYRKLQL 772
              +++  +R E  T + ++S     +   K L  + L+V +     +      E  +LQ 
Sbjct: 1052 EKVKSEAKRTEDATRKSSKSTKSEAEGLRKELEKAKLEVKEKEAARK--STQTEITELQR 1109

Query: 773  IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
               K KL+   +     K  +   ++   ++ +  EL+  ++ L+ +++ 
Sbjct: 1110 ELEKVKLEAKDQAEEARKAKENESVAQKSTQ-EIDELRKELEKLKSEVKE 1158



 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 729  QRARSHLMGQDEKLKS----LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            Q AR  L     ++K          K     +   +E++  E +K +   A  K   +  
Sbjct: 958  QEARERLKKAQSEVKEKEAAARKSAKSEAEGLRKELEKVRSEAKKAE--EAALKSANSEI 1015

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +    ++  V   +    +   K  +S  D L+K+++ 
Sbjct: 1016 EGLRKELEQVRSEAKNAEDAARKSAQSEADKLRKELEK 1053


>gi|56550527|dbj|BAD77934.1| AousoA [Aspergillus oryzae]
          Length = 1216

 Score = 42.4 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 714  SSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVGRVEEIWEEYRKLQL 772
              +++  +R E  T + ++S     +   K L  + L+V +     +      E  +LQ 
Sbjct: 1052 EKVKSEAKRTEDATRKSSKSTKSEAEGLRKELEKAKLEVKEKEAARK--STQTEITELQR 1109

Query: 773  IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
               K KL+   +     K  +   ++   ++ +  EL+  ++ L+ +++ 
Sbjct: 1110 ELEKVKLEAKDQAEEARKAKENESVAQKSTQ-EIDELRKELEKLKSEVKE 1158



 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 729  QRARSHLMGQDEKLKS----LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            Q AR  L     ++K          K     +   +E++  E +K +   A  K   +  
Sbjct: 958  QEARERLKKAQSEVKEKEAAARKSAKSEAEGLRKELEKVRSEAKKAE--EAALKSANSEI 1015

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +    ++  V   +    +   K  +S  D L+K+++ 
Sbjct: 1016 EGLRKELEQVRSEAKNAEDAARKSAQSEADKLRKELEK 1053


>gi|291244243|ref|XP_002742009.1| PREDICTED: kinesin family member 3B-like [Saccoglossus kowalevskii]
          Length = 1333

 Score = 42.4 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +R        +E  + L     + +  ++ + E I +E  K +L   K +    +     
Sbjct: 955  ERVLERKRKIEEFEEEL-----IKREEIIKKKESILKE--KSELEIKKLRSSQVLSKDIL 1007

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
                 +N +   I +    EL+  MD  + ++ + +
Sbjct: 1008 GLANKINIVEKKIEDKSI-ELRQSMDVQKDQLATDV 1042


>gi|123500850|ref|XP_001327941.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121910878|gb|EAY15718.1| Leucine Rich Repeat family protein [Trichomonas vaginalis G3]
          Length = 699

 Score = 42.4 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 69/194 (35%), Gaps = 43/194 (22%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSL---ASFLKVSQGNVVGRVEEIWEEY----RKLQLIH 774
           R + +  Q +   L  ++  LKSL    + LK    ++   +  + EE     + L    
Sbjct: 489 RNQYVKSQYSVVELQRKEVILKSLVSQKNDLKSQIDSLNETIRTLKEEEENKSKDLTKQI 548

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISK 832
            +++ Q+  E        +   +   + E+ +K  EL+  ++  QK+       +     
Sbjct: 549 QEKEAQIETEAADFKTKKEK--LDEELQELTTKKEELQKALEGQQKQNAD----VRAKID 602

Query: 833 EKKASVLIVVTEDLLDRFNAV---------DLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           E+KA +     + L D F A           L   + ++L          +A     N  
Sbjct: 603 ERKAVL-----KKLTDDFEAAKNSKLAEIEKLTNAANELL---------ELA----KNPE 644

Query: 884 KADQAIAGVASFLK 897
               A+  +  F++
Sbjct: 645 AL-AAMEKLPEFIQ 657


>gi|74206889|dbj|BAE33253.1| unnamed protein product [Mus musculus]
          Length = 146

 Score = 42.4 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           + +      RI   T + A   L   ++ +  L   +      +  + E + EE +  + 
Sbjct: 35  QETAMESNNRIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAEN 94

Query: 773 IHAKRKLQLNVEDLSCHK 790
              K KL    + +S +K
Sbjct: 95  KIKKIKLHAKAKIMSLNK 112


>gi|329663673|ref|NP_001192552.1| nucleoprotein TPR [Bos taurus]
 gi|297484395|ref|XP_002694297.1| PREDICTED: translocated promoter region (to activated MET
           oncogene)-like [Bos taurus]
 gi|296478892|gb|DAA21007.1| translocated promoter region (to activated MET oncogene)-like [Bos
           taurus]
          Length = 2360

 Score = 42.4 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HNQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRMEEQMNGLKA 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  N+   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNENLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              +D L + ++S 
Sbjct: 304 TRAVDQLHRLLKST 317


>gi|328855236|gb|EGG04364.1| hypothetical protein MELLADRAFT_89441 [Melampsora larici-populina
           98AG31]
          Length = 937

 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 42/122 (34%), Gaps = 9/122 (7%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            + +     E  +  GI+R+E    +R    +  QD         +K     +   +E+ 
Sbjct: 445 HVEMKITKLEMDLGGGIKRLEEA--RRTIEDIRSQDNLEAKDEKEIKS----LEKIIEKN 498

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +E   L+      + ++        ++  V   +        K+LK +++    ++   
Sbjct: 499 QKEMDSLKTKTKSIEEEIKELQEKILQVGGVKLRTQQSK---VKDLKEIIEHTSNRLTKS 555

Query: 824 II 825
            +
Sbjct: 556 EV 557


>gi|85074861|ref|XP_965798.1| hypothetical protein NCU00658 [Neurospora crassa OR74A]
 gi|28927611|gb|EAA36562.1| predicted protein [Neurospora crassa OR74A]
          Length = 4007

 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 697  THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            THV   G+ ++        +R  I+  +    +    H    +E +  +   L      +
Sbjct: 2273 THVMDKGDQLMKRGEDIKKLRDEIKNFK----KDISDHETTLEETMAEI-EKLSADNKQL 2327

Query: 757  VGRVEEIWEEYRKLQLIHAKR---------------KLQLNVEDLSCHKIADVNFMSHII 801
               +    ++ ++ Q                     +     E +   K+ ++  +   I
Sbjct: 2328 TAEISSYKDKLKQSQTEADALNNDIKDMKSTKEKLGQDAKAKETVLAEKMKEIQGLKDSI 2387

Query: 802  SEVDSK---------ELKSVMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRF 850
            + ++           + + ++D L+  I+  +  I  +    + K ++L   T+D++ R 
Sbjct: 2388 NRLNQDISTKNATLDDKREIIDQLKDDIKTANSTIDTLRKDVKDKDAILAHKTKDVVAR- 2446

Query: 851  NAVDLARLSAKV 862
            +A +LA+L A++
Sbjct: 2447 DA-ELAKLKAEI 2457


>gi|326430878|gb|EGD76448.1| dynein heavy chain isotype 7C [Salpingoeca sp. ATCC 50818]
          Length = 3995

 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 20/218 (9%)

Query: 621  VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            V   K +   ++                 +   M    ++       +  K    +R   
Sbjct: 2674 VCVMKDVKPEKITDSAGKKQLDYWGPAKKMIGDMKFLQSLKDYDKDNIPPKTMAIIRDKY 2733

Query: 681  VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
            +  E+              ++ G    +  +          R+  +   + R  L  ++ 
Sbjct: 2734 IPNEN---FVPEKVAKASSAAEGLCKWIRAMEVYD------RVAKVVAPK-REALKQKEA 2783

Query: 741  KLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQ----LNVEDLSCHKIAD 793
            ++  L++ LK  +  +     RV  + ++  +        + +        D +   I  
Sbjct: 2784 EVGELSAVLKQKRDELKAVQDRVANLNKQLEEKVQEKQDLEAKVDLCAMKLDRAQKLIGG 2843

Query: 794  VNFMSHIISEVDSKELKSVMDALQKKI--QSGIIMLVG 829
            +       SE  ++ L++  D L   I   SG+I  +G
Sbjct: 2844 LGGEKKRWSEA-AESLQAAYDNLTGDILVSSGVIAYLG 2880


>gi|296229526|ref|XP_002760297.1| PREDICTED: nucleoprotein TPR isoform 3 [Callithrix jacchus]
          Length = 2357

 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HNQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              +D L K ++  
Sbjct: 304 TRAVDELHKLLKEA 317


>gi|296229524|ref|XP_002760296.1| PREDICTED: nucleoprotein TPR isoform 2 [Callithrix jacchus]
          Length = 2349

 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HNQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              +D L K ++  
Sbjct: 304 TRAVDELHKLLKEA 317


>gi|296229522|ref|XP_002760295.1| PREDICTED: nucleoprotein TPR isoform 1 [Callithrix jacchus]
          Length = 2363

 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HNQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              +D L K ++  
Sbjct: 304 TRAVDELHKLLKEA 317


>gi|317130082|ref|YP_004096364.1| LPXTG-motif cell wall anchor domain protein [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475030|gb|ADU31633.1| LPXTG-motif cell wall anchor domain protein [Bacillus
           cellulosilyticus DSM 2522]
          Length = 786

 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 18/101 (17%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           E I+G              +  +  L+     +  ++EE+ E  ++L+  +   +LQL V
Sbjct: 610 EFISGDE------------EDASDKLEQKVAELESQIEELNERLQELENNNEIDQLQLMV 657

Query: 784 EDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQS 822
           ++L    +A    +S    +V++    L+  +++L+ +I+ 
Sbjct: 658 DELEAELVA----LSAQYDDVEALVTMLEQQVESLKAQIEE 694


>gi|123455572|ref|XP_001315529.1| DNA-directed RNA polymerase, omega subunit family protein
            [Trichomonas vaginalis G3]
 gi|121898208|gb|EAY03306.1| DNA-directed RNA polymerase, omega subunit family protein
            [Trichomonas vaginalis G3]
          Length = 5185

 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 43/100 (43%), Gaps = 14/100 (14%)

Query: 729  QRARSHLMGQDEKLKSL------ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            ++ +  L   +++LKS+      +  L     +V  ++++  ++    +  + + + +L 
Sbjct: 1650 KKLQEELNKLNDELKSIPEVNDDSDKLNKQIQDVKSKIDQKNKDRNSKEQKNEQLQQELE 1709

Query: 783  VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                    I +           +++ELK  +D ++K+I+ 
Sbjct: 1710 KAKQELESIPETP--------SNAEELKQQIDDIKKQIEE 1741


>gi|294655860|ref|XP_458060.2| DEHA2C08778p [Debaryomyces hansenii CBS767]
 gi|199430663|emb|CAG86127.2| DEHA2C08778p [Debaryomyces hansenii]
          Length = 2042

 Score = 42.4 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 40/105 (38%), Gaps = 19/105 (18%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY---------RKLQLIHAKRKLQLNVED 785
            L  ++ +LK  +  LK +   +   +E++ +E          + L+    ++ L   VE+
Sbjct: 1553 LSEREAELKKESETLKATGKQLEDEIEKLKKEKDVVSDNFQSKNLEFSTLEKDLASKVEE 1612

Query: 786  LSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +            +  D+   +  +   D +  +   D  ++++ 
Sbjct: 1613 IKSINNVTESYKKESDDIKSKTKQLEN-DLEAAQKFGDKTKEELD 1656


>gi|71014706|ref|XP_758750.1| hypothetical protein UM02603.1 [Ustilago maydis 521]
 gi|46098540|gb|EAK83773.1| hypothetical protein UM02603.1 [Ustilago maydis 521]
          Length = 1152

 Score = 42.4 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 81/210 (38%), Gaps = 13/210 (6%)

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           +  E    + N++D+  Q     T      +  A    A +    ++   + S E     
Sbjct: 382 SPCETSHQQRNIDDLEQQLTAQKTENAKMLERHAQ-LVADIEQHKDELYELRSSEEALQR 440

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR--IEAITGQRARSHLM--GQDEKLK 743
               A     H + T E   +       + A   +  I+ +  + A + L   G++ +L+
Sbjct: 441 ELDVANQRLEHANITQEDEAIRFSEAERLAADRYQDQIDKLRDELASAQLQIDGKEAELE 500

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
            L + L     ++  +V ++  E R+ + +  ++K QL   +    ++           +
Sbjct: 501 KLDAEL----QDLTAKVADLEYELRQAENLLEEQKAQLEGVEAEADELD----RQVQAFK 552

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            ++ EL++  D L K++++    L   +KE
Sbjct: 553 QEADELRAEADELHKELEAKDADLAETNKE 582


>gi|311269635|ref|XP_003132576.1| PREDICTED: SLIT and NTRK-like family, member 3 isoform 2 [Sus
           scrofa]
          Length = 638

 Score = 42.4 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E ++  +A   L  + + L+     L+  Q     R+EE + E + L+    +   Q  
Sbjct: 513 VEMLSSSKAMKELTEEQQNLQK---ELESLQNEHAQRMEEFYVEQKDLEKKLEQVMKQKC 569

Query: 783 VEDLSCHKIADVNFMSHIIS--------EVDSKELKSVMDALQKK 819
             D +  K  +  + + +          E D +EL+   D L+++
Sbjct: 570 TCDSNLEKDKEAEYAAQLAELRQRLDHAEADRQELQ---DELRQE 611


>gi|311269633|ref|XP_003132575.1| PREDICTED: SLIT and NTRK-like family, member 3 isoform 1 [Sus
           scrofa]
          Length = 684

 Score = 42.4 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E ++  +A   L  + + L+     L+  Q     R+EE + E + L+    +   Q  
Sbjct: 559 VEMLSSSKAMKELTEEQQNLQK---ELESLQNEHAQRMEEFYVEQKDLEKKLEQVMKQKC 615

Query: 783 VEDLSCHKIADVNFMSHIIS--------EVDSKELKSVMDALQKK 819
             D +  K  +  + + +          E D +EL+   D L+++
Sbjct: 616 TCDSNLEKDKEAEYAAQLAELRQRLDHAEADRQELQ---DELRQE 657


>gi|297458209|ref|XP_002684076.1| PREDICTED: v-ski sarcoma viral oncogene homolog [Bos taurus]
 gi|297471123|ref|XP_002684971.1| PREDICTED: v-ski sarcoma viral oncogene homolog isoform 2 [Bos
           taurus]
 gi|296491187|gb|DAA33260.1| v-ski sarcoma viral oncogene homolog isoform 2 [Bos taurus]
          Length = 638

 Score = 42.4 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E ++  +A   L  + + L+     L+  Q     R+EE + E + L+    +   Q  
Sbjct: 513 VEMLSSSKAMKELTEEQQNLQK---ELESLQNEHAQRMEEFYVEQKDLEKKLEQVMKQKC 569

Query: 783 VEDLSCHKIADVNFMSHIIS--------EVDSKELKSVMDALQKK 819
             D +  K  +  + + +          E D +EL+   D L+++
Sbjct: 570 TCDSNLEKDKEAEYAAQLAELRQRLDHAEADRQELQ---DELRQE 611


>gi|329664216|ref|NP_001192876.1| ski-like protein [Bos taurus]
 gi|297471121|ref|XP_002684970.1| PREDICTED: v-ski sarcoma viral oncogene homolog isoform 1 [Bos
           taurus]
 gi|296491186|gb|DAA33259.1| v-ski sarcoma viral oncogene homolog isoform 1 [Bos taurus]
          Length = 684

 Score = 42.4 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E ++  +A   L  + + L+     L+  Q     R+EE + E + L+    +   Q  
Sbjct: 559 VEMLSSSKAMKELTEEQQNLQK---ELESLQNEHAQRMEEFYVEQKDLEKKLEQVMKQKC 615

Query: 783 VEDLSCHKIADVNFMSHIIS--------EVDSKELKSVMDALQKK 819
             D +  K  +  + + +          E D +EL+   D L+++
Sbjct: 616 TCDSNLEKDKEAEYAAQLAELRQRLDHAEADRQELQ---DELRQE 657


>gi|157151393|ref|YP_001449549.1| hypothetical protein SGO_0230 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157076187|gb|ABV10870.1| Protein of unknown function, DUF536 family [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 180

 Score = 42.4 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 14/115 (12%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE------------- 766
           + R   +  ++    +M  ++ +  LA  L VS+  +  RV+ + EE             
Sbjct: 1   MIRFRYLYLEKVFEEIMAIEKTVSELAEILGVSRQAINNRVKALPEEDTTKNEKGVTVVT 60

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              L  +    K  +  ++     +     M  ++ E +++ L+ + D L+ K +
Sbjct: 61  RSGLIKLEEIYKKTIFEDEPVSEDVKQRELMEILVDEKNAEILR-LYDQLKSKDE 114


>gi|157136232|ref|XP_001656786.1| lamin [Aedes aegypti]
 gi|108881054|gb|EAT45279.1| lamin [Aedes aegypti]
          Length = 558

 Score = 42.4 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 15/197 (7%)

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              +T  + K    N+ND +A  +  V  +      +     +   T   +   +  +  
Sbjct: 39  PTRLTRMQEKVDLMNLNDRLACYIDRVRFLEQENSRLTMEVRSSQETVTREVSNIKQMYD 98

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            +       L       +  EI    I  E+      +R+E    + A  +      +  
Sbjct: 99  HELNDARKLLDETAREKAKLEIDAKRIWEENEDLK--KRLERKA-KEAADYERNARAQES 155

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
             A+ L      V+   ++  +E ++L+   A+ K Q+     +  +          ++ 
Sbjct: 156 R-ANELSAKYNTVLSERKKAQDELKELEKEVARLKKQVETLRKNLEE--------ETLAR 206

Query: 804 VDSKELKSVMDALQKKI 820
           VD   L++ + +L++++
Sbjct: 207 VD---LENAVQSLREEL 220


>gi|212223666|ref|YP_002306902.1| ssDNA-specific exonuclease [Thermococcus onnurineus NA1]
 gi|212008623|gb|ACJ16005.1| ssDNA-specific exonuclease [Thermococcus onnurineus NA1]
          Length = 476

 Score = 42.4 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 51/157 (32%), Gaps = 29/157 (18%)

Query: 733 SHLMGQDEKLKSLASFLKVSQ---------GNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
            H   +   L +    L                  R  ++ ++Y++ Q+   K  +Q   
Sbjct: 292 RHEAREFATLLNATGRLNAGTLGVAICLGDEEAYKRARKMLDDYKREQIEARKFLIQNWS 351

Query: 784 EDLSCHKI----ADVNF---MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                       A  N    +  I + +       ++D      +  +++L    ++   
Sbjct: 352 MADEGEHAYVFYAGRNIRDTLVGIAANIAINA--GLVD-----PEKPVVVLADSDED--P 402

Query: 837 SVLIVVT----EDLLDRFNAVDLARLSAKVLGGGGGG 869
           +++        + L   ++  +  +  A+ LGG GGG
Sbjct: 403 NLVKGSARTTEKALAKGYHLGEALKEVAEKLGGEGGG 439


>gi|149634646|ref|XP_001514639.1| PREDICTED: similar to p167 [Ornithorhynchus anatinus]
          Length = 1362

 Score = 42.4 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 88/309 (28%), Gaps = 28/309 (9%)

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
                    I D +R  +            +   VE   L+    +   +++   +    
Sbjct: 384 QAPPTRIVLINDMVRFNVLQYVVPEVKDLYNWLEVEFNPLKLCDRVTKVLNWVREQAEK- 442

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
                  L   +  +  + + +    +       + +    +         +      A+
Sbjct: 443 ----EPELQQYVPQLQNNTILRLLQQVAQIYQSIEFSRLTSLVPFVDAFQLERAIVDAAR 498

Query: 646 NLPVVTRIMNREDAIASGAAALL------------GTKYNDRVRVVSVEYEDGGVHSSAL 693
           +  +  RI +    ++ G+                 +  ++++R            +  +
Sbjct: 499 HCDLQVRIDHTSRTLSFGSDLNFSTREDAPVGPHLQSMPSEQIRNQLTAMSSVLAKALEV 558

Query: 694 CGGTHVSSTGEIM--LLYIVSESSIRAGIRRIEA--------ITGQRARSHLMGQDEKLK 743
               HV    E    L       + R   +RI A             + +    ++E  +
Sbjct: 559 IKPAHVLQEKEEQHQLAVTAYVKNSRKEHQRILARRQTIEERKERLESLNIQREKEELEQ 618

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
             A   KV +     R+ +  +E  K +++    +++         +I      +    +
Sbjct: 619 REAELQKVRKAE-EERLRQEAKEREKERILQEHEQIKKKTVRERLEQIKKTELGAKAFKD 677

Query: 804 VDSKELKSV 812
           +D ++L+ +
Sbjct: 678 IDIEDLEEL 686


>gi|12860565|dbj|BAB31989.1| unnamed protein product [Mus musculus]
          Length = 146

 Score = 42.4 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           + +      RI   T + A   L   ++ +  L   +      +  + E + EE +  + 
Sbjct: 35  QETAMESNNRIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAEN 94

Query: 773 IHAKRKLQLNVEDLSCHK 790
              K KL    + +S +K
Sbjct: 95  KIKKIKLHAKAKIMSLNK 112


>gi|15669345|ref|NP_248150.1| cell division protein CDC48 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2492505|sp|Q58556|Y1156_METJA RecName: Full=Cell division cycle protein 48 homolog MJ1156
 gi|1591785|gb|AAB99153.1| cell division control protein 48 (cdc48), AAA family
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 903

 Score = 42.4 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 5/172 (2%)

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
               + TR MN  + +     A     Y     + ++  E   +      G        E
Sbjct: 628 DIFKIHTRSMNLAEDVNLEELAKKTEGYTG-ADIEALCREAAMLAVRESIGKP---WDIE 683

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L  +++     +G  R  A+           ++       S LK + G ++  +    
Sbjct: 684 VKLRELINYLQSISGTFRAAAVELNSVIKATKERESAEAGEFSELKNAIGKIISVLSPAK 743

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           E+   ++    K    +N E+L   +  +   ++  + ++  K LK ++D +
Sbjct: 744 EKIEAVEKEIDKFLEVINKEELKPSEKDEAQKLAKYLKDILGK-LKEMIDNI 794


>gi|307200292|gb|EFN80560.1| Spindle assembly abnormal protein 6-like protein [Harpegnathos
           saltator]
          Length = 674

 Score = 42.4 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL----QLNVEDLSC 788
             L  +D +L+   + LK     +V   E + +   +L    +K KL     L  E L  
Sbjct: 377 DLLSERDGQLQRKQNSLKSLSDELVKANEILTKLQNELASTKSKLKLRTSIALEQERLLD 436

Query: 789 HKIADVNFMSHIISEV--DSKELKSVMDALQKKIQ 821
            K  +V  +   +  +  D+K+ K  +D+L+++I+
Sbjct: 437 TKQKEVGQLETKMESLVRDAKDAKGEVDSLKEQIK 471


>gi|1168461|sp|P21249|ANT1_ONCVO RecName: Full=Major antigen; AltName: Full=Myosin-like antigen
 gi|530825|gb|AAA80009.1| OVT1 [Onchocerca volvulus]
          Length = 2022

 Score = 42.4 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           R      DE+++ +    K+    +  R+E + EE ++L+  +   K ++   +      
Sbjct: 525 RRAAEDADERIRKIDEETKIRISELTNRIEMLLEENKRLKDENDGMKNRIQDIE------ 578

Query: 792 ADVNFMSHIISEVDSKELKSV 812
            + N +   + E D   LK++
Sbjct: 579 KEYNTIIRKLEEKD-NALKNL 598


>gi|297300676|ref|XP_002808542.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat domain-containing
            protein 26-like [Macaca mulatta]
          Length = 1700

 Score = 42.4 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   +KL  + + L+ +Q      V   E++ +  +KL+  +AK K+ +  +     
Sbjct: 1244 DETQDLKKKLGQIRNQLQEAQDRHTEAVRCAEKMQDHKQKLEKDNAKLKVTIKKQMDKIE 1303

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++   N ++  +SE + ++LK +M  L++ ++
Sbjct: 1304 ELQK-NLLNANLSEDEKEQLKKLM-ELKQSLE 1333


>gi|224436509|ref|ZP_03657523.1| ATP-dependent Clp protease ClpB [Helicobacter cinaedi CCUG 18818]
 gi|313143017|ref|ZP_07805210.1| ATP-dependent CLP protease ClpB [Helicobacter cinaedi CCUG 18818]
 gi|313128048|gb|EFR45665.1| ATP-dependent CLP protease ClpB [Helicobacter cinaedi CCUG 18818]
          Length = 750

 Score = 42.4 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 17/122 (13%)

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +  +  ++ +E      I+   K ++ V+D+       V+     IS  +SK +KS+ + 
Sbjct: 381 LPDKAIDLLDEVGANTKIYHTNKPKIEVKDIESILSKSVHIPKSTISSDESKMMKSLANN 440

Query: 816 LQKKI---QSGIIMLVGISKEKKA----------SVLIVVTEDLLDRFNAVDLARLSAKV 862
           L+KKI    S I+ L  + K  KA          S +      +       +L++  AK+
Sbjct: 441 LKKKIFSQDSAIMELARVIKANKAGLSESNKPIGSFVFAGPSGVGKT----ELSKELAKL 496

Query: 863 LG 864
           LG
Sbjct: 497 LG 498


>gi|262394073|ref|YP_003285927.1| alanyl-tRNA synthetase domain protein [Vibrio sp. Ex25]
 gi|262337667|gb|ACY51462.1| alanyl-tRNA synthetase domain protein [Vibrio sp. Ex25]
          Length = 213

 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+     +    +V  DQT F+AE+GGQ  D G   G  + +          G+ + + +
Sbjct: 14  ELNSRVTNVDGNKVELDQTIFFAESGGQESDKGTINGIPVLIAQ------KLGVRLIYTL 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     ++   ID++ R  L   H A  ++           + + G+ I+ +  R 
Sbjct: 68  ESSPNFTLGDAVTTCIDWKRRYALMKLHFAAEVVLEMFYQRRE-GIVKIGAHISENKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   S+ I                   L  +   +       S   +    +     R  
Sbjct: 127 DFEWSESIGPL----------------LKAIETDVQDLINSDSVIISDFSDQ-ESERRYW 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            V+       +   CGGTH+  T E+  + +    +I  G  R+E
Sbjct: 170 RVDGF-----AQVPCGGTHLKRTSEVGQIQLKR-KNIGKGKERVE 208


>gi|123471672|ref|XP_001319034.1| SMC flexible hinge domain protein [Trichomonas vaginalis G3]
 gi|121901808|gb|EAY06811.1| SMC flexible hinge domain protein, putative [Trichomonas vaginalis
           G3]
          Length = 1169

 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L   + K+K L   LK  +  +  R EE  +     Q +  + +  L        +I
Sbjct: 321 LEELKRINSKVKKLTDQLKEQKDELTKRQEESTKTTEDHQKLENEEQEALEKVQQLEKRI 380

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +VN    I +E D+K L  +++  +KK+  
Sbjct: 381 TEVNI--GIANENDNKSLSDIIENEKKKLAD 409


>gi|311249762|ref|XP_003123793.1| PREDICTED: homer protein homolog 1-like [Sus scrofa]
          Length = 362

 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 76/226 (33%), Gaps = 27/226 (11%)

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
           +        +     +++N    +  P VT+           A     +     +    +
Sbjct: 136 SQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRPEPTQNALPFSHSSAISKHWEAEL 195

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLM 736
            +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     SH  
Sbjct: 196 ATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHSHKT 255

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-- 794
             ++ ++ L   LKV +  +  R+++  +  R+LQ        +L   ++    +     
Sbjct: 256 ELNQTIQELEETLKVKEEEI-ERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLEGQLS 314

Query: 795 -----------------NFMSHIISEVDSK--ELKSVMDALQKKIQ 821
                            N +  ++  +D K  EL  + D L K ++
Sbjct: 315 DLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLAKLLE 360


>gi|254228206|ref|ZP_04921635.1| metal-dependent hydrolase [Vibrio sp. Ex25]
 gi|151939279|gb|EDN58108.1| metal-dependent hydrolase [Vibrio sp. Ex25]
          Length = 230

 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+     +    +V  DQT F+AE+GGQ  D G   G  + +          G+ + + +
Sbjct: 31  ELNSRVTNVDGNKVELDQTIFFAESGGQESDKGTINGIPVLIAQ------KLGVRLIYTL 84

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     ++   ID++ R  L   H A  ++           + + G+ I+ +  R 
Sbjct: 85  ESSPNFTLGDAVTTCIDWKRRYALMKLHFAAEVVLEMFYQRRE-GIVKIGAHISENKSRI 143

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   S+ I                   L  +   +       S   +    +     R  
Sbjct: 144 DFEWSESIGPL----------------LKAIETDVQDLINSDSVIISDFSDQ-ESERRYW 186

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            V+       +   CGGTH+  T E+  + +    +I  G  R+E
Sbjct: 187 RVDGF-----AQVPCGGTHLKRTSEVGQIQLKR-KNIGKGKERVE 225


>gi|317137119|ref|XP_001727510.2| intracellular protein transport protein (UsoA) [Aspergillus oryzae
            RIB40]
          Length = 1210

 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 714  SSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVGRVEEIWEEYRKLQL 772
              +++  +R E  T + ++S     +   K L  + L+V +     +      E  +LQ 
Sbjct: 1046 EKVKSEAKRTEDATRKSSKSTKSEAEGLRKELEKAKLEVKEKEAARK--STQTEITELQR 1103

Query: 773  IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
               K KL+   +     K  +   ++   ++ +  EL+  ++ L+ +++ 
Sbjct: 1104 ELEKVKLEAKDQAEEARKAKENESVAQKSTQ-EIDELRKELEKLKSEVKE 1152



 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 729  QRARSHLMGQDEKLKS----LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            Q AR  L     ++K          K     +   +E++  E +K +   A  K   +  
Sbjct: 952  QEARERLKKAQSEVKEKEAAARKSAKSEAEGLRKELEKVRSEAKKAE--EAALKSANSEI 1009

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +    ++  V   +    +   K  +S  D L+K+++ 
Sbjct: 1010 EGLRKELEQVRSEAKNAEDAARKSAQSEADKLRKELEK 1047


>gi|301618682|ref|XP_002938745.1| PREDICTED: hypothetical protein LOC100496075 [Xenopus (Silurana)
           tropicalis]
          Length = 1994

 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 735 LMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-K 790
           L  ++   KSL   L    V   ++  ++E+  EE + L+    + + +  V+ +     
Sbjct: 884 LTERECLEKSLKGQLEERNVDINSLQKQLEKKTEEEKSLKRRLEENEREKQVQQIHLESN 943

Query: 791 IADVNFMSHIISEVDSKELK---SVMDALQKKIQS 822
           + +V  +   + + D+ ++K     +D+L+ +I+ 
Sbjct: 944 LKEVQSLKKQLKKSDNDQMKYSAEQLDSLKNQIEE 978


>gi|123445769|ref|XP_001311641.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121893459|gb|EAX98711.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 1513

 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 42/105 (40%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +   +     +EK+K ++               ++ +   K +  +++   +L+  + S 
Sbjct: 771 EELENANKELNEKIKQISDDFSNKSSEFEKEKSDLQKILEKFKKENSELHSKLDFSEDSI 830

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            KI   + +    SE D+ EL+  +  LQ+++   +  L     +
Sbjct: 831 EKIKSQSELKLTQSEKDNSELRKKLSQLQREMNDSLSKLNSEKSD 875


>gi|312078980|ref|XP_003141976.1| hypothetical protein LOAG_06392 [Loa loa]
 gi|307762860|gb|EFO22094.1| hypothetical protein LOAG_06392 [Loa loa]
          Length = 1269

 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           R      +E+++ +    K+    ++ R+E + E+ ++L+    + K +         +I
Sbjct: 497 RRAAEDAEERIRKIEDETKIRISELMNRIETLLEDNKRLKDEADRMKNR-------VQEI 549

Query: 792 A-DVNFMSHIISEVDSKELKSV 812
             D N +   + E D   LK++
Sbjct: 550 ERDYNNIVRKLEEKD-NALKNL 570


>gi|242792719|ref|XP_002482012.1| spindle pole body associated protein SnaD, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218718600|gb|EED18020.1| spindle pole body associated protein SnaD, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 745

 Score = 42.1 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC---H 789
             L  Q + LK  A     S  +    + ++ EE +  +   +KR   L   +       
Sbjct: 282 DALREQLKILKQKADEEAASNEDDAKEIMKLQEELKDAREEISKRDEALEDSNSELQLRQ 341

Query: 790 KIADVNFMSHIISE-----VDSK----ELKSVMDALQKKIQS 822
           K  +++ +   I E      D+     +++   D L+ +I+S
Sbjct: 342 KNTEIDDLKAQIDEKELQSADADEELADMQRQYDTLKDRIES 383


>gi|141796054|gb|AAI34821.1| LOC100049148 protein [Xenopus laevis]
          Length = 831

 Score = 42.1 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L  ++ K+  L   LKV QG V+   E++ +E +KL     K K ++     +  K  D 
Sbjct: 136 LKQEEGKVDQLNRNLKVEQGKVMEVTEKLIDESKKL----LKFKSEMEENVYNLTKEKDE 191

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQS 822
           +       E  + EL+  +D L K++++
Sbjct: 192 SLSKLRTEEDKNAELRCRVDLLMKRLEN 219


>gi|123397028|ref|XP_001301011.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121882135|gb|EAX88081.1| hypothetical protein TVAG_023960 [Trichomonas vaginalis G3]
          Length = 412

 Score = 42.1 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVG--RVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              +  L  ++ + + L   LK  Q  +     V +I EE RK++  +   K  +  +  
Sbjct: 259 NELKETLEERENQNEFLRKQLKSLQEKLKDDDSVAKITEEKRKIEKENKILKKLVKKQSE 318

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           S    + +  +  +I    + ELK +  A+ K
Sbjct: 319 SLEDDSRIKVLQAVIES-STNELKRLFKAVLK 349


>gi|297662489|ref|XP_002809748.1| PREDICTED: LOW QUALITY PROTEIN: nucleoprotein TPR-like [Pongo
           abelii]
          Length = 2370

 Score = 42.1 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              +D L K ++  
Sbjct: 304 TRAVDELHKLLKEA 317


>gi|302499756|ref|XP_003011873.1| hypothetical protein ARB_01852 [Arthroderma benhamiae CBS 112371]
 gi|291175427|gb|EFE31233.1| hypothetical protein ARB_01852 [Arthroderma benhamiae CBS 112371]
          Length = 921

 Score = 42.1 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 62/175 (35%), Gaps = 33/175 (18%)

Query: 740 EKLKSLASFLKVSQGNVVGRVE-------EIWEEYRKLQLIH---AKRKLQLNVEDLSCH 789
           + +   A+ ++V++ +    ++       ++  E   L+      +K +L+   ++    
Sbjct: 405 DLIDEAAASVRVTRESQPEALDLLERRHRQLQIEIHALEREQDKDSKLRLENAKKEAEAV 464

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS----VLIVVTED 845
               +      + E   KEL   +   + K++S  + L   ++         +      D
Sbjct: 465 NAELIPLRDKYMKE---KELSQTIQEAKIKLESLKVRLDSATRSGDTQRASDLAYYAIPD 521

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ--SGGPNGNKADQAI--AGVASFL 896
           +  R +A++ A+             +   A+  +GG + +    A+    +   +
Sbjct: 522 VEKRISALESAKA------------KADAARVNAGGDDNSLVVDAVGPDQINEIV 564


>gi|77463057|ref|YP_352561.1| ATPase [Rhodobacter sphaeroides 2.4.1]
 gi|77387475|gb|ABA78660.1| ATPase [Rhodobacter sphaeroides 2.4.1]
          Length = 217

 Score = 42.1 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 34/144 (23%)

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKEL--KSVMDALQKK 819
           +  E    +      + Q+ +  L     I   +F    ++E   +EL  +S++   +  
Sbjct: 19  LQSEI--AEKQARSIRCQMTIAKLPLVKDIEQFDFTGTPVNEALVRELATRSLVADQRN- 75

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR------FNAVDLARLSAKVLGGGGGG---- 869
                ++L+G +   K+ + I +   L+        FN VDL          G  G    
Sbjct: 76  -----VVLIGGTGTGKSHLAIAIARALIRNGTRGRFFNVVDLVNKLEAETRSGKQGRTAD 130

Query: 870 --GRPHM-----------AQSGGP 880
             GR              AQ+GG 
Sbjct: 131 YLGRLDFVILDELGYLPFAQAGGQ 154


>gi|313213298|emb|CBY37131.1| unnamed protein product [Oikopleura dioica]
          Length = 1508

 Score = 42.1 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 50/491 (10%), Positives = 131/491 (26%), Gaps = 26/491 (5%)

Query: 348  EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +    +E+E        G             +E+ +      L           +     
Sbjct: 719  QRIFSAEEEISLLRDKSGGATKALSKEKKRLEEVEDSLQQALLAGKQRETQLNSEIESKE 778

Query: 408  RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
              +  ++  +        R   +           E+   SL  +   T    Y  L+   
Sbjct: 779  EFIHKLERKNAE----MVRRLHQFDLEKDEMVGREERLNSLLSEGNET----YGALQNEM 830

Query: 468  FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-----IVEEAVSGQKVEVVFDQ----- 517
               + +     +   +        + ++    E     ++E   S +++    D      
Sbjct: 831  ESLKSQYERRLRTCDETKRENEGTIHSLEVDIENMRARLLESEKSTERLRADVDNKGNLE 890

Query: 518  --TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
               PF      ++          I  +    + K          ++  +   + +L    
Sbjct: 891  KINPFKFPTSSKITFLTNYKDREIIRERQQHKLKDAEANEKIGGLQHDLKIQQKTLQAVT 950

Query: 576  DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
                 +    +      +      + G     N      +    D + S      E+   
Sbjct: 951  MDLESQAAEESARLEKQIDILKLEVQGKDSELNKVRHEKERDILDQSASDLQGELEVVVA 1010

Query: 636  EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
            + +       +L V  R     D   +   + +     +R ++ S+  E      S    
Sbjct: 1011 QLDQTRQEKNSLTVRLREQEVIDDELNSNLSEVQQMKQEREKLKSIVNEKSKEIDSLTIQ 1070

Query: 696  GTHVS-STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
                     ++           +    RIE    +  +     +DE +  +         
Sbjct: 1071 LQRSDKRVEQVESEMKQKSEESKEAAERIE-DARKMIQDLRREKDELVSMIGQRSSDQNL 1129

Query: 755  NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM---SHIISEVDSKELKS 811
                ++E++ EE R LQ      + +  +E  +  + +++  +        E+  ++LK 
Sbjct: 1130 KFTQKIEKLREENRDLQKKLDDVRKESRLEAKTLSEASNIKQVLREKQHYQELS-EDLKV 1188

Query: 812  VMDALQKKIQS 822
             +  L+ ++  
Sbjct: 1189 DIQKLKNQMNE 1199


>gi|145539868|ref|XP_001455624.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423432|emb|CAK88227.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1003

 Score = 42.1 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q+ +  +   ++K       LK    +    ++++ ++ ++ +      + ++N  +  C
Sbjct: 563 QKLQDQINNTEQKQNKTQDQLKNQLQDAQNEIKQLKDQIKEQEKEKKNLQNEVNNLNKEC 622

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDAL 816
             + D      I  + ++ E+K + D L
Sbjct: 623 DDL-DAKLQQKIKEQQENSEIKRLNDEL 649


>gi|119513050|ref|ZP_01632106.1| threonyl-tRNA synthetase [Nodularia spumigena CCY9414]
 gi|119462292|gb|EAW43273.1| threonyl-tRNA synthetase [Nodularia spumigena CCY9414]
          Length = 602

 Score = 42.1 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 73/196 (37%), Gaps = 24/196 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H++  A+  +        G  I  +G  +D    +P +  +LK+I+  +  II + 
Sbjct: 25  HTASHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFSENDLKAIKKEMVKIINRK 83

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRV----RVVSVEYEDGGVHSSALCGGTHVSST 702
           LPV+   ++RE+A      + +   Y   +    +   +     G     LC G HV +T
Sbjct: 84  LPVIREEVSREEAEKR--ISEIHEPYKLEILGDIKQEPITIYHLGNEWWDLCAGPHVENT 141

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---- 758
            ++     +   S+     R     G   ++ L                S   +      
Sbjct: 142 SQLNP-KAIELESVAGAYWR-----GDETKAQLQRIYATAWE-------SPEQLAEYKRR 188

Query: 759 RVEEIWEEYRKLQLIH 774
           + E +  ++RKL    
Sbjct: 189 KEEALRRDHRKLGKEL 204


>gi|114629805|ref|XP_507708.2| PREDICTED: hypothetical protein [Pan troglodytes]
          Length = 1711

 Score = 42.1 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   +KL  + + L+ +Q      V   E++ +  +KL+  +AK K+ +  +     
Sbjct: 1255 DETQDLKKKLGQIRNQLQEAQDRHTEAVRCAEKMQDHKQKLEKDNAKLKVTIKKQMDKIE 1314

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++   N ++  +SE + ++LK +M  L++ ++
Sbjct: 1315 ELQK-NLLNANLSEDEKEQLKKLM-ELKQSLE 1344


>gi|291403919|ref|XP_002718309.1| PREDICTED: kinectin 1 [Oryctolagus cuniculus]
          Length = 1328

 Score = 42.1 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 22/148 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  ++ ++K + + LK  + ++  +   ++E+ +E + L+    + K Q   +  S    
Sbjct: 913  LKEKENEMKKVETTLKERESDLSSKTKLLQEVQDENKLLKSQIEQLKQQNCQQTSSFPPH 972

Query: 792  AD-VNFMSHIISEV-----DSKELKSVM-------DALQKKIQSGIIMLVGISK--EKKA 836
             + +  +S    E+     + K LK  +       + L++K    +  L    K  + K 
Sbjct: 973  EELLKVISEREKEITELQNELKSLKDAVEHQRKKNNELREKNWEAMEALASTEKMLQDKV 1032

Query: 837  SVLIVVTEDLLDRFNAVDL-ARLSAKVL 863
                  +++      AV+L A+   K L
Sbjct: 1033 H---KTSKERQQHVEAVELEAKEVLKKL 1057


>gi|282883187|ref|ZP_06291786.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B]
 gi|281296999|gb|EFA89496.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B]
          Length = 240

 Score = 42.1 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QG 754
           G  +  TGEI  L I S +    GI RI   +G  A      + + L ++ ++L +  + 
Sbjct: 171 GPSLKRTGEIGFLIIKSVTKTLNGI-RINIASGTGAYKDYRKKLDTLNNIKNYLNLKDED 229

Query: 755 NVVGRVEEIWE 765
            +   ++++  
Sbjct: 230 EIFSAIKKLKA 240


>gi|67458414|ref|YP_246038.1| cell surface antigen Sca1 [Rickettsia felis URRWXCal2]
 gi|75537113|sp|Q4UNI5|SCA1_RICFE RecName: Full=Putative surface cell antigen sca1; Flags: Precursor
 gi|51557597|gb|AAU06439.1| surface antigen [Rickettsia felis]
 gi|67003947|gb|AAY60873.1| Cell surface antigen Sca1 [Rickettsia felis URRWXCal2]
          Length = 1703

 Score = 42.1 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 14/116 (12%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q    +     LK     +  +++E+ EE + L+    K K +L+ ++    + 
Sbjct: 315 LQQLKKQIASSQKTTEKLKSEAAKIGIKIKELDEENKSLKTGRVKNKRELDKDNAKLKEN 374

Query: 792 A-DVNFMSHIISEVDSKELKSVMDALQKKIQSGI--IMLVGISKEKKASVLIVVTE 844
              ++ +   ++  +++      + L ++I   +  ++L+      K  V   VTE
Sbjct: 375 NKKIDKLQQKLTNKNNE-----ANRLSEEIDISVKKVVLI------KPQVKAPVTE 419


>gi|323466184|gb|ADX69871.1| Orf protein [Lactobacillus helveticus H10]
          Length = 205

 Score = 42.1 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
             + ++ +A  + VS  ++V   + I +E ++ ++   K+  +  + D    KI   + +
Sbjct: 14  MSKTVREIAELMGVSSDDLVKEKQRIRDEMKRQKIKVTKQGNKFVIADSDVEKI--TSAL 71

Query: 798 SHIISEVDSK------ELKSVMDALQKKIQS 822
              + + DSK      EL  ++  L+ +   
Sbjct: 72  KEKLDKEDSKKKEDNEELLQMIKQLKAENSK 102


>gi|297281236|ref|XP_002802088.1| PREDICTED: nucleoprotein TPR-like [Macaca mulatta]
          Length = 2354

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 267 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 321

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 322 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 379

Query: 810 KSVMDALQKKIQSG 823
              +D L K ++  
Sbjct: 380 TRAVDELHKLLKEA 393


>gi|87080799|ref|NP_001030190.2| aminoacyl tRNA synthase complex-interacting multifunctional protein
           1 [Bos taurus]
 gi|86821409|gb|AAI03050.2| Small inducible cytokine subfamily E, member 1 (endothelial
           monocyte-activating) [Bos taurus]
 gi|296486754|gb|DAA28867.1| small inducible cytokine subfamily E, member 1 [Bos taurus]
          Length = 322

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR--VEEIWEEYRKLQLIHAKRKLQ-- 780
             TG      L  +  +   +  +LK     +  +  ++    E +KL++ +AK K +  
Sbjct: 10  MATGDAVLKRLEQKGAEADQIIEYLKQQVALLKEKAILQATLREEKKLRVENAKLKKEIE 69

Query: 781 -LNVEDLSCHKIADVNFM 797
            L  E +       V  +
Sbjct: 70  GLKQELIKAEIQNGVKQI 87


>gi|51557620|gb|AAU06450.1| surface antigen [Rickettsia heilongjiangensis]
          Length = 1588

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 727 TGQRARSHLMGQDEKL---KSLASFLKVSQGNVVGRVE--EIWEEYRKLQLIHAKRKLQL 781
           TG++ +  L    ++L   + +   LK     +  +++  +  ++ +KL+     +  + 
Sbjct: 247 TGKKNKKPLQKLYKQLTSAQKITEELKSRAEEIETKIKIGKNKDKIKKLEKELTSKNNKA 306

Query: 782 NVEDLSCHKIA 792
           +       KI 
Sbjct: 307 DRLFQKIEKID 317


>gi|324500172|gb|ADY40090.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1969

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 734 HLMGQDEKLKSLASFLKVSQ---GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
            +  +D +L+ L   LK S+     +V R E   E  ++L+   A  K +LN +  S   
Sbjct: 397 AIRTRDNELQQLQRKLKNSELQISELVTRFETAQEARKRLEKQLADAKKELNTQMKSMED 456

Query: 791 IA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
              ++  +   +   DS+  K++ +  ++K++  +
Sbjct: 457 ANRELKRLEERLRASDSE--KTITENARRKLEEEV 489



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 78/215 (36%), Gaps = 12/215 (5%)

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+ I P  +   V ++      EL+ ++  + +   Q   +VTR    ++A       L 
Sbjct: 382 GTHIIPSEVLRSVRYAIRTRDNELQQLQRKLKNSELQISELVTRFETAQEARKRLEKQLA 441

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT- 727
             K     ++ S+E  +  +          + ++     +   +   +   +RR++ I  
Sbjct: 442 DAKKELNTQMKSMEDANRELKRLE----ERLRASDSEKTITENARRKLEEEVRRLKTIID 497

Query: 728 ---GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH----AKRKLQ 780
                  +  L   + + + +    K     +  R+E + ++ ++L+        K +  
Sbjct: 498 QSDADGVKKALEEAEAQNRFIEEEYKTRIAELSRRIEGLVDDNKRLKGDLNGVKDKYRNL 557

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
               +++  K+ + +F    + +     LK + D 
Sbjct: 558 EIQYNITVQKLDEKDFALKNLEDSKRDLLKDLEDQ 592


>gi|211827963|gb|AAH04690.2| Cep290 protein [Mus musculus]
          Length = 695

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI A+T Q+     +   + ++     LK    ++   + ++ E  +  +         L
Sbjct: 197 RIIAVTSQK--EANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDL 254

Query: 782 NVEDLSCHKI-ADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           N  +    K     N +      +D  + EL+  +  L   +QS  ++      + K S+
Sbjct: 255 NELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLI------DNKQSL 308

Query: 839 LIVVTEDLLDRFN 851
           +    ++L  +  
Sbjct: 309 I----DELQKKVK 317


>gi|118386279|ref|XP_001026260.1| hypothetical protein TTHERM_00781040 [Tetrahymena thermophila]
 gi|89308027|gb|EAS06015.1| hypothetical protein TTHERM_00781040 [Tetrahymena thermophila SB210]
          Length = 2198

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 727  TGQRARS--HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            T + A     L     +LK +   L++       +++++  E  +L+    + + +L   
Sbjct: 1363 TAKEALKGAELDQVQSELKKVTRRLELESTENKKKIQQLQTENEELKKQTDQEREKLRKL 1422

Query: 785  DLSC-HKIADVNFMSHIISEVD 805
            +    ++I  +N +   ++E++
Sbjct: 1423 EYEAPNQIERINQLYARVTELN 1444


>gi|290473558|ref|YP_003466428.1| putative metal-dependent hydrolases [Xenorhabdus bovienii SS-2004]
 gi|289172861|emb|CBJ79632.1| putative Predicted metal-dependent hydrolases [Xenorhabdus bovienii
           SS-2004]
          Length = 227

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 63/223 (28%), Gaps = 29/223 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GE++          +  +   F+ + GGQ  D G      ++++     +      V   
Sbjct: 18  GEVIANGSDEWGQWIALNNNIFHPQGGGQPADIGWVNNIPVKVRKQATGQ------VVVY 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                       L   +  + R   +  H+A HLL+  +       +  +          
Sbjct: 72  PESALHAPPGAQLNSKLSEEARICHAALHTAGHLLNWEMRQYGWMAIKGHHFPGESRVEF 131

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
             +  S   +        +   +   ++   VT                    Y    R+
Sbjct: 132 SPMGSSAIPSDQLSLQNIETTINTRLRDGGQVTTW------------------YEADTRL 173

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
             +E  +        C GTHV +  +I    I S    +  +R
Sbjct: 174 CLIEGTEPM-----PCAGTHVDNLNKINEFTIKSVKFKKETLR 211


>gi|255721835|ref|XP_002545852.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240136341|gb|EER35894.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 596

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 12/105 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  +D +LK LA+ LK+    ++ + +E+ ++ ++L     +  L+   +      I 
Sbjct: 269 KDLKAKDNQLKELANQLKIKDDELLAKEKELMDKDKELLAKDKELLLKDREQLDKEKSIM 328

Query: 793 DVNFMS------------HIISEVDSKELKSVMDALQKKIQSGII 825
           +    +                E D+K +K+ ++ LQ  + S + 
Sbjct: 329 NSPIETWGYETQLGKSEIKSNEEPDAKSMKNDLNKLQLNMNSALC 373


>gi|6606229|gb|AAF19126.1|AF143466_1 BdrB3 [Borrelia hermsii]
          Length = 155

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 51/108 (47%), Gaps = 15/108 (13%)

Query: 732 RSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKL------QLIHAKRKLQLNVE 784
             +L       L+ L + LK    ++  +V+ +  E +        ++ + + +L+ +++
Sbjct: 44  IEYLETTFNLKLEKLEASLKSDIRDLDNKVDNVRNELKSDIRDLDNKIDNVRNELKSDIK 103

Query: 785 DLSCHKIADV-NFMSHIISEV------DSKELKSVMDALQKKIQSGII 825
           DL  +KI  V N ++  I  V      D K+L + +D ++ +++S I 
Sbjct: 104 DLD-NKIDTVENNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDIA 150


>gi|321474505|gb|EFX85470.1| hypothetical protein DAPPUDRAFT_193952 [Daphnia pulex]
          Length = 886

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 40/88 (45%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
           + LKV    +  +  +  E+   L     + +LQL     +  ++ +   +       + 
Sbjct: 387 NKLKVKLDELERQEAKNEEQLFNLDEDKVRLELQLADTQATAAQLEEAKRVEAETKNQEI 446

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEK 834
           ++LK++++AL+ + +   + L  + +EK
Sbjct: 447 EQLKNLIEALEHQKEDSKVQLANVEEEK 474


>gi|297686219|ref|XP_002820659.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat domain-containing
            protein 26-like [Pongo abelii]
          Length = 1699

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   +KL  + + L+ +Q      V   E++ +  +KL+  +AK K+ +  +     
Sbjct: 1270 DETQDLKKKLGQIRNQLQEAQDRHTEAVRCAEKMQDHKQKLEKDNAKLKVTIKKQMDKIE 1329

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++   N ++  +SE + ++LK +M  L++ ++
Sbjct: 1330 ELQK-NLLNANLSEDEKEQLKKLM-ELKQSLE 1359


>gi|288940415|ref|YP_003442655.1| flagellar hook-associated protein FlgK [Allochromatium vinosum DSM
           180]
 gi|288895787|gb|ADC61623.1| flagellar hook-associated protein FlgK [Allochromatium vinosum DSM
           180]
          Length = 723

 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVN--FMSHIISEVDSKEL 809
             + GR E I     + Q   A  +++ ++E+++     +AD+N   ++   +     +L
Sbjct: 137 ETLTGRFEAINGRLDE-QRRLANGQIETSIEEINQYAESVADLNKQIIARSTAGSPPNDL 195

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
               D + +K+   + + +    +   +V I   + L+   NA +L
Sbjct: 196 LDRRDTILRKLSEKVDVSLSTQDDGAVNVFIGSGQGLVVGTNASEL 241


>gi|145517043|ref|XP_001444410.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411821|emb|CAK77013.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1069

 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                 Q+  LK   +  +    N++ ++ ++ +  ++L     K +  LN       +I
Sbjct: 382 LRDKDAQNNSLKEKLARAEQDNKNLLDQINQLNQMIKQLNREIEKLQGDLNG------RI 435

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            ++N+++  + + +   ++++ D +  K+   I
Sbjct: 436 NEINYLNQQLQKCN-DNIRNLEDQI-NKLNDDI 466


>gi|269139965|ref|YP_003296666.1| hypothetical protein ETAE_2620 [Edwardsiella tarda EIB202]
 gi|267985626|gb|ACY85455.1| hypothetical protein ETAE_2620 [Edwardsiella tarda EIB202]
 gi|304559799|gb|ADM42463.1| alanyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 255

 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 85/238 (35%), Gaps = 43/238 (18%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-------------------RLQITDVQKK 549
           +    VFD+T FYAE+GGQ+ D G  +                       + +  +V   
Sbjct: 37  ENDLAVFDRTIFYAESGGQVCDVGAIVSAAGGTPCPVVDVQHKLGHKLYIKREGVNVPLV 96

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           A    + H +     L+    +++ ID+  R  +  +H+  H L  A++    + +   G
Sbjct: 97  AVETRIVHRLAYAPDLQPGDRVIMQIDWPRRYAIMRHHTLAHFLFSAVNRYFSAGIGIKG 156

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I      F  +  K ++  +  +I+ +  D++AQ  P+        D+       L  
Sbjct: 157 CTIDAQKAVF--SLDKKLSEDDFCAIQAHTRDLLAQAHPLAVESAPETDS-------LFY 207

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            +Y +               +   CGGTHV +  E+    I          R   AI 
Sbjct: 208 WRYGE---------------TLIPCGGTHVQALSEVSDAAIFFHKKSTGRERSRIAIA 250


>gi|167463870|ref|ZP_02328959.1| hypothetical protein Plarl_15134 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 968

 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           + G+     L   +   K LA+  K      + R + + EE  KL++  A RK  L  E 
Sbjct: 159 LAGKEKEKALEHVESLKKELAAG-KNQHEETLQREQNLKEELSKLKIEAADRKKALEEEK 217

Query: 786 LSCHKIAD-VNFMSHIISEVDSK 807
               +++  +  +   + + D+ 
Sbjct: 218 HRSKELSGRIELLETDLEQSDAD 240


>gi|157133339|ref|XP_001656209.1| hypothetical protein AaeL_AAEL002981 [Aedes aegypti]
 gi|108881546|gb|EAT45771.1| conserved hypothetical protein [Aedes aegypti]
          Length = 558

 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-HKI 791
             +  + EK++ + + LK  Q +   +V ++  + ++ Q   A+ K +    ++   +++
Sbjct: 295 QRVNEEMEKIEDINNRLKNLQVDTDKKVSDLENQLKEAQKEAAEFKTKNEQLEIDIRNQV 354

Query: 792 ADVNFMSHIISEVDSKEL 809
           A ++ M   ISE D +++
Sbjct: 355 AKISVMESTISEKDKEQI 372


>gi|118349063|ref|XP_001033408.1| hypothetical protein TTHERM_00312270 [Tetrahymena thermophila]
 gi|89287757|gb|EAR85745.1| hypothetical protein TTHERM_00312270 [Tetrahymena thermophila
           SB210]
          Length = 1154

 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 735 LMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           L+ +  +L  L   L+ S   +     R++ I +E + L+    + K Q +  +    KI
Sbjct: 446 LIQKSNELNQLKKDLRQSNNELMQYKNRLKTIEQENKNLKQQFEQDKQQKHHLEEYIQKI 505

Query: 792 ADVNFMSHIISEVDSKELKS 811
             + F+      + S+ ++ 
Sbjct: 506 KGLQFIVAQEKRISSRIIQE 525


>gi|169824655|ref|YP_001692266.1| putative chimeric erythrocyte-binding protein [Finegoldia magna
           ATCC 29328]
 gi|325847199|ref|ZP_08169979.1| copper amine oxidase N-terminal domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|167831460|dbj|BAG08376.1| putative chimeric erythrocyte-binding protein [Finegoldia magna
           ATCC 29328]
 gi|325480930|gb|EGC83977.1| copper amine oxidase N-terminal domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 783

 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +KI
Sbjct: 305 IKDLENQIKDLNDKKQEDQTKIDELKEKLESCKDNGEKLKQEKAKLEEEIRDKD---NKI 361

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 362 AQLNKEIEELKNSNNDELIAEITQLKDELK 391



 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/84 (10%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--------LNVEDLS 787
               +  K +      +   ++  + ++ +E ++LQ  +AK K             ++ +
Sbjct: 359 NKIAQLNKEIEELKNSNNDELIAEITQLKDELKRLQDENAKLKEDYSSTKWELEAEKEKT 418

Query: 788 CHKIADVNFMSHIISEVDSKELKS 811
                 +  M   +  ++ +  K 
Sbjct: 419 DKNENKIKEMQEKLESLEGELAKK 442


>gi|253742035|gb|EES98889.1| Hypothetical protein GL50581_3867 [Giardia intestinalis ATCC 50581]
          Length = 671

 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 729 QRARSHLMGQDEKL----KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            RA   L  Q + +    K L   L+V + +    + E+  E    +  +   K +L   
Sbjct: 362 MRALGDLRKQLDTISDQNKELTELLEVERNDRNVAISELRAELHHYKAENETLKSRLKAL 421

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           D     +   N +       D +++++++  L+K+
Sbjct: 422 DEL--NVEG-NVLELERVTADIEDMQTMVKQLKKQ 453


>gi|118363058|ref|XP_001014877.1| hypothetical protein TTHERM_00051800 [Tetrahymena thermophila]
 gi|89296521|gb|EAR94509.1| hypothetical protein TTHERM_00051800 [Tetrahymena thermophila
           SB210]
          Length = 1427

 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 728 GQRARSHLMGQDE-KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           G   +  L  + + +L+ +     +    ++ +V+++ +E + L+     R L       
Sbjct: 877 GVEMKKQLEEKFQMQLEEIHYKNHIKVQKIMEKVKKLEDENKSLKHELQIRSLAAKELKE 936

Query: 787 S-------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           S          I D+     I  E++ + ++     L+ + ++
Sbjct: 937 SEARVANLAQSIQDIQIGKLIQDELEVRSMQEAYLKLKNEFKN 979


>gi|50510465|dbj|BAD32218.1| mKIAA0373 protein [Mus musculus]
          Length = 1370

 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI A+T Q+     +   + ++     LK    ++   + ++ E  +  +         L
Sbjct: 654 RIIAVTSQK--EANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDL 711

Query: 782 NVEDLSCHKI-ADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           N  +    K     N +      +D  + EL+  +  L   +QS  ++      + K S+
Sbjct: 712 NELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLI------DNKQSL 765

Query: 839 LIVVTEDLLDRFN 851
           +    ++L  +  
Sbjct: 766 I----DELQKKVK 774


>gi|73998474|ref|XP_863878.1| PREDICTED: similar to Serine/threonine-protein kinase 10
           (Lymphocyte-oriented kinase) isoform 5 [Canis
           familiaris]
          Length = 951

 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 618 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 674

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 675 QEQE---FVQKQQQELDG-ALKKIIQQQKAELAN 704


>gi|325478362|gb|EGC81477.1| copper amine oxidase N-terminal domain protein [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 783

 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +KI
Sbjct: 305 IKDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGEKLKQEKAKLEEEIRNKD---NKI 361

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 362 AQLNKEIEELKNSNNDELIAEITQLKDELK 391



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIAD 793
               +  K +      +   ++  + ++ +E ++LQ  +AK K        +L   K   
Sbjct: 359 NKIAQLNKEIEELKNSNNDELIAEITQLKDELKRLQDENAKLKEDYSSTKWELEAEKEK- 417

Query: 794 VNFMSHIISEVDSKELKSVMDALQK 818
                   ++ +  ++K + + L+ 
Sbjct: 418 --------TDKNENKIKEMQEKLKS 434



 Score = 37.4 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 40/124 (32%)

Query: 732 RSHLMGQDEKLKS---------LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
              L  ++ KLK           A   K  +     +++E+ E+ + L+   AK+  ++ 
Sbjct: 390 LKRLQDENAKLKEDYSSTKWELEAEKEKTDKNE--NKIKEMQEKLKSLEEELAKKTKEIE 447

Query: 783 VEDLSCHKIADVNFMSHIISEVDSK-----------------------ELKSVMDALQKK 819
            +D        +  +   + E D+K                       EL+  +D+L++ 
Sbjct: 448 DKD------NKIKGLEKALDEKDTKIKDLESKKKETENSKSECFKNIEELQKAIDSLKET 501

Query: 820 IQSG 823
            ++ 
Sbjct: 502 SENT 505


>gi|308189880|ref|YP_003922811.1| heat shock protein [Mycoplasma fermentans JER]
 gi|319777076|ref|YP_004136727.1| hypothetical protein MfeM64YM_0346 [Mycoplasma fermentans M64]
 gi|307624622|gb|ADN68927.1| heat shock protein [Mycoplasma fermentans JER]
 gi|318038151|gb|ADV34350.1| Hypothetical Protein MfeM64YM_0346 [Mycoplasma fermentans M64]
          Length = 417

 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            S+L  +++K    ++ LK         ++++ E+ +K    +   K     +     ++
Sbjct: 140 ISNLKTENDKHTKDSADLKNQYQEQEKTIQKLIEDNKKFIADNNALKEDNENKGKQIKEL 199

Query: 792 ---ADVNFM----SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL--IVV 842
                   M     H    V+   L+  +D L+K+++   I L  + K K    +  + V
Sbjct: 200 MSGKTTKLMEQTSEHEAKGVNPAVLRKQVDVLRKQLEEQSIELKELRKNKAPEAVQRVTV 259

Query: 843 TEDLLDRFN 851
            ++ +D+  
Sbjct: 260 PKEEVDKIK 268


>gi|294655312|ref|XP_002770113.1| DEHA2B11110p [Debaryomyces hansenii CBS767]
 gi|199429858|emb|CAR65482.1| DEHA2B11110p [Debaryomyces hansenii]
          Length = 847

 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 19/132 (14%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
                H      ++ SL   LK +  +    ++ + +E  +L+    K +L+LN  D+  
Sbjct: 469 DSLLEHQSQMKNEITSLEESLKTTLDSEQETLKSVTDENERLKTNLEKLQLKLNDSDMIA 528

Query: 789 HKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
            +     +  ++        K+L+        K +S ++ L    KE+K      ++E L
Sbjct: 529 KEKMNEQIKILAE-------KDLQ------ISKFKSQVVFL----KEEKEYSQAKLSEYL 571

Query: 847 LDRFNAVDLARL 858
            D   A    + 
Sbjct: 572 ADVEEANKQIKE 583


>gi|156042456|ref|XP_001587785.1| hypothetical protein SS1G_11025 [Sclerotinia sclerotiorum 1980]
 gi|154695412|gb|EDN95150.1| hypothetical protein SS1G_11025 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1360

 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            +L     ++K L+   + SQ +   RV  + ++  KLQ    K   +    +    +I 
Sbjct: 900 RNLADAQRRIKELSKEHQPSQTD-DSRVSALNKDIAKLQKEIEKLHAETASVE---EEIK 955

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +      +     +  ++++D+L+++I 
Sbjct: 956 GLQDKIMQVGGEKLRAQRAMVDSLKEEID 984


>gi|288940491|ref|YP_003442731.1| MCP methyltransferase/methylesterase, CheR/CheB [Allochromatium
           vinosum DSM 180]
 gi|288895863|gb|ADC61699.1| MCP methyltransferase/methylesterase, CheR/CheB [Allochromatium
           vinosum DSM 180]
          Length = 879

 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             +    E L+S    ++ SQ  +    EE+     +LQ  + +             ++ 
Sbjct: 648 REIQRLREALQSTREQMQTSQEELKSANEELQSTNEELQSTNEELTTSKEEMQSLNEELQ 707

Query: 793 DVNF-MSHIISEVD--SKELKSVMDA 815
            VN  +   + ++   + ++K+++D+
Sbjct: 708 TVNIELQAKVDDLSRVNDDMKNLLDS 733


>gi|145525998|ref|XP_001448810.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416376|emb|CAK81413.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1069

 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                 Q+  LK   +  +    N++ ++ ++ +  ++L     K +  LN       +I
Sbjct: 382 LRDKDAQNNSLKEKLARAEQDNKNLLDQINQLNQMIKQLNREIEKLQGDLNG------RI 435

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            ++N+++  + + +   ++++ D +  K+   I
Sbjct: 436 NEINYLNQQLQKCN-DNIRNLEDQI-NKLNDDI 466


>gi|3869099|dbj|BAA34354.1| Vesl-1L [Mus musculus]
          Length = 366

 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--AR 732
            V + +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     
Sbjct: 196 EVELATLKGTNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVH 255

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           SH    ++ ++ L   LKV +  +  R+++  +  R+LQ        +L   ++    + 
Sbjct: 256 SHKTELNQTVQELEETLKVKEEEI-ERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLE 314

Query: 793 D 793
            
Sbjct: 315 G 315


>gi|238809860|dbj|BAH69650.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 418

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            S+L  +++K    ++ LK         ++++ E+ +K    +   K     +     ++
Sbjct: 141 ISNLKTENDKHTKDSADLKNQYQEQEKTIQKLIEDNKKFIADNNALKEDNENKGKQIKEL 200

Query: 792 ---ADVNFM----SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL--IVV 842
                   M     H    V+   L+  +D L+K+++   I L  + K K    +  + V
Sbjct: 201 MSGKTTKLMEQTSEHEAKGVNPAVLRKQVDVLRKQLEEQSIELKELRKNKAPEAVQRVTV 260

Query: 843 TEDLLDRFN 851
            ++ +D+  
Sbjct: 261 PKEEVDKIK 269


>gi|240102921|ref|YP_002959230.1| recJ-like single-stranded exonuclease recJ-like protein (recJ)
           [Thermococcus gammatolerans EJ3]
 gi|239910475|gb|ACS33366.1| recJ-like single-stranded exonuclease recJ-like protein (recJ)
           [Thermococcus gammatolerans EJ3]
          Length = 476

 Score = 41.7 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 63/189 (33%), Gaps = 35/189 (18%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQ---------GNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
             H   +   L +    L                  +  ++ ++Y++ Q+   K  +Q  
Sbjct: 291 VRHEAREFATLLNATGRLNAGTLGVAICLGDEEAYRKARKMLDDYKREQIEARKFIIQ-- 348

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI---------QSGIIMLVGISKE 833
             + S  +  +  ++ +       K ++  +  +   I         +  ++++    ++
Sbjct: 349 --NWSMAEEGEHAYVFYA-----GKSIRDTLVGIAANIAINAGLADPEKPVVVIADSEED 401

Query: 834 KKASVLIVVT--EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN--GNKADQAI 889
           +        T  + L   ++  +  R  A+ LGG GGG     A + G      + D+ I
Sbjct: 402 ENLVKGSARTTEKALAKGYHLGEALREVAEKLGGEGGG----HAIAAGIRFPKERIDEFI 457

Query: 890 AGVASFLKK 898
                 L K
Sbjct: 458 KLFNEALAK 466


>gi|149708525|ref|XP_001488281.1| PREDICTED: centromere protein F, 350/400ka (mitosin) isoform 1 [Equus
            caballus]
          Length = 3110

 Score = 41.7 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 9/119 (7%)

Query: 703  GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
             E+ LL    E    +    ++A T       L          A+ LK       G+++ 
Sbjct: 2740 AEMDLLKSSKEELSNS----LKATT--EILEELKKAKMDNLKHANQLKKENERAQGKIKL 2793

Query: 763  IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKK 819
            + +  ++L+      + +L+  + +  K      +   + E+  + KELK  ++  + K
Sbjct: 2794 LIKSCKQLEAEKEMLQKELSRLEAAQEKQKTGTVVDANVDELMTEMKELKETLEE-KNK 2851


>gi|109119096|ref|XP_001111712.1| PREDICTED: 39S ribosomal protein L12, mitochondrial [Macaca
           mulatta]
          Length = 198

 Score = 41.7 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 61/192 (31%), Gaps = 35/192 (18%)

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
                      +G RR EA+ G                  + L  +      +++++ ++
Sbjct: 29  PCVCAMRHMRSSGHRRCEALAG------------------APLDNAPKEYPPKIQQLVQD 70

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG--- 823
              L L+      +L  + L    +  V     +   V +   + V++    + +     
Sbjct: 71  IASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMPGAVPAAAAQEVVEEEIPRAKERTHF 130

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFN---AVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            + L   +   K  ++  + ++ +   N   A  L     + +       + ++A++   
Sbjct: 131 TVRLTEANPVDKVKLIKEI-KNYVQGINLVQAKKLVESLPQEI-------KANVAKA--- 179

Query: 881 NGNKADQAIAGV 892
              K   A+  V
Sbjct: 180 EAEKIKAALEAV 191


>gi|291279511|ref|YP_003496346.1| ABC transporter substrate-binding protein [Deferribacter
           desulfuricans SSM1]
 gi|290754213|dbj|BAI80590.1| ABC transporter, substrate-binding protein [Deferribacter
           desulfuricans SSM1]
          Length = 526

 Score = 41.7 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 53/156 (33%), Gaps = 23/156 (14%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITG------QRARSHLMGQDEKLKSLASFLKVSQGN 755
           T  I  +   ++  I   ++ IEAIT       +  + ++      LK ++  LK     
Sbjct: 180 TEYIRQMLEENQKRINQIVKNIEAITASIKNVTEANQENVNQLITNLKEVSETLKNQTPQ 239

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +  ++  I      L           N +      I+++  ++  + +     L  + D 
Sbjct: 240 IAKKINNITTNIDDLV---------GNSKGDLRETISNIKVVTAKLEKT-VDNLNDITDK 289

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           +  K +  +  L+  ++  K        +D +    
Sbjct: 290 I-NKGKGTVGTLINDNETAKDV------KDTIKGLK 318


>gi|221503431|gb|EEE29129.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 5047

 Score = 41.7 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            R++ I G +         EK   L   ++ S   +  +++   E   +LQ    + +++ 
Sbjct: 4792 RMKEIAGMKVLDLDKILKEKEAELKKQMEASIAALREKLKAQQEREEQLQREKHEAEMKK 4851

Query: 782  NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
              E+    ++  +  M +     D        D + KK Q   
Sbjct: 4852 RKEEQRARRLKQLRRMINSAQPDDP----EAADDIFKKYQDDA 4890


>gi|221482775|gb|EEE21106.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 5074

 Score = 41.7 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            R++ I G +         EK   L   ++ S   +  +++   E   +LQ    + +++ 
Sbjct: 4792 RMKEIAGMKVLDLDKILKEKEAELKKQMEASIAALREKLKAQQEREEQLQREKHEAEMKK 4851

Query: 782  NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
              E+    ++  +  M +     D        D + KK Q   
Sbjct: 4852 RKEEQRARRLKQLRRMINSAQPDDP----EAADDIFKKYQDDA 4890


>gi|237840529|ref|XP_002369562.1| hypothetical protein TGME49_007480 [Toxoplasma gondii ME49]
 gi|211967226|gb|EEB02422.1| hypothetical protein TGME49_007480 [Toxoplasma gondii ME49]
          Length = 5047

 Score = 41.7 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            R++ I G +         EK   L   ++ S   +  +++   E   +LQ    + +++ 
Sbjct: 4792 RMKEIAGMKVLDLDKILKEKEAELKKQMEASIAALREKLKAQQEREEQLQREKHEAEMKK 4851

Query: 782  NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
              E+    ++  +  M +     D        D + KK Q   
Sbjct: 4852 RKEEQRARRLKQLRRMINSAQPDDP----EAADDIFKKYQDDA 4890


>gi|95007270|emb|CAJ20490.1| hypothetical protein TgIb.0180 [Toxoplasma gondii RH]
          Length = 3344

 Score = 41.7 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            R++ I G +         EK   L   ++ S   +  +++   E   +LQ    + +++ 
Sbjct: 3089 RMKEIAGMKVLDLDKILKEKEAELKKQMEASIAALREKLKAQQEREEQLQREKHEAEMKK 3148

Query: 782  NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
              E+    ++  +  M +     D        D + KK Q   
Sbjct: 3149 RKEEQRARRLKQLRRMINSAQPDDP----EAADDIFKKYQDDA 3187


>gi|73969994|ref|XP_531770.2| PREDICTED: similar to GRIP and coiled-coil domain-containing 2
            isoform a [Canis familiaris]
          Length = 1814

 Score = 41.7 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED--LSCH 789
               L  Q   L      L     +++ R+E +    + L++   + +    V D  L   
Sbjct: 1177 IEDLTRQLRNLTFQCEKLNSDNEDLLARIETLQSNVKLLEVQILEVQKAKAVADKELEAE 1236

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            K+     +    S ++  EL+ +   LQK+ +
Sbjct: 1237 KLQKEQKIKEHASSIN--ELEEIQLQLQKEKK 1266


>gi|326782883|ref|YP_004323281.1| recombination endonuclease subunit [Prochlorococcus phage P-RSM4]
 gi|310004142|gb|ADO98536.1| recombination endonuclease subunit [Prochlorococcus phage P-RSM4]
          Length = 573

 Score = 41.7 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           A   +  Q+  + +LA      Q +   +++   E+ +  +      K ++    +    
Sbjct: 194 AEERVNNQERIISTLADVSATRQKDKKSKIKNNNEKIKSEEKQRDLLKEEVETLTIGLKN 253

Query: 791 IADVNFMSHII--SEVDSK-ELKSVMDALQ 817
           + +   +   +   + D   ELKS    L+
Sbjct: 254 VDNHKAVLDDLRQEQSDINSELKSAAKQLK 283


>gi|322383717|ref|ZP_08057468.1| hypothetical protein PL1_1637 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151929|gb|EFX44872.1| hypothetical protein PL1_1637 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 927

 Score = 41.7 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           + G+     L   +   K LA+  K      + R + + EE  KL++  A RK  L  E 
Sbjct: 118 LAGKEKEKALEHVESLKKELAAG-KNQHEETLQREQNLKEELSKLKIEAADRKKALEEEK 176

Query: 786 LSCHKIAD-VNFMSHIISEVDSK 807
               +++  +  +   + + D+ 
Sbjct: 177 HRSKELSGRIELLETDLEQSDAD 199


>gi|289597049|ref|YP_003483745.1| phosphoesterase RecJ domain protein [Aciduliprofundum boonei T469]
 gi|289534836|gb|ADD09183.1| phosphoesterase RecJ domain protein [Aciduliprofundum boonei T469]
          Length = 420

 Score = 41.7 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +GI  +    +    ++ L+ + +  D+ R +A   GG GGG    +A +G       ++
Sbjct: 348 LGIFVDDMVHISARGSKYLVPKVHLGDIMREAASKFGGNGGG--HDIA-AGATIPKGTEE 404

Query: 888 AIAGVASFLKK 898
                  FLK+
Sbjct: 405 ------EFLKE 409


>gi|115395040|ref|XP_001213469.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193038|gb|EAU34738.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 566

 Score = 41.7 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 22/158 (13%)

Query: 674 DRVRVVSVEYEDGGVHSSALCG-----GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            R   V  +  + G+    LC         V  T        + +   +   +R +++T 
Sbjct: 116 HRPSYVPFQRVNDGICDYELCCDGSDEWARVGGTKCEDRCKEIGKEWRKQEEKRQKSMT- 174

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-------RKLQLIHAKRKLQL 781
               + +  +   L      LK     V   ++ +  E        R L+    + + Q 
Sbjct: 175 ----AAMKKKKGLLVDADRQLK----EVEDGIKRLEAELQGEEIKVRNLEADLEEIEKQE 226

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
               +   K   VN ++ +      +EL++ +  ++K+
Sbjct: 227 RSRVVKGKKAGKVNVLAQVAKGR-VEELRTALVDVRKE 263


>gi|322790005|gb|EFZ15081.1| hypothetical protein SINV_05857 [Solenopsis invicta]
          Length = 1584

 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 9/110 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK- 790
              +  + +  + LAS +  S+     R+ ++ EE +      A+ +     +     K 
Sbjct: 696 VRIIQEKQKLEQDLASLI-ASEEESTARLNKLSEELKVKDKELAELRNATVAQIGEITKR 754

Query: 791 ----IAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
               I D V  +  I ++V  K L  ++  L+K I     ++    +E K
Sbjct: 755 FEAQINDKVKCIEQINADVTQKAL--LLVKLEKDIADLKAIIASKDEEIK 802


>gi|254167146|ref|ZP_04873999.1| DHH family [Aciduliprofundum boonei T469]
 gi|197624002|gb|EDY36564.1| DHH family [Aciduliprofundum boonei T469]
          Length = 420

 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +GI  +    +    ++ L+ + +  D+ R +A   GG GGG    +A +G       ++
Sbjct: 348 LGIFVDDMVHISARGSKYLVPKVHLGDIMREAASKFGGNGGG--HDIA-AGATIPKGTEE 404

Query: 888 AIAGVASFLKK 898
                  FLK+
Sbjct: 405 ------EFLKE 409


>gi|218245600|ref|YP_002370971.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|257058646|ref|YP_003136534.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|218166078|gb|ACK64815.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|256588812|gb|ACU99698.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 607

 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H++  A+  +        G   T  G  +D    +P T   LK I+  +  II + 
Sbjct: 31  HTTSHIMAMAVQKLFPKAQVTIGPW-TETGFYYDFDVPEPFTEQNLKDIKKEMIKIINRK 89

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVSSTG 703
           LPV+   +  E+A        L   Y   +       +     G     LC G HV +TG
Sbjct: 90  LPVIREEVTPEEA--KKRIEQLQEPYKLEILEGLQPPITLYHLGDQWWDLCAGPHVETTG 147

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           +I         ++     R     G   ++ L                +   +      +
Sbjct: 148 DINP-KAFDLETVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLTEYKRRK 194

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++RKL    
Sbjct: 195 EEALKRDHRKLGKEL 209


>gi|325846644|ref|ZP_08169559.1| DNA repair protein RecN [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481402|gb|EGC84443.1| DNA repair protein RecN [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 563

 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 729 QRARSHLMGQDEKLKSLASF--LKVSQGNVVGRVEEIWEE-------YRKLQLIHAKRKL 779
           +    +      +LK L      K +    + +++   EE        RK + I+ ++++
Sbjct: 323 EDILKYHQKISLRLKELEKISDFKKNINKNIEKIDSKLEEYSKKLSSIRKEKSINLEKEI 382

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
           +  ++ L+     D   +    + +DS  + ++   ++      +  L   +   + S +
Sbjct: 383 KKEIQSLNIKN-GDFKVVFMEKTNIDSNGIDNIDFLIKTNKGEDLKSLSSTASGGEISRI 441

Query: 840 IVVTEDLLDRFN 851
           ++  + +   ++
Sbjct: 442 VLSFKKIFADYD 453


>gi|240143772|ref|ZP_04742373.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257204242|gb|EEV02527.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 585

 Score = 41.7 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 17/136 (12%)

Query: 727 TGQRARSHLMGQDEK-----LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            G+  + +L   + +               ++  +   + +   E +KL +   K KL+L
Sbjct: 316 VGKSLQDYLDELENEDNWNDEDDWEEPEGYTEKELAEAINDKESEVKKLDIQLRKLKLEL 375

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGISKEKKASVLI 840
                S +       +   +  V    +KSV D   ++   +  ++   ++ +    V  
Sbjct: 376 ETLQDSIND----GVVYAKLDGV----VKSVGDPDQKQDDGNAFLV---VTGDDGLYVSG 424

Query: 841 VVTEDLLDRFNAVDLA 856
            ++E LLD      + 
Sbjct: 425 TISELLLDEVKPGTVV 440


>gi|119469795|ref|ZP_01612633.1| putative ATPase subunit of ATP-dependent protease [Alteromonadales
           bacterium TW-7]
 gi|119446778|gb|EAW28050.1| putative ATPase subunit of ATP-dependent protease [Alteromonadales
           bacterium TW-7]
          Length = 910

 Score = 41.7 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 51/394 (12%), Positives = 121/394 (30%), Gaps = 25/394 (6%)

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ-TP 519
           + L  +   +   K         L       + A  +QG+I        ++ ++ D    
Sbjct: 159 ERLNPAAKSQSANKSENSNDSAALDEYCE-DLTAKAEQGKIDPVLGRNDEIRMMVDVLCR 217

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQIT---DVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
                   +GD G      +        D Q   +   V   +++ G+L+    +    +
Sbjct: 218 RRKNNPILVGDPGVGKTAVVEGFAQRIVDGQVPQDLQGVRLLVLDMGLLQAGAGVKGEFE 277

Query: 577 YQNRR--QLSINHSATHLL-----HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + +       N S   ++     H  +     + +S   + + P   R ++      T 
Sbjct: 278 RRLKAVIDEVKNSSTPIIMFIDEAHTLIGAGGDAGMSDAANLLKPALARGELRTVAATTW 337

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           +E K   +   D   +    + ++    +  A    A L  KY     +   +       
Sbjct: 338 SEYKKYFER--DAALERRFQLIKVDEPTEQAAQLMLAGLKDKYQQHHNIQITDDAIEAAV 395

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS----HLMGQDEKLKSL 745
             +         TG  +    +      A   R+   T   A      H+   + ++ SL
Sbjct: 396 VLSSR-----YITGRYLPDKAIDVLDTAAARVRMSFATDPAAIEAEREHINYLETRINSL 450

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
              L         ++  + EE    Q   A+       +  +  +I ++        ++D
Sbjct: 451 NIELGQGLAVDQDKLTHLVEELVNAQSKLAELTHSRESQISTLSQINEIK--QASDKDLD 508

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
           S+ L  +  +L+++      +   +  +  A ++
Sbjct: 509 SESLLMLRQSLKEQNTQDNGLFSEVDADAVAQII 542


>gi|291537257|emb|CBL10369.1| Membrane-fusion protein [Roseburia intestinalis M50/1]
          Length = 585

 Score = 41.7 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 17/136 (12%)

Query: 727 TGQRARSHLMGQDEK-----LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            G+  + +L   + +               ++  +   + +   E +KL +   K KL+L
Sbjct: 316 VGKSLQDYLDELENEDNWNDEDDWEEPEGYTEKELAEAINDKESEVKKLDIQLRKLKLEL 375

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGISKEKKASVLI 840
                S +       +   +  V    +KSV D   ++   +  ++   ++ +    V  
Sbjct: 376 ETLQDSIND----GVVYAKLDGV----VKSVGDPDQKQDDGNAFLV---VTGDDGLYVSG 424

Query: 841 VVTEDLLDRFNAVDLA 856
            ++E LLD      + 
Sbjct: 425 TISELLLDEVKPGTVV 440


>gi|149067072|gb|EDM16805.1| similar to Hypothetical protein KIAA0373 (predicted) [Rattus
            norvegicus]
          Length = 1711

 Score = 41.7 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            RI A+T Q+     +   + ++     LK    ++   + ++ E  +  +         L
Sbjct: 1206 RIIAVTSQK--EANLNVQQVVERHTKELKSQIEDLNENLLKLKEALKTSKNKENSLADDL 1263

Query: 782  NVEDLSCHKI-ADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            N  +    K     N +      +D  + EL+  +  L   +QS  ++      + K S+
Sbjct: 1264 NDLNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLI------DNKQSL 1317

Query: 839  LIVVTEDLLDRFN 851
            +    ++L  +  
Sbjct: 1318 I----DELQKKVK 1326


>gi|126339824|ref|XP_001376000.1| PREDICTED: similar to myosin, heavy chain 9, non-muscle [Monodelphis
            domestica]
          Length = 1960

 Score = 41.7 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 65/178 (36%), Gaps = 17/178 (9%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 1070 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNK 1129

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +VN +   + + ++K  ++ + 
Sbjct: 1130 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLDD-EAKTHEAQIQ 1188

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA-----VDLARLSAKVLGGGG 867
             +++K    +  L    ++ K      V  +L     A      +L+     +L G G
Sbjct: 1189 EMRQKHSQAVEELAEQLEQTKR-----VKANLEKAKQALESERAELSNEVKALLQGKG 1241


>gi|119487437|ref|XP_001262511.1| Viral A-type inclusion protein repeat protein [Neosartorya fischeri
           NRRL 181]
 gi|119410668|gb|EAW20614.1| Viral A-type inclusion protein repeat protein [Neosartorya fischeri
           NRRL 181]
          Length = 1198

 Score = 41.7 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 42/95 (44%), Gaps = 13/95 (13%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             +    E+ + L + LK         +E++ ++  + +    +++LQ  +E+++  K A
Sbjct: 402 DTIAKAGEEAEKLKAELKQKTEE----IEKLQDQATQPKDNDQQKELQEKLEEVAREKAA 457

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
               +           L+ ++D L+ +++   +++
Sbjct: 458 SEKKLGV---------LQGLVDNLRSQLKDTEVVV 483


>gi|114632697|ref|XP_001136998.1| PREDICTED: similar to protein kinase isoform 2 [Pan troglodytes]
          Length = 968

 Score = 41.7 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 635 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 691

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 692 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 721


>gi|194758924|ref|XP_001961706.1| GF14797 [Drosophila ananassae]
 gi|190615403|gb|EDV30927.1| GF14797 [Drosophila ananassae]
          Length = 339

 Score = 41.7 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 6/231 (2%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLH-HALSTILGSHVSQNGSCITPDGL-RFDV 621
            ++   +++L    Q R ++         LH  ++ T    HV      +         +
Sbjct: 42  SMKVFTTIMLHAWRQRREEVRHLQKVVQTLHTRSMKTRNKLHVCDTLIRVEQKRNSELQL 101

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
              +                    +L      +           A L    N   R +  
Sbjct: 102 QLKQSTLDINQVRTSCESLASTVHDLTADKMQLQTNLHQREKEYAELEEISNQTKRELFG 161

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                      LC    V+   +     ++SE  I  G    EA T ++A+     +  +
Sbjct: 162 SLMQQRNLQHELCDRQRVAQKLQSENEQLISEVVIMEGK---EAKT-KKAQEWYQREMAR 217

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
              L   +     ++V +V  + ++ R+L+ +   ++    +      KI 
Sbjct: 218 KDELIRTMNGEIASLVEKVRTLADQNRELEKLREGKEKIDALVSELSEKIQ 268


>gi|57641532|ref|YP_184010.1| V-type ATP synthase subunit I [Thermococcus kodakarensis KOD1]
 gi|74502607|sp|Q5JDS2|VATI_PYRKO RecName: Full=V-type ATP synthase subunit I; AltName: Full=V-ATPase
           subunit I
 gi|57159856|dbj|BAD85786.1| archaeal/vacuolar-type H+-ATPase, subunit I [Thermococcus
           kodakarensis KOD1]
          Length = 663

 Score = 41.7 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 735 LMGQDEKLKSLASFL-KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
               ++ +K +  FL KV        ++ I      L     + K Q+ + D+      D
Sbjct: 95  YERLEKLIKDVEEFLGKVEPE-----IKAIEGRMNSLSTEIERIKEQIGILDILTPLNID 149

Query: 794 VN------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           V+       +   +  VD   +K + DAL+K+ ++  + ++      KA V+IV
Sbjct: 150 VSYLRHCGVVEVTVGLVDRTRVKELADALKKETENH-VAIITKEASDKALVVIV 202


>gi|291539202|emb|CBL12313.1| Membrane-fusion protein [Roseburia intestinalis XB6B4]
          Length = 540

 Score = 41.7 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 17/136 (12%)

Query: 727 TGQRARSHLMGQDEK-----LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            G+  + +L   + +               ++  +   + +   E +KL +   K KL+L
Sbjct: 316 VGKSLQDYLDELENEDNWNDEDDWEEPEGYTEKELAEAINDKESEVKKLDIQLRKLKLEL 375

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGISKEKKASVLI 840
                S +       +   +  V    +KSV D   ++   +  ++   ++ +    V  
Sbjct: 376 ETLQDSIND----GVVYAKLDGV----VKSVGDPDQKQDDGNAFLV---VTGDDGLYVSG 424

Query: 841 VVTEDLLDRFNAVDLA 856
            ++E LLD      + 
Sbjct: 425 TISELLLDEVKPGTVV 440


>gi|26325892|dbj|BAC26700.1| unnamed protein product [Mus musculus]
          Length = 808

 Score = 41.7 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI A+T Q+     +   + ++     LK    ++   + ++ E  +  +         L
Sbjct: 92  RIIAVTSQK--EANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDL 149

Query: 782 NVEDLSCHKI-ADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           N  +    K     N +      +D  + EL+  +  L   +QS  ++      + K S+
Sbjct: 150 NELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLI------DNKQSL 203

Query: 839 LIVVTEDLLDRFN 851
           +    ++L  +  
Sbjct: 204 I----DELQKKVK 212


>gi|254567425|ref|XP_002490823.1| Myosin-2 [Pichia pastoris GS115]
 gi|238030619|emb|CAY68543.1| Myosin-2 [Pichia pastoris GS115]
 gi|328351204|emb|CCA37604.1| Myosin-4 [Pichia pastoris CBS 7435]
          Length = 1559

 Score = 41.7 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 14/171 (8%)

Query: 671  KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA--ITG 728
            +YN   +V+ +        ++       +    E +     +  +++   R IE   I  
Sbjct: 926  QYNLENKVIELTQSLTDKIAANKDLVKEIDRLKETVAESSEAHETLKK--REIEFKDILS 983

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            ++   HL   +     LA   K +    + R EE+ E+   L+   A+    L    +  
Sbjct: 984  EKENDHLTKTESLALELAEA-KATYEASLKRTEELLEQQETLKKEVAENVAALTKARVEL 1042

Query: 789  HKIADVNF-MSHIISEVDSKELKSVMDALQKKIQ---SGIIMLVGISKEKK 835
                D N  ++  ++      LK+ +D L+K+++   SG +   G+    K
Sbjct: 1043 ELKNDENTSLNETVTR-----LKTDIDNLRKELEKARSGSVFQQGVLSGNK 1088


>gi|227486108|ref|ZP_03916424.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235872|gb|EEI85887.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 656

 Score = 41.7 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 26/124 (20%)

Query: 739 DEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQL-------NVEDLSC 788
           D +L  L    K +         R+ ++ +E + L     K+ ++L       N  D   
Sbjct: 464 DNELDKLNKLEKDNPQEAKAEYKRIADLVKEAKDLNKKANKKLIELDEINLIDNNTDPLA 523

Query: 789 HKIADVNF------------MSHIISEVDSKELKSVMDALQKKIQSGI----IMLVGISK 832
            K                  +S +  +   +  ++    L+KK++  I     + +G   
Sbjct: 524 SKAKGTKLVLNLGKLTPLSTISDLTKDSPRQSERNFSKDLKKKLEEAIKKVDTVTIGEKD 583

Query: 833 EKKA 836
           +KKA
Sbjct: 584 DKKA 587


>gi|255100079|ref|ZP_05329056.1| exonuclease subunit C [Clostridium difficile QCD-63q42]
          Length = 1175

 Score = 41.7 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 10/128 (7%)

Query: 728 GQRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G++ +     Q + LK L S L         V   + +   E + L+        + N  
Sbjct: 182 GEKVKKRKNIQLQNLKDLKSKLSQYDGITEEVYNNINQELIELKNLEKD------KNNAL 235

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQK-KIQSGIIMLVGISKEKKASVLIVVT 843
           DL+     +   +     +++  EL+     L+  +I+  I ++   S  KK    I   
Sbjct: 236 DLAQKSYEESKTVYEEQLKLEKNELRKNELDLKNSEIKEKIALVENDSNAKKVDPYISSV 295

Query: 844 EDLLDRFN 851
           ++L  + +
Sbjct: 296 QNLEKKID 303


>gi|224131432|ref|XP_002321083.1| predicted protein [Populus trichocarpa]
 gi|118486447|gb|ABK95063.1| unknown [Populus trichocarpa]
 gi|222861856|gb|EEE99398.1| predicted protein [Populus trichocarpa]
          Length = 192

 Score = 41.7 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-LSCHKIADVN 795
            + ++ K +    +  +  +   + +   E RK++    KRK    ++      KI +  
Sbjct: 101 EERDREKEIKKAYRERKNELKEEIRKNKVEKRKMREEREKRKQDNILKSGTKLQKITNPK 160

Query: 796 FMSHIISEVDSKELKSVMDALQKK 819
            +  I    D K LK V D L  K
Sbjct: 161 TLKKIAKSKDRKLLKVVPDDLVNK 184


>gi|6606214|gb|AAF19116.1|AF143461_1 BdrC3 [Borrelia hermsii]
          Length = 332

 Score = 41.7 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 42/95 (44%), Gaps = 11/95 (11%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              + K+ ++ + LK    ++  +++ +  E +        +     ++++     +D+ 
Sbjct: 78  NNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNK-----IDNVRNELKSDIK 132

Query: 796 FMSHIISEV------DSKELKSVMDALQKKIQSGI 824
            + + I  V      D K+L + +D ++ +++S I
Sbjct: 133 DLDNKIDNVRNELKSDIKDLDNKIDNVRNELKSDI 167



 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 51/109 (46%), Gaps = 14/109 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR------KLQLN 782
              +S +   D K+ ++ + LK    ++  +++ +  E +        +      +L+ +
Sbjct: 89  NELKSDIKDLDNKIDNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNKIDNVRNELKSD 148

Query: 783 VEDLSCHKIADV-NFMSHIISEVDSK------ELKSVMDALQKKIQSGI 824
           ++DL  +KI +V N +   I ++D+K       L   +D ++ +++S I
Sbjct: 149 IKDLD-NKIDNVRNELKSDIKDLDNKIDTVENNLNIKIDNVRNELKSDI 196



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 49/107 (45%), Gaps = 15/107 (14%)

Query: 732 RSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--- 787
             +L       L+ + + LK    ++  +++ + E    +++ + + +L+ +++DL    
Sbjct: 44  IEYLETTFNLKLEKVGASLKSDIKDLDNKIDTV-ENNLNIKIDNVRNELKSDIKDLDNKI 102

Query: 788 ----CHKIADVNFMSHIISEV------DSKELKSVMDALQKKIQSGI 824
                   +D+  + + I  V      D K+L + +D ++ +++S I
Sbjct: 103 DNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNKIDNVRNELKSDI 149


>gi|50914519|ref|YP_060491.1| LPXTG anchored putative adhesin [Streptococcus pyogenes MGAS10394]
 gi|40218526|gb|AAR83180.1| LPXTG anchored putative adhesin [Streptococcus pyogenes]
 gi|50903593|gb|AAT87308.1| LPXTG anchored putative adhesin [Streptococcus pyogenes MGAS10394]
 gi|51574130|gb|AAU07987.1| surface protein [Streptococcus pyogenes]
          Length = 1123

 Score = 41.7 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 13/96 (13%)

Query: 729 QRARSHLMGQDEKLKS---LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           +     +  ++  LK    ++  L      +   ++ +  + ++L+    + K  L    
Sbjct: 48  KELSEKINKRERLLKEKSEISDKLSKENERLNKEIKTLNNKIKELESKQEENKKMLEFFK 107

Query: 786 LSCHKIADVNFMSHIISEVDSKELK---SVMDALQK 818
               K            E  +K+LK    ++D L+K
Sbjct: 108 EKLQKANGEK-------ETLAKDLKEKDEMIDELKK 136


>gi|46105599|ref|XP_380558.1| hypothetical protein FG00382.1 [Gibberella zeae PH-1]
          Length = 1459

 Score = 41.7 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVEDLSC 788
             L  Q E LK   + +  ++ +++  +E +     EE + L++     K +L   +   
Sbjct: 691 EDLKAQHEDLKGQMAEINTTKQDLLENMEALEREFVEERKNLEIEIKTLKARLEDTEDEI 750

Query: 789 HKIADVN-----FMSHIISEVDSK 807
            +  +        +   + E++++
Sbjct: 751 EQFDESRQHEKAGLVVRVEELEAE 774


>gi|327297761|ref|XP_003233574.1| viral A-type inclusion protein repeat protein [Trichophyton rubrum
           CBS 118892]
 gi|326463752|gb|EGD89205.1| viral A-type inclusion protein repeat protein [Trichophyton rubrum
           CBS 118892]
          Length = 1168

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            +L  + E L+     L         +V+E+  E   L+   A+ + ++    LS  + +
Sbjct: 617 ENLREEIETLQDEVVSLGQDHVEAKDKVKELLAEKSALEKRAAEFEKEIASLRLSSTQSS 676

Query: 793 DV----NFMSHIISEVDSKEL 809
           D       +S    ++ SK L
Sbjct: 677 DAEKAHKGLSVEFEDLKSKAL 697


>gi|260682667|ref|YP_003213952.1| exonuclease subunit C [Clostridium difficile CD196]
 gi|260686266|ref|YP_003217399.1| exonuclease subunit C [Clostridium difficile R20291]
 gi|260208830|emb|CBA61750.1| exonuclease subunit C [Clostridium difficile CD196]
 gi|260212282|emb|CBE03033.1| exonuclease subunit C [Clostridium difficile R20291]
          Length = 1179

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 10/128 (7%)

Query: 728 GQRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G++ +     Q + LK L S L         V   + +   E + L+        + N  
Sbjct: 186 GEKVKKRKNIQLQNLKDLKSKLSQYDGITEEVYNNINQELIELKNLEKD------KNNAL 239

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQK-KIQSGIIMLVGISKEKKASVLIVVT 843
           DL+     +   +     +++  EL+     L+  +I+  I ++   S  KK    I   
Sbjct: 240 DLAQKSYEESKTVYEEQLKLEKNELRKNELDLKNSEIKEKIALVENDSNAKKVDPYISSV 299

Query: 844 EDLLDRFN 851
           ++L  + +
Sbjct: 300 QNLEKKID 307


>gi|123457452|ref|XP_001316453.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121899160|gb|EAY04230.1| hypothetical protein TVAG_474360 [Trichomonas vaginalis G3]
          Length = 1042

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            +H+   +E+  +LA   +    ++VG++  + +E  KL      +K +      S  + 
Sbjct: 775 INHVNEMEERTNALAGKYETQVADLVGQINNVKQENAKLSNDLVNKKAESQELQQSLEE- 833

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
                 +   +E  +KEL   ++  + K+   
Sbjct: 834 ------AQYENEQLAKELDQTVEDFKNKLNQA 859


>gi|126698627|ref|YP_001087524.1| exonuclease subunit C [Clostridium difficile 630]
 gi|115250064|emb|CAJ67884.1| Nuclease SbcCD subunit C [Clostridium difficile]
          Length = 1175

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 10/128 (7%)

Query: 728 GQRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G++ +     Q + LK L S L         V   + +   E + L+        + N  
Sbjct: 182 GEKVKKRKNIQLQNLKDLKSKLSQYDGITEEVYNNINQELIELKNLEKD------KNNAL 235

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQK-KIQSGIIMLVGISKEKKASVLIVVT 843
           DL+     +   +     +++  EL+     L+  +I+  I ++   S  KK    I   
Sbjct: 236 DLAQKSYEESKTVYEEQLKLEKNELRKNELDLKNSEIKEKIALVENDSNAKKVDPYISSV 295

Query: 844 EDLLDRFN 851
           ++L  + +
Sbjct: 296 QNLEKKID 303


>gi|254974594|ref|ZP_05271066.1| exonuclease subunit C [Clostridium difficile QCD-66c26]
 gi|255091985|ref|ZP_05321463.1| exonuclease subunit C [Clostridium difficile CIP 107932]
 gi|255313719|ref|ZP_05355302.1| exonuclease subunit C [Clostridium difficile QCD-76w55]
 gi|255516401|ref|ZP_05384077.1| exonuclease subunit C [Clostridium difficile QCD-97b34]
 gi|255649500|ref|ZP_05396402.1| exonuclease subunit C [Clostridium difficile QCD-37x79]
 gi|306519632|ref|ZP_07405979.1| exonuclease subunit C [Clostridium difficile QCD-32g58]
          Length = 1175

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 10/128 (7%)

Query: 728 GQRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G++ +     Q + LK L S L         V   + +   E + L+        + N  
Sbjct: 182 GEKVKKRKNIQLQNLKDLKSKLSQYDGITEEVYNNINQELIELKNLEKD------KNNAL 235

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQK-KIQSGIIMLVGISKEKKASVLIVVT 843
           DL+     +   +     +++  EL+     L+  +I+  I ++   S  KK    I   
Sbjct: 236 DLAQKSYEESKTVYEEQLKLEKNELRKNELDLKNSEIKEKIALVENDSNAKKVDPYISSV 295

Query: 844 EDLLDRFN 851
           ++L  + +
Sbjct: 296 QNLEKKID 303


>gi|28376403|gb|AAM96935.1| major surface protein 3 [Anaplasma marginale]
          Length = 444

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 20/139 (14%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q     L  +  +L+ L          +  ++EE+    R+L+    K      +E L  
Sbjct: 90  QEVVKTLEEKKSELQELKEI-----KEIKDKLEELAA-IRRLKGEIEKINEPGELEALEA 143

Query: 789 HKIADVNFMSHI--------------ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K+ +V     +              + E+++K LK +    +KK++     L  I    
Sbjct: 144 KKLEEVKAEFKVKGSELETHLEREWLLDELEAKTLKEIKQEWEKKLEGLKDKLAAIRGVG 203

Query: 835 KASVLIVVTEDLLDRFNAV 853
           K   L+    ++  + +AV
Sbjct: 204 KLQELVQKEREIKGKLDAV 222


>gi|297695163|ref|XP_002824835.1| PREDICTED: kinectin-like [Pongo abelii]
          Length = 1335

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 22/148 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  ++ +LK L + LK  + ++  +   ++++ +E +  +    + K Q   +  S    
Sbjct: 913  LKEKENELKRLEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPH 972

Query: 792  AD-VNFMSHIISEVDS-----KELKSVM-------DALQKKIQSGIIMLVGISK--EKKA 836
             + +  +S    E+         LK  +       + L++K    +  L    K  + K 
Sbjct: 973  EELLKVISEREKEISGLWNELDSLKVAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKV 1032

Query: 837  SVLIVVTEDLLDRFNAVDL-ARLSAKVL 863
            +     +++      AV+L A+   K L
Sbjct: 1033 N---KTSKERQQEVEAVELEAKEVLKKL 1057


>gi|225848330|ref|YP_002728493.1| acriflavin resistance protein AcrE [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643486|gb|ACN98536.1| acriflavin resistance protein AcrE [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 387

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 10/143 (6%)

Query: 722 RIEAITGQRA----RSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIH 774
           R EA+  ++A            E+ K+L       K     +  ++        ++    
Sbjct: 124 RDEALAARKAALENYEFAKRTYERFKNLYQENAVSKQQLEEIETKMVAAKSMVEQVDAKL 183

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           A+ K + +      +++  +   + I +  D   +K + D          I ++G   EK
Sbjct: 184 AQLKAKESQVKAKINQVDIMAGYAVIKAPFDGYVIKKMNDEGDMAAPGMPIFIIG---EK 240

Query: 835 KASVLIVVTEDLLDRFNAVDLAR 857
           K   +  + E LLD+    D  +
Sbjct: 241 KLQFVANLDESLLDKVKVGDTLK 263


>gi|188996511|ref|YP_001930762.1| translation initiation factor IF-2 [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931578|gb|ACD66208.1| translation initiation factor IF-2 [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 928

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            R  +   E RKL+        +  +   +  ++ ++N +    ++   + L+  ++ L 
Sbjct: 691 EREAKQLAEIRKLRREEELLAKKTRIHLENLSEVKEINIIIKADTQGSLEALRKSIEELS 750

Query: 818 KKIQSGII-----MLVGISKEKKASVLIVVTEDLLDRFN 851
            K     I      + GI++     +L   +  ++  FN
Sbjct: 751 NKFSEVSINIIHGAVGGITESD--VMLAAASNAIIIGFN 787


>gi|73998472|ref|XP_863855.1| PREDICTED: similar to Serine/threonine-protein kinase 10
           (Lymphocyte-oriented kinase) isoform 4 [Canis
           familiaris]
          Length = 946

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 613 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 669

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 670 QEQE---FVQKQQQELDG-ALKKIIQQQKAELAN 699


>gi|73998468|ref|XP_863816.1| PREDICTED: similar to Serine/threonine-protein kinase 10
           (Lymphocyte-oriented kinase) isoform 2 [Canis
           familiaris]
          Length = 957

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 624 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 680

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 681 QEQE---FVQKQQQELDG-ALKKIIQQQKAELAN 710


>gi|309389187|gb|ADO77067.1| chromosome segregation protein SMC [Halanaerobium praevalens DSM
           2228]
          Length = 1205

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           L  +   L+  A  L++S+ N+  +V+E+ +E    +    K + +LN    + H++ 
Sbjct: 880 LKEKQNDLEQAAEKLEISKKNLTKKVKELEKEVEIKEKQAKKLQDKLNQTKDTFHQLD 937


>gi|118381467|ref|XP_001023894.1| hypothetical protein TTHERM_00473110 [Tetrahymena thermophila]
 gi|89305661|gb|EAS03649.1| hypothetical protein TTHERM_00473110 [Tetrahymena thermophila
           SB210]
          Length = 253

 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 71/201 (35%), Gaps = 3/201 (1%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++F++T F+ + GGQ  D G    +G ++ +  +    E   + H + ++  ++    + 
Sbjct: 38  ILFEKTIFHPQGGGQPSDNGFIEVNGEQIPVKKLIYIREQELIFHQVEKKDCIKENQEVR 97

Query: 573 LTIDYQNRRQLSINHSATHLLH-HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           + ID   RRQ  + HS  HL+              +    I    + + V   +  +  +
Sbjct: 98  MQIDENFRRQNVLLHSGGHLIDVAVNRLGYEWEAGKGYHFIDGPYVEYTVNKWEEGSQEK 157

Query: 632 -LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
               I   +  I+ +  P    I    +   +         Y      +     +     
Sbjct: 158 LKDQINQELEKILTEGSPENPSICKIYEYDEAKKEISNFPTYLPEGINIRWVKLNKLDPG 217

Query: 691 SALCGGTHVSSTGEIMLLYIV 711
              CGGTHV +  +   + + 
Sbjct: 218 -CPCGGTHVKNVSDFKKVVVN 237


>gi|301770931|ref|XP_002920880.1| PREDICTED: ski-like protein-like isoform 2 [Ailuropoda melanoleuca]
          Length = 638

 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E ++  +A   L  + + L+     L+  Q     R+EE + E + L+    +   Q  
Sbjct: 513 VEMLSSSKAMKELTEEQQNLQK---ELESLQNEHAHRMEEFYIEQKDLEKKLEQVMKQKC 569

Query: 783 VEDLSCHKIADVNFMSHIIS--------EVDSKELKSVMDALQKK 819
             D +  K  +  + + +          E D +EL+   D L+++
Sbjct: 570 TCDSNLEKDKEAEYAAQLAELRQRLDHAEADRQELQ---DELRQE 611


>gi|294499871|ref|YP_003563571.1| AcrB/AcrD/AcrF family transporter [Bacillus megaterium QM B1551]
 gi|294349808|gb|ADE70137.1| transporter, AcrB/AcrD/AcrF family [Bacillus megaterium QM B1551]
          Length = 1012

 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 76/179 (42%), Gaps = 18/179 (10%)

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL----ASFLKVSQGN 755
           S+  ++       E+ +    +R++ +T     +    Q + +  +    A+   VS   
Sbjct: 659 SNLNDLQKAAKQVENHLNKD-KRLKYVTN----NFSDKQKQLVVEVDPDKAAEYGVSGFQ 713

Query: 756 VVGRVEEIWE--EYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI--ISEVDSKEL 809
           ++G + +  +      L+L + KR +QL+ +    S  +I D+   +    +   D  ++
Sbjct: 714 LLGTISDQTKPVSVGDLKLDNTKRAVQLSYDKDLSSVKEIKDLQVFTERGPVLVKDIADV 773

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           +++ D      +    +   +  + K   +  VT+D++D    +DL +  +  L GGGG
Sbjct: 774 RTI-DTFTSIQKLDGKVFARVEADIKGDDVQAVTKDVVDGVKKLDLPKDVS--LDGGGG 829


>gi|301770929|ref|XP_002920879.1| PREDICTED: ski-like protein-like isoform 1 [Ailuropoda melanoleuca]
 gi|281337888|gb|EFB13472.1| hypothetical protein PANDA_009694 [Ailuropoda melanoleuca]
          Length = 684

 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E ++  +A   L  + + L+     L+  Q     R+EE + E + L+    +   Q  
Sbjct: 559 VEMLSSSKAMKELTEEQQNLQK---ELESLQNEHAHRMEEFYIEQKDLEKKLEQVMKQKC 615

Query: 783 VEDLSCHKIADVNFMSHIIS--------EVDSKELKSVMDALQKK 819
             D +  K  +  + + +          E D +EL+   D L+++
Sbjct: 616 TCDSNLEKDKEAEYAAQLAELRQRLDHAEADRQELQ---DELRQE 657


>gi|126277734|ref|XP_001378059.1| PREDICTED: similar to testis expressed sequence 9 [Monodelphis
           domestica]
          Length = 498

 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR----KLQLNVE 784
            RA   +     +L  L    K        ++EE+  E +KL+    +     K Q+ + 
Sbjct: 407 NRALEDVEKYKLELSKLKQSNKDLANEEHKKIEELKAENKKLEKQKGELMSGFKKQMKLI 466

Query: 785 DLSCHK---IADVNFMSHIISEVDSKEL 809
           D+   +   I     +S    E   K L
Sbjct: 467 DILKRQKMHIEAAKMLSFSEEEF-MKAL 493


>gi|218199794|gb|EEC82221.1| hypothetical protein OsI_26369 [Oryza sativa Indica Group]
          Length = 256

 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            +  +    +L+S A  LK S  ++  +++E+  E  +L+    K K +    +    
Sbjct: 133 LNDAIRVMAELRSEAQKLKESNESLQEKIKELKAEKNELRDEKQKLKAEKESLEQQIK 190


>gi|78184510|ref|YP_376945.1| threonyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|123757112|sp|Q3AYC6|SYT_SYNS9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78168804|gb|ABB25901.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Synechococcus
           sp. CC9902]
          Length = 611

 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS +H++  A+  +  +     G   T  G  +D  + +P T  +LK+I+  +  II + 
Sbjct: 39  HSMSHVMAMAVQKLFPNAQVTIGPW-TETGFYYDFDNPEPFTEDDLKAIKKEMGKIIGRK 97

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVSSTG 703
           LP+    ++R++A            Y   +       +     G     LC G HV +T 
Sbjct: 98  LPLERIEVSRDEAETR--IKAQNEPYKLEILERLQEPITLYTLGDQWWDLCAGPHVENTK 155

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           E+         S+     R     G   ++ L                +   +      +
Sbjct: 156 ELHP-KAFELESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLAEHKRRK 202

Query: 760 VEEIWEEYRKLQLIHA 775
           VE +  ++R+L     
Sbjct: 203 VEALRRDHRRLGKDLE 218


>gi|10956337|ref|NP_052786.1| hypothetical protein pxo1_90 [Bacillus anthracis]
 gi|21392808|ref|NP_652888.1| S-layer protein [Bacillus anthracis str. A2012]
 gi|47566444|ref|YP_016455.2| s-layer protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|170689903|ref|ZP_02881073.1| S-layer protein [Bacillus anthracis str. A0465]
 gi|229599831|ref|YP_002860802.1| S-layer protein [Bacillus anthracis str. A0248]
 gi|254687811|ref|ZP_05151667.1| S-layer protein [Bacillus anthracis str. CNEVA-9066]
 gi|254756500|ref|ZP_05208529.1| S-layer protein [Bacillus anthracis str. Vollum]
 gi|4894306|gb|AAD32394.1| pXO1-90 [Bacillus anthracis]
 gi|20520195|gb|AAM26077.1| S-layer protein, (pXO1-90) [Bacillus anthracis str. A2012]
 gi|47552259|gb|AAT28865.2| S-layer protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|170666278|gb|EDT17071.1| S-layer protein [Bacillus anthracis str. A0465]
 gi|229269450|gb|ACQ51086.1| S-layer protein [Bacillus anthracis str. A0248]
          Length = 652

 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
                     D+K+K+    L   + +++ R+ E  E  +K   ++ K      V++   
Sbjct: 323 MELIKQQSEFDKKIKNEKDDLNKKREDLINRIAESKELAKKKAELNTKLVELFKVQEALN 382

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQK 818
            K     +  + +      EL+ + D  + 
Sbjct: 383 KKSGQYLYYINKLD----NELRELADKYKN 408


>gi|115472613|ref|NP_001059905.1| Os07g0543000 [Oryza sativa Japonica Group]
 gi|32352190|dbj|BAC78588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|34395240|dbj|BAC83769.1| putative bHLH protein [Oryza sativa Japonica Group]
 gi|109287753|dbj|BAE96297.1| bHLH-HALZ myc like protein [Oryza sativa Japonica Group]
 gi|113611441|dbj|BAF21819.1| Os07g0543000 [Oryza sativa Japonica Group]
 gi|194396121|gb|ACF60478.1| bHLH transcription factor [Oryza sativa Japonica Group]
 gi|215765132|dbj|BAG86829.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637220|gb|EEE67352.1| hypothetical protein OsJ_24621 [Oryza sativa Japonica Group]
          Length = 256

 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            +  +    +L+S A  LK S  ++  +++E+  E  +L+    K K +    +    
Sbjct: 133 LNDAIRVMAELRSEAQKLKESNESLQEKIKELKAEKNELRDEKQKLKAEKESLEQQIK 190


>gi|313243045|emb|CBY39750.1| unnamed protein product [Oikopleura dioica]
          Length = 1772

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 44/126 (34%), Gaps = 5/126 (3%)

Query: 700  SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
                ++           +    RIE    +  +     +DE +  +             +
Sbjct: 1340 KRVEQVESEMKQKSEESKEAAERIE-DARKMIQDLRREKDELVSMIGQRSSDQNLKFTQK 1398

Query: 760  VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM---SHIISEVDSKELKSVMDAL 816
            +E++ EE R LQ      + +  +E  +  + +++  +        E+  ++LK  +  L
Sbjct: 1399 IEKLREENRDLQKKLDDVRKESRLEAKTLSEASNIKQVLREKQHYQELS-EDLKVDIQKL 1457

Query: 817  QKKIQS 822
            + ++  
Sbjct: 1458 KNQMNE 1463


>gi|301068152|ref|YP_003786923.1| s-layer protein [Bacillus anthracis CI]
 gi|300379241|gb|ADK08144.1| s-layer protein [Bacillus cereus biovar anthracis str. CI]
          Length = 673

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
                     D+K+K+    L   + +++ R+ E  E  +K   ++ K      V++   
Sbjct: 323 MELIKQQSEFDKKIKNEKDDLNKKREDLINRIAESKELAKKKAELNTKLVELFKVQEALN 382

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQK 818
            K     +  + +      EL+ + D  + 
Sbjct: 383 KKSGQYLYYINKLD----NELRELADKYKN 408


>gi|206890811|ref|YP_002247978.1| MutS2 family protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742749|gb|ACI21806.1| MutS2 family protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 785

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 48/146 (32%), Gaps = 32/146 (21%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNV------VGRVEEIWEEYRK-LQLIH----AKR 777
           +RA      QD ++  L   L+ ++         + +++ I +  +  L+         +
Sbjct: 510 RRAYELKGTQDREIYELIKELEKNKQEYETKLAEIEKIKNIMDSEKNRLEKELVFASENK 569

Query: 778 KLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K  +    +           ++NF+     + D K+L+ +   +    +          +
Sbjct: 570 KKIIEQAKIEAQSMLTKLKKEINFLYEEAKKADRKKLREISQKISDISKK-----FISEE 624

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARL 858
            KK            +  N  D+ ++
Sbjct: 625 PKK-----------QEELNPGDIVKI 639


>gi|254304118|ref|ZP_04971476.1| possible ATP-binding protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324310|gb|EDK89560.1| possible ATP-binding protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 921

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           +    D  LK      K  + N+  ++  + E     + I    K + +VE        +
Sbjct: 165 YKEMYDSFLKEAVDKYKSEKENLDSKINSLKENMEDKEQITNSLKEEKDVEKNLQDNFKN 224

Query: 794 VNFMSHIISEVDSKE-------LKSVMDALQKK 819
           +N +S  +   + K+       L +++  ++ +
Sbjct: 225 INVVSKNLEN-EIKDYETTEVELNNLVKNIKDE 256


>gi|225871596|ref|YP_002752954.1| S-layer protein [Bacillus cereus 03BB102]
 gi|225785457|gb|ACO25675.1| S-layer protein [Bacillus cereus 03BB102]
          Length = 673

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
                     D+K+K+    L   + +++ R+ E  E  +K   ++ K      V++   
Sbjct: 323 MELIKQQSEFDKKIKNEKDDLNKKREDLINRIAESKELAKKKAELNTKLVELFKVQEALN 382

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQK 818
            K     +  + +      EL+ + D  + 
Sbjct: 383 KKSGQYLYYINKLD----NELRELADKYKN 408


>gi|120659880|gb|AAI30454.1| ANKRD26 protein [Homo sapiens]
          Length = 1726

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   +KL  + + L+ +Q      V   E++ +  +KL+  +AK K+ +  +     
Sbjct: 1270 DETQDLKKKLGQIRNQLQEAQDRHTEAVRCAEKMQDHKQKLEKDNAKLKVTVKKQMDKIE 1329

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++   N ++  +SE + ++LK +M  L++ ++
Sbjct: 1330 ELQK-NLLNANLSEDEKEQLKKLM-ELKQSLE 1359


>gi|119606479|gb|EAW86073.1| ankyrin repeat domain 26 [Homo sapiens]
          Length = 1709

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   +KL  + + L+ +Q      V   E++ +  +KL+  +AK K+ +  +     
Sbjct: 1253 DETQDLKKKLGQIRNQLQEAQDRHTEAVRCAEKMQDHKQKLEKDNAKLKVTVKKQMDKIE 1312

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++   N ++  +SE + ++LK +M  L++ ++
Sbjct: 1313 ELQK-NLLNANLSEDEKEQLKKLM-ELKQSLE 1342


>gi|40789039|dbj|BAA83026.2| KIAA1074 protein [Homo sapiens]
          Length = 1715

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   +KL  + + L+ +Q      V   E++ +  +KL+  +AK K+ +  +     
Sbjct: 1259 DETQDLKKKLGQIRNQLQEAQDRHTEAVRCAEKMQDHKQKLEKDNAKLKVTVKKQMDKIE 1318

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++   N ++  +SE + ++LK +M  L++ ++
Sbjct: 1319 ELQK-NLLNANLSEDEKEQLKKLM-ELKQSLE 1348


>gi|150021783|ref|YP_001307137.1| MutS2 family protein [Thermosipho melanesiensis BI429]
 gi|149794304|gb|ABR31752.1| MutS2 family protein [Thermosipho melanesiensis BI429]
          Length = 760

 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +RA+ ++     K++++   L +    +  +   + E  R+ + +  + + + N+     
Sbjct: 489 ERAKEYISKDKMKVENIIRNLNMKVSELEEKKRALEETLREYEKLKQEYERKYNILK--- 545

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
                       I E+D KEL+ +    +   +     L   
Sbjct: 546 ---------VKKIEELD-KELRDLYKEFRDAKRELQTALFSA 577


>gi|115712094|ref|XP_784795.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115950309|ref|XP_001185350.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1279

 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 43/116 (37%), Gaps = 14/116 (12%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--------------RKLQLIHAKRK 778
           + L    ++L+ L    K S+     +V  + +E               ++L+      K
Sbjct: 728 AELAEARKQLEELKDEFKSSKEESEMKVTTLQKENDSISSELATVRINCKELKDEFKSSK 787

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            +  ++  +  K  D          ++ KEL+  ++ L+++ ++ +   +     K
Sbjct: 788 EESEMKVTTLQKKNDSISSELATVRINCKELQETLEELKEENKNMVQATISAQGGK 843



 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 40/182 (21%)

Query: 731  ARSHLMGQDEKLKSLASFLKVSQGN-------VVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
            A       ++  + L    K SQ            +VE+  E+  +LQ I    + +L+ 
Sbjct: 1101 AMKLKEENEDLSRQLTQAQKQSQKESNLSPAVTPDKVEKPDEQTEELQNIKKDLEQKLSK 1160

Query: 784  EDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             +    K +     ++  + +++ K +K  +D    K++S I          + ++ + V
Sbjct: 1161 AENESSKLVMKNQVITKRVKDLE-KLVKETVDQNI-KLESEI-----KKSTSRPALALGV 1213

Query: 843  TEDLLDRFNAVDLARL---------SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            TE L  + +  +L +            +             A        K + AI  V 
Sbjct: 1214 TEKLKQKVD--ELQKERKELEEKLQINEQES-------KDFA-------EKTETAIEKVK 1257

Query: 894  SF 895
              
Sbjct: 1258 EM 1259


>gi|14591014|ref|NP_143089.1| hypothetical protein PH1189 [Pyrococcus horikoshii OT3]
 gi|3257606|dbj|BAA30289.1| 270aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 270

 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 69/163 (42%), Gaps = 14/163 (8%)

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTH--VSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
           Y + + ++    +D  + ++ L  G    +   GE   +  +  S        I +I+ +
Sbjct: 37  YINNLPIMIDRDKDTNITAAILHIGDRLIIIKEGEKKEINSIEISVSSFNNYAILSISSE 96

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN--VEDLS 787
           +        +E  + L   LK     +  +++ + +E  +L+  +A+ K +++   + L 
Sbjct: 97  KPFEVKFSNEETSQKL-ETLKEENEKLKEQIQNLTKENEQLKNENAQLKRRISDLEKHLK 155

Query: 788 CHKIADVNFMSHIISEV--DSKELKS-------VMDALQKKIQ 821
             K  D++ +   I+ +  +++ELK         ++ L+ K +
Sbjct: 156 EAKAQDISELQVQINNLTRENRELKEKIANQTNTINQLKAKAK 198


>gi|295982762|gb|ADG63228.1| myosin XIa [Physcomitrella patens]
          Length = 1536

 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 20/136 (14%)

Query: 729  QRARSHLMGQDEK----LKSLASFLK-VSQGNVVG-RVEEIWEEYRKLQLIHAKRKLQLN 782
            Q A++HL  + E     L   A  +K V    V   +VE++ +E  +LQ + A  K +  
Sbjct: 938  QEAKTHLTKELEVNKLALGQAAQVIKEVPPVEVFDAKVEKLTKENEELQALLADLKKKAA 997

Query: 783  VEDLS-CHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKEKKA--- 836
              +        + +       + ++K  E +  + +LQ+K+ +       +  E +    
Sbjct: 998  EAEEQFAQAKKESDERLKRAEQAEAKITETQEALQSLQEKLSN-------MESENQVLRQ 1050

Query: 837  -SVLIVVTEDLLDRFN 851
             ++++  T+ L +RF 
Sbjct: 1051 QTLVLSPTKGLSNRFK 1066


>gi|168036921|ref|XP_001770954.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677818|gb|EDQ64284.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1470

 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 20/136 (14%)

Query: 729  QRARSHLMGQDEK----LKSLASFLK-VSQGNVVG-RVEEIWEEYRKLQLIHAKRKLQLN 782
            Q A++HL  + E     L   A  +K V    V   +VE++ +E  +LQ + A  K +  
Sbjct: 872  QEAKTHLTKELEVNKLALGQAAQVIKEVPPVEVFDAKVEKLTKENEELQALLADLKKKAA 931

Query: 783  VEDLS-CHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKEKKA--- 836
              +        + +       + ++K  E +  + +LQ+K+ +       +  E +    
Sbjct: 932  EAEEQFAQAKKESDERLKRAEQAEAKITETQEALQSLQEKLSN-------MESENQVLRQ 984

Query: 837  -SVLIVVTEDLLDRFN 851
             ++++  T+ L +RF 
Sbjct: 985  QTLVLSPTKGLSNRFK 1000


>gi|154354990|ref|NP_055730.2| ankyrin repeat domain-containing protein 26 [Homo sapiens]
 gi|11990779|emb|CAC19649.1| novel protein [Homo sapiens]
          Length = 1710

 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   +KL  + + L+ +Q      V   E++ +  +KL+  +AK K+ +  +     
Sbjct: 1254 DETQDLKKKLGQIRNQLQEAQDRHTEAVRCAEKMQDHKQKLEKDNAKLKVTVKKQMDKIE 1313

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++   N ++  +SE + ++LK +M  L++ ++
Sbjct: 1314 ELQK-NLLNANLSEDEKEQLKKLM-ELKQSLE 1343


>gi|194382026|dbj|BAG64382.1| unnamed protein product [Homo sapiens]
          Length = 404

 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 75/235 (31%), Gaps = 10/235 (4%)

Query: 594 HHALSTILGSHVSQ---NGSCITPDGLRFDVTHSKPITSAELKSIEDNVN--DIIAQNLP 648
           H   S ++ + V +    G  +T           +      +  +             + 
Sbjct: 17  HCHFSQVIFNSVEKFYIPGGDVTCHYTFTQHFIPRRKDWIGIFRVGWKTTREYYTFMWVT 76

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +   + N+                +          EDG V  +++       +  +I+++
Sbjct: 77  LPIDLNNKSAKQQEVQFKAYYLPKDYEYYQFCYVDEDGVVRGASIPFQFRPENEEDILVV 136

Query: 709 YIVSE-SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
               E  ++++  +++E    ++ + +   +  +LK     +      +  RV+++  + 
Sbjct: 137 TTQEELETLQSINKKLELKVKEQ-KDYWETELLQLKEQNQKMSSENEKMGIRVDQLQAQL 195

Query: 768 RKLQLIHAKR---KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
              +    K          +     K  D  F+S      D K+L+  ++ +++ 
Sbjct: 196 STQEKEMEKLVQGDQDKTEQLEQLKKENDHLFLSLTEQRKDQKKLEQTVEQMKQN 250


>gi|109940217|sp|Q9UPS8|ANR26_HUMAN RecName: Full=Ankyrin repeat domain-containing protein 26
          Length = 1709

 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   +KL  + + L+ +Q      V   E++ +  +KL+  +AK K+ +  +     
Sbjct: 1253 DETQDLKKKLGQIRNQLQEAQDRHTEAVRCAEKMQDHKQKLEKDNAKLKVTVKKQMDKIE 1312

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++   N ++  +SE + ++LK +M  L++ ++
Sbjct: 1313 ELQK-NLLNANLSEDEKEQLKKLM-ELKQSLE 1342


>gi|168269664|dbj|BAG09959.1| ankyrin repeat domain-containing protein 26 [synthetic construct]
          Length = 1709

 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   +KL  + + L+ +Q      V   E++ +  +KL+  +AK K+ +  +     
Sbjct: 1253 DETQDLKKKLGQIRNQLQEAQDRHTEAVRCAEKMQDHKQKLEKDNAKLKVTVKKQMDKIE 1312

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++   N ++  +SE + ++LK +M  L++ ++
Sbjct: 1313 ELQK-NLLNANLSEDEKEQLKKLM-ELKQSLE 1342


>gi|116196518|ref|XP_001224071.1| hypothetical protein CHGG_04857 [Chaetomium globosum CBS 148.51]
 gi|88180770|gb|EAQ88238.1| hypothetical protein CHGG_04857 [Chaetomium globosum CBS 148.51]
          Length = 501

 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVV-GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
              +   DE+L+   +    ++  V    VEEI  + + L+      K++L  E  +  +
Sbjct: 99  LDQIKSLDEQLRRRITEQNAARSKVAFKSVEEIDAKIKDLERDVESGKMKLVEEKKALAE 158

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++ +  +    S  D+   +  +D L++KI+ 
Sbjct: 159 VSSLRKLRKNFSVFDND--QKAIDDLKQKIKE 188


>gi|329768136|ref|ZP_08259643.1| hypothetical protein HMPREF0428_01340 [Gemella haemolysans M341]
 gi|328838194|gb|EGF87810.1| hypothetical protein HMPREF0428_01340 [Gemella haemolysans M341]
          Length = 759

 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 41/187 (21%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD-----------EKLKSLASFLKV 751
            ++  L   SE+ I   +  +EA     AR  +  +            +    +   LK 
Sbjct: 219 ADVKKLQADSEAEIEKTVPLVEAK--PNARKAIDEEAKAKKAAIDARTDISDKVKELLKA 276

Query: 752 SQGNVVGRVEEIWE---EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS-- 806
               +V + ++  +      +L  I   +K ++         + +V   +  +   D   
Sbjct: 277 EVDEIVTQAKKAIDAASSVNELNKIEEAKKSEIKA-------VEEVRVPAEKVIVADPTK 329

Query: 807 ----------KELKSVMDALQK--KIQSGIIMLVGISKEKKASVLIVVTE---DLLDRFN 851
                       ++SV    ++  + + G +++V  +  K+   +  VT+   DL+   N
Sbjct: 330 LTNEEKAKVLAAIRSVNPDAKEITQDEKGNVIVVTANGHKQVISVAQVTKTEADLVKE-N 388

Query: 852 AVDLARL 858
           A ++   
Sbjct: 389 AGNVVNT 395


>gi|296328718|ref|ZP_06871233.1| DNA repair protein RecN [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154155|gb|EFG94958.1| DNA repair protein RecN [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 558

 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-EIWEEYRKLQLIHAKRKLQLNV-EDL 786
           +  +  L    ++   +A  L  S+  +  ++E E+  E + L +  AK K+Q+N  E +
Sbjct: 349 KELKKELNKIKDEYDKIAEKLTNSRKEIAVKIENELLNELKFLNMEDAKLKVQINKLEKM 408

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVM 813
           +     DV F        D K L  + 
Sbjct: 409 TSEGYDDVEFFISTNVGQDLKPLNKIA 435


>gi|156083234|ref|XP_001609101.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia bovis
           T2Bo]
 gi|154796351|gb|EDO05533.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia
           bovis]
          Length = 1359

 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 90/318 (28%), Gaps = 57/318 (17%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
                +A   +           V+Q    +         +      + E        N  
Sbjct: 509 YQQGRNAPITVDEYNLFAHFQAVTQYCPLVLIGIQGGLHSTKGTDKTTEPPIHSLYANTE 568

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
                P V   +   + +     AL    Y   +R         G        G  V S 
Sbjct: 569 CHFTYPEVK--IQAYNQVVHYIRALFYQLY--FLRKQCAVKVALGGKWRECRYGNGVVSK 624

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  + +          +R+      + +  L+G  E    LA  LK     ++ ++ E
Sbjct: 625 GVISWMCLGCNPMEHDRKKRV-----DKVKEGLVGVKES-DKLAGGLKT----LLEKIGE 674

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +  +    Q    K    +N+   +  K++ VN            +LK V++ +      
Sbjct: 675 VVVQLGNAQEELEKSGGNVNIALAAVKKVSGVNG----------SDLKGVLEKVLD---- 720

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR---LSAKVLGGGGGGGRPHMAQSGG 879
             ++L  + K     ++  V E    +  A++  +    +AK                  
Sbjct: 721 --VVLGVVEK-----LVEGVKE----KVKALEEIKKTLEAAKEKL--------------- 754

Query: 880 PNGNKADQAIAGVASFLK 897
               K  +A+      L+
Sbjct: 755 EEAKKTQEALEAAKGELE 772


>gi|291570087|dbj|BAI92359.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 242

 Score = 41.7 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 732 RSHLMGQDEKLKSLASFLK-------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                  ++ LK   S L+        S   +   + ++ +E  +   + A+ K +    
Sbjct: 107 LQQSQETEQTLKKEISALQLTVKNAQASHRQLATTINKLQQELEEKNKLIAQLKQETEAA 166

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                K+      +  +SE ++K L+ + + L+
Sbjct: 167 AALKEKLEQAELTALHLSETNTKLLQHI-EQLK 198


>gi|284050245|ref|ZP_06380455.1| hypothetical protein AplaP_02090 [Arthrospira platensis str.
           Paraca]
          Length = 205

 Score = 41.7 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 732 RSHLMGQDEKLKSLASFLK-------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                  ++ LK   S L+        S   +   + ++ +E  +   + A+ K +    
Sbjct: 70  LQQSQETEQTLKKEISALQLTVKNAQASHRQLATTINKLQQELEEKNKLIAQLKQETEAA 129

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                K+      +  +SE ++K L+ + + L+
Sbjct: 130 AALKEKLEQAELTALHLSETNTKLLQHI-EQLK 161


>gi|115496958|ref|NP_001069520.1| homer protein homolog 1 [Bos taurus]
 gi|122144897|sp|Q2KJ56|HOME1_BOVIN RecName: Full=Homer protein homolog 1; Short=Homer-1
 gi|86823919|gb|AAI05510.1| Homer homolog 1 (Drosophila) [Bos taurus]
 gi|296483652|gb|DAA25767.1| homer protein homolog 1 [Bos taurus]
          Length = 354

 Score = 41.7 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 76/226 (33%), Gaps = 27/226 (11%)

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
           +        +     +++N    +  P +T+           A     +     +    +
Sbjct: 128 SQESAGGDLQSPLTPESINGTDDERTPDLTQNSEPRPEPTQNALPFTHSSAISKHWEAEL 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLM 736
            +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     +H  
Sbjct: 188 ATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHTHKT 247

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-- 794
             ++ ++ L   LKV +  +  R+++  +  R+LQ        +L   ++    +     
Sbjct: 248 ELNQTIQELEETLKVKEEEI-ERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLEGQLS 306

Query: 795 -----------------NFMSHIISEVDSK--ELKSVMDALQKKIQ 821
                            N +  ++  +D K  EL  + D L K ++
Sbjct: 307 DLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLAKLLE 352


>gi|255714384|ref|XP_002553474.1| KLTH0D17688p [Lachancea thermotolerans]
 gi|238934854|emb|CAR23036.1| KLTH0D17688p [Lachancea thermotolerans]
          Length = 680

 Score = 41.7 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 18/121 (14%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V    +   +     S + + IRR+E             +   LK   S L   + N+  
Sbjct: 557 VVKPSQNSQMNAQMVSRLGSQIRRLE------------TELASLKDSNSRLLKEKQNIND 604

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM----SHIISEV--DSKELKSV 812
            + ++ EE        ++ K  L   D    K+     +    S  + E+  D  +LK +
Sbjct: 605 TIVKLMEENSNANKTKSQLKESLAHSDALEKKLNATLQLLGERSERVEELENDVDDLKEL 664

Query: 813 M 813
           M
Sbjct: 665 M 665


>gi|73998466|ref|XP_544006.2| PREDICTED: similar to serine/threonine kinase 2 isoform 1 [Canis
           familiaris]
          Length = 1242

 Score = 41.7 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 909 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 965

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 966 QEQE---FVQKQQQELDG-ALKKIIQQQKAELAN 995


>gi|328874190|gb|EGG22556.1| structural maintenance of chromosome protein [Dictyostelium
            fasciculatum]
          Length = 1442

 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            + A        + + +L   +KVS      RV++I E  +  +  + K K ++   D   
Sbjct: 939  KAAHKKQEELSKAIPALEHQIKVSSQK-QERVDQIKETLKTDKKEYDKLKEKV---DSLE 994

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              I  +      +     K  K+++D LQ+KI 
Sbjct: 995  KSIQSIRNKILNVGGSALKNQKTLVDELQQKID 1027


>gi|321312572|ref|YP_004204859.1| hypothetical protein BSn5_06020 [Bacillus subtilis BSn5]
 gi|320018846|gb|ADV93832.1| hypothetical protein BSn5_06020 [Bacillus subtilis BSn5]
          Length = 248

 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  + + + S A  LK ++ +   ++E++  E   L+      K ++     +  ++ 
Sbjct: 86  EELEKEYKSVSSEAKKLKDNKED-QDKLEKLKNENSDLKKTQKSLKAEIKELQENQKQLK 144

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +        ++ +++ L+     L+ +++  
Sbjct: 145 E----DAKTAKAENETLRQDKTKLENQLKET 171


>gi|221310975|ref|ZP_03592822.1| hypothetical protein Bsubs1_16531 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315302|ref|ZP_03597107.1| hypothetical protein BsubsN3_16437 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320219|ref|ZP_03601513.1| hypothetical protein BsubsJ_16358 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324501|ref|ZP_03605795.1| hypothetical protein BsubsS_16507 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767697|ref|NP_390914.2| hypothetical protein BSU30360 [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|226731831|sp|Q795Q5|YTTA_BACSU RecName: Full=Uncharacterized membrane protein yttA
 gi|2293303|gb|AAC00381.1| YttA [Bacillus subtilis]
 gi|225185325|emb|CAB15014.2| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 248

 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  + + + S A  LK ++ +   ++E++  E   L+      K ++     +  ++ 
Sbjct: 86  EELEKEYKSVSSEAKKLKDNKED-QDKLEKLKNENSDLKKTQKSLKAEIKELQENQKQLK 144

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +        ++ +++ L+     L+ +++  
Sbjct: 145 E----DAKTAKAENETLRQDKTKLENQLKET 171


>gi|308814314|ref|XP_003084462.1| C-4 sterol methyl oxidase (ISS) [Ostreococcus tauri]
 gi|116056347|emb|CAL56730.1| C-4 sterol methyl oxidase (ISS) [Ostreococcus tauri]
          Length = 675

 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 40/366 (10%), Positives = 104/366 (28%), Gaps = 27/366 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            G  V+    G   +++                              +   K    +V  
Sbjct: 130 GGSNVDATFIGSIYDILRGFAVATVWQSVLEY---YWHRAMHARWFYERAHKIHHFYVSP 186

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  +    +                H A+ +L+ A+  + G  +  +G  ++    
Sbjct: 187 CCWCDLCIHPMEAFGYYCILYAPGFFFPLHRASFILYMAVMGVCGV-MDHSGVDVSFADG 245

Query: 618 RFDVTHSKPITSAELKSI-------EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            +D T           +        +      +        R+M+  D            
Sbjct: 246 AYDTTFHDAHHRLFFVNYAFPFDIIDRLCGTYVHGRTDPQARVMDMVDKADREYRVE-KR 304

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ- 729
           ++ +  R +    +D               +  E           + A  RR+  + G+ 
Sbjct: 305 RFEETERDLRQRVKDARDELEREREMRESGNERESNDAR-----ELGALRRRVGELEGEC 359

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGN----VVGRVEEIWEEYRKLQLIHAK--RKLQLNV 783
            A      +  K  +L +  K  +       + RV+++      L        +  +  V
Sbjct: 360 DALKESNQKHRK-DALMAKTKGERAEWLEGEIERVKKLLASSEGLVKQLKSDLQLEKSAV 418

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
             +   KI+     S +  E++    K +   L++++++    L  ++KE + +  +  +
Sbjct: 419 TKVESAKISLEKDRSSLRKEIEMNAAKML--ELEQEVENQSARLASMAKELEENRALGKS 476

Query: 844 EDLLDR 849
           +  + +
Sbjct: 477 DAAVAK 482


>gi|113205840|ref|NP_001037959.1| BRCA1-A complex subunit Abraxas [Xenopus (Silurana) tropicalis]
 gi|123893315|sp|Q28HX0|F175A_XENTR RecName: Full=BRCA1-A complex subunit Abraxas; AltName:
           Full=Coiled-coil domain-containing protein 98; AltName:
           Full=Protein FAM175A
 gi|89272000|emb|CAJ83656.1| novel protein [Xenopus (Silurana) tropicalis]
 gi|169642593|gb|AAI60397.1| family with sequence similarity 175, member A [Xenopus (Silurana)
           tropicalis]
          Length = 408

 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRKLQLIHAKRK 778
           R+E      A + +        +L   LK +   +V     VE++ E   +L+   A++K
Sbjct: 201 RLEFFNEDGALAEVNRISNMYTTLQDELKKTCSQLVESEHSVEQLLEAINELKKQIAEKK 260

Query: 779 LQLNVEDLSCHKIADVNFM 797
                      +  + N +
Sbjct: 261 KLNEETGNKVSEAPEENVL 279


>gi|89268981|emb|CAJ82841.1| novel protein [Xenopus (Silurana) tropicalis]
          Length = 359

 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRKLQLIHAKRK 778
           R+E      A + +        +L   LK +   +V     VE++ E   +L+   A++K
Sbjct: 152 RLEFFNEDGALAEVNRISNMYTTLQDELKKTCSQLVESEHSVEQLLEAINELKKQIAEKK 211

Query: 779 LQLNVEDLSCHKIADVNFM 797
                      +  + N +
Sbjct: 212 KLNEETGNKVSEAPEENVL 230


>gi|291540791|emb|CBL13902.1| Predicted permease [Roseburia intestinalis XB6B4]
          Length = 1034

 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 54/171 (31%), Gaps = 29/171 (16%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-KLQLNVEDLS 787
           + A+S +   +++L      L+ +   +  +  E+ E  + +Q    +  + ++ +    
Sbjct: 282 EDAKSQIEDGEKQLADAKKKLEYAPDELEKKEAELTEAEKAIQEKETQLDQAEVALGIGY 341

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
              +  +            K L  + + L  +            +   A+      + L 
Sbjct: 342 AQGVGQIQ-----------KALNGISEGLFSENG---------DQGNGAAGSFSSGDALA 381

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           D   A      +   +      GR  +A++          AIA     L++
Sbjct: 382 D---AGSQIADAKAQIAD----GRAQIAEAQ-KQIESGKSAIAKAKKQLEE 424


>gi|238618875|ref|YP_002913700.1| hypothetical protein M164_0402 [Sulfolobus islandicus M.16.4]
 gi|238379944|gb|ACR41032.1| conserved hypothetical protein [Sulfolobus islandicus M.16.4]
          Length = 153

 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                  +EKLK +      +   +  +++E+ +E  K ++   K KL+     +   ++
Sbjct: 87  LKDFDECNEKLKEVEEKCNKNPDELEKKLDELQKELDKKEVEV-KEKLKTLDNLIKIMEV 145

Query: 792 A 792
            
Sbjct: 146 N 146


>gi|240144319|ref|ZP_04742920.1| ABC transporter, permease protein [Roseburia intestinalis L1-82]
 gi|257203662|gb|EEV01947.1| ABC transporter, permease protein [Roseburia intestinalis L1-82]
          Length = 1034

 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 54/171 (31%), Gaps = 29/171 (16%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-KLQLNVEDLS 787
           + A+S +   +++L      L+ +   +  +  E+ E  + +Q    +  + ++ +    
Sbjct: 282 EDAKSQIEDGEKQLADAKKKLEYAPDELEKKEAELTEAEKAIQEKETQLDQAEVALGIGY 341

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
              +  +            K L  + + L  +            +   A+      + L 
Sbjct: 342 AQGVGQIQ-----------KALNGISEGLFSENG---------DQGNGAAGSFSSGDALA 381

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           D   A      +   +      GR  +A++          AIA     L++
Sbjct: 382 D---AGSQIADAKAQIAD----GRAQIAEAQ-KQIESGKSAIAKAKKQLEE 424


>gi|157818385|ref|NP_001100207.1| ninein [Rattus norvegicus]
 gi|149051367|gb|EDM03540.1| ninein (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 2031

 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 59/140 (42%), Gaps = 13/140 (9%)

Query: 696  GTHVSS---TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            GTH+       E+ L     +   R    R+  +  Q+       ++E+LK++   L+++
Sbjct: 1437 GTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEEEELKAVMHDLQIT 1496

Query: 753  QGNVVGRV-------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEV 804
             G +  +V       E++ EE   L+        + ++ +L   ++      +   I  +
Sbjct: 1497 CGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETI 1556

Query: 805  DSK--ELKSVMDALQKKIQS 822
            + +   ++ +++ L+K++  
Sbjct: 1557 EQEKASIQKMVEKLKKQVSD 1576


>gi|13472493|ref|NP_104060.1| hypothetical protein mll2809 [Mesorhizobium loti MAFF303099]
 gi|14023239|dbj|BAB49846.1| mll2809 [Mesorhizobium loti MAFF303099]
          Length = 362

 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 74/214 (34%), Gaps = 54/214 (25%)

Query: 723 IEAITGQRARSHLM----GQDEKLKSLA---SFLKVSQGNVVGRVEEIWEEYRKLQL--- 772
           +E   G  A   L      ++  L  L+     L+  +  +    E + +  RKL+    
Sbjct: 62  VEISRGHEALKGLAIERTDKNHALAELSAKNEALRQREEELHRLSERLKDTERKLEKRAL 121

Query: 773 IHAKR--------------KLQLNVEDLSCHK-IADVNFMSHIISEVD------SKELKS 811
              K               +++L   +    K  +D+  +     E D      + E K+
Sbjct: 122 ELEKLEQMYDDASFSSSSRQIELVARESELQKLASDIALLRGQRKEADRRQQEIAAESKA 181

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG---G 868
             DAL+ + +           +KK   L+    D  D+ +  +  +  A++        G
Sbjct: 182 ARDALKAEKKRVA------ELDKKVERLLATLADREDKLDRRE--KELARLREKAKAEDG 233

Query: 869 G------GRPHMAQSGGPNGNK----ADQAIAGV 892
           G      G+P  A  GG +  K     DQAIA +
Sbjct: 234 GPALRLVGKPDAA--GGHDEAKQRDDLDQAIAKL 265


>gi|224065288|ref|XP_002301757.1| predicted protein [Populus trichocarpa]
 gi|222843483|gb|EEE81030.1| predicted protein [Populus trichocarpa]
          Length = 193

 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-EDLSCHKIADVN 795
            + +K K +    +  +  +   + +   E RK++    KRK +  +       KI +  
Sbjct: 105 EERQKEKEIKKAYRERKNELKEEIRKNKVEKRKMREEREKRKQENILRSGTKLQKITNPK 164

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQS 822
            +  I    D K LK V D L    + 
Sbjct: 165 TLKKIAKSKDRKLLKVVPDELVNNNKK 191


>gi|224130876|ref|XP_002328398.1| predicted protein [Populus trichocarpa]
 gi|222838113|gb|EEE76478.1| predicted protein [Populus trichocarpa]
          Length = 708

 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQLIHAKRKLQLNVE 784
           +R    L  ++++       +++ +  +V ++E    ++ E+ ++++L + K K  L+  
Sbjct: 221 KRLIEELELKEKQFDERCEEVELERKKLVEKLELKEKQLVEQQKEVELENEKIKKFLDEL 280

Query: 785 DLSCHKIADVNF-MSHIISEVDSKELKSVMDALQK 818
           +L   ++ +    +      ++ KE K +++  + 
Sbjct: 281 ELKEKQVEERRLRVLEQAKGLELKE-KQLLERFKD 314


>gi|41281771|ref|NP_687036.1| homer protein homolog 1 isoform d [Mus musculus]
 gi|22312291|gb|AAM95461.1| homer 1d [Mus musculus]
 gi|148668621|gb|EDL00940.1| homer homolog 1 (Drosophila), isoform CRA_d [Mus musculus]
          Length = 370

 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 61/177 (34%), Gaps = 6/177 (3%)

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
           +        +     +++N    +  P VT+           A     +     +    +
Sbjct: 144 SQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPTQNALPFPHSSAISKHWEAEL 203

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLM 736
            +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     SH  
Sbjct: 204 ATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHSHKT 263

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             ++ ++ L   LKV +  +  R+++  +  R+LQ        +L   ++    +  
Sbjct: 264 ELNQTVQELEETLKVKEEEI-ERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLEG 319


>gi|330940437|ref|XP_003305947.1| hypothetical protein PTT_18935 [Pyrenophora teres f. teres 0-1]
 gi|311316802|gb|EFQ85957.1| hypothetical protein PTT_18935 [Pyrenophora teres f. teres 0-1]
          Length = 1027

 Score = 41.7 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 26/179 (14%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + A+  L  ++ +L++    +  +  +   ++ E+    ++ Q      K +L       
Sbjct: 774 KEAKDSLSSKESELEAAKGDVTKATESSSSKIAELEASLKEAQESLTVHKSELEAAKSEA 833

Query: 789 HKI-----ADVNFMSHIISEVDSKELKSVMDALQKKIQ-----SGIIMLVGISKEKKASV 838
            K       D   +   ISE+++  LK   D L  K          I     S   K + 
Sbjct: 834 EKAVESSKGDAEGLRSTISELEA-SLKEAKDGLAAKESELEAAKADISQATESSGSKIAE 892

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L    +   D   A +        L           A++G     + +QA+A   S L+
Sbjct: 893 LEASLKAAQDSLAAKE------SELEAKS-------AEAG--KVTELEQALATAKSDLE 936



 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLN 782
            A+       E +  L + L+ ++G V         +V E+    ++ Q   A ++ +L 
Sbjct: 644 AAKKEAEELRETVAKLEAELEAAKGEVTKISEASTAKVTELEGSLKEAQDSLAAKESELA 703

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                  K ++ +  +  ++E++   LK   ++L  K
Sbjct: 704 AAKEEVSKASEAS--ATKVAELEG-SLKEAQESLAAK 737


>gi|297619728|ref|YP_003707833.1| phosphoesterase RecJ domain protein [Methanococcus voltae A3]
 gi|297378705|gb|ADI36860.1| phosphoesterase RecJ domain protein [Methanococcus voltae A3]
          Length = 359

 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 22/142 (15%)

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIM 826
           L     K K   +++  S  +I +++ +   IS   S E    K+ +      I + + +
Sbjct: 217 LSQESEKGKRIAHLKACSRMQIEEMDGLIITISNASSYEASCAKTAV-----SIGADLAL 271

Query: 827 LVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN-- 883
           +  + K +K+  +     + +  + +  +L    A  + G GGG     A++ G N N  
Sbjct: 272 VAAVRKRDKQIRISSRCRKSVSKKLHMGELMEEVASKINGQGGG----HAEAAGLNANWD 327

Query: 884 ---KADQAIAGVASF----LKK 898
                D+A++ +       +K+
Sbjct: 328 KSTSKDEAVSKIIKICLATIKE 349


>gi|47568869|ref|ZP_00239562.1| S-layer homology domain protein [Bacillus cereus G9241]
 gi|47554448|gb|EAL12806.1| S-layer homology domain protein [Bacillus cereus G9241]
          Length = 692

 Score = 41.3 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
                     D+K+K+    L   + +++ R+ E  E  +K   ++ K      V++   
Sbjct: 342 MELIKQQSEFDKKIKNEKDDLNKKREDLINRIAESKELAKKKAELNTKLVELFKVQEALN 401

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQK 818
            K     +  + +      EL+ + D  + 
Sbjct: 402 KKSGQYLYYINKLD----NELRELADKYKN 427


>gi|296221154|ref|XP_002756624.1| PREDICTED: STE20-like serine/threonine-protein kinase isoform 1
           [Callithrix jacchus]
          Length = 1237

 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 904 DEAKRIKGEQEKELSKFQNILKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 960

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 961 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 990


>gi|301757430|ref|XP_002914565.1| PREDICTED: myosin-9-like [Ailuropoda melanoleuca]
 gi|281351115|gb|EFB26699.1| hypothetical protein PANDA_002468 [Ailuropoda melanoleuca]
          Length = 1961

 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 67/180 (37%), Gaps = 20/180 (11%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E    Q+  A   +   + ++  L   L   + S+  
Sbjct: 1070 QIAELKMQLAKKEEELQAALARVEEEASQKNMALKKIRELESQISELQEDLESERASRNK 1129

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +VN +   + + ++K  ++ + 
Sbjct: 1130 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLED-EAKTHEAQIQ 1188

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGGG 868
             +++K    +  L    ++ K        +  L++          +LA    KVL  G G
Sbjct: 1189 EMRQKHSQAVEELAEQLEQTKRV------KANLEKAKQTLENERGELANEV-KVLLQGKG 1241


>gi|169617864|ref|XP_001802346.1| hypothetical protein SNOG_12112 [Phaeosphaeria nodorum SN15]
 gi|160703502|gb|EAT80524.2| hypothetical protein SNOG_12112 [Phaeosphaeria nodorum SN15]
          Length = 1552

 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 14/110 (12%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH--- 789
             ++     ++K L+S  K S  +  GRV  + +    ++   AK + +    +       
Sbjct: 1006 RNIADSQRRIKELSSE-KASVKSDKGRVSTLEKTIATMEKEVAKLRSETADVEAEIKALQ 1064

Query: 790  ----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
                +I  V   S          LK  +D L ++  +  I     SKE+K
Sbjct: 1065 DKIMEIGGVKLRSQKAK---VDGLKQQIDTLTEQSSNAEI---SKSKEEK 1108


>gi|167645362|ref|YP_001683025.1| alanyl-tRNA synthetase [Caulobacter sp. K31]
 gi|167347792|gb|ABZ70527.1| alanyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 36

 Score = 41.3 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +GG G GG+   A+ G P+  KA   +  V + L
Sbjct: 1   MGGQGAGGKADFARGGAPDATKAQAGLGAVKAAL 34


>gi|118354788|ref|XP_001010655.1| hypothetical protein TTHERM_00112600 [Tetrahymena thermophila]
 gi|89292422|gb|EAR90410.1| hypothetical protein TTHERM_00112600 [Tetrahymena thermophila SB210]
          Length = 2918

 Score = 41.3 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 54/114 (47%), Gaps = 17/114 (14%)

Query: 731  ARSHLMGQDEKLKSLASFLKV----------SQGNVVGRVEEIWEEYRKLQL---IHAKR 777
              + L  Q+++ K L++ L++          ++ +++ +V+++ ++ + +     +    
Sbjct: 2563 VHNALKEQEKQNKKLSTELEILTFEKLKIEKNRDDLLKKVKQLEDQIKYIDKYDGLGEDF 2622

Query: 778  KLQLNVEDLSCHKIADV-NFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827
            +  LN  D    K+ D    M   ++ +   + K+LKS+ D ++ ++    IML
Sbjct: 2623 QAMLNERDEKIQKLQDKEKIMQKTVNTLNLSNKKQLKSLEDKIKNELNIKSIML 2676


>gi|227830929|ref|YP_002832709.1| hypothetical protein LS215_2072 [Sulfolobus islandicus L.S.2.15]
 gi|227457377|gb|ACP36064.1| hypothetical protein LS215_2072 [Sulfolobus islandicus L.S.2.15]
          Length = 304

 Score = 41.3 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +   +++++ L + +K +      ++     E  K +    K K ++N E     KI   
Sbjct: 147 INNVEQRIQELKAKMKDTDKVTKSKISIKLRELYKKRSELYKSKNKINAELRKFEKI--- 203

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSG 823
                +I   +  +LK  +  L+ +I+S 
Sbjct: 204 ----TLIDNEEINDLKKKVTELKSQIKST 228


>gi|189529117|ref|XP_001338000.2| PREDICTED: e3 ubiquitin/ISG15 ligase TRIM25-like [Danio rerio]
          Length = 553

 Score = 41.3 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R + +  +D       +C   H    G  ++      +S +  +  ++ +T  +      
Sbjct: 154 RPLEIYCQDDHQCICCMCTDNHK---GHKVVYVDTEWTSKKKVLEEMK-LTCLKLIQERE 209

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-KLQLIHAKRKLQLNVED 785
              ++L   A  LK S    V ++E+++ E    L+   ++ K Q+  ++
Sbjct: 210 KGQQELSEAAKLLKSSADEAVEKMEKVFTELICSLEKKRSEIKEQIRAQE 259


>gi|148668620|gb|EDL00939.1| homer homolog 1 (Drosophila), isoform CRA_c [Mus musculus]
          Length = 366

 Score = 41.3 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 61/177 (34%), Gaps = 6/177 (3%)

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
           +        +     +++N    +  P VT+           A     +     +    +
Sbjct: 140 SQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPTQNALPFPHSSAISKHWEAEL 199

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLM 736
            +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     SH  
Sbjct: 200 ATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHSHKT 259

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             ++ ++ L   LKV +  +  R+++  +  R+LQ        +L   ++    +  
Sbjct: 260 ELNQTVQELEETLKVKEEEI-ERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLEG 315


>gi|165873437|ref|ZP_02218036.1| S-layer protein [Bacillus anthracis str. A0488]
 gi|167636804|ref|ZP_02395087.1| S-layer protein [Bacillus anthracis str. A0442]
 gi|167642158|ref|ZP_02400380.1| S-layer protein [Bacillus anthracis str. A0193]
 gi|170709508|ref|ZP_02899908.1| S-layer protein [Bacillus anthracis str. A0389]
 gi|177656413|ref|ZP_02937306.1| S-layer protein [Bacillus anthracis str. A0174]
 gi|227811541|ref|YP_002811552.1| S-layer protein [Bacillus anthracis str. CDC 684]
 gi|254739106|ref|ZP_05196808.1| S-layer protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254744902|ref|ZP_05202580.1| S-layer protein [Bacillus anthracis str. Kruger B]
 gi|254762540|ref|ZP_05214380.1| S-layer protein [Bacillus anthracis str. Australia 94]
 gi|164710812|gb|EDR16390.1| S-layer protein [Bacillus anthracis str. A0488]
 gi|167509841|gb|EDR85265.1| S-layer protein [Bacillus anthracis str. A0193]
 gi|167527730|gb|EDR90569.1| S-layer protein [Bacillus anthracis str. A0442]
 gi|170125469|gb|EDS94396.1| S-layer protein [Bacillus anthracis str. A0389]
 gi|172079773|gb|EDT64890.1| S-layer protein [Bacillus anthracis str. A0174]
 gi|227008028|gb|ACP17770.1| S-layer protein [Bacillus anthracis str. CDC 684]
          Length = 687

 Score = 41.3 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
                     D+K+K+    L   + +++ R+ E  E  +K   ++ K      V++   
Sbjct: 358 MELIKQQSEFDKKIKNEKDDLNKKREDLINRIAESKELAKKKAELNTKLVELFKVQEALN 417

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQK 818
            K     +  + +      EL+ + D  + 
Sbjct: 418 KKSGQYLYYINKLD----NELRELADKYKN 443


>gi|154249899|ref|YP_001410724.1| chromosome segregation protein SMC [Fervidobacterium nodosum Rt17-B1]
 gi|154153835|gb|ABS61067.1| chromosome segregation protein SMC [Fervidobacterium nodosum Rt17-B1]
          Length = 1164

 Score = 41.3 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 61/174 (35%), Gaps = 42/174 (24%)

Query: 736  MGQDEKLKSLASFL-------KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              + E L++ +  L       K  +   + ++E++ +E R  +      K +++  ++  
Sbjct: 866  EKELETLRNTSQELFSGIREKKAGKEEKLQKLEQLEKELRDQKTEIESIKERIHETEMRL 925

Query: 789  HK----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             +    I+++        +V+ ++L  + + ++               E K  +L  V  
Sbjct: 926  QEISFRISNIPEEYRTPIDVEPEKLDELANEIKD-------------LENKLKMLGAVDL 972

Query: 845  DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              +D + A++  +   ++L                      + A   +   +++
Sbjct: 973  TAIDEYKAIE--QEYNELL----------------KQKQDLEDAKKKLEELIEQ 1008


>gi|207343115|gb|EDZ70677.1| YLR086Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 754

 Score = 41.3 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHK 790
             L  +   L  +   LK    ++   +    +E     LQL   + ++QL   +LS  +
Sbjct: 524 QLLEKERSILDDIKLSLKDKTKDISAEIIRHEKELEPWDLQLQEKESQIQLAESELSLLE 583

Query: 791 IADVNFMSHIISEVDSK---------ELKSVMDALQKKIQS 822
                 +   +  ++ K         EL+ ++  L+KK+ S
Sbjct: 584 ETQAK-LKKNVETLEEKILAKKTHKQELQDLILDLKKKLNS 623


>gi|194226776|ref|XP_001500252.2| PREDICTED: myosin, heavy chain 9, non-muscle [Equus caballus]
          Length = 1862

 Score = 41.3 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 65/179 (36%), Gaps = 19/179 (10%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 1070 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNK 1129

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +VN +   + E ++K  ++ + 
Sbjct: 1130 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQ 1188

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGG 867
             +++K    +  L    ++ K        +  L++          +LA     +L G G
Sbjct: 1189 EMRQKHSQAVEELAEQLEQTKRV------KANLEKAKQTLENERGELANEVKALLQGKG 1241


>gi|154421401|ref|XP_001583714.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121917957|gb|EAY22728.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2250

 Score = 41.3 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 36/103 (34%), Gaps = 13/103 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-------- 780
           ++   H     E+  ++   LK +   +  +++ + +     +      K +        
Sbjct: 287 KQLIQHHQNLKEQQDAITKMLKSNPSEIPSQIQNLLDAKNSSEKQAKNLKSELGKTTNKL 346

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           L+ ++    K   +  +     E ++ + K  +  L +++   
Sbjct: 347 LDAQNELNDKANSIKNL-----EYENDQTKQTVKRLNEQLADA 384


>gi|3834607|gb|AAC71022.1| homer-1b [Mus musculus]
          Length = 354

 Score = 41.3 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 61/177 (34%), Gaps = 6/177 (3%)

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
           +        +     +++N    +  P VT+           A     +     +    +
Sbjct: 128 SQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPTQNALPFPHSSAISKHWEAEL 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLM 736
            +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     SH  
Sbjct: 188 ATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHSHKT 247

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             ++ ++ L   LKV +  +  R+++  +  R+LQ        +L   ++    +  
Sbjct: 248 ELNQTVQELEETLKVKEEEI-ERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLEG 303


>gi|297741559|emb|CBI32691.3| unnamed protein product [Vitis vinifera]
          Length = 508

 Score = 41.3 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 12/131 (9%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           + L  +  K K +   LKV+  +   +++ I EE +K +   A  K  L  ++     I 
Sbjct: 362 AELEAELRKAKVIVEDLKVNLMDKETKLQNISEENKKSEATLADLKTSLLDKETELQSIT 421

Query: 793 DVN-----FMSHIISEVDSKELKSV---MDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           + N      +    +E D  EL+ +    D  +K  ++   ML       K   ++  T 
Sbjct: 422 EENEMLKLEIKKKETENDKAELRRLKVQSDQWRKAAEAAAAML-STGNNGK---IVERTG 477

Query: 845 DLLDRFNAVDL 855
            L + ++ ++L
Sbjct: 478 SLDNNYHTIEL 488


>gi|212715863|ref|ZP_03323991.1| hypothetical protein BIFCAT_00769 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661230|gb|EEB21805.1| hypothetical protein BIFCAT_00769 [Bifidobacterium catenulatum DSM
           16992]
          Length = 498

 Score = 41.3 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 22/126 (17%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ------------GNVVGRVEEIWEEY 767
           + R+ A    RA   L   ++  K+L+     S              +   R+  +  + 
Sbjct: 103 LYRLTARA-HRAIEALDRLEDTTKALSGAQANSIIMEIEHARMQLTADPRERIRLLERDI 161

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVM-------DALQKK 819
            + Q    + K    ++ L+  ++ D+  + H  +  V   +L+ +        D L++ 
Sbjct: 162 EERQKQIDELKHSDTLDKLTSQQVGDIIGVIHNTLRGVPI-DLRELALEERDNGDNLRRS 220

Query: 820 IQSGII 825
           +QSG I
Sbjct: 221 MQSGSI 226


>gi|154487294|ref|ZP_02028701.1| hypothetical protein BIFADO_01139 [Bifidobacterium adolescentis
           L2-32]
 gi|154083812|gb|EDN82857.1| hypothetical protein BIFADO_01139 [Bifidobacterium adolescentis
           L2-32]
          Length = 498

 Score = 41.3 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 22/126 (17%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ------------GNVVGRVEEIWEEY 767
           + R+ A    RA   L   ++  K+L+     S              +   R+  +  + 
Sbjct: 103 LYRLTARA-HRAIEALDRLEDTTKALSGAQANSIIMEIEHARMQLTADPRERIRLLERDI 161

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVM-------DALQKK 819
            + Q    + K    ++ L+  ++ D+  + H  +  V   +L+ +        D L++ 
Sbjct: 162 EERQKQIDELKHSDTLDKLTSQQVGDIIGVIHNTLRGVPI-DLRELALEERDNGDNLRRS 220

Query: 820 IQSGII 825
           +QSG I
Sbjct: 221 MQSGSI 226


>gi|291485473|dbj|BAI86548.1| hypothetical protein BSNT_04424 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 248

 Score = 41.3 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  + + + S A  LK ++ +   ++E++  E   L+      K ++     +  ++ 
Sbjct: 86  EELEKEYKSVSSEAKKLKDNKED-QDKLEKLKNENSDLKKTQKSLKAEIKELQENQKQLK 144

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +        ++ +++ L+     L+ +++  
Sbjct: 145 E----DAKTAKAENETLRQDKTKLENQLKET 171


>gi|170037816|ref|XP_001846751.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167881155|gb|EDS44538.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 1064

 Score = 41.3 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 29/142 (20%)

Query: 702 TGEIMLLYIVSES---SIRAGIRRIEAI----------TGQRA--RSHLMGQDEKLKSLA 746
           T E+  L   +E     +     R+ A            G +A     +     +++  A
Sbjct: 560 TAELDALKKSNEELKKEVANLKDRLVAAEGLSKELQEGAGDQAELLKTVANLKAEVQKAA 619

Query: 747 SFLKVSQGN---VVGRVEEIW-------EEYRKLQLIHAKRKLQLNVEDLSCHK----IA 792
              +V       +V  VE           E ++L+      K Q   ++    +    + 
Sbjct: 620 EEAQVKDAEMKLLVKDVESAKVQAEAKEAEMKQLEKEVESVKAQAEAKEAEIKQLEQVVE 679

Query: 793 DVNFMSHIISEVDSKELKSVMD 814
            V   +    EV  ++LK V++
Sbjct: 680 AVKVEAEKAKEVSVEKLKEVVE 701



 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 53/144 (36%), Gaps = 24/144 (16%)

Query: 727 TGQRARSHLMGQDEKLKSLASFL--KVSQGNVVGR-VEEIWEEYRKLQLIHAKRKLQLNV 783
               A + L+   ++L      L  K  Q +VV +  E++  +   L++    +  QL  
Sbjct: 484 ASGGAGAQLVELQKQLDEAKRTLREKADQLDVVSKEKEQLGAKVDGLEVAQKAKDKQLEA 543

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI--V 841
             +          ++  +   +   LK   + L+K++ +            K  ++    
Sbjct: 544 ARVEQE---GQPVVTAPMDTAELDALKKSNEELKKEVANL-----------KDRLVAAEG 589

Query: 842 VTEDLLDRFNAVD---LARLSAKV 862
           ++++L +   A D   L +  A +
Sbjct: 590 LSKELQEG--AGDQAELLKTVANL 611


>gi|317139003|ref|XP_001817209.2| protein kinase C substrate [Aspergillus oryzae RIB40]
          Length = 603

 Score = 41.3 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y    RV +    D  +          V  T        + +   +   +R +++T    
Sbjct: 155 YVPFQRV-NDGICDYDLCCDGSDEWARVGGTKCEDKCKEIGKEWRKKEEKRQKSMT---- 209

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE----EYRKLQLIHAKRKLQLNVEDLS 787
            + L  + E L       K  + N+  R+E   +    + + L+    + + Q   + ++
Sbjct: 210 -TALKKKKELLTDAGRQQKEVEENI-NRLEIQIQGQEIKLKDLEADLEEIEKQERSKVVT 267

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
             K   VN ++ +      +EL++ +  ++K+
Sbjct: 268 GKKAGKVNVLAQVAKGR-VEELRTALAEVRKE 298


>gi|297739325|emb|CBI28976.3| unnamed protein product [Vitis vinifera]
          Length = 223

 Score = 41.3 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           +L+S A  LK S G++  +++E+  E  +L+    + K +    +     I+
Sbjct: 112 QLRSEAQKLKESNGDLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKAIS 163


>gi|225447370|ref|XP_002274829.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 244

 Score = 41.3 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           +L+S A  LK S G++  +++E+  E  +L+    + K +    +     I+
Sbjct: 133 QLRSEAQKLKESNGDLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKAIS 184


>gi|147785376|emb|CAN70830.1| hypothetical protein VITISV_005283 [Vitis vinifera]
          Length = 384

 Score = 41.3 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           +L+S A  LK S G++  +++E+  E  +L+    + K +    +     I+
Sbjct: 103 QLRSEAQKLKESNGDLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKAIS 154


>gi|94995090|ref|YP_603188.1| Putative surface protein [Streptococcus pyogenes MGAS10750]
 gi|94548598|gb|ABF38644.1| Putative surface protein [Streptococcus pyogenes MGAS10750]
          Length = 783

 Score = 41.3 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +KI
Sbjct: 305 IKDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGEKLKQEKAKLEEEIRNKD---NKI 361

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 362 AQLNKEIEDLKNSNNDELIAEITQLKDELK 391



 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK-----------LQLNVE 784
               +  K +      +   ++  + ++ +E ++LQ  + K K            +    
Sbjct: 359 NKIAQLNKEIEDLKNSNNDELIAEITQLKDELKRLQDENEKLKEDYSSTKWELEAEKEKT 418

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           D + +KI ++      +    +K+ K + D 
Sbjct: 419 DKNENKIKEMQEKLESLEGELAKKTKEIGDK 449


>gi|83765064|dbj|BAE55207.1| unnamed protein product [Aspergillus oryzae]
          Length = 570

 Score = 41.3 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y    RV +    D  +          V  T        + +   +   +R +++T    
Sbjct: 122 YVPFQRV-NDGICDYDLCCDGSDEWARVGGTKCEDKCKEIGKEWRKKEEKRQKSMT---- 176

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE----EYRKLQLIHAKRKLQLNVEDLS 787
            + L  + E L       K  + N+  R+E   +    + + L+    + + Q   + ++
Sbjct: 177 -TALKKKKELLTDAGRQQKEVEENI-NRLEIQIQGQEIKLKDLEADLEEIEKQERSKVVT 234

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
             K   VN ++ +      +EL++ +  ++K+
Sbjct: 235 GKKAGKVNVLAQVAKGR-VEELRTALAEVRKE 265


>gi|307103531|gb|EFN51790.1| hypothetical protein CHLNCDRAFT_56367 [Chlorella variabilis]
          Length = 594

 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 7/163 (4%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  H++  A+  +        G   T  G  +D    +P+T  +L  I   +  I+ +N
Sbjct: 27  HSCAHIMAMAVQRLHKGAQVTIGPW-TDRGFFYDFDMPQPLTERDLPKIRKEMQRILKKN 85

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LP V      E        ++L       + +  +       H   LC G HV++TG+I+
Sbjct: 86  LPFVREDAAGEPYKLEILDSILERDPQAPITIYHIGTPGSEDHWWDLCAGPHVAATGDIL 145

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +  ES   A   R     G   R  L             L
Sbjct: 146 PDALDLESVAGA-YWR-----GDETRPMLQRIYGTAWQTKEQL 182


>gi|317057382|ref|YP_004105849.1| peptidase M23 [Ruminococcus albus 7]
 gi|315449651|gb|ADU23215.1| Peptidase M23 [Ruminococcus albus 7]
          Length = 596

 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 11/106 (10%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q A      + +K  +L    K     +     +  +  R+ Q    +++ Q N+E +  
Sbjct: 278 QAALDDQQAELDKQYALFDAKKAKLDEIYNSSTQAKDLLREKQKKLKEQEAQFNLEKIKT 337

Query: 789 HK---------IADVNF--MSHIISEVDSKELKSVMDALQKKIQSG 823
            +         I  V F        E+ ++ LK + D++++++++G
Sbjct: 338 AESLGTILKPTIGAVPFDEEVAATEELANERLKELHDSIKERLKNG 383


>gi|193216694|ref|YP_001999936.1| massive surface protein MspB [Mycoplasma arthritidis 158L3-1]
 gi|193002017|gb|ACF07232.1| massive surface protein MspB [Mycoplasma arthritidis 158L3-1]
          Length = 1934

 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 33/79 (41%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
              L   ++K + LA   K  + +   R +E+ E+ ++LQ        +L   D S     
Sbjct: 968  KKLEEIEQKQQELADIKKQQEQSEEKRAKELAEQAKQLQAELENLVNKLEPFDASKEYEN 1027

Query: 793  DVNFMSHIISEVDSKELKS 811
             +  +   + E++   LK+
Sbjct: 1028 KIKDLEDKLKELEEGFLKA 1046



 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 736 MGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            G DE  K L   +K ++ ++     ++E+I +E +KLQ        ++         I+
Sbjct: 296 KGLDELAKELDKAIKDAENSLKHGTEKLEKIKQENQKLQNDINALVNKI------AKDIS 349

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           D N ++    + + K LK   D L+K IQ  
Sbjct: 350 DANKLTLQSEDSEFKRLK---DELKKDIQEA 377



 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 2/94 (2%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
             + +    ++   +   LK         ++ +      L+ ++  R L     +L     
Sbjct: 1539 ITEVNNALDEQTKIEQELKGLIKETEDHIQALQNALDNLKKVNEIRNLDGAKNELLGKIT 1598

Query: 792  ADVNFMS--HIISEVDSKELKSVMDALQKKIQSG 823
                F+    I    D   LK+ ++ L+ KI + 
Sbjct: 1599 NAQAFLESPKITKLKDFDSLKNAIETLKTKINNA 1632



 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 67/194 (34%), Gaps = 40/194 (20%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK------LQLIHAKRKLQLN 782
           ++A      + ++L+   + LK S   ++  + +   E         +Q +  K K   N
Sbjct: 139 KKALEEAKTKLKELQEKEAKLKESAQKLLAEINQALSEVPDAKLPLVIQSLINKLKNLAN 198

Query: 783 VEDLSCHKIADVNFMSHIISEVDSK-ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
             +    ++ +   +       D+  ++K  +  LQK+       L+  S E+   +   
Sbjct: 199 ASEALQQELNNSRLIEEAKKLSDANLQIKDAISELQKR-------LLDKSPEELEKLAKE 251

Query: 842 VTEDLLDRFNAVDLARLS----------------AKVLGGGGGGGRPHMAQSGGPN--GN 883
             +DL     AV+ A+                  AK L           A + G +    
Sbjct: 252 KIKDLEKAKKAVEDAKNISTLPNALESLKKDLDQAKEL--------KDHATAKGLDELAK 303

Query: 884 KADQAIAGVASFLK 897
           + D+AI    + LK
Sbjct: 304 ELDKAIKDAENSLK 317



 Score = 37.8 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 740  EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
            EKLK+    L  ++  +  +   +  +      I  K +     +     ++AD+     
Sbjct: 933  EKLKNAEDALNNAKNELENKKNSLVGDKENQDKIDKKLEEIEQKQ----QELADIKKQQE 988

Query: 800  IISEVDSKELKSVMDALQKKIQSGIIML----VGISKEKKASVLIVVTEDLLDRFN 851
               E  +KEL      LQ ++++ +  L         E K        +DL D+  
Sbjct: 989  QSEEKRAKELAEQAKQLQAELENLVNKLEPFDASKEYENKI-------KDLEDKLK 1037


>gi|269966260|ref|ZP_06180349.1| outer membrane protein OmpH [Vibrio alginolyticus 40B]
 gi|269829175|gb|EEZ83420.1| outer membrane protein OmpH [Vibrio alginolyticus 40B]
          Length = 166

 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEI--------WEEYRKLQLIHAKRKLQLNVEDL 786
           L    +  KS A  LK  Q     ++E++         +E  KL++  AK   +  V+  
Sbjct: 46  LQKMQKDFKSKADELKSIQAQAKTKIEKLQRDGELLGQDEVEKLRIDIAKLDSEYKVKAQ 105

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +  K +              K ++  +  +  K    +++ +   +  K      ++ED+
Sbjct: 106 ALEKASARREAEEKAKLF--KTIQDAVKKVADKNGYDLVIDISALQYGKPEY--NISEDV 161

Query: 847 LDRFN 851
           +    
Sbjct: 162 IKALK 166


>gi|260102864|ref|ZP_05753101.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|558221|emb|CAA57505.1| orf [Lactobacillus helveticus DSM 20075]
 gi|260083332|gb|EEW67452.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 192

 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
             + ++ +A  + +   ++V   + I +E ++  +   K   +  + D    KI   + +
Sbjct: 1   MSKTVREIAELMGIPSDDLVKEKQRIRDEIKRQNIETKKSGNKFVIADSDVEKI--TSAL 58

Query: 798 SHIISEVDSK------ELKSVMDALQKKIQS 822
              + + DSK      EL  +++ L+ +   
Sbjct: 59  KEKLDKEDSKKKEDNEELLQMIEQLKAENSK 89


>gi|291400172|ref|XP_002716457.1| PREDICTED: SKI-like isoform 2 [Oryctolagus cuniculus]
          Length = 637

 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 14/105 (13%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E ++  +A   L  + + L+     L+        R+EE + E + L+    +   Q  
Sbjct: 512 VEMLSSSKAMRELTEEQQNLQKELESLQT---EHAQRMEEFYVEQKDLEKKLEQVMKQKC 568

Query: 783 VEDLSCHKIADVNFMSHIIS--------EVDSKELKSVMDALQKK 819
             D +  K  +  + + +          E D +EL+   D L+++
Sbjct: 569 TCDSNLEKDKEAEYAAQLAELRQRLDHAEADRQELQ---DELRQE 610


>gi|291400170|ref|XP_002716456.1| PREDICTED: SKI-like isoform 1 [Oryctolagus cuniculus]
          Length = 683

 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 14/105 (13%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E ++  +A   L  + + L+     L+        R+EE + E + L+    +   Q  
Sbjct: 558 VEMLSSSKAMRELTEEQQNLQKELESLQT---EHAQRMEEFYVEQKDLEKKLEQVMKQKC 614

Query: 783 VEDLSCHKIADVNFMSHIIS--------EVDSKELKSVMDALQKK 819
             D +  K  +  + + +          E D +EL+   D L+++
Sbjct: 615 TCDSNLEKDKEAEYAAQLAELRQRLDHAEADRQELQ---DELRQE 656


>gi|226953498|ref|ZP_03823962.1| chromosome segregation ATPase [Acinetobacter sp. ATCC 27244]
 gi|226835783|gb|EEH68166.1| chromosome segregation ATPase [Acinetobacter sp. ATCC 27244]
          Length = 1152

 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKI 791
             +  Q E+ +      K  + + + +++E+  E  + + +   + + +L        KI
Sbjct: 886 EQVREQLEQKRLAWQAAKSDREHYLDQLKELNAEVLQDVSIEIKEHQQKLEKAQQQFEKI 945

Query: 792 ADVNF--------MSHIISEVD--SKELKSVMDALQKKIQS 822
             VN         +S    E++   ++L++ +D L+  ++S
Sbjct: 946 GAVNLAASQEYEEVSQRFDELNHQMQDLQNTVDQLKAAMKS 986


>gi|238482029|ref|XP_002372253.1| protein kinase C substrate, putative [Aspergillus flavus NRRL3357]
 gi|220700303|gb|EED56641.1| protein kinase C substrate, putative [Aspergillus flavus NRRL3357]
          Length = 570

 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y    RV +    D  +          V  T        + +   +   +R +++T    
Sbjct: 122 YVPFQRV-NDGICDYDLCCDGSDEWARVGGTKCEDKCKEIGKEWRKKEEKRQKSMT---- 176

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE----EYRKLQLIHAKRKLQLNVEDLS 787
            + L  + E L       K  + N+  R+E   +    + + L+    + + Q   + ++
Sbjct: 177 -TALKKKKELLTDAGRQQKEVEENI-NRLEIQIQGQEIKLKDLEADLEEIEKQERSKVVT 234

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
             K   VN ++ +      +EL++ +  ++K+
Sbjct: 235 GKKAGKVNVLAQVAKGR-VEELRTALAEVRKE 265


>gi|149689690|ref|XP_001497748.1| PREDICTED: STE20-like kinase (yeast) isoform 1 [Equus caballus]
          Length = 1242

 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 909 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 965

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 966 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 995


>gi|109090484|ref|XP_001114162.1| PREDICTED: STE20-like serine/threonine-protein kinase-like isoform
           2 [Macaca mulatta]
          Length = 1236

 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 903 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 959

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 960 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 989


>gi|50554989|ref|XP_504903.1| YALI0F02387p [Yarrowia lipolytica]
 gi|49650773|emb|CAG77705.1| YALI0F02387p [Yarrowia lipolytica]
          Length = 1906

 Score = 41.3 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 44/114 (38%), Gaps = 13/114 (11%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI- 791
            + L  +   ++SL + L+     +  + EE+  + ++L+   ++ + +         ++ 
Sbjct: 1161 AELAEKVALVESLTAKLESKDKELATKTEELSAKEKELETKTSELETKTAELTTKSKELT 1220

Query: 792  ---ADVNFMSHIISEVDSKE---------LKSVMDALQKKIQSGIIMLVGISKE 833
                +    S  + E+++           LK++ D L K +      LV    E
Sbjct: 1221 AKSDEATTYSAKVKELETSSAALEKKQTTLKAMADNLTKDLAEKTKELVAAKSE 1274



 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 52/141 (36%), Gaps = 18/141 (12%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +++ S    Q + + +    +          ++ + EE  +      K K  L   +   
Sbjct: 1013 EKSLSAAEAQSKSVAAEKEKVSGQIATHEETIKRLKEELSERTAELDKLKSDLASSE--- 1069

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS---VLIVVTE- 844
                    ++    +V +K+  + ++ L+ ++++    L   +KE +     +    ++ 
Sbjct: 1070 ------KDLASKTKDVSAKD--TEIEKLKSELETANSKLASTAKEVEILTSELKAAKSDA 1121

Query: 845  -DLLDRFNAV--DLARLSAKV 862
             D   +  AV  +L    +KV
Sbjct: 1122 CDSETKIKAVESELVEQKSKV 1142


>gi|301756234|ref|XP_002913949.1| PREDICTED: STE20-like serine/threonine-protein kinase-like
           [Ailuropoda melanoleuca]
 gi|281352089|gb|EFB27673.1| hypothetical protein PANDA_001804 [Ailuropoda melanoleuca]
          Length = 1242

 Score = 41.3 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 909 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 965

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 966 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 995


>gi|194041975|ref|XP_001929465.1| PREDICTED: STE20-like kinase isoform 2 [Sus scrofa]
          Length = 1237

 Score = 41.3 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 904 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 960

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 961 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 990


>gi|73976729|ref|XP_848704.1| PREDICTED: similar to Akt-phosphorylation enhancer [Canis
           familiaris]
          Length = 273

 Score = 41.3 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +   K +A  L ++Q      ++ + +E ++ +   +K    L    L   K+ +     
Sbjct: 141 ERNAKQVAERLGMAQEE----IQRLTDELKRKEKEQSKLDSALEKAQLEIKKLKEN---L 193

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIML 827
             + E DS +L+       +++   I+ L
Sbjct: 194 TKLQENDSVDLQK-AKEHNQRLDEEILAL 221


>gi|269968488|ref|ZP_06182498.1| putative alanyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269826904|gb|EEZ81228.1| putative alanyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 230

 Score = 41.3 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+     +    +V  DQT F+AE+GGQ  D G   G  + +          G+ + + +
Sbjct: 31  ELNSRVTNVDGNKVELDQTIFFAESGGQESDKGTINGIPVLIAQ------KLGVRLIYTL 84

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +  +ID++ R  L   H A  ++           + + G+ I+ +  R 
Sbjct: 85  ESSPNFTLGDIVTTSIDWKRRYALMKLHFAAEVVLEMFYQRRE-GIVKIGAHISENKSRI 143

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   S+ I                   L  +   +       S   +    +     R  
Sbjct: 144 DFEWSENIGPL----------------LKEIETDVQDLINSDSVIISDFSDQ-ESERRYW 186

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            V+       +   CGGTH+  T E+  + +    +I  G  R+E
Sbjct: 187 RVDGF-----AQVPCGGTHLKRTSEVGQIQLKR-KNIGKGKERVE 225


>gi|313243410|emb|CBY42179.1| unnamed protein product [Oikopleura dioica]
          Length = 356

 Score = 41.3 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-D 793
           L  + EKL+ L   LK+ + N+V + +++ +  + +Q      K ++        K+  +
Sbjct: 145 LSQRREKLEELHGKLKIRKENLVEKEKKLRDFEKSVQEKENLIKSKMAAIKARDDKLNAE 204

Query: 794 VNFMSHIISEVDSKE 808
           +  +    +++DSK+
Sbjct: 205 LKRLEKQEADLDSKQ 219


>gi|313241575|emb|CBY33819.1| unnamed protein product [Oikopleura dioica]
          Length = 370

 Score = 41.3 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-D 793
           L  + EKL+ L   LK+ + N+V + +++ +  + +Q      K ++        K+  +
Sbjct: 156 LSQRREKLEELHGKLKIRKENLVEKEKKLRDFEKSVQEKENLIKSKMAAIKARDDKLNAE 215

Query: 794 VNFMSHIISEVDSKE 808
           +  +    +++DSK+
Sbjct: 216 LKRLEKQEADLDSKQ 230


>gi|300120791|emb|CBK21033.2| unnamed protein product [Blastocystis hominis]
          Length = 821

 Score = 41.3 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 18/120 (15%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--------LNVEDLSCHKI 791
           E+  SLA   K     +  +++ + E+   LQ   + +K +        ++   L     
Sbjct: 2   ERYDSLAGSTKAQNSKIKEKIKRLEEKNLALQKQLSSKKEEVKQLSTRIISAGQLLNDTK 61

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
            + + +S  I+ ++ KEL    D  +K+  S   +L    ++ K        + L ++ +
Sbjct: 62  KENDTLSEQIASLN-KELSDQKDKAKKETASLKALLA--ERDAKI-------KKLNEKVD 111


>gi|224107335|ref|XP_002314450.1| predicted protein [Populus trichocarpa]
 gi|222863490|gb|EEF00621.1| predicted protein [Populus trichocarpa]
          Length = 246

 Score = 41.3 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 84/223 (37%), Gaps = 18/223 (8%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVH------H 557
              +  ++ D T F+ + GGQL DTG          +  + DV+ K   ++ +       
Sbjct: 30  EDGRNALILDSTIFHPQGGGQLADTGVITIAADSSFKFIVQDVRSKDGIVYHYGVIEEGS 89

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  +     + L +D   R+  S  HSA HL+   L  +   H+        PDG 
Sbjct: 90  GKDFEMEVVRGGEVFLFVDEARRKLNSRLHSAGHLMDACLEEVGLGHLEPGKGYHFPDGP 149

Query: 618 RFDV--THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND 674
             +   T  +    ++   +E   N +I++   V   ++  E+A    G         + 
Sbjct: 150 FVEYKGTIPQNELQSKQHELELAANALISRGGKVSAAVLPYEEAAELCGGFLPDYIPKDS 209

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
             RVV +        S+  CGGTHVS   EI+ L +      +
Sbjct: 210 TPRVVKLGN------SAVCCGGTHVSDISEIISLQVSQIRKKK 246


>gi|169146004|emb|CAQ13507.1| novel protein [Danio rerio]
          Length = 298

 Score = 41.3 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 51/141 (36%), Gaps = 16/141 (11%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA----KRK 778
           ++A  GQ  +  +   +E++K     LK  Q     ++  + ++  +     A    K +
Sbjct: 133 LKANCGQDLKDKIRQLEEEVKESKQKLKKLQQESDDQIASLEKQISRKNQQLATTEDKLE 192

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL-----QKKIQSGIIM---LVGI 830
                      K+  +N     I++  +  LK     +     + +++   +    ++  
Sbjct: 193 QTNAENAALIKKLNSLNDEIDKITDEKNNALKKAEKEIAALNDKLQLKDDALAKKDVLLK 252

Query: 831 SKEKKASVLIVVTEDLLDRFN 851
            K++  +V+    +D  D   
Sbjct: 253 EKDEYINVV----KDQRDSLK 269


>gi|167389900|ref|XP_001739125.1| kinetochore protein NDC80 [Entamoeba dispar SAW760]
 gi|165897291|gb|EDR24502.1| kinetochore protein NDC80, putative [Entamoeba dispar SAW760]
          Length = 615

 Score = 41.3 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHI 800
           ++ L S L  +Q     ++ E+ E+ ++ Q    + ++ LN E    +K+ + +N  +  
Sbjct: 368 IQELQSTLNKTQTENGIKIAELKEKLKESQKELEEIQINLNQEKEINNKLNEQINIFNKK 427

Query: 801 ISEVDSKE--LKSVMDALQKKIQSG 823
           I  ++ K   L+ ++  LQ++I++ 
Sbjct: 428 IQSLNDKNEGLEKLIVTLQQEIENS 452


>gi|41281453|ref|NP_055535.2| STE20-like serine/threonine-protein kinase [Homo sapiens]
 gi|74762732|sp|Q9H2G2|SLK_HUMAN RecName: Full=STE20-like serine/threonine-protein kinase;
           Short=STE20-like kinase; Short=hSLK; AltName: Full=CTCL
           tumor antigen se20-9; AltName: Full=STE20-related
           serine/threonine-protein kinase; Short=STE20-related
           kinase; AltName: Full=Serine/threonine-protein kinase 2
 gi|11385654|gb|AAG34908.1|AF273048_1 CTCL tumor antigen se20-9 [Homo sapiens]
 gi|55664645|emb|CAH70404.1| Ste20-related serine\/threonine kinase (SLK) [Homo sapiens]
 gi|55957391|emb|CAI12395.1| Ste20-related serine\/threonine kinase (SLK) [Homo sapiens]
 gi|119570000|gb|EAW49615.1| STE20-like kinase (yeast), isoform CRA_a [Homo sapiens]
 gi|119570003|gb|EAW49618.1| STE20-like kinase (yeast), isoform CRA_a [Homo sapiens]
          Length = 1235

 Score = 41.3 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 902 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 958

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 959 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 988


>gi|319649441|ref|ZP_08003597.1| phage minor structural protein GP20 [Bacillus sp. 2_A_57_CT2]
 gi|317398603|gb|EFV79285.1| phage minor structural protein GP20 [Bacillus sp. 2_A_57_CT2]
          Length = 192

 Score = 41.3 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-----V 783
           +  +  L  +D +L  L    K     +  ++ E+ E  +K +  + K+  Q        
Sbjct: 46  KELKKQLKDRDAQLAELGEKAK-GHEELTAKINELTEANKKTEADYQKKLDQQAFDFALK 104

Query: 784 EDLSCHKIADVNFMSHIIS----EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             L+  K  +   +  +++    ++D  +L  + D L+   +S   +     +  K + 
Sbjct: 105 SALTNAKAKNPKAVEALLNKESIKLDGDKLLGLEDQLKALQKSDAYLFETEQQPSKPTF 163


>gi|292610867|ref|XP_696219.3| PREDICTED: hypothetical protein LOC567822 [Danio rerio]
          Length = 1192

 Score = 41.3 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 51/141 (36%), Gaps = 16/141 (11%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA----KRK 778
           ++A  GQ  +  +   +E++K     LK  Q     ++  + ++  +     A    K +
Sbjct: 747 LKANCGQDLKDKIRQLEEEVKESKQKLKKLQQESDDQIASLEKQISRKNQQLATTEDKLE 806

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL-----QKKIQSGIIM---LVGI 830
                      K+  +N     I++  +  LK     +     + +++   +    ++  
Sbjct: 807 QTNAENAALIKKLNSLNDEIDKITDEKNNALKKAEKEIAALNDKLQLKDDALAKKDVLLK 866

Query: 831 SKEKKASVLIVVTEDLLDRFN 851
            K++  +V+    +D  D   
Sbjct: 867 EKDEYINVV----KDQRDSLK 883


>gi|297687336|ref|XP_002821172.1| PREDICTED: STE20-like serine/threonine-protein kinase-like isoform
           1 [Pongo abelii]
          Length = 1236

 Score = 41.3 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 903 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 959

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 960 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 989


>gi|114632691|ref|XP_508017.2| PREDICTED: serine/threonine kinase 2 isoform 5 [Pan troglodytes]
          Length = 1236

 Score = 41.3 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 903 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 959

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 960 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 989


>gi|330805822|ref|XP_003290876.1| hypothetical protein DICPUDRAFT_81588 [Dictyostelium purpureum]
 gi|325078961|gb|EGC32585.1| hypothetical protein DICPUDRAFT_81588 [Dictyostelium purpureum]
          Length = 116

 Score = 41.3 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSK 807
           L          + ++ EE ++L         +LN    LS  +I   N     +     K
Sbjct: 3   LASKPNAAEQYISQLLEENKRLNREVKDLSDKLNNALTLSDEQINLYNGEVGKV-----K 57

Query: 808 ELKSVMDALQKKIQS 822
            LK +M+ L+ KIQS
Sbjct: 58  LLKEMMEELRLKIQS 72


>gi|160891919|ref|ZP_02072922.1| hypothetical protein BACUNI_04377 [Bacteroides uniformis ATCC 8492]
 gi|317480389|ref|ZP_07939489.1| DNA repair protein RecN [Bacteroides sp. 4_1_36]
 gi|156858397|gb|EDO51828.1| hypothetical protein BACUNI_04377 [Bacteroides uniformis ATCC 8492]
 gi|316903467|gb|EFV25321.1| DNA repair protein RecN [Bacteroides sp. 4_1_36]
          Length = 556

 Score = 41.3 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQ 771
           +   G++R+  + G+ A   +     +LK ++  +   +  +     R++E+ E    + 
Sbjct: 249 NTMLGLQRVYPVAGELA-ERMESTYIELKDISQEVSGKEDEIEFNPERLDEVNERLNLIY 307

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +  K ++    E L+          +   S+   +ELK+  DAL  K++    +L
Sbjct: 308 TLQQKHRVSTVGELLALTDEYAAKLSAITSSDEHIEELKARCDALYNKVKKQAAVL 363


>gi|147900843|ref|NP_001084776.1| cingulin-like 1 [Xenopus laevis]
 gi|66911088|gb|AAH97786.1| LOC431812 protein [Xenopus laevis]
          Length = 670

 Score = 41.3 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-RKLQLIHAKRKLQLNVE 784
           +  +     L  ++ +L +L   LK         ++++ E+Y ++L+ I      ++   
Sbjct: 111 LVKEEQEDLLRKRERELTALKGALKEEVSTHDQEIDKLKEQYDKELKKIRDNLNEEVKNS 170

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
               ++  + + +  +      K L    + L++KI++
Sbjct: 171 SDIANQKNEASQLKAVFENK-VKVLLQENEELKRKIEN 207


>gi|118400729|ref|XP_001032686.1| Kinesin motor domain containing protein [Tetrahymena thermophila]
 gi|89287030|gb|EAR85023.1| Kinesin motor domain containing protein [Tetrahymena thermophila
           SB210]
          Length = 1284

 Score = 41.3 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 41/118 (34%), Gaps = 24/118 (20%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G+ A  +       L+ L   L      +  + + + ++ ++L+    + + QL   +  
Sbjct: 692 GESAEQYAERSSRNLRQLKEMLADQDFLIQEKRQRLKQKNKELREQQVELRNQLQYLEND 751

Query: 788 CHK------------------------IADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             +                        I  +      + E + +EL+ ++D L+ K+Q
Sbjct: 752 IKEKDARVQYVQDQNEQLKEQIERDREIIQLKIDKEELLEKNDEELRELIDRLKIKLQ 809



 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 47/119 (39%), Gaps = 10/119 (8%)

Query: 700  SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL---KSLASFLKVSQGNV 756
                E        E  +    RR +    +     +  +D++L   K   + LK    ++
Sbjct: 922  KRIDEAEDRAQTLEVKLNKLKRRFQ----EERNQIVEEKDQELIKKKEATARLKNEIKDL 977

Query: 757  VGRVEEIWEEYRKLQLIHAKRK-LQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSV 812
              RV+E+ ++ + L++ + K +     ++     K   +  +S  +  V  + K ++++
Sbjct: 978  ERRVQELTQDLKILKIENQKLQTFNEEIQRDQMQKNQQIKDLSEELESVQQELKRVRNI 1036


>gi|50550277|ref|XP_502611.1| YALI0D09251p [Yarrowia lipolytica]
 gi|73621944|sp|Q6C9Q1|SPB1_YARLI RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
           AltName: Full=2'-O-ribose RNA methyltransferase;
           AltName: Full=S-adenosyl-L-methionine-dependent
           methyltransferase
 gi|49648479|emb|CAG80799.1| YALI0D09251p [Yarrowia lipolytica]
          Length = 850

 Score = 41.3 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 36/112 (32%), Gaps = 5/112 (4%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           K     LK     +  R  +   E +  + + A R+L+   +                  
Sbjct: 724 KEAVEALKQKMKTLNARPIKKVLEAKGRKKMRALRRLEQMKKKSELINEDGARSEKEKAD 783

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
           ++  K ++ +    + K ++  ++  G   +     +      +  ++  VD
Sbjct: 784 DIS-KLMRKLAKPQKSKKKTVTVVYAGGKNKG----IAGRPRGVTGKYKMVD 830


>gi|328719508|ref|XP_003246781.1| PREDICTED: hypothetical protein LOC100162634 isoform 3 [Acyrthosiphon
            pisum]
          Length = 2050

 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 16/106 (15%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNV----------------VGRVEEIWEEYRKLQLIHAK 776
              L  +++ +  L + LK  + N+                   ++ +  +   LQ    K
Sbjct: 1907 RQLEEKEKHVAELDAKLKKRKENLDLLESQINKGKSQAGDSDVIKRLQSQIESLQKELEK 1966

Query: 777  RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             K + +       ++  V  M         K+++ + +AL+     
Sbjct: 1967 SKDEASRSQTDMERLLQVVQMGQEEQNAKEKQIRELQEALKNAQPK 2012


>gi|270296415|ref|ZP_06202615.1| DNA repair protein RecN [Bacteroides sp. D20]
 gi|270273819|gb|EFA19681.1| DNA repair protein RecN [Bacteroides sp. D20]
          Length = 556

 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQ 771
           +   G++R+  + G+ A   +     +LK ++  +   +  +     R++E+ E    + 
Sbjct: 249 NTMLGLQRVYPVAGELA-ERMESTYIELKDISQEVSGKEDEIEFNPERLDEVNERLNLIY 307

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +  K ++    E L+          +   S+   +ELK+  DAL  K++    +L
Sbjct: 308 TLQQKHRVSTVGELLALTDEYAAKLSAITSSDEHIEELKARCDALYNKVKKQAAVL 363


>gi|146423230|ref|XP_001487546.1| hypothetical protein PGUG_00923 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 811

 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 13/104 (12%)

Query: 723 IEAITGQRARS--HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           IEA      +    +     ++  +   L+    ++  R+E + E   +        K +
Sbjct: 425 IEASFNDAVQKGNEVEQTLREVSEVKEQLETKIASLASRIETLKESEEQKTKEILDLKRE 484

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  ++         N +  + S V SK     +  L+ ++ S +
Sbjct: 485 LGSKE---------NIIRELKSSVGSKL--ETVKGLKSELGSKV 517


>gi|91224404|ref|ZP_01259666.1| putative alanyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91190746|gb|EAS77013.1| putative alanyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 213

 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+     +    +V  DQT F+AE+GGQ  D G   G  + +          G+ + + +
Sbjct: 14  ELNSRVTNVDGNKVELDQTIFFAESGGQESDKGTINGIPVLIAQ------KLGVRLIYTL 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +   ID++ R  L   H A  ++           + + G+ I+ +  R 
Sbjct: 68  ESSPNFTLGDIVTTNIDWKRRYALMKLHFAAEVVLEMFYQRRE-GIVKIGAHISENKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   S+ I                   L  +   +       S   +    +     R  
Sbjct: 127 DFEWSESIGPL----------------LKEIETDVQDLINSDSVIISDFSDQ-ESERRYW 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            V+       +   CGGTH+  T E+  + +    +I  G  R+E
Sbjct: 170 RVDGF-----AQVPCGGTHLKRTSEVGQIQLKR-KNIGKGKERVE 208


>gi|296164|emb|CAA80271.1| 156 kDa Protein [Homo sapiens]
          Length = 1356

 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 22/148 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  +  +LK L + LK  + ++  +   ++++ +E +  +    + K Q   +  S    
Sbjct: 934  LKEKGNELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPH 993

Query: 792  AD-VNFMSHIISEVDS-----KELKSVM-------DALQKKIQSGIIMLVGISK--EKKA 836
             + +  +S    E+         LK  +       + L++K    +  L    K  + K 
Sbjct: 994  EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKV 1053

Query: 837  SVLIVVTEDLLDRFNAVDL-ARLSAKVL 863
            +     +++   +  AV+L A+   K L
Sbjct: 1054 N---KTSKERQQQVEAVELEAKEVLKKL 1078


>gi|28899083|ref|NP_798688.1| outer membrane protein OmpH [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807307|dbj|BAC60572.1| outer membrane protein OmpH [Vibrio parahaemolyticus RIMD 2210633]
          Length = 166

 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEI--------WEEYRKLQLIHAKRKLQLNVEDL 786
           L    +  KS A  LK  Q     ++E++         EE  KL++  AK   +  V+  
Sbjct: 46  LQKMQKDFKSKADELKSIQAQAKTKIEKLQRDGELLGQEEIEKLRIDIAKLDSEYKVKAQ 105

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +  K +              K ++  +  +  K    +++ +   +  K      ++ED+
Sbjct: 106 ALEKASARREAEEKAKLF--KTIQDAVKKVADKKGYDLVIDISALQYGKPEY--NISEDV 161

Query: 847 LDRFN 851
           +    
Sbjct: 162 IKALK 166


>gi|328719504|ref|XP_001948673.2| PREDICTED: hypothetical protein LOC100162634 isoform 1 [Acyrthosiphon
            pisum]
          Length = 2236

 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 16/106 (15%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNV----------------VGRVEEIWEEYRKLQLIHAK 776
              L  +++ +  L + LK  + N+                   ++ +  +   LQ    K
Sbjct: 1907 RQLEEKEKHVAELDAKLKKRKENLDLLESQINKGKSQAGDSDVIKRLQSQIESLQKELEK 1966

Query: 777  RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             K + +       ++  V  M         K+++ + +AL+     
Sbjct: 1967 SKDEASRSQTDMERLLQVVQMGQEEQNAKEKQIRELQEALKNAQPK 2012


>gi|296215096|ref|XP_002753977.1| PREDICTED: kinectin [Callithrix jacchus]
          Length = 1328

 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  ++ +LK + + LK  + ++  +   ++++ +E +  +    + K Q   +  S    
Sbjct: 906  LKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPH 965

Query: 792  AD-VNFMSHIISEVDS-----KELKSVM-------DALQKKIQSGIIMLVGISK--EKKA 836
             + +  +S    E+         LK  +       + L++K    +  L    K  + K 
Sbjct: 966  EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKV 1025

Query: 837  SVLIVVTEDLLDRFNAVDL-ARLSAKVL 863
            +     +++   +  AV+L A+   K L
Sbjct: 1026 N---KTSKERQQQVEAVELEAKDVLKKL 1050


>gi|209364558|ref|NP_001129227.1| centrosomal protein of 290 kDa [Rattus norvegicus]
          Length = 2479

 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            RI A+T Q+     +   + ++     LK    ++   + ++ E  +  +         L
Sbjct: 1763 RIIAVTSQK--EANLNVQQVVERHTKELKSQIEDLNENLLKLKEALKTSKNKENSLADDL 1820

Query: 782  NVEDLSCHKI-ADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            N  +    K     N +      +D  + EL+  +  L   +QS  ++      + K S+
Sbjct: 1821 NDLNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLI------DNKQSL 1874

Query: 839  LIVVTEDLLDRFN 851
            +    ++L  +  
Sbjct: 1875 I----DELQKKVK 1883


>gi|91223482|ref|ZP_01258747.1| outer membrane protein OmpH [Vibrio alginolyticus 12G01]
 gi|91191568|gb|EAS77832.1| outer membrane protein OmpH [Vibrio alginolyticus 12G01]
          Length = 190

 Score = 41.3 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEI--------WEEYRKLQLIHAKRKLQLNVEDL 786
           L    +  KS A  LK  Q     ++E++         +E  KL++  AK   +  V+  
Sbjct: 70  LQKMQKDFKSKADELKSIQAQAKTKIEKLQRDGELLGQDEVEKLRIDIAKLDSEYKVKAQ 129

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +  K +              K ++  +  +  K    +++ +   +  K      ++ED+
Sbjct: 130 ALEKASARREAEEKAKLF--KTIQDAVKKVADKNGYDLVIDISALQYGKPEY--NISEDV 185

Query: 847 LDRFN 851
           +    
Sbjct: 186 IKALK 190


>gi|324499709|gb|ADY39883.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1156

 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 15/113 (13%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI  L ++ + +I  G R        +A   +  Q   ++      K     ++ R++ +
Sbjct: 476 EIHRLKLIIDQTITDGER--------KALEQIEAQKRIIEE---EYKTHTAELMRRIDTL 524

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSV 812
            ++ R+L+      K +    ++       KI + + +   + E+    LK +
Sbjct: 525 QDDNRRLKGDLNTIKEKYRNLEIEYNTTLRKIDEKDLVIKRLEEIKGDLLKDL 577


>gi|171689204|ref|XP_001909542.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944564|emb|CAP70675.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1736

 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 26/66 (39%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            T + A + L   +EK+  L   L   +      V+ + +   +L+   ++ + Q+     
Sbjct: 1164 TSEEAAAQLAASEEKIAELEKELSTWEERHRSAVQALQDNEEQLKKTISELEAQVASFTA 1223

Query: 787  SCHKIA 792
               ++ 
Sbjct: 1224 KLSEVK 1229


>gi|47523830|ref|NP_999553.1| apolipoprotein A-IV precursor [Sus scrofa]
 gi|3913046|sp|O46409|APOA4_PIG RecName: Full=Apolipoprotein A-IV; Short=Apo-AIV; Short=ApoA-IV;
           AltName: Full=Apolipoprotein A4; Flags: Precursor
 gi|2695742|emb|CAA11020.1| apolipoprotein A-IV [Sus scrofa]
          Length = 382

 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++       ES +R  IR +EA     A       D+ ++ L   L      +  ++++ 
Sbjct: 156 QLKPYAERMESVLRQNIRNLEASVAPYADEFKAKIDQNVEELKGSLTPYAEELKAKIDQN 215

Query: 764 WEEYRK-----LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
            EE R+      Q +  K   QL        K A+   +   IS  ++ EL+ 
Sbjct: 216 VEELRRSLAPYAQDVQEKLNHQLEGLAFQMKKQAEE--LKAKIS-ANADELRQ 265


>gi|326923931|ref|XP_003208186.1| PREDICTED: STE20-like serine/threonine-protein kinase-like [Meleagris
            gallopavo]
          Length = 1350

 Score = 41.3 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              A+     Q+++L    + LK  +  V   VE+     ++L+    KRK +   +    
Sbjct: 1017 DEAKRIKAEQEKELSKFQNMLKNKKKEVFCEVEKAP---KELRKELLKRKKEELAQSQHA 1073

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             +     F+     E+D+  LK ++   + ++
Sbjct: 1074 QEQE---FVQKQQQELDA-SLKKIIQQQKTEL 1101


>gi|148689712|gb|EDL21659.1| mCG12157 [Mus musculus]
          Length = 2421

 Score = 41.3 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            RI A+T Q+     +   + ++     LK    ++   + ++ E  +  +         L
Sbjct: 1760 RIIAVTSQK--EANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDL 1817

Query: 782  NVEDLSCHKI-ADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            N  +    K     N +      +D  + EL+  +  L   +QS  ++      + K S+
Sbjct: 1818 NELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLI------DNKQSL 1871

Query: 839  LIVVTEDLLDRFN 851
            +    ++L  +  
Sbjct: 1872 I----DELQKKVK 1880


>gi|194766886|ref|XP_001965555.1| GF22554 [Drosophila ananassae]
 gi|190619546|gb|EDV35070.1| GF22554 [Drosophila ananassae]
          Length = 2609

 Score = 41.3 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 23/61 (37%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
              L  + +KL      L   +  +  +V+++ E+  KL     K   Q         KI+
Sbjct: 1169 EKLSEKQQKLSEQQEKLSEQEEKLSEKVQKLSEQETKLSEQEQKLSEQEQKLSQQEKKIS 1228

Query: 793  D 793
            +
Sbjct: 1229 E 1229


>gi|118595720|sp|Q6A078|CE290_MOUSE RecName: Full=Centrosomal protein of 290 kDa; Short=Cep290; AltName:
            Full=Bardet-Biedl syndrome 14 protein homolog; AltName:
            Full=Nephrocystin-6
          Length = 2472

 Score = 41.3 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            RI A+T Q+     +   + ++     LK    ++   + ++ E  +  +         L
Sbjct: 1756 RIIAVTSQK--EANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDL 1813

Query: 782  NVEDLSCHKI-ADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            N  +    K     N +      +D  + EL+  +  L   +QS  ++      + K S+
Sbjct: 1814 NELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLI------DNKQSL 1867

Query: 839  LIVVTEDLLDRFN 851
            +    ++L  +  
Sbjct: 1868 I----DELQKKVK 1876


>gi|313237156|emb|CBY12376.1| unnamed protein product [Oikopleura dioica]
          Length = 697

 Score = 41.3 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 92/355 (25%), Gaps = 41/355 (11%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y    G   D    +                  FV+  +  R        +    ++   
Sbjct: 8   YFPEEGTSSDVRRFLKRIDIPDGGVHIIGGPKGFVY--VRLRDREAPRKRVSSMANHYRS 65

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
               +NH    L       +  + V  N                      E +   D+  
Sbjct: 66  ANGKVNHLCADL----WENVDAAPVKPNYFSGNKKEDHDQEGDFDQEREPEQEINIDSQC 121

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            +++     VT+     + +        G     +    +      G           V 
Sbjct: 122 VMLSGVASDVTKKDLVHELLKECRITKYGLYMETQENKCT------GKCYIEF-----VD 170

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK--------SLASFLKVS 752
            T     +    +S  R     +EAIT    +S +    + LK           +  K  
Sbjct: 171 QTTRDRAIQKAHKSEFRGNTVTLEAITATDMKSRVQQHRKDLKMMEYNHRKEAKAKTKKR 230

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
           + ++  R + + EE ++ + +  +   +L                    +    K+ K  
Sbjct: 231 KEDISEREKSVKEELKERERLKQEMLKELEKTSTK-----------QSYNSKSPKKTKKH 279

Query: 813 MDALQKKIQSGIIML-----VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
               +K   S  I+         S E +    +   + +  + N+    R  AK+
Sbjct: 280 ASPSKKAASSTAIVSPSPKNTSTSSEDEGLSALFAPKGIAPKINSSTAIRPVAKI 334


>gi|291535555|emb|CBL08667.1| Predicted permease [Roseburia intestinalis M50/1]
          Length = 1034

 Score = 41.3 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 54/171 (31%), Gaps = 29/171 (16%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-KLQLNVEDLS 787
           + A+S +   +++L      L+ +   +  +  E+ E  + +Q    +  + ++ +    
Sbjct: 282 EDAKSQIEDGEKQLADAKKKLEYAPDELEKKEAELTEAEKAIQEKETQLDQAEVALGIGY 341

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
              +  +            K L  + + L  +            +   A+      + L 
Sbjct: 342 AQGVGQIQ-----------KALNGISEGLFSENG---------DQGNGAAGSFSSGDALA 381

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           D   A      +   +      GR  +A++          AIA     L++
Sbjct: 382 D---AGSQIADAKAQIAD----GRAQIAEAK-KQIESGKSAIAKAKKQLEE 424


>gi|222475473|ref|YP_002563890.1| major surface protein 3 (MSP3) [Anaplasma marginale str. Florida]
 gi|222419611|gb|ACM49634.1| major surface protein 3 (MSP3) [Anaplasma marginale str. Florida]
          Length = 867

 Score = 41.3 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 52/138 (37%), Gaps = 38/138 (27%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQ 780
           E + G+RA   L      LK L    K+   ++  ++E + E  ++++ I+ +    KL+
Sbjct: 504 ELVPGKRA-QTLGEMKATLKELEKIRKL--VDLEKKLETMGELKKEIEKINEEGELLKLE 560

Query: 781 LNVEDLSCHKI-----------------------ADVNFMSH---IISEVDSKE------ 808
             +++ +  +I                        +V  +      ++ ++         
Sbjct: 561 AKIQEEAKAEITTLKSAERYGTLKENLKELEKKLGEVKSLGALKWQVAGIEPGTGSQGGK 620

Query: 809 LKSVMDALQKKIQSGIIM 826
           ++ + D L+ K+   + +
Sbjct: 621 IQKLADKLKNKLGELVAI 638


>gi|163965444|ref|NP_666121.2| centrosomal protein of 290 kDa [Mus musculus]
          Length = 2479

 Score = 41.3 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            RI A+T Q+     +   + ++     LK    ++   + ++ E  +  +         L
Sbjct: 1763 RIIAVTSQK--EANLNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKENSLADDL 1820

Query: 782  NVEDLSCHKI-ADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            N  +    K     N +      +D  + EL+  +  L   +QS  ++      + K S+
Sbjct: 1821 NELNNELQKKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLI------DNKQSL 1874

Query: 839  LIVVTEDLLDRFN 851
            +    ++L  +  
Sbjct: 1875 I----DELQKKVK 1883


>gi|67524045|ref|XP_660084.1| hypothetical protein AN2480.2 [Aspergillus nidulans FGSC A4]
 gi|40744642|gb|EAA63798.1| hypothetical protein AN2480.2 [Aspergillus nidulans FGSC A4]
 gi|259487901|tpe|CBF86940.1| TPA: vesicle-mediated transport protein (Imh1), putative
           (AFU_orthologue; AFUA_4G02990) [Aspergillus nidulans
           FGSC A4]
          Length = 1153

 Score = 41.3 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 738 QDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +  ++  + S L+ S+  V      VE++  E ++      + + Q +  + +  +    
Sbjct: 344 KQSEIDEIKSKLEASETAVAETNAEVEKLSAELKQKAAEIEQLQAQASKPEDADQQAELA 403

Query: 795 NFMSHIISEVDSKE-----LKSVMDALQKKIQSG 823
             +  +  E ++ E     L+ ++D L+ +++  
Sbjct: 404 IKLEQVKQEKEANEKRLGVLQGLVDTLRTQLKET 437


>gi|260798845|ref|XP_002594410.1| hypothetical protein BRAFLDRAFT_159044 [Branchiostoma floridae]
 gi|229279644|gb|EEN50421.1| hypothetical protein BRAFLDRAFT_159044 [Branchiostoma floridae]
          Length = 200

 Score = 41.3 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 59/130 (45%), Gaps = 14/130 (10%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRV 760
           ++    + +E       + IEAIT +     L  ++++ + +   L+     V      V
Sbjct: 42  QMESKKMKAEQECDEMKKEIEAITLK-----LNKREKEKQEVEDKLRAMTEEVAVNDELV 96

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF-MSHIISEVD-----SKELKSVMD 814
            ++  E +KL+ ++A+    L  E+     +  +   +   + +++      K++++ +D
Sbjct: 97  GKLGREKKKLEELNAQTLDDLQSEEDKTQNLTKLKVKLEQTLDDLEDNLEHDKKIRADVD 156

Query: 815 ALQKKIQSGI 824
            +++K+++ +
Sbjct: 157 RVKRKLENDL 166


>gi|170052208|ref|XP_001862117.1| nuclear lamin L1 alpha [Culex quinquefasciatus]
 gi|167873142|gb|EDS36525.1| nuclear lamin L1 alpha [Culex quinquefasciatus]
          Length = 726

 Score = 41.3 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 18/126 (14%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS---LASFLKVSQGN 755
           +   G++       E    + I R+E    + AR  +   D+ L+        L+   G 
Sbjct: 4   LEEIGDMSNFDAWLEKDFLSKISRLETEC-EDAREKIKTLDKDLRKKTIECDILRAKVGK 62

Query: 756 VV----------GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           +            ++E + +E ++  +     + +L+  +         N +   + +++
Sbjct: 63  LETVPSNNAASNEKIENLEKELKRKTMELDILRSKLSNSETKTE---GSNDLVERVKQLE 119

Query: 806 SKELKS 811
            KELK 
Sbjct: 120 -KELKK 124


>gi|66396355|ref|YP_240675.1| ORF023 [Staphylococcus phage 88]
 gi|66396430|ref|YP_240748.1| ORF024 [Staphylococcus phage 92]
 gi|304379025|ref|ZP_07361774.1| phage minor structural protein GP20 [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|62636770|gb|AAX91881.1| ORF023 [Staphylococcus phage 88]
 gi|62636844|gb|AAX91955.1| ORF024 [Staphylococcus phage 92]
 gi|304342401|gb|EFM08291.1| phage minor structural protein GP20 [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
          Length = 198

 Score = 41.3 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +  +  +  +DE++  L   +K     +   +EE+  +  +L+  + + +L   V+    
Sbjct: 45  EELKEEISKRDEQIVKLQDSVK-DDSEIQKELEELKNQNSELETKYKETQLNNAVKLAVA 103

Query: 789 HKIADVNFMSHIISE-----VDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            +  D N +   I++     VD   +K + +A++   +S   +        K
Sbjct: 104 KEANDANDILAFINKDELELVDDGTVKGLDEAIKTLKESKPYLFASSKPVGK 155


>gi|145505543|ref|XP_001438738.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405910|emb|CAK71341.1| unnamed protein product [Paramecium tetraurelia]
          Length = 281

 Score = 41.3 bits (95), Expect = 0.85,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 18/224 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT--- 567
           ++++  +  F+ + GGQ  D G    +   + +  +Q       V   +  +  L     
Sbjct: 57  IQLLLKENIFHPQGGGQPDDEGQIKINDNLINVMSLQNDKAKQQVLLNLQHQQQLFDLLI 116

Query: 568 -----EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                  +++  ++ Q RR  +  HSA H +   +  +        G    PDG   + T
Sbjct: 117 EAKQQNQAVIQIVNEQQRRNYARLHSAGHFIDMVVKKLGLKWTGAKGYH-FPDGAYVEYT 175

Query: 623 -----HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
                  + I  +  ++ +  +N+    +   V  +   + +   G       K    VR
Sbjct: 176 GTLEGKPEDIQVSIQQTCDQLLNETEENDSKQVEFLNEEQLSQRLGGEVPHYFKGAQNVR 235

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            + +   D G      CGGTHV+   E++ + IV        +R
Sbjct: 236 YIKLCKYDDG----CPCGGTHVNHVKELIKVNIVKIQKKGKFLR 275


>gi|304316102|ref|YP_003851247.1| cell division protein FtsA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777604|gb|ADL68163.1| cell division protein FtsA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 583

 Score = 41.3 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS-VMDALQKKIQSG-IIML 827
           L+     +KL          K+   N + +      +K LK+ ++  L+ K+++G  I++
Sbjct: 410 LKTNFDSKKLIARPGKNLSFKLNGKNIVINGEVGTPAKILKNGIVSNLKSKVENGDKIVV 469

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL 855
           V     K AS+ I   +DL D+++A  +
Sbjct: 470 VSGINGKDASITI---KDLKDKYSASKI 494


>gi|332027329|gb|EGI67413.1| CAP-Gly domain-containing linker protein 1 [Acromyrmex echinatior]
          Length = 1584

 Score = 41.3 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK- 790
              +  + +  + LAS +  S+     R+ ++ EE +      A+ +     +     K 
Sbjct: 699 VRIIHEKQKLEQDLASLI-ASEEESAVRLNKLNEELKVKDKEIAELRNATVAQIEEITKR 757

Query: 791 ----IAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
               I D V ++  I ++V  K +  ++  L+K I     ++    +E K
Sbjct: 758 FEAQINDKVKYIDEINADVSQKAM--MLVKLEKDIADLKAIIASKDEEIK 805


>gi|308126535|ref|ZP_05910767.2| chaperone protein Skp [Vibrio parahaemolyticus AQ4037]
 gi|308110180|gb|EFO47720.1| chaperone protein Skp [Vibrio parahaemolyticus AQ4037]
          Length = 190

 Score = 41.3 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEI--------WEEYRKLQLIHAKRKLQLNVEDL 786
           L    +  KS A  LK  Q     ++E++         EE  KL++  AK   +  V+  
Sbjct: 70  LQKMQKDFKSKADELKSIQAQAKTKIEKLQRDGELLGQEEIEKLRIDIAKLDSEYKVKAQ 129

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +  K +              K ++  +  +  K    +++ +   +  K      ++ED+
Sbjct: 130 ALEKASARREAEEKAKLF--KTIQDAVKKVADKKGYDLVIDISALQYGKPEY--NISEDV 185

Query: 847 LDRFN 851
           +    
Sbjct: 186 IKALK 190


>gi|301761672|ref|XP_002916272.1| PREDICTED: homer protein homolog 1-like [Ailuropoda melanoleuca]
          Length = 384

 Score = 40.9 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 76/226 (33%), Gaps = 27/226 (11%)

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
           +        +     +++N    +  P VT+           A     +     +    +
Sbjct: 158 SQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPTQNALPFSHSSAISKHWEAEL 217

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLM 736
            +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     +H  
Sbjct: 218 ATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHTHKT 277

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-- 794
             ++ ++ L   LKV +  +  R+++  +  R+LQ        +L   ++    +     
Sbjct: 278 ELNQTIQELEETLKVKEEEI-ERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLEGQLS 336

Query: 795 -----------------NFMSHIISEVDSK--ELKSVMDALQKKIQ 821
                            N +  ++  +D K  EL  + D L K ++
Sbjct: 337 DLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLAKLLE 382


>gi|20094208|ref|NP_614055.1| hypothetical protein MK0771 [Methanopyrus kandleri AV19]
 gi|19887233|gb|AAM01985.1| Uncharacterized protein [Methanopyrus kandleri AV19]
          Length = 609

 Score = 40.9 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 44/114 (38%), Gaps = 21/114 (18%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ----------------- 771
           ++A  +   + EK+    + LK    ++  +   + E  +KL+                 
Sbjct: 176 EKAEEY-RERYEKIAGKYNELKSKLEDLSDQNRRLAENLKKLKEKYNEIKEERDRLKEET 234

Query: 772 LIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEV--DSKELKSVMDALQKKIQS 822
               K K QL        ++      +++ +  +  ++++L+  +D L+ ++ +
Sbjct: 235 KEVGKLKDQLAKLQSKLKEVKSERDDLANEVEALRNENEKLRKKIDKLKSELSN 288



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           L  Q  KL+S    +K  + ++   VE +  E  KL+    K K +L+        
Sbjct: 240 LKDQLAKLQSKLKEVKSERDDLANEVEALRNENEKLRKKIDKLKSELSNLQKKLKD 295


>gi|261325154|ref|ZP_05964351.1| threonyl/alanyl tRNA synthetase SAD [Brucella neotomae 5K33]
 gi|261301134|gb|EEY04631.1| threonyl/alanyl tRNA synthetase SAD [Brucella neotomae 5K33]
          Length = 144

 Score = 40.9 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 10/147 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+A HLL       +       G+ +  D  R D        S   +S+ + + +++
Sbjct: 1   MRMHTACHLLS------VACPFPITGAAVGEDESRVDFDLPDQ--SYTKESVTEKLMELV 52

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGT--KYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
             N PV    ++ E+ +A+                R+  V   + G   S  CGGTHVS 
Sbjct: 53  QANAPVSIHWISDEEFLANPDIVKSKNVRPPVGLGRIRLVAIGENGSVDSQPCGGTHVSE 112

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITG 728
           T E+  ++I          RR     G
Sbjct: 113 TQEVGEIHIGKIEKKGKENRRFRIRFG 139


>gi|256546107|ref|ZP_05473460.1| LPXTG anchored putative adhesin [Anaerococcus vaginalis ATCC 51170]
 gi|256398224|gb|EEU11848.1| LPXTG anchored putative adhesin [Anaerococcus vaginalis ATCC 51170]
          Length = 938

 Score = 40.9 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 733 SHLMGQDEKLKS---LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
             L  +++ LK    L++ L      +   ++++  + ++L+   A+ +  L   D    
Sbjct: 66  EKLKEKEDLLKEKSELSNKLSKKNDKLAKEIDDLKNKIKELEDKEAENQKNLKSFDEKLA 125

Query: 790 KIADVN 795
           K  +  
Sbjct: 126 KANEEK 131


>gi|308465554|ref|XP_003095036.1| hypothetical protein CRE_24183 [Caenorhabditis remanei]
 gi|308246226|gb|EFO90178.1| hypothetical protein CRE_24183 [Caenorhabditis remanei]
          Length = 119

 Score = 40.9 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 36/79 (45%), Gaps = 13/79 (16%)

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
            L+   K    +++ ++++  +  ++L+      KL+  ++ L   K+           +
Sbjct: 50  ELSEKFKEQLNDLLEKIKDAVDNGKELKEEIL-VKLKEALKQLKDMKV-----------D 97

Query: 804 VDSKELKSVMDALQKKIQS 822
           + +K  + +++ ++ K+ S
Sbjct: 98  IGNKA-RELIEEIKGKLGS 115


>gi|294497585|ref|YP_003561285.1| efflux transporter, RND family, MFP subunit [Bacillus megaterium QM
           B1551]
 gi|294347522|gb|ADE67851.1| efflux transporter, RND family, MFP subunit [Bacillus megaterium QM
           B1551]
          Length = 376

 Score = 40.9 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 67/189 (35%), Gaps = 36/189 (19%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           GE+   ++   S ++ G   +   +   A      Q+   K  +        +V  ++  
Sbjct: 70  GEVERFHVTEGSRVQQGTSLVTYES--DALDLEQEQNNLEKKSSQL---QIDSVSKQLSN 124

Query: 763 IWEEYRKLQLIHAKRKLQLNVE--------DLSCHKIA------DVNFMSHIISEVD-SK 807
           + ++ ++L+   +K++ +  ++        DL   KI       +   ++     +D + 
Sbjct: 125 LNKKQKELEKEMSKQEARDQIDTERTQLNLDLETAKIDLERNKLEAKSIAKKERNLDVAS 184

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD----------RFNAVDLAR 857
           ++   +  + K+       +   S  +K  + I  T++ L           +       +
Sbjct: 185 DINGTVLEVDKE------AVNNTSDVQKPLIHIGNTDEYLATGVLSEYDALKIKTGQAVK 238

Query: 858 LSAKVLGGG 866
           +++ VL   
Sbjct: 239 ITSDVLPDK 247


>gi|297527186|ref|YP_003669210.1| hypothetical protein Shell_1212 [Staphylothermus hellenicus DSM
           12710]
 gi|297256102|gb|ADI32311.1| hypothetical protein Shell_1212 [Staphylothermus hellenicus DSM
           12710]
          Length = 305

 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGN 755
             +    +  +L +  E+ I   I+R+E +  +         +  ++++  + LK+    
Sbjct: 126 ERLEWIQQTRILNVEEENQIIKKIQRLEELLDKALQIKKEKNKYLEIRATITSLKLQINE 185

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +  ++  I E    L+      + Q+   +     I +   ++     V++  L   ++ 
Sbjct: 186 LKDKISNISENINNLKEKIRSLRQQIEELNKQVEDINEE--ITQKQERVNN--LSKQIND 241

Query: 816 LQKKIQS 822
           L +K+ +
Sbjct: 242 LIEKLNN 248


>gi|123421285|ref|XP_001305956.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121887504|gb|EAX93026.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2271

 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFL--KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           +  +  +   + +   L   L  KV   +++ ++ +  +E          +K   N   L
Sbjct: 831 KELKKQIGDLNRENNDLKEQLDDKVKNDDIIEKLRKQIDELNAKIQELQSQKPVDNSSAL 890

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
              KI ++      + E ++K LK   D L  K + 
Sbjct: 891 E-EKINELQKAKQELEETENK-LKDTTDELMAKDKE 924



 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 733 SHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN----VED 785
           + L   + ++K L   L   + S+ ++  ++ ++ ++  +LQ    +           + 
Sbjct: 60  NQLDDANSRIKELEDELTESETSKDDLSNKLNDLQKKLNELQKKANQLDQAKKDLADSQQ 119

Query: 786 LSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQS 822
            +  K  +V+ +   + ++  + K+L+   D L+K  + 
Sbjct: 120 ENTEKQKEVDDLKTQLRDLEKEMKQLQKKNDDLEKANKD 158


>gi|21260574|gb|AAM43800.1| 17 kDa Antigen [Bartonella quintana]
 gi|37545469|gb|AAM82238.1| 17kDa antigen-like protein [Bartonella quintana str. Toulouse]
          Length = 160

 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 19/114 (16%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--------------LQLIH 774
           +RA  +    D      A  +  S   +  +++EI E+ RK              LQ+  
Sbjct: 43  KRALENTQKLDAAKSETAESIYASANEITNKIKEINEKLRKAQAAEKTKPEEFQALQIEL 102

Query: 775 AKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  + QL  + L        +  +      I  E   K+ K + + L++K+ + 
Sbjct: 103 SLLQAQLQADTLKIQFLSMIQAKNTKTKEDIREEQTQKKHKDLQEKLKEKLGNS 156


>gi|28376355|gb|AAO41090.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 870

 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 21/140 (15%)

Query: 737 GQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             DE    L S L + +   +     V++  E  ++L+    + +L          K+ +
Sbjct: 306 NADEIEGELKSALGLERLEKLAELELVKQRLESMKELEKKIEEAQLTAEELREMREKLKE 365

Query: 794 VNFMSHIISEVDSKELKSV-----MDALQKKIQSGIIMLVGISKEKKASVL--IV-VTED 845
           +          D   LK        D L+K ++     ++   + KK+ ++  +  + + 
Sbjct: 366 LAGR-----GEDPAGLKKAIEEANADELKKGLKE----VLKTLEGKKSELVREVGRLKKG 416

Query: 846 LLDRFNAVD-LARLSAKVLG 864
            L+   A   L       LG
Sbjct: 417 ALEEMKAGKGLVEEVKGELG 436


>gi|42569537|ref|NP_180749.2| XIF; motor [Arabidopsis thaliana]
 gi|330253507|gb|AEC08601.1| myosin-like protein XIF [Arabidopsis thaliana]
          Length = 1556

 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 78/248 (31%), Gaps = 25/248 (10%)

Query: 629  SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR---VVSVEYED 685
              E  SI    N    +     T++      I +G   +     +   R      +   +
Sbjct: 781  RREAASICIQKNIRAHRARKNYTKLQASATVIQTGLRTMSARNKHRHRRRTKAAIIIQRE 840

Query: 686  GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               H        H  +T  +  L+    +       R+ A      +      +++++ L
Sbjct: 841  WRRHQVHEAYKKHKKATLALQCLWRAKVARKELKNLRMAARETGALKEAKDKLEKRVEEL 900

Query: 746  ASFL---KVSQGNVVGR----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIADVNFM 797
               L   K  + ++       + ++     +LQ    +    +  +  +    I     +
Sbjct: 901  TWRLELEKNQKADLEDAKAQEIAKLQNNLTELQEKLDEAYAAIIRDKEAAKLAIEQAPPI 960

Query: 798  SHIISEVDSKELKSV----------MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
               +  VD+ +L+ +          +  L+ KI+   +    +  + +AS    VTE   
Sbjct: 961  IKEVPVVDNTQLELLNSQNNELEVEVAKLKGKIKEFEVKCFALENDSRAS----VTEAED 1016

Query: 848  DRFNAVDL 855
             +  AV+ 
Sbjct: 1017 AKSKAVEF 1024


>gi|309359375|emb|CAP33058.2| CBR-LFI-1 protein [Caenorhabditis briggsae AF16]
          Length = 2488

 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           T   AR      DE   S+    K     +  R+E +  E  +L+      K +    + 
Sbjct: 751 TTDDARKLRDEMDEHTNSIQEEFKTRIDELNRRIENLLRENNRLKSEVNPLKDKYRDLE- 809

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
                 + N     I E ++ +L+   D ++K IQ  +
Sbjct: 810 -----NEYNSTQRRIEERET-QLR-YADDIRKNIQKDL 840


>gi|294677983|ref|YP_003578598.1| threonyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
 gi|294476803|gb|ADE86191.1| threonyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
          Length = 648

 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 64/174 (36%), Gaps = 17/174 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H   H++  A+  I    V      +   G  +D   ++P T  +L  IE  +  II   
Sbjct: 76  HDLAHIMARAVQEI-WPDVKVTIGPVRDAGWFYDFDRAEPFTPEDLGQIEARMKQIINAR 134

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED----GGVHSSALCGGTHVSST 702
            PV T + +REDAIA    +     Y   +     E ED       +   LC G H+  T
Sbjct: 135 EPVRTEVWSREDAIAHYEKS--NEPYKVELVNRIPEGEDLRMYWHGNWQDLCRGPHLQHT 192

Query: 703 GEIM-----LLYIVSESSIRAGIR----RIEAITGQRARSHLMGQDEKLKSLAS 747
           G++      L ++     +    R    RI  I   R R  L      L+  A 
Sbjct: 193 GQVPADAFKLTHVAGAYWLGDSTRPMLQRIYGIA-FRTRDDLKAHMTMLEEAAK 245


>gi|262393528|ref|YP_003285382.1| outer membrane chaperone Skp [Vibrio sp. Ex25]
 gi|262337122|gb|ACY50917.1| outer membrane chaperone Skp (OmpH) precursor [Vibrio sp. Ex25]
          Length = 169

 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEI--------WEEYRKLQLIHAKRKLQLNVEDL 786
           L    +  KS A  LK  Q     ++E++         +E  KL++  AK   +  V+  
Sbjct: 49  LQKMQKDFKSKADELKSIQAQAKTKIEKLQRDGELLGQDEVEKLRIDIAKLDSEYKVKAQ 108

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +  K +              K ++  +  +  K    +++ +   +  K      ++ED+
Sbjct: 109 ALEKASARREAEEKAKLF--KTIQDAVKKVADKNGYDLVIDISALQYGKPEY--NISEDV 164

Query: 847 LDRFN 851
           +    
Sbjct: 165 IKALK 169


>gi|149726525|ref|XP_001504698.1| PREDICTED: similar to Homer protein homolog 1 [Equus caballus]
          Length = 354

 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 75/226 (33%), Gaps = 27/226 (11%)

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
           +        +     +++N    +  P VT+           A     +     +    +
Sbjct: 128 SQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPTQNALPFSHSSAISKHWEAEL 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLM 736
            +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     +H  
Sbjct: 188 ATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHTHKS 247

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-- 794
             ++ ++ L   LKV +  +  R++   +  R+LQ        +L   ++    +     
Sbjct: 248 ELNQTIQELEETLKVKEEEI-ERLKREIDNARELQEQRDSLTQKLQEVEIRNKDLEGQLS 306

Query: 795 -----------------NFMSHIISEVDSK--ELKSVMDALQKKIQ 821
                            N +  ++  +D K  EL  + D L K ++
Sbjct: 307 DLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLAKLLE 352


>gi|145487594|ref|XP_001429802.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396896|emb|CAK62404.1| unnamed protein product [Paramecium tetraurelia]
          Length = 168

 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG--RVEEIWEEYRKLQLIHAKRKLQ 780
           I   TG   +  +    ++ ++L   ++  +  +     +E I E+ ++LQ    K + +
Sbjct: 91  ILFKTGYEQQQEIKKLTQENQNLKELVRKQEDQLKQFFELENILEQNKQLQEKIEKLEQE 150

Query: 781 LNVEDLSCHKIADVN 795
             +   +  ++    
Sbjct: 151 NYILRQAQEQVNKSK 165


>gi|4887746|gb|AAD32282.1| putative unconventional myosin [Arabidopsis thaliana]
          Length = 1490

 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 78/248 (31%), Gaps = 25/248 (10%)

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR---VVSVEYED 685
             E  SI    N    +     T++      I +G   +     +   R      +   +
Sbjct: 715 RREAASICIQKNIRAHRARKNYTKLQASATVIQTGLRTMSARNKHRHRRRTKAAIIIQRE 774

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
              H        H  +T  +  L+    +       R+ A      +      +++++ L
Sbjct: 775 WRRHQVHEAYKKHKKATLALQCLWRAKVARKELKNLRMAARETGALKEAKDKLEKRVEEL 834

Query: 746 ASFL---KVSQGNVVGR----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIADVNFM 797
              L   K  + ++       + ++     +LQ    +    +  +  +    I     +
Sbjct: 835 TWRLELEKNQKADLEDAKAQEIAKLQNNLTELQEKLDEAYAAIIRDKEAAKLAIEQAPPI 894

Query: 798 SHIISEVDSKELKSV----------MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
              +  VD+ +L+ +          +  L+ KI+   +    +  + +AS    VTE   
Sbjct: 895 IKEVPVVDNTQLELLNSQNNELEVEVAKLKGKIKEFEVKCFALENDSRAS----VTEAED 950

Query: 848 DRFNAVDL 855
            +  AV+ 
Sbjct: 951 AKSKAVEF 958


>gi|302507420|ref|XP_003015671.1| hypothetical protein ARB_05982 [Arthroderma benhamiae CBS 112371]
 gi|291179239|gb|EFE35026.1| hypothetical protein ARB_05982 [Arthroderma benhamiae CBS 112371]
          Length = 1151

 Score = 40.9 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            +L  + E L+     L         +V+E+  E   L+   A+ + +++   LS  + +
Sbjct: 600 ENLREEIETLQDEVVSLGQDHVEAKDKVKELLAEKSALEKRAAEFEKEISSLRLSSTQSS 659

Query: 793 DV----NFMSHIISEVDSKEL 809
           D       +S    ++ SK L
Sbjct: 660 DAEKAHKGLSVEFEDLKSKAL 680


>gi|16331851|ref|NP_442579.1| hypothetical protein slr0111 [Synechocystis sp. PCC 6803]
 gi|1208481|dbj|BAA10649.1| slr0111 [Synechocystis sp. PCC 6803]
          Length = 173

 Score = 40.9 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI- 791
           + L     +L S+ + L+  +       E++ +E +  +    + +  L  E     ++ 
Sbjct: 43  ADLAELQAQLNSIKAALQAEKNQGEKLKEQLQQEKKAQEK-VKQLEQSLKQEQARVKELQ 101

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +V  +  + +E+  KE K+++  L  KIQ 
Sbjct: 102 NEVQLVEKLQTEL--KEEKNLVGKLYSKIQD 130


>gi|323342564|ref|ZP_08082796.1| hypothetical protein HMPREF0357_10977 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463676|gb|EFY08870.1| hypothetical protein HMPREF0357_10977 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 1714

 Score = 40.9 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              ++ +K +     V +     ++E I +E   ++ +    K + +  D       +++
Sbjct: 370 KKANDAIKEIEDLKNVPESEKQEKIEAIQKELENVKKVIDDAKTREDATDAKDTSSGNID 429

Query: 796 FMSHIISEVDSK-----ELKSVMDALQKKIQSGIIMLVGISKEKK 835
            +   +S VD K     EL    +  +K+I      L  +++++K
Sbjct: 430 KIISDVSLVDRKNESKSELDKKAEDAKKEID----ALPNLTEDEK 470


>gi|302655714|ref|XP_003019642.1| hypothetical protein TRV_06360 [Trichophyton verrucosum HKI 0517]
 gi|291183377|gb|EFE38997.1| hypothetical protein TRV_06360 [Trichophyton verrucosum HKI 0517]
          Length = 1150

 Score = 40.9 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            +L  + E L+     L         +V+E+  E   L+   A+ + +++   LS  + +
Sbjct: 599 ENLREEIETLQDEVVSLGQDHVEAKDKVKELLAEKSALEKRAAEFEKEISSLRLSSTQSS 658

Query: 793 DV----NFMSHIISEVDSKEL 809
           D       +S    ++ SK L
Sbjct: 659 DAEKAHKGLSVEFEDLKSKAL 679


>gi|553596|gb|AAA59888.1| cellular myosin heavy chain [Homo sapiens]
          Length = 1337

 Score = 40.9 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 1070 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNK 1129

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +VN +   + E ++K  ++ + 
Sbjct: 1130 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQ 1188

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGGG 868
             +++K    +  L    ++ K        +  L++          +LA    KVL  G G
Sbjct: 1189 EMRQKHSQAVEELAEQLEQTKRV------KANLEKAKQTLENERGELANEV-KVLLQGKG 1241


>gi|260914711|ref|ZP_05921176.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
 gi|260631215|gb|EEX49401.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
          Length = 409

 Score = 40.9 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVED 785
           Q+ +SHL  Q+ ++  + + L+ ++ ++      + E  ++ ++L+    ++K +L  + 
Sbjct: 55  QKLQSHLKNQENQINQVLTQLRQTETDLKESRKIISETEKQIKRLEKQEREQKQKLAKQL 114

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            S ++      +   I   D+K      D L++
Sbjct: 115 DSAYRSGANPSVMERILSEDAKN----ADRLKQ 143


>gi|152990534|ref|YP_001356256.1| methyl-accepting chemotaxis protein [Nitratiruptor sp. SB155-2]
 gi|151422395|dbj|BAF69899.1| methyl-accepting chemotaxis protein [Nitratiruptor sp. SB155-2]
          Length = 665

 Score = 40.9 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 56/171 (32%), Gaps = 32/171 (18%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             + A        ++  S+A+ L  +   +  RVE+      + Q++        +++  
Sbjct: 382 ASKEAIDRAKKATQENASIAAELNSTVMEIGKRVED------EAQIVANTTGKASSIQKP 435

Query: 787 SCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
               + ++      +   + K  + K  ++ L   +++          EKK         
Sbjct: 436 LAESVENLENSQEELQNANKKLEDAKESIENLLDTLKN------SAENEKKVV------A 483

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMA-QSGGPNGNKADQAIAGVAS 894
           +L    NA D A+    ++          +A Q    N    + AI    +
Sbjct: 484 ELHALVNATDEAKEVLNLIE--------DIASQ---TNLLALNAAIEAARA 523


>gi|153839490|ref|ZP_01992157.1| chaperone protein skp [Vibrio parahaemolyticus AQ3810]
 gi|260876835|ref|ZP_05889190.1| chaperone protein Skp [Vibrio parahaemolyticus AN-5034]
 gi|308095416|ref|ZP_05905763.2| chaperone protein Skp [Vibrio parahaemolyticus Peru-466]
 gi|308125449|ref|ZP_05775353.2| chaperone protein Skp [Vibrio parahaemolyticus K5030]
 gi|149746995|gb|EDM57983.1| chaperone protein skp [Vibrio parahaemolyticus AQ3810]
 gi|308085353|gb|EFO35048.1| chaperone protein Skp [Vibrio parahaemolyticus Peru-466]
 gi|308091513|gb|EFO41208.1| chaperone protein Skp [Vibrio parahaemolyticus AN-5034]
 gi|308113979|gb|EFO51519.1| chaperone protein Skp [Vibrio parahaemolyticus K5030]
 gi|328474380|gb|EGF45185.1| chaperone protein skp [Vibrio parahaemolyticus 10329]
          Length = 169

 Score = 40.9 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEI--------WEEYRKLQLIHAKRKLQLNVEDL 786
           L    +  KS A  LK  Q     ++E++         EE  KL++  AK   +  V+  
Sbjct: 49  LQKMQKDFKSKADELKSIQAQAKTKIEKLQRDGELLGQEEIEKLRIDIAKLDSEYKVKAQ 108

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +  K +              K ++  +  +  K    +++ +   +  K      ++ED+
Sbjct: 109 ALEKASARREAEEKAKLF--KTIQDAVKKVADKKGYDLVIDISALQYGKPEY--NISEDV 164

Query: 847 LDRFN 851
           +    
Sbjct: 165 IKALK 169


>gi|298204586|emb|CBI23861.3| unnamed protein product [Vitis vinifera]
          Length = 83

 Score = 40.9 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 273 RVIVDHLRSSSFLIADGIL--PANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPAL 329
           ++  ++       I D +     NEGR YVLR I+RRA+ Y    L   E     LL  +
Sbjct: 4   KIFKEYGHLIKGSIHDYLTYSIDNEGREYVLRHILRRAVRYGSEVLKAQEGFFNSLLNIV 63

Query: 330 CTEMGSAYPELIQAKLLI 347
              MG  +PEL Q ++ I
Sbjct: 64  VKVMGDVFPELKQYEVHI 81


>gi|315224378|ref|ZP_07866211.1| exopolyphosphatase [Capnocytophaga ochracea F0287]
 gi|314945654|gb|EFS97670.1| exopolyphosphatase [Capnocytophaga ochracea F0287]
          Length = 975

 Score = 40.9 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 51/419 (12%), Positives = 125/419 (29%), Gaps = 45/419 (10%)

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           +QF+G D     +  KE  K+       +     +  ++ + +  E   +        + 
Sbjct: 593 SQFLGTDKKSAEQLTKEFYKIASSFRISNGDEYTTVNIEGLQENFEAAVKLYEDFIANIK 652

Query: 515 FDQTPFYAEAGGQLG---DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            D+    A     +    D        ++         A+  + +          T   L
Sbjct: 653 VDEEALKALKARVVKSRIDAKANRNAIMQALTNYAMYGAKNKYNYTFSDAEIEAITGKEL 712

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           V  +   N  + ++ +     L    + +   H             +     +K     E
Sbjct: 713 VEKLKNLNNVEQTVIYYGPATLSELTNKLKTLH-------------KVPAKFAKVAPKKE 759

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            K +E   N ++  +       M + +         +     +   + +     GG   S
Sbjct: 760 FKQVEQTKNQVLFADY-----EMVQAET--RWIRNTVPFNPAESTVISTFNNYFGGGMGS 812

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            +      S           +    +A    + A  G +A        E ++++   L  
Sbjct: 813 LVFQTIRESKALAYSTYGFYASPRKKADKYYMLAYVGSQADKF----KEAVEAMNELLNT 868

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-LSCHKIA---DV-NFMSHIISEVDS 806
               +   ++    + ++ ++   +      +   L+  ++    D+   +   +  +  
Sbjct: 869 MP-ELPANLQLAKLQIKQ-EIETERITQDGIIYSYLAAQELGLKDDIRKQVYQNVDGITM 926

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           K++K+  D    K     ++L     EKK       ++D L +    D  +LS + L G
Sbjct: 927 KDIKAFHDKYLSKKPYTYVILAS---EKKL------SKDDLQKI--GDFKKLSLEELFG 974


>gi|257065839|ref|YP_003152095.1| hypothetical protein Apre_0323 [Anaerococcus prevotii DSM 20548]
 gi|256797719|gb|ACV28374.1| hypothetical protein Apre_0323 [Anaerococcus prevotii DSM 20548]
          Length = 422

 Score = 40.9 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 68/182 (37%), Gaps = 27/182 (14%)

Query: 724 EAITGQRA-RSHLMGQDEKLKSL-ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           E + G +A    L  Q ++ K L A  +K++    +  +E++   Y +++ ++ + K  +
Sbjct: 138 EQVAGVKAEIDKLQEQIDEYKRLQAELIKIANQQYLTAMEKVNTAYGQIEALNKQIKETI 197

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASVL 839
              +     + D        +  +  EL++++  ++ ++ S           +E K  VL
Sbjct: 198 TEIEGKLDTLKD------KANAKEINELRTMLSGVKSELPSVPATPSTPAKPEESKEEVL 251

Query: 840 IVVTE---DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               +   D      AV+L +++A  +                 N    D  +    + +
Sbjct: 252 AKAEKAYDDARVTVKAVELIKVTAPKVYE--------------KNKVAIDAYLEKANAAV 297

Query: 897 KK 898
            K
Sbjct: 298 NK 299


>gi|254497797|ref|ZP_05110565.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254352974|gb|EET11741.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 211

 Score = 40.9 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 31/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +++ + +S  +  ++F +T  ++ +GGQ  DT    G  +     +       +   H +
Sbjct: 13  QLMTKVISVNENRLLFAETIGFSFSGGQESDTVRVNGLMVTHSEIEDDLIYYTLPSGHGL 72

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E         +++ ID+  R +L   H A  L+   +  +L   + + G+ I     R 
Sbjct: 73  SE------GDVVLMEIDFVRRYKLMRLHFAAELILELVQRMLP--IEKIGAHIAEHKARI 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D ++          +I D  + ++ +   ++ + M      +             + R  
Sbjct: 125 DFSY--------QHNISDIFDSLLFEYNQIIAKDMLIRTGFSDE---------KSQRRYW 167

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            +E       S   CGGTHV ST E+  + +   +++  G  RIE
Sbjct: 168 EIEGF-----SKVSCGGTHVKSTAEVGYITLKR-ANVGKGKERIE 206


>gi|189204870|ref|XP_001938770.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187985869|gb|EDU51357.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1246

 Score = 40.9 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNV--VGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           TG RA+  L  + +  +     L   Q +V    R+E++  E ++ +    K K +L + 
Sbjct: 60  TGTRAQDDL--ERDIGRQADQML-TEQADVRDKKRIEKLEGEAKRAEAAIQKLKNRLALP 116

Query: 785 DLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            L   K     ++      I ++D +     MD++Q++I  
Sbjct: 117 ALDTQKAKLRGEIAAYRQKIDDLDME-----MDSIQQRIND 152


>gi|63081091|gb|AAY30304.1| M protein [Streptococcus pyogenes]
          Length = 321

 Score = 40.9 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCH 789
           L   +EKLK+  S LK     +    EE+ ++ R+L     +   Q     L ++     
Sbjct: 56  LEHNNEKLKTENSDLKTENSKLTSEKEELTQKNRELTKEKEELSKQKETLGLALDKTIDE 115

Query: 790 KIADVNFMSHIISEVD--SKELKSVMDA-LQKKIQSG 823
           KI   N     I ++   +K LK  +D  +++KI+S 
Sbjct: 116 KIKSDNDHKKEIGDLSNVNKTLKQALDKTIEEKIKSD 152


>gi|268579273|ref|XP_002644619.1| C. briggsae CBR-LFI-1 protein [Caenorhabditis briggsae]
          Length = 2318

 Score = 40.9 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           T   AR      DE   S+    K     +  R+E +  E  +L+      K +    + 
Sbjct: 603 TTDDARKLRDEMDEHTNSIQEEFKTRIDELNRRIENLLRENNRLKSEVNPLKDKYRDLE- 661

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
                 + N     I E ++ +L+   D ++K IQ  +
Sbjct: 662 -----NEYNSTQRRIEERET-QLR-YADDIRKNIQKDL 692


>gi|126306346|ref|XP_001367142.1| PREDICTED: similar to translocated promoter region (to activated
           MET oncogene), [Monodelphis domestica]
          Length = 2364

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + +         LK 
Sbjct: 191 HNQNTWLNTELKTKTDELLAVGREK-----GNEILELKCNLENKKEEVVRMEEQLNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  N+   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNENLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              +D L K ++  
Sbjct: 304 TRAVDELHKLLKET 317


>gi|84391249|ref|ZP_00991580.1| hypothetical protein V12B01_23844 [Vibrio splendidus 12B01]
 gi|84376538|gb|EAP93416.1| hypothetical protein V12B01_23844 [Vibrio splendidus 12B01]
          Length = 649

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 48/108 (44%), Gaps = 2/108 (1%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVD 805
           + ++ S+ +++  +  +    +          L+ + + L    +  ++  +  I    D
Sbjct: 357 NAVQSSRESLIEELSRVGNYKKDSSKALNSLLLKRDKQKLKIRDVNTEIKQLKKIFRVKD 416

Query: 806 SKELKSVMDALQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNA 852
           + E++  ++ ++ +I++ +  +++   ++ K   L+ +  +L +   A
Sbjct: 417 NTEIRDALNQIKGRIETILEFIVISQKQDDKPLNLLEMKAELEENQKA 464


>gi|119595228|gb|EAW74822.1| nuclear mitotic apparatus protein 1, isoform CRA_b [Homo sapiens]
          Length = 2128

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|119595227|gb|EAW74821.1| nuclear mitotic apparatus protein 1, isoform CRA_a [Homo sapiens]
 gi|119595230|gb|EAW74824.1| nuclear mitotic apparatus protein 1, isoform CRA_a [Homo sapiens]
          Length = 2101

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|119595236|gb|EAW74830.1| nuclear mitotic apparatus protein 1, isoform CRA_h [Homo sapiens]
          Length = 2110

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|119595234|gb|EAW74828.1| nuclear mitotic apparatus protein 1, isoform CRA_f [Homo sapiens]
          Length = 2124

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|114639137|ref|XP_001174416.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 4 [Pan
            troglodytes]
 gi|114639139|ref|XP_001174419.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 5 [Pan
            troglodytes]
 gi|114639141|ref|XP_001174423.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 6 [Pan
            troglodytes]
 gi|114639143|ref|XP_001174425.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 7 [Pan
            troglodytes]
 gi|114639145|ref|XP_001174429.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 8 [Pan
            troglodytes]
 gi|114639147|ref|XP_001174434.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 9 [Pan
            troglodytes]
 gi|114639149|ref|XP_001174441.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 10 [Pan
            troglodytes]
 gi|114639151|ref|XP_001174445.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 11 [Pan
            troglodytes]
 gi|114639153|ref|XP_001174447.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 12 [Pan
            troglodytes]
 gi|114639155|ref|XP_001174451.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 13 [Pan
            troglodytes]
 gi|114639157|ref|XP_001174454.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 14 [Pan
            troglodytes]
 gi|114639159|ref|XP_001174457.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 15 [Pan
            troglodytes]
 gi|114639161|ref|XP_001174461.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 16 [Pan
            troglodytes]
 gi|114639163|ref|XP_001174466.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 17 [Pan
            troglodytes]
 gi|114639165|ref|XP_001174470.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 18 [Pan
            troglodytes]
 gi|114639167|ref|XP_001174474.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 19 [Pan
            troglodytes]
 gi|114639169|ref|XP_001174485.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 20 [Pan
            troglodytes]
          Length = 2111

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|114639171|ref|XP_001174410.1| PREDICTED: nuclear mitotic apparatus protein 1 isoform 3 [Pan
            troglodytes]
 gi|114639173|ref|XP_508618.2| PREDICTED: nuclear mitotic apparatus protein 1 isoform 21 [Pan
            troglodytes]
          Length = 2097

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|62087262|dbj|BAD92078.1| Nuclear mitotic apparatus protein 1 variant [Homo sapiens]
          Length = 1585

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722 RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 526 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 584

Query: 781 LNVEDLSCHKIAD 793
                 +  + A 
Sbjct: 585 HASGSGAQSEAAG 597


>gi|31455194|gb|AAH13023.1| NUMA1 protein [Homo sapiens]
          Length = 1193

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722 RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 134 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 192

Query: 781 LNVEDLSCHKIAD 793
                 +  + A 
Sbjct: 193 HASGSGAQSEAAG 205


>gi|71361682|ref|NP_006176.2| nuclear mitotic apparatus protein 1 [Homo sapiens]
 gi|145559510|sp|Q14980|NUMA1_HUMAN RecName: Full=Nuclear mitotic apparatus protein 1; Short=NuMA
            protein; AltName: Full=SP-H antigen
 gi|119595231|gb|EAW74825.1| nuclear mitotic apparatus protein 1, isoform CRA_d [Homo sapiens]
 gi|208965292|dbj|BAG72660.1| nuclear mitotic apparatus protein 1 [synthetic construct]
          Length = 2115

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|68533069|dbj|BAE06089.1| NUMA1 variant protein [Homo sapiens]
          Length = 2121

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1048 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 1106

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1107 HASGSGAQSEAAG 1119


>gi|35119|emb|CAA77669.1| NuMA protein [Homo sapiens]
          Length = 2115

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|35121|emb|CAA77670.1| NuMA protein [Homo sapiens]
          Length = 2101

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|290491232|ref|NP_001166491.1| STE20-like serine/threonine-protein kinase [Cavia porcellus]
 gi|81908391|sp|O55092|SLK_CAVPO RecName: Full=STE20-like serine/threonine-protein kinase;
           Short=STE20-like kinase; AltName: Full=STE20-related
           serine/threonine-protein kinase; Short=STE20-related
           kinase
 gi|2911114|dbj|BAA24930.1| serine/threoine kinase [Cavia porcellus]
          Length = 1231

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     + L+    KR+ +   +    
Sbjct: 898 DEAKRIKGEQEKELSKFQNILKNRKKEVLNEVEKAP---KDLRKELMKRRKEELAQ---S 951

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             + + +F+     E+D   LK ++   + ++ +
Sbjct: 952 QHVQEQDFVQKQQQELDG-SLKKIIQQQKAELAN 984


>gi|743447|prf||2012303A SP-H antigen
          Length = 2115

 Score = 40.9 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|328865269|gb|EGG13655.1| bromodomain-containing protein [Dictyostelium fasciculatum]
          Length = 1155

 Score = 40.9 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           I AIT          +  KL++  +     + +   R++++ EE + +Q    K K +  
Sbjct: 537 IMAIT---LEDIFERKYSKLQNTPNLETAEEVSEEERIKKLTEENKHMQKELEKMKRESR 593

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
                   + +   +   IS +  + L+ ++  +   + +  
Sbjct: 594 KPKQPQMTLEEKTQLGTNISFLPPERLRDLISIVSHTLPNTA 635


>gi|281350290|gb|EFB25874.1| hypothetical protein PANDA_004319 [Ailuropoda melanoleuca]
          Length = 352

 Score = 40.9 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 76/226 (33%), Gaps = 27/226 (11%)

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
           +        +     +++N    +  P VT+           A     +     +    +
Sbjct: 126 SQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPTQNALPFSHSSAISKHWEAEL 185

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLM 736
            +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     +H  
Sbjct: 186 ATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHTHKT 245

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-- 794
             ++ ++ L   LKV +  +  R+++  +  R+LQ        +L   ++    +     
Sbjct: 246 ELNQTIQELEETLKVKEEEI-ERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLEGQLS 304

Query: 795 -----------------NFMSHIISEVDSK--ELKSVMDALQKKIQ 821
                            N +  ++  +D K  EL  + D L K ++
Sbjct: 305 DLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLAKLLE 350


>gi|194291558|ref|YP_002007465.1| chemotaxis methyltransferase protein; contains methylesterase
           domain (cheb), methylase of chemotaxis methyl-accepting
           proteins domain (cher), signal transduction histidine
           domain (nitrb), signal receiver (rec) domain
           [Cupriavidus taiwanensis LMG 19424]
 gi|193225462|emb|CAQ71408.1| Putative chemotaxis methyltransferase protein; contains
           Methylesterase domain (CheB), Methylase of chemotaxis
           methyl-accepting proteins domain (CheR), signal
           transduction histidine domain (NitrB), signal receiver
           (Rec) domain [Cupriavidus taiwanensis LMG 19424]
          Length = 1373

 Score = 40.9 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 27/121 (22%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +   + +L+     L+ +        EE+     +LQ I+ + +      + S  ++  +
Sbjct: 659 IAQLERELQRTKEQLQATIEQSETSTEELKASNEELQAINEELRSATEELETSKEELQSI 718

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
           N           +EL +V   L+ K          + +  K +      +DL +   A D
Sbjct: 719 N-----------EELTTVNAELKSK----------VEETGKIN------DDLQNLITAND 751

Query: 855 L 855
           +
Sbjct: 752 I 752


>gi|170077251|ref|YP_001733889.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|169884920|gb|ACA98633.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 604

 Score = 40.9 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 70/191 (36%), Gaps = 15/191 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H++  A+  +        G   T +G  +D    +P T A+LK+I+  +  I+ + 
Sbjct: 28  HTTSHVMAMAVQKLFPDAQVTIGPW-TENGFYYDFDKPEPFTEADLKAIKKEMVKIVKKK 86

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVSSTG 703
           LPVV   ++R +A        +   Y   +       +     G     LC G HV +TG
Sbjct: 87  LPVVREEISRAEAEKR--IKEINEPYKLEILAGIHDPITLYYLGDQWWDLCAGPHVENTG 144

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I     ++  S+     R     G      L             LK        + E +
Sbjct: 145 DINP-KAIALESVAGAYWR-----GDENNQQLQRIYGTAWETPEQLK---EYQRRKEEAL 195

Query: 764 WEEYRKLQLIH 774
             ++RKL    
Sbjct: 196 KRDHRKLGREL 206


>gi|126738787|ref|ZP_01754483.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           SK209-2-6]
 gi|126719968|gb|EBA16675.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           SK209-2-6]
          Length = 581

 Score = 40.9 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 16/145 (11%)

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +  R++++  E R ++       L+            D   +           +  V   
Sbjct: 325 LAERLDQLNSERRDIENAVRAAALEQAEARGF-----DAPLVWAAGEGWHPGVVGIVASR 379

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA-RLSAKVLGGGGGGGRPHM 874
           L++      +++     E K S     +   +   +      R +A+ L   GGG +  M
Sbjct: 380 LKEATGRPAVVIGLNDGEGKGS---GRS---VTGIDLGAAIQRTAAEGLLLKGGGHK--M 431

Query: 875 AQSGGPNG-NKADQAIAGVASFLKK 898
           A +G        + A+  +A  L K
Sbjct: 432 A-AGLTLAEENLEPAMERLAELLAK 455


>gi|301168368|emb|CBW27958.1| chromosome partition protein [Bacteriovorax marinus SJ]
          Length = 1264

 Score = 40.9 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + A        EKL  + S LK     ++   +E+  + ++       ++ +L+      
Sbjct: 484 RDAVHTAQELSEKLTEVESELKSEIEELISANKELDAKLKEKSKSLITKESKLSSLQEIA 543

Query: 789 HKIADVN-FMSHIISEVDSK 807
             +  V       +  VDS 
Sbjct: 544 AAMDGVREGAVEFLETVDSD 563


>gi|49474581|ref|YP_032623.1| 17-kDa antigen precursor [Bartonella quintana str. Toulouse]
 gi|6715298|gb|AAF26361.1|AF199006_1 17kDa antigen-like protein [Bartonella quintana]
 gi|6715300|gb|AAF26362.1|AF199007_1 17kDa antigen-like protein [Bartonella quintana]
 gi|49240085|emb|CAF26523.1| 17-kDa antigen precursor [Bartonella quintana str. Toulouse]
          Length = 148

 Score = 40.9 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 19/114 (16%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--------------LQLIH 774
           +RA  +    D      A  +  S   +  +++EI E+ RK              LQ+  
Sbjct: 31  KRALENTQKLDAAKSETAESIYASANEITNKIKEINEKLRKAQAAEKTKPEEFQALQIEL 90

Query: 775 AKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  + QL  + L        +  +      I  E   K+ K + + L++K+ + 
Sbjct: 91  SLLQAQLQADTLKIQFLSMIQAKNTKTKEDIREEQTQKKHKDLQEKLKEKLGNS 144


>gi|254796519|ref|YP_003081355.1| ATP-dependent chaperone ClpB [Neorickettsia risticii str. Illinois]
 gi|254589756|gb|ACT69118.1| ATP-dependent chaperone ClpB [Neorickettsia risticii str. Illinois]
          Length = 831

 Score = 40.9 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RIE+ +       L  +  +LK  A  LK  +  N VGR+E+I ++   L+   A  +  
Sbjct: 380 RIESDSKPEVIDELDRKIVQLKIEAEALKKEKDANSVGRLEKIKQDLEGLEKKQADLESS 439

Query: 781 LNVEDLSCHKIADVN 795
              E     +I  + 
Sbjct: 440 WQAEKSKLKEIQKLK 454


>gi|164687641|ref|ZP_02211669.1| hypothetical protein CLOBAR_01283 [Clostridium bartlettii DSM
           16795]
 gi|164603415|gb|EDQ96880.1| hypothetical protein CLOBAR_01283 [Clostridium bartlettii DSM
           16795]
          Length = 792

 Score = 40.9 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             ++  I  I+A    R    +  +++ +    S           + E I +E RKL+  
Sbjct: 541 EKLKKEIEDIKAEYEGRLERVMAQREKIISKAKSEAFSITRQAKEQSENILKELRKLETE 600

Query: 774 HAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSV--MDALQ--KKIQSGI 824
            A ++ Q  +E L       +     +  S I+ +V SKE+K +   D ++     Q G 
Sbjct: 601 MASKQKQQKIEALRKELSDSMGNLQPSVKSMIVPKVSSKEIKDLKPGDDVKVVTLNQDGT 660

Query: 825 IMLVGISKEKKASVL 839
           ++   + K+KK +++
Sbjct: 661 VV--SVDKKKKEALV 673


>gi|119595229|gb|EAW74823.1| nuclear mitotic apparatus protein 1, isoform CRA_c [Homo sapiens]
 gi|119595233|gb|EAW74827.1| nuclear mitotic apparatus protein 1, isoform CRA_c [Homo sapiens]
          Length = 1536

 Score = 40.9 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTVKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|70605904|ref|YP_254774.1| DNA double-strand break repair rad50 ATPase [Sulfolobus
           acidocaldarius DSM 639]
 gi|18202023|sp|O33600|RAD50_SULAC RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|2293014|emb|CAA71688.1| purine NTPase [Sulfolobus acidocaldarius]
 gi|21388537|emb|CAD26845.1| Rad50 protein [Sulfolobus acidocaldarius]
 gi|68566552|gb|AAY79481.1| DNA double-strand break repair rad50 ATPase [Sulfolobus
           acidocaldarius DSM 639]
          Length = 886

 Score = 40.9 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 43/94 (45%), Gaps = 8/94 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQLIHAKRKLQLNVEDLS 787
              L  +   L+S+   LK  +  +  R+++  EE +     ++    +++ +LN  +  
Sbjct: 174 IKVLTDRIRSLQSIKDILKREEAEI-DRLKKEIEEIKVKLENIEREAKEKEDELNQYNTE 232

Query: 788 CHKIADVNFMSHIISE---VDSKELKSVMDALQK 818
            ++I ++     I+S    V +K+++ +   L+ 
Sbjct: 233 FNRIKEIKVQYDILSGELSVVNKKIEEIALRLKD 266


>gi|291394941|ref|XP_002713943.1| PREDICTED: homer 1 [Oryctolagus cuniculus]
          Length = 389

 Score = 40.9 bits (94), Expect = 1.00,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 78/226 (34%), Gaps = 27/226 (11%)

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
           +        +     +++N    +  P VT+           A  L  +     +    +
Sbjct: 163 SQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRPEPTQNALPLSHSSAISKHWEAEL 222

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLM 736
            +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     +H  
Sbjct: 223 ATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHTHKT 282

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-- 794
             ++ ++ L   LKV +  +  R+++  +  R+LQ        +L   ++    +     
Sbjct: 283 ELNQTIQELEETLKVKEEEI-ERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLEGQLS 341

Query: 795 -----------------NFMSHIISEVDSK--ELKSVMDALQKKIQ 821
                            N +  ++  +D K  EL  + D+L K ++
Sbjct: 342 DLEQRLERSQTEQEAFRNNLKTLLEILDGKIFELSELRDSLAKLLE 387


>gi|34536017|dbj|BAC87508.1| unnamed protein product [Homo sapiens]
          Length = 1080

 Score = 40.9 bits (94), Expect = 1.00,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                  +KL  + + L+ +Q      V   E++ +  +KL+  +AK K+ +  +     
Sbjct: 811 DETQDLKKKLGQIRNQLQEAQDRHTEAVRCAEKMQDHKQKLEKDNAKLKVTIKKQMDKIE 870

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           ++   N ++  +SE + ++LK +M  L++ ++
Sbjct: 871 ELQK-NLLNANLSEDEKEQLKKLM-ELKQSLE 900


>gi|29436380|gb|AAH49849.1| MYH9 protein [Homo sapiens]
          Length = 1374

 Score = 40.9 bits (94), Expect = 1.00,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 1070 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNK 1129

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +VN +   + E ++K  ++ + 
Sbjct: 1130 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQ 1188

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGGG 868
             +++K    +  L    ++ K        +  L++          +LA    KVL  G G
Sbjct: 1189 EMRQKHSQAVEELAEQLEQTKRV------KANLEKAKQTLENERGELANEV-KVLLQGKG 1241


>gi|115615251|ref|XP_798120.2| PREDICTED: similar to CG6179-PA [Strongylocentrotus purpuratus]
 gi|115925599|ref|XP_001194610.1| PREDICTED: similar to CG6179-PA [Strongylocentrotus purpuratus]
          Length = 2278

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 28/118 (23%)

Query: 732  RSHLMGQDEKLKSLA---SFLKVSQGNVV-----------------GRVEEIWEEYRKLQ 771
               L   D+KL+ ++   S LK  +  +                    V +I E+ R+L+
Sbjct: 1273 LDQLYDLDKKLQEISARVSVLKDEKDKIENTLQRLDQQIIHDWDDKEMVAKIEEQQRQLE 1332

Query: 772  LIHAKRKLQLNVEDLSCHKIA--------DVNFMSHIISEVDSKELKSVMDALQKKIQ 821
                + +LQL        +I         +V  M   +  V++   +   D++++K+Q
Sbjct: 1333 RQLTRVRLQLAQGTKELEEITAENSRIEHEVALMKSGMEGVNNANTQKSADSVKEKLQ 1390


>gi|312377384|gb|EFR24223.1| hypothetical protein AND_11330 [Anopheles darlingi]
          Length = 1457

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---IHAKRKLQLNVEDLSCHKI 791
           +    E+  +L S L+ +      +++++ EE  + ++      ++K  L  ++LS    
Sbjct: 479 VAKLLEEKGALESQLQSTSAEAAEKLKQLEEELAQREIAWQKDEEQKAALTKQELSQRDA 538

Query: 792 A-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
                 ++    +      +  +  LQ+K++   + L   S +
Sbjct: 539 KLGELTVATEERQKQLDAARQTLKELQEKLKETDVALASKSAD 581


>gi|302837752|ref|XP_002950435.1| hypothetical protein VOLCADRAFT_90809 [Volvox carteri f.
           nagariensis]
 gi|300264440|gb|EFJ48636.1| hypothetical protein VOLCADRAFT_90809 [Volvox carteri f.
           nagariensis]
          Length = 1302

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 60/140 (42%), Gaps = 18/140 (12%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV-- 760
            +   +    E  + A  R++ A+T +R    L    EKL    + +K    +++ +V  
Sbjct: 639 ADFEAVRTEFEQRLAAAERKVYALTKER--DALRKGSEKLADYGALVKEK-DDIIKQVMD 695

Query: 761 --EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             E++ ++  +L+ I  + + QL+  +    K+A          E    ELK     ++ 
Sbjct: 696 EGEKLSKKQVELEGIIKRLRGQLSATEGERDKVAG----RLAAEEAAVGELK----RVRA 747

Query: 819 KIQSGIIMLVGISKEKKASV 838
           K++     L+  +++ KA +
Sbjct: 748 KLEKD---LLAAAEQSKADL 764


>gi|148656960|ref|YP_001277165.1| polynucleotide adenylyltransferase region [Roseiflexus sp. RS-1]
 gi|148569070|gb|ABQ91215.1| Polynucleotide adenylyltransferase region [Roseiflexus sp. RS-1]
          Length = 874

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 37/177 (20%)

Query: 698 HVSSTG-EIMLLYIVSESSIRA----GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           H+  T  E  LL +            G R I+A             +   + L   L   
Sbjct: 126 HLPLTSVEATLLLLGIYEDTGNLTLPGTRAIDAACAAWLLERGARIEAVGEFLRRPLSAG 185

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH--IISEVDSKELK 810
           Q  V+  +E+                       +   +I+  + +     +      EL 
Sbjct: 186 QEQVLHHLEQ----------------------TMRLEEISGWSVLFAWARVDG-PVPELS 222

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
           S+   L+      +I+L   + +    +++  + D     +A  L    A   GGGG
Sbjct: 223 SLAHRLRDLYAPAVIVLAIATGDTGTQLILRASADT---LDAGAL----AARFGGGG 272


>gi|326511323|dbj|BAJ87675.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 615

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
               E+       E+  +  +RR       + +  L   + K++ L   +  ++ ++  +
Sbjct: 122 KRIEELNSSLSSKEAEYQ-NLRRF----SHQTKESLEFANAKIQQLEEEIHTTKNDLASK 176

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  I     KLQ +++ +K      +    +  D+   S + +  DS+ L    D +++ 
Sbjct: 177 ISSIDSLNEKLQALNSAKKEADEKINELIKECTDLKASSEMRTNHDSELLSEKDDLIKQL 236

Query: 820 IQSGIIMLVGISKE 833
            +   + L   SK+
Sbjct: 237 EEKLSVALSASSKD 250


>gi|300863511|ref|ZP_07108463.1| threonyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300338467|emb|CBN53605.1| threonyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 608

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H++  A+  +    +   G  I  +G  +D    +  T  +LKSI+  +  II + 
Sbjct: 32  HTTSHVMAMAVQKLFPKALVTIGPWI-ENGFYYDFDIPEAFTEKDLKSIKKEMIKIINRK 90

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVR---VVSVEYEDGGVHSSALCGGTHVSSTG 703
           LP++   ++RE+A        +   Y   +       +     G     LC G H+ +T 
Sbjct: 91  LPLIREEVSREEAERR--IKEINEPYKLEILEGLTEPITIYHLGDEWWDLCAGPHLENTS 148

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           E+     +   S+     R     G   ++ L                +   +      +
Sbjct: 149 ELNP-KAIELESVAGAYWR-----GDETKAQLQRIYGTAWE-------NPEQLQEYQRRK 195

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++RKL    
Sbjct: 196 EEALRRDHRKLGKEL 210


>gi|292656403|ref|YP_003536300.1| hypothetical protein HVO_2276 [Haloferax volcanii DS2]
 gi|291370857|gb|ADE03084.1| conserved hypothetical protein [Haloferax volcanii DS2]
          Length = 1397

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 51/144 (35%), Gaps = 22/144 (15%)

Query: 721 RRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVV-----GRVEEIWEEYRKLQLI 773
           +R+E +    + A   L    + L +L   ++    ++         E+  E  R+L+  
Sbjct: 236 KRVEVLEEADEDATLDLRESIDNLPNLLEDVERIPEDIPLSELRDTCEKAEEAIRELEPQ 295

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS--------GII 825
               K + + E      +             D ++L+  +  L+  I S          +
Sbjct: 296 LRTLKEEADAEKDEVETLEKSTLY-------DFRQLRKAVTGLKNHIDSNDFQAAEDAAL 348

Query: 826 MLVGISKEKKASVLIVVTEDLLDR 849
            ++G +   K  +L  V ++  ++
Sbjct: 349 KVLGDAGVGKTHLLCNVAKNRTEK 372


>gi|156084114|ref|XP_001609540.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia
           bovis]
 gi|154796792|gb|EDO05972.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia
           bovis]
          Length = 1349

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 38/417 (9%), Positives = 110/417 (26%), Gaps = 44/417 (10%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           + G+ + +   G   ++      ++     +             ++       A      
Sbjct: 432 ENGKDINKNKLGAIFKLYILSCAYFTGLQKKNTTESTPRTPK-TIREILYWLSALPYSPA 490

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQ-LSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           +  + +        +   +  + +        +A   +H          V+Q    +   
Sbjct: 491 YPEILQHSKEVMKKVAPDVGDKKQLSFYQTGRTAPITVHEFNLFAHFQAVTQYCPLVLIG 550

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
                 +      + E        N       P V   +   + +     AL    Y   
Sbjct: 551 IQGGLHSTKGTDKTTEPPIHSLYANTECHFTYPAV--SIQAYNQVVHYIRALFYQLY--F 606

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ--RARS 733
           +R         G        G  V     +  + +  +        R+E +        +
Sbjct: 607 LRKQCAVKVALGGKWRECRYGDGVLGRDVVSWMCLGCDPMGHDRKCRVEKVKEGLGGVVN 666

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            L   + + +S      V    +   +E++ +    +  +  +        D     +  
Sbjct: 667 KLKALEGEAESTGGINGVK--ELREGIEKLRDILEAIGEVVVQLGNAQERLDRGNADLGG 724

Query: 794 VNFMSHIISEVDS--KELKSVMDALQKKIQSGIIML--VGISKE--KKASVLIVVTEDLL 847
           V      +  V++   + K V+  +  +++  +  L   G  K+  +K    +   +D++
Sbjct: 725 VMNALKKVEGVNNGTNDFKGVLQEVLGRLEKLVEALEKAGGLKDVKEKVKTALTAAKDVV 784

Query: 848 DRFN------AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            + N        +L   +                       +   +A+  +   ++K
Sbjct: 785 GKQNGTDVDPCKNLVSAA----------------------IDGLQKALDALKEGVEK 819


>gi|18976800|ref|NP_578157.1| partial alanyl-tRNA synthetase matches COOH terminus [Pyrococcus
           furiosus DSM 3638]
 gi|18892395|gb|AAL80552.1| partial alanyl-tRNA synthetase matches COOH terminus [Pyrococcus
           furiosus DSM 3638]
          Length = 149

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 2/136 (1%)

Query: 584 SINHSATHLLHHALSTILGSHV-SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              H+A H+L  A+  +LG          +  +  R  V  ++  T  E++ IE   N+ 
Sbjct: 4   IRTHTALHVLKGAVVKVLGEGAKWTASVYVNGNHGRLTVKFNRKPTHEEIREIERLANEK 63

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I +N+P+    ++RE+A        +   +     V +++       +   C   H  +T
Sbjct: 64  IKENVPIQIYELSREEAEKIFG-DEMYDLFPVPEHVRTLKVVVIEDWNVNACNKEHTKTT 122

Query: 703 GEIMLLYIVSESSIRA 718
           GEI  + I      ++
Sbjct: 123 GEIGEIKIRKVRFRKS 138


>gi|295982764|gb|ADG63229.1| myosin XIb [Physcomitrella patens]
          Length = 1535

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 72/250 (28%), Gaps = 31/250 (12%)

Query: 621  VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +  +K  T  +             +       I       A             +V    
Sbjct: 828  IRQTKAATRIQAHWRGYKARSEYRKCRKSAITIQ-----CAWRGRVARNELKKLKVAAKE 882

Query: 681  VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                                       +    E +    I +++A   +          +
Sbjct: 883  TGALQEAKTKLEKRCEELTWRLQLEKRMRTDMEEAKNQEIGKLQAALKEEQIQAQKANSQ 942

Query: 741  KLKSL----------ASFLK-VSQGNVVG-RVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              K L          A  +K V    V   +VE++ +E ++LQ +    K  ++  +   
Sbjct: 943  LTKELEDNKLALGQAAQVIKEVPPVEVFDAKVEKLTKENQELQALLEDLKKTVSESEEKF 1002

Query: 789  HKIADVN-FMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKEKKA----SVLIV 841
             K  D +        + ++K  E +  + +LQ+K       L  +  E +     ++++ 
Sbjct: 1003 AKAKDESEQRLKRAEQAEAKVTESQEALQSLQEK-------LANMESENQVLRQQTLVLS 1055

Query: 842  VTEDLLDRFN 851
             T+ L +RF 
Sbjct: 1056 PTKGLSNRFK 1065


>gi|165932577|ref|YP_001649366.1| hypothetical protein RrIowa_0029 [Rickettsia rickettsii str. Iowa]
 gi|165907664|gb|ABY71960.1| hypothetical protein RrIowa_0029 [Rickettsia rickettsii str. Iowa]
          Length = 1866

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 727 TGQRARSHLMGQDEKL---KSLASFLKVSQGNVVGRVE--EIWEEYRKLQLIHAKRKLQL 781
           TG++ +  L     +L   +     LK     +  +++  +  ++ +KL+     +  + 
Sbjct: 310 TGKKDKERLQKLYRQLTSTQKTTEVLKSRAEEIETKIKIGKNKDKIKKLEKELTSKNNKA 369

Query: 782 NVEDLSCHKIA 792
           +       KI 
Sbjct: 370 DRLFQKIEKID 380


>gi|168023256|ref|XP_001764154.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684594|gb|EDQ70995.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1346

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 72/250 (28%), Gaps = 31/250 (12%)

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +  +K  T  +             +       I       A             +V    
Sbjct: 687 IRQTKAATRIQAHWRGYKARSEYRKCRKSAITIQ-----CAWRGRVARNELKKLKVAAKE 741

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                                      +    E +    I +++A   +          +
Sbjct: 742 TGALQEAKTKLEKRCEELTWRLQLEKRMRTDMEEAKNQEIGKLQAALKEEQIQAQKANSQ 801

Query: 741 KLKSL----------ASFLK-VSQGNVVG-RVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             K L          A  +K V    V   +VE++ +E ++LQ +    K  ++  +   
Sbjct: 802 LTKELEDNKLALGQAAQVIKEVPPVEVFDAKVEKLTKENQELQALLEDLKKTVSESEEKF 861

Query: 789 HKIADVN-FMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKEKKA----SVLIV 841
            K  D +        + ++K  E +  + +LQ+K       L  +  E +     ++++ 
Sbjct: 862 AKAKDESEQRLKRAEQAEAKVTESQEALQSLQEK-------LANMESENQVLRQQTLVLS 914

Query: 842 VTEDLLDRFN 851
            T+ L +RF 
Sbjct: 915 PTKGLSNRFK 924


>gi|145484332|ref|XP_001428176.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395260|emb|CAK60778.1| unnamed protein product [Paramecium tetraurelia]
          Length = 812

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 729 QRARSHLMGQDEKLKSL---ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            R    L  Q E+ K L          Q  +   ++++ ++ ++LQ  + + K +  +  
Sbjct: 231 DREIYELQQQLERDKELLRKQQEFSNKQDLLTKEIQKLNQQLKQLQKENQELKNEKQLIS 290

Query: 786 LSCHK-------IADVNFMSHIISEVDS 806
               +       +  +N +   +  +++
Sbjct: 291 SELQENRANPEYLTKINLLGQEVERLNN 318


>gi|73952177|ref|XP_849709.1| PREDICTED: similar to Homer protein homolog 1 isoform 2 [Canis
           familiaris]
 gi|109077737|ref|XP_001109170.1| PREDICTED: homer protein homolog 1 isoform 8 [Macaca mulatta]
          Length = 354

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 76/226 (33%), Gaps = 27/226 (11%)

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
           +        +     +++N    +  P VT+           A     +     +    +
Sbjct: 128 SQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPTQNALPFSHSSAISKHWEAEL 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLM 736
            +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     +H  
Sbjct: 188 ATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHTHKT 247

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-- 794
             ++ ++ L   LKV +  +  R+++  +  R+LQ        +L   ++    +     
Sbjct: 248 ELNQTIQELEETLKVKEEEI-ERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLEGQLS 306

Query: 795 -----------------NFMSHIISEVDSK--ELKSVMDALQKKIQ 821
                            N +  ++  +D K  EL  + D L K ++
Sbjct: 307 DLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLAKLLE 352


>gi|42522141|ref|NP_967521.1| FlgK, flagellar hook-associated protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39574672|emb|CAE78514.1| FlgK, flagellar hook-associated protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 469

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 15/109 (13%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
             LK  Q ++ G+++   EE  +L    A                         +    +
Sbjct: 153 GQLKAVQEDLDGQIKTTVEEVNQLSKEIASLNE---------------KVQMVEVQGTPA 197

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            + +   D L KK+   I +     ++   +V    T  L+    + +L
Sbjct: 198 NDERDRRDLLLKKLGEKIDISWAEGRDGMVTVTAGRTAILVSGIGSSEL 246


>gi|157827888|ref|YP_001494130.1| cell surface antigen [Rickettsia rickettsii str. 'Sheila Smith']
 gi|51557583|gb|AAU06432.1| surface antigen [Rickettsia rickettsii]
 gi|157800369|gb|ABV75622.1| cell surface antigen [Rickettsia rickettsii str. 'Sheila Smith']
          Length = 1866

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 727 TGQRARSHLMGQDEKL---KSLASFLKVSQGNVVGRVE--EIWEEYRKLQLIHAKRKLQL 781
           TG++ +  L     +L   +     LK     +  +++  +  ++ +KL+     +  + 
Sbjct: 310 TGKKDKERLQKLYRQLTSTQKTTEVLKSRAEEIETKIKIGKNKDKIKKLEKELTSKNNKA 369

Query: 782 NVEDLSCHKIA 792
           +       KI 
Sbjct: 370 DRLFQKIEKID 380


>gi|74003741|ref|XP_545283.2| PREDICTED: similar to Ski-like protein (Ski-related protein)
           (Ski-related oncogene) [Canis familiaris]
          Length = 685

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E ++  +A   L  + + L+     L+  Q     R+EE + E + L+    +   Q  
Sbjct: 560 VEMLSSSKAMKELTDEQQNLQK---ELESLQNEHAHRMEEFYIEQKDLEKKLEQVMKQKC 616

Query: 783 VEDLSCHKIADVNFMSHIIS--------EVDSKELKSVMDALQKK 819
             D +  K  +  + + +          E D +EL+   D L+++
Sbjct: 617 TCDSNLEKDKEAEYAAQLAELRQRLDHAEADRQELQ---DELRQE 658


>gi|326672723|ref|XP_003199726.1| PREDICTED: girdin [Danio rerio]
          Length = 1026

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 64/155 (41%), Gaps = 22/155 (14%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-----GRV-----EE 762
           + ++  G R+I+ + G+     +  +++ L+     LK+S   +       RV      +
Sbjct: 222 QKALENGTRKIQQLEGE--LQEVELENQSLQQSLEQLKISSKGLEPLAQENRVLEQENTQ 279

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS------EVDSKELKSVMDAL 816
           + ++ ++L+  + + + Q    D+   K+ + N     +         +   LK +   L
Sbjct: 280 LEKDKKQLEKENKRLRQQ---ADIKDSKLDEDNLRISQLEKENRSLGKEISALKDICGRL 336

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           ++  +    ++   + +KK ++  +  E + ++  
Sbjct: 337 KELEKENRELVKQSTIDKK-TLAALREELVNEKLK 370


>gi|289548463|ref|YP_003473451.1| chromosome segregation protein SMC [Thermocrinis albus DSM 14484]
 gi|289182080|gb|ADC89324.1| chromosome segregation protein SMC [Thermocrinis albus DSM 14484]
          Length = 1165

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 12/129 (9%)

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            H+    +   L I  E      I+R E +T       L    + L+   SFLK S G +
Sbjct: 329 EHLKH--DADRLRIEKEDLAHQLIQREEELTEDEVM--LEELQKTLQEKESFLKASFGEL 384

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
               E + E  +KL+     +K QL+  ++   KI D+      + E      + + ++L
Sbjct: 385 ----ESVEERIKKLEGTLRHKKDQLSQLEI---KIKDIQLRIERLEEELQNTEREL-ESL 436

Query: 817 QKKIQSGII 825
           ++  +  ++
Sbjct: 437 KEGSKDSVL 445


>gi|256544785|ref|ZP_05472157.1| surface protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399674|gb|EEU13279.1| surface protein [Anaerococcus vaginalis ATCC 51170]
          Length = 784

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +KI
Sbjct: 306 IKDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGEKLKQEKAKLEEEIRDKD---NKI 362

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 363 AQLNKEIEDLKNSNNDELVAEITQLKDELK 392



 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/84 (10%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--------LNVEDLS 787
               +  K +      +   +V  + ++ +E ++LQ  + K K             ++ +
Sbjct: 360 NKIAQLNKEIEDLKNSNNDELVAEITQLKDELKRLQDENEKLKEDYSSTKWELEAEKENT 419

Query: 788 CHKIADVNFMSHIISEVDSKELKS 811
                 +  M   +  ++ +  K 
Sbjct: 420 DKNENKIKEMQEKLESLEGELAKK 443


>gi|126332510|ref|XP_001380135.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 355

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 43/220 (19%)

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA---SFL 749
           +  G+ V                +   ++ +           L     +L  +      L
Sbjct: 14  MHWGSIVRGLHACSFCVRQGYEELERQLKEV-FKERSNILRQLSKTSRELDGIKVNLQSL 72

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-----VNFMSHIISEV 804
           K  + +    V+++ E  +K +      +     +     + A+     +NF+   +   
Sbjct: 73  KNDEASAKSDVQKLLELGKKQREEMKSLQEAFQKQLNEAAEKAEKQQATINFLKTEMERK 132

Query: 805 DSKELKSVMDA---LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
             K ++ + +    L+ K+ SG           K   L  +  +   +  A        +
Sbjct: 133 S-KMIRDLQNENKSLKNKLLSG----------NK---LCGIHAEESKKIQA-----QLKE 173

Query: 862 VLGGGGGGGRPHM---AQSGGPNGNKADQAIAGVASFLKK 898
           +  G        +   AQ         +Q +A     L+K
Sbjct: 174 LRYGKK-----DLIFKAQ----QLTDLEQKLAVAKDELEK 204


>gi|303233519|ref|ZP_07320181.1| LPXTG-motif cell wall anchor domain protein [Finegoldia magna
           BVS033A4]
 gi|302495357|gb|EFL55101.1| LPXTG-motif cell wall anchor domain protein [Finegoldia magna
           BVS033A4]
          Length = 620

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 5/115 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-----EEYRKLQLIHAKRKLQLNVEDLS 787
             L  Q++ +  LA  L       +    ++       +  +LQ   AK K +       
Sbjct: 350 EILNDQNKNINDLADKLNADMIKELEDFSKLSSSEQYAKIAELQKELAKLKKEYAKTSEG 409

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             ++  +      + + + K ++ +   L     +  +               +V
Sbjct: 410 IQQVKKLVTYQFHVKDTEGKGVQGLTLRLANVDDTSKVYTATSDANGLIQFKSMV 464


>gi|126729010|ref|ZP_01744825.1| threonyl-tRNA synthetase [Sagittula stellata E-37]
 gi|126710940|gb|EBA09991.1| threonyl-tRNA synthetase [Sagittula stellata E-37]
          Length = 660

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 14/173 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H   H++  A+  I    V      +   G  +D   ++P T  +L  IE  + +II   
Sbjct: 76  HDLAHIMARAVQEI-WPDVKVTIGPVIEHGWYYDFDRAEPFTPEDLGLIEKKMKEIINAR 134

Query: 647 LPVVTRIMNREDAIASGAAA---LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            PV T + +R DAIA              N                   LC G H+ +TG
Sbjct: 135 DPVRTEVWSRADAIAHYEKTGENYKVELVNAIPDDGQPIRMYWHGDWQDLCRGPHLQNTG 194

Query: 704 EIMLLYIVSESSIRA---------GIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           ++        S   A          ++RI  +  +  R  L      L+  A 
Sbjct: 195 QVPGDAFKLMSVAGAYWRGDSKRQMLQRIYGVAFKN-RDDLKKHLNMLEEAAK 246


>gi|238881346|gb|EEQ44984.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 2139

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 52/127 (40%), Gaps = 16/127 (12%)

Query: 723  IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----------QL 772
            ++ ++G ++   L    +K   ++  LK     +  + ++  +  +KL          + 
Sbjct: 1743 LQFLSGNKS-KELEDYIQKHSDISEKLKALTDELKEKTKQFDDSKKKLTELENDLTSTKK 1801

Query: 773  IHAKRKLQ----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                 K Q     N+E+    +I  +N    ++   +S   K + + +  K++S I +L 
Sbjct: 1802 ELETEKTQTSKFKNLEEGKDKEIVKLNKELELLKNDNSGAKKELSEKV-SKLESEIEILS 1860

Query: 829  GISKEKK 835
               ++KK
Sbjct: 1861 KELEDKK 1867


>gi|225849217|ref|YP_002729381.1| M penetrans paralogue family 2 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643905|gb|ACN98955.1| M penetrans paralogue family 2 [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 267

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 22/147 (14%)

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF-LKVSQGNVVGRVEEIWEE 766
           + +  +  I   +++ E  T       L+   + L+ L    L      +  ++EE+ + 
Sbjct: 1   MSLTLDERIEQEMKKYEIKTFADIVKALIEHPDWLEELRKIILTSELLELPKKMEELLQH 60

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIA---------------DVNFMSHIISEV--DSKEL 809
            + L+  H + + +++  +     +                DV  +   +  +  D   L
Sbjct: 61  LKTLEEKHDRLEKKVDKIEADVEVLKQDVAILKQDVAVLKQDVAVLKQDVEGLKKDVAVL 120

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKA 836
           K  ++ L+ +         G   E+K 
Sbjct: 121 KKDVNYLKGEFGK----FKGSDFERKV 143


>gi|149731090|ref|XP_001492214.1| PREDICTED: similar to SKI-like isoform 1 [Equus caballus]
          Length = 683

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL- 781
           +E +   +A   L  + + L+     L+  Q     R+EE + E + L+    +   Q  
Sbjct: 558 VEMLNSSKAMKELTEEQQNLQK---ELESLQNEHTQRMEEFYVEQKDLEKKLEQVMKQKC 614

Query: 782 -----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                  +D      A ++ +   +   ++   + + D L+++
Sbjct: 615 TCDSNLEKDKEAEYAAQLSELRQRLDHAEADR-QELQDELRQE 656


>gi|148266784|ref|YP_001245727.1| phage minor structural GP20 [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150392828|ref|YP_001315503.1| phage minor structural GP20 [Staphylococcus aureus subsp. aureus
           JH1]
 gi|258445241|ref|ZP_05693435.1| phage minor structural GP20 [Staphylococcus aureus A6300]
 gi|258447781|ref|ZP_05695919.1| phage minor structural GP20 [Staphylococcus aureus A6224]
 gi|147739853|gb|ABQ48151.1| phage minor structural GP20 [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945280|gb|ABR51216.1| phage minor structural GP20 [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257855955|gb|EEV78876.1| phage minor structural GP20 [Staphylococcus aureus A6300]
 gi|257858960|gb|EEV81825.1| phage minor structural GP20 [Staphylococcus aureus A6224]
 gi|269939879|emb|CBI48250.1| phage protein [Staphylococcus aureus subsp. aureus TW20]
          Length = 198

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 43/115 (37%), Gaps = 12/115 (10%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +  +  +  +DE++  L   +K     +   +EE+  +  +L+  + + +L   V+    
Sbjct: 45  EELKEEISKRDEQIVKLQDSVK-DDSEIQKELEELKNQNSELETKYKETQLNNAVKLAVA 103

Query: 789 HKIADVNFMSH--------IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            +  D N +          ++ +   K L   ++ L++   S   +        K
Sbjct: 104 KEANDANDILAFINKDELELVDDGTVKGLDKAIETLKE---SKPYLFASSKPVGK 155


>gi|297689605|ref|XP_002822236.1| PREDICTED: nuclear mitotic apparatus protein 1-like isoform 2 [Pongo
            abelii]
          Length = 2100

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTMKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|297689603|ref|XP_002822235.1| PREDICTED: nuclear mitotic apparatus protein 1-like isoform 1 [Pongo
            abelii]
          Length = 2114

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 722  RIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            R+E  T Q A +H L  ++ K + LA    +    +   +EE+ +  ++L+   AK++ +
Sbjct: 1042 RVEFATLQEALAHALTEKEGKDQELAKLRGLEAAQIKE-LEELRQTMKQLKEQLAKKEKE 1100

Query: 781  LNVEDLSCHKIAD 793
                  +  + A 
Sbjct: 1101 HASGSGAQSEAAG 1113


>gi|168700355|ref|ZP_02732632.1| ammonium transporter [Gemmata obscuriglobus UQM 2246]
          Length = 842

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 12/122 (9%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K +  +    + E+ +  +  +      K  LN         ADV   +  ++ ++ KEL
Sbjct: 41  KANPDDTETAIAELKKALKATEKELDATKKALNELKTGT---ADVKATATKVATLE-KEL 96

Query: 810 ---KSVMDALQ---KKIQSGIIMLVGISKEKKASV--LIVVTEDLLDRFNAVDLARLSAK 861
                    L+    K+ + +  +  +S + KA+   L+ + +   D   A +  +  A+
Sbjct: 97  AAATKTSTGLKADLAKLTADVNAVKAVSGDGKATAEKLVALEKGAEDSKKAAEGLKKDAE 156

Query: 862 VL 863
            L
Sbjct: 157 DL 158


>gi|75750411|ref|YP_319881.1| hypothetical protein ATV_gp50 [Acidianus two-tailed virus]
 gi|123874696|sp|Q3V4U6|Y1940_ATV RecName: Full=LRR repeat-containing protein ORF1940
 gi|74474794|emb|CAI59868.1| hypothetical protein [Acidianus two-tailed virus]
          Length = 1940

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
              +  Q+EK+K L     +     + R E++ +  ++  +   + +L+    D     + 
Sbjct: 1582 KEIAAQEEKIK-LKDLQSILPEETLERFEKLPDSLKEKVIDEIETRLRGKKVDEIEGIVN 1640

Query: 793  DV-----NFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            DV           + +    +LK+++DA  KK  +   +L
Sbjct: 1641 DVIDKYEKLYDSAVKDGMLNDLKNLIDAYSKKDNNATEVL 1680


>gi|3929342|sp|Q47502|CEAK_ECOLX RecName: Full=Colicin-K
 gi|1124900|emb|CAA61099.1| colicin K [Escherichia coli]
          Length = 548

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 30/167 (17%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDLSCHK 790
            +  +   +  +A  L+ +Q +V  +V       +  +KLQ     ++ + +  +     
Sbjct: 281 DVQSKQATVSRVAGELENAQKSVDVKVTGFPGWRDVQKKLQRQLEAKQAEYSAVENELKN 340

Query: 791 IADVN-FMSHIISEVDSKELKSVMDAL-QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
                   +  + E + K LK   DAL + +I+  +        +        +TE   +
Sbjct: 341 AVSFRDGKAAEVKEAEQK-LKEAQDALEKSQIKDAV--------DTMVGFYQYITEQYGE 391

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           ++    +A+  A+   G                    D+A+A    +
Sbjct: 392 KY--AKIAQDLAEKSKGKK--------------IQGVDEALAAFEKY 422


>gi|291404779|ref|XP_002718767.1| PREDICTED: serine/threonine kinase 2 isoform 1 [Oryctolagus
           cuniculus]
          Length = 1241

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 908 DEAKRIKGEQEKELSKFQNILKNRKKEVINEVEKAP---KELRKELMKRRREELAQSQHA 964

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 965 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 994


>gi|219872317|ref|YP_002476718.1| hypothetical protein BGAPBR_F0016 [Borrelia garinii PBr]
 gi|219694389|gb|ACL34914.1| conserved hypothetical protein [Borrelia garinii PBr]
          Length = 1035

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH----KI 791
               ++L  +    K  +     ++ E  E  +KL++   K+   L  + +       KI
Sbjct: 834 EEFQKRLSDVQKEYKTKRDKETTQITE-TENAKKLEVERKKKLSSLEADQIKAQAEVDKI 892

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKI 820
            + N + +   + D K+ + ++D + K+I
Sbjct: 893 ENSNKLFYWSKDADLKKAQQILDEILKRI 921


>gi|163868609|ref|YP_001609818.1| single-stranded-DNA-specific exonuclease [Bartonella tribocorum CIP
           105476]
 gi|161018265|emb|CAK01823.1| single-stranded-DNA-specific exonuclease [Bartonella tribocorum CIP
           105476]
          Length = 594

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 66/209 (31%), Gaps = 19/209 (9%)

Query: 696 GTHVSSTGE-IMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFLKVS 752
           G HV+ +   + +  +   + I   +       + G R  +     D+ L   A  L   
Sbjct: 268 GLHVARSMHNLGIAALTKVARIGEPLNSFHLGFLLGPRINAGGRIGDQALG--ARLLSCE 325

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELK 810
             +   R+ E  ++  + +    K +L      ++         +S +IS  +     + 
Sbjct: 326 NKDEADRIAEQLDQLNQERQEMEKIQLAQAESYIASLYQDQEPPLSLVISHQEWHPGIIG 385

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
            +   L+++    +  +               +   +   +   L R +  +     GGG
Sbjct: 386 ILASRLKERFFCPVFAIALKEDGNGVG-----SGRSIHGIDLGALVREAVTLNLLEKGGG 440

Query: 871 RPHMAQSGGP-NGNKADQAIAGVASFLKK 898
              MA +G      K          +L++
Sbjct: 441 -HSMA-AGITIQSTKI----EFFRKWLEE 463


>gi|329663311|ref|NP_001193006.1| STE20-like serine/threonine-protein kinase [Bos taurus]
 gi|297490945|ref|XP_002698513.1| PREDICTED: Germinal Center Kinase family member (gck-4)-like [Bos
           taurus]
 gi|296472806|gb|DAA14921.1| Germinal Center Kinase family member (gck-4)-like [Bos taurus]
          Length = 1240

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE      ++L+    KR+ +   +    
Sbjct: 907 DEAKRIKGEQEKELSKFQNMLKNRKKEVINEVERAP---KELRKELMKRRKEELAQSQHA 963

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 964 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 993


>gi|94733094|emb|CAK11287.1| novel protein [Danio rerio]
          Length = 328

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 25/62 (40%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +     L   ++ +  L   ++     +    +++ EE  + ++   K K+Q   +  S 
Sbjct: 50  EEVLERLAQTEQLVVQLKELIREKDSQLASTEKQLKEEKEQAEIKFTKLKMQAKAKMASL 109

Query: 789 HK 790
           +K
Sbjct: 110 NK 111


>gi|242012652|ref|XP_002427043.1| retiin, putative [Pediculus humanus corporis]
 gi|212511291|gb|EEB14305.1| retiin, putative [Pediculus humanus corporis]
          Length = 1640

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +     +  ++E +   +  LK        ++    EE   ++    K   +    + + 
Sbjct: 1135 KELDDKVKKREEMIAGESEKLKNELKETNEKLCRTIEELSSIKQEKNKANEEKAELEKNS 1194

Query: 789  HKIADV--------NFMSHIISEVDS--KELKSVMDALQKK 819
             K+  +          +   +S V+S  K LK  +D L+++
Sbjct: 1195 EKLEKILEEVQGKNKELVVNVSSVESENKILKETIDQLREE 1235



 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 743  KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
            K L   +K  +  + G  E++  E ++      +   +L+      +K  +       + 
Sbjct: 1135 KELDDKVKKREEMIAGESEKLKNELKETNEKLCRTIEELSSIKQEKNKANEEK---AELE 1191

Query: 803  EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            + +S++L+ +++ +Q K +  ++ +  +  E K 
Sbjct: 1192 K-NSEKLEKILEEVQGKNKELVVNVSSVESENKI 1224


>gi|145351438|ref|XP_001420085.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580318|gb|ABO98378.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 549

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           + +RA+     + +  +  A   +V     V R + + EE  +L+   A  K  L+  + 
Sbjct: 168 SSERAKGEAERERKDAQEAAERARVEAEAAVERADRLQEEVERLEQEIAVLKKTLSETNA 227

Query: 787 SCHKIADVN 795
              ++   N
Sbjct: 228 EMEEMKTSN 236


>gi|61965912|ref|YP_214172.1| colicin K activity protein [Escherichia coli]
 gi|1794187|gb|AAB41288.1| colicin K activity protein [Escherichia coli]
 gi|61229210|gb|AAX40978.1| colicin K activity protein [Escherichia coli]
          Length = 548

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 30/167 (17%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDLSCHK 790
            +  +   +  +A  L+ +Q +V  +V       +  +KLQ     ++ + +  +     
Sbjct: 281 DVQSKQATVSRVAGELENAQKSVDVKVTGFPGWRDVQKKLQRQLEAKQAEYSAVENELKN 340

Query: 791 IADVN-FMSHIISEVDSKELKSVMDAL-QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
                   +  + E + K LK   DAL + +I+  +        +        +TE   +
Sbjct: 341 AVSFRDGKAAEVKEAEQK-LKEAQDALEKSQIKDAV--------DTMVGFYQYITEQYGE 391

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           ++    +A+  A+   G                    D+A+A    +
Sbjct: 392 KY--AKIAQDLAEKSKGKK--------------IQGVDEALAAFEKY 422


>gi|220905829|ref|YP_002481140.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|219862440|gb|ACL42779.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 610

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 24/196 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H++  A+  +        G  I  +G  +D  +  P T  +LK+I+  +  II + 
Sbjct: 33  HTASHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDNPDPFTEKDLKAIQKEMVKIIKRK 91

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRV----RVVSVEYEDGGVHSSALCGGTHVSST 702
           LPV+   ++RE+A        +   Y   +    +   +     G     LC G H+ +T
Sbjct: 92  LPVIREEISREEAERR--IKAINEPYKLEILADIQSEPITIYHLGDQWWDLCAGPHLENT 149

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---- 758
           GE+    I  ES   A   R     G   ++ L                +   +      
Sbjct: 150 GELHPDAIALESVAGA-YWR-----GDETKAQLQRIYGTAWE-------TPEQLAEYQRR 196

Query: 759 RVEEIWEEYRKLQLIH 774
           + E    ++RKL    
Sbjct: 197 KEEAQRRDHRKLGKEL 212


>gi|145553100|ref|XP_001462225.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430063|emb|CAK94852.1| unnamed protein product [Paramecium tetraurelia]
          Length = 739

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 16/105 (15%)

Query: 736 MGQDEKLKSLA-------SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             Q ++L S+A          +     +   +E + EE  +L    AK K +++ +D   
Sbjct: 366 QAQLQQLNSIANQNDDDKERYEQEIDELKNEIESLKEEIEELNDQIAKLKRKISEQDDQI 425

Query: 789 --------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                   +KIA +  +  ++++ + K +K     ++K+  S ++
Sbjct: 426 DSQTKTISNKIARIKELEDLLNQKE-KAIKEQEIKIKKQPGSSVV 469


>gi|307182246|gb|EFN69577.1| hypothetical protein EAG_04523 [Camponotus floridanus]
          Length = 458

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 20/117 (17%)

Query: 743 KSLASFLKVSQG--------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           K +++ LKV +         +V  ++E I++ ++ L+ +   + + LN+  L  + I   
Sbjct: 304 KDISNILKVKKEIVEGILKIDVDKKIEVIYDVFKNLKNLQNIKDMFLNIIQLKLNNIKGA 363

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
                II+ +    LK++ D L+      I+  +  ++  +  +L    +  ++RFN
Sbjct: 364 K---QIITNLSPMFLKTIHDFLKD-----IVFKITENENGRIDIL----KGAIERFN 408


>gi|25147368|ref|NP_509204.2| LAMinin related.  See also lmb- family member (lam-2) [Caenorhabditis
            elegans]
 gi|26454641|sp|Q18823|LAM2_CAEEL RecName: Full=Laminin-like protein lam-2; Flags: Precursor
          Length = 1535

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              + A   + G ++  K +A  LK  Q  +   +       R L L   ++K      +L
Sbjct: 1215 ANKEASDAIYGGEQISKQIAE-LKEKQNQLNESIH------RTLDLAEEQKKSADEANNL 1267

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +   ++  N  +  I  VD KEL++ +  + ++ ++ +
Sbjct: 1268 AA--VSLTNVEAVKIPSVDPKELRNDVAGVLEESENLV 1303


>gi|301299299|ref|ZP_07205585.1| chromosome segregation protein SMC [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853143|gb|EFK80741.1| chromosome segregation protein SMC [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 1178

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            S    ++  +      LK+    ++ + E I E  +K Q   AK K +  +   +   I
Sbjct: 809 ISSYKQREAVIIEQLRGLKLQLQELMTQEENISELLKKQQDAIAKIKNKEKIALSAKEDI 868

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            D             + +++ +D+++KK++  
Sbjct: 869 KDKQ-----------EYIRNTIDSIKKKLKDA 889


>gi|227890690|ref|ZP_04008495.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus salivarius ATCC 11741]
 gi|227867628|gb|EEJ75049.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus salivarius ATCC 11741]
          Length = 1178

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            S    ++  +      LK+    ++ + E I E  +K Q   AK K +  +   +   I
Sbjct: 809 ISSYKQREAVIIEQLRGLKLQLQELMTQEENISELLKKQQDAIAKIKNKEKIALSAKEDI 868

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            D             + +++ +D+++KK++  
Sbjct: 869 KDKQ-----------EYIRNTIDSIKKKLKDA 889


>gi|189458793|ref|NP_036148.2| centriolin isoform 1 [Mus musculus]
          Length = 2333

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 54/164 (32%), Gaps = 4/164 (2%)

Query: 652  RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                  +       AL   K  +         E             H +   ++      
Sbjct: 860  EEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHY 919

Query: 712  SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV--VGRVEEIWEEYRK 769
             + ++++ + +I+ +T  + +     ++  L  L    K  + +     +   + EE + 
Sbjct: 920  LQENLKS-MEKIQGLTDLQLQEADEEKERILAQLQELEKKKREDARSQEQFLGLDEELKS 978

Query: 770  LQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
            L+   A   KL      ++  ++  ++     I++  ++EL+  
Sbjct: 979  LKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEA 1022


>gi|187956882|gb|AAI58011.1| Cep110 protein [Mus musculus]
          Length = 2333

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 54/164 (32%), Gaps = 4/164 (2%)

Query: 652  RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                  +       AL   K  +         E             H +   ++      
Sbjct: 860  EEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHY 919

Query: 712  SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV--VGRVEEIWEEYRK 769
             + ++++ + +I+ +T  + +     ++  L  L    K  + +     +   + EE + 
Sbjct: 920  LQENLKS-MEKIQGLTDLQLQEADEEKERILAQLQELEKKKREDARSQEQFLGLDEELKS 978

Query: 770  LQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
            L+   A   KL      ++  ++  ++     I++  ++EL+  
Sbjct: 979  LKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEA 1022


>gi|90961603|ref|YP_535519.1| chromosome partition protein [Lactobacillus salivarius UCC118]
 gi|90820797|gb|ABD99436.1| Chromosome partition protein [Lactobacillus salivarius UCC118]
          Length = 1178

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            S    ++  +      LK+    ++ + E I E  +K Q   AK K +  +   +   I
Sbjct: 809 ISSYKQREAVIIEQLRGLKLQLQELMTQEENISELLKKQQDAIAKIKNKEKIALSAKEDI 868

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            D             + +++ +D+++KK++  
Sbjct: 869 KDKQ-----------EYIRNTIDSIKKKLKDA 889


>gi|34500111|gb|AAQ73640.1| stomatin-like protein [Epichloe festucae]
          Length = 318

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 37/185 (20%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----RVEEIWEEYRKLQLIHAKRKLQL 781
           + G R    ++ + E    +A  ++    +V      +VE +    + +  I ++   + 
Sbjct: 146 VIGARILQDVIERRE---EIAESIREIIEDVAAGWGVQVESML--IKDI--IFSQELQES 198

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML-----VGISKEKKA 836
                   +I +   ++       +K ++   D L       I  L     +  S   K 
Sbjct: 199 LSMAAQSKRIGESKIIAAKAEVESAKLMRQAADILSSAPAMQIRYLEAMQAMAKSANSKV 258

Query: 837 SVLIVVTEDLLDRFNA---VDLARLSAKVLGGGGGGGR-------PHMAQSGGPNGNKAD 886
             L    ++L   FNA    D         G G G GR             GG +     
Sbjct: 259 IFLPGAHQNLQASFNALGSGD-------DNGQGSGVGRNHTGNNFSDF---GGQDP-GLQ 307

Query: 887 QAIAG 891
            AI+ 
Sbjct: 308 TAISA 312


>gi|326926579|ref|XP_003209476.1| PREDICTED: testis-expressed sequence 9 protein-like [Meleagris
           gallopavo]
          Length = 435

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 8/88 (9%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR----KLQLNVE 784
            RA         +L  L    K      +  +EE+  E +KLQ    +     K QL + 
Sbjct: 344 NRALEEAERYKAELNKLKQSYKDVTNQELKTIEELKAENKKLQKQKGELITGFKKQLKLI 403

Query: 785 DLSCHK---IADVNFMSHIISEVDSKEL 809
           D+   +   I     +S    E   K L
Sbjct: 404 DILKRQKMHIEAARMLSFTEEEF-MKAL 430


>gi|148255620|ref|YP_001240205.1| putative methyl-accepting chemotaxis receptor/sensory transducer
           protein [Bradyrhizobium sp. BTAi1]
 gi|146407793|gb|ABQ36299.1| putative methyl-accepting chemotaxis receptor/sensory transducer
           protein [Bradyrhizobium sp. BTAi1]
          Length = 689

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 30/169 (17%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMS 798
           E + +    L  S   +  +V+    E R+     A+    + + D + ++I +V   ++
Sbjct: 470 ETIAAATEELTASVSEIAAQVQASAAEARQAVEKAAQTNATVEMLDRAANRIGEVVKMIT 529

Query: 799 HIISEVDSKELKSVMDALQK-KIQSGIIMLVGISKEKKASVLIVVTEDLL---DRFNA-- 852
            I S+ +   L + ++A +  +   G  ++ G  K   A      T+D+        A  
Sbjct: 530 AIASQTNLLALNATIEAARAGEAGRGFAVVAGEVKNLAAQ-TASATDDITRQIGEIQAAT 588

Query: 853 ---VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              V+  R  +                    N +  D+ +A +A+ +++
Sbjct: 589 GESVEAIRAISH-------------------NISGIDEKMAAIAAAVEQ 618


>gi|74180977|dbj|BAE27768.1| unnamed protein product [Mus musculus]
          Length = 2031

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 19/179 (10%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 1141 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNK 1200

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +V+ +   + + ++K  ++ + 
Sbjct: 1201 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLED-EAKTHEAQIQ 1259

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGG 867
             +++K    +  L    ++ K        +  L++          +LA     +L G G
Sbjct: 1260 EMRQKHSQAVEELADQLEQTKRV------KATLEKAKQTLENERGELANEVKALLQGKG 1312


>gi|312088716|ref|XP_003145968.1| hypothetical protein LOAG_10396 [Loa loa]
 gi|307758869|gb|EFO18103.1| hypothetical protein LOAG_10396 [Loa loa]
          Length = 440

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
             T ++A+  L  +  + +     LK +    + +VE + E  R+      K + +LN  
Sbjct: 1   MTTVKKAKKKLENERAEQEFEMEKLKENAQKTMTKVETLKESCREKDKEIRKLEKKLNQT 60

Query: 785 DLSCH-KIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                  IA++  +          EL++  D L+K  Q 
Sbjct: 61  IEESEINIAEMKKIHKQ----SKDELQNRFDELKKAYQK 95


>gi|6606217|gb|AAF19118.1|AF143462_1 BdrC4 [Borrelia hermsii]
          Length = 173

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 732 RSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
             +L       L+ + + LK    ++  +++ +  E +        +     VE+    K
Sbjct: 44  IEYLETTFNLKLEKVEASLKSDIKDLDNKIDNVRNELKSDIKDLDNKID--TVENNLNIK 101

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           I +V        + D K+L + +D ++ +++S I
Sbjct: 102 IDNVK----NELKSDIKDLDNKIDNVRNELKSDI 131


>gi|28376351|gb|AAO41087.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 867

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G R        +E  + L S L + +   +     V++  E  ++L+     +K QL  +
Sbjct: 293 GLRTLLEQKKAEEIERELKSALGLEKLEKLAELELVKQRLESMKELERELEAKKSQLEKD 352

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSV 812
            L     A V        E D  +L+ +
Sbjct: 353 GLRVELEALVRL------EADVAQLREL 374


>gi|256545559|ref|ZP_05472919.1| hypothetical protein HMPREF0078_1176 [Anaerococcus vaginalis ATCC
           51170]
 gi|256398770|gb|EEU12387.1| hypothetical protein HMPREF0078_1176 [Anaerococcus vaginalis ATCC
           51170]
          Length = 1192

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 45/101 (44%), Gaps = 13/101 (12%)

Query: 735 LMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIHAK--------RKLQLNV 783
           L  ++++LK + + L   K  + ++  ++ ++ ++   L+  + +         K +   
Sbjct: 275 LGEKEQELKEIEANLEATKSDKKSIEDKMSKLQKDIENLKKENEEFSKKLDDLNKEKSQK 334

Query: 784 EDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQS 822
           E+    K   +N     I  +  +++ L+  +D  +K I++
Sbjct: 335 EESKTEKENKLNEDGTKIGNLSKENENLQKTIDEEKKNIEN 375



 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 23/51 (45%)

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           L++L + +K      + ++E++ +E   L+   A +  +L  E      I 
Sbjct: 672 LQNLMNGIKTPSKEDLAKIEQLKKEIDALEKQIAAKNSELEKEKEDLQAIN 722


>gi|188996561|ref|YP_001930812.1| hypothetical protein SYO3AOP1_0621 [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931628|gb|ACD66258.1| hypothetical protein SYO3AOP1_0621 [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 292

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 67/184 (36%), Gaps = 26/184 (14%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +++     +E  +     RIE +T       L  +  +L       +     +  RVE++
Sbjct: 76  QLVETQRQTEEELNKLTGRIEQLT--ERLDQLTERVNQLVEAQRQTEERLNKLTERVEQL 133

Query: 764 WEEYRKL---QLIHAKRKLQLNVE-DLSCHKIADV-----------------NFMSHIIS 802
               ++L   Q    +R +++     L+  ++  +                   +     
Sbjct: 134 TASVKELTENQKKLEERLVKVEEGIKLTRKEVGGLAHTVGYTLEDRAYKSLPKLLKKDFD 193

Query: 803 -EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
            +++ K +++ ++  ++K     I   G  K+K+  V+I   +  L + +     +   +
Sbjct: 194 IDIEGKLIRTYLELGKEKFIEVNIFGKGRQKDKQV-VIIGEGKSQLKKTDVDKFLKTI-E 251

Query: 862 VLGG 865
           ++ G
Sbjct: 252 MIKG 255


>gi|149278765|ref|ZP_01884900.1| DNA repair protein [Pedobacter sp. BAL39]
 gi|149230384|gb|EDM35768.1| DNA repair protein [Pedobacter sp. BAL39]
          Length = 552

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 14/126 (11%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRK 778
           RIE I G+    + +    K+ ++   L   Q  +   + ++    EE  +L    A+ K
Sbjct: 295 RIEEINGRLDVIYSLQTKHKVNNIEELL-AIQEQLSTNLSDLQNSDEEIERLSKEIAQLK 353

Query: 779 --LQLNVEDLSCHKIADV----NFMSHIISEVDSKELKSVMDALQ----KKIQSGIIMLV 828
             L+   E LS ++   +      ++ ++ +V     +  ++ L      K    +I L+
Sbjct: 354 GSLEQQAEKLSANRKKSIAATEKQVAEVLHQVGMPNARIKIEQLALGELNKDGKDLITLL 413

Query: 829 GISKEK 834
             +   
Sbjct: 414 FSANNG 419


>gi|3834625|gb|AAC71031.1| homer-1b [Rattus norvegicus]
 gi|149059039|gb|EDM10046.1| homer homolog 1 (Drosophila), isoform CRA_e [Rattus norvegicus]
          Length = 354

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 61/177 (34%), Gaps = 6/177 (3%)

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
           +        +     +++N    +  P VT+        A  A     +     +    +
Sbjct: 128 SQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPAQNALPFSHSSAISKHWEAEL 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLM 736
            +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     SH  
Sbjct: 188 ATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHSHKT 247

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
              + ++ L   LKV +  +  R+++  +  R+LQ        +L   ++    +  
Sbjct: 248 ELSQTVQELEETLKVKEEEI-ERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLEG 303


>gi|332170931|gb|AEE20186.1| Protein of unknown function DUF2130 [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 411

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQR---ARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           E  L     E  +     +IE  T +        L  +++K K     LK ++ +++ R 
Sbjct: 64  ENELFKAKLEQRLVKEQEKIEKSTQEAFEQQLKSLQLENDKRKEENRALKSAEIDLLKRE 123

Query: 761 EEIWEEYRKLQLIHAK--RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            ++ E+  +LQL   K   + Q  +ED +  K  +  F+     E    + K ++D +++
Sbjct: 124 NQLKEQAEELQLTMQKQLLESQKEIEDKARAKEREAMFLKEKEFEKKLNDQKKLIDEMKR 183

Query: 819 KIQSG 823
           K + G
Sbjct: 184 KAEQG 188


>gi|145528069|ref|XP_001449834.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417423|emb|CAK82437.1| unnamed protein product [Paramecium tetraurelia]
          Length = 742

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              +   ++KL+       +    +   + ++ ++ ++LQ  ++    Q    D   +KI
Sbjct: 392 MQKVSEINQKLQEQVDRRDLENKKLNEEIIQLRDKVKQLQKENSILLSQQQNNDSEMYKI 451

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                       +D+ +LKS ++ L+ +I  
Sbjct: 452 K------LHEMRIDNSDLKSQIEQLKNEISK 476


>gi|123462989|ref|XP_001316891.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121899611|gb|EAY04668.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2832

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKI 791
                 Q +++ +  + LK    ++    E + EE +KL+  +  +  +L  V+  +    
Sbjct: 2187 EIFENQIKEISASLNKLKSENESLEKEKESLTEENKKLKSENQSQSSELEKVKSENTSMK 2246

Query: 792  ADVNFMSHIISEVDSK--ELKSVMDALQKKIQS 822
             +V  +++  SE++ K  +L+  +D L K+   
Sbjct: 2247 NEVEKLANEKSELNKKISDLQEQIDKLTKEKND 2279



 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 726  ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            I    +   +  Q+E L+   + ++        R++++ +E   LQ    + + +     
Sbjct: 1000 IAANSSLKQMTYQNELLQRKQNEMENDLDEKSSRIKDLEDENDDLQKEILELQNENRKIS 1059

Query: 786  LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             +  KI+  N       E++ K++K   ++ ++K+
Sbjct: 1060 SNYEKISKENNRI----EMEMKQIKDENESNKQKL 1090


>gi|171846263|ref|NP_671705.2| homer protein homolog 1 isoform L [Mus musculus]
 gi|38605093|sp|Q9Z2Y3|HOME1_MOUSE RecName: Full=Homer protein homolog 1; Short=Homer-1; AltName:
           Full=VASP/Ena-related gene up-regulated during seizure
           and LTP 1; Short=Vesl-1
 gi|148668619|gb|EDL00938.1| homer homolog 1 (Drosophila), isoform CRA_b [Mus musculus]
          Length = 366

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 714 SSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             +   +  +E ++ Q     SH    ++ ++ L   LKV +  +  R+++  +  R+LQ
Sbjct: 235 ERLHKRVTELECVSSQANAVHSHKTELNQTVQELEETLKVKEEEI-ERLKQEIDNARELQ 293

Query: 772 LIHAKRKLQLNVEDLSCHKIAD 793
                   +L   ++    +  
Sbjct: 294 EQRDSLTQKLQEVEIRNKDLEG 315


>gi|296127837|ref|YP_003635089.1| threonyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296019653|gb|ADG72890.1| threonyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 643

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 83/237 (35%), Gaps = 17/237 (7%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y     +L D    +    +    D +      F    +       T+  L L +   N 
Sbjct: 6   YLGQSYELSDGESLLDFLKQNAKKDSKDAVAAKFNGTEVDLTYTPETDGDLELILTTTNE 65

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
               + HS +HL+  A+  +  +     G  I      +D    KP T  +L  IED + 
Sbjct: 66  GLEVLRHSTSHLMAQAVRRLYPNTQVTIGPAIKDG-FYYDFDAEKPFTEEDLPKIEDEMK 124

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----RVVSVEYEDGGVHSSALCGG 696
            II +N+PVV ++MN+ +A            Y   +       +V + + G     LC G
Sbjct: 125 KIIKENIPVVRKVMNKNEA--IEYFKKANEPYKVEIIEGIDADTVSFYEQGDF-IDLCRG 181

Query: 697 THVSSTGEIMLLYI-------VSESSIRAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
            HV STG I    +           S    + RI       + A    + + ++ K 
Sbjct: 182 PHVPSTGYIKSYKLMSVAGSYWRGDSNNKMLSRIYGTAFESKEALDKYLKRLKEAKE 238


>gi|224124546|ref|XP_002330050.1| predicted protein [Populus trichocarpa]
 gi|222871475|gb|EEF08606.1| predicted protein [Populus trichocarpa]
          Length = 344

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
                +K L +    S      RV  + E+   LQ     R+           +I + + 
Sbjct: 132 QCLALIKELDAK-NSSLKEHEERVTRLGEQLDNLQKDLQARESSQKQLKDEVTRI-EHDI 189

Query: 797 MSHIISEVDSKE--LKSVMDALQ----KKIQSGIIM 826
           M  I    DSK+  L+ ++D +     +K+   +++
Sbjct: 190 MKAISQAGDSKDCELRKLLDEVSPKNFEKMNKLLVV 225


>gi|57640537|ref|YP_183015.1| hypothetical protein TK0602 [Thermococcus kodakarensis KOD1]
 gi|57158861|dbj|BAD84791.1| hypothetical protein, conserved, containing leucine zipper motif
           [Thermococcus kodakarensis KOD1]
          Length = 266

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 732 RSHLMGQDEKLK----SLASFLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            + L  ++E+LK     L S LK       +  ++  +  E R+L+   A    Q N   
Sbjct: 131 YNKLAKENEQLKQQVSELQSKLKNQPNTAELNAKILNLTRENRELKAQLANLTNQYNAVK 190

Query: 786 LSC---HKIADV--NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
                  +  D     +  ++ +   K  +S ++  +K+   G +++  I+
Sbjct: 191 AKADFLEQQNDEYRKMIQTLLEDASQKSEQSYIEKAKKEKLVGSVIIKAIA 241


>gi|328719506|ref|XP_003246780.1| PREDICTED: hypothetical protein LOC100162634 isoform 2 [Acyrthosiphon
            pisum]
          Length = 1783

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 16/106 (15%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNV----------------VGRVEEIWEEYRKLQLIHAK 776
              L  +++ +  L + LK  + N+                   ++ +  +   LQ    K
Sbjct: 1454 RQLEEKEKHVAELDAKLKKRKENLDLLESQINKGKSQAGDSDVIKRLQSQIESLQKELEK 1513

Query: 777  RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             K + +       ++  V  M         K+++ + +AL+     
Sbjct: 1514 SKDEASRSQTDMERLLQVVQMGQEEQNAKEKQIRELQEALKNAQPK 1559


>gi|209526622|ref|ZP_03275147.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209492990|gb|EDZ93320.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 604

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  I+ + 
Sbjct: 32  HTTSHVMAMAVHKLFPKAQVTIGPWI-ENGFYYDFDSPEPFTEQDLKAIKKEMVKILKRK 90

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVR---VVSVEYEDGGVHSSALCGGTHVSSTG 703
           LPV+   ++RE+A        LG  Y   +       +     G     LC G HV +TG
Sbjct: 91  LPVIREEVSREEAQRR--IETLGEPYKLEILADLTEPITIYHLGDQWWDLCAGPHVETTG 148

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           +I     +   S+     R     G   ++ L                +   +      +
Sbjct: 149 DINP-KAIELESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLAEYKRRK 195

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++R+L    
Sbjct: 196 EEALRRDHRRLGKEL 210


>gi|156096292|ref|XP_001614180.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148803054|gb|EDL44453.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1675

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 80/265 (30%), Gaps = 35/265 (13%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                + S  + L+        SH       I       +    K   + E   +    N
Sbjct: 115 NSNQRSRSVLNNLNIFADEGEHSHAYLVNE-IYRLKAEVEEEKQKGCRTNEETKLVKEKN 173

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           D++++++  +   M +   I       +   Y  R+ V   E E+   +           
Sbjct: 174 DLLSKSISDMKVEMEKLQNIYDEEVVKIKESYERRLLVFQAELEEKENYFKKQKEAHRQE 233

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARS------------------HLMGQDEKL 742
              ++     +     R    R E + G+ A                     ++ ++  L
Sbjct: 234 FEAQLEEYKRMYHDEKRKSQER-ERLLGEAAIERERLTKEAAIERERLTKEAVIERERLL 292

Query: 743 -------KSLASFLKVSQGNVVGRVEEIWEEYRKL----QLIHAKRKLQLNVEDLSCHKI 791
                  + L          +  RV+++ E+ + L    +    K +      +    +I
Sbjct: 293 GEATTEREKLTKEAAAQMEELQNRVDQMTEQEKDLTRCFKEEKEKNEQSKTQAEKYQQQI 352

Query: 792 ADVNFMSHIISEVDSKELKSVMDAL 816
            ++N +    +E     +K++++ +
Sbjct: 353 LNLNEIIQKKNE----NIKNMVNDI 373


>gi|145512006|ref|XP_001441925.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409186|emb|CAK74528.1| unnamed protein product [Paramecium tetraurelia]
          Length = 4211

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 12/93 (12%)

Query: 740  EKLKSLASFLKVSQGNVVGRVEEIWEEYR------KLQLIHAKRKLQLNVEDLSCHKIA- 792
            + L +L+  LK      + ++E + ++ +      K + +  K K Q    D S   I+ 
Sbjct: 1144 QDLDNLSGSLKDELKERMQKLENLQQQIKLEGNSQKREKLQLKLKQQYEELDESLDNISE 1203

Query: 793  -----DVNFMSHIISEVDSKELKSVMDALQKKI 820
                 D++ +       D K++K+ +D LQ+ +
Sbjct: 1204 LSDAMDISLLFLKDISKDVKQIKNQIDNLQESL 1236


>gi|123977036|ref|XP_001314794.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121897434|gb|EAY02555.1| hypothetical protein TVAG_116090 [Trichomonas vaginalis G3]
          Length = 1220

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/118 (8%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            ++   +  L++  +  K  +     ++E++ +E    + +    K +    ++S  ++ 
Sbjct: 684 DYINELENVLRTKFNDYKALKEETDKKIEDLEDELEHYKKVLTANKEKAI--EVSAQQLN 741

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           ++  +   +++ +      +++ L+++ +   + +     +     +I  T +L    
Sbjct: 742 EIEKIKTSLTDSE-----ELINKLREEKEKLEVQVENSKND-----IIKATAELRKEL 789


>gi|328778434|ref|XP_003249491.1| PREDICTED: hypothetical protein LOC100578129 [Apis mellifera]
          Length = 1754

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 747  SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
              L+         +E   EE  KL++   ++K+++  + L+  +I ++  ++  ++E++S
Sbjct: 1516 EMLQKQSKERKENIERYKEEIEKLEME-KRKKIEIIEDKLNSEEIKNI-GLNKQLNELNS 1573

Query: 807  KELKSV--MDALQKKIQS 822
            K +  +  +D L++K + 
Sbjct: 1574 KNINLIDELDNLKEKYEE 1591


>gi|261204035|ref|XP_002629231.1| spindle-pole body protein [Ajellomyces dermatitidis SLH14081]
 gi|239587016|gb|EEQ69659.1| spindle-pole body protein [Ajellomyces dermatitidis SLH14081]
          Length = 1236

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
                +   + E LK      K S   +   ++   E+   LQ    + + +       C
Sbjct: 347 NELVENQKEEIENLKEKQQDEKSSVAELEAELQRAKEQLEDLQKSLEEARSEAREAKSKC 406

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +  +    +        K+LK + D +  K
Sbjct: 407 EEAIEEKEQAV-------KDLKELQDEMTDK 430


>gi|149030468|gb|EDL85505.1| synaptonemal complex protein 1, isoform CRA_b [Rattus norvegicus]
          Length = 962

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             Q + L++  + LK    N    +EE+ +E + L+   +    QLN  ++  +K+ 
Sbjct: 578 EKQMKILENKCNNLKKQIENKSKNIEELHQENKALKKKSSAENKQLNAYEIKVNKLE 634


>gi|157112674|ref|XP_001651842.1| paraflagellar rod protein, putative [Aedes aegypti]
 gi|108877983|gb|EAT42208.1| paraflagellar rod protein, putative [Aedes aegypti]
          Length = 1112

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 37/158 (23%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF---LKVSQGNVVGRV 760
           E++   +  E+SI    +R+E ++ +  +  L   +   K LA     LK     V  + 
Sbjct: 281 EMITEKVALETSIVDKQKRLE-VSNRDLQDRLQEAESTTKQLAEMIEQLKADSAQVAAKF 339

Query: 761 EEIWEEYRK----------LQLIHAKRKLQLNVEDLSCHKI--------ADVNFMSHIIS 802
            +  E+ +K          LQ   +K +  L+ ++    ++        A++  +   + 
Sbjct: 340 VDFKEQNKKEFADDKNREELQSSLSKAEHALSSKENELQQVQAQDEALKAEIKNLQKHLQ 399

Query: 803 EVDSK-------------ELKSVMDALQKKIQSGIIML 827
            V SK             ELK + + L+++   G+I L
Sbjct: 400 TVQSKLELVKLENSDLLSELKEINEILKER--GGVISL 435


>gi|293347018|ref|XP_001057458.2| PREDICTED: retinoic acid induced 14-like isoform 1 [Rattus
            norvegicus]
          Length = 1675

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQG---NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   + L  L S L+ +Q      V R E++ +  +KL+L ++K K+ +  +     
Sbjct: 1220 EEARDLKKNLSQLRSQLQEAQDQHREAVQRAEKMQDHLQKLELENSKFKITIKTQSEEIE 1279

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++ + N  +  +SE D ++LK +   L++ ++
Sbjct: 1280 QLQE-NLSNGNLSEEDQEKLKKL-TELKESLE 1309


>gi|209560015|ref|YP_002286487.1| Prophage NZ131.3 probable integrase [Streptococcus phage NZ131.3]
 gi|209541216|gb|ACI61792.1| Prophage NZ131.3 probable integrase [Streptococcus phage NZ131.3]
          Length = 378

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 710 IVSESSIRAGIRRIEAI----TGQRARSHLM----------GQDEKLKSLAS-FLKVSQG 754
           +  E      I+ IE      TG+R R+++                L  +    +K S  
Sbjct: 1   MWHEKQANGNIKFIEYYKDPYTGKRQRAYVTLDRYTKQSETKARRLLNEIIEYRIKSSGD 60

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
             V R  ++ EE++       K +  + V      KI D      ++  +D++ L+  +D
Sbjct: 61  QFV-RFGQLVEEWKTSHSKTVKART-MKVYRHPIEKIKDFIGDDVLVKNIDARLLQKFID 118

Query: 815 ALQKKIQSGIIMLV 828
            L+ +     I L+
Sbjct: 119 YLKDRYSDNTINLI 132


>gi|3041729|sp|Q03410|SYCP1_RAT RecName: Full=Synaptonemal complex protein 1; Short=SCP-1
          Length = 997

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             Q + L++  + LK    N    +EE+ +E + L+   +    QLN  ++  +K+ 
Sbjct: 613 EKQMKILENKCNNLKKQIENKSKNIEELHQENKALKKKSSAENKQLNAYEIKVNKLE 669


>gi|119025862|ref|YP_909707.1| hypothetical protein BAD_0844 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765446|dbj|BAF39625.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 498

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 28/129 (21%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV---------------GRVEEIW 764
           + R+ A    RA   L   ++  K+L+        +++                R+  + 
Sbjct: 103 LYRLTARA-HRAIEALDRLEDTTKALS---GAQANSIIMEIEHARMQLTVDPRERIRLLE 158

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVM-------DAL 816
            +  + Q    + K    ++ L+  ++ D+  + H  +  V   +L+ +        D L
Sbjct: 159 RDIEERQKQIDELKHSDTLDRLTSQQVGDIIGVIHNTLRGVPI-DLRELALEERDNGDNL 217

Query: 817 QKKIQSGII 825
           ++ +QSG I
Sbjct: 218 RRSMQSGSI 226


>gi|309390181|gb|ADO78061.1| uncharacterized protein with myosin-like domain [Halanaerobium
           praevalens DSM 2228]
          Length = 427

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 41/133 (30%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
                  K LA   K ++  +  R+E +  + + L+   ++ + Q  + DL         
Sbjct: 148 QELLAVEKELAELTK-NRDQLEQRIENLSSQRQDLEEQVSELQAQ--ISDLEA------- 197

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
                    D  +L+ V + L+                  A V+  + ED++  +   D+
Sbjct: 198 ---------DYDDLRQVAEQLR------------------AGVIYYMDEDIV--YQKGDV 228

Query: 856 ARLSAKVLGGGGG 868
               + VL GG G
Sbjct: 229 V--YSDVLEGGRG 239


>gi|242786990|ref|XP_002480914.1| hypothetical protein TSTA_037010 [Talaromyces stipitatus ATCC
           10500]
 gi|218721061|gb|EED20480.1| hypothetical protein TSTA_037010 [Talaromyces stipitatus ATCC
           10500]
          Length = 295

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  ++++L   +  LK  +  +    E++ ++  +LQ    + +           ++
Sbjct: 153 YEALEQENKRLNQESHQLKKGKEQLQKDKEQLQKDKEQLQKDKEQLQKDKEQLQKDKKQL 212

Query: 792 A-DVNFMSHIISE 803
              + ++   I E
Sbjct: 213 QLQIQYLRRQIDE 225


>gi|190406122|gb|EDV09389.1| structural maintenance of chromosome 4 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 1418

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHK 790
             L  +   L  +   LK    ++   +    +E     LQL   + ++QL   +LS  +
Sbjct: 524 QLLEKERSILDDIKLSLKDKTKDISAEIIRHEKELEPWDLQLQEKESQIQLAESELSLLE 583

Query: 791 IADVNFMSHIISEVDSK---------ELKSVMDALQKKIQS 822
                 +   +  ++ K         EL+ ++  L+KK+ S
Sbjct: 584 ETQAK-LKKNVETLEEKILAKKTHKQELQDLILDLKKKLNS 623


>gi|160901877|ref|YP_001567458.1| flagellar hook-associated protein FlgK [Petrotoga mobilis SJ95]
 gi|160359521|gb|ABX31135.1| flagellar hook-associated protein FlgK [Petrotoga mobilis SJ95]
          Length = 818

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN------VVGRVEE 762
            +    +I + +  IE + G+   + L    +   +    LK    N      VV R EE
Sbjct: 93  RLNYWENIYSNVHYIEQLFGEPGETGLRNMYDSYWASIEELKTDPSNEAAKTQVVSRAEE 152

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           +    + L     + K  +N E     +I ++N     I++++ K L
Sbjct: 153 LVNTMKDLNYRLEELKNDINSEIKL--RIDEINGYLKRIADLNQKIL 197


>gi|109948238|ref|YP_665466.1| DNA repair protein RecN [Helicobacter acinonychis str. Sheeba]
 gi|109715459|emb|CAK00467.1| DNA repair protein RecN [Helicobacter acinonychis str. Sheeba]
          Length = 524

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 97/292 (33%), Gaps = 50/292 (17%)

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  E  ++ +     + +   +    +  +  I SG     G+  + + R+  ++ E   
Sbjct: 258 TLMETSALLEKEQAKLEECEHLDIEKVLEKLGIISGIIKDYGSITHAKERLNHIKNELHN 317

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +        TH     ++    +     I   + R E + G  A      +D  LKS + 
Sbjct: 318 LEEIDNHCETHHKEIEQLKAECLKLSEQIS--VFRKEHLAGFNALLSAKAKDLLLKSPSL 375

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKR----KLQLNVEDLSCHKIADVNFMSHIISE 803
            L+ +  N     +++    +  QL         +L+L    L    + D   +  ++ E
Sbjct: 376 ILEEAPMN-SKGAQKLILNLQNSQLETLSSGEYSRLRLAFMLLEMEFLKDFKGV-LVLDE 433

Query: 804 VDS-----------KELKSV-----MDALQKKIQSGIIMLVGISKEKKASVLIV--VTED 845
           +DS           K L+++     + A+  ++    +         K  +L+     + 
Sbjct: 434 MDSNLSGEESLAVSKALETLSSHSQIFAISHQVHIPAVA--------KNHILVFKENHKS 485

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L    N+ +     A+++GG                    + AI+     LK
Sbjct: 486 LAKTLNSEERVLEIARMIGG----------------SENIESAISFAKEKLK 521


>gi|42520545|ref|NP_966460.1| hypothetical protein WD0697 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410284|gb|AAS14394.1| hypothetical protein WD_0697 [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 142

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 735 LMGQDEKLKS----LASFLKVSQ---GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           L  +++KL      ++  LK        +   ++++ EE ++L+    K           
Sbjct: 22  LRQENKKLTRDKLTISEQLKQKIREIDELKKNLKQLQEENKQLKQEVTKNAGVDASSSTG 81

Query: 788 CHKIADVNFMSHIISE 803
             +  +   +   I +
Sbjct: 82  QKEAKEAKVIPQNIMD 97


>gi|16264703|ref|NP_437495.1| putative sugar uptake ABC transporter periplasmic solute-binding
           protein precursor [Sinorhizobium meliloti 1021]
 gi|307303447|ref|ZP_07583201.1| periplasmic binding protein/LacI transcriptional regulator
           [Sinorhizobium meliloti BL225C]
 gi|307318703|ref|ZP_07598136.1| periplasmic binding protein/LacI transcriptional regulator
           [Sinorhizobium meliloti AK83]
 gi|15140841|emb|CAC49355.1| ABC transporter, periplasmic solute-binding protein [Sinorhizobium
           meliloti 1021]
 gi|306895730|gb|EFN26483.1| periplasmic binding protein/LacI transcriptional regulator
           [Sinorhizobium meliloti AK83]
 gi|306902838|gb|EFN33430.1| periplasmic binding protein/LacI transcriptional regulator
           [Sinorhizobium meliloti BL225C]
          Length = 296

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 17/133 (12%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L  Q      LA  +K           E  E+   L++  A + L   + D+    +  V
Sbjct: 33  LTQQHPFYIELAEAMKA----------EAKEKNVALEVAIANQDLNKQLADVEDFIVKGV 82

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
           + +  +IS VDS+ +++ +    +K    +I +   +     +  I  T++      A +
Sbjct: 83  DVI--VISPVDSQGVRAAIAK-AEKAGIKVITVDVPANGATVTSHIG-TDNFTGGVKAGE 138

Query: 855 LARLSAKVLGGGG 867
           L    A+VLG  G
Sbjct: 139 LM---AEVLGNKG 148


>gi|323462178|ref|NP_084276.2| centriolin isoform 2 [Mus musculus]
          Length = 1780

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 54/164 (32%), Gaps = 4/164 (2%)

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                 +       AL   K  +         E             H +   ++      
Sbjct: 307 EEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHY 366

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV--VGRVEEIWEEYRK 769
            + ++++ + +I+ +T  + +     ++  L  L    K  + +     +   + EE + 
Sbjct: 367 LQENLKS-MEKIQGLTDLQLQEADEEKERILAQLQELEKKKREDARSQEQFLGLDEELKS 425

Query: 770 LQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
           L+   A   KL      ++  ++  ++     I++  ++EL+  
Sbjct: 426 LKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEA 469


>gi|323347562|gb|EGA81830.1| Smc4p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1418

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHK 790
             L  +   L  +   LK    ++   +    +E     LQL   + ++QL   +LS  +
Sbjct: 524 QLLEKERSILDDIKLSLKDKTKDISAEIIRHEKELEPWDLQLQEKESQIQLAESELSLLE 583

Query: 791 IADVNFMSHIISEVDSK---------ELKSVMDALQKKIQS 822
                 +   +  ++ K         EL+ ++  L+KK+ S
Sbjct: 584 ETQAK-LKKNVETLEEKILAKKTHKQELQDLILDLKKKLNS 623


>gi|313234685|emb|CBY10638.1| unnamed protein product [Oikopleura dioica]
          Length = 359

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-D 793
           L  + EKL+ L   LK+ + N+V + +++ +  + +Q      K ++        K+  +
Sbjct: 145 LSQRREKLEELHGKLKIRKENLVEKEKKLRDFEKSVQEKENLIKTKMAAIKARDDKLNAE 204

Query: 794 VNFMSHIISEVDSKE 808
           +  +    +++DSK+
Sbjct: 205 LKRLEKQEADLDSKQ 219


>gi|297708729|ref|XP_002831109.1| PREDICTED: LOW QUALITY PROTEIN: myosin-9-like [Pongo abelii]
          Length = 1960

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 1070 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNK 1129

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +VN +   + E ++K  ++ + 
Sbjct: 1130 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQ 1188

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGGG 868
             +++K    +  L    ++ K        +  L++          +LA    KVL  G G
Sbjct: 1189 EMRQKHSQAVEELAEQLEQTKRV------KANLEKAKQTLENERGELANEV-KVLLQGKG 1241


>gi|289191732|ref|YP_003457673.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus sp. FS406-22]
 gi|288938182|gb|ADC68937.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus sp. FS406-22]
          Length = 631

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 755 NVVGRVEEIWEEYRK-----LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           +V   ++ + EE +K     LQ+       +LN    S   ++D   ++  I   +  +L
Sbjct: 30  SVENTIQTMDEEAQKKINTDLQIAEYILNQRLNFLSKSLELVSDN--IALSIKSKNLSDL 87

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           K++   L+    S  +++    K+ K   L     +     +   + +   KVL GG
Sbjct: 88  KTIALNLKNTTNSDFVIIF--DKDGKV--LASSNNNKTGYIDLKHIIK---KVLSGG 137


>gi|254411303|ref|ZP_05025080.1| threonyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196181804|gb|EDX76791.1| threonyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 609

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 19/193 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  I+ + 
Sbjct: 34  HTASHVMAMAVQKLFPGTQVTIGPWI-ENGFYYDFAKPEPFTEQDLKAIKKEMVKILKRK 92

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVSSTG 703
           LP++   ++RE+A        LG  Y   +       +     G     LC G HV +T 
Sbjct: 93  LPLIREEVSREEAERR--IKELGEPYKLEILQDLEDPITLYHLGEDWWDLCAGPHVETTA 150

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I     +   S+     R     G  +++ L                +   +       
Sbjct: 151 DIHP-KAIDLESVAGAYWR-----GDASKAQLQRIYGTAWE-------TPEQLTEYKRRK 197

Query: 764 WEEYRKLQLIHAK 776
            E  ++      K
Sbjct: 198 QEALKRDHRKLGK 210


>gi|167390555|ref|XP_001739402.1| myosin-2 heavy chain, non muscle [Entamoeba dispar SAW760]
 gi|165896924|gb|EDR24218.1| myosin-2 heavy chain, non muscle, putative [Entamoeba dispar SAW760]
          Length = 2151

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             +A      Q+ +L++    LK    ++  ++E    E +KL+    + +   +  D + 
Sbjct: 1590 NKALEMKGDQNNQLQATNKELKAKNNDLTSKIEIAENEMKKLENAKKRLEQDKDEADKAV 1649

Query: 789  HK 790
             +
Sbjct: 1650 SE 1651


>gi|149030467|gb|EDL85504.1| synaptonemal complex protein 1, isoform CRA_a [Rattus norvegicus]
          Length = 997

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             Q + L++  + LK    N    +EE+ +E + L+   +    QLN  ++  +K+ 
Sbjct: 613 EKQMKILENKCNNLKKQIENKSKNIEELHQENKALKKKSSAENKQLNAYEIKVNKLE 669


>gi|294791999|ref|ZP_06757147.1| MutS2 protein [Veillonella sp. 6_1_27]
 gi|294457229|gb|EFG25591.1| MutS2 protein [Veillonella sp. 6_1_27]
          Length = 792

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNV------VGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +   S L  Q  K       LK            + + ++ + E RK  L  A+   +  
Sbjct: 516 EEVLSDLNEQLRKASERERALKKELDETGRMRGQLEKEKKQFNENRKQILAKAQADAESM 575

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
              L     A +  +    SE +   L+S ++A +K I S  +    +  ++K      +
Sbjct: 576 KRSLRVEGEAIIKQLKAQFSETNKDRLQSAINAARKGISSVHVPEAAVDDDRK-----SL 630

Query: 843 TEDLLDRFNAV 853
           T D +    AV
Sbjct: 631 TADAIKVGQAV 641


>gi|294793864|ref|ZP_06759001.1| MutS2 protein [Veillonella sp. 3_1_44]
 gi|294455434|gb|EFG23806.1| MutS2 protein [Veillonella sp. 3_1_44]
          Length = 792

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNV------VGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +   S L  Q  K       LK            + + ++ + E RK  L  A+   +  
Sbjct: 516 EEVLSDLNEQLRKASERERALKKELDETRRMRGQLEKEKKQFNENRKQILAKAQADAESM 575

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
              L     A +  +    SE +   L+S ++A +K I S  +    +  ++K      +
Sbjct: 576 KRSLRVEGEAIIKQLKAQFSETNKDRLQSAINAARKGISSVHVPEAAVDDDRK-----SL 630

Query: 843 TEDLLDRFNAV 853
           T D +    AV
Sbjct: 631 TADAIKVGQAV 641


>gi|293358899|ref|XP_232319.5| PREDICTED: ankyrin repeat domain 26 isoform 2 [Rattus norvegicus]
          Length = 1675

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQG---NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   + L  L S L+ +Q      V R E++ +  +KL+L ++K K+ +  +     
Sbjct: 1220 EEARDLKKNLSQLRSQLQEAQDQHREAVQRAEKMQDHLQKLELENSKFKITIKTQSEEIE 1279

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++ + N  +  +SE D ++LK +   L++ ++
Sbjct: 1280 QLQE-NLSNGNLSEEDQEKLKKL-TELKESLE 1309


>gi|227826811|ref|YP_002828590.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus M.14.25]
 gi|229583993|ref|YP_002842494.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus M.16.27]
 gi|238618935|ref|YP_002913760.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus M.16.4]
 gi|227458606|gb|ACP37292.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus M.14.25]
 gi|228019042|gb|ACP54449.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus M.16.27]
 gi|238380004|gb|ACR41092.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus M.16.4]
          Length = 150

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+A H++  A+  +LG+      + +  +  R  V   +  +  E+  + +  N+ +
Sbjct: 6   IRTHTALHVVKGAVRKVLGAK-WTASTYVNSNHGRLTVKFERKPSDEEMDKVFELANEKV 64

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +NLP++  ++ RE+A       +         VR +S+        +   C   H  +T
Sbjct: 65  RKNLPIIIEVLPREEAERKYGDEIYDLFLIPAEVRELSIVVIP--DWNINACNKQHTKTT 122

Query: 703 GEIMLLYIVSE 713
            EI  +     
Sbjct: 123 SEIGEIIKDYW 133


>gi|224049840|ref|XP_002193642.1| PREDICTED: similar to mitochondrial tumor suppressor 1 isoform 2
           [Taeniopygia guttata]
          Length = 522

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK------LQLNVEDL 786
                + E L+     LK    ++  +++   EE +++    A  K      L+  +E L
Sbjct: 337 DSFKEKQELLEKKIDELKSENNSLSEKLK--LEEQKQIAKEKANLKNPQIMYLEQELESL 394

Query: 787 SCH-KIADVNFMSHIISEVDSKELKS----VMDALQK 818
               +I +       I  +  ++L      +MD L+K
Sbjct: 395 KAVLEIKNEKLHQQDIKLMKMEKLVENNTILMDKLKK 431


>gi|238486550|ref|XP_002374513.1| eukaryotic translation initiation factor 3 subunit EifCa, putative
           [Aspergillus flavus NRRL3357]
 gi|220699392|gb|EED55731.1| eukaryotic translation initiation factor 3 subunit EifCa, putative
           [Aspergillus flavus NRRL3357]
          Length = 1047

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RR+     + A +  + + ++ +     ++  Q     + + + +E R+ +    K    
Sbjct: 616 RRVIIDKKKEAATDALQRKQREEETRKRIRTQQLQEAEK-QRLLDEQREREKKRIKDEQD 674

Query: 777 ----RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
               ++L+  +E+L    +  ++     + ++D+  L+++
Sbjct: 675 RIREQELKKQIEELKSG-VKGIDLSEVDLKDLDANRLRAM 713


>gi|293347020|ref|XP_002726477.1| PREDICTED: retinoic acid induced 14-like isoform 2 [Rattus
            norvegicus]
 gi|149049620|gb|EDM02074.1| similar to KIAA1074 protein (predicted) [Rattus norvegicus]
          Length = 1532

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQG---NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   + L  L S L+ +Q      V R E++ +  +KL+L ++K K+ +  +     
Sbjct: 1077 EEARDLKKNLSQLRSQLQEAQDQHREAVQRAEKMQDHLQKLELENSKFKITIKTQSEEIE 1136

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++ + N  +  +SE D ++LK +   L++ ++
Sbjct: 1137 QLQE-NLSNGNLSEEDQEKLKKL-TELKESLE 1166


>gi|169770963|ref|XP_001819951.1| eukaryotic translation initiation factor 3 subunit A [Aspergillus
           oryzae RIB40]
 gi|121803856|sp|Q2UKG6|EIF3A_ASPOR RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 110 kDa subunit homolog; Short=eIF3
           p110; AltName: Full=Translation initiation factor eIF3,
           p110 subunit homolog
 gi|83767810|dbj|BAE57949.1| unnamed protein product [Aspergillus oryzae]
          Length = 1038

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RR+     + A +  + + ++ +     ++  Q     + + + +E R+ +    K    
Sbjct: 607 RRVIIDKKKEAATDALQRKQREEETRKRIRTQQLQEAEK-QRLLDEQREREKKRIKDEQD 665

Query: 777 ----RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
               ++L+  +E+L    +  ++     + ++D+  L+++
Sbjct: 666 RIREQELKKQIEELKSG-VKGIDLSEVDLKDLDANRLRAM 704


>gi|297206982|gb|AAC48152.3| Laminin related. see also lmb- protein 2, partially confirmed by
            transcript evidence [Caenorhabditis elegans]
          Length = 1633

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              + A   + G ++  K +A  LK  Q  +   +       R L L   ++K      +L
Sbjct: 1230 ANKEASDAIYGGEQISKQIAE-LKEKQNQLNESIH------RTLDLAEEQKKSADEANNL 1282

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +   ++  N  +  I  VD KEL++ +  + ++ ++ +
Sbjct: 1283 AA--VSLTNVEAVKIPSVDPKELRNDVAGVLEESENLV 1318


>gi|269963757|ref|ZP_06178075.1| hypothetical protein VME_44590 [Vibrio harveyi 1DA3]
 gi|269831490|gb|EEZ85631.1| hypothetical protein VME_44590 [Vibrio harveyi 1DA3]
          Length = 214

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 72/225 (32%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+           +  +++ FYAE+GGQ  D G   G  +             +      
Sbjct: 14  ELESTVSRVDGRCIELEESIFYAESGGQESDAGTIGGIQVIKAEKQGLSIVYTL------ 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 +    +   ID+  R  L   H A  ++   ++      +++ G+ I+ D  R 
Sbjct: 68  EREPKFQAGAVVTTQIDWARRYALMKLHFAAEVILEVVTHRFP-EMNKVGAHISADKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D    + I    L+  +                         +   +        R R  
Sbjct: 127 DFEWHESIKPLLLELQQQA----------------QSVIDSHADIISDFSDTSEQR-RYW 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            VE       +   CGGTH+ +T E+  + +    +I  G  RIE
Sbjct: 170 KVEGF-----AQVPCGGTHLKNTSEVGRIQLKR-KNIGKGKERIE 208


>gi|151941253|gb|EDN59631.1| structural maintenance of chromosomes [Saccharomyces cerevisiae
           YJM789]
          Length = 1418

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHK 790
             L  +   L  +   LK    ++   +    +E     LQL   + ++QL   +LS  +
Sbjct: 524 QLLEKERSILDDIKLSLKDKTKDISAEIIRHEKELEPWDLQLQEKESQIQLAESELSLLE 583

Query: 791 IADVNFMSHIISEVDSK---------ELKSVMDALQKKIQS 822
                 +   +  ++ K         EL+ ++  L+KK+ S
Sbjct: 584 ETQAK-LKKNVETLEEKILAKKTHKQELQDLILDLKKKLNS 623


>gi|149634496|ref|XP_001509968.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 465

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 5/118 (4%)

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVS 752
            HV +  ++    +V+         + E +    +   L  Q    +++LK   + +   
Sbjct: 299 EHVMNEVDVNKDRLVTLEEFMRATEKKEFL-EPESWETLDQQQLFTEDELKEYENHISQQ 357

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           +  +  + EE+ ++  +LQ  H + + Q         ++        I     + ELK
Sbjct: 358 ENELKKKAEELQKQKEELQRQHDQLQAQKQEYHQVVQQMEQKKLQQGIPPSGPAGELK 415


>gi|227500700|ref|ZP_03930749.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217158|gb|EEI82507.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 398

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 20/135 (14%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + A  +L    + + +    LK  Q  V  +V++I EE  KL     + KL   +   + 
Sbjct: 145 KEATKNLNQAQQTVINARVQLKKQQDAVNTKVDKIKEELGKLGKKVDEAKLNDILALFNN 204

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
            K+        ++ +  +          + K +    +L       KA        +  +
Sbjct: 205 DKVK-------VLEDKTAPATPEASKPAKNKAE----VLARAE---KAY------AEARE 244

Query: 849 RFNAVDLARLSAKVL 863
              AV++ + +A  +
Sbjct: 245 TAKAVEILKEAAPAV 259


>gi|12667788|ref|NP_002464.1| myosin-9 [Homo sapiens]
 gi|6166599|sp|P35579|MYH9_HUMAN RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain,
            type A; AltName: Full=Myosin heavy chain 9; AltName:
            Full=Myosin heavy chain, non-muscle IIa; AltName:
            Full=Non-muscle myosin heavy chain A; Short=NMMHC-A;
            AltName: Full=Non-muscle myosin heavy chain IIa;
            Short=NMMHC II-a; Short=NMMHC-IIA
 gi|3169000|emb|CAB05105.1| myosin, heavy chain 9, non-muscle [Homo sapiens]
 gi|47678583|emb|CAG30412.1| MYH9 [Homo sapiens]
 gi|53791227|dbj|BAD52439.1| non-muscle myosin heavy polypeptide 9 [Homo sapiens]
 gi|109451392|emb|CAK54557.1| MYH9 [synthetic construct]
 gi|109451988|emb|CAK54856.1| MYH9 [synthetic construct]
 gi|119580500|gb|EAW60096.1| myosin, heavy polypeptide 9, non-muscle, isoform CRA_a [Homo sapiens]
 gi|119580502|gb|EAW60098.1| myosin, heavy polypeptide 9, non-muscle, isoform CRA_a [Homo sapiens]
 gi|152012654|gb|AAI50170.1| Myosin, heavy chain 9, non-muscle [synthetic construct]
 gi|152012993|gb|AAI50171.1| Myosin, heavy chain 9, non-muscle [synthetic construct]
 gi|166788562|dbj|BAG06729.1| MYH9 variant protein [Homo sapiens]
 gi|168270842|dbj|BAG10214.1| myosin-9 [synthetic construct]
          Length = 1960

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 1070 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNK 1129

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +VN +   + E ++K  ++ + 
Sbjct: 1130 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQ 1188

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGGG 868
             +++K    +  L    ++ K        +  L++          +LA    KVL  G G
Sbjct: 1189 EMRQKHSQAVEELAEQLEQTKRV------KANLEKAKQTLENERGELANEV-KVLLQGKG 1241


>gi|86137916|ref|ZP_01056492.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           MED193]
 gi|85825508|gb|EAQ45707.1| single-stranded-DNA-specific exonuclease RecJ [Roseobacter sp.
           MED193]
          Length = 581

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 16/145 (11%)

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +  R++++  E R ++       ++            D   +           +  V   
Sbjct: 324 LAERLDQLNTERRDIENAVRAAAMEQAEARGF-----DAPLVWAAGEGWHPGVVGIVASR 378

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV-DLARLSAKVLGGGGGGGRPHM 874
           L++      +++   + E K S     +   +   +    + R +A+ L   GGG +  M
Sbjct: 379 LKEAAGRPAVVIGLHNGEGKGS---GRS---VSGIDLGIAIQRTAAEGLLIKGGGHK--M 430

Query: 875 AQSGGPNGN-KADQAIAGVASFLKK 898
           A +G      K + A+  +   L K
Sbjct: 431 A-AGLTVAEDKLEAAMERLGDLLAK 454


>gi|302762258|ref|XP_002964551.1| hypothetical protein SELMODRAFT_405879 [Selaginella moellendorffii]
 gi|300168280|gb|EFJ34884.1| hypothetical protein SELMODRAFT_405879 [Selaginella moellendorffii]
          Length = 533

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKE 808
           K  + NVV ++  + +E +  +   AK K +L + +      + + N +  + S      
Sbjct: 77  KAPKPNVVEKLAAVEQELKTAKNEIAKLKTELALSEEKWLQAVKEGNEIKKMAS------ 130

Query: 809 LKSVMDALQKKIQSGIIML 827
              + + +  K+ + +I +
Sbjct: 131 --EMANEMANKLDAAMIAV 147


>gi|167762539|ref|ZP_02434666.1| hypothetical protein BACSTE_00895 [Bacteroides stercoris ATCC
           43183]
 gi|167699645|gb|EDS16224.1| hypothetical protein BACSTE_00895 [Bacteroides stercoris ATCC
           43183]
          Length = 845

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 51/162 (31%), Gaps = 29/162 (17%)

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL------------KVS 752
           +      +E  ++    RIE     RA      + EK + +   L            K  
Sbjct: 583 LQKAKEEAEQLMQEANARIENT--IRAIKEAQAEKEKTRQIRQELNDFRESLDTLTAKEQ 640

Query: 753 QGNVVGRVEEIWE-EYRKLQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKEL 809
           +  +  ++E++ E + RK +    K +           +    +   ++ I+     K  
Sbjct: 641 EEKIARKIEKLKEKQNRKKEKKANKNQENTLSAQALAEQQAKKEAERLAAIVPGSYVK-- 698

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
                 ++ +   G ++        K +++   +     + +
Sbjct: 699 ------IKGQTSVGEVL----EINGKKAIVAFGSIKTTVKLD 730


>gi|167763629|ref|ZP_02435756.1| hypothetical protein BACSTE_02004 [Bacteroides stercoris ATCC
           43183]
 gi|167698923|gb|EDS15502.1| hypothetical protein BACSTE_02004 [Bacteroides stercoris ATCC
           43183]
          Length = 441

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI----- 791
             + +LK L   L+ ++  +  ++ ++ ++ ++LQ           + D    +      
Sbjct: 51  DCEAQLKELREALETAKAELQNKINDLNDKIKELQEQIDNLTGNQGITDEELAEKLTELE 110

Query: 792 ADVNFMSHIIS-EVDSKE--LKSVMDALQKKIQS 822
                + + +   + SK   L+S +D LQ +I  
Sbjct: 111 NKFQGLLNEVEQNLSSKIDKLQSQIDKLQSQIDK 144


>gi|2462783|gb|AAB71984.1| M-protein [Streptococcus equi]
          Length = 534

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 26/161 (16%)

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
             LL    E  I  G R   A   +   + +  Q E L+   S L+  +      + +  
Sbjct: 127 ASLLVDEIEKRIADGDR--YAKLLEAKLAAIKSQQEMLRERDSQLRNLEKEKEQELTKAK 184

Query: 765 EEYRKLQ-----------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
           +E + L              + K K +L  E     K+     ++  +S  ++   K+  
Sbjct: 185 DERQALTESFNKTLSRSTKEYNKLKTELAKEKEKAAKM--TKELADKLSNAEASRDKAFA 242

Query: 814 --DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
               L  K+ S        +   KA     V++DL D+  A
Sbjct: 243 VSKDLADKLSS------AEASRDKAF---AVSKDLADKLAA 274


>gi|68492200|ref|XP_710120.1| likely vesicular transport factor Uso1p [Candida albicans SC5314]
 gi|46431250|gb|EAK90848.1| likely vesicular transport factor Uso1p [Candida albicans SC5314]
          Length = 1880

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 52/127 (40%), Gaps = 16/127 (12%)

Query: 723  IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----------QL 772
            ++ ++G ++   L    +K   ++  LK     +  + ++  +  +KL          + 
Sbjct: 1746 LQFLSGNKS-KELEDYIQKHSDISEKLKALTDELKEKTKQFDDSKKKLTELENDLTSTKK 1804

Query: 773  IHAKRKLQ----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                 K Q     N+E+    +I  +N    ++   +S   K + + +  K++S I +L 
Sbjct: 1805 ELETEKTQTSKFKNLEERKDKEIVKLNKELELLKNDNSGAKKELSEKV-SKLESEIEILS 1863

Query: 829  GISKEKK 835
               ++KK
Sbjct: 1864 KKLEDKK 1870


>gi|293358901|ref|XP_002729465.1| PREDICTED: ankyrin repeat domain 26 isoform 1 [Rattus norvegicus]
          Length = 1532

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 733  SHLMGQDEKLKSLASFLKVSQG---NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
                   + L  L S L+ +Q      V R E++ +  +KL+L ++K K+ +  +     
Sbjct: 1077 EEARDLKKNLSQLRSQLQEAQDQHREAVQRAEKMQDHLQKLELENSKFKITIKTQSEEIE 1136

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++ + N  +  +SE D ++LK +   L++ ++
Sbjct: 1137 QLQE-NLSNGNLSEEDQEKLKKL-TELKESLE 1166


>gi|270006136|gb|EFA02584.1| hypothetical protein TcasGA2_TC008303 [Tribolium castaneum]
          Length = 844

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIW--EEYRKLQLIHAKRKLQLN--------VEDLS 787
           + +  + LA+FLK     +  R + +   +E +KL+ + +  K ++N          +  
Sbjct: 385 KMKVYEHLATFLKCKTETLTRRAKSLVLDDEQKKLKNLLSGLKSEINNIMPSLLESYEKE 444

Query: 788 CHKIADVNFMSHIISEVDSKEL-----KSVMDALQKKIQSGIIML 827
             +I    F        D+K L     +   + + KK+   I++L
Sbjct: 445 SQRIIQKKFSHENADNEDNKSLRLPKRRFQWNEVTKKLLKDILIL 489


>gi|256423414|ref|YP_003124067.1| signal transduction histidine kinase with CheB and CheR activity
           [Chitinophaga pinensis DSM 2588]
 gi|256038322|gb|ACU61866.1| signal transduction histidine kinase with CheB and CheR activity
           [Chitinophaga pinensis DSM 2588]
          Length = 1274

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              +E+L  L + L+ S      + EE+     +LQ ++ + +      + S  ++  +N
Sbjct: 663 RQLEEELIRLKAQLRASIEQHEFQQEELKASNEELQAMNEELRSAAEELETSKEELQSIN 722

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                      +EL++V   L+ K+    + 
Sbjct: 723 -----------EELRTVNQELKVKVDETTLA 742


>gi|253745307|gb|EET01324.1| GTP-binding protein ARD-1, putative [Giardia intestinalis ATCC
           50581]
          Length = 400

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 73/236 (30%), Gaps = 25/236 (10%)

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPI---TSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             HVS +G      G     +  K     +  E  +    +N            I + + 
Sbjct: 55  EQHVSGSGYGNLXSGTSSQRSAGKQHLCDSCQEAGASVFCLNCQGWLCSRCEANIHHNKL 114

Query: 659 AIASGAAALLGTKYN-------DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I       L              V                +  G+H      I+     
Sbjct: 115 FIKHERVNALDYMPPVMCKYHETEVTTHICATCQELCCIYCIVNGSHPPGPDHIVQSVAK 174

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769
             S     + R+E  +   A   L  +   L+     LK+S   +   VE +    R+  
Sbjct: 175 GLS-----VVRLEMSS---ALDLLQQKSSDLEKALESLKMSTDELNESVELVRSRTREGF 226

Query: 770 --LQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             L+ I  +R+  L  N+E     +  D++  + II    +  ++S++    +K+Q
Sbjct: 227 ERLRKILNEREADLLDNIERFKIEQSRDLHDKTQIIRAAHTG-IRSLIQETTQKLQ 281


>gi|218202347|gb|EEC84774.1| hypothetical protein OsI_31808 [Oryza sativa Indica Group]
          Length = 318

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 61/144 (42%), Gaps = 3/144 (2%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +  +T +     +    ++L  ++S L  ++ ++  R+E +  +  +   +    + ++N
Sbjct: 120 VMFVTKRNMTKAVESMSKQLDQVSSALAATKRHLTQRLENLDGKMDEQVEVSKIIRNEVN 179

Query: 783 VEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                  +I  D+  +  +++ ++ K    ++D  Q    +G+  L  I+   K  +   
Sbjct: 180 DVKDDLSQIGFDIAAIQQMVAGLEGKI--ELLDNKQDATNAGVWYLCQIAGGLKDGINAK 237

Query: 842 VTEDLLDRFNAVDLARLSAKVLGG 865
             ++  ++    +LA+   K + G
Sbjct: 238 FFQEANEKLKLTELAQSERKAVKG 261


>gi|297727075|ref|NP_001175901.1| Os09g0482740 [Oryza sativa Japonica Group]
 gi|215692726|dbj|BAG88146.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222641798|gb|EEE69930.1| hypothetical protein OsJ_29795 [Oryza sativa Japonica Group]
 gi|255678996|dbj|BAH94629.1| Os09g0482740 [Oryza sativa Japonica Group]
          Length = 318

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 61/144 (42%), Gaps = 3/144 (2%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +  +T +     +    ++L  ++S L  ++ ++  R+E +  +  +   +    + ++N
Sbjct: 120 VMFVTKRNMTKAVESMSKQLDQVSSALAATKRHLSQRLENLDGKMDEQVEVSKIIRNEVN 179

Query: 783 VEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                  +I  D+  +  +++ ++ K    ++D  Q    +G+  L  I+   K  +   
Sbjct: 180 DVKDDLSQIGFDIAAIQQMVAGLEGKI--ELLDNKQDATNAGVWYLCQIAGGLKDGINAK 237

Query: 842 VTEDLLDRFNAVDLARLSAKVLGG 865
             ++  ++    +LA+   K + G
Sbjct: 238 FFQEANEKLKLTELAQSERKAVKG 261


>gi|189236704|ref|XP_001814127.1| PREDICTED: similar to yemanuclein [Tribolium castaneum]
          Length = 781

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIW--EEYRKLQLIHAKRKLQLN--------VEDLS 787
           + +  + LA+FLK     +  R + +   +E +KL+ + +  K ++N          +  
Sbjct: 322 KMKVYEHLATFLKCKTETLTRRAKSLVLDDEQKKLKNLLSGLKSEINNIMPSLLESYEKE 381

Query: 788 CHKIADVNFMSHIISEVDSKEL-----KSVMDALQKKIQSGIIML 827
             +I    F        D+K L     +   + + KK+   I++L
Sbjct: 382 SQRIIQKKFSHENADNEDNKSLRLPKRRFQWNEVTKKLLKDILIL 426


>gi|303233547|ref|ZP_07320205.1| copper amine oxidase N-terminal domain protein [Finegoldia magna
           BVS033A4]
 gi|302495291|gb|EFL55039.1| copper amine oxidase N-terminal domain protein [Finegoldia magna
           BVS033A4]
          Length = 784

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +KI
Sbjct: 306 IKDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGEKLKQEKAKLEEEIRDKD---NKI 362

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           A ++     I   ++ EL + +  L+ +++S
Sbjct: 363 AQLDKEIEDIKNSNNDELIAEITQLKDELKS 393



 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/84 (10%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--------LNVEDLS 787
               +  K +      +   ++  + ++ +E + LQ  +AK K             ++ +
Sbjct: 360 NKIAQLDKEIEDIKNSNNDELIAEITQLKDELKSLQDENAKLKEDYSSTKWELEAEKEKT 419

Query: 788 CHKIADVNFMSHIISEVDSKELKS 811
                 +  M   +  ++ +  K 
Sbjct: 420 DKNENKIKEMQEKLESLEGELAKK 443


>gi|296191774|ref|XP_002743773.1| PREDICTED: myosin-9 [Callithrix jacchus]
          Length = 1960

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 1070 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNK 1129

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +VN +   + E ++K  ++ + 
Sbjct: 1130 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQ 1188

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGGG 868
             +++K    +  L    ++ K        +  L++          +LA    KVL  G G
Sbjct: 1189 EMRQKHSQAVEELAEQLEQTKRV------KANLEKAKQTLENERGELANEV-KVLLQGKG 1241


>gi|295913487|gb|ADG57993.1| transcription factor [Lycoris longituba]
          Length = 270

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              S  +    +L+S A  LK S  N+  +++E+  E  +L+    + K +    +    
Sbjct: 143 AILSDAVRMVNQLRSEAQKLKDSNENLQEKIKELKAEKNELRDEKQRLKQEKENLEQQVK 202

Query: 790 KIA 792
            + 
Sbjct: 203 LLN 205


>gi|302417210|ref|XP_003006436.1| E3 ubiquitin-protein ligase BRE1 [Verticillium albo-atrum VaMs.102]
 gi|261354038|gb|EEY16466.1| E3 ubiquitin-protein ligase BRE1 [Verticillium albo-atrum VaMs.102]
          Length = 639

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 16/118 (13%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEV 804
              K    +++ R+  +    ++L+    + + +        +  A  +   +   + E 
Sbjct: 308 KAFKAQNEDLIKRINHLEATNKQLREESERLQFERQAFRSKLNDEAQTHIADLERQVEER 367

Query: 805 DSKE--LKSVMDALQKKIQSGIIMLVGISKEKKASV-----LIVVTEDLLDRFNAVDL 855
           +     L++  D    K      ML    KE+K ++     L    +D   R  A++L
Sbjct: 368 EGDVTRLRAARDEWFAKAS----MLEASQKEEKTALQHIQELAGAKDD---RITALEL 418


>gi|168487073|ref|ZP_02711581.1| pneumococcal surface protein A [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570000|gb|EDT90528.1| pneumococcal surface protein A [Streptococcus pneumoniae
           CDC1087-00]
          Length = 776

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 15/116 (12%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK  +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 246 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 299

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARL 858
            + EL++ +  L+K+I +  I+L G   E         T  L ++  A   +LA+ 
Sbjct: 300 KADELQNKVADLEKEISNLEILLGGADPEDD-------TAALQNKLAAKQAELAKK 348


>gi|322514005|ref|ZP_08067079.1| uroporphyrin-III C-methyltransferase [Actinobacillus ureae ATCC
           25976]
 gi|322120155|gb|EFX92116.1| uroporphyrin-III C-methyltransferase [Actinobacillus ureae ATCC
           25976]
          Length = 458

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 24/149 (16%)

Query: 731 ARSHLMGQDEKLKSLA-------------SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           A       ++++  LA                K     + G  ++  E   +L+      
Sbjct: 89  ANKKFNEVEQQIAQLAGKPVETLGELPTFEAEKAQLAELTGNYQKALERITQLEQEQLTY 148

Query: 778 KLQLNVEDLSCHKIADVN---FMSHIISEVD---SKELKSVM-----DALQKKIQSGIIM 826
             Q+        K++ V     +   +S+ D   +  L+ ++     D  +  +Q    +
Sbjct: 149 SSQIENLQTQLQKVSGVPQSDSVVWKLSDADFLLNNALRKLVLDNDIDTTKTLLQEADAV 208

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDL 855
           L  ++  +  ++   +  DL    N  ++
Sbjct: 209 LAKVANGQVDNIRAAIKNDLSQLANVNNV 237


>gi|255003664|ref|ZP_05278628.1| major surface protein 3 [Anaplasma marginale str. Puerto Rico]
          Length = 593

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G R        +E  + L S L + +   +     V++  E  ++L+     +K QL  +
Sbjct: 142 GLRTLLEQKKAEEIERELKSALGLEKLEKLAELELVKQRLESMKELERELEAKKSQLEKD 201

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSV 812
            L     A V        E D  +L+ +
Sbjct: 202 GLRVELEALVRL------EADVAQLREL 223


>gi|297847466|ref|XP_002891614.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337456|gb|EFH67873.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 226

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 25/63 (39%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              +  +    + +  A  LK    ++  +++E+ +E  +L+    K K++    D    
Sbjct: 105 AIINDAIRMVNQAREEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKIEKERIDQQLK 164

Query: 790 KIA 792
            I 
Sbjct: 165 AIK 167


>gi|221118083|ref|XP_002161493.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 554

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 742 LKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFM 797
           +  +   +K     +   +  ++++ +E  KL       K +L       + I  D   +
Sbjct: 191 VDEIREQIKKKNKEMSQYLDDIKQLQDENDKLVQDVENAKKELEQATQDMNSITDDYGKL 250

Query: 798 SHIISEVDS--KELKSVMDALQKKIQSGIIMLV-GISKEKKAS 837
             I+ + D+  +E++   D L+ +I    + L      + K  
Sbjct: 251 KVILEDTDAVLEEMRKERDILRSQIHDMTVQLQKQTDGDDKIM 293


>gi|169825032|ref|YP_001692643.1| hypothetical protein FMG_1335 [Finegoldia magna ATCC 29328]
 gi|167831837|dbj|BAG08753.1| hypothetical protein [Finegoldia magna ATCC 29328]
          Length = 621

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 5/115 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-----EEYRKLQLIHAKRKLQLNVEDLS 787
             L  Q++ +  LA  L       +    ++       +  +LQ   AK K +       
Sbjct: 350 EILNDQNKNINDLADKLNADMIKELEDFSKLSSSEQYAKIAELQKELAKLKKEYAKTSEG 409

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             ++  +      + + + K ++ +   L     +  +               +V
Sbjct: 410 IQQVKKLVTYQFHVKDTEGKGVQGLTLRLANVDDTSKVYTATSDANGLIQFKSMV 464


>gi|106534208|gb|ABF82170.1| BdrC1 [Borrelia hermsii DAH]
          Length = 220

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 732 RSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
             +L       L+ + + LK    ++  +++ + E    +++ + + +L+ +++DL  +K
Sbjct: 44  IEYLETTFNLKLEKVGASLKSDIKDLDNKIDTV-ENNLNIKIDNVRNELKSDIKDLD-NK 101

Query: 791 IADV-NFMSHIISEV------DSKELKSVMDALQKKIQSGI 824
           I  V N ++  I  V      D K+L + +D ++ +++S I
Sbjct: 102 IDTVENNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDI 142


>gi|302306279|ref|NP_982457.2| AAL085Cp [Ashbya gossypii ATCC 10895]
 gi|299788444|gb|AAS50281.2| AAL085Cp [Ashbya gossypii ATCC 10895]
          Length = 812

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 16/105 (15%)

Query: 729 QRARSHLMGQDEKLKSL---ASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRK 778
           Q A        E L  L   A  LK  +  +V         V+ +    ++ +    K K
Sbjct: 604 QEALDKFQQLQEHLHKLNVDAVQLKAHELELVEENRKLKVTVDGMESANKEDENELFKLK 663

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVD-SKELKSVMDALQKKIQS 822
            Q+ + DL  H     NF++  +   D  + L+  +  L+K++Q 
Sbjct: 664 EQVKIMDLEKH-----NFITERLDYQDKIESLEKQLTQLRKQLQK 703


>gi|238620085|ref|YP_002914911.1| hypothetical protein M164_1640 [Sulfolobus islandicus M.16.4]
 gi|238381155|gb|ACR42243.1| hypothetical protein M164_1640 [Sulfolobus islandicus M.16.4]
          Length = 308

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +   +++++ L + +K +      ++     E  K +    K K ++N E     KI   
Sbjct: 150 INNVEQRIQQLKAKMKDADKVTKSKISIKLRELYKKRSELYKSKNKINAELRKFEKI--- 206

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSG 823
                +I   +  +LK  +  L+ +I+S 
Sbjct: 207 ----TLIDNEEINDLKKKVTELKSQIKST 231


>gi|150376903|ref|YP_001313499.1| periplasmic binding protein/LacI transcriptional regulator
           [Sinorhizobium medicae WSM419]
 gi|150031450|gb|ABR63566.1| periplasmic binding protein/LacI transcriptional regulator
           [Sinorhizobium medicae WSM419]
          Length = 296

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 17/133 (12%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L  Q      LA  +K           E  E+   L++  A + L   + D+    +  V
Sbjct: 33  LTQQHPFYIELAEAMKA----------EAKEKNVALEVAIANQDLNKQLADVEDFIVKGV 82

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
           + +  +IS VDS+ +++ +    +K    +I +   +     +  I  T++      A +
Sbjct: 83  DVI--VISPVDSQGVRAAIAK-AEKAGIKVITVDVPANGATVTSHIG-TDNFTGGVKAGE 138

Query: 855 LARLSAKVLGGGG 867
           L    AKVLG  G
Sbjct: 139 LM---AKVLGSKG 148


>gi|72387295|ref|XP_844072.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62360231|gb|AAX80649.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800604|gb|AAZ10513.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 619

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDL 786
           ++A   +  Q + L+     L+    ++   +  + EE + LQ      + + +  ++  
Sbjct: 24  KKAVVTVTKQKQVLEQQNEQLRQQMTSIGEELARVQEENKNLQRKLKTVELEAERKLKQA 83

Query: 787 SCHKIADVNFMSHIISEVDSKE 808
                     +S ++S  D  +
Sbjct: 84  VATSKTSWKGLSSLVSGADGTD 105


>gi|73669795|ref|YP_305810.1| leucine-rich repeat-containing protein [Methanosarcina barkeri str.
           Fusaro]
 gi|72396957|gb|AAZ71230.1| leucine-rich-repeat protein [Methanosarcina barkeri str. Fusaro]
          Length = 863

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 63/465 (13%), Positives = 138/465 (29%), Gaps = 35/465 (7%)

Query: 330 CTEMGSAYPELIQAKLLIEETL---RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
              M + +   +  + L    L   R E   +     R       VL  L K +      
Sbjct: 380 QEIMHATHQFFLSKRSLYILVLDSRRDEKAEYWLKHIRSFGGDSPVLVALNKIDENPSFE 439

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
             + +     P   ++            I  F+Q     + +     +        K WF
Sbjct: 440 LNRKFLQEKYP--SIKGFFRISCKEDRGIEGFSQ-----KLKKELLKVEHMQIEWAKSWF 492

Query: 447 SLKEKYGA--TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
            +K K       FI Y+  R     +       Q   +D  N +   V    +   +++ 
Sbjct: 493 EVKTKLEKMSCNFITYEEYRNICLEENVGDKSSQNTLVDFLNDLG--VIVHFKDISLLDT 550

Query: 505 AVSG-----QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            V       + V  + +      + G         I +  +        +  G  ++   
Sbjct: 551 HVLEPKWITEGVYKIINSEILAKKKGVLRFSMLDEILEQKKEGDYYYPPERYGYIINLMK 610

Query: 560 VERGILRTEMSLVLT----IDYQNRRQLSINHSATHLLHHAL--STILGSHVSQNGSCIT 613
                   +   VL        +       N +    + +     +I+   + +    I 
Sbjct: 611 KFELCYSIDEETVLLPDLLAVPEPNFDFDSNEALKFFIEYDFLPRSIMPRFIVKMHRDI- 669

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
                        + + +  S     +D  A+ + +      + D  +S     L     
Sbjct: 670 --KDDLQWRTGVVLENKQFNSCAVIKSDNEAKRIYINVNGCQKRDYFSS-ILFNLREINR 726

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
              ++ ++E       S       H+ +  E+ +   V E S +    R+  + G    +
Sbjct: 727 SFEKLKAIEKIPLPDESEIAVSYEHLVNLEEMGIDLFVPEGSKKK--YRVSDLLGT--VN 782

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           +L  Q+E LK + + LK +  +   ++EEI++  +K+       +
Sbjct: 783 NLSKQEELLKEILNILKKNNED--EKLEEIFKFLKKIADESDNEE 825


>gi|22299745|ref|NP_682992.1| threonyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|73919834|sp|Q8DGW0|SYT_THEEB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22295929|dbj|BAC09754.1| threonyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 605

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H+L  A+  +        G  I  +G  +D  H +P +  +L+ IE  +  II + 
Sbjct: 25  HTTSHILAMAVQKLFPKAQVTIGPWI-ENGFYYDFDHPEPFSEKDLRLIEKEMVKIIKRK 83

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHVSSTG 703
           LPV+   + RE+A        LG  Y   +       +     G     LC G HV +TG
Sbjct: 84  LPVIREEVTREEAERR--IRALGEPYKLEILQDLEEPITIYHLGDEWWDLCAGPHVENTG 141

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           EI     ++  S+     R     G   ++ L                +   +      +
Sbjct: 142 EIDP-KAIALESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLAEYKRRK 188

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++RK+    
Sbjct: 189 EEALRRDHRKVGKEL 203


>gi|183597292|ref|ZP_02958785.1| hypothetical protein PROSTU_00539 [Providencia stuartii ATCC 25827]
 gi|188023309|gb|EDU61349.1| hypothetical protein PROSTU_00539 [Providencia stuartii ATCC 25827]
          Length = 220

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 74/226 (32%), Gaps = 32/226 (14%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           ++E+    +   V      F+ + GGQ  D G      +R++          I  + A  
Sbjct: 19  VLEKGQDDEGQWVALRDNIFHPQGGGQPADAGWINDQPVRIKKH----PNGWIIAYLAPD 74

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           +        ++   ID   R+  +  H+  HLL   ++         +            
Sbjct: 75  QNL--NVGDAVSAKIDKAQRQYHAALHTTGHLLSWEMACFGWKGQKGHHFPNESRVEFSA 132

Query: 621 VT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           ++ +  PI   + + IE  VN  +  + PV                          +R+ 
Sbjct: 133 ISDNPTPIEQLDEREIEALVNQRLHGDYPVSVEQ-------------------RGELRLC 173

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            V   D        CGGTHV S G+I    I S    + G+ RI  
Sbjct: 174 RVSEGDE-----VPCGGTHVDSLGKICQFVIKSMK-YKKGVLRISY 213


>gi|187607774|ref|NP_001120551.1| cingulin-like 1 [Xenopus (Silurana) tropicalis]
 gi|171846931|gb|AAI61484.1| LOC100145705 protein [Xenopus (Silurana) tropicalis]
          Length = 770

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           ++A+   R +  L   +E        LK    N+  ++  + +E + L   + + K +L+
Sbjct: 285 LKAVFENRVKGLLQENEE--------LKSKIENLEAKIAALRQEIKDLNEENERIKDKLS 336

Query: 783 VEDLSCHKIA 792
             +    ++A
Sbjct: 337 KSEKEKQQLA 346



 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-RKLQLIHAKRKLQLNVE 784
           +  +     L  ++ +L +L   LK         ++++ E+Y ++L+ I       +   
Sbjct: 213 LAKEEQEDLLRRRERELTALKGALKEEVATHDQELDKLKEQYDKELKSIRDNLTAAVKNS 272

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
               ++  + N +  +      K L    + L+ KI++    +  + +E K
Sbjct: 273 SDIANQKDEANQLKAVFENR-VKGLLQENEELKSKIENLEAKIAALRQEIK 322


>gi|152992620|ref|YP_001358341.1| hypothetical protein SUN_1027 [Sulfurovum sp. NBC37-1]
 gi|151424481|dbj|BAF71984.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 406

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE--DLSCH-K 790
               + +    L S +K ++    G++E + EE +  ++   + K +L  +  D+  +  
Sbjct: 138 AFYREKKISAPLQSKIKTTKSEYAGKIEALQEENKNNEIRIGQIKQKLIQQFSDIGVNLT 197

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQ 817
              +N +   +   D  ++  +MD L+
Sbjct: 198 PEQINVLLTRVDGDDIIQMALMMDVLK 224


>gi|112253526|gb|ABI14350.1| unknown [Pfiesteria piscicida]
          Length = 659

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 17/110 (15%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA-SFLKVSQGNV 756
           H+++T       + +E S+ A   RI+      A   L    E          K      
Sbjct: 34  HLANT-------VSNEESVAA---RIKF-----AMEDLKKARETGDEAKVKEAKAEVEKA 78

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVD 805
              VE+   E ++ +    K ++++   +    K   ++      + + +
Sbjct: 79  KAEVEKAKAEIKEAEAKVEKAEVKVKEAEAKVEKAKAEIKEAEAKVEKAE 128


>gi|292627472|ref|XP_002666640.1| PREDICTED: x-linked retinitis pigmentosa GTPase
           regulator-interacting protein 1-like [Danio rerio]
          Length = 1342

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           + +L+     LK SQ  ++G+VEE+ E+ ++ +      + QL+    S   + ++    
Sbjct: 281 ENQLEEGQKSLKESQEALLGKVEELSEQLKQEKQRVLTLEGQLSAATFSLQALGELQERV 340

Query: 799 HIISEVDSKELKSVMDAL 816
             +   +   LK   D+L
Sbjct: 341 LDLEG-ERNLLKKSYDSL 357


>gi|120436306|ref|YP_861992.1| two-component system sensor histidine
           kinase/methyl-esterase/transferase hybrid [Gramella
           forsetii KT0803]
 gi|117578456|emb|CAL66925.1| two-component system sensor histidine
           kinase/methyl-esterase/transferase hybrid [Gramella
           forsetii KT0803]
          Length = 1219

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            ++   + +LK     L+ S   +    EE+     +L   + + +           +I 
Sbjct: 664 EYVASLENELKDTKEDLQTSLEEIETSNEELQAANEELLASNEELQSTNEELQSVNEEIN 723

Query: 793 DVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIML 827
            VN  +  + ++D    L + M+ L K    G+I L
Sbjct: 724 TVN--AENVQKMDDLAALNADMNNLLKSTDIGVIFL 757


>gi|114326446|ref|NP_071855.2| myosin-9 isoform 1 [Mus musculus]
 gi|205371802|sp|Q8VDD5|MYH9_MOUSE RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain,
            type A; AltName: Full=Myosin heavy chain 9; AltName:
            Full=Myosin heavy chain, non-muscle IIa; AltName:
            Full=Non-muscle myosin heavy chain A; Short=NMMHC-A;
            AltName: Full=Non-muscle myosin heavy chain IIa;
            Short=NMMHC II-a; Short=NMMHC-IIA
 gi|74180962|dbj|BAE27761.1| unnamed protein product [Mus musculus]
 gi|74180967|dbj|BAE27763.1| unnamed protein product [Mus musculus]
 gi|74180971|dbj|BAE27765.1| unnamed protein product [Mus musculus]
 gi|74180973|dbj|BAE27766.1| unnamed protein product [Mus musculus]
 gi|74180975|dbj|BAE27767.1| unnamed protein product [Mus musculus]
 gi|74180985|dbj|BAE27772.1| unnamed protein product [Mus musculus]
 gi|74180987|dbj|BAE27773.1| unnamed protein product [Mus musculus]
 gi|74180995|dbj|BAE27776.1| unnamed protein product [Mus musculus]
 gi|74180997|dbj|BAE27777.1| unnamed protein product [Mus musculus]
 gi|74180999|dbj|BAE27778.1| unnamed protein product [Mus musculus]
 gi|74181014|dbj|BAE27783.1| unnamed protein product [Mus musculus]
 gi|74181018|dbj|BAE27785.1| unnamed protein product [Mus musculus]
 gi|74181123|dbj|BAE27829.1| unnamed protein product [Mus musculus]
 gi|74184545|dbj|BAE27894.1| unnamed protein product [Mus musculus]
 gi|74184580|dbj|BAE27906.1| unnamed protein product [Mus musculus]
 gi|123233477|emb|CAM23428.1| myosin, heavy polypeptide 9, non-muscle [Mus musculus]
 gi|148697703|gb|EDL29650.1| myosin, heavy polypeptide 9, non-muscle [Mus musculus]
          Length = 1960

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 19/179 (10%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 1070 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNK 1129

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +V+ +   + + ++K  ++ + 
Sbjct: 1130 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLED-EAKTHEAQIQ 1188

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGG 867
             +++K    +  L    ++ K        +  L++          +LA     +L G G
Sbjct: 1189 EMRQKHSQAVEELADQLEQTKRV------KATLEKAKQTLENERGELANEVKALLQGKG 1241


>gi|327311929|ref|YP_004338826.1| hypothetical protein TUZN_2056 [Thermoproteus uzoniensis 768-20]
 gi|326948408|gb|AEA13514.1| hypothetical protein TUZN_2056 [Thermoproteus uzoniensis 768-20]
          Length = 329

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              +  + ++LK     ++ +  N+V  +  + EE  KL+    +   QL        ++
Sbjct: 174 IQEIKNKLDELKRRKDEIRQNIANLVNSLNSVKEEIAKLKKEREEAYKQLTELKKKRDEL 233

Query: 792 ADVN--FMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEK--KASVLIVVTEDL 846
             +       I+   +  KEL++ +  L+ ++    I+L      +  K ++     +  
Sbjct: 234 KQMRDDLKKAIVDLAIKRKELRARLAQLRDELNKYTILLKAADLSERYKTALEAQNAKKE 293

Query: 847 LDRFNAVDL 855
             R  A ++
Sbjct: 294 GLRAKAEEI 302


>gi|154272297|ref|XP_001537001.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150408988|gb|EDN04444.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 533

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 53/155 (34%), Gaps = 12/155 (7%)

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+S +  + GV    +C            L        I    R+ E    +   + +  
Sbjct: 82  VISFQRVNDGVCDYEMCCDGSDEWARVGGLKCENRCKEIGKEWRKNEEKRHKSLTAAVKK 141

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-------EDLSCHK 790
           + E +K+ A      +  V  R+ ++  E    +L     +  L         + +    
Sbjct: 142 RAELVKAAAKL----RKEVEDRISDLEVEVAASELKVQNLEQALETVRANERGKVVKSQN 197

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              VN ++ +  E   +EL+  +  ++++    ++
Sbjct: 198 KGKVNVLAGLAKER-VEELRGALVQVRRERDENLV 231


>gi|17978023|emb|CAC85955.1| nonmuscle heavy chain myosin II-A [Mus musculus]
          Length = 1960

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 19/179 (10%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 1070 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNK 1129

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +V+ +   + + ++K  ++ + 
Sbjct: 1130 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLED-EAKTHEAQIQ 1188

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGG 867
             +++K    +  L    ++ K        +  L++          +LA     +L G G
Sbjct: 1189 EMRQKHSQAVEELADQLEQTKRV------KATLEKAKQTLENERGELANEVKALLQGKG 1241


>gi|326389478|ref|ZP_08211045.1| MgtE intracellular region [Thermoanaerobacter ethanolicus JW 200]
 gi|325994483|gb|EGD52908.1| MgtE intracellular region [Thermoanaerobacter ethanolicus JW 200]
          Length = 192

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 34/138 (24%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           +  ++ ++  L + LK  +  +            ++  +  E  K+Q   +  K QL  +
Sbjct: 63  VQDKNAEIAKLTNELKAKEQQIADYEAKLKEKDDQINALKAELEKIQNESSTLKQQLENK 122

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             S   I      +     +D               Q+   +L  +S E    +L  + +
Sbjct: 123 QASLKDI------ATYYQNMDP--------------QNAAQILNNMSDEDVIKILSYMNK 162

Query: 845 DLLDRF----NAVDLARL 858
           D   +      A   A++
Sbjct: 163 DSASKILESLKADKAAKI 180


>gi|302798298|ref|XP_002980909.1| hypothetical protein SELMODRAFT_444669 [Selaginella moellendorffii]
 gi|300151448|gb|EFJ18094.1| hypothetical protein SELMODRAFT_444669 [Selaginella moellendorffii]
          Length = 396

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           RA+      + +    AS LK     +  +++E  +  ++    +AK K           
Sbjct: 136 RAKQLEKELENETAKHASELKSQADMIASKLQEEIKTLKEEASANAKSKQSEEAGKDKLR 195

Query: 790 KIADVNFMSHIIS--EVDSKEL 809
            + ++  +   +    +   +L
Sbjct: 196 LVNEITELKRQVEALGLSGSDL 217


>gi|302825546|ref|XP_002994381.1| hypothetical protein SELMODRAFT_432305 [Selaginella moellendorffii]
 gi|300137714|gb|EFJ04557.1| hypothetical protein SELMODRAFT_432305 [Selaginella moellendorffii]
          Length = 396

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           RA+      + +    AS LK     +  +++E  +  ++    +AK K           
Sbjct: 137 RAKQLEKELENETAKHASELKSQADMIASKLQEEIKTLKEEASANAKSKQSEEAGKDKLR 196

Query: 790 KIADVNFMSHIIS--EVDSKEL 809
            + ++  +   +    +   +L
Sbjct: 197 LVNEITELKRQVEALGLSGSDL 218


>gi|192361080|ref|YP_001982067.1| ATP synthase, Delta/Epsilon chain, long alpha-helix domain
           [Cellvibrio japonicus Ueda107]
 gi|190687245|gb|ACE84923.1| ATP synthase, Delta/Epsilon chain, long alpha-helix domain
           [Cellvibrio japonicus Ueda107]
          Length = 1101

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI A     A S        L  L    K  Q ++   ++ + E+ RKL+    K+    
Sbjct: 750 RILATAHFPAISAPQ-----LGDLYDLEKQQQDSLQQSIDTLKEKLRKLESELVKKMSDA 804

Query: 782 NVEDLSC-----HKIADVNFMSHII----SEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             ED         ++ DV      +     E   ++L+  ++ L K     +  L+    
Sbjct: 805 KKEDRGALSEVGRELEDVPQYLARLQVLTEEALPEKLRQFLEYLNKSSDESVTQLLSYVD 864

Query: 833 EKKASV 838
            + A +
Sbjct: 865 NEVAII 870


>gi|312283253|dbj|BAJ34492.1| unnamed protein product [Thellungiella halophila]
          Length = 229

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 26/63 (41%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              +  +    +++  A  LK    ++  +++E+ +E  +L+    K K++    +    
Sbjct: 108 AIINDAIRMVNQVRDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKIEKERIEQQLK 167

Query: 790 KIA 792
            I 
Sbjct: 168 AIK 170


>gi|303391581|ref|XP_003074020.1| hypothetical protein Eint_111610 [Encephalitozoon intestinalis ATCC
           50506]
 gi|303303169|gb|ADM12660.1| hypothetical protein Eint_111610 [Encephalitozoon intestinalis ATCC
           50506]
          Length = 388

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 6/57 (10%), Positives = 25/57 (43%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
             LK  + ++  +++   E+ R+ ++ + K   ++ +      +  ++    + + E
Sbjct: 215 QILKAKRSDLSEKIKAQQEKIREKEVEYDKFLEEMAIAQALEKQKEEIKQRINALEE 271


>gi|260798807|ref|XP_002594391.1| hypothetical protein BRAFLDRAFT_277607 [Branchiostoma floridae]
 gi|229279625|gb|EEN50402.1| hypothetical protein BRAFLDRAFT_277607 [Branchiostoma floridae]
          Length = 757

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 59/130 (45%), Gaps = 14/130 (10%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRV 760
           ++    + +E       + IE+IT +     L  ++++ + +   L+     V      V
Sbjct: 38  QMESKKMKAEQECDEMRKEIESITLK-----LNKREKEKQEVEDKLRAMTEEVAVNDELV 92

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF-MSHIISEVD-----SKELKSVMD 814
            ++  E +KL+ ++A+    L  E+     +  +   +   + +++      K++++ +D
Sbjct: 93  GKLGREKKKLEELNAQTLDDLQSEEDKTQNLTKLKVKLEQTLDDLEDNLEHDKKIRADVD 152

Query: 815 ALQKKIQSGI 824
            +++K+++ +
Sbjct: 153 RVKRKLENDL 162


>gi|254168764|ref|ZP_04875606.1| DHH family [Aciduliprofundum boonei T469]
 gi|197622390|gb|EDY34963.1| DHH family [Aciduliprofundum boonei T469]
          Length = 483

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I+    S++    V       L+D+  N   + R ++  +GG GGG   ++A +G     
Sbjct: 408 IIAFANSEDGNIKVSARAPRALVDKGLNLSIIMREASAEVGGYGGG--HNIA-AGASIPK 464

Query: 884 KA-DQAIAGVASFLKK 898
              D+ +  V + +KK
Sbjct: 465 GKEDEFLDIVENMIKK 480


>gi|297582750|ref|YP_003698530.1| MCP methyltransferase/methylesterase CheR/CheB [Bacillus
           selenitireducens MLS10]
 gi|297141207|gb|ADH97964.1| MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor
           [Bacillus selenitireducens MLS10]
          Length = 973

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 92/340 (27%), Gaps = 11/340 (3%)

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY +    + M    K    + P      +       +      +  +       +    
Sbjct: 379 GYQVTEAIRKMVVFAKHNILRDPPFSKLDLLVCRNLFIYLKSEHQRTILNSFYYSLKPNG 438

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
             +  +   LG+                 K      +    +  G       +    D  
Sbjct: 439 YLFLGSSETLGELSEGFAAVDAKWKIYQYKAGYKPDIETGTLLPGYRAEAREVRQERDTD 498

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R  + +    +  +       L          +  D  RF  T     +++   ++   
Sbjct: 499 MRGSMKMESLLSEAMASISPPSLIIDRQDEIVHVVNDVSRFIRTQPGRFSNSYHTNMNKE 558

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-SALCGGT 697
            +  ++  L  +                          R+  V  ED  + S     G  
Sbjct: 559 QSLFVSNILRRLKHERQDVTITNVSNFTESDATLTLAGRIFQVRGEDYFLISFMEQKGAA 618

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGN 755
           H   T +I +     E        R+E + G+   AR  L    E+L++    L+ S   
Sbjct: 619 HKGKTVDIDMSEEARE--------RVEELEGELQLAREGLQATIEELETSNEELQSSNEE 670

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
           ++   EE+     +LQ ++ +         +   ++  +N
Sbjct: 671 LIASNEELQSTNEELQSVNEELYTVNAEHQMKIDELVKLN 710


>gi|118095699|ref|XP_413790.2| PREDICTED: similar to Cingulin-like 1 [Gallus gallus]
          Length = 1301

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +  R+ +  Q +KL    + LK +   +  + EE+ +++  ++      K +L       
Sbjct: 811 EEVRNSIENQVKKLTEANTQLKRTVDELETKNEELHKQFDSMKGEENSMKEKLKRYKDEN 870

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            ++ +    +   +E ++KEL ++  +L+ ++++
Sbjct: 871 QQLEE----ALKYAEKEAKELMALKTSLENQLEN 900


>gi|88608018|ref|YP_506019.1| ClpB protein [Neorickettsia sennetsu str. Miyayama]
 gi|88600187|gb|ABD45655.1| ClpB protein [Neorickettsia sennetsu str. Miyayama]
          Length = 854

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RIE+ +       L  +  +LK  A  LK  +  N +GR+E+I ++   L+   A  +  
Sbjct: 403 RIESDSKPEVIDELDRKIIQLKIEAEALKKEKDANSIGRLEKIKQDLEGLEKKQADLESS 462

Query: 781 LNVEDLSCHKIADVN 795
              E     +I  + 
Sbjct: 463 WQAEKSKLKEIQKLK 477


>gi|42520480|ref|NP_966395.1| hypothetical protein WD0630 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410219|gb|AAS14329.1| hypothetical protein WD_0630 [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 793

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 22/56 (39%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +L  +   L+ +   L  S   +  +V+++ +E +     + + K +L        
Sbjct: 460 YLERKLNGLEKMNESLDNSVQELEKKVDKLEKENKDFLAENDELKEKLATAKEEKE 515


>gi|6981616|ref|NP_036942.1| synaptonemal complex protein 1 [Rattus norvegicus]
 gi|57213|emb|CAA48006.1| SCP1 [Rattus norvegicus]
          Length = 946

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             Q + L++  + LK    N    +EE+ +E + L+   +    QLN  ++  +K+ 
Sbjct: 562 EKQMKILENKCNNLKKQIENKSKNIEELHQENKALKKKSSAENKQLNAYEIKVNKLE 618


>gi|306826854|ref|ZP_07460154.1| phage endopeptidase [Streptococcus pyogenes ATCC 10782]
 gi|304430872|gb|EFM33881.1| phage endopeptidase [Streptococcus pyogenes ATCC 10782]
          Length = 679

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
                 ++++       K +Q  +  R ++  EE+R+  L +     +   +     K+ 
Sbjct: 412 RWREDLEKQISEAIEKAKKAQEEINQRTDKELEEFRET-LKNLALPEEAIKKITEAIKVD 470

Query: 793 DVNFMSHIISEVDSK---------ELKSVMDALQKKIQSG 823
           D+  +     ++ +K          +K   D L+ K+   
Sbjct: 471 DIPSIKQSFDDLKNKINETVDDIPSIKQSFDDLKNKVSET 510


>gi|300870146|ref|YP_003785017.1| threonyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300687845|gb|ADK30516.1| threonyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 643

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 17/171 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS +HL+  A+  +  +     G  I      +D    KP T  +L  IED +  I+ +N
Sbjct: 72  HSTSHLMAQAVRRLYPNTQVTIGPAIKDG-FYYDFDAEKPFTEEDLPKIEDEMKKIVKEN 130

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRV----RVVSVEYEDGGVHSSALCGGTHVSST 702
           +PVV ++M +++A            Y   +       +V + + G     LC G HV ST
Sbjct: 131 IPVVRKVMKKDEA--IEYFKKANEPYKVEIIEGIDADTVSFYEQGDF-IDLCRGPHVPST 187

Query: 703 GEIMLLYI-------VSESSIRAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
           G I    +           S    + RI       + A    + + ++ K 
Sbjct: 188 GYIKSYKLMSVAGSYWRGDSNNKMLSRIYGTAFESKEALDKYLKKLKEAKE 238


>gi|294649513|ref|ZP_06726934.1| hypothetical protein HMP0015_1143 [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824574|gb|EFF83356.1| hypothetical protein HMP0015_1143 [Acinetobacter haemolyticus ATCC
           19194]
          Length = 265

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 43/99 (43%), Gaps = 11/99 (11%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-RKLQLIHAKRKLQLNVEDLSCHKIAD 793
           +  Q E+ +      K  + + + +++E+  E  + + +   + + +L        KI  
Sbjct: 1   MREQLEQKRLAWQAAKSDREHYLDQLKELNAELLQDVSIEIKEHQQKLEKAQQQFEKIGA 60

Query: 794 VNF--------MSHIISEVD--SKELKSVMDALQKKIQS 822
           VN         +S    E++   ++L++ +D L+  ++S
Sbjct: 61  VNLAASQEYEEVSQRFDELNHQMQDLQNTVDQLKAAMKS 99


>gi|289596791|ref|YP_003483487.1| phosphoesterase RecJ domain protein [Aciduliprofundum boonei T469]
 gi|289534578|gb|ADD08925.1| phosphoesterase RecJ domain protein [Aciduliprofundum boonei T469]
          Length = 477

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I+    S++    V       L+D+  N   + R ++  +GG GGG   ++A +G     
Sbjct: 402 IIAFANSEDGNIKVSARAPRALVDKGLNLSIIMREASAEVGGYGGG--HNIA-AGASIPK 458

Query: 884 KA-DQAIAGVASFLKK 898
              D+ +  V + +KK
Sbjct: 459 GKEDEFLDIVENMIKK 474


>gi|222083203|ref|YP_002542606.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4]
 gi|221738583|gb|ACM39421.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4]
          Length = 1145

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 17/170 (10%)

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDE 740
                G   +    G        ++ L   S ++I A IR  E  T  R        Q E
Sbjct: 338 PAMVDGEVKAVFELGFLHPVGDHVLALLERSSNTIAAAIRSAEFRTQLRTLLHETQRQTE 397

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL----------IHAKRKLQLNVEDLSCHK 790
           +L+     L+VS   +  +   + E   +L+              ++  +L  +     K
Sbjct: 398 ELQVQGEELRVSNEELEEQSRALKESQARLEQQQVELEQTNSQLEEQAQELERQKDDLEK 457

Query: 791 IAD-VNFMSHIISEVD---SKELKSVMDALQKKIQSGIIM--LVGISKEK 834
             D V   +  +       S  L ++   L+  + S +I+  L+  + ++
Sbjct: 458 ANDAVRLQAQEVERASRYKSDFLANMSHELRTPLNSSLILAKLLADNADE 507


>gi|242011150|ref|XP_002426318.1| hypothetical protein Phum_PHUM248030 [Pediculus humanus corporis]
 gi|212510395|gb|EEB13580.1| hypothetical protein Phum_PHUM248030 [Pediculus humanus corporis]
          Length = 2034

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 734 HLMGQDEKLKSLASFLKVSQGN-----VVGRVEEI---WEEYRKLQLIHAKRKLQLNVED 785
            L    E L  ++    V         +  +V ++    EE++K +      + Q   ++
Sbjct: 193 DLNKAQEMLAQISGTNNVEDSEAERTLLQEKVNKLEKELEEFKKRENEIEMLRKQSKSDN 252

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +S  +I+  N           K L+  +  L+K+
Sbjct: 253 MSIEEISRENECYKK-KLASMKCLEKQIQELKKR 285


>gi|149059047|gb|EDM10054.1| homer homolog 1 (Drosophila), isoform CRA_i [Rattus norvegicus]
          Length = 290

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 61/177 (34%), Gaps = 6/177 (3%)

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
           +        +     +++N    +  P VT+        A  A     +     +    +
Sbjct: 64  SQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPAQNALPFSHSSAISKHWEAEL 123

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR--ARSHLM 736
            +++  +  + ++ L    +V    + +  Y      +   +  +E ++ Q     SH  
Sbjct: 124 ATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHSHKT 183

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
              + ++ L   LKV +  +  R+++  +  R+LQ        +L   ++    +  
Sbjct: 184 ELSQTVQELEETLKVKEEEI-ERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLEG 239


>gi|110803654|ref|YP_699164.1| hypothetical protein CPR_1850 [Clostridium perfringens SM101]
 gi|110684155|gb|ABG87525.1| hypothetical protein CPR_1850 [Clostridium perfringens SM101]
          Length = 451

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            ++L  + E+LKS  + LK ++      VE++ +E ++++  +A+    + +       +
Sbjct: 170 IANLKKEIERLKSENNSLKSAKDKNSHEVEKLSKELKEVKSNNAELNKTIEISRNKEKNL 229

Query: 792 -ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             ++N +    + V+ KEL+     L++K  S    L  I  E K ++
Sbjct: 230 SNEINNLKSKNNNVE-KELR----DLKEKNNS----LSSIVNEAKKNL 268


>gi|297260956|ref|XP_001083662.2| PREDICTED: myosin-9-like [Macaca mulatta]
          Length = 1879

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 989  QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNK 1048

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +VN +   + E ++K  ++ + 
Sbjct: 1049 AEKQKRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQ 1107

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGGG 868
             +++K    +  L    ++ K        +  L++          +LA    KVL  G G
Sbjct: 1108 EMRQKHSQAVEELAEQLEQTKRV------KANLEKAKQTLENERGELANEV-KVLLQGKG 1160


>gi|281211708|gb|EFA85870.1| C2 calcium/lipid-binding region-containing protein [Polysphondylium
           pallidum PN500]
          Length = 1410

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T  + +     E  ++   R +EA     A  ++  Q+ +L +L   LK     +     
Sbjct: 506 TSRLEVEKKNLEEQLKHMQREMEANA--EAVHNVNQQEAELNTLQEKLKA----LTDEKT 559

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           ++ EE    +L       Q+       +               +++ L+  +  L++K++
Sbjct: 560 KLVEEVETQKLNIQSLNTQVADLQSKSN------------DNSEAENLQEKIKELEEKLK 607

Query: 822 SG 823
             
Sbjct: 608 DA 609


>gi|326205030|ref|ZP_08194880.1| 3D domain-containing protein [Clostridium papyrosolvens DSM 2782]
 gi|325984835|gb|EGD45681.1| 3D domain-containing protein [Clostridium papyrosolvens DSM 2782]
          Length = 263

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 25/75 (33%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
              Q ++L  L   LK     +  ++E++ ++ ++L+    +          S  K A V
Sbjct: 71  YKSQSDELGKLNKELKKQNEEIKKQLEDLKKQNKQLESTKRELADDNLQLQKSLKKAAAV 130

Query: 795 NFMSHIISEVDSKEL 809
                         L
Sbjct: 131 GVKPQSYKIYSGDNL 145


>gi|149722749|ref|XP_001503645.1| PREDICTED: filamin A interacting protein 1 [Equus caballus]
          Length = 1212

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGNVVGRVEEIWEEYRKLQL--- 772
           R+EA    +A       +E    LA+       L++    +  R+EE+ E  + LQ    
Sbjct: 297 RLEADFEHKASRFSQEHEEMNAKLANQESHNRQLRLKLVGLTQRIEELEETNKNLQKAEE 356

Query: 773 IHAKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKE 808
              + + ++   +  +   +A+V  +   + E++ K+
Sbjct: 357 ELQELREKIAKGECGNSSLMAEVENLRKRVLEMEGKD 393


>gi|197118682|ref|YP_002139109.1| DNA repair exonuclease SbcCD subunit C [Geobacter bemidjiensis Bem]
 gi|197088042|gb|ACH39313.1| DNA repair exonuclease SbcCD, C subunit, putative [Geobacter
           bemidjiensis Bem]
          Length = 987

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
             G    +    E  +R    R   I  ++A   L  + E L    + LK  +G++  + 
Sbjct: 700 HAGLDQAIKEAGEELVRFQADRDRYIANEKAAQELEKRQETLAKYQAKLKEIEGSLAAKR 759

Query: 761 EEIWEEYR---KLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDA 815
           EE+ +      + Q    K++    V  ++    +I  V      +   ++  L+ +   
Sbjct: 760 EELRQSVEGYDQAQHEAVKQQQVELVSAVATLTSEIGAVGEGISRLEG-ETAALREIAAE 818

Query: 816 LQKKI 820
           ++KK+
Sbjct: 819 IEKKL 823


>gi|19703613|ref|NP_603175.1| DNA repair protein recN [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19713719|gb|AAL94474.1| DNA repair protein recN [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 558

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-EIWEEYRKLQLIHAKRKLQLNVEDLS 787
           +  +  L    ++   +A  L  S+  +  ++E E+  E + L +  AK K+Q+N  +  
Sbjct: 349 KELKKELNKIKDEYDKIAEKLTNSRKEIAVKIENELLNELKFLNMEDAKLKVQINKLERM 408

Query: 788 CHK-IADVNFMSHIISEVDSKELKSVM 813
            ++   DV F        D K L  + 
Sbjct: 409 TNEGYDDVEFFISTNVGQDLKPLNKIA 435


>gi|254168837|ref|ZP_04875678.1| DHH family [Aciduliprofundum boonei T469]
 gi|197622274|gb|EDY34848.1| DHH family [Aciduliprofundum boonei T469]
          Length = 483

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I+    S++    V       L+D+  N   + R ++  +GG GGG   ++A +G     
Sbjct: 408 IIAFANSEDGNIKVSARAPRALVDKGLNLSIIMREASAEVGGYGGG--HNIA-AGASIPK 464

Query: 884 KA-DQAIAGVASFLKK 898
              D+ +  V + +KK
Sbjct: 465 GKEDEFLDIVENMIKK 480


>gi|115313137|gb|AAI24080.1| LOC553442 protein [Danio rerio]
          Length = 424

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE-EYRKLQLIHAKRKLQLNVEDLSC 788
                   +D+K+ +L   ++  Q  V+ ++E++ +   ++ +  ++++K     +    
Sbjct: 241 AVLKRYQTRDKKITALEDTVR-QQEKVIEKMEKLLDANLKERRKGNSEKKKAAMKQKDEE 299

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            K  ++  +       ++  L+  +D L+  +   II+
Sbjct: 300 EKRREIESVFV----AENSRLREELDRLRN-LPPPIII 332


>gi|75832035|ref|NP_446209.1| aminoacyl tRNA synthase complex-interacting multifunctional protein
           1 [Rattus norvegicus]
 gi|71051686|gb|AAH98675.1| Small inducible cytokine subfamily E, member 1 [Rattus norvegicus]
 gi|149025978|gb|EDL82221.1| small inducible cytokine subfamily E, member 1 [Rattus norvegicus]
          Length = 315

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR--VEEIWEEYRKLQLIHAKRKLQLN 782
             T       L  +  +   +  +LK     +  +  ++    E +KLQ+ +AK K ++ 
Sbjct: 10  MATNDAVLKRLEQKGAEADQIIEYLKQQVALLKEKAILQATLREEKKLQVENAKLKKEIE 69

Query: 783 VEDLSCHKIADVNFMSHI 800
                  +    N +  +
Sbjct: 70  ELKQELIQAEIHNGVKQV 87


>gi|31983828|ref|NP_858438.1| ORF298 [Sulfolobus islandicus]
 gi|12745204|gb|AAK06936.1| ORF298 [Sulfolobus islandicus]
          Length = 298

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +   +++++ L + +K +     G++    +E  K +    K K + N E     K+   
Sbjct: 150 ISNVEQRIQQLKTKMKTADKVTRGKISRKLKELYKKRSELYKMKNKTNAELKKFEKV--- 206

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSG 823
                +I   +  ELK  ++ L+ +I++ 
Sbjct: 207 ----TLIDNEEINELKKKIEDLKTQIKNT 231


>gi|297478458|ref|XP_002690127.1| PREDICTED: chromosome 6 open reading frame 204-like [Bos taurus]
 gi|296484208|gb|DAA26323.1| chromosome 6 open reading frame 204-like [Bos taurus]
          Length = 806

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 19/125 (15%)

Query: 714 SSIRAGIRRIE----AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
              +   RRIE     +        +  Q  +L+ L    K  Q  ++  VE+  EE++ 
Sbjct: 501 EQNKEKQRRIETLEKYLADLPTLDDVQSQSLQLQVLEEKNKSLQETLID-VEKKLEEFK- 558

Query: 770 LQLIHAKRKLQLN-VEDLSCHKIADVNFMSHIISE----------VDSKELKSVMDALQK 818
               + +++ QL   +      +  V  +   +            +D+K+L++  D L++
Sbjct: 559 --KQYQEKEAQLICQKKKEKELVTTVQSLQQKVERCLEDGIRLPMLDAKQLQNENDNLRQ 616

Query: 819 KIQSG 823
           + ++ 
Sbjct: 617 QNENA 621


>gi|295705256|ref|YP_003598331.1| AcrB/AcrD/AcrF family transporter [Bacillus megaterium DSM 319]
 gi|294802915|gb|ADF39981.1| transporter, AcrB/AcrD/AcrF family [Bacillus megaterium DSM 319]
          Length = 1012

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 76/179 (42%), Gaps = 18/179 (10%)

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL----ASFLKVSQGN 755
           S+  ++       E+ +    +R++ +T     +    Q + +  +    A+   VS   
Sbjct: 659 SNLDDLQKAAKQVENHLNKD-KRLKYVTN----NFSDKQKQLVVEVDPDKAAEYGVSGFQ 713

Query: 756 VVGRVEEIWE--EYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI--ISEVDSKEL 809
           ++G + +  +      L+L + KR +QL+ +    S  +I D+   +    +   D  ++
Sbjct: 714 LLGTISDQTKPVSVGDLKLDNTKRAVQLSYDKDLSSVKEIKDLQVFTERGPVLVKDIADV 773

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           +++ D      +    +   +  + K   +  VT+D++D    +DL +  +  L GGGG
Sbjct: 774 RTI-DTFTSIQKLDGKVFARVEADIKGDDVQAVTKDVVDEVKKLDLPKDVS--LDGGGG 829


>gi|126282119|ref|XP_001366070.1| PREDICTED: similar to hCG21479, isoform 1 [Monodelphis domestica]
          Length = 2039

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            ++ ++ VRV  +E E+  +H +     + ++ T              +  + R+E +  
Sbjct: 583 RSQVSNEVRVKDIERENKSLHETITEMSSKLNKTEFEKKQLHKDFEHAKEKVERVEMM-- 640

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++    L  ++EKL    + +K+    V  +VE +  E   L+L + K +  L+      
Sbjct: 641 EKELHQLKRENEKLAQKMTSMKM----VTEKVEALENENGGLELENRKLRKSLDTLQNVS 696

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQ 817
            ++  +   +  + E +  EL+ +++ ++
Sbjct: 697 VQLEGLEKNNKQLDEENL-ELRKMLETMR 724


>gi|126282122|ref|XP_001366135.1| PREDICTED: similar to hCG21479, isoform 2 [Monodelphis domestica]
          Length = 2024

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            ++ ++ VRV  +E E+  +H +     + ++ T              +  + R+E +  
Sbjct: 576 RSQVSNEVRVKDIERENKSLHETITEMSSKLNKTEFEKKQLHKDFEHAKEKVERVEMM-- 633

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++    L  ++EKL    + +K+    V  +VE +  E   L+L + K +  L+      
Sbjct: 634 EKELHQLKRENEKLAQKMTSMKM----VTEKVEALENENGGLELENRKLRKSLDTLQNVS 689

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQ 817
            ++  +   +  + E +  EL+ +++ ++
Sbjct: 690 VQLEGLEKNNKQLDEENL-ELRKMLETMR 717


>gi|145519247|ref|XP_001445490.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412945|emb|CAK78093.1| unnamed protein product [Paramecium tetraurelia]
          Length = 742

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              +   ++KL+       +    +   + ++ ++ ++LQ  ++    Q    D   +KI
Sbjct: 392 MQKVSEINQKLQEQVDKRDLENKKLNEEIIQLRDKVKQLQKENSILLNQQQNNDSEMYKI 451

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                       +D+ ELKS ++ L+ +I  
Sbjct: 452 K------LHEMRIDNSELKSQIEQLKNEISK 476


>gi|119901210|ref|XP_617798.3| PREDICTED: chromosome 6 open reading frame 204, partial [Bos
           taurus]
          Length = 767

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 19/125 (15%)

Query: 714 SSIRAGIRRIE----AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
              +   RRIE     +        +  Q  +L+ L    K  Q  ++  VE+  EE++ 
Sbjct: 462 EQNKEKQRRIETLEKYLADLPTLDDVQSQSLQLQVLEEKNKSLQETLID-VEKKLEEFK- 519

Query: 770 LQLIHAKRKLQLN-VEDLSCHKIADVNFMSHIISE----------VDSKELKSVMDALQK 818
               + +++ QL   +      +  V  +   +            +D+K+L++  D L++
Sbjct: 520 --KQYQEKEAQLICQKKKEKELVTTVQSLQQKVERCLEDGIRLPMLDAKQLQNENDNLRQ 577

Query: 819 KIQSG 823
           + ++ 
Sbjct: 578 QNENA 582


>gi|325295023|ref|YP_004281537.1| 60 kDa chaperonin [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065471|gb|ADY73478.1| 60 kDa chaperonin [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 547

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 40/167 (23%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKE 808
           K    ++ GRV++I  E  K    + K KLQ  +  L       V  +     +E + KE
Sbjct: 336 KGKAEDIEGRVKQIKAELEKATSEYDKEKLQERLAKL----AGGVAIIKVGAATEAELKE 391

Query: 809 LKSVMDAL----QKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRF---------NAV 853
            K+ ++      +  ++ GI+           +++    +  DL+ +          + V
Sbjct: 392 KKARVEDALHATRAAVEEGIV------PGGGTALIAAAQKLEDLIKKLDEAGEVDKRHGV 445

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSG--GPNGNKADQAIAGVASFLKK 898
           ++ + + +         R   A +G  G      +  +  V  F+K+
Sbjct: 446 EIVKKAVEAPL------RQIAANAGYAG------EVIVEKVKEFIKE 480


>gi|121702755|ref|XP_001269642.1| eukaryotic translation initiation factor 3 subunit EifCa, putative
           [Aspergillus clavatus NRRL 1]
 gi|238685478|sp|A1CRE5|EIF3A_ASPCL RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 110 kDa subunit homolog; Short=eIF3
           p110; AltName: Full=Translation initiation factor eIF3,
           p110 subunit homolog
 gi|119397785|gb|EAW08216.1| eukaryotic translation initiation factor 3 subunit EifCa, putative
           [Aspergillus clavatus NRRL 1]
          Length = 1044

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI------- 773
           RR+     + A +  + + ++ +     ++  Q     + + + +E R+ +         
Sbjct: 607 RRVIIDKKKEAATDALQRKQREEETRKRIRTQQLQEAEK-QRLLDEQREREKKRIKDEQD 665

Query: 774 -HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV----MDALQKKIQSGI 824
              +++L+  +E+L    +  ++     + ++D+  L+++    ++  + ++   I
Sbjct: 666 RIRQQELKKQLEELKSG-VKGIDISELDLEDLDANRLRAIKLAQLEKEKNELNDKI 720


>gi|328773564|gb|EGF83601.1| hypothetical protein BATDEDRAFT_22429 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 3358

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 69/202 (34%), Gaps = 24/202 (11%)

Query: 639  VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
                +  N       M+   A        L   Y++    ++ +  +    +  L    H
Sbjct: 1868 CKHELHDNHEAHCVEMDALKASHEDHKISLNANYDEIYSQLTYQANEVQRLTMLLEEAQH 1927

Query: 699  V---------SSTGEIMLLYIVSESSIRAGIRRI-----EAITGQRARSHLMGQDEKLKS 744
                          E++ +  V   +I      +     E  T       L  + ++L++
Sbjct: 1928 NVAMAQEQHRDVESELLSIKHVHSEAIGQLNTNLSDQVAEFST-------LTAKAQQLEA 1980

Query: 745  LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH---II 801
              + LK S    V  + ++ +   K+Q  +   K  L   +L   ++   N +S      
Sbjct: 1981 ENTLLKQSVEKYVQEITQLQDSVTKVQDAYDLVKKNLGETELRLSELKAANLLSIDKSTN 2040

Query: 802  SEVDSKELKSVMDALQKKIQSG 823
            +++ +K+L+  +D L KK+   
Sbjct: 2041 ADIQTKQLQQNIDDLTKKLADA 2062


>gi|327354461|gb|EGE83318.1| eukaryotic translation initiation factor 3 subunit EifCa
           [Ajellomyces dermatitidis ATCC 18188]
          Length = 1068

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 52/119 (43%), Gaps = 20/119 (16%)

Query: 721 RRIEAITGQRA----RSHLMGQDEKLKSL-ASFLKVSQ-----GNVVGRV-EEIWEEYRK 769
           RRI     + A          ++E+LK + A  L+ ++        V R  + + +E  +
Sbjct: 607 RRIIIEKKKEAALESLQRKQQEEERLKRIRAQELQDAEKRRLHDEHVERERKRLQDEKDR 666

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV----MDALQKKIQSGI 824
           ++    K++L+     +    ++++N     + E+DS  L+++    ++  + ++   +
Sbjct: 667 IRQEELKKQLEELKTGVKGIDVSEIN-----LEELDSNSLRTIKLAQLEKEKNELNDRV 720


>gi|326669464|ref|XP_688712.4| PREDICTED: testis-expressed sequence 9 protein [Danio rerio]
          Length = 492

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR----KLQLNVE 784
            RA         +L  L    K        ++E +  E RKL+   A+     K QL + 
Sbjct: 399 NRALEEAEKTKTQLNKLKQSTKDLSSQEHQKIEALQAENRKLERQKAELIVGFKKQLKLI 458

Query: 785 DLSCHKI---ADVNFMSHIISEVDSKEL 809
           D+   +         +S    E   K L
Sbjct: 459 DILKRQKMHYEAAKLLSFTEEEF-MKAL 485


>gi|240047686|ref|YP_002961074.1| putative ABC transporter ATP-binding protein P [Mycoplasma
           conjunctivae HRC/581]
 gi|239985258|emb|CAT05271.1| Putative ABC transporter ATP-binding protein P [Mycoplasma
           conjunctivae]
          Length = 980

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IE + G     + + + E L  L    K +   +  +V E+  + + L+      K+ L 
Sbjct: 161 IEEVAGTA--KYKLDKQEALTKLEQT-KTAIEKIEIKVRELERQSKNLEKQAENAKIYL- 216

Query: 783 VEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
            E  S  +  +V  + + +++ ++K   LK  +  L +   S       +  EK   V++
Sbjct: 217 -EKSSALESVEVALIVNDLNDYNAKLTSLKQEISVLSQDDNSN-----NLEYEKNQQVIV 270

Query: 841 VVTE---DLLDRFN 851
             T    DL  + +
Sbjct: 271 ENTNIKQDLEKKIS 284


>gi|239609359|gb|EEQ86346.1| eukaryotic translation initiation factor 3 subunit EifCa
           [Ajellomyces dermatitidis ER-3]
          Length = 1074

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 52/119 (43%), Gaps = 20/119 (16%)

Query: 721 RRIEAITGQRA----RSHLMGQDEKLKSL-ASFLKVSQ-----GNVVGRV-EEIWEEYRK 769
           RRI     + A          ++E+LK + A  L+ ++        V R  + + +E  +
Sbjct: 607 RRIIIEKKKEAALESLQRKQQEEERLKRIRAQELQDAEKRRLHDEHVERERKRLQDEKDR 666

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV----MDALQKKIQSGI 824
           ++    K++L+     +    ++++N     + E+DS  L+++    ++  + ++   +
Sbjct: 667 IRQEELKKQLEELKTGVKGIDVSEIN-----LEELDSNSLRTIKLAQLEKEKNELNDRV 720


>gi|261188404|ref|XP_002620617.1| translation initiation factor eIF3a [Ajellomyces dermatitidis
           SLH14081]
 gi|239593217|gb|EEQ75798.1| translation initiation factor eIF3a [Ajellomyces dermatitidis
           SLH14081]
          Length = 1068

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 52/119 (43%), Gaps = 20/119 (16%)

Query: 721 RRIEAITGQRA----RSHLMGQDEKLKSL-ASFLKVSQ-----GNVVGRV-EEIWEEYRK 769
           RRI     + A          ++E+LK + A  L+ ++        V R  + + +E  +
Sbjct: 607 RRIIIEKKKEAALESLQRKQQEEERLKRIRAQELQDAEKRRLHDEHVERERKRLQDEKDR 666

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV----MDALQKKIQSGI 824
           ++    K++L+     +    ++++N     + E+DS  L+++    ++  + ++   +
Sbjct: 667 IRQEELKKQLEELKTGVKGIDVSEIN-----LEELDSNSLRTIKLAQLEKEKNELNDRV 720


>gi|94573474|gb|AAI16512.1| LOC553441 protein [Danio rerio]
          Length = 421

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 8/88 (9%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR----KLQLNVE 784
            RA         +L  L    K        ++E +  E RKL+   A+     K QL + 
Sbjct: 328 NRALEEAEKTKTQLNKLKQSTKDLSSQEHQKIEALQAENRKLERQKAELIVGFKKQLKLI 387

Query: 785 DLSCHKI---ADVNFMSHIISEVDSKEL 809
           D+   +         +S    E   K L
Sbjct: 388 DILKRQKMHYEAAKLLSFTEEEF-MKAL 414


>gi|326437223|gb|EGD82793.1| hypothetical protein PTSG_12024 [Salpingoeca sp. ATCC 50818]
          Length = 956

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              +E  K +    +     +   ++ +     E+ R+L+      K QL  E     K 
Sbjct: 406 AELEETEKEVKEAGEKKLAELHAEIQSLQDACDEQERELREKLPALKQQLEDETGELEKS 465

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            +   +    +E + +E+++ +DAL+ +++S    L G   + KA+
Sbjct: 466 LEKTKLEREAAEREQQEIRASLDALRNELKS----LEGEVADAKAA 507


>gi|156082581|ref|XP_001608775.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia bovis
           T2Bo]
 gi|154796024|gb|EDO05207.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia
           bovis]
          Length = 1102

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 59/546 (10%), Positives = 135/546 (24%), Gaps = 65/546 (11%)

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             +     +G    +  +      +              G P D++ D      L  +  
Sbjct: 85  MHWTGKWAKGSPYWNNHILDGTGLDDGTLSQW---LQALGFPKDMLNDKGPKNRLDQVIW 141

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF-IGYDLLRGSKFMKEDRK 474
             F   L               SG +             + F + Y     +        
Sbjct: 142 DGFRDMLFLGFLE--------PSGLSGDDVKDDNGNTARSPFGMNYAGFVHTAHRDSFNT 193

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                 P   ++  +  +           +  +G   ++      ++     +    G  
Sbjct: 194 DQATVFPNGTSSSSAGQIS-------ETNQHKNGAIFKLYILSCAYFTGLQKKGPPKGDN 246

Query: 535 IGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                   +            +          L++   +V      +  Q   NH     
Sbjct: 247 RNPKTIREILYWLSALPYSTAYPKILKHSIERLKSVAPVVGDKKQLSFYQTGRNH--PIT 304

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H          V+Q    +        +     IT    +    ++      +    T 
Sbjct: 305 VHEFNLFAHFQAVTQYCPLV-----LIGIQGGIHITKGTKEPPIHSLYANTECSFTYPTV 359

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            +   + +     AL    Y   +R         G        G+ V S G I  + +  
Sbjct: 360 SIQAYNQVVHYIRALFYQLY--FLRKQCAVKVTCGGKWRECRYGSGVVSKGVISWMCLGC 417

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
                    R+E + G+  +    G+ + +        V   +V+ ++ ++  +    Q 
Sbjct: 418 NPMEHDRKWRVEKVNGELGKVVSSGKSDDVA-------VKVKDVLEKIGDVVVQLGNAQE 470

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK-KIQSGIIMLVGIS 831
               +     +E +          +  +   +D K L+     L +    SG  +   ++
Sbjct: 471 ALEGKAESKVIEGVKEALEGAKQGLGQVNGGLDVK-LQEAKTKLGELTNGSGGALHTLVN 529

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
                S+  +   D        D  +  +                      +K  +AI G
Sbjct: 530 GGGAGSLQQIANADA-------DWKKEYSSA-------------------KDKISEAIDG 563

Query: 892 VASFLK 897
           V   L+
Sbjct: 564 VREVLR 569


>gi|294785492|ref|ZP_06750780.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
 gi|294487206|gb|EFG34568.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
          Length = 332

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 63/148 (42%), Gaps = 5/148 (3%)

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           +      +A I+ IE +   +  + +      L  +   L +++ +    +E + ++Y  
Sbjct: 105 VSDYELTKASIKLIEELATFKDCTVIKESKATLNYVKQNLNITEKDAKEFIELLGDDYYH 164

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++    K    L  +  S  KI +   +  I  E + K+L  +   L+ K  S II+ + 
Sbjct: 165 IKNETNKVATFLEGQPYSFEKIKN---LISIDKEYNMKDL--IESFLKTKNFSDIIIFLE 219

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLAR 857
            +K+  +  + ++T++L+       L +
Sbjct: 220 KNKDSYSGFIYMLTDELISLLKLASLIK 247


>gi|254167241|ref|ZP_04874094.1| SMC proteins Flexible Hinge Domain [Aciduliprofundum boonei T469]
 gi|197624097|gb|EDY36659.1| SMC proteins Flexible Hinge Domain [Aciduliprofundum boonei T469]
          Length = 1178

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              +  Q EKL+      +  + +V   +E+I  +   ++   A  + ++N         
Sbjct: 744 LKDIKKQIEKLEEEKRNYEELRESVRNEIEKIKSKIEDMEKEDANLRNRMN--------- 794

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
              N +   +S  + KEL++++D+L+  +Q+
Sbjct: 795 ---NLIPEKLSN-EIKELRNMVDSLRSNLQN 821


>gi|67483616|ref|XP_657028.1| myosin heavy chain [Entamoeba histolytica HM-1:IMSS]
 gi|56474266|gb|EAL51645.1| myosin heavy chain [Entamoeba histolytica HM-1:IMSS]
          Length = 2151

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             +A      Q+ +L++    LK    ++  ++E    E +KL+    + +   +  D + 
Sbjct: 1590 NKALEMKGDQNNQLQATNKELKAKNNDLTSKIEITENEMKKLENAKKRLEQDKDEADKAV 1649

Query: 789  HK 790
             +
Sbjct: 1650 SE 1651


>gi|326666641|ref|XP_001920325.3| PREDICTED: Golgin subfamily B member 1 [Danio rerio]
          Length = 3355

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 25/62 (40%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +     L   ++ +  L   ++     +    +++ EE  + ++   K K+Q   +  S 
Sbjct: 50  EEVLERLAQTEQLVVQLKELIREKDSQLASTEKQLKEEKEQAEIKFTKLKMQAKAKMASL 109

Query: 789 HK 790
           +K
Sbjct: 110 NK 111


>gi|315652973|ref|ZP_07905928.1| hypothetical protein HMPREF0381_2922 [Eubacterium saburreum DSM
           3986]
 gi|315484768|gb|EFU75195.1| hypothetical protein HMPREF0381_2922 [Eubacterium saburreum DSM
           3986]
          Length = 446

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 23/54 (42%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +   +       +L+S+    K +   +  R++E+ EE + L+  +   K +  
Sbjct: 7   KGLYNQFAEVMARLESVEKLYKKNVKTLNDRIDELTEENKALRKENKLLKDENA 60


>gi|308751682|gb|ADO45165.1| outer membrane chaperone Skp (OmpH) [Hydrogenobacter thermophilus
           TK-6]
          Length = 161

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 42/115 (36%), Gaps = 17/115 (14%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN----VEDLSCHKIADV 794
           +  L   +  +  +Q  +  +V++  ++  + Q    + K Q+      +     KI + 
Sbjct: 27  NRILSE-SKSVSQAQEQLRKKVQDYQKQLDEKQKKLDELKKQIESKGISQKAKEEKIKEY 85

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
             +     E+  K  K ++  L+ K++  I+         K      V E +  +
Sbjct: 86  QKVEAEGLELQQKAQKEIV-ELKSKLEEDIL--------NKVR---GVAESIAKK 128


>gi|261327218|emb|CBH10194.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 619

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDL 786
           ++A   +  Q + L+     L+    ++   +  + EE + LQ      + + +  ++  
Sbjct: 24  KKAVVTVTKQKQVLEQQNEQLRQQMTSIREELARVQEENKNLQRKLKTVELEAERKLKQA 83

Query: 787 SCHKIADVNFMSHIISEVDSKE 808
                     +S  +S  D  +
Sbjct: 84  VATSKTSWKGLSSFVSGADGTD 105


>gi|157952422|ref|YP_001497314.1| hypothetical protein NY2A_B118R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155122649|gb|ABT14517.1| hypothetical protein NY2A_B118R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 280

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 70/243 (28%), Gaps = 19/243 (7%)

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            E   + D     I                               +  ++S+   D    
Sbjct: 16  PENHHLVDESISWILNRGTYSDYEQMVTQLSFISHIDKFHLNMICKCHMISMNDLDTYKT 75

Query: 690 SSALC-GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
           +  +C  G      G        S         +I  +  +   +     D+    +   
Sbjct: 76  TFYMCGCGYKTIHPGNASRHKKTSCGHDMKSESKI-FLLQEDVMTQQRLSDDAYSKILEN 134

Query: 749 ----LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
               L++    +   ++ +    +KL+  + K K  L  ++L    +   ++   ++  +
Sbjct: 135 DIKNLEIDIKKLENDIKNLETNNKKLETENKKLKNLLINKELDTCDVDSDDYFPGLVYYI 194

Query: 805 DSKELKS------VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLAR 857
           + KEL +        D   KK++S   +           ++  V+ ++  D     D  +
Sbjct: 195 NDKELLTRGKIGRTADMNIKKLKSRYSIF------GNPLIVCFVSTNIKADEKKLKDAMK 248

Query: 858 LSA 860
            + 
Sbjct: 249 AAG 251


>gi|14521612|ref|NP_127088.1| alanyl-tRNA synthetase fragment [Pyrococcus abyssi GE5]
 gi|5458831|emb|CAB50318.1| alaRS-like alanyl-tRNA synthetase related protein (fragment)
           [Pyrococcus abyssi GE5]
          Length = 159

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 3/143 (2%)

Query: 585 INHSATHLLHHALSTILGSHV-SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             HSA H++  A+  +LG        + +  +     V   +  +  E++ IE+  N+ +
Sbjct: 9   RTHSALHVVKGAVVKVLGERAKWTYSTYVKGNRGVLTVKFDRKPSEEEIRRIEELANEKV 68

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N+P+    + RE+A        +   +     V  ++       +   C   HV  TG
Sbjct: 69  RENIPIKVYELPREEAEKRFG-EEMYDLFPVPEDVKILKVVVIEDWNVNACNKEHVKRTG 127

Query: 704 EIMLLYIVSES-SIRAGIRRIEA 725
           EI  + I         G+  +  
Sbjct: 128 EIGKIKIRKVRFRKSKGLLEVHF 150


>gi|315917401|ref|ZP_07913641.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691276|gb|EFS28111.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 493

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 15/126 (11%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKLKSLASFLKVSQG---NVV 757
           +I      +E   +  +     +TG   ++   +L   ++++  L   LK       +  
Sbjct: 109 DIKDSATQTEEKKKKDVSVQTVLTGKDIEKLEKNLKAYEKEMDKLNKELKDKADISNDKK 168

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             + ++ ++ + L+    KRK +            D+  +   I  ++SK     +D L+
Sbjct: 169 EEINKLNDKIKSLEEKLEKRKNEKIKGISD----KDILKLKDRIRGLESK-----IDTLK 219

Query: 818 KKIQSG 823
               S 
Sbjct: 220 NTSSST 225


>gi|313888414|ref|ZP_07822082.1| copper amine oxidase N-terminal domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845611|gb|EFR33004.1| copper amine oxidase N-terminal domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 784

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q + L       +     +  ++E   +   KL+   +K + ++  +D   +KI
Sbjct: 306 IKDLENQIKDLNDKKQEDQSKIDELKKKLESCKDNGEKLKQEKSKLEEEIRDKD---NKI 362

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 363 AQLNKEIEELKNSNNDELIAEITQLKDELK 392



 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/84 (10%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--------LNVEDLS 787
               +  K +      +   ++  + ++ +E ++LQ  +AK K           + ++ +
Sbjct: 360 NKIAQLNKEIEELKNSNNDELIAEITQLKDELKRLQDENAKLKEDYSSTKWELESEKEKT 419

Query: 788 CHKIADVNFMSHIISEVDSKELKS 811
                 +  M   +  ++ +  K 
Sbjct: 420 DKNENKIKEMQEKLESLEGELAKK 443


>gi|260943814|ref|XP_002616205.1| hypothetical protein CLUG_03446 [Clavispora lusitaniae ATCC 42720]
 gi|238849854|gb|EEQ39318.1| hypothetical protein CLUG_03446 [Clavispora lusitaniae ATCC 42720]
          Length = 1143

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 41/105 (39%), Gaps = 12/105 (11%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QLIHAKRKLQLNVEDLSC 788
           + +  +   + ++  L  + +        ++  + EE + L + + A    +  VEDLS 
Sbjct: 719 KVKQVISELNTEISDLKKYTEAQIHEATDKIHSLEEENKLLKEKLEAASFDKSKVEDLSQ 778

Query: 789 HKIADVNFMSHIISEVDSKEL-----------KSVMDALQKKIQS 822
                 + +  + S +   +L           K   DAL+ ++Q+
Sbjct: 779 ELAEKNSIIGELRSSIPPDDLSVEDEAAGVPKKGFTDALKYRLQN 823


>gi|242025299|ref|XP_002433063.1| Merozoite surface protein 1 precursor, putative [Pediculus humanus
           corporis]
 gi|212518579|gb|EEB20325.1| Merozoite surface protein 1 precursor, putative [Pediculus humanus
           corporis]
          Length = 1319

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-LQLIHAKRKLQLNVEDLSCHKIADV 794
               +K+  +A+        +  ++E +  E+ + ++ +   +K +    D S  +  + 
Sbjct: 188 AKSADKVNEIANNENDKAEEIKEKIENVNTEHDQTVEDLSVMKKAENENGDNSKSEPNNE 247

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
                 +     + LK +     + +++ ++  VG  K+     +I V + + D+  A  
Sbjct: 248 EQAVKNVLTEKIEHLKEMAVEKGEMMKNMVVETVGEIKDGVNDKIIAVNDMITDKLEAAK 307

Query: 855 LARLSAKVLGGGGGGGRPHMA 875
             ++    + G     + +MA
Sbjct: 308 --KMVVDKMEGK----KDNMA 322


>gi|159905096|ref|YP_001548758.1| phosphoesterase domain-containing protein [Methanococcus
           maripaludis C6]
 gi|159886589|gb|ABX01526.1| phosphoesterase RecJ domain protein [Methanococcus maripaludis C6]
          Length = 338

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 13/84 (15%)

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG- 882
             ++    ++++  + +   + +  + +   L    AK+LGG GGG     A++ G N  
Sbjct: 251 AFVVAARKRDREIRISVRSRKSISKKVHMGALMEKVAKMLGGQGGG----HAEAAGLNAP 306

Query: 883 --------NKADQAIAGVASFLKK 898
                      D  ++     L++
Sbjct: 307 WDKEKTKEEAIDSVLSVCIKSLEE 330


>gi|323651044|ref|YP_004243687.1| HK97 family phage major capsid protein [Bacillus subtilis subsp.
           natto]
 gi|323461684|dbj|BAJ77100.1| HK97 family phage major capsid protein [Bacillus subtilis subsp.
           natto]
          Length = 382

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A   L   +++++SL++  K     +   V ++  +  +L+    ++  + N + +  
Sbjct: 15  DEADELLKNAEKEVRSLSADEKSKFDELTADVTDLNNQISELESR--QKDGEKNEKTMEE 72

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            K+ +             KEL+ +   L+++    +  L   S+    
Sbjct: 73  RKVDNKE-----------KELRGIEQYLRRQDGEEVRALQTTSQGGAV 109


>gi|118084342|ref|XP_425585.2| PREDICTED: similar to GRIP and coiled-coil domain-containing 2
            [Gallus gallus]
          Length = 1693

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 14/102 (13%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-------EEYRKLQLIHAKRKLQL 781
            +R    L  Q +      S L  +  +++ RVE +         +  +LQ + AK + +L
Sbjct: 1053 ERQIDDLTRQLQVSSQQVSSLHSANEDLLARVETLQCNSKLLEAQILELQKVKAKAEKEL 1112

Query: 782  NVEDLSCH-KIADVNFMSHIISEVDS------KELKSVMDAL 816
              E L    KI + +     + E+        K L+ +M  L
Sbjct: 1113 EAEKLLKEQKIKEHSGTVRELEELQMQLQKEKKYLQKIMQEL 1154


>gi|146339314|ref|YP_001204362.1| putative chemotaxis protein methyltransferase [Bradyrhizobium sp.
           ORS278]
 gi|146192120|emb|CAL76125.1| putative chemotaxis protein methyltransferase [Bradyrhizobium sp.
           ORS278]
          Length = 1058

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 727 TGQRAR---SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           +G  A     H+   + +L++    L+ +   +    EE+     + Q ++ + +     
Sbjct: 643 SGSSALVRSEHVERLESELRATRERLQATIEELESTNEELKSSNEEYQSLNEELQSANEE 702

Query: 784 EDLSCHKIADVNFMSHIISEVDSK------ELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            + S  ++  VN     ++ V+ +      EL      L+  ++S  I  V +  + +  
Sbjct: 703 LETSREELQSVN---EELTTVNGELAHRVQELTRATSDLKNFLESTQIATVFVDNDLRVM 759


>gi|13928988|ref|NP_113895.1| homer protein homolog 1 [Rattus norvegicus]
 gi|38604638|sp|Q9Z214|HOME1_RAT RecName: Full=Homer protein homolog 1; AltName: Full=PSD-Zip45;
           AltName: Full=VASP/Ena-related gene up-regulated during
           seizure and LTP 1; Short=Vesl-1
 gi|3834627|gb|AAC71032.1| homer-1c [Rattus norvegicus]
 gi|3869003|dbj|BAA34311.1| PSD-Zip45 [Rattus norvegicus]
 gi|7242811|emb|CAB77250.1| Homer-1c protein [Rattus norvegicus]
 gi|149059036|gb|EDM10043.1| homer homolog 1 (Drosophila), isoform CRA_d [Rattus norvegicus]
 gi|149059037|gb|EDM10044.1| homer homolog 1 (Drosophila), isoform CRA_d [Rattus norvegicus]
 gi|149059038|gb|EDM10045.1| homer homolog 1 (Drosophila), isoform CRA_d [Rattus norvegicus]
          Length = 366

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 714 SSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             +   +  +E ++ Q     SH     + ++ L   LKV +  +  R+++  +  R+LQ
Sbjct: 235 ERLHKRVTELECVSSQANAVHSHKTELSQTVQELEETLKVKEEEI-ERLKQEIDNARELQ 293

Query: 772 LIHAKRKLQLNVEDLSCHKIAD 793
                   +L   ++    +  
Sbjct: 294 EQRDSLTQKLQEVEIRNKDLEG 315


>gi|327261827|ref|XP_003215729.1| PREDICTED: filamin-A-interacting protein 1-like [Anolis
           carolinensis]
          Length = 1170

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              +  ++ K++SL    KV QG V+   E++ +E +KL       KL+  +E+     +
Sbjct: 509 MDKIKQEERKVESLNKNFKVEQGKVMEVTEKLIDESKKL------LKLKSEMEEKVSSLM 562

Query: 792 ADVNFMSHIISEVDSK--ELKSVMDALQKKIQ 821
            + + +   +   + K  EL   ++ L+KKI 
Sbjct: 563 KERDELIGKLKGEEEKSLELNCAVEQLKKKID 594


>gi|257466244|ref|ZP_05630555.1| membrane protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 738

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 52/453 (11%), Positives = 125/453 (27%), Gaps = 36/453 (7%)

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYG 453
           L    +   + A    G     F   + +  S               KI      K +  
Sbjct: 29  LNKSNIVYAMGADNNHGQYKTKFIVNMIDNTSNQNISKAYYEDKLKFKINILKEFKLEGN 88

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            T F  YD +        +R    +       N   +    I   G  ++   + Q   V
Sbjct: 89  LTSFDRYDEMFTEADFDTERTGNTRFTSKKEFNYYKATGVNI-GSGIFLDFIENNQDYYV 147

Query: 514 VFDQTPFYAEAGGQLG---DTGCA----------IGDGIRLQITDVQKKAEGIFVHHAIV 560
              +      +  ++    DT             I     ++    ++  + +   +  +
Sbjct: 148 GSIEEHIRTYSDNKIYHILDTPVYKLNRDIVKTKIDYDGEIKEESKKEIIKKVKEANPNI 207

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                       L I+  NR    + +   ++             +             D
Sbjct: 208 NNLKEIKIEKDKLIIETWNRYHTGLPYITFNVDDLITRVTSVDTQTDKTEKKDSSVQTDD 267

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRV 678
            +     T  + +       +   +     T+  +    + +    +L       D    
Sbjct: 268 KSKKDSATQTKAEVKVKYFFED-GKVYKEFTKTFDVGYVLDASELDMLPDNMKFLDDFAT 326

Query: 679 VSVEYEDGGVHSSA--LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARS 733
             V+ +D  +      L    +  +  +I      +E   +  +     +TG   ++   
Sbjct: 327 YKVKGKDDEIIRKVSYLNKDENTQTEKDIKDSATQTEEKKKKDVSVQTVLTGKDIEKLEK 386

Query: 734 HLMGQDEKLKSLASFLKVSQG---NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           +L   ++++  L   LK       +    + ++ ++ + L+    KRK +     +    
Sbjct: 387 NLKAYEKEMDKLNKELKDKADISNDKKEEINKLNDKIKSLEEKLEKRKNE----KIKGIS 442

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             D+  +   I  ++SK     +D L+    S 
Sbjct: 443 DKDILKLKDRIRGLESK-----IDTLKNTSSST 470


>gi|255542291|ref|XP_002512209.1| myosin XI, putative [Ricinus communis]
 gi|223548753|gb|EEF50243.1| myosin XI, putative [Ricinus communis]
          Length = 1529

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQG------NVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            ++        +E  K     LK ++        +   +E +      L+  +   + Q  
Sbjct: 971  KKIEQFEDKCNELEKESKERLKEAEEAQLKTMQLQETIERLELNLSNLESENQVLRQQAL 1030

Query: 783  VEDLSCHKIADVNFMSHIISEVDS--KELKS 811
            V         ++N + H I +++S  + L+ 
Sbjct: 1031 VASTKEDLSEEINVLKHKIKDLESENESLRK 1061


>gi|168026730|ref|XP_001765884.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682790|gb|EDQ69205.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 555

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 23/145 (15%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  + E L++    L+V+  +      ++  +   L+  + K K +L    L+     
Sbjct: 316 KVLQSRIESLEAAKDMLEVNLKDETSARSQLVSQVFNLRKENEKLKTELETLKLNQ---- 371

Query: 793 DVNFMSHI--------ISEVDSKELKSVMDAL---QKKIQSGIIMLVGISKEKKASVLIV 841
              F+           + ++D   L + ++ L     K++S  + L    +E K      
Sbjct: 372 --KFLVRQPRSGGRIPVEKMD---LMNTVNQLLLEMNKLKSDKVTL---EEEIKTVRRCQ 423

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGG 866
           + + +     A D+A  ++  +G G
Sbjct: 424 MRDQMTRTVTARDVAMAASNKVGDG 448


>gi|47847498|dbj|BAD21421.1| mFLJ00279 protein [Mus musculus]
          Length = 1335

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 19/179 (10%)

Query: 701 STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
              E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 445 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNK 504

Query: 756 VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
              +  ++ EE   L+             ++L   +  +V+ +   + + ++K  ++ + 
Sbjct: 505 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLED-EAKTHEAQIQ 563

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGG 867
            +++K    +  L    ++ K        +  L++          +LA     +L G G
Sbjct: 564 EMRQKHSQAVEELADQLEQTKRV------KATLEKAKQTLENERGELANEVKALLQGKG 616


>gi|297569303|ref|YP_003690647.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925218|gb|ADH86028.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1295

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
             L   +E+L+     L+VS   +  R   + E+ R+LQ    + + +    ++S
Sbjct: 513 RALAASEERLQVQQEELRVSNEELEERSRSLAEKNRELQKARQELEEKARALEIS 567


>gi|83770538|dbj|BAE60671.1| unnamed protein product [Aspergillus oryzae]
          Length = 1056

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++A   +    +   S  + L+        +  +      KLQ    K KL+   +  
Sbjct: 910 AKEKATQDIQAVHDDYTSKCAALEKRAEEAEQKTGQ------KLQRELEKVKLEAKDQAE 963

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
              K  +   ++   ++ +  EL+  ++ L+ +++ 
Sbjct: 964 EARKAKENESVAQKSTQ-EIDELRKELEKLKSEVKE 998


>gi|295402610|ref|ZP_06812557.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312110974|ref|YP_003989290.1| hypothetical protein GY4MC1_1924 [Geobacillus sp. Y4.1MC1]
 gi|294975360|gb|EFG50991.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216075|gb|ADP74679.1| hypothetical protein GY4MC1_1924 [Geobacillus sp. Y4.1MC1]
          Length = 1461

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 1/103 (0%)

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G  V  T E      V    I   IR +           +   ++ +KS+A  L   Q  
Sbjct: 402 GKRVLVTSEKERALQVLRDKIPEEIRSLCVSVLGGDSRSVKEIEDSIKSIAENLDTKQIE 461

Query: 756 VVGR-VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           V+ + +E + EE  + +   AK    +N      ++  ++N +
Sbjct: 462 VLNKNIERLKEELHQTKRNIAKINTMINKAAEIENEKKNINGV 504


>gi|195567937|ref|XP_002107513.1| GD15514 [Drosophila simulans]
 gi|194204922|gb|EDX18498.1| GD15514 [Drosophila simulans]
          Length = 510

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 48/379 (12%), Positives = 94/379 (24%), Gaps = 34/379 (8%)

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
             EE R  AR  S  L       I     ++        Y+ L  ++   +       + 
Sbjct: 64  YFEELRQVARESSQKLIEWQPVDIAIDRVKEEPP-----YEGLGENQEEDQQELQEEHEK 118

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                +G    +    +  + + +    ++    ++ +      G           D   
Sbjct: 119 HEKRADGQQVDLSEKQEDQKEILDDRENEEYPDEYENSQQQLSQGSGSKRRAGLACDQCG 178

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            Q+  +      I   H    +  L        T   Q R  +   H     L   L  +
Sbjct: 179 KQVYKLPYLEAHIRSVHQGYSKPFLCRSCDKCFTRYEQLRSHMRNAHPQLEQLQQELRDL 238

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           +    ++  S     G        +     E   +       +  +L        R    
Sbjct: 239 ICELCNRQYSTKNALGEHLKRHAQRKEHVCEHCGVAKVTRTELLTHLRTHNPTWERFKCE 298

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS------------TGEIMLL 708
                    +  +  VRVV                GTH S             +GE    
Sbjct: 299 QCPQLFRHKSAISRHVRVVHEGQRRFQCGHCEKKFGTHASQVRHERLHTESTGSGEAAEE 358

Query: 709 YIVSESSIRA----------GIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVV 757
           +  +    +            +RR       RAR     + E+ +      +   +    
Sbjct: 359 WPFACIHCQKPCVSRQTLELHLRR------HRARKTHRKRREQSRESQEQEQEHGRDQHQ 412

Query: 758 GRVEEIWEEYRKLQLIHAK 776
              E   E+ RK + +  +
Sbjct: 413 DAREAQQEQLRKRKKLRQR 431


>gi|28190708|gb|AAO33171.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 442

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 52/138 (37%), Gaps = 38/138 (27%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQ 780
           E + G+RA   L      LK L    K+   ++  ++E + E  ++++ I+ +    KL+
Sbjct: 255 ELVPGKRA-QTLGEMKATLKELEKIRKL--VDLEKKLETMGELKKEIEKINEEGELLKLE 311

Query: 781 LNVEDLSCHKI-----------------------ADVNFMSH---IISEVDSKE------ 808
             +++ +  +I                        +V  +      ++ ++         
Sbjct: 312 AKIQEEAKAEITTLKSAERYGTLKENLKELEKKLGEVKSLGALKWQVAGIEPGTGSQGGK 371

Query: 809 LKSVMDALQKKIQSGIIM 826
           ++ + D L+ K+   + +
Sbjct: 372 IQKLADKLKNKLGELVAI 389


>gi|73952183|ref|XP_546050.2| PREDICTED: similar to Homer protein homolog 1 (VASP/Ena related
           gene up-regulated during seizure and LTP) (Vesl-1)
           isoform 1 [Canis familiaris]
          Length = 366

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 24/131 (18%)

Query: 714 SSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             +   +  +E ++ Q     +H    ++ ++ L   LKV +  +  R+++  +  R+LQ
Sbjct: 235 ERLHKRVTELECVSSQANAVHTHKTELNQTIQELEETLKVKEEEI-ERLKQEIDNARELQ 293

Query: 772 LIHAKRKLQLNVEDLSCHKIADV-------------------NFMSHIISEVDSK--ELK 810
                   +L   ++    +                      N +  ++  +D K  EL 
Sbjct: 294 EQRDSLTQKLQEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELT 353

Query: 811 SVMDALQKKIQ 821
            + D L K ++
Sbjct: 354 ELRDNLAKLLE 364


>gi|297466582|ref|XP_002704562.1| PREDICTED: centromere protein E [Bos taurus]
 gi|297475665|ref|XP_002688141.1| PREDICTED: centromere protein E, 312kDa [Bos taurus]
 gi|296486796|gb|DAA28909.1| centromere protein E, 312kDa [Bos taurus]
          Length = 2695

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 44/120 (36%), Gaps = 29/120 (24%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--------------QLIHAKRK 778
              L    E L+     LK +   +V  ++E+ EE  +L              ++ + K++
Sbjct: 1588 DELERVQEALQKETDQLKENTKEIVADIQELQEEEHQLLEMKDVSETWEKICEMENLKKQ 1647

Query: 779  LQLNVEDLSCHKIADVNFMSHIISEV--------DSKELKSV-------MDALQKKIQSG 823
            L+     L   +  ++     +   +        +  +L+++       +D L++ ++  
Sbjct: 1648 LEAQKSTLENTEWENIKLTQRLNENIAEIRSVTKERDDLRNMEETLKVEIDQLKENLRET 1707


>gi|145503079|ref|XP_001437517.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404667|emb|CAK70120.1| unnamed protein product [Paramecium tetraurelia]
          Length = 637

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 26/64 (40%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              +    +        L+ +  ++  +++++ E+ + L+  + + K Q  + +    + 
Sbjct: 428 LKLVSDSPQSSDKFQQILENNNKSLEQKIKQLREKIKNLESENYRVKKQSLILEAENEEA 487

Query: 792 ADVN 795
            D N
Sbjct: 488 VDKN 491


>gi|302332588|gb|ADL22781.1| ATPase subunit of an ATP-dependent protease, ClpB [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 869

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++ ++ E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIAKLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|291571004|dbj|BAI93276.1| threonyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 604

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  I+ + 
Sbjct: 32  HTTSHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFTEQDLKAIKKEMVKILKRK 90

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVR---VVSVEYEDGGVHSSALCGGTHVSSTG 703
           LPV+   ++RE+A        LG  Y   +       +     G     LC G HV +TG
Sbjct: 91  LPVIREEVSREEAQRR--IETLGEPYKLEILADLTEPITIYHLGDQWWDLCAGPHVETTG 148

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           +I     +   S+     R     G   ++ L                +   +      +
Sbjct: 149 DINP-KAIELESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLAEYKRRK 195

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++R+L    
Sbjct: 196 EEALRRDHRRLGKEL 210


>gi|315497728|ref|YP_004086532.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB
           48]
 gi|315415740|gb|ADU12381.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB
           48]
          Length = 1152

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 16/124 (12%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE---EYRKLQLIHAKRKLQLN- 782
           T Q        Q E+L++ A  L+V+   +  +   + E      + Q    +  +QL+ 
Sbjct: 392 TQQNLLEETQRQSEELQTQAEELRVNNEELEEQSRALKESHLRLEQQQAELEQTNVQLSE 451

Query: 783 -------VEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIM--LVGI 830
                   +D      AD+   +  + +     S  L ++   L+  + S +I+  L+  
Sbjct: 452 QARILEQQKDDLNRSAADIALKAQELEQASRYKSDFLANMSHELRTPLNSSLILAKLLAD 511

Query: 831 SKEK 834
           +++ 
Sbjct: 512 NRDG 515


>gi|38636442|emb|CAE81978.1| related to vesicular transport protein [Neurospora crassa]
          Length = 1150

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRK 769
           +  +    +RIE +  QR         E++++L   LK      V    R++E+ +E ++
Sbjct: 586 QEELADKDQRIERLAKQR--KTEEDLREEIENLQDSLKEIGFEHVETKQRLKELEQEKKE 643

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           L+    + + ++     +     ++   S        + L+   D L++K
Sbjct: 644 LKARIDELEKEVEAAASTAQT--NIKLQSEH------ESLRQEFDDLKQK 685


>gi|323388545|gb|ADX60077.1| bHLH transcription factor [Zea mays]
          Length = 252

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +L+S A  LK S  N+  +++E+  E  +L+    + K +    +    
Sbjct: 136 ELRSEAKKLKDSNENLQEKIKELKAEKNELRDEKQRLKAEKESLEQQIK 184


>gi|322693867|gb|EFY85713.1| putative vesicular transport protein [Metarhizium acridum CQMa 102]
          Length = 1125

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 26/105 (24%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEI--------------WEEYRKLQLIHAKRK- 778
            +  +D++++ L+   K  + ++   +E +               E+ ++L+   AK K 
Sbjct: 568 AVEEKDQQIEKLSKRRKT-EEDLREEIENLRENLVNIGQDHVEAKEKIKELEQEKAKLKE 626

Query: 779 ----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
               L+  V     +  ++  F      + D   L+   D L+ K
Sbjct: 627 HIAELEAQVGSSKSNATSNAKF------QEDLDALRKEYDDLRDK 665


>gi|319776944|ref|YP_004136595.1| hypothetical protein MfeM64YM_0212 [Mycoplasma fermentans M64]
 gi|318038019|gb|ADV34218.1| Hypothetical Protein MfeM64YM_0212 [Mycoplasma fermentans M64]
          Length = 954

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQG--NVVGRV-------EEIWEEYRKLQLIHAKRKLQ 780
             +  +  ++ ++K L   LK      ++  ++       E++ +E  +L       K  
Sbjct: 503 EVKQKINQKNNEIKDLEEQLKSDPSNQDLKDKLAKTKEQQEKLVKERNELFKEINNFKNN 562

Query: 781 LNVEDLSCHKIAD--VNFMSHIISEVDSKELKSVMDA 815
           +N        + +    F++    E   KE K  +DA
Sbjct: 563 INATKKQLQNVKNKLWKFITQKAKEDKLKETKETIDA 599


>gi|220679017|emb|CAX13405.1| homer homolog 1 (Drosophila) [Danio rerio]
          Length = 360

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              RA+   M + ++    A  L+  +  +  ++E+     ++L+   +  + +L    +
Sbjct: 264 CTLRAKEEEMMRLKEEVENAKQLQAQKDELTKKLEDTDMRNKELEEQLSDLEQRLESSQV 323

Query: 787 SCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSG 823
               +     +  ++  +D K  EL  + D L K I+  
Sbjct: 324 DQENLR--KNLKTLLEILDGKIFELTELRDNLAKLIEDS 360


>gi|292614130|ref|XP_002662151.1| PREDICTED: homer protein homolog 1 [Danio rerio]
 gi|220679016|emb|CAX13404.1| homer homolog 1 (Drosophila) [Danio rerio]
          Length = 398

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              RA+   M + ++    A  L+  +  +  ++E+     ++L+   +  + +L    +
Sbjct: 302 CTLRAKEEEMMRLKEEVENAKQLQAQKDELTKKLEDTDMRNKELEEQLSDLEQRLESSQV 361

Query: 787 SCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSG 823
               +     +  ++  +D K  EL  + D L K I+  
Sbjct: 362 DQENLR--KNLKTLLEILDGKIFELTELRDNLAKLIEDS 398


>gi|168027962|ref|XP_001766498.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682407|gb|EDQ68826.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 615

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 13/169 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+  H+L  A+  +        G  I   G  +D    +  T  +LK I+  ++ II++N
Sbjct: 48  HTTAHVLAMAVQKLFPEAQVTIGPWI-EKGFYYDFDMKEAFTEKDLKKIKKEMDRIISRN 106

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRV----RVVSVEYEDGGVHSSALCGGTHVSST 702
           LP+V   ++RE+A        +   Y   +    +   +     G     LC G HV  T
Sbjct: 107 LPLVREEVSREEAERR--IKAINEPYKLEILEGIKSEPITIYRIGEDWWDLCAGPHVERT 164

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
           G++    I  ES   A   R     G      L             LK 
Sbjct: 165 GQLNKRAIELESVAGA-YWR-----GDEKNQMLQRVYGTAWETEEQLKA 207


>gi|53749662|ref|NP_001002496.2| homer homolog 1 [Danio rerio]
 gi|50417078|gb|AAH77128.1| Homer homolog 1 (Drosophila) [Danio rerio]
          Length = 398

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              RA+   M + ++    A  L+  +  +  ++E+     ++L+   +  + +L    +
Sbjct: 302 CTLRAKEEEMMRLKEEVENAKQLQAQKDELTKKLEDTDMRNKELEEQLSDLEQRLESSQV 361

Query: 787 SCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSG 823
               +     +  ++  +D K  EL  + D L K I+  
Sbjct: 362 DQENLR--KNLKTLLEILDGKIFELTELRDNLAKLIEDS 398


>gi|256818988|ref|YP_003140267.1| peptidase M16 domain-containing protein [Capnocytophaga ochracea
           DSM 7271]
 gi|256580571|gb|ACU91706.1| peptidase M16 domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 975

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 52/419 (12%), Positives = 126/419 (30%), Gaps = 45/419 (10%)

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           +QF+G D     +  KE  K+       +     +  ++ + +  E   +        + 
Sbjct: 593 SQFLGTDKKSAEQLTKEFYKIASSFRISNSDEYTTVNIEGLQENFEAAVKLYEDFIANIK 652

Query: 515 FDQTPFYAEAGGQLG---DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            D+    A     +    D        ++         A+  + +          T   L
Sbjct: 653 VDEEALKALKARVVKSRIDAKANRNAIMQALTNYAMYGAKNKYNYTFSDAEIEAITGKEL 712

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           V  +   N  + ++ +     L    + +   H             +  V  +K     E
Sbjct: 713 VDKLKNLNNVEQTVIYYGPATLSELTNKLKTLH-------------KVPVKFAKVAPKKE 759

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            K +E   N ++  +       M + +         +     +   + +     GG   S
Sbjct: 760 FKQVEQAKNQVLFADY-----EMVQAET--RWIRNTVPFNPAESTVISAFNNYFGGGMGS 812

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            +      S           +    +A    + A  G +A        E ++++   L  
Sbjct: 813 LVFQTIRESKALAYSTYGFYASPRKKADKYYMLAYVGSQADKF----KEAVEAMNELLNT 868

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-LSCHKIA---DV-NFMSHIISEVDS 806
               +   ++    + ++ ++   +      +   L+  ++    D+   +   +  +  
Sbjct: 869 MP-ELPANLQLAKLQIKQ-EIETERITQDGIIYSYLAAQELGLKDDIRKQVYQNVDGITM 926

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           K++K+  D    K     ++L     EKK       ++D L +    D  +LS + L G
Sbjct: 927 KDIKAFHDKYLSKKPYTYVILAS---EKKL------SKDDLQKI--GDFKKLSLEELFG 974


>gi|320169056|gb|EFW45955.1| myosin-9 [Capsaspora owczarzaki ATCC 30864]
          Length = 1937

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E I G+     L  + ++ + + + L   +  +  ++ E+ E+   L+ I  K + +  
Sbjct: 904 LEGIVGE-----LEARLDEEEEIKAKLSTEKRKLEAQINEMEEKVNDLETIKQKLEQEKA 958

Query: 783 VEDLSCHKIAD 793
             +    KI D
Sbjct: 959 AREAQLKKIED 969


>gi|304317480|ref|YP_003852625.1| lipopolysaccharide biosynthesis protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778982|gb|ADL69541.1| lipopolysaccharide biosynthesis protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 323

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 27/63 (42%)

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + +  ++L+L   K  L     ++    I + N ++  + E D +    + D +    +S
Sbjct: 118 LLDTIKQLKLDTKKYTLDNFKNEIDVQAIDNTNLITIKVKESDPELAAKIADTIASNFKS 177

Query: 823 GII 825
            II
Sbjct: 178 YII 180


>gi|304316484|ref|YP_003851629.1| lipopolysaccharide biosynthesis protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777986|gb|ADL68545.1| lipopolysaccharide biosynthesis protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 312

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 27/63 (42%)

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + +  ++L+L   K  L     ++    I + N ++  + E D +    + D +    +S
Sbjct: 118 LLDTIKQLKLDTKKYTLDNFKNEIDVQAIDNTNLITIKVKESDPELAAKIADTIASNFKS 177

Query: 823 GII 825
            II
Sbjct: 178 YII 180


>gi|222056198|ref|YP_002538560.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
 gi|221565487|gb|ACM21459.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
          Length = 349

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 35/198 (17%)

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           + L      +++  G RR E  +   A +  L   + ++K L + L ++Q     +V E+
Sbjct: 82  VALTAEKENANLAMGDRRHEFSSDMEALTAKLNESETRVKELTTLL-LAQEEAAKKVPEL 140

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISEVDSKELKSVMD--ALQKKI 820
                  +   +     L     +  +I  DV  ++   S  + KE            +I
Sbjct: 141 QAAVADREERISNLNATLRSLKSNLIQIRTDVVQLAKKRSGSEEKENAYAAFRRDFSDQI 200

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
             G I++       K  +++ + E +        L R  +  +    GG +         
Sbjct: 201 GKGEILV--TEYPDK--LIVTMPEQV--------LFRSGSATIN--KGGKK--------- 237

Query: 881 NGNKADQAIAGVASFLKK 898
                  A+  VAS LKK
Sbjct: 238 -------ALERVASILKK 248


>gi|73952185|ref|XP_859691.1| PREDICTED: similar to Homer protein homolog 1 isoform 5 [Canis
           familiaris]
          Length = 364

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 24/131 (18%)

Query: 714 SSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             +   +  +E ++ Q     +H    ++ ++ L   LKV +  +  R+++  +  R+LQ
Sbjct: 233 ERLHKRVTELECVSSQANAVHTHKTELNQTIQELEETLKVKEEEI-ERLKQEIDNARELQ 291

Query: 772 LIHAKRKLQLNVEDLSCHKIADV-------------------NFMSHIISEVDSK--ELK 810
                   +L   ++    +                      N +  ++  +D K  EL 
Sbjct: 292 EQRDSLTQKLQEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELT 351

Query: 811 SVMDALQKKIQ 821
            + D L K ++
Sbjct: 352 ELRDNLAKLLE 362


>gi|17566052|ref|NP_507506.1| hypothetical protein Y59A8A.3 [Caenorhabditis elegans]
 gi|11065651|emb|CAC14400.1| C. elegans protein Y59A8A.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 676

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 724 EAITGQRARSHLMGQDEKLKSL-------ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           E +   +A  +    +++LK L       ++ LK  +     ++++  EE++KL     +
Sbjct: 263 ELVAAGKAVKNNEEHEKELKLLRSTNSSFSTELKTIRKEHEAQLQKKQEEWKKLHEQLEQ 322

Query: 777 RKLQLNVEDLSCHK 790
            K +L  E     +
Sbjct: 323 EKEKLISEKEHAKQ 336


>gi|85118791|ref|XP_965509.1| hypothetical protein NCU01878 [Neurospora crassa OR74A]
 gi|28927319|gb|EAA36273.1| predicted protein [Neurospora crassa OR74A]
          Length = 1120

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRK 769
           +  +    +RIE +  QR         E++++L   LK      V    R++E+ +E ++
Sbjct: 572 QEELADKDQRIERLAKQR--KTEEDLREEIENLQDSLKEIGFEHVETKQRLKELEQEKKE 629

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           L+    + + ++     +     ++   S        + L+   D L++K
Sbjct: 630 LKARIDELEKEVEAAASTAQT--NIKLQSEH------ESLRQEFDDLKQK 671


>gi|310801495|gb|EFQ36388.1| glucosidase II beta subunit-like protein [Glomerella graminicola
           M1.001]
          Length = 563

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 49/145 (33%), Gaps = 12/145 (8%)

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           + G     +C       +G   +      + I    RR+EA   + A      + + +  
Sbjct: 124 NDGHCDYDVCCDGTEEYSGVGGVKCENKCAEIGKEYRRVEA-ARKDAIDKAAKKRKTMAK 182

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            +  L+     V  +V  + +E + L++   + + +L+       +      +    S  
Sbjct: 183 ESRELRRR---VEAKVNTLKDEVKGLEIRKDELEQKLH----EIERSEKGKVVKGEGSGG 235

Query: 805 DSKELKSVMD----ALQKKIQSGII 825
               L ++       L++ ++  + 
Sbjct: 236 KLGTLLNLAKTRVTELRETLEDVVA 260


>gi|300855467|ref|YP_003780451.1| putative methyl-accepting chemotaxis protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300435582|gb|ADK15349.1| predicted methyl-accepting chemotaxis protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 571

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 55/167 (32%), Gaps = 26/167 (15%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +      + + +  L  +   V   +E + E   ++   + K        D +  +I   
Sbjct: 267 ISNSSTDISASSEELSATTEEVYASIETVNESTEQIAKGNEKLSAVTEEVDAAVQEINST 326

Query: 795 NF-MSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
              +++      S  KE+K+    ++ K ++ I          K        ++++    
Sbjct: 327 TAELANKADNASSSVKEIKARAAEVKTKAKADI------ENGDKIY--SEKHDNIVKAIE 378

Query: 852 AVDL---ARLSAKVLGGGGGGGRPHMA-QSGGPNGNKADQAIAGVAS 894
           A  +    ++ A  +G         +A Q    N    + AI   ++
Sbjct: 379 AGKVVDKVKVMADSIG--------DIAEQ---TNLLALNAAIEAASA 414


>gi|302783999|ref|XP_002973772.1| hypothetical protein SELMODRAFT_442211 [Selaginella moellendorffii]
 gi|300158810|gb|EFJ25432.1| hypothetical protein SELMODRAFT_442211 [Selaginella moellendorffii]
          Length = 795

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 86/238 (36%), Gaps = 28/238 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+  H++  A+ T+        G  I   G  +D    +P++  +LK I+  ++ II +N
Sbjct: 88  HTCAHVMAMAVQTLYPDAKVTIGPWI-EKGFYYDFDLKEPLSDKDLKKIKKEMDRIIGRN 146

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           LP+    ++RE+A        +  KY     + ++   +     G     LC G HV  T
Sbjct: 147 LPLRREEVSREEA--KDRIMSINEKYKLEILEDIKTEPITIYHIGNDWWDLCAGPHVERT 204

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G++     +   S+     R     G   R  L             LK            
Sbjct: 205 GQLNR-KAIELESVAGAYWR-----GDVKRQMLQRIYGTAWQTEEQLKA----------- 247

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            ++  ++       R+L  ++E  S  + A    +           ++ +++   KK+
Sbjct: 248 -YQTQKEEAKRRDHRRLGQDLELFSIQEDAGGGLVFWHPKGA---LIRHLIEDYWKKV 301


>gi|268326350|emb|CBH39938.1| hypothetical secreted protein, containing HAMP domain [uncultured
           archaeon]
          Length = 147

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE-EYRKLQLIHAKRKL 779
            R+E  TG      L         +AS LK     +V +  +I E E  +L+      + 
Sbjct: 48  YRVEVKTGDE----LEDLANSFNKVASDLKGYTKELVEKETKIRELEIERLEKYSRNLEQ 103

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           ++ + ++   +      +S I      K+L+     +++K    
Sbjct: 104 KVKMLEIKIDREKTKKAVSEITETEYFKKLREEAMDIREKRGKA 147


>gi|229824065|ref|ZP_04450134.1| hypothetical protein GCWU000282_01369 [Catonella morbi ATCC 51271]
 gi|229786419|gb|EEP22533.1| hypothetical protein GCWU000282_01369 [Catonella morbi ATCC 51271]
          Length = 173

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYRKLQLIHAKRKLQL 781
           +  + A  +L  + E L    S  + ++  +  +    +EE  +E   LQ   A  K Q+
Sbjct: 65  MANRAAIKNLNKEREALSKEQSSFETTKAELEAQYQANLEEKNQEIANLQKALADLKAQV 124

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             +  S  +  + + +   + +  ++EL+  +D  ++ +Q  
Sbjct: 125 EADSQSQAQEEETSDLEADLDQ-SAQELEDSVDEFEESLQDD 165


>gi|255549776|ref|XP_002515939.1| conserved hypothetical protein [Ricinus communis]
 gi|223544844|gb|EEF46359.1| conserved hypothetical protein [Ricinus communis]
          Length = 640

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 41/118 (34%), Gaps = 22/118 (18%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE-----------------YRKLQ 771
             ARS +    ++LKS A   K     +  RV  + EE                  + L+
Sbjct: 237 DAARSKIKLLRKRLKSEAGQNKEHILVLQKRVSRLQEEELKAAANDSDIKVKLQRLKDLE 296

Query: 772 LIHAKRKLQ----LNVEDLSCHKIADVNFMS-HIISEVDSKELKSVMDALQKKIQSGI 824
           +     +               ++     ++  ++ + +++ L+ + D L+++    +
Sbjct: 297 VEAEDLRNSNHRLTLENSELARQLESAKILANSVLEDPETEALRELSDKLKQENDHLV 354


>gi|194897421|ref|XP_001978652.1| GG17560 [Drosophila erecta]
 gi|190650301|gb|EDV47579.1| GG17560 [Drosophila erecta]
          Length = 512

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 55/379 (14%), Positives = 103/379 (27%), Gaps = 17/379 (4%)

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
              EE R  AR  S  L       I     ++    + +G +     + ++E+++     
Sbjct: 63  AYFEELRQVARESSQKLSEWQPMDIAVDRVKEEPPDEGLGENPEEKQQELEEEQEKRSDD 122

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
             ++L     +  + ++   E  E     Q  +    QT       G   +         
Sbjct: 123 LQVELVEKQENQ-QELLDDREDEEYPDEYQNSQQQLSQTAGSKRRAGLACN-------QC 174

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             Q+  +      I   H    +  L        T   Q R  +   H     L   L  
Sbjct: 175 GKQVYKLPYLEAHIRSVHEGYSKPFLCRSCDKCFTRYEQLRSHMRNAHPQLEQLQQELRD 234

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++    ++  S     G        +     E   +       +  +L        R   
Sbjct: 235 LICELCNRQYSTKNALGEHLKRHAQRKEHVCEHCGVAKVTRTELLTHLRTHNPTWERFKC 294

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                     +  +  VRVV                GTH S      L    + S   A 
Sbjct: 295 EQCPQLFRHKSAISRHVRVVHEGQRRFQCGHCEKKFGTHASQVRHERLHTESTGSGEAAK 354

Query: 720 IRRIEAI------TGQRARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEEYRKL 770
                 +        ++     + +    K+    +   K S+    GRV++  +E R  
Sbjct: 355 EWPFACVHCHKLCVSRQNLELHLRRHRMRKTHRKRMEQSKESEKQEHGRVQDQDQEARAA 414

Query: 771 QLIHAKRKLQLNVEDLSCH 789
                ++K +    DLS  
Sbjct: 415 HQEQLRKKKKPRRSDLSME 433


>gi|296876110|ref|ZP_06900164.1| chromosome segregation protein SMC [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432821|gb|EFH18614.1| chromosome segregation protein SMC [Streptococcus parasanguinis
           ATCC 15912]
          Length = 1178

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVV-GRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           QRA+       E+LK +   L+  +  +     + + EE   L    A+ +LQ    +  
Sbjct: 727 QRAQLAYQQSQEQLKEIQELLEALKSELATDATQSLQEELESLTEQLAEIELQKENLNRD 786

Query: 788 CHKIA-DVNFMSHIISEV 804
              +  D + +   +  +
Sbjct: 787 IETMKSDKDVLQQKVQNL 804


>gi|281345255|gb|EFB20839.1| hypothetical protein PANDA_016310 [Ailuropoda melanoleuca]
          Length = 1356

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  ++ ++K + + LK  + ++  +   ++E+ +E +  +    + K Q   +  S    
Sbjct: 935  LKEKENEMKRIEAILKERESDLSSKTKLLQEVQDENKLFKSEIEQLKQQNYQQAPSFPPH 994

Query: 792  AD-VNFMSHIISEV-----DSKELKSVM-------DALQKKIQSGIIMLVGISK--EKKA 836
             + +  +S    E+     +   LK  +       + L++K    +  L    K  + K 
Sbjct: 995  EELLKVISEREKEITGLQNELDSLKEAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKV 1054

Query: 837  SVLIVVTEDLLDRFNAVDL-ARLSAKVL 863
            +     +++      A++L A+   K L
Sbjct: 1055 N---KTSKERQQHVEAIELEAKEVLKKL 1079


>gi|221104279|ref|XP_002168826.1| PREDICTED: similar to GRIP and coiled-coil domain-containing
           protein 2 [Hydra magnipapillata]
          Length = 1304

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQ------GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
                    +LK+    LK ++         V  ++++ EE + L     K K +  +  
Sbjct: 604 LKTQQNISAELKASLDLLKENELSSEIKEKFVEEIKKLKEENKLLVEEIKKLKEENKLLS 663

Query: 786 LSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGI 824
               K+  ++F+S       +   ++ + + +++K+++  
Sbjct: 664 SEASKLN-ISFVSSEEELQSALNRIEELENGVKEKLENKA 702


>gi|156446649|gb|ABU63458.1| adhesion factor precursor [Finegoldia magna]
 gi|156446651|gb|ABU63459.1| adhesion factor precursor [Finegoldia magna]
          Length = 633

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 19/134 (14%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---- 768
           E  ++    RI  I        L  Q++ + SLA  L     +++  +E   E  +    
Sbjct: 346 EKQLKENYVRINII--------LKDQNQGINSLAGKLDA---DMIKEIENFAELSKSEQA 394

Query: 769 ----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               KLQ    K K + +       ++  V      + +   K ++ +         S  
Sbjct: 395 AAIAKLQKELNKLKEEYDKTKDEIKEVKSVYTYKFAVKDTAGKGVQGLSLTFTNIEDSTK 454

Query: 825 IMLVGISKEKKASV 838
           + +    +     V
Sbjct: 455 VYVGTSDENGDIVV 468


>gi|57641187|ref|YP_183665.1| ssDNA-specific exonuclease [Thermococcus kodakarensis KOD1]
 gi|57159511|dbj|BAD85441.1| ssDNA-specific exonuclease [Thermococcus kodakarensis KOD1]
          Length = 477

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 49/153 (32%), Gaps = 19/153 (12%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQ---------GNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
             H   +   L +    L                     ++ ++Y+K Q+   K  +Q  
Sbjct: 291 VRHEAREFATLLNATGRLNAGTLGVAICLGDEEAYKVARKMLDDYKKEQIEARKFIIQNW 350

Query: 783 VEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                        A  N    ++  + +      ++A     +  +++L    +++    
Sbjct: 351 NMVEEGEHAYVFYAGKNIRDTLV-GIAANM---AINAGLADPEKPVVVLADSDEDENLVK 406

Query: 839 LIVVT--EDLLDRFNAVDLARLSAKVLGGGGGG 869
               T  + L   ++  +  +  A+ LGG GGG
Sbjct: 407 GSARTTEKALEKGYHLGEALKEVAEKLGGEGGG 439


>gi|6323115|ref|NP_013187.1| Smc4p [Saccharomyces cerevisiae S288c]
 gi|29427672|sp|Q12267|SMC4_YEAST RecName: Full=Structural maintenance of chromosomes protein 4
 gi|1256888|gb|AAB67590.1| Ylr086wp [Saccharomyces cerevisiae]
 gi|1360455|emb|CAA97646.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285813506|tpg|DAA09402.1| TPA: Smc4p [Saccharomyces cerevisiae S288c]
          Length = 1418

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHK 790
             L  +   L  +   LK    N+   +    +E     LQL   + ++QL   +LS  +
Sbjct: 524 QLLEKERSILDDIKLSLKDKTKNISAEIIRHEKELEPWDLQLQEKESQIQLAESELSLLE 583

Query: 791 IADVNFMSHIISEVDSK---------ELKSVMDALQKKIQS 822
                 +   +  ++ K         EL+ ++  L+KK+ S
Sbjct: 584 ETQAK-LKKNVETLEEKILAKKTHKQELQDLILDLKKKLNS 623


>gi|170763957|ref|ZP_02636213.2| exonuclease SbcC [Clostridium perfringens B str. ATCC 3626]
 gi|170711356|gb|EDT23538.1| exonuclease SbcC [Clostridium perfringens B str. ATCC 3626]
          Length = 1172

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +A   L  +  + K +AS +K     +  ++ E+     +L++   K + +L ++    
Sbjct: 694 NKAEVILCEKIVREKEIASKVKELDKELKLKISELNSIKNELKIEDIKLENELILKKEKE 753

Query: 789 HKI--ADVNFMSHIISEVD--SKELKSVMDALQKKI 820
             +   ++  +   + E +    EL+   D L++  
Sbjct: 754 KNLLEKEIRILRTQLEESNKIKDELREKRDELKENY 789



 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  +   LK       + + N+   +E++ EE   L+ I  K       E + C KI
Sbjct: 651 LKSLEEEFNTLKDKIEEFNLKKENLEKNLEKLKEEKNNLENIFNK------AEVILCEKI 704

Query: 792 ADVNFMSHIISEVDSKELK---SVMDALQKKIQ 821
                ++  + E+D KELK   S +++++ +++
Sbjct: 705 VREKEIASKVKELD-KELKLKISELNSIKNELK 736


>gi|225848784|ref|YP_002728948.1| chromosome segregation protein SMC [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644251|gb|ACN99301.1| chromosome segregation protein SMC [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 1171

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 729 QRARSHLMGQDEKLKSLA---SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           + A   L  ++++L+ +    S  K   G +  + +++ E  ++L+    + +++LN   
Sbjct: 362 KEAEKTLEEKNKQLQEIEFLGSSAKNDLGEIEKQEKQLLETIKQLENEKTQYQIKLNTTQ 421

Query: 786 LSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSG 823
               KI ++N  ++    E+++  L+  ++ ++   +  
Sbjct: 422 ---EKINNLNQDLAKTKEEIEN--LEKTIENIKSNTKDT 455



 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 37/184 (20%)

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN----------VVGRVEEI 763
                 ++ IE + G  A++ L   +++ K L   +K  +               ++  +
Sbjct: 369 EEKNKQLQEIEFL-GSSAKNDLGEIEKQEKQLLETIKQLENEKTQYQIKLNTTQEKINNL 427

Query: 764 -------WEEYRKLQLIHAKRKLQLNVEDLSCH----KIADVNFMSHIISEVDSKELKSV 812
                   EE   L+      K               +I  +      +     K LK  
Sbjct: 428 NQDLAKTKEEIENLEKTIENIKSNTKDTQTQIQGLQSEITRLKVRKETLE----KRLKET 483

Query: 813 MDALQKKIQSGIIMLVGISK--EKKASVLIVVTEDLLDRFNAVDLA-------RLSAKVL 863
            + L+K  Q    +L  +S+  E K S+++     +  + +  +L        + + +V 
Sbjct: 484 REKLEKNFQKLAHILAQLSQFREDKISIILKSVPGVYGQVS--ELISLKDPMYQTAIEVA 541

Query: 864 GGGG 867
           GGG 
Sbjct: 542 GGGR 545


>gi|123454721|ref|XP_001315111.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121897778|gb|EAY02888.1| hypothetical protein TVAG_168900 [Trichomonas vaginalis G3]
          Length = 962

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKI 791
           +++   +EK++           N+   + E  ++   L+      K  + N+     +  
Sbjct: 349 NYIDELNEKVQQKEE----QNSNLNNAIAEKQQKNEALEKELQASKNSISNLAKEKSNLT 404

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV---LIVVTEDLLD 848
             +N +   + +  +K+ + +   ++  +Q+ ++ L   ++ + A +      +++D+  
Sbjct: 405 NTINDLKSKLDQK-AKDAQGLSSQIKS-LQNDLVQLKNENQNQIAKIKLEHAAISDDMNK 462

Query: 849 RFN 851
           + +
Sbjct: 463 KMH 465


>gi|303256550|ref|ZP_07342564.1| transcriptional regulator of multidrug-efflux transporter genes
           [Burkholderiales bacterium 1_1_47]
 gi|331000546|ref|ZP_08324217.1| transcriptional regulator, MerR family [Parasutterella
           excrementihominis YIT 11859]
 gi|302860041|gb|EFL83118.1| transcriptional regulator of multidrug-efflux transporter genes
           [Burkholderiales bacterium 1_1_47]
 gi|329571310|gb|EGG52999.1| transcriptional regulator, MerR family [Parasutterella
           excrementihominis YIT 11859]
          Length = 281

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN--VEDLSCHKIADVN 795
           +D  +  +   L+  +  +  +  E+    RKL+      K  L   ++++    +    
Sbjct: 79  RDRNVSGILELLEAQKMEIAAKQRELKITKRKLERRIQSIKDALGSPIDEIQLVTLDKQK 138

Query: 796 FMSH--IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
           F+     +   D+ +L+  +  L+K  +  ++ L       K  +   ++++
Sbjct: 139 FLLLETKLVNPDNDDLEMAVQELEKNQKDSLVFL------GKVGL--GISKN 182


>gi|156446653|gb|ABU63460.1| adhesion factor precursor [Finegoldia magna]
          Length = 634

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 19/134 (14%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---- 768
           E  ++    RI  I        L  Q++ + SLA  L     +++  +E   E  +    
Sbjct: 346 EKQLKENYVRINII--------LKDQNQGINSLAGKL---DSDMIKEIENFAELSKSEQA 394

Query: 769 ----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               KLQ    K K + +       ++  V      + +   K ++ +         S  
Sbjct: 395 AAIAKLQKELNKLKEEYDKTKDEIKEVKSVYTYKFAVKDTAGKGVQGLSLTFTNIEDSTK 454

Query: 825 IMLVGISKEKKASV 838
           + +    +     V
Sbjct: 455 VYVGTSDENGDIVV 468


>gi|118352590|ref|XP_001009566.1| Viral A-type inclusion protein repeat containing protein
           [Tetrahymena thermophila]
 gi|89291333|gb|EAR89321.1| Viral A-type inclusion protein repeat containing protein
           [Tetrahymena thermophila SB210]
          Length = 1262

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/89 (8%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
             L + L   +   + R+ ++ +E + ++    +R+ +   +  + ++   +  +   + 
Sbjct: 692 NQLTNQLSDLESERLKRINQLEQELKNIRKELEERRKKELQDQKNYYE-EQIKRLKASLE 750

Query: 803 EVDSKELKSV-------MDALQKKIQSGI 824
               + ++++       MD ++ + +  I
Sbjct: 751 GQTKEAVQTLESHYQREMDKVKDQYEEKI 779



 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL--QLNVEDL 786
           Q+++     + + LK L    + +  ++  ++ ++ EE R L++   K K   + + E L
Sbjct: 823 QKSKEKYENEIKDLKQLKEQNEKTIHDLQQKINKLEEELRLLKIEFTKYKKDHESDFEKL 882

Query: 787 SCHKIADVNFMSHIISEVDSKELKS---VMDALQKKIQSGI 824
               I     +   + +  +KEL++    ++ ++K+ ++ I
Sbjct: 883 KQEYIVREKQLQQKMEDELNKELENHLKFIEKMKKEYENLI 923


>gi|326483805|gb|EGE07815.1| M protein repeat-containing protein [Trichophyton equinum CBS 127.97]
          Length = 1187

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 65/226 (28%), Gaps = 27/226 (11%)

Query: 616  GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
                + THSK +        E   N           ++   E   +   A L       +
Sbjct: 856  KEDLESTHSKGVEELLAAHEEKLNNLRSEYEASSAEKLSAAEKNHSEIVAKLQADLEKAK 915

Query: 676  VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
                     D           +H S    +       E+       RI A  G  A+   
Sbjct: 916  ETAADTTSLDALKAEIEELKASHASQVETLTKEKAELET-------RINA-AGNSAKDAE 967

Query: 736  MGQDEKLKSLASFLKVSQGN-----------------VVGRVEEIWEEYRKLQLIHAKRK 778
              ++E +   A  LK +Q +                 +     E     ++++  +++ +
Sbjct: 968  AAREELIAKHAEELKAAQNDATKNNDAHAAALKEINRLKDAASEAQTNSQEVEKKYSQLE 1027

Query: 779  LQLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
              +    + +   +  +      +++ + K ++ +   L+   +S 
Sbjct: 1028 SDMAALSEKNMEMVEKIQEYEASVAKANRK-IRELEFDLKDAQKSA 1072


>gi|326474922|gb|EGD98931.1| hypothetical protein TESG_06294 [Trichophyton tonsurans CBS 112818]
          Length = 1187

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 65/226 (28%), Gaps = 27/226 (11%)

Query: 616  GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
                + THSK +        E   N           ++   E   +   A L       +
Sbjct: 856  KEDLESTHSKGVEELLAAHEEKLNNLRSEYEASSAEKLSAAEKNHSEIVAKLQADLEKAK 915

Query: 676  VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
                     D           +H S    +       E+       RI A  G  A+   
Sbjct: 916  ETAADTTSLDALKAEIEELKASHASQVETLTKEKAELET-------RINA-AGNSAKDAE 967

Query: 736  MGQDEKLKSLASFLKVSQGN-----------------VVGRVEEIWEEYRKLQLIHAKRK 778
              ++E +   A  LK +Q +                 +     E     ++++  +++ +
Sbjct: 968  AAREELIAKHAEELKAAQNDATKNNDAHAAALKEINRLKDAASEAQTNSQEVEKKYSQLE 1027

Query: 779  LQLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
              +    + +   +  +      +++ + K ++ +   L+   +S 
Sbjct: 1028 SDMAALSEKNMEMVEKIQEYEASVAKANRK-IRELEFDLKDAQKSA 1072


>gi|324510872|gb|ADY44542.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 556

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 15/113 (13%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI  L ++ + +I  G R        +A   +  Q   ++      K     ++ R++ +
Sbjct: 91  EIHRLKLIIDQTITDGER--------KALEQIEAQKRIIEE---EYKTHTAELMRRIDTL 139

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSV 812
            ++ R+L+      K +    ++       KI + + +   + E+    LK +
Sbjct: 140 QDDNRRLKGDLNTIKEKYRNLEIEYNTTLRKIDEKDLVIKRLEEIKGDLLKDL 192


>gi|319790193|ref|YP_004151826.1| chaperonin GroEL [Thermovibrio ammonificans HB-1]
 gi|317114695|gb|ADU97185.1| chaperonin GroEL [Thermovibrio ammonificans HB-1]
          Length = 548

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 24/128 (18%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKE 808
           K     +  R+++I  E  K    + K KLQ  +  L       V  +     +E + KE
Sbjct: 336 KGKPEEIEARIKQIKAELEKATSEYDKEKLQERLAKL----AGGVAIIKVGAATEAELKE 391

Query: 809 LKSVMDAL----QKKIQSGIIMLVGISKEKKASVLIVVT-EDLLDRF---------NAVD 854
            K+ ++      +  ++ GI+          A +   +  +DL+            + V+
Sbjct: 392 KKARVEDALHATRAAVEEGIV-----PGGGTALIAAAMKLDDLVKELDEKGEIDKKHGVE 446

Query: 855 LARLSAKV 862
           + + + + 
Sbjct: 447 IVKKAVEA 454


>gi|317155025|ref|YP_004123073.1| hypothetical protein Daes_3339 [Desulfovibrio aespoeensis Aspo-2]
 gi|316945276|gb|ADU64327.1| hypothetical protein Daes_3339 [Desulfovibrio aespoeensis Aspo-2]
          Length = 236

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + A   L    +++K L + L+     ++ +   +  E +  ++     +L  +  D+  
Sbjct: 144 KTAFVLLARSQKRMKELPAGLESLPEELIRQTRAL--EQKDAEIEEIALRLSFDTSDIKA 201

Query: 789 H-KIADVNFMSHIISEVDS-KELKSVMDALQK 818
             +I +   +       D  K L+  +D L+ 
Sbjct: 202 KLQILESELVRLRKDRRDMEKYLQEKIDRLKD 233


>gi|149059044|gb|EDM10051.1| homer homolog 1 (Drosophila), isoform CRA_h [Rattus norvegicus]
 gi|149059045|gb|EDM10052.1| homer homolog 1 (Drosophila), isoform CRA_h [Rattus norvegicus]
 gi|149059046|gb|EDM10053.1| homer homolog 1 (Drosophila), isoform CRA_h [Rattus norvegicus]
          Length = 302

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 714 SSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             +   +  +E ++ Q     SH     + ++ L   LKV +  +  R+++  +  R+LQ
Sbjct: 171 ERLHKRVTELECVSSQANAVHSHKTELSQTVQELEETLKVKEEEI-ERLKQEIDNARELQ 229

Query: 772 LIHAKRKLQLNVEDLSCHKIAD 793
                   +L   ++    +  
Sbjct: 230 EQRDSLTQKLQEVEIRNKDLEG 251


>gi|326530838|dbj|BAK01217.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 251

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              +  +    +L+S A  LK S  ++  ++ E+  E  +L+    K K +    +    
Sbjct: 126 AILNDAIRAVTELRSEAEKLKDSNESLQEKIRELKAEKNELRDEKQKLKAEKESLEQQIK 185


>gi|309358654|emb|CAS00174.1| hypothetical protein CBG_26825 [Caenorhabditis briggsae AF16]
          Length = 562

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 3/132 (2%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKLKSLASFLKVSQGNVVGRV 760
           EI  L       +  G   +    G     +      ++  L+     L+    ++    
Sbjct: 135 EIFRLKEHQFHMMMDGKNHLVGRFGTDVSDYFQEMIAKNRTLEDTVETLQDKVEDMEEDE 194

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            ++  E +KL+      K +        +   +         +   +EL+  +  L++  
Sbjct: 195 TKMQNEIKKLKEELEHEKRKNLELKEWMNLKEERLRELREEKDEKIEELRKEIQQLKESQ 254

Query: 821 QSGIIMLVGISK 832
            S I   + I  
Sbjct: 255 DSKIYAHISIEN 266


>gi|288818080|ref|YP_003432428.1| outer membrane chaperone [Hydrogenobacter thermophilus TK-6]
 gi|288787480|dbj|BAI69227.1| outer membrane chaperone [Hydrogenobacter thermophilus TK-6]
          Length = 175

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 42/115 (36%), Gaps = 17/115 (14%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN----VEDLSCHKIADV 794
           +  L   +  +  +Q  +  +V++  ++  + Q    + K Q+      +     KI + 
Sbjct: 41  NRILSE-SKSVSQAQEQLRKKVQDYQKQLDEKQKKLDELKKQIESKGISQKAKEEKIKEY 99

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
             +     E+  K  K ++  L+ K++  I+         K      V E +  +
Sbjct: 100 QKVEAEGLELQQKAQKEIV-ELKSKLEEDIL--------NKVR---GVAESIAKK 142


>gi|227499944|ref|ZP_03930037.1| cell-shape determining protein [Anaerococcus tetradius ATCC 35098]
 gi|227218053|gb|EEI83326.1| cell-shape determining protein [Anaerococcus tetradius ATCC 35098]
          Length = 297

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 13/93 (13%)

Query: 739 DEKLKSLASFLKVSQG------NVVGRVEEIWEEYRKLQLIHAKR-----KLQLNVEDLS 787
           ++   S++S +K          +    VE++ EE + L++ +AK      K      +  
Sbjct: 49  EKLSYSISSIIKEQVERSLGSKDTRAAVEKLEEENKALEIENAKLSTIVSKKDFLEAEKK 108

Query: 788 CHKIADVNFMSHIISEVDSKELKS--VMDALQK 818
             ++++ ++M   +   DS  +     +D  +K
Sbjct: 109 AMEVSENSYMKAKVVNTDSNSMSKNFTIDKGKK 141


>gi|227358294|ref|ZP_03842635.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906]
 gi|227161630|gb|EEI46667.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906]
          Length = 211

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
            ++K  A  LK     +V    +  E     + + A  KL   V+  +  +   + ++  
Sbjct: 59  SEIKRDAEALKKLGTELVELSAQELERVPLDEKLLASIKLAQKVQREARRR--QIQYIGK 116

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIML 827
           ++  VD + ++  +D L+ +    I++L
Sbjct: 117 LLRNVDEEPIRQALDKLKNRHNQQILVL 144


>gi|157363114|ref|YP_001469881.1| metal dependent phosphohydrolase [Thermotoga lettingae TMO]
 gi|157313718|gb|ABV32817.1| metal dependent phosphohydrolase [Thermotoga lettingae TMO]
          Length = 673

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSC--- 788
             L+  +E+L +L   LK S   +    EE+ +  + LQ    +  K Q    +L     
Sbjct: 288 EELLSANEELDALNQELKASFQELESLNEELQQTNKILQEKSEQVLKFQNAFLELLDISS 347

Query: 789 ----HKIADVNFMSHIISEVD--SKELKSVMDALQ-KKIQSGIIMLVGISKE 833
                 I + +F+  ++      +  L+ V  AL+  +    +I+L   S +
Sbjct: 348 KMTYESIQEKDFLFTLLKTFKNYADNLRHVGVALKSSEFGKTLIVLCKDSDD 399


>gi|110799531|ref|YP_694670.1| exonuclease SbcC [Clostridium perfringens ATCC 13124]
 gi|110674178|gb|ABG83165.1| exonuclease SbcC [Clostridium perfringens ATCC 13124]
          Length = 1172

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +A   L  +  + K +AS +K     +  ++ E+     +L++   K + +L ++    
Sbjct: 694 NKAEVILCEKIVREKEIASKVKELDKELKLKISELNSIKNELKIEDIKLENELILKKEKE 753

Query: 789 HKI--ADVNFMSHIISEVD--SKELKSVMDALQKKI 820
             +   ++  +   + E +    EL+   D L++  
Sbjct: 754 KNLLEKEIRILRTQLEESNKIKDELREKRDELKENY 789



 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  +   LK       + + N+   +E++ EE   L+ I  K       E + C KI
Sbjct: 651 LKSLEEEFNTLKDKIEEFNLKKENLEKNLEKLKEEKNNLENIFNK------AEVILCEKI 704

Query: 792 ADVNFMSHIISEVDSKELK---SVMDALQKKIQ 821
                ++  + E+D KELK   S +++++ +++
Sbjct: 705 VREKEIASKVKELD-KELKLKISELNSIKNELK 736


>gi|320580767|gb|EFW94989.1| glucoseamine-6- phosphate synthase [Pichia angusta DL-1]
          Length = 702

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 77/240 (32%), Gaps = 46/240 (19%)

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
              T I   +    + +   L          V V    G   S     G H+++  EI +
Sbjct: 432 RDDTCIFVSQSGETADSMMALKRCRAAGALTVGVVNSVGSSISRETDCGVHINAGPEIGV 491

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
               + +S    +  +         ++     E +K L          +  ++E+I ++ 
Sbjct: 492 ASTKAYTSQYIALVMLALQISNHVITNAKRHQEIIKGL--------EEIPTQIEKILQQS 543

Query: 768 RKLQLIHAKRK------------LQLNVEDLSCHKIADVNFMSHIISEVDSKELK----S 811
           +K++ I  K               Q         KI +++++      + + ELK    +
Sbjct: 544 KKIKEISEKYLHNKQSILVVGRGYQYASALEGALKIKEISYIHS--EGIQAGELKHGVLA 601

Query: 812 VMDALQKKIQSGIIMLVG---------------ISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++D    K+   I+                    +++ +  ++    + L+DR  A  + 
Sbjct: 602 LVD---DKLP--IVAFATQDSFSAKLNSAIQQITARDGRPIIIATEGDKLIDRSKASAVI 656


>gi|293569265|ref|ZP_06680563.1| threonyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291587971|gb|EFF19821.1| threonyl-tRNA synthetase [Enterococcus faecium E1071]
          Length = 646

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 9/167 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA HL+  A+  +  +     G  I              +T+ +L +IE  +  I+ +N
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKEN 132

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LP+  R++++++A+   A+     +  + +    V           LC G HV STG I 
Sbjct: 133 LPIERRVLSKQEALEIFASDPYKVELINELPEEEVITAYQQGEFIDLCRGPHVPSTGRIQ 192

Query: 707 LLYI-------VSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKS 744
           +  +          +S    ++R+   A   ++A    +   E+ K 
Sbjct: 193 VFKLLSVAGAYWRGNSNNQMMQRVYGTAFFDKKALKEYIRLREEAKE 239


>gi|197287444|ref|YP_002153316.1| hypothetical protein PMI3641 [Proteus mirabilis HI4320]
 gi|226705818|sp|B4EX40|Y3641_PROMH RecName: Full=UPF0307 protein PMI3641
 gi|194684931|emb|CAR47111.1| conserved hypothetical protein [Proteus mirabilis HI4320]
          Length = 186

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
            ++K  A  LK     +V    +  E     + + A  KL   V+  +  +   + ++  
Sbjct: 34  SEIKRDAEALKKLGTELVELSAQELERVPLDEKLLASIKLAQKVQREARRR--QIQYIGK 91

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIML 827
           ++  VD + ++  +D L+ +    I++L
Sbjct: 92  LLRNVDEEPIRQALDKLKNRHNQQILVL 119


>gi|56121854|ref|YP_145770.1| hypothetical protein pNOB8p32 [Sulfolobus sp. NOB8H2]
 gi|3882057|emb|CAA09142.1| hypothetical protein [Sulfolobus sp. NOB8H2]
          Length = 312

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           + +   +++++ L + +K +      ++     E  K +    K K ++N E     KI 
Sbjct: 149 AEINNVEQRIQQLKAKMKDADKVTKSKISIKLRELYKKRSELYKSKNKINAELRKFEKI- 207

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
                  +I   +  +LK  +  L+ +I+S 
Sbjct: 208 ------TLIDNEEINDLKKKVTELKSQIKST 232


>gi|1403726|gb|AAB49276.1| major surface protein 3-19 [Anaplasma marginale str. Florida]
          Length = 568

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 737 GQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             DE    L S L + +   +     V++  E  ++L+    + +L          K+ +
Sbjct: 120 NADEIEGELKSALGLERLEKLAELELVKQRLESMKELEKKIEEAQLTAEELREMREKLKE 179

Query: 794 VNFMSHIISEVDSKELKSV-----MDALQKKIQSGIIMLVGISKEKKASVLIVVT---ED 845
           +          D   LK        D L+K ++     ++   + KK+ ++  V    + 
Sbjct: 180 LAGR-----GEDPAGLKKAIEEANADELKKGLKE----VLKTLEGKKSELVREVGRLKKG 230

Query: 846 LLDRFNAVD-LARLSAKVLG 864
            L+   A   L       LG
Sbjct: 231 ALEEMKAGKGLVEEVKGELG 250


>gi|218158043|gb|ACK58678.1| NBS-LRR disease resistance protein [Setaria italica]
          Length = 890

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 22/133 (16%)

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSVM 813
           RV EI E  R L+ ++ +   +L    +    + D      NF +  +   D+++ K ++
Sbjct: 123 RVSEILESLRNLEFLY-RGNTELGNFHVDDESLQDHGLVLQNFEAVTVIGFDNEQ-KEIV 180

Query: 814 DALQKKIQSGIIM-LVGISKEKKASVL--IVVTEDLLDRFNA------------VDLARL 858
           + L +K     ++ +VG+    K ++   I  ++ +   F+A            VDL + 
Sbjct: 181 EKLTEKDNKLSVVSIVGMGGAGKTTLARKIYTSDKIKQHFDAIACVTVSQKFEVVDLLKD 240

Query: 859 SAKVLGGGGGGGR 871
             K + GG   GR
Sbjct: 241 IMKQITGGRDDGR 253


>gi|198430849|ref|XP_002120173.1| PREDICTED: similar to cGMP-dependent protein kinase 1, alpha
           isozyme (CGK 1 alpha) (cGKI-alpha) [Ciona intestinalis]
          Length = 1896

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 37/82 (45%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           +GQ++   L  + +  K     + +   NV  ++E   EE  ++Q +  K + +L   + 
Sbjct: 51  SGQKSIQKLEQELKVQKETKQQVLLELENVRMKLETAKEERERMQKVIQKLRKELQSANN 110

Query: 787 SCHKIADVNFMSHIISEVDSKE 808
              K ++       I++V+ KE
Sbjct: 111 QLEKKSNYLQSIQKITDVEGKE 132


>gi|169849069|ref|XP_001831238.1| hypothetical protein CC1G_00785 [Coprinopsis cinerea okayama7#130]
 gi|116507506|gb|EAU90401.1| hypothetical protein CC1G_00785 [Coprinopsis cinerea okayama7#130]
          Length = 224

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY---RKLQ 771
            I   +RR+  IT    +  L+ Q+E+L++    LK  +  ++ R + +  +    ++ +
Sbjct: 69  FIMNHMRRVY-ITPSEGQQELVQQNEQLRAQVDNLKSQEEELLARNDRLKRQRDSCKRKE 127

Query: 772 LIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEV 804
             +A+ + QL  E      ++ D   +    S  
Sbjct: 128 RENAQERQQLERELAQVRRELEDARLVYTQASNA 161


>gi|28376438|gb|AAM97273.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 455

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G R        +E  + L S L + +   +     V++  E  ++L+     +K QL  +
Sbjct: 57  GLRTLLEQKKAEEIERELKSALGLEKLEKLAELELVKQRLESMKELERELEAKKSQLEKD 116

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSV 812
            L     A V        E D  +L+ +
Sbjct: 117 GLRVELEALVRL------EADVAQLREL 138


>gi|28376418|gb|AAM97263.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 455

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G R        +E  + L S L + +   +     V++  E  ++L+     +K QL  +
Sbjct: 57  GLRTLLEQKKAEEIERELKSALGLEKLEKLAELELVKQRLESMKELERELEAKKSQLEKD 116

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSV 812
            L     A V        E D  +L+ +
Sbjct: 117 GLRVELEALVRL------EADVAQLREL 138


>gi|312623390|ref|YP_004025003.1| hypothetical protein Calkro_2363 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203857|gb|ADQ47184.1| hypothetical protein Calkro_2363 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 444

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 11/130 (8%)

Query: 724 EAITGQRARSHLMGQDEKLKS-LASFLKVSQGNV--VGRVEEIWEEYRK---LQLIHAKR 777
           E  T     + L    + L+  L    K  Q  +  + +V++  +  +    L+    + 
Sbjct: 116 EFKTFLTIYNILKSDLDFLEKVLKDSEKTLQEELEYIEKVKKAVDGIKNNEVLKKKIDEL 175

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             +   +D     +  +  +   I        KS+ D  + +  + +I L+    E+K  
Sbjct: 176 FAKRVSDDDLKKAVEGIKRIDEKIEYF-----KSLGDDKKNEYINTMIQLLTKRFEEKYP 230

Query: 838 VLIVVTEDLL 847
           +++  +  L 
Sbjct: 231 LILSKSSSLA 240


>gi|300814934|ref|ZP_07095164.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300510954|gb|EFK38224.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 658

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIAD 793
               +  K + +    +   ++  + ++ +E ++LQ  +AK K        +L   K   
Sbjct: 336 NKIAQLNKEIENLKNSNNDELIAEITQLKDELKRLQNENAKLKEDYSSTKWELEAEKEK- 394

Query: 794 VNFMSHIISEVDSKELKSVMDALQK 818
                   ++ +  ++K + + L+ 
Sbjct: 395 --------TDKNENKIKEMQEKLKS 411



 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q + L       +     +  ++E   +   KL+   A  + ++  +D   +KI
Sbjct: 282 IKDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGEKLKQEKANLEEEIRDKD---NKI 338

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 339 AQLNKEIENLKNSNNDELIAEITQLKDELK 368


>gi|288818203|ref|YP_003432551.1| phage tail tape measure protein [Hydrogenobacter thermophilus TK-6]
 gi|288787603|dbj|BAI69350.1| phage tail tape measure protein [Hydrogenobacter thermophilus TK-6]
 gi|308751804|gb|ADO45287.1| hypothetical protein Hydth_0891 [Hydrogenobacter thermophilus TK-6]
          Length = 883

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 60/158 (37%), Gaps = 12/158 (7%)

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
            ++++E    GV ++       +   G +  +           + R+ ++  + A+ +  
Sbjct: 416 WLITIETHIVGVINTIRVWIGKIPLLGRLFGISEEELQESLKNMERMRSMAEEDAKKYKE 475

Query: 737 GQDEKLKSLASF-----------LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            Q +  + +               K     ++  +++  +   KLQ I    K  ++++D
Sbjct: 476 TQQKAAEEITQAGQITAQAIRQVSKQQAEEILKSLKDQEQTIAKLQEIKQNLKDSISLQD 535

Query: 786 LSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS 822
           +      +    S  +   +D+ +++  +D L+ K++ 
Sbjct: 536 IMNALQDETKAFSQKLELSLDTSDVEDRIDTLKGKLRE 573


>gi|57032683|gb|AAH88974.1| Cep63 protein [Xenopus laevis]
          Length = 523

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--RKLQL 781
           EA   + + + L    ++   L+  L+  + +V   +  + +  ++LQ    +   KL+L
Sbjct: 318 EAAEHRMSLNALENLRQENCRLSELLQTQEPDVAQALVNLEQANQRLQRELLQTQEKLEL 377

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +         V+ +S  +     +EL+ + + L+
Sbjct: 378 IAQRRESEIQNAVDSISQELLNKQEQELRIMQERLK 413


>gi|237736778|ref|ZP_04567259.1| acriflavin resistance protein B [Fusobacterium mortiferum ATCC
           9817]
 gi|229420640|gb|EEO35687.1| acriflavin resistance protein B [Fusobacterium mortiferum ATCC
           9817]
          Length = 1012

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 69/180 (38%), Gaps = 33/180 (18%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRAR-------------SHLMGQDEKLKSLASFL 749
           G+++ +    ES+++  + RIE ++                    L   +  +  + + +
Sbjct: 147 GDLVEMRSYVESTLKPMLERIEGVSEIEVFGGREQEVAVVVDPDKLENYNLGIMDVYNKM 206

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
             +  N+ G +       R+ +  +      L   +    +  ++  +  +  +    +L
Sbjct: 207 ASASVNIPGGI------LREGEKEY------LIKVEAEIERADEIKEIVLLNRDGHILKL 254

Query: 810 KSVMD-ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           K + D  +  K +S +       K  K +++++V++   D  NAV + +   KV+    G
Sbjct: 255 KDIADIKISPKDRSSV-----SRKNGKENIVVIVSK--TDEGNAVGIVKNVKKVMEQAKG 307


>gi|196001199|ref|XP_002110467.1| hypothetical protein TRIADDRAFT_54506 [Trichoplax adhaerens]
 gi|190586418|gb|EDV26471.1| hypothetical protein TRIADDRAFT_54506 [Trichoplax adhaerens]
          Length = 1088

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS---- 787
              +   +++L+   + L V+Q  V      + E+ + L+    + K  L++ +      
Sbjct: 776 LERVKCLEKELQETKAMLNVAQDKVTKNTTNV-EQIKSLEKELQETKTTLDITESKLTAT 834

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +KIA+    S+ +  ++ K L+  +D  + + ++ 
Sbjct: 835 TNKIAEFEKSSNQVLALEKKLLEDQIDRWKNRAETA 870


>gi|156098927|ref|XP_001615478.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148804352|gb|EDL45751.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1068

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 12/127 (9%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCH 789
           L  + E+LK L   L     N+    + +  E +K  L+ AK   +     + ++     
Sbjct: 859 LKSKQEQLKKLQDELN-KPANLESSSQYVLSEIKKNTLVIAKYIDKCYYRAVILQINKAK 917

Query: 790 KIADVNFM-SHIISEVDSKELKSVMDALQKKIQSGI---IMLVGIS--KEKKASVLIVVT 843
           K A V ++      E++ ++++ + D L  K        + L G+    E K+ ++I V 
Sbjct: 918 KKALVKYIDFGNEDELNFEDIRKLSDGLSLKSYPPFSIRVSLAGVKIPAENKSDLIIYVK 977

Query: 844 EDLLDRF 850
           + LLD+F
Sbjct: 978 KFLLDKF 984


>gi|284052870|ref|ZP_06383080.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 508

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  I+ + 
Sbjct: 32  HTTSHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFTEQDLKAIKKEMVKILKRK 90

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVR---VVSVEYEDGGVHSSALCGGTHVSSTG 703
           LPV+   ++RE+A        LG  Y   +       +     G     LC G HV +TG
Sbjct: 91  LPVIREEVSREEAQRR--IETLGEPYKLEILADLTEPITIYHLGDQWWDLCAGPHVETTG 148

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           +I     +   S+     R     G   ++ L                +   +      +
Sbjct: 149 DINP-KAIELESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLAEYKRRK 195

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++R+L    
Sbjct: 196 EEALRRDHRRLGKEL 210


>gi|28376420|gb|AAM97264.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 458

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 737 GQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             DE    L S L + +   +     V++  E  ++L+    + +L          K+ +
Sbjct: 70  NADEIEGELKSALGLERLEKLAELELVKQRLESMKELEKKIEEAQLTAEELREMREKLKE 129

Query: 794 VNFMSHIISEVDSKELKSV-----MDALQKKIQSGIIMLVGISKEKKASVLIVVT---ED 845
           +          D   LK        D L+K ++     ++   + KK+ ++  V    + 
Sbjct: 130 LAGR-----GEDPAGLKKAIEEANADELKKGLKE----VLKTLEGKKSELVREVGRLKKG 180

Query: 846 LLDRFNAVD-LARLSAKVLG 864
            L+   A   L       LG
Sbjct: 181 ALEEMKAGKGLVEEVKGELG 200


>gi|261334372|emb|CBH17366.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 240

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 56/146 (38%), Gaps = 16/146 (10%)

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ--RARSHLMGQDEKLKS 744
           G   + +    H S TGE   L       + +  RR+     +   A   +   ++ LK 
Sbjct: 92  GPLPAEVREIIHNSCTGEDAELAERQARRLLSTSRRVHVYRAELQSAIEEVKDVEQLLKR 151

Query: 745 ---LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
              + + L+    ++ GR+E++ +E R  ++   +++ +         +           
Sbjct: 152 HQVIQTALRTELNDLNGRIEQLLKERRLCEIQLQQQEDEEQRRAAKLQEAN--------- 202

Query: 802 SEVDSKELKSVMDALQKKIQSGIIML 827
             +    L+S +D +  +  +G ++L
Sbjct: 203 --MRVDILRSTIDKITNETLAGHVLL 226


>gi|160947702|ref|ZP_02094869.1| hypothetical protein PEPMIC_01637 [Parvimonas micra ATCC 33270]
 gi|158446836|gb|EDP23831.1| hypothetical protein PEPMIC_01637 [Parvimonas micra ATCC 33270]
          Length = 753

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           T ++A   +  +   L  + +  KV +      ++++ EE RK +      K    VED+
Sbjct: 217 TAKKAIDSVAKEQ--LDKIVADKKVKEEERQMTIKKVDEEVRKAKADIDNAKTNKEVEDI 274

Query: 787 S---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                 KI +++       E   KEL    +  + KI S   +     +EKK +V
Sbjct: 275 KNKVIAKIKNISIKQKSAKEDAKKELTDYAEKAKTKINSDSTL---TDEEKKTAV 326


>gi|157130540|ref|XP_001655740.1| hypothetical protein AaeL_AAEL011791 [Aedes aegypti]
 gi|108871875|gb|EAT36100.1| conserved hypothetical protein [Aedes aegypti]
          Length = 558

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-HKI 791
             +  + EK++ + + L   Q +   +V ++  + ++ Q   A+ K +    ++   +++
Sbjct: 295 QRVNEEMEKIEDINNRLNNLQVDTDKKVSDLENQLKEAQKEAAEFKTKNEQLEIDMRNQV 354

Query: 792 ADVNFMSHIISEVDSKEL 809
           A ++ M   ISE D +++
Sbjct: 355 AKISVMESTISEKDKEQI 372


>gi|327267544|ref|XP_003218560.1| PREDICTED: STE20-like serine/threonine-protein kinase-like [Anolis
            carolinensis]
          Length = 1261

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              A+     Q+++L    + LK  +  V   VE+     ++L+    KRK +   +    
Sbjct: 930  DEAKRIKGEQEKELSKFQNMLKNKRKEVFNEVEKAP---KELRKELMKRKKEELTQSQHA 986

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             +     F+     E+D+  LK ++   + ++
Sbjct: 987  QEQE---FVQKQQQELDA-SLKKIIHQQKAEL 1014


>gi|118498368|ref|NP_004977.2| kinectin isoform c [Homo sapiens]
 gi|409466|gb|AAB65853.1| kinectin [Homo sapiens]
 gi|119601089|gb|EAW80683.1| kinectin 1 (kinesin receptor), isoform CRA_c [Homo sapiens]
 gi|119601091|gb|EAW80685.1| kinectin 1 (kinesin receptor), isoform CRA_d [Homo sapiens]
 gi|261858162|dbj|BAI45603.1| kinectin 1 [synthetic construct]
          Length = 1300

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  ++ +LK L + LK  + ++  +   ++++ +E +  +    + K Q   +  S    
Sbjct: 935  LKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPH 994

Query: 792  AD-VNFMSHIISEVDS-----KELKSVMDALQKKIQS 822
             + +  +S    E+         LK  ++  +KK   
Sbjct: 995  EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNE 1031


>gi|319789049|ref|YP_004150682.1| outer membrane efflux protein [Thermovibrio ammonificans HB-1]
 gi|317113551|gb|ADU96041.1| outer membrane efflux protein [Thermovibrio ammonificans HB-1]
          Length = 425

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
              G++    L    E L+ L   LK ++ ++   + +   E +KLQ      + +L + 
Sbjct: 308 FTAGRKGLELLQNGREVLQKLYR-LKAAERDLKREIADAVSELKKLQSQIEADRKKLTL- 365

Query: 785 DLSCHKIADVNFMSHIISEVDSKEL 809
                ++  +  + +   + D   L
Sbjct: 366 ---AKEVERIEQLKYKSGKGDMDHL 387


>gi|282882779|ref|ZP_06291386.1| putative copper amine oxidase domain protein [Peptoniphilus
           lacrimalis 315-B]
 gi|281297440|gb|EFA89929.1| putative copper amine oxidase domain protein [Peptoniphilus
           lacrimalis 315-B]
          Length = 283

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
              + +    K ++ ++    +++ EE ++ +    K + +   +DL          +  
Sbjct: 37  ATEQEIKKDTKEAKEDIKEAKKDLKEEAKEAKKDL-KEEAKEAKKDLKEETKEVKKDLKE 95

Query: 800 IISEVDSKELKSVMDALQKKIQSGI 824
              E   K+LK      +K  +  +
Sbjct: 96  EAKEA-KKDLKEEAKEAKKDAKETV 119


>gi|281212081|gb|EFA86242.1| hypothetical protein PPL_00804 [Polysphondylium pallidum PN500]
          Length = 747

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 5/117 (4%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           ++   EI +   + E + +     + A +    R     Q   ++     L V    +  
Sbjct: 401 INREWEIKVAEAIEEQTSKYASLEMTAKSFDFERETFRNQIAVIQQQTEDLNVKNHELSD 460

Query: 759 RVEEIWEEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           R+ ++  E R  +         + +L+ N+        +    +S +  E+ SKE+K
Sbjct: 461 RILDLSNELRNKEQQIITLTAEQEELKKNLRRSQAELKSKDGKLSLLQDEISSKEIK 517


>gi|157363277|ref|YP_001470044.1| SMC domain-containing protein [Thermotoga lettingae TMO]
 gi|157313881|gb|ABV32980.1| SMC domain protein [Thermotoga lettingae TMO]
          Length = 854

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKI 791
           + +  +      ++  LK     +  R+ E+ E  +K      K   +L + ++    K+
Sbjct: 533 NAMNNKITVQSEISQ-LKERSDQINKRISELKERLKKNSEQQEKTAKELRSNKEKFFEKL 591

Query: 792 ADVNFMSHIISEVDSKELKS-VMDALQKKIQSGII 825
            ++NF          K+L +     + +KI+S I+
Sbjct: 592 GEINFTLEQFESYFKKQLPTHSAVQVLQKIESEIV 626


>gi|40789066|dbj|BAA02794.2| KIAA0004 [Homo sapiens]
          Length = 1307

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  ++ +LK L + LK  + ++  +   ++++ +E +  +    + K Q   +  S    
Sbjct: 942  LKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPH 1001

Query: 792  AD-VNFMSHIISEVDS-----KELKSVMDALQKKIQS 822
             + +  +S    E+         LK  ++  +KK   
Sbjct: 1002 EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNE 1038


>gi|293556705|ref|ZP_06675269.1| threonyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291601167|gb|EFF31455.1| threonyl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 646

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 9/167 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA HL+  A+  +  +     G  I              +T+ +L +IE  +  I+ +N
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKEN 132

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LP+  R++++++A+   A+     +    +    V           LC G HV STG I 
Sbjct: 133 LPIERRVLSKQEALEIFASDPYKVELISELPEEEVITAYQQGEFIDLCRGPHVPSTGRIQ 192

Query: 707 LLYI-------VSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKS 744
           +  +          +S    ++R+   A   ++A    +   E+ K 
Sbjct: 193 VFKLLSVAGAYWRGNSNNQMMQRVYGTAFFDKKALKEYIRLREEAKE 239


>gi|168211668|ref|ZP_02637293.1| hypothetical protein AC1_2372 [Clostridium perfringens B str. ATCC
           3626]
 gi|170710371|gb|EDT22553.1| hypothetical protein AC1_2372 [Clostridium perfringens B str. ATCC
           3626]
          Length = 451

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 10/108 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            ++L  + E+LKS  + LK ++      VE + +E ++++  +A+    + +       +
Sbjct: 170 IANLKKEIERLKSENNSLKSAKDKNSHEVERLSKELKEVKSNNAELNKTIEISRNKEKNL 229

Query: 792 -ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             ++N +    + V+ KEL+     L++K  S    L  I  E K ++
Sbjct: 230 NNEINNLKSKNNNVE-KELR----DLKEKNNS----LSSIVNEAKKNL 268


>gi|167522547|ref|XP_001745611.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775960|gb|EDQ89582.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1070

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 16/129 (12%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC----HKIA 792
             + ++  L    K +  +V      + +E  +L+    + K +    + +       +A
Sbjct: 574 ALETQIADLTKRSKAASKDVAQ-CAALEKEIAQLEAAFEEAKQRAAEYEQAVRDGEEALA 632

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
           +V  +          +L+  +  L+++I  G +       + KA      T  L  R  A
Sbjct: 633 NVGGVVLKAKRSKVDDLRQAIVDLKQQITRGAV-------DGKA--CSRKTTQLSKRVEA 683

Query: 853 VDLARLSAK 861
               +  A+
Sbjct: 684 SQ--KELAE 690


>gi|141796282|gb|AAI39654.1| LOC407656 protein [Danio rerio]
          Length = 580

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           A   L     ++ +L   L+  +     +V+ + E+    ++      LQ    DL   +
Sbjct: 293 AGEALQKALAEISTLTHTLEKQRLEHQQQVKALEEQVNSSEVKKQLTALQRQT-DLLEEE 351

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             +     H  +E ++K+L+  ++ L+KK+Q
Sbjct: 352 RKEWQ-HKHTKAETEAKDLRFTVEELKKKLQ 381


>gi|189036|gb|AAA36349.1| nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
          Length = 1247

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 701 STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
              E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 356 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNK 415

Query: 756 VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
              +  ++ EE   L+             ++L   +  +VN +   + E ++K  ++ + 
Sbjct: 416 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQ 474

Query: 815 ALQKKIQSGI 824
            +++K    +
Sbjct: 475 EMRQKHSQAV 484


>gi|324500174|gb|ADY40091.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1968

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 49/129 (37%), Gaps = 21/129 (16%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           E+  + +  + +   G R             L   + +++ +    K     ++ R++ +
Sbjct: 498 EMRRMKLNFDQTTADGER-----------KALEDAEAQMRLIEEEYKNRITELMRRIDTL 546

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSV------M 813
            ++ + L+   +  K +    ++      HKI + +     + +V +  LK +       
Sbjct: 547 QDDNKHLKGDLSTVKDKYRDLEVEYNSTLHKINEKDQALKRLEDVRNDLLKDLENQRARF 606

Query: 814 DALQKKIQS 822
           DA+  ++ S
Sbjct: 607 DAVTNELDS 615


>gi|254167555|ref|ZP_04874406.1| V-type ATPase 116kDa subunit family [Aciduliprofundum boonei T469]
 gi|289596941|ref|YP_003483637.1| V-type ATPase 116 kDa subunit [Aciduliprofundum boonei T469]
 gi|197623364|gb|EDY35928.1| V-type ATPase 116kDa subunit family [Aciduliprofundum boonei T469]
 gi|289534728|gb|ADD09075.1| V-type ATPase 116 kDa subunit [Aciduliprofundum boonei T469]
          Length = 712

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             ++E +K     L     ++  R+ +++ ++ ++     + K+Q    +       DV+
Sbjct: 95  REREEIMKDAERTL----ESLEPRILDLYSKWEEINTEIERIKIQRRQVEKLKALPFDVS 150

Query: 796 FM----SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK--ASVLIVVTEDLLDR 849
           ++       I+   +K L    D L+K    G I L  +++ KK   + +IVV   + D+
Sbjct: 151 YLGEGPYAYIAAGTAKNL----DHLKKLESEGKIALWSVTEGKKKEVNYIIVVASHMKDK 206


>gi|170046590|ref|XP_001850842.1| myosin-Va [Culex quinquefasciatus]
 gi|167869329|gb|EDS32712.1| myosin-Va [Culex quinquefasciatus]
          Length = 1822

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
            L  + + L   ++ LK     +    +++ +E R++Q      KLQL  +D  
Sbjct: 966  LQQRYDTLSKESAVLKKQNAEIPEMRQKL-DETRRMQNELKALKLQLEQKDEK 1017


>gi|158253455|gb|AAI53907.1| LOC553442 protein [Danio rerio]
          Length = 411

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE-EYRKLQLIHAKRKLQLNVEDLSC 788
                   +D+K+ +L   ++  Q  V+ ++E++ +   ++ +  ++++K     +    
Sbjct: 224 AVLKRYQTRDKKITALEDTIR-QQEKVIEKMEKLLDANLKERRKGNSEKKKAAMKQKDEE 282

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            K  ++  +       ++  L+  +D L+  +   II+
Sbjct: 283 EKRREIESVFV----AENSRLREELDRLRN-LPPPIII 315


>gi|134046456|ref|YP_001097941.1| phosphoesterase domain-containing protein [Methanococcus
           maripaludis C5]
 gi|132664081|gb|ABO35727.1| phosphoesterase, RecJ domain protein [Methanococcus maripaludis C5]
          Length = 338

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 820 IQSGIIMLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           I + I  +V + K +++  + +   + +  + +   L    AK+LGG GGG     A++ 
Sbjct: 246 IGADIAFVVAVRKRDREIRISVRSRKSISKKVHMGALLENVAKILGGQGGG----HAEAA 301

Query: 879 GPNG---------NKADQAIAGVASFLKK 898
           G N             D  ++     L++
Sbjct: 302 GLNAPWDKEKTKEEAIDSVLSVCIKSLEE 330


>gi|14590471|ref|NP_142539.1| alanyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|74570801|sp|O58307|ALAXS_PYRHO RecName: Full=Alanyl-tRNA editing protein AlaX-S; Short=AlaX-S;
           AltName: Full=Alanyl-tRNA deacylase AlaX-S; AltName:
           Full=PhoAlaX
 gi|56966314|pdb|1V4P|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase From
           Pyrococcus Horikoshii Ot3
 gi|56966315|pdb|1V4P|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase From
           Pyrococcus Horikoshii Ot3
 gi|56966316|pdb|1V4P|C Chain C, Crystal Structure Of Alanyl-Trna Synthetase From
           Pyrococcus Horikoshii Ot3
 gi|73535490|pdb|1WXO|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
           Complex With Zinc
 gi|73535491|pdb|1WXO|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
           Complex With Zinc
 gi|73535492|pdb|1WXO|C Chain C, Structure Of Archaeal Trans-Editing Protein Alax In
           Complex With Zinc
 gi|3256980|dbj|BAA29663.1| 157aa long hypothetical alanyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 157

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 3/143 (2%)

Query: 585 INHSATHLLHHALSTILGSHV-SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             HSA H++  A+  +LGS       + +  +     V   +  +  E++ IE   N+ +
Sbjct: 7   RTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKV 66

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N P+    + RE+A       +          V  ++       +   C   H  +TG
Sbjct: 67  KENAPIKIYELPREEAEKMFGEDMYDLFPVPE-DVRILKVVVIEDWNVNACNKEHTKTTG 125

Query: 704 EIMLLYIVSES-SIRAGIRRIEA 725
           EI  + I         G+  I  
Sbjct: 126 EIGPIKIRKVRFRKSKGLLEIHF 148


>gi|311245483|ref|XP_001925661.2| PREDICTED: ninein isoform 1 [Sus scrofa]
          Length = 2136

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
              E+ L     +   R    R+ A+  Q+       ++E+LK++   L+++   +  +VE
Sbjct: 1454 IAELELEKKKLQELTRKLRERVTALVKQKDVLAQGEKEEELKAMMHDLQITCSEMQQKVE 1513

Query: 762  EIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSKELKS 811
             +  E  KLQ  ++  + ++      + +S  ++  +N     +   I  V  +   ++ 
Sbjct: 1514 LLRYESEKLQEENSILRNEITTLNEEDSISNLQLGKLNGSQEEIRQKIETVKQEKAAVQK 1573

Query: 812  VMDALQKKIQS 822
            ++++L+K+I  
Sbjct: 1574 IVESLKKQISE 1584


>gi|66395829|ref|YP_240156.1| ORF022 [Staphylococcus phage EW]
 gi|62636251|gb|AAX91362.1| ORF022 [Staphylococcus phage EW]
          Length = 198

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +A   L  +D+++  L          +  ++++  +E  + Q    + KL   ++    
Sbjct: 45  DKANKELDNRDKQITDLQKAKDGDNQELKEKLDQYKQENAQYQADMKELKLNNAIKLAVA 104

Query: 789 HKIADVNFMSHIISEVDSK-----ELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
               D N +  ++ + + +      +K + DA++   +S   +      + KAS
Sbjct: 105 KDANDANDVLLMLDKSNLELQEDGNVKGLEDAVKALQESKPYLFA----DNKAS 154


>gi|7715573|gb|AAF68098.1|AF255545_1 PspA [Streptococcus pneumoniae]
          Length = 235

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK  +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 38  IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 91

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + EL++ +  L+K+I +  I+L G   E 
Sbjct: 92  KADELQNKVADLEKEISNLEILLGGADSED 121


>gi|15669512|ref|NP_248322.1| purine NTPase [Methanocaldococcus jannaschii DSM 2661]
 gi|18202578|sp|Q58718|RAD50_METJA RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|1591962|gb|AAB99331.1| purine NTPase [Methanocaldococcus jannaschii DSM 2661]
          Length = 1005

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 10/119 (8%)

Query: 729 QRARSH--LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI------HAKRKLQ 780
           ++A  +  L  +   L      ++ +  ++  R+ ++ EE + + +           + +
Sbjct: 402 EKAVEYNKLTLEYITLLQEKKSIEKNINDLETRINKLLEETKNIDIESIENSLKEIEEKK 461

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
             +E+L   KI     +  I    + K LK ++D L++      +    I + KK  ++
Sbjct: 462 KVLENLQKEKIELNKKLGEI--NSEIKRLKKILDELKEVEGKCPLCKTPIDENKKMELI 518


>gi|69245748|ref|ZP_00603614.1| Threonyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257880251|ref|ZP_05659904.1| threonyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257883051|ref|ZP_05662704.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257891365|ref|ZP_05671018.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257893638|ref|ZP_05673291.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|258614441|ref|ZP_05712211.1| threonyl-tRNA synthetase [Enterococcus faecium DO]
 gi|260560451|ref|ZP_05832625.1| threonyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293563269|ref|ZP_06677719.1| threonyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|294621403|ref|ZP_06700575.1| threonyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|314939207|ref|ZP_07846461.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314942550|ref|ZP_07849386.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314948402|ref|ZP_07851791.1| threonyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314951256|ref|ZP_07854311.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314991679|ref|ZP_07857149.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314996805|ref|ZP_07861818.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|68195641|gb|EAN10081.1| Threonyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257814479|gb|EEV43237.1| threonyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257818709|gb|EEV46037.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257827725|gb|EEV54351.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257830017|gb|EEV56624.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|260073453|gb|EEW61781.1| threonyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291599050|gb|EFF30095.1| threonyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|291604721|gb|EFF34205.1| threonyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313589100|gb|EFR67945.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313593770|gb|EFR72615.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313596608|gb|EFR75453.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313598686|gb|EFR77531.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313641458|gb|EFS06038.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313645194|gb|EFS09774.1| threonyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 646

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 9/167 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA HL+  A+  +  +     G  I              +T+ +L +IE  +  I+ +N
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKEN 132

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LP+  R++++++A+   A+     +    +    V           LC G HV STG I 
Sbjct: 133 LPIERRVLSKQEALEIFASDPYKVELISELPEEEVITAYQQGEFIDLCRGPHVPSTGRIQ 192

Query: 707 LLYI-------VSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKS 744
           +  +          +S    ++R+   A   ++A    +   E+ K 
Sbjct: 193 VFKLLSVAGAYWRGNSNNQMMQRVYGTAFFDKKALKEYIRLREEAKE 239


>gi|311245485|ref|XP_003121856.1| PREDICTED: ninein isoform 2 [Sus scrofa]
          Length = 2049

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
              E+ L     +   R    R+ A+  Q+       ++E+LK++   L+++   +  +VE
Sbjct: 1454 IAELELEKKKLQELTRKLRERVTALVKQKDVLAQGEKEEELKAMMHDLQITCSEMQQKVE 1513

Query: 762  EIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSKELKS 811
             +  E  KLQ  ++  + ++      + +S  ++  +N     +   I  V  +   ++ 
Sbjct: 1514 LLRYESEKLQEENSILRNEITTLNEEDSISNLQLGKLNGSQEEIRQKIETVKQEKAAVQK 1573

Query: 812  VMDALQKKIQS 822
            ++++L+K+I  
Sbjct: 1574 IVESLKKQISE 1584


>gi|229824531|ref|ZP_04450600.1| hypothetical protein GCWU000282_01875 [Catonella morbi ATCC 51271]
 gi|229785902|gb|EEP22016.1| hypothetical protein GCWU000282_01875 [Catonella morbi ATCC 51271]
          Length = 490

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 730 RARSHLMGQDEKLKSL---ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           +  + L     KL+ +   A+ L+ +       +  +  E + L++   KR+  L  +  
Sbjct: 50  QLYAQLASSYAKLQEVQAQATTLQGNIQENDAAIASLQAEIKDLEVAIGKRESLLADQAR 109

Query: 787 SCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
           +        N+++ + S     +    +D ++K + +   +L     +K+A   +   + 
Sbjct: 110 AVQATGGAENYVNVVASSKSVSDFVGRVDVVKKMVSANKTLLGQQKADKEA---VETKKS 166

Query: 846 LLDRFNAVDLARLS 859
            ++   A ++A+  
Sbjct: 167 AVETTKADNVAKHV 180


>gi|227484735|ref|ZP_03915051.1| possible surface protein [Anaerococcus lactolyticus ATCC 51172]
 gi|227237293|gb|EEI87308.1| possible surface protein [Anaerococcus lactolyticus ATCC 51172]
          Length = 194

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIAD 793
               +  K + +    +   ++  + ++ +E ++LQ  +AK K      + +L   K   
Sbjct: 103 KKIAQLDKEIENLKNSNNDELIAEITQLKDELKRLQDENAKLKEDYSSTIWELEAEKEKA 162

Query: 794 VN 795
           V 
Sbjct: 163 VK 164



 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            + L  Q + L       +     +  ++E   +   KL+   AK + ++  +D    KI
Sbjct: 49  INDLEDQIKDLNEKKQEDQSKIDELKEKLESCKDNGEKLKQEKAKLEEEIRDKD---KKI 105

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A ++     +   ++ EL + +  L+ +++
Sbjct: 106 AQLDKEIENLKNSNNDELIAEITQLKDELK 135


>gi|145504665|ref|XP_001438299.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405471|emb|CAK70902.1| unnamed protein product [Paramecium tetraurelia]
          Length = 986

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 732 RSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE-------YRKL--------QLIHA 775
              L  + + L  L   +       ++  +E + ++        +KL        +    
Sbjct: 170 LEELRKKAKILDDLQKKIGAKGPDELLKELENLKKKAQQFDDINKKLNGKNFSDLEKELE 229

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKE 833
           K + + +  D    + ++ + +   + ++  K  EL  +   L  +      +L  + + 
Sbjct: 230 KLRQKADKFDEISKQFSNPSDIQKELDQLKKKAAELDKLKTQLNNQNPDQ--LLKSLDEN 287

Query: 834 KK 835
           KK
Sbjct: 288 KK 289


>gi|145479739|ref|XP_001425892.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392964|emb|CAK58494.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1014

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q+ +  +   ++K       LK    +    ++++ ++ ++ +      + ++N  +  C
Sbjct: 574 QKLQDQINNTEQKQNKTQDQLKNQLQDAQNEIKQLKDQIKEQEKEKKNLQNEVNNLNKEC 633

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDAL 816
             + D      I  + ++ E+  + D L
Sbjct: 634 DDL-DAKLQQKIKEQQENSEINRLNDEL 660



 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 6/87 (6%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
                Q          L     ++  +V++   + + L+        +        + I 
Sbjct: 392 DEQAKQINAANEELDQLDQKIADLEQKVKDQQNQIKDLEKEIKDLNKEKQ------NLIQ 445

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKK 819
           D N +    ++ + K L+   D ++ +
Sbjct: 446 DNNNLHQKFNQAEEKALQQQKDLVKAQ 472


>gi|92096308|gb|AAI15101.1| LOC553442 protein [Danio rerio]
          Length = 407

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE-EYRKLQLIHAKRKLQLNVEDLSC 788
                   +D+K+ +L   ++  Q  V+ ++E++ +   ++ +  ++++K     +    
Sbjct: 224 AVLKRYQTRDKKITALEDTVR-QQEKVIEKMEKLLDANLKERRKGNSEKKKAAMKQKDEE 282

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            K  ++  +       ++  L+  +D L+  +   II+
Sbjct: 283 EKRREIESVFV----AENSRLREELDRLRN-LPPPIII 315


>gi|51893984|ref|YP_076675.1| hypothetical protein STH2846 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857673|dbj|BAD41831.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 245

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 39/117 (33%), Gaps = 7/117 (5%)

Query: 732 RSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDL 786
                   + +  +A  LK   V +  +   + ++  EY   Q    +       N   +
Sbjct: 69  IEAYNALSDSINKVAEALKAKGVKEEELQTSMFQLAAEYNWTQERGQELVGYRATNTLSI 128

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQK--KIQSGIIMLVGISKEKKASVLIV 841
           +   +  V  +     +  + +L+ V   ++   K+    + L     + KA ++  
Sbjct: 129 TTQDLDKVAELIQAAVQAGANDLRGVTFQVKNADKLLDDALKLAVADAKAKAELVAG 185


>gi|301771179|ref|XP_002921005.1| PREDICTED: centromere protein F-like [Ailuropoda melanoleuca]
 gi|281342968|gb|EFB18552.1| hypothetical protein PANDA_009838 [Ailuropoda melanoleuca]
          Length = 3110

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 703  GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
             E+ LL    E    +    ++A T  +    L           + LK       G+++ 
Sbjct: 2741 AEVDLLKSSKEELNNS----LKATT--QILEELKKTKADNVKYTNQLKKENERAQGKIKL 2794

Query: 763  IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            + +  ++L+      + +L+  + +  K      +   + E+   E+K + + L++K + 
Sbjct: 2795 LIKSCKQLEEEKEMLQKELSHLEAAQEKQKTGTVVDSNVEEL-MAEIKELKETLEEKNKE 2853

Query: 823  G 823
             
Sbjct: 2854 A 2854


>gi|163731960|ref|ZP_02139407.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Roseobacter litoralis Och 149]
 gi|161395414|gb|EDQ19736.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Roseobacter litoralis Och 149]
          Length = 580

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 14/144 (9%)

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +  R++++  E R+++       L    E        D   +    ++     +  V   
Sbjct: 323 LAERLDKLNTERREIEAAVRATALAQAEERGL-----DRPLVWAAGADWHPGVVGIVASR 377

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHM 874
           L++      I++       K S     +   +   +    + RL+A+ L   GGG +  M
Sbjct: 378 LKEAAGRPSIVIGISDGIGKGS---GRS---VSGIDLGQPIQRLAAEGLLLKGGGHK--M 429

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           A       +K + A+A ++  L+K
Sbjct: 430 AAGLTVEESKIETAMARLSELLEK 453


>gi|145539181|ref|XP_001455285.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423084|emb|CAK87888.1| unnamed protein product [Paramecium tetraurelia]
          Length = 3066

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 28/61 (45%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
               L  Q ++L+     L+ S   +  +++++ E+ ++L+    +++   +  +L    I
Sbjct: 1955 LKLLEPQLQELQQTEKQLQESVTQLEEKLKQLDEKQKQLENQINQKQQITSALELQLSTI 2014

Query: 792  A 792
             
Sbjct: 2015 N 2015


>gi|220927971|ref|YP_002504880.1| 3D domain protein [Clostridium cellulolyticum H10]
 gi|219998299|gb|ACL74900.1| 3D domain protein [Clostridium cellulolyticum H10]
          Length = 263

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 27/75 (36%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
              Q ++L  L + LK     +  ++EE+ ++ ++L+    +          S  K A V
Sbjct: 71  YKSQSDELSKLNNDLKKQNEQIKKQLEELKKQNKQLEATKRELADDNLHLQKSLKKAASV 130

Query: 795 NFMSHIISEVDSKEL 809
                      S  L
Sbjct: 131 GVKPQSYKIYSSNNL 145


>gi|288573188|ref|ZP_06391545.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568929|gb|EFC90486.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 595

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 67/189 (35%), Gaps = 40/189 (21%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIE  TG  A   L   ++ +  +   LK +  ++      +  E    +    K K   
Sbjct: 369 RIE--TG--AMVELRRLEKSVNKMVRRLKRNIDDLKEGALRLGRELELRKKAEEKLKRAN 424

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI-------QSGIIMLVGISKEK 834
               +  + + ++  + +          + +MD L ++I        +  I+L  + K K
Sbjct: 425 EALFVQAN-VDELTGIFNR---------RRIMDLLAREIARCYEDGGTFGIILFDLDKFK 474

Query: 835 KASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGR------PHMAQSGGPNGNKAD 886
           + + ++     + +L R    +L +  + V   G  GG       P M           +
Sbjct: 475 EVNDVMGHLFGDKVLSRI--GELMKDRSGVGFEGRYGGDEFIILLPDM---------DIE 523

Query: 887 QAIAGVASF 895
           +AI    +F
Sbjct: 524 KAIEEARAF 532


>gi|255077105|ref|XP_002502204.1| predicted protein [Micromonas sp. RCC299]
 gi|226517469|gb|ACO63462.1| predicted protein [Micromonas sp. RCC299]
          Length = 426

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/97 (9%), Positives = 28/97 (28%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
              T       ++  +       R E    + A   +       + L +  +  +  +  
Sbjct: 159 HMETECADYQRMMETARQGEEFARNELRATKDALEDVSKNYAAAEELLNEAQEREDKLGE 218

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
           +++   E+ ++L       + +    D    +  D  
Sbjct: 219 KLKNEREQRKQLAAELRILRAEKEQNDEEFKRFKDRK 255


>gi|154418418|ref|XP_001582227.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121916461|gb|EAY21241.1| hypothetical protein TVAG_166160 [Trichomonas vaginalis G3]
          Length = 533

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 4/97 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A         +L  +   LK        +V  +  + ++L+ +  + K  L  ++   
Sbjct: 190 MEALREAKSGKAELAEI-EKLKAQIDKEYQKVLALHRQRKQLKNVILQLKQALEGKEAQI 248

Query: 789 HK-IADVNFMSHIISEVDS--KELKSVMDALQKKIQS 822
              + +         E D   +EL   +D L+  I  
Sbjct: 249 QDLLNEQRGYQEKALESDGRIRELNKKIDDLKGAISK 285


>gi|326802739|ref|YP_004320557.1| copper amine oxidase N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651057|gb|AEA01240.1| copper amine oxidase N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 514

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/84 (9%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--------LNVEDLS 787
               +  K +      +   ++  + ++ +E ++LQ  +AK K             ++ +
Sbjct: 90  NKIAQLNKEIEDIKNSNNDELIAEITQLKDELKRLQDENAKLKEDYSSTKWELEAEKEKT 149

Query: 788 CHKIADVNFMSHIISEVDSKELKS 811
                 +  +   +  ++ +  K 
Sbjct: 150 DKNENKIKEIQEKLESLEGELAKK 173



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            S L  Q + L       +     +  ++E   +   KL+   +K + ++  +D   +KI
Sbjct: 36  ISDLENQIKDLNDKKQEDQSKIDELKEKLETCKDNGEKLKQEKSKLEEEIRDKD---NKI 92

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     I   ++ EL + +  L+ +++
Sbjct: 93  AQLNKEIEDIKNSNNDELIAEITQLKDELK 122


>gi|261208968|ref|ZP_05923373.1| threonyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289565220|ref|ZP_06445672.1| threonyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294615018|ref|ZP_06694907.1| threonyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|260077007|gb|EEW64729.1| threonyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289163041|gb|EFD10889.1| threonyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291592149|gb|EFF23769.1| threonyl-tRNA synthetase [Enterococcus faecium E1636]
          Length = 647

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 9/167 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA HL+  A+  +  +     G  I              +T+ +L +IE  +  I+ +N
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKEN 132

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LP+  R++++++A+   A+     +    +    V           LC G HV STG I 
Sbjct: 133 LPIERRVLSKQEALEIFASDPYKVELISELPEEEVITAYQQGEFIDLCRGPHVPSTGRIQ 192

Query: 707 LLYI-------VSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKS 744
           +  +          +S    ++R+   A   ++A    +   E+ K 
Sbjct: 193 VFKLLSVAGAYWRGNSNNQMMQRVYGTAFFDKKALKEYIRLREEAKE 239


>gi|170091126|ref|XP_001876785.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648278|gb|EDR12521.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1237

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E    + ++R EA+    A   L      L+     L ++      RV+ +  E   L+ 
Sbjct: 557 EVEKASLVKRFEAV--DDALKSLEEDKRVLQEENKVLHLTNSETKQRVKHLEAEVETLKK 614

Query: 773 IHA 775
              
Sbjct: 615 QLQ 617


>gi|91774252|ref|YP_566944.1| phosphoesterase, RecJ-like protein [Methanococcoides burtonii DSM
           6242]
 gi|91713267|gb|ABE53194.1| Single-stranded DNA-specific exonuclease RecJ-like phosphoesterase
           [Methanococcoides burtonii DSM 6242]
          Length = 437

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 826 MLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            +     E K  +    T +L+    +     R +A  +GG GGG   ++A        K
Sbjct: 363 FVAINKVEGKVKISSRGTRELVSKGLDLAYAMRTAADAVGGQGGG--HNIASGASVEPEK 420

Query: 885 ADQAIAGVASFLKK 898
            ++ IA V   + +
Sbjct: 421 IEEFIALVDDIVAE 434


>gi|148229521|ref|NP_001088140.1| protein CIP2A homolog [Xenopus laevis]
 gi|82180702|sp|Q5XK92|CIP2A_XENLA RecName: Full=Protein CIP2A homolog
 gi|52789398|gb|AAH83020.1| LOC494846 protein [Xenopus laevis]
          Length = 906

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q + + L  Q E +K L   LKV     + ++ E+  +++ L      R  ++       
Sbjct: 750 QASYNLLTKQAETMKKLNDSLKVQNEQTIAQLNEVENQHKDLTKQLQDRDGKITNLQQKL 809

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             + +         + + ++++  +D L+K++   
Sbjct: 810 KLLEE----KIKTKQKEKEDMEETIDILRKELSKT 840


>gi|28376424|gb|AAM97266.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 446

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 52/138 (37%), Gaps = 38/138 (27%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQ 780
           E + G+RA   L      LK L    K+   ++  ++E + E  ++++ I+ +    KL+
Sbjct: 267 ELVPGKRA-QTLGEMKATLKELEKIRKL--VDLEKKLETMGELKKEIEKINEEGELLKLE 323

Query: 781 LNVEDLSCHKI-----------------------ADVNFMSH---IISEVDSKE------ 808
             +++ +  +I                        +V  +      ++ ++         
Sbjct: 324 AKIQEEAKAEITTLKSAERYGTLKENLKELEKKLGEVKSLGALKWQVAGIEPGTGSQGGK 383

Query: 809 LKSVMDALQKKIQSGIIM 826
           ++ + D L+ K+   + +
Sbjct: 384 IQKLADKLKNKLGELVAI 401


>gi|18312771|ref|NP_559438.1| hypothetical protein PAE1636 [Pyrobaculum aerophilum str. IM2]
 gi|18160253|gb|AAL63620.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 329

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L  + E+LK     LK     +  + +E+ E+ R +Q    K  + L   +L+  +    
Sbjct: 226 LKEKREELKKRREELKAEILQLALKRKELREKRRAVQEELEKYNVLLKALELA--EKNKA 283

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSG 823
              +  +    +  LK   +AL  K+ +G
Sbjct: 284 RVAARELR---AASLKERAEALYNKLLNG 309



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS---- 787
            + L+     +K   S LK S+  +   + ++ E+  +L+    + K ++    L     
Sbjct: 195 IARLVQDLTTVKQELSQLKASRQEIYKELTKLKEKREELKKRREELKAEILQLALKRKEL 254

Query: 788 -------CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                    ++   N +   +   +  + +     L+
Sbjct: 255 REKRRAVQEELEKYNVLLKALELAEKNKARVAARELR 291


>gi|303241340|ref|ZP_07327844.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
            CD2]
 gi|302591073|gb|EFL60817.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
            CD2]
          Length = 2109

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 738  QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
              +K+      LK  +  +   ++++ +  ++L+        +  +++L   K    N +
Sbjct: 1187 MHKKVLESFESLKQQRDALAESIKQLNKLIKELEKKPKDSSYEKEIKELKSEK----NAL 1242

Query: 798  SHIISEVDSKELKSVMDA 815
             +++  +++KE+ + +  
Sbjct: 1243 GNVVKNLNNKEVFNFLSD 1260


>gi|281211350|gb|EFA85515.1| DNA recombination/repair protein [Polysphondylium pallidum PN500]
          Length = 1301

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           E+L      LK    ++   +E +  + +K +    + +  +        K +    +  
Sbjct: 826 EQLNQEYDQLKSKSDSIQKEIERLTVDSKKNRSELNRLQQIVIQNRELLSKASGQTEIVE 885

Query: 800 IISEVDSKELKSVMDALQKKIQS 822
            + + + KEL+++ + L  K+  
Sbjct: 886 HLKQSE-KELRAINEDLIAKLSD 907


>gi|198419604|ref|XP_002123842.1| PREDICTED: similar to Dynein heavy chain 6, axonemal (Axonemal beta
            dynein heavy chain 6) (Ciliary dynein heavy chain 6),
            partial [Ciona intestinalis]
          Length = 2909

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 704  EIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------GQDEKLKSLASFLKVSQGNV 756
            EI     V        +RR    T       +         +  +L +     K     +
Sbjct: 2676 EIHTSVNVMAEKFYKELRRHYYTTPTSYLELINLYLGMLGEKKRQLVTARDRFKTGLSKL 2735

Query: 757  VGR---VEEIWEEYRKLQLIHAKRK-------LQLNVEDLSCHKIADVNFMSHIISEVDS 806
            +     V+ + EE   L+    ++         +L+V+     ++  V      +++V +
Sbjct: 2736 LETNDLVDSMQEELTALEPELKRKSGETEVLMEKLSVDQEKADQVRKVVLEDEAVAKVKA 2795

Query: 807  KELKSVMDALQKKIQSGIIMLVGISK 832
            +E +++ D  QK +   + +L   +K
Sbjct: 2796 EETQAIADDAQKDLDDALPILSAANK 2821


>gi|149040344|gb|EDL94382.1| rCG57812, isoform CRA_a [Rattus norvegicus]
          Length = 1234

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + L+  +  V+  VE+     ++L+    KR+ +   +    
Sbjct: 901 DEAKRIKGEQEKELSKFQNMLRNRKKEVINEVEKAP---KELRKELMKRRKEELAQSQHA 957

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 958 QEQE---FVQKQQQELDG-ALKKIIQQQKAELAN 987


>gi|281210705|gb|EFA84871.1| putative alanyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 249

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 70/209 (33%), Gaps = 20/209 (9%)

Query: 588 SATHLLHHALSTI--LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +A H+L  A+  +      VS          +  + T       + L+ IED  N II +
Sbjct: 15  TACHVLKGAIVKVLNTPITVSVECQNKVKGRVCVEYTLDDKPDDSTLQKIEDECNRIIKE 74

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           NLP+    M+R++A A      +   Y          V ++   +    +   C   H+ 
Sbjct: 75  NLPLNAFSMDRKEAEAKYTKEKVNNTYIYDKFPVPESVTTLTLVEIAGWNINCCPAVHLK 134

Query: 701 STGEIMLLYIVSESSIRAGIR---RIEAITGQRARSHLMGQDEK---------LKSLASF 748
           STGE+  + I   +          R + +      +    +            L+   + 
Sbjct: 135 STGELGGIKISGINHRPQKKELEFRFDIVASDAVDNKKKKKGGAAPAVTVVDPLEEHRAR 194

Query: 749 LKV-SQGNVVGRVEEIWEEYRKLQLIHAK 776
           +   +  ++  R+ E+       Q    +
Sbjct: 195 ISATNVKDLTARIVEMVIANANNQKTLEQ 223


>gi|218883350|ref|YP_002427732.1| transcriptional regulators-like protein [Desulfurococcus
           kamchatkensis 1221n]
 gi|218764966|gb|ACL10365.1| transcriptional regulators-like protein [Desulfurococcus
           kamchatkensis 1221n]
          Length = 237

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              + ++  L   LK  +      V+ + EE  +LQ     +  +LN        I +  
Sbjct: 161 KQLEARVNELTELLKHRENE----VQALKEEVNRLQNELEAKNKELNTC------IDNNR 210

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSG 823
            +   I     K L  V++ LQ  I +G
Sbjct: 211 LLKDKIDGF-MKNLYKVLEELQSTINTG 237


>gi|123472499|ref|XP_001319443.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121902226|gb|EAY07220.1| hypothetical protein TVAG_050350 [Trichomonas vaginalis G3]
          Length = 875

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 20/106 (18%)

Query: 727 TGQRARSHLMGQDEKLKSLAS------FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            G   +  +  +      L++       LKVS  +   R++ I  E + L+      KLQ
Sbjct: 156 VGIELQKLMKKKKRICDKLSAANTANQQLKVSITDNERRIQNISAENKLLKQEIDDLKLQ 215

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +  +                I   +S  +  + D L+ K++S  ++
Sbjct: 216 VGTQQA--------------IQGGNSNAIGRLNDDLKVKMESISVL 247


>gi|123416438|ref|XP_001304893.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121886376|gb|EAX91963.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 4045

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            + L  Q + L++    L+    ++   + +   E ++L+  + K +    +      ++
Sbjct: 827 LNSLQSQIQILQNGNEDLQNDIESITNALNQSQNENKELKEENQKIEKSNQILQYENKEV 886

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +             ++L++ +D L+ +  +
Sbjct: 887 KEQK-----------EKLQNQIDDLKNQNSN 906


>gi|118347014|ref|XP_001006984.1| hypothetical protein TTHERM_00198030 [Tetrahymena thermophila]
 gi|89288751|gb|EAR86739.1| hypothetical protein TTHERM_00198030 [Tetrahymena thermophila
           SB210]
          Length = 1674

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 56/149 (37%), Gaps = 22/149 (14%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---QLIHAKRKLQLNVEDLSC 788
            +     D ++      L+  +   + ++ ++ E+ ++L   +  + + K QL    +  
Sbjct: 538 LNQYENMDREIHQNEHQLQQERDQFLDKIRDLEEKNKELRQFEKENIQLKQQLYEIQIKS 597

Query: 789 HKIADVNFMSHIIS-------EVDSKELKSVM-DALQKKIQSGIIMLVGISKEKKASVL- 839
            +  +                + + + L+S++ + ++ KI++         ++ K   + 
Sbjct: 598 EEDKNHEVTMFKDDTTIFSQKDYNIQRLQSLIQEDVESKIKT-----FSNIEDIKILCIE 652

Query: 840 --IVVTEDLLDRFNAVDLARLSAKVLGGG 866
             I + E L  R +  DL    +  +  G
Sbjct: 653 KEIEI-EQLKKRID--DLVNQQSSQILSG 678


>gi|74201741|dbj|BAE28480.1| unnamed protein product [Mus musculus]
          Length = 959

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 19/179 (10%)

Query: 701 STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
              E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 69  QIAELKMQLAKREEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNK 128

Query: 756 VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
              +  ++ EE   L+             ++L   +  +V+ +   + + ++K  ++ + 
Sbjct: 129 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLED-EAKTHEAQIQ 187

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGG 867
            +++K    +  L    ++ K        +  L++          +LA     +L G G
Sbjct: 188 EMRQKHSQAVEELADQLEQTKRV------KATLEKAKQTLENERGELANEVKALLQGKG 240


>gi|14520284|ref|NP_125759.1| putative ss-DNA-specific exonuclease recj related [Pyrococcus
           abyssi GE5]
 gi|5457499|emb|CAB48990.1| recJ-like single-stranded exonuclease recJ homolog [Pyrococcus
           abyssi GE5]
          Length = 481

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 91/289 (31%), Gaps = 21/289 (7%)

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
                +  +   +   + ++G  +    ++ ++      T    + +    N  I +   
Sbjct: 168 GDMQENDGVFHGMNLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITG 227

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTHVSSTGE 704
              + +                   +  R +     +     G     +         G+
Sbjct: 228 DERKAIEWLRNNNFNPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEID-----RLIGD 282

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +++  +  +   R   R  E  T   A   L      L +L   + +       R  ++ 
Sbjct: 283 VVISPLYPQGDPRHEAR--EFATLLNATGRLN-----LGNLGVAVCLGDEEAFKRAMKMV 335

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           EEY++ Q+   K  +Q    ++   +   V ++   I +       S+            
Sbjct: 336 EEYKREQIEARKWLIQNWNSEVWEGEHVYVLYVGKNIRDTLVGIAASMAINAGLANPEKP 395

Query: 825 IMLVGISKEKKASVLIVVT----EDLLDRFNAVDLARLSAKVLGGGGGG 869
           +++   + E   +++        + L   ++  +  + +A+++GG GGG
Sbjct: 396 VIVFADTDED-PNLIKGSARTTEKALEKGYHLGEALKKAAEMIGGEGGG 443


>gi|330684509|gb|EGG96223.1| ATP-dependent chaperone protein ClpB [Staphylococcus epidermidis
           VCU121]
          Length = 863

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+        ++ ++ E  ++ +L  +++ L+    + 
Sbjct: 435 ASKQRLEELQEELSNEKEKQASLQSRVEQEKEKIAKLQE--KRAELDESRKALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KELK + D  Q +    
Sbjct: 493 NLEKAAELQY--GKIPQLE-KELKELEDVFQDEQGED 526


>gi|257096329|sp|Q5HZK9|CE63B_XENLA RecName: Full=Centrosomal protein of 63 kDa-B; Short=Cep63-B
          Length = 648

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--RKLQL 781
           EA   + + + L    ++   L+  L+  + +V   +  + +  ++LQ    +   KL+L
Sbjct: 443 EAAEHRMSLNALENLRQENCRLSELLQTQEPDVAQALVNLEQANQRLQRELLQTQEKLEL 502

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +         V+ +S  +     +EL+ + + L+
Sbjct: 503 IAQRRESEIQNAVDSISQELLNKQEQELRIMQERLK 538


>gi|254167831|ref|ZP_04874680.1| ribonuclease HII [Aciduliprofundum boonei T469]
 gi|289596631|ref|YP_003483327.1| ribonuclease HII [Aciduliprofundum boonei T469]
 gi|197623122|gb|EDY35688.1| ribonuclease HII [Aciduliprofundum boonei T469]
 gi|289534418|gb|ADD08765.1| ribonuclease HII [Aciduliprofundum boonei T469]
          Length = 212

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 58/153 (37%), Gaps = 19/153 (12%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ----------LIHA 775
           + G    + + G++ K+ SL   +K S+     R E + EE +K+               
Sbjct: 13  VIGPLVVAGVCGEESKIASL--RVKDSKKLSPKRRERLAEEIKKVASKIVVIKIEPEEID 70

Query: 776 KRKLQLNVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
             + ++ + ++        I+ +N     +   D  E +   + ++KK+   + ++    
Sbjct: 71  ALREKMTLNEIEVELFARVISQLNGDKVYVDAADVNEDR-FAEEIKKKLGKDVEIISEHK 129

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
            + K  ++   +  ++ +     +     K LG
Sbjct: 130 ADSKYPMVSAAS--IIAKVERDRIINELKKELG 160


>gi|154291978|ref|XP_001546567.1| hypothetical protein BC1G_14916 [Botryotinia fuckeliana B05.10]
 gi|150846335|gb|EDN21528.1| hypothetical protein BC1G_14916 [Botryotinia fuckeliana B05.10]
          Length = 756

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            +L     ++K L+   + SQ +   RV  + ++  KLQ    K   +    +     + 
Sbjct: 301 RNLADAQRRIKELSKEHQPSQTD-DSRVSALKKDIAKLQKEIGKLHAETASVEDEIKALQ 359

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           D       +     +  ++++D+L+++I 
Sbjct: 360 D---RIMQVGGEKLRAQRAMVDSLKEEID 385


>gi|123468897|ref|XP_001317664.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121900403|gb|EAY05441.1| hypothetical protein TVAG_197420 [Trichomonas vaginalis G3]
          Length = 1033

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK 790
             HL  ++ +L +    +   + ++  ++ E  +  ++L+L  +K+K+    +  +    
Sbjct: 363 LDHLNTRNSELTAELQLVNAKKDDLQKKLAEASQARQQLELNVSKQKVTFDALTTVHSET 422

Query: 791 IADVNFMSHIISEVDS------KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           + ++  +   +S +        K  K   D  +KKI     +L     E+K  +   + E
Sbjct: 423 VLELETVRKTLSNLSPLKENPEKTQKKEQDQFKKKIN----LLEQTISEQKKQISAAINE 478

Query: 845 DLLDRFNAVDLARLSA 860
            +  +    +LARLSA
Sbjct: 479 AISTK---GELARLSA 491


>gi|187729800|ref|YP_001837180.1| hypothetical protein pSOG2_p03 [Sulfolobus islandicus]
 gi|93117506|gb|ABE99655.1| hypothetical protein [Sulfolobus islandicus]
          Length = 307

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +   +++++ L   +K +  N   ++ +   E  K +    K K ++N E     K+   
Sbjct: 150 INDVEQRIQQLKVKMKEADKNTKSKISKKLRELYKKRSELYKSKNRINAELRKFEKV--- 206

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSG 823
                +I   +  +LK  +  L+ +I+S 
Sbjct: 207 ----TLIDNEEISDLKKKIAELKSEIKST 231


>gi|28277050|gb|AAH44834.1| Myh9 protein [Mus musculus]
          Length = 895

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 19/179 (10%)

Query: 701 STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
              E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 5   QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNK 64

Query: 756 VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
              +  ++ EE   L+             ++L   +  +V+ +   + + ++K  ++ + 
Sbjct: 65  AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLED-EAKTHEAQIQ 123

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGG 867
            +++K    +  L    ++ K        +  L++          +LA     +L G G
Sbjct: 124 EMRQKHSQAVEELADQLEQTKRV------KATLEKAKQTLENERGELANEVKALLQGKG 176


>gi|70945819|ref|XP_742689.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521809|emb|CAH84923.1| hypothetical protein PC301319.00.0 [Plasmodium chabaudi chabaudi]
          Length = 523

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 733 SHLMGQDEKLKSL-ASFLKVSQGNVVGRVE---EIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             ++ ++E L  +     K +   +   ++   ++ +E++KL+     +  + N + L  
Sbjct: 341 KDVLSKEEVLSRIDTHLNKKNYKEIENGLKESYKLTKEWKKLKHEIKTKLEEDNAKALQL 400

Query: 789 HKIADVNFMSHIISEVDSKELK--SVMDALQKKIQS 822
               ++  +     E++ + ++  ++   L++KIQ+
Sbjct: 401 ET--EIKDLFKTYLEINGEAIRLNTLKFELKEKIQN 434


>gi|290979954|ref|XP_002672698.1| predicted protein [Naegleria gruberi]
 gi|284086276|gb|EFC39954.1| predicted protein [Naegleria gruberi]
          Length = 308

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 72/241 (29%), Gaps = 28/241 (11%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGD------GIRLQITDVQKKAEGIFVHHAIVER 562
              ++  D+T F+ + GGQ  D G  + +       ++  +  V+   + I V H     
Sbjct: 59  DFYKINLDKTIFHPQGGGQPSDEGVLLINSLGGREMVKFCVKFVKLAGDLIQVDHFGWFE 118

Query: 563 G----------ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC- 611
           G          +     S+   ID + R   +  HSA H+L  A++          G   
Sbjct: 119 GIELSESEIIQMNDGNASVECRIDMEKRNIYTKIHSAGHVLDLAIAMCGYKWKPGRGYHF 178

Query: 612 -ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL------PVVTRIMNREDAIASGA 664
             +P    F            ++ +   + +++                 +  +      
Sbjct: 179 VDSPYCEYFHCNQIPESIPKFVEQVNQKITELLQDESENSTVVKSFIPYYSNIEENNLIV 238

Query: 665 AALLGTKYNDRVRVVSVEYEDGGV----HSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
              L  K+   +       +D       +    C GTHV    EI    +         I
Sbjct: 239 NNQLSEKFEHEIPTYLPPGQDVRFVKYGNVECACSGTHVDQFSEIGNFQMSKAKKQGQTI 298

Query: 721 R 721
           R
Sbjct: 299 R 299


>gi|239636499|ref|ZP_04677501.1| ATP-dependent chaperone protein ClpB [Staphylococcus warneri
           L37603]
 gi|239597854|gb|EEQ80349.1| ATP-dependent chaperone protein ClpB [Staphylococcus warneri
           L37603]
          Length = 868

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+        ++ ++ E  ++ +L  +++ L+    + 
Sbjct: 435 ASKQRLEELQEELSNEKEKQASLQSRVEQEKEKIAKLQE--KRAELDESRKALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KELK + D  Q +    
Sbjct: 493 NLEKAAELQY--GKIPQLE-KELKELEDVFQDEQGED 526


>gi|227550587|ref|ZP_03980636.1| threonine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257888612|ref|ZP_05668265.1| threonyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257897010|ref|ZP_05676663.1| threonyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|257898951|ref|ZP_05678604.1| threonyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|293378702|ref|ZP_06624860.1| threonine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|293571021|ref|ZP_06682064.1| threonyl-tRNA synthetase [Enterococcus faecium E980]
 gi|227180295|gb|EEI61267.1| threonine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257824666|gb|EEV51598.1| threonyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257833575|gb|EEV59996.1| threonyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|257836863|gb|EEV61937.1| threonyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|291608947|gb|EFF38226.1| threonyl-tRNA synthetase [Enterococcus faecium E980]
 gi|292642630|gb|EFF60782.1| threonine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 647

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 9/167 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA HL+  A+  +  +     G  I              +T+ +L +IE  +  I+ +N
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKEN 132

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LP+  R++++++A+   A+     +    +    V           LC G HV STG I 
Sbjct: 133 LPIERRVLSKQEALEIFASDPYKVELISELPEEEVITAYQQGEFIDLCRGPHVPSTGRIQ 192

Query: 707 LLYI-------VSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKS 744
           +  +          +S    ++R+   A   ++A    +   E+ K 
Sbjct: 193 VFKLLSVAGAYWRGNSNNQMMQRVYGTAFFDKKALKEYIRLREEAKE 239


>gi|154315421|ref|XP_001557033.1| hypothetical protein BC1G_04283 [Botryotinia fuckeliana B05.10]
 gi|150847223|gb|EDN22416.1| hypothetical protein BC1G_04283 [Botryotinia fuckeliana B05.10]
          Length = 1450

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 23/121 (19%)

Query: 731  ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDLS 787
            A S    Q      L       Q  V    + +    +E   L+   A  K+     +  
Sbjct: 1212 ASSDFERQKAIEAEL-------QDEVAKSKQSLYSVQDELEALKQDLAAEKIAKANAEAD 1264

Query: 788  CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                 +V      +   +   L+  + AL+ + ++    L    +E       + T++L 
Sbjct: 1265 LEAARNVK-----LDTSELDALRQELQALKNQHETA---LASAHQE-----AAMATQELT 1311

Query: 848  D 848
             
Sbjct: 1312 A 1312


>gi|328948112|ref|YP_004365449.1| hypothetical protein Tresu_1244 [Treponema succinifaciens DSM 2489]
 gi|328448436|gb|AEB14152.1| protein of unknown function DUF164 [Treponema succinifaciens DSM
           2489]
          Length = 287

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           R  L  +++ +  L   LK  +  +    +++ E    L    A    +L        +I
Sbjct: 110 RKELQREEKSMAELNDLLKSEEDLIASTEKDVNEARENLDKEIAACNEKLEALKAQEAEI 169

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +           +DS+ +      + K+ + GI+ + G   + 
Sbjct: 170 S---------EGIDSETIMKF-QRIIKRNRKGIVAVKGKVCDG 202


>gi|322792322|gb|EFZ16306.1| hypothetical protein SINV_05713 [Solenopsis invicta]
          Length = 672

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 13/93 (13%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL----QLNVEDLSCHK 790
           L  +   L++L+  L      ++ +++       +L    +K KL     L  E L   K
Sbjct: 386 LQRKQNSLRNLSDELG-KANEILSKLQN------ELASTKSKLKLRTSIALEQERLLDSK 438

Query: 791 IADVNFMSHIISEV--DSKELKSVMDALQKKIQ 821
             +V  + + +  +  D+K+ KS +D L+++I+
Sbjct: 439 QKEVGQLENKMEGLARDAKDAKSEVDNLKEQIK 471


>gi|269997171|ref|XP_002652597.1| lava lamp protein [Culex quinquefasciatus]
 gi|192759134|gb|EDV73629.1| lava lamp protein [Culex quinquefasciatus]
          Length = 2866

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 16/94 (17%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            + ++ ++++L+ L   L   +  V    +++ E  ++L+    + +  L    +      
Sbjct: 1135 NRVIEKEDELQYLQELLDAKKDEVETLHQQLVEVRKQLESAERRLQEALATPAVDE---- 1190

Query: 793  DVNFMSHIISEVDSKE------LKSVMDALQKKI 820
                    + E+D+K       LK     L+KK 
Sbjct: 1191 ------GRVQELDAKNKEQLEKLKKFAANLKKKN 1218


>gi|168206063|ref|ZP_02632068.1| hypothetical protein AC3_2415 [Clostridium perfringens E str.
           JGS1987]
 gi|169343672|ref|ZP_02864671.1| hypothetical protein CPC_2129 [Clostridium perfringens C str.
           JGS1495]
 gi|169298232|gb|EDS80322.1| hypothetical protein CPC_2129 [Clostridium perfringens C str.
           JGS1495]
 gi|170662458|gb|EDT15141.1| hypothetical protein AC3_2415 [Clostridium perfringens E str.
           JGS1987]
          Length = 451

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            ++L  + E+LKS  + LK ++      VE++ +E ++++  +A+    + V       +
Sbjct: 170 IANLKKEIERLKSENNSLKSAKDKNSHEVEKLSKELKEVKSNNAELNKTIEVSRSKEKNL 229

Query: 792 -ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             ++N +    + V+ KEL+     L++K  S    L  I  E K ++
Sbjct: 230 NNEINNLKSKNNNVE-KELR----DLKEKNNS----LSSIVTEAKKNL 268



 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 30/87 (34%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            + L  + E+++     LK     +      + EE +  +        ++        ++
Sbjct: 121 LNDLKDKKEEIEKSREELKNKFNKLNSENSNLKEELKNTKNRINNSNEEIANLKKEIERL 180

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQK 818
              N       + +S E++ +   L++
Sbjct: 181 KSENNSLKSAKDKNSHEVEKLSKELKE 207


>gi|183220356|ref|YP_001838352.1| flagellar protein B [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
 gi|189910471|ref|YP_001962026.1| hypothetical protein LBF_0918 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775147|gb|ABZ93448.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778778|gb|ABZ97076.1| Flagellar protein B [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 216

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           ++A+  L+   E+L+ +   L+    ++     R+EE+ E  ++ +   A++  +   E+
Sbjct: 66  EKAKERLIADREELEQMKRELEEKSSSLNADKERLEELKEGIQRKEKEMAEKAKK---EN 122

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVM 813
               K   V  +++ ++ +  +  + ++
Sbjct: 123 ARAEK---VKVLANKVANMPPESARDML 147


>gi|72382277|ref|YP_291632.1| histidine kinase [Prochlorococcus marinus str. NATL2A]
 gi|72002127|gb|AAZ57929.1| histidine kinase [Prochlorococcus marinus str. NATL2A]
          Length = 377

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 19/112 (16%)

Query: 726 ITGQRARSHLMG-QDEKLKSLASFLKVSQGNVV---GRVEEIWEE-----YRKLQLIHAK 776
           +T +R+  +    Q+  L   A  LK     ++    R+E++ ++      ++L+    +
Sbjct: 138 LTNKRSLDYQRQLQERMLGDAAHELKTPLTALMLLGDRLEDLVKKKDRPLIKRLRKEILR 197

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--------LKSVMDALQKKI 820
            KL +N        +   +    +   ++ +E        LK + D  +KK+
Sbjct: 198 LKLMVNDLLELSRLVNSSSVQEELTKTINMEEIVLSSWNTLKPLAD--KKKL 247


>gi|291335583|gb|ADD95193.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C507]
          Length = 794

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 727 TGQRARSHLMGQDEKLKSL------ASFLKVSQGNVVGRVEEIWEE--YRKLQLIHAKRK 778
           TG+     L  Q    + L       + ++  + ++  R+ ++ +E   ++L+L   K K
Sbjct: 430 TGEGIARRLREQIAAYEELDPFARQMAVIEAERESIQERINKVKDEELRKELELAANKLK 489

Query: 779 -LQLNVEDLSCH-KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            L++  E+     +I ++       +  ++++L + +D    +++
Sbjct: 490 GLKIAKEEAKIQNEIINLQLQKEDQANAENEKLSNRIDNYHDQLK 534


>gi|303310257|ref|XP_003065141.1| SMC proteins Flexible Hinge Domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240104801|gb|EER22996.1| SMC proteins Flexible Hinge Domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320033964|gb|EFW15910.1| condensin subunit Cut14 [Coccidioides posadasii str. Silveira]
          Length = 1179

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 42/175 (24%)

Query: 729 QRARSHLMGQDEKLKSLA----SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
             AR+     D KL  +          S  +++  VEE+     +L+   A+ + +    
Sbjct: 712 DSARATKQELDLKLHEIKLAEEQINGNSSSSIIHTVEEMRTNIEQLKKNIAEAQARHAEA 771

Query: 785 DLSCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
                +I     M+      DSK  EL++ +D L+KK+              K+S+ +  
Sbjct: 772 TKDVKRIE--KDMAEFNDNKDSKLAELQASLDGLKKKL-------------GKSSISV-- 814

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            + L     A  +                    Q+ G +   A++ +A   + LK
Sbjct: 815 -KTLQKELQASQI-----------------DSEQA-GSDLTTAEEQLAEADAALK 850


>gi|256420753|ref|YP_003121406.1| 50S ribosomal protein L7/L12 [Chitinophaga pinensis DSM 2588]
 gi|256035661|gb|ACU59205.1| ribosomal protein L7/L12 [Chitinophaga pinensis DSM 2588]
          Length = 124

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 17/92 (18%)

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ----SGIIML------VGISKEKKASVLIV 841
           ADV  ++  +  +  KE++ + D L+ +      +  +++         + E+K +  ++
Sbjct: 2   ADVKALAEQLVGLTVKEVQELADFLKSEYGIEPAAAAVVVSGDNGSGAAAAEEKTAFNVI 61

Query: 842 VTEDLLDRFNAVDLARLS-------AKVLGGG 866
           +      + N V + +         AK L  G
Sbjct: 62  LKNAGASKLNVVKIVKDLTGLGLKEAKELVDG 93


>gi|225556153|gb|EEH04442.1| vacuolar sorting-associated protein [Ajellomyces capsulatus G186AR]
          Length = 568

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 54/159 (33%), Gaps = 12/159 (7%)

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
            R  V+S +  + GV    +C            L        I    R+ E    +   +
Sbjct: 113 HRPSVISFQRVNDGVCDYEMCCDGSDEWARVGGLKCENRCKEIGKEWRKNEEKRHKSLTA 172

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-----EEYR--KLQLIHAKRKLQLNVEDL 786
            +  + E +K+ A      +  V  R+ ++       E +   L+      +     + +
Sbjct: 173 AVKKRAELVKAAAKL----RKEVEDRISDLEVEVVASELKVQNLEQALETVRANERGKVV 228

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                  VN ++ +  E   +EL+  +  ++++    ++
Sbjct: 229 KGQNKGKVNVLAGLAKER-VEELRGALVQVRRERDENLV 266


>gi|217967598|ref|YP_002353104.1| phosphoesterase RecJ domain protein [Dictyoglomus turgidum DSM
           6724]
 gi|217336697|gb|ACK42490.1| phosphoesterase RecJ domain protein [Dictyoglomus turgidum DSM
           6724]
          Length = 332

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 76/180 (42%), Gaps = 26/180 (14%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           IT   +        + LK  +  +K         + +I +E  + + + + + + + +  
Sbjct: 162 ITDTGSFKFSNTNYKSLKIASDLVKKGAN-----ISKISKEIYEKRKMASLKLMGIALLR 216

Query: 786 LSCHKIADVNFMSH---IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
           L  ++    +F+      ++    ++++ ++D L+   ++ +++L     ++K  V    
Sbjct: 217 LQLYRNIGWSFIEEEDMKVNGASQEDIEGIIDLLRTLKEADLVVLFYPYNKEKIKV---- 272

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA-----DQAIAGVASFLK 897
              L  + +++D++RL+ K    GGGG +     + G   +K      D  I  + S++ 
Sbjct: 273 --SLRSKKDSIDVSRLALKF---GGGGHKE----AAGFQIDKTQMNSYDDFIKKIDSYIN 323


>gi|159117990|ref|XP_001709214.1| Axoneme-associated protein GASP-180 [Giardia lamblia ATCC 50803]
 gi|157437330|gb|EDO81540.1| Axoneme-associated protein GASP-180 [Giardia lamblia ATCC 50803]
 gi|213495868|gb|ACJ49154.1| head-stalk protein GHSP-180 [Giardia intestinalis]
          Length = 1585

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 29/116 (25%)

Query: 731  ARSHLMGQDEKLKSLASFLKVSQG--NVVGRVEEIWEE-------YRKLQLIHAKRKLQL 781
            A+  +  +D  +  L   L+ ++   ++  R+ E+ +E        +      A+ + QL
Sbjct: 1280 AKELVAERDATIDELKQRLRDTEEYDDLKERIAELDDEIAVLNDGLKDKDAEIAELREQL 1339

Query: 782  NVE----------------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              +                  +  ++ D N  + +  E+++K  +S++D LQ +I 
Sbjct: 1340 EAQPTATTVYPESGEEVGDAAALREVQDEN--AALKDELEAK--RSLIDELQDEID 1391


>gi|242399573|ref|YP_002994998.1| alanyl-tRNA synthetase-like protein [Thermococcus sibiricus MM 739]
 gi|242265967|gb|ACS90649.1| alanyl-tRNA synthetase-like protein [Thermococcus sibiricus MM 739]
          Length = 148

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 2/129 (1%)

Query: 585 INHSATHLLHHALSTILGSHV-SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             H+A H+L  A+  +LG          +  +  R  +  ++  T  E+  IE+  N  I
Sbjct: 4   KTHTALHVLKGAVVKVLGEEAKWTAAVYVNGNHGRLTIKFNRKPTKEEIAMIEEFANRKI 63

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N P+    + RE+A +     +          + +++       +   C   H  +TG
Sbjct: 64  EENAPIKVHELPREEAESRFGEDMYDLFPIPE-EIRTLKVVVIEDWNINACNKEHTKTTG 122

Query: 704 EIMLLYIVS 712
           EI  + I  
Sbjct: 123 EIGQIKIRK 131


>gi|225871286|ref|YP_002747233.1| antiphagocytic cell surface-anchored fibrinogen-and IgG Fc-binding
           protein SeM [Streptococcus equi subsp. equi 4047]
 gi|225700690|emb|CAW95289.1| antiphagocytic cell surface-anchored fibrinogen-and IgG Fc-binding
           protein SeM [Streptococcus equi subsp. equi 4047]
          Length = 534

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 24/134 (17%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-----------LIHAKRKLQ 780
            + +  Q E L+   S L+  +      +++  +E + L              + K K +
Sbjct: 152 LAAIKSQQEMLRERDSQLRNLEKEKEQELQKAKDERQALTESFNKTLSRSTKEYNKLKTE 211

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVM--DALQKKIQSGIIMLVGISKEKKASV 838
           L  E     K+     ++  +S  ++   K+      L  K+ S        +   KA  
Sbjct: 212 LAKEKEKAAKM--TKELADKLSNAEASRDKAFAVSKDLADKLSS------AEASRDKAF- 262

Query: 839 LIVVTEDLLDRFNA 852
              V++DL D+  A
Sbjct: 263 --AVSKDLADKLAA 274


>gi|28376412|gb|AAM97260.1| major surface protein 3 [Anaplasma marginale str. Florida]
 gi|28376436|gb|AAM97272.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 454

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 52/138 (37%), Gaps = 38/138 (27%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQ 780
           E + G+RA   L      LK L    K+   ++  ++E + E  ++++ I+ +    KL+
Sbjct: 267 ELVPGKRA-QTLGEMKATLKELEKIRKL--VDLEKKLETMGELKKEIEKINEEGELLKLE 323

Query: 781 LNVEDLSCHKI-----------------------ADVNFMSH---IISEVDSKE------ 808
             +++ +  +I                        +V  +      ++ ++         
Sbjct: 324 AKIQEEAKAEITTLKSAERYGTLKENLKELEKKLGEVKSLGALKWQVAGIEPGTGSQGGK 383

Query: 809 LKSVMDALQKKIQSGIIM 826
           ++ + D L+ K+   + +
Sbjct: 384 IQKLADKLKNKLGELVAI 401


>gi|57642146|ref|YP_184624.1| chromosome segregation protein [Thermococcus kodakarensis KOD1]
 gi|68565874|sp|Q5JHN1|RAD50_PYRKO RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|57160470|dbj|BAD86400.1| DNA double-strand break repair ATPase Rad50 homolog [Thermococcus
           kodakarensis KOD1]
          Length = 883

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 730 RARSHLMGQDEKLKSLASF---LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           +AR  L  ++  L+ L +    ++        RVEE+ E+ ++L+ +  K K    +   
Sbjct: 242 KARVELKSEEGNLRELEAKKSGIQSMIRETEKRVEELKEKVKELESLEEKAKEYERLSRF 301

Query: 787 SCHKIADVNFMSHIISEVD--SKELKSVMDALQKK 819
             +    +N +  +++     ++ L+  +D L KK
Sbjct: 302 YRNFTEGINRIEKLLATYSQQAENLRERIDELSKK 336


>gi|328783614|ref|XP_623957.3| PREDICTED: dynein beta chain, ciliary-like [Apis mellifera]
          Length = 4459

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 50/133 (37%), Gaps = 21/133 (15%)

Query: 724  EAITGQRARSHL--MGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYRKLQLIHAKRK 778
              +  +R  ++       E++      LK     + GRV  +    E+ R   +   K K
Sbjct: 3001 HYLASERRYNYTTPKSFLEQISLYTRLLKTKASELRGRVARLENGLEKLRSTAVQVDKLK 3060

Query: 779  LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             +L +++L   +  +       I  V++ +++      ++K        +   +E K ++
Sbjct: 3061 EKLAMQELELQQKNEAADTLIAIVGVETDKVQ------KEKA-------IADEEESKVAI 3107

Query: 839  LIVVTEDLLDRFN 851
            +    E++  +  
Sbjct: 3108 IA---EEVSKKQK 3117


>gi|307207513|gb|EFN85216.1| Serologically defined colon cancer antigen 8 [Harpegnathos
           saltator]
          Length = 810

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 79/262 (30%), Gaps = 36/262 (13%)

Query: 580 RRQLSINHSATHLLHHALST--ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           +  L  +      +H       +       +GS      +   +     I+  E +  + 
Sbjct: 242 KCALQDHKDCAETIHECRERDAVNDHDADNSGSKKEKPLVGPSIVFESRISELEAQLTQT 301

Query: 638 NV--------NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            +        N    + L          +       A L  KY   +++   +       
Sbjct: 302 RLELRKAQEENQANLKRLSDSCSHEGSPELRTELDRA-LRAKYEAEMKLEESQKLLSVAR 360

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
                       T +         +     IRR++          L  Q EKL+  A   
Sbjct: 361 DKETEATQRAKRTMDDRQQIEFERNQSEMEIRRLK--------DELERQHEKLREAAQEA 412

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
                        I EE ++L+  + ++  QL+ +  S  +IA+ + +       +  EL
Sbjct: 413 N----------RRITEERQQLERRYNQQVEQLSADIASHWEIANKSQLESEKQRREINEL 462

Query: 810 K-------SVMDALQKKIQSGI 824
           +       +  D L+K++Q+ I
Sbjct: 463 RRELSQKQTSSDNLKKELQNKI 484


>gi|283470190|emb|CAQ49401.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 869

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++ ++ E  ++ QL   ++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIAKLQE--KRAQLDENRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|270339929|ref|ZP_06006483.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333296|gb|EFA44082.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 1098

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 729 QRARSHLMGQDEKLKSLASFL--KVSQGNVVGRVEEIWEEYRKLQ------LIHAKRKLQ 780
           +    +L  Q + LK+  + L  K     + G+V ++ E+ + LQ          + K  
Sbjct: 138 KAVNENLQNQIDALKAFENELGGKQGAEELKGQVAKLQEDLKALQASSGNAQAIKELKEL 197

Query: 781 LNVEDLSCHK-IADVNFMSHIIS 802
           +   +    K + ++N ++  + 
Sbjct: 198 MEKANKDVEKTVKNINILTVFVK 220


>gi|224062415|ref|XP_002195680.1| PREDICTED: similar to testis expressed 9 [Taeniopygia guttata]
          Length = 446

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR----KLQLNVE 784
            RA   +     +L  L    K      +  +EE+  E +KLQ    +     K QL + 
Sbjct: 355 NRALEEVEKYKVELNKLKQRNKDVANQELKMIEELKTENKKLQKQKGELITGFKKQLKLI 414

Query: 785 DLSCHK---IADVNFMSHIISEVDSKEL 809
           D+   +   I     +S    E   K L
Sbjct: 415 DILKRQKMHIEAAKMLSFTEEEF-MKAL 441


>gi|268324377|emb|CBH37965.1| hypothetical secreted protein, containing HAMP domain [uncultured
           archaeon]
          Length = 147

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE-EYRKLQLIHAKRKL 779
            R+E  TG      L         +AS LK     +V +  +I E E  +L+      + 
Sbjct: 48  YRVEVKTGDE----LEDLANSFNKVASDLKGYTKELVEKETKIRELEIERLEKYSRNLEQ 103

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           ++ + ++   +      +S I      K+L+     +++K    
Sbjct: 104 KVKMLEIKIDREKTKKAVSEITETEYFKKLREEAIDIREKRGKA 147


>gi|237756393|ref|ZP_04584937.1| acriflavin resistance protein AcrE [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691444|gb|EEP60508.1| acriflavin resistance protein AcrE [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 388

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 10/140 (7%)

Query: 722 RIEAITGQRA----RSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIH 774
           R EA+  ++A            E+ K+L       K     +  ++        ++    
Sbjct: 125 REEALAARKAALENYEFAKRTYERFKNLYQENAISKQQLEEIETKMIAAKSMVDQVDAKL 184

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + K + +       ++  +   + I +  D   LK + D          I ++G   EK
Sbjct: 185 GQLKAKESQVKAKLAQVNVMQGYTVIKAPFDGYVLKKMNDEGDMAAPGMPIFIIG---EK 241

Query: 835 KASVLIVVTEDLLDRFNAVD 854
           K   L  + E LLD+    D
Sbjct: 242 KLQFLANLDESLLDKVKVGD 261


>gi|291294467|ref|YP_003505865.1| hypothetical protein Mrub_0064 [Meiothermus ruber DSM 1279]
 gi|290469426|gb|ADD26845.1| protein of unknown function DUF164 [Meiothermus ruber DSM 1279]
          Length = 245

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           TG + ++    Q  +L  L   L+ +  ++VG++  + E+  KL+   A+ K Q+     
Sbjct: 85  TGAKEQTQYGEQIRQLSGLIEDLEGNNKDIVGQIMPLLEQIEKLEAELAQVKAQMEEARP 144

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVM--DALQKKIQSGII 825
               +   N     +  ++++     +  D L   I + I+
Sbjct: 145 KLEALETAN--QARVDALEAEYQSKKVSRDQLAATIPTAIV 183


>gi|224054984|ref|XP_002198194.1| PREDICTED: similar to spindle pole body component 25 [Taeniopygia
           guttata]
 gi|224054990|ref|XP_002198209.1| PREDICTED: SPC25, NDC80 kinetochore complex component, homolog (S.
           cerevisiae) [Taeniopygia guttata]
          Length = 234

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 733 SHLMGQDEKLKSLASFLKVSQG---NVVGRVEEIWEEY-RKLQLIHAKRKLQLNVEDLSC 788
            ++  ++E+L  + S L   Q    N+   ++E+ EE  +K+++  +K K          
Sbjct: 80  KYVAEKEEQLSEIKSKLNQEQEQQKNLTDSIQELEEELMKKMEIKSSKNKAAKE----KV 135

Query: 789 HKIADVNFMSHIISEVDS 806
            K++ +  +      ++ 
Sbjct: 136 EKVSKIKTLFKEHLALEM 153


>gi|149719485|ref|XP_001505001.1| PREDICTED: similar to Nucleobindin-2 precursor (DNA-binding protein
           NEFA) (Gastric cancer antigen Zg4) [Equus caballus]
          Length = 420

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 3/117 (2%)

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAIT--GQRARSHLMG-QDEKLKSLASFLKVSQ 753
            HV +  +     +V+         + E +   G           +E+LK+  + + + +
Sbjct: 299 EHVMNEVDANKDRLVTLEEFLKATEKKEFLEPDGWETLDQQQFFTEEELKAYENLISLQE 358

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
             +  + +E+ ++  +LQ  H + + Q      +  ++        I       ELK
Sbjct: 359 NELKKKADELQKQKEELQRQHDQLEAQKLEYHQAVQQMEQKKLQQEIPPSGPGGELK 415


>gi|126657277|ref|ZP_01728443.1| threonyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126621548|gb|EAZ92259.1| threonyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 607

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H++  A+  +        G   T  G  +D    +P T  +LK+I+  +  II + 
Sbjct: 31  HTASHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDVPEPFTDKDLKAIKKEMIKIIKKK 89

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVSSTG 703
           LP+    ++ E+A        L   Y   +       +     G     LC G HV +TG
Sbjct: 90  LPLTREEVSAEEA--KKRITELQEPYKLEILEGLEPPITLYHLGDQWWDLCAGPHVETTG 147

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           ++         S+     R     G   ++ L                +   +      +
Sbjct: 148 DLNP-KAFEIESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLAEYKRRK 194

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++R+L    
Sbjct: 195 EEALKRDHRRLGKEL 209


>gi|308162626|gb|EFO65011.1| Coiled-coil protein [Giardia lamblia P15]
          Length = 1118

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK----IA 792
             ++K++ +    K  Q  +   V ++  + ++L+    +   ++N       +      
Sbjct: 57  DNEQKVRQVQEQFKKHQEGLEAEVTKLLTDIKRLEKEKMQFLSKMNEYKKENEERMTRFK 116

Query: 793 DVNFMSHIISE--VDSKEL-KSVMDALQK 818
           DV      I +  ++   L +  +D ++ 
Sbjct: 117 DVT--KQRIDQLILEVDALRRDNVDDVRN 143


>gi|159107763|ref|XP_001704158.1| Hypothetical protein GL50803_32999 [Giardia lamblia ATCC 50803]
 gi|157432211|gb|EDO76484.1| hypothetical protein GL50803_32999 [Giardia lamblia ATCC 50803]
          Length = 461

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 68/185 (36%), Gaps = 35/185 (18%)

Query: 729 QRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           +++   +  Q    D  +  L   L   +  +  +  E+ E   K+ L+ A+ + +    
Sbjct: 118 EQSLDAINAQVSTSDADISRLNDELSTLKDQLSSKCLELEEANSKIDLLKAELEEKTIES 177

Query: 785 DLSCHKIADVNFMS-------HIISEVDSKELKSVMDALQ---KKIQSGIIMLVGISK-- 832
             S   ++ +  ++         + E+   EL+ ++D+ +   KK+ + I  L+      
Sbjct: 178 ASSNPDLSSIPSLARSTSRSTQNLGELSLDELRELLDSERRRIKKLNNKITALMTEKNIL 237

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN---GNKADQAI 889
             +         + +   +A +L   +A VL        P +A   G +    +  +QA+
Sbjct: 238 NDQI--------NAMKTSSAKNLPLPAAPVLEE------PSLAT--GTDDVRISDLEQAL 281

Query: 890 AGVAS 894
                
Sbjct: 282 KDANE 286


>gi|28376359|gb|AAO41093.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 920

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             +  +L  +   LK  +   +  +E   E   +L+    K K    +E L   KI +V 
Sbjct: 560 EERLRELSKVKETLKQLKEIKLVDLERKLETMGELKKEIEKIKNAQELEKLEQEKIKEVE 619

Query: 796 FMSHIISEVD--SKELKSVMDALQKKIQSG 823
                +   +     LK     L+ ++++G
Sbjct: 620 AALKKVKSGERVGSSLKE---ELKGQLEAG 646


>gi|83319558|ref|YP_424804.1| hypothetical protein MCAP_0862 [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283444|gb|ABC01376.1| membrane protein, putative [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 750

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A++ L  + E+LK     LK ++ ++  ++ E  +    L    +  K +    +   
Sbjct: 574 HEAQTLLKDKQEELKERLDQLKKNKTDLPNKISEKTKSVESLTKQISDIKEKNEKIESLI 633

Query: 789 HKIADVN 795
            KI +  
Sbjct: 634 KKIKNKK 640


>gi|197102076|ref|NP_001125162.1| homer protein homolog 1 [Pongo abelii]
 gi|55727168|emb|CAH90340.1| hypothetical protein [Pongo abelii]
          Length = 354

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 714 SSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             +   +  +E ++ Q     +H    ++ ++ L   LKV +  +  R+++  +  R+LQ
Sbjct: 223 ERLHKRVTELECVSSQANAVHTHKTELNQTIQELEETLKVKEEEI-ERLKQEIDNARELQ 281

Query: 772 LIHAKRKLQLNVEDLSCHKIAD 793
                   +L   ++    +  
Sbjct: 282 EQRDSLTQKLQEVEIRNKDLEG 303


>gi|297527150|ref|YP_003669174.1| hypothetical protein Shell_1175 [Staphylothermus hellenicus DSM
           12710]
 gi|297256066|gb|ADI32275.1| hypothetical protein Shell_1175 [Staphylothermus hellenicus DSM
           12710]
          Length = 230

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           GEI+L+      + +   R         A   L  + E  +      K     +   + E
Sbjct: 64  GEIVLVPEWEYEARKVENRLERLKKRSAALEDLYAKKEVPRHAYEAFK---KKLEEALME 120

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             EE +K++ +  KR+ +L    +   K      +S+I  EV  K  K+  D L+K ++
Sbjct: 121 AKEESKKVKDLLKKRQYELEDIIVELEKALTSLKISYIAGEVPDKAYKAAADQLRKHLE 179


>gi|242007443|ref|XP_002424549.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212507992|gb|EEB11811.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 2452

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------HLMGQDEKLKSLASFLKV 751
           H      +  +    E S   G  R+EA      +        L  +  + K LA+ L  
Sbjct: 831 HSLLMSNLDAIKATFERSEEEGKLRLEAQLSDTVKECTALKSALKEEKTRFKELAASL-- 888

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
            +       E + EE +  +    + ++     +L   KI +++     ++ + +K
Sbjct: 889 -ERQTAIAKERMLEEKKLAEKAREQLEIVNQELELKNKKIEELSLKIRELNNLPTK 943


>gi|172038860|ref|YP_001805361.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171700314|gb|ACB53295.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 608

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 69/195 (35%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H++  A+  +        G   T  G  +D    +P T  +LK+I+  +  II + 
Sbjct: 32  HTASHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDVPEPFTDKDLKAIKKEMIKIIKKK 90

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVSSTG 703
           LP++   ++ E+A        L   Y   +       +     G     LC G HV +TG
Sbjct: 91  LPLIREEVSAEEA--KKRITELQEPYKLEILEGLEPPITLYHLGDQWWDLCAGPHVETTG 148

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           ++         S+     R     G   ++ L                +   +      +
Sbjct: 149 DLNP-KAFDIESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLAEYKRRK 195

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++R+L    
Sbjct: 196 EEALKRDHRRLGKEL 210


>gi|326675683|ref|XP_002665261.2| PREDICTED: centromere protein F [Danio rerio]
          Length = 2708

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 24/148 (16%)

Query: 726  ITGQRARSHLMGQDEKL--KSLASFLKVSQGNVVGRVEEIWEEYRKLQ------------ 771
            I    A      + + L  K   + LKV Q  +  +  +++E+Y  LQ            
Sbjct: 927  IAENLAIDLEEEKKKALSIKQENTQLKVKQEEIENKANDLFEKYESLQKLHDAVCQENAN 986

Query: 772  --LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                 +     L  +D    +IA +       + + +  LK+ ++ LQ +  S + ++  
Sbjct: 987  HLKEISIVTEALAEKDAMAERIALIKTELETSNNLSA-TLKNSLENLQTQFDSSVELISS 1045

Query: 830  ISK------EKKASVLIVVTEDLLDRFN 851
            + K      ++K+ + I + ++L +R N
Sbjct: 1046 LEKKLHDMSDEKSLLEISI-KELTERHN 1072


>gi|15193244|gb|AAK91740.1|AF400249_1 axoneme-associated protein GASP-180 [Giardia intestinalis]
          Length = 1627

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 29/116 (25%)

Query: 731  ARSHLMGQDEKLKSLASFLKVSQG--NVVGRVEEIWEE-------YRKLQLIHAKRKLQL 781
            A+  +  +D  +  L   L+ ++   ++  R+ E+ +E        +      A+ + QL
Sbjct: 1322 AKELVAERDATIDELKQRLRDTEEYDDLKERIAELDDEIAVLNDGLKDKDAEIAELREQL 1381

Query: 782  NVE----------------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              +                  +  ++ D N  + +  E+++K  +S++D LQ +I 
Sbjct: 1382 EAQPTATTVYPESGEEVGDAAALREVQDEN--AALKDELEAK--RSLIDELQDEID 1433


>gi|28376434|gb|AAM97271.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 465

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 21/140 (15%)

Query: 737 GQDEKLKSLASFLK-VSQGNV--VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             DE    L S L       +  +  V++  E  ++L+    + +L          K+ +
Sbjct: 70  NADEIEGELKSALGLARLEKLAELELVKQRLESMKELEKKIEEAQLTAEELREMREKLKE 129

Query: 794 VNFMSHIISEVDSKELKSV-----MDALQKKIQSGIIMLVGISKEKKASVLIVVT---ED 845
           +          D   LK        D L+K ++     ++   + KK+ ++  V    + 
Sbjct: 130 LAGR-----GEDPAGLKKAIEEANADELKKGLKE----VLKTLEGKKSELVREVGRLKKG 180

Query: 846 LLDRFNAVD-LARLSAKVLG 864
            L+   A   L       LG
Sbjct: 181 ALEEMKAGKGLVEEVKGELG 200


>gi|295913628|gb|ADG58058.1| transcription factor [Lycoris longituba]
          Length = 204

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 26/61 (42%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            +  +    +L+S A  LK S  N+  +++++  E  +L+    + K +    +     +
Sbjct: 125 LNDAIRMVNQLRSEAQKLKDSNENLQEKIKDLKTEKNELRDEKQRLKQEKENLEQQVKLL 184

Query: 792 A 792
            
Sbjct: 185 N 185


>gi|224116012|ref|XP_002332026.1| predicted protein [Populus trichocarpa]
 gi|222875251|gb|EEF12382.1| predicted protein [Populus trichocarpa]
          Length = 1378

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/66 (12%), Positives = 26/66 (39%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
                +  +++ ++   +V       +V+++ E  ++L+      + +  V       +A
Sbjct: 853 DDTQKKYSEVQEISEERRVKLEETEKKVQQLQESLQRLEEKLTNLESENKVLRQQALSMA 912

Query: 793 DVNFMS 798
              F+S
Sbjct: 913 PNKFLS 918


>gi|189194603|ref|XP_001933640.1| condensin subunit Cut3 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187979204|gb|EDU45830.1| condensin subunit Cut3 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1471

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 12/109 (11%)

Query: 733  SHLMGQDEKLKSL------ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++     +++ L          K    ++   +  + +E  KL+      + ++     
Sbjct: 1009 RNIADCQRRIQELGSEQTSTKTDKGRISSLEKSIASMEKEVSKLRSETEDIEAEIKALQD 1068

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
               +I  V              LK  +D L ++  +  +     SKE+K
Sbjct: 1069 KIMEIGGVKLRGQKAK---VDGLKGQIDTLTEQASNAEV---SKSKEEK 1111


>gi|153869352|ref|ZP_01998985.1| Response regulator receiver [Beggiatoa sp. PS]
 gi|152074125|gb|EDN71014.1| Response regulator receiver [Beggiatoa sp. PS]
          Length = 1610

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 23/63 (36%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  Q E+++ +   L+  +  +  +  E+     +LQ    + + Q         ++ 
Sbjct: 790 EELQAQQEEMQQINEELQSQREELEHKQAELQHRNEELQSQSEEVQSQSEELQTQQEELK 849

Query: 793 DVN 795
             N
Sbjct: 850 QTN 852


>gi|28396191|gb|AAO39003.1| HOMER1G [Rattus norvegicus]
 gi|149059031|gb|EDM10038.1| homer homolog 1 (Drosophila), isoform CRA_a [Rattus norvegicus]
 gi|149059032|gb|EDM10039.1| homer homolog 1 (Drosophila), isoform CRA_a [Rattus norvegicus]
 gi|149059033|gb|EDM10040.1| homer homolog 1 (Drosophila), isoform CRA_a [Rattus norvegicus]
          Length = 192

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 714 SSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             +   +  +E ++ Q     SH     + ++ L   LKV +  +  R+++  +  R+LQ
Sbjct: 61  ERLHKRVTELECVSSQANAVHSHKTELSQTVQELEETLKVKEEEI-ERLKQEIDNARELQ 119

Query: 772 LIHAKRKLQLNVEDLSCHKIAD 793
                   +L   ++    +  
Sbjct: 120 EQRDSLTQKLQEVEIRNKDLEG 141


>gi|311069988|ref|YP_003974911.1| secreted cell wall DL-endopeptidase [Bacillus atrophaeus 1942]
 gi|310870505|gb|ADP33980.1| secreted cell wall DL-endopeptidase [Bacillus atrophaeus 1942]
          Length = 471

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 24/126 (19%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
                Q +  K L         +   +VE+  EE  K +      K ++   +    K  
Sbjct: 60  ELQNNQSKIEKELKEI-NAKALDTSNKVEDKKEENDKTKKEIKALKKEIKETEARIEKRN 118

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGI---IMLVGISKEKKASVLIVVT------ 843
           ++              LK  + +LQ+   S     ++L   S     S    V+      
Sbjct: 119 EI--------------LKKRVRSLQESGGSQGYIDVLLGSTSFGDFVSRATAVSSIVDAD 164

Query: 844 EDLLDR 849
           +DL+ +
Sbjct: 165 KDLIKQ 170


>gi|307185093|gb|EFN71292.1| Myosin-Va [Camponotus floridanus]
          Length = 1832

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNV------VGRVE-EIWEEYRKLQLIHAKRKLQL 781
            ++ +  +  ++++LK++   LK  +           R+  +  EE +KLQ  + + + +L
Sbjct: 962  KKLKKVVQEKEKELKNIQEILKQERDEKMDILHDKERISLQKNEENKKLQQENERLRKEL 1021

Query: 782  NVEDLSCH 789
            ++     +
Sbjct: 1022 SIATEKLN 1029


>gi|297712091|ref|XP_002832631.1| PREDICTED: GRIP and coiled-coil domain-containing protein 2-like,
           partial [Pongo abelii]
          Length = 220

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           ++R +A+  +   +  + +++K+K  A     +   +     ++ +E ++LQ    + +L
Sbjct: 32  VQRAKAMIDKELEAEKLQKEQKIKEHA----TTVNELEELQVQLQKEKKQLQKTMQELEL 87

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               ++    +I  +        E ++K +K ++   +K++   
Sbjct: 88  VKKKQETLQEEITSLQSSVQQYEEKNTK-IKQLLVKTKKELADS 130


>gi|291233095|ref|XP_002736489.1| PREDICTED: midline 2-like [Saccoglossus kowalevskii]
          Length = 656

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/285 (8%), Positives = 61/285 (21%), Gaps = 6/285 (2%)

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
             + D          +      K +          +               +   R    
Sbjct: 270 QSIVDKYKRTAKKNTVIHCQHCKGSTPSEATRRCYDCNECYCSECFKNAHPWGTPRANHS 329

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
             +A +     +     +       C         V     +               +  
Sbjct: 330 YCAADNTRPKTIMCTEHTEERVGWYCDACQRPTCRVCKVTNVHHGHRMYAIKVTYSALKD 389

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            L      +  +     GA     T   +      +           L           I
Sbjct: 390 KLKKHVNALQSKRDEIEGAIGKFETAVVNIEANAEMTNNCIVNGMDELRKLLDEKQASLI 449

Query: 706 MLLYIVSESSIRAGIRRIE----AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +       ++  ++R++     +       +      + +            ++GR+E
Sbjct: 450 ERVEKAKVEKLQGPVKRLQSLNAMLANTVLIEYAQEVLNEEEQACFVQSALP--LIGRLE 507

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
           ++ + +++ Q           V DLS  K   +N     +    +
Sbjct: 508 KLLKSFKQEQETIETEVDSQTVIDLSREKELVINIDFLQVPGTPA 552


>gi|225684457|gb|EEH22741.1| autophagy protein [Paracoccidioides brasiliensis Pb03]
 gi|226294110|gb|EEH49530.1| autophagy protein [Paracoccidioides brasiliensis Pb18]
          Length = 210

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 16/101 (15%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRA--RSHLMGQDEKLKSLASFLKVSQGNVV-- 757
           T E+  L        RA  RRIE + G+RA   + +  +DE+L+  A  L   Q  +V  
Sbjct: 112 TAELEKLK----KKTRADTRRIEMLVGERAQLMTRVKDRDEELRGKAKLLDNLQSELVSL 167

Query: 758 --------GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
                    R +++  E ++L      R  Q         K
Sbjct: 168 NLQFNMAEERSKKLETENKELVDRWMARMGQEAEAMNKASK 208


>gi|154249402|ref|YP_001410227.1| S-layer domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153338|gb|ABS60570.1| S-layer domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 1036

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 49/127 (38%), Gaps = 29/127 (22%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE-----------IWEEYRKLQ 771
           +EAI+ +   ++L  + +++    +    +  N+  +++            +  E + L+
Sbjct: 164 VEAISEK--YNYLQKKVDEIDKNINKFSSTVLNIEDKIKNVESSLNSSIKSLEIETKNLK 221

Query: 772 LIHAKRKLQLNVEDLSCHKIA-----------DVNFMSHIISEVD-----SKELKSVMDA 815
               K + +   +  S   +            D+  +   I  ++        LK+ +++
Sbjct: 222 SEIEKIREKNVSDTSSAQSMNEGTNTYIDYSKDIELLYKKIEYLNNQLEYMNYLKNEVNS 281

Query: 816 LQKKIQS 822
           L+ +I++
Sbjct: 282 LKDEIKN 288


>gi|310794967|gb|EFQ30428.1| RecF/RecN/SMC N terminal domain-containing protein [Glomerella
            graminicola M1.001]
          Length = 1549

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              A  +L     ++K L+   + S  +   R+  + +E  KL+    K   + +  +   
Sbjct: 1008 DSAARNLADAHRRIKELSKEHQPSASD-DKRIAALRKEIAKLEKEVEKLHDETSGVEEEI 1066

Query: 789  H----KIADVNFMSHIISEVDSKELKS 811
                 KI +V      +   +   LK 
Sbjct: 1067 KALQDKIMEVGGEKLRLQRANVDSLKE 1093


>gi|265766254|ref|ZP_06094295.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253922|gb|EEZ25387.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 945

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 72/227 (31%), Gaps = 8/227 (3%)

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             + S   + G+ +      F         S E +      +   +   P   +      
Sbjct: 518 WQINSTAPRLGNDVRSIRFSFATDAPCFTGSNEYRYRLVGYDPEWSSWDPGTVKEYANLS 577

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH--VSSTGEIMLLYIVSESSI 716
           +            Y     +    +                 V+    + LL+     S+
Sbjct: 578 SGTYTFCVRARDIYGTESEMKQFRFSLLPPFYLQWYCLILYAVAFGMLLFLLFKWRMRSL 637

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
                R+EA+ GQR +  +  ++E  +      K      +  + +  +E  + + +   
Sbjct: 638 LKEKERLEALVGQRTKQLVQQKNEIEEKSLKLEKA-----LKELGQAQDELVRQEKMATV 692

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            KL   + D   + +  +N  SH+ S +  K+L   ++++++ +   
Sbjct: 693 GKLTQGLIDRILNPLNYINNFSHLTSGL-LKDLYQNLESVKELLDED 738


>gi|145483057|ref|XP_001427551.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394633|emb|CAK60153.1| unnamed protein product [Paramecium tetraurelia]
          Length = 433

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRV--------EEIWEEYRKLQLIHAKRKLQLNVE 784
             L+ Q +K K +   LK        ++        + I +  + L+   +  K +   +
Sbjct: 168 KELVEQIKKEKEINQKLKSDLQQTKDQLQNINKEVEKRIQQNQKDLEKKISDLKKEYAED 227

Query: 785 DLSCHKI-ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
                ++  DV  +   +   D +  K + D  +K+ +
Sbjct: 228 KRKTEQLSEDVKQLKEQLKSTDQQATKKL-DQQKKQYE 264


>gi|3093478|gb|AAC38445.1| fibrinogen-binding protein [Streptococcus equi]
          Length = 534

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 24/134 (17%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-----------LIHAKRKLQ 780
            + +  Q E L+   S L+  +      +++  +E + L              + K K +
Sbjct: 152 LAAIKSQQEMLRERDSQLRNLEKEKEQELQKAKDERQALTESFNKTLSRSTKEYNKLKTE 211

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVM--DALQKKIQSGIIMLVGISKEKKASV 838
           L  E     K+     ++  +S  ++   K+      L  K+ S        +   KA  
Sbjct: 212 LAKEKEKAAKM--TKELADKLSNAEASRDKAFAVSKDLADKLSS------AEASRDKAF- 262

Query: 839 LIVVTEDLLDRFNA 852
              V++DL D+  A
Sbjct: 263 --AVSKDLADKLAA 274


>gi|37999348|sp|Q63663|GBP2_RAT RecName: Full=Interferon-induced guanylate-binding protein 2;
           AltName: Full=GTP-binding protein 2; Short=GBP-2;
           AltName: Full=Guanine nucleotide-binding protein 2;
           AltName: Full=p67
          Length = 589

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E++    + RI+A T + A   L  + EK + +       + +    V ++ E+ ++ Q
Sbjct: 481 TEAAKEIEVERIKAETAEAANRELAEKQEKFELMMQQ---KEESYQEHVRQLTEKMKEEQ 537

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
               + +  +    L   +     F+         K L+ + +  +++      +L
Sbjct: 538 KKLIEEQDNIIALKLREQE----KFLREGYENESKKLLREIENMKRRQSPGKCTIL 589


>gi|332045363|gb|EGI81556.1| Peptidase M23 [Lacinutrix algicola 5H-3-7-4]
          Length = 407

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 32/98 (32%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R+  +           + + L   A + K    N+  + E + +  ++L      +   +
Sbjct: 127 RVMFLLSSSNFKQAYKRIQYLNQYADYQKKQGENIRTKTEALQKSNQELLKKKEAKNKLI 186

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
               ++   +        +I     K+L      +++K
Sbjct: 187 AENKIAQKALEKERKEHEVIMSAIKKDLNKYASQIKEK 224


>gi|326428759|gb|EGD74329.1| hypothetical protein PTSG_12434 [Salpingoeca sp. ATCC 50818]
          Length = 853

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
            + SKEL+ V + L     + +++ +G +++    +L   TE L  +FNA+D
Sbjct: 139 GLGSKELRDVAEQLANTNPNDVVLFIGDAED--TVLLAEATE-LTRKFNALD 187


>gi|170744257|ref|YP_001772912.1| MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor
           [Methylobacterium sp. 4-46]
 gi|168198531|gb|ACA20478.1| MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor
           [Methylobacterium sp. 4-46]
          Length = 1061

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            H    + +L++    L+ +   +    EE+     + Q ++ + +      + S  ++ 
Sbjct: 647 EHAQRLEAELRTTKDRLQATIEELESTNEELKSSNEEYQSLNEELQSANEELETSKEELQ 706

Query: 793 DVNFMSHIISEVDS------KELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            VN     ++ V+        EL      L+  ++S  I  V +  + + +
Sbjct: 707 SVN---EELTTVNGELGHRVNELTRATSDLKNFLESTQIATVFLDNDLRVT 754


>gi|123976306|ref|XP_001314480.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121896882|gb|EAY02020.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2271

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 52/471 (11%), Positives = 122/471 (25%), Gaps = 26/471 (5%)

Query: 323  MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
                     E+ S             + L  E E     + +        +  L      
Sbjct: 1122 YKQSSQKKDEVISELHNENDDLSKENDDLTKEIEDLKTKISKLNEDHKKEIKQLLDQIEQ 1181

Query: 383  NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
              D+  +  D   L  +          L   +     +     +   R       S   +
Sbjct: 1182 KNDLLTQQNDYENLMKENDDLDKENEDLTKENEQLVAEKETLCQENERLKKALDDSKIFD 1241

Query: 443  KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
            +I   L++K    +             KE+ K+   K  ++L        K+I  +   +
Sbjct: 1242 EIQKELQDKIDNLE------KENDNLKKENEKIQSLKNALELAKSTFDKEKSIEDEIRKL 1295

Query: 503  EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
            E+     + ++  D+     E      +    I   +     D   + +   +     E 
Sbjct: 1296 EKEHKDIQKQIFGDKQNEEEEEDLSDENEMTKIRREVEDLKKDALIQIKVNEIQRLEHE- 1354

Query: 563  GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                 + S+ L         L         L   +  I     ++     +   +  D  
Sbjct: 1355 LSQAQDNSVPLVQFQSMADNLEQTVEENKQLKEKMKLIDNELTNKLEFENSELKIDLDNY 1414

Query: 623  HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
              +   +    S  +  N  +   L       +                 +       ++
Sbjct: 1415 SKQLDDANAKISKLEKENIKLKDKLEKEESEKSDMIIKYENLKMENAVSGDIDKIKDQLK 1474

Query: 683  YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
             ++  +        T +    E+      ++  I+                 L  ++E+L
Sbjct: 1475 DKETDIVGLEAERNTLMKKLSELENKVQENDEKIKE-------------IEDLKKENEEL 1521

Query: 743  KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            K     L+ +  +V  R   +  +   L+    K K +L + ++   K  +
Sbjct: 1522 KE---QLENNNNDVEER---LQNDNNMLKREITKLKNKLELSEVDKKKADE 1566


>gi|19424350|ref|NP_598308.1| interferon-induced guanylate-binding protein 2 [Rattus norvegicus]
 gi|207605|gb|AAA19909.1| ORF [Rattus norvegicus]
 gi|56269791|gb|AAH86991.1| Guanylate binding protein 2 [Rattus norvegicus]
 gi|149026111|gb|EDL82354.1| guanylate nucleotide binding protein 2 [Rattus norvegicus]
          Length = 591

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E++    + RI+A T + A   L  + EK + +       + +    V ++ E+ ++ Q
Sbjct: 483 TEAAKEIEVERIKAETAEAANRELAEKQEKFELMMQQ---KEESYQEHVRQLTEKMKEEQ 539

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
               + +  +    L   +     F+         K L+ + +  +++      +L
Sbjct: 540 KKLIEEQDNIIALKLREQE----KFLREGYENESKKLLREIENMKRRQSPGKCTIL 591


>gi|289192161|ref|YP_003458102.1| transcriptional regulator, MarR family [Methanocaldococcus sp.
           FS406-22]
 gi|288938611|gb|ADC69366.1| transcriptional regulator, MarR family [Methanocaldococcus sp.
           FS406-22]
          Length = 437

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 14/102 (13%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           E IT ++  + +    ++L +L   LK  +      +E++  + + L+    K    L  
Sbjct: 239 EKITKKKLITGIDNIKDELNNLKIKLKEREEE----IEKLTTKIKDLEEELNKANKNLLN 294

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDA---LQKKIQS 822
           +D        +  ++  +SE +SK LK ++D     ++KI+S
Sbjct: 295 KDEI------IGVLNERVSEYESKILK-LLDENSTYKEKIES 329


>gi|254254553|ref|ZP_04947870.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158]
 gi|124899198|gb|EAY71041.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158]
          Length = 1416

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+    E+ +RA +RR +   G  A   L   + +L      L+++        EE+   
Sbjct: 673 LVVFEEETDVRAEVRRADDANGSNAV--LTQLENELHRTKQQLQLTIEQADVSTEELKAS 730

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             +LQ I+ + +      + S  ++  VN
Sbjct: 731 NEELQAINEELRSATEELETSKEELQSVN 759


>gi|325091665|gb|EGC44975.1| condensin subunit [Ajellomyces capsulatus H88]
          Length = 1447

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGN------VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             +L     +++ L++  K S+ +      +   +  + +E  KL    A  + ++     
Sbjct: 987  KNLADAQRRVQELSAEHKPSKSDDSRSAALEKHISSLEKEIEKLHTETAGVEEEIQALQN 1046

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
               +I  V              LK  +D L + + +  +     SK +K  +
Sbjct: 1047 KIMEIGGVRLRGQKAK---VDGLKEQIDLLTEDVSNAEV---SKSKNEKLRI 1092


>gi|265751145|ref|ZP_06087208.1| phenylalanyl-tRNA synthetase, alpha subunit [Bacteroides sp.
           3_1_33FAA]
 gi|263238041|gb|EEZ23491.1| phenylalanyl-tRNA synthetase, alpha subunit [Bacteroides sp.
           3_1_33FAA]
          Length = 354

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
             LK  +  ++ ++E++ +E   LQ  +A+    L ++ LS  K   +N +      V +
Sbjct: 2   RSLKNKEETMLAKIEQLLQEIEGLQAANAEELEALRIKYLS--KKGAINELMADFRNVPA 59

Query: 807 KELKSV---MDALQKKIQSGIIML 827
           ++ K V   ++ L+ K Q  I  L
Sbjct: 60  EQKKEVGMKLNELKNKAQERIATL 83


>gi|256750745|ref|ZP_05491630.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750328|gb|EEU63347.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 192

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 34/138 (24%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           +  ++ ++  L + LK  +  +            ++  +  E  K+Q   +  K QL  +
Sbjct: 63  VQDKNTEIAKLTNELKAKEQQIADYEAKLKEKDDQINALKAELEKIQNESSTLKQQLENK 122

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             S   I      +     +D               Q+   +L  +S E    +L  + +
Sbjct: 123 QASLKDI------ATYYQNMDP--------------QNAAQILNNMSDEDVIKILSYMNK 162

Query: 845 DLLDRF----NAVDLARL 858
           D   +      A   A++
Sbjct: 163 DSASKILESLKADKAAKI 180


>gi|225554883|gb|EEH03177.1| condensin subunit [Ajellomyces capsulatus G186AR]
          Length = 1447

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGN------VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             +L     +++ L++  K S+ +      +   +  + +E  KL    A  + ++     
Sbjct: 987  KNLADAQRRVQELSAEHKPSKSDDSRSAALEKHISSLEKEIEKLHTETAGVEEEIQALQN 1046

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
               +I  V              LK  +D L + + +  +     SK +K  +
Sbjct: 1047 KIMEIGGVRLRGQKAK---VDGLKEQIDLLTEDVSNAEV---SKSKNEKLRI 1092


>gi|221091576|ref|XP_002157693.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 511

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-LQLIHAKRKLQLNVE 784
           +  ++  +HL  + E+L++    +K S    +   E++ EE R+ L++  AK     N +
Sbjct: 312 LANEKVLAHLKEEKERLQTEFEEMKYSGEAKLSNGEKMLEELREELKVSEAKLLEAKNAQ 371

Query: 785 DLSCHKIADVN-FMSHIISEVDSKE 808
            L    +ADV   ++H+  ++  K 
Sbjct: 372 QLISRSVADVKSGIAHLADKLLPKS 396


>gi|63081117|gb|AAY30317.1| M protein [Streptococcus pyogenes]
          Length = 395

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRV-------EEIWEEYRKLQLIHAKRKLQLNVED 785
             L  Q+  L+  +  L   +  +  +V       E +  E + L+   A+++  L    
Sbjct: 122 EALKNQNADLEQRSKTLSDQKEKLEKQVQEKEHNNEALKAENKALKEEAAEKEQNLEGLK 181

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            + ++    N  S    + +  +LKSV + L+  +   I
Sbjct: 182 DALNRTVSKNIESSDRYKKEIGDLKSVNEGLKDALDKTI 220


>gi|323440869|gb|EGA98577.1| putative ATP-dependent protease protein [Staphylococcus aureus O11]
          Length = 864

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 430 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 487

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 488 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 521


>gi|256810701|ref|YP_003128070.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
           AG86]
 gi|256793901|gb|ACV24570.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
           AG86]
          Length = 903

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G  R  A+           ++         LK + G ++  +    ++   ++      
Sbjct: 697 SGTFRAAAVELNSVIKATKEKESAEAGEFGELKNAVGRIISVLAPAKDKIEAVEKEIDNF 756

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
              +N EDL   +  + N ++  + ++  K LK ++D L
Sbjct: 757 LEIINKEDLKPSEKDEANKLAKYLKDILGK-LKEMIDNL 794


>gi|262359918|ref|NP_001088987.2| centrosomal protein 63kDa [Xenopus laevis]
 gi|257096262|sp|B9V5F5|CE63A_XENLA RecName: Full=Centrosomal protein of 63 kDa-A; Short=Cep63-A;
           Short=Xcep63
 gi|222139401|gb|ACM45719.1| Cep63 [Xenopus laevis]
          Length = 649

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--RKLQL 781
           EA   + + + L    ++   L+  L+  + +V   +  + +  ++LQ    +   KL+L
Sbjct: 444 EAAEHRMSLNALENLRQENCRLSELLQTQEPDVAQALVNLEQANQRLQRELLQTQEKLEL 503

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +         V+ +S  +     +EL+ + + L+
Sbjct: 504 IAQRRESEIQNAVDSISQELLNKQEQELRIMQERLK 539


>gi|190571511|ref|YP_001975869.1| hypothetical protein WPa_1130 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018913|ref|ZP_03334721.1| hypothetical protein C1A_686 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357783|emb|CAQ55238.1| Hypothetical protein WP1130 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995864|gb|EEB56504.1| hypothetical protein C1A_686 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 682

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 42/401 (10%), Positives = 108/401 (26%), Gaps = 27/401 (6%)

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              I  +  ++ ++EQ +    +       +         E   +  F+ Y        +
Sbjct: 48  WYFISPLRKDENVKEQINLKWENEFQKFEQSITAAHKKFAESLPSENFLVYTTKDNDFQI 107

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAI-VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +   K    +    L       V  + + +   +     G +          Y   G   
Sbjct: 108 RFKNKEKPIEISTLLRASDEGKVYNLSLGKDSQITATKKGSERH--------YDFTGSSS 159

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            +             +        +         G  +           +   Q      
Sbjct: 160 CEMTINWQAKDSKGNSIDCSMTVEVNSKGIKRVIGEPKFGGITSSEEALKLVEQNKEVFI 219

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
               L+   + +    V    +  TP    F     +  T +       N       +L 
Sbjct: 220 NGKTLYQTFTDM----VKSVNNQQTPAEETFTKDSPQSATPSSSGYSSLNTPSSRRSSLS 275

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + +     ++   S   +       +   +          ++      T ++  GE    
Sbjct: 276 ISSEFNGEDEIFESDTFSDEEENKQEGNELEEENTYLKKENAELKSRNTKITEEGEAEAS 335

Query: 709 YIVSESS-IRAGIRRIEAITGQRARSHLMGQDEKLKSLASF---LKVSQGNVVGRVEEIW 764
            ++ E   +   + R++    +R    L  +D+++  LA     L+ SQ +   R++++ 
Sbjct: 336 QLIEEKQDLAKEVTRLKDEL-KRKEKELAEKDKEIDRLAQKVTVLEQSQKDKNARIKDLI 394

Query: 765 EEYRKLQLIHA---------KRKLQLNVEDLSCHKIADVNF 796
            + +  +             + K + +   LS  +  + NF
Sbjct: 395 NQLKDKESEIQSTNRINAELQEKFKQSEAKLSTLEKKNTNF 435



 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 42/97 (43%), Gaps = 18/97 (18%)

Query: 734 HLMGQDEKLKS-----------LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +L  ++ +LKS            AS L   + ++   V  + +E ++ +   A++  ++ 
Sbjct: 311 YLKKENAELKSRNTKITEEGEAEASQLIEEKQDLAKEVTRLKDELKRKEKELAEKDKEI- 369

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
             D    K   V  +     + +++ +K +++ L+ K
Sbjct: 370 --DRLAQK---VTVLEQSQKDKNAR-IKDLINQLKDK 400


>gi|170768954|ref|ZP_02903407.1| protein TolA [Escherichia albertii TW07627]
 gi|170122026|gb|EDS90957.1| protein TolA [Escherichia albertii TW07627]
          Length = 439

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQ----GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
              +  Q+   K     LK+ +      +  +     E  ++L+      + Q    + +
Sbjct: 64  YKRMQNQESSAKRSEEQLKIKERQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEA 123

Query: 788 CHKIA 792
             +  
Sbjct: 124 AKQAE 128


>gi|119496747|ref|XP_001265147.1| eukaryotic translation initiation factor 3 subunit EifCa, putative
           [Neosartorya fischeri NRRL 181]
 gi|229488237|sp|A1D4A7|EIF3A_NEOFI RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 110 kDa subunit homolog; Short=eIF3
           p110; AltName: Full=Translation initiation factor eIF3,
           p110 subunit homolog
 gi|119413309|gb|EAW23250.1| eukaryotic translation initiation factor 3 subunit EifCa, putative
           [Neosartorya fischeri NRRL 181]
          Length = 1067

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RR+     + A +  + + ++ +     ++  Q     + + + +E R+ +    K    
Sbjct: 607 RRVLIEKKKEAATDALQRKQREEETRKRIRTQQLQEAEK-QRLLDEQREREKKRLKDEQD 665

Query: 777 ----RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
               ++L+  +E+L    +  ++     + ++D+  L+++
Sbjct: 666 RIRQQELKKQLEELKSG-VKGIDISEIDLEDMDANRLRAI 704


>gi|6606208|gb|AAF19112.1|AF143459_1 BdrC1 [Borrelia hermsii]
          Length = 231

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 732 RSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
             +L       L+ + + LK    ++  +++ + E    +++ + + +L+ +++DL  +K
Sbjct: 44  IEYLETTFNLKLEKVGASLKSDIKDLDNKIDTV-ENNLNIKIDNVRNELKSDIKDLD-NK 101

Query: 791 IADV-NFMSHIISEV------DSKELKSVMDALQKKIQSGI 824
           I  V N ++  I  V      D K+L + +D ++ +++S I
Sbjct: 102 IDTVENNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDI 142



 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              + K+ ++ + LK    ++  +++ +  E +        +     VE+    KI +V 
Sbjct: 107 NNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNKID--TVENNLNIKIDNVK 164

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGI 824
                  + D K+L + +D ++ +++S I
Sbjct: 165 ----NELKSDIKDLDNKIDNVRNELKSDI 189


>gi|270272466|gb|ACZ67658.1| polyprotein [Human rhinovirus C]
          Length = 2153

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 44/383 (11%), Positives = 99/383 (25%), Gaps = 45/383 (11%)

Query: 489  SSIVKAIVQQGEIVEEAVSGQKVEVVFDQT--PFYAEAGGQLGDTGCAIGDGIRLQITDV 546
             +I+ A+    ++    V G  V    D T   +Y+ +  +     C   D   +Q +  
Sbjct: 871  ETILLALTADLQVDSTNVPGPDVIPCCDCTAGCYYSRSKDRYFPVECVSHDWYEIQESGY 930

Query: 547  QKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
              K     +                L              NH A   L         S +
Sbjct: 931  YPKHIQYNLLIGEGHCEPGDCGGKLLCKHGVIGMITAGGDNHVAFTDL------RPYSSL 984

Query: 606  SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            S++   I+    +      +  T+            I  +      + + R  +  +   
Sbjct: 985  SEHQGVISDYFTQLGNAFGEGFTTNIQDHFSQITKSISDKFTSKAIKWLVRIISALTIMI 1044

Query: 666  ALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSST----GEIMLLYIVSESSIRAG 719
                        + ++             +C    +        +  L       +   G
Sbjct: 1045 RNNSDLPTILATLSLLGCSSSPWSFLKDKICSWLQIQRPASKQSDSWLRKFTECCNAAKG 1104

Query: 720  IRRIEAITGQ-------RARSHLMGQDEKLKSLASFLKVSQGNV-------VGRVEEIWE 765
            +  I    G+       +    +  + + L      + + +  V           +++  
Sbjct: 1105 LEWISIKIGKFIDWLKGKLVPAVQRKRDTLDR-CKKISLLEEQVNGFSSASSEAQQQLIV 1163

Query: 766  EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            E   L+    +       E+    KI               K+LK +   L+      + 
Sbjct: 1164 EVDTLKKGLDELAPLYASENKRVTKIQ--------------KDLKQLSAYLKNHRHEPVC 1209

Query: 826  MLV-GISKEKKASVLIVVTEDLL 847
            +L+ G     K+ V  ++   L 
Sbjct: 1210 LLLHGNPGCGKSLVTTIIARGLT 1232


>gi|298715328|emb|CBJ27956.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 169

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 11/104 (10%)

Query: 729 QRARSHLMGQDEKL---KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE- 784
           Q A   L  Q   L   + +    K  Q  ++ R+ ++    + LQ    + +L+L    
Sbjct: 34  QAALQSLQIQLGTLDITRDMTRQYKGMQEELLNRINQLEGTIQALQDELERSRLELEQAV 93

Query: 785 ----DLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQ 821
                +   K  +++ M   + ++       LK  +D ++++I+
Sbjct: 94  KEKDSIIAAKDKEISQMRVKMEDMAQEFGDMLKETLDRMRERIE 137


>gi|260946499|ref|XP_002617547.1| hypothetical protein CLUG_02991 [Clavispora lusitaniae ATCC 42720]
 gi|238849401|gb|EEQ38865.1| hypothetical protein CLUG_02991 [Clavispora lusitaniae ATCC 42720]
          Length = 1076

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 12/132 (9%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE------KLKSLASFLKVSQGN 755
             EI+      +S  ++  RR+E  +      +   Q E      +L  L   L     +
Sbjct: 216 PNEILERLEFLQSENQSLRRRLEDASSHD-LDYSSLQHENNELKTELHKLQMRLTQIPED 274

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS----EVDSKELKS 811
             GR+E + E    L+      K  L+  +     + + N  +  +     + + + L+S
Sbjct: 275 APGRLESLSENNSTLERKLESAKRDLDQVERERDNL-ETNLRAARLELQNSDAEIERLRS 333

Query: 812 VMDALQKKIQSG 823
             D  + +    
Sbjct: 334 QCDEYKSRFSDS 345


>gi|313243882|emb|CBY34761.1| unnamed protein product [Oikopleura dioica]
          Length = 2650

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 733  SHLMGQDEKLKSL----ASFLKVSQGNVVGRVEEIW--EEYRKLQLIHAKRKLQLNVEDL 786
              +   ++ L+ L       LK ++ N   +  ++   +E +  +   +K K  L VE+ 
Sbjct: 1280 EEIKKLEKDLEKLDIENKDLLKQAEENKDNKAAKLLIAKELKDREDEISKLKQALAVEEQ 1339

Query: 787  SCHKIADVNFMSHIISEV 804
            +    AD N ++ +  E+
Sbjct: 1340 NAKNAADPNKITELEDEI 1357



 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 733  SHLMGQDEKLKSL--ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
              L  ++ KLK    +      +  V   + E  EE +KL+    K  ++         +
Sbjct: 1246 EELKRENAKLKETQESEEDGAKKAFVAKELVERKEEIKKLEKDLEKLDIENKDLLKQAEE 1305

Query: 791  IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              D      +I    +KELK   D +  K++  + +
Sbjct: 1306 NKDNKAAKLLI----AKELKDREDEI-SKLKQALAV 1336



 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRKLQLI-----HAKRK 778
              + A+     QD+ L+ L   L+    ++      +EE+ +E ++L++      + K+K
Sbjct: 2111 ASELAKKSPEEQDKILEDLKKTLEAKARDIAELEQEIEELKDENKELKVEAYDAQNYKKK 2170

Query: 779  LQLNVEDLSCH 789
             +  V++    
Sbjct: 2171 FKKAVDEKHAQ 2181


>gi|308162868|gb|EFO65237.1| Axoneme-associated protein GASP-180 [Giardia lamblia P15]
          Length = 1425

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 722 RIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           RI+A+T +   A   L  ++ +LK L   L   +  V+  +  + +   +L    +  +L
Sbjct: 630 RIKALTDELHLALDSLNTKEAELKQLKDELS-QKDAVIDSLHLVDKANSELNKQISMLEL 688

Query: 780 QLNVEDLSCHKIADVNF-MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
                     ++ DV   +S +++  D + L      L++++    + L    ++ 
Sbjct: 689 DRESLREKISELEDVRDKLSTLLNSADDERL-----QLRRELDDLRVQLADNKRDD 739


>gi|302679988|ref|XP_003029676.1| hypothetical protein SCHCODRAFT_82895 [Schizophyllum commune H4-8]
 gi|300103366|gb|EFI94773.1| hypothetical protein SCHCODRAFT_82895 [Schizophyllum commune H4-8]
          Length = 1249

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA T QR    L  + ++ +     L      +  R EE+  +  +L+    + + +L  
Sbjct: 418 EAKTSQRTLQILQAKQKEFEEKKQTLSEQAETLEARKEELEGKVSELENDLNRARQELRN 477

Query: 784 EDLSCHKIADV-NFMSHIISEVDSKELKSVMDA 815
              +  KIA + +     +  V +  L++ +D 
Sbjct: 478 HQETRAKIAQLESVAKEKLENVHASLLQASVDR 510


>gi|297478644|ref|XP_002690266.1| PREDICTED: Laminin subunit alpha-2-like, partial [Bos taurus]
 gi|296484035|gb|DAA26150.1| Laminin subunit alpha-2-like [Bos taurus]
          Length = 1469

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLS 787
             A   L    +K++  A+ L       +  +E+  E     +       K   ++ D +
Sbjct: 131 DDAWDLLREATDKIRE-ANLLSAENQKNMTALEKKKEAIESGKRQTENTLKEGNDILDEA 189

Query: 788 CHKIADVNFMSHIISEVD------SKELKSVMDALQKKIQS 822
              + ++N +   + ++       SK+LK  +D L +KI+ 
Sbjct: 190 SRLVDEINSVIVYVEDIQTKLPPMSKDLKDKIDDLSQKIKD 230


>gi|296483105|gb|DAA25220.1| kinectin 1 [Bos taurus]
          Length = 1302

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 60/148 (40%), Gaps = 22/148 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSC--- 788
            L  ++ ++K L + LK  + ++  +   ++E+ +E +  +    + K Q   +  S    
Sbjct: 935  LKEKENEMKRLETMLKERESDLSSKTKLLQEVQDENKLFKSQIEELKQQNYQQASSFPPH 994

Query: 789  -HKIADVNFMSHIISEV--DSKELKSVM-------DALQKKIQSGIIMLVGISK--EKKA 836
               +  ++     I+++  +   LK  +       + L++K    +  L    K  + K 
Sbjct: 995  EELLKVISEREKEITDLKNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKLLQDKV 1054

Query: 837  SVLIVVTEDLLDRFNAVDL-ARLSAKVL 863
            +     +++      AV+L A+   K L
Sbjct: 1055 N---KTSKERQQHVEAVELEAKEVLKKL 1079


>gi|262280097|ref|ZP_06057882.1| chromosome segregation ATPase [Acinetobacter calcoaceticus RUH2202]
 gi|262260448|gb|EEY79181.1| chromosome segregation ATPase [Acinetobacter calcoaceticus RUH2202]
          Length = 1149

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 18/106 (16%)

Query: 735 LMGQDEKLKS--LASFL-----KVSQGNVVGRVEEIWEEYRK-LQLIHAKRKLQLNVEDL 786
              +DE+L+    A  L     K  + +   +++E+  E +K LQ+   + + +L     
Sbjct: 881 YQQKDEQLREQLEAKRLAWQAAKSDREHYQEQLKELNAEIKKGLQIDLTEHQQKLEKVQK 940

Query: 787 SCHKIADVNF--------MSHIISEVD--SKELKSVMDALQKKIQS 822
              KI  VN         +S    E+    ++L++ +  L+  ++S
Sbjct: 941 QFEKIGAVNLAASQEFEEVSQRFDELSHQIQDLENTVTQLKDAMKS 986


>gi|297621599|ref|YP_003709736.1| hypothetical protein wcw_1379 [Waddlia chondrophila WSU 86-1044]
 gi|297376900|gb|ADI38730.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 516

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 730 RARSHLMGQDEKLKSL---ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            AR  L    +++K +      +K  +  +    + + +  ++ ++   K +L+   +  
Sbjct: 310 EAREKLDEIQKEMKGIELGREEVKQLREEIAEAKKPLLDLLKEEEVKRKKAQLEKEEQRQ 369

Query: 787 SC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +       KI+D+N      S++++  L   ++ L+ +I S
Sbjct: 370 AAVNQVEEKISDLN---SNYSKMEADALVRAIEDLKSEIGS 407


>gi|187778649|ref|ZP_02995122.1| hypothetical protein CLOSPO_02244 [Clostridium sporogenes ATCC
           15579]
 gi|187772274|gb|EDU36076.1| hypothetical protein CLOSPO_02244 [Clostridium sporogenes ATCC
           15579]
          Length = 297

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 747 SFLKVSQGN--VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISE 803
             LKV   N  +  ++  +  E + ++  + K    ++ E+ +   K+  +        +
Sbjct: 39  RLLKVKIQNNMLAKKITNMSSENKNIKNENIKLMSNIDKENETYKEKMKHIKIAYLTFDD 98

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVG 829
             SK  + ++  L++        + G
Sbjct: 99  GPSKNTREILKILKENNVRATFFVNG 124


>gi|225470146|ref|XP_002266257.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 218

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 695 GGTHVSSTGEIML-----LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
             TH+  T  +         I         + R+    G         + EKL+   + L
Sbjct: 85  WRTHLLETSLMGFSLFLGFLIDRMHHYLQKLNRLRGNAG-----ASKEEFEKLQKERAQL 139

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           K  +      ++ + E+   L     K KL+   +D       
Sbjct: 140 KEKEEQASKEIKLLQEQISTLSQDLKKLKLEAEEKDKKVETAE 182


>gi|152031559|sp|Q9U943|APLP_LOCMI RecName: Full=Apolipophorins; Contains: RecName:
            Full=Apolipophorin-2; AltName: Full=Apolipophorin II;
            AltName: Full=apoLp-2; Contains: RecName:
            Full=Apolipophorin-1; AltName: Full=Apolipophorin I;
            AltName: Full=apoLp-1; Flags: Precursor
          Length = 3380

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 12/139 (8%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
                   ++   LA  LK    N    V     + + L+   A  K+   + +     I 
Sbjct: 2471 EAGNEITKESSRLADSLKAGLPNFRRFVNTYETQLKALKEEIANDKVLKEISENWKEVIG 2530

Query: 793  D--------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
            D        VN +   I  +  K L  + +++   ++  +  L   S ++    ++ + +
Sbjct: 2531 DAAEVVSTLVNGILVTIDAL-LKTLNELAESVLDALKKSLPAL-KDSYKQAVDAIVGIAK 2588

Query: 845  DLLDRFNAVDLARLSAKVL 863
             L      V++   +A++L
Sbjct: 2589 SLTQSL--VNILSSAAEIL 2605


>gi|146196714|emb|CAB51918.2| apolipophorin precursor [Locusta migratoria]
          Length = 3380

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 12/139 (8%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
                   ++   LA  LK    N    V     + + L+   A  K+   + +     I 
Sbjct: 2471 EAGNEITKESSRLADSLKAGLPNFRRFVNTYETQLKALKEEIANDKVLKEISENWKEVIG 2530

Query: 793  D--------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
            D        VN +   I  +  K L  + +++   ++  +  L   S ++    ++ + +
Sbjct: 2531 DAAEVVSTLVNGILVTIDAL-LKTLNELAESVLDALKKSLPAL-KDSYKQAVDAIVGIAK 2588

Query: 845  DLLDRFNAVDLARLSAKVL 863
             L      V++   +A++L
Sbjct: 2589 SLTQSL--VNILSSAAEIL 2605


>gi|123470155|ref|XP_001318285.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121901040|gb|EAY06062.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2416

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 726  ITGQRARSHLMGQDEKLKSLASFL-KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            ++   A + +   + ++  L   L + +      ++E++ +E   L+      K +    
Sbjct: 1002 VSNTEAENRIHELESEISELKKELDQNNNQQNDEKIEKLQKEIEDLKNELESSKAENEEL 1061

Query: 785  DLSCHKIADVNFMSHIISEVDS--KELKSVMD--ALQKKIQSGI 824
                 K  +++ +S     ++S  K L+   D   +  K+   I
Sbjct: 1062 QNEFEK--EIDQISQEKQNLESQIKYLQEKGDKSEIIDKLNQTI 1103



 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 734  HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             L   + KL S    L  +   +   +E    E  KL     +    L  ++    +IA+
Sbjct: 1761 DLSDIENKLNSGKELLNHTIDELTKSIESKSNENSKLMSAIDQLNKDLENKNKITEEIAN 1820

Query: 794  VNFMSHIISEVDSK--ELKSVMDALQKKIQSGII 825
             N       E +SK  +L  V++ L+K+++  +I
Sbjct: 1821 KN------EENESKLLDLNKVVEELKKQLEHVLI 1848


>gi|47205359|emb|CAF96150.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1343

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I  E+ ++    R+E    +   + L  +  KL+   S LK    ++   + ++ +E +
Sbjct: 859 KIQLEAKLKETTERLE--DEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKLTKEKK 916

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNF-MSHIISEVDS-----KELKSVMDALQKKIQS 822
            LQ  H +    L  E+   + +      +   + +++      K+L+  ++  ++K++ 
Sbjct: 917 ALQESHQQTLDDLQAEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEG 976

Query: 823 GI 824
            +
Sbjct: 977 DL 978


>gi|326481067|gb|EGE05077.1| hypothetical protein TEQG_04095 [Trichophyton equinum CBS 127.97]
          Length = 1165

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            +L  + E L+     L         +V+E+  E   L+   A+ + ++    LS  + +
Sbjct: 613 ENLREEIETLQDEVVSLGQDHVEAKDKVKELLAEKSALEKRAAEFEKEIASLRLSSTQSS 672

Query: 793 DV----NFMSHIISEVDSKEL 809
           D       +S    ++ SK L
Sbjct: 673 DAEKAHKDLSVEFEDLKSKSL 693


>gi|326470230|gb|EGD94239.1| viral A-type inclusion protein repeat protein [Trichophyton
           tonsurans CBS 112818]
          Length = 1165

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            +L  + E L+     L         +V+E+  E   L+   A+ + ++    LS  + +
Sbjct: 613 ENLREEIETLQDEVVSLGQDHVEAKDKVKELLAEKSALEKRAAEFEKEIASLRLSSTQSS 672

Query: 793 DV----NFMSHIISEVDSKEL 809
           D       +S    ++ SK L
Sbjct: 673 DAEKAHKDLSVEFEDLKSKSL 693


>gi|312890774|ref|ZP_07750304.1| conserved hypothetical protein [Mucilaginibacter paludis DSM 18603]
 gi|311296737|gb|EFQ73876.1| conserved hypothetical protein [Mucilaginibacter paludis DSM 18603]
          Length = 1107

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 736 MGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHKI 791
               E LK+L   L+ +Q + V   V ++  + + L+    +      QL +E      I
Sbjct: 608 EKTRELLKNLQQMLEQNQKDPVQDEVSKMQTDNKSLKKELDRMLELYKQLEIEQKLKENI 667

Query: 792 ADVNFMS---HIISE------VDSKELKSVMDALQKKIQS 822
             +N ++     +++       D K L+   + ++K  + 
Sbjct: 668 DQLNKLADKQQKLADESRKGNADQKSLQKQQNDIKKDFKD 707


>gi|295401627|ref|ZP_06811595.1| transcriptional regulator, MerR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110861|ref|YP_003989177.1| MerR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294976394|gb|EFG52004.1| transcriptional regulator, MerR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215962|gb|ADP74566.1| transcriptional regulator, MerR family [Geobacillus sp. Y4.1MC1]
          Length = 149

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 730 RARSHLMGQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQ 780
           R  + L  Q   L+ +  +L+      V+   +V ++E + E+ + +Q    + K    Q
Sbjct: 56  RLINALKKQHLTLEEIKEWLQIIKNQPVAVDEIVDKIEHLQEQMKHIQEEVLELKPLLKQ 115

Query: 781 LNVEDLS 787
           LN + + 
Sbjct: 116 LNEQQIK 122


>gi|254167742|ref|ZP_04874592.1| SMC proteins Flexible Hinge Domain [Aciduliprofundum boonei T469]
 gi|197623270|gb|EDY35835.1| SMC proteins Flexible Hinge Domain [Aciduliprofundum boonei T469]
          Length = 1178

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              +  Q E+L+      +  + +V   +E+I  +   ++   A  + ++N         
Sbjct: 744 LKDIKKQIEELEKEKRNYEELRESVRNEIEKIKSKIEDMEKEDANLRNRMN--------- 794

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
              N +   +S  + KEL++++D+L+  +Q+
Sbjct: 795 ---NLIPEKLSN-EIKELRNMVDSLRSNLQN 821


>gi|156121057|ref|NP_001095675.1| kinectin [Bos taurus]
 gi|154426114|gb|AAI51336.1| KTN1 protein [Bos taurus]
          Length = 1302

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 60/148 (40%), Gaps = 22/148 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSC--- 788
            L  ++ ++K L + LK  + ++  +   ++E+ +E +  +    + K Q   +  S    
Sbjct: 935  LKEKENEMKRLETMLKERESDLSSKTKLLQEVQDENKLFKSQIEELKQQNYQQASSFPPH 994

Query: 789  -HKIADVNFMSHIISEV--DSKELKSVM-------DALQKKIQSGIIMLVGISK--EKKA 836
               +  ++     I+++  +   LK  +       + L++K    +  L    K  + K 
Sbjct: 995  EELLKVISEREKEITDLKNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKLLQDKV 1054

Query: 837  SVLIVVTEDLLDRFNAVDL-ARLSAKVL 863
            +     +++      AV+L A+   K L
Sbjct: 1055 N---KTSKERQQHVEAVELEAKEVLKKL 1079


>gi|63101852|gb|AAH95268.1| LOC553441 protein [Danio rerio]
          Length = 405

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR----KLQLNVE 784
            RA         +L  L    K        ++E +  E RKL+   A+     K QL + 
Sbjct: 312 NRALEEAEKTKTQLNKLKQSTKDLSSQEHQKIEALQAENRKLERQKAELIVGFKKQLKLI 371

Query: 785 DLSCHK 790
           D+   +
Sbjct: 372 DILKRQ 377


>gi|298675092|ref|YP_003726842.1| signal transduction histidine kinase [Methanohalobium evestigatum
           Z-7303]
 gi|298288080|gb|ADI74046.1| signal transduction histidine kinase [Methanohalobium evestigatum
           Z-7303]
          Length = 734

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 55/542 (10%), Positives = 127/542 (23%), Gaps = 60/542 (11%)

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            + +   D             R   + +   +RLL  T+   +     +   + SA    
Sbjct: 59  VADYFFKDNKKIFKIKEKIHTREWFKNSKGVSRLLSITKTPKLDSCNNVEYIICSAEDIT 118

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            + +   ++  +  +E F +     + ++     +                   G   + 
Sbjct: 119 EKNQSEKQK--KKSEELFREITKNMVEMICLTDKNGNFVYAGP-----TYKSNLGYNPEH 171

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW----------FSLKE 450
           +        +   D+                          +  +          +    
Sbjct: 172 LIGKSVFNFVHPDDLDRIKSEFNSLLETLIPRKSEYRCLHADGHYLWLETYGNFIYDDIG 231

Query: 451 KYGATQFIGYD-----LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
                 F G D      L        +             N   S          +V+  
Sbjct: 232 NIKKIVFTGRDITKRKQLEQKLKNTYEIINNSLVVAFLWKNDEESGWPVEYVSNNVVD-- 289

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           + G  V+   D    YA+      D      +         + K +          R I 
Sbjct: 290 IFGYYVDDFNDDKLSYADI-IHPDDIERVKSEVETYSENPDRFKFQHKPYRIITKNRNI- 347

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +             I H    +L      +    + +N   +           S 
Sbjct: 348 ---RWVDDRTTIIRNDCGEITHYQGVILDITDRKMAEEKLMENKKMLDDTFESIQDGISV 404

Query: 626 PITSAELKSIEDNVNDIIAQNLP----VVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
             T   +      + +    N P       ++ +  D            K       +  
Sbjct: 405 IDTDFNVIRANSKMGEWYKVNTPLEGKKCYQVYHNNDKPCDYCPTSRALKTGKTETNIVP 464

Query: 682 EYEDGGVHSSALCGGTHVSS-TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
              +  +    +         TGEI+ +              +E +   R  +     + 
Sbjct: 465 GLPNSKIEWLEIYSYPMNDRYTGEILGV--------------VEFV---RDITEKTKTER 507

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---------LIHAKRKLQLNVEDLSCHKI 791
           +L+  ++ LK     +  RV++  EE +  +          I    ++  ++ +L   K 
Sbjct: 508 QLEKYSTELKQINEELENRVQKQTEEIKNAERLRVLELHHRIKNNLQVISSLLNLQSEKF 567

Query: 792 AD 793
            D
Sbjct: 568 ND 569


>gi|289597054|ref|YP_003483750.1| chromosome segregation protein SMC [Aciduliprofundum boonei T469]
 gi|289534841|gb|ADD09188.1| chromosome segregation protein SMC [Aciduliprofundum boonei T469]
          Length = 1184

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              +  Q E+L+      +  + +V   +E+I  +   ++   A  + ++N         
Sbjct: 750 LKDIKKQIEELEKEKRNYEELRESVRNEIEKIKSKIEDMEKEDANLRNRMN--------- 800

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
              N +   +S  + KEL++++D+L+  +Q+
Sbjct: 801 ---NLIPEKLSN-EIKELRNMVDSLRSNLQN 827


>gi|256751394|ref|ZP_05492273.1| Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
           methyltransferase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749776|gb|EEU62801.1| Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
           methyltransferase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 283

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 18/132 (13%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             ++E+L  ++   +     +      + E  R+L+   A+RK+ +  E    H+     
Sbjct: 143 KEREERLNRISKEERTII--LYEAPHRLKETLRELKSYVAERKIVIARELTKIHE----E 196

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK---EKKASVLIVVTEDLLDRFNA 852
           F+   I EV    L  + D ++ +I   ++++ G  K   E+K  +LI   + L +  + 
Sbjct: 197 FIRGTIDEV----LTKLGDEIKGEI---VLIIEGAQKQQVEEKPEILIQ--KYLEEGMDK 247

Query: 853 VDLARLSAKVLG 864
            +  +  AK LG
Sbjct: 248 KEAIKRVAKELG 259


>gi|170764262|ref|ZP_02639686.2| exonuclease SbcC [Clostridium perfringens CPE str. F4969]
 gi|170714455|gb|EDT26637.1| exonuclease SbcC [Clostridium perfringens CPE str. F4969]
          Length = 1172

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  +   LK       + + N+   +E++ EE   L+ I  K       E + C KI
Sbjct: 651 LKFLEEEFNTLKDKIEEFNLKKENLEKDLEKLKEEKNNLENIFNK------AEVILCEKI 704

Query: 792 ADVNFMSHIISEVDSKELK---SVMDALQKKIQ 821
                ++  I E+D KELK   S +++++ +++
Sbjct: 705 VREKEIASKIKELD-KELKLKNSELNSIKNELK 736


>gi|28190710|gb|AAO33172.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 455

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G R        +E  + L S L + +   +     V++  E  ++L+     +K QL  +
Sbjct: 57  GLRTLLEQKKAEEIERELKSALGLEKLEKLAELELVKQRLESMKELERELEAKKSQLEED 116

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSV 812
            L     A V        E D  +L+ +
Sbjct: 117 GLRVELEALVRL------EADVAQLREL 138


>gi|167038524|ref|YP_001666102.1| uroporphyrin-III C/tetrapyrrole methyltransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167038734|ref|YP_001661719.1| uroporphyrin-III C/tetrapyrrole methyltransferase
           [Thermoanaerobacter sp. X514]
 gi|300913681|ref|ZP_07130998.1| Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
           methyltransferase [Thermoanaerobacter sp. X561]
 gi|307723304|ref|YP_003903055.1| Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
           methyltransferase [Thermoanaerobacter sp. X513]
 gi|320116920|ref|YP_004187079.1| Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
           methyltransferase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166852974|gb|ABY91383.1| Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
           methyltransferase [Thermoanaerobacter sp. X514]
 gi|166857358|gb|ABY95766.1| Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
           methyltransferase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|300890366|gb|EFK85511.1| Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
           methyltransferase [Thermoanaerobacter sp. X561]
 gi|307580365|gb|ADN53764.1| Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
           methyltransferase [Thermoanaerobacter sp. X513]
 gi|319930011|gb|ADV80696.1| Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)
           methyltransferase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 273

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 18/132 (13%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             ++E+L  ++   +     +      + E  R+L+   A+RK+ +  E    H+     
Sbjct: 143 KEREERLNRISKEERTII--LYEAPHRLKETLRELKSYVAERKIVIARELTKIHE----E 196

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK---EKKASVLIVVTEDLLDRFNA 852
           F+   I EV    L  + D ++ +I   ++++ G  K   E+K  +LI   + L +  + 
Sbjct: 197 FIRGTIDEV----LTKLGDEIKGEI---VLIIEGAQKQQVEEKPEILIQ--KYLEEGMDK 247

Query: 853 VDLARLSAKVLG 864
            +  +  AK LG
Sbjct: 248 KEAIKRVAKELG 259


>gi|332194498|gb|AEE32619.1| transcription factor bHLH115 [Arabidopsis thaliana]
          Length = 292

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A   +    ++    A  LK    ++  +++E+ +E  +L+    K K++    D   
Sbjct: 174 NDAIRMVNQARDE----AQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQL 229

Query: 789 HKIA 792
             I 
Sbjct: 230 KAIK 233


>gi|328785712|ref|XP_001121093.2| PREDICTED: hypothetical protein LOC725217 [Apis mellifera]
          Length = 747

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 46/130 (35%), Gaps = 10/130 (7%)

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
               EI         SI      I        ++     +E L  ++  L  +   +   
Sbjct: 259 KKVAEIWQETKKDLQSIGKNAEDIINKITDSIKNLKNETNELLHKVSEALNENIEEIKQN 318

Query: 760 VEEIWEEYRKL------QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
           + +I  E +++      ++  A +K +  +ED    ++ +   +  +I +++ K L  + 
Sbjct: 319 ITKITNEVKEIVNNTVFEIKEAAKKFRQEIEDD-VEEVKEK--VIEVIDDLNEK-LSQIA 374

Query: 814 DALQKKIQSG 823
           +     ++  
Sbjct: 375 NQTANTLKET 384


>gi|322778785|gb|EFZ09201.1| hypothetical protein SINV_05270 [Solenopsis invicta]
          Length = 3271

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 25/159 (15%)

Query: 750  KVSQGNVVGRVEEIWEEYRK---LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            K +  +    V+E  +E +K   L+   AK K   +++DL   K      +S +   VD 
Sbjct: 1259 KHAVEDAADDVKEFMDETKKEAALEEERAKEKAAESLKDLKDKK---DTVVSEVEQAVD- 1314

Query: 807  KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN----AVDLARLSAKV 862
                  +D  +      +       K+KK  V+  V++D     +    A +      K 
Sbjct: 1315 ----KTVDKAKDAKDKTV----STIKDKKDKVIEKVSKDAQKVADVTKAAGEKVATETKT 1366

Query: 863  LGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS---FLKK 898
            +G         +AQ+   +    + A+  +      +K+
Sbjct: 1367 VGEKIEETAKDVAQA-AKDTK--EAAVKEMKEDTKLVKE 1402



 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 25/159 (15%)

Query: 750 KVSQGNVVGRVEEIWEEYRK---LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
           K +       V+E  +E +K   L+   AK KL   ++DL   +         ++SEVD 
Sbjct: 333 KHAVEGAADDVKEFVDETKKEAALEEERAKEKLAAGLKDLKDKR-------DTVVSEVD- 384

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN----AVDLARLSAKV 862
           + +   +D  +      +       K+KK  V+  +++D     +    A +      K 
Sbjct: 385 EAVDKAVDKAKDAKDKTV----STIKDKKDKVVEEISKDAQKVADATKAAGERVATETKK 440

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS---FLKK 898
           +G         +AQ    +    D A+  V      +K+
Sbjct: 441 IGDKIEETAADVAQ-SAKDTK--DAAVKEVKEDTKLVKE 476



 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 26/149 (17%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS-----LASFLKVSQ--- 753
              E+       +  +  G+  +    G  A+     + +K+K      L+   K ++   
Sbjct: 2508 VKEVQDDTKKVKEKLATGVETVTDGAG-AAKDKATKEAKKVKEKGSGFLSGLFKGTKHAV 2566

Query: 754  GNVVGRVEEIWEEYRK---LQLIHAKRKLQLNVEDLSCHK--------------IADVNF 796
             +V   V+E+ +E +K   L+  HAK K    ++DL   K              +ADV  
Sbjct: 2567 DDVTDDVKEVLDETKKEALLEQEHAKEKAAATLKDLKDKKDVAVSEAQEIIDKTVADVKD 2626

Query: 797  MSHIISEVDSKELKSVMDALQKKIQSGII 825
                I++  SK+ + + DA +   +  +I
Sbjct: 2627 KKDKITDDISKDAQKIADATKAAGEKVVI 2655


>gi|301766242|ref|XP_002918541.1| PREDICTED: coiled-coil domain-containing protein C6orf204-like
           [Ailuropoda melanoleuca]
          Length = 810

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 714 SSIRAGIRRIE----AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
              +   RRIE     +        +  Q  +L+ L    K  Q  ++   +++ E  ++
Sbjct: 504 EQNKEKQRRIETLEKYLADLPTLDDVQSQSLQLQVLEEKNKNLQETLLDMEKKLEEIKKQ 563

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNF-MSHIISE------VDSKELKSVMDALQKKIQS 822
            Q   A+   Q   E      +  +   +   + +      +D+K+L++  D L+K+ ++
Sbjct: 564 CQEKEAQLICQKKKEKELVTTVQSLQQKVERCLEDGIRLPMLDAKQLQNENDNLRKQNEN 623

Query: 823 G 823
            
Sbjct: 624 A 624


>gi|124025855|ref|YP_001014971.1| two-component sensor histidine kinase, phosphate sensing
           [Prochlorococcus marinus str. NATL1A]
 gi|112818646|gb|ABI23446.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           NATL1A]
 gi|123960923|gb|ABM75706.1| two-component sensor histidine kinase, phosphate sensing
           [Prochlorococcus marinus str. NATL1A]
          Length = 377

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 19/112 (16%)

Query: 726 ITGQRARSHLMG-QDEKLKSLASFLKVSQGNVV---GRVEEIWEE-----YRKLQLIHAK 776
           +T +R+  +    Q+  L   A  LK     ++    R+E++ ++      ++L+    +
Sbjct: 138 LTNKRSLDYQRQLQERMLGDAAHELKTPLTALMLLGDRLEDLVKKKDRPLIKRLRKEILR 197

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--------LKSVMDALQKKI 820
            KL +N        +   +    +   ++ +E        LK + D  +KK+
Sbjct: 198 LKLMVNDLLELSRLVNSSSVQDELTKTINMEEIVLSSWNTLKPLAD--KKKL 247


>gi|109084629|ref|XP_001092252.1| PREDICTED: thyroid receptor-interacting protein 11 [Macaca mulatta]
          Length = 1940

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  Q  ++ ++ S LK    +   RV ++ ++   +      +K +L   +++   + 
Sbjct: 517 DQLSKQQNEVDNIISKLKQDLNDEKNRVHQLEDDKMDITKELDVQKEKLLQSEVA---LN 573

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           D++     + +     +++++D L K  +S +
Sbjct: 574 DLHLTKQKLEDK----VENLVDQLNKSQESNV 601



 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 23/115 (20%)

Query: 731  ARSHLMGQDEKL--------KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
               H   +++ +        K L +  K    N+ G+V  + E   +             
Sbjct: 1640 VLEHFQQEEKAMYSAELEKQKQLIAEWKKKAENLEGKVISLQERLDEANAALDSASRLTE 1699

Query: 783  VEDLSCHKIADVNFMSHIISEVDSKELK-SVMDALQKKIQSGIIMLVGISKEKKA 836
              D+   +I ++             EL+  ++D +QKK+ +     +  S E K 
Sbjct: 1700 QLDVKEEQIEELK---------KQNELRQEMLDDVQKKLMN-----LANSSEGKV 1740


>gi|28190712|gb|AAO33173.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 454

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 52/138 (37%), Gaps = 38/138 (27%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQ 780
           E + G+RA   L      LK L    K+   ++  ++E + E  ++++ I+ +    KL+
Sbjct: 267 ELVPGKRA-QTLGEMKATLKELEKIRKL--VDLEKKLETMGELKKEIEKINEEGELLKLE 323

Query: 781 LNVEDLSCHKI-----------------------ADVNFMSH---IISEVDSKE------ 808
             +++ +  +I                        +V  +      ++ ++         
Sbjct: 324 AKIQEEAKAEITTLKSAERYGTLKENLKELEKKLGEVKSLGALKWQVAGIEPGTGSQGGK 383

Query: 809 LKSVMDALQKKIQSGIIM 826
           ++ + D L+ K+   + +
Sbjct: 384 IQKLADKLKNKLGELVAI 401


>gi|15223710|ref|NP_175518.1| basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana]
 gi|75308806|sp|Q9C682|BH115_ARATH RecName: Full=Transcription factor bHLH115; AltName: Full=Basic
           helix-loop-helix protein 115; Short=AtbHLH115;
           Short=bHLH 115; AltName: Full=Transcription factor EN
           134; AltName: Full=bHLH transcription factor bHLH115
 gi|12320783|gb|AAG50538.1|AC079828_9 bHLH transcription factor, putative [Arabidopsis thaliana]
 gi|20127115|gb|AAM10965.1|AF488632_1 putative bHLH transcription factor [Arabidopsis thaliana]
 gi|21553747|gb|AAM62840.1| bHLH transcription factor, putative [Arabidopsis thaliana]
 gi|27311655|gb|AAO00793.1| bHLH transcription factor, putative [Arabidopsis thaliana]
 gi|30023696|gb|AAP13381.1| At1g51070 [Arabidopsis thaliana]
 gi|332194497|gb|AEE32618.1| transcription factor bHLH115 [Arabidopsis thaliana]
          Length = 226

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A   +    ++    A  LK    ++  +++E+ +E  +L+    K K++    D   
Sbjct: 108 NDAIRMVNQARDE----AQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQL 163

Query: 789 HKIA 792
             I 
Sbjct: 164 KAIK 167


>gi|321469558|gb|EFX80538.1| hypothetical protein DAPPUDRAFT_224701 [Daphnia pulex]
          Length = 1070

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 38/91 (41%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G+ A   +  +D +L  +   LK  + +   R  E  +E +  Q    + KL L+    +
Sbjct: 669 GKDAEEMIQEKDRQLAVVQEELKAIKFDQATRQLEKEKENQAYQQQEEQLKLALSQLAEN 728

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
              I  +      ++  + +E +S+ +  ++
Sbjct: 729 GQLIGSLQLQLSTLTGRNQEERQSLDNQFRQ 759


>gi|330924548|ref|XP_003300677.1| hypothetical protein PTT_12005 [Pyrenophora teres f. teres 0-1]
 gi|311325052|gb|EFQ91227.1| hypothetical protein PTT_12005 [Pyrenophora teres f. teres 0-1]
          Length = 4326

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/192 (9%), Positives = 56/192 (29%), Gaps = 13/192 (6%)

Query: 606  SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV-------TRIMNRED 658
                  +    + F +   +   S++  +     N  +                    + 
Sbjct: 3034 WFTEQIVKNLHVVFTMNPPEEGLSSKAATSPALFNRCVLNWFGDWSDQALYQVSSELTQS 3093

Query: 659  AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                 A  +         R +S+         +A+    H   +    L    +      
Sbjct: 3094 VDLDRANYVAPDSIPVAYRGLSLPPSHRESVVNAMVAVHHSLRSKNAKLQKTQNRKMYLT 3153

Query: 719  GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                ++ +   +       + E L+     L V     + ++ E +++ ++L+   A+++
Sbjct: 3154 PRHFLDFVA--QYVKLYNEKREDLEEQQRHLNVG----LEKLRETFDKVKELRASLAEKQ 3207

Query: 779  LQLNVEDLSCHK 790
             QL  +D   ++
Sbjct: 3208 TQLTKKDAEANE 3219


>gi|302380809|ref|ZP_07269273.1| copper amine oxidase N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311409|gb|EFK93426.1| copper amine oxidase N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 527

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/84 (10%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--------LNVEDLS 787
               +  K +      +   ++  + ++ +E ++LQ  +AK K             ++ +
Sbjct: 103 NKVAQLNKEIEELKNSNNDELIAEITQLKDELKRLQDENAKLKEDYSSTKWELEAEKEKT 162

Query: 788 CHKIADVNFMSHIISEVDSKELKS 811
                 +  M   +  ++ +  K 
Sbjct: 163 DKNENKIKEMQEKLESLEGELAKK 186


>gi|294155353|ref|YP_003559737.1| chromosomal segregation and condensation complex, SMC protein
           [Mycoplasma crocodyli MP145]
 gi|291600153|gb|ADE19649.1| chromosomal segregation and condensation complex, SMC protein
           [Mycoplasma crocodyli MP145]
          Length = 982

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            S+   ++E LK+ ++        +   + E+  +         K KL+  ++ L   K 
Sbjct: 342 ISYFKDEEEILKNKSNHYSKEVNELNENINELTIQIND--KKTKKVKLETKLQILEDQKE 399

Query: 792 ADVNFMSHIISEVDSKELKS----VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
              N      + V++K L      ++  L K     +  +  +       +++   ED  
Sbjct: 400 NKTNLFKGTKTIVENKSLFKGYHGIVADLIKVNPEYVTAIETVLSNATQHIVV---EDSE 456

Query: 848 DRFNAVDLAR 857
               AV+  +
Sbjct: 457 VAVKAVNFLK 466


>gi|282916226|ref|ZP_06323988.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           D139]
 gi|283770042|ref|ZP_06342934.1| chaperone clpB [Staphylococcus aureus subsp. aureus H19]
 gi|282319666|gb|EFB50014.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           D139]
 gi|283460189|gb|EFC07279.1| chaperone clpB [Staphylococcus aureus subsp. aureus H19]
          Length = 869

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|189194253|ref|XP_001933465.1| dynein heavy chain [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187979029|gb|EDU45655.1| dynein heavy chain [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 4325

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/192 (9%), Positives = 56/192 (29%), Gaps = 13/192 (6%)

Query: 606  SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV-------TRIMNRED 658
                  +    + F +   +   S++  +     N  +                    + 
Sbjct: 3033 WFTEQIVKNLHVVFTMNPPEEGLSSKAATSPALFNRCVLNWFGDWSDQALYQVSSELTQS 3092

Query: 659  AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                 A  +         R +S+         +A+    H   +    L    +      
Sbjct: 3093 VDLDRANYVAPDSIPVAYRGLSLPPSHRESVVNAMVAVHHSLRSKNAKLQKTQNRKMYLT 3152

Query: 719  GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                ++ +   +       + E L+     L V     + ++ E +++ ++L+   A+++
Sbjct: 3153 PRHFLDFVA--QYVKLYNEKREDLEEQQRHLNVG----LEKLRETFDKVKELRASLAEKQ 3206

Query: 779  LQLNVEDLSCHK 790
             QL  +D   ++
Sbjct: 3207 TQLTKKDAEANE 3218


>gi|126695406|ref|YP_001090292.1| SMC ATPase superfamily chromosome segregation protein
           [Prochlorococcus marinus str. MIT 9301]
 gi|126542449|gb|ABO16691.1| putative chromosome segregation protein, SMC ATPase superfamily
           [Prochlorococcus marinus str. MIT 9301]
          Length = 1196

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++A+ +      KL+ +    KV    +  +  +  E   K +    K K+  N +  S 
Sbjct: 233 EKAKRY-KELKAKLQQIMELEKVL---IFEKQVKHVESIEKKESEIEKNKILFNKQKASI 288

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               +++ +           LK ++D L++K +  +I
Sbjct: 289 S--NEISVLE--------DALKILVDELKEKGEDTLI 315


>gi|123449469|ref|XP_001313453.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121895337|gb|EAY00524.1| hypothetical protein TVAG_350200 [Trichomonas vaginalis G3]
          Length = 412

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-VEDLSCHKIADV 794
              +  + SL    K    +   R+  +  E + L   + K K Q+   +  +  KI D+
Sbjct: 65  QKLENDIYSLEQTNKGIVISANERINLLNNEVKNLMNENNKLKDQIKFYQTDNQQKIQDI 124

Query: 795 NFMSHIISEVDSKELKSVMDALQK 818
             +   + E DS  ++ + + ++ 
Sbjct: 125 KTLEIKLDEKDS-TIRILSEQIRS 147


>gi|312877851|ref|ZP_07737798.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311795355|gb|EFR11737.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 270

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-- 779
           RI +  G + +   + + E +K      K+     V + + + ++ R+ +   +  K   
Sbjct: 67  RIISYVGGKVKEIFVKEGEYVKKGEVLFKIDDEEYVKKRDLLKQQLREYEKKVSDLKELR 126

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +   +D S     +V ++ ++    +  +LK   + 
Sbjct: 127 KSIEKDESLRNKNNVYYLRYLSYSYEVNKLKKAAEE 162


>gi|301789887|ref|XP_002930353.1| PREDICTED: protein QN1 homolog [Ailuropoda melanoleuca]
          Length = 1440

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 26/144 (18%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
             +TGE +    + E + +  I R+     Q+         E L   A  LK +      
Sbjct: 864 AHATGEKLYEIKILEETHKQEISRL-----QKRLQWYAENQELLDKDAVRLKEANEE--- 915

Query: 759 RVEEIWEEYRKLQLIHAK----RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
            +E++  E +KL+         +K++L  +     KI D+      +  +          
Sbjct: 916 -IEKLRLEVKKLKAESGNPSIPQKIRLKEKAADAKKIQDLERQVKEMEGI---------- 964

Query: 815 ALQKKIQSG--IIMLVGISKEKKA 836
            L+++  +    ++L   +     
Sbjct: 965 -LKRRHPNSLPALILAASAAGDTV 987


>gi|258423484|ref|ZP_05686374.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A9635]
 gi|257846185|gb|EEV70209.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A9635]
          Length = 869

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|257425025|ref|ZP_05601452.1| chaperone protein clpB [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257272595|gb|EEV04718.1| chaperone protein clpB [Staphylococcus aureus subsp. aureus
           55/2053]
          Length = 869

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I++++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTITQLE-KELRELEDNFQDEQGED 526


>gi|194225031|ref|XP_001914919.1| PREDICTED: kinectin 1 (kinesin receptor) [Equus caballus]
          Length = 1357

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 22/148 (14%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  ++ ++K + + LK  + ++  +   ++EI +E +  +    + K Q   +  S    
Sbjct: 935  LKEKENEMKRVETMLKERESDLSSKTKLLQEIQDENKLFKSQIEQLKQQNYQQASSFPPH 994

Query: 792  AD-VNFMSHIISEVDS--KELKSVMD----------ALQKKIQSGIIMLVGISK--EKKA 836
             + +  +S    E+    KEL S+ D           L++K    +  L    K  + K 
Sbjct: 995  EELLKVISEREKEITGLQKELASLTDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKV 1054

Query: 837  SVLIVVTEDLLDRFNAVDL-ARLSAKVL 863
            +     +++      AV+L A+   K L
Sbjct: 1055 N---KTSKERQQHVEAVELEAKEVLKKL 1079


>gi|18309198|ref|NP_561132.1| exonuclease SbcC [Clostridium perfringens str. 13]
 gi|18143873|dbj|BAB79922.1| probable exonuclease [Clostridium perfringens str. 13]
          Length = 1175

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  +   LK       + + N+   +E++ EE   L+ I  K       E + C KI
Sbjct: 654 LKFLEEEFNTLKDKIEEFNLKKENLEKDLEKLKEEKNNLENIFNK------AEVILCEKI 707

Query: 792 ADVNFMSHIISEVDSKELK---SVMDALQKKIQ 821
                ++  I E+D KELK   S +++++ +++
Sbjct: 708 VREKEIASKIKELD-KELKLKNSELNSIKNELK 739


>gi|326429536|gb|EGD75106.1| lipoprotein [Salpingoeca sp. ATCC 50818]
          Length = 1267

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 12/111 (10%)

Query: 729  QRARSHLMGQDEKLKSLASF-----------LKVSQGNVVGRVEEIWEEYRKLQLIHA-K 776
            + A S L  Q + LK   S            LK  +   VG ++   +  +K +      
Sbjct: 987  EAAVSALQQQVDALKKTQSEGESALQAQLDALKKEKEEAVGALQAQLDALKKEEEEAVGA 1046

Query: 777  RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             + Q +       +  +    +    E     L+  +D L+K+ +  +  L
Sbjct: 1047 LRAQRDALKKEKEEAQERVATAQKEKEEAVSALQQQVDVLKKEKEEAVGAL 1097


>gi|323443840|gb|EGB01452.1| putative ATP-dependent protease protein [Staphylococcus aureus O46]
          Length = 869

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|316971212|gb|EFV55023.1| putative myosin head [Trichinella spiralis]
          Length = 1926

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 45/415 (10%), Positives = 118/415 (28%), Gaps = 36/415 (8%)

Query: 403  DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS---GTTEKIWFSLKEKYGATQFIG 459
            +      LA +        +  +   A        +    + +       +     + + 
Sbjct: 1133 NKKREAELAKLRRDLEEANMNHEGQLASLRKKHNDAVAEMSDQLDQVQKAKAKSDKEKVA 1192

Query: 460  YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            Y           D++   ++     +  +   +  +        +A + ++   + D T 
Sbjct: 1193 YQRELEDLHAAMDQENKAKQDADRFSKQLELQMAEL--------QAKNDEQTRQLHDYTN 1244

Query: 520  FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
                   +  D    + D      +  + K++               T     L    +N
Sbjct: 1245 MKNRINSENADLMRQLEDAESQLNSLNRLKSQYQTQLEEAKRTADEETRERHNLAAQLKN 1304

Query: 580  RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
                + +            T +  H+S+  + I     +F+      +   E        
Sbjct: 1305 MEHENQSLREQLEEEAESKTEMQRHISKLNAEIQQWKAKFESEGLARVDEIEE------- 1357

Query: 640  NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
                 + L    + M      A+G  A L     +++R   +   D              
Sbjct: 1358 ---AKRKLTQKVQEMQEAFEAANGKIASL-----EKIRHKLLGEIDDAQVDVERAN---- 1405

Query: 700  SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +   ++       +  +    ++ + ++ +        ++  L +    LK SQ  ++ +
Sbjct: 1406 NYAAQLEKKQKGFDKIVDEWKKKCDDLSSE--LDASQRENRHLSTECFKLKNSQDELIEQ 1463

Query: 760  VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
            +E +  E + L         QL     S H++  V        E++ +EL+  +D
Sbjct: 1464 IEAVRRENKNLVQEIKDITDQLGEGGRSVHELQKV----VRRLELEKEELQQALD 1514


>gi|221142120|ref|ZP_03566613.1| endopeptidase ClpB [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|304381472|ref|ZP_07364122.1| chaperone protein ClpB [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|269940476|emb|CBI48853.1| putative ATPase subunit of an ATP-dependent protease
           [Staphylococcus aureus subsp. aureus TW20]
 gi|302750802|gb|ADL64979.1| ATPase subunit of an ATP-dependent protease, ClpB [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304339835|gb|EFM05779.1| chaperone protein ClpB [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|329313642|gb|AEB88055.1| ATPase subunit of an ATP-dependent protease, ClpB [Staphylococcus
           aureus subsp. aureus T0131]
          Length = 869

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|198435735|ref|XP_002126219.1| PREDICTED: similar to dynein, axonemal, heavy chain 2 [Ciona
            intestinalis]
          Length = 4395

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 16/128 (12%)

Query: 667  LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                +      +  +  +              VS   + + L++ +         RI  +
Sbjct: 3127 SFDKENMSDRVLKKIGQQYVAHSEFHPDNVGRVSVAAQSLCLWVRAMELFG----RIYRV 3182

Query: 727  TG------QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIHAKRK 778
                      A   L  +   L      L      V  ++E + +  E +  +    KRK
Sbjct: 3183 VEPKRQRLDAALEQLKEKQASLAEAKRKL----EEVTEKMENLKKQYEKKSAEKEELKRK 3238

Query: 779  LQLNVEDL 786
             +     L
Sbjct: 3239 AEETELKL 3246


>gi|146186222|ref|XP_001033205.2| Protein kinase domain containing protein [Tetrahymena thermophila]
 gi|146143219|gb|EAR85542.2| Protein kinase domain containing protein [Tetrahymena thermophila
           SB210]
          Length = 1035

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L   +++LK     LK    N++  ++++ E+    Q    + K +         + 
Sbjct: 514 IKELQKDNQQLKKDVDGLKDQNQNLLDEIQKLKEKDELQQQEINQLKDENKANQEKIEQQ 573

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
                     ++ + +++  +MD L+ K++S I
Sbjct: 574 QKTIDELSKDNQKNKEDIAYLMDELK-KLKSEI 605


>gi|119611609|gb|EAW91203.1| translocated promoter region (to activated MET oncogene), isoform
           CRA_a [Homo sapiens]
          Length = 2438

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 266 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 320

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 321 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 378

Query: 810 KSVMDALQKKIQSG 823
              ++ L K ++  
Sbjct: 379 TRAVEELHKLLKEA 392


>gi|18978215|ref|NP_579572.1| chromosome segregation protein smc [Pyrococcus furiosus DSM 3638]
 gi|18894028|gb|AAL81967.1| chromosome segregation protein smc [Pyrococcus furiosus DSM 3638]
          Length = 1291

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 704  EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            E++      E  I   + +I A+      S      E L      LK  + N+ G +  +
Sbjct: 932  ELLPRKASLEEEIEGLVNKINALKNN--ISENEKALELLNKELEKLKSIEENIKGEIRTL 989

Query: 764  WEEYRKLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDS 806
             E+ +KL+   +K + +  V      ++  + N +    +++++
Sbjct: 990  REKRKKLEEDISKLREKKEVLQRKLQELEIEANTLKVRDAQLNA 1033


>gi|57640328|ref|YP_182806.1| hypothetical protein TK0393 [Thermococcus kodakarensis KOD1]
 gi|57158652|dbj|BAD84582.1| hypothetical membrane protein, conserved, containing leucine zipper
           motif [Thermococcus kodakarensis KOD1]
          Length = 266

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 736 MGQDEKLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQ----LNVEDLSCH 789
               +++  L S LK       +  ++  +  E R+L+   A    Q        D    
Sbjct: 139 EQLKQQVSELQSKLKNQPNTAELNAKILNLTRENRELKAQLANLTNQYNTVKARADFLEQ 198

Query: 790 KIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +  +    +  ++     K  +S ++  +K+   G ++L
Sbjct: 199 QNDEYRKMIQTLLEGASQKSEQSYIEKAKKEKLIGSVLL 237


>gi|326926573|ref|XP_003209473.1| PREDICTED: cingulin-like protein 1-like [Meleagris gallopavo]
          Length = 1291

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +  R+ +  Q +KL    + LK +   +  + EE+++++  ++      K +L       
Sbjct: 803 EEVRNSIENQVKKLTEANTQLKRTVDELETKNEELYKQFDNMKGEENSMKEKLKRYKDEN 862

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            ++ +    +   +E ++KEL ++  +L+ ++++
Sbjct: 863 QQLEE----ALKYAEKEAKELMALKASLESQLEN 892


>gi|315194507|gb|EFU24899.1| putative ATPase subunit of an ATP-dependent protease
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 869

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|307595920|ref|YP_003902237.1| hypothetical protein Vdis_1814 [Vulcanisaeta distributa DSM 14429]
 gi|307551121|gb|ADN51186.1| conserved hypothetical protein [Vulcanisaeta distributa DSM 14429]
          Length = 331

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 70/147 (47%), Gaps = 20/147 (13%)

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           ++  +  +++E+  E  +++     R+ +        +K+ +   +S +I++++SK  EL
Sbjct: 5   NEEELESKIKELSSEILRIRNEIESREKEREGLRNELNKVREE--ISSVINQLNSKRAEL 62

Query: 810 KSVMDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGG 866
           K V D + K  K +  I+  +   K+K+  +L  + ++L+DR     +L ++   ++   
Sbjct: 63  KGVKDEIAKLRKSRDDIVSTLKQLKDKRLELLKRI-KELIDRVRKYRELLKMVNDLI--- 118

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVA 893
             GG+P        + +K  + I  + 
Sbjct: 119 --GGKP-------VDKDKLKELIDKLE 136


>gi|298694214|gb|ADI97436.1| putative ATP-dependent protease protein [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 869

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|296276107|ref|ZP_06858614.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus MR1]
          Length = 621

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 187 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 244

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 245 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 278


>gi|297590182|ref|ZP_06948821.1| chaperone protein ClpB [Staphylococcus aureus subsp. aureus MN8]
 gi|297576481|gb|EFH95196.1| chaperone protein ClpB [Staphylococcus aureus subsp. aureus MN8]
 gi|312438662|gb|ADQ77733.1| chaperone protein ClpB [Staphylococcus aureus subsp. aureus TCH60]
          Length = 882

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 448 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 505

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 506 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 539


>gi|229918283|ref|YP_002886929.1| peptidase M23 [Exiguobacterium sp. AT1b]
 gi|229469712|gb|ACQ71484.1| Peptidase M23 [Exiguobacterium sp. AT1b]
          Length = 431

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 11/91 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q+         EKL    + LK  + ++V + E++ +  ++L     +R  +  ++ L  
Sbjct: 162 QQIFEEYEATKEKLAKAQADLKAERDSLVKQKEDLEKRQKELDQKMKERAAK--IKKLEA 219

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            K   V F S ++       L+ + D L+ +
Sbjct: 220 EK---VKFESKLM------SLQEMEDTLKAQ 241


>gi|49485751|ref|YP_042972.1| putative ATPase subunit of an ATP-dependent protease
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651666|ref|YP_185847.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus COL]
 gi|87160081|ref|YP_493577.1| chaperone clpB [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|151221057|ref|YP_001331879.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509174|ref|YP_001574833.1| endopeptidase ClpB [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253731581|ref|ZP_04865746.1| S14 family endopeptidase ClpB [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253732668|ref|ZP_04866833.1| S14 family endopeptidase ClpB [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|262049325|ref|ZP_06022199.1| hypothetical protein SAD30_1623 [Staphylococcus aureus D30]
 gi|262052146|ref|ZP_06024354.1| hypothetical protein SA930_1469 [Staphylococcus aureus 930918-3]
 gi|282922254|ref|ZP_06329949.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A9765]
 gi|284023901|ref|ZP_06378299.1| chaperone clpB [Staphylococcus aureus subsp. aureus 132]
 gi|294847963|ref|ZP_06788710.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A9754]
 gi|297208391|ref|ZP_06924821.1| chaperone protein ClpB [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|81649655|sp|Q6GAV1|CLPB_STAAS RecName: Full=Chaperone protein ClpB
 gi|81694855|sp|Q5HHB0|CLPB_STAAC RecName: Full=Chaperone protein ClpB
 gi|49244194|emb|CAG42620.1| putative ATPase subunit of an ATP-dependent protease
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57285852|gb|AAW37946.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus COL]
 gi|87126055|gb|ABD20569.1| Chaperone clpB [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|150373857|dbj|BAF67117.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160367983|gb|ABX28954.1| S14 family endopeptidase ClpB [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724580|gb|EES93309.1| S14 family endopeptidase ClpB [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253729446|gb|EES98175.1| S14 family endopeptidase ClpB [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|259159965|gb|EEW45001.1| hypothetical protein SA930_1469 [Staphylococcus aureus 930918-3]
 gi|259162557|gb|EEW47125.1| hypothetical protein SAD30_1623 [Staphylococcus aureus D30]
 gi|282593544|gb|EFB98538.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A9765]
 gi|294824763|gb|EFG41185.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A9754]
 gi|296887130|gb|EFH26033.1| chaperone protein ClpB [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|315197327|gb|EFU27665.1| S14 family endopeptidase ClpB [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141209|gb|EFW33056.1| ATP-dependent chaperone protein ClpB [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143266|gb|EFW35056.1| ATP-dependent chaperone protein ClpB [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 869

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|49483136|ref|YP_040360.1| ATPase subunit of an ATP-dependent protease [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257427689|ref|ZP_05604088.1| chaperone protein clpB [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430324|ref|ZP_05606707.1| chaperone clpB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433021|ref|ZP_05609381.1| chaperone clpB [Staphylococcus aureus subsp. aureus E1410]
 gi|257435925|ref|ZP_05611973.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903512|ref|ZP_06311403.1| ATP-dependent chaperone protein ClpB [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905290|ref|ZP_06313147.1| chaperone protein clpB [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908269|ref|ZP_06316100.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910550|ref|ZP_06318354.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913748|ref|ZP_06321536.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus M899]
 gi|282918672|ref|ZP_06326409.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           C427]
 gi|282923725|ref|ZP_06331403.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           C101]
 gi|283957712|ref|ZP_06375165.1| ATP-dependent chaperone protein ClpB [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500788|ref|ZP_06666639.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509741|ref|ZP_06668451.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           M809]
 gi|293526327|ref|ZP_06671013.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427458|ref|ZP_06820092.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|81651440|sp|Q6GIB2|CLPB_STAAR RecName: Full=Chaperone protein ClpB
 gi|49241265|emb|CAG39944.1| putative ATPase subunit of an ATP-dependent protease
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257275882|gb|EEV07355.1| chaperone protein clpB [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279101|gb|EEV09712.1| chaperone clpB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282436|gb|EEV12571.1| chaperone clpB [Staphylococcus aureus subsp. aureus E1410]
 gi|257285116|gb|EEV15235.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314112|gb|EFB44503.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           C101]
 gi|282317806|gb|EFB48178.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322360|gb|EFB52683.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325942|gb|EFB56250.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327934|gb|EFB58216.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331697|gb|EFB61209.1| chaperone protein clpB [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596467|gb|EFC01428.1| ATP-dependent chaperone protein ClpB [Staphylococcus aureus subsp.
           aureus C160]
 gi|283791163|gb|EFC29978.1| ATP-dependent chaperone protein ClpB [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920869|gb|EFD97931.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095793|gb|EFE26054.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467416|gb|EFF09932.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           M809]
 gi|295128594|gb|EFG58226.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           EMRSA16]
          Length = 869

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|21282586|ref|NP_645674.1| hypothetical protein MW0857 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|300912467|ref|ZP_07129910.1| chaperone protein ClpB [Staphylococcus aureus subsp. aureus TCH70]
 gi|54035863|sp|Q8NXE7|CLPB_STAAW RecName: Full=Chaperone protein ClpB
 gi|21204024|dbj|BAB94722.1| clpB [Staphylococcus aureus subsp. aureus MW2]
 gi|300886713|gb|EFK81915.1| chaperone protein ClpB [Staphylococcus aureus subsp. aureus TCH70]
          Length = 869

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|16080237|ref|NP_391064.1| bacteriophage SPP1 receptor [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311129|ref|ZP_03592976.1| hypothetical protein Bsubs1_17301 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315456|ref|ZP_03597261.1| hypothetical protein BsubsN3_17217 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320372|ref|ZP_03601666.1| hypothetical protein BsubsJ_17185 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324656|ref|ZP_03605950.1| hypothetical protein BsubsS_17336 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|59802580|sp|O32101|YUEB_BACSU RecName: Full=Bacteriophage SPP1 adsorption protein yueB; AltName:
           Full=Bacteriophage SPP1 receptor protein yueB
 gi|2635681|emb|CAB15174.1| bacteriophage SPP1 receptor [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 1076

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 48/104 (46%), Gaps = 15/104 (14%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKRKLQLNVEDL 786
           A+  L     KL+ + + L+  Q     ++E+    + +E ++L    +K   Q  + DL
Sbjct: 555 AKKRLNEAAIKLEEIENALQEKQEEHNNKLEKHIDELNQEIKELNKTVSKLNDQ--IGDL 612

Query: 787 SCHKI---ADVNFMSHIISEVDSKELKSV-----MDALQKKIQS 822
           +   +    +VN    +I  ++ + ++++     +D  ++K+ S
Sbjct: 613 TKKLVDFDNNVNDAYRLIYNLEDEIIQTLQSRGYIDQ-KEKLSS 655


>gi|329729001|gb|EGG65413.1| ATP-dependent chaperone protein ClpB [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 869

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|258452074|ref|ZP_05700090.1| chaperone protein clpB [Staphylococcus aureus A5948]
 gi|257860289|gb|EEV83121.1| chaperone protein clpB [Staphylococcus aureus A5948]
          Length = 869

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|240274260|gb|EER37777.1| nuclear condensin complex subunit Smc4 [Ajellomyces capsulatus
           H143]
          Length = 1328

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGN------VVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            S+L     +++ L++  K S+ +      +   +  + +E  KL    A  + ++    
Sbjct: 867 YSNLADAQRRVQELSAEHKPSKSDDSRSAALEKHISSLEKEIEKLHTETAGVEEEIQALQ 926

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
               +I  V              LK  +D L + + +  +     SK +K  +
Sbjct: 927 NKIMEIGGVRLRGQKAK---VDGLKEQIDLLTEDVSNAEV---SKSKNEKLRI 973


>gi|227500844|ref|ZP_03930893.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217002|gb|EEI82386.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 209

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +KI
Sbjct: 96  IKDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGEKLKQEKAKLEEEIRDKD---NKI 152

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +   + +++
Sbjct: 153 AQLNKEIEKLKNSNNDELIAEITQFKDELK 182


>gi|212224898|ref|YP_002308134.1| V-type ATP synthase subunit I [Thermococcus onnurineus NA1]
 gi|212009855|gb|ACJ17237.1| archaeal/vacuolar-type H+-ATPase, subunit I [Thermococcus
           onnurineus NA1]
          Length = 659

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 66/204 (32%), Gaps = 20/204 (9%)

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH------VSSTGEI 705
             M + + I           Y     VV +   +  V         H        +   +
Sbjct: 5   EEMVKIEVITLNRYKDALLTYLHEQGVVEIRELEVKVAQKDSPNEYHRKAASYSITISRL 64

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ--DEKLKSLASFLKVSQGNVVGRVEEI 763
           +        +   GIR       +RA+     +  +  +K +  FL V +      ++ +
Sbjct: 65  VDFLKTYRKANGGGIREFFFPP-ERAKKTYKYEGIERLIKDVEDFLSVVEPE----IKAV 119

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS------HIISEVDSKELKSVMDALQ 817
             +    Q    + K  + + +L      DV+++        ++  VD  +   +++ ++
Sbjct: 120 ESKITATQTEIERIKADITILELLSALNLDVSYLRPTDMVEIVVGTVDRNKFTPLIEEVK 179

Query: 818 KKIQSGIIMLVGISKEKKASVLIV 841
            K   G ++ V    + K  V+  
Sbjct: 180 -KATEGRVVFVSKDFKDKVLVVFA 202


>gi|118444941|ref|YP_878892.1| ABC transporter, ATP-binding protein [Clostridium novyi NT]
 gi|118135397|gb|ABK62441.1| ABC transporter, ATP-binding protein [Clostridium novyi NT]
          Length = 510

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 2/138 (1%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           + S G  ++        +     RI  +        +  +D   K L   +      +  
Sbjct: 188 MKSEGCAVIFITHKMDEVMKMADRITILRKGETIKTVNKKDSNPKELTELMVGRSVELSI 247

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           +     +E + L++ + K   +  +E +              I+ V     K + +A+  
Sbjct: 248 KTVPFKKENKLLEVKNLKVLNEDKLEIIKNINFDVFKGEILGIAGVAGSGQKELCEAIAG 307

Query: 819 --KIQSGIIMLVGISKEK 834
             KI+ G I+  G + E 
Sbjct: 308 IHKIKDGEIIFEGENIEG 325


>gi|88194669|ref|YP_499465.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|87202227|gb|ABD30037.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|329726187|gb|EGG62657.1| ATP-dependent chaperone protein ClpB [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 869

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|82750590|ref|YP_416331.1| putative ATP-dependent protease protein [Staphylococcus aureus
           RF122]
 gi|82656121|emb|CAI80531.1| putative ATP-dependent protease protein [Staphylococcus aureus
           RF122]
          Length = 869

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|253316136|ref|ZP_04839349.1| hypothetical protein SauraC_08327 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
          Length = 869

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|167761153|ref|ZP_02433280.1| hypothetical protein CLOSCI_03558 [Clostridium scindens ATCC 35704]
 gi|167660819|gb|EDS04949.1| hypothetical protein CLOSCI_03558 [Clostridium scindens ATCC 35704]
          Length = 292

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQG---NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
                 + + L + +S  K        +  R+E   EE +       K+  +L       
Sbjct: 201 LEFQEEKKKMLAAASSEFKEKLEAASELRERIEAATEEQKARIEELKKKYTELAGRSTKV 260

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
                V  M     +++S+  + ++DA++ +++
Sbjct: 261 S----VRLMKA-FPKMESRNHRELLDAMKHRLK 288


>gi|113954220|ref|YP_731070.1| threonyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123031674|sp|Q0I902|SYT_SYNS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113881571|gb|ABI46529.1| threonyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 617

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 12/167 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS +H++  A+  +        G   T  G  +D  + +P T A+LK+I+  +  II + 
Sbjct: 39  HSMSHVMAMAVQKLFPKAQVTIGPW-TEAGFYYDFDNPEPFTEADLKAIKKEMGKIIGRK 97

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVR---VVSVEYEDGGVHSSALCGGTHVSSTG 703
           LP+    ++RE+A            Y   +    V  +     G     LC G HV++T 
Sbjct: 98  LPLERIEVSREEAERR--IKAQNEPYKLEILERLVEPITLYTLGEQWWDLCAGPHVANTS 155

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           E+         S+     R     G   ++ L          A  L 
Sbjct: 156 ELNP-KAFELESVAGAYWR-----GDETKAQLQRIYGTAWETADQLS 196


>gi|28376414|gb|AAM97261.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 455

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G R        +E  + L S L + +   +     V++  E  ++L+     +K QL  +
Sbjct: 57  GLRTLLEQKKAEEIERELKSALGLEKLEKLAELELVKQRLESMKELEXELEAKKSQLEKD 116

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSV 812
            L     A V        E D  +L+ +
Sbjct: 117 GLRVELEALVRL------EADVAQLREL 138


>gi|15923965|ref|NP_371499.1| ClpB chaperone-like protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926564|ref|NP_374097.1| hypothetical protein SA0835 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979301|ref|YP_001441560.1| ClpB chaperone homologue [Staphylococcus aureus subsp. aureus Mu3]
 gi|255005764|ref|ZP_05144365.2| hypothetical protein SauraM_04825 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258406940|ref|ZP_05680093.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258435305|ref|ZP_05689044.1| clpB protein [Staphylococcus aureus A9299]
 gi|258441517|ref|ZP_05690877.1| clpB protein [Staphylococcus aureus A8115]
 gi|258447216|ref|ZP_05695365.1| chaperone clpB [Staphylococcus aureus A6300]
 gi|258449976|ref|ZP_05698074.1| chaperone clpB [Staphylococcus aureus A6224]
 gi|258455489|ref|ZP_05703448.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A5937]
 gi|269202589|ref|YP_003281858.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282894001|ref|ZP_06302232.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A8117]
 gi|282927197|ref|ZP_06334819.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A10102]
 gi|54035781|sp|Q7A6G6|CLPB_STAAN RecName: Full=Chaperone protein ClpB
 gi|54035889|sp|Q99VB5|CLPB_STAAM RecName: Full=Chaperone protein ClpB
 gi|13700779|dbj|BAB42075.1| clpB [Staphylococcus aureus subsp. aureus N315]
 gi|14246744|dbj|BAB57137.1| ClpB chaperone homologue [Staphylococcus aureus subsp. aureus Mu50]
 gi|156721436|dbj|BAF77853.1| ClpB chaperone homologue [Staphylococcus aureus subsp. aureus Mu3]
 gi|257841479|gb|EEV65920.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257848966|gb|EEV72949.1| clpB protein [Staphylococcus aureus A9299]
 gi|257852307|gb|EEV76233.1| clpB protein [Staphylococcus aureus A8115]
 gi|257853964|gb|EEV76918.1| chaperone clpB [Staphylococcus aureus A6300]
 gi|257856896|gb|EEV79799.1| chaperone clpB [Staphylococcus aureus A6224]
 gi|257862307|gb|EEV85076.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A5937]
 gi|262074879|gb|ACY10852.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282590886|gb|EFB95961.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A10102]
 gi|282763487|gb|EFC03616.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A8117]
 gi|285816654|gb|ADC37141.1| ClpB protein [Staphylococcus aureus 04-02981]
 gi|312829371|emb|CBX34213.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
           ECT-R 2]
          Length = 869

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|312892330|ref|ZP_07751825.1| Peptidase M23 [Mucilaginibacter paludis DSM 18603]
 gi|311295114|gb|EFQ72288.1| Peptidase M23 [Mucilaginibacter paludis DSM 18603]
          Length = 426

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 16/125 (12%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
           +     +S LK  +  +  ++E++     E  +  +    + +       L   KI +++
Sbjct: 20  KTYAQSSSELKKQREQLTQQLEKLNRDFEETSKNKRSTLKQLETIKAQISLREEKIKNIS 79

Query: 796 FMSHIISEVDSK------ELKSVMDALQKKIQSGIIMLVGISKE---KKASVLIVVTEDL 846
               ++    S        L+S +D L+K+     ++L     +    K   +  V +D 
Sbjct: 80  SGIRLLDNQISDNTNTVHSLQSQLDQLKKEY--AAMVLFAFRNQSAYNKLMFIF-VAKDF 136

Query: 847 LDRFN 851
              + 
Sbjct: 137 NQAYK 141


>gi|293373850|ref|ZP_06620192.1| plasmid recombination enzyme [Bacteroides ovatus SD CMC 3f]
 gi|292631071|gb|EFF49707.1| plasmid recombination enzyme [Bacteroides ovatus SD CMC 3f]
          Length = 453

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---- 804
           LK   G +   V+++  E +  +    + K ++  E L   K      +   +  +    
Sbjct: 216 LKRQTGELETDVQQLQSEKKAAEKRLLQIKREIGTERLEVVKTEAKTAIIAKVGSLLGSG 275

Query: 805 DSKELKSVMDALQKKI 820
           + KELK     L+ ++
Sbjct: 276 EIKELKQENQQLRDEV 291


>gi|320009814|gb|ADW04664.1| transcriptional regulator, GntR family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 227

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 18/114 (15%)

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
              ++ R+E++ EE R+L            V DL+   + D  F + I+    ++ L  +
Sbjct: 113 SAQLIARLEQLLEEQREL----------AEVGDLAAVSVKDRCFHAEIVKNAGNEILSRL 162

Query: 813 MDALQK-KIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFNAVDLARLSAKVL 863
            D L+  +++ G+ ++          +   +TE  +LLD   A D A  +A+V+
Sbjct: 163 YDQLRDRQLRMGVAVMEAHPG----RIAANITEHGELLDAIRAGD-AEGAAQVV 211


>gi|224072134|ref|XP_002303630.1| predicted protein [Populus trichocarpa]
 gi|222841062|gb|EEE78609.1| predicted protein [Populus trichocarpa]
          Length = 712

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             + +++ ++   LK  + N   R+E++  +   LQL     + Q     L   K  +V+
Sbjct: 169 KEKGDEISTIQKQLKDGEKNFTSRIEDLMAQVNNLQLETVSLRSQNA--KLEASKRKEVS 226

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQS 822
                     +K LK+ ++ LQK++ S
Sbjct: 227 --------AQAKGLKNRINILQKELDS 245


>gi|195436646|ref|XP_002066268.1| GK18186 [Drosophila willistoni]
 gi|194162353|gb|EDW77254.1| GK18186 [Drosophila willistoni]
          Length = 532

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--------QLIHAK 776
           AI  Q     L    E+L    + LK     V G+++   EE RK         +L+  +
Sbjct: 20  AIVEQGIDEWLKEAAEELGETNNLLK-HIDTVNGQIKSNLEEQRKALEAVAQIEELLAKQ 78

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              +    ++       ++      +E+  KEL+ +   LQ+  +  I+ L
Sbjct: 79  IAFEDAKSEVLLEAFKKISVNGEAYAEITGKELRGLA-QLQEGTKQLIVSL 128


>gi|220923662|ref|YP_002498964.1| MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor
           [Methylobacterium nodulans ORS 2060]
 gi|219948269|gb|ACL58661.1| MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor
           [Methylobacterium nodulans ORS 2060]
          Length = 1063

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            H    + +L++    L+ +   +    EE+     + Q ++ + +      + S  ++ 
Sbjct: 649 EHTQRLESELRATKDRLQATIEELESTNEELKSSNEEYQSLNEELQSANEELETSKEELQ 708

Query: 793 DVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
            VN     ++   +    EL      L+  ++S  I  V +  E + +     T  + + 
Sbjct: 709 SVNEELTTVNGELAHRVNELTRATSDLKNFLESTQIATVFLDNELRVT---NATPAVAEV 765

Query: 850 FNAVD 854
           F+ VD
Sbjct: 766 FHLVD 770


>gi|149631816|ref|XP_001509016.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform 2
            [Ornithorhynchus anatinus]
          Length = 1979

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 50/116 (43%), Gaps = 12/116 (10%)

Query: 726  ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA------KRKL 779
            +   RAR      ++    LA+    +Q N   R +++  + ++L+          K K 
Sbjct: 1761 VMSDRARKATQQSEQLSNELATERSAAQKNESAR-QQLERQNKELKSKLQEMEGTIKSKF 1819

Query: 780  QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            + N+  L       +  +   + + +++E ++   +L++K +    +L+ +  E+K
Sbjct: 1820 KANITALEAK----IAQLEEQVEQ-EAREKQAAAKSLKQKDKKLKEVLLQVEDERK 1870



 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 730  RARSHLMGQDEKLK-SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+ +L      L   L+   K    ++   VE + E  +KLQ        Q   +  S 
Sbjct: 1364 EAKQNLERHVSTLNVQLSDS-KKKLQDLASTVENLEEGKKKLQKEIEGLTQQFEEKAASY 1422

Query: 789  HKIADVNF-MSHIISE--VDSKELKSVMDALQKKIQS 822
             K+      +   + +  VD    + ++  L+KK + 
Sbjct: 1423 DKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKK 1459


>gi|118087494|ref|XP_419285.2| PREDICTED: similar to Hook-related protein 1 [Gallus gallus]
          Length = 1888

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L   + ++K +   ++        R EE+  E   L+  +   + ++    ++C KI   
Sbjct: 603 LNKLEFEIKQVRKEME-HYKEKAERAEELENELHHLEKENELLQKKIANLSITCEKIEA- 660

Query: 795 NFMSHIISEVDSKE--LKSVMDALQK 818
             +    S++D +   LK  +D+L+ 
Sbjct: 661 --LEKENSDLDIENRKLKKTLDSLKN 684


>gi|114568433|ref|XP_001165371.1| PREDICTED: translocated promoter region (to activated MET oncogene)
           isoform 1 [Pan troglodytes]
          Length = 2349

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              ++ L K ++  
Sbjct: 304 TRAVEELHKLLKEA 317


>gi|114568435|ref|XP_001165406.1| PREDICTED: translocated promoter region (to activated MET oncogene)
           isoform 2 [Pan troglodytes]
          Length = 2357

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              ++ L K ++  
Sbjct: 304 TRAVEELHKLLKEA 317


>gi|114568429|ref|XP_514063.2| PREDICTED: translocated promoter region (to activated MET oncogene)
           isoform 4 [Pan troglodytes]
 gi|114568431|ref|XP_001165442.1| PREDICTED: translocated promoter region (to activated MET oncogene)
           isoform 3 [Pan troglodytes]
          Length = 2363

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              ++ L K ++  
Sbjct: 304 TRAVEELHKLLKEA 317


>gi|110803609|ref|YP_697540.1| exonuclease SbcC [Clostridium perfringens SM101]
 gi|110684110|gb|ABG87480.1| exonuclease SbcC [Clostridium perfringens SM101]
          Length = 1172

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  +   LK       + + N+   +E++ EE   L+ I  K       E + C KI
Sbjct: 651 LKSLEEEFNTLKEKVEEFNLKKENLEKDLEKLKEEKNNLENIFNK------AEVILCEKI 704

Query: 792 ADVNFMSHIISEVDSKELK---SVMDALQKKIQ 821
                ++  I EVD KELK   S +++++ +++
Sbjct: 705 VREKEIASKIKEVD-KELKLKNSELNSIKNELK 736


>gi|148267408|ref|YP_001246351.1| ATPase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393461|ref|YP_001316136.1| ATPase [Staphylococcus aureus subsp. aureus JH1]
 gi|257795291|ref|ZP_05644270.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A9781]
 gi|258421908|ref|ZP_05684829.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A9719]
 gi|295405781|ref|ZP_06815590.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A8819]
 gi|297245372|ref|ZP_06929243.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A8796]
 gi|147740477|gb|ABQ48775.1| ATPase AAA-2 domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945913|gb|ABR51849.1| ATPase AAA-2 domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257789263|gb|EEV27603.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A9781]
 gi|257842241|gb|EEV66669.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A9719]
 gi|294969216|gb|EFG45236.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A8819]
 gi|297177675|gb|EFH36925.1| ATP-dependent chaperone ClpB [Staphylococcus aureus A8796]
 gi|315130444|gb|EFT86431.1| ATPase AAA-2 domain protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329728201|gb|EGG64640.1| ATP-dependent chaperone protein ClpB [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 869

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+    +   ++  + E  ++ QL  +++ L+    + 
Sbjct: 435 ASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQE--KRAQLDESRQALEDAQTNN 492

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 493 NLEKAAELQY--GTIPQLE-KELRELEDNFQDEQGED 526


>gi|330960926|gb|EGH61186.1| response regulator receiver [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 1167

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI---HAKRKLQLNVEDLS 787
           A   L  Q   LK   + L+  Q  +    E++ E+ + L        ++  +LN+    
Sbjct: 420 ANEELEEQSRILKESQAHLETQQAELEQTNEQLAEQSKALAEQRDALDRKNEELNMAQAE 479

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
               AD        S+  S+ L ++   L+  + S +I+   +++  K ++     +   
Sbjct: 480 LQARADE---LQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPKENLTAEQVKFAE 536

Query: 848 DRFNAV-DLARLSAKVL 863
             ++A  DL  L   +L
Sbjct: 537 SIYSAGNDLLNLINDIL 553


>gi|163783880|ref|ZP_02178856.1| hypothetical protein HG1285_05280 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880843|gb|EDP74371.1| hypothetical protein HG1285_05280 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 150

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL--QLNVEDLSCHKIAD 793
             Q+ + K +     +S   +  +++++ E+ +K +    K  +  Q   +D   +K   
Sbjct: 21  ENQETENKQVQEEKTMSVEELKEKIKQLEEKLKKTEDQAKKLSVLYQTLQQDFEAYKARA 80

Query: 794 VNFMSHIISEVD---SKELKSVMDALQKKIQSGII 825
           +      I E     +KEL +V+D  +K ++S  +
Sbjct: 81  IKERQTAIEEAIEKFAKELLNVIDNFEKALESAKV 115


>gi|149631818|ref|XP_001508844.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform 1
            [Ornithorhynchus anatinus]
          Length = 1972

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 50/116 (43%), Gaps = 12/116 (10%)

Query: 726  ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA------KRKL 779
            +   RAR      ++    LA+    +Q N   R +++  + ++L+          K K 
Sbjct: 1754 VMSDRARKATQQSEQLSNELATERSAAQKNESAR-QQLERQNKELKSKLQEMEGTIKSKF 1812

Query: 780  QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            + N+  L       +  +   + + +++E ++   +L++K +    +L+ +  E+K
Sbjct: 1813 KANITALEAK----IAQLEEQVEQ-EAREKQAAAKSLKQKDKKLKEVLLQVEDERK 1863



 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 730  RARSHLMGQDEKLK-SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+ +L      L   L+   K    ++   VE + E  +KLQ        Q   +  S 
Sbjct: 1357 EAKQNLERHVSTLNVQLSDS-KKKLQDLASTVENLEEGKKKLQKEIEGLTQQFEEKAASY 1415

Query: 789  HKIADVNF-MSHIISE--VDSKELKSVMDALQKKIQS 822
             K+      +   + +  VD    + ++  L+KK + 
Sbjct: 1416 DKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKK 1452


>gi|149631820|ref|XP_001509080.1| PREDICTED: similar to smooth muscle myosin heavy chain 11 isoform 3
            [Ornithorhynchus anatinus]
          Length = 1978

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 50/116 (43%), Gaps = 12/116 (10%)

Query: 726  ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA------KRKL 779
            +   RAR      ++    LA+    +Q N   R +++  + ++L+          K K 
Sbjct: 1760 VMSDRARKATQQSEQLSNELATERSAAQKNESAR-QQLERQNKELKSKLQEMEGTIKSKF 1818

Query: 780  QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            + N+  L       +  +   + + +++E ++   +L++K +    +L+ +  E+K
Sbjct: 1819 KANITALEAK----IAQLEEQVEQ-EAREKQAAAKSLKQKDKKLKEVLLQVEDERK 1869



 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 730  RARSHLMGQDEKLK-SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+ +L      L   L+   K    ++   VE + E  +KLQ        Q   +  S 
Sbjct: 1363 EAKQNLERHVSTLNVQLSDS-KKKLQDLASTVENLEEGKKKLQKEIEGLTQQFEEKAASY 1421

Query: 789  HKIADVNF-MSHIISE--VDSKELKSVMDALQKKIQS 822
             K+      +   + +  VD    + ++  L+KK + 
Sbjct: 1422 DKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKK 1458


>gi|123385784|ref|XP_001299166.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121879947|gb|EAX86236.1| hypothetical protein TVAG_043430 [Trichomonas vaginalis G3]
          Length = 1151

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED----LSC 788
           + L  ++ K+      LK     +  +     EE   L+    + K + N ++       
Sbjct: 546 NELNEKNAKIAEQEEALKNKDEELKNK----NEENDNLKKEIEELKNKNNEQEEALKAKD 601

Query: 789 HKIADVNF-MSHIISEVDSKE 808
            +I + N  ++     + +K+
Sbjct: 602 EEINEKNGKIAEQEEALKAKD 622


>gi|28396189|gb|AAO39002.1| HOMER1F [Rattus norvegicus]
 gi|149059040|gb|EDM10047.1| homer homolog 1 (Drosophila), isoform CRA_f [Rattus norvegicus]
 gi|149059041|gb|EDM10048.1| homer homolog 1 (Drosophila), isoform CRA_f [Rattus norvegicus]
 gi|149059042|gb|EDM10049.1| homer homolog 1 (Drosophila), isoform CRA_f [Rattus norvegicus]
          Length = 180

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 714 SSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             +   +  +E ++ Q     SH     + ++ L   LKV +  +  R+++  +  R+LQ
Sbjct: 49  ERLHKRVTELECVSSQANAVHSHKTELSQTVQELEETLKVKEEEI-ERLKQEIDNARELQ 107

Query: 772 LIHAKRKLQLNVEDLSCHKIAD 793
                   +L   ++    +  
Sbjct: 108 EQRDSLTQKLQEVEIRNKDLEG 129


>gi|254496790|ref|ZP_05109644.1| hypothetical protein LDG_1229 [Legionella drancourtii LLAP12]
 gi|254353989|gb|EET12670.1| hypothetical protein LDG_1229 [Legionella drancourtii LLAP12]
          Length = 146

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----QLIHAKRKLQLNVE 784
           + A   +   +  L+     LK     +  R++E+  + + L    + +   + L L  +
Sbjct: 34  KTATEEMKDGNNLLEKTTHDLKEIDKKLEKRIDELMNQNKGLLNVIEKLEEYKNLILKKD 93

Query: 785 DLSCHKIADV-NFMSHIISEVD-SKELKSVMDALQKKIQ 821
           +       D+    + + S ++  KEL+  +  L+   +
Sbjct: 94  EALSKAEQDMQKLRADLESNINLMKELRDTIKILENHNE 132


>gi|238809728|dbj|BAH69518.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 609

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQG--NVVGRV-------EEIWEEYRKLQLIHAKRKLQ 780
             +  +  ++ ++K L   LK      ++  ++       E++ +E  +L       K  
Sbjct: 158 EVKQKINQKNNEIKDLEEQLKSDPSNQDLKDKLAKTKEQQEKLVKERNELFKEINNFKNN 217

Query: 781 LNVEDLSCHKIAD--VNFMSHIISEVDSKELKSVMDA 815
           +N        + +    F++    E   KE K  +DA
Sbjct: 218 INATKKQLQNVKNKLWKFITQKAKEDKLKETKETIDA 254


>gi|123231818|emb|CAM15829.1| novel protein [Danio rerio]
          Length = 435

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 725 AITGQRARSHLMGQDEKLK-SLASFLKVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           A+   +A   L  + EKL   LA+ LK S    N+    + + ++ ++L+   +    + 
Sbjct: 102 AVEKSQAVDDLKNEKEKLTMDLANSLKDSNILLNLKKECDNLNDQLKELKKRESTLTSES 161

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             E  +  +       S +ISE D KEL SV + L+K+  S
Sbjct: 162 EKEKAALQQSLQTQ--SALISEKD-KELDSVRNELKKERDS 199


>gi|119611612|gb|EAW91206.1| translocated promoter region (to activated MET oncogene), isoform
           CRA_d [Homo sapiens]
          Length = 2349

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              ++ L K ++  
Sbjct: 304 TRAVEELHKLLKEA 317


>gi|114155142|ref|NP_003283.2| nucleoprotein TPR [Homo sapiens]
 gi|215274208|sp|P12270|TPR_HUMAN RecName: Full=Nucleoprotein TPR
 gi|55957278|emb|CAI17859.1| translocated promoter region (to activated MET oncogene) [Homo
           sapiens]
 gi|55960900|emb|CAI13119.1| translocated promoter region (to activated MET oncogene) [Homo
           sapiens]
 gi|119611611|gb|EAW91205.1| translocated promoter region (to activated MET oncogene), isoform
           CRA_c [Homo sapiens]
 gi|225356518|gb|AAI56390.1| Translocated promoter region (to activated MET oncogene) [synthetic
           construct]
          Length = 2363

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              ++ L K ++  
Sbjct: 304 TRAVEELHKLLKEA 317


>gi|73963756|ref|XP_537442.2| PREDICTED: similar to ninein isoform 2 [Canis familiaris]
          Length = 2129

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 596  ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
                            + P+G    +  +      E+ ++   + +   +          
Sbjct: 1340 QCDCFSLWEAHLGKLEVQPEGKVLGLQQTLDEHVPEVMNVHHLIEEQYLEQENTQLLERV 1399

Query: 656  REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            +   IA     +       +V+   +  ED  +         H ++  E+ L     +  
Sbjct: 1400 QASEIAWLHRTIRTHGEKPKVQNQVILEEDTALLGLQDRHLPHGATIAELELEKKKLQEL 1459

Query: 716  IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
             R    R+ A+  Q+        +E+LK++   L+++   +  +VE +  E  KLQ  ++
Sbjct: 1460 TRKLRERVAALVRQKDVPSQGENEEELKAMMHDLQITCSEMQQKVELLRYESEKLQEENS 1519

Query: 776  KRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSKELKSVMDALQKKIQS 822
              + ++      + +S  K+  +N     M   I  V  +   ++ + + L+K+I  
Sbjct: 1520 ILRNEITTLNEEDSISNLKLGKLNGSQEEMWQKIETVKQEKAAVQKMAENLKKQISE 1576


>gi|633226|emb|CAA47021.1| Tpr [Homo sapiens]
          Length = 2349

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              ++ L K ++  
Sbjct: 304 TRAVEELHKLLKEA 317


>gi|1850342|gb|AAB48030.1| Tpr [Homo sapiens]
          Length = 2363

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              ++ L K ++  
Sbjct: 304 TRAVEELHKLLKEA 317


>gi|18310866|ref|NP_562800.1| hypothetical protein CPE1884 [Clostridium perfringens str. 13]
 gi|18145548|dbj|BAB81590.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 451

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            ++L  + E+LKS  + LK ++      VE++ +E ++++  +A+    + +       +
Sbjct: 170 IANLKKEIERLKSENNSLKSAKDKNSHEVEKLSKELKEVKSNNAELNKTIEISRNKEKNL 229

Query: 792 -ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             ++N +    + V+ KEL+     L++K  S    L  I  E K ++
Sbjct: 230 SNEINNLKSKNNNVE-KELR----DLKEKNNS----LSSIVTEAKKNL 268


>gi|322389959|ref|ZP_08063499.1| chromosome segregation protein SMC [Streptococcus parasanguinis
           ATCC 903]
 gi|321143395|gb|EFX38833.1| chromosome segregation protein SMC [Streptococcus parasanguinis
           ATCC 903]
          Length = 1178

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVV-GRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           QRA+       E+LK +   L+  +  +     + + EE   L    A  +LQ    +  
Sbjct: 727 QRAQLAYQQSQEQLKEIQELLEALKSELATDATQSLQEEQESLTEQLAAIELQKENLNRD 786

Query: 788 CHKIA-DVNFMSHIISEV 804
              +  D + +   +  +
Sbjct: 787 IETMKSDKDVLQQKVQNL 804


>gi|313246693|emb|CBY35571.1| unnamed protein product [Oikopleura dioica]
          Length = 594

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 19/122 (15%)

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             +  G  R++ ++   A   L  Q+EKL      LK +       V  + EE  KL+ +
Sbjct: 257 EELENGQERVDRLS--DANDELKEQNEKLSKELDDLKNNNKETEENV--LREENEKLEKV 312

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEV------------DSKELKSV---MDALQK 818
               + ++         + D   +     ++              ++++ +   MD+L+K
Sbjct: 313 VDALRSEIRNISTGSESVQDFKNLLEENEKLREEICALESRVTPVEDIQKLNEEMDSLKK 372

Query: 819 KI 820
           +I
Sbjct: 373 QI 374


>gi|302874774|ref|YP_003843407.1| chromosome segregation protein SMC [Clostridium cellulovorans 743B]
 gi|307690610|ref|ZP_07633056.1| chromosome segregation protein SMC [Clostridium cellulovorans 743B]
 gi|302577631|gb|ADL51643.1| chromosome segregation protein SMC [Clostridium cellulovorans 743B]
          Length = 1191

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 733 SHLMGQDEKLKSL---ASFLKVSQGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVED 785
             L  Q+E LK +    S LK  Q  ++   EE+    ++E  + Q  +  R+       
Sbjct: 246 EALKQQEEALKEIYEDKSKLKDEQNKLIELQEELEKEVFKEREEFQKQNESREEVRAENI 305

Query: 786 LSCHKIADVNFMSHIISEVDSKELKS 811
           L   +I++ N ++     V+ + L+ 
Sbjct: 306 LLEERISNSNVIAEK-EVVEVENLRK 330


>gi|293391877|ref|ZP_06636211.1| recombination associated protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952411|gb|EFE02530.1| recombination associated protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 301

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 52/160 (32%), Gaps = 17/160 (10%)

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D    + +     H               S    G   +    G++       +++ L  
Sbjct: 17  DWSEQTLSAALTNHQYYPCHQSEQSKFGWSQPLKGSELLYFTVGKQILLLAQKEEKMLP- 75

Query: 745 LASFLKVSQGNVVGRVEEI-WEEYRKLQLIHAKRKLQLNVEDLS----------CHKIAD 793
            +  +K     +  R+E++   E RKL+ +  +      V  L              I  
Sbjct: 76  -SHVVK---RELDARIEKLEQAENRKLKKVEKQTLKDDVVATLLPRAFSKYQQTAIWIDA 131

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            N + + +    +K  + V+  L+K + S  ++ +  + E
Sbjct: 132 ENALIY-VDAASAKRAEEVLALLRKSLGSLPVVPLAFTNE 170


>gi|283954885|ref|ZP_06372401.1| hypothetical protein C414_000260157 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793725|gb|EFC32478.1| hypothetical protein C414_000260157 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 1898

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 57/182 (31%), Gaps = 17/182 (9%)

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           +I    +  A               ++ +    D  +             T     +   
Sbjct: 629 KIPQSAEEQAENLRMQYELIGESIQQITNHTNWDKDLTKLEQYNALVAQRTHYEEYINKQ 688

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--- 768
            E  ++        +  Q+    +  Q+E LK ++          + ++ E  +E++   
Sbjct: 689 EEQRLKKEKE----LADQKLIQRIKEQNEALKEISQIGMSEYDKKLSQINEKLKEWKKLG 744

Query: 769 ----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK----ELKSVMDALQKKI 820
               KL+      K+ L++E+ +       N M      +++K     LK +   L++K 
Sbjct: 745 IDKNKLKQAEESLKINLDLENANKDFEDTKNLMIEFYESIENKQEAWALKEI--DLREKY 802

Query: 821 QS 822
             
Sbjct: 803 SK 804


>gi|238852666|ref|ZP_04643076.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
 gi|238834812|gb|EEQ27039.1| conserved hypothetical protein [Lactobacillus gasseri 202-4]
          Length = 279

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           I  I G  A        +  ++ ++ L        N+  + +++ ++ ++LQ      K 
Sbjct: 133 IAIIFGISACQAHNDTVQNEQAQSNELNNTNSKLDNLSEQNKQLMQQNKELQNAINNYKQ 192

Query: 780 QLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQ 821
             N E+L  +++  +   +  +     +++ L++ +D L   I 
Sbjct: 193 DQNKEELQ-NQLDQIKNENQQLKNNAANNQALQNQIDQLGSTID 235


>gi|221316552|ref|ZP_03598357.1| phage major capsid protein, HK97 family [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 196

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A   L   +++++SL++  K     +   V ++  +  +L+    ++  + N + +  
Sbjct: 15  DEADELLKNAEKEVRSLSADEKSKFDELTADVTDLNNQISELESR--QKDGEKNEKTMEE 72

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            K+ +             KEL+ +   L+++    +  L   S+    
Sbjct: 73  RKVDNKE-----------KELRGIEQYLRRQDGEEVRALQTTSQGGAV 109


>gi|115651993|ref|XP_001200118.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115932421|ref|XP_001182382.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1783

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           +T +    +   Q ++L  LA  L      +  RV        +L+    ++ L+     
Sbjct: 103 VTDEDDVENFAYQSKELNKLAFQLGEDPEELRDRV------LHELE-EADRKDLEDYQGQ 155

Query: 786 LSCHKIADVNFMSHIISEVDSKEL 809
            S  ++  ++ +  +  E D K+L
Sbjct: 156 GSAGQVNGLDLVPVLDEEADRKDL 179


>gi|148229775|ref|NP_001085339.1| BRCA1-A complex subunit Abraxas [Xenopus laevis]
 gi|82184717|sp|Q6GR31|F175A_XENLA RecName: Full=BRCA1-A complex subunit Abraxas; AltName:
           Full=Coiled-coil domain-containing protein 98; AltName:
           Full=Protein FAM175A
 gi|49257210|gb|AAH71103.1| MGC81226 protein [Xenopus laevis]
          Length = 408

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRK 778
           R+E      A + +    +   +L   LK +   +V     VE++ E    L+   A++K
Sbjct: 201 RLEFFNEDGALAEVNRISDMHMTLQEELKKTCSQLVESENSVEQLLEAVNDLKKQIAEKK 260

Query: 779 LQLNVEDLSCHKIADVNFM 797
           L +  +     +  + N +
Sbjct: 261 LLMEEKGNKVSEDTEENVL 279


>gi|118362424|ref|XP_001014439.1| hypothetical protein TTHERM_00522610 [Tetrahymena thermophila]
 gi|89296206|gb|EAR94194.1| hypothetical protein TTHERM_00522610 [Tetrahymena thermophila
           SB210]
          Length = 1547

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 21/53 (39%)

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L+++   LK     +  ++  +      ++    K + QL+  +    K+  +
Sbjct: 902 LQNIIDQLKSENEQLQDKISSLLASQELIEKEKKKLESQLSNLEKHNEKLEGI 954


>gi|332198188|gb|AEE36309.1| golgin candidate 5 [Arabidopsis thaliana]
          Length = 976

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+  E+  L       +    R++ A+T +R    L  +  K    A+ LK     ++ +
Sbjct: 391 SNEAEVESLREEYHQRVATLERKVYALTKER--DTLRREQNKKSDAAALLKEK-DEIINQ 447

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
           V    EE  K Q     +  +L  +     +  +   +   +   ++K
Sbjct: 448 VMAEGEELSKKQAAQEAQIRKLRAQIREAEE--EKKGLITKLQSEENK 493


>gi|303234595|ref|ZP_07321229.1| albumin-binding protein [Finegoldia magna BVS033A4]
 gi|302494258|gb|EFL54030.1| albumin-binding protein [Finegoldia magna BVS033A4]
          Length = 954

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 6/162 (3%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V    ++  +  V E +       IE+    +A        + L    + L  ++ ++  
Sbjct: 314 VDKATDVDGVNKVKEEAKDFLNYLIESKGKIKASDDEDMVKKTLAKFDAAL--TKADLDK 371

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--MDAL 816
            V EI +E    +    K K     ++ +   I ++  +S    E+  K++     +D +
Sbjct: 372 VVAEINKEIEAQEKEKQKAKELAEAKENAKKHIDELKHLSDKAKELAKKDIDEATTIDEI 431

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           +  +    +M    +++++A  L    +D  ++  A++  R 
Sbjct: 432 KDIVAKADVMDRKTAEKEEAEKLAAALKDAKEK--AIEAIRK 471


>gi|297297911|ref|XP_002805122.1| PREDICTED: kinectin-like [Macaca mulatta]
          Length = 1307

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  ++ +LK + + LK  + ++  +   ++++ +E +  +    + K Q   +  S    
Sbjct: 935  LKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPH 994

Query: 792  AD-VNFMSHIISEVDS-----KELKSVMDALQKKIQS 822
             + +  +S    E+         LK  ++  +KK   
Sbjct: 995  EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNND 1031


>gi|145540020|ref|XP_001455700.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423508|emb|CAK88303.1| unnamed protein product [Paramecium tetraurelia]
          Length = 692

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 6/114 (5%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+   +        +        R E   G +  ++     + L+             + 
Sbjct: 226 VNEIIDSSEDEERMDQFEEKYNFRFEEEGGNQLITYERDLTDTLRQEPET--ARHRQRLA 283

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL----SCHKIADVNFMSHIISEVDSKE 808
           + +   E+ ++L+    + K     E +       +I  V     ++ E+D K+
Sbjct: 284 KAQREMEQKQQLEKELKQLKAAKKNEIIQKLQKIQQIGGVKDAKLLLEEIDKKD 337


>gi|145337778|ref|NP_178101.3| GC5 (golgin candidate 5); protein binding [Arabidopsis thaliana]
 gi|186496537|ref|NP_001117622.1| GC5 (golgin candidate 5); protein binding [Arabidopsis thaliana]
 gi|122175613|sp|Q0WVL7|GOGC5_ARATH RecName: Full=Golgin candidate 5; Short=AtGC5
 gi|110741773|dbj|BAE98831.1| hypothetical protein [Arabidopsis thaliana]
 gi|164708704|gb|ABY67249.1| putative TMF-like protein [Arabidopsis thaliana]
 gi|332198186|gb|AEE36307.1| golgin candidate 5 [Arabidopsis thaliana]
 gi|332198187|gb|AEE36308.1| golgin candidate 5 [Arabidopsis thaliana]
 gi|332198189|gb|AEE36310.1| golgin candidate 5 [Arabidopsis thaliana]
          Length = 956

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+  E+  L       +    R++ A+T +R    L  +  K    A+ LK     ++ +
Sbjct: 391 SNEAEVESLREEYHQRVATLERKVYALTKER--DTLRREQNKKSDAAALLKEK-DEIINQ 447

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
           V    EE  K Q     +  +L  +     +  +   +   +   ++K
Sbjct: 448 VMAEGEELSKKQAAQEAQIRKLRAQIREAEE--EKKGLITKLQSEENK 493


>gi|172087612|ref|XP_001913348.1| hypothetical protein 007-24 [Oikopleura dioica]
 gi|48994268|gb|AAT47843.1| hypothetical protein 007-24 [Oikopleura dioica]
          Length = 324

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-DV 794
             + EKL+ L   LK+ + N+V + +++ +  + +Q      K ++        K+  ++
Sbjct: 111 EKRREKLEELHGKLKIRKENLVEKEKKLRDFEKSVQEKENLIKTKMAAIKARDDKLNAEL 170

Query: 795 NFMSHIISEVDSKE 808
             +    +++DSK+
Sbjct: 171 KRLEKQEADLDSKQ 184


>gi|269120046|ref|YP_003308223.1| minor structural GP20 protein [Sebaldella termitidis ATCC 33386]
 gi|268613924|gb|ACZ08292.1| minor structural GP20 protein [Sebaldella termitidis ATCC 33386]
          Length = 200

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----QLIHAKRKLQLN 782
             ++    +  +D++LK+L      +   +   +E++  + +      +   A  KL   
Sbjct: 43  AKKKLEKDIAERDKQLKTLKEDTNTN-EELKTIIEKLEADNKAANDDYKKEIAALKLNAA 101

Query: 783 VED-LSCHKIADVNFMSHIIS----EVDSKELKSVMDALQ 817
           +E  L   K  ++  +  ++      ++++ L  + + ++
Sbjct: 102 IESTLLTQKAKNIKAVKSLLDISKISLENENLSGLEEQIK 141


>gi|186685902|ref|YP_001869098.1| threonyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|186468354|gb|ACC84155.1| threonyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 611

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 20/194 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H++  A+  +        G  I  +G  +D    +P +  +LK+I+  +  II + 
Sbjct: 34  HTASHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFSENDLKAIKKEMAKIINRK 92

Query: 647 LPVVTRIMNRED--AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           LPV+   ++RE+              +    ++   +     G     LC G H+ +  E
Sbjct: 93  LPVIREEVSREEAARRIQEIKEPYKLEILADIKNEPITIYHLGNEWWDLCAGPHLENISE 152

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----RV 760
           +     +   S+     R     G   ++ L                S   +      + 
Sbjct: 153 LNP-KAIELESVAGAYWR-----GDETKAQLQRIYATAWE-------SPEQLAEYKRRKE 199

Query: 761 EEIWEEYRKLQLIH 774
           E +  ++RKL    
Sbjct: 200 EALRRDHRKLGKEL 213


>gi|6606241|gb|AAF19134.1|AF143470_1 BdrC3 [Borrelia hermsii]
          Length = 173

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 50/95 (52%), Gaps = 9/95 (9%)

Query: 732 RSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
             +L       L+ + + LK    ++  +++ + E    +++ + + +L+ +++DL  +K
Sbjct: 44  IEYLETTFNLKLEKVEASLKSDIKDLDNKIDTV-ENNLNIKIDNVRNELKSDIKDLD-NK 101

Query: 791 IADV-NFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           I +V N +   I ++D+K     +D ++ +++S I
Sbjct: 102 IDNVRNELKSDIKDLDNK-----IDNVRNELKSDI 131


>gi|81301415|ref|YP_401623.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|123769177|sp|Q31JY3|SYT_SYNE7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81170296|gb|ABB58636.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Synechococcus
           elongatus PCC 7942]
          Length = 604

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H++  A+  +        G   T  G  +D    +P T A+LK+I+  +  II Q 
Sbjct: 27  HTMSHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDTPEPFTEADLKAIKKEMVKIIQQK 85

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVR---VVSVEYEDGGVHSSALCGGTHVSSTG 703
           LPVV   ++RE+A        LG  Y   +       +     G     LC G HV +T 
Sbjct: 86  LPVVREEVSREEAQQR--IEALGEPYKLEILQGLTEPITLYHLGDRWWDLCAGPHVETTA 143

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           E+         S+     R     G   ++ L                +   +      +
Sbjct: 144 ELNP-KAFDLESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLTEYKRRK 190

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++RKL    
Sbjct: 191 EEALKRDHRKLGREL 205


>gi|56751513|ref|YP_172214.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|73919835|sp|Q5N1X6|SYT_SYNP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56686472|dbj|BAD79694.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
          Length = 607

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H++  A+  +        G   T  G  +D    +P T A+LK+I+  +  II Q 
Sbjct: 30  HTMSHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDTPEPFTEADLKAIKKEMVKIIQQK 88

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVR---VVSVEYEDGGVHSSALCGGTHVSSTG 703
           LPVV   ++RE+A        LG  Y   +       +     G     LC G HV +T 
Sbjct: 89  LPVVREEVSREEAQQR--IEALGEPYKLEILQGLTEPITLYHLGDRWWDLCAGPHVETTA 146

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           E+         S+     R     G   ++ L                +   +      +
Sbjct: 147 ELNP-KAFDLESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLTEYKRRK 193

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++RKL    
Sbjct: 194 EEALKRDHRKLGREL 208


>gi|33469117|ref|NP_038941.1| angiopoietin-related protein 3 precursor [Mus musculus]
 gi|25008124|sp|Q9R182|ANGL3_MOUSE RecName: Full=Angiopoietin-related protein 3; AltName:
           Full=Angiopoietin-like protein 3; Flags: Precursor
 gi|5639997|gb|AAD45920.1|AF162224_1 angiopoietin-related protein 3 [Mus musculus]
 gi|18044501|gb|AAH19491.1| Angiopoietin-like 3 [Mus musculus]
 gi|74143679|dbj|BAE28886.1| unnamed protein product [Mus musculus]
 gi|74146392|dbj|BAE28956.1| unnamed protein product [Mus musculus]
 gi|122890633|emb|CAM13333.1| angiopoietin-like 3 [Mus musculus]
 gi|148698947|gb|EDL30894.1| angiopoietin-like 3 [Mus musculus]
          Length = 455

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 43/99 (43%), Gaps = 11/99 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLNVED 785
           + +  ++++L+   S L+V    V         ++E + EE   LQ      + QL    
Sbjct: 90  NEIKEEEKELRRTTSTLQVKNEEVKNMSVELNSKLESLLEEKTALQHKVRALEEQLTNLI 149

Query: 786 LS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           LS     +  +V  +   + + D   ++ ++ +++++ +
Sbjct: 150 LSPAGAQEHPEVTSLKSFVEQQD-NSIRELLQSVEEQYK 187


>gi|320169206|gb|EFW46105.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 277

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 82/243 (33%), Gaps = 37/243 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +V D+T  + + GGQ  D G          R  + DV+       V H     G    + 
Sbjct: 37  LVLDETIMHPQGGGQPSDVGFIQWDAQPERRFTVVDVRADKGAAAVVHHYGSFGSQDLDD 96

Query: 570 ----------SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      + + +D   RR  +  HSA HLL  A+  +  + +  +     PDG   
Sbjct: 97  AALATASAGAPVTIHVDESKRRLHARLHSAGHLLDSAVRNLGHTGLVPSKGYHFPDGPNV 156

Query: 620 DVTHSKPIT---------SAELKSIEDNVNDIIAQNLPVVTRI--------MNREDAIAS 662
           +       T         + EL+ +     D+  + +P  T                 A 
Sbjct: 157 EYLGELEQTVRDGLPAALNIELQRLIATGGDVQVKYVPTSTLEGGGSGHSLAAPSAVPAQ 216

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             +  L     D VR+V++   +        CGGTHV S G++  + +        G  +
Sbjct: 217 ETSEPLRYDSPDAVRMVNIGGVE------CPCGGTHVKSIGDLQNVKVTKVKR-AKGTLK 269

Query: 723 IEA 725
           +  
Sbjct: 270 VYY 272


>gi|292614359|ref|XP_001338147.3| PREDICTED: CAP-Gly domain-containing linker protein 1 [Danio rerio]
          Length = 477

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 725 AITGQRARSHLMGQDEKLK-SLASFLKVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           A+   +A   L  + EKL   LA+ LK S    N+    + + ++ ++L+   +    + 
Sbjct: 144 AVEKSQAVDDLKNEKEKLTMDLANSLKDSNILLNLKKECDNLNDQLKELKKRESTLTSES 203

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             E  +  +       S +ISE D KEL SV + L+K+  S
Sbjct: 204 EKEKAALQQSLQTQ--SALISEKD-KELDSVRNELKKERDS 241


>gi|255073185|ref|XP_002500267.1| dynein-1-alpha heavy chain, flagellar inner arm I1 complex
            [Micromonas sp. RCC299]
 gi|226515529|gb|ACO61525.1| dynein-1-alpha heavy chain, flagellar inner arm I1 complex
            [Micromonas sp. RCC299]
          Length = 4401

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 706  MLLYIVSESSIRAGIR--RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
             +L +++   I +G++  R++   G +A      +  ++K+    L      +    E  
Sbjct: 3157 WVLAMMNYYKIASGVKPKRLKVAKGVKALKKAETELAEIKATVEALNAELAELSKTFEAS 3216

Query: 764  WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
              E ++L+      + +L   +     +A              ++LK +   +++K+
Sbjct: 3217 TAEQKRLKDEAELMERRLEAAEKLIAGLASERVRWT-------EDLKQLA-IVREKL 3265


>gi|168483767|ref|ZP_02708719.1| pneumococcal surface protein A [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042892|gb|EDT50938.1| pneumococcal surface protein A [Streptococcus pneumoniae
           CDC1873-00]
          Length = 544

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK  +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 135 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 188

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + EL++ +  L+K+I +  I+L G   E 
Sbjct: 189 KADELQNKVADLEKEISNLEILLGGADSED 218


>gi|164423145|ref|XP_958567.2| hypothetical protein NCU09063 [Neurospora crassa OR74A]
 gi|157069967|gb|EAA29331.2| hypothetical protein NCU09063 [Neurospora crassa OR74A]
          Length = 1650

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 44/139 (31%), Gaps = 7/139 (5%)

Query: 652  RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              M+  +         +     +++R      +   V S      T    T    +    
Sbjct: 1093 EEMSSVEDEIKALQDKIMKVGGEKLR-----SQKAAVDSLKAEIATQNEETSAAEVKMAK 1147

Query: 712  SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            +E       +       +  ++ +   +   + + +    +  ++  RVEE  E  ++ +
Sbjct: 1148 AEKQKHKLEKDFN-KASKELQNAIQETEALEEEIQNQ-GDTAESLTTRVEEAQEALKEKK 1205

Query: 772  LIHAKRKLQLNVEDLSCHK 790
               A  K +L+ +    ++
Sbjct: 1206 KELAAMKKELDEKTAELNE 1224


>gi|221133395|ref|ZP_03559700.1| hypothetical protein GHTCC_00575 [Glaciecola sp. HTCC2999]
          Length = 295

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQLIHAKRKLQLN 782
           E + G+ A S L  ++++L +L + +     N+    +EE+ +  ++L+    +   +  
Sbjct: 85  ELVLGREAVSELQKKNQELDALETTVSELTENLGKESIEEVAKSIKELEEAKKQVSEKGF 144

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            ++     I DV          +    + +     +K+ +G+
Sbjct: 145 DKEDFVDNINDVLREVSDFKGQNINLRRKL-----EKLGNGL 181


>gi|111656957|ref|ZP_01407771.1| hypothetical protein SpneT_02001808 [Streptococcus pneumoniae
           TIGR4]
          Length = 479

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK  +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 242 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 295

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + EL++ +  L+K+I +  I+L G   E 
Sbjct: 296 KADELQNKVADLEKEISNLEILLGGADSED 325


>gi|115803078|ref|XP_781887.2| PREDICTED: similar to CDC42-binding protein kinase beta
           [Strongylocentrotus purpuratus]
 gi|115934027|ref|XP_001193805.1| PREDICTED: similar to CDC42-binding protein kinase beta
           [Strongylocentrotus purpuratus]
          Length = 907

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q A      + + L+  +  +K  + N+   VEEI E  R+L     + K Q  +     
Sbjct: 513 QSAEDEKSSKIKTLERTSKLIKQEKENLEREVEEIHERNRQLNKEMKEAKSQGKLAMQEF 572

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +I +          +  K  + +   L+ K +   ++
Sbjct: 573 TEINE-----RYADIMSQK--QKLSRDLRDKEEEIEVV 603


>gi|123456829|ref|XP_001316147.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121898845|gb|EAY03924.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2010

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 700  SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-----SQG 754
             +  E+ +     +S +    + I  +T      +L  +   +  ++  +        Q 
Sbjct: 1520 ENISELSIAKEELDSQLANCQKEINRMT--EVDENLKKKLNDMDIISDAVSKISRAKDQK 1577

Query: 755  NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
             +  ++EE+ +E +KLQ  +A+   ++N    S  +   +        E+ 
Sbjct: 1578 ELNTKIEELQKENQKLQTKNAELAEEINSSKFSPRQSKTIQEFRQKFEEIS 1628



 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 45/104 (43%), Gaps = 13/104 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           QR +  ++ ++E+LK +          +  ++EE+ E+ +     + + + ++   +   
Sbjct: 580 QRTKQTVINKEEELKKVRDE----ADKLRKKIEELKEKQQNQINDNEELRKEIKSSEEKM 635

Query: 789 HKIADVN-FMSHIISEVD------SKELKSVMDA--LQKKIQSG 823
            +I   N  +   I + D      S +L+ +++   +++ I   
Sbjct: 636 KEIQSENEILKKQIEKEDENSSNISDDLQKLVNKSLVKESIDEN 679


>gi|71405305|ref|XP_805281.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70868631|gb|EAN83430.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 680

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/402 (8%), Positives = 98/402 (24%), Gaps = 37/402 (9%)

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
             +         GL  +D+ +    +             +             E+  +T+
Sbjct: 94  SRETFIAKKREVGLMRLDLANKEAEIRHLEEEMDRAEKRVRQQQ---------EQLSSTE 144

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                         +   +              + ++ ++   ++  +    ++     +
Sbjct: 145 -------EKFNNFLKHSNLEQDAAVRRAEIESKAKLERLIDIKKLSAQISHMEQDMRKTE 197

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
                 +   +  D+         +        A  + +  A  E      E+ + +   
Sbjct: 198 IQLELCKEYKEFMDSITVPQWFYDVLCGLRVNDASEVILREAEAEYTRRAEELMVAMQKA 257

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R        A       L     +    +GS    +G +  +         EL++  
Sbjct: 258 EARRESHQPVVFAERQKRGGLREERHNDEKNDGSLEDEEGEQVPIEAQLEKLHQELEAEA 317

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
                   +++                  A+L  +Y      +     D  +        
Sbjct: 318 QKRQMEATESIKKEVE-----ALSVEEVRAVLDKEYPQERIPMYFTEPDQILDIFI---- 368

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
               +  E  L  I +   +   + R+       A  +   Q+E    +         ++
Sbjct: 369 ----NVEEGNLFLIQNSQELEEELERV-------AMEYFHEQEEMTTMMRQR-HAQMESL 416

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
             R++E  E  ++L+   A  +   +  D           + 
Sbjct: 417 ATRIKEAQERLKQLEERLADLESTEDGADAGLEAARGKKGIV 458


>gi|309389369|gb|ADO77249.1| hypothetical protein Hprae_1098 [Halanaerobium praevalens DSM 2228]
          Length = 872

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----QLIHAKRK 778
           ++  T       +  +++ +    + LK  +  +  ++  +  + ++L    +L  A+ K
Sbjct: 627 VKFKTQFADLEAVEKENKNIVKTLTKLKARKEKLEEKITTLKNKIKELSTSAKLEQAQTK 686

Query: 779 LQLNVEDLSCH 789
           +     DL   
Sbjct: 687 ISSAQNDLEKK 697


>gi|297828339|ref|XP_002882052.1| hypothetical protein ARALYDRAFT_483764 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327891|gb|EFH58311.1| hypothetical protein ARALYDRAFT_483764 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 726

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 26/61 (42%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            + R  L  +  ++K L   L   +  V   +E + E  + L+  + + KL+ +  + + 
Sbjct: 249 NKLRHELDAKLAEIKQLQMKLNCGEQRVGISIENLKEINKALEKENNELKLKRSELEAAL 308

Query: 789 H 789
            
Sbjct: 309 E 309


>gi|238498310|ref|XP_002380390.1| myosin class II heavy chain (MHC), putative [Aspergillus flavus
            NRRL3357]
 gi|220693664|gb|EED50009.1| myosin class II heavy chain (MHC), putative [Aspergillus flavus
            NRRL3357]
          Length = 2015

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 60/170 (35%), Gaps = 45/170 (26%)

Query: 700  SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ---DEKLKSLASFLKVSQGNV 756
                E   +   S      G++ +  ++ +RA      +    + +  L   LKVS+ N 
Sbjct: 1268 PRASEAEEIGADSLMLQIDGLKEMLRVSDERAEEEYKKRREAQDSVVELQHLLKVSEDNA 1327

Query: 757  V------------------GRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI---- 791
                                ++   E++      L+  HAK KL L   ++S   I    
Sbjct: 1328 ARHSEAAESAETRLLQFKEEKIPYFEQVQSRSDALEQEHAKLKLTLA--EISSKNISLEG 1385

Query: 792  --ADVNF-----------MSHIISEV--DSKELKSVMDALQKKIQSGIIM 826
               +  F               I E+  ++K+L+  +D ++ +I+ G+ +
Sbjct: 1386 TLDEYRFSSDHWKQESEQSKAQIEEMQTENKDLRVTIDHMKSRIEDGLSV 1435


>gi|170029480|ref|XP_001842620.1| structural maintenance of chromosomes smc4 [Culex quinquefasciatus]
 gi|167863204|gb|EDS26587.1| structural maintenance of chromosomes smc4 [Culex quinquefasciatus]
          Length = 1362

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 724  EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE---EYRKLQLIHAKRKLQ 780
            E +  Q A      + EKL   AS LK     +   +E+  E     +K  +   K++ +
Sbjct: 944  EVVAAQEAIRAGNDEREKLDEEASALKTEIDELKVEIEKAHEGSSGIKKEIVAIQKKEGE 1003

Query: 781  LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              ++ L   +I  V  +   + EV     K  +   + K++
Sbjct: 1004 GKMKRLEFEQI--VQAIEKKLGEV-----KDTIPHWRNKLK 1037


>gi|170721287|ref|YP_001748975.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169759290|gb|ACA72606.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 1155

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + A   L  Q   LK   + L+  Q  +    E++ E    L   + +            
Sbjct: 418 KTANEELEEQSRVLKESQAHLETQQAELEQTNEQLSERTDALDRKNDELMQAQQELQARA 477

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM--LVGISKEKKASVLIVVTEDL 846
            ++          S+  S+ L ++   L+  + S +I+  L+  + E   ++     +  
Sbjct: 478 DEL-------QRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENGEG--NLSAEQVKFA 528

Query: 847 LDRFNAV-DLARLSAKVL 863
              ++A  DL  L   +L
Sbjct: 529 ESIYSAGNDLLNLINDIL 546


>gi|169781518|ref|XP_001825222.1| myosin class II heavy chain (MHC) [Aspergillus oryzae RIB40]
 gi|83773964|dbj|BAE64089.1| unnamed protein product [Aspergillus oryzae]
          Length = 2241

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 60/170 (35%), Gaps = 45/170 (26%)

Query: 700  SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ---DEKLKSLASFLKVSQGNV 756
                E   +   S      G++ +  ++ +RA      +    + +  L   LKVS+ N 
Sbjct: 1494 PRASEAEEIGADSLMLQIDGLKEMLRVSDERAEEEYKKRREAQDSVVELQHLLKVSEDNA 1553

Query: 757  V------------------GRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI---- 791
                                ++   E++      L+  HAK KL L   ++S   I    
Sbjct: 1554 ARHSEAAESAETRLLQFKEEKIPYFEQVQSRSDALEQEHAKLKLTLA--EISSKNISLEG 1611

Query: 792  --ADVNF-----------MSHIISEV--DSKELKSVMDALQKKIQSGIIM 826
               +  F               I E+  ++K+L+  +D ++ +I+ G+ +
Sbjct: 1612 TLDEYRFSSDHWKQESEQSKAQIEEMKTENKDLRVTIDHMKSRIEDGLSV 1661


>gi|311265008|ref|XP_003130443.1| PREDICTED: centromere protein F-like [Sus scrofa]
          Length = 3070

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
               +    L     +    A  LK       G+++ + +  ++L+      + +L+  + 
Sbjct: 2719 ANTKILEELKKTKMENLKYADKLKKENDRAQGKIKLLIKSCKQLEEEKEMLQKELSRLEG 2778

Query: 787  SCHKIADVNFMSHIISEV--DSKELKSVMDALQKK 819
               K      +   + E+  + KELK  ++  + K
Sbjct: 2779 VQEKQKTGTVVDASVDELMIEMKELKETLEE-KNK 2812


>gi|254172975|ref|ZP_04879649.1| alanyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214033131|gb|EEB73959.1| alanyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 153

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 12/150 (8%)

Query: 585 INHSATHLLHHALSTILGSHV-SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             H+A H++  A+  +LG        + +  +     V   +  T  E+  IE   N+ +
Sbjct: 9   RTHTALHVVKGAVVKVLGEKAKWTASTYVKGNRGVLAVKFDRKPTPEEVAEIERLANEKV 68

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N+PV    + RE+A       +          V +++       +   C   H  +TG
Sbjct: 69  KENVPVKVYELPREEAEKRFGEDMYDLFPVPE-EVKTLKVVVIKGWNVNACNKEHTKTTG 127

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           EI  +           IR++    G+    
Sbjct: 128 EIGEIK----------IRKVRFRRGRELLE 147


>gi|168804027|ref|YP_001686958.1| hypothetical protein SGHV010 [Glossina pallidipes salivary gland
           hypertrophy virus]
 gi|146164214|gb|ABQ08783.1| hypothetical protein SGHV010 [Glossina pallidipes salivary gland
           hypertrophy virus]
          Length = 1104

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                   E++K     +K S+   +  +++  E+         K+ L+    +      
Sbjct: 425 LKSEKELQEQIKKSLERIKNSEPENIENIQKELEDQFNRNQEILKKSLEQKPIESMVSAA 484

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             V        + D K+LK + + L++ +QS
Sbjct: 485 NQV--------QKDVKDLKQLGEKLKETLQS 507


>gi|47125165|gb|AAH70659.1| LOC431812 protein [Xenopus laevis]
          Length = 648

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-RKLQLIHAKRKLQLNVE 784
           +  +     L  ++ +L +L   LK         ++++ E+Y ++L+ I      ++   
Sbjct: 89  LVKEEQEDLLRKRERELTALKGALKEEVSTHDQEIDKLKEQYDKELKKIRDNLNEEVKNS 148

Query: 785 DLSCHKIADVNFMSHIISEV------DSKELKSVMDALQKKI 820
               ++  + + +  +          +++ELK  ++ L+ KI
Sbjct: 149 SDIANQKNEASQLKAVFENKVKVLLQENEELKWKIENLEDKI 190


>gi|324500090|gb|ADY40053.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1960

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-KLQLNVEDLSCHKIAD 793
           L  +  ++ +L          +  R+ ++ +E  KL++ + +  + +    D    ++  
Sbjct: 734 LQKEKNEIMNLKQRSDADLDQLRERIRKVEQEIDKLKVENKELHENEQKANDAYKEEMNR 793

Query: 794 VNFMSHIISE--VDSKELKSVMDALQKKIQSGI 824
            + +   + +  ++  EL+  +  L +  +  I
Sbjct: 794 AHLLQRELEDAKIELDELRKQLKQLDEDNKERI 826


>gi|291541911|emb|CBL15021.1| chaperone protein DnaK [Ruminococcus bromii L2-63]
          Length = 618

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 22/155 (14%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           I    A+    G+++K+  +++   +S+ ++   V+E  +   + +        +   E+
Sbjct: 454 IVNVSAKDLGTGKEQKIT-ISNSTSMSKEDIDKAVKEAEQFAAEDKKRREAVDAKNEAEN 512

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
           +       V+     I E D   + + + AL++ I      L+G +KE           D
Sbjct: 513 IVYQAEKLVSESGDKIPEDDKNAINTKVAALKEAISKDDAALIGTAKE-----------D 561

Query: 846 LLDRFN--AVDLARLSAKVLGGGGGGGRPHM--AQ 876
           L    N  A  L + +A        GG P M  AQ
Sbjct: 562 LQKTLNDAAAKLYQQAAPQ------GGAPDMNGAQ 590


>gi|290559864|gb|EFD93187.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 185

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 16/175 (9%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L   +      +V   G     + + F+   +  IT  +  S+   + +    N+    +
Sbjct: 26  LDIHVRKADTYNVDNIGKAYIKEIIPFENIKTAEITVNQNISVGLEIKEKNFANISEAVK 85

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              +    A              +RV+S+   D        C   HV++T EI+   +  
Sbjct: 86  ENPKLRFNADRL------DGKQTIRVISIGDYDFS-----ACKHMHVNNTNEIVAFSVTR 134

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
            S +  G   +E + G+ A   ++     L  +A    +    +  +V E  +  
Sbjct: 135 VSYLG-GETEVEFLAGENAIRFMINTKNALLDVA----MKNHFIAEKVNEYIDNR 184


>gi|297543798|ref|YP_003676100.1| SMC domain protein [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296841573|gb|ADH60089.1| SMC domain protein [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 1177

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-------EEYRKLQLIHAKRKLQL 781
           + A      + E+LK+L    +     +  ++  +        +E   +Q    ++K + 
Sbjct: 452 EEAIKRQQKEHERLKNLIKQKEEEIQALEEKIRNLEGHMPPTSDELLIMQQQLEEQKSKF 511

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQ 821
                +     ++  +   IS++  K   ++K + D ++ K +
Sbjct: 512 LEAKENDELRQNIKGILDEISDLKGKLKEQIKKLEDDIKTKSK 554


>gi|219113287|ref|XP_002186227.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583077|gb|ACI65697.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 937

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 14/81 (17%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK----LWK 141
           H   F+ L N  FG YFKE A         +E   D    +++     +  ++     W+
Sbjct: 703 HSMRFQRLVNHFFGDYFKEDA--------DEEIASDMADRWVSFAKTGDPNYEGSKAYWR 754

Query: 142 KISGLSADKIIRITTNDNFWS 162
               +  +++ R    +  W 
Sbjct: 755 PWRYILDERLGR--DKERPWE 773


>gi|156044290|ref|XP_001588701.1| hypothetical protein SS1G_10248 [Sclerotinia sclerotiorum 1980]
 gi|154694637|gb|EDN94375.1| hypothetical protein SS1G_10248 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 549

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 15/117 (12%)

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE---YR 768
           +E +++ G  RI A T          +   L+  A   K     +  +VE + ++     
Sbjct: 268 TEKAVKEGSERISAET----------KLRTLEREAEEAKAHSDELQKKVEALEKKVSTLT 317

Query: 769 KLQLIH-AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            L   H A+ + Q    +    + +D+      +   +S+ LK   D L+K+   GI
Sbjct: 318 TLHKEHDARSQAQKKEREKVEKEASDLRIRFASVENENSR-LKEERDRLKKRDAQGI 373


>gi|125602134|gb|EAZ41459.1| hypothetical protein OsJ_25981 [Oryza sativa Japonica Group]
          Length = 253

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 24/49 (48%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +L++ A  LK +  ++  +++E+  E  +L+    K K++    +    
Sbjct: 132 QLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVK 180


>gi|125560086|gb|EAZ05534.1| hypothetical protein OsI_27750 [Oryza sativa Indica Group]
          Length = 247

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 24/49 (48%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +L++ A  LK +  ++  +++E+  E  +L+    K K++    +    
Sbjct: 126 QLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVK 174


>gi|115474727|ref|NP_001060960.1| Os08g0138500 [Oryza sativa Japonica Group]
 gi|38636768|dbj|BAD03011.1| helix-loop-helix-like protein [Oryza sativa Japonica Group]
 gi|113622929|dbj|BAF22874.1| Os08g0138500 [Oryza sativa Japonica Group]
 gi|215736868|dbj|BAG95797.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|323388919|gb|ADX60264.1| bHLH transcription factor [Oryza sativa Japonica Group]
          Length = 253

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 24/49 (48%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +L++ A  LK +  ++  +++E+  E  +L+    K K++    +    
Sbjct: 132 QLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVK 180


>gi|29367409|gb|AAO72577.1| helix-loop-helix-like protein [Oryza sativa Japonica Group]
          Length = 216

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 24/49 (48%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +L++ A  LK +  ++  +++E+  E  +L+    K K++    +    
Sbjct: 95  QLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVK 143


>gi|328873530|gb|EGG21897.1| hypothetical protein DFA_01783 [Dictyostelium fasciculatum]
          Length = 479

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDSKEL 809
           V    +  +  E  E+ +++ +   + + +++        +I DV+ +   + ++D+ ++
Sbjct: 375 VEDDEITAKYNEAQEQDKEIPIKTKELEKEISNIAAKFREQIEDVSKLKQRLQQLDAGDI 434

Query: 810 KSVMDALQKKIQ 821
           ++++D   KK +
Sbjct: 435 QTIVDDSMKKAK 446


>gi|310818442|ref|YP_003950800.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309391514|gb|ADO68973.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2483

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
              L  Q  +L      LK +   +  +  E+ E+ ++L+  + + + +    +L+   + 
Sbjct: 1699 QELQSQSRELTQQQEELKRTNTELEAQALELEEKAKQLEEQNTRVEEKNAEVELARSSLE 1758

Query: 793  DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM--LVGISKEKKAS 837
            +      +IS+  S+ L ++   L+  + S +I+  L+  +K+   S
Sbjct: 1759 EKAEQLSLISKYKSEFLANMSHELRTPLNSLLILAKLLADNKDGNLS 1805


>gi|297280798|ref|XP_001105956.2| PREDICTED: centromere protein F-like [Macaca mulatta]
          Length = 3103

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 704  EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG-QDEKLKSLASFLKVSQGNVVGRVEE 762
            E+ LL    E    +    ++A T   A   L   + + LK + + LK       G+++ 
Sbjct: 2734 EMDLLKSSKEELNNS----LKATT--EALEELKKTKMDNLKYV-NQLKKENERAQGKIKL 2786

Query: 763  IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKI 820
            + +  ++L+      + +L+    +  K      M   + E+  + KELK  ++   K+ 
Sbjct: 2787 LIKSCKQLEEEKEILQKELSKLQAAQEKQKTGTVMDIKVDELTTEIKELKEALEEKTKEA 2846

Query: 821  QS 822
              
Sbjct: 2847 DE 2848


>gi|300361544|ref|ZP_07057721.1| conserved hypothetical protein [Lactobacillus gasseri JV-V03]
 gi|300354163|gb|EFJ70034.1| conserved hypothetical protein [Lactobacillus gasseri JV-V03]
          Length = 279

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           I  I G  A        +  ++ ++ L        N+  + +++ ++ ++LQ      K 
Sbjct: 133 IAIIFGISACQAHNDTVQNEQAQSNALNNTNSKLDNLSEQNKQLMQQNKELQNAINNYKQ 192

Query: 780 QLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQ 821
             N E+L  +++  +   +  +     +++ L++ +D L   I 
Sbjct: 193 DQNKEELQ-NQLDQIKNENQQLKNNAANNQALQNQIDQLGSTID 235


>gi|254167772|ref|ZP_04874622.1| hypothetical protein ABOONEI_1064 [Aciduliprofundum boonei T469]
 gi|197623300|gb|EDY35865.1| hypothetical protein ABOONEI_1064 [Aciduliprofundum boonei T469]
          Length = 66

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +    ++ L+ + +  D+ R +A   GG GGG    +A +G       ++       F
Sbjct: 2   VHISARGSKYLVPKVHLGDIMREAASKFGGNGGG--HDIA-AGATIPKGTEE------EF 52

Query: 896 LKK 898
           LK+
Sbjct: 53  LKE 55


>gi|171686388|ref|XP_001908135.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943155|emb|CAP68808.1| unnamed protein product [Podospora anserina S mat+]
          Length = 850

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 55/139 (39%), Gaps = 22/139 (15%)

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK--------------SLA 746
           +T E+  LY  +++ +     +IEAI  +     LM ++   K               + 
Sbjct: 392 NTSELKALYKEAQAVVNRQKLQIEAIISEN--KALMEENSTFKTKRESVSDEDYVRTDVF 449

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
              K+   +++ R+  +    ++L+    K + + +   +     A +  +S    ++ +
Sbjct: 450 KHFKLQNEDLIKRINHLEATNKQLREEAEKLRAERSDWQVKVEAEAQL-VVSEAEDQIQA 508

Query: 807 KE-----LKSVMDALQKKI 820
           K+     +++  D L  ++
Sbjct: 509 KDQDLTRIRAARDDLVAEL 527


>gi|115377642|ref|ZP_01464837.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365351|gb|EAU64391.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2450

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
              L  Q  +L      LK +   +  +  E+ E+ ++L+  + + + +    +L+   + 
Sbjct: 1666 QELQSQSRELTQQQEELKRTNTELEAQALELEEKAKQLEEQNTRVEEKNAEVELARSSLE 1725

Query: 793  DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM--LVGISKEKKAS 837
            +      +IS+  S+ L ++   L+  + S +I+  L+  +K+   S
Sbjct: 1726 EKAEQLSLISKYKSEFLANMSHELRTPLNSLLILAKLLADNKDGNLS 1772


>gi|116629516|ref|YP_814688.1| hypothetical protein LGAS_0861 [Lactobacillus gasseri ATCC 33323]
 gi|282852106|ref|ZP_06261464.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
 gi|311110841|ref|ZP_07712238.1| conserved hypothetical protein [Lactobacillus gasseri MV-22]
 gi|116095098|gb|ABJ60250.1| hypothetical protein LGAS_0861 [Lactobacillus gasseri ATCC 33323]
 gi|282556866|gb|EFB62470.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
 gi|311065995|gb|EFQ46335.1| conserved hypothetical protein [Lactobacillus gasseri MV-22]
          Length = 279

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           I  I G  A        +  ++ ++ L        N+  + +++ ++ ++LQ      K 
Sbjct: 133 IAIIFGISACQAHNDTVQNEQAQSNALNNTNSKLDNLSEQNKQLMQQNKELQNAINNYKQ 192

Query: 780 QLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQ 821
             N E+L  +++  +   +  +     +++ L++ +D L   I 
Sbjct: 193 DQNKEELQ-NQLDQIKNENQQLKNNAANNQALQNQIDQLGSTID 235


>gi|308189750|ref|YP_003922681.1| hypothetical protein MFE_01830 [Mycoplasma fermentans JER]
 gi|307624492|gb|ADN68797.1| conserved hypothetical protein [Mycoplasma fermentans JER]
          Length = 3317

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQG--NVVGRV-------EEIWEEYRKLQLIHAKRKLQ 780
             +  +  ++ ++K L   LK      ++  ++       E++ +E  +L       K  
Sbjct: 511 EVKQKITQKNNEIKDLEEQLKSDPSNQDLKDKLAKTKEQQEKLVKERNELFKEINNFKNN 570

Query: 781 LNVEDLSCHKIAD--VNFMSHIISEVDSKELKSVMDA 815
           +N        + +    F++    E   KE K  +DA
Sbjct: 571 INATKKQLQNVKNKLWKFITQKAKEDKLKETKETIDA 607


>gi|290981762|ref|XP_002673600.1| predicted protein [Naegleria gruberi]
 gi|284087185|gb|EFC40856.1| predicted protein [Naegleria gruberi]
          Length = 818

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +  +K  A  LK    ++  +++++  +  + +     ++ QL     +  ++ D     
Sbjct: 691 EALVKENAE-LKKENEDLKQQLQKLKAQMIEREKEMVDKEDQLKKAQFASKELTDCKKYI 749

Query: 799 HIIS------EVDSKELKS 811
             +S       VD   LK 
Sbjct: 750 ENMSLKLIELGVDPNTLKQ 768


>gi|124005417|ref|ZP_01690258.1| two-component hybrid sensor and regulator, putative [Microscilla
           marina ATCC 23134]
 gi|123989239|gb|EAY28817.1| two-component hybrid sensor and regulator, putative [Microscilla
           marina ATCC 23134]
          Length = 799

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 43/152 (28%), Gaps = 7/152 (4%)

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                       +      S   +  G  SS L    HV  T +        +     G 
Sbjct: 602 RMFGVKDKVDMIDRMPDSYSPNEQADGQRSSELLKA-HVKKTLDTGATIFEWQYETIQG- 659

Query: 721 RRIEAITGQRARSHLMGQD-EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
             I A     A      +    +    + LK  +  +  + +E+ +  R LQ    +  +
Sbjct: 660 ETINAEVQMNAFDLGKKRMIMVVNRNVNLLKSQELELKNKADELRKAERDLQKSIDQLVV 719

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
                     ++ ++        E  +KE++ 
Sbjct: 720 TQEKLRTKDQEVEEIKLQ----EEEKAKEIRE 747


>gi|118381947|ref|XP_001024133.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila]
 gi|89305900|gb|EAS03888.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila SB210]
          Length = 2199

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 729  QRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            Q A + L  Q    + ++K L   LK ++  +    E +    ++L+        +  + 
Sbjct: 1093 QNAINKLSEQQTQSEAEIKQLQEKLKDTEELLASAKENLQNSQKELEQSQESLSQKQKLY 1152

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSV---MDALQKKIQS 822
            D     +      +  I+ ++ KE+  +   +++L+++ +S
Sbjct: 1153 DEEHELVQKK---AEQITNLE-KEISKLNEDLESLKQEHKS 1189


>gi|322386218|ref|ZP_08059851.1| beta-N-acetylhexosaminidase [Streptococcus cristatus ATCC 51100]
 gi|321269798|gb|EFX52725.1| beta-N-acetylhexosaminidase [Streptococcus cristatus ATCC 51100]
          Length = 1199

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYRKLQLIHA--K 776
           +EAI    A  +      +LK     ++    N+       + ++  E +  +      +
Sbjct: 521 LEAIPSDLAAKYTEESIARLKEAEKAVRALDENLSRAQQGTINQLVAELKAARENLKPTE 580

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQSGIIMLVGISK 832
              ++  +     K+A    +S           +LK ++D   +   S + +LVG   
Sbjct: 581 AYQKILDKQAEREKVAKNKVISIDAGRKYFSLDQLKRIVDKTSELGYSDLHLLVGNDG 638


>gi|289577486|ref|YP_003476113.1| SMC domain protein [Thermoanaerobacter italicus Ab9]
 gi|289527199|gb|ADD01551.1| SMC domain protein [Thermoanaerobacter italicus Ab9]
          Length = 1177

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-------EEYRKLQLIHAKRKLQL 781
           + A      + E+LK+L    +     +  ++  +        +E   +Q    ++K + 
Sbjct: 452 EEAIKRQQKEHERLKNLIKQKEEEIQALEEKIRNLEGHMPPTSDELLIMQQQLEEQKSKF 511

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQ 821
                +     ++  +   IS++  K   ++K + D ++ K +
Sbjct: 512 LEAKENDELRQNIKGILDEISDLKGKLKEQIKKLEDDIKTKSK 554


>gi|126466134|ref|YP_001041243.1| hypothetical protein Smar_1243 [Staphylothermus marinus F1]
 gi|126014957|gb|ABN70335.1| hypothetical protein Smar_1243 [Staphylothermus marinus F1]
          Length = 305

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE--KLKSLASFLKVSQG 754
             +    +  +L +  E+ I   I+R+E +   +A      ++E  +++++ + LK+   
Sbjct: 126 ERLEWIQQTRILSVEEENQIIKKIQRLEELL-DKALQIKKEKNEYLEIRAMITSLKLQIN 184

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS-----KEL 809
            +  ++  I E    L       + Q+   +     I +   ++     V+S      EL
Sbjct: 185 ELKDKINNISENISTLDEKIRSLRQQIEELNKQVEDINEE--IAKRQERVNSLSKQINEL 242

Query: 810 KSVMDALQKKIQSGI 824
              ++ L+++ Q  +
Sbjct: 243 IEKLNNLREEYQKTV 257


>gi|319957464|ref|YP_004168727.1| capsular exopolysaccharide family [Nitratifractor salsuginis DSM
           16511]
 gi|319419868|gb|ADV46978.1| capsular exopolysaccharide family [Nitratifractor salsuginis DSM
           16511]
          Length = 780

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 15/106 (14%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVV------------GRVEEIWEEYRKLQLIHAKR 777
            A   L   D +LK+LA  LK+S  N+              +VE + +E  + +   A  
Sbjct: 259 EAEKTLEFIDSQLKTLAENLKISAANLERFQRKNKTIDIDKKVERLSKELGEYEAQLATL 318

Query: 778 KLQLNVEDLSCHKI-ADVNFMSHIIS--EVDSKELKSVMDALQKKI 820
           +LQ ++ D    K+    N  +  ++   V+   L  ++  L++ I
Sbjct: 319 QLQGDILDSMLKKVRKGKNLETLTLAGLGVEDDSLAGIIGNLREAI 364


>gi|289622727|emb|CBI50996.1| unnamed protein product [Sordaria macrospora]
          Length = 1436

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 9/154 (5%)

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N      L  +    +  + +      L     +    +  ++    G            
Sbjct: 626 NTTYEATLAKLKEETSAAEDLQKRIQELEAEAKDKEATIAQLKDTTTGSDELQKRIDELS 685

Query: 700 SSTGEIMLLYIVSESSIRAG---IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           + + +        +  + A     +RI+ +T          ++  +  L   L  +   +
Sbjct: 686 NDSKDNEATITQLKEEVAAAEELQKRIQELT-----EEAKTKEATIAKLQEDL-AATAEL 739

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
             RV+E+ EE ++ +    K K +    D    K
Sbjct: 740 QKRVDELTEEAKEKEATIEKLKEEHKAADDHHQK 773


>gi|212547197|ref|XP_002153751.1| hypothetical protein PMAA_102780 [Penicillium marneffei ATCC 18224]
 gi|210064407|gb|EEA18504.1| hypothetical protein PMAA_102780 [Penicillium marneffei ATCC 18224]
          Length = 285

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 7/58 (12%), Positives = 22/58 (37%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              L  ++++L   +  LK  +  +    E++ ++  +L+    + +       L   
Sbjct: 150 YEALEQENKRLNQESHQLKKDKEQLQKDKEQLQKDKEQLRKNKEQLQKDKKQLQLQIQ 207


>gi|146322461|ref|XP_750269.2| eukaryotic translation initiation factor 3 subunit EifCa, putative
           [Aspergillus fumigatus Af293]
 gi|238685472|sp|Q4WJQ1|EIF3A_ASPFU RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 110 kDa subunit homolog; Short=eIF3
           p110; AltName: Full=Translation initiation factor eIF3,
           p110 subunit homolog
 gi|238688161|sp|B0XP13|EIF3A_ASPFC RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 110 kDa subunit homolog; Short=eIF3
           p110; AltName: Full=Translation initiation factor eIF3,
           p110 subunit homolog
 gi|129557028|gb|EAL88231.2| eukaryotic translation initiation factor 3 subunit EifCa, putative
           [Aspergillus fumigatus Af293]
 gi|159130743|gb|EDP55856.1| eukaryotic translation initiation factor 3 subunit EifCa, putative
           [Aspergillus fumigatus A1163]
          Length = 1051

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/99 (11%), Positives = 40/99 (40%), Gaps = 8/99 (8%)

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-----IHA 775
           RR+     + A +  + + ++ +     ++  Q     + + + +E R+ +         
Sbjct: 607 RRVLIEKKKEAATDALQRKQREEETRKRIRNQQLQEAEK-QRLLDEQREREKKRLRDEQE 665

Query: 776 KRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
           + + Q   + L   K  +  ++     + ++D+  L+++
Sbjct: 666 RIRQQELKKQLEELKSGVKGIDISEIDLEDLDANRLRAI 704


>gi|110800356|ref|YP_696566.1| hypothetical protein CPF_2138 [Clostridium perfringens ATCC 13124]
 gi|110675003|gb|ABG83990.1| hypothetical protein CPF_2138 [Clostridium perfringens ATCC 13124]
          Length = 451

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            ++L  + E+LKS  + LK ++      VE++ +E ++++  +A+    + +       +
Sbjct: 170 IANLKKEIERLKSENNSLKSAKDKNSHEVEKLSKELKEVKSNNAELNKTIEISRNKEKNL 229

Query: 792 -ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             ++N +    + V+ KEL+     L++K  S    L  I  E K ++
Sbjct: 230 SNEINNLKSKNNNVE-KELR----DLKEKNNS----LSSIVTEAKKNL 268


>gi|6606211|gb|AAF19114.1|AF143460_1 BdrC2 [Borrelia hermsii]
          Length = 249

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 732 RSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR------KLQLNVE 784
             +L       L+ + + LK    ++  +++ +  E +        +       L + ++
Sbjct: 44  IEYLETTFNLKLEKVEASLKSDIKDLDNKIDNVRNELKSDIKDLDNKIDTVENNLNIKID 103

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           ++     +D+  + + I  V++  L   +D ++ +++S I
Sbjct: 104 NVRNELKSDIKDLDNKIDTVENN-LNIKIDNVRNELKSDI 142



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              + K+ ++ + LK    ++  +++ +  E +        +     VE+    KI +V 
Sbjct: 125 NNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNKID--TVENNLNIKIDNVK 182

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGI 824
                  + D K+L + +D ++ +++S I
Sbjct: 183 ----NELKSDIKDLDNKIDNVRNELKSDI 207


>gi|300765878|ref|ZP_07075852.1| phage tail tape measure protein [Listeria monocytogenes FSL N1-017]
 gi|300513455|gb|EFK40528.1| phage tail tape measure protein [Listeria monocytogenes FSL N1-017]
          Length = 1678

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 35/174 (20%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI----WEEYRKLQ------ 771
           R+ A +G  ++     +       AS  K         ++ +    +EE RK++      
Sbjct: 814 RLVA-SGAVSKDVASAKKHTNNETASINKADIKKNTEELKRLEKSRFEEQRKIEENAAGA 872

Query: 772 ----LIHAKRK--LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                 +AK+K       E     +I      +  +SE      K   +  +K+ +   I
Sbjct: 873 ILKIKENAKKKGVKLSKEEKAEIEQINKDKVTAIQVSESTYS--KKSAEIQKKQRKEATI 930

Query: 826 MLVGISKEKKASV--------------LIVVTEDLLDRFNAVDLARLSAKVLGG 865
            L   +KE+K  +                 V ++   + NA    + + K    
Sbjct: 931 ALSKSAKEQKIILGNLENSKSEMSAKAAASVVKNSAKQRNAT--VKEANKEFKD 982


>gi|12324587|gb|AAG52248.1|AC011717_16 unknown protein; 70672-76070 [Arabidopsis thaliana]
          Length = 918

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+  E+  L       +    R++ A+T +R    L  +  K    A+ LK     ++ +
Sbjct: 391 SNEAEVESLREEYHQRVATLERKVYALTKER--DTLRREQNKKSDAAALLKEK-DEIINQ 447

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
           V    EE  K Q     +  +L  +     +  +   +   +   ++K
Sbjct: 448 VMAEGEELSKKQAAQEAQIRKLRAQIREAEE--EKKGLITKLQSEENK 493


>gi|75906733|ref|YP_321029.1| hypothetical protein Ava_0510 [Anabaena variabilis ATCC 29413]
 gi|75700458|gb|ABA20134.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 583

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 32/86 (37%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
               + L+   + LKV+  +++ + E I     +LQ      +    +   S + +    
Sbjct: 267 KQAQDSLQQQTAQLKVNTNSLIAKEEHIRFVKEQLQSQDTLYQQVNFLAASSGNAVPSQK 326

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQ 821
                +  +   EL+ ++  L  K+ 
Sbjct: 327 LDVQALENMPLDELQKIVQDLIDKLG 352


>gi|39942936|ref|XP_361005.1| hypothetical protein MGG_03548 [Magnaporthe oryzae 70-15]
 gi|145009889|gb|EDJ94545.1| hypothetical protein MGG_03548 [Magnaporthe oryzae 70-15]
          Length = 1645

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R+E    +R +  L  +D  L+ L   L   +  +  R+E++ +E   L+  +  +   +
Sbjct: 270 RLEI---ERLQQALEEKDAGLEDLQQKLDQGEKEL-DRIEKLQDEIGDLEADNRAKDQLI 325

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
              +    +I D+        +      + +++
Sbjct: 326 GQHED---EIEDLKLRIQAAEDKAKDSQRRMVE 355


>gi|26345470|dbj|BAC36386.1| unnamed protein product [Mus musculus]
          Length = 144

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 714 SSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             +   +  +E ++ Q     SH    ++ ++ L   LKV +  +  R+++  +  R+LQ
Sbjct: 13  ERLHKRVTELECVSSQANAVHSHKTELNQTVQELEETLKVKEEEI-ERLKQEIDNARELQ 71

Query: 772 LIHAKRKLQLNVEDLSCHKIAD 793
                   +L   ++    +  
Sbjct: 72  EQRDSLTQKLQEVEIRNKDLEG 93


>gi|2204269|emb|CAA97648.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 1162

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHK 790
             L  +   L  +   LK    N+   +    +E     LQL   + ++QL   +LS  +
Sbjct: 268 QLLEKERSILDDIKLSLKDKTKNISAEIIRHEKELEPWDLQLQEKESQIQLAESELSLLE 327

Query: 791 IADVNFMSHIISEVDSK---------ELKSVMDALQKKIQS 822
                 +   +  ++ K         EL+ ++  L+KK+ S
Sbjct: 328 ETQAK-LKKNVETLEEKILAKKTHKQELQDLILDLKKKLNS 367


>gi|332158235|ref|YP_004423514.1| putative ss-DNA-specific exonuclease recj related protein
           [Pyrococcus sp. NA2]
 gi|331033698|gb|AEC51510.1| putative ss-DNA-specific exonuclease recj related protein
           [Pyrococcus sp. NA2]
          Length = 475

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 92/289 (31%), Gaps = 21/289 (7%)

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
                +  +   +   + ++G  +    +R ++      T    + +    N  I +   
Sbjct: 164 GDMQENDGIFHGMNLDIIEDGKSLGILEVRKELRLFGRETRPLYQMLAYATNPEIPEITG 223

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTHVSSTGE 704
              R M                   +  + +     +     G     +         G+
Sbjct: 224 DERRAMEWLRNKGFNPEKRYWELSEEEKKRLHDLLVIHMIKHGAEKEDID-----KLIGD 278

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +++  +  E   R   R  E  T   A   L      + +L   + +       +  ++ 
Sbjct: 279 VVISPLYPEGDPRHEAR--EFATLLNATGRLN-----MGNLGVAVCMGDEEAYKKAVKMV 331

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           EEY++ Q+   K  +Q   +++   +   V ++   I +       S+            
Sbjct: 332 EEYKREQIEARKWLIQNWDKEVWEGENVYVLYVGRNIRDTLVGIAASMAINAGLANPEKP 391

Query: 825 IMLVGISKEKKASVLIVVT----EDLLDRFNAVDLARLSAKVLGGGGGG 869
           +++     ++  ++L        + L   ++  +  + +++++GG GGG
Sbjct: 392 VIVFA-DTDENPNLLKGSARTTEKALKKGYHLGEALKKASEIVGGEGGG 439


>gi|311244127|ref|XP_003121325.1| PREDICTED: protein QN1 homolog [Sus scrofa]
          Length = 1544

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 26/141 (18%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            TGE +    + E + +  I R+     Q+         E L   A  LK +       +E
Sbjct: 971  TGEKLYEIKILEETHKQEISRL-----QKRLQWYAENQELLDKDAFRLKEANEE----IE 1021

Query: 762  EIWEEYRKLQLI----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            ++  E  KL+        ++K++L  +     KI D+      +  +           L+
Sbjct: 1022 KLKLEVEKLKAESGNPSIQQKIRLKEKAADAKKIQDLERQVKEMEGI-----------LK 1070

Query: 818  KKIQSG--IIMLVGISKEKKA 836
            ++  +    ++L   +     
Sbjct: 1071 RRYPNSLPALILAASAAGDTV 1091


>gi|301614754|ref|XP_002936852.1| PREDICTED: STE20-like serine/threonine-protein kinase [Xenopus
            (Silurana) tropicalis]
          Length = 1329

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              A+     QD++     + LK  +  V+  VE+     ++L+    KRK +   +    
Sbjct: 996  DEAKRIKGEQDKEYSKFQNVLKNRKKEVINEVEKAA---KELRKELMKRKKEELAQSQHA 1052

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             +     F+     E+D   LK ++   + ++ +
Sbjct: 1053 QEQE---FVQKQQQELDG-SLKKIIHQQKTELAN 1082


>gi|281349010|gb|EFB24594.1| hypothetical protein PANDA_020783 [Ailuropoda melanoleuca]
          Length = 1384

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 26/144 (18%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
             +TGE +    + E + +  I R+     Q+         E L   A  LK +      
Sbjct: 809 AHATGEKLYEIKILEETHKQEISRL-----QKRLQWYAENQELLDKDAVRLKEANEE--- 860

Query: 759 RVEEIWEEYRKLQLIHAK----RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
            +E++  E +KL+         +K++L  +     KI D+      +  +          
Sbjct: 861 -IEKLRLEVKKLKAESGNPSIPQKIRLKEKAADAKKIQDLERQVKEMEGI---------- 909

Query: 815 ALQKKIQSG--IIMLVGISKEKKA 836
            L+++  +    ++L   +     
Sbjct: 910 -LKRRHPNSLPALILAASAAGDTV 932


>gi|238897590|ref|YP_002923269.1| peptidase, M23 family domain protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465347|gb|ACQ67121.1| peptidase, M23 family domain protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 445

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
             +   + +    K  Q     R  ++  + +K +    K K  L +   + +KI +   
Sbjct: 79  QLETLQQEIEKKEKTVQEKQKKR-HQLLSQLKKQEKEIEKLKRTLALSKNAINKINEE-- 135

Query: 797 MSHIISEVDS--KELKSVMDALQKKIQ 821
           ++     +D+    LK+    L +++ 
Sbjct: 136 ITEFSESIDALKNSLKAQQLMLAQQLD 162


>gi|224049838|ref|XP_002193607.1| PREDICTED: similar to mitochondrial tumor suppressor 1 isoform 1
           [Taeniopygia guttata]
          Length = 442

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK------LQLNVEDL 786
                + E L+     LK    ++  +++   EE +++    A  K      L+  +E L
Sbjct: 257 DSFKEKQELLEKKIDELKSENNSLSEKLK--LEEQKQIAKEKANLKNPQIMYLEQELESL 314

Query: 787 SCH-KIADVNFMSHIISEVDSKELKS----VMDALQK 818
               +I +       I  +  ++L      +MD L+K
Sbjct: 315 KAVLEIKNEKLHQQDIKLMKMEKLVENNTILMDKLKK 351


>gi|167394499|ref|XP_001740989.1| polyamine-modulated factor 1-binding protein [Entamoeba dispar
           SAW760]
 gi|165894634|gb|EDR22555.1| polyamine-modulated factor 1-binding protein, putative [Entamoeba
           dispar SAW760]
          Length = 539

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              ++ + ++++     +K     V   + E   E +++     + K +    +      
Sbjct: 231 LDDIVKERQEVEETLQKIKTRIEKVEDYISEGKNELKEMIKEKEELKRKQRSLERQ---- 286

Query: 792 ADVNFMSHIISEVDSKE 808
                +   + ++D+ +
Sbjct: 287 ---KVIREKVKDIDAND 300


>gi|148992707|ref|ZP_01822350.1| pneumococcal surface protein A [Streptococcus pneumoniae SP9-BS68]
 gi|147928433|gb|EDK79448.1| pneumococcal surface protein A [Streptococcus pneumoniae SP9-BS68]
          Length = 746

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + L   +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 236 IEAKLNKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 289

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARL 858
            + EL++ +  L+K+I +  I+L G   E         T  L ++  A   +LA+ 
Sbjct: 290 KADELQNKVADLEKEISNLEILLGGADPEDD-------TAALQNKLAAKQAELAKK 338


>gi|123480163|ref|XP_001323236.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121906097|gb|EAY11013.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2458

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +  +  +  ++  ++ +   L+  + + + + ++  EE  KLQ    K+K  ++  +   
Sbjct: 1744 ENLKKQIEEKEADIEEITEELEQLRKDSITKAKQDQEEIEKLQNEIQKQKEIIDNLNAEI 1803

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQK 818
             ++ +         E + ++LK  +  L+K
Sbjct: 1804 DELGE--------KEAEHEDLKDELQQLRK 1825


>gi|124806042|ref|XP_001350611.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
 gi|23496736|gb|AAN36291.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
          Length = 711

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/280 (8%), Positives = 73/280 (26%), Gaps = 9/280 (3%)

Query: 521 YAEAGGQ-LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           Y+  G   + +      D   L     +     IF     ++ G +  +    +      
Sbjct: 60  YSTNGNMNVNEFVKMCYDYNLLPKYKYKDILCYIFRLSKSLKVGYIEYKHFFQVLERLSA 119

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI--TSAELKSIED 637
                +  +     +  +  +    +    +      +       K    T+A     + 
Sbjct: 120 FLFRKLIMTEQEKFNVLIKHLTCQKIVHEKATKERYSVGIQTHVKKECKGTNAVCDMRDK 179

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
                +          M+  +                   + +   +D     +      
Sbjct: 180 CCGTFVEVKDRGTMTEMDDVNYYDKKEDIKKNIDILKDNIIYNDHNDDLNNTLNDGDN-- 237

Query: 698 HVSSTGEIMLLYIVSESSIRA-GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           H ++  +         + + +     I     +   + L   D+K   + +  K +   +
Sbjct: 238 HNANILKSHASSKQYTNKMNSINSDDITNKLKEEISNALKIIDDKNMEIENIYKKNLEQI 297

Query: 757 V---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
                ++ ++ EE +KLQ        +   + ++   I +
Sbjct: 298 EIEREKINQLQEEIKKLQNEKNDLIKKHENKKINDKDIKN 337


>gi|312371894|gb|EFR19963.1| hypothetical protein AND_20868 [Anopheles darlingi]
          Length = 1497

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 733 SHLMGQDEKLKSLASFLK-----VSQGNVVGRVEEIWEEYRKLQLIHAKRKL----QLNV 783
             +   D+  + L    K      S   +  R++E+ EE RKL+    + K     + + 
Sbjct: 92  QLMAKLDDLRQKLEHSEKQDAKPSSNDELTERLKELEEENRKLEQDLIRAKASPPSKADP 151

Query: 784 EDLSCHKIADVNFMSHIISEVDSKEL 809
                  I  +      + E+++K L
Sbjct: 152 NGREEKLIRKLKLYKAKVQEINAKLL 177



 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 39/111 (35%), Gaps = 18/111 (16%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH----- 789
           L    E    L+         +  +VE++ +   + +    +++ +L       +     
Sbjct: 601 LSKITELQDKLSHVESTDMLPLKQKVEQLQQSVVEKEAELERQREELATMKDRSNISFDA 660

Query: 790 -----------KIADVNFMSHIISEVDSKE--LKSVMDALQKKIQSGIIML 827
                      ++ DV  M  +    + K   L+S+   L+KK+    ++L
Sbjct: 661 QSDVMSTSTISRVEDVARMRELDEGFEEKYIKLRSLALKLKKKVAEQTVLL 711


>gi|297821329|ref|XP_002878547.1| hypothetical protein ARALYDRAFT_481003 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297324386|gb|EFH54806.1| hypothetical protein ARALYDRAFT_481003 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1061

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--LNVEDL 786
                 L   +E+L +  S L  S       V+E+ ++ +  ++ + K KL+   NVE+ 
Sbjct: 708 NELHEKLHLLEERLSNQKSTLSCSDAVTEEYVDELKKKVQSQEIENNKLKLEHVQNVEEK 767

Query: 787 SCHKIADVNF-----MSHIISEVDSKELKSVMDALQK 818
           S  ++ +         +  ++   + ELK++ D + K
Sbjct: 768 SGLRVQNQKLAEEASYAKELASAAAIELKNLADEVTK 804


>gi|257885297|ref|ZP_05664950.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257821149|gb|EEV48283.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,501]
          Length = 645

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 10/167 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA HL+  A+  +  +     G  I              +T+ +L +IE  +  I+ +N
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKEN 132

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LP+  R++++++A+   A+     +    +    +     G     LC G HV STG I 
Sbjct: 133 LPIERRVLSKQEALEIFASDPYKVELISELPEEVITAYQQGEF-IDLCRGPHVPSTGRIQ 191

Query: 707 LLYI-------VSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKS 744
           +  +          +S    ++R+   A   ++A    +   E+ K 
Sbjct: 192 VFKLLSVAGAYWRGNSNNQMMQRVYGTAFFDKKALKEYIRLREEAKE 238


>gi|33866772|ref|NP_898331.1| hypothetical protein SYNW2242 [Synechococcus sp. WH 8102]
 gi|33639373|emb|CAE08757.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 295

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 737 GQDEKLKSLASFLKVSQGN-------VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            +D  L   +  +K S          +  R++++ +E ++L+      K      + +  
Sbjct: 214 EKDASLTDYSKLVKKSIKQSEFKLSQMPARIKKLQQENKELEEKLDALKEAAKGPEEAKA 273

Query: 790 KIADVNFMSH 799
            I  +   + 
Sbjct: 274 YIEKIRATAQ 283


>gi|291231042|ref|XP_002735487.1| PREDICTED: hCG21972-like [Saccoglossus kowalevskii]
          Length = 397

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 6/61 (9%), Positives = 23/61 (37%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +     L  +++ L      LK +   +  + +++ +E +  +    +++ +    D   
Sbjct: 250 ELVTKKLSSENQSLSQTTESLKSTLNRIEEKTKQLVDEKKNTEKRLKEKEREAKALDEEK 309

Query: 789 H 789
            
Sbjct: 310 K 310


>gi|145513762|ref|XP_001442792.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410145|emb|CAK75395.1| unnamed protein product [Paramecium tetraurelia]
          Length = 925

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           Q  +++ L+  L  +   +  RV      + +E ++LQ    +++ +    +    ++  
Sbjct: 747 QQLQIQELSMQLNNAIQEL-ERVTAEYNGLQKENKRLQKQLEEKQSEAKQNEFMIERV-- 803

Query: 794 VNFMSHIISEVDSK 807
           V      + +++ K
Sbjct: 804 VQLSDKQLDDLEGK 817


>gi|123429257|ref|XP_001307666.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121889308|gb|EAX94736.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 1677

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 735 LMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           L   ++    L++ L     N      ++E++ E+ ++L+ +  + +    V      K 
Sbjct: 126 LKKAEKNNMDLSNDLSTLIENTHDESEKIEDLQEKVKELETLKKQLEESEKVILEEGEKN 185

Query: 792 ----ADVNFMSHIISE-VDSKELKSVMDAL 816
                + N +   +S   ++ +L++ MD L
Sbjct: 186 QLLENETNNLKQQLSNSKNNSDLQNAMDEL 215


>gi|268580031|ref|XP_002644998.1| C. briggsae CBR-LAM-2 protein [Caenorhabditis briggsae]
          Length = 1633

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              + A   + G ++  K +A  LK  Q  +   +       R L L   ++K      +L
Sbjct: 1230 ANKEASDAIYGGEQISKQIAE-LKEKQNQINESIS------RTLDLAEEQKKTADEANNL 1282

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +   ++  N  +  I  VD KELK+ +  + ++ ++ +
Sbjct: 1283 AA--VSLTNVEAVKIPSVDPKELKNDVAGVLEEAENLV 1318


>gi|296212494|ref|XP_002752855.1| PREDICTED: early endosome antigen 1 [Callithrix jacchus]
          Length = 1411

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---QLIHAKRKLQLNVEDLSC 788
            R+ +  Q++ ++ L +     + +   + +++ E+ + L   Q   + ++ +L  E    
Sbjct: 1067 RNQIGNQNKLIQELKTAKAALEQDSAKKEQQLQEQSKALQDIQKEKSLKEKELVNEKSKL 1126

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             +I ++            KE+  + + L+   Q  +
Sbjct: 1127 AEIEEIKCRQE-------KEITKLSEELKSHKQESV 1155



 Score = 37.8 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L    EK K  +  LK+   ++  ++ +     ++ +    + +  +N    S  +  
Sbjct: 913 KELKKSLEKEKEASHQLKLELNSIQEQLIQAQNTLKQKEKEEQQLQGSINELKQSSEQKK 972

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
                   I  +   ELK + D  + +++S +
Sbjct: 973 ------KQIEALQG-ELK-IADLQKTELESKL 996


>gi|256821194|ref|YP_003142393.1| copper amine oxidase domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256799174|gb|ACV29828.1| copper amine oxidase domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 527

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            S L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +KI
Sbjct: 49  ISDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGEKLKQEKAKLEEEIRDKD---NKI 105

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 106 AQLNKEIEDLKNSNNDELIAEITQLKDELK 135


>gi|224437043|ref|ZP_03658024.1| chaperonin GroEL [Helicobacter cinaedi CCUG 18818]
 gi|313143514|ref|ZP_07805707.1| chaperonin [Helicobacter cinaedi CCUG 18818]
 gi|313128545|gb|EFR46162.1| chaperonin [Helicobacter cinaedi CCUG 18818]
          Length = 547

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 30/144 (20%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKE 808
           K    +V  R+ +I  E       + + KLQ  +  LS      V  +     SEV+ KE
Sbjct: 335 KGKAKDVKDRIAQIKMEIENTTSDYDREKLQERLAKLS----GGVAVIKVGAPSEVEMKE 390

Query: 809 LKSVMDAL----QKKIQSGIIMLVGIS---KEKKASVLIVVTEDL--------------- 846
            K  +D      +  ++ GI+   G++     KK ++ +   E +               
Sbjct: 391 KKDRVDDALAATKAAVEEGIVAGGGVALIHAAKKVNLKLSGDEAIGYDIIKRAIKAPLAQ 450

Query: 847 ---LDRFNAVDLARLSAKVLGGGG 867
                 ++A  +     +V G GG
Sbjct: 451 IATNAGYDAGVVVNKVQEVEGSGG 474


>gi|182626125|ref|ZP_02953885.1| hypothetical protein CJD_2464 [Clostridium perfringens D str.
           JGS1721]
 gi|177908562|gb|EDT71087.1| hypothetical protein CJD_2464 [Clostridium perfringens D str.
           JGS1721]
          Length = 451

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            ++L  + E+LKS  + LK ++      VE++ +E ++++  +A+    + +       +
Sbjct: 170 IANLKKEIERLKSENNSLKSAKDKNSHEVEKLSKELKEVKSNNAELNKTIEISRNKEKNL 229

Query: 792 -ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             ++N +    + V+ KEL+     L++K  S    L  I  E K ++
Sbjct: 230 NNEINNLKSKNNNVE-KELR----DLKEKNNS----LSSIVTEAKKNL 268


>gi|118356201|ref|XP_001011359.1| hypothetical protein TTHERM_00431340 [Tetrahymena thermophila]
 gi|89293126|gb|EAR91114.1| hypothetical protein TTHERM_00431340 [Tetrahymena thermophila SB210]
          Length = 1759

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 38/86 (44%), Gaps = 12/86 (13%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVV-------GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
              +L  Q E+ K     + V   +++        ++  + E+ + LQ  +A+ + Q+ V 
Sbjct: 995  IKNLNIQIEQEKESCEQINVQNEDLIKQGEKHQEQISNLEEQLKLLQKKNAQYQQQIQVF 1054

Query: 785  DLSCHKIAD-----VNFMSHIISEVD 805
            + S ++  +     +N +   + +V+
Sbjct: 1055 EASSNEENNELCSKLNQLQQNLDDVN 1080


>gi|193216192|ref|YP_001997391.1| modD protein [Chloroherpeton thalassium ATCC 35110]
 gi|193089669|gb|ACF14944.1| modD protein [Chloroherpeton thalassium ATCC 35110]
          Length = 286

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           + E   +   L++   ++K+ + V+ +    ++A+         ++ + +L   +  L+ 
Sbjct: 174 LSEFLHQLEALKIECKEKKIGIEVDNEAQAFEVAEAGVDMVQFDKIPANDLTKTVSNLKA 233

Query: 819 KIQSGIIMLVGISKEKKA 836
           K  S  I   G    +  
Sbjct: 234 KYPSLQIAAAGGINGENV 251


>gi|166796059|ref|NP_001107755.1| aminoacyl tRNA synthase complex-interacting multifunctional protein
           1 [Sus scrofa]
 gi|164598078|gb|ABY61326.1| small inducible cytokine subfamily E member 1 [Sus scrofa]
          Length = 320

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR--VEEIWEEYRKLQLIHAKRKL--- 779
             T       L  +  +   +  +LK     +  +  ++    E +KL++ +AK K    
Sbjct: 10  MATSDAVLKRLEQKGAEADQIIEYLKQQVAILKEKAVLQATLREEKKLRVENAKLKKEIE 69

Query: 780 QLNVEDLSCHKIADVNFM 797
           +L  E +       V  +
Sbjct: 70  ELKQELIKAEIQNGVKQI 87


>gi|157821387|ref|NP_001101556.1| early endosome antigen 1 [Rattus norvegicus]
 gi|149067114|gb|EDM16847.1| early endosome antigen 1 (predicted) [Rattus norvegicus]
          Length = 1411

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 13/110 (11%)

Query: 724  EAITGQRARS-HLMGQDEKLKSLASFL-------KVSQGNVVGRVEEI--WEEYR-KLQL 772
            E    + A    L  ++E LK  +  L        V +  +V    ++   EE + + + 
Sbjct: 1079 ELQAAKAALEQDLAKKEEVLKEQSKALQDAQREKSVKEKELVTEKSKLAEMEEIKCRQEK 1138

Query: 773  IHAKRKLQLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              AK K +L   +  S  ++ ++     ++ +    EL+  +D+L+  ++
Sbjct: 1139 EIAKLKEELKSHKQESIKEVTNLKDAKQLLIQQKL-ELQGKVDSLKAALE 1187


>gi|54295973|ref|YP_122285.1| hypothetical protein plpp0131 [Legionella pneumophila str. Paris]
 gi|53755805|emb|CAH17308.1| hypothetical protein plpp0131 [Legionella pneumophila str. Paris]
          Length = 224

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 31/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +++ + VS  +  ++F +T  ++ +GGQ  DT    G  +     +       +   H +
Sbjct: 13  QLMTKVVSVNENRLLFAETIGFSFSGGQESDTVRVNGLMVTHSEIEDDLIYYTLPSEHGL 72

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E         +++ ID+  R +L   H A  L+   +  +L   + + G+ I     R 
Sbjct: 73  SE------GDVVLMEIDFVRRYKLMRLHFAAELILELVQRMLP--IEKIGAHIAEHKARI 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D ++          +I D  + ++ +   ++ + M      +             + R  
Sbjct: 125 DFSY--------QHNISDIFDSLLFEYNQIIAKDMLIRTGFSDE---------KSQRRYW 167

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            +E           CGGTHV ST E+  + +    +I +G  RIE
Sbjct: 168 EIEGFSN-----VSCGGTHVQSTVEVGFITLKRV-NIGSGKERIE 206


>gi|320353056|ref|YP_004194395.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
 gi|320121558|gb|ADW17104.1| membrane protease FtsH catalytic subunit [Desulfobulbus propionicus
           DSM 2032]
          Length = 611

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 85/322 (26%), Gaps = 16/322 (4%)

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS--GQKVEV 513
           +  G++   G   +    +     P +         V   V   +  E+ +   G+K ++
Sbjct: 283 EMDGFEGNDGVIIIAATNRPDVLDPALLRPGRFDRQVVVPVPDVKGREKILEIYGKKTKL 342

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
             D        G                 +   ++  E +        +  +        
Sbjct: 343 AADVDMAVIARGTPGFSGADLENLINEAALMAAREGKEEVDAAQLERAKDKVMMGAERKS 402

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            I     ++++  H A H L      +L      +   I P G    +T   P+      
Sbjct: 403 MIISPREKEITAYHEAGHALVA---RLLPGTDPIHKVTIIPRGRALGLTMQLPMDEKYTH 459

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           +    +N I       V   +  ++        +       R  V      D     +  
Sbjct: 460 ARGYLLNSIAILFGGRVAEKLVFDEITTGAGNDIERASELARKMVCEWGMSDELGPLAYG 519

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
               H+    EI      SE + +     I+A   Q            L      LK   
Sbjct: 520 KKEEHIFLGREIAQHRDYSEQTAQK----IDAAVKQIIVEANDKVTRLLDENRDILKAIA 575

Query: 754 GNVVGR-------VEEIWEEYR 768
             ++ R       ++ I +E R
Sbjct: 576 DELLERETIMLEDIDRIIDELR 597


>gi|301753315|ref|XP_002912507.1| PREDICTED: BRCA1-A complex subunit Abraxas-like [Ailuropoda
           melanoleuca]
 gi|281346797|gb|EFB22381.1| hypothetical protein PANDA_000251 [Ailuropoda melanoleuca]
          Length = 409

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLK--VSQGNVVGR-VEEIWEEYRKLQLIHAKRK-L 779
           E  T   +   +   +E   SL   LK    +     R VE++ ++  +L+    KRK  
Sbjct: 201 EFFTEDGSLKEVHKINEMYASLQEELKSICKKVEHSERAVEKLLKDVTRLKQEIKKRKQA 260

Query: 780 QLNVEDLSCHK 790
           Q+     +  K
Sbjct: 261 QIQAARENIEK 271


>gi|197117408|ref|YP_002137835.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
 gi|197086768|gb|ACH38039.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
          Length = 441

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 71/183 (38%), Gaps = 18/183 (9%)

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           ++  L   +  +   +   SG    L T+ +  +  V +   DG      L     V +T
Sbjct: 28  VSSLLQEYSYTIYVAEDGESGIRRALLTRPDLILLDVLMPGIDGFETCQRLKA---VEAT 84

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK--------LKSLASFLKVSQG 754
            +I ++++ + + +   +R  +A         L  ++          L+ LA  L+ +  
Sbjct: 85  RDIPVIFMTALAEMDQKVRGFDAGAVDYIIKPLQREEVLARVGVHIHLRHLAKELQETNA 144

Query: 755 NVVGRVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH--IISEVDSKE 808
           ++  RVE     +     +LQ   A+RKL      +   ++  +N      +I EV+ K 
Sbjct: 145 SLEKRVEDRTASLASTNDELQKEIAERKLAEEALAIKQEQLEALNLSLEQRVIEEVE-KN 203

Query: 809 LKS 811
           L+ 
Sbjct: 204 LQK 206


>gi|118401102|ref|XP_001032872.1| Dynein heavy chain family protein [Tetrahymena thermophila]
 gi|89287217|gb|EAR85209.1| Dynein heavy chain family protein [Tetrahymena thermophila SB210]
          Length = 4222

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 730  RARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
                 +  + + LK     L+   V    V   V ++ EE  KL+  + K   + N    
Sbjct: 2879 DVIQDVEPKRKALKEATEQLEEATVKLNEVEEVVRKLNEELNKLKAENDKAIAERNAAIS 2938

Query: 787  SCHK-IADVNFMSHIISEVD------SKELKSVMDALQKKIQSGIIM 826
               +    +N    +++ +        K +  + D L+  +   ++ 
Sbjct: 2939 EAERCARRLNLAQRLVTALSSENERWGKSIIQLEDQLKLMVGDVLVA 2985


>gi|123479892|ref|XP_001323102.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121905960|gb|EAY10879.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 4057

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
              L  + E +K     LK     +  +++   EE +KL       K Q++  D    K+ 
Sbjct: 3264 DDLQQKLESIKEERENLKRENDLINKKLKSQSEELQKLNKEIDYSKSQIDSLDEVNKKLN 3323

Query: 793  DVNFMSHIISEVDSKELKSVMDALQKKIQS 822
              N       E ++K+L   ++ L  K+  
Sbjct: 3324 STN-------EQENKQLNDQINKLTTKVND 3346



 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-D 793
               + +        L+    ++  ++E I EE   L+  +     +L  +     K+  +
Sbjct: 3245 FSEKLKSSNEEKQKLQNQNDDLQQKLESIKEERENLKRENDLINKKLKSQSEELQKLNKE 3304

Query: 794  VNFMSHIISEVD 805
            +++    I  +D
Sbjct: 3305 IDYSKSQIDSLD 3316



 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 30/59 (50%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
               +  ++ +L SL + LK     +  +++ + E+ +++   + + ++ L  + L+ ++
Sbjct: 3442 FDSVKEENLRLNSLNNELKQENEEISKKLKSLNEQIKEITNENNQDQIDLLNKKLNENE 3500


>gi|84488944|ref|YP_447176.1| ThsB [Methanosphaera stadtmanae DSM 3091]
 gi|84372263|gb|ABC56533.1| ThsB [Methanosphaera stadtmanae DSM 3091]
          Length = 538

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 75/225 (33%), Gaps = 41/225 (18%)

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            +     ++   ++       E+ I+  +  + A  G           + +  LA     
Sbjct: 245 EVDAEIRITDPAQMQAFIEQEENMIKEMVDELVA-AGANVL----FCQKGIDDLAQHYLS 299

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDS---- 806
             G +  R  +   +  KL       K+  N+EDLS   + D   ++   +S  D     
Sbjct: 300 KAGILATRRVK-KSDMEKLAKATGA-KIVTNIEDLSADDLGDAGLVAEDKVSGDDMIFVK 357

Query: 807 --KE-------LKS----VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
             K+       L+     V+D +++ ++  I ++    ++ K  V     E  + +    
Sbjct: 358 ECKDPKAVTLLLRGSTSHVVDEIERAVEDAIGVVASTVEDGKVVVGGGAPEIAIAKG--- 414

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              +  A+ +      GR  +A           +A+  V   L +
Sbjct: 415 --LKDYAETIS-----GREQLA------VTAFAEALEVVPRTLAE 446


>gi|332075798|gb|EGI86265.1| choline binding protein A [Streptococcus pneumoniae GA17570]
          Length = 741

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + L   +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 231 IEAKLNKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 284

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARL 858
            + EL++ +  L+K+I +  I+L G   E         T  L ++  A   +LA+ 
Sbjct: 285 KADELQNKVADLEKEISNLEILLGGADPEDD-------TAALQNKLAAKQAELAKK 333


>gi|326429766|gb|EGD75336.1| hypothetical protein PTSG_06985 [Salpingoeca sp. ATCC 50818]
          Length = 390

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQL--------IHAKRKLQLNVEDLSCHKIADVNFMS 798
             L+     +   + ++ +E  +LQ               L   ++ LS          +
Sbjct: 100 GALRAKSTELTEEINKLQKELEQLQRDHTSYTTYEKKAEALAKEIQALSGQLADLNALAN 159

Query: 799 HIISEVDSKELKSVMDALQKKIQSGII 825
           ++   VD  ++++ +D ++ +      
Sbjct: 160 NLNDNVDIDDVRADVDEIRARNDRDAA 186


>gi|311255167|ref|XP_003126113.1| PREDICTED: myosin-9-like [Sus scrofa]
          Length = 1808

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + ++  
Sbjct: 1073 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERAARNK 1132

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +VN +   + E ++K  ++ + 
Sbjct: 1133 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQ 1191

Query: 815  ALQKKIQSGI 824
             +++K    +
Sbjct: 1192 EMRQKHSQAV 1201


>gi|309361143|emb|CAP30235.2| CBR-LAM-2 protein [Caenorhabditis briggsae AF16]
          Length = 1646

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              + A   + G ++  K +A  LK  Q  +   +       R L L   ++K      +L
Sbjct: 1255 ANKEASDAIYGGEQISKQIAE-LKEKQNQINESIS------RTLDLAEEQKKTADEANNL 1307

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +   ++  N  +  I  VD KELK+ +  + ++ ++ +
Sbjct: 1308 AA--VSLTNVEAVKIPSVDPKELKNDVAGVLEEAENLV 1343


>gi|289615285|emb|CBI58052.1| putative SMC4/CSM1 protein [Sordaria macrospora]
          Length = 1644

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/64 (12%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              +  ++ +   +   + + +    +  ++  RVEE  E  ++ +   A  K +L+ +  
Sbjct: 1161 ASKELQNAIQETEALEEEIQNQ-GNTAESLTTRVEEAQEALKEKKKELAAMKKELDEKTA 1219

Query: 787  SCHK 790
              ++
Sbjct: 1220 ELNE 1223


>gi|242050460|ref|XP_002462974.1| hypothetical protein SORBIDRAFT_02g035580 [Sorghum bicolor]
 gi|241926351|gb|EER99495.1| hypothetical protein SORBIDRAFT_02g035580 [Sorghum bicolor]
          Length = 254

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +L+S A  LK S  ++  +++E+  E  +L+    + K +    +    
Sbjct: 139 ELRSEAKELKDSNESLQEKIKELKAEKNELRDEKQRLKAEKESLEQQIK 187


>gi|296109882|ref|YP_003616831.1| phosphoesterase RecJ domain protein [Methanocaldococcus infernus
           ME]
 gi|295434696|gb|ADG13867.1| phosphoesterase RecJ domain protein [Methanocaldococcus infernus
           ME]
          Length = 327

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 746 ASFLKVSQGNVVGRVEEIWEEYR--------KLQLIHAKRKLQLNV-EDLSCHKIADVNF 796
              LK++      R+  + ++           L+  ++KR   L     +   +   +N 
Sbjct: 158 TKHLKLANAQTFERISYLLKDISFNKILGMLNLESDYSKRTAHLKACSRMVLKEFDGLNI 217

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI-SKEKKASVLIVVTEDLLDRFNAVDL 855
               +S  ++   K+++      I + +  +V +  KE +  V     +++    +  +L
Sbjct: 218 ALSHVSSHEASCAKTLV-----SIGADLAFVVAVRKKEGEIRVSARCRKNVSRYIHLGEL 272

Query: 856 ARLSAKVLGGGGGG 869
               AK L G GGG
Sbjct: 273 MEKIAKKLNGSGGG 286


>gi|227500819|ref|ZP_03930868.1| possible surface protein [Anaerococcus tetradius ATCC 35098]
 gi|227217044|gb|EEI82411.1| possible surface protein [Anaerococcus tetradius ATCC 35098]
          Length = 281

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/91 (9%), Positives = 31/91 (34%), Gaps = 12/91 (13%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--------LNVEDLS 787
               +  K +      +   ++  + ++ +E ++LQ  +AK K             ++ +
Sbjct: 119 NKVAQLNKEIEDLKNSNNDELIAEITQLKDELKRLQDENAKLKEDYSSTKWELEAEKEKT 178

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
                 V  M   +  ++      +   +++
Sbjct: 179 DKNENKVKEMQEKLESLEG----ELAKKIKE 205



 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +K+
Sbjct: 65  IKDLENQIKDLNDKKQEDQTKIDELKEKLESCKDNGEKLKQEKAKLEEEIRDKD---NKV 121

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 122 AQLNKEIEDLKNSNNDELIAEITQLKDELK 151


>gi|225619668|ref|YP_002720925.1| threonyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|225214487|gb|ACN83221.1| threonyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 643

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 16/172 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS +HL+  A+  +  +     G  I      +D    KP T  +L  IED +  II +N
Sbjct: 72  HSTSHLMAQAVRRLYPNTQVTIGPAIKDG-FYYDFDAEKPFTEEDLPKIEDEMKKIIKEN 130

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRV----RVVSVEYEDGGVHSSALCGGTHVSST 702
           +PVV ++MN+ +A            Y   +       +V + + G     LC G HV ST
Sbjct: 131 IPVVRKVMNKNEA--IEYFKKANEPYKVEIIEGIDADTVSFYEQGDF-IDLCRGPHVPST 187

Query: 703 GEIMLLYI-------VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           G +    +           S    + RI       ++  L    +KLK    
Sbjct: 188 GYLKAYKLMSVAGSYWRGDSNNKMLSRIYGTA-FESKESLDKYLKKLKEAKE 238


>gi|322708014|gb|EFY99591.1| spindle-pole body protein (Pcp1), putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 1286

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 18/94 (19%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            RA S L    E++ + +   K     V  +V  + EE  K    +A  + +L   +   
Sbjct: 407 DRAESDLEELQEEMANKSVVTKGLSRQVEEKVSRLQEELDKSGKEYADLEKELAGANEEN 466

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +                  L++ +D L+ + Q 
Sbjct: 467 EQ------------------LRAEVDELRNEQQE 482


>gi|301770819|ref|XP_002920831.1| PREDICTED: LOW QUALITY PROTEIN: protein Daple-like [Ailuropoda
           melanoleuca]
          Length = 2027

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA----DVNFMSHIISEVDSK 807
                V RVEE+ +E  +L+  + K   ++     +  K+     +   ++     ++++
Sbjct: 622 QVKEKVERVEELEKELHRLEKENEKLAKKVASLKTATEKVDALERESRGLA-----LENR 676

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +L+  +D L    Q+  + L G+ ++ K
Sbjct: 677 KLRKSLDTL----QNVSVQLEGLERDNK 700


>gi|297474391|ref|XP_002687260.1| PREDICTED: Early endosome antigen 1-like [Bos taurus]
 gi|296487962|gb|DAA30075.1| Early endosome antigen 1-like [Bos taurus]
          Length = 1432

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---QLIHAKRKLQLNVEDLSC 788
            R+ +  Q++ ++ L +     + ++  + +++ E+ + L   Q   + ++ +L  E    
Sbjct: 1088 RNQIGNQNKLIQELKTTKTTLEQDLAKKEQQLKEQNKALQDMQKEKSLKEKELVNEKSKL 1147

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             +  ++            KE+  + + L+   Q  I
Sbjct: 1148 AETEEIKCRQE-------KEIAKLSEELKSHKQESI 1176


>gi|229596248|ref|XP_001012262.3| hypothetical protein TTHERM_00105100 [Tetrahymena thermophila]
 gi|225565514|gb|EAR92017.3| hypothetical protein TTHERM_00105100 [Tetrahymena thermophila
           SB210]
          Length = 266

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 732 RSHLMGQDEKLK---SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              L  Q+E L     ++ + K  +   + R+EE  E+ +K+     K K +      + 
Sbjct: 179 LKDLQRQEESLSSYIKISEYTKEQKQQEIKRIEEYKEQIKKINDEIEKLKEKHIQNSDNY 238

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQ 817
             I     +        ++ L+  +++L+
Sbjct: 239 STIK----LQLKEQNQKNESLRQQIESLK 263


>gi|167540080|ref|XP_001741535.1| GRIP domain-containing protein RUD3 [Entamoeba dispar SAW760]
 gi|165893951|gb|EDR22066.1| GRIP domain-containing protein RUD3, putative [Entamoeba dispar
           SAW760]
          Length = 863

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           A  +     E  K     LK     +  ++EE+ EE  K +   A++++ +     S  +
Sbjct: 493 AEENSSSLIENEKKEKEDLKHQNEELKQQIEELKEENNKKERELAEKEVVIVSLQKSSEE 552

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQK 818
                  S   S+ +  E K     ++K
Sbjct: 553 ANKKAKSSSSSSDEEENETKENGKLIKK 580


>gi|116330886|ref|YP_800604.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116124575|gb|ABJ75846.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 1231

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L GQ + L+     LKVS   +  +   +  E R  +L  AK  ++   E L      
Sbjct: 512 EELEGQTQILRQQQEELKVSNEELEEQTRAL--EMRNKELELAKNDIEQKTEQLELSGKY 569

Query: 793 DVNFMSHIISEV--DSKEL----KSVMDALQKKIQSG 823
              F++++  E+      L    K + D  +K +   
Sbjct: 570 KSEFLANMSHELRTPLNSLLILSKDLADNKKKNLDED 606


>gi|327355464|gb|EGE84321.1| spindle-pole body protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 1323

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
                +   + E LK      K S   +   ++   E+   LQ    + + +       C
Sbjct: 434 NELVENQKEEIENLKEKQQDEKSSVAELEAELQRAKEQLEDLQKSLEEARSEAREAKSKC 493

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +  +    +        ++LK + D +  K
Sbjct: 494 EEAIEEKEQAV-------EDLKELQDEMTDK 517


>gi|313212765|emb|CBY36692.1| unnamed protein product [Oikopleura dioica]
          Length = 394

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 11/97 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-WEE------YRKLQLIHAKRKLQLNVE- 784
             +  +  +LK L +  K         +E++  +E       ++L+L + K + QL    
Sbjct: 85  EVIEQELTQLKGLTTTQKDQLDEFSDSLEKLTLKEKELYIKNKELELENLKLQNQLQNSQ 144

Query: 785 -DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            DL  H++     ++  ++E D   LK  +D+L+ K+
Sbjct: 145 FDLQHHQLLCEKLVTEALNEEDR--LKGTIDSLKNKL 179


>gi|224094182|ref|XP_002192788.1| PREDICTED: centrosomal protein 290kDa [Taeniopygia guttata]
          Length = 2447

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 1/97 (1%)

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYR 768
           +  +SS++ G   +   +  R    +  ++ + +   +  LK     + GR EE+ +E +
Sbjct: 662 MQKDSSMKGGETALIIPSLDRLVHAMESKNSEGIFDASVHLKAQVDQLTGRNEELRQELK 721

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           + Q        QL   +    ++ +   + H     +
Sbjct: 722 ETQKEATSLSNQLASANEKIEQMKNEISLLHQSEGAN 758


>gi|51245762|ref|YP_065646.1| heat shock protein ClpB [Desulfotalea psychrophila LSv54]
 gi|50876799|emb|CAG36639.1| probable heat shock protein ClpB [Desulfotalea psychrophila LSv54]
          Length = 868

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 13/126 (10%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
              + +   AS L++   ++   ++++  +  KL++     K + +   +S  + +    
Sbjct: 391 KAIDLIDEAASQLRIEIDSMPTEIDQLQRKCMKLEIEQEALKKEKDSASISRLQES---- 446

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
               ++++   ELK +M      I+   I  +   KE+         E L +R  A DL 
Sbjct: 447 -KKQLADLS-DELKGLMGQW--NIERETIAGISSIKEE--IDAAQAEEQLAER--AGDL- 497

Query: 857 RLSAKV 862
           +  A++
Sbjct: 498 QKVAQI 503


>gi|66808105|ref|XP_637775.1| hypothetical protein DDB_G0286199 [Dictyostelium discoideum AX4]
 gi|60466213|gb|EAL64275.1| hypothetical protein DDB_G0286199 [Dictyostelium discoideum AX4]
          Length = 485

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLM-GQDEKLKSLASFLKVSQGNVVGRVEE------IWE 765
           E  ++   R IE    + A  HL    D K K     LK     +  R+E+      +  
Sbjct: 293 EQFVKITNRYIEF-PNKIAIDHLEFENDGKTKRKEEKLKERVNKINTRIEKEKKKQELIL 351

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
           E +KL+    +++ Q   E+    +I   N     + +
Sbjct: 352 EEKKLKKEQREKEKQELKENFEKQEIEIQNLTKFDLED 389


>gi|321312731|ref|YP_004205018.1| bacteriophage SPP1 receptor [Bacillus subtilis BSn5]
 gi|320019005|gb|ADV93991.1| bacteriophage SPP1 receptor [Bacillus subtilis BSn5]
          Length = 1074

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK----LQLIHAKRKLQL---- 781
           +A+  L    E++K +   LK  +      +++  +E ++    L       K Q+    
Sbjct: 568 KAKEQLSKASERIKQIEEELKEKENTHNEALKKKLQELKEQMDGLNDEIDDLKDQVKTLD 627

Query: 782 -NVEDLSCHKIADVNFMSHIISEVDSKE 808
            N++ L   +  +   +   I E+++K+
Sbjct: 628 DNLKRLEAKRKREFEGIYSAIRELENKD 655


>gi|294619108|ref|ZP_06698603.1| threonyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291594769|gb|EFF26151.1| threonyl-tRNA synthetase [Enterococcus faecium E1679]
          Length = 646

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 10/167 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA HL+  A+  +  +     G  I              +T+ +L +IE  +  I+ +N
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKEN 132

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LP+  R++++++A+   A+     +    +    +     G     LC G HV STG I 
Sbjct: 133 LPIERRVLSKQEALEIFASDPYKVELISELPEEVITAYQQGEF-IDLCRGPHVPSTGRIQ 191

Query: 707 LLYI-------VSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKS 744
           +  +          +S    ++R+   A   ++A    +   E+ K 
Sbjct: 192 VFKLLSVAGAYWRGNSNNQMMQRVYGTAFFDKKALKEYIRLREEAKE 238


>gi|224051629|ref|XP_002200161.1| PREDICTED: thyroid hormone receptor interactor 11 [Taeniopygia
            guttata]
          Length = 1946

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 740  EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
              +  L+         +    + +  E  +L+    ++   + +   +  +++D    + 
Sbjct: 1290 ATISQLSGVQCSPPEALSEECKLLQNELEQLKKRLQEKDSTIRILQENNQRLSDSVATAS 1349

Query: 800  IIS-------EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
             I        E + +++K   D LQK ++   I++   S +     L+ V+E+L ++ N 
Sbjct: 1350 EIERKSQEGTESEMRQIKEKHDVLQKSLREKDILIKSKSDQ-----LLSVSENLSNKENE 1404

Query: 853  VDLARLSAKVL 863
             +L + +   L
Sbjct: 1405 NELLKQAVTNL 1415


>gi|168489392|ref|ZP_02713591.1| pneumococcal surface protein A [Streptococcus pneumoniae SP195]
 gi|183572047|gb|EDT92575.1| pneumococcal surface protein A [Streptococcus pneumoniae SP195]
          Length = 746

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + L   +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 236 IEAKLNKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 289

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARL 858
            + EL++ +  L+K+I +  I+L G   E         T  L ++  A   +LA+ 
Sbjct: 290 KADELQNKVADLEKEISNLEILLGGADPEDD-------TAALQNKLAAKQAELAKK 338


>gi|229578196|ref|YP_002836594.1| hypothetical protein YG5714_0381 [Sulfolobus islandicus Y.G.57.14]
 gi|229583114|ref|YP_002841513.1| hypothetical protein YN1551_2674 [Sulfolobus islandicus Y.N.15.51]
 gi|228008910|gb|ACP44672.1| hypothetical protein YG5714_0381 [Sulfolobus islandicus Y.G.57.14]
 gi|228013830|gb|ACP49591.1| conserved hypothetical protein [Sulfolobus islandicus Y.N.15.51]
          Length = 153

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                  +EKLK +      +   +  +++E+ +E  K ++   K KL+     +   ++
Sbjct: 87  LKDFDECNEKLKEVEEKCNKNLDELEKKLDELQKELDKKEVEV-KEKLKTLDNLIKIMEV 145

Query: 792 A 792
            
Sbjct: 146 N 146


>gi|6752403|gb|AAF27712.1|AF071816_1 PspA [Streptococcus pneumoniae]
          Length = 526

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK  +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 247 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 300

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + EL++ +  L+K+I +  I+L G   E 
Sbjct: 301 KADELQNKVADLEKEISNLEILLGGADPED 330


>gi|45357807|ref|NP_987364.1| hypothetical protein MMP0244 [Methanococcus maripaludis S2]
 gi|45047367|emb|CAF29800.1| Conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 338

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG- 882
             ++    ++++  + +   + +  + +   L    AK+L G GGG     A++ G N  
Sbjct: 251 AFVVAARKRDREIRISVRSRKAISKKIHMGALMEKVAKILDGQGGG----HAEAAGLNAP 306

Query: 883 ---NKA-DQAIAGVAS 894
               K  ++A+  V S
Sbjct: 307 WNKEKTKEEAVESVLS 322


>gi|329667791|gb|AEB93739.1| hypothetical protein LJP_1417c [Lactobacillus johnsonii DPC 6026]
          Length = 812

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +  + +  Q E L    + L      +  ++    EE +K+Q    +   +     L  
Sbjct: 189 NQLINQIEEQKEVLAQTNNELN-DYRELEEKLTREKEELKKIQAELVELNKEDQKISLLM 247

Query: 789 HKIADVNFMSHIISEVDS 806
            KI +      +  EV  
Sbjct: 248 QKITNFKQYQQLKEEVQP 265


>gi|326920314|ref|XP_003206419.1| PREDICTED: hypothetical protein LOC100541605 [Meleagris gallopavo]
          Length = 4007

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 63/208 (30%), Gaps = 24/208 (11%)

Query: 643  IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            + +      ++    + +      +L     D  + V +            C G+ +   
Sbjct: 2170 LEELRDSYAKLQEETEMLKEELRKILVEFGGDGEKAVDLNSMRQQEQYQEQCKGSLLEDI 2229

Query: 703  GEIMLLYIVSESSIRAGIRRIEAITGQRAR------SHLMGQDEKLKSLASFLKVSQGNV 756
             ++        +        +E +  ++               EKL+ L           
Sbjct: 2230 KQLQKKLKTFSTETADMKMVLECVNNEKEILVKKNEEDYRMSQEKLQKLRKEANKEIAEK 2289

Query: 757  VGRVEEIWEEYRK------LQLIHAKRKLQLNVEDL-----SCHKIADVN-FMSHIISEV 804
               +E +    +       L+    K+ L+ + E++     +  +I +    + H + + 
Sbjct: 2290 NEEIEALHSSLKDFKEKLDLEKELLKKALKESQEEIHRYKATFEEIKNEKEELVHHLEDS 2349

Query: 805  DSK------ELKSVMDALQKKIQSGIIM 826
            + K      ELK V +  +K +    ++
Sbjct: 2350 NLKLINKKRELKHVSEENKKLLTELCLL 2377


>gi|116328008|ref|YP_797728.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116120752|gb|ABJ78795.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 1252

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L GQ + L+     LKVS   +  +   +  E R  +L  AK  ++   E L      
Sbjct: 533 EELEGQTQILRQQQEELKVSNEELEEQTRAL--EMRNKELELAKNDIEQKTEQLELSGKY 590

Query: 793 DVNFMSHIISEV--DSKEL----KSVMDALQKKIQSG 823
              F++++  E+      L    K + D  +K +   
Sbjct: 591 KSEFLANMSHELRTPLNSLLILSKDLADNKKKNLDED 627


>gi|74202635|dbj|BAE24872.1| unnamed protein product [Mus musculus]
          Length = 884

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 141/520 (27%), Gaps = 35/520 (6%)

Query: 301 LRRIMRRA---MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED-E 356
           +R ++ R    +     L         L   + +E+   +  + +        L  E  E
Sbjct: 369 IRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKE 428

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           R     +      + +L  +GK  +       K         D +   L        +++
Sbjct: 429 RIAALKNELRQEREQMLQQVGKQRVELEQEIQKAKTEENYIRDRLALSLKENNRLETELL 488

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
              + L E  S  +     L +   EK  F   +   A  F+  + L   +   E +  L
Sbjct: 489 ENAEKLAEYESLTQKLQRSLENVLAEK--FGDLDPSSAEFFLQEERLAQMRNEYEQQCRL 546

Query: 477 CQKPPIDLTNGVS-----SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
            Q    +L + +        V  +  +  + EE   G    +  DQ P   E      + 
Sbjct: 547 LQDQVDELQSELEEYQAQGRVLRLPLKNSLSEEL-DGHSGGIEPDQGPGSEECN--PLNM 603

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                  I        +    + +      R   +      +  + +            H
Sbjct: 604 SIEAELVIEQMKEQHHRDLCHLRLELEDKVRHYEKQLDDTRVASEQEQAAMKQKYEQGVH 663

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
            L   +S +        G            +        +L+   D     + + L    
Sbjct: 664 TLEKRVSELRSEIADLEGQAAVLREAHHKASCRHEEEKRQLQMAFDEEKAQLQEELR--- 720

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-DGGVHSSALCGGTHVSSTGEIMLLYI 710
                 +             +      ++     +  V          + S  E   L  
Sbjct: 721 ---QEHERELQARLQQAAESFRQEREGLAQAAWTEEKVRGLEQSYQEQLLSLEEKHALEK 777

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLK----------SLASF----LKVSQGNV 756
                  +   R E   G+     L  ++  L+          S+++     L  SQ  +
Sbjct: 778 EELREELSEHHRRELQEGRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEEL 837

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
             ++E I +E   +Q +  K K Q++   +   ++   N 
Sbjct: 838 WQKIETIEQEKASIQTMVEKLKKQVSDLKIKNQQLDSENI 877


>gi|322704392|gb|EFY95987.1| putative vesicular transport protein [Metarhizium anisopliae ARSEF
           23]
          Length = 1067

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-EEYRKLQLIHAKRKLQLNVEDLS 787
           +        + + L+  ++ LK ++  +  +++E+   E R+ +L     K Q  V D  
Sbjct: 633 REVLQKAQPELKSLRQESAELKTTKEELAAKIKELKTAERRESELKRDVSKAQQLVADGE 692

Query: 788 CH 789
             
Sbjct: 693 KE 694



 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 18/98 (18%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAKRKLQL 781
              L  + +  + L   ++  Q N+V           +++E+ +E  KL+   A+ + Q+
Sbjct: 518 IEKLSKRRKTEEDLREEIENLQENLVNIGQDHVEAKEKIKELEQEKTKLKEHIAELEAQV 577

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                +    A V          D   L+   D L+ K
Sbjct: 578 GSSKSNATSNAKVQG--------DLDALRKEYDDLRDK 607


>gi|303234640|ref|ZP_07321272.1| copper amine oxidase N-terminal domain protein [Finegoldia magna
           BVS033A4]
 gi|302494242|gb|EFL54016.1| copper amine oxidase N-terminal domain protein [Finegoldia magna
           BVS033A4]
          Length = 527

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/84 (10%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--------LNVEDLS 787
               +  K +      +   ++  + ++ +E ++LQ  +AK K             ++ +
Sbjct: 103 NKIAQLEKEIEDLKNSNNDELIAEITQLKDELKRLQDKNAKLKEDYSSTKWELEAEKEKT 162

Query: 788 CHKIADVNFMSHIISEVDSKELKS 811
                 +  M   +  ++ +  K 
Sbjct: 163 DKNENKIKEMQEKLESLEGELAKK 186



 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            + L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +KI
Sbjct: 49  INDLENQIKDLNEKKQEDQSKIDELKEKLESCKDNGEKLKQEKAKLEEEIRDKD---NKI 105

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +      +   ++ EL + +  L+ +++
Sbjct: 106 AQLEKEIEDLKNSNNDELIAEITQLKDELK 135


>gi|297466138|ref|XP_594411.5| PREDICTED: early endosome antigen 1, 162kD [Bos taurus]
          Length = 1461

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---QLIHAKRKLQLNVEDLSC 788
            R+ +  Q++ ++ L +     + ++  + +++ E+ + L   Q   + ++ +L  E    
Sbjct: 1117 RNQIGNQNKLIQELKTTKTTLEQDLAKKEQQLKEQNKALQDMQKEKSLKEKELVNEKSKL 1176

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             +  ++            KE+  + + L+   Q  I
Sbjct: 1177 AETEEIKCRQE-------KEIAKLSEELKSHKQESI 1205


>gi|289424014|ref|ZP_06425803.1| penicillin-binding protein, transpeptidase [Peptostreptococcus
           anaerobius 653-L]
 gi|289155589|gb|EFD04265.1| penicillin-binding protein, transpeptidase [Peptostreptococcus
           anaerobius 653-L]
          Length = 1012

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 41/121 (33%), Gaps = 16/121 (13%)

Query: 733 SHLMGQDEKLK--SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
             ++ + E+LK        K     +  ++          +    + K  + V+  +  K
Sbjct: 826 DKVIAKYEELKTEKEQELTKNKIEELKKKIASPQTSKDDKEKYEKELKNGVRVKLDNTDK 885

Query: 791 IAD------VNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVT 843
           I        +  ++H ++  D       +D+ ++   S    +    +   K +V  ++ 
Sbjct: 886 INSFYLRKAIKLLNHKLTNED-------IDSFKENYGSFAWCVAFAPADNPKIAVACMIP 938

Query: 844 E 844
           +
Sbjct: 939 Q 939


>gi|255994332|ref|ZP_05427467.1| chaperone protein DnaK [Eubacterium saphenum ATCC 49989]
 gi|255993045|gb|EEU03134.1| chaperone protein DnaK [Eubacterium saphenum ATCC 49989]
          Length = 612

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 12/127 (9%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           I    A+    G+++ +  ++S  K+S   V  +++E  +   + +      +++   E 
Sbjct: 455 IVNVSAKDKGTGKEQSIT-ISSSNKLSDEEVEAKIKEAEQHAEEDKKRKEGIEVKNRAES 513

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
           L       +      I     KE++   D L K I+SG       + + KA      T+ 
Sbjct: 514 LVYETEKSLKEAGDKIDASKKKEIEDAKDELSKAIESG------NNDDIKAK-----TDA 562

Query: 846 LLDRFNA 852
           L ++ +A
Sbjct: 563 LTEKLHA 569


>gi|253743525|gb|EES99892.1| Kinesin-5 [Giardia intestinalis ATCC 50581]
          Length = 1067

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
             LKV+    V +V E+ EE  +L  +++  + K ++N   L   K    +FM   +  +
Sbjct: 491 EKLKVALNKTVEKVNELHEEKCRLYEKIVLGRDKEKINAAQLDNLKANGASFMLENVFGL 550

Query: 805 DSKELKSVMDALQKKIQSGII 825
           +   L+ ++D  +  I S I+
Sbjct: 551 E--SLRCLID--KSGISSAIV 567


>gi|227826775|ref|YP_002828554.1| hypothetical protein M1425_0377 [Sulfolobus islandicus M.14.25]
 gi|229583946|ref|YP_002842447.1| hypothetical protein M1627_0385 [Sulfolobus islandicus M.16.27]
 gi|227458570|gb|ACP37256.1| conserved hypothetical protein [Sulfolobus islandicus M.14.25]
 gi|228018995|gb|ACP54402.1| conserved hypothetical protein [Sulfolobus islandicus M.16.27]
          Length = 153

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                  +EKLK +      +   +  +++E+ +E  K ++   K KL+     +   ++
Sbjct: 87  LKDFDECNEKLKEVEEKCNKNLDELEKKLDELQKELDKKEVEV-KEKLKTLDNLIKIMEV 145

Query: 792 A 792
            
Sbjct: 146 N 146


>gi|212224582|ref|YP_002307818.1| alanyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212009539|gb|ACJ16921.1| alanyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 151

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 2/135 (1%)

Query: 585 INHSATHLLHHALSTILGSHV-SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             H+A H++  A+  +LG          +  +  R  V   + +T  E+  IE   N  +
Sbjct: 7   RAHTALHVVKGAVVKVLGEGAKWTASVYVGGNHGRLTVKFDRKLTPEEVAEIERLANKKV 66

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N+P+    + R +A       +    +     V +++       +   C   H ++TG
Sbjct: 67  KENVPIHIYELPRNEAEKRFGEDMY-DLFPILPEVKTLKVAVIEDWNVNACKEEHTATTG 125

Query: 704 EIMLLYIVSESSIRA 718
           EI  + I      ++
Sbjct: 126 EIGRIKIRKVRFRKS 140


>gi|193216780|ref|YP_002000022.1| massive surface protein MspE [Mycoplasma arthritidis 158L3-1]
 gi|193002103|gb|ACF07318.1| massive surface protein MspE [Mycoplasma arthritidis 158L3-1]
          Length = 2992

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 56/179 (31%), Gaps = 7/179 (3%)

Query: 644  AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
               L      +N+       A     TK          E  D              ++T 
Sbjct: 1255 FNKLKATISEVNKTLKAKKDALKEQQTKNAQIKDEALKEAYDATKAIDEANKLEDSNNTK 1314

Query: 704  EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
               L   + +++      ++E      A+  +  +   ++     LK    +   +++ +
Sbjct: 1315 IAKLTKALEDANNAK--TKLEGTISSLAKDTVNKK--LVEDALENLKTKIKDAQDKLDAL 1370

Query: 764  WE-EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             E E + L+ I           D +   + +   +     E  ++ LKS +D  + +IQ
Sbjct: 1371 KEGETKLLERIKKALDAIKEALDDADDNLENATDLKDR--EATNEALKSAIDKAKAEIQ 1427


>gi|156364891|ref|XP_001626577.1| predicted protein [Nematostella vectensis]
 gi|156213459|gb|EDO34477.1| predicted protein [Nematostella vectensis]
          Length = 882

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAIT--GQRARSHLMGQ----DEKLKSLASFLKVSQG 754
            + E+ LL    E       RR+  +   G +  + L  +     +K+ S  S +  +  
Sbjct: 455 RSNEVNLLRKKHEDEK----RRLIGLKDGGDKELNRLKEELTQVSKKVSSAVSEMSDTPD 510

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           NV  +VE++  E + L+  H + +      +    +  
Sbjct: 511 NVSNQVEKVVNELKSLKKKHEELENSSKGAERRSKEAE 548


>gi|116051726|ref|YP_789435.1| hypothetical protein PA14_16180 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586947|gb|ABJ12962.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 688

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 72/215 (33%), Gaps = 36/215 (16%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA--RSHLMGQDEKLKSLASFLKVSQGNV 756
           V+   E+ L  I  E ++    + I  +  +R      +  ++E++K +     VS+   
Sbjct: 328 VAREREVELQKIEKEKALEEQRKNIANVIRERVAVEKTVAQEEERIKEVRE---VSEAER 384

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           V +V  +  +    Q +  + K     E  S HK  ++N M+    E  SK+        
Sbjct: 385 VKQVILLQAQAEAEQELVRQVKQAEADEARSKHKAVEINTMAQAELEAASKQA-----EA 439

Query: 817 QKKIQSGIIM--LVGISKEKKASVLIVVTED----LLDRFNAVDLARLS----------A 860
           +K++  G+          + +   +    ++       R  A  L   +          A
Sbjct: 440 KKRLAEGVEAERAAPGLADARVLEVTAAAKEKDGLAAARVRAEQLIAEARGDEERGLADA 499

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           +VL           AQ+     +   +A       
Sbjct: 500 RVLE----------AQAAAKEKDGLAEAKVLAEKL 524


>gi|56756535|gb|AAW26440.1| SJCHGC09401 protein [Schistosoma japonicum]
          Length = 429

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 41/94 (43%), Gaps = 14/94 (14%)

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDL 855
           +S    ++D+  LKS +D ++ ++ S  + +     ++ A +      D LL   +A ++
Sbjct: 118 VSVRCKDMDAGSLKSAIDEVRSRVGSIPVHVACCRLDE-ACLAAGAGADILLTGLSAKEI 176

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             ++++V        +  ++     N +    A+
Sbjct: 177 VDIASQV--------KEFLS----RNPSLLPAAL 198


>gi|86607055|ref|YP_475818.1| threonyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|86555597|gb|ABD00555.1| threonyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 603

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 65/195 (33%), Gaps = 21/195 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H+L  A+  +        G   T  G  +D  H +P T  +L+ I+  +  II + 
Sbjct: 31  HTTSHVLAMAVQRLFPKAQVTIGPT-TDYGFYYDFDHPEPFTPEDLERIKKEMQAIIKKG 89

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRV-----RVVSVEYEDGGVHSSALCGGTHVSS 701
           LPV+   ++RE+A        LG  Y   +         +     G     LC G HV +
Sbjct: 90  LPVIREEVSREEARRR--IEALGEPYKLEILDSIPEGEPITIYHLGDEWWDLCAGPHVEN 147

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI         S+     R     G   +  L                +   +     
Sbjct: 148 TKEINP-KAFDLLSVAGAYWR-----GDETKPQLQRIYGTAWE-------TPEELKEYKR 194

Query: 762 EIWEEYRKLQLIHAK 776
            + E  R+      K
Sbjct: 195 RLEEAKRRDHRKLGK 209


>gi|331270727|ref|YP_004397321.1| putative phage tail tape measure protein [Clostridium botulinum
            BKT015925]
 gi|329127690|gb|AEB77631.1| putative phage tail tape measure protein [Clostridium botulinum
            BKT015925]
          Length = 1764

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 73/626 (11%), Positives = 179/626 (28%), Gaps = 63/626 (10%)

Query: 208  FEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN 267
               Q K       K   D    +ER       K      D  K +    E +     +  
Sbjct: 910  HNDQMKASTNEYTKKINDI---IERAT----NKHRQLSEDELKDISMYRENMKENAIKTL 962

Query: 268  NIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
            +      +VI++  +S S  I               R      +           L    
Sbjct: 963  SASEIESKVILERTKSYSTSITTEQASEVIKNAETQR------VKTVDEANKEFILKKQA 1016

Query: 326  LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
            +       GS   E  +      + +++ +++  +T+ +     +GV+  + +       
Sbjct: 1017 IEEARDVTGSMTKEQAE------KAIKNAEKQRDETVKKAGEQKEGVVKQVSQQNADVIK 1070

Query: 386  VAFK----LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
                    +   + +  + +               SFN   E+ +         +     
Sbjct: 1071 NIDTSNGQIKTKYQVLKEDISKKAHEA--WSSIAESFNSGGEKIKQSTHEAIEKIRGKCK 1128

Query: 442  EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
            E    +           G D+    K   + +K   +    +L + + +    + +  + 
Sbjct: 1129 EAKTNAKIW--------GSDIAESLKNGLDSKKESIKAKAEELKSKIKAGFNGLKEDMKS 1180

Query: 502  VEE-AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            + E AV G +  + F +     +A      T  A+ +   +     +    G FV   + 
Sbjct: 1181 IAEWAVEGLEKGLEFSRK-LKEKAESLAQKTIAAVKEKFDIHSPSRKMMELGKFVSEGLA 1239

Query: 561  ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               +    +++  + D  N    S N          L  +L    ++             
Sbjct: 1240 LGIVNNKHLAVKASEDLANAVISSTNKIKESTFQDQLGHLLNWGSTEKEPYQDATNFINK 1299

Query: 621  VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +   +   S  +   E        +N     +  N +              Y  +++  +
Sbjct: 1300 LNDEQLEHSKSVLDKEYKFRVENVKNDLKNVKESNAKKLELEKNRVNSQIAYYQKMQKNT 1359

Query: 681  VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG----IRRIEAITGQRARSHLM 736
                    +++ +           +       ES+I+A     I+++E ++      +  
Sbjct: 1360 KNKNTKNFYANKIDT---------LKQYLKQYESTIKATQDVTIKKLE-VSKNALEKYYA 1409

Query: 737  GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
               E LK+    LK           ++ +  ++      K++ +   E+++ +       
Sbjct: 1410 EAKELLKNREDSLKEFMSTTSNFASKLKDALKQSIDEIQKKEEEAIKENINLN------- 1462

Query: 797  MSHIISEVDSKELKSVMDALQKKIQS 822
                  +   K LK+  D  + K+++
Sbjct: 1463 -----DKWKEKTLKAYADVHKTKLEN 1483


>gi|308511423|ref|XP_003117894.1| CRE-LAM-2 protein [Caenorhabditis remanei]
 gi|308238540|gb|EFO82492.1| CRE-LAM-2 protein [Caenorhabditis remanei]
          Length = 1550

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              + A   + G ++  K +A  LK  Q  +   +       R L L   ++K      +L
Sbjct: 1230 ANKEASDAIYGGEQISKQIAE-LKEKQNQINESIS------RTLDLAEEQKKSAEEANNL 1282

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +   ++  N  +  I  VD KE+K+ +  + ++ ++ +
Sbjct: 1283 AA--VSLTNVEAVKIPSVDPKEMKNDVAGVLEEAENLV 1318


>gi|296937682|gb|ADH94798.1| putative CENP-E-like kinetochore protein [Hordeum bogdanii]
          Length = 351

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 69/204 (33%), Gaps = 20/204 (9%)

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           I   +N+ + +    +   M + +A+             +++R    E            
Sbjct: 138 ITHALNERVIELEDELKEAMEKLEALEEKNMLCQCENLEEKLRASQSEINTLQKDLEE-- 195

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH-------------LMGQDEK 741
               + +  EI       E+++     + E + G+ A +              +     +
Sbjct: 196 KARSLDNIKEISSEKEDLEAAVLENNNKFEELKGEMALAAKHHEAQLSYRDLEIEKCKRE 255

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           L+ ++      +  +   + E+ E  + L+    K   +    +    ++      SH +
Sbjct: 256 LEQVSERYSYDKSTLETEIRELQEVVKNLEGNLVKLSEEKLQLEAQVMELEQT---SHSL 312

Query: 802 SEVDS--KELKSVMDALQKKIQSG 823
            +  +  K+L+ V+  LQ ++++ 
Sbjct: 313 DDSSAEIKKLQKVIKDLQARLEND 336


>gi|241953885|ref|XP_002419664.1| microtubule-associated protein, putative; nuclear fusion protein,
           putative [Candida dubliniensis CD36]
 gi|223643004|emb|CAX43261.1| microtubule-associated protein, putative [Candida dubliniensis
           CD36]
          Length = 340

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 39/107 (36%), Gaps = 13/107 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVV-----------GRVEEIWEEYRKLQLIHAKR 777
           QRA      + E   +     + +   +V            R+EE+  E +  Q      
Sbjct: 131 QRALREKEKRLENFNNQREEWRAAMDELVAVQQEGIQVYEDRIEELENENKVQQEKLDNA 190

Query: 778 KLQLNVEDLSCHKIADV--NFMSHIISEVDSKELKSVMDALQKKIQS 822
              +   +    ++     N +S  +++V   + +  ++ L+ +++S
Sbjct: 191 NASVTAANSKIKELEQTIENLLSEKVNDVQISDTRKEIEKLKHELES 237


>gi|224072385|ref|XP_002303710.1| predicted protein [Populus trichocarpa]
 gi|222841142|gb|EEE78689.1| predicted protein [Populus trichocarpa]
          Length = 184

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  ++++L+     LK  +  +V  ++   +E ++L+    + K QLN +    + +
Sbjct: 7   LDELTIENDRLRRENDSLKKEEVQLVQTLQRQKDEMKQLEKEFGQLKGQLNSQ----NTV 62

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQ 817
            +V     + +  + K+L+     L+
Sbjct: 63  VEVLLKRLVSTGSNYKDLQRENTQLK 88


>gi|326433176|gb|EGD78746.1| hypothetical protein PTSG_01725 [Salpingoeca sp. ATCC 50818]
          Length = 297

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLNVEDLSCH 789
             L  + + +K  A         +  R+    EE   L+L   K K    Q +  DL   
Sbjct: 180 KDLQAEVDAMKRKAKQESAGNQGLEVRLNRALEERDNLKLQLQKLKERPAQASDADLKAL 239

Query: 790 KIADVNFMSHIISEVDS--KELKSVMDALQKK 819
           +             +++  K L+ ++D L+++
Sbjct: 240 EDEIKQLRKQRNEVLEAFEKALR-LVDVLKRQ 270


>gi|325478813|gb|EGC81923.1| putative chaperone protein ClpB [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 834

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVN 795
              + +   AS LK    N    ++E+ E+  +L+     +    N   L    K+ + N
Sbjct: 388 KAIDLMDEAASMLKNKLENTPDSLDELREDILELEESLQLKDNDKNKSKLDELKKLYENN 447

Query: 796 FMSHIISEVDSKELKSVMDALQK 818
                    D ++L+ +   +++
Sbjct: 448 LEIKQEETEDLRDLRRIRSDIRE 470


>gi|163736529|ref|ZP_02143948.1| hypothetical protein RGBS107_15396 [Phaeobacter gallaeciensis
           BS107]
 gi|161390399|gb|EDQ14749.1| hypothetical protein RGBS107_15396 [Phaeobacter gallaeciensis
           BS107]
          Length = 1083

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G      +   + ++ +    L+ +   +    EE+     +LQ  + + +      + S
Sbjct: 637 GDATFERIRNLENEVATTREALQQTIEELETSNEELQSLNEELQSTNEELQATNEELETS 696

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             ++   N     ++E    EL+     L  +    I +L          + IVV +  L
Sbjct: 697 NEELQSTNEELITVNE----ELQVTASELSGRTGELISVLESTP------LAIVVADSAL 746

Query: 848 DRFNA 852
               A
Sbjct: 747 QITQA 751


>gi|163743229|ref|ZP_02150610.1| MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor
           [Phaeobacter gallaeciensis 2.10]
 gi|161383417|gb|EDQ07805.1| MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor
           [Phaeobacter gallaeciensis 2.10]
          Length = 1084

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G      +   + ++ +    L+ +   +    EE+     +LQ  + + +      + S
Sbjct: 637 GDATFERIRNLENEVATTREALQQTIEELETSNEELQSLNEELQSTNEELQATNEELETS 696

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             ++   N     ++E    EL+     L  +    I +L          + IVV +  L
Sbjct: 697 NEELQSTNEELITVNE----ELQVTASELSGRTGELISVLESTP------LAIVVADSAL 746

Query: 848 DRFNA 852
               A
Sbjct: 747 QITQA 751


>gi|301782437|ref|XP_002926634.1| PREDICTED: kinectin-like [Ailuropoda melanoleuca]
          Length = 1330

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            L  ++ ++K + + LK  + ++  +   ++E+ +E +  +    + K Q   +  S    
Sbjct: 935  LKEKENEMKRIEAILKERESDLSSKTKLLQEVQDENKLFKSEIEQLKQQNYQQAPSFPPH 994

Query: 792  AD-VNFMSHIISEV-----DSKELKSVMDALQKKIQS 822
             + +  +S    E+     +   LK  ++  +KK   
Sbjct: 995  EELLKVISEREKEITGLQNELDSLKEAVEHQRKKNND 1031


>gi|261416573|ref|YP_003250256.1| hypothetical protein Fisuc_2188 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373029|gb|ACX75774.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326755|gb|ADL25956.1| conserved domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 815

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 35/92 (38%), Gaps = 19/92 (20%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++A   +  + +      + L  S+ +   +++++ EE + LQ      K          
Sbjct: 257 KKAFDEIREEIQLEYD--NRLAQSKASFENQIKDLNEENKNLQKQLKSYKD--------- 305

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
                   +   +  + ++E K +++ L+ K 
Sbjct: 306 --------IKSQLDGMSAEEAKELINNLRNKN 329


>gi|187776953|ref|ZP_02993426.1| hypothetical protein CLOSPO_00497 [Clostridium sporogenes ATCC
           15579]
 gi|187775612|gb|EDU39414.1| hypothetical protein CLOSPO_00497 [Clostridium sporogenes ATCC
           15579]
          Length = 592

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 731 ARSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           A  +L  +    +K++   LK  +  +    + + ++ + L+    + KL+ +       
Sbjct: 461 AIKNLESKYLIEIKNIKKQLKDKENEL----KALLDKNKNLEKNIKELKLENDTAKEKLE 516

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           K  + N +S++ ++ D +     +  ++ +++ 
Sbjct: 517 KSKN-NILSNLKNKYDIE-----VSTIKNQLEE 543


>gi|189043093|ref|YP_001936034.1| hypothetical protein BPs1_6 [Mycobacterium phage BPs]
 gi|239590017|ref|YP_002941864.1| gp6 [Mycobacterium phage Angel]
 gi|171909208|gb|ACB58165.1| hypothetical protein BPs1_6 [Mycobacterium phage BPs]
 gi|238890549|gb|ACR77538.1| gp6 [Mycobacterium phage Angel]
 gi|255927850|gb|ACU41470.1| gp6 [Mycobacterium phage Hope]
          Length = 180

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 21/123 (17%)

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +V R+E +  E + L+            +     +IAD   +   +  +     K V   
Sbjct: 50  LVKRLEALKAENKVLKPKAKLVDDAEEAKKSDAQRIAD---LQTKVDALP----KQVAAG 102

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG--RPH 873
           L++ +    + L GI K+     L   T +L        L +  A++L   G GG  R +
Sbjct: 103 LREHL----VELHGIDKDDAELFLTGDTPEL--------LLKQVARLLESSGAGGSKRKN 150

Query: 874 MAQ 876
             Q
Sbjct: 151 YVQ 153


>gi|168066383|ref|XP_001785118.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663297|gb|EDQ50069.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 628

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 10/70 (14%)

Query: 733 SHLMGQDEKLKSLASFLKV----------SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
             L    ++L  L++ LK               V  +V+ + +  ++L+        +  
Sbjct: 500 DDLKNHADRLTDLSTKLKNLRLERDEAVQKAEGVDEKVKALQDRIKELEQEVEALNKKNA 559

Query: 783 VEDLSCHKIA 792
             +     + 
Sbjct: 560 ELESQLQSVG 569


>gi|118383832|ref|XP_001025070.1| Protein kinase domain containing protein [Tetrahymena thermophila]
 gi|89306837|gb|EAS04825.1| Protein kinase domain containing protein [Tetrahymena thermophila
           SB210]
          Length = 1137

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 24/60 (40%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L  ++ KL+   S +K+ +  +  R E++ E   +++        Q         ++  +
Sbjct: 267 LRLKERKLREKHSQIKLKEDELKKREEQLQERIDQIEKKEKDLTAQEQTLKDLEEQVKQI 326


>gi|326664147|ref|XP_696198.4| PREDICTED: f-box only protein 41 [Danio rerio]
          Length = 805

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
              G+ R++A    RA   L   DE+L+ L+  +   +  +  RV  +  E  +      
Sbjct: 136 YEEGLARLKA----RAFERL-ELDERLEKLSEEV---EQKISARVSRLQAELERKSSELE 187

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           K KL+          + D         +V  + L S+   L  K Q 
Sbjct: 188 KAKLESERLSQEKQDLEDKATELSRQVDVSVEMLASLKQDLVNKEQE 234


>gi|256384307|gb|ACU78877.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385140|gb|ACU79709.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455987|gb|ADH22222.1| conserved hypothetical protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 753

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 35/142 (24%)

Query: 733 SHLMGQDEKLKS-LASFLKVSQG---------NVVGRVEEIWEEYRKLQLIHAKRKLQ-L 781
            +L  + ++LK   + FLK++           +   + +E+ E+ +KL     + + +  
Sbjct: 483 KNLQDKSKELKEKTSEFLKLNNEKTNLEKQVKDFTEKQKELLEKQKKLSSEIKQIESKTS 542

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            +++        +  +  +I  ++ K  ELK   D L K            S +KK    
Sbjct: 543 EIKNKLLKDDQGLKNIKEVIDGLNQKISELKHTNDNLTK------------SNDKKY--- 587

Query: 840 IVVTEDLLDRFNA--VDLARLS 859
                D+ D+  A  VDL +  
Sbjct: 588 -----DIADQKAAEIVDLIKEI 604


>gi|220678005|emb|CAX14165.1| novel protein similar to H.sapiens FBXO41, F-box protein 41
           (FBXO41) [Danio rerio]
          Length = 387

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
              G+ R++A    RA   L   DE+L+ L+  +   +  +  RV  +  E  +      
Sbjct: 136 YEEGLARLKA----RAFERL-ELDERLEKLSEEV---EQKISARVSRLQAELERKSSELE 187

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           K KL+          + D         +V  + L S+   L  K Q 
Sbjct: 188 KAKLESERLSQEKQDLEDKATELSRQVDVSVEMLASLKQDLVNKEQE 234


>gi|195942383|ref|ZP_03087765.1| hypothetical protein Bbur8_05979 [Borrelia burgdorferi 80a]
          Length = 2077

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG----GGGGGR- 871
           +    +  I+L G++K+ K +        ++    A    +   K +      G GGG  
Sbjct: 144 KNDQIAAAIVLRGLAKDGKFANANAANTKVVAAKKASGWIKEMHKAVEDTAKAGTGGGES 203

Query: 872 -PHMAQSGGPNGNKADQA 888
             ++A  GG N     +A
Sbjct: 204 IANVATGGGDNAGAGKKA 221


>gi|152985626|ref|YP_001346774.1| hypothetical protein PSPA7_1390 [Pseudomonas aeruginosa PA7]
 gi|150960784|gb|ABR82809.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 688

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 36/215 (16%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA--RSHLMGQDEKLKSLASFLKVSQGNV 756
           V+   E+ L  I  E ++    + I  +  +R      +  ++E++K +     VS+   
Sbjct: 328 VAREREVELQKIEKEKALEEQRKNIANVIRERVAVEKTVAQEEERIKEVRE---VSEAER 384

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           V +V  +  +    Q +  + K     E  S HK  ++N M+    E  SK+        
Sbjct: 385 VKQVILLQAQAEAEQELVRQVKQAEADEARSKHKAVEINTMAQAELEAASKQA-----EA 439

Query: 817 QKKIQSGIIM--LVGISKEKKASVLIVVTED----LLDRFNAVDLARLS----------A 860
           +K++  GI          + +   +    ++       R  A  L   +          A
Sbjct: 440 KKRLAEGIEAERAAPGLADARVLEVTAAAKEKDGLAAARVRAEQLVAEARGDEERGLADA 499

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           +VL           AQ+     +   +A       
Sbjct: 500 RVLE----------AQAAAKEKDGLAEAKVLAEKL 524


>gi|28375557|emb|CAD66602.1| SMC protein [Pyrococcus furiosus]
          Length = 1177

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           E++      E  I   + +I A+      S      E L      LK  + N+ G +  +
Sbjct: 818 ELLPRKASLEEEIEGLVNKINALKNN--ISENEKALELLNKELEKLKSIEENIKGEIRTL 875

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDS 806
            E+ +KL+   +K + +  V      ++  + N +    +++++
Sbjct: 876 REKRKKLEEDISKLREKKEVLQRKLQELEIEANTLKVRDAQLNA 919


>gi|281205446|gb|EFA79637.1| myosin [Polysphondylium pallidum PN500]
          Length = 1262

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA +     +     + K++ L   LK  Q       E++  + ++L+L   ++  +L
Sbjct: 835 RIEARSLSNVVAEKNKLETKVEELQYRLKAEQKIKEKEQEKLKSDVKQLRLQLDEKNAKL 894

Query: 782 NVEDLSCHKIADVNFMSHIISE 803
           +    S  ++  ++     + E
Sbjct: 895 SE---SAQQVQSMSLRIKQLEE 913



 Score = 37.8 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNV 783
           G+ AR        + +SL++ +   +  +  +VEE+      E +  +    K K  +  
Sbjct: 824 GKLARREYRQLRIEARSLSNVV-AEKNKLETKVEELQYRLKAEQKIKEKEQEKLKSDVKQ 882

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             L   +      +S    +V S  L+  +  L+++++  
Sbjct: 883 LRLQLDEKNAK--LSESAQQVQSMSLR--IKQLEEELEES 918


>gi|42543894|pdb|1V7O|A Chain A, Alanyl-Trna Synthetase Editing Domain Homologue Protein
           From Pyrococcus Horikoshii
 gi|42543895|pdb|1V7O|B Chain B, Alanyl-Trna Synthetase Editing Domain Homologue Protein
           From Pyrococcus Horikoshii
 gi|73535455|pdb|1WNU|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
           Complex With L-Serine
 gi|73535456|pdb|1WNU|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
           Complex With L-Serine
          Length = 165

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 5/144 (3%)

Query: 585 INHSATHLLHHALSTILGSHV-SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             HSA H++  A+  +LGS       + +  +     V   +  +  E++ IE   N+ +
Sbjct: 7   RTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKV 66

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N P+    + RE+A                 VR++ V   +    +   C   H  +T
Sbjct: 67  KENAPIKIYELPREEAEKXFGEDXYDLFPVPEDVRILKVVVIE--DWNVNACNKEHTKTT 124

Query: 703 GEIMLLYIVSES-SIRAGIRRIEA 725
           GEI  + I         G+  I  
Sbjct: 125 GEIGPIKIRKVRFRKSKGLLEIHF 148


>gi|321259367|ref|XP_003194404.1| protein-nucleus import-related protein [Cryptococcus gattii WM276]
 gi|317460875|gb|ADV22617.1| protein-nucleus import-related protein, putative [Cryptococcus
           gattii WM276]
          Length = 815

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 730 RARSHLMGQDEKLK-SLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDL 786
            A   +       K   ++ LK     V+   + + +  R+L+     A++ L +   DL
Sbjct: 531 AALEAIREGRAGDKSQTSAALKQRLDEVLEERDALLKGRRELEVAKEEAEKALAVAKIDL 590

Query: 787 SCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQ 821
           S       + ++ +   +  D+  L   +  L+++I+
Sbjct: 591 SLVGKDQSDIIAFLREGIEKDASNLGKEVTELKEQIE 627


>gi|242074314|ref|XP_002447093.1| hypothetical protein SORBIDRAFT_06g028450 [Sorghum bicolor]
 gi|241938276|gb|EES11421.1| hypothetical protein SORBIDRAFT_06g028450 [Sorghum bicolor]
          Length = 1853

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +R    L  +  +   L S  +     +  ++ E+ E+  + +        +L + +   
Sbjct: 1244 ERKLEDLTEEHSRGLELRSVAESRNEEIESQLHEVLEKVAQKEAEVTDLTEKLALLEAEN 1303

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             K+  VN    +  EVD+K   ++ D LQ++  S 
Sbjct: 1304 EKLTGVNG--ALKEEVDAKL--AMFDELQERFSST 1334


>gi|311114124|ref|YP_003985345.1| hypothetical protein HMPREF0421_20238 [Gardnerella vaginalis ATCC
           14019]
 gi|310945618|gb|ADP38322.1| hypothetical protein HMPREF0421_20238 [Gardnerella vaginalis ATCC
           14019]
          Length = 885

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 1/92 (1%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI- 791
                     +   S L+        + E    E  KL+    +++      D     I 
Sbjct: 254 EETAEDLANEEEAKSKLEAELAEAKQKSESTKVEAEKLEKEAQQKEAAAEGVDNKIENIT 313

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             +      +  +D+   ++ ++ L++K+ S 
Sbjct: 314 KQIKTAEENLKTLDADNDQNKINQLKEKVAST 345


>gi|123469906|ref|XP_001318162.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121900914|gb|EAY05939.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 5296

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 733  SHLMGQDEKLKSLASFLKV-----------SQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
              +   ++  K ++   K            S   ++   EE+ +E ++L+  +A+ K +L
Sbjct: 1824 ELIQENEDLKKKVSDLEKALGYPEDGKEHKSPSELLKENEELKKENQRLKKENAELKKRL 1883

Query: 782  NVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             +      +  + +             +ELK  ++ L+K+++ 
Sbjct: 1884 GIPVDQIIEGIMNESTASDESEDNKSPEELKREIENLKKQLED 1926



 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 45/102 (44%), Gaps = 11/102 (10%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL--------NV 783
             ++L  +++ ++   +  +    N+  +++++ EE  KL+  +++ + ++         +
Sbjct: 3169 INNLTNENKNMEQEKAKNQEKIQNIEPKLKQLEEEKSKLEDENSQNENEIQRLKDTIKEL 3228

Query: 784  EDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQS 822
             D       D   +    S    K   +L+ +++ L+  +++
Sbjct: 3229 SDKLAKSEEDNKLLKQSSSGTTDKQVEDLQEMLNKLRDDLKN 3270


>gi|90080796|dbj|BAE89879.1| unnamed protein product [Macaca fascicularis]
          Length = 479

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 23/119 (19%)

Query: 727 TGQRARSHLMGQDEKL--------KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
             Q    H   +++ +        K L +  K    N+ G+V  + E   +         
Sbjct: 175 ASQMVLEHFQQEEKAMYSAELEKQKQLIAEWKKKAENLEGKVISLQERLDEANAALDSAS 234

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELK-SVMDALQKKIQSGIIMLVGISKEKKA 836
                 D+   +I ++             EL+  ++D +QKK+ +     +  S E K 
Sbjct: 235 RLTEQLDVKEEQIEELK---------KQNELRQEMLDDVQKKLMN-----LANSSEGKV 279


>gi|328778610|ref|XP_393625.4| PREDICTED: RILP-like protein homolog [Apis mellifera]
          Length = 379

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLSCH 789
                 +++L+ +    +    ++V  V  + EE R+L     + +      + +  +  
Sbjct: 85  EDRQRFEKELEQIEEHWRQESRDLVEMVTRLQEENRRLSEALQESRSDSQYSSKQTFTAS 144

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +  D+  + H         L+S++D  + +I
Sbjct: 145 QEVDIAVLQH---------LRSMIDKQRDQI 166


>gi|315452603|ref|YP_004072873.1| viral A-type inclusion protein repeat [Helicobacter felis ATCC
           49179]
 gi|315131655|emb|CBY82283.1| viral A-type inclusion protein repeat [Helicobacter felis ATCC
           49179]
          Length = 399

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 730 RARSHLMGQDEKLKSLASFLKVS------QGNVVG--RVEEIWEEYRKLQLIHAKRKLQL 781
           +A   L      L    + LK        Q ++    ++E + +E       + K+++  
Sbjct: 12  KALKKLSKGINTLHEELTALKAQIAGLKAQQDLPSQTKIERLQDELSAEDKENLKQEVAD 71

Query: 782 NVEDLSCHK---IADVNFMSHIISEVDSKE-LKSVMDALQK 818
             + L   +     ++N +   +   + +E L++  D  + 
Sbjct: 72  LKKQLGTEQQQHFVELNNLRAELDGENGQEGLRAQRDKFKD 112


>gi|282883045|ref|ZP_06291646.1| putative chimeric erythrocyte-binding protein [Peptoniphilus
           lacrimalis 315-B]
 gi|281297102|gb|EFA89597.1| putative chimeric erythrocyte-binding protein [Peptoniphilus
           lacrimalis 315-B]
          Length = 783

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHK 790
               +  K +      +   ++  + ++ +E ++LQ  +AK K        +L   K
Sbjct: 359 NKIAQLNKEIEDLKNSNNDELIAEITQLKDELKRLQDENAKLKEDYSSTKWELEAEK 415


>gi|238631883|gb|ACR50686.1| pneumococcal surface protein A [Streptococcus pneumoniae]
          Length = 249

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK  +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 3   IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 56

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + EL++ +  L+K+I +  I+L G   E 
Sbjct: 57  KADELQNKVADLEKEISNLEILLGGADPED 86


>gi|148642414|ref|YP_001272927.1| proteasome-activating nucleotidase [Methanobrevibacter smithii ATCC
           35061]
 gi|222446088|ref|ZP_03608603.1| hypothetical protein METSMIALI_01737 [Methanobrevibacter smithii
           DSM 2375]
 gi|288869526|ref|ZP_05974789.2| proteasome-activating nucleotidase [Methanobrevibacter smithii DSM
           2374]
 gi|148551431|gb|ABQ86559.1| ATP-dependent 26S proteasome regulatory subunit, RPT1
           [Methanobrevibacter smithii ATCC 35061]
 gi|222435653|gb|EEE42818.1| hypothetical protein METSMIALI_01737 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861736|gb|EFC94034.1| proteasome-activating nucleotidase [Methanobrevibacter smithii DSM
           2374]
          Length = 420

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK----IADVNFM 797
           + ++      S+  +V +VE + EE   L+  ++K K  L  +     K    I +    
Sbjct: 4   MDNINDLENSSKEQLVEKVESMQEEIDSLKEENSKAKSNLMWKVRKLEKDKVLIENEKIR 63

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
                  ++K L+S ++  +    S  ++L  I++
Sbjct: 64  LER----ETKSLRSEVERFR----SPPLVLATITE 90


>gi|147778988|emb|CAN62540.1| hypothetical protein VITISV_031161 [Vitis vinifera]
          Length = 141

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             + EKL+   + LK  +      ++ + E+   L     K KL+   +D       +V+
Sbjct: 49  KEEFEKLQKERAQLKEKEEQASKEIKLLQEQISTLTQDLKKLKLEAEEKDKKVETA-EVH 107

Query: 796 FMSHIISEVD 805
            +S      D
Sbjct: 108 VVSLQKQAAD 117


>gi|326481262|gb|EGE05272.1| hypothetical protein TEQG_04428 [Trichophyton equinum CBS 127.97]
          Length = 1040

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 46/115 (40%), Gaps = 12/115 (10%)

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RR+     + A S  + + +  +     ++  Q     + + + +E+R+ +    K    
Sbjct: 564 RRVIIDKKKEAASDALQKKQLEEETQKRIRTQQLQEAEK-QRLLDEHRERERKRMKDEQD 622

Query: 777 --RKLQLNVEDLSCHK-IADVNFMSHIISEVDSKELKSV----MDALQKKIQSGI 824
             R+ +L  +       I  ++     + E+DS  L+++    ++  + ++   I
Sbjct: 623 RIRQAELKKQLEELKTGIKGIDVSEIDLEELDSNRLRAMKLAQLEKEKNELNEKI 677


>gi|326476042|gb|EGE00052.1| eukaryotic translation initiation factor 3 110 kDa subunit
           [Trichophyton tonsurans CBS 112818]
          Length = 1084

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 46/115 (40%), Gaps = 12/115 (10%)

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RR+     + A S  + + +  +     ++  Q     + + + +E+R+ +    K    
Sbjct: 608 RRVIIDKKKEAASDALQKKQLEEETQKRIRTQQLQEAEK-QRLLDEHRERERKRMKDEQD 666

Query: 777 --RKLQLNVEDLSCHK-IADVNFMSHIISEVDSKELKSV----MDALQKKIQSGI 824
             R+ +L  +       I  ++     + E+DS  L+++    ++  + ++   I
Sbjct: 667 RIRQAELKKQLEELKTGIKGIDVSEIDLEELDSNRLRAMKLAQLEKEKNELNEKI 721


>gi|308162836|gb|EFO65206.1| Kinesin-5 [Giardia lamblia P15]
          Length = 1066

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
             LKV+    V +V E+ EE  +L  +++  + K ++N   L   K      +   +  +
Sbjct: 491 EKLKVALNKTVEKVNELHEEKCRLYEKIVLGRDKERINAAQLDHFKANGAALILENVFGL 550

Query: 805 DSKELKSVMDALQKKIQSGII 825
           D   L+ ++D  +  I S II
Sbjct: 551 D--SLRHMID--KSGISSAII 567


>gi|150403166|ref|YP_001330460.1| phosphoesterase domain-containing protein [Methanococcus
           maripaludis C7]
 gi|150034196|gb|ABR66309.1| phosphoesterase RecJ domain protein [Methanococcus maripaludis C7]
          Length = 335

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 13/84 (15%)

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG- 882
             ++    ++++  + +   + +  + +   L    AK+L G GGG     A++ G N  
Sbjct: 251 AFVVAARKRDREIRISVRSRKSISKKVHMGALMERVAKILDGQGGG----HAEAAGLNAP 306

Query: 883 --------NKADQAIAGVASFLKK 898
                      D  ++     L++
Sbjct: 307 WDKEKTKEEAIDSVLSVCIKSLEE 330


>gi|15240258|ref|NP_200954.1| MIM (hypersensitive to MMS, irradiation and MMC); ATP binding
           [Arabidopsis thaliana]
 gi|10177176|dbj|BAB10445.1| SMC-like protein [Arabidopsis thaliana]
 gi|332010088|gb|AED97471.1| protein MIM [Arabidopsis thaliana]
          Length = 1057

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 6/101 (5%)

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
                  I+  +RR+E   G      +     +   +   LK  +  V  +VE +    +
Sbjct: 342 KCNYVQKIKDRVRRLERQVGDINEQTMKNTQAEQSEIEEKLKYLEQEV-EKVETLRSRLK 400

Query: 769 K-----LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           +     L+     RK   ++ED+  +      F++  I+++
Sbjct: 401 EEENCFLEKAFEGRKKMEHIEDMIKNHQKRQRFITSNINDL 441


>gi|332027796|gb|EGI67861.1| Dynein beta chain, ciliary [Acromyrmex echinatior]
          Length = 4463

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 50/136 (36%), Gaps = 13/136 (9%)

Query: 708  LYIVSESSIRAGIRRIEAITGQRARSHL--MGQDEKLKSLASFLKVSQGNVVGRVEEI-- 763
               ++ +     I     ++ +R  ++       E++      LK     +  RV  +  
Sbjct: 2995 AKFMAHAHTSVNIASRHYLSSERRYNYTTPKSFLEQISLYTRLLKTKTSELRARVARLEN 3054

Query: 764  -WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL---KSVMDALQKK 819
              ++ R   +   K K +L V+++   +  D       I  V+++++   K++ D     
Sbjct: 3055 GLDKLRSTAVQVDKLKKKLAVQEVELQQKNDAADALIAIVGVETEKVQKEKAIADE---- 3110

Query: 820  IQSGIIMLVGISKEKK 835
             +   + ++     KK
Sbjct: 3111 -EESKVAVIAEEVSKK 3125


>gi|322487917|emb|CBZ23161.1| hypothetical protein LMXM_03_0270 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1372

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 43/136 (31%), Gaps = 20/136 (14%)

Query: 722 RIEAITGQRAR--SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           R+ A T QRA   + +             L  +   +  RV    ++  +L+   A+   
Sbjct: 402 RLHAATQQRAELEAQVARLAADRDEARQELAANADELQQRVHAATQQRAELEAQVARLAA 461

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKS---VMDALQKKIQSGIIMLVGISKEKKA 836
             +                      ++ +L+         + ++++ +  L     E + 
Sbjct: 462 DRDEARQELA--------------ANADDLQQRLHAATQQRAELEAQVARLAADRDEARQ 507

Query: 837 SVLIVVTEDLLDRFNA 852
            +     +DL  R +A
Sbjct: 508 EL-AANADDLQQRLHA 522



 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 43/136 (31%), Gaps = 20/136 (14%)

Query: 722 RIEAITGQRAR--SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           R+ A T QRA   + +             L  +   +  R+    ++  +L+   A+   
Sbjct: 246 RLHAATQQRAELEAQVARLAADRDEARQELAANADELQQRLHAATQQRAELEAQVARLAA 305

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKS---VMDALQKKIQSGIIMLVGISKEKKA 836
             +                      ++ +L+         + ++++ +  L     E + 
Sbjct: 306 DRDEARQELA--------------ANADDLQQRLHAATQQRAELEAQVARLAADRDEARQ 351

Query: 837 SVLIVVTEDLLDRFNA 852
            +     +DL  R +A
Sbjct: 352 EL-AANADDLQQRLHA 366


>gi|296532280|ref|ZP_06895020.1| glycyl-tRNA synthetase alpha subunit [Roseomonas cervicalis ATCC
           49957]
 gi|296267396|gb|EFH13281.1| glycyl-tRNA synthetase alpha subunit [Roseomonas cervicalis ATCC
           49957]
          Length = 311

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
            QF    +     + K   +   GLER+A  +Q   N YD+D
Sbjct: 168 TQFTYFQQVGGIPVEKPCAELTYGLERLAMYIQGVENVYDLD 209


>gi|123475590|ref|XP_001320972.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121903788|gb|EAY08749.1| hypothetical protein TVAG_251750 [Trichomonas vaginalis G3]
          Length = 1197

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/221 (9%), Positives = 76/221 (34%), Gaps = 14/221 (6%)

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
              +     + + +           ++ N    + +  +   +   ++        L  K
Sbjct: 408 NQINNQAITIQYFEKKLKEAQNQNSNSGNKDYEKRINELEEKLRISESKNKELEMQLQNK 467

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             ++V    +   D  +                +      SES  ++   +I+ I  +  
Sbjct: 468 PKEQVDFNKISENDSKISELN-------KQISNLSSKLNESESRNKSLENKIKEIESKNK 520

Query: 732 RSHLMGQDEKLKSLASFLKV------SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            ++    + K+K L +  K       +  ++  +++++  + + L+   +++    + + 
Sbjct: 521 INNTSDLENKIKDLENKNKSLEKRINNSNDLESKIKDLESKNKLLEKKLSEQSNNSSSDL 580

Query: 786 LSCHKIADVNFMSHIISEVD-SKELKSVMDALQKKIQSGII 825
            S  K  +    + + +  +   E K +++ L+ +  + ++
Sbjct: 581 ESRVKDLEFKLKTAVQTGKELQNENKELLEKLKDQQSTPVL 621


>gi|106534280|gb|ABF82202.1| BdrC1 [Borrelia hermsii DAH]
          Length = 267

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 51/96 (53%), Gaps = 9/96 (9%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV- 794
              + K+ ++ + LK    ++  +++ + E    +++ +A+ +L+ +++D   +KI  V 
Sbjct: 107 NNLNIKIDNVRNELKSDIKDLDNKIDTV-ENNLNIKIDNARNELKSDIKDFD-NKIDTVE 164

Query: 795 NFMSHIISEV------DSKELKSVMDALQKKIQSGI 824
           N ++  I  V      D K+L + +D ++ +++S I
Sbjct: 165 NNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDI 200


>gi|227829408|ref|YP_002831187.1| hypothetical protein LS215_0404 [Sulfolobus islandicus L.S.2.15]
 gi|284996780|ref|YP_003418547.1| hypothetical protein LD85_0391 [Sulfolobus islandicus L.D.8.5]
 gi|227455855|gb|ACP34542.1| conserved hypothetical protein [Sulfolobus islandicus L.S.2.15]
 gi|284444675|gb|ADB86177.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
          Length = 153

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                  +EKLK +      +   +  +++E+ +E  K ++   K KL+     +   ++
Sbjct: 87  LKDFDECNEKLKEVEEKCNKNLDELEKKLDELQKELDKKEVEV-KEKLKTLDNLIKIMEV 145

Query: 792 A 792
            
Sbjct: 146 N 146


>gi|255077874|ref|XP_002502517.1| predicted protein [Micromonas sp. RCC299]
 gi|226517782|gb|ACO63775.1| predicted protein [Micromonas sp. RCC299]
          Length = 1534

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 34/157 (21%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
            S T E+       E  +R    RIE+  G           E    L+  L      +  
Sbjct: 540 ASRTAEV----ARYEERVRELNERIESEVG-----------ELEIELSGQLDARTAEL-- 582

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF-MSHIISEVDSKELKSVMDALQ 817
             E +  E   L+      K +L+  + +  K  D        I+E D+K LK     ++
Sbjct: 583 --ESVKAEEAALRKQLEAVKKELDSANDNLGKAKDFRAKAKERIAEQDAK-LKDSDARIK 639

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
                  +       E K        +   D+ +A +
Sbjct: 640 DAEAKAAVA------EGKV-------KGAQDKASAAE 663


>gi|196037212|ref|ZP_03104525.1| mobilization protein [Bacillus cereus W]
 gi|195990179|gb|EDX54234.1| mobilization protein [Bacillus cereus W]
          Length = 401

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/260 (10%), Positives = 75/260 (28%), Gaps = 24/260 (9%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            +V     F+        ++     +     + +   +   +     + E+        +
Sbjct: 75  FIVTSDRSFFERLNDDNLNSQKEFFEEAYSFLKERYGEQNIVHAVVHLDEKTPHMHVGMV 134

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            +T + +   +   N      L       +          ++ D    +    K +T  E
Sbjct: 135 PVTEENKLSAKQIFNRKELVSLQDDFHAHMVKKGFDLERGVSSDKKHIETARFKALTVKE 194

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              + ++           + + M +                    R V+V  +   +   
Sbjct: 195 EVQVLEDTLVEKELEKQQIEKSMQQMKNRLDDLK-----------RAVNVGKKVENMSVK 243

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
              G           L+   +        +RI+ +   +A      ++E L+     LKV
Sbjct: 244 EKGG-----------LIRSKTVEIGVEDFQRIKTLA--KASEAFKRENETLQRQNHALKV 290

Query: 752 SQGNVVGRVEEIWEEYRKLQ 771
           +  ++   V+ + +E ++L+
Sbjct: 291 NNTDLHTTVKHLEKEKKELE 310


>gi|171688462|ref|XP_001909171.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944193|emb|CAP70303.1| unnamed protein product [Podospora anserina S mat+]
          Length = 496

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGR-VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
              +   +E +K L +  K  +  +  + +EE+ E+  +L+       ++L  E  + ++
Sbjct: 95  FDQIKRHEETVKRLINESKADRAKLPVKNLEELEEKIARLERDVNSGMMKLVDEKKALNE 154

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           I+++     +    + +  + ++D  + KI+ 
Sbjct: 155 ISNLRKQKKLFGGFEQQ--QKLIDEHKAKIKE 184


>gi|115388521|ref|XP_001211766.1| hypothetical protein ATEG_02588 [Aspergillus terreus NIH2624]
 gi|121740804|sp|Q0CUP6|EIF3A_ASPTN RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 110 kDa subunit homolog; Short=eIF3
           p110; AltName: Full=Translation initiation factor eIF3,
           p110 subunit homolog
 gi|114195850|gb|EAU37550.1| hypothetical protein ATEG_02588 [Aspergillus terreus NIH2624]
          Length = 1040

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 48/123 (39%), Gaps = 10/123 (8%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
               T +   L   ++       RR+     + A +  + + ++ +     ++  Q    
Sbjct: 584 QAKQTAQARALAGAAKEHEETLARRVIIEKKKEAATDALQRKQREEETRKRIRTQQLQEA 643

Query: 758 GRVEEIWEEYRKLQLI--------HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
            + + + +E R+ +            +++L+  +E+L    +  ++     + ++D+  L
Sbjct: 644 EK-QRLLDEQREREKKRIKDEQDRIRQQELKKQLEELKSG-VKGIDINEIDLQDLDANRL 701

Query: 810 KSV 812
           +++
Sbjct: 702 RAM 704


>gi|6606259|gb|AAF19146.1|AF143476_1 BdrC1 [Borrelia hermsii]
          Length = 238

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 51/96 (53%), Gaps = 9/96 (9%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV- 794
              + K+ ++ + LK    ++  +++ + E    +++ + + +L+ +++DL  +KI  V 
Sbjct: 78  NNLNIKIDNVRNELKSDIKDLDNKIDTV-ENNLNIKIDNVRNELKSDIKDLD-NKIDTVE 135

Query: 795 NFMSHIISEV------DSKELKSVMDALQKKIQSGI 824
           N ++  I  V      D K+L + +D ++ +++S I
Sbjct: 136 NNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDI 171



 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 42/101 (41%), Gaps = 12/101 (11%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR------KLQLNVEDLSCH 789
                 +K L + +   + N+  +++ +  E +        +       L + ++++   
Sbjct: 89  NELKSDIKDLDNKIDTVENNLNIKIDNVRNELKSDIKDLDNKIDTVENNLNIKIDNVRNE 148

Query: 790 KIADVNFMSHIISEV------DSKELKSVMDALQKKIQSGI 824
             +D+  + + I  V      D K+L + +D ++ +++S I
Sbjct: 149 LKSDIKDLDNKIDNVRNELKSDIKDLDNKIDNVRNELKSDI 189


>gi|73964395|ref|XP_537539.2| PREDICTED: similar to DVL-binding protein DAPLE [Canis familiaris]
          Length = 2361

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 43/114 (37%), Gaps = 26/114 (22%)

Query: 726 ITGQRARSHLMGQ----DEKLKSLASFLKV-------------SQGNVVGRVEEIWEEYR 768
           ++G+     +  +     + +   +S L                    V RVEE+ +E  
Sbjct: 509 VSGEARAKDIEKENKALHQTVTETSSRLSKLEFEKHQLQKDFEQVKEKVERVEELEKELH 568

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIA----DVNFMSHIISEVDSKELKSVMDALQK 818
           +L+  + K   ++     +  K+     +   ++     +++++L+  +D LQ 
Sbjct: 569 RLEKENEKLAQKVASLKTATEKVDTLERESRGLA-----LENRKLRKSLDTLQN 617


>gi|871048|emb|CAA56212.1| HPSR2 - heavy chain potential motor protein [Giardia intestinalis]
 gi|1583267|prf||2120344A nucleotide-binding head stalk protein
          Length = 1620

 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 52/116 (44%), Gaps = 9/116 (7%)

Query: 739  DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
            ++++ +LA+ L   +      +     +Y++LQ      + ++     S    A+++ + 
Sbjct: 931  NDRVANLAAELNKQKNETEELLAFKDLQYKQLQKQLEDSRTEVTEATSSGR--AEISRLQ 988

Query: 799  HIISEVDSKELKSVM------DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
              I  +    L++ +      DAL+  + S   +L+  S E K +++  + +DL +
Sbjct: 989  LQIDNLGEALLQAQIEYAQKEDALKDDLNSAKAVLLAESAE-KDAIISTLKKDLTN 1043


>gi|312075423|ref|XP_003140410.1| myosin xviiia [Loa loa]
 gi|307764429|gb|EFO23663.1| myosin xviiia [Loa loa]
          Length = 1505

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 730  RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            RA+  +    +    L   L+     +  + +    + + L+    K + +    +    
Sbjct: 975  RAQKAVQQLKDVENELKD-LRAKNDALKKKYKNFDLDLKTLKDNSEKERKERIKAERERE 1033

Query: 790  KI---ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     +  F      + ++ EL+  +  L+K+++ 
Sbjct: 1034 EATSNNERRFTELQNLKAENGELRQSVAKLRKELEE 1069


>gi|260798851|ref|XP_002594413.1| hypothetical protein BRAFLDRAFT_166372 [Branchiostoma floridae]
 gi|229279647|gb|EEN50424.1| hypothetical protein BRAFLDRAFT_166372 [Branchiostoma floridae]
          Length = 461

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           L  ++++ + +   L+     V      + ++  E +KL+ ++A+    L  E+     +
Sbjct: 68  LSKREKERQEVEDKLRAMTEEVAVNDELIGKLGREKKKLEELNAQTLDDLQSEEDKTQNL 127

Query: 792 ADVNF-MSHIISEVD-----SKELKSVMDALQKKIQSGI 824
             +   +   + +++      K++++ +D +++K+++ +
Sbjct: 128 TKLKVKLEQTLDDLEDNLEHDKKIRADVDRVKRKLENDL 166


>gi|152991421|ref|YP_001357143.1| hypothetical protein NIS_1680 [Nitratiruptor sp. SB155-2]
 gi|151423282|dbj|BAF70786.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 662

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 27/74 (36%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +      +     L  +    K    N+  ++E++  E + L+    +  ++     +  
Sbjct: 418 KELFDSHLQNLNNLSQMIGKQKEKIENLNQKIEKLNTEIKSLKREIGQYSVREFNNSIVM 477

Query: 789 HKIADVNFMSHIIS 802
            KI  +N +  ++ 
Sbjct: 478 KKIETLNGIIEVVK 491


>gi|123467685|ref|XP_001317261.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121899991|gb|EAY05038.1| hypothetical protein TVAG_191350 [Trichomonas vaginalis G3]
          Length = 959

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 52/528 (9%), Positives = 145/528 (27%), Gaps = 40/528 (7%)

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++++ +     +          +     E         Q   ++ +  + E E+  +   
Sbjct: 234 LIKKYLEIMSNIQPHVIQNSKQIATYSKEYEQDLLMNEQHNEMVTKEFQEEIEKIKEQQI 293

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +        +  L K+E+ +   +FK             D      +  +   +F +  E
Sbjct: 294 QVQKSQAMQI-ELLKNELTSLRNSFKAEMDEAEKNKNSTDGNIENVIKNLAASNFKEEEE 352

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            +++ AR         T                     L R ++   +D K    K   +
Sbjct: 353 RRKAIAREQEAKEKYMTI--------------------LTRDTQLTMDDLKADILKAKDE 392

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
           + +    + KAI  + E  E     QK  +  +     A+ G +L ++     +  +   
Sbjct: 393 IDDENMILQKAIDSETERFE----NQKRYLTSNHEELLAQKGKELEESSVMESNYRKADQ 448

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               +K     +                      +   + + N +    + +  +     
Sbjct: 449 ERKTQKTMLDTLMRIFKTSMENIVVSERDEIRQLELNYEKNKNET-QTTVDNEYNAKTRF 507

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
                           +   ++     +L++          +++  +     +E    + 
Sbjct: 508 TSQSINDLQNQYNEEMERIKNERERDIDLQTEMIQTEFNNMKSVDEIRDEYVKEYQKLTD 567

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               +  K     +       +       +           +        +       R 
Sbjct: 568 EFESINEKPTISDKYSEKNLNEIKAKKDEIKIKLQNDKETMLDKYKTDFANEQS----RH 623

Query: 724 EA--ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           EA  +T   A +  +    +L+ +     V       +++E  E+ ++LQL       + 
Sbjct: 624 EAKLLTYISALNETIDVGPELQRIREKENVKITKYNTQIQEYSEKLKELQLEFKPATGEA 683

Query: 782 NVE--------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            V+        +     + +             K++K ++D ++K+  
Sbjct: 684 AVDCPEIQELRNKLSEALKNQKEQLTKARNESEKDIKELIDEIKKQEG 731


>gi|291396554|ref|XP_002714503.1| PREDICTED: KIAA1009 protein [Oryctolagus cuniculus]
          Length = 1400

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 55/143 (38%), Gaps = 15/143 (10%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-----VSQGNVVG 758
           E+ L  +  E         I   TG++     + ++   + ++   K          ++ 
Sbjct: 811 EVDLEKMKKERDQAKDQ--IAYATGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLD 868

Query: 759 R----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIADVNFMSHIISEVDSKELKSVM 813
           R    ++E  EE  KL+L   K K +     +    ++ D    +  I +++ +++K + 
Sbjct: 869 RDAVRLKEANEEIEKLKLEIEKLKAESGNPSIQQKMRLKDRAVDAKKIQDLE-RQVKEME 927

Query: 814 DALQKKIQSG--IIMLVGISKEK 834
             L+++  +    ++L   +   
Sbjct: 928 GILKRRYPNSLPALILAASAAGD 950


>gi|227889836|ref|ZP_04007641.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
 gi|227849700|gb|EEJ59786.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
          Length = 281

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           I  I G  A        +  ++ ++ L        N+  + +++ ++ ++LQ      K 
Sbjct: 135 IAIIFGISACQAHNDTVQNEQAQSNALNNTNSKLDNLSEQNKQLMQQNKELQSAINTYKQ 194

Query: 780 QLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQ 821
             N E+L  +++  +   +  +     +++ L++ +D L   I 
Sbjct: 195 DQNKEELQ-NQLNQIKTENEQLKNNAANNQALQNQIDQLGSTID 237


>gi|222137349|gb|ACM45239.1| pneumococcal surface protein A [Streptococcus pneumoniae]
          Length = 473

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK  +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 203 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 256

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + EL++ +  L+K+I +  I+L G   E 
Sbjct: 257 KADELQNKVADLEKEISNLEILLGGADPED 286


>gi|145483343|ref|XP_001427694.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394777|emb|CAK60296.1| unnamed protein product [Paramecium tetraurelia]
          Length = 194

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-KLQL 781
           +E + G+     L   DE L+ L   +K     +  +V ++ +E   L+    +   ++ 
Sbjct: 26  LELLNGRDLEDVLNDLDE-LEKLRKLVK----ELQAKVSDLQKELDALKKKSKELDDMKK 80

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            + D    ++           + D K  K + DAL++
Sbjct: 81  KLGDDPNKEVD--KLRKQQKDQEDIK--KKLADALKE 113


>gi|118359750|ref|XP_001013113.1| SMC family, C-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89294880|gb|EAR92868.1| SMC family, C-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1937

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIAD 793
           L  + +K +   + +      +  ++     E  K Q     +K Q+         K   
Sbjct: 425 LKEKVKKSEQRLNLVNQEIEKLQNQINSFQTESNKAQKTINDKKNQIQKLRQEQLEKRKT 484

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +N     + +++  ++K  +D +QK+++SG+I
Sbjct: 485 INDKKIELEDLN-NQIKKRVDDIQKQLKSGLI 515


>gi|67462699|ref|XP_648011.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56463872|gb|EAL42625.1| hypothetical protein EHI_154440 [Entamoeba histolytica HM-1:IMSS]
          Length = 488

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/194 (9%), Positives = 63/194 (32%), Gaps = 2/194 (1%)

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +T      + D +      + P   + +    +        +   ++   +++     
Sbjct: 122 ERMTPFCRIVLNDLLTQYNIIHYPSFKQTITFFKSSILENRLSIKILFSIIYQLIQENLL 181

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSI-RAGIRRIEAITGQRARSHLMGQDEKLK 743
                        H  +    +    + +  I      R    + Q ++  +   ++  +
Sbjct: 182 SNHQVLIECGVCNHPINGKYPICCECLMKELIDNEQYYRCLNESSQYSQKLIEVLEKNEE 241

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
            +   +K  +  VV ++E+   E  + Q    ++K  +        ++   +FM      
Sbjct: 242 EIEQKIK-KEEEVVKKLEKEVNELTEEQKTLEEKKRGITQMKEIEKEVIRKHFMVMNEMN 300

Query: 804 VDSKELKSVMDALQ 817
            +++++K V +  +
Sbjct: 301 KETQDIKEVFEQNK 314


>gi|68487382|ref|XP_712462.1| hypothetical protein CaO19.8792 [Candida albicans SC5314]
 gi|68487674|ref|XP_712318.1| hypothetical protein CaO19.1201 [Candida albicans SC5314]
 gi|46433696|gb|EAK93128.1| hypothetical protein CaO19.1201 [Candida albicans SC5314]
 gi|46433851|gb|EAK93279.1| hypothetical protein CaO19.8792 [Candida albicans SC5314]
          Length = 496

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 720 IRRIEAITGQRARSH-----LMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQ 771
           I  I  IT  R         +    ++   LA  LK + G++     R++++  E + L+
Sbjct: 90  IENINFITSNRPLQAQLFSQINDMKKERTILAERLKSNVGDLQQFKERLKQLKSELKPLE 149

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNF 796
                 + ++  +  S   + DV  
Sbjct: 150 KQVKTIQEKIYAKAESLPNLIDVTV 174


>gi|291320572|ref|YP_003515836.1| hypothetical protein MAGa6790 [Mycoplasma agalactiae]
 gi|290752907|emb|CBH40882.1| Hypothetical protein MAGa6790 [Mycoplasma agalactiae]
          Length = 1226

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 50/113 (44%), Gaps = 15/113 (13%)

Query: 724 EAITGQRARSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           EA+  +           K ++ + +  +    N++    ++ +E+++ +   AK++  L 
Sbjct: 790 EALASKETEEIFENGYAKAIEEVKAKYEKMIANLMAEKNKLNKEWKETEADLAKKEADLE 849

Query: 783 VEDLSCHKIADVNF-------MSHIISEVDSKELKSVMD-----ALQKKIQSG 823
           ++     +IAD+N        +   +   ++ ELK ++D      ++ +++S 
Sbjct: 850 ID--KNKRIADINSNYEKNKHILEELKNKNNDELKKLLDANSNKDIKSELKSA 900


>gi|189502005|ref|YP_001957722.1| hypothetical protein Aasi_0592 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497446|gb|ACE05993.1| hypothetical protein Aasi_0592 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 1574

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ----LNVED 785
           + + +    + +LK     LK     +   +E++ EE        A ++L+    +  + 
Sbjct: 272 KLKEYQARLENELKENLKKLKEDLEKLQEDLEKLQEEDDTKVKEKASKQLKHELLIKYKR 331

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +   K       + ++   ++K  K  +  L+ K+
Sbjct: 332 IELQKKNPTQLKNELLEIYETKLEKKDLVQLRNKL 366


>gi|193216599|ref|YP_001999841.1| hypothetical lipoprotein [Mycoplasma arthritidis 158L3-1]
 gi|90019044|gb|AAT66126.2| MlpE [Mycoplasma arthritidis]
 gi|193001922|gb|ACF07137.1| hypothetical lipoprotein [Mycoplasma arthritidis 158L3-1]
          Length = 271

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 11/101 (10%)

Query: 729 QRARSHLMGQDEKLKSLASF-----LKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQ 780
           +  +      ++ LK + +      LK     +V    ++E I +E R L+L   K+++ 
Sbjct: 138 EDVKEEFKKAEDALKEIGNKFHFRSLKDGFEKLVSELKKLENILQEKRLLELNDLKKEIA 197

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQK 818
              E++     AD N       +   K   ELK   DAL++
Sbjct: 198 KKQEEIKKTIKADNNIDKEEAKKALPKIKEELKKAEDALKE 238


>gi|118365997|ref|XP_001016217.1| Protein kinase domain containing protein [Tetrahymena thermophila]
 gi|89297984|gb|EAR95972.1| Protein kinase domain containing protein [Tetrahymena thermophila
           SB210]
          Length = 1504

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEY--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           K     L+        +++++ EE   +K +     ++ QL  +     +I  +      
Sbjct: 817 KEAEEKLRKQLEEEQEKIKKLQEELLKKKKEDEEITKQKQLQDQKAKEEEIRQLKEKQEQ 876

Query: 801 ISEVDSKELKSVMDAL--QKKI 820
           ++E + K+ K +   L  ++K+
Sbjct: 877 LAEQERKQ-KEIAAELERKEKL 897


>gi|313226269|emb|CBY21413.1| unnamed protein product [Oikopleura dioica]
          Length = 793

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 19/122 (15%)

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             +  G  R++ ++   A   L  Q+EKL      LK +       V    EE  KL+ +
Sbjct: 214 EELENGQERVDRLS--DANDELKEQNEKLSKELDDLKNNNKEPEESV--FREENEKLEKV 269

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEV------------DSKELKSV---MDALQK 818
               + ++         + D   +     ++             +++++ +   +++L+K
Sbjct: 270 IEALRSEIRNISTDSESVQDFKNLLEANEKLKEEICALESIVTPAEDIQKLNEEINSLKK 329

Query: 819 KI 820
           +I
Sbjct: 330 QI 331


>gi|307264872|ref|ZP_07546434.1| MgtE intracellular region [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920130|gb|EFN50342.1| MgtE intracellular region [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 192

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 34/138 (24%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           +  ++ ++  L + LK  +  +            ++  +  E  K+Q   +  K QL  +
Sbjct: 63  VQDKNAEIAKLTNELKAKEQQIADYEAKLKEKDDQINALKAELEKIQNESSTLKQQLENK 122

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             S   I      +     +D               Q+   +   +S E    +L  + +
Sbjct: 123 QASLKDI------ATYYQNMDP--------------QNAAQIFNNMSDEDVIKILSYMNK 162

Query: 845 DLLDRF----NAVDLARL 858
           D   +      A   A++
Sbjct: 163 DSASKILESLKADKAAKI 180


>gi|255730447|ref|XP_002550148.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132105|gb|EER31663.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 220

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 26/129 (20%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM----- 797
           + +   LK    N+  +V +  E  ++     A        E  +        F      
Sbjct: 12  EQIKKDLKKDAKNIEKKVAQESENLKEQGKEKANELSAKGQEKANELSAKGQEFFDEASA 71

Query: 798 --SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
                + E + K  K  ++  +K++         + +E K         DLL +F  V  
Sbjct: 72  KGKEFLEEANDKS-KEFLEEAKKELNH-------LEEEGK---------DLLSKF--VKW 112

Query: 856 ARLSAKVLG 864
            + +++ +G
Sbjct: 113 VKATSRSVG 121


>gi|159113503|ref|XP_001706978.1| Nucleotide-binding head-stalk protein, putative [Giardia lamblia ATCC
            50803]
 gi|157435079|gb|EDO79304.1| Nucleotide-binding head-stalk protein, putative [Giardia lamblia ATCC
            50803]
          Length = 1620

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 52/116 (44%), Gaps = 9/116 (7%)

Query: 739  DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
            ++++ +LA+ L   +      +     +Y++LQ      + ++     S    A+++ + 
Sbjct: 931  NDRVANLAAELNKQKNETEELLAFKDLQYKQLQKQLEDSRTEVTEATSSGR--AEISRLQ 988

Query: 799  HIISEVDSKELKSVM------DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
              I  +    L++ +      DAL+  + S   +L+  S E K +++  + +DL +
Sbjct: 989  LQIDNLGEALLQAQIEYAQKEDALKDDLNSAKAVLLAESAE-KDAIISTLKKDLTN 1043


>gi|34763238|ref|ZP_00144200.1| EXONUCLEASE SBCC [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887091|gb|EAA24200.1| EXONUCLEASE SBCC [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 921

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           +    D  LK      K  + N+  ++  + E     + I    K +  VE     +  +
Sbjct: 165 YKEMYDSFLKEAIDKYKSEKENLDSKINSLKENMEDKEQITNFLKEEKEVEKNLQDRFKN 224

Query: 794 VNFMSHIISEVDSKE-------LKSVMDALQKK 819
           +N +S  +   + K+       L +++  ++ +
Sbjct: 225 INVVSKNLEN-EIKDYETTEIELNNLIKNIKDE 256


>gi|312868408|ref|ZP_07728608.1| chromosome segregation protein SMC [Streptococcus parasanguinis
           F0405]
 gi|311096153|gb|EFQ54397.1| chromosome segregation protein SMC [Streptococcus parasanguinis
           F0405]
          Length = 1178

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVV-GRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           QRA+       E+LK +   L+  +  +     + + EE   L     + +LQ    +  
Sbjct: 727 QRAQLAYQQSQEQLKEIQELLEALKSELATDATQSLQEEQEALTEQLVEIELQKENLNRD 786

Query: 788 CHKIA-DVNFMSHIISEV 804
              +  D + +   +  +
Sbjct: 787 IETMKSDKDVLQQKVQNL 804


>gi|300859296|ref|YP_003784279.1| hypothetical protein cpfrc_01879 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686750|gb|ADK29672.1| putative secreted protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302331545|gb|ADL21739.1| Hypothetical protein Cp1002_1878 [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277235|gb|ADO27134.1| Hypothetical protein CpI19_1888 [Corynebacterium pseudotuberculosis
           I19]
          Length = 269

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 23/161 (14%)

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI------RAGIRRIE--AITGQR 730
            +    D      ++   TH   T  +  ++   E +I         + R+E      +R
Sbjct: 59  YTSLTHDSRASLLSIGRCTHPEYTVLLNTVFEHLEETIDQVDHLADKVDRLEEKIQADER 118

Query: 731 ARSHLMG-------QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
              HL         + +  K     L         ++EE+ E+    +    K   +LN 
Sbjct: 119 EIDHLHKNLSISRNELDATKRENRELNTKIDQSQKKIEELKEKNLLTEDELDKVTAKLNA 178

Query: 784 EDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQS 822
            +    +      ++H + ++  + KELK     LQK+   
Sbjct: 179 AEAKIKE------LTHKVQKLEKEVKELKERNAELQKENHD 213


>gi|224076706|ref|XP_002304984.1| predicted protein [Populus trichocarpa]
 gi|222847948|gb|EEE85495.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 23/45 (51%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           +L+  +  LK S  ++  +++E+  E  +L+    K K++    +
Sbjct: 132 QLRDESQKLKESIESLQEKIDELKAEKNELRDEKQKLKMEKENLE 176


>gi|317127421|ref|YP_004093703.1| LPXTG-motif cell wall anchor domain protein [Bacillus
            cellulosilyticus DSM 2522]
 gi|315472369|gb|ADU28972.1| LPXTG-motif cell wall anchor domain protein [Bacillus
            cellulosilyticus DSM 2522]
          Length = 1287

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            T E+          I     RI  + G    + L  +  +++ L   LK +   +   V 
Sbjct: 1131 TDELQQRINELMELIAELQARIADLEGSSEIADLENRLSEIEGLLEELKSNFNELEEYVS 1190

Query: 762  EIWEEYRKLQLIHAKRKLQLN 782
             +    + L+   A  K QL 
Sbjct: 1191 HLEALIKDLKDEIAALKAQLE 1211


>gi|311244038|ref|XP_003121296.1| PREDICTED: coiled-coil domain-containing protein C6orf204-like [Sus
           scrofa]
          Length = 559

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 714 SSIRAGIRRIE----AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
              +   RRIE     +        +  Q  +L+ L    K  Q  ++   +E+ +  ++
Sbjct: 253 EQNKEKQRRIETLEKYLADLPTLDDVQSQSLQLQFLEEKNKSLQETLIETEKELEDFKKR 312

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNF-MSHIISE------VDSKELKSVMDALQKKIQS 822
            Q   A+   Q   E      +  +   +   + +      +D+K+L++  D L+++ ++
Sbjct: 313 CQEKEAQLLCQKKKEKELVTTVQSLQQKVERCLEDGIRLPMLDAKQLQNENDNLREQNEN 372

Query: 823 G 823
            
Sbjct: 373 A 373


>gi|254498486|ref|ZP_05111214.1| alanyl tRNA synthetase [Legionella drancourtii LLAP12]
 gi|254352302|gb|EET11109.1| alanyl tRNA synthetase [Legionella drancourtii LLAP12]
          Length = 230

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 31/216 (14%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
               V+F++T  ++ +GGQ  D     G  +     +       +   H       L+  
Sbjct: 22  DNNYVLFEETIVFSFSGGQESDHAYVNGFPVIDSKIEDNLIYYVLQDEH------NLKPG 75

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + + ID+  R +L   H A  L+   ++  L   + + G+ I     R D    K I+
Sbjct: 76  DVVTMKIDWPRRYRLMRLHFAAELILELVTQELK--LEKIGAHIAEFKARIDFFCDKNIS 133

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
                         + +++      + ++D       + L     ++ R   +E      
Sbjct: 134 -------------FLFESMLSDYHKIIQQDLKIKTGFSDL----QNQRRFWEIEGF---- 172

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            S   CGGTHV ST E+  + +    +I  G  RIE
Sbjct: 173 -SKVACGGTHVKSTSEVGFITLKRV-NIGGGKERIE 206


>gi|226950616|ref|YP_002805707.1| von Willebrand factor type A domain protein [Clostridium botulinum
           A2 str. Kyoto]
 gi|226843705|gb|ACO86371.1| von Willebrand factor type A domain protein [Clostridium botulinum
           A2 str. Kyoto]
          Length = 578

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVG-----RVEEIWEEYRKLQLIHAKRKLQLNVE-D 785
              L  + ++L+     LK +  ++       ++E+I EE   L+      + +L+ + +
Sbjct: 199 IKDLSQEKQELEENIENLKNNASDLSEEDMKNKIEQIDEELENLEKQADNLEEELSDKLE 258

Query: 786 LSCHKIADV-NFMSHIISEVDSKELKSVMDALQK 818
            S   I ++   M+   +E + KE++     ++ 
Sbjct: 259 KSEEDIENLSKEMAEAFNEAE-KEVREATSYVKD 291


>gi|219887571|gb|ACL54160.1| unknown [Zea mays]
 gi|223944725|gb|ACN26446.1| unknown [Zea mays]
          Length = 160

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           +L+S A  LK + G++  +++E+  E  +L+    K KL+    +
Sbjct: 40  QLRSEAQQLKETNGSLEEKIKELKAEKDELRDEKQKLKLEKESLE 84


>gi|226495521|ref|NP_001146503.1| hypothetical protein LOC100280093 [Zea mays]
 gi|195655439|gb|ACG47187.1| bHLH transcription factor [Zea mays]
          Length = 257

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           +L+S A  LK + G++  +++E+  E  +L+    K KL+    +
Sbjct: 137 QLRSEAQQLKETNGSLEEKIKELKAEKDELRDEKQKLKLEKESLE 181


>gi|167390062|ref|XP_001739190.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165897167|gb|EDR24404.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 539

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              ++ + ++++     +K     V   + E   E +++     + K +    +      
Sbjct: 231 LDDIVKERQEVEETLQKIKTRIEKVEDYISEGKSELKEMIKEKEELKRKQRSLERQ---- 286

Query: 792 ADVNFMSHIISEVDSKE 808
                +   + ++D+ +
Sbjct: 287 ---KVIREKVKDIDAND 300


>gi|148710090|gb|EDL42036.1| STE20-like kinase (yeast), isoform CRA_a [Mus musculus]
          Length = 1293

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              A+     Q+++L    + LK  +  V+  VE+     R+L+    KR+ +   +    
Sbjct: 960  DEAKRIKGEQEKELSKFQNVLKNRKKEVMNEVEKAP---RELRRELTKRRKEELAQSQHA 1016

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             +     F+     E+D   LK ++   + ++ +
Sbjct: 1017 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 1046


>gi|126310943|ref|XP_001379734.1| PREDICTED: similar to chromosome 6 open reading frame 204
           [Monodelphis domestica]
          Length = 887

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 53/134 (39%), Gaps = 19/134 (14%)

Query: 714 SSIRAGIRRIE----AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
              +   RRIE     +        +  Q ++L+     L+    N+   ++++ ++  +
Sbjct: 583 EQNKEKQRRIETLEKYLADLPTLDDVQNQGQQLQ----ILEEKNKNLEETIKDLEKKIGE 638

Query: 770 LQLIHAKRKLQLNVEDLSCHK-IADVNFMSHIISE----------VDSKELKSVMDALQK 818
           ++  + ++++QL  +     + +  V  +   +            +D+K+L+   + L++
Sbjct: 639 IRTQYEEKEVQLTCQRKKEKELVTTVQSLQQKVERCLEDGIRLPILDAKQLQDENEQLKE 698

Query: 819 KIQSGIIMLVGISK 832
           + +    ++     
Sbjct: 699 QNEKASKVIASQQN 712


>gi|6689246|emb|CAB65411.1| M-like protein [Streptococcus dysgalactiae subsp. dysgalactiae]
          Length = 548

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 19/167 (11%)

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHL-----MGQDEKLKSLASFLKVSQGNVVGR 759
           ++L     E+  R G  R E I G      L        DE   +    L      +  +
Sbjct: 82  VLLFKAKEEAMNRIGRLRNE-IKGLEKERDLFIDVANKTDEARAATQEKLNNKVSELSEK 140

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL---KSVMDAL 816
            + +     + + +           D +     D+        +  +  L   K + D L
Sbjct: 141 EKALKATLAETKKLSTDLSSAQKERDTAFKVSKDLADKLAQSEKAKTNALNVSKDLADKL 200

Query: 817 QKKIQSGIIML---------VGISKEKKASVLIVVTEDLLDRFNAVD 854
               +     L         +  S++ KA+  + V++DL D+  A +
Sbjct: 201 ADSEKGKANALNVSKDLADKLAESEKAKAN-ALNVSKDLADKLAAAE 246


>gi|71406598|ref|XP_805824.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70869381|gb|EAN83973.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 846

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E    +RA+  +    +++  L + LK  +            + R L+  H K  +Q  
Sbjct: 101 LEFAADERAKEKVAEIQKEVNRLETALKTVKEEREELKISTEHQLRLLKSQHEKELIQAQ 160

Query: 783 VEDLSCHK--IADVNFMSHIISEVDSKELKSV----------MDALQKKIQSG 823
            E    +   +         + +V     + +          ++ L+ ++Q+ 
Sbjct: 161 TEKRLLNDRCVELTRIYQQQVDDVKKAAARELEYVESLCNTRVEQLKSELQAA 213


>gi|239608749|gb|EEQ85736.1| spindle-pole body protein [Ajellomyces dermatitidis ER-3]
          Length = 1236

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
                +   + E LK      K S   +   ++   E+   LQ    + + +       C
Sbjct: 347 NELVENQKEEIENLKEKQQDEKSSVAELEAELQRAKEQLEDLQKSLEEARSEAREAKSKC 406

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            +  +    +        ++LK + D +  K
Sbjct: 407 EEAIEEKEQAV-------EDLKELQDEMTDK 430


>gi|212694395|ref|ZP_03302523.1| hypothetical protein BACDOR_03922 [Bacteroides dorei DSM 17855]
 gi|212662896|gb|EEB23470.1| hypothetical protein BACDOR_03922 [Bacteroides dorei DSM 17855]
          Length = 427

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 710 IVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
             +E+  + G++R   I G +AR         + K LA  LK    ++  + E   EE +
Sbjct: 183 TYAEAMAKYGLQR--GIDGSKARHKSTQQYYNETKKLADSLKAEVVDLQRQKETAQEELK 240

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           + +      KL+      + +    V ++ 
Sbjct: 241 RAKKEIQTEKLKEAETTAAANIAESVGYLF 270


>gi|193216781|ref|YP_002000023.1| massive surface protein MspF [Mycoplasma arthritidis 158L3-1]
 gi|193002104|gb|ACF07319.1| massive surface protein MspF [Mycoplasma arthritidis 158L3-1]
          Length = 2993

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY------RKLQLIHAKRKLQLN 782
           +        + + L+   + LK     ++  +E++  +         +Q +  K K   N
Sbjct: 139 KETLKEAKDKLKTLQDREAKLKEDAKKLLEEIEKLVAKEPTTTSPLAMQALINKLKDLQN 198

Query: 783 VEDLSCHKIADVNFM--SHIISEVDSKELKSVMDALQKKIQSG 823
             +    ++ +   +  +  +S+ + K +K  ++ LQ ++   
Sbjct: 199 ASEALQKELNNYRLIEDAKKLSDANLK-IKDAINRLQDRLAKD 240



 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 23/158 (14%)

Query: 729 QRARSHLMGQDEKLKSL--ASFLKVSQGNVVGRVEEIW-------EEYRKL--QLIHAKR 777
           Q A   L  +    + +  A  L  +   +   +  +        EE +KL  + I    
Sbjct: 197 QNASEALQKELNNYRLIEDAKKLSDANLKIKDAINRLQDRLAKDPEELKKLTDEKISNLT 256

Query: 778 KLQLNVEDLSCHK---------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           K +  VED +              D+     +  + D+  L  +   L+  I+    +L 
Sbjct: 257 KSKKAVEDANNINDLPNALESLKKDIEAAKKLKEQTDANALSDLSSKLENAIKDAEGIL- 315

Query: 829 GISKEKKASVLIVVTEDLLDRFNA-VDLARLSAKVLGG 865
             + E K   +    +++ D+ +A V+  +  A+ + G
Sbjct: 316 -KAGETKKQEIEKTNQEIKDKIDALVEKIKKDAEDVNG 352


>gi|188996773|ref|YP_001931024.1| conserved hypothetical protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931840|gb|ACD66470.1| conserved hypothetical protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 145

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  + EKLK +   +K +       +E+I +E + L+L+  + +          +K 
Sbjct: 18  VEELKKEAEKLKQIRDEIKATYQKNEALLEQIKKEKQALELLKKEIEESKKKIQDERYKK 77

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR 849
                ++ +  ++D      +      K++S      ++    EKKA+ ++    D  D 
Sbjct: 78  -----LAKVFEKMDP----EMAGQKLSKMESAEDAAYIIFNMNEKKAAAVL----DNTDP 124

Query: 850 FNAVDLARLS 859
                + ++ 
Sbjct: 125 IMVSKIVKIL 134


>gi|145545301|ref|XP_001458335.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426154|emb|CAK90938.1| unnamed protein product [Paramecium tetraurelia]
          Length = 787

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/94 (9%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---KLQLIHAKRKLQLNVEDLSCH 789
             L  + ++L+ L      S  +++  +E + ++ +    L+    ++  + + +     
Sbjct: 205 DTLAKKLKELEKLQKSFGGSPEDLLKELERLKKKAKDADDLKKELDRQLRENDKQKTDLD 264

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            + D+   +  + ++++++L   ++ ++ K++  
Sbjct: 265 VLDDLRKNAQNL-QMENRQLNQQLNDMKNKLRDA 297


>gi|238505689|ref|XP_002384056.1| hypothetical protein AFLA_101840 [Aspergillus flavus NRRL3357]
 gi|220690170|gb|EED46520.1| hypothetical protein AFLA_101840 [Aspergillus flavus NRRL3357]
          Length = 515

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDA 815
            +V+E+ ++ +KLQ  +AK + ++ +         ++N +   I + +    ++K     
Sbjct: 120 KKVDELGKQVKKLQSDNAKEREKVALAQ------KEINGLQQSIQDKEITIDKMKKAGAD 173

Query: 816 LQKKIQSG 823
           L+ K+ S 
Sbjct: 174 LKDKLASA 181


>gi|188996527|ref|YP_001930778.1| chaperonin GroEL [Sulfurihydrogenibium sp. YO3AOP1]
 gi|226704181|sp|B2V8F1|CH60_SULSY RecName: Full=60 kDa chaperonin; AltName: Full=GroEL protein;
           AltName: Full=Protein Cpn60
 gi|188931594|gb|ACD66224.1| chaperonin GroEL [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 544

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKE 808
           K +  ++  R+E+I ++       + K KLQ  +  L       V  +     +E + KE
Sbjct: 336 KGNPEDIKARIEQIKKQIETTTSEYDKEKLQERLAKL----AGGVAIIKVGAATEAELKE 391

Query: 809 LKSVMDAL----QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
            K  +D      +  ++ GI+   GI+  + +  L  + E+  D+   + + + + KV
Sbjct: 392 KKDRVDDAVHATKAAVEEGIVPGGGIAIFRASRALCNIKEENTDKAWGIKIVKNACKV 449


>gi|110678163|ref|YP_681170.1| hypothetical protein RD1_0806 [Roseobacter denitrificans OCh 114]
 gi|109454279|gb|ABG30484.1| hypothetical protein RD1_0806 [Roseobacter denitrificans OCh 114]
          Length = 683

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L    E+L  ++S L  S    V R+EE   E  KLQ    + K+    + +      
Sbjct: 404 KRLKAITEELDEISSSLGSSDIEDVKRLEERRNELTKLQAE-ERLKIAKAKDAIELLN-D 461

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           D+  +   I +V SK  K   D  ++K++
Sbjct: 462 DLAKVKKEIEKVQSKSQKE--DLARQKLE 488


>gi|47214617|emb|CAG01458.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1158

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--------------LQLIHAKRK 778
             L  ++++ +SL   LKV QG V    E++ EE +K              L     + K
Sbjct: 491 ERLKQEEQRSESLGEMLKVEQGKVTEVTEKLIEESKKLLRFKKEMEDKVAELTKERDELK 550

Query: 779 LQLNVEDLSCHKIA-DVNFMSHIISEV 804
             L  E+  C ++   VN M   +  +
Sbjct: 551 SNLAGEEDKCRQLNVKVNSMKARMDGL 577


>gi|164708125|gb|ABY67185.1| pneumococcal surface protein A [Streptococcus pneumoniae]
          Length = 487

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK  +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 225 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 278

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + EL++ +  L+K+I +  I+L G   E 
Sbjct: 279 KADELQNKVADLEKEISNLEILLGGADPED 308


>gi|149202133|ref|ZP_01879106.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius sp.
           TM1035]
 gi|149144231|gb|EDM32262.1| single-stranded-DNA-specific exonuclease RecJ [Roseovarius sp.
           TM1035]
          Length = 582

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 16/144 (11%)

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
             R++++  E R+++       L             D   +           +  V   L
Sbjct: 327 AERLDQLNTERREVEAQVRDAALAQAEARGL-----DAPLVWAAGEGWHPGVVGIVASRL 381

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA-RLSAKVLGGGGGGGRPHMA 875
           +++     I++     E K S     +   +   +      RL+++ L   GGG +  MA
Sbjct: 382 KERANRPAIVIGLDGDEGKGS---GRS---VSGVDLGAAIQRLASEGLLIKGGGHK--MA 433

Query: 876 QSGGPNG-NKADQAIAGVASFLKK 898
            +G      + + A+A ++  L K
Sbjct: 434 -AGLTVARERLEAAMARLSELLAK 456


>gi|149068176|gb|EDM17728.1| nucleobindin 2, isoform CRA_c [Rattus norvegicus]
          Length = 411

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +E+LK   S + + +  +  + +E+ ++  +LQ  H   + Q      +  ++    F  
Sbjct: 335 EEELKEYESIIAIQENELKKKADELQKQKEELQRQHDHLEAQKQEYQQAVQQLEQKKFQQ 394

Query: 799 HIISEVDSKELK 810
            I     + ELK
Sbjct: 395 GIAPSGPAGELK 406


>gi|126662721|ref|ZP_01733720.1| hypothetical protein FBBAL38_05180 [Flavobacteria bacterium BAL38]
 gi|126626100|gb|EAZ96789.1| hypothetical protein FBBAL38_05180 [Flavobacteria bacterium BAL38]
          Length = 1032

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +       +D       +  K +Q ++    E+I EE + L   +   K  +++ +   
Sbjct: 577 DKLDKLADKEDALSNDEKNNNKANQDSITKDFEKIQEELKDLDKENKDLKAPMDIPNDKN 636

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +  DV            +++K   + LQ + Q   
Sbjct: 637 EQ-EDVK-----------EDMKKAAEDLQNQNQKKA 660


>gi|15054439|gb|AAK77948.1| M protein [Streptococcus pyogenes]
          Length = 240

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 33/91 (36%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L  + ++L      L   + N+  R +E+  +   L+    +             K  + 
Sbjct: 106 LTSEKDRLTEANKTLTSEKENLTNRNQELKADNDDLKAEKNRLTTDNRGLTEKLEKAKEE 165

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      S+ + K L  + + L+K ++  I 
Sbjct: 166 SVNKERESKENEKTLNDLNELLKKTVEDKIA 196


>gi|6841062|gb|AAF28885.1|AF123078_10 BdrA [Borrelia hermsii]
          Length = 187

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 50/95 (52%), Gaps = 9/95 (9%)

Query: 732 RSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
             +L       L+ L + LK    ++  +++ + E    +++ + + +L+ +++DL  +K
Sbjct: 44  IEYLETTFNLKLEKLEASLKSDIRDLDNKIDTV-ENNLNIKIDNVRNELKSDIKDLD-NK 101

Query: 791 IADV-NFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           I +V N +   I ++D+K     +D ++ +++S I
Sbjct: 102 IDNVRNELKSDIKDLDNK-----IDTVRNELKSDI 131


>gi|37780189|gb|AAO46090.1| adhesion factor precursor [Finegoldia magna]
          Length = 616

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           E +K L  F K+S      ++ ++ EE  KL+  +AK             ++  +     
Sbjct: 367 ELIKELEEFSKLSSSEQFAKIAKLQEELAKLKKEYAK-------TSEGIQQVKKLVTYQF 419

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            + + + K ++ +   L     +  +               +V
Sbjct: 420 HVKDTEGKGVQGLTLRLANIDDTSKVYTATSDANGLIQFKSMV 462


>gi|324499828|gb|ADY39936.1| Ubiquitin carboxyl-terminal hydrolase 7 [Ascaris suum]
          Length = 1862

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +R +         +K + + L+  +      V+++ ++  +L+      K      +   
Sbjct: 1208 ERLKKSEQKHANTMKQIQAQLQAEKEKHEKTVQQLNQKKNELKKQEKVLKQHERDAERCR 1267

Query: 789  HKIADVNFMSHIISEV---DSKELKSVMDALQK 818
                 V++++  + E+   ++ E++ +   LQ 
Sbjct: 1268 ELQDKVDYLTKELQEMRQKNADEVRKLQRELQS 1300


>gi|324499806|gb|ADY39927.1| Ubiquitin carboxyl-terminal hydrolase 7 [Ascaris suum]
          Length = 1904

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +R +         +K + + L+  +      V+++ ++  +L+      K      +   
Sbjct: 1250 ERLKKSEQKHANTMKQIQAQLQAEKEKHEKTVQQLNQKKNELKKQEKVLKQHERDAERCR 1309

Query: 789  HKIADVNFMSHIISEV---DSKELKSVMDALQK 818
                 V++++  + E+   ++ E++ +   LQ 
Sbjct: 1310 ELQDKVDYLTKELQEMRQKNADEVRKLQRELQS 1342


>gi|301788025|ref|XP_002929429.1| PREDICTED: GRIP and coiled-coil domain-containing protein 2-like
            [Ailuropoda melanoleuca]
          Length = 1827

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 729  QRARSHLMGQDEKLKSL------ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            +RA +     ++  + L         L     +++ R+E +    + L++   + +    
Sbjct: 1181 ERANNFEHHIEDLTRQLRNSTFQCEKLSSDNEDLLARIETLQSNAKLLEVQILEVQKAKA 1240

Query: 783  VED--LSCHKIADVNFMSHIISEVD 805
            V D  L   K+     +    S V+
Sbjct: 1241 VADKELEAEKLQKEQKIKEHASSVN 1265


>gi|295110189|emb|CBL24142.1| Outer membrane protein and related peptidoglycan-associated
           (lipo)proteins [Ruminococcus obeum A2-162]
          Length = 331

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           + +  +DE L++    LK     +  + +++     KL+   +    Q    D    ++ 
Sbjct: 70  NAIDEKDETLQNQDEQLKTQDEKLAEQQKQLEALAAKLKEQESTLNAQQTALDEKTAQLK 129

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           D       I  V +     V++AL+ +    
Sbjct: 130 DQQVQIDQIIGVKAD----VIEALKNEFSKN 156


>gi|295702956|ref|YP_003596031.1| efflux transporter, RND family, MFP subunit [Bacillus megaterium
           DSM 319]
 gi|294800615|gb|ADF37681.1| efflux transporter, RND family, MFP subunit [Bacillus megaterium
           DSM 319]
          Length = 376

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 67/189 (35%), Gaps = 36/189 (19%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           GE+   ++   S ++ G   +   +          Q++  +  +        +V  ++  
Sbjct: 70  GEVERFHVTEGSRVQQGTSLVTYES--DTLDLEQEQNKLERKSSQL---QIDSVSKQLSN 124

Query: 763 IWEEYRKLQLIHAKRKLQLNVE--------DLSCHKIA------DVNFMSHIISEVD-SK 807
           + ++ ++L+   +K++ +  ++        DL   KI       +   ++     +D + 
Sbjct: 125 LNKKQKELEKEMSKQEAKDQIDTERTQLNLDLETAKIDLERNKLEAKSIAKKERNLDVAS 184

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD----------RFNAVDLAR 857
           ++   +  + K+       +   S  +K  + I  T++ L           +       +
Sbjct: 185 DINGTVLEVDKE------AVNNTSDVQKPLIHIGNTDEYLATGVLSEYDALKIKTGQAVK 238

Query: 858 LSAKVLGGG 866
           +++ VL   
Sbjct: 239 ITSDVLPDK 247


>gi|224091941|ref|XP_002309409.1| predicted protein [Populus trichocarpa]
 gi|222855385|gb|EEE92932.1| predicted protein [Populus trichocarpa]
          Length = 667

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 15/126 (11%)

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL----KVSQGNVVGRVEE 762
           L+   +E       +  E    + A   + G+ +  K L        K     +      
Sbjct: 279 LMKCFAEEKAAWKNK--EQKVVEAAIESIAGELDVEKKLRRRFESLNKKLGKELAETKAS 336

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---------ELKSVM 813
           + +  ++L+     R +   V D     I D       +    +K         E+  + 
Sbjct: 337 LLKAVKELESEKRARVVMQKVCDELARDIGDDKAEVEELKRESAKLCEEVEKEREMMQLA 396

Query: 814 DALQKK 819
           D L+++
Sbjct: 397 DVLREE 402


>gi|254303267|ref|ZP_04970625.1| hypothetical protein FNP_0909 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323459|gb|EDK88709.1| hypothetical protein FNP_0909 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 337

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +      L  +   L +++ +    +E + + Y  ++    K    L  +  S  KI + 
Sbjct: 130 IKESKTTLNYVKQNLNITEKDAKEFIELLGDNYYHIKNETNKVATFLEGQPYSFEKIKN- 188

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +  I  E + K+L  + + L+ K  S II  +  +K+    ++ ++T++L++      
Sbjct: 189 --LISIDKEYNMKDL--IENFLKAKNFSDIINFLEKNKDSYLGLIYMLTDELINLLKLAS 244

Query: 855 LAR 857
           L +
Sbjct: 245 LIK 247


>gi|145492722|ref|XP_001432358.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399469|emb|CAK64961.1| unnamed protein product [Paramecium tetraurelia]
          Length = 345

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 49/194 (25%), Gaps = 22/194 (11%)

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
            P + +   SI     +            M                K  +   V S+E+ 
Sbjct: 10  SPESQSVRNSIRHQSLNQSVHEFSGYKEKMQDLMLPNVEFVDPQNFKKQNECIVCSIEFT 69

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD----- 739
                        H               S       R+  I   +A      +      
Sbjct: 70  QTNRQ--------HHCR--MCGNSCCGVCSQKTINKNRVCDICYMKASQITAEKKRTKFL 119

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS------CHKIAD 793
           + LK  A  L+        + +E+ EE R  Q   ++  L++  ++          K  D
Sbjct: 120 QTLKESAKKLRKHIEQAEKKKQELQEE-RDAQKDKSQIDLKVIEKETEDYRLKYSQKTQD 178

Query: 794 VNFMSHIISEVDSK 807
                  + E+  K
Sbjct: 179 KCLYEQEVEEIKMK 192


>gi|735904|gb|AAA64514.1| testicular protein [Mus musculus]
          Length = 1029

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             Q + L+S  + LK    N    +EE+ +E + L+   +    QLN  ++   K+ 
Sbjct: 645 EKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLE 701


>gi|28211782|ref|NP_782726.1| carbon dioxide concentrating mechanism protein [Clostridium tetani
           E88]
 gi|28204224|gb|AAO36663.1| ethanolamine utilization protein eutM [Clostridium tetani E88]
          Length = 177

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 14/120 (11%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG++  +    E++  A    IE I   R    +    +++  +    K    N+  +VE
Sbjct: 48  TGDVASVKASIEAACVA----IERIGTLRNAHVISRAYDEVWKIFQK-KTVIDNIDSKVE 102

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           E+ +  + L+  +    L++   +    +          +  +  +EL+++  AL+++ +
Sbjct: 103 EVKQVKKDLEKENLDNSLEVEKNESISEE---------ELKSLKVQELRTMARALKEQHK 153


>gi|310823613|ref|YP_003955971.1| hypothetical protein STAUR_6387 [Stigmatella aurantiaca DW4/3-1]
 gi|309396685|gb|ADO74144.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 251

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           A+   +   ++L  L   L  ++  V G+  E     ++L    ++ + +L   +    +
Sbjct: 109 AKKANLTMADELVELTKTLGAARETVKGKEVEFATRQQQLGARMSELRSKLAESETQVKQ 168

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           +      S +   VD   L+      +KK+ + + ++ G 
Sbjct: 169 LEGQR--SSVAEHVDPNLLRRYETIRKKKLPALVGVVAGT 206


>gi|196002279|ref|XP_002111007.1| hypothetical protein TRIADDRAFT_54509 [Trichoplax adhaerens]
 gi|190586958|gb|EDV27011.1| hypothetical protein TRIADDRAFT_54509 [Trichoplax adhaerens]
          Length = 234

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 71/209 (33%), Gaps = 30/209 (14%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG---IFVHHA----I 559
             ++  +V D T  + + GGQ  D G     G  +       +      +F+ H      
Sbjct: 30  DEEEYIIVVDNTVMHPQGGGQPADVGLIKNQGEDVVFHVHHVQKPSKEALFIEHVGKYSQ 89

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +++ ID   RR  +  HSA HLL  AL  +  + +  +     PD    
Sbjct: 90  SSIRRFDVGDPVIMQIDEAKRRLHARLHSAGHLLDGALQNLGITELVGSKGYHFPDNPYV 149

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           +   + P+   E       V  +  +   ++ + +  E +   G             R V
Sbjct: 150 EYIGNIPVEKREE-----IVKLLNEETTKLIAKNLPVEVSHQEGL------------RYV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           ++            CGGTHV S  EI  +
Sbjct: 193 NIAG------VKCPCGGTHVKSLKEIGKV 215


>gi|182625257|ref|ZP_02953032.1| exonuclease SbcC [Clostridium perfringens D str. JGS1721]
 gi|177909569|gb|EDT72009.1| exonuclease SbcC [Clostridium perfringens D str. JGS1721]
          Length = 1172

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  +   LK       + + N+   +E++ EE   L+ I  K      VE + C KI
Sbjct: 651 LKSLEEEFNTLKEKVEEFNLKKENLEKDLEKLKEEKNNLENIFNK------VEVILCEKI 704

Query: 792 ADVNFMSHIISEVDSKELK---SVMDALQKKIQ 821
                ++  I E+D KELK   S +++++ +++
Sbjct: 705 VREKEIASKIKELD-KELKLKNSELNSIKNELK 736


>gi|149068175|gb|EDM17727.1| nucleobindin 2, isoform CRA_b [Rattus norvegicus]
          Length = 420

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +E+LK   S + + +  +  + +E+ ++  +LQ  H   + Q      +  ++    F  
Sbjct: 344 EEELKEYESIIAIQENELKKKADELQKQKEELQRQHDHLEAQKQEYQQAVQQLEQKKFQQ 403

Query: 799 HIISEVDSKELK 810
            I     + ELK
Sbjct: 404 GIAPSGPAGELK 415


>gi|123364755|ref|XP_001296249.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121875725|gb|EAX83319.1| hypothetical protein TVAG_313170 [Trichomonas vaginalis G3]
          Length = 298

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 735 LMGQDEKLKSLASFLKV------SQGNVVGRVEEIWEEYRKLQLIHAKRK--LQLNVEDL 786
           L    EK+K L   LK       +  +   +++++ +E +  Q          ++ ++  
Sbjct: 44  LNDSKEKIKKLQDELKAYQTQTQNLNDSKEKIKKLQDELKAYQTQIQNLNHSKEILIKIS 103

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVM 813
              K  +       + E+ ++  + +M
Sbjct: 104 EIKKSNNFESAYKFLDELSAEGNQEMM 130


>gi|115373764|ref|ZP_01461058.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115369311|gb|EAU68252.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 227

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           A+   +   ++L  L   L  ++  V G+  E     ++L    ++ + +L   +    +
Sbjct: 85  AKKANLTMADELVELTKTLGAARETVKGKEVEFATRQQQLGARMSELRSKLAESETQVKQ 144

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           +      S +   VD   L+      +KK+ + + ++ G 
Sbjct: 145 LEGQR--SSVAEHVDPNLLRRYETIRKKKLPALVGVVAGT 182


>gi|58698608|ref|ZP_00373505.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630099|ref|YP_002726890.1| hypothetical protein WRi_002780 [Wolbachia sp. wRi]
 gi|58534878|gb|EAL58980.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592080|gb|ACN95099.1| hypothetical protein WRi_002780 [Wolbachia sp. wRi]
          Length = 467

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVE-------EIWEEYRKLQLIHAKRKLQLNVEDLS 787
           L  + E L+ +   L+  +  +  +VE       ++ +E ++L+    K  + L+     
Sbjct: 211 LNDRIETLREVQKALREKKHELSEKVEVLNKEKNKLSKEVKELREEQEKLYISLDKLQCK 270

Query: 788 CHKIADVN 795
             ++    
Sbjct: 271 IKEVNKEK 278


>gi|226487414|emb|CAX74577.1| quinolinate phosphoribosyltransferase [Schistosoma japonicum]
          Length = 315

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDL 855
           +S    ++D+  LKS +D ++ ++ S  + +     ++ A +      D LL   +A ++
Sbjct: 161 VSVRCKDMDAGSLKSAIDEVRSRVGSIPVHVACCRLDE-ACLAAGAGADILLTGLSAKEI 219

Query: 856 ARLSAKV 862
             ++++V
Sbjct: 220 VDIASQV 226


>gi|226487412|emb|CAX74576.1| quinolinate phosphoribosyltransferase [Schistosoma japonicum]
          Length = 303

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDL 855
           +S    ++D+  LKS +D ++ ++ S  + +     ++ A +      D LL   +A ++
Sbjct: 161 VSVRCKDMDAGSLKSAIDEVRSRVGSIPVHVACCRLDE-ACLAAGAGADILLTGLSAKEI 219

Query: 856 ARLSAKV 862
             ++++V
Sbjct: 220 VDIASQV 226


>gi|226469360|emb|CAX70159.1| quinolinate phosphoribosyltransferase [Schistosoma japonicum]
          Length = 305

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDL 855
           +S    ++D+  LKS +D ++ ++ S  + +     ++ A +      D LL   +A ++
Sbjct: 161 VSVRCKDMDAGSLKSAIDEVRSRVGSIPVHVACCRLDE-ACLAAGAGADILLTGLSAKEI 219

Query: 856 ARLSAKV 862
             ++++V
Sbjct: 220 VDIASQV 226


>gi|145479721|ref|XP_001425883.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392955|emb|CAK58485.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1068

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-VEDLSCHKI 791
             L     +L+ + + LK    ++  +++++ +E +       + K Q+  +E L  ++ 
Sbjct: 854 QELNDLHNQLEDI-NELKTQLSSLENQLQQLTDENQNKSAEITQLKQQIAEIEGLLVNQE 912

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKI 820
              N +  +  E  SK+   +++  ++KI
Sbjct: 913 DLQNQIKKLEKESQSKD--EIIEQFKQKI 939


>gi|45185840|ref|NP_983556.1| ACR154Wp [Ashbya gossypii ATCC 10895]
 gi|44981630|gb|AAS51380.1| ACR154Wp [Ashbya gossypii ATCC 10895]
          Length = 451

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 25/136 (18%)

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK-------SLASFL 749
            HV     +  L      +IR      E          L  Q EK         S  + L
Sbjct: 134 CHVCCELMMQRLKAEYADAIRKRDAYFEF------MDRLQKQHEKESAQEPKPASAEADL 187

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---- 805
              +  +V ++  +  E  KL       + QL  ++    +      +   + +++    
Sbjct: 188 LAQKDELVTKLVALEHENDKLDKEIESLEQQLREKEQQETRA----VLKQNLKDLEHIAF 243

Query: 806 SKELKSVMDALQKKIQ 821
            K+++S    L+ + +
Sbjct: 244 MKDMQS----LKNQYE 255


>gi|312218534|emb|CBX98480.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1141

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 51/123 (41%), Gaps = 18/123 (14%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE----YRKLQLIHAKRKLQLNVEDLS 787
                  + +L+ +++ L+ +Q  V  R + + +E      +L+     +  +    +  
Sbjct: 279 VEEARNAEAELEKVSAELEEAQAEVSKR-DRLLDEHDDRIEELEKELEAQSSRSAGLEEK 337

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             +IAD    +  I+E+D+ +L+S+  A +  +     +L    +  K        +DL 
Sbjct: 338 EREIAD---QAERIAELDA-QLQSLRQAQRNDLADKERLLA--EQNDKI-------KDLE 384

Query: 848 DRF 850
           D+ 
Sbjct: 385 DQL 387


>gi|170755091|ref|YP_001782827.1| von Willebrand factor type A domain-containing protein [Clostridium
           botulinum B1 str. Okra]
 gi|169120303|gb|ACA44139.1| von Willebrand factor type A domain protein [Clostridium botulinum
           B1 str. Okra]
          Length = 578

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVG-----RVEEIWEEYRKLQLIHAKRKLQLNVE-D 785
              L  + ++L+     LK +  ++       ++E+I EE   L+      + +L+ + +
Sbjct: 199 IKDLSQEKQELEENIENLKNNTSDLSEEDMKNKIEQIDEELENLEKQADNLEEELSDKLE 258

Query: 786 LSCHKIADV-NFMSHIISEVDSKELKSVMDALQK 818
            S   I ++   M+   +E + KE++     ++ 
Sbjct: 259 KSEEDIENLSKEMAEAFNEAE-KEVREATSYVKD 291


>gi|168217580|ref|ZP_02643205.1| exonuclease SbcC [Clostridium perfringens NCTC 8239]
 gi|182380391|gb|EDT77870.1| exonuclease SbcC [Clostridium perfringens NCTC 8239]
          Length = 1172

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  +   LK       + + N+   +E++ EE   L+ I  K       E + C KI
Sbjct: 651 LKSLEEEFNTLKEKVDEFNLKKENLEKDLEKLKEEKNNLENIFNK------AEVILCEKI 704

Query: 792 ADVNFMSHIISEVDSKELKSVMDAL---QKKIQ 821
                ++  + E+D KELK  +  L   + +++
Sbjct: 705 VREKEIASKVKELD-KELKLKISELNFIKNELK 736


>gi|168180053|ref|ZP_02614717.1| putative ABC transporter, permease protein [Clostridium botulinum
           NCTC 2916]
 gi|182668953|gb|EDT80929.1| putative ABC transporter, permease protein [Clostridium botulinum
           NCTC 2916]
          Length = 391

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 46/115 (40%), Gaps = 15/115 (13%)

Query: 760 VEEIWEEYRKLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
           +++  +  +  +    +       +  +  +     KI +         EV SK LK ++
Sbjct: 77  LKKFIDIKKNKEKAIEEVIIPKGYEKSIIEDKEIAIKINE----REKDKEVSSKILKDII 132

Query: 814 DALQKKIQSGIIMLVGISK-----EKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           D   K++++ +++   I+      EKK  ++  +++D+   +    +     K +
Sbjct: 133 DNYSKELKNNLVIGNNINNMDISKEKKDLLVKEISKDITKIYKKDAIRNSIVKSI 187


>gi|119498053|ref|XP_001265784.1| nuclear condensin complex subunit Smc4, putative [Neosartorya
            fischeri NRRL 181]
 gi|119413948|gb|EAW23887.1| nuclear condensin complex subunit Smc4, putative [Neosartorya
            fischeri NRRL 181]
          Length = 1440

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            + A   L     ++K L+   K S+ +   + E++  +   L+      + Q +  +   
Sbjct: 978  ESANRSLADAQRRVKELSVAHKPSKAD-ANQAEQLEAQIAALEEEIEDLRAQKSGIEEEI 1036

Query: 789  H----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
                 KI +V  +     +     LK  +  L ++I +  I   G SK +K
Sbjct: 1037 QTLQNKIMEVGGVRLRSQKAKVDGLKEQISLLAEEISNAEI---GKSKNEK 1084


>gi|67466533|ref|XP_649414.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56465850|gb|EAL44026.1| hypothetical protein EHI_160890 [Entamoeba histolytica HM-1:IMSS]
          Length = 499

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            R E I +  +K + +  +R+ + +V      K A+            +K L+     L+
Sbjct: 16  KRNERIDDRRKKREQLMEQRRKEESVLMSQQQKAAEEKIQQER-----NKFLREKYRELE 70

Query: 818 KKIQSGIIMLVGISKEKK-ASVLIVV-TEDLLDR 849
           ++I   II+L     E K  ++++++ +E L ++
Sbjct: 71  ERIHQEIIVLSNTPNEDKMYNLVVMIASESLKNK 104


>gi|325836779|ref|ZP_08166246.1| peptidase, M23 family [Turicibacter sp. HGF1]
 gi|325491157|gb|EGC93446.1| peptidase, M23 family [Turicibacter sp. HGF1]
          Length = 385

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A   L     + ++L S LKV +  +      + +E   L+    K + Q         
Sbjct: 163 EAMDQLKSLVSEQQNLLSSLKVQKEELAASKASLEQERSNLEAYEEKLQSQKAAIAKQIQ 222

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           ++         I  + ++E K++   L  +   G I+
Sbjct: 223 ELESERLSQAEIIAI-AEEQKNL---LVSQTSGGFII 255


>gi|261868585|ref|YP_003256507.1| recombination associated protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413917|gb|ACX83288.1| recombination associated protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 301

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 17/160 (10%)

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D    + +     H               S    G   +    G++       +++ L  
Sbjct: 17  DWSEQTLSAALANHQYHPCHQSEQSKFGWSQPLKGSELLYFTVGKQILLLAQKEEKILP- 75

Query: 745 LASFLKVSQGNVVGRVEEI-WEEYRKLQLIHAKRKLQLNVEDLSCHK----------IAD 793
            +  +K     +  R+E++   E RKL+ +  +      V  L              I  
Sbjct: 76  -SHVVK---RELDARIEKLEQAENRKLKKVEKQTLKDDVVATLLPRAFSKYQQTTIWIDA 131

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            N + + ++   +K  + V+  L+K + S  ++ +  + E
Sbjct: 132 ENHLIY-VNAASAKRAEEVLALLRKSLGSLPVVPLAFTNE 170


>gi|159030629|emb|CAO88297.1| thrS [Microcystis aeruginosa PCC 7806]
          Length = 599

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H++  A+  +        G   T  G  +D    +P T  +LK I+  +  II + 
Sbjct: 23  HTTSHVMAMAVQKLFPQAQVTIGPW-TETGFYYDFDVPEPFTDKDLKDIKKEMVKIINKK 81

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVSSTG 703
           LPV  R     +         +   Y   +       +     G     LC G H+ +T 
Sbjct: 82  LPV-IREQVSREEAEK-RIKAINEPYKLEILAGIQEPITLYHLGDAWWDLCAGPHLDNTS 139

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           E+     +   ++     R     G   ++ L                +   +      +
Sbjct: 140 ELDP-KAIELETVAGAYWR-----GDENKAQLQRIYGTAWE-------NPQQLAEYKRRK 186

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++RKL    
Sbjct: 187 EEALKRDHRKLGKEL 201


>gi|149194939|ref|ZP_01872032.1| seryl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149134860|gb|EDM23343.1| seryl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 415

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 43/100 (43%), Gaps = 15/100 (15%)

Query: 734 HLMGQDEKLKSLASFLKVS--QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK- 790
            L   ++  ++++  L +     N++  ++ ++++ ++L     + K + N       K 
Sbjct: 3   DLKQLEKDFENISKKLSLKGIDENILKDIKNLFQQKKELLHKIEELKAKRNTLSKEIGKN 62

Query: 791 -----------IADVNFMSHIISEVDSKELKSVMDALQKK 819
                        +V+ +   IS +++K LK + D L KK
Sbjct: 63  IKTNPQKAEELKKEVSNIKEEISNLENK-LKEIEDNLNKK 101


>gi|15900059|ref|NP_344663.1| pneumococcal surface protein A [Streptococcus pneumoniae TIGR4]
 gi|14971584|gb|AAK74303.1| pneumococcal surface protein A [Streptococcus pneumoniae TIGR4]
          Length = 744

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK  +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 247 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 300

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + EL++ +  L+K+I +  I+L G   E 
Sbjct: 301 KADELQNKVADLEKEISNLEILLGGADPED 330


>gi|241982716|ref|NP_038635.2| myosin-11 isoform 1 [Mus musculus]
          Length = 1938

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 720  IRRIEAITGQRARSHLMGQDEKLKS--------LASFLKVSQGNVVGRVEEIWEEYRKLQ 771
              R  A   + AR  L  Q+++L+S        + + LK +   +  ++ ++ E     Q
Sbjct: 1775 TERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKIAQLEE-----Q 1829

Query: 772  LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +    R+ Q   + L          +  +  E      + + +  +++ + G
Sbjct: 1830 VEQEAREKQAATKSLKQKDKKLKEVLLQVEDE------RKMAEQYKEQAEKG 1875


>gi|239637036|ref|ZP_04678030.1| exonuclease SbcC [Staphylococcus warneri L37603]
 gi|239597386|gb|EEQ79889.1| exonuclease SbcC [Staphylococcus warneri L37603]
          Length = 1009

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 22/231 (9%)

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           +   G         F +   +        S E         N      I  R +      
Sbjct: 135 IDLIGVNAEQFRQLFILPQGEFKKFLLSNSKEKQGILRTLFNSERFEEIEKRLNENVKNE 194

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              +  +Y +  R+ +  +         L    +V  T +I  +                
Sbjct: 195 KIQIEERYKNIERLWNDIHTFENNDLEELKS-INVHQTDKINEVLHRFNEFGEK------ 247

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ---L 781
              G++        + +++ +   L  ++      +E    E +K +    + K     +
Sbjct: 248 --IGRKKYEQKKSHENEIEKVEQKLNDNKE-----LESNLNELKKNENELKQLKQNESFI 300

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           N      +KI ++  +S ++   ++         L++  +S  I +  I+ 
Sbjct: 301 NQHRAKLNKINEIKPLSQLLDRNEAAN-----KKLKQAEKSIEIAVHSINN 346


>gi|154414023|ref|XP_001580040.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121914253|gb|EAY19054.1| hypothetical protein TVAG_247330 [Trichomonas vaginalis G3]
          Length = 884

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            +  G   I  +T   + +    ++EKLKS  + LK        RV ++  +   L+  +
Sbjct: 421 QLADGNSEITRLT--ASLNQANSENEKLKSELTSLKEQNAKYDERVIKMTSQILNLEENN 478

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVD-SKEL---KSVMDALQKKIQS 822
             + + L   D    + AD+      ++ V  + +L   + ++  L  K + 
Sbjct: 479 KVQSVNLQEADERAKEKADIEVRKANMALVSLNNDLVKEQKIVFDLTNKNEE 530


>gi|110639865|ref|YP_680075.1| hypothetical protein CHU_3499 [Cytophaga hutchinsonii ATCC 33406]
 gi|110282546|gb|ABG60732.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 1082

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 21/101 (20%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQ----------GNVVGRVEEIWEEYRKLQLIHAKRK 778
           Q          ++++ L   LK  +            +V + + + +E  KLQ    K +
Sbjct: 494 QEVAEQAKQLQKEMQQLEERLKSKKQLSWQDKKAMEEMVKKNQALEKELEKLQENLKKLQ 553

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + +  D +  ++A+             K+L+ +M+ L  +
Sbjct: 554 EKQDKFDPASQELAEK-----------MKQLEKLMNQLLDE 583


>gi|50510675|dbj|BAD32323.1| mKIAA0866 protein [Mus musculus]
          Length = 1984

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 720  IRRIEAITGQRARSHLMGQDEKLKS--------LASFLKVSQGNVVGRVEEIWEEYRKLQ 771
              R  A   + AR  L  Q+++L+S        + + LK +   +  ++ ++ E     Q
Sbjct: 1787 TERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKIAQLEE-----Q 1841

Query: 772  LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +    R+ Q   + L          +  +  E      + + +  +++ + G
Sbjct: 1842 VEQEAREKQAATKSLKQKDKKLKEVLLQVEDE------RKMAEQYKEQAEKG 1887


>gi|71020659|ref|XP_760560.1| hypothetical protein UM04413.1 [Ustilago maydis 521]
 gi|46100448|gb|EAK85681.1| hypothetical protein UM04413.1 [Ustilago maydis 521]
          Length = 1371

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 730  RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
             A+  +     +L++  + ++  + +    + ++   + +LQ +  + + +    +    
Sbjct: 925  AAQEAVTTHAPQLEAARTQVEQLRSDHASALADLQARHDELQKLLTEAQTREEESNGKVL 984

Query: 790  KIAD--VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT-EDL 846
            ++        +   S+ +   L+   D L+KK    ++     S + K      V  +DL
Sbjct: 985  QLTSEMARISASKPSQKEFAALQKAHDELKKKHDDLVV---AGSFDGKKEGAGGVAMKDL 1041

Query: 847  LDRFNAVDLARLSAKVLG 864
                 A +LA   A  + 
Sbjct: 1042 ---IQARELAGQQADKIA 1056


>gi|323691734|ref|ZP_08105994.1| peptidase M23B [Clostridium symbiosum WAL-14673]
 gi|323504212|gb|EGB20014.1| peptidase M23B [Clostridium symbiosum WAL-14673]
          Length = 401

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           +  +  +LK + S +      V            ++++I  E ++ +   A++K +   +
Sbjct: 204 VNEKSAELKKVNSQIGTKTAQVEAYEKDIKAQEDKIKQIEAEIKRQE-EEARKKAEAAGQ 262

Query: 785 DLSCHKIADVNFM 797
             +   I ++ F+
Sbjct: 263 KYNTVNIGNIKFI 275


>gi|304440756|ref|ZP_07400635.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370764|gb|EFM24391.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 260

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +KI
Sbjct: 21  IKDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGEKLKQEKAKLEEEIRDKD---NKI 77

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 78  AQLNKEIEDLKNSNNDELIAEITQLKDELK 107


>gi|242400029|ref|YP_002995454.1| hypothetical protein TSIB_2058 [Thermococcus sibiricus MM 739]
 gi|242266423|gb|ACS91105.1| hypothetical protein TSIB_2058 [Thermococcus sibiricus MM 739]
          Length = 273

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVG 758
               +I+  +  ++   R G RR    T Q A       D+ L+ +    +     ++  
Sbjct: 140 EEIRDILWEFYETQMKDRKGFRR--FSTSQMAF-----WDKVLERITEIFRDKRIKSLEE 192

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           RV+ + EE ++L+    K +++         K
Sbjct: 193 RVKALEEENKELREKIRKLEMEKTAYKTLNEK 224


>gi|260798831|ref|XP_002594403.1| hypothetical protein BRAFLDRAFT_166437 [Branchiostoma floridae]
 gi|229279637|gb|EEN50414.1| hypothetical protein BRAFLDRAFT_166437 [Branchiostoma floridae]
          Length = 461

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           L  ++++ + +   L+     V      V ++  E +KL+ ++A+    L  E+     +
Sbjct: 68  LSKREKEKQEVEDKLRAMTEEVAVNDELVGKLGREKKKLEELNAQTLDDLQSEEDKTQNL 127

Query: 792 ADVNF-MSHIISEVD-----SKELKSVMDALQKKIQSGI 824
             +   +   + +++      K++++ +D +++K+++ +
Sbjct: 128 TKLKVKLEQTLDDLEDNLEHDKKIRADVDRVKRKLENDL 166


>gi|148675662|gb|EDL07609.1| synaptonemal complex protein 1 [Mus musculus]
          Length = 968

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             Q + L+S  + LK    N    +EE+ +E + L+   +    QLN  ++   K+ 
Sbjct: 584 EKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLE 640


>gi|88602463|ref|YP_502641.1| hypothetical protein Mhun_1174 [Methanospirillum hungatei JF-1]
 gi|88187925|gb|ABD40922.1| hypothetical protein Mhun_1174 [Methanospirillum hungatei JF-1]
          Length = 682

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCH 789
            S +  ++ +++ L   +K  +     ++E+     ++L  QL   K   +    DL   
Sbjct: 104 LSSIQEKEAQIQILTDLVKEHENTASQKIEDFSARIKQLTDQLESQKVLFEKEKSDLRSE 163

Query: 790 KIADVNFMSHIISEVDSK--ELKSVMDALQKKI 820
                  ++    EV  K  EL+++   L+ +I
Sbjct: 164 YEE---ILAKTRDEVVRKEHELRTLASDLKNRI 193


>gi|1945080|dbj|BAA19691.1| myosin [Mus musculus]
          Length = 1938

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 720  IRRIEAITGQRARSHLMGQDEKLKS--------LASFLKVSQGNVVGRVEEIWEEYRKLQ 771
              R  A   + AR  L  Q+++L+S        + + LK +   +  ++ ++ E     Q
Sbjct: 1775 TERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKIAQLEE-----Q 1829

Query: 772  LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +    R+ Q   + L          +  +  E      + + +  +++ + G
Sbjct: 1830 VEQEAREKQAATKSLKQKDKKLKEVLLQVEDE------RKMAEQYKEQAEKG 1875


>gi|242373141|ref|ZP_04818715.1| S14 family endopeptidase ClpB [Staphylococcus epidermidis
           M23864:W1]
 gi|242349092|gb|EES40693.1| S14 family endopeptidase ClpB [Staphylococcus epidermidis
           M23864:W1]
          Length = 873

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             ++    L  +    K   + L+        ++ ++ +  ++ +L  +++ L+    + 
Sbjct: 438 ASKQRLQELQEELSNEKEKQASLQSRVEQEKEKIGKLQQ--KRAELDESRKALEDAQTNN 495

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  K A++ +    I +++ KEL+ + D  Q +    
Sbjct: 496 NLEKAAELQY--GKIPQLE-KELRELEDVFQDETGED 529


>gi|237756517|ref|ZP_04585046.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691317|gb|EEP60396.1| conserved hypothetical protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 145

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  + EKLK +   +K +       +E+I +E + L+L+  + +          +K 
Sbjct: 18  VEELKKEAEKLKQIRDEIKATYQKNEALLEQIKKEKQALELLKKEIEESKKKIQDERYKK 77

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR 849
                ++ +  ++D      +      K++S      ++    EKKA+ ++    D  D 
Sbjct: 78  -----LAKVFEKMDP----EMAGQKLSKMESAEDAAYIIYNMNEKKAAAVL----DNTDP 124

Query: 850 FNAVDLARLS 859
                + ++ 
Sbjct: 125 IMVSKIVKIL 134


>gi|167626395|ref|YP_001676895.1| seryl-tRNA synthetase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|189083569|sp|B0TYM9|SYS_FRAP2 RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA
           ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec)
           synthetase
 gi|167596396|gb|ABZ86394.1| Serine--tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 426

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
             + ++  R +E+  +   +     KRK +         K+ D+N    +I     K LK
Sbjct: 35  AKRKDLQERTQELQSQRNTISKEIGKRKSKGEDASDIFAKVNDINDELKVIE----KVLK 90

Query: 811 SVMDALQKKI 820
            + D +   +
Sbjct: 91  DLQDCINNTL 100


>gi|170584518|ref|XP_001897046.1| hypothetical protein Bm1_27975 [Brugia malayi]
 gi|158595581|gb|EDP34124.1| hypothetical protein Bm1_27975 [Brugia malayi]
          Length = 1025

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 14/119 (11%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           E+  L  V+E +          +  Q        +   L++++  ++  +   V  + ++
Sbjct: 167 EMEKLKEVAEENESK------FVECQHQLRIAEQKLALLENISIDVEADKVPDVEILRKL 220

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +E   +Q   ++ K +L +     ++          + E D+K LK +  A Q+K   
Sbjct: 221 QDENTAMQAKISELKFELEIGKALSNE-------KQALLEADNKGLKELA-AWQEKNGK 271


>gi|153940746|ref|YP_001392539.1| von Willebrand factor type A domain-containing protein [Clostridium
           botulinum F str. Langeland]
 gi|152936642|gb|ABS42140.1| von Willebrand factor type A domain protein [Clostridium botulinum
           F str. Langeland]
 gi|295320525|gb|ADG00903.1| von Willebrand factor type A domain protein [Clostridium botulinum
           F str. 230613]
          Length = 578

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVG-----RVEEIWEEYRKLQLIHAKRKLQLNVE-D 785
              L  + ++L+     LK +  ++       ++E+I EE   L+      + +L+ + +
Sbjct: 199 IKDLSQEKQELEENIENLKNNTSDLSEEDMKNKIEQIDEELENLEKQADNLEEELSDKLE 258

Query: 786 LSCHKIADV-NFMSHIISEVDSKELKSVMDALQK 818
            S   I ++   M+   +E + KE++     ++ 
Sbjct: 259 KSEEDIENLSKEMAEAFNEAE-KEVREATSYVKD 291


>gi|322807502|emb|CBZ05077.1| inner membrane protein [Clostridium botulinum H04402 065]
          Length = 578

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVG-----RVEEIWEEYRKLQLIHAKRKLQLNVE-D 785
              L  + ++L+     LK +  ++       ++E+I EE   L+      + +L+ + +
Sbjct: 199 IKDLSQEKQELEENIENLKNNTSDLSEEDMKNKIEQIDEELENLEKQADNLEEELSDKLE 258

Query: 786 LSCHKIADV-NFMSHIISEVDSKELKSVMDALQK 818
            S   I ++   M+   +E + KE++     ++ 
Sbjct: 259 KSEEDIENLSKEMAEAFNEAE-KEVREATSYVKD 291


>gi|241982718|ref|NP_001155247.1| myosin-11 isoform 2 [Mus musculus]
          Length = 1972

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 720  IRRIEAITGQRARSHLMGQDEKLKS--------LASFLKVSQGNVVGRVEEIWEEYRKLQ 771
              R  A   + AR  L  Q+++L+S        + + LK +   +  ++ ++ E     Q
Sbjct: 1775 TERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKIAQLEE-----Q 1829

Query: 772  LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +    R+ Q   + L          +  +  E      + + +  +++ + G
Sbjct: 1830 VEQEAREKQAATKSLKQKDKKLKEVLLQVEDE------RKMAEQYKEQAEKG 1875


>gi|254166966|ref|ZP_04873819.1| V-type ATPase 116kDa subunit family [Aciduliprofundum boonei T469]
 gi|197623822|gb|EDY36384.1| V-type ATPase 116kDa subunit family [Aciduliprofundum boonei T469]
          Length = 712

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 14/120 (11%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
            G++E +K     L     ++  R+ +++ ++ ++     + K+Q    +       D++
Sbjct: 95  RGREEIMKDAERTL----ESLEPRILDLYSKWEEINTEIERIKIQRRQVEKLKALPFDIS 150

Query: 796 FM----SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK--ASVLIVVTEDLLDR 849
           ++       I+   +K L    D L+K    G I L  +++ KK   + +IVV   + D+
Sbjct: 151 YLGEGPYAYIAAGTAKNL----DHLKKLESEGKIALWSVAEGKKKEVNYIIVVASHMKDK 206


>gi|193216637|ref|YP_001999879.1| massive surface protein MspL [Mycoplasma arthritidis 158L3-1]
 gi|193001960|gb|ACF07175.1| massive surface protein MspL [Mycoplasma arthritidis 158L3-1]
          Length = 1223

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 11/101 (10%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           I  IT     +        +K L + LK     +  ++  I E+  KL    + +K QL 
Sbjct: 587 IVNITKFDIDNEFKELFSDVKKLETELKTINEEIDEKLTSIQEKIAKLIEGLSHQKAQLE 646

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
                     +  F    I++ D   LK  +D L+K++   
Sbjct: 647 ---------KNTKF--ENIADDDVDALKLAIDTLEKELDKA 676


>gi|156032832|ref|XP_001585253.1| hypothetical protein SS1G_13822 [Sclerotinia sclerotiorum 1980]
 gi|154699224|gb|EDN98962.1| hypothetical protein SS1G_13822 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1428

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 6/74 (8%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
              ++  +++++ +  ++ +      +L++        ++           E+D++ +++
Sbjct: 835 KIEDIEQKIDDLKDTKKQARKEKVALELEIKEVKKQSKELN------QQRKEIDTR-MRA 887

Query: 812 VMDALQKKIQSGII 825
           +    + K   G I
Sbjct: 888 ICIDGRNKYSKGAI 901


>gi|148239112|ref|YP_001224499.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166225511|sp|A5GJT7|SYT_SYNPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147847651|emb|CAK23202.1| Threonyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 610

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 15/195 (7%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL    +N + L I HS +H++  A+  +  +     G   T  G  +D  + +P T A
Sbjct: 23  VVLPKTSENEQLLRIRHSMSHVMAMAVQQLFPNARVTIGPW-TESGFYYDFDNPEPFTEA 81

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGG 687
           +LK+I+  +  II + LP+    ++R +A            Y   +       +     G
Sbjct: 82  DLKAIKKGMIKIINKKLPLERVEVSRSEAEEK--IKAQNEPYKLEILEGLQEPITLYTLG 139

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                LC G HV +TG++         S+     R     G   ++ L          A 
Sbjct: 140 EDWWDLCAGPHVENTGQLN-AKAFELESVAGAYWR-----GDETKAQLQRIYGTAWETAE 193

Query: 748 FL---KVSQGNVVGR 759
            L   K  +   + R
Sbjct: 194 QLAEHKRRKEEALRR 208


>gi|145544350|ref|XP_001457860.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425678|emb|CAK90463.1| unnamed protein product [Paramecium tetraurelia]
          Length = 280

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 31/85 (36%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           +G         Q  +L  L   LK+   +   ++ E  +  +KLQ+       ++N   L
Sbjct: 103 SGNDELRETQKQYRELSELVISLKLQNEDKEQQIIEQNKLNKKLQVELNLLTSKINNLSL 162

Query: 787 SCHKIADVNFMSHIISEVDSKELKS 811
           +  +  +        S+ + K L  
Sbjct: 163 ALVQSKEEKIQYMEQSQKEIKLLME 187


>gi|20070691|gb|AAH26142.1| Myh11 protein [Mus musculus]
          Length = 1972

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 720  IRRIEAITGQRARSHLMGQDEKLKS--------LASFLKVSQGNVVGRVEEIWEEYRKLQ 771
              R  A   + AR  L  Q+++L+S        + + LK +   +  ++ ++ E     Q
Sbjct: 1775 TERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKIAQLEE-----Q 1829

Query: 772  LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +    R+ Q   + L          +  +  E      + + +  +++ + G
Sbjct: 1830 VEQEAREKQAATKSLKQKDKKLKEVLLQVEDE------RKMAEQYKEQAEKG 1875


>gi|13431676|sp|O08638|MYH11_MOUSE RecName: Full=Myosin-11; AltName: Full=Myosin heavy chain 11;
            AltName: Full=Myosin heavy chain, smooth muscle isoform;
            AltName: Full=SMMHC
 gi|1945078|dbj|BAA19690.1| myosin [Mus musculus]
          Length = 1972

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 720  IRRIEAITGQRARSHLMGQDEKLKS--------LASFLKVSQGNVVGRVEEIWEEYRKLQ 771
              R  A   + AR  L  Q+++L+S        + + LK +   +  ++ ++ E     Q
Sbjct: 1775 TERSTAQKNESARQQLERQNKELRSKLQEVEGAVKAKLKSTVAALEAKIAQLEE-----Q 1829

Query: 772  LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +    R+ Q   + L          +  +  E      + + +  +++ + G
Sbjct: 1830 VEQEAREKQAATKSLKQKDKKLKEVLLQVEDE------RKMAEQYKEQAEKG 1875


>gi|22298932|ref|NP_682179.1| ClpB protein [Thermosynechococcus elongatus BP-1]
 gi|54035850|sp|Q8DJ40|CLPB1_THEEB RecName: Full=Chaperone protein ClpB 1
 gi|22295113|dbj|BAC08941.1| ClpB protein [Thermosynechococcus elongatus BP-1]
          Length = 871

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 732 RSHLMGQDEKLKSLASFLKVS---QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              L  +   LK   S L      +  V+ R++ I EE  K+ +   + +   ++   + 
Sbjct: 442 LEKLERELADLKEEQSRLNAQWQAEKEVIDRLQSIKEEIEKVNIEIQQAERNYDLNRAAE 501

Query: 789 HKIADVNFMSHIISEVDSKELKSV 812
            K   +  +   ++E ++K L+ +
Sbjct: 502 LKYGKLTELHKKLAEAEAK-LREI 524


>gi|329955625|ref|ZP_08296533.1| MutS2 family protein [Bacteroides clarus YIT 12056]
 gi|328526028|gb|EGF53052.1| MutS2 family protein [Bacteroides clarus YIT 12056]
          Length = 844

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 58/162 (35%), Gaps = 29/162 (17%)

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL------------KVS 752
           +      +E  ++    RIE     R    +  + EK + +   L            K  
Sbjct: 582 LRKAKEEAEQLMQEANARIENT--IRTIKEVQAEKEKTRQVRQELSDFRESMEALAAKEQ 639

Query: 753 QGNVVGRVEEIWEEY--RKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISEVDSKEL 809
           +  +  ++E++ E+   +K +  +  ++  L+ + L+  +   +   ++ I+   + K  
Sbjct: 640 EEKIARKIEKLKEKQNRKKEKKANRGQENALSAQALAEQQARKEAERLAAIVPGSNVK-- 697

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
                 ++ +   G ++        K +V+   +     + +
Sbjct: 698 ------IKGQTSVGEVL----EINGKNAVVAFGSIKTTVKLD 729


>gi|326430610|gb|EGD76180.1| hypothetical protein PTSG_00886 [Salpingoeca sp. ATCC 50818]
          Length = 1612

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 728  GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
            G+R +  L    E+ + +A  LK ++ ++  +VE++ ++  + Q   A  + Q+     +
Sbjct: 979  GERLQKLLQELREQAEEIAR-LKAAEASLRSQVEQLEKDKAEAQDTIADLEDQVAALQQA 1037

Query: 788  CHKIAD 793
              ++  
Sbjct: 1038 REEVEG 1043


>gi|284161167|ref|YP_003399790.1| chromosome segregation protein SMC [Archaeoglobus profundus DSM
           5631]
 gi|284011164|gb|ADB57117.1| chromosome segregation protein SMC [Archaeoglobus profundus DSM
           5631]
          Length = 1135

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L  ++ +L+     LK S+  +  ++ E+  E + L+    K    +             
Sbjct: 649 LFDRERRLREDIENLKRSRSELESKLSEVELERKDLEKRIEKLNEDITSLKSKISTSG-- 706

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 + E   K LK + + L++K +   I+
Sbjct: 707 ----AKVDEFS-KLLKDIEEKLKEKRREAEIL 733


>gi|227524448|ref|ZP_03954497.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088407|gb|EEI23719.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Lactobacillus
           hilgardii ATCC 8290]
          Length = 869

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 12/98 (12%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQLIHAKRKLQ 780
           R+E  +   A      Q  +L+   + LK         R++E+ EE   ++        +
Sbjct: 404 RVEMNSSPTALDQSNRQLMRLEVEEAALKQETDEASKKRLKEVQEELANIKEKVNGLNAR 463

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
              E  +  KI D             K+L    + L++
Sbjct: 464 WKQEKDAIQKIGDKK-----------KQLDQARNDLKQ 490


>gi|225159026|ref|ZP_03725336.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
 gi|224802405|gb|EEG20667.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
          Length = 211

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 24/149 (16%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           ++ +L+S LK ++  +  R +E+     +L    A+        +    +I         
Sbjct: 67  EIDNLSSELKDARALLTKREQELTLREERLNARAAELDQARVELEALRDEIGS---RLTE 123

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLARLS 859
           I   + K LKS+            + ++    +   A +L ++  D         +    
Sbjct: 124 IEGEEMKNLKSLAQTYSNLSPKAAVAIMQKLDDDMTARLLSLMKADAT-----GAIFEE- 177

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                         MAQ+   + N A +A
Sbjct: 178 --------------MAQAAITDPNMAKRA 192


>gi|167536174|ref|XP_001749759.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771686|gb|EDQ85348.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1812

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 28/154 (18%)

Query: 755  NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISEVDSKELKSVM 813
            +    +++  E+ +  +   A+ +  ++  +    +  A+         + D    +  +
Sbjct: 896  DAEANLKQAREDAKDPEAATARAQSNVDAAEARLKEAQANYKQTKEQDDKDDMDAAEETL 955

Query: 814  DALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
               +++++  S    LV +++      L    + L D   A       A+ L        
Sbjct: 956  SKAREQLELASKPEFLVSVAEAG----LASAKKKLADGRKA----HAEAEAL-------- 999

Query: 872  PHMAQSGGP-------NGNKADQAIAGVASFLKK 898
               AQ GGP          +  QA++ V   LK+
Sbjct: 1000 --FAQEGGPSLAVLDWEIEQLRQALSKVEDELKQ 1031


>gi|126729046|ref|ZP_01744860.1| single-stranded-DNA-specific exonuclease RecJ [Sagittula stellata
           E-37]
 gi|126710036|gb|EBA09088.1| single-stranded-DNA-specific exonuclease RecJ [Sagittula stellata
           E-37]
          Length = 581

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 20/179 (11%)

Query: 725 AITGQRARSHLMGQDEKLKS--LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            + G R  +        L +  LAS        +  R+E +  E R+++       L   
Sbjct: 290 FVLGPRVNAGGRIGQADLGARLLASDNPAEAQAMAERLEALNAERREIEAAVRAAALAQA 349

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV--LI 840
                     D   +           +  V   L++      I++     E K S   + 
Sbjct: 350 EARGL-----DAPLIWAAGEGWHPGVVGIVASRLKEHTGRPSIVIGLDGAEGKGSGRSVA 404

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG-NKADQAIAGVASFLKK 898
            V  DL          RL+A+ L   GGG R  MA +G     ++ ++A+A ++  L+K
Sbjct: 405 GV--DLGASVQ-----RLAAEGLLIKGGGHR--MA-AGLTVARDRLEEAMARLSELLEK 453


>gi|157821653|ref|NP_001101103.1| GRIP and coiled-coil domain-containing protein 2 [Rattus
           norvegicus]
 gi|313118243|sp|D3ZZL9|GCC2_RAT RecName: Full=GRIP and coiled-coil domain-containing protein 2;
           AltName: Full=185 kDa Golgi coiled-coil protein
 gi|149038803|gb|EDL93092.1| LIM and senescent cell antigen-like domains 1 (predicted) [Rattus
           norvegicus]
          Length = 1679

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 735 LMGQDEKLKSLAS---FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           L  ++ +L+ + +    LK S         +     ++L+      + +   +D    KI
Sbjct: 902 LEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKI 961

Query: 792 ADVNFMSHIISEVDSKELKSVMDAL 816
             V   +    + + KE +++ D L
Sbjct: 962 KLVAVRAKKELDSNRKEAQTLRDEL 986


>gi|148226587|ref|NP_001086496.1| B-cell receptor-associated protein 31 [Xenopus laevis]
 gi|49898877|gb|AAH76645.1| Bcap31-prov protein [Xenopus laevis]
 gi|83405587|gb|AAI10710.1| Bcap31 protein [Xenopus laevis]
          Length = 244

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
               A+ ++   D+  K L S L V   ++      + E+ +KL+    K K +L     
Sbjct: 142 ASDAAKKYMEENDKLKKELKS-LGVEVSDLPD--TNVEEDNKKLKGEVRKLKEELESAKK 198

Query: 787 SCHKIA-DVNFMSHIISEV 804
           + HK   +V  +      +
Sbjct: 199 TLHKSESEVVAIKKQCEGL 217


>gi|325959074|ref|YP_004290540.1| MCP methyltransferase/methylesterase, cheR/cheB [Methanobacterium
           sp. AL-21]
 gi|325330506|gb|ADZ09568.1| MCP methyltransferase/methylesterase, CheR/CheB [Methanobacterium
           sp. AL-21]
          Length = 978

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            H+   + KLK     L  +   +    EE+     +LQ ++ + +      + S  ++ 
Sbjct: 656 EHIKALENKLKLTTERLNSTIEEMTTSNEELKSANEELQSMNEESQSTNEELETSKEELQ 715

Query: 793 DVN-FMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKE 833
            +N  ++ + +E+  K  EL +V D +     S  I  + +  +
Sbjct: 716 SINEELTTVNNELQMKIEELSTVNDDMTNLFNSTEIATIFVDND 759


>gi|298229270|ref|ZP_06962951.1| pneumococcal surface protein A [Streptococcus pneumoniae str.
           Canada MDR_19F]
          Length = 387

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK  +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 236 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 289

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + EL++ +  L+K+I +  I+L G   E 
Sbjct: 290 KADELQNKVADLEKEISNLEILLGGADSED 319


>gi|227510297|ref|ZP_03940346.1| S14 family endopeptidase Clp [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227189949|gb|EEI70016.1| S14 family endopeptidase Clp [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 869

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 12/98 (12%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQLIHAKRKLQ 780
           R+E  +   A      Q  +L+   + LK         R++E+ EE   ++        +
Sbjct: 404 RVEMNSSPTALDQSNRQLMRLEVEEAALKQETDEASKKRLKEVQEELANIKEKVNGLNAR 463

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
              E  +  KI D             K+L    + L++
Sbjct: 464 WKQEKDAIQKIGDKK-----------KQLDQARNDLKQ 490


>gi|227513304|ref|ZP_03943353.1| S14 family endopeptidase Clp [Lactobacillus buchneri ATCC 11577]
 gi|227083505|gb|EEI18817.1| S14 family endopeptidase Clp [Lactobacillus buchneri ATCC 11577]
          Length = 869

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 12/98 (12%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKLQLIHAKRKLQ 780
           R+E  +   A      Q  +L+   + LK         R++E+ EE   ++        +
Sbjct: 404 RVEMNSSPTALDQSNRQLMRLEVEEAALKQETDEASKKRLKEVQEELANIKEKVNGLNAR 463

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
              E  +  KI D             K+L    + L++
Sbjct: 464 WKQEKDAIQKIGDKK-----------KQLDQARNDLKQ 490


>gi|221131645|ref|XP_002156108.1| PREDICTED: similar to nonmuscle myosin heavy chain [Hydra
           magnipapillata]
          Length = 535

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 733 SHLMGQDEKLKSLASFL-------KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
             +  +DEKL +  S         K+S      R +++    + L+   A    + +  +
Sbjct: 216 RDVAARDEKLDAAKSAFSKLERDSKLSLDEEKKRSQQLTTANKNLESRIAALLAESDEAN 275

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               +   V    + + E + KE++S M+ L+ + QS I
Sbjct: 276 YRAEEQQKV-IRKYQVEE-ELKEVRSEMNTLKNQYQSAI 312


>gi|195117174|ref|XP_002003124.1| GI17741 [Drosophila mojavensis]
 gi|193913699|gb|EDW12566.1| GI17741 [Drosophila mojavensis]
          Length = 1869

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 21/141 (14%)

Query: 705  IMLLYIVSESSIRAGIRRIEAITGQ-RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            + L     E  ++   +++    G  +    L G   K K L   LK S+        ++
Sbjct: 974  LQLSKESLEEELQKCKQKLTLAEGDLQRLKQLNGTSSKTKELEQKLKASEEESKKLSTKL 1033

Query: 764  WEEYRKLQLIHAKRK------------------LQLNVEDLSCHKIADVNFMSHIISEVD 805
             +   KL+   ++ K                     ++E     ++ D   +   IS++D
Sbjct: 1034 KDLEDKLKKQESQLKQTEASKSTLEAQNKREKEKSSSLEKDLEKQLKDREKLEAKISQLD 1093

Query: 806  SKEL--KSVMDALQKKIQSGI 824
             + L  K   +  +  ++  I
Sbjct: 1094 GELLSAKKAAEKTKSSLEKDI 1114


>gi|123428136|ref|XP_001307407.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121889034|gb|EAX94477.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2114

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
               L+ Q  +L  +   L  S  +++ ++ E+     +L+  + K K           ++
Sbjct: 1621 IKVLVDQLNELLKVKDQLNGSNEDLLKKITELQGLKDQLEENYLKLKDDNQTISEMKEQL 1680

Query: 792  ADVN-FMSHIISEVDS 806
             DVN  +   ISE++ 
Sbjct: 1681 DDVNELLKERISELEG 1696



 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +    +L  ++ +L  L++ L      +  ++  + E+  +L+      +L   + +L  
Sbjct: 1949 KELEENLKLKENQLSDLSNTLSTISNALNSQISGLKEQIEELKQKQNPNELIEKLNELQE 2008

Query: 789  HKIADVNFMSHIISEVD--SKELKSVMDALQKKIQS 822
             K      +   I++ D  ++EL+  +D L+K+ Q+
Sbjct: 2009 EKKK----LEQDITDKDKLNEELQKRVDELEKEKQN 2040


>gi|118092958|ref|XP_421743.2| PREDICTED: similar to CTCL tumor antigen se20-9 isoform 2 [Gallus
           gallus]
          Length = 1234

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V   VE+     ++L+    KRK +   +    
Sbjct: 901 DEAKRIKAEQEKELSKFQNPLKNKKKEVFCEVEKAP---KELRKELLKRKKEELAQSQHA 957

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            +     F+     E+D+  LK ++   + ++
Sbjct: 958 QEQE---FVQKQQQELDA-SLKKIIQQQKTEL 985


>gi|326913823|ref|XP_003203233.1| PREDICTED: GRIP and coiled-coil domain-containing protein 2-like
            [Meleagris gallopavo]
          Length = 1709

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 14/102 (13%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-------EEYRKLQLIHAKRKLQL 781
            +R    L  Q +      S L  +  +++ RVE +         +  +LQ + AK + +L
Sbjct: 1069 ERQIDDLTRQLQVSSQQVSSLHSANEDLLARVETLQCNSKLLEAQILELQKVKAKAEKEL 1128

Query: 782  NVEDLSCH-KIADVNFMSHIISEVDS------KELKSVMDAL 816
              E L    KI + +     + E+        K L+ +M  L
Sbjct: 1129 EAEKLLKEQKIKEHSGTLRELEELQMQLQKEKKYLQKIMQEL 1170


>gi|291234782|ref|XP_002737320.1| PREDICTED: viral A-type inclusion protein-like [Saccoglossus
           kowalevskii]
          Length = 4349

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---------- 778
            + R+ L  +++ +K L+  LK ++  V+       +  R L+    + K          
Sbjct: 582 DKLRTELKEKEQTIKDLSKSLKETETKVLKAKAHSKKRMRNLETELEQLKQSDSLAEEVS 641

Query: 779 -LQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGI 824
            LQ  + +L   K   +        E++ K  EL+  +D L ++ Q  I
Sbjct: 642 GLQHQIAELEDEK-GQLQLKLVDFDEMNIKLVELQDTIDLLTQEKQELI 689


>gi|160946154|ref|ZP_02093365.1| hypothetical protein PEPMIC_00116 [Parvimonas micra ATCC 33270]
 gi|158447677|gb|EDP24672.1| hypothetical protein PEPMIC_00116 [Parvimonas micra ATCC 33270]
          Length = 511

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 42/95 (44%), Gaps = 13/95 (13%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-------QLIHAKRKLQLN-V 783
           R+ +   + +L +    L     N+  + E + +E + L       + +  K+K +L  V
Sbjct: 79  RNEIQKLERRLITKEENLDKKNENLDKKNERLNKELKALEVKETEIEKLVEKQKEELERV 138

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            ++S  +  ++     I+ EV  + +K   + +++
Sbjct: 139 ANISSEEAKEI-----ILEEVRQESIKDAANIIRE 168


>gi|326664643|ref|XP_696031.4| PREDICTED: laminin subunit alpha-3 [Danio rerio]
          Length = 1028

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV--SQGNVVGR 759
           + ++  L   SE+ ++   +R        A+      ++ L+ + + +K          R
Sbjct: 62  SADLAKLLEKSENMVKDMEKRSFTTQKDAAKKEQAEANKFLEDVKNIVKQCDQNEEASKR 121

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN--FMSHIISEVDSKELKSVMDALQ 817
           V+ +   Y            Q          + DVN   +  I+  V+  +L+   D ++
Sbjct: 122 VDGLLSNYETKLKELEDLLKQAENMVKKAKNLNDVNAQGLKDILKRVN--DLQRERDVVR 179

Query: 818 KKI 820
            +I
Sbjct: 180 DQI 182


>gi|156843637|ref|XP_001644885.1| hypothetical protein Kpol_1065p43 [Vanderwaltozyma polyspora DSM
           70294]
 gi|238686812|sp|A7TL64|EIF3A_VANPO RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 110 kDa subunit homolog; Short=eIF3
           p110; AltName: Full=Translation initiation factor eIF3,
           p110 subunit homolog
 gi|156115537|gb|EDO17027.1| hypothetical protein Kpol_1065p43 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 942

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 78/249 (31%), Gaps = 21/249 (8%)

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  A+   +   +  + + +T     F++      T  E +  E+   + +        
Sbjct: 467 LLQAAVEDYVSISIDHDSNTVTFFKDPFEIISKAAGTVEEEEEEEEEEGEEVEGEEAETG 526

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             +  E                 R   +     +       +    + S   ++ L    
Sbjct: 527 EEIVEEGEEHENEENKEPEPVITRTTFIRNRLAELSNVLEEIDAFKNASYLEKVKLARET 586

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             +  +  I  ++ I   RA+     + + + S A     ++ +   R  +I EE   L+
Sbjct: 587 LITQTKDSIENLKQIAEDRAKRAQEQKKKYMASAAVR---AEEDAEIRQRQILEEKAALE 643

Query: 772 LIHAK-------RKLQLNVEDLSCHKIADV-----------NFMSHIISEVDSKELKSVM 813
               +        K +   EDL   +I                 S  +  +D KE+K+++
Sbjct: 644 AKLEQDAHRRLVEKKKREFEDLKQREIQKFIDEFNKKDHAAKIASEEVQGLDIKEIKTLI 703

Query: 814 DALQKKIQS 822
            +   + +S
Sbjct: 704 FSKLSQDKS 712


>gi|329929042|ref|ZP_08282844.1| hypothetical protein HMPREF9412_1420 [Paenibacillus sp. HGF5]
 gi|328937031|gb|EGG33460.1| hypothetical protein HMPREF9412_1420 [Paenibacillus sp. HGF5]
          Length = 360

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 54/129 (41%), Gaps = 15/129 (11%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS- 787
           ++A   L    +++ +L + +K  +  +  +VE   +E  K     A+++ +   + ++ 
Sbjct: 240 RKAEKALSESQQRIAALEADMKAKEEELNAKVEAAVKEREKEMAEQARKREEEAAQQVAE 299

Query: 788 ----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIV 841
                 K  +   +   +   D+     ++   ++ I  G + L+   ++KKA    L  
Sbjct: 300 LQEQLRKNNNTAAIKVKLH-FDA-----LVGDFKELI--GAVALLENEEQKKAISERLAA 351

Query: 842 VTEDLLDRF 850
           + +D+  + 
Sbjct: 352 LCDDMKAKL 360


>gi|326920786|ref|XP_003206649.1| PREDICTED: cutaneous T-cell lymphoma-associated antigen 5-like
           [Meleagris gallopavo]
          Length = 1230

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
            +D+    L+   K   G +  R+E +  E   LQ  + + + ++               
Sbjct: 759 ERDQMYSKLSDESKAK-GELTERIENLQSEQVSLQSENERLESEVQKLQQKL------KV 811

Query: 797 MSHIISEVDSKELKSVMDALQKKIQS 822
           M+ +  E + K  + +    ++++Q 
Sbjct: 812 MTELYQENEMKLHRKLTVEERERLQK 837


>gi|312792541|ref|YP_004025464.1| secretion protein hlyd family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179681|gb|ADQ39851.1| secretion protein HlyD family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 466

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 38/96 (39%), Gaps = 2/96 (2%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-- 779
           RI +  G + +   + + E +K      K+     V + + + ++ R+ +   +  K   
Sbjct: 67  RIISYVGGKVKEIFVKEGEYVKKGEVLFKIDDEEYVKKRDLLKQQLREYEKKVSDLKELR 126

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +   +  S     +V ++ ++    +  +LK   + 
Sbjct: 127 KSIEKGESLRNKNNVYYLRYLSYSYEVNKLKKAAEE 162


>gi|291389910|ref|XP_002711459.1| PREDICTED: myosin heavy chain [Oryctolagus cuniculus]
          Length = 1962

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 1070 QIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNK 1129

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +VN +   + + +++  ++ + 
Sbjct: 1130 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLED-EARTHEAQIQ 1188

Query: 815  ALQKKIQSGI 824
             +++K    +
Sbjct: 1189 EMRQKHSQAV 1198


>gi|225182110|ref|ZP_03735538.1| glycyl-tRNA synthetase, alpha subunit [Dethiobacter alkaliphilus
           AHT 1]
 gi|225167197|gb|EEG76020.1| glycyl-tRNA synthetase, alpha subunit [Dethiobacter alkaliphilus
           AHT 1]
          Length = 295

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 29/132 (21%)

Query: 141 KKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEI 200
           +++  +  +  IR    DN W     G  G   E++ D                   +EI
Sbjct: 97  RELGIVPEEHDIRFV-EDN-WESPTLGAWGLGWEVWLD------------------GMEI 136

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK----TNNYDIDLFKHLIQAS 256
                 QF    +     +  +S++   GLER+A  +Q K      N+  D+    I   
Sbjct: 137 -----TQFTYFQQVGSIDVDAVSVEITYGLERIAMYIQGKENVFHINWVGDVNYGEIFHR 191

Query: 257 EQVTGMKYEGNN 268
            +V    Y    
Sbjct: 192 AEVEHSAYCFEE 203


>gi|198419105|ref|XP_002120135.1| PREDICTED: similar to Tax1 binding protein 1, partial [Ciona
           intestinalis]
          Length = 317

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L   ++  K +    K         ++++ ++ + L+   A  K    +E ++  + 
Sbjct: 236 VKLLQRLEKAEKRIEKT-KCDLATAQTTIDKLHQDIKSLEAEVAAAKQDRMLEKVNYEEE 294

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQ 817
             +  +      V+   L+   D ++
Sbjct: 295 IKIRELMMQEKNVEMNGLR---DEIK 317


>gi|198414208|ref|XP_002119278.1| PREDICTED: hypothetical protein [Ciona intestinalis]
          Length = 805

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKV---SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           TG R        +   K + +F++     +  ++ +     E+ +K++    K + +   
Sbjct: 503 TGLRKAIRGRDIEALEKEIQAFIEAMVPGEEELLEKAHRTLEKLKKIKRKEEKAEKRRLE 562

Query: 784 EDLS-CHKIADVNF-MSHIISEVDSKELKSVMD 814
           E+     +I ++   +   I   D  EL++ MD
Sbjct: 563 EEAKRKEEIGELTAKLQLAIESRDINELQNAMD 595


>gi|166235158|ref|NP_035646.2| synaptonemal complex protein 1 [Mus musculus]
          Length = 993

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             Q + L+S  + LK    N    +EE+ +E + L+   +    QLN  ++   K+ 
Sbjct: 609 EKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLE 665


>gi|170099836|ref|XP_001881136.1| coiled-coil protein [Laccaria bicolor S238N-H82]
 gi|164643815|gb|EDR08066.1| coiled-coil protein [Laccaria bicolor S238N-H82]
          Length = 1783

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 50/118 (42%), Gaps = 12/118 (10%)

Query: 720 IRRIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +RR++++ G+R  A   +  + + L+     L+ +        ++  EE   L++   + 
Sbjct: 293 VRRLQSLLGERDKAIQDMKEEKDDLEKSVESLRTALRQQEQSADKYKEENWNLEVTLQEL 352

Query: 778 KLQLNVEDLSCHKIAD--VNFMSHIISEVDSKE--------LKSVMDALQKKIQSGII 825
           + QL     S  ++          + +  D+ +        L+++++ ++ K ++ I 
Sbjct: 353 RTQLGDSQSSTQRLESEHKRLTKSLATARDAGDQNKNEVERLQNIVEEMKAKHETDIA 410


>gi|126273299|ref|XP_001375943.1| PREDICTED: similar to M-phase phosphoprotein 1, [Monodelphis
            domestica]
          Length = 2097

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL----QLNVEDLS 787
               +  + + +  ++S        +  ++E++++E R ++  + + KL     +N ++L 
Sbjct: 1325 IEAIWKECKAMVKISSNKSNQIQELEQQIEKLYQEVRDIKEENNQLKLNISENMNQDNLL 1384

Query: 788  CHKIADVNFMSHIISEVDSKELKSVMDA 815
              K   +  +     E++ K ++  ++ 
Sbjct: 1385 KEKENTIKQLK---EELEGKIIRLAVEE 1409


>gi|118091916|ref|XP_001234934.1| PREDICTED: similar to CTAGE family, member 5 [Gallus gallus]
          Length = 1045

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
            +D+    L+   K   G +  R+E +  E   LQ  + + + ++               
Sbjct: 573 ERDQMYSKLSDESKAK-GELTERIENLQSEQVSLQSENERLESEVQKLQQKL------KV 625

Query: 797 MSHIISEVDSKELKSVMDALQKKIQS 822
           M+ +  E + K  + +    ++++Q 
Sbjct: 626 MTELYQENEMKLHRKLTVEERERLQK 651


>gi|107103243|ref|ZP_01367161.1| hypothetical protein PaerPA_01004312 [Pseudomonas aeruginosa PACS2]
          Length = 686

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 36/215 (16%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA--RSHLMGQDEKLKSLASFLKVSQGNV 756
           V+   E+ L  I  E ++    + I  +  +R      +  ++E++K +     VS+   
Sbjct: 326 VAREREVELQKIEKEKALEEQRKNIANVIRERVAVEKTVAQEEERIKEVRE---VSEAER 382

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           V +V  +  +    Q +  + K     E  S HK  ++N M+    E  SK+        
Sbjct: 383 VKQVILLQAQAEAEQELVRQVKQAEADEARSKHKAVEINTMAQAELEAASKQA-----EA 437

Query: 817 QKKIQSGIIM--LVGISKEKKASVLIVVTED----LLDRFNAVDLARLS----------A 860
           +K++  GI          + +   +    ++       R  A  L   +          A
Sbjct: 438 KKRLAEGIEAERAAPGLADARVLEVTAAAKEKDGLAAARVRAEQLIAEARGDEERGLADA 497

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           +VL           AQ+     +   +A       
Sbjct: 498 RVLE----------AQAAAKEKDGLAEAKVLAEKL 522


>gi|71655403|ref|XP_816290.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70881407|gb|EAN94439.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 416

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 29/166 (17%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H   T E+      + S +   +RR E    Q+A    + +    +            + 
Sbjct: 229 HRFRTRELAGPSEKATS-VETRLRR-EFAVEQQALQDRLERRHMERE---------EQLT 277

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            R  E+ EE ++L  +  KRK Q+        ++            + +K  K++   L+
Sbjct: 278 RRCRELEEENKRLTALATKRKEQMRRTAEEVEQL------------ISAK--KTLEQRLR 323

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           +K        +  + +KK  + +    D++ + +A D     AK +
Sbjct: 324 RKSAIDATADITDTVKKKKDLAVG---DVISKVSAAD-VAPVAKEI 365


>gi|46137367|ref|XP_390375.1| hypothetical protein FG10199.1 [Gibberella zeae PH-1]
          Length = 1081

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
           S+ ++   ++++    ++ + +  + K  L    L    ++    +       D+++L +
Sbjct: 833 SEKDLDQELKDLL--RKRTETLEKRAKQDLEAAQLLGRMLSGYATLRKFYELRDAEDLDN 890

Query: 812 V----MDALQKKIQSGIIMLVGISKEK 834
           +       L+K+  S ++ ++  S + 
Sbjct: 891 ISSTKALKLKKQAASALVAVISSSDDN 917


>gi|325680631|ref|ZP_08160173.1| NlpC/P60 family protein [Ruminococcus albus 8]
 gi|324107701|gb|EGC01975.1| NlpC/P60 family protein [Ruminococcus albus 8]
          Length = 501

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 42/182 (23%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA---- 792
            Q +  +S    LK  Q  +  ++EE   E  K +     +K +          +     
Sbjct: 41  RQPDTYESELESLKAQQKALDKKIEEAQAEIDKQKDDIEAQKAKYTAVKAKIDNVEDQLM 100

Query: 793 ---------DVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
                    D          EV ++E++ + D    +++S  +     S E     +++ 
Sbjct: 101 KNEDAMVELDSRLREARAELEVKNEEIEQLRDEFMGRLKSMYLAGGTTSYEN----VLIN 156

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ------AIAGVASFL 896
           + D  D    ++L +  A+                   + +  D+      AI  V + +
Sbjct: 157 SADFYDVLMRLELVKRVAEH------------------DNDALDELMEKKRAIEAVQAEI 198

Query: 897 KK 898
           ++
Sbjct: 199 EE 200


>gi|316971882|gb|EFV55605.1| patched family protein [Trichinella spiralis]
          Length = 1179

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 7/158 (4%)

Query: 640  NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH- 698
            N+ + + L  VT +        S     L  K +D V  +S    +       +  G   
Sbjct: 907  NEQLKKQLAHVTELGQTYKRNLSEEVVELRKKLDDTVPDISCREAELAQLRIEVEEGKQK 966

Query: 699  -VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
               +T  +       +S  + G   +    G +       Q EKL +    L+     + 
Sbjct: 967  LAQATRMVAFFKAQCKSDSQNGNVMLCRKHGDK-----QAQVEKLTNELKLLECRMRELN 1021

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             R ++  +E   ++    + +LQ   + L   K+ + N
Sbjct: 1022 ERYQQSQDEKLAMKKQLRQAELQAKKDRLIAEKVIEEN 1059


>gi|312071848|ref|XP_003138797.1| hypothetical protein LOAG_03212 [Loa loa]
 gi|307766040|gb|EFO25274.1| hypothetical protein LOAG_03212 [Loa loa]
          Length = 1155

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 57/127 (44%), Gaps = 1/127 (0%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+ +    L     E    AG    + +  Q     +  +   L++++  ++  +     
Sbjct: 155 VAKSCAATLAKEKEELKKTAGKNESKFMECQHQLRIVEQKLALLENISIDIETDKMPNAE 214

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            ++++ +E   +Q   ++ KL+L +++    K A++    + ++  D +E+  +   L+K
Sbjct: 215 TLKKLQDENAAMQGKISELKLELEIKE-EGEKSAEIWRKKYDVAVGDMEEMHKIKTELEK 273

Query: 819 KIQSGII 825
           ++++  +
Sbjct: 274 ELENKRV 280


>gi|296387763|ref|ZP_06877238.1| hypothetical protein PaerPAb_06404 [Pseudomonas aeruginosa PAb1]
 gi|313109135|ref|ZP_07795106.1| hypothetical protein PA39016_001680023 [Pseudomonas aeruginosa
           39016]
 gi|310881608|gb|EFQ40202.1| hypothetical protein PA39016_001680023 [Pseudomonas aeruginosa
           39016]
          Length = 688

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 36/215 (16%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA--RSHLMGQDEKLKSLASFLKVSQGNV 756
           V+   E+ L  I  E ++    + I  +  +R      +  ++E++K +     VS+   
Sbjct: 328 VAREREVELQKIEKEKALEEQRKNIANVIRERVAVEKTVAQEEERIKEVRE---VSEAER 384

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           V +V  +  +    Q +  + K     E  S HK  ++N M+    E  SK+        
Sbjct: 385 VKQVILLQAQAEAEQELVRQVKQAEADEARSKHKAVEINTMAQAELEAASKQA-----EA 439

Query: 817 QKKIQSGIIM--LVGISKEKKASVLIVVTED----LLDRFNAVDLARLS----------A 860
           +K++  GI          + +   +    ++       R  A  L   +          A
Sbjct: 440 KKRLAEGIEAERAAPGLADARVLEVTAAAKEKDGLAAARVRAEQLIAEARGDEERGLADA 499

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           +VL           AQ+     +   +A       
Sbjct: 500 RVLE----------AQAAAKEKDGLAEAKVLAEKL 524


>gi|262372001|ref|ZP_06065280.1| chaperonin GroL [Acinetobacter junii SH205]
 gi|262312026|gb|EEY93111.1| chaperonin GroL [Acinetobacter junii SH205]
          Length = 544

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 12/108 (11%)

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKELK 810
           +   +  RV++I  +  +    + K KLQ  V  L       V  +     +EV+ KE K
Sbjct: 338 NAEQIAERVQQIRAQIEESTSEYDKEKLQERVAKL----AGGVAVIKIGAATEVEMKEKK 393

Query: 811 SVMDAL----QKKIQSGIIMLVGISKEKKASV---LIVVTEDLLDRFN 851
             +D      +  ++ G++   G++  +  +V   L    ED     N
Sbjct: 394 DRVDDALHATRAAVEEGVVAGGGVALVRAVNVLEGLKGANEDQTAGIN 441


>gi|225860164|ref|YP_002741673.1| pneumococcal surface protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298501925|ref|YP_003723865.1| manganese ABC transporter substrate-binding lipoprotein
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727349|gb|ACO23200.1| pneumococcal surface protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237520|gb|ADI68651.1| pneumococcal surface protein A (manganese ABC transporter
           substrate-binding lipoprotein) [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327390537|gb|EGE88877.1| choline binding protein A [Streptococcus pneumoniae GA04375]
          Length = 724

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK  +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 236 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 289

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + EL++ +  L+K+I +  I+L G   E 
Sbjct: 290 KADELQNKVADLEKEISNLEILLGGADPED 319


>gi|118380105|ref|XP_001023217.1| hypothetical protein TTHERM_00494240 [Tetrahymena thermophila]
 gi|89304984|gb|EAS02972.1| hypothetical protein TTHERM_00494240 [Tetrahymena thermophila
           SB210]
          Length = 718

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 15/96 (15%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q A   L  ++EKL+ L   +K         ++ + +   KL+    K   +   +    
Sbjct: 333 QEANKKLATKEEKLQQLTEKVKWQDAE----IKRLADINTKLEKEAQKINEE---DKKLK 385

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             I  +  + + +SE +        D L+K+ +S +
Sbjct: 386 QAIDKIKMLDNKLSEKE--------DELKKQQKSAV 413


>gi|3024612|sp|Q62209|SYCP1_MOUSE RecName: Full=Synaptonemal complex protein 1; Short=SCP-1
 gi|558603|emb|CAA86262.1| synaptonemal complex protein 1 [Mus musculus]
 gi|187951819|gb|AAI37968.1| Synaptonemal complex protein 1 [Mus musculus]
          Length = 993

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             Q + L+S  + LK    N    +EE+ +E + L+   +    QLN  ++   K+ 
Sbjct: 609 EKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLE 665


>gi|153607566|dbj|BAF74050.1| merozoite surface protein-1 [Plasmodium hylobati]
          Length = 1830

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 743  KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
              ++   K     V  +++++ ++ ++ +     R+ ++       ++  ++N +     
Sbjct: 1552 NKMSDLYKKQFDAVNEKIKDLEDQIKEQEEEIKIRQEEIQRTSNDTNETDEINQLIAQKE 1611

Query: 803  EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            E   K L   +++++K+ +S + M    +   K  +
Sbjct: 1612 E-SKKYL-PFLNSIKKEYESLVSMATTYTDNLKKFI 1645


>gi|126465380|ref|YP_001040489.1| hypothetical protein Smar_0472 [Staphylothermus marinus F1]
 gi|126014203|gb|ABN69581.1| hypothetical protein Smar_0472 [Staphylothermus marinus F1]
          Length = 140

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 48/136 (35%), Gaps = 14/136 (10%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW------EEYRKLQLIHAKRKLQLNV 783
                     + +K++   L   +  +   +  +       E+ R+L+ +      +   
Sbjct: 3   AVVKEFSSFADLIKNIDEELNTLKQQLADYLRRLEDIRAKSEQERRLRELLKNLTGEEQT 62

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM------LVGISKEKKAS 837
                  + DV    +  +E ++  ++ ++D + K IQS   +      L  +  E K  
Sbjct: 63  SKGKVVDLKDVKLYVNPDAEQEATVMEEIIDRINKTIQSLQSIRKALEPLSNVEVEAKIV 122

Query: 838 VLI--VVTEDLLDRFN 851
           V+    V   ++ + +
Sbjct: 123 VVYKEGVPSSIILKLS 138


>gi|15598924|ref|NP_252418.1| hypothetical protein PA3729 [Pseudomonas aeruginosa PAO1]
 gi|254236639|ref|ZP_04929962.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254242419|ref|ZP_04935741.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9949896|gb|AAG07116.1|AE004792_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126168570|gb|EAZ54081.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126195797|gb|EAZ59860.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 688

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 36/215 (16%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA--RSHLMGQDEKLKSLASFLKVSQGNV 756
           V+   E+ L  I  E ++    + I  +  +R      +  ++E++K +     VS+   
Sbjct: 328 VAREREVELQKIEKEKALEEQRKNIANVIRERVAVEKTVAQEEERIKEVRE---VSEAER 384

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           V +V  +  +    Q +  + K     E  S HK  ++N M+    E  SK+        
Sbjct: 385 VKQVILLQAQAEAEQELVRQVKQAEADEARSKHKAVEINTMAQAELEAASKQA-----EA 439

Query: 817 QKKIQSGIIM--LVGISKEKKASVLIVVTED----LLDRFNAVDLARLS----------A 860
           +K++  GI          + +   +    ++       R  A  L   +          A
Sbjct: 440 KKRLAEGIEAERAAPGLADARVLEVTAAAKEKDGLAAARVRAEQLIAEARGDEERGLADA 499

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           +VL           AQ+     +   +A       
Sbjct: 500 RVLE----------AQAAAKEKDGLAEAKVLAEKL 524


>gi|323948553|gb|EGB44492.1| colicin pore forming domain-containing protein [Escherichia coli
           H252]
          Length = 253

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 30/167 (17%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDLSCHK 790
            +  +   +  +A  L+ +Q +V  +V       +  +KLQ     ++ + +  +     
Sbjct: 50  DVQSKQATVSRVAGELENAQKSVDVKVTGFPGWRDVQKKLQRQLEAKQAEYSAVENELKN 109

Query: 791 IADVN-FMSHIISEVDSKELKSVMDAL-QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
                   +  + E + K LK   DAL + +I+  +        +        +TE   +
Sbjct: 110 AVSFRDGKAAEVKEAEQK-LKEAQDALEKSQIKDAV--------DTMVGFYQYITEQYGE 160

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           ++    +A+  A+   G                    D+A+A    +
Sbjct: 161 KY--AKIAQDLAEKSKGKK--------------IQGVDEALAAFEKY 191


>gi|313235359|emb|CBY19704.1| unnamed protein product [Oikopleura dioica]
          Length = 2416

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 11/112 (9%)

Query: 736  MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI---- 791
              +   ++     LK        +VEE  +E    +   AK  +   V  ++   +    
Sbjct: 2252 QEEKSAIEEAVKTLKADSEVATPKVEEKTDEKLPEEAELAKEAISSAVSAINKESVSEPA 2311

Query: 792  -----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                  D + +       D KE++  +  +++ I+ G+  L          +
Sbjct: 2312 EFKPKDDESKVEESYQGSDPKEVEGSI--IKESIKEGVAALNKTDDSGVVQI 2361


>gi|313884555|ref|ZP_07818316.1| NlpC/P60 family protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620339|gb|EFR31767.1| NlpC/P60 family protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 527

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 50/138 (36%), Gaps = 21/138 (15%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLNV 783
             + L     ++      LK     ++        ++E++ +E + L+ +  KR+  L  
Sbjct: 55  VYTELQNAYAQI----EALKAQADELLNDIDADDAKLEDLNQEIKTLEEVIEKRQALLAK 110

Query: 784 EDLSCH-KIADVNFMSHIISEVDSKEL--K-SVMDALQKKIQSGIIMLVGISKEKKASVL 839
           +           N+++++ S     +L  +  V++ L +  +  I       KE K    
Sbjct: 111 QARKVQVSAGTSNYLNYVASSKSVSDLVGRVDVVNRLVEANKDMI----SAQKEDKE--A 164

Query: 840 IVVTEDLLDRFNAVDLAR 857
           +   +       A  +A+
Sbjct: 165 VESKKSETQATKAEKVAK 182


>gi|148676696|gb|EDL08643.1| mCG21281 [Mus musculus]
          Length = 2078

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 53/165 (32%), Gaps = 5/165 (3%)

Query: 652  RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                  +       AL   K  +         E             H +   ++      
Sbjct: 860  EEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHY 919

Query: 712  SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW---EEYR 768
             + ++++ + +I+ +T  + +     ++  L  L    K  +       E+     EE +
Sbjct: 920  LQENLKS-MEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELK 978

Query: 769  KLQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
             L+   A   KL      ++  ++  ++     I++  ++EL+  
Sbjct: 979  SLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEA 1023


>gi|18308026|gb|AAL67804.1| pneumococcal surface protein A [Streptococcus pneumoniae]
          Length = 608

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK  +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 204 IEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 257

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + EL++ +  L+K+I +  I+L G   E 
Sbjct: 258 KADELQNKVADLEKEISNLEILLGGADSED 287


>gi|73969651|ref|XP_538496.2| PREDICTED: similar to Hook-related protein 1 isoform 1 [Canis
           familiaris]
          Length = 2030

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 36/102 (35%), Gaps = 23/102 (22%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K      
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLK------ 676

Query: 785 DLSCHKIADVNFMSHIISEVDSK---------ELKSVMDALQ 817
                 +     ++  +  ++ +         EL+  +++L+
Sbjct: 677 ----KTLDGFKNLTFQLESLEKENSQLDEENLELRRNVESLK 714


>gi|91215359|ref|ZP_01252330.1| hypothetical protein P700755_09603 [Psychroflexus torquis ATCC
           700755]
 gi|91186311|gb|EAS72683.1| hypothetical protein P700755_09603 [Psychroflexus torquis ATCC
           700755]
          Length = 1138

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 22/57 (38%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             +L  + E L          Q  +  + +++ E+ ++L+  +   K  +++     
Sbjct: 656 LKNLAREQEDLSEAEENTSEEQEKLNEKFDKLKEDLKELEEKNEDLKAPMDIGSDKA 712


>gi|15643303|ref|NP_228347.1| hypothetical protein TM0537 [Thermotoga maritima MSB8]
 gi|4981051|gb|AAD35622.1|AE001729_2 hypothetical protein TM_0537 [Thermotoga maritima MSB8]
          Length = 758

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +  + +   Q+E LK+    + V   + +  + ++ E    L+      + ++       
Sbjct: 502 EELQEYSREQEEVLKNTLKEIGVDSEDKLKVLRDLLERRANLRKTRDSLEKEIANLMKEK 561

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            +I          S    +ELK  ++ ++ +++  ++
Sbjct: 562 EEIESSR------SNARIEELKREVEQIESELEKLVV 592


>gi|293375595|ref|ZP_06621869.1| peptidase, M23 family [Turicibacter sanguinis PC909]
 gi|292645812|gb|EFF63848.1| peptidase, M23 family [Turicibacter sanguinis PC909]
          Length = 385

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A   L     + ++L S LKV +  +      + +E   L+    K + Q         
Sbjct: 163 EAMDQLKSLVSEQQNLLSSLKVQKEELAASKASLEQERANLEAYEEKLQSQKAAIAKQIQ 222

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           ++         I  + ++E K++   L  +   G I+
Sbjct: 223 ELESERLSQAEIIAI-AEEQKNL---LVSQTSGGFII 255


>gi|237755991|ref|ZP_04584576.1| chaperonin GroL [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691854|gb|EEP60877.1| chaperonin GroL [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 544

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 21/124 (16%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKE 808
           K +  ++  R+E+I ++       + K KLQ  +  L       V  +     +E + KE
Sbjct: 336 KGNPEDIKARIEQIKKQIETTTSEYDKEKLQERLAKL----AGGVAIIKVGAATEAELKE 391

Query: 809 LKSVMDAL----QKKIQSGIIMLVGISKEKKASV------LIVVTEDLLDRFNAVDLARL 858
            K  +D      +  ++ GI+           ++      L  + E+  D+   + + + 
Sbjct: 392 KKDRVDDAVHATKAAVEEGIV------PGGGIALFRASRALCNIKEENTDKAWGIKIVKN 445

Query: 859 SAKV 862
           + KV
Sbjct: 446 ACKV 449


>gi|28211875|ref|NP_782819.1| hypothetical protein CTC02276 [Clostridium tetani E88]
 gi|28204317|gb|AAO36756.1| conserved protein [Clostridium tetani E88]
          Length = 228

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           E I        L+ +   +K     L+     +  +++ ++EE ++++    K + +   
Sbjct: 70  ELIKSNEEVEKLLEEINLVKEYNKRLEKEIEELTDKLQALYEENQQVKEEKEKIRDEK-K 128

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELK 810
           E L      D N  +    +++ K LK
Sbjct: 129 ELLKNSNSNDTNDENLKEKDLEIKSLK 155


>gi|53805116|ref|YP_113204.1| threonyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|73919805|sp|Q60AZ3|SYT_METCA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53758877|gb|AAU93168.1| threonyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 638

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 74/193 (38%), Gaps = 20/193 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  HLL  A+  +        G  +  DG  +D ++ +P T  +L++IE  ++++ AQ 
Sbjct: 73  HSTAHLLAQAVKALYPKAQVTIGP-VIQDGFYYDFSYERPFTPEDLEAIEAKMHELAAQA 131

Query: 647 LPVVTRIMNRED---AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           LPV  R M RE+      S   A          R   +     G  +  LC G HV  TG
Sbjct: 132 LPVERRTMPREEAIAYFRSLGEAYKAEIIEAIPRGEVISLYSQGDFT-DLCRGPHVPDTG 190

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            +    ++    I     R     G         ++E L+ +       + ++   ++ +
Sbjct: 191 RLNAFKLM---KIAGAYWR-----GD-------SRNEMLQRIYGTAWGDRKDLAAYLQRL 235

Query: 764 WEEYRKLQLIHAK 776
            E  R+      K
Sbjct: 236 EEAERRDHRKLGK 248


>gi|14590782|ref|NP_142852.1| chromosome segregation protein [Pyrococcus horikoshii OT3]
 gi|18202079|sp|O58687|RAD50_PYRHO RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|3257342|dbj|BAA30025.1| 879aa long hypothetical purine NTPase [Pyrococcus horikoshii OT3]
          Length = 879

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 3/122 (2%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           R     + E+ +     L +    +  ++EE+     +++    K K +    + +  ++
Sbjct: 654 RKFDQKKYEEKREKMMKLSMEIKGLETKLEELERRRDEIKSTIEKLKEERKERESAKMEL 713

Query: 792 ADVNFMSHIISEV--DSKELKSVMD-ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
             +N     I E+    KE K+++      KI      +     + K S + +  ED   
Sbjct: 714 EKLNIAIKRIEELRGKIKEYKALIKEEALNKIGEIASEIFSEFTDGKYSGIAIRAEDNKV 773

Query: 849 RF 850
           + 
Sbjct: 774 KL 775


>gi|331002415|ref|ZP_08325933.1| chromosome segregation protein SMC [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330410231|gb|EGG89665.1| chromosome segregation protein SMC [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 1185

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  Q          L     N+   +E+  +E   L+    K  LQ+ +++ S  +I
Sbjct: 304 IEILKEQINSENKNNESLSSRSENIDSDIEKKQKELDALEEE--KNSLQILLKESSEREI 361

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                + + + + D K     ++ L KK++S
Sbjct: 362 G----IFNELEDTDKK-----INELLKKLES 383


>gi|301779545|ref|XP_002925192.1| PREDICTED: nucleobindin-2-like [Ailuropoda melanoleuca]
          Length = 420

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 29/72 (40%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +E+LK   + + + +  +  + +E+ ++  +LQ  H + + Q         ++       
Sbjct: 344 EEELKEYENLISLQESELKKKADELQKQKEELQRQHDQLEAQKLEYHQVVQQMEQKKLQQ 403

Query: 799 HIISEVDSKELK 810
            I       ELK
Sbjct: 404 EIPPSGPGGELK 415


>gi|297741339|emb|CBI32470.3| unnamed protein product [Vitis vinifera]
          Length = 2686

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 724  EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
            E +  Q A   L  +D+ LK+    LK+       +V E+  E +KL      ++   + 
Sbjct: 2429 EMVAAQIALEKLRQRDQLLKTENEMLKLENVKHKKKVMELEGEVKKLSGQQNLQQRIHHH 2488

Query: 784  EDLSCHKIADVNFMSHIISEVDSKELKS--VMDALQKKI 820
              +        N +     ++ +K  ++  ++  +++++
Sbjct: 2489 AKIKAKN----NLLKIENEDLSNKLRRAEVILSRVKEEL 2523


>gi|225851311|ref|YP_002731545.1| hypothetical protein PERMA_1782 [Persephonella marina EX-H1]
 gi|225646030|gb|ACO04216.1| hypothetical protein PERMA_1782 [Persephonella marina EX-H1]
          Length = 292

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 36/137 (26%)

Query: 719 GIRRIEAITGQRARSHLMGQDEKLK---SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
             RR++A   +          + L     L S LK         ++ +     + +    
Sbjct: 157 NNRRLDAKKSKEDLDMQEEIKKLLAKNTELESQLKSKDEQ----IQTLKASLEEKEKEIQ 212

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           K + +    ++         + +  +SEV    ++ ++                     K
Sbjct: 213 KLQAEKQEAEIQA-------YRTEKLSEV-PDTVRDLL---------------------K 243

Query: 836 ASVLIVVTEDLLDRFNA 852
           AS+ +  T++ +D+  A
Sbjct: 244 ASLEVAKTKEEIDKLTA 260


>gi|169343101|ref|ZP_02864127.1| exonuclease SbcC [Clostridium perfringens C str. JGS1495]
 gi|169298739|gb|EDS80814.1| exonuclease SbcC [Clostridium perfringens C str. JGS1495]
          Length = 1172

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  +   LK       + + N+   +E++ EE   L+ I  K       E + C KI
Sbjct: 651 LKSLEEEFNTLKDKIEEFNLKKENLEKDLEKLKEEKNNLENIFNK------AEVILCEKI 704

Query: 792 ADVNFMSHIISEVDSKELK---SVMDALQKKIQ 821
                ++  + E+D KELK   S +++++ +++
Sbjct: 705 VREKEIASKVKELD-KELKLKNSELNSIKNELK 736


>gi|145522197|ref|XP_001446948.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414437|emb|CAK79551.1| unnamed protein product [Paramecium tetraurelia]
          Length = 598

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 733 SHLMGQDEKL----KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             L  Q   L      +     +       +++ I ++  +L+    + +L +  +    
Sbjct: 338 QQLKQQYNSLVSKFSQIQQQFTLKIQEKDEKIKSILKQNEELKKEIEQSQLIIQKQQQEL 397

Query: 789 HKIADVNFMSH---IISEVDSKELKS 811
           +KI+  N +     +   +  K LKS
Sbjct: 398 YKISQNNKIIKSPCVQQILSPKNLKS 423


>gi|154415300|ref|XP_001580675.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121914895|gb|EAY19689.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 395

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK----LQLNVEDLSCHK 790
           L  + E L+   S LK +   +    E++ ++  +L+      K     + N  D     
Sbjct: 148 LHSKLESLEKELSTLKNNNEQLKKDNEQLKKDNEQLKKDIKTVKDEITQEKNTNDQLFKS 207

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKK 819
           I D   M+ +    D   + + ++ L  K
Sbjct: 208 INDYGTMNQLRKSGDFDAIYNFLNDLSSK 236


>gi|15921537|ref|NP_377206.1| hypothetical protein ST1273 [Sulfolobus tokodaii str. 7]
 gi|15622323|dbj|BAB66315.1| 311aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 311

 Score = 38.6 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 730 RARSHLMGQDEKLKSLAS-FLKVSQGNVVGRVEEI----------WEEYRK--LQLIHAK 776
           +  S +  + E++K++     K+    ++ ++E++           EE +K  L++ + +
Sbjct: 83  QVISEIKKEFEQIKNVEKVKEKLDPLQILKKIEQLEWRLQTSSLSLEEEKKIILKIANLE 142

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           +KL+   +     +    N    +   V+   ++  +  L+ +I   +
Sbjct: 143 KKLETAKKLAQLKEKNTENRAELLAKRVELSTIRQRIVELRNQISEKV 190


>gi|329769722|ref|ZP_08261123.1| chaperone ClpB [Gemella sanguinis M325]
 gi|328838084|gb|EGF87702.1| chaperone ClpB [Gemella sanguinis M325]
          Length = 860

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 16/93 (17%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGR-VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
              +  +  +L+     L      V  R +E + EE   L+    K +LQ++ E      
Sbjct: 412 LDTINRKVMQLEIEEKALSSEDDEVSQRRLENLKEELANLKEEQNKLQLQVDSEKEKLSA 471

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +               K+L+  +D ++ +++  
Sbjct: 472 V---------------KDLREKIDRVKLELEQA 489


>gi|317151318|ref|XP_001824577.2| hypothetical protein AOR_1_408084 [Aspergillus oryzae RIB40]
          Length = 428

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDA 815
            +V+E+ ++ +KLQ  +AK + ++ +         ++N +   I + +    ++K     
Sbjct: 120 KKVDELGKQVKKLQSDNAKEREKVALAQ------KEINGLQQSIQDKEITIDKMKKAGAD 173

Query: 816 LQKKIQSG 823
           L+ K+ S 
Sbjct: 174 LKDKLASA 181


>gi|317495333|ref|ZP_07953703.1| ATP-dependent chaperone ClpB [Gemella moribillum M424]
 gi|316914755|gb|EFV36231.1| ATP-dependent chaperone ClpB [Gemella moribillum M424]
          Length = 860

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 16/93 (17%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGR-VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
              +  +  +L+     L      V  R +E + EE   L+    K +LQ++ E      
Sbjct: 412 LDTINRKVMQLEIEEKALSSEDDEVSQRRLENLKEELANLKEEQNKLQLQVDSEKEKLSA 471

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +               K+L+  +D ++ +++  
Sbjct: 472 V---------------KDLREKIDRVKLELEQA 489


>gi|296483366|gb|DAA25481.1| transmembrane and coiled-coil domains 5B [Bos taurus]
          Length = 351

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 732 RSHLMGQDEKLKSLAS--FLKVSQ----GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
              +  ++E ++SL     L V Q      +  R  E     R L+L  AK +    +  
Sbjct: 50  LKKIQEKEETIQSLERDITLSVRQAREREELDHRTAEKEAALRDLELETAKLEKNKEILS 109

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            S  ++            +D + LK ++  L+ K+Q  
Sbjct: 110 RSVVEVQKEISRKFKNVGLDKEALKQMLAELKVKLQKS 147


>gi|255039305|ref|YP_003089926.1| signal transduction histidine kinase with CheB and CheR activity
           [Dyadobacter fermentans DSM 18053]
 gi|254952061|gb|ACT96761.1| signal transduction histidine kinase with CheB and CheR activity
           [Dyadobacter fermentans DSM 18053]
          Length = 1218

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              +E+L  + + L+ S      + EE+     +LQ I+ + +      + S  ++  +N
Sbjct: 653 RHLEEELIRVKAQLRTSNEQHEVQAEELKASNEELQAINEELRSAAEELETSKEELQSIN 712

Query: 796 --------FMSHIISEVD--SKELKSVMDA 815
                    +   + E+   S  L++++++
Sbjct: 713 EELTTINQELKVKVEEISLTSNNLQNLINS 742


>gi|241889237|ref|ZP_04776540.1| putative maebl [Gemella haemolysans ATCC 10379]
 gi|241864074|gb|EER68453.1| putative maebl [Gemella haemolysans ATCC 10379]
          Length = 1081

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  + EKL  LA+  K         VEE      K +    K K  L     +  + 
Sbjct: 632 VDDLAEKIEKLTELANQDKADATEKSKAVEEKTAALDKQKETLEKAKTALETAKKNNAEQ 691

Query: 792 ADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
           A  + +   ++++++     K+  D  Q K      ++     E          + L D 
Sbjct: 692 AIQDGLQDAVTKLEASVASAKTAADEAQAKFDEVNKVVKAYKDE---------IDKLTDD 742

Query: 850 FNA-VDLARLSAKVLGGGGGGGRP-HMAQSGGPNGN 883
           +NA ++      +V      G +P   A  GG N +
Sbjct: 743 YNATLEYINNLKEVPQ----GEKPKDFA--GGVNPS 772


>gi|218889995|ref|YP_002438859.1| hypothetical protein PLES_12531 [Pseudomonas aeruginosa LESB58]
 gi|218770218|emb|CAW25980.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 688

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 36/215 (16%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA--RSHLMGQDEKLKSLASFLKVSQGNV 756
           V+   E+ L  I  E ++    + I  +  +R      +  ++E++K +     VS+   
Sbjct: 328 VAREREVELQKIEKEKALEEQRKNIANVIRERVAVEKTVAQEEERIKEVRE---VSEAER 384

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           V +V  +  +    Q +  + K     E  S HK  ++N M+    E  SK+        
Sbjct: 385 VKQVILLQAQAEAEQELVRQVKQAEADEARSKHKAVEINTMAQAELEAASKQA-----EA 439

Query: 817 QKKIQSGIIM--LVGISKEKKASVLIVVTED----LLDRFNAVDLARLS----------A 860
           +K++  GI          + +   +    ++       R  A  L   +          A
Sbjct: 440 KKRLAEGIEAERAAPGLADARVLEVTAAAKEKDGLAAARVRAEQLIAEARGDEERGLADA 499

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           +VL           AQ+     +   +A       
Sbjct: 500 RVLE----------AQAAAKEKDGLAEAKVLAEKL 524


>gi|147857589|emb|CAN80995.1| hypothetical protein VITISV_041584 [Vitis vinifera]
          Length = 1238

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 22/113 (19%)

Query: 286 IADGIL--PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           I D +     NEGR YVLR I+RRA+ Y                     + +       A
Sbjct: 223 IHDYLTYSXDNEGREYVLRHILRRAVRYGS-----------------EVLKAQEGFFNSA 265

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
                  +  E+  FGKTL +G+         +    +      ++L++    
Sbjct: 266 HQF---IIAEEEASFGKTLLKGIEKFKKAAHEVQGKILNGQANIYRLFEETNF 315


>gi|119629686|gb|EAX09281.1| pericentrin (kendrin), isoform CRA_e [Homo sapiens]
          Length = 3325

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK 790
               L  ++  LK + +        +   +E + E  ++LQ   A+   QL  V +   H+
Sbjct: 1683 LRELEEENTSLKVIYTR-SSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHE 1741

Query: 791  IADVNFMSHIISEVDSKELKS 811
            ++ +  + H +S+  +  L+S
Sbjct: 1742 LSLMGPVVHEVSDSQAGSLQS 1762


>gi|119629684|gb|EAX09279.1| pericentrin (kendrin), isoform CRA_c [Homo sapiens]
          Length = 3139

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK 790
               L  ++  LK + +        +   +E + E  ++LQ   A+   QL  V +   H+
Sbjct: 1576 LRELEEENTSLKVIYTR-SSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHE 1634

Query: 791  IADVNFMSHIISEVDSKELKS 811
            ++ +  + H +S+  +  L+S
Sbjct: 1635 LSLMGPVVHEVSDSQAGSLQS 1655


>gi|119629682|gb|EAX09277.1| pericentrin (kendrin), isoform CRA_a [Homo sapiens]
          Length = 3246

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK 790
               L  ++  LK + +        +   +E + E  ++LQ   A+   QL  V +   H+
Sbjct: 1683 LRELEEENTSLKVIYTR-SSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHE 1741

Query: 791  IADVNFMSHIISEVDSKELKS 811
            ++ +  + H +S+  +  L+S
Sbjct: 1742 LSLMGPVVHEVSDSQAGSLQS 1762


>gi|119629683|gb|EAX09278.1| pericentrin (kendrin), isoform CRA_b [Homo sapiens]
          Length = 1901

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK 790
              L  ++  LK + +        +   +E + E  ++LQ   A+   QL  V +   H+
Sbjct: 259 LRELEEENTSLKVIYTR-SSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHE 317

Query: 791 IADVNFMSHIISEVDSKELKS 811
           ++ +  + H +S+  +  L+S
Sbjct: 318 LSLMGPVVHEVSDSQAGSLQS 338


>gi|119586097|gb|EAW65693.1| ninein (GSK3B interacting protein), isoform CRA_b [Homo sapiens]
          Length = 2095

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1409 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1468

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1469 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1528

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1529 AVQKMVENLKKQISE 1543


>gi|119586102|gb|EAW65698.1| ninein (GSK3B interacting protein), isoform CRA_g [Homo sapiens]
          Length = 2077

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1391 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1450

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1451 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1510

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1511 AVQKMVENLKKQISE 1525


>gi|31296687|gb|AAP46636.1|AF515282_1 pericentrin B [Homo sapiens]
 gi|119629685|gb|EAX09280.1| pericentrin (kendrin), isoform CRA_d [Homo sapiens]
          Length = 3336

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK 790
               L  ++  LK + +        +   +E + E  ++LQ   A+   QL  V +   H+
Sbjct: 1694 LRELEEENTSLKVIYTR-SSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHE 1752

Query: 791  IADVNFMSHIISEVDSKELKS 811
            ++ +  + H +S+  +  L+S
Sbjct: 1753 LSLMGPVVHEVSDSQAGSLQS 1773


>gi|81295809|ref|NP_006022.3| pericentrin [Homo sapiens]
 gi|313104312|sp|O95613|PCNT_HUMAN RecName: Full=Pericentrin; AltName: Full=Kendrin; AltName:
            Full=Pericentrin-B
          Length = 3336

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK 790
               L  ++  LK + +        +   +E + E  ++LQ   A+   QL  V +   H+
Sbjct: 1694 LRELEEENTSLKVIYTR-SSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHE 1752

Query: 791  IADVNFMSHIISEVDSKELKS 811
            ++ +  + H +S+  +  L+S
Sbjct: 1753 LSLMGPVVHEVSDSQAGSLQS 1773


>gi|1850913|gb|AAB48065.1| myosin heavy chain [Entamoeba histolytica]
          Length = 2139

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             +A      Q+ +L++    LK    ++  ++E    E +KL+    + +   +  D + 
Sbjct: 1578 NKALEMKGVQNNQLQATNKELKAKDNDLTSKIEITENEMKKLENAKKRLEQDKDEADKAV 1637

Query: 789  HK 790
             +
Sbjct: 1638 SE 1639


>gi|4204829|gb|AAD10838.1| kendrin [Homo sapiens]
          Length = 3321

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK 790
               L  ++  LK + +        +   +E + E  ++LQ   A+   QL  V +   H+
Sbjct: 1683 LRELEEENTSLKVIYTR-SSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHE 1741

Query: 791  IADVNFMSHIISEVDSKELKS 811
            ++ +  + H +S+  +  L+S
Sbjct: 1742 LSLMGPVVHEVSDSQAGSLQS 1762


>gi|34328010|dbj|BAA23698.3| KIAA0402 [Homo sapiens]
          Length = 3284

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK 790
               L  ++  LK + +        +   +E + E  ++LQ   A+   QL  V +   H+
Sbjct: 1721 LRELEEENTSLKVIYTR-SSEIEELKATIENLQENQKRLQKEKAEEIEQLHEVIEKLQHE 1779

Query: 791  IADVNFMSHIISEVDSKELKS 811
            ++ +  + H +S+  +  L+S
Sbjct: 1780 LSLMGPVVHEVSDSQAGSLQS 1800


>gi|42559342|sp|O96064|MYSP_MYTGA RecName: Full=Paramyosin
 gi|4115774|dbj|BAA36517.1| paramyosin [Mytilus galloprovincialis]
          Length = 864

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-- 790
             LM + E+L+ +   L +    +    E++      L+    K  +++    +      
Sbjct: 302 KELMAKQEELEEIRRRLSIKIQELEDTCEQLRTRCNTLEKTKNKLTVEIREITIELENTQ 361

Query: 791 --IADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             + D+   +  +   ++  L+   D L  +  
Sbjct: 362 IIVQDLTKRNRQLENENA-ALQKRCDDLSAENG 393


>gi|11072106|ref|NP_067695.1| nucleobindin-2 precursor [Rattus norvegicus]
 gi|17367404|sp|Q9JI85|NUCB2_RAT RecName: Full=Nucleobindin-2; AltName: Full=DNA-binding protein
           NEFA; Flags: Precursor
 gi|8515422|gb|AAF75993.1|AF250142_1 NEFA precursor [Rattus norvegicus]
 gi|38197372|gb|AAH61778.1| Nucleobindin 2 [Rattus norvegicus]
          Length = 420

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +E+LK   S + + +  +  + +E+ ++  +LQ  H   + Q      +  ++    F  
Sbjct: 344 EEELKEYESIIAIQESELKKKADELQKQKEELQRQHDHLEAQKQEYQQAVQQLEQKKFQQ 403

Query: 799 HIISEVDSKELK 810
            I     + ELK
Sbjct: 404 GIAPSGPAGELK 415


>gi|224051470|ref|XP_002199906.1| PREDICTED: melanoma inhibitory activity 2 [Taeniopygia guttata]
          Length = 1545

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 46/131 (35%), Gaps = 18/131 (13%)

Query: 692  ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
                G H+    +  +  ++  + + A ++ +EA            +D+    L    K 
Sbjct: 1041 ETENGEHLDDEQKRTVKKLIYAAKLNACLKTMEA-----------ERDQMYSKLCDENKA 1089

Query: 752  SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
              G +  R+E +  +   LQ  +   + ++               M+ +  E + K  + 
Sbjct: 1090 K-GELTERIENLQSQQASLQSENEHFESEVQKLQQKL------KVMTELYQENEMKLHRK 1142

Query: 812  VMDALQKKIQS 822
            +    ++++Q 
Sbjct: 1143 LTVEERERLQK 1153


>gi|17553272|ref|NP_497935.1| SMC (structural maintenance of chromosomes) family member (smc-4)
           [Caenorhabditis elegans]
 gi|29427679|sp|Q20060|SMC4_CAEEL RecName: Full=Structural maintenance of chromosomes protein 4;
           Short=SMC protein 4; Short=SMC-4
 gi|3876724|emb|CAA86336.1| C. elegans protein F35G12.8, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1549

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++A   +    E+++ L    K +       ++E  +     +    K +     +    
Sbjct: 439 EKAERKIAKCQEEVEQLLEIEKTANEEADKNLDEFEKRSEAPKEEQKKIQETWAQKSNEF 498

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +K+         I+  D ++LK + ++   K+
Sbjct: 499 NKVRG----EARIAREDFEDLKKLANSGTDKL 526


>gi|83316022|ref|XP_731045.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490960|gb|EAA22610.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 1409

 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 21/158 (13%)

Query: 713  ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
            E+    G+  I+  T       +    +    L    K     V  + E   ++  K   
Sbjct: 959  ENKANKGVETIKEKTENAIDQVVKVVKDGADKLEKEAKKGVEAVKEKSENAVDKVTKAAK 1018

Query: 773  IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             +  +  +   + +   K+   N +  +     +K  K   D L+K+ Q G+  +     
Sbjct: 1019 DNEDKLKKEAKKGIESVKVKTENAVDKV-----TKVAKDNGDKLKKEAQKGVEAV----- 1068

Query: 833  EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG--GGG 868
              K       TE+ +D+  AV + +  A  L      G
Sbjct: 1069 --KVK-----TENAVDK--AVKVVKDGANKLENETKKG 1097


>gi|332017228|gb|EGI58011.1| hypothetical protein G5I_13917 [Acromyrmex echinatior]
          Length = 597

 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 30/293 (10%), Positives = 86/293 (29%), Gaps = 28/293 (9%)

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           + ++      V    + + + +         + + R Q+       +    +L   +   
Sbjct: 189 EYEQLKHQYDVETNAMHKAMQQASQWYRQNRELKRRSQIMAQKFLHNNPDESLHLDISDE 248

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V  N   +            +                   + +  +T  +  E  +   +
Sbjct: 249 VDSNFEDLDHLRQTVKELSGEIARLQTELHSARLQEFEAQEQVTQLTTQLEEERVLRQKS 308

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR-- 722
              +      +  +  +         +     T      E   +  +    ++    R  
Sbjct: 309 EEKINEMKVHKENMERITKMVAEEVQTLK---TQCDRERESAKMLQLEAERVQK--ERNI 363

Query: 723 -------IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--- 772
                  + A  G      L+   ++++SL   L+  Q N   +++ + E+  + +    
Sbjct: 364 LAHQSALLMAGVGDDPNGRLLTVLQEVESLKRLLEEEQQNHASQIQMLQEKLEEKESNVE 423

Query: 773 -IHAKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQKKIQS 822
               + KL+L   +L          +       E   +EL++++  L++KI+ 
Sbjct: 424 FEIVEEKLKLAESELE--------VVVQRAERAEKSMEELENIVHCLKQKIRE 468


>gi|331252460|ref|XP_003338782.1| hypothetical protein PGTG_20319 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309317772|gb|EFP94363.1| hypothetical protein PGTG_20319 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 243

 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 19/112 (16%)

Query: 728 GQRARSHL---MGQDEKLKSLASFLKVSQGNVV------------GRV--EEIWEEYRKL 770
           G+ A+         DE L       +VSQ  +              ++  E++  E +KL
Sbjct: 126 GKAAKRRQIKNYQHDELLSQTNELAEVSQEQLTAFNKGNNILLEKNKIMQEKLEIERKKL 185

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           QL   K  ++ +        +     +     +++ KE K V+  ++ +I++
Sbjct: 186 QLEEEKIAIEKDYCQSETE-MNGFKILCD-AEDLEEKEAKDVLKIIKDQIKN 235


>gi|308235406|ref|ZP_07666143.1| hypothetical protein GvagA14_04145 [Gardnerella vaginalis ATCC
           14018]
          Length = 664

 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 1/92 (1%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI- 791
                     +   S L+        + E    E  KL+    +++      D     I 
Sbjct: 234 EETAEDLANEEEAKSKLEAELAEAKQKSESTKVEAEKLEKEAQQKEAAAEGVDNKIENIT 293

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             +      +  +D+   ++ ++ L++K+ S 
Sbjct: 294 KQIKTAEENLKTLDADNDQNKINQLKEKVAST 325


>gi|297271835|ref|XP_002808158.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 2, axonemal-like
            [Macaca mulatta]
          Length = 4596

 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 62/172 (36%), Gaps = 2/172 (1%)

Query: 622  THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
            +    +   + +++ DN    + + LP +   M   +++       + +      +V  V
Sbjct: 3289 SEKIAVEEIKCQALADNAQKDLEEALPALEEAMRALESLNKKDIGEIKSYGRPPAQVEIV 3348

Query: 682  EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH-LMGQDE 740
                  +  +           G++  +  +  +     IR   A+   R +   L    E
Sbjct: 3349 MQAVMILRGNEPTWAEAKRQLGKLETMKXMISARPPKRIRMNAALAQLREKQAALAEAQE 3408

Query: 741  KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCHKI 791
            KL+ +A  L++ +     ++ +  E  +K + +  K +   + V  L+  K 
Sbjct: 3409 KLREVAEKLEMLKKQYDEKLAQKEELRKKSEEMELKLERAGMLVSGLAGEKA 3460


>gi|300088066|ref|YP_003758588.1| peptide chain release factor 1 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527799|gb|ADJ26267.1| peptide chain release factor 1 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 356

 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 4/94 (4%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +EA+ G          ++ L      L+          E   EE ++L+    +   QL 
Sbjct: 41  MEALIGM--YRRYKRNEQSLTEAEQMLETETDE--EMRELAKEEVKRLKQEQEELYEQLK 96

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           +  L     A+ N +  I +     E K     L
Sbjct: 97  IALLPKDPNAERNIIIEIRAGTGGDEAKLFAGDL 130


>gi|193216776|ref|YP_002000018.1| massive surface protein MspD [Mycoplasma arthritidis 158L3-1]
 gi|193002099|gb|ACF07314.1| massive surface protein MspD [Mycoplasma arthritidis 158L3-1]
          Length = 2592

 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 40/132 (30%), Gaps = 27/132 (20%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-----------QLIHAKRKLQ 780
                 + + L      ++     +  +++ I +E +K            +L   +  L+
Sbjct: 832 IDDKKDKYKTLDETIKNIEKDIKKLEEKIKGIKDENKKQNTETKIKDLVEKLEETRADLK 891

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
               +L      +   +  ++ + D    K + D            +     + K S   
Sbjct: 892 NKQTELETEVAKNNTEVQKLLEDADKA--KKLADE----------AIADPKDDNKVS--- 936

Query: 841 VVTEDLLDRFNA 852
              ++ LD+  A
Sbjct: 937 -SAKEALDKSKA 947


>gi|123123548|emb|CAM16866.1| centrosomal protein 110 [Mus musculus]
 gi|123232828|emb|CAM17903.1| centrosomal protein 110 [Mus musculus]
          Length = 2316

 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 53/165 (32%), Gaps = 5/165 (3%)

Query: 652  RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                  +       AL   K  +         E             H +   ++      
Sbjct: 860  EEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHY 919

Query: 712  SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW---EEYR 768
             + ++++ + +I+ +T  + +     ++  L  L    K  +       E+     EE +
Sbjct: 920  LQENLKS-MEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELK 978

Query: 769  KLQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
             L+   A   KL      ++  ++  ++     I++  ++EL+  
Sbjct: 979  SLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEA 1023


>gi|154416466|ref|XP_001581255.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121915481|gb|EAY20269.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 1150

 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 740 EKLKSLASFLKVSQGNVVGR-VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIADVNFM 797
           +KLK+    LK    +   R +E +  E R+L+   A    +  +        + +   +
Sbjct: 661 QKLKAENEELKAEMESKQNRSLERLRNENRQLKQEIADLDSKYQLSQSQLQSTVKENAGL 720

Query: 798 SHIISEVDSKELKSV---MDALQKKI 820
              I +++ + +++V   +D L+ + 
Sbjct: 721 KQEIEDLEDQSMQNVSKEIDRLKNEN 746


>gi|29135098|ref|NP_803728.1| ORF162 [Pseudomonas phage phiKZ]
 gi|18996627|gb|AAL83063.1|AF399011_162 PHIKZ162 [Pseudomonas phage phiKZ]
          Length = 522

 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 21/144 (14%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL--------- 781
           A   +      +      ++ +  N + RV +I +  ++ +L    R + +         
Sbjct: 274 ALDFIKKLIRIVVETYQRIRQNVSNQIERVNKIMKRVKENELPDEVRTIAIPRDLILGDT 333

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
               +    +  V  + ++   ++   L+++              L G + + KA  L  
Sbjct: 334 GESWVGVDPVQGVTVIRNLFDSIEKNGLRAL-----------KAALAGKTTDDKALALAK 382

Query: 842 VTEDLLDRFNAVDLARLSAKVLGG 865
                  + NA    R ++ V+ G
Sbjct: 383 GMFGTATKINANG-VRYASPVVPG 405


>gi|119586103|gb|EAW65699.1| ninein (GSK3B interacting protein), isoform CRA_h [Homo sapiens]
          Length = 2139

 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1453 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1512

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1513 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1572

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1573 AVQKMVENLKKQISE 1587


>gi|322709513|gb|EFZ01089.1| Golgi membrane protein (Coy1), putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 736

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 722 RIEAIT--GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLIHAKR 777
           RIE+ T  G      L+ +++KL    + L+VS  ++  R+E++ EE      +L  ++ 
Sbjct: 399 RIESSTDKGDSLEKLLLSRNKKLGDELTVLRVSHQDLQSRLEDLQEELSRTNAELEKSQN 458

Query: 778 KLQLNVEDLSCHKIADVN 795
             Q   EDL   +    N
Sbjct: 459 LNQKLEEDLEHMQAEGAN 476


>gi|301607117|ref|XP_002933140.1| PREDICTED: laminin subunit beta-1-like [Xenopus (Silurana)
            tropicalis]
          Length = 1782

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 76/220 (34%), Gaps = 32/220 (14%)

Query: 679  VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
            ++ + +DG         G  V+            ++ I+  +  +E ++   A S L  +
Sbjct: 1410 LNCKTDDGKRKCGGPGCGGLVTVAHSAWKTASSFDTEIQNALAEVEELSKMVAESKLRAE 1469

Query: 739  DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
            +   K  A  +         +V +  E+ R L     +  +Q   +  S   +A    + 
Sbjct: 1470 EA--KQSAQDVLTKANATKEKVNQSNEDLRNLIKQIREFLMQDGADLDSIEAVAS-EVLK 1526

Query: 799  HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
              +     ++L+ + + ++++++S    L G+              D + + +A D+AR 
Sbjct: 1527 MDMPST-PEQLQKLTEEIRERVES----LSGV--------------DTILKQSAGDIARA 1567

Query: 859  SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             A +            A+    +       +  V   L +
Sbjct: 1568 EALL----------DEAKESSKSAADIKATVDAVKEALME 1597


>gi|296139304|ref|YP_003646547.1| chromosome segregation protein SMC [Tsukamurella paurometabola DSM
           20162]
 gi|296027438|gb|ADG78208.1| chromosome segregation protein SMC [Tsukamurella paurometabola DSM
           20162]
          Length = 1194

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            RVEE+    R  +   A    ++    L+  +     ++   I  V +   + +   ++
Sbjct: 464 ARVEELQAAERAAEQKVASLMARIEALTLNLDRGDGAAWVVEHIDGVTAAVAERL--QIR 521

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
              +  +   +G   E  A+  + V    L R    D  R +A V+ G  G   P     
Sbjct: 522 AGYEKAVAAALGPVAEAVAAPSVSVASAALARLREADGGR-AALVVEGLSGPSAP----- 575

Query: 878 GGPNGNKADQAIAGVAS 894
           GG   + A  A+  V +
Sbjct: 576 GGSLPDGAVWAVDAVTA 592


>gi|224541749|ref|ZP_03682288.1| hypothetical protein CATMIT_00921 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525353|gb|EEF94458.1| hypothetical protein CATMIT_00921 [Catenibacterium mitsuokai DSM
           15897]
          Length = 862

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            +       L   T   +  E+  + I  E S     +R+E       +  +   +EK+ 
Sbjct: 412 MEIDSMPEELDTITRDKNRLEMERISIEKEDSTEDNEKRLE-----EIKEKIASLNEKIA 466

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
            L    K  +  V   ++++  +  +L+   A+ + Q N+E+ S  K   +  ++  I +
Sbjct: 467 GLTEQWKSEKSQV-DHIKDLKNQKVRLETQMAQFESQGNLEEASKIKYQTIPAINKEIED 525

Query: 804 VDSKE 808
             +KE
Sbjct: 526 YQAKE 530


>gi|222100268|ref|YP_002534836.1| MutS2 protein [Thermotoga neapolitana DSM 4359]
 gi|254766608|sp|B9K937|MUTS2_THENN RecName: Full=MutS2 protein
 gi|221572658|gb|ACM23470.1| MutS2 protein [Thermotoga neapolitana DSM 4359]
          Length = 757

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             +     +L      L+    ++  ++  + EE RKLQ    +  ++L  +    +K  
Sbjct: 489 RIIENARSRLSQEEMELEGLIRSLHEKISLLEEEKRKLQKEKEEY-MKLRAKYEEDYK-- 545

Query: 793 DVNFMSHIISEVDSKELKSVMD---ALQKKIQSGIIMLVGISKEK 834
                   I E D KELK + D    ++K++   I +    S E+
Sbjct: 546 --KLRRMKIEEFD-KELKELNDYIRKVKKELDQAIHVAKSGSVEE 587


>gi|213401677|ref|XP_002171611.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
 gi|211999658|gb|EEB05318.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 472

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 22/152 (14%)

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                     H ++  E+      ++    A  ++IEA  G           EK K L +
Sbjct: 4   HKPVRPDETAHKAAVAELEKKIEAADKVFNAVKQKIEASRGPNPF------HEKNKELRA 57

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIH-AKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            L         ++ E     R  +    A+ K +   ED    KI ++N +   +     
Sbjct: 58  EL--------DKIREAQSAIRSSKQEIIAQLKGK---EDALKKKINEINGLKKTVPFKSE 106

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            +L   ++ L+ +++SG + LV    ++K ++
Sbjct: 107 ADLDKRIERLRSEVESGTMKLV----DEKKNL 134


>gi|171769754|sp|A2AL36|CE110_MOUSE RecName: Full=Centriolin; AltName: Full=Centrosomal protein 1;
            AltName: Full=Centrosomal protein of 110 kDa;
            Short=Cep110
          Length = 2334

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 53/165 (32%), Gaps = 5/165 (3%)

Query: 652  RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                  +       AL   K  +         E             H +   ++      
Sbjct: 860  EEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHY 919

Query: 712  SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW---EEYR 768
             + ++++ + +I+ +T  + +     ++  L  L    K  +       E+     EE +
Sbjct: 920  LQENLKS-MEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELK 978

Query: 769  KLQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
             L+   A   KL      ++  ++  ++     I++  ++EL+  
Sbjct: 979  SLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEA 1023


>gi|26353812|dbj|BAC40536.1| unnamed protein product [Mus musculus]
          Length = 987

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 53/165 (32%), Gaps = 5/165 (3%)

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                 +       AL   K  +         E             H +   ++      
Sbjct: 307 EEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHY 366

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW---EEYR 768
            + ++++ + +I+ +T  + +     ++  L  L    K  +       E+     EE +
Sbjct: 367 LQENLKS-MEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELK 425

Query: 769 KLQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
            L+   A   KL      ++  ++  ++     I++  ++EL+  
Sbjct: 426 SLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEA 470


>gi|331703029|ref|YP_004399716.1| ribose/galactose ABC transporter permease I [Mycoplasma mycoides
           subsp. capri LC str. 95010]
 gi|328801584|emb|CBW53737.1| Ribose/Galactose ABC transporter, permease component I [Mycoplasma
           mycoides subsp. capri LC str. 95010]
          Length = 855

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 5/64 (7%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 732 RSHLMGQDEKLKSLASFLKV----SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
             ++  +    K +++  K     ++  ++ +++++ E+ + ++     + L+   +  +
Sbjct: 577 IKNIKSELRLEKQISNLNKSSTQINKAKIIEKIKQLQEQIKVIKKQANAKILEQKNKYKN 636

Query: 788 CHKI 791
              I
Sbjct: 637 QKNI 640


>gi|328555289|gb|AEB25781.1| hypothetical protein BAMTA208_18145 [Bacillus amyloliquefaciens
           TA208]
          Length = 241

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
            + L   ++ LK     LK SQ  +    E +  E + L+    + K   N E   
Sbjct: 121 INELKKTNKSLKQDNEKLKDSQKKLEKAAETLQSENKTLKRQKEETKTAGNAESAQ 176


>gi|242308874|ref|ZP_04808029.1| predicted protein [Helicobacter pullorum MIT 98-5489]
 gi|239524538|gb|EEQ64404.1| predicted protein [Helicobacter pullorum MIT 98-5489]
          Length = 219

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 5/58 (8%), Positives = 22/58 (37%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
                + E L      L  +   +  +   +  + ++L++ + + + Q+  ++    +
Sbjct: 32  KQFEEEYEILSQQREALIKNSNEISAKNALLLSQNKELEIKNKELEAQIAQKNKIIQE 89


>gi|167517907|ref|XP_001743294.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778393|gb|EDQ92008.1| predicted protein [Monosiga brevicollis MX1]
          Length = 940

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 22/73 (30%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
            R    +TGQ   + L   +  +  L   L   +         + ++ R+ +L   +   
Sbjct: 826 NRPFYFVTGQEHETQLANLNNDITELQRVLDAERTEHAEVKTSLMDQLRQSRLKQEQLNA 885

Query: 780 QLNVEDLSCHKIA 792
            L        +  
Sbjct: 886 ALQDAGTELQEAE 898


>gi|145508489|ref|XP_001440194.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407400|emb|CAK72797.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2301

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                  + +++KS+   L      +  +++   EE   L   + +   Q N E      I
Sbjct: 930  IELYKKEIQQVKSINDQLSTQIAELRIQLQTNQEEQITL-TENEQIIQQQNKEIQFLKTI 988

Query: 792  ADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +   +     +   + LK   D L+ K ++ II
Sbjct: 989  NNEKQIQISQQDYQLQNLKEQFDHLKSKSKNLII 1022


>gi|110679772|ref|YP_682779.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Roseobacter denitrificans OCh 114]
 gi|109455888|gb|ABG32093.1| single-stranded-DNA-specific exonuclease RecJ, putative
           [Roseobacter denitrificans OCh 114]
          Length = 579

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 12/143 (8%)

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +  R++++  E R ++       L             D   +    ++     +  V   
Sbjct: 323 LAERLDKLNTERRDIEAAVRATALAQAEARGL-----DRPLVWAAGADWHPGVVGIVASR 377

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           L++      I++       K S   V   DL    +     RL+A+ L   GGG +  MA
Sbjct: 378 LKEAAGRPSIVIGITDGIGKGSGRSVAGIDLGQPIH-----RLAAEGLLLKGGGHK--MA 430

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
                  +K + A+A ++  L+K
Sbjct: 431 AGLTVEESKIEPAMARLSELLEK 453


>gi|57112869|ref|XP_538200.1| PREDICTED: similar to B-cell receptor-associated protein 31
           (BCR-associated protein Bap31) (p28 Bap31) (CDM protein)
           (6C6-AG tumor-associated antigen) (DXS1357E) [Canis
           familiaris]
          Length = 246

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASF-LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
             + A+ ++   D+  K  A+  +K+   +   +VE   EE R L+    K K +L++  
Sbjct: 143 ASEAAKKYMEENDQLKKEAAAGGVKLDGKDAEEKVE---EENRSLKADLKKLKDELDINK 199

Query: 786 LSCHKIA 792
               K  
Sbjct: 200 QKLEKAE 206


>gi|325088080|gb|EGC41390.1| predicted protein [Ajellomyces capsulatus H88]
          Length = 412

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 19/109 (17%)

Query: 732 RSHLMGQDEKLKSLASF---LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
                 ++ +LK L       K S  +++ +  E  ++ ++ +    K K    +  L  
Sbjct: 284 IDRYRDENSQLKELKKKYDGFKESLEDILKKRNEKQKQLKE-ENEAQKLKQLEQISQLKA 342

Query: 789 HKIADVNFMSHIISEVDS--------------KELKSVMDALQKKIQSG 823
                +   +  +   D               K ++ + D L+ ++ SG
Sbjct: 343 E-FDKIRGGASKVIHPDMWKSGGMDAAAVQAAKIMEQMEDTLKAEVPSG 390


>gi|240281939|gb|EER45442.1| predicted protein [Ajellomyces capsulatus H143]
          Length = 383

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 19/109 (17%)

Query: 732 RSHLMGQDEKLKSLASF---LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
                 ++ +LK L       K S  +++ +  E  ++ ++ +    K K    +  L  
Sbjct: 255 IDRYRDENSQLKELKKKYDGFKESLEDILKKRNEKQKQLKE-ENEAQKLKQLEQISQLKA 313

Query: 789 HKIADVNFMSHIISEVDS--------------KELKSVMDALQKKIQSG 823
                +   +  +   D               K ++ + D L+ ++ SG
Sbjct: 314 E-FDKIRGGASKVIHPDMWKSGGMDAAAVQAAKIMEQMEDTLKAEVPSG 361


>gi|148536869|ref|NP_065972.3| ninein isoform 2 [Homo sapiens]
          Length = 2133

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1447 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1506

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1507 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1566

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1567 AVQKMVENLKKQISE 1581


>gi|157117211|ref|XP_001652989.1| calmin [Aedes aegypti]
 gi|108876133|gb|EAT40358.1| calmin [Aedes aegypti]
          Length = 11328

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 42/102 (41%), Gaps = 9/102 (8%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             +L   +  +++    ++ S  NV    +E  E  ++L+ I    + +   ++L  + + 
Sbjct: 4558 EYLQKANAWIENAKEIVRFSTDNVENASKENLE--KRLEKIIELIQQRDQAQNLVNNTVN 4615

Query: 793  -DVNFMS------HIISEVDSKELKSVMDALQKKIQSGIIML 827
                 +         +   + KE+++  D L KK+ +  + L
Sbjct: 4616 TGEKVVKNTKSDGKEVINTELKEIQTNWDRLVKKMSNAKVCL 4657


>gi|91079616|ref|XP_967067.1| PREDICTED: similar to slender lobes, putative [Tribolium castaneum]
 gi|270003380|gb|EEZ99827.1| hypothetical protein TcasGA2_TC002608 [Tribolium castaneum]
          Length = 1231

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + +   L+   ++LK   + LK     +      I +E +KL  +  K K  L   +   
Sbjct: 526 KASYEELLRDYDELKKTNNLLKNELETLQQSNISINDENQKLNSMFEKVKSDLENAEYQY 585

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            ++            V+++ L+  +D+ +KK +  I
Sbjct: 586 IEMN-----------VNTESLREEIDSYKKKNEELI 610


>gi|63100311|gb|AAH94764.1| TPR protein [Homo sapiens]
          Length = 692

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              ++ L K ++  
Sbjct: 304 TRAVEELHKLLKEA 317


>gi|38328190|gb|AAH62166.1| Filip1l protein [Mus musculus]
          Length = 958

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 28/224 (12%)

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  + +    +  I ++ +    G + ++      R RV+ +E +D  +         
Sbjct: 164 ETNRSLRKAEEELQDIKDKINKGEYGNSGIMDEVDELRKRVLDMEGKDEELIKMEEQCRD 223

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--- 754
                 +  +     +  +     RI       A   L    +K K     LK +     
Sbjct: 224 LNKRLEKETVQSKDFKLEVDKLSVRIT------ALEKLEDALDKSKQECYSLKCNLEKEK 277

Query: 755 ----NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                +   +E +    ++L+ I ++ +           K+  +  M          E K
Sbjct: 278 MTTKQLSEELESLNARIKELEAIESRLEKTEITLKDDLTKLKTLTVMLV-------DERK 330

Query: 811 SVMDALQ---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           ++ + L+    K+QS    L   +++ K +    VTE L++   
Sbjct: 331 TMSEKLKQTEDKLQSTTSQL--QAEQNKVT---TVTEKLIEETK 369


>gi|21930292|gb|AAF23015.2| ninein [Homo sapiens]
          Length = 2096

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1453 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1512

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1513 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1572

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1573 AVQKMVENLKKQISE 1587


>gi|332023145|gb|EGI63401.1| Afadin- and alpha-actinin-binding protein [Acromyrmex echinatior]
          Length = 244

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 1/103 (0%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV    E +              RR+     + A  +L  + ++++ L   ++  +    
Sbjct: 97  HVKRLKEDIQKKEHMICKAEERERRLNVKC-EDASRNLKQERDEIRKLKKQIQFKETQHE 155

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
             +  I +  +KLQ    K       +D    KI +   +S+ 
Sbjct: 156 HEIRRITQSSQKLQEQLQKSAGSFTPKDKLLQKIHEKELISYK 198


>gi|328780007|ref|XP_001120388.2| PREDICTED: major antigen [Apis mellifera]
          Length = 2026

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 44/108 (40%), Gaps = 13/108 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            R +  L    +++  L S +   +  +   V  +E++  E + L+      + + +   
Sbjct: 807 NRLKQELESGRKEIDQLKSEIGSMKDALGKCVDEIEKLKTENKDLKSEVQGLESERDRLT 866

Query: 786 LSCHKIA-DVNFMSHIISEVDSK---------ELKSVMDALQKKIQSG 823
                +   ++ +   +++   K         +L++ +D L+K+++S 
Sbjct: 867 NEVADLKPKISELQEKLTDASKKLDEAKTEDSDLRAEVDRLKKELESA 914


>gi|297266033|ref|XP_002808087.1| PREDICTED: LOW QUALITY PROTEIN: girdin-like [Macaca mulatta]
          Length = 1960

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K  L+  
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSF 682

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 683 KNLTFQLESLEKENSQLDEENL-ELRRNVESLK 714


>gi|289618615|emb|CBI54859.1| unnamed protein product [Sordaria macrospora]
          Length = 1131

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRK 769
           +  +    +RIE +  QR         E++++L   LK      V    R++E+ +E ++
Sbjct: 567 QEELADKDQRIERLAKQR--KTEEDLREEIENLQDSLKEIGFEHVETKQRLKELEQEKKE 624

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           L+    + + +++    +     +    S        + L+   D L++K
Sbjct: 625 LKARIDELEKEVDAAASAAQT--NTKLQSEH------ESLRQEFDDLKQK 666


>gi|219128540|ref|XP_002184469.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404270|gb|EEC44218.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 328

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           +  + A      + +  K+    LK        +V++     + L+        +  +E 
Sbjct: 242 VAKKNAERKAKEEAKIRKTNLDALKKQISKQDEKVKKAQTNLKALEKELRSLNSRKTIEK 301

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                      ++   ++++++  KS++  L+ K
Sbjct: 302 QEVK-------IAQAKTKLEAE--KSILKELKAK 326


>gi|182419430|ref|ZP_02950682.1| chaperonin GroL [Clostridium butyricum 5521]
 gi|237666853|ref|ZP_04526838.1| chaperonin GroL [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376761|gb|EDT74333.1| chaperonin GroL [Clostridium butyricum 5521]
 gi|237658052|gb|EEP55607.1| chaperonin GroL [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 542

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K +   +  RV +I  +  +      K KLQ  +  L+   +A +   +   +E+  K+L
Sbjct: 334 KGNSAEIKERVNQIRAQIEETSSEFDKEKLQERLAKLAGG-VAVIKVGAATETELKEKKL 392

Query: 810 K--SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
           +    ++A +  ++ GI+   G +     + +  +T D+ D
Sbjct: 393 RIEDALNATKAAVEEGIVAGGGTAYVNVINEVAKLTSDVQD 433


>gi|154414156|ref|XP_001580106.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121914320|gb|EAY19120.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2870

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 736 MGQDEKLKSLA---SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             +D+++K L      +K  Q  V  + +   ++ +KL     K + +     L+     
Sbjct: 555 NDKDQQIKELMNQIKLIKDKQDEVESKNKAKDQQMKKLIKELEKEQKKNKDLTLTIANAE 614

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           D   +   +      +L+S +  L+++IQ
Sbjct: 615 DPKHIQTQMQAR-IDDLQSEISNLKQEIQ 642


>gi|119586100|gb|EAW65696.1| ninein (GSK3B interacting protein), isoform CRA_e [Homo sapiens]
          Length = 2052

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1409 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1468

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1469 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1528

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1529 AVQKMVENLKKQISE 1543


>gi|114657034|ref|XP_510411.2| PREDICTED: myosin VC [Pan troglodytes]
          Length = 1843

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 9/221 (4%)

Query: 608  NGSCITPDGLRFDVTH--SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
             G  +        +     +  T   L            + + +              + 
Sbjct: 920  RGYLVRSLYQLIRMATITMQAYTRGFLARRRYRKMLEEHKAVILQKYARAWLARRRFQSI 979

Query: 666  ALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLL-YIVSESSIRAG 719
                       RV  +     +                    G++  +  + +E    A 
Sbjct: 980  RRFVLNIQLTYRVQRLQKKLEDQNKENHGLVEKLTSLAALRAGDVEKIQKLEAELEKAAT 1039

Query: 720  IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
             RR     G+R R  +  +  KL+   S L+  +  +  +++E  EE ++      K+  
Sbjct: 1040 HRRNYEEKGKRYRDAVEEKLAKLQKHNSELETQKEQIQLKLQEKTEELKEKMDNLTKQLF 1099

Query: 780  QLNVEDLSCHKIADVNF-MSHIISEVDSKELKSVMDALQKK 819
                ++     + + +F +     E   + LK  + AL+ +
Sbjct: 1100 DDVQKEERQRMLLEKSFELKTQDYEKQIQSLKEEIKALKDE 1140


>gi|73669842|ref|YP_305857.1| hypothetical protein Mbar_A2356 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397004|gb|AAZ71277.1| hypothetical protein Mbar_A2356 [Methanosarcina barkeri str.
           Fusaro]
          Length = 261

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/65 (12%), Positives = 26/65 (40%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  + ++       LK  + ++   V+ + +E  +++    +   ++   D+   ++
Sbjct: 197 LQQLNREKDEFGKKMEELKNEKEDLDKNVDNLKKEKDEIETKTLQLVDKIREVDIKMKEV 256

Query: 792 ADVNF 796
            D N 
Sbjct: 257 EDKNV 261


>gi|45201073|ref|NP_986643.1| AGL023Wp [Ashbya gossypii ATCC 10895]
 gi|44985856|gb|AAS54467.1| AGL023Wp [Ashbya gossypii ATCC 10895]
          Length = 1222

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITG--QRARSHLMGQDEKLKSLASFLKVSQGN 755
           H     ++    +  E+ +     R+E+     Q+AR  L     +L SL S     Q N
Sbjct: 810 HSRELQQLQKEVMNIENKLEFETERLESTIKRQQKAREDLKKVQGELDSLTSQETDIQSN 869

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           +     +I EE + L+    K K + N   +    I D
Sbjct: 870 LEQVTNQIAEETKVLEEAQEKLKKKGNNIKIIEDTIND 907


>gi|331268585|ref|YP_004395077.1| exonuclease [Clostridium botulinum BKT015925]
 gi|329125135|gb|AEB75080.1| exonuclease, putative [Clostridium botulinum BKT015925]
          Length = 1176

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 77/235 (32%), Gaps = 28/235 (11%)

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +  G   T           +     E K      N  + +N    T+     +  A G  
Sbjct: 59  TNKGFINTTTKNLNVSYEFEIGVGKERKIYLAERNIKVNKNDRYNTKHARLLEKSAEGER 118

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +       +  +  +        + ++     V   G+      +     R  + RI A
Sbjct: 119 IIAEGPTELQNEIQKIIGLTVDDFTRSV-----VLPQGKFSDFLKLGGREKRNMLERIFA 173

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVV----GRVEEIWEE--------YRKLQLI 773
           +       +     EK+K + +   + + N++     + E++ EE         ++LQ  
Sbjct: 174 L-----EKYGQVLSEKIKKVRNI-NLKEENILMGELKKYEDLTEEGFKEKESRLKELQKE 227

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK-----SVMDALQKKIQSG 823
             + K++    D S  K  ++  +     E  +KELK       ++  +++ + G
Sbjct: 228 QDELKIKKRDVDKSYEKYKEIWNLQLEFKEFKNKELKLNEKLDYVNLKKEQFKKG 282


>gi|261402423|ref|YP_003246647.1| CobB/CobQ domain protein glutamine amidotransferase
           [Methanocaldococcus vulcanius M7]
 gi|261369416|gb|ACX72165.1| CobB/CobQ domain protein glutamine amidotransferase
           [Methanocaldococcus vulcanius M7]
          Length = 493

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 22/108 (20%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV 804
             LK+S        E+I+E+ RK++        K QL  E      I +           
Sbjct: 195 KHLKISDDE----KEKIFEKNRKIKKELKIRSLKNQLTSEINISKNINNTKN-------- 242

Query: 805 DSKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRF 850
                +++ +  + K+ +  GI++L   S   K  +   ++  L  + 
Sbjct: 243 -----RNL-ERGKNKLNNMKGIVLLSTSSNSGKTFLTTALSAKLKGKI 284


>gi|169334015|ref|ZP_02861208.1| hypothetical protein ANASTE_00408 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258732|gb|EDS72698.1| hypothetical protein ANASTE_00408 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1252

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 97/287 (33%), Gaps = 35/287 (12%)

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             +      + S  +   +            V T  + + +           +   +  +
Sbjct: 90  MLEFNDDVNMDSTVVDLRDKISMVEGYWPDEVSTPYILKMNPNMMPVMVSTVSMKGEDTK 149

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTG---EIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +S+  E+  + +     G    ST    E  +  ++S+  I+   ++I    G +    
Sbjct: 150 ALSLLLEEKVIPALEGTDGVASVSTNGMLEDSISVVLSDKKIKDVNKKITDAVGSQ---- 205

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
               + +L S  + +   +  +  +++E+ +  + L+    + +   +       K +++
Sbjct: 206 FASGESQLASGKTKIASGEKAINAQIKELNKNLKILKSSKTQLEKLQDTVTELEDKKSEL 265

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL--IVVTEDLLD-RFN 851
           +     +S +D + +K + ++L+    +        S+E K  V     + + L      
Sbjct: 266 DLTVTTLSAID-RSIKELENSLKTADPN--------SEEYKTIVASLAAIDKQLASMGLK 316

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             D++   A+   G                  + DQA+  +   LKK
Sbjct: 317 RSDVSNSLAQAKAGQK----------------QIDQALNKIDKNLKK 347


>gi|188993267|ref|YP_001905277.1| hypothetical protein xccb100_3872 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735027|emb|CAP53239.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 1210

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 44/116 (37%), Gaps = 4/116 (3%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            H+   + +L+     L+     +    EE+     + Q ++ + +      + S  ++ 
Sbjct: 681 EHVQMLENELRITRERLQAMIEELESTNEELKSSNEEYQSLNEELQSANEELETSKEELQ 740

Query: 793 DVNFMSHIISEVDSKELKSVM---DALQKKIQSGIIMLVGISKEKKA-SVLIVVTE 844
            VN     ++   +  ++ +      L+  ++S  I  V +  E +  +    VT+
Sbjct: 741 SVNEEVTTVNGELAHRVQELAHANSDLKNLLESTQIATVFLDNELRVTNFTPAVTD 796


>gi|158287800|ref|XP_309709.4| AGAP010985-PA [Anopheles gambiae str. PEST]
 gi|157019363|gb|EAA05444.4| AGAP010985-PA [Anopheles gambiae str. PEST]
          Length = 1088

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 16/159 (10%)

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +   + T++      +      LL  +      +   +    GV+       T  + T 
Sbjct: 821 QEVERMKTQLREYVQEMQRAEELLLEKERERESMLERFKSLSEGVNVLETSNHTLEAETS 880

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           E   L   +E  I      +E +T +R   ++   + ++  L++ L  ++  +    E +
Sbjct: 881 EARKLLQEAEERIAT----LEELTNER-EQNIRECEHQINELSASLAAAESEL----EAL 931

Query: 764 WEEYRKLQLIHA-------KRKLQLNVEDLSCHKIADVN 795
            EE + L L          K  LQ +       + +++ 
Sbjct: 932 REENKALALDLEATKELCGKLDLQKDKLQAELEEHSNIR 970


>gi|156551772|ref|XP_001602573.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 672

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL----QLNVE 784
           QR    L  ++ +L+   + LK     +V   E + +   +L    +K KL     L  E
Sbjct: 372 QRLEELLAEKESQLQRKQASLKNLSDELVKANEILGKLQNELASTKSKLKLRTSIALEQE 431

Query: 785 DLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQ 821
            L  +K  +V  +   +     +S+E K+ +D+L+++I+
Sbjct: 432 RLLDNKQKEVGQLESKMDRYAKESREAKAQVDSLKEQIK 470


>gi|157124400|ref|XP_001660459.1| microtubule-associated protein [Aedes aegypti]
 gi|108874022|gb|EAT38247.1| microtubule-associated protein [Aedes aegypti]
          Length = 4478

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 17/129 (13%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE----EYRKLQLIHAKRKLQLN 782
             G+         DEK+ S    +K S      + E +      E ++L+ +    K +++
Sbjct: 1420 VGEDLHKKTQQVDEKVASEVDKIKTSVEQAAIKAESVLTSIETEKKELEKLATDLKQEVS 1479

Query: 783  VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             +  +  K            ++D  EL   ++ +Q+K +SGI    G   E   + +  V
Sbjct: 1480 GQIDATKK------------QLD-DELNKAVEQVQEKAKSGISSFFGGITESIKTGIEKV 1526

Query: 843  TEDLLDRFN 851
             + +  +  
Sbjct: 1527 ADKVETKLK 1535


>gi|33946321|ref|NP_891991.1| ninein isoform 5 [Homo sapiens]
 gi|119586098|gb|EAW65694.1| ninein (GSK3B interacting protein), isoform CRA_c [Homo sapiens]
          Length = 2090

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1447 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1506

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1507 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1566

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1567 AVQKMVENLKKQISE 1581


>gi|311033487|sp|Q8N4C6|NIN_HUMAN RecName: Full=Ninein; Short=hNinein; AltName: Full=Glycogen synthase
            kinase 3 beta-interacting protein;
            Short=GSK3B-interacting protein
          Length = 2090

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1447 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1506

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1507 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1566

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1567 AVQKMVENLKKQISE 1581


>gi|290979252|ref|XP_002672348.1| predicted protein [Naegleria gruberi]
 gi|284085924|gb|EFC39604.1| predicted protein [Naegleria gruberi]
          Length = 447

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 34/69 (49%)

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
            N+  ++ E+ +E + L     K K +LN+ +  C ++ + N +     +++  + + + 
Sbjct: 124 ENLSEKINELQDENKSLIQSSEKDKAELNLLNQLCEELREKNEIVQKTVQLNEDQFQMLK 183

Query: 814 DALQKKIQS 822
           +   + +++
Sbjct: 184 EQQTENLKN 192


>gi|296109743|ref|YP_003616692.1| transcriptional regulator, MarR family [Methanocaldococcus infernus
           ME]
 gi|295434557|gb|ADG13728.1| transcriptional regulator, MarR family [Methanocaldococcus infernus
           ME]
          Length = 411

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD--------VNFMSHIISEVDS--KELKS 811
           + +++ +       K K  LN +DL   K+ +        +N ++  +S+V+   +ELK+
Sbjct: 226 KFFKDKKDRDKELEKLKSLLNEKDLEIKKLTEEIKKKEEILNIVNGKVSKVEMEKEELKN 285

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVL 839
            +++L+ + +  +I L+    E+K  + 
Sbjct: 286 QVNSLKNENEK-LIKLISELSEEKEKLA 312


>gi|224476075|ref|YP_002633681.1| ClpB chaperone [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420682|emb|CAL27496.1| ClpB chaperone [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 869

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  +    K   S L+        ++ ++ E  ++ +L  +++ L+    +    K 
Sbjct: 440 LKELQEELSNEKEKQSALQSRVEQEKEKISKLQE--KRAELDESRKALEDAENNYDLEKA 497

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKK 819
           A++      I +++ KEL+ + DA Q +
Sbjct: 498 AELQ--HGKIPKLE-KELRDLEDAFQDE 522


>gi|21930287|gb|AAG33512.2|AF302773_1 ninein-Lm isoform [Homo sapiens]
          Length = 2090

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1447 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1506

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1507 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1566

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1567 AVQKMVENLKKQISE 1581


>gi|313890926|ref|ZP_07824549.1| copper amine oxidase N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120723|gb|EFR43839.1| copper amine oxidase N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 527

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            + L  Q + L       +     +  ++E   +   KL+   AK + ++  +D   +KI
Sbjct: 49  INDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGEKLKQEKAKLEEEVRDKD---NKI 105

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +      ++  ++ EL + +  L+ K++
Sbjct: 106 AQLEKEIEYLTNSNNDELIAEITQLKDKLK 135


>gi|237738264|ref|ZP_04568745.1| metal-dependent hydrolase [Fusobacterium mortiferum ATCC 9817]
 gi|229420144|gb|EEO35191.1| metal-dependent hydrolase [Fusobacterium mortiferum ATCC 9817]
          Length = 252

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 41/238 (17%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-----------------GDGIRLQITDV 546
           + +   +  +VFD+T  Y E GGQ+GD+G  I                 G  I L+   V
Sbjct: 19  KLIEVNERGLVFDKTIAYPEGGGQIGDSGILIREKTKEEIEFLDTTKIKGRNIYLEDFPV 78

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL-LHHALSTILGSHV 605
            K    I  H  I     L      ++ ++ + R + +++HS  HL L    +   G   
Sbjct: 79  IKVEGVIIHHINISLLNNLELGEEFIIKLNVEKRAKTTLHHSGLHLALMILANMREGIDK 138

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G+ IT    R D +  +  +  EL+ IED  N++I + L                  
Sbjct: 139 KIVGAKITDTYGRLDFSTEEKFSKEELQKIEDKCNELIQEKLE----------------I 182

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +       +                S  CGGTH  +T  +  + +    +I     R+
Sbjct: 183 SSYHHTVENEAIYWKCLDY------SVPCGGTHCDNTKYLGKMKVKR-KNIGKTSERL 233


>gi|148536871|ref|NP_891989.2| ninein isoform 1 [Homo sapiens]
          Length = 2046

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1447 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1506

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1507 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1566

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1567 AVQKMVENLKKQISE 1581


>gi|145485034|ref|XP_001428526.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395612|emb|CAK61128.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1949

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 69/203 (33%), Gaps = 24/203 (11%)

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I     +FD +     +  + +  E+ VN  + Q +  + +I N E          L   
Sbjct: 506 IRQLREKFDYSSVLQNSMKDSQIQENVVNHQLEQQIERMQQIHNLEIQKMKKKIEKLTND 565

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTH----VSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             D  +V     +    +   +    H    + +  +I L    S++   + I       
Sbjct: 566 LQDANQVKKQFEQLIKQNKRLVEENMHLTEQIKNLADINLSKSFSDNMFNSKI------- 618

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-------EIWEEYRKLQLIHAKRKLQ 780
                     Q ++L+     LK     +  +++       +  ++ ++L+   AK K Q
Sbjct: 619 ------FNSDQYKELEQQLVVLKRKNEEIQSKLDIQLQRDTQQQDKIKQLEQEIAKYKNQ 672

Query: 781 LNVEDLSCHKIADVNFMSHIISE 803
           +   + +     +V  + + I +
Sbjct: 673 IREIEYNNSVSNEVKLLQNQIDD 695


>gi|123455564|ref|XP_001315525.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121898204|gb|EAY03302.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2207

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 729 QRARSHLMGQDE---KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           Q A      + E   +++  +  LK    ++  ++E+   + ++L+    +    +N + 
Sbjct: 805 QDAIDSKKKELENTPEVQDNSEELKKQLDDINEQIEKRKNDNKELEDKLEELSKAINEQK 864

Query: 786 LSCHKIADVN 795
           L+  + A  N
Sbjct: 865 LADEETAKKN 874


>gi|300676795|gb|ADK26671.1| coiled-coil domain containing 88A [Zonotrichia albicollis]
          Length = 1881

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E   L++ + K K  L+  
Sbjct: 623 GERAEELENELHRLEKE-NELLQKKITNLKITCEKIEALEQENSDLEMENRKLKKTLDSL 681

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 682 KNLTFQLESLEKENSQLDEENL-ELRRTIESLK 713


>gi|255531360|ref|YP_003091732.1| ATP-dependent chaperone ClpB [Pedobacter heparinus DSM 2366]
 gi|255344344|gb|ACU03670.1| ATP-dependent chaperone ClpB [Pedobacter heparinus DSM 2366]
          Length = 864

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADV 794
              + +   AS L++   +V  +V+E+  +  +L++     K + +   +     +IA+ 
Sbjct: 387 KAIDLMDEAASKLRLEMDSVPEKVDELNRKIMQLEIEREAIKRENDTRKVKSLAEEIAN- 445

Query: 795 NFMSHIISEVDSK--ELKSVMDALQKKIQ 821
             +S    E+ +K    K ++D +  +I+
Sbjct: 446 --LSAERDEIKAKWQGEKDLVDNINNEIE 472


>gi|300676892|gb|ADK26764.1| coiled-coil domain containing 88A [Zonotrichia albicollis]
          Length = 1881

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E   L+  + K K  L+  
Sbjct: 623 GERAEELENELHRLEKE-NELLQKKITNLKITCEKIEALEQENSDLETENRKLKKTLDSL 681

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 682 KNLTFQLESLEKENSQLDEENL-ELRRTIESLK 713


>gi|195978992|ref|YP_002124236.1| Emm-like cell surface protein CspZ.2 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975697|gb|ACG63223.1| Emm-like cell surface protein CspZ.2 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 626

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 24/61 (39%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L     K  + A  LK  +  +  +++++ ++ ++      K K +L     +  ++
Sbjct: 291 LKELQESSMKNDTAAQQLKKEKEALETKLQDLQKQAKEKSTEIEKLKQELEANKQNSGQL 350

Query: 792 A 792
            
Sbjct: 351 G 351


>gi|67468739|ref|XP_650383.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56467001|gb|EAL44997.1| hypothetical protein EHI_169670 [Entamoeba histolytica HM-1:IMSS]
          Length = 863

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           A  +     E  K     LK     +  ++EE+ EE  K +   A++++ +     S  +
Sbjct: 493 AEENSNSIIENEKKEKEDLKHQNEELKQQIEELKEENNKKERELAEKEVVIVSLQKSSEE 552

Query: 791 I 791
           +
Sbjct: 553 V 553


>gi|253681886|ref|ZP_04862683.1| cell division protein ZapA [Clostridium botulinum D str. 1873]
 gi|253561598|gb|EES91050.1| cell division protein ZapA [Clostridium botulinum D str. 1873]
          Length = 197

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            +L  Q E++K   S  K    ++   +  + E   +LQ      K    ++ +      
Sbjct: 70  ENLERQVEEVKKSESVFKTQIEDLKKHINNLEEYNAELQTKLESTKSGEYIKQIEDENKG 129

Query: 793 ---DVNFMSHIISEV--DSKELKSVMDALQKKIQSG 823
              ++  +   + +   +  +L+S    L+ +IQS 
Sbjct: 130 LKDEIEILKENVKKYLNEKNDLRSENKDLKFQIQSS 165


>gi|260940254|ref|XP_002614427.1| hypothetical protein CLUG_05913 [Clavispora lusitaniae ATCC 42720]
 gi|238852321|gb|EEQ41785.1| hypothetical protein CLUG_05913 [Clavispora lusitaniae ATCC 42720]
          Length = 1373

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           A   L   +  LK    ++      +   +E    E + L    + +K QL    ++  K
Sbjct: 730 AVEELQKTNSALKEKLGYMNAEISELEKSIEAKVAENKSLSNEVSIKKSQL---QVAIVK 786

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           + D       I+++++  +K     L+++I+  
Sbjct: 787 VDDFK---RNITDLETSNVK-----LKEEIERA 811


>gi|123123549|emb|CAM16867.1| centrosomal protein 110 [Mus musculus]
 gi|123232831|emb|CAM17906.1| centrosomal protein 110 [Mus musculus]
          Length = 1781

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 53/165 (32%), Gaps = 5/165 (3%)

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                 +       AL   K  +         E             H +   ++      
Sbjct: 307 EEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHY 366

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW---EEYR 768
            + ++++ + +I+ +T  + +     ++  L  L    K  +       E+     EE +
Sbjct: 367 LQENLKS-MEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELK 425

Query: 769 KLQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
            L+   A   KL      ++  ++  ++     I++  ++EL+  
Sbjct: 426 SLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEA 470


>gi|154413695|ref|XP_001579877.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121914088|gb|EAY18891.1| hypothetical protein TVAG_295440 [Trichomonas vaginalis G3]
          Length = 966

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             ++  +  L   LK  + ++  ++E   ++  +L     + +L+L           ++ 
Sbjct: 639 EEKEASIAKLIDILKSLKISIDKKIELHLQKQDELNKEIQRLELELGTIGSKMLNALNIK 698

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQS 822
                    ++KEL +V       IQS
Sbjct: 699 -----TDLANNKELVNVAFKALSDIQS 720


>gi|114577428|ref|XP_515485.2| PREDICTED: Hook-related protein 1 [Pan troglodytes]
          Length = 2027

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K  L+  
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSF 682

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 683 KNLTFQLESLEKENSQLDEENL-ELRRNVESLK 714


>gi|118350817|ref|XP_001008687.1| hypothetical protein TTHERM_00170270 [Tetrahymena thermophila]
 gi|89290454|gb|EAR88442.1| hypothetical protein TTHERM_00170270 [Tetrahymena thermophila
           SB210]
          Length = 471

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L  +  +        K  +   +  +EE+ +  + L+      K Q  + +      
Sbjct: 250 LKQLNDKQSEQSFQLEDFKEKEKEYLKSIEELQKSKKDLEKKIKSSKEQKKLLE------ 303

Query: 792 ADVNFMSHIISEVDSKELKS 811
            ++  +    SE+D   ++ 
Sbjct: 304 QEIKLIKERNSELDIVYMRQ 323


>gi|76155587|gb|AAX26878.2| SJCHGC00901 protein [Schistosoma japonicum]
          Length = 358

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 44/240 (18%)

Query: 662 SGAAALLGTKYNDRVRVVSVEY-----------EDGGVHSSALCGGTHVSSTGEIMLLYI 710
                    +Y  +VR V +                 V S+ LCGGTH+S   ++  + +
Sbjct: 48  KEIRYFPWEEYASKVRTVFIRKEKHINDDHDLINSNSVISAELCGGTHLSELSDLQDIAV 107

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV------EEIW 764
           V+    +  ++    I GQ A+      D+ +K   S  K S  N   +       E + 
Sbjct: 108 VAVKGRQKTVKEFTCIFGQSAKCAHQCADDLIKEGQSREKDSIYNPDKKATHINWFESVL 167

Query: 765 EEYR---------KLQLIHAKRKLQLNVEDLSCHKI------------ADVNFMSHIISE 803
            + R         +L+L     ++    + +  +++             +      +IS+
Sbjct: 168 NDSRYTGFLPLYARLELEANLYRINHKTDFIDNNQVQLYIDHIKLLIGNNYEVSRAVISK 227

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            D   L  ++ AL++   +  +++         ++ +    +L     A++LA   AK L
Sbjct: 228 FDFHRLDELIVALRQFNMTLPLVIYNT------NLAVCYFPNLSPNQTALNLAHAIAKRL 281


>gi|326915681|ref|XP_003204142.1| PREDICTED: utrophin-like, partial [Meleagris gallopavo]
          Length = 2483

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIW-EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
           Q ++L+ L+ +L V++  +     ++  ++   LQ    + K   N  +    K+  +  
Sbjct: 415 QKKQLQQLSDWLTVTEERIQKMESQLLADDLETLQKQLEEHKNLQNDLEAEQVKVNSLTH 474

Query: 797 MSHIISEV----DSKELKSVMDALQKKIQSGIIMLVGIS 831
           M  I+ E     D    +  +D L  ++   +  ++G S
Sbjct: 475 MVVIVDEXILKEDMGMKRQTLDQL-NELGQDVAQILGNS 512


>gi|312877144|ref|ZP_07737114.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796044|gb|EFR12403.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 466

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 38/96 (39%), Gaps = 2/96 (2%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-- 779
           RI +  G + +   + + E +K      K+     V + + + ++ R+ +   +  K   
Sbjct: 67  RIISYVGGKVKEIFVKEGEYVKKGEVLFKIDDEEYVKKRDLLKQQLREYEKKVSDLKELR 126

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +   +  S     +V ++ ++    +  +LK   + 
Sbjct: 127 KSIEKGESLRNKNNVYYLRYLSYSYEVNKLKKAAEE 162


>gi|289449727|ref|YP_003475388.1| hypothetical protein HMPREF0868_1100 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184274|gb|ADC90699.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 847

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 56/167 (33%), Gaps = 7/167 (4%)

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            L GG  + +     ++   +   +   I+RI     +     L   +  L+ +   +  
Sbjct: 340 ELAGGIRMMNDELDKVVSPENLDKLGKTIKRIIDDLKKVLGDFLPPDNASLREMKKTVSE 399

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
              ++    + +     KL  +         +  L          ++   ++ D  ELK 
Sbjct: 400 RLPDLKNWAKNLNAWQTKLSELDNSL---AAMNALQTADKTGAAVVTSTAADADLAELKG 456

Query: 812 VMDALQKKI----QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
           +++ L++K+    ++  I +   +   K +  +       +  +  D
Sbjct: 457 MLNELKQKVAANTETTTITVKSAAGNDKVASAVSDKPAATNEKSVSD 503


>gi|257066805|ref|YP_003153061.1| rod shape-determining protein MreC [Anaerococcus prevotii DSM
           20548]
 gi|256798685|gb|ACV29340.1| rod shape-determining protein MreC [Anaerococcus prevotii DSM
           20548]
          Length = 297

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 14/117 (11%)

Query: 739 DEKLKSLASFLKVSQG------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           ++   S++S +K               VE++ EE + L++ +AK    ++ ++    +  
Sbjct: 49  EKVTYSISSTIKEQVERSLGSKETRAAVEKLEEENKALEIENAKLNTIISKKNFLEEEKN 108

Query: 793 -----DVNFMSHIISEVDSKELKS--VMDALQKK-IQSGIIMLVGISKEKKASVLIV 841
                + ++M   +   DS  +     +D  +K  I+   I+L  I   K  + L+ 
Sbjct: 109 ALDNSENSYMKAKVVNTDSNSMTKNFTIDKGKKDGIEKNDIILQAIGDSKYYTGLVG 165


>gi|167037692|ref|YP_001665270.1| chromosome segregation protein SMC [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116107|ref|YP_004186266.1| chromosome segregation protein SMC [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856526|gb|ABY94934.1| chromosome segregation protein SMC [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929198|gb|ADV79883.1| chromosome segregation protein SMC [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1196

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
             L  + ++++S  + L V++  +  ++++  EEY  LQ     +  ++        +I
Sbjct: 333 EILREELKRVESNVALLHVNKKELEEKLKQFQEEYISLQKQQKDKIEEVEKAKEDIIEI 391


>gi|254302670|ref|ZP_04970028.1| DNA repair protein RecN [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322862|gb|EDK88112.1| DNA repair protein RecN [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 553

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-EIWEEYRKLQLIHAKRKLQLNVEDLS 787
           +  +  L     +   +A  L  S+  +  ++E E+  E + L +  AK K+Q+N  +  
Sbjct: 344 KELKKELNKIKTEYDKIAEKLTNSRKEIAVKIENELLNELKFLNMEDAKLKVQINKLEKM 403

Query: 788 CHK-IADVNFMSHIISEVDSKELKSVM 813
            +    +V F        D K L  + 
Sbjct: 404 TNDGYDEVEFFISTNVGQDLKPLNKIA 430


>gi|315221168|ref|NP_001186735.1| laminin subunit alpha-1 [Gallus gallus]
          Length = 3093

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 11/116 (9%)

Query: 710  IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
            + + SS++  I R E++    A   + G  + +      L      +  +V     E + 
Sbjct: 1913 VYTHSSVKNVIERTESLA-DDASRVVNGPLDLVNESLGLLGKDTLQLSSKV---QNEAKN 1968

Query: 770  LQLIHAKRKLQLNVEDLSCHKIAD--VNFMSHIISEVDS-KEL----KSVMDALQK 818
            L+        +LN       KI +  V  +SH+   + + K L    +  M  +++
Sbjct: 1969 LKKKSNGLLSELNGLSKKVEKIQESTVKIVSHLNDSLLALKALPNGTRKYMLEVKE 2024


>gi|37258|emb|CAA44819.1| Tpr [Homo sapiens]
          Length = 726

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              ++ L K ++  
Sbjct: 304 TRAVEELHKLLKEA 317


>gi|328913652|gb|AEB65248.1| hypothetical protein LL3_03722 [Bacillus amyloliquefaciens LL3]
          Length = 241

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
            + L   ++ LK     LK SQ  +    E +  E + L+    + K   N E   
Sbjct: 121 INELKKTNKSLKQDNEKLKDSQKKLEKAAETLQSENKTLKRQKEETKTAGNAESAQ 176


>gi|307170732|gb|EFN62857.1| Protein QN1-like protein [Camponotus floridanus]
          Length = 1460

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 30/154 (19%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN------VV 757
           +  ++ +  E   +  + R      ++         E+LK+L S  K++         + 
Sbjct: 794 DTKIILLEQELEKQENLIRAYETENKKLIQDTKRMQEELKNLQSKQKITVSEANDMQQLT 853

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-------------------DVNFMS 798
            RV+++ EE  KL L  ++ K +     L    +                      NF++
Sbjct: 854 DRVKDLQEETLKLNLEVSELKEKNADCLLKNDDLNQQNSLLTDELEMFKEQLRAKNNFIT 913

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             +  + + EL      L+K+I+   I L   S+
Sbjct: 914 DRLQVMSTAEL-----ELKKQIEDLSIKLSSKSE 942


>gi|291228769|ref|XP_002734353.1| PREDICTED: mannosidase, alpha, class 1A, member 2-like
           [Saccoglossus kowalevskii]
          Length = 640

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-EDLSCHKIADVN 795
            QD+ L+   + L+ +   V+  +++  EE    Q     +K++ ++   LS  +I D  
Sbjct: 115 RQDKALEEAQAALQGNPKEVLDAIQKEKEEILHNQKQEELKKVEEDIRLKLSNVEIVDTG 174

Query: 796 FMSHIISEVDSKELKSVMDALQK 818
            +     E    ++K   D +++
Sbjct: 175 VVGVKGREPTDADVKEKRDKVRE 197


>gi|256750713|ref|ZP_05491598.1| SMC domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750296|gb|EEU63315.1| SMC domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 451

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
             L  + ++++S  + L V++  +  ++++  EEY  LQ     +  ++        +I
Sbjct: 333 EILREELKRVESNVALLHVNKKELEEKLKQFQEEYISLQKQQKDKIEEVEKAKEDIIEI 391


>gi|123498891|ref|XP_001327501.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121910431|gb|EAY15278.1| hypothetical protein TVAG_394210 [Trichomonas vaginalis G3]
          Length = 1562

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + LK +  N+   V+ + EE + LQ    K K            + +          +
Sbjct: 301 VQAELKAN--NLEESVKRLKEETKYLQSQIFKMKRDELANAKKMTSLENHK------ESL 352

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + K LK+  D L+    +   +L     +KKA++
Sbjct: 353 E-KSLKNATDKLKLYEGNNNDLLKNQENDKKANL 385


>gi|7248896|gb|AAF43712.1|AF237959_1 M protein precursor [Streptococcus sp. 'group G']
          Length = 238

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
            V  + EE+     +L+  +A+ +     +++   +IA +   + I+  +     + + D
Sbjct: 123 EVSAKQEELVAAQLQLEAKNAEIENLKLQDNMKAEEIAKLESEAKILENLIGSGKRELGD 182

Query: 815 ---------ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
                    A + K++S  ++L  +    K  +      DL  + +A +
Sbjct: 183 LEAKLADANAQKAKLESEAVILENLIGSGKREIA-----DLQAKLDAAN 226


>gi|307066803|ref|YP_003875769.1| surface protein pspA precursor [Streptococcus pneumoniae AP200]
 gi|306408340|gb|ADM83767.1| surface protein pspA precursor [Streptococcus pneumoniae AP200]
          Length = 759

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 49/118 (41%), Gaps = 15/118 (12%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           +++ + LK  +  +  +  E+ ++  +L+ +      +   +D    + A+      +  
Sbjct: 246 EAIEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAAEAELNKKV-- 303

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARL 858
               + L++ +  L+K+I +  I+L G   E         T  L ++  A   +LA+ 
Sbjct: 304 ----ESLQNKVADLEKEISNLEILLGGADSEDD-------TAALQNKLAAKQAELAKK 350


>gi|224122832|ref|XP_002318927.1| predicted protein [Populus trichocarpa]
 gi|222857303|gb|EEE94850.1| predicted protein [Populus trichocarpa]
          Length = 344

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 16/117 (13%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
                +K + +    S      RV  + ++   LQ     R+           +I + + 
Sbjct: 132 QCLALIKEIDAK-NSSLKEHEERVSRLGDQLDNLQKDLQARESSQRQLKDEVMRI-EHDI 189

Query: 797 MSHIISEVDSKE--LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           M  I    DSK+  L+ ++D +                  K + ++VV ++ + +  
Sbjct: 190 MRAISQAGDSKDCELRKLLDEV------------SPKNFDKMNKILVVKDEEIAKLK 234


>gi|198418605|ref|XP_002124244.1| PREDICTED: similar to Beta heavy chain of outer-arm axonemal dynein
            ATPase, partial [Ciona intestinalis]
          Length = 3506

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 45/121 (37%), Gaps = 17/121 (14%)

Query: 725  AITGQRARSHL--MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKL 779
             +   R  ++       E++K   S L V    +  ++E +     KLQ   A+    K 
Sbjct: 3003 YLANDRRYNYTTPKSFLEQIKLYESLLGVKGKELQAKMERLENGLTKLQSTAAQVDDLKA 3062

Query: 780  QLNVEDLSCHKIAD-----VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            +L  +++   +  +     ++ +     +V  +  K++ D      +   + +  +   +
Sbjct: 3063 KLASQEVELQQKNEDADKLIHVVGIETEKVSKE--KAIADK-----EEAKVAVFAVEVGE 3115

Query: 835  K 835
            K
Sbjct: 3116 K 3116


>gi|187934597|ref|YP_001887717.1| DHH family protein [Clostridium botulinum B str. Eklund 17B]
 gi|187722750|gb|ACD23971.1| DHH family protein [Clostridium botulinum B str. Eklund 17B]
          Length = 646

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 28/158 (17%)

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
             ASFL+ S  + +  +++I+ +   L+         L  E +   ++ D   ++     
Sbjct: 508 EAASFLRKSGADTIE-IKKIFSD--DLENYL------LIAETIKSAEVNDNIAIAICPKN 558

Query: 804 VDSKELKSVMDALQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAK 861
           VD+  +    D L       +  +L  I+ +      I ++       +A D+  ++  +
Sbjct: 559 VDTVIVAKAADELLNISGINVSFVLAQINND------IYIS-----GRSAGDINVQIVLE 607

Query: 862 VLGGGGGGGRPHMAQSGGPNGN-KADQAIAGVASFLKK 898
            LGGGG     HM  +G    + K +  +  +   +KK
Sbjct: 608 TLGGGG-----HMNIAGAKISDAKIEDVVYDLKEAIKK 640


>gi|149060541|gb|EDM11255.1| golgi autoantigen, golgin subfamily b, macrogolgin 1, isoform CRA_c
           [Rattus norvegicus]
          Length = 3187

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-QLNVED 785
           T +     L   ++ +  L   +      +  + E + EE +  +    K KL       
Sbjct: 45  TQKDVLDRLADAEKLVLELKDIISKQDAQLQQKDEALQEEKKGAESKIKKIKLHAKAKIT 104

Query: 786 LSCHKIADVN 795
               +I ++ 
Sbjct: 105 SLNKQIEELK 114


>gi|119873149|ref|YP_931156.1| hypothetical protein Pisl_1661 [Pyrobaculum islandicum DSM 4184]
 gi|119674557|gb|ABL88813.1| conserved hypothetical protein [Pyrobaculum islandicum DSM 4184]
          Length = 350

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRI---EAITGQRARSHLMGQDEKLKSLASF----- 748
           TH+++    +  Y     +IR  I R+    A+  Q   +    + E  K LA       
Sbjct: 193 THIAALKNQVDEYKNRREAIRNEIARLAQDLALVKQELANLKASRQEIYKELAELKKKRD 252

Query: 749 -LKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
            LK  +  +   + ++  + ++L  +    + +L+     L   ++A+ N     I  + 
Sbjct: 253 ELKRKREEIKEEILQLAVKRKELREKKRAIQEELEKYSILLKALELAERNKARSQIKAIT 312

Query: 806 SKELKSVMDALQKKIQSG 823
            + LK   + L  K+ +G
Sbjct: 313 EQSLKERAEILYNKLLNG 330


>gi|167040353|ref|YP_001663338.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X514]
 gi|300914437|ref|ZP_07131753.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X561]
 gi|307724327|ref|YP_003904078.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X513]
 gi|166854593|gb|ABY93002.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X514]
 gi|300889372|gb|EFK84518.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X561]
 gi|307581388|gb|ADN54787.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X513]
          Length = 1196

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
             L  + ++++S  + L V++  +  ++++  EEY  LQ     +  ++        +I
Sbjct: 333 EILREELKRVESNVALLHVNKKELEEKLKQFQEEYISLQKQQKDKIEEVEKAKEDIIEI 391


>gi|257467552|ref|NP_033315.2| STE20-like serine/threonine-protein kinase isoform 1 [Mus musculus]
 gi|94730572|sp|O54988|SLK_MOUSE RecName: Full=STE20-like serine/threonine-protein kinase;
           Short=STE20-like kinase; Short=mSLK; AltName: Full=Etk4;
           AltName: Full=STE20-related kinase SMAK; AltName:
           Full=STE20-related serine/threonine-protein kinase;
           Short=STE20-related kinase; AltName:
           Full=Serine/threonine-protein kinase 2
 gi|124297201|gb|AAI31676.1| STE20-like kinase (yeast) [Mus musculus]
          Length = 1233

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     R+L+    KR+ +   +    
Sbjct: 900 DEAKRIKGEQEKELSKFQNVLKNRKKEVMNEVEKAP---RELRRELTKRRKEELAQSQHA 956

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 957 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 986


>gi|2773156|gb|AAB96682.1| serine/threonine protein kinase [Mus musculus]
          Length = 1233

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A+     Q+++L    + LK  +  V+  VE+     R+L+    KR+ +   +    
Sbjct: 900 DEAKRIKGEQEKELSKFQNVLKNRKKEVMNEVEKAP---RELRRELTKRRKEELAQSQHA 956

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     F+     E+D   LK ++   + ++ +
Sbjct: 957 QEQE---FVQKQQQELDG-SLKKIIQQQKAELAN 986


>gi|20302065|ref|NP_620240.1| Golgin subfamily B member 1 [Rattus norvegicus]
 gi|516826|dbj|BAA05026.1| rat GCP360 [Rattus norvegicus]
          Length = 3187

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-QLNVED 785
           T +     L   ++ +  L   +      +  + E + EE +  +    K KL       
Sbjct: 45  TQKDVLDRLADAEKLVLELKDIISKQDAQLQQKDEALQEEKKGAESKIKKIKLHAKAKIT 104

Query: 786 LSCHKIADVN 795
               +I ++ 
Sbjct: 105 SLNKQIEELK 114


>gi|84501632|ref|ZP_00999804.1| Threonyl-tRNA synthetase, class IIa [Oceanicola batsensis HTCC2597]
 gi|84390253|gb|EAQ02812.1| Threonyl-tRNA synthetase, class IIa [Oceanicola batsensis HTCC2597]
          Length = 659

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 12/197 (6%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           +  +  + S+ +     + + L +       +       +   V      +   G  +D 
Sbjct: 50  QWPIEKDASVAIHTMQDDEQALELIRHDLAHIMARAVQEIWPEVKVTIGPVRDYGWFYDF 109

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV--V 679
              +P T  +L  IE  + +II     V T + +R+ AIA         K     R+   
Sbjct: 110 DREEPFTPEDLGRIEARMKEIINARDAVRTEVWSRDQAIAHYEKTGEPYKVELVNRIPEG 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA---------GIRRIEAITGQR 730
                        LC G H+  TG++            A          ++RI  I  + 
Sbjct: 170 EPIRMYWHGDWQDLCRGPHLQHTGQVPADAFKLTHIAGAYWLGDSSRPMLQRIYGIAFKN 229

Query: 731 ARSHLMGQDEKLKSLAS 747
            R+ L      L+  A 
Sbjct: 230 -RNDLKAHLNMLEEAAK 245


>gi|326495436|dbj|BAJ85814.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 794

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
            RA      + E L +    LK      V  +  E  ++  KL+  ++  KL+L    ++
Sbjct: 261 MRACEVNTQKIELLNAEVERLKGLLDSEVESKSREAADKIGKLEAENSVLKLELEKAKVA 320

Query: 788 CHKIADVNFMSHIISEVDSKELK-------SVMDALQKKIQ 821
             K+ ++  +   +   D    K        + D L+KK+Q
Sbjct: 321 EKKVIELEGVVEQL-RADVANAKKECSKSEELADQLKKKVQ 360


>gi|308175316|ref|YP_003922021.1| hypothetical protein BAMF_3425 [Bacillus amyloliquefaciens DSM 7]
 gi|307608180|emb|CBI44551.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
          Length = 242

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
            + L   ++ LK     LK SQ  +    E +  E + L+    + K   N E   
Sbjct: 122 INELKKTNKSLKQDNEKLKDSQKKLEKAAETLQSENKTLKRQKEETKTAGNAESAQ 177


>gi|291401474|ref|XP_002717084.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus]
          Length = 409

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 3/77 (3%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKV---SQGNVVGRVEEIWEEYRKLQLIHAK 776
             R E      +   +   +E   SL   LK            VE++ E+  +L+    K
Sbjct: 197 THRSEFFKDDGSLKEVHKINEMYASLQDELKSICEKVEESERAVEKLLEDVNRLKREIKK 256

Query: 777 RKLQLNVEDLSCHKIAD 793
           RK          +   D
Sbjct: 257 RKQAQIQAVGEKNIPKD 273


>gi|196003640|ref|XP_002111687.1| hypothetical protein TRIADDRAFT_55968 [Trichoplax adhaerens]
 gi|190585586|gb|EDV25654.1| hypothetical protein TRIADDRAFT_55968 [Trichoplax adhaerens]
          Length = 7710

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 730  RARSHLMGQDEKLKSL-ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +A      Q EK   L    LK     +  R  +  EE ++      + K +        
Sbjct: 7059 KAIKDFDKQLEKEMDLQKQKLKQDIEELDARKTKAIEEKKEQAKQELEAKQKSGSSKEEL 7118

Query: 789  HKIAD--VNFMSHIISEVDSKELK 810
             ++ D     +  + +++D+  ++
Sbjct: 7119 QRLTDQHEKDLLALQNKLDADRMR 7142


>gi|156446647|gb|ABU63457.1| adhesion factor precursor [Finegoldia magna]
          Length = 616

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           E +K L  F K+S      ++ ++ EE  KL+  +AK             ++  +     
Sbjct: 367 ELIKELEEFSKLSSSEQFAKIAKLQEELAKLKKEYAK-------TSDGIQQVKKLVPYQF 419

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            + + + K ++ +   L     +  +               +V
Sbjct: 420 HVKDTEGKGVQGLTLRLANIDDTSKVYTATSDANGLIQFKSMV 462


>gi|118401853|ref|XP_001033246.1| hypothetical protein TTHERM_00419910 [Tetrahymena thermophila]
 gi|89287594|gb|EAR85583.1| hypothetical protein TTHERM_00419910 [Tetrahymena thermophila SB210]
          Length = 1955

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 17/109 (15%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              +  Q++    + +  K +   +  ++E    +  +E ++L+      K +      S 
Sbjct: 1493 DQIDKQNKLNNEMKNQNKTATEELKKKLEDSSKKWSDEKKQLEKDLQNLKDEKQQLKSSF 1552

Query: 789  HKI------------ADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             K+             + N +   I++++ KEL    D L++  +S  I
Sbjct: 1553 DKLTTILNSTQENSQNENNKLIQKITQIE-KELADAKDTLKESEESNFI 1600


>gi|45360619|ref|NP_988982.1| B-cell receptor-associated protein 31 [Xenopus (Silurana)
           tropicalis]
 gi|38174409|gb|AAH61339.1| B-cell receptor-associated protein 31 [Xenopus (Silurana)
           tropicalis]
          Length = 244

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
               A+ ++   D+  K L S L V   ++        E+ +KL+    K K +L     
Sbjct: 142 ASDAAKKYMEENDKLKKELKS-LGVEVSDLPD--NNAEEDNKKLKEEVRKLKEELGSARK 198

Query: 787 SCHKIA-DVNFMSHIISEV 804
           + HK   +V  +      +
Sbjct: 199 TLHKSESEVVAIKKQCEGL 217


>gi|71051089|gb|AAH98507.1| Filip1l protein [Mus musculus]
          Length = 909

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 28/224 (12%)

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  + +    +  I ++ +    G + ++      R RV+ +E +D  +         
Sbjct: 115 ETNRSLRKAEEELQDIKDKINKGEYGNSGIMDEVDELRKRVLDMEGKDEELIKMEEQCRD 174

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--- 754
                 +  +     +  +     RI       A   L    +K K     LK +     
Sbjct: 175 LNKRLEKETVQSKDFKLEVDKLSVRIT------ALEKLEDALDKSKQECYSLKCNLEKEK 228

Query: 755 ----NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                +   +E +    ++L+ I ++ +           K+  +  M          E K
Sbjct: 229 MTTKQLSEELESLNARIKELEAIESRLEKTEITLKDDLTKLKTLTVMLV-------DERK 281

Query: 811 SVMDALQ---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           ++ + L+    K+QS    L   +++ K +    VTE L++   
Sbjct: 282 TMSEKLKQTEDKLQSTTSQL--QAEQNKVT---TVTEKLIEETK 320


>gi|84394195|ref|ZP_00992925.1| putative methyl-accepting chemotaxis protein [Vibrio splendidus
           12B01]
 gi|84375177|gb|EAP92094.1| putative methyl-accepting chemotaxis protein [Vibrio splendidus
           12B01]
          Length = 704

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 12/148 (8%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA     A        +++++LA+  + S   +   +  + +E + + ++  + + Q N
Sbjct: 556 IEAARAGEAGRGFAVVADEVRNLANRTQGSTEEIRSMLARLEQETQSIVILMEQSQKQAN 615

Query: 783 VEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDA---LQKKIQSGIIML--VGISKE 833
                        +++N    +I++++  ++ S  +    + ++I   ++++    +   
Sbjct: 616 DTKGETQAAHLALSEINQAIEVINDMN-NQIASAAEEQSSVSEEINRNVVIINDTAVEVM 674

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAK 861
              +  + ++ +L     A DL    +K
Sbjct: 675 GTMTSSVAISNELT--VKAGDLHGELSK 700


>gi|301063005|ref|ZP_07203570.1| chromosome segregation protein SMC [delta proteobacterium NaphS2]
 gi|300442886|gb|EFK07086.1| chromosome segregation protein SMC [delta proteobacterium NaphS2]
          Length = 1192

 Score = 38.6 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----- 731
           ++ S E      ++     G H +    + L     E ++ A  R+I      R      
Sbjct: 247 KMRSTEALVDQKNALTATLGKHEARIVNMNLEMEEKEEALSA-CRKIHFDCRNRVQKRET 305

Query: 732 -RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               L G+   L  LAS L+  Q +V   +  + ++   L+    + 
Sbjct: 306 DIQSLDGELNTLSQLASRLENEQKDVHKNITALEKKKDHLEKELLRL 352


>gi|295424124|ref|NP_001171342.1| filamin A-interacting protein 1-like isoform 2 [Mus musculus]
          Length = 893

 Score = 38.6 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 28/224 (12%)

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  + +    +  I ++ +    G + ++      R RV+ +E +D  +         
Sbjct: 99  ETNRSLRKAEEELQDIKDKINKGEYGNSGIMDEVDELRKRVLDMEGKDEELIKMEEQCRD 158

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--- 754
                 +  +     +  +     RI       A   L    +K K     LK +     
Sbjct: 159 LNKRLEKETVQSKDFKLEVDKLSVRIT------ALEKLEDALDKSKQECYSLKCNLEKEK 212

Query: 755 ----NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                +   +E +    ++L+ I ++ +           K+  +  M          E K
Sbjct: 213 MTTKQLSEELESLNARIKELEAIESRLEKTEITLKDDLTKLKTLTVMLV-------DERK 265

Query: 811 SVMDALQ---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           ++ + L+    K+QS    L   +++ K +    VTE L++   
Sbjct: 266 TMSEKLKQTEDKLQSTTSQL--QAEQNKVT---TVTEKLIEETK 304


>gi|307152619|ref|YP_003888003.1| putative sensor with HAMP domain [Cyanothece sp. PCC 7822]
 gi|306982847|gb|ADN14728.1| putative sensor with HAMP domain [Cyanothece sp. PCC 7822]
          Length = 161

 Score = 38.6 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 14/94 (14%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            + + +  +D++L  LA   +     +  R E++ ++  +L++   K K           
Sbjct: 82  ESLNEVAARDDQLGQLARVFQNMVKQIKEREEKLKQQVEELKIEIDKTKKD--------- 132

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
                  ++ I+   + K LK  ++ L+ K    
Sbjct: 133 -----KQVAEILETDNFKNLKRKLNRLKNKQNKD 161


>gi|186703326|gb|ACC91883.1| downregulated in ovarian cancer 1 [Mus musculus]
          Length = 893

 Score = 38.6 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 28/224 (12%)

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  + +    +  I ++ +    G + ++      R RV+ +E +D  +         
Sbjct: 99  ETNRSLRKAEEELQDIKDKINKGEYGNSGIMDEVDELRKRVLDMEGKDEELIKMEEQCRD 158

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--- 754
                 +  +     +  +     RI       A   L    +K K     LK +     
Sbjct: 159 LNKRLEKETVQSKDFKLEVDKLSVRIT------ALEKLEDALDKSKQECYSLKCNLEKEK 212

Query: 755 ----NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                +   +E +    ++L+ I ++ +           K+  +  M          E K
Sbjct: 213 MTTKQLSEELESLNARIKELEAIESRLEKTEITLKDDLTKLKTLTVMLV-------DERK 265

Query: 811 SVMDALQ---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           ++ + L+    K+QS    L   +++ K +    VTE L++   
Sbjct: 266 TMSEKLKQTEDKLQSTTSQL--QAEQNKVT---TVTEKLIEETK 304


>gi|73969659|ref|XP_865395.1| PREDICTED: similar to Hook-related protein 1 isoform 5 [Canis
           familiaris]
          Length = 1791

 Score = 38.6 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 36/102 (35%), Gaps = 23/102 (22%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K      
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLK------ 676

Query: 785 DLSCHKIADVNFMSHIISEVDSK---------ELKSVMDALQ 817
                 +     ++  +  ++ +         EL+  +++L+
Sbjct: 677 ----KTLDGFKNLTFQLESLEKENSQLDEENLELRRNVESLK 714


>gi|62020217|gb|AAH16514.1| TPR protein [Homo sapiens]
          Length = 687

 Score = 38.6 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKV 751
           H  +T     L   ++  +  G  +     G          + K + ++        LK 
Sbjct: 191 HSQNTWLNTELKTKTDELLALGREK-----GNEILELKCNLENKKEEVSRLEEQMNGLKT 245

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--EL 809
           S  ++   VE++  + ++          +    +L+ H I   N       + ++K  EL
Sbjct: 246 SNEHLQKHVEDLLTKLKEA-KEQQASMEEKFHNELNAH-IKLSNLYKSAADDSEAKSNEL 303

Query: 810 KSVMDALQKKIQSG 823
              ++ L K ++  
Sbjct: 304 TRAVEELHKLLKEA 317


>gi|85711768|ref|ZP_01042824.1| hypothetical protein OS145_07751 [Idiomarina baltica OS145]
 gi|85694383|gb|EAQ32325.1| hypothetical protein OS145_07751 [Idiomarina baltica OS145]
          Length = 297

 Score = 38.6 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 729 QRARSHLMGQDEKLKSLAS-FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
            R    +  Q +     +   +K  +  +  R+ E+  + ++L +   + K  L  +   
Sbjct: 153 NRELRDIEFQRDVQDKASKAEMKTHKEELEARLAELKAQQKQLDIELNEMKKTLKAKQEK 212

Query: 788 CHK 790
             K
Sbjct: 213 VQK 215


>gi|319789067|ref|YP_004150700.1| chromosome segregation protein SMC [Thermovibrio ammonificans HB-1]
 gi|317113569|gb|ADU96059.1| chromosome segregation protein SMC [Thermovibrio ammonificans HB-1]
          Length = 1171

 Score = 38.6 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 56/158 (35%), Gaps = 15/158 (9%)

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
              GE+        +        +E+   ++A      + ++L      L   Q  +   
Sbjct: 725 KRLGEVEKRKEELLARRERAQENVESFNRRKAL--FENKLQELTKERKKLLSEQEELKSE 782

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSVMD 814
           +  + E    L+   ++ + Q          + +       F+  +  E++  E +  ++
Sbjct: 783 LMRLQERLDALKGELSELRTQRATLLEKLKAVKEKREAKERFLRTVQREIEEAERR--VE 840

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            L+K ++  I      ++E+   +L  V ++ ++   A
Sbjct: 841 QLKKDLEKAI-----SARERAVQLLSGV-DETIEEIKA 872


>gi|148665758|gb|EDK98174.1| mCG129490 [Mus musculus]
          Length = 893

 Score = 38.6 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 28/224 (12%)

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  + +    +  I ++ +    G + ++      R RV+ +E +D  +         
Sbjct: 99  ETNRSLRKAEEELQDIKDKINKGEYGNSGIMDEVDELRKRVLDMEGKDEELIKMEEQCRD 158

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--- 754
                 +  +     +  +     RI       A   L    +K K     LK +     
Sbjct: 159 LNKRLEKETVQSKDFKLEVDKLSVRIT------ALEKLEDALDKSKQECYSLKCNLEKEK 212

Query: 755 ----NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                +   +E +    ++L+ I ++ +           K+  +  M          E K
Sbjct: 213 MTTKQLSEELESLNARIKELEAIESRLEKTEITLKDDLTKLKTLTVMLV-------DERK 265

Query: 811 SVMDALQ---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           ++ + L+    K+QS    L   +++ K +    VTE L++   
Sbjct: 266 TMSEKLKQTEDKLQSTTSQL--QAEQNKVT---TVTEKLIEETK 304


>gi|47220594|emb|CAG05620.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1873

 Score = 38.6 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 34/154 (22%)

Query: 730  RARSHLMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             A S +      ++S  S L   +        ++    +  ++L+    + + Q      
Sbjct: 1667 AASSAIQQASADIQSTNSLLSSVESETADAELKLNNATQRLQQLEQDVMQLRDQAQNVSQ 1726

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV-------L 839
            S  +           ++ D+  ++ + + ++K++ + I       K+K A+V        
Sbjct: 1727 SKEQ-----------TDRDADSIRKIAEEVKKELDTEI-------KDKYATVEQLISTKA 1768

Query: 840  IVVTEDLLDRFN-----AVDLARLSAKVLGGGGG 868
            + V  D   R       A +L   +++ L    G
Sbjct: 1769 VGV-ADAKKRAQLLQQEAKELLLKASEKLQQLKG 1801


>gi|332158887|ref|YP_004424166.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034350|gb|AEC52162.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 160

 Score = 38.6 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 2/135 (1%)

Query: 585 INHSATHLLHHALSTILGSHV-SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             H+A H++  A+  +LG        + +  +     V  ++  T  E++ IE   N  +
Sbjct: 7   RTHTALHIVKGAVVKVLGEGAKWTASTYVKGNKGVLIVKFNRKPTEDEIREIERLANKKV 66

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N+P+    ++RE+A       +          V  ++       +   C   H  +TG
Sbjct: 67  EENVPIKIYELSREEAEKRFGEDMYDLFPVPE-DVKILKVLVIDDWNVNACNKEHTKTTG 125

Query: 704 EIMLLYIVSESSIRA 718
           E+  + I      ++
Sbjct: 126 EVGPIKIRKVRFRKS 140


>gi|281351410|gb|EFB26994.1| hypothetical protein PANDA_010114 [Ailuropoda melanoleuca]
          Length = 1933

 Score = 38.6 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              Q+A   L  +++K+ SL+   K      V  +E   E+ +KL++   + K +L  +  
Sbjct: 1003 AHQQALDDLQAEEDKVNSLSKI-KSKLEQQVDDLESSLEQEKKLRVDLERNKRKLEGDLK 1061

Query: 787  SCHK 790
               +
Sbjct: 1062 LAQE 1065


>gi|167377987|ref|XP_001734622.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165903827|gb|EDR29256.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 908

 Score = 38.6 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 29/192 (15%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I  +    +  +  G   I      + +  L    + LK   + LK     ++ + + 
Sbjct: 187 GKISSIKKGGKELVNKGKTMI-----NKGKDALQKGKDTLKKSVNNLKNKGQTIMNKGKN 241

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           I  + + L +   K  L+ NV +L       +N     +       LK  ++ L+ K + 
Sbjct: 242 IVNKGKNL-INKGKDALKKNVSNLKNKGKDMINK-GKNMINKGKDALKKGVNNLKNKGKD 299

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS--GGP 880
            I          K    +   +D L +    D  +     L   G       AQ+     
Sbjct: 300 MI---------NKGKNALKKGKDALKKGK--DALKKGVSNLKKKG-------AQALKSAK 341

Query: 881 NGNKADQAIAGV 892
           +  K  +A+  +
Sbjct: 342 DKGK--KALENI 351


>gi|119586096|gb|EAW65692.1| ninein (GSK3B interacting protein), isoform CRA_a [Homo sapiens]
          Length = 1824

 Score = 38.6 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1225 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1284

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1285 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1344

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1345 AVQKMVENLKKQISE 1359


>gi|119586104|gb|EAW65700.1| ninein (GSK3B interacting protein), isoform CRA_i [Homo sapiens]
          Length = 1868

 Score = 38.6 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1225 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1284

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1285 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1344

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1345 AVQKMVENLKKQISE 1359


>gi|119586101|gb|EAW65697.1| ninein (GSK3B interacting protein), isoform CRA_f [Homo sapiens]
          Length = 1956

 Score = 38.6 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1470 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1529

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1530 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1589

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1590 AVQKMVENLKKQISE 1604


>gi|169618920|ref|XP_001802873.1| hypothetical protein SNOG_12652 [Phaeosphaeria nodorum SN15]
 gi|111058830|gb|EAT79950.1| hypothetical protein SNOG_12652 [Phaeosphaeria nodorum SN15]
          Length = 1177

 Score = 38.6 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-LQLIHAKRKLQLNVEDLS 787
            +A   +  ++ K++ +A  L   +  +  ++E++ +E R  L+    + +L+   + + 
Sbjct: 179 DKAYKTMAKKEMKVQEIAELL---RDEIDPKLEKLRQEKRAFLEFQQTQSELERLTKLVI 235

Query: 788 CHKIADVNF-MSHIISEVDSK-----ELKSVMDALQKKIQ 821
            H        +     ++++K     +L      ++K+I+
Sbjct: 236 AHDYIRYKERLQQSADDLEAKKQRAIDLDEAAVRMKKEIE 275


>gi|118389858|ref|XP_001027974.1| RNA binding motif protein [Tetrahymena thermophila]
 gi|89309744|gb|EAS07732.1| RNA binding motif protein [Tetrahymena thermophila SB210]
          Length = 812

 Score = 38.6 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGN-----VVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           +A+  +  Q + L+     LK S+       V  +++E  +E ++ +    K K     +
Sbjct: 660 QAQKTMEDQIKLLEEQKKALKKSEDENKMKEVQNKIKEKQDEQQRQKQRLEKLKEVSQKD 719

Query: 785 DLSCHKIAD 793
           ++S  K  D
Sbjct: 720 EVSIEKQQD 728


>gi|325479825|gb|EGC82910.1| exonuclease SbcCD, C subunit [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 1012

 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              ++KL  L    K    ++    ++I E+    ++     K++   E L   K  ++ 
Sbjct: 584 KDLEKKLIDLREKYKSKAKDIKSY-KKIIED-TNTEIEENTLKIKNIEEKLKASKENEIK 641

Query: 796 FMSHI--ISEVDSKELKSVMDALQKKIQS 822
           ++S    +  ++  +L+     L++KI  
Sbjct: 642 YLSLRDKMEGLNKNDLEDSKQKLKEKIDK 670


>gi|73969661|ref|XP_865410.1| PREDICTED: similar to Hook-related protein 1 isoform 6 [Canis
           familiaris]
          Length = 1874

 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 36/102 (35%), Gaps = 23/102 (22%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K      
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLK------ 676

Query: 785 DLSCHKIADVNFMSHIISEVDSK---------ELKSVMDALQ 817
                 +     ++  +  ++ +         EL+  +++L+
Sbjct: 677 ----KTLDGFKNLTFQLESLEKENSQLDEENLELRRNVESLK 714


>gi|63102060|gb|AAH95849.1| LOC500700 protein [Rattus norvegicus]
          Length = 218

 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H  +  E+M  +   +S   + IR +EA     +          L  L   LK     + 
Sbjct: 58  HEQNIQELMRHFKNEKSEAESHIRTLEA----ESLEDKKVAKAHLGQL-EKLKSKCEKLA 112

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED 785
             + +   E +KL+L +   K +L  ++
Sbjct: 113 EELTQNENENKKLKLKYQSLKEELEAKE 140


>gi|301771622|ref|XP_002921226.1| PREDICTED: myosin-3-like isoform 1 [Ailuropoda melanoleuca]
          Length = 1940

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              Q+A   L  +++K+ SL+   K      V  +E   E+ +KL++   + K +L  +  
Sbjct: 1003 AHQQALDDLQAEEDKVNSLSKI-KSKLEQQVDDLESSLEQEKKLRVDLERNKRKLEGDLK 1061

Query: 787  SCHK 790
               +
Sbjct: 1062 LAQE 1065


>gi|297616663|ref|YP_003701822.1| methyl-accepting chemotaxis sensory transducer [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144500|gb|ADI01257.1| methyl-accepting chemotaxis sensory transducer [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 492

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 15/162 (9%)

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA----------ITG 728
            S+E    G        G  V +TG      +    S R G  R+            + G
Sbjct: 261 FSIEEMSVGNPIREGDAGWRVVTTG---STIVDDIESKRYGAFRMIGIPLFDEETGDVVG 317

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
               +      + LK +A+ LK +   +   +EEI     ++ +  +     +       
Sbjct: 318 AFGIATPRILAKNLKEMATILKTNVEEIALAMEEIAASASEINVNESNLADVIKEVQGIS 377

Query: 789 HKIADV-NFMSHIISEVDSKELKSVMDALQK-KIQSGIIMLV 828
            +I ++ NF+  +  +     L + ++A +  +   G  ++ 
Sbjct: 378 SEINEILNFIRSVADQTKMLGLNAAIEAARAGEHGRGFGVVA 419


>gi|307548894|ref|NP_001182585.1| myosin-3 [Oryctolagus cuniculus]
          Length = 1940

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              Q+A   L  +++K+ SL+   K      V  +E   E+ +KL++   + K +L  +  
Sbjct: 1003 AHQQALDDLQAEEDKVNSLSKI-KSKLEQQVDDLESSLEQEKKLRVDLERNKRKLEGDLK 1061

Query: 787  SCHK 790
               +
Sbjct: 1062 LAQE 1065


>gi|301773260|ref|XP_002922043.1| PREDICTED: ninein-like isoform 1 [Ailuropoda melanoleuca]
 gi|281343431|gb|EFB19015.1| hypothetical protein PANDA_010984 [Ailuropoda melanoleuca]
          Length = 2132

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 57/141 (40%), Gaps = 19/141 (13%)

Query: 698  HVSS---TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            H+       E+ L     +   R    R+ A+  Q+        +E+LK++   L+V+  
Sbjct: 1442 HLPRQAAIAELELEKKKLQELTRKLRERVTALVKQKDAPCQGENEEELKAMMHDLQVTCS 1501

Query: 755  NVVGRVEEIWEEYRKLQLIHAKRKLQL-------NVEDLSCHKIADV------NFMSHII 801
             +  +VE +  E  KLQ  ++  + ++       ++ +L   K+           ++   
Sbjct: 1502 EMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLGKLNGSQEEMWQKIVTVKQ 1561

Query: 802  SEVDSKELKSVMDALQKKIQS 822
             +     ++ +++ L+K+I  
Sbjct: 1562 EKA---AVQKMVENLKKQISE 1579


>gi|238882434|gb|EEQ46072.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 681

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED--LSCH 789
              L    + L      +     + +    ++ E  +K +L  AK + QL   +  L  +
Sbjct: 545 LKTLNIAQDALHQEVERVNAKLESTLKEHTDLQESNKKRELELAKLQKQLQSTENILQKY 604

Query: 790 KIADVNFMSHIISEVDSKELKSVMD 814
           K  + N +     E   + L+S+  
Sbjct: 605 KTNNTNSLLQE-DEQQLEALRSIAK 628


>gi|256087069|ref|XP_002579701.1| hypothetical protein [Schistosoma mansoni]
 gi|238665175|emb|CAZ35940.1| expressed protein [Schistosoma mansoni]
          Length = 2018

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-----RKLQLIHAKRKLQLNV---- 783
              L  + +  K+L +  KV    ++ RV+++  E      ++ ++    ++L+       
Sbjct: 1655 RLLQERLDNNKNLLNDTKVQLHEMMERVQKLQMETADAAAKRSEVEIQLKQLERLSTECQ 1714

Query: 784  --EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
               +    KI ++   +  ++E ++  L+S+ DA  +K +
Sbjct: 1715 HTNNELQMKINNIQVENANLTEKNANLLRSMNDAGIQKHE 1754


>gi|159128766|gb|EDP53880.1| nuclear condensin complex subunit Smc4, putative [Aspergillus
            fumigatus A1163]
          Length = 1441

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            + A   L     ++K L+   K S+ +   + E++  +   L+      + Q    +   
Sbjct: 978  ESANRSLADAQRRVKELSVAHKPSKAD-ANQAEQLEAQIAALEEEIEDLRAQKGGIEEEI 1036

Query: 789  H----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
                 KI +V  +     +     LK  +  L ++I +  I   G SK +K
Sbjct: 1037 QTLQNKIMEVGGVRLRSQKAKVDGLKEQISLLAEEISNAEI---GKSKNEK 1084


>gi|146322765|ref|XP_749352.2| nuclear condensin complex subunit Smc4 [Aspergillus fumigatus Af293]
 gi|129556791|gb|EAL87314.2| nuclear condensin complex subunit Smc4, putative [Aspergillus
            fumigatus Af293]
          Length = 1441

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            + A   L     ++K L+   K S+ +   + E++  +   L+      + Q    +   
Sbjct: 978  ESANRSLADAQRRVKELSVAHKPSKAD-ANQAEQLEAQIAALEEEIEDLRAQKGGIEEEI 1036

Query: 789  H----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
                 KI +V  +     +     LK  +  L ++I +  I   G SK +K
Sbjct: 1037 QTLQNKIMEVGGVRLRSQKAKVDGLKEQISLLAEEISNAEI---GKSKNEK 1084


>gi|160425231|ref|NP_001104237.1| myosin-9 [Canis lupus familiaris]
 gi|122135145|sp|Q258K2|MYH9_CANFA RecName: Full=Myosin-9; AltName: Full=Myosin heavy chain 9; AltName:
            Full=Myosin heavy chain, non-muscle IIa; AltName:
            Full=Non-muscle myosin heavy chain IIa; Short=NMMHC II-a;
            Short=NMMHC-IIA
 gi|89994139|emb|CAJ31056.1| myosin, heavy polypeptide 9, non-muscle [Canis lupus familiaris]
          Length = 1960

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 701  STGEIMLLYIVSESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGN 755
               E+ +     E  ++A + R+E  A     A   +   + ++  L   L   + S+  
Sbjct: 1070 QIAELKMQLAKKEEELQAALARVEEEATQKNMALKKIRELESQISELQEDLESERASRNK 1129

Query: 756  VVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
               +  ++ EE   L+             ++L   +  +VN +   + E +++  ++ + 
Sbjct: 1130 AEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EARTHEAQIQ 1188

Query: 815  ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA------VDLARLSAKVLGGGGG 868
             +++K    +  L    ++ K        +  L++          +LA    KVL  G G
Sbjct: 1189 EMRQKHSQAVEELAEQLEQTKRV------KANLEKAKQTLENERGELANEV-KVLQQGKG 1241


>gi|148238253|ref|NP_001086173.1| MGC84076 protein [Xenopus laevis]
 gi|49522264|gb|AAH74288.1| MGC84076 protein [Xenopus laevis]
          Length = 244

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV-----EEIWEEYRKLQLIHAKRKLQL 781
               A+ ++   D+  K L S L V   ++         +++ EE RKL+      K  L
Sbjct: 142 ASDAAKKYMEENDKLKKELKS-LGVEVNDLPDTNVEEDNKKLKEEVRKLKGELESAKKTL 200

Query: 782 NVEDLSCHKIA 792
           +  +     I 
Sbjct: 201 HKSESEVVAIK 211


>gi|73969653|ref|XP_852258.1| PREDICTED: similar to Hook-related protein 1 isoform 2 [Canis
           familiaris]
          Length = 1846

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 36/102 (35%), Gaps = 23/102 (22%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K      
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLK------ 676

Query: 785 DLSCHKIADVNFMSHIISEVDSK---------ELKSVMDALQ 817
                 +     ++  +  ++ +         EL+  +++L+
Sbjct: 677 ----KTLDGFKNLTFQLESLEKENSQLDEENLELRRNVESLK 714


>gi|68478265|ref|XP_716874.1| hypothetical protein CaO19.8591 [Candida albicans SC5314]
 gi|68478386|ref|XP_716814.1| hypothetical protein CaO19.976 [Candida albicans SC5314]
 gi|74656371|sp|Q5A4X0|BRE1_CANAL RecName: Full=E3 ubiquitin-protein ligase BRE1
 gi|46438498|gb|EAK97828.1| hypothetical protein CaO19.976 [Candida albicans SC5314]
 gi|46438560|gb|EAK97889.1| hypothetical protein CaO19.8591 [Candida albicans SC5314]
          Length = 681

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED--LSCH 789
              L    + L      +     + +    ++ E  +K +L  AK + QL   +  L  +
Sbjct: 545 LKTLNIAQDALHQEVERVNAKLESTLKEHTDLQESNKKRELELAKLQKQLQSTENILQKY 604

Query: 790 KIADVNFMSHIISEVDSKELKSVMD 814
           K  + N +     E   + L+S+  
Sbjct: 605 KTNNTNSLLQE-DEQQLEALRSIAK 628


>gi|328783141|ref|XP_001120525.2| PREDICTED: hypothetical protein LOC724634 [Apis mellifera]
          Length = 3468

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 738  QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVN 795
            ++  L+SL+   K    ++   +E +  E  +LQ  L   K KL       S  +   + 
Sbjct: 2381 KEADLESLSKRYKEEMDDLKDEMEALATENEQLQHFLEEQKIKLSALESKRSAEEDESI- 2439

Query: 796  FMSHIISEVDSK--ELKSVMDALQKKIQ 821
                I+ +++ K  EL++V+   +++  
Sbjct: 2440 ---QIVDDLNGKISELQAVLSKSREEYD 2464


>gi|326427496|gb|EGD73066.1| RDX protein [Salpingoeca sp. ATCC 50818]
          Length = 630

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H++   +  +      + +   ++  EA   +RA   L   ++  + L   +K  +    
Sbjct: 327 HLAREKQARMDAERKRAELEKRVKEYEAEA-RRAMQALAQSEKTARDLEEKMKRVEAEAA 385

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA------------DVNFMSHIIS--E 803
            R E +  E  +L+    +   Q+     +  +                  +    +  E
Sbjct: 386 ER-ERLRLEAERLKRQAEESIAQMRSSQTASEEEKRMILARTREAEEKAKQLEAEAAKRE 444

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            D+++L++ + A +K+       LV  +   K  ++
Sbjct: 445 RDAEDLQAALMAAKKQQVEDAKALVNATSTDKFHLM 480


>gi|320583505|gb|EFW97718.1| Essential protein involved in intracellular protein transport [Pichia
            angusta DL-1]
          Length = 1440

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 714  SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            S     I R  A+    + S +    +K+ SL   LK ++      V ++ E+ + L   
Sbjct: 1165 SGKAEEIERERALLAGNSDSVVKEYSQKISSLDEKLKKTEKERDAEVSKLKEQVKSLSSG 1224

Query: 774  HAKRKLQLNVEDLSCHKIAD-----VNFMSHIISEVDSK--ELKSVMDALQKKIQSGI 824
              +       ++    K+ D        +    +++++K  EL  + D ++++++  +
Sbjct: 1225 RQELLDSQTSKEAELKKLQDRLTSMEESLKQKENDIEAKGSELNDLRDKMKEQLRELV 1282


>gi|308478231|ref|XP_003101327.1| hypothetical protein CRE_13469 [Caenorhabditis remanei]
 gi|308263228|gb|EFP07181.1| hypothetical protein CRE_13469 [Caenorhabditis remanei]
          Length = 1815

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/326 (9%), Positives = 70/326 (21%), Gaps = 30/326 (9%)

Query: 498  QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            +G   E  V G   +                 + G     G   +++      + +    
Sbjct: 1019 EGAQCEHCVDGYYGDAKLKTC-----QRCVCNELGTNTTKGACDRVSGQCPCHDNVIGMQ 1073

Query: 558  AIVERGILRTEMSLVLTIDYQNR-RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
                        S             +  NH     L   +           G       
Sbjct: 1074 CDQCAENHFNLASGAGCEACGCDPNGVVPNHEGVPHLQCNIFDGQCQCKPGRGGRKCDQC 1133

Query: 617  LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
                                   +  +  +    T         A       G  Y  + 
Sbjct: 1134 EDLYWGDPTTPDGCHRCECNPTGSKSLQCHRNNGTCECQPGSGGALCNECARG--YTGQW 1191

Query: 677  RVVSVEYEDGGVHSSAL-----------CGGTHVSSTGEIMLL---YIVSESSIRAGIRR 722
               +   E      + +               ++  TG        +   E +++   + 
Sbjct: 1192 PYCNPCGECFHQWDNIMQKLQKQVHALIDTANNIEDTGVASAYDADFEKMEETLKETKKT 1251

Query: 723  I-EAITGQRARSHLMGQDEKLKS--LASFLK-----VSQGNVVGRVEEIWEEYRKLQLIH 774
            + +A   +     +  +   LK   +A   K         NV   V+   ++   LQ   
Sbjct: 1252 LADANISKEDIEEMSKKLALLKKQVIAGREKLGAIETRISNVTQAVDFAQKDLEHLQKES 1311

Query: 775  AKRKLQLNVEDLSCHKIADVNFMSHI 800
             + +      +    KI + + +   
Sbjct: 1312 ERVEKATIELEDKASKIKEADVLGAF 1337


>gi|218129154|ref|ZP_03457958.1| hypothetical protein BACEGG_00729 [Bacteroides eggerthii DSM 20697]
 gi|317475122|ref|ZP_07934390.1| hypothetical protein HMPREF1016_01369 [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988673|gb|EEC54992.1| hypothetical protein BACEGG_00729 [Bacteroides eggerthii DSM 20697]
 gi|316908766|gb|EFV30452.1| hypothetical protein HMPREF1016_01369 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 292

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 20/123 (16%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEY-------RKLQL 772
           IE I     R  +    E++  L + LK    +   +   VE + +E         +LQ 
Sbjct: 92  IEFI-----RKQMEENKEQIAKLQAMLKNSKTNSSQLKKAVESLTQELNAKTQRIEELQA 146

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A + +++   D +   +  V   S + +E ++K  K+V +    K  +    + G  K
Sbjct: 147 ELASKNIRIQELDAAVTDLNAVK--SELTAENEAKA-KTVAEQ--DKALNTAWFVFGTKK 201

Query: 833 EKK 835
           E K
Sbjct: 202 ELK 204


>gi|195340105|ref|XP_002036657.1| GM18973 [Drosophila sechellia]
 gi|194130537|gb|EDW52580.1| GM18973 [Drosophila sechellia]
          Length = 2008

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 30/64 (46%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            +  + ++  Q  ++K   + LK S   +  +++ + E    L+  + K K++LN      
Sbjct: 1509 KEVQENMSTQAGEVKRKIANLKGSVDELQLKLKSLQEVKDNLESENEKLKIKLNDAQNLQ 1568

Query: 789  HKIA 792
            +K+ 
Sbjct: 1569 NKVD 1572



 Score = 37.8 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 16/103 (15%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRV-----------EEIWEEYRKLQLIHAKRKLQ 780
              +    ++ L    S LK     +  +            E++    +  +LI  + + +
Sbjct: 1722 IEYFRTHEQLLDKTISNLKEENRKMEEKFSTVNKALNEDCEKLRSTLKSKELIMQQNRQE 1781

Query: 781  LNVEDLSCHKIADVN--FMSHIISEVDS-KELKSVMDALQKKI 820
            L        +   +N   ++ + S  D+ K L+   D++++ +
Sbjct: 1782 LEERLTVIDEKNGINARLVAQLKSNEDALKSLRE--DSIKQSL 1822


>gi|170744758|ref|YP_001773413.1| hypothetical protein M446_6729 [Methylobacterium sp. 4-46]
 gi|168199032|gb|ACA20979.1| hypothetical protein M446_6729 [Methylobacterium sp. 4-46]
          Length = 275

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN--VEDLS 787
            AR     Q +  K  A    +S   +           R  ++   KR  Q     E+L 
Sbjct: 144 EARKAARDQAKAEKEAARVAALSPEELKRETARKKGRERSARISAEKRDAQSRQWKENLR 203

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             + AD   + H+++ +    ++ ++D L++
Sbjct: 204 RREEADTKLV-HLLATLPPDTIREIVDLLRE 233


>gi|52699551|gb|AAU86898.1| ninein isoform 6 [Homo sapiens]
          Length = 1989

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1447 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1506

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1507 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1566

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1567 AVQKMVENLKKQISE 1581


>gi|12655864|gb|AAK00630.1| ninein isotype 3 [Homo sapiens]
          Length = 2073

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 58/136 (42%), Gaps = 12/136 (8%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1430 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1489

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF---------MSHIISEV--DS 806
             +VE +  E  KLQ  ++  + ++   +     I+++           M      V  ++
Sbjct: 1490 QKVELLRYESEKLQQENSILRNEITTLNEE-DSISNLKLGTLYWNSGRMRQKTETVKQEN 1548

Query: 807  KELKSVMDALQKKIQS 822
              ++ +++ L+K+I  
Sbjct: 1549 AAVQKMVENLKKQISE 1564


>gi|11498637|ref|NP_069865.1| chromosome segregation protein [Archaeoglobus fulgidus DSM 4304]
 gi|18201999|sp|O29230|RAD50_ARCFU RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|2649562|gb|AAB90211.1| purine NTPase, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 886

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 47/116 (40%), Gaps = 8/116 (6%)

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS------FLKVSQGNVVGRVEE 762
                  I   I+ IE++  ++    +   + +LK L         L+  + +V+  V  
Sbjct: 192 KKAEIERISEEIKSIESLR-EKLSEEVRNLESRLKELEEHKSRLESLRKQESSVLQEVRG 250

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           + E+ R+L+    +   ++   +    ++ ++   +   S ++ K L  +  AL+ 
Sbjct: 251 LEEKLRELEKQLKEVVERIEDLEKKAKEVKELKPKAERYSILE-KLLSEINQALRD 305


>gi|326915740|ref|XP_003204171.1| PREDICTED: coiled-coil domain-containing protein C6orf97-like,
           partial [Meleagris gallopavo]
          Length = 721

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 17/105 (16%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVG----------RVEEIWEEYRKLQLIHAKRKLQL 781
              L  Q +  +   + LK                   +EE+ +   KL+ ++ K + QL
Sbjct: 565 IERLQKQLDLARETNTDLKAKLSETSELKIQTIEQNRTIEELNKSQGKLERMNEKAEKQL 624

Query: 782 NV----EDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKK 819
           N       L   K  +    +  + EV   + K L++ +  L  +
Sbjct: 625 NSVKSELKLKEQKANEEKEKAKKMLEVVSSEMKALRTTLAELANR 669


>gi|325117610|emb|CBZ53162.1| hypothetical protein NCLIV_029500 [Neospora caninum Liverpool]
          Length = 172

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              +    +++K +   +K     + G +++I +E +       K   ++ V       I
Sbjct: 92  IKKINKDIKEIKKINQEIKKVNKEIKGEIKKINKEIKGEIKEIKKINQEIKVNKEIKGDI 151

Query: 792 ADVNFMSHIIS 802
            ++      IS
Sbjct: 152 KEIKKAVKRIS 162


>gi|301773262|ref|XP_002922044.1| PREDICTED: ninein-like isoform 2 [Ailuropoda melanoleuca]
          Length = 2045

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 57/141 (40%), Gaps = 19/141 (13%)

Query: 698  HVSS---TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            H+       E+ L     +   R    R+ A+  Q+        +E+LK++   L+V+  
Sbjct: 1442 HLPRQAAIAELELEKKKLQELTRKLRERVTALVKQKDAPCQGENEEELKAMMHDLQVTCS 1501

Query: 755  NVVGRVEEIWEEYRKLQLIHAKRKLQL-------NVEDLSCHKIADV------NFMSHII 801
             +  +VE +  E  KLQ  ++  + ++       ++ +L   K+           ++   
Sbjct: 1502 EMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLGKLNGSQEEMWQKIVTVKQ 1561

Query: 802  SEVDSKELKSVMDALQKKIQS 822
             +     ++ +++ L+K+I  
Sbjct: 1562 EKA---AVQKMVENLKKQISE 1579


>gi|300707752|ref|XP_002996072.1| hypothetical protein NCER_100886 [Nosema ceranae BRL01]
 gi|239605337|gb|EEQ82401.1| hypothetical protein NCER_100886 [Nosema ceranae BRL01]
          Length = 391

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 31/125 (24%)

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH---KIADVNFM-------SHIISE 803
             ++ ++  I+ E + ++  +   K   +++DL      K  D+  +       S +I++
Sbjct: 231 NELLDKIRRIYNENKNIKQENKHLKESSDIKDLKKEIEDKKNDIKQLQSQNISFSEVITK 290

Query: 804 VD-------------SKELKSVMDALQKKI-----QSGIIMLVGISKEKKASVLIVVTED 845
           +D             S E K ++D+L+ K      Q  I+ ++      K +++I   +D
Sbjct: 291 LDTTNIKLKKECIILSNEYKKLVDSLKSKNTIIEKQKRILEVLQKQVGGKENIVI---DD 347

Query: 846 LLDRF 850
           L  + 
Sbjct: 348 LKRKI 352


>gi|163791250|ref|ZP_02185665.1| peptidase, M48 family protein [Carnobacterium sp. AT7]
 gi|159873454|gb|EDP67543.1| peptidase, M48 family protein [Carnobacterium sp. AT7]
          Length = 442

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           +      + ++   LK  +  +     ++E++  E  KL+ + AKR+ +L  +  S    
Sbjct: 72  VEKLQTDIDAVVLELKAQEQKLADSKAKIEKLKVEIEKLKDLIAKREEKLEHQARSVQTD 131

Query: 792 ADVNFMSHIISEVDSKELKSV------MDALQKKIQSGIIMLVGISKEKK 835
            +   M  ++  + +  L  +      ++ L    +    ++     +KK
Sbjct: 132 GNTTNMVELV--LSADSLSDLIGRVGVVNQLVSANKD---IVTQQENDKK 176


>gi|149060539|gb|EDM11253.1| golgi autoantigen, golgin subfamily b, macrogolgin 1, isoform CRA_a
           [Rattus norvegicus]
          Length = 2206

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-QLNVED 785
           T +     L   ++ +  L   +      +  + E + EE +  +    K KL       
Sbjct: 45  TQKDVLDRLADAEKLVLELKDIISKQDAQLQQKDEALQEEKKGAESKIKKIKLHAKAKIT 104

Query: 786 LSCHKIADVN 795
               +I ++ 
Sbjct: 105 SLNKQIEELK 114


>gi|145524249|ref|XP_001447952.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415485|emb|CAK80555.1| unnamed protein product [Paramecium tetraurelia]
          Length = 216

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-LNVEDLS 787
           + A      + ++L      L   +  ++   +++ EE + L+    + + +  +++D  
Sbjct: 43  KEALEW-KEKYDRLHKQNHTLDHEKKQLLDEKKKLIEEIKNLENSVQQLQEKTKDLKDYE 101

Query: 788 CHKIADVNF 796
             K   +N 
Sbjct: 102 QIKANSINV 110


>gi|291239613|ref|XP_002739717.1| PREDICTED: kinesin family member 3B-like, partial [Saccoglossus
            kowalevskii]
          Length = 1973

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 704  EIMLLYIVSESSIRAGIRRIEAITGQRARS----HLMGQDEKLKSLASFLKVSQGNVVGR 759
            + ++L    ES       R+EA +           +  + +++      LK  + ++  +
Sbjct: 1207 QCLILKAEKESLNAKIEERLEATSNLEVLRKDLQAIKKEKDEVVEQCLILKAEKESLNAK 1266

Query: 760  VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
            +EE  E    L+ +    +     +D    +
Sbjct: 1267 IEERLEATSNLEALKKDLQAMEKEKDEVVEQ 1297


>gi|224050821|ref|XP_002198408.1| PREDICTED: nucleobindin 2 [Taeniopygia guttata]
          Length = 455

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 5/118 (4%)

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVS 752
            HV +  +I    +V+         + E +    +   L  Q    +++LK   + +   
Sbjct: 299 EHVMNEVDINKDRLVTLEEFLRATEKKEFL-EPDSWETLDQQQLFTEDELKEFENHISQQ 357

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           +  +  + EE+ ++  +LQ  H + + Q         ++                ELK
Sbjct: 358 EDELRKKAEELQKQKEELQRQHDQLQAQKQELQQVVKQMEQKKLQQGSPPAGPGGELK 415


>gi|255563653|ref|XP_002522828.1| DNA binding protein, putative [Ricinus communis]
 gi|223537912|gb|EEF39526.1| DNA binding protein, putative [Ricinus communis]
          Length = 235

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 24/52 (46%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           +L+  A  LK S  ++  +++E+  E  +L+    + K++    +     + 
Sbjct: 124 QLRGEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKVEKEKLEQQLKAVN 175


>gi|221059281|ref|XP_002260286.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193810359|emb|CAQ41553.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 1416

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV----- 794
            K+K L   L   +      VE++ +E   L++ + K K +L + D    K+ +      
Sbjct: 845 NKIKELEEKLTTEKKQHKISVEKLRKEIENLKIENEKLKTELKISDEYRSKLENYQQKTI 904

Query: 795 -----NFMSHI-ISEVDSKEL 809
                N +    +   D K L
Sbjct: 905 MKLATNVIQEKMVKNADGKRL 925


>gi|281350394|gb|EFB25978.1| hypothetical protein PANDA_019605 [Ailuropoda melanoleuca]
          Length = 1636

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 729  QRARSHLMGQDEKLKSL------ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            +RA +     ++  + L         L     +++ R+E +    + L++   + +    
Sbjct: 1012 ERANNFEHHIEDLTRQLRNSTFQCEKLSSDNEDLLARIETLQSNAKLLEVQILEVQKAKA 1071

Query: 783  VED--LSCHKIADVNFMSHIISEVD 805
            V D  L   K+     +    S V+
Sbjct: 1072 VADKELEAEKLQKEQKIKEHASSVN 1096


>gi|303287745|ref|XP_003063161.1| dynein heavy chain [Micromonas pusilla CCMP1545]
 gi|226454993|gb|EEH52297.1| dynein heavy chain [Micromonas pusilla CCMP1545]
          Length = 4490

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 56/158 (35%), Gaps = 24/158 (15%)

Query: 697  THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            TH+   G + +    +        RR   +T +   S + G  +      + +K     +
Sbjct: 2986 THM---GFVHVAVTRACKEYFEKFRRNVYVTPKSYLSFISGYRKLYADKLAEVKTLADKI 3042

Query: 757  VGRVEEIWE---EYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISEVDSKELKSV 812
               + ++++   + + +Q+   ++   L V      ++  +++  + I            
Sbjct: 3043 NSGLTKLFDAKADVKTMQIDLTQKNKDLAVAQADAAELLKEISASTAIAE---------- 3092

Query: 813  MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
                ++K +  +I+       KKA+ +  V ED     
Sbjct: 3093 ----KEKAKVAVIV---EGVTKKANEIAAVKEDAEKDL 3123


>gi|145534275|ref|XP_001452882.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420581|emb|CAK85485.1| unnamed protein product [Paramecium tetraurelia]
          Length = 820

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 76/308 (24%), Gaps = 2/308 (0%)

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
            F L     L  + +++    +    +    +   L+   +                IWF
Sbjct: 350 FFDLQKQEILNQNDVEEKSRQQYCDILLQQCYWLLLDVSDAYDVFEQTQFQKDRDFYIWF 409

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
           +LK  + + +F+ Y+              L         + VS  +  I+Q+ + +    
Sbjct: 410 TLKTTHCSDEFVVYERSDQESKKAFFHWKLIDLHENIPQSTVSLRINIILQRYDYI--LS 467

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
              K +        Y      L      I      +          +      +      
Sbjct: 468 ELYKYQNQCLSQVEYFILDTVLTALKMKIQKNATAEEQKKNIIDNLVNYTQNKLPLVSCL 527

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
                   ++         NH    L+       L     + G     + +         
Sbjct: 528 LMSVSTYNVEAIANLLQKTNHVTQVLMDKNFRENLEVIFGKEGLLNITNEMVHLFFEKSL 587

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
             S +    +   +  + Q     T ++ + D ++     +L       +      Y + 
Sbjct: 588 HNSLKEFQQQLEKSSTMNQINDCHTVLILKLDEMSIYLKQILNQYTETLLETAIYLYHET 647

Query: 687 GVHSSALC 694
            +     C
Sbjct: 648 QLVYILSC 655


>gi|12655860|gb|AAK00628.1| ninein isotype 1 [Homo sapiens]
          Length = 2029

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 58/136 (42%), Gaps = 12/136 (8%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1430 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1489

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF---------MSHIISEV--DS 806
             +VE +  E  KLQ  ++  + ++   +     I+++           M      V  ++
Sbjct: 1490 QKVELLRYESEKLQQENSILRNEITTLNEE-DSISNLKLGTLYWNSGRMRQKTETVKQEN 1548

Query: 807  KELKSVMDALQKKIQS 822
              ++ +++ L+K+I  
Sbjct: 1549 AAVQKMVENLKKQISE 1564


>gi|254578970|ref|XP_002495471.1| ZYRO0B12144p [Zygosaccharomyces rouxii]
 gi|238938361|emb|CAR26538.1| ZYRO0B12144p [Zygosaccharomyces rouxii]
          Length = 2005

 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 11/100 (11%)

Query: 732  RSHLMGQDEKLKSLA-------SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
               L  + ++L           + LK        +++ I E  ++L+    +++      
Sbjct: 1078 LEKLAKEKQELNDAKGSNEKELNKLKKDLEGKEQKLKSITERAQELEKTLDEQRNSNADS 1137

Query: 785  DLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQS 822
            +    +  ++  + H   E   +SKEL++ +D L+ K +S
Sbjct: 1138 ERKLKE--NIKALEHQKKEAISNSKELENELDQLKNKHKS 1175


>gi|118785512|ref|XP_314710.3| AGAP008614-PA [Anopheles gambiae str. PEST]
 gi|116127772|gb|EAA10063.3| AGAP008614-PA [Anopheles gambiae str. PEST]
          Length = 473

 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 15/121 (12%)

Query: 685 DGGVHSSALCGGTHVSSTG-EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           D G          H   +          S+  + A  +R+ A+  +R    +     + +
Sbjct: 201 DSGHFEDITTSSIHSKDSYVHTQDRACGSDEEMDAERKRLVALYEERIEELIKQHQSEEQ 260

Query: 744 SLASFLKVSQGNVVGRV--------------EEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            L +        ++ ++              E+  E  R+L+    K + QL  ++   +
Sbjct: 261 QLRTSNNDRFEVLLQKLAESNTRYCDLVPDYEQAKERIRELEKQLEKLQAQLQEQEDKAN 320

Query: 790 K 790
           K
Sbjct: 321 K 321


>gi|4249697|gb|AAD13770.1| myosin heavy chain [Rana catesbeiana]
          Length = 708

 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           GQ        +   L +    LK S    + +VE +  E + LQ   +    Q+     S
Sbjct: 236 GQAELEASQKEARSLSTEIFKLKNSYEEALEQVETLKRENKNLQQEISDLTEQIGENGKS 295

Query: 788 CHKIADVN 795
            +++    
Sbjct: 296 INELEKAR 303


>gi|91772936|ref|YP_565628.1| phosphoserine phosphatase [Methanococcoides burtonii DSM 6242]
 gi|91711951|gb|ABE51878.1| Hypothetical protein Mbur_0936 [Methanococcoides burtonii DSM 6242]
          Length = 285

 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + A      +   L + AS L   + ++    +E+  E ++ + +  +   Q+       
Sbjct: 13  KAASEEYKEKRNALNAEASTLAAKRNDLNKSTKELINEAQEYKKLRDENNEQVKENKAKR 72

Query: 789 HKIA-DVNFMSHIIS---------EVDSKELKSVMDAL 816
            +I    N +   +              K+++  +D L
Sbjct: 73  DEINAKANEVFAKVDALRAASNLTGPSIKDIRKEIDRL 110


>gi|312863705|ref|ZP_07723943.1| RecF/RecN/SMC N-terminal domain protein [Streptococcus vestibularis
           F0396]
 gi|311101241|gb|EFQ59446.1| RecF/RecN/SMC N-terminal domain protein [Streptococcus vestibularis
           F0396]
          Length = 650

 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 20/128 (15%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            +  + + L +  + +KV   +   +VE +  + + LQ      K+      L   K+  
Sbjct: 145 FIKPELDALTAEINQIKVQLSDSEAKVEALKTKRKALQKELDDLKVDGENARLQEQKLDL 204

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
            +     +SEV+    ++++D+ ++                 A++     +D  ++F A 
Sbjct: 205 EH--QQALSEVEKN--RTLVDSFKQD----------SQGTDGANL-----QDKAEQFKA- 244

Query: 854 DLARLSAK 861
           +LA++++K
Sbjct: 245 ELAQIASK 252


>gi|282882627|ref|ZP_06291244.1| carboxyl- protease [Peptoniphilus lacrimalis 315-B]
 gi|281297538|gb|EFA90017.1| carboxyl- protease [Peptoniphilus lacrimalis 315-B]
          Length = 385

 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           + +   +  ++  + ++V  +  + +   K     + ++ Q+ +  +   ++ ++ ++  
Sbjct: 144 DNITEASKAIRGEKDSLVKLL--VLKNGSKKPKEISVKRDQVKIASVIEKELGEIGYIGI 201

Query: 800 IISEVDS-KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            + + D+ KE    +D L KK +SGII+ +  +        + +
Sbjct: 202 TVFDEDTDKEFGKALDDLVKKNKSGIILDLRGNPGGVVDAAVGI 245


>gi|194222786|ref|XP_001916889.1| PREDICTED: golgin B1, golgi integral membrane protein [Equus
            caballus]
          Length = 3352

 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE---------YRKLQLIHAKRKL 779
            QRA   L  + + L      LK S   +  ++  + EE          +  +    +   
Sbjct: 2588 QRASVALQEERQGLSKETESLKASISQLKKQLTALQEEGTLGVFQAQLKAKEEEVQRLNT 2647

Query: 780  QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             L+       ++ +        +   SK++  + D L+K+++
Sbjct: 2648 TLSSSQKRITELEEDLVRVQKEA---SKKVGEIEDKLKKELK 2686


>gi|164708137|gb|ABY67191.1| pneumococcal surface protein A [Streptococcus pneumoniae]
          Length = 472

 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + L   +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 221 IEAKLNKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 274

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARL 858
            + EL++ +  L+K+I +  I+L G   E         T  L ++  A   +LA+ 
Sbjct: 275 KADELQNKVADLEKEISNLEILLGGADPEDD-------TAALQNKLAAKQAELAKK 323


>gi|163784051|ref|ZP_02179006.1| purine NTPase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880678|gb|EDP74227.1| purine NTPase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 890

 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L   ++        +   Q  +  ++E++      L+    K +  +  E+    KI
Sbjct: 613 IKQLKESEKLYVETKKEVSQKQ-QIASQIEKLQANLENLEKETEKLRNNIKDENQIQEKI 671

Query: 792 A 792
            
Sbjct: 672 N 672


>gi|237742517|ref|ZP_04572998.1| DNA repair protein recN [Fusobacterium sp. 4_1_13]
 gi|229430165|gb|EEO40377.1| DNA repair protein recN [Fusobacterium sp. 4_1_13]
          Length = 558

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-EIWEEYRKLQLIHAKRKLQLNV-EDL 786
           +  +  L     +   LA  L  S+  +  ++E E+  E + L +  AK K+Q+N  E +
Sbjct: 349 RELKQELTKVKSEYDKLAEKLSNSRKEIAVKIENELLNELKFLNMEDAKLKVQINKLERM 408

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVM 813
           +     DV F        D K L  + 
Sbjct: 409 TSDGYDDVEFFISTNVGQDLKPLNKIA 435


>gi|225871438|ref|YP_002747385.1| cell surface-anchored protein [Streptococcus equi subsp. equi 4047]
 gi|225700842|emb|CAW95564.1| putative cell surface-anchored protein [Streptococcus equi subsp.
           equi 4047]
          Length = 626

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L     +   L+  L   +  +  +++E+ ++  +      K K +L     +  ++
Sbjct: 294 LKDLQDSASQGSELSKQLLKEKEELTTKLQELQKQAEEKTTEIEKLKQELEANKQNSGQL 353

Query: 792 A--------DVNFMSHIISEVDSKELKSVMDALQKKIQ 821
                     +N +   + + +  ELK   + L+++ +
Sbjct: 354 GQQEQKLQEQLNKVQKELKQKEM-ELKQAQEQLKQEQK 390


>gi|225848983|ref|YP_002729147.1| UTP-glucose-1-phosphate uridylyltransferase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644650|gb|ACN99700.1| UTP-glucose-1-phosphate uridylyltransferase [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 296

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITG--QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           +  +++ + E ++ +GI  I  +TG  +RA         +L+ +    K  +   + ++ 
Sbjct: 34  DKPIIHYIVEEAVNSGIETIIFVTGRHKRAIEDYFDYYPELEQVLK--KAGKEKEIEKLR 91

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHK-IADVNFMS----HIISEVDSKELKSVMDAL 816
           +I     +   I  K +L L    L+  + + D  F+      II   ++  +K ++D  
Sbjct: 92  QI-SNMAEFVYIRQKEQLGLGHAVLTAERLVGDEPFVVLLGDEIIKNDENPGIKQLIDIY 150

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +    +I  + + KE  +   IV  +++++    V+
Sbjct: 151 Y-QFGKSVIGTMEVQKEDVSKYGIVAGKEVINGIKLVE 187


>gi|194901876|ref|XP_001980477.1| GG18576 [Drosophila erecta]
 gi|190652180|gb|EDV49435.1| GG18576 [Drosophila erecta]
          Length = 1128

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 724 EAITGQ-RARSHLMGQDEKL----KSLASFLKVSQG---NVVGRVEEIWEEYRKLQLIHA 775
           EA+ G+  A S L  Q E      + L   L  SQ      + +++++     +L+  +A
Sbjct: 424 EALKGRGDAISRLQEQHEAEVKRQRDLEVQLSNSQQAAQEKLQKIKQLQSRVEELEKANA 483

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--LKSVMDALQKKIQS 822
             +  + +   +  +  +++ +  +    + K   L+++   L+KK+Q 
Sbjct: 484 DAQSDV-LSTSTISRAEELSRLRELDEGYEEKYHKLRAIAAKLKKKLQE 531


>gi|168210302|ref|ZP_02635927.1| partition protein [Clostridium perfringens B str. ATCC 3626]
 gi|170711642|gb|EDT23824.1| partition protein [Clostridium perfringens B str. ATCC 3626]
          Length = 397

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++A  +   +++ +K   S LK     +   +E+  EE +KL+    + +L+  +E+   
Sbjct: 247 EKALEY-KEREKLIKE-NSTLKSK---LNSNIEKTNEERKKLEGQL-RIELEKELENKYA 300

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            K+  +       ++  +K LK  +  L+      +
Sbjct: 301 DKLNSIKDEVKKQTDEKAK-LKDEISKLKANAPKDV 335


>gi|149060540|gb|EDM11254.1| golgi autoantigen, golgin subfamily b, macrogolgin 1, isoform CRA_b
           [Rattus norvegicus]
          Length = 2168

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-QLNVED 785
           T +     L   ++ +  L   +      +  + E + EE +  +    K KL       
Sbjct: 7   TQKDVLDRLADAEKLVLELKDIISKQDAQLQQKDEALQEEKKGAESKIKKIKLHAKAKIT 66

Query: 786 LSCHKIADVN 795
               +I ++ 
Sbjct: 67  SLNKQIEELK 76


>gi|146303545|ref|YP_001190861.1| SMC domain-containing protein [Metallosphaera sedula DSM 5348]
 gi|145701795|gb|ABP94937.1| SMC domain protein [Metallosphaera sedula DSM 5348]
          Length = 858

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           R+    +    +L+   S L+    ++  R+E+  EE +KL+   AK K ++   +    
Sbjct: 172 RSHEIYLENLRRLQEEKSSLEREISSLTERMEKTREELQKLESEEAKLKDKIKDLEEKQR 231

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQK 818
           +  DV      ++E    EL+ VM  L+ 
Sbjct: 232 EY-DVLLSEKRLAE---DELQRVMAELRN 256


>gi|33331993|gb|AAQ11212.1| major surface protein 3 [Anaplasma marginale str. South Idaho]
          Length = 399

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 737 GQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             DE    L S L + +   +     V++  E  ++L+    + +L          K+ +
Sbjct: 45  NADEIEGELKSALGLERLEKLAELELVKQRLESMKELEKKIEEAQLTAEELREMREKLKE 104

Query: 794 VNFMSHIISEVDSKELKSV-----MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
           +          D   LK        D L+K ++     ++   + KK+ ++  +   L  
Sbjct: 105 LAGR-----GEDPAGLKKAIEEANADELKKGLKE----VLKTLEGKKSELVKGLEGHLEK 155

Query: 849 RFNAVDLA 856
           RF    LA
Sbjct: 156 RFKKGALA 163


>gi|118382187|ref|XP_001024253.1| Viral A-type inclusion protein repeat containing protein
           [Tetrahymena thermophila]
 gi|89306020|gb|EAS04008.1| Viral A-type inclusion protein repeat containing protein
           [Tetrahymena thermophila SB210]
          Length = 3714

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIAD 793
           L  Q++KL+ +   LK     +  ++++   E ++++    K R+ +   E+    +   
Sbjct: 914 LKQQEQKLEIIIDDLKNKIDKLNQQIKDQQYENKEVKFELEKCRESKKEQEEKLQKQKDK 973

Query: 794 VNFMSHIISEVDS 806
              +   I+E+++
Sbjct: 974 NKELKQKITEIEA 986


>gi|70929255|ref|XP_736716.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56511488|emb|CAH83039.1| hypothetical protein PC300286.00.0 [Plasmodium chabaudi chabaudi]
          Length = 282

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + +++ +     + K     +K    N+V +V +  ++        AK+ +++  E    
Sbjct: 17  KESKNSVDKLKNEAKKGVEAVKEKSENIVNKVTKAAKDNEDKLKKEAKKGVEIVKEKTET 76

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI--IMLVGISKEKKASVLI-----V 841
                 N +     +++++  K  ++A+++K ++ +  +       E K  +        
Sbjct: 77  AIDKVANVVKDGAIKLENEA-KKAVEAVKEKSENAVDKVTKAAKDNEDKLKIEAKKGIES 135

Query: 842 VTEDLLDRF-NAVDLARLSAKVL 863
           V E   +    AV++ +  A  L
Sbjct: 136 VKEKSENAIDKAVNVVKDGANKL 158


>gi|14590388|ref|NP_142454.1| hypothetical protein PH0476 [Pyrococcus horikoshii OT3]
 gi|3256881|dbj|BAA29564.1| 356aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 356

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             +     ++K   + +   +     R+E   +    L+    + K ++N+ +    K+ 
Sbjct: 56  EKIEEFRREIKEAEARINNVKEETTKRIEGFDKRLSHLEKEFKEIKGKMNILERLYDKVK 115

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +   +S  I+ ++  +L+     +++ ++S
Sbjct: 116 E---LSESINSIEPDKLRE---DVKESVKS 139


>gi|85098057|ref|XP_960568.1| hypothetical protein NCU05606 [Neurospora crassa OR74A]
 gi|28922061|gb|EAA31332.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 566

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 48/155 (30%), Gaps = 16/155 (10%)

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
               V+    D  +         HV  T           +SI    RR++    Q     
Sbjct: 119 PFMYVNDGVCDHELCCDGTDEALHVGGTK-----CENRCASIGKEYRRLQEERRQSKERS 173

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCHKI-- 791
              +   +K  +      +  V  +V  + EE   L++  A+ + +   VE     K+  
Sbjct: 174 AKQRRTLVKEASEL----RRRVESKVASLKEEIANLEVQKAELQKKYDEVERAERGKVVK 229

Query: 792 ----ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                    +   +++    EL+  +D +  +   
Sbjct: 230 APGEGGKLGVLVGLAKKRVDELRDTLDKVLDQRDD 264


>gi|34764252|ref|ZP_00145101.1| DNA repair protein recN [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27885973|gb|EAA23300.1| DNA repair protein recN [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 558

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-EIWEEYRKLQLIHAKRKLQLNV-EDL 786
           +  +  L     +   LA  L  S+  +  ++E E+  E + L +  AK K+Q+N  E +
Sbjct: 349 RELKQELTKVKSEYDKLAEKLSNSRKEIAVKIENELLNELKFLNMEDAKLKVQINKLERM 408

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVM 813
           +     DV F        D K L  + 
Sbjct: 409 TSDGYDDVEFFISTNVGQDLKPLNKIA 435


>gi|329766283|ref|ZP_08257830.1| hypothetical protein Nlim_1632 [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137185|gb|EGG41474.1| hypothetical protein Nlim_1632 [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 508

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 14/179 (7%)

Query: 733 SHLMGQDEKLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
                  E++  +    K S     +  RVE+     R    +  K   +++       K
Sbjct: 114 EQTQRLQEEVTKINELQKTSPKTPELSQRVEDSMNAMRNNSQMIIKIAQRIDEVRDDLRK 173

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGII---MLVGISKE-KK----ASVLIVV 842
           ++        I   D   L++ +D + KK  +  +   ++  +++E  K     + +   
Sbjct: 174 VSGKTDSLADI-GKDIDNLRNSIDEINKKSDNMEVSSQIVTSLNQELGKIKDDVNSVSKT 232

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGG---GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           + +L     A+D   + A  +   GG   G +   A   G   + +D ++  +   L K
Sbjct: 233 SSELEAIKVAIDTIAVKASKIDSLGGVIEGLKQQFATIAGKADSASDLSMNSIKEVLGK 291


>gi|301300597|ref|ZP_07206789.1| phage minor structural protein GP20 [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851784|gb|EFK79476.1| phage minor structural protein GP20 [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 188

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--------KLQLIHAKRKLQLNVEDL 786
           L  +D++L  L    K +  ++  +++++  + +        KL       +++  + + 
Sbjct: 48  LDERDQQLVDLQKNSK-NVDDLNEKIKQLQADNQKANEDWQNKLATQTKNFRIETALREA 106

Query: 787 SCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
               +  V  F+      VD   LK + D ++   +S   +      E K ++
Sbjct: 107 RAKNVKAVLPFIDTEKVTVDGDNLKGLDDQIKAIQKSDSYLFEEGKPEPKINI 159


>gi|297479684|ref|XP_002691009.1| PREDICTED: myosin VC [Bos taurus]
 gi|296483167|gb|DAA25282.1| myosin VC [Bos taurus]
          Length = 1605

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 14/108 (12%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            Q A  HL  Q E    + S  +     +     ++ EE    + +  K + Q+     + 
Sbjct: 1149 QEASEHLRKQSETENEVKSSFQQEASRLTMEKRDLEEELDMKERVIKKLQDQVKTLTKTI 1208

Query: 789  HKIADVNF----------MSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             K  DV+           + +   + ++K +++++  L+     G+++
Sbjct: 1209 EKANDVHLSSGPKEYLGMLEYKRED-EAKLIQNLILDLK---PRGVVV 1252


>gi|296126128|ref|YP_003633380.1| MATE efflux family protein [Brachyspira murdochii DSM 12563]
 gi|296017944|gb|ADG71181.1| MATE efflux family protein [Brachyspira murdochii DSM 12563]
          Length = 616

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVS--QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           G+R + ++     KL  +   +K+   +   + ++E++ E   K +     R+L+     
Sbjct: 480 GKR-KDYIQKMRNKLSKIKDPVKLVLFREKEIEKIEKMQEREEKAKKREEMRRLERAEWK 538

Query: 786 LSCHKIADVN 795
           +   +I +  
Sbjct: 539 MQLEEIKEKR 548


>gi|224368900|ref|YP_002603062.1| putative plasmin-sensitive surface protein (Pls family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691617|gb|ACN14900.1| putative plasmin-sensitive surface protein (Pls family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 567

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             ++++L   A+  K  +  +     +   E ++L    AK+  +  + D +  +  ++ 
Sbjct: 267 KAEEKRLADEAAK-KAEEKRLADEAAK-KAEEKRLADEAAKKAEEKRLADEAAKRAIEIK 324

Query: 796 FMSHIISEVDSKELKSVMDALQKKI-------QSGIIMLVGISKEKKASVLIVVTEDLLD 848
            +   I+E ++KE +S    +QK+        +    +L GI+     S+ +  + +   
Sbjct: 325 RVIREIAEQEAKEAESTASQVQKQNNTSDAKPKPMAAILAGIAFVLLISLAVGASINNSK 384

Query: 849 RF 850
           RF
Sbjct: 385 RF 386


>gi|153607609|dbj|BAF74060.1| merozoite surface protein-1 [Plasmodium cynomolgi]
          Length = 1833

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 725  AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLN 782
             +T     ++     +  K     +      V   + +  EE +K++   +K   K QLN
Sbjct: 1550 MVTANDGLAYYQKMGDLYKKHLDEVNAQIKEVEANINKHDEEIKKIESEASKANDKNQLN 1609

Query: 783  VEDLSCHK 790
             +     K
Sbjct: 1610 AKKEELQK 1617


>gi|145487161|ref|XP_001429586.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396679|emb|CAK62188.1| unnamed protein product [Paramecium tetraurelia]
          Length = 938

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 732 RSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE-------YRKL--------QLIHA 775
              L  + + L  L   +       ++  +E + ++        +KL        +    
Sbjct: 128 LEELRKKAKILDDLQKKIGAKAPDELLKELENLKKKAQQFDDINKKLNGKNFSDLEKELE 187

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKE 833
           K + + +  D    + ++ + +   + ++  K  EL  +   L  +      +L  + + 
Sbjct: 188 KLRQKADKFDEISKQFSNPSDIQKELDQLKKKAAELDKMKSQLNNQNPDQ--LLKNLDEN 245

Query: 834 KK 835
           KK
Sbjct: 246 KK 247


>gi|119620504|gb|EAX00099.1| KIAA1212, isoform CRA_a [Homo sapiens]
 gi|119620505|gb|EAX00100.1| KIAA1212, isoform CRA_a [Homo sapiens]
          Length = 1788

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K  L+  
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSF 682

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 683 KNLTFQLESLEKENSQLDEENL-ELRRNVESLK 714


>gi|118095710|ref|XP_423114.2| PREDICTED: similar to Testis expressed sequence 9 [Gallus gallus]
          Length = 431

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR----KLQLNVE 784
            RA         +L  L    K      +  +EE+  E +KLQ    +     K QL + 
Sbjct: 340 NRALEEAERYKAELNKLKQSNKDVANQELKIIEELKAENKKLQKQKGELIAGFKKQLKLI 399

Query: 785 DLSCHK 790
           D+   +
Sbjct: 400 DILKRQ 405


>gi|56692777|ref|YP_164235.1| hypothetical protein ORF140R [Singapore grouper iridovirus]
 gi|42517489|gb|AAS18155.1| unknown [Singapore grouper iridovirus]
          Length = 304

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 8/140 (5%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW--EEYRKLQLIHAKRKLQLNVE-DL 786
            A +    +  +   LA+    +    V + ++     E        A +K +  +E   
Sbjct: 155 EAANEATKKSVEASQLANEALENSEEAVKKADDALCASENASRSSAIASQKTEKALETAA 214

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
              K A+V  +   I+   +  +K   D  ++K ++    L   S  KKA  +    E+ 
Sbjct: 215 EAAKSAEVAALMAKIATSSANAVKDAADEAREKAEAAN--LAADSAFKKADSVAGRAEEA 272

Query: 847 LDRFNAVDLARLSAKVLGGG 866
             +  AV+     A  + G 
Sbjct: 273 EKK--AVEAVAK-ADYVVGK 289


>gi|118395396|ref|XP_001030048.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila]
 gi|89284335|gb|EAR82385.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila SB210]
          Length = 3812

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 14/105 (13%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL------------ 779
                  Q    K+ A  LK +  N V ++ E+  +  ++     + K             
Sbjct: 3491 VDDQNKQINSEKAKADELKSTIENQVQKISELQNKNNQISKELNQEKASAQDLKEQFNNQ 3550

Query: 780  QLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQS 822
            +L +E      I   N       ++    K L+S ++ L+++   
Sbjct: 3551 KLVLEQQQKENINTSNNFKETNKQLQEQVKLLQSEINQLKQQNDK 3595


>gi|326437900|gb|EGD83470.1| hypothetical protein PTSG_04078 [Salpingoeca sp. ATCC 50818]
          Length = 1656

 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYRKLQLIHA 775
           +RR   ++   +   L      L +L   L       + R    V+ + +E  KLQ ++ 
Sbjct: 319 MRR---LSKHNSIEELSEDANDLNALRKRL-AELEEALARTTTEVKALVDERTKLQKMYD 374

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + K + +  +    + A        +   +   L+ + + L+KK+  
Sbjct: 375 EEKARTSELEAELQEAAASQGDQASLQR-ELHTLRDMNNDLKKKVSD 420


>gi|325478645|gb|EGC81757.1| pyruvate, phosphate dikinase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 876

 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 17/121 (14%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-----RKLQL-----IHAKRKLQLN 782
             L   D+++  LA  LKV    V  R+ E+ E       R L+L       A+ + +  
Sbjct: 625 EFLPRGDQEIMDLAHELKVEPARVKERIVELQEVNPMLGFRGLRLAVIYPEIARMQARAI 684

Query: 783 VEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           ++         +  +  I+  +  D+KELK+V + ++++I+      V   K KK   L+
Sbjct: 685 IQAAIHCHEDGIKVVPEIMIPLSSDAKELKTVKETVREEIEK-----VFEEKGKKIDYLL 739

Query: 841 V 841
            
Sbjct: 740 G 740


>gi|218677078|ref|YP_002395897.1| putative methyl-accepting chemotaxis protein [Vibrio splendidus
           LGP32]
 gi|218325346|emb|CAV27409.1| putative methyl-accepting chemotaxis protein [Vibrio splendidus
           LGP32]
          Length = 746

 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 12/148 (8%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA     A        +++++LA+  + S   +   +  + +E + + ++  + + Q N
Sbjct: 598 IEAARAGEAGRGFAVVADEVRNLANRTQGSTEEIRSMLARLEQETQSIVVLMEQSQNQAN 657

Query: 783 VEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDA---LQKKIQSGIIML--VGISKE 833
                        +++N    +I++++  ++ S  +    + ++I   ++++    +   
Sbjct: 658 NTKSETEAAHQALSEINQAIEVINDMN-NQIASAAEEQSSVSEEINRNVVIINDTAVEVM 716

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAK 861
              +  + ++ +L     A DL    +K
Sbjct: 717 DTMTSSVAISNELT--VKAGDLHGELSK 742


>gi|237843445|ref|XP_002371020.1| zinc finger (C3HC4 RING finger) protein, putative [Toxoplasma
           gondii ME49]
 gi|211968684|gb|EEB03880.1| zinc finger (C3HC4 RING finger) protein, putative [Toxoplasma
           gondii ME49]
 gi|221502276|gb|EEE28009.1| zinc finger (C3HC4 RING finger) protein [Toxoplasma gondii VEG]
          Length = 1027

 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 8/78 (10%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH--IISEVDSKE 808
            +   ++  +E +  + R+ +   A+ + +    +    ++  +  ++H  I+      E
Sbjct: 422 TAPEEILEHLESLQRKLREREKEIARLQEERAKAEKLTAEVKILRTLNHELILQSSPYVE 481

Query: 809 LKSVMDALQKKIQSGIIM 826
           L+        K++  +++
Sbjct: 482 LQQQA----AKLEEAVVV 495


>gi|208434029|ref|YP_002265695.1| hypothetical protein HPG27_54 [Helicobacter pylori G27]
 gi|208431958|gb|ACI26829.1| hypothetical protein HPG27_54 [Helicobacter pylori G27]
          Length = 244

 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
            HL  + +KL+S    L+ S   ++  +E+I EE  +L+   A  K     + + 
Sbjct: 142 QHLTDKLKKLESAQKSLENSNDQLLQAIEKIAEEKTELEREMAHLKSLEATDKIE 196


>gi|195018507|ref|XP_001984794.1| GH14831 [Drosophila grimshawi]
 gi|193898276|gb|EDV97142.1| GH14831 [Drosophila grimshawi]
          Length = 1062

 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 722 RIEAITGQRARSHLMGQDEKL---KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           R      +R   +   Q  +L   K L   L V +  +   + E+ E  +KL+    K +
Sbjct: 896 RASMRCLERELENAREQKIELDVRKELCDKLDVEKEKLNAELNELNEIRKKLEKECEKLR 955

Query: 779 LQLNVEDLSCH 789
            +L  + +   
Sbjct: 956 SELQQKSVLNQ 966


>gi|154413468|ref|XP_001579764.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121913974|gb|EAY18778.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 3369

 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            + +  ++ ++ SL    K  +  +    E++     + +   ++ +  +N +D     + 
Sbjct: 1642 NEVNAKEAEIVSLNEIQKKKEEEISSLQEKLNSTIAEKEKEISELQSSINDKDKEISSLQ 1701

Query: 793  DVNFMSHIISEVDSK--ELKSVMDALQKKIQS 822
            +   ++   ++V++K  E+ S+ D L++K + 
Sbjct: 1702 EK--VNIENNDVNTKETEISSLNDQLKQKDEE 1731


>gi|119586099|gb|EAW65695.1| ninein (GSK3B interacting protein), isoform CRA_d [Homo sapiens]
          Length = 1767

 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1225 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1284

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQL----NVEDLSCHKIADVNF----MSHIISEV--DSK 807
             +VE +  E  KLQ  ++  + ++      + +S  K+  +N     M      V  ++ 
Sbjct: 1285 QKVELLRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA 1344

Query: 808  ELKSVMDALQKKIQS 822
             ++ +++ L+K+I  
Sbjct: 1345 AVQKMVENLKKQISE 1359


>gi|114654422|ref|XP_510128.2| PREDICTED: thyroid hormone receptor interactor 11 [Pan troglodytes]
          Length = 1979

 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 23/115 (20%)

Query: 731  ARSHLMGQDEKL--------KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
               H   +++ +        K L +  K +  N+ G+V  + E   +             
Sbjct: 1679 VLEHFQQEEKAMYSAELEKQKQLIAEWKKNAENLEGKVISLQERLDEANAALDSASRLTE 1738

Query: 783  VEDLSCHKIADVNFMSHIISEVDSKELK-SVMDALQKKIQSGIIMLVGISKEKKA 836
              D+   +I ++             EL+  ++D +QKK+ S     +  S E K 
Sbjct: 1739 QLDVKEEQIEELK---------KQNELRQEMLDDVQKKLMS-----LANSSEGKV 1779


>gi|86144983|ref|ZP_01063315.1| putative methyl-accepting chemotaxis protein [Vibrio sp. MED222]
 gi|85837882|gb|EAQ55994.1| putative methyl-accepting chemotaxis protein [Vibrio sp. MED222]
          Length = 746

 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 12/148 (8%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA     A        +++++LA+  + S   +   +  + +E + + ++  + + Q N
Sbjct: 598 IEAARAGEAGRGFAVVADEVRNLANRTQGSTEEIRSMLARLEQETQSIVVLMEQSQNQAN 657

Query: 783 VEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDA---LQKKIQSGIIML--VGISKE 833
                        +++N    +I++++  ++ S  +    + ++I   ++++    +   
Sbjct: 658 NTKSETEAAHQALSEINQAIEVINDMN-NQIASAAEEQSSVSEEINRNVVIINDTAVEVM 716

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAK 861
              +  + ++ +L     A DL    +K
Sbjct: 717 DTMTSSVAISNELT--VKAGDLHGELSK 742


>gi|325284959|ref|YP_004260749.1| Protein translocase subunit secA [Cellulophaga lytica DSM 7489]
 gi|324320413|gb|ADY27878.1| Protein translocase subunit secA [Cellulophaga lytica DSM 7489]
          Length = 1120

 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 39/109 (35%), Gaps = 4/109 (3%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKV----SQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           ++A  G +A+  +      +  + +F +     S   +  +  E  E+ +       ++ 
Sbjct: 8   LKAFVGDKAKKDVKQLQPIVDKIKAFEQSLEAISLDELRAKTVEFKEKLKADTKELNEQI 67

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             L +E  S   I     +   I  +  +  K++  +L   +     ++
Sbjct: 68  EALKIEVESSTDIDKNEDLYSEIDRLQEEVYKTLEKSLSDLLPEAFAVV 116


>gi|309364375|emb|CAR98726.1| hypothetical protein CBG_25521 [Caenorhabditis briggsae AF16]
          Length = 746

 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG------RVEEIWEEY 767
            +     R  E +    A+  L   + ++K+L   L   +  +        +++E  +E 
Sbjct: 498 KNCEKCFRTCEML--NEAKKELKSNENRIKNLEKKLSTKEKKLEEFEDQKQKIQEKEKEI 555

Query: 768 RKLQLIHAKRKLQ----LNVEDLSCHKIADVNFMSHIISEVD 805
           ++      + K +    L + + +   I++V  ++  I+E++
Sbjct: 556 QEKLEEIEQLKGKVEKSLKIAEDNGKLISEVTKLTDSIAELN 597


>gi|73969657|ref|XP_865382.1| PREDICTED: similar to Hook-related protein 1 isoform 4 [Canis
           familiaris]
          Length = 1774

 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 36/102 (35%), Gaps = 23/102 (22%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K      
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLK------ 676

Query: 785 DLSCHKIADVNFMSHIISEVDSK---------ELKSVMDALQ 817
                 +     ++  +  ++ +         EL+  +++L+
Sbjct: 677 ----KTLDGFKNLTFQLESLEKENSQLDEENLELRRNVESLK 714


>gi|297667607|ref|XP_002812065.1| PREDICTED: girdin [Pongo abelii]
          Length = 1870

 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K  L+  
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSF 682

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 683 KNLTFQLESLEKENSQLDEENL-ELRRNVESLK 714


>gi|147644956|sp|Q3V6T2|GRDN_HUMAN RecName: Full=Girdin; AltName: Full=Akt phosphorylation enhancer;
           Short=APE; AltName: Full=Coiled-coil domain-containing
           protein 88A; AltName: Full=G alpha-interacting
           vesicle-associated protein; Short=GIV; AltName:
           Full=Girders of actin filament; AltName:
           Full=Hook-related protein 1; Short=HkRP1
          Length = 1871

 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K  L+  
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSF 682

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 683 KNLTFQLESLEKENSQLDEENL-ELRRNVESLK 714


>gi|123480112|ref|XP_001323211.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121906071|gb|EAY10988.1| hypothetical protein TVAG_446900 [Trichomonas vaginalis G3]
          Length = 973

 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           H    ++ +K L+  LKVS+  +     +I E   KL+      K+Q    + S   I  
Sbjct: 810 HAEKANDLVKELSEKLKVSESQINEMKSQISELNLKLRKEEINGKVQAESFERSKQLIEA 869

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQ 821
                 +I + ++   +  +D L+ + +
Sbjct: 870 QTKAKLVIFDTNN---RVKIDELKHEHE 894


>gi|157123009|ref|XP_001659981.1| myosin v [Aedes aegypti]
 gi|108874567|gb|EAT38792.1| myosin v [Aedes aegypti]
          Length = 1792

 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 15/113 (13%)

Query: 715  SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
              +A IRR  A   +R    L  +   +  +    K     +  ++ E+ + Y +L   +
Sbjct: 903  KCQATIRRFLA---RRMFKRLKAEARTISHIQKMYKG----LENKIIELQQRYDQLSKEN 955

Query: 775  AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            A  K Q                ++    E D K LK     L++K +  ++++
Sbjct: 956  AALKKQNAEIPEMRQ-----KLVAMKQQENDLKALK---LQLEQKDEKLLVVI 1000


>gi|50897852|ref|NP_060554.3| girdin isoform 2 [Homo sapiens]
 gi|121582194|dbj|BAF44475.1| PKB/Akt-binding protein [Homo sapiens]
 gi|124376864|gb|AAI32737.1| Coiled-coil domain containing 88A [Homo sapiens]
          Length = 1843

 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K  L+  
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSF 682

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 683 KNLTFQLESLEKENSQLDEENL-ELRRNVESLK 714


>gi|118352843|ref|XP_001009692.1| IQ calmodulin-binding motif family protein [Tetrahymena
           thermophila]
 gi|89291459|gb|EAR89447.1| IQ calmodulin-binding motif family protein [Tetrahymena thermophila
           SB210]
          Length = 529

 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/95 (11%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G+  + +   Q + +   +   K     +  ++ +++ E    +  + + K ++   +  
Sbjct: 205 GEECKKYHELQQKLVSENSKLEKTK-EELNKKIGDLYVEQSLTEKENKQLKNKIEELETQ 263

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
              + + N       E + KEL      ++K+++ 
Sbjct: 264 LRNLNEKNTSKQ---EQNMKELM----VVKKQLEE 291


>gi|73973878|ref|XP_532220.2| PREDICTED: similar to EEA1 (Early Endosome Antigen, Rab effector)
           homolog family member (eea-1) [Canis familiaris]
          Length = 1405

 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 26/142 (18%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TGE +    + E + +  + R+     Q+         E L   A  LK +       +E
Sbjct: 832 TGEKLYQIKILEETHKQEVSRL-----QKRLQWYAENQELLDKDAIRLKEANEE----IE 882

Query: 762 EIWEEYRKLQLI----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           ++  E  KL+        ++K++L  +     KI D+      +  +           L+
Sbjct: 883 KLRLEVEKLKAESGNPSVQQKIRLKEKAADAKKIQDLERQVKEMEGI-----------LK 931

Query: 818 KKIQSG--IIMLVGISKEKKAS 837
           ++  +    ++L   +     +
Sbjct: 932 RRYPNSLPALILAASAAGDTVN 953


>gi|84391758|ref|ZP_00991660.1| ATPase involved in DNA repair [Vibrio splendidus 12B01]
 gi|84376471|gb|EAP93350.1| ATPase involved in DNA repair [Vibrio splendidus 12B01]
          Length = 435

 Score = 38.2 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 735 LMGQDEKLKSLASFLKVS--QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE----DLSC 788
           L  Q +K+ +    LK      ++   +E + E+  KL+  + K+  QL+      +L  
Sbjct: 315 LRQQSQKIIASVKALKSLDMTASLKSEIETLTEQLAKLESDNQKQAQQLSEATKHSNLLD 374

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            +I   +     + E+    L+++   +  +  S +I
Sbjct: 375 EQITKSDAHIKSLEEL-VDSLRNLGGKVANESDSDVI 410


>gi|301154128|emb|CBW30233.1| Disease resistance protein (CC-NBS-LRR) [Musa balbisiana]
          Length = 1067

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 29/142 (20%)

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS------ 806
           +  V  +++ + +  +  ++   + KLQL+V       +  V+ ++  + E D       
Sbjct: 117 RNEVGIKIKVLNDRLK--EISARRSKLQLHVSAAEPRVVPRVSRITSPVMESDMVGERLE 174

Query: 807 KELKSVMDALQKKIQS-GIIMLVGISKE--KKASVLIVVTEDLLDRFNAV---------- 853
           ++ K++++ L K+  S  +++L  +      K +    V  D   +  A           
Sbjct: 175 EDAKALVEQLTKQDPSKNVVVLAIVGIGGIGKTTFAQKVFND--GKIKANFRTTIWVCVS 232

Query: 854 ------DLARLSAKVLGGGGGG 869
                 DL R   K  GG  GG
Sbjct: 233 QEFSETDLLRNIVKGAGGSHGG 254


>gi|326790613|ref|YP_004308434.1| threonyl/alanyl tRNA synthetase SAD [Clostridium lentocellum DSM
           5427]
 gi|326541377|gb|ADZ83236.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium lentocellum DSM
           5427]
          Length = 254

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 81/244 (33%), Gaps = 44/244 (18%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--------------------IGDGIRL 541
           +   V   ++ +V DQT  + E GGQ  D GC                     +GD    
Sbjct: 18  IATVVEVSEMGIVCDQTVAFPEGGGQQADKGCFLIEDNFKQRLKILFFNVKKGVGDVFLE 77

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH-LLHHALSTI 600
           Q          I+ +  +      +  M + + ID + R +L+I+H+A H +L       
Sbjct: 78  QDFPTISVNTPIYHYIEVEYLRYFKVGMKVKICIDVERRARLTISHTAIHLVLMAIDRVR 137

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
            G      G+ I  D  R D      +   E+  I + VN++I  +  + T         
Sbjct: 138 KGIITYVKGADIREDLARLDFFIHDKLNDDEIMKITECVNELILNDYKIET--------- 188

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                                            CGGTH+ ST  I  + I  +S     +
Sbjct: 189 -------YAHVKQKEAVYWKCLDY------VCACGGTHLPSTKYIGNVRITKKS-KGKNL 234

Query: 721 RRIE 724
           +RI 
Sbjct: 235 QRIT 238


>gi|283769155|ref|ZP_06342059.1| conserved hypothetical protein [Bulleidia extructa W1219]
 gi|283104131|gb|EFC05510.1| conserved hypothetical protein [Bulleidia extructa W1219]
          Length = 497

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
             ++   K     +  +++++ +E +    I  K+K +  ++DL        + +     
Sbjct: 142 DDISKMEK-KAKELQEKLDKLNDEIKDKNKISDKQKEK--IKDLEAEIEGLKDKLKKDKE 198

Query: 803 EVD-SKELKSVMDALQKKIQS 822
             D S ++K  MD L +KI+ 
Sbjct: 199 NKDLSADMKKEMDKLTEKIRE 219


>gi|296087472|emb|CBI34061.3| unnamed protein product [Vitis vinifera]
          Length = 91

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 274 VIVDHLRSSSFLIADGIL--PANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALC 330
           +  D+    +F I D +     NEGR YVLRRI+ R + Y    L   E     L+  + 
Sbjct: 14  IYADYFLIINF-IHDYLTYSVGNEGREYVLRRILHRDVRYGSEVLKAQEGFFNSLINIVV 72

Query: 331 TEMGSAYPELIQAKLLI 347
             MG  +PEL Q ++ I
Sbjct: 73  KVMGDVFPELKQHEVHI 89


>gi|242373949|ref|ZP_04819523.1| cell shape protein MreC [Staphylococcus epidermidis M23864:W1]
 gi|242348303|gb|EES39905.1| cell shape protein MreC [Staphylococcus epidermidis M23864:W1]
          Length = 283

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 19/124 (15%)

Query: 728 GQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           GQRA S+ +      + ++ +     Q     +++++  E +KL+  + K K +L+V+DL
Sbjct: 50  GQRAVSYPIHFVTGAIGNIFNKDGSKQDK--NKIKQLEAENQKLETENKKYKKELDVKDL 107

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           S ++      ++               D         I++  G     K ++ ++ +E L
Sbjct: 108 SKYEPISTTVIARNP------------DQWMN----TIVIDKGSKSGIKNNMAVMTSEGL 151

Query: 847 LDRF 850
           + R 
Sbjct: 152 VGRV 155


>gi|296109490|ref|YP_003616439.1| methyl-accepting chemotaxis sensory transducer [Methanocaldococcus
           infernus ME]
 gi|295434304|gb|ADG13475.1| methyl-accepting chemotaxis sensory transducer [Methanocaldococcus
           infernus ME]
          Length = 754

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 72/204 (35%), Gaps = 30/204 (14%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           ++   E      +  + ++ GI+R       R +  +    + +  L   LK     +  
Sbjct: 406 MTRVAEGDFSVRMDTTEVKEGIKR-----DVRIQKLINKALDMISELIKKLKEDVDRLHE 460

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDSKELKSVMDALQ 817
           +++ + EE  +++ +  +     N   ++   +   +  ++  + +V+      + +   
Sbjct: 461 KLKTLEEEADRVKEVSDQVADAANQVAVAATDQSNKLQDITQELEDVN-----KLANDAY 515

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRP--HM 874
                G+  +  + +  +  V         ++  NA++  +  A V+      GR    +
Sbjct: 516 NSALEGVEAVKSVEEASQVGV---------EKVENAIETMQRIANVIDE---LGRALEEL 563

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
               G    K ++  A +    ++
Sbjct: 564 ----GKKSQKINEITALIKDIAEQ 583


>gi|124027865|ref|YP_001013185.1| hypothetical protein Hbut_0993 [Hyperthermus butylicus DSM 5456]
 gi|123978559|gb|ABM80840.1| universally conserved protein [Hyperthermus butylicus DSM 5456]
          Length = 448

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---------------KL 779
           L    ++L  L+  L V   ++  ++E++  E  K++  +A +               + 
Sbjct: 304 LSSLAQQLGELSKGLSVLAQDLNAKIEKLNSEITKIKEAYATKDELNTAINNVNSRIDQE 363

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           + ++E        ++N +   + +++S  ++ + + +Q+
Sbjct: 364 KASLEQQISALNEEINKLKQRLDQLESATIQQLSNNIQQ 402


>gi|5880614|gb|AAD54769.1|AF120932_1 SMC-like protein [Arabidopsis thaliana]
 gi|5880616|gb|AAD54770.1|AF120933_1 SMC-like protein [Arabidopsis thaliana]
          Length = 1055

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 6/101 (5%)

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
                  I+  +RR+E   G      +     +   +   LK  +  V  +VE +    +
Sbjct: 340 KCNYVQKIKDRVRRLERQVGDINEQTMKNTQAEQSEIEEKLKYLEREV-EKVETLRSRLK 398

Query: 769 K-----LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           +     L+     RK   ++ED+  +      F++  I+++
Sbjct: 399 EEENCFLEKAFEGRKKMEHIEDMIKNHQKRQRFITSNINDL 439


>gi|208022632|ref|NP_001129069.1| girdin isoform 1 [Homo sapiens]
 gi|74356043|dbj|BAE44387.1| girdin [Homo sapiens]
          Length = 1870

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K  L+  
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSF 682

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 683 KNLTFQLESLEKENSQLDEENL-ELRRNVESLK 714


>gi|323485659|ref|ZP_08090997.1| M23/M37 family Peptidase [Clostridium symbiosum WAL-14163]
 gi|323401009|gb|EGA93369.1| M23/M37 family Peptidase [Clostridium symbiosum WAL-14163]
          Length = 401

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           +  +  +LK + S +      V            ++++I  E ++ +   A++K +   +
Sbjct: 204 VNEKSAELKKVNSQIGTKTAQVEAYEKDIKAQEDKIKQIEAEIKRQE-EEARKKAEAAGQ 262

Query: 785 DLSCHKIADVNFM 797
             +   I ++ F+
Sbjct: 263 KYNTVSIGNIKFI 275


>gi|312214112|emb|CBX94114.1| similar to cytoplasmic dynein 1 heavy chain 1 [Leptosphaeria
            maculans]
          Length = 4372

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/192 (9%), Positives = 55/192 (28%), Gaps = 13/192 (6%)

Query: 606  SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN---LPVVTRIMNREDAIAS 662
                  +    + F +   +   S++  +     N  +                 +   S
Sbjct: 3066 WFTEQIVKNLHVVFTMNPPEEGLSSKAATSPALFNRCVLNWFGDWSDQALYQVGSELTHS 3125

Query: 663  GAAAL----LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                              R +S+         +A+    H   +    L    +      
Sbjct: 3126 VDLDRTNYVAPDTIPIAYRGLSLPPSHRESVVNAMVAVHHSLRSKNAKLQKTQNRKMYLT 3185

Query: 719  GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                ++ +   +       + E L+     L V     + ++ E +++ ++L+   A+++
Sbjct: 3186 PRHFLDFVA--QYVKLYNEKREDLEEQQRHLNVG----LEKLRETFDKVKELRASLAEKQ 3239

Query: 779  LQLNVEDLSCHK 790
             QL  +D   ++
Sbjct: 3240 TQLTKKDAEANE 3251


>gi|293376470|ref|ZP_06622699.1| threonine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325842051|ref|ZP_08167588.1| threonine--tRNA ligase [Turicibacter sp. HGF1]
 gi|292644892|gb|EFF62973.1| threonine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325489773|gb|EGC92129.1| threonine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 645

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 13/200 (6%)

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
              H       +  +  + L  + +      INHSA HL+  A+  +        G  I 
Sbjct: 40  INGHLYDLTRPIEADAKIELITNDRPEAWEIINHSAAHLMAAAIKRLYPDAKFGVGPAIE 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
                +D+     I+ A+L +IE  +  I ++ LP++ + ++RE+A    AA     +  
Sbjct: 100 DG-FYYDIDTESKISEADLPAIEKMMQKISSEALPIIRQELSREEAKELFAADEYKLELI 158

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI-------VSESSIRAGIRRIEAI 726
           D ++   +         + LC G HV +T ++    +           S    + RI   
Sbjct: 159 DAIKEGEIITTYSEGDFTDLCSGVHVPNTKDVKFFKLLSVAGAYWRGDSDNKMLTRIY-- 216

Query: 727 TGQRAR--SHLMGQDEKLKS 744
            G  A     L      L+ 
Sbjct: 217 -GAAALSKDALADHLRILEE 235


>gi|188589060|ref|YP_001922700.1| DHH family protein [Clostridium botulinum E3 str. Alaska E43]
 gi|251781145|ref|ZP_04824065.1| DHH family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188499341|gb|ACD52477.1| DHH family protein [Clostridium botulinum E3 str. Alaska E43]
 gi|243085460|gb|EES51350.1| DHH family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 646

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 28/158 (17%)

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
             ASFL+ S  + +  +++I+ +   L+         L  E +   ++ D   ++     
Sbjct: 508 EAASFLRKSGADTIE-IKKIFSD--DLENYL------LIAETIKSAEVNDNIAIAICPKN 558

Query: 804 VDSKELKSVMDALQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAK 861
           VD+  +    D L       +  +L  I+ +      I ++       +A D+  ++  +
Sbjct: 559 VDTVIVAKAADELLNISGINVSFVLAQINND------IYIS-----GRSAGDINVQIVLE 607

Query: 862 VLGGGGGGGRPHMAQSGGPNGN-KADQAIAGVASFLKK 898
            LGGGG     HM  +G    + K +  +  +   +KK
Sbjct: 608 TLGGGG-----HMNIAGAKVSDAKIEDVVYDLKEAIKK 640


>gi|119620506|gb|EAX00101.1| KIAA1212, isoform CRA_b [Homo sapiens]
          Length = 1842

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K  L+  
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSF 682

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 683 KNLTFQLESLEKENSQLDEENL-ELRRNVESLK 714


>gi|14549433|gb|AAK66864.1| calcium binding protein NEFA [Rattus norvegicus]
          Length = 420

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 30/72 (41%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +E+LK     + + +  +  + +E+ ++  +LQ  H   + Q      +  ++    F  
Sbjct: 344 EEELKEYEGIIAIQESELKKKADELQKQKEELQRQHDHLEAQKQEYQQAVQQLEQKKFQQ 403

Query: 799 HIISEVDSKELK 810
            I     + ELK
Sbjct: 404 GIAPSGPAGELK 415


>gi|74008133|ref|XP_538144.2| PREDICTED: similar to angiomotin isoform 1 [Canis familiaris]
 gi|74008135|ref|XP_863732.1| PREDICTED: similar to angiomotin isoform 2 [Canis familiaris]
          Length = 1085

 Score = 38.2 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 52/133 (39%), Gaps = 21/133 (15%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARS-----HLMGQDEKLKSLASFLKVSQGNVVG 758
           EI  +    E+ +++  +R EA+  ++A        +    +  + L   L+ +   +  
Sbjct: 456 EIQRVSEAYENLVKSSSKR-EAL--EKAMRNKLEGEIRRMHDFNRDLRERLETANKQLAE 512

Query: 759 R-----------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-KIADVNFMSHIISEVDS 806
           +           + +++ + ++ Q    K + +L     +   +   +      +S   +
Sbjct: 513 KEYEGSEDTRKTISQLFAKNKESQKEKEKLEAELATARSTNEDQRRHIEIRDQALSNAQA 572

Query: 807 KELKSVMDALQKK 819
           K +K + + L+KK
Sbjct: 573 KVVK-LEEELKKK 584


>gi|281411756|ref|YP_003345835.1| hypothetical protein Tnap_0317 [Thermotoga naphthophila RKU-10]
 gi|281372859|gb|ADA66421.1| conserved hypothetical protein [Thermotoga naphthophila RKU-10]
          Length = 758

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +  + +   Q+E LK+    + V   + +  + ++ E    L+      + ++       
Sbjct: 502 EELQEYSREQEEVLKNTLKEIGVDSEDELKVLRDLLERRANLRKTRDSLEKEIANFMKEK 561

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            +I          S    +ELK  ++ ++ +++  ++
Sbjct: 562 EEIESSR------SNARIEELKREVEQIESELEKLVV 592


>gi|224047486|ref|XP_002199585.1| PREDICTED: coiled-coil domain containing 88A [Taeniopygia guttata]
          Length = 1884

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E   L+  + K K  L+  
Sbjct: 623 GERAEELENELHRTEKE-NELLQKKITNLKITCEKIEALEQENSDLETENRKLKKTLDSL 681

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 682 KNLTFQLESLEKENSQLDEENL-ELRRTIESLK 713


>gi|224112749|ref|XP_002316281.1| predicted protein [Populus trichocarpa]
 gi|222865321|gb|EEF02452.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 20/99 (20%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY---RKLQLIHAKRKLQLNVEDL 786
            A       ++ LK LA   K  +  +  R+  + ++    + L+L   + +  L     
Sbjct: 487 AALEQQKADEDVLK-LAEDQKRQKEELHNRIIRLEKQLDAKQALELEIERLRGAL----- 540

Query: 787 SCHKIADVNFMSHIISEVDSKELKSV---MDALQKKIQS 822
                   N M H+  + D + L+ +   +  L++K   
Sbjct: 541 --------NVMKHMEDDGDVEVLRKMDAIIKNLREKEGE 571


>gi|188587922|ref|YP_001920421.1| putative lipoprotein [Clostridium botulinum E3 str. Alaska E43]
 gi|251777939|ref|ZP_04820859.1| putative lipoprotein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188498203|gb|ACD51339.1| putative lipoprotein [Clostridium botulinum E3 str. Alaska E43]
 gi|243082254|gb|EES48144.1| putative lipoprotein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 173

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           + ++ L   L+ +   +  +++E+ E+  ++    A +  +L  +            +  
Sbjct: 53  DDIQELKDKLRDTPSEIADKMDELDEDKERIMKEFADKADELTDKLNQADLEGKSEDLKD 112

Query: 800 IISEVDSK--ELKSVMDALQKKIQS 822
              E+  K  ELK  +D  + KI+ 
Sbjct: 113 KFDEITDKLDELKDNVDEAKDKIED 137


>gi|168215512|ref|ZP_02641137.1| hypothetical protein AC7_2139 [Clostridium perfringens NCTC 8239]
 gi|182382307|gb|EDT79786.1| hypothetical protein AC7_2139 [Clostridium perfringens NCTC 8239]
          Length = 451

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 51/108 (47%), Gaps = 10/108 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            ++L  + E+LK+  + LK +       VE++ +E ++++  +A+    + +       +
Sbjct: 170 IANLKKEIERLKNENNSLKSANDKNSYEVEKLSKELKEVKSNNAELNKTIEISRNKEKNL 229

Query: 792 -ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             ++N +    + V+ KEL+     L++K  S    L  I  E K ++
Sbjct: 230 SNEINNLKSKNNNVE-KELR----DLKEKNNS----LSSIVTEAKKNL 268


>gi|145540471|ref|XP_001455925.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423734|emb|CAK88528.1| unnamed protein product [Paramecium tetraurelia]
          Length = 705

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
              Q+E + +          + + +++   +E +K      K K+          ++ + 
Sbjct: 370 YSEQEELVNNQKQI----IEDYIEQIQNHQQEKKKFNREIEKLKIINEGLQDQIDQVNNQ 425

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           N  +    E  +KEL+    AL K+++  +I L    K
Sbjct: 426 NLTAI---ETSNKELR-YQKALVKQLEQEVIQLTSTVK 459


>gi|148269526|ref|YP_001243986.1| hypothetical protein Tpet_0384 [Thermotoga petrophila RKU-1]
 gi|147735070|gb|ABQ46410.1| hypothetical protein Tpet_0384 [Thermotoga petrophila RKU-1]
          Length = 758

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +  + +   Q+E LK+    + V   + +  + ++ E    L+      + ++       
Sbjct: 502 EELQEYSREQEEVLKNTLKEIGVDSEDELKVLRDLLERRANLRKTRDSLEKEIANFMKEK 561

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            +I          S    +ELK  ++ ++ +++  ++
Sbjct: 562 EEIESSR------SNARIEELKREVEQIESELEKLVV 592


>gi|116310694|emb|CAH67493.1| H0306B06.8 [Oryza sativa Indica Group]
 gi|116310712|emb|CAH67509.1| OSIGBa0092E01.4 [Oryza sativa Indica Group]
          Length = 753

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 50/134 (37%), Gaps = 24/134 (17%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +RA      + +    +A+  KVS   ++ RV+ + +   KL+           ++D+  
Sbjct: 630 RRAYKAAREESDHAAEIAAGEKVSSA-LIERVDAMLQ---KLEKE---------IDDVDA 676

Query: 789 HKIADVNFMSHIISE-VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                   +       V   E+ +  + L+  I           KE    ++  +++D  
Sbjct: 677 RIGNRWQLLDSDRDGKVTPDEVAAAANYLKDTIG----------KEGVQELISNLSKDKD 726

Query: 848 DRFNAVDLARLSAK 861
            +    D+ +L+++
Sbjct: 727 GKILVEDIVKLASQ 740


>gi|12655862|gb|AAK00629.1| ninein isotype 2 [Homo sapiens]
          Length = 2069

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 58/136 (42%), Gaps = 12/136 (8%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+ L     +   R    R+  +  Q+       ++E+LK++   L+++   + 
Sbjct: 1430 HQATIAELELEKTKLQELTRKLKERVTILVKQKDVLSHGEKEEELKAMMHDLQITCSEMQ 1489

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF---------MSHIISEV--DS 806
             +VE +  E  KLQ  ++  + ++   +     I+++           M      V  ++
Sbjct: 1490 QKVELLRYESEKLQQENSILRNEITTLNEE-DSISNLKLGTLYWNSGRMRQKTETVKQEN 1548

Query: 807  KELKSVMDALQKKIQS 822
              ++ +++ L+K+I  
Sbjct: 1549 AAVQKMVENLKKQISE 1564


>gi|115459204|ref|NP_001053202.1| Os04g0496800 [Oryza sativa Japonica Group]
 gi|38345383|emb|CAD41252.2| OSJNBa0067K08.12 [Oryza sativa Japonica Group]
 gi|113564773|dbj|BAF15116.1| Os04g0496800 [Oryza sativa Japonica Group]
 gi|125590879|gb|EAZ31229.1| hypothetical protein OsJ_15330 [Oryza sativa Japonica Group]
 gi|215697094|dbj|BAG91088.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 753

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 50/134 (37%), Gaps = 24/134 (17%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +RA      + +    +A+  KVS   ++ RV+ + +   KL+           ++D+  
Sbjct: 630 RRAYKAAREESDHAAEIAAGEKVSSA-LIERVDAMLQ---KLEKE---------IDDVDA 676

Query: 789 HKIADVNFMSHIISE-VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                   +       V   E+ +  + L+  I           KE    ++  +++D  
Sbjct: 677 RIGNRWQLLDSDRDGKVTPDEVAAAANYLKDTIG----------KEGVQELISNLSKDKD 726

Query: 848 DRFNAVDLARLSAK 861
            +    D+ +L+++
Sbjct: 727 GKILVEDIVKLASQ 740


>gi|289548351|ref|YP_003473339.1| outer membrane chaperone Skp (OmpH) [Thermocrinis albus DSM 14484]
 gi|289181968|gb|ADC89212.1| outer membrane chaperone Skp (OmpH) [Thermocrinis albus DSM 14484]
          Length = 161

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 23/139 (16%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS----CHKIA 792
             +  L+  +  +K ++  +  +V++   +  +++    + K Q+    +S      KI 
Sbjct: 25  DANRILQE-SKTVKQAEQELRAKVQDYQRQLDEIEKKLEELKKQIESRAISQQAREQKIK 83

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGI---IMLVGISKEKKASVLIV-------- 841
           +         E+  K  K +   L++K++  I   + L+     KK     V        
Sbjct: 84  EYQQTQAKGIEIQQKAQKEI-TELKEKLEGDILSKVRLIAEDMAKKNGYAGVFDCGAFVY 142

Query: 842 ------VTEDLLDRFNAVD 854
                 VTE+++ + +   
Sbjct: 143 RSPDMDVTEEVIRKLDVGK 161


>gi|258405978|ref|YP_003198720.1| ATP-dependent chaperone ClpB [Desulfohalobium retbaense DSM 5692]
 gi|257798205|gb|ACV69142.1| ATP-dependent chaperone ClpB [Desulfohalobium retbaense DSM 5692]
          Length = 866

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH---AKRKLQLNVED 785
            +A   +      +++    L      +  R+ ++  E   L+      +K +L+   ++
Sbjct: 393 DKAIDLVDEAAAMIRTEIDSLPTDLDEINRRIMQLEIEREALKREKDEASKERLERLEKE 452

Query: 786 LSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSG 823
           L+  K      ++    E +   EL+S    L+++++  
Sbjct: 453 LADQKEKQTTLLAQWEKEKEGINELRS----LKEELEKT 487


>gi|222056670|ref|YP_002539032.1| RNA binding metal dependent phosphohydrolase [Geobacter sp. FRC-32]
 gi|221565959|gb|ACM21931.1| RNA binding metal dependent phosphohydrolase [Geobacter sp. FRC-32]
          Length = 521

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 48/119 (40%), Gaps = 20/119 (16%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R+E I+G  A        E +++ A        +   R++ I EE ++     +K  + L
Sbjct: 144 RLENISGMTAVEAKKILMETMENEAKL------DAAKRIKAIEEEAKETADKKSKEIMAL 197

Query: 782 NVEDLSCHKIAD--VNFMSH-------IISEVDSKELKSV-----MDALQKKIQSGIIM 826
            ++  +   +A+  V+ ++         I   + + ++++     +D +       +I+
Sbjct: 198 AIQRYAGEYVAERTVSVVALPSDEMKGRIIGREGRNIRALEAATGIDLIIDDTPEAVIL 256


>gi|110639826|ref|YP_680036.1| hypothetical protein CHU_3459 [Cytophaga hutchinsonii ATCC 33406]
 gi|110282507|gb|ABG60693.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 305

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 25/146 (17%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA----KRKLQLN--VED 785
              L  Q   L++ A+ L  S  ++  ++ E+      L+  +A    K   Q+    +D
Sbjct: 60  LEGLQLQYHSLQAQAAQLGQSNDSLAAKIAELDNAIASLKKGNAVNMNKLNAQIASYKKD 119

Query: 786 LSCHKIA-------------DVNFMSH--IISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           L   +                ++ +    ++       L+SV   LQ+K +   I+    
Sbjct: 120 LEAKEAEIMQLREENKNLNSSIDTLKQDKVVMNDSINNLRSVRSDLQQKYELASIL---K 176

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDL 855
           ++  KA+V+    ++L+ D + A ++
Sbjct: 177 AENLKATVINAKGKELVDDEYKAKNI 202


>gi|327401484|ref|YP_004342323.1| hypothetical protein Arcve_1608 [Archaeoglobus veneficus SNP6]
 gi|327316992|gb|AEA47608.1| hypothetical protein Arcve_1608 [Archaeoglobus veneficus SNP6]
          Length = 463

 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 55/127 (43%), Gaps = 13/127 (10%)

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
                ++L   + E +  A + +IE              +EKL+++      +   +   
Sbjct: 159 DRIENMILTSNMDEETKEAMLAKIE--------EERAAFEEKLQAINE--SETPEELREA 208

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNF-MSHIISEVDSKELKSVMDAL 816
           V+E+ EE++ ++++     +Q+ +  +     K  D+   +   I+E+D  +L ++++  
Sbjct: 209 VKELKEEWKNVRVLVKAVAMQVAIVRIETTIEKAEDLQLKLEGQITELDDAKLAAMLEDY 268

Query: 817 QKKIQSG 823
             K++  
Sbjct: 269 AAKLEEA 275


>gi|187934227|ref|YP_001885291.1| putative lipoprotein [Clostridium botulinum B str. Eklund 17B]
 gi|187722380|gb|ACD23601.1| putative lipoprotein [Clostridium botulinum B str. Eklund 17B]
          Length = 173

 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           + ++ L   L+ +   +  +++E+ E+  ++    A +  +L  +            +  
Sbjct: 53  DDIQELKDKLRDTPSEIADKMDELDEDKERIMKEFADKADELTDKLNQADLEGKSEDLKD 112

Query: 800 IISEVDSK--ELKSVMDALQKKIQS 822
              E+  K  ELK  +D  + KI+ 
Sbjct: 113 KFDEITDKLDELKDNVDEAKDKIED 137


>gi|182626421|ref|ZP_02954174.1| DHH family protein [Clostridium perfringens D str. JGS1721]
 gi|177908295|gb|EDT70848.1| DHH family protein [Clostridium perfringens D str. JGS1721]
          Length = 652

 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 68/185 (36%), Gaps = 32/185 (17%)

Query: 722 RIEAITGQRARSHLMGQDEKLK------SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           RIEA  G  A  ++  ++   K        ASFL+    + V  +++I+     L+   A
Sbjct: 486 RIEAE-GLLAGIYIDTKNFSFKTGVRTFEAASFLRRLGADTVE-IKKIFSNN--LENYIA 541

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGISKEK 834
           K ++   ++         +      I++          D L          +L+ + ++ 
Sbjct: 542 KAEI---IKSAKVENKIAIAVCPENITDTVVAA--QAADELLNITGIQASFVLIKLGED- 595

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK-ADQAIAGVA 893
                + ++   L   N     ++  + LGGGG     HM  +G    +   D+AI  + 
Sbjct: 596 -----VAISARSLGDIN----VQVILEELGGGG-----HMTMAGAKIKDATIDEAIEKIK 641

Query: 894 SFLKK 898
             + K
Sbjct: 642 EAIAK 646


>gi|170288201|ref|YP_001738439.1| hypothetical protein TRQ2_0400 [Thermotoga sp. RQ2]
 gi|170175704|gb|ACB08756.1| conserved hypothetical protein [Thermotoga sp. RQ2]
          Length = 758

 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +  + +   Q+E LK+    + V   + +  + ++ E    L+      + ++       
Sbjct: 502 EELQEYSREQEEVLKNTLKEIGVDSEDELKVLRDLLERRANLRKTRDSLEKEIANFMKEK 561

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            +I          S    +ELK  ++ ++ +++  ++
Sbjct: 562 EEIESSR------SNARIEELKREVEQIESELEKLVV 592


>gi|168214823|ref|ZP_02640448.1| DHH family protein [Clostridium perfringens CPE str. F4969]
 gi|170713715|gb|EDT25897.1| DHH family protein [Clostridium perfringens CPE str. F4969]
          Length = 652

 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 68/185 (36%), Gaps = 32/185 (17%)

Query: 722 RIEAITGQRARSHLMGQDEKLK------SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           RIEA  G  A  ++  ++   K        ASFL+    + V  +++I+     L+   A
Sbjct: 486 RIEAE-GLLAGIYIDTKNFSFKTGVRTFEAASFLRRLGADTVE-IKKIFSNN--LENYIA 541

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGISKEK 834
           K ++   ++         +      I++          D L          +L+ + ++ 
Sbjct: 542 KAEI---IKSAKVENKIAIAVCPENITDTVVAA--QAADELLNITGIQASFVLIKLGED- 595

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK-ADQAIAGVA 893
                + ++   L   N     ++  + LGGGG     HM  +G    +   D+AI  + 
Sbjct: 596 -----VAISARSLGDIN----VQVILEELGGGG-----HMTMAGAKIKDATIDEAIEKIK 641

Query: 894 SFLKK 898
             + K
Sbjct: 642 EAIAK 646


>gi|15921478|ref|NP_377147.1| cell division control protein [Sulfolobus tokodaii str. 7]
 gi|15622264|dbj|BAB66256.1| 369aa long hypothetical cell division control protein [Sulfolobus
           tokodaii str. 7]
          Length = 369

 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 25/154 (16%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRV-EEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           + A ++     E L  L +       +   +V E++  EY+         K  +      
Sbjct: 28  EDAINNYKKAIEILSQLIALY---PDSPSIKVYEQMINEYK---KRIEVLKEAVPASGSE 81

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII-----------------MLVGI 830
             +I   + +     +V  K++  + D +++ ++  II                 +L G 
Sbjct: 82  SKQIDIEDLIVKEKPKVSFKDIVGL-DDVKEALKEAIIYPTKRPDLFPLGWPRGILLYGP 140

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
               K  +   V  ++   F  VD A + +K LG
Sbjct: 141 PGCGKTMIAAAVASEIDSYFIQVDAASIMSKWLG 174


>gi|32566156|ref|NP_501620.2| hypothetical protein Y11D7A.14 [Caenorhabditis elegans]
 gi|26985908|emb|CAA21588.2| C. elegans protein Y11D7A.14, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1464

 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 77/243 (31%), Gaps = 11/243 (4%)

Query: 583  LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  N    ++L    +      +  N      +     +   K     E + + +  N  
Sbjct: 904  MEQNEEIFNVLERKYNEQHKKVMKMNDVLREYERKIEQLNMEKTDLENENQKLRETQNRQ 963

Query: 643  IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             +    +   +M +   I      +      +  + +++   +  +           ++ 
Sbjct: 964  DSHYSNLEKEVMEKSSLIDELQNQIQKLSDENNEQRLTIAKLETALEDEKARFARQNNTI 1023

Query: 703  GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            G++  L       I        A+  + +   +  + EKL    +  K        +++E
Sbjct: 1024 GDMQKLISELNEKIAR--FDNIALNERNSTRKIEREKEKLNEELTTAKEIIQKQAKKIDE 1081

Query: 763  IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV---MDALQKK 819
            + EE RK +   ++ + +L  ++               + +   + LK +   ++ +++K
Sbjct: 1082 LKEECRKRKNEASRLERKLEDKEAMMAD------CVKELKDSHKERLKEMEQKVEDVKRK 1135

Query: 820  IQS 822
               
Sbjct: 1136 NSK 1138


>gi|324499830|gb|ADY39937.1| Major antigen [Ascaris suum]
          Length = 2200

 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHII 801
           +      +  +     R+ E+      LQ  + K K + N+       +  D N     +
Sbjct: 697 EEAVELNQTLEEEFKNRINELTRRLEALQRENNKLKAESNMLKDKYRDVENDYNTTQRKL 756

Query: 802 SEVDSKELKSVMDALQKKI 820
            E DS  +K + D +++++
Sbjct: 757 EERDS-AIKHL-DDVKRQL 773


>gi|255584877|ref|XP_002533154.1| conserved hypothetical protein [Ricinus communis]
 gi|223527049|gb|EEF29235.1| conserved hypothetical protein [Ricinus communis]
          Length = 640

 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 29/198 (14%)

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            +A   G      T     V       +D    +     G H+  TG++  +  + E   
Sbjct: 199 YEADHHGKKDYFTTGEKSGVYCWVARADDYKADNI---IGDHLRKTGDLKTISEIMEEEA 255

Query: 717 RAGIRRIEAITGQRARS--HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK----- 769
           R   + I  +         H+    +K    +  L          ++   EE RK     
Sbjct: 256 RKQDKLISNLNNIIEIKNKHIQEMQDKFSETSVSLNKLMEEKDRLLQAYNEEIRKIQMSA 315

Query: 770 ---------------LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
                          LQ+   KR+L++   +L   +  + N    +  E++   +++   
Sbjct: 316 REHFQKIFNDHEKLKLQVDSQKRELEMRGSELEKREAKNENDRRKLSEEIEKNAIRNSSL 375

Query: 815 AL----QKKIQSGIIMLV 828
            L    Q+K    ++ L 
Sbjct: 376 QLAAFEQQKADENVLKLA 393


>gi|168214917|ref|ZP_02640542.1| hypothetical protein AC5_2228 [Clostridium perfringens CPE str.
           F4969]
 gi|170713656|gb|EDT25838.1| hypothetical protein AC5_2228 [Clostridium perfringens CPE str.
           F4969]
          Length = 451

 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            ++L  + EKLKS  + LK ++   +  VE++ +E ++++  +A+    + +       +
Sbjct: 170 IANLKKEIEKLKSENNSLKSAKDKNLHEVEKLSKELKEVKSNNAELNKTIEISRNKEKNL 229

Query: 792 -ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             ++N +    + V+ KEL+     L++K  S    L  I  E K ++
Sbjct: 230 SNEINNLKSKNNHVE-KELR----DLKEKNNS----LSSIVTEAKKNL 268


>gi|125539277|gb|EAY85672.1| hypothetical protein OsI_07041 [Oryza sativa Indica Group]
          Length = 722

 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 730 RARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           RA      Q E L +  + LK S    +  +V+E  E+ RKL+   +  +++L    ++ 
Sbjct: 219 RAGEANAAQVELLNAEINRLKNSFNSELESKVKESAEKTRKLEAETSVLRIKLKKAKVAE 278

Query: 789 HKIADVNFMSHIISEVDSKELKS------VMDALQKK 819
            K+A++      +    +  +K+      ++   +KK
Sbjct: 279 EKVAELEGAVEGLRADVANAIKARREADGLVGEWKKK 315


>gi|18311619|ref|NP_563553.1| DHH family protein [Clostridium perfringens str. 13]
 gi|168211577|ref|ZP_02637202.1| DHH family protein [Clostridium perfringens B str. ATCC 3626]
 gi|168218031|ref|ZP_02643656.1| DHH family protein [Clostridium perfringens NCTC 8239]
 gi|18146303|dbj|BAB82343.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170710447|gb|EDT22629.1| DHH family protein [Clostridium perfringens B str. ATCC 3626]
 gi|182379956|gb|EDT77435.1| DHH family protein [Clostridium perfringens NCTC 8239]
          Length = 652

 Score = 38.2 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 68/185 (36%), Gaps = 32/185 (17%)

Query: 722 RIEAITGQRARSHLMGQDEKLK------SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           RIEA  G  A  ++  ++   K        ASFL+    + V  +++I+     L+   A
Sbjct: 486 RIEAE-GLLAGIYIDTKNFSFKTGVRTFEAASFLRRLGADTVE-IKKIFSNN--LENYIA 541

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGISKEK 834
           K ++   ++         +      I++          D L          +L+ + ++ 
Sbjct: 542 KAEI---IKSAKVENKIAIAVCPENITDTVVAA--QAADELLNITGIQASFVLIKLGED- 595

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK-ADQAIAGVA 893
                + ++   L   N     ++  + LGGGG     HM  +G    +   D+AI  + 
Sbjct: 596 -----VAISARSLGDIN----VQVILEELGGGG-----HMTMAGAKIKDATIDEAIEKIK 641

Query: 894 SFLKK 898
             + K
Sbjct: 642 EAIAK 646


>gi|307166041|gb|EFN60318.1| Centromeric protein E [Camponotus floridanus]
          Length = 2526

 Score = 38.2 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-- 789
            L  ++ +++ +   LK    ++     ++E I  E   L+    +RK  +    +     
Sbjct: 2048 LEKKNLRIEEITELLKTKCDDLTEYKVKLEMIESENAFLKQQTGERKANMEQYRIEIETL 2107

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            KI +   M  I  +++ +ELKS+   L+++I
Sbjct: 2108 KIENKKDMDAIKDKLNFEELKSI--ELKRQI 2136


>gi|125548882|gb|EAY94704.1| hypothetical protein OsI_16482 [Oryza sativa Indica Group]
          Length = 756

 Score = 38.2 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 50/134 (37%), Gaps = 24/134 (17%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +RA      + +    +A+  KVS   ++ RV+ + +   KL+           ++D+  
Sbjct: 633 RRAYKAAREESDHAAEIAAGEKVSSA-LIERVDAMLQ---KLEKE---------IDDVDA 679

Query: 789 HKIADVNFMSHIISE-VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                   +       V   E+ +  + L+  I           KE    ++  +++D  
Sbjct: 680 RIGNRWQLLDSDRDGKVTPDEVAAAANYLKDTIG----------KEGVQELISNLSKDKD 729

Query: 848 DRFNAVDLARLSAK 861
            +    D+ +L+++
Sbjct: 730 GKILVEDIVKLASQ 743


>gi|293568650|ref|ZP_06679965.1| hypothetical protein EfmE1071_1426 [Enterococcus faecium E1071]
 gi|291588610|gb|EFF20443.1| hypothetical protein EfmE1071_1426 [Enterococcus faecium E1071]
          Length = 259

 Score = 38.2 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 20/108 (18%)

Query: 739 DEKLKSLASFLKV----------SQGNVVGRVEEIWEEYR----KLQLIHAKRKLQLNVE 784
           +E + +L+  L             +  +      I EE +    +L+   +K K+Q  V 
Sbjct: 77  EETVSNLSHKLSSIKLSADDYDIKESELPKEAAAIQEEKKAVLTQLEDAESKLKIQTAVN 136

Query: 785 DLSCHKIADVN------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           DL    +++         +   ++  D   ++  M   +      ++M
Sbjct: 137 DLFTKNVSNWQQAVDDVIIKEKVTSADVARVRENMSFFKDSPWKTVVM 184


>gi|256081379|ref|XP_002576948.1| Cyclin-B1-interacting protein 1 [Schistosoma mansoni]
 gi|238662238|emb|CAZ33185.1| Cyclin-B1-interacting protein 1, putative [Schistosoma mansoni]
          Length = 277

 Score = 38.2 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 721 RRIEAIT-----GQRARSHLM-GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           R IE  T     G +   ++    +E+ K++    K    N+  ++ ++  E   ++   
Sbjct: 87  RAIEFFTLQTAQGVKYLEYINYKLEERYKNMEIQCKSLLSNLEQKINKLQNEKDAIEKEC 146

Query: 775 AKRKLQLNVEDLSCHKIAD 793
            + + +L        ++  
Sbjct: 147 EELRDKLVASTHKLSQLEG 165


>gi|51869989|ref|YP_073542.1| membrane-bound metallopeptidase [Lymphocystis disease virus -
           isolate China]
 gi|51858197|gb|AAU10881.1| membrane-bound metallopeptidase [Lymphocystis disease virus -
           isolate China]
          Length = 454

 Score = 38.2 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 11/96 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
                + + L++L   L+  + ++V R + + +    L+    + +  L        K  
Sbjct: 108 EEYKAKLDHLETLMKSLETEKESLVEREKFLKDRESSLEQEKQELRKSLTSRLEEERKEQ 167

Query: 793 DVNFMSHIISEVDS----------KELKSVMDALQK 818
           + NF+  ++ E D+          +ELK  +D L++
Sbjct: 168 NNNFV-KVLQEKDAVIESLKKQNEEELKQDVDRLKE 202


>gi|268530868|ref|XP_002630560.1| C. briggsae CBR-NPP-21 protein [Caenorhabditis briggsae]
          Length = 1964

 Score = 38.2 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL--KSLASFLKVSQGNVVGRVEEI 763
            L+  VSE   +    R+E      +   + G +E+L      + L+    ++  +V+ +
Sbjct: 178 WLMQEVSERDNKVSSLRLE-----LSNKDIQGANERLQYNQQINLLRAQLESLTEKVDML 232

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
                 L       +L    E  +             + +   +E K+  D  + ++ 
Sbjct: 233 TFTNSDLSKRIENTELSKATEIANLEDEIRCQVDLQRVMKTSMEEAKNAADHFKDQLD 290


>gi|313233540|emb|CBY09712.1| unnamed protein product [Oikopleura dioica]
          Length = 394

 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 11/97 (11%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE-------EYRKLQLIHAKRKLQLNVE- 784
             +  +  +LK L +  K         +E++         + ++L+L + K + QL    
Sbjct: 85  EVIQQELTQLKGLTTTQKHQLDEFSDSLEKLTLKEKELHIKNKELELENLKLQNQLQNSQ 144

Query: 785 -DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            DL  H++     ++  ++E D   LK  +D+L+ K+
Sbjct: 145 FDLQHHQLLCEKLVTEALNEEDR--LKGTIDSLKNKL 179


>gi|240254320|ref|NP_176681.4| unknown protein [Arabidopsis thaliana]
 gi|332196194|gb|AEE34315.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 1345

 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           + G   ++ L    E LK     +++ + +    ++++ E  + ++  + K K  L  + 
Sbjct: 78  VKGTELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQK 137

Query: 786 LSCHKIADVNFMSHIISEVDSKEL-------KSVMDALQKKIQSGIIMLVGISKE 833
            +        F +  + +   + +       K+ +++++ +    I  L+  ++E
Sbjct: 138 RAEESFEVEKFRAVELEQAGLEAVQKKDVTSKNELESIRSQHALDISALLSTTEE 192


>gi|255102548|ref|ZP_05331525.1| putative cell surface protein [Clostridium difficile QCD-63q42]
          Length = 522

 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
            +++   K S   +  +++++ +E +    +  K+K ++   +    K+           
Sbjct: 160 DNISKMEKES-KELQEKLDKLNQEIKDKDKLSDKQKDKIKDLEDKIDKLKG-KLEKSKAD 217

Query: 803 EVDSKELKSVMDALQKKIQS 822
           +  S ++K  MD L  KI+ 
Sbjct: 218 KDLSTDMKKEMDKLTDKIKE 237


>gi|222054510|ref|YP_002536872.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
 gi|221563799|gb|ACM19771.1| OmpA/MotB domain protein [Geobacter sp. FRC-32]
          Length = 287

 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 21/61 (34%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A           K L   LK     +   + E+ ++   L+  +A+ K ++     +  
Sbjct: 72  AANKDKEKLAADNKELDKVLKAKSDTLSKNISELRQKVTDLETENARLKDEIANLKKAKE 131

Query: 790 K 790
           +
Sbjct: 132 E 132


>gi|159118276|ref|XP_001709357.1| Axoneme-associated protein GASP-180 [Giardia lamblia ATCC 50803]
 gi|157437473|gb|EDO81683.1| Axoneme-associated protein GASP-180 [Giardia lamblia ATCC 50803]
 gi|213495866|gb|ACJ49153.1| head-stalk protein GHSP-138 [Giardia intestinalis]
          Length = 2124

 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 67/186 (36%), Gaps = 45/186 (24%)

Query: 722  RIEAITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
            RI A+T +   A   L  ++ +LK L   L   +  ++  +    +   +L    +  KL
Sbjct: 907  RIRALTDELHLALDSLNTKEAELKQLKDELS-QKDAIIDNLHLADKATIELNKQISMLKL 965

Query: 780  QLNVEDLSCHKIADVNF-MSHIISEVDSK--ELKSVMDAL-------------------- 816
                      ++ DV   +S +++  D +  +L+  +D L                    
Sbjct: 966  DRESLQEKICELEDVRDKLSALLNSADDERLQLRRELDDLRVQLTDNKRDDPEVISGLQS 1025

Query: 817  --------QKKIQSGIIMLVGISK------EKKASVLIVV---TEDLLDRFNAVDLARLS 859
                    + K+   I+ LVG S       E   +++  +   +  L D+  A +  +  
Sbjct: 1026 QLSSLLSERDKLNKDIVALVGKSNTLERELEHANNLIRHLEDESAALTDKLEARE--KAL 1083

Query: 860  AKVLGG 865
            A+ + G
Sbjct: 1084 AEAIDG 1089


>gi|50355643|dbj|BAD29962.1| Be158 [Babesia equi]
          Length = 991

 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 45/117 (38%), Gaps = 16/117 (13%)

Query: 729 QRARSHLMGQDE--KLKSLASFLKVSQGNVVGRVEEIWE---EYRKLQLIHAKRKLQLNV 783
             A+      +E  KL+     LK           ++ +   E + L+    +RK ++  
Sbjct: 444 DAAKKEAKNLEESVKLEEETKALKTKTEEHNEESRKLIKKEGELKALEQTLEERKTRVAA 503

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDA--LQKKIQSGIIMLVGISKEKKASV 838
            + +  K          + ++D++E +   D   +++ +++  + +V   +  K  +
Sbjct: 504 SEAASDK---------RVKDLDAREAQINADEAKVKEGLEARRLAVVSSEQSVKTQL 551


>gi|301756472|ref|XP_002914084.1| PREDICTED: girdin-like [Ailuropoda melanoleuca]
          Length = 1873

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     +VE + +E  +L+  + K K  L+  
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKVEALEQENSELERENRKLKKTLDSF 682

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 683 KNLTFQLESLEKENSQLDEENL-ELRRNVESLK 714


>gi|224541671|ref|ZP_03682210.1| hypothetical protein CATMIT_00843 [Catenibacterium mitsuokai DSM
            15897]
 gi|224525420|gb|EEF94525.1| hypothetical protein CATMIT_00843 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1165

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 61/198 (30%), Gaps = 48/198 (24%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLAS-------FLKVSQGNVVGR--------VEEIWEE 766
            RI   +G  A   +   +  L+++           K  + ++ G+        +E I E 
Sbjct: 864  RIYINSGYGAWYQISEVEFVLEAVGEDTTLKDLIEKAKEEDLEGKTIASRDEFLEAIIEA 923

Query: 767  YRKLQLIHAKRKLQLNVEDLSCHKIADVNFM---SHIISEVDSKELKSVMDALQKKIQSG 823
             + L     K +  +N    +   + D   +   + + +   +  L    + + K I+  
Sbjct: 924  QKALVAEDIKNEAVINRLKKAIEGLVDAPVVNTDALVEAIAKADALTE--EEVNKAIKKN 981

Query: 824  IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG-------GGGGRPHMAQ 876
            + +      + KA +     +D        +    +AK L           G        
Sbjct: 982  VEVFNKALADAKAVLA----KDASQ-----EEVNEAAKALNDALDGLKVLRG-------- 1024

Query: 877  SGGPNGNKADQAIAGVAS 894
                N    + A+  V+ 
Sbjct: 1025 ----NPEALNAALEAVSK 1038


>gi|260798875|ref|XP_002594425.1| hypothetical protein BRAFLDRAFT_209082 [Branchiostoma floridae]
 gi|229279659|gb|EEN50436.1| hypothetical protein BRAFLDRAFT_209082 [Branchiostoma floridae]
          Length = 461

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           L  +++  + +   L+     V      + ++  E +KL+ ++A+    L  E+     +
Sbjct: 68  LSKREKDKQEVEDKLRAMTEEVAVNDELIGKLGREKKKLEELNAQTLDDLQSEEDKTQNL 127

Query: 792 ADVNF-MSHIISEVD-----SKELKSVMDALQKKIQSGI 824
             +   +   + +++      K++++ +D +++K+++ +
Sbjct: 128 TKLKVKLEQTLDDLEDNLEHDKKIRADVDRVKRKLENDL 166


>gi|70949042|ref|XP_743968.1| regulator of nonsense transcripts [Plasmodium chabaudi chabaudi]
 gi|56523717|emb|CAH78222.1| regulator of nonsense transcripts, putative [Plasmodium chabaudi
           chabaudi]
          Length = 670

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 72/263 (27%), Gaps = 16/263 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +     ++      +   + +        L+                 +  D +   + +
Sbjct: 1   MDHGNDNINTGFVVEFVWKSTAYDRMQLALNEFAFNSFSLSGHLYHKLLGHDIIDEPINY 60

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           +K   S    S +   N     N     +I+N      +             +       
Sbjct: 61  NKKEFSLNSDSKKYGYNKKSNDNFSTSYKIVNYSAPNLAPLNHSQIDAIQKSLNSPLSLI 120

Query: 684 EDGGVHSSALCGGT---HVSSTGEIMLLYIVSESSIRAG--IRRIEAITGQRARSHLMGQ 738
           +        L   T   H+  T     + + + S++       RI   TG +        
Sbjct: 121 QGPPGTGKTLTCATLVYHMHKTKMGGKVLVTAPSNVAVDQLSVRIH-RTGLKVVRLCARS 179

Query: 739 DEKLKSLA---------SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            E + S+A           LK   G  + ++ E+ EE  +L      R  +L +      
Sbjct: 180 RESVSSIADYLYLHNQVKLLKTDVGEELNKLLELKEEVGELSQKDENRLKKLILHAEYKI 239

Query: 790 KIADVNFMSHIISEVDSKELKSV 812
            I      +  +  +D K LK  
Sbjct: 240 LIEADVICTTCVGAMD-KRLKKF 261


>gi|281352969|gb|EFB28553.1| hypothetical protein PANDA_001927 [Ailuropoda melanoleuca]
          Length = 1853

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     +VE + +E  +L+  + K K  L+  
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKVEALEQENSELERENRKLKKTLDSF 682

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 683 KNLTFQLESLEKENSQLDEENL-ELRRNVESLK 714


>gi|227551963|ref|ZP_03982012.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257895444|ref|ZP_05675097.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|293378311|ref|ZP_06624480.1| hypothetical protein CUO_0199 [Enterococcus faecium PC4.1]
 gi|227178868|gb|EEI59840.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257832009|gb|EEV58430.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|292643175|gb|EFF61316.1| hypothetical protein CUO_0199 [Enterococcus faecium PC4.1]
          Length = 259

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQLIHAKRKLQLNVE 784
           +   S+L  +   +K  A    + +  +      I EE +    +L+   +K K+Q  V 
Sbjct: 77  EETVSNLSHKLSSIKLSADDFDIKESELPKEAAAIQEEKKAVLTQLEDAESKLKIQTAVN 136

Query: 785 DLSCHKIADVN------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            L    +++         +   ++  D   ++  M   +      ++M
Sbjct: 137 KLFTKNVSNWQQAVDDVIIKEKLASADVAHVRENMSFFKDSAWKTVVM 184


>gi|260798835|ref|XP_002594405.1| hypothetical protein BRAFLDRAFT_208917 [Branchiostoma floridae]
 gi|229279639|gb|EEN50416.1| hypothetical protein BRAFLDRAFT_208917 [Branchiostoma floridae]
          Length = 461

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           L  +++  + +   L+     V      + ++  E +KL+ ++A+    L  E+     +
Sbjct: 68  LSKREKDKQEVEDKLRAMTEEVAVNDELIGKLGREKKKLEELNAQTLDDLQSEEDKTQNL 127

Query: 792 ADVNF-MSHIISEVD-----SKELKSVMDALQKKIQSGI 824
             +   +   + +++      K++++ +D +++K+++ +
Sbjct: 128 TKLKVKLEQTLDDLEDNLEHDKKIRADVDRVKRKLENDL 166


>gi|260798869|ref|XP_002594422.1| hypothetical protein BRAFLDRAFT_166442 [Branchiostoma floridae]
 gi|229279656|gb|EEN50433.1| hypothetical protein BRAFLDRAFT_166442 [Branchiostoma floridae]
          Length = 461

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           L  +++  + +   L+     V      + ++  E +KL+ ++A+    L  E+     +
Sbjct: 68  LSKREKDKQEVEDKLRAMTEEVAVNDELIGKLGREKKKLEELNAQTLDDLQSEEDKTQNL 127

Query: 792 ADVNF-MSHIISEVD-----SKELKSVMDALQKKIQSGI 824
             +   +   + +++      K++++ +D +++K+++ +
Sbjct: 128 TKLKVKLEQTLDDLEDNLEHDKKIRADVDRVKRKLENDL 166


>gi|126342708|ref|XP_001365584.1| PREDICTED: similar to histidine decarboxylase [Monodelphis
           domestica]
          Length = 1157

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V ++ +   L     + +   IRR+        R      +   K LA        +   
Sbjct: 625 VKTSSKRETLEKAMRNKLEGEIRRLH----DFNRDLRERMETANKQLAEKEHEGSEDTRK 680

Query: 759 RVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            + +++ + ++ Q    K +++L  V   +  +   +      ++   +K +K + D L+
Sbjct: 681 TISQLFAQNKESQREKEKLEMELTAVRSTNEDQRRHIEIRDQALNNAQAKVVK-LEDELK 739

Query: 818 KK 819
           KK
Sbjct: 740 KK 741


>gi|119910231|ref|XP_602307.3| PREDICTED: polyamine modulated factor 1 binding protein 1 [Bos
           taurus]
          Length = 1114

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 49/548 (8%), Positives = 143/548 (26%), Gaps = 44/548 (8%)

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           L +   +    +     E+G+          L +E L    ++         +  D   +
Sbjct: 229 LHHHCKMKEDEVILYEEELGNHNENTGDKLHLAQEQLALAGDKIVSLERSLNLYRDKYQT 288

Query: 375 HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
            L   E+L   V     +  G+     ++      +         Q  +E   R      
Sbjct: 289 SLSNIELLECQVKMLEGELSGIVAQDPENKGDHSKVRIFTSPCMIQEHQETLKRLSEVWQ 348

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS----S 490
            +     + +   L+ K   +  +  +       ++ D            ++        
Sbjct: 349 KVSE--QDDLIQELRNKLACSNALVLEREEALIKLQADFASYTATHRHPPSSSEDCEDIK 406

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
            +   +Q+ +  +     +   +V D          Q  +    +           ++ +
Sbjct: 407 KILKHLQEQKDSQCLHVEEYQNLVKDLRMELESVSEQKKNIMKDMMKLELDLHGLREETS 466

Query: 551 EGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
             +      V     R +   +          ++  +      +LH     +     +  
Sbjct: 467 AHVERKDKEVIIMQRRLQELQTQFTETQKLGLKKDKLLQEKDEMLHELEKELAQVQNNLV 526

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
              +  +  +      +     E +         +   +  + +    +       AA  
Sbjct: 527 KKEMELEKQQCMTNELEIAIQEERQDKCKAEYGHLRAEIKKL-KECLEDAKQQQRLAAQQ 585

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCG---------GTHVSSTGEIMLLYIVSESSIRAG 719
              Y + V + +   ED      +                    ++    + +E  +   
Sbjct: 586 AADYKEEVFMANDNLEDCQRKLQSCICLEKQKAETIQELQRELQKLQKDSLTAEEELAPS 645

Query: 720 IRRIEAITGQ-----RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK----- 769
            +RIE +T +     R       +  +L+   +   +     + R+  I  + R+     
Sbjct: 646 RKRIEELTLEFSEVTRKLELSEKEKRQLQKTLAEQDIKLNEQLDRINHIQHQNREHASSK 705

Query: 770 -------------LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV---M 813
                        L+    + K     + L   ++           ++  + L+ +    
Sbjct: 706 SSLEEQLQEISRLLEDKKEQLKKSKEQQKLVEQELETFRLEGKRREKMSMENLRKMEEEN 765

Query: 814 DALQKKIQ 821
           D L+ +++
Sbjct: 766 DNLKSQVK 773


>gi|66825595|ref|XP_646152.1| hypothetical protein DDB_G0270902 [Dictyostelium discoideum AX4]
 gi|60474864|gb|EAL72801.1| hypothetical protein DDB_G0270902 [Dictyostelium discoideum AX4]
          Length = 1209

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            ++A      +   L+     +K    ++  + + + ++   +++       Q+ + +   
Sbjct: 1062 KKANEISNEKFRTLEYENLMVKEDNKDLQNKNQLLQDKIDSMKVEFENNLNQVQINEKKS 1121

Query: 789  HKIADVNFMSHIISEVDS-------------KELKSVMDALQKKIQS 822
              I +++ +   + + ++             K LK  +D L  K+Q+
Sbjct: 1122 KLIKEIDDLKAKLKKYENDSDHHQIEMEDETKSLKDRIDDLSNKLQN 1168


>gi|166365884|ref|YP_001658157.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|166088257|dbj|BAG02965.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 599

 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 23/195 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H++  A+  +        G   T  G  +D    +P T  +LK I+  +  II + 
Sbjct: 23  HTTSHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDVPEPFTDKDLKDIKKEMVKIINKK 81

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVSSTG 703
           LPV  R     +         +   Y   +       +     G     LC G H+ +T 
Sbjct: 82  LPV-IREQVSREEAEK-RIKAINEVYKLEILAGIQEPITLYHLGDAWWDLCAGPHLDNTS 139

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG----R 759
           E+     +   ++     R     G   ++ L                +   +      +
Sbjct: 140 ELDP-KAIELETVAGAYWR-----GDENKAQLQRIYGTAWE-------NPQQLAEYKRRK 186

Query: 760 VEEIWEEYRKLQLIH 774
            E +  ++RKL    
Sbjct: 187 EEALKRDHRKLGKEL 201


>gi|149640806|ref|XP_001509508.1| PREDICTED: similar to Hook-related protein 1 isoform 1
           [Ornithorhynchus anatinus]
          Length = 1853

 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 18/110 (16%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-----------------GRVEEIWEEYR 768
           I+ +     +  +++ L             +                   R EE+  E  
Sbjct: 575 ISAEARMKDIEKENKILHESIKETSSKLNKIEFEKRQVRKELEHFKEKGERAEELENELH 634

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           +L+  +   + ++    ++C KI  +   +  +   + K LK  +D+L+ 
Sbjct: 635 RLEKENESLQKKITNLKITCEKIESLEQENSDLEVENRK-LKKALDSLKN 683


>gi|149640804|ref|XP_001509593.1| PREDICTED: similar to Hook-related protein 1 isoform 2
           [Ornithorhynchus anatinus]
          Length = 1880

 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 18/110 (16%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-----------------GRVEEIWEEYR 768
           I+ +     +  +++ L             +                   R EE+  E  
Sbjct: 575 ISAEARMKDIEKENKILHESIKETSSKLNKIEFEKRQVRKELEHFKEKGERAEELENELH 634

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           +L+  +   + ++    ++C KI  +   +  +   + K LK  +D+L+ 
Sbjct: 635 RLEKENESLQKKITNLKITCEKIESLEQENSDLEVENRK-LKKALDSLKN 683


>gi|55701146|ref|YP_138363.1| hypothetical protein pKEF9_p02 [Sulfolobus islandicus]
 gi|55650856|emb|CAG38141.1| hypothetical protein [Sulfolobus islandicus]
          Length = 311

 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +++++ L   +K +     G++    +E  K +    K K + N E     K+       
Sbjct: 157 EQRIQQLKVKMKGADKVTRGKISRKLKELYKKRSELYKMKNKTNAELKKFEKV------- 209

Query: 799 HIISEVDSKELKSVMDALQKKIQSG 823
            +I   +  ELK  ++ L+ +I+S 
Sbjct: 210 TLIENEEINELKKKIEELRSQIKST 234


>gi|326912980|ref|XP_003202821.1| PREDICTED: filamin A-interacting protein 1-like, partial [Meleagris
           gallopavo]
          Length = 924

 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           ++ ++     LK    +   +V  + +E  +L+    K K +    +    K+  +    
Sbjct: 335 EKLIEESKKALKSK-SDAEEKVSSVTKERDELK---NKLKAEEEKGNDLASKVNILRKRL 390

Query: 799 HIISEVDSKELKSVMDALQKKIQSG 823
             +  V+ + LK+    L++  +S 
Sbjct: 391 QSLEAVEKEFLKN---KLKETTKSS 412


>gi|298372395|ref|ZP_06982385.1| zinc protease [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275299|gb|EFI16850.1| zinc protease [Bacteroidetes oral taxon 274 str. F0058]
          Length = 975

 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 43/384 (11%), Positives = 105/384 (27%), Gaps = 32/384 (8%)

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +F+G D     +  KE  K+             +  ++ + +  E   +      + V  
Sbjct: 594 EFLGTDKKSAEQISKEFYKIASSFRISVGEEYTTVTIEGLQENFEAAVKLYEDLVLNVKA 653

Query: 516 DQ---TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           D        A       D        ++   +     A+  F +          T   LV
Sbjct: 654 DNEALAALKARLTKSRTDAKANRATIMQALTSYALYGAKNKFNNRLSDAEIESVTAKELV 713

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +   N  + ++ +     L    + +   H             +   T +K     E 
Sbjct: 714 DRVKNLNNVEQTVIYYGPSTLAELTAKLKPLH-------------KVPATFAKVAPKKEF 760

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           K +E   N ++  +  +V           +           +   +       GG   S 
Sbjct: 761 KQVEQTKNQVLFTDYEMVQAETRWIRNTNTY-------NPAENTVISVFNNYFGGGMGSL 813

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           +      S                +A    + A  G +A   +    E + ++   L  +
Sbjct: 814 VFQTIRESKALAYSTYGFYVFPRKKADKYYMMAYVGAQADKFV----EAVAAMNELL-TT 868

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA---DV-NFMSHIISEVDSKE 808
              +   ++    + +K        +  +  + +    +    D+   +   +  +  K+
Sbjct: 869 MPELPANLDLAKVQLKKEIQTERITQDDIIYDYIKAKDLGLNEDIRKTIYQNLDNISMKD 928

Query: 809 LKSVMDALQKKIQSGIIMLVGISK 832
           +++  D    K     ++L    K
Sbjct: 929 IRTFHDTYLSKKPYTYVVLASEEK 952


>gi|241668826|ref|ZP_04756404.1| seryl-tRNA synthetase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877358|ref|ZP_05250068.1| seryl-tRNA synthetase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843379|gb|EET21793.1| seryl-tRNA synthetase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 426

 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
             + ++  R +E+  +   +     KRK +         K+ D+N    +I     K+LK
Sbjct: 35  AKRKDLQERTQELQSQRNTISKEIGKRKSKGEDASDIFAKVNDINDELKVIE----KKLK 90

Query: 811 SVMDALQKKI 820
            + D +   +
Sbjct: 91  DLQDCINNTL 100


>gi|121483248|gb|ABM54070.1| merozoite surface protein 1 42 kDa fragment [Plasmodium hylobati]
          Length = 381

 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
             ++   K     V  +++++ ++ ++ +     R+ ++       ++  ++N +     
Sbjct: 131 NKMSDLYKKQFDAVNEKIKDLEDQIKEQEEEIKIRQEEIQRTSNDTNETDEINQLIAQKE 190

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           E   K L   +++++K+ +S + M    +   K  +
Sbjct: 191 E-SKKYL-PFLNSIKKEYESLVSMATTYTDNLKKFI 224


>gi|73999540|ref|XP_544157.2| PREDICTED: similar to sodium channel associated protein 2 [Canis
            familiaris]
          Length = 1215

 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 735  LMGQDEKLKSLASFL----KVSQGNVVGRVEEIWEEYRKLQL---IHAKRKLQLNVEDLS 787
            L  ++E++K L   +    K +Q  +  +  ++ +   KL+       K K QL +++L 
Sbjct: 1016 LQEREEQIKILQEKMTEIQKCTQEQLDEKSSQLDDIIEKLERHNERKEKLKQQLKIKELE 1075

Query: 788  CHKI 791
              +I
Sbjct: 1076 LEEI 1079


>gi|329957474|ref|ZP_08297949.1| hypothetical protein HMPREF9445_02829 [Bacteroides clarus YIT
           12056]
 gi|328522351|gb|EGF49460.1| hypothetical protein HMPREF9445_02829 [Bacteroides clarus YIT
           12056]
          Length = 292

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 20/123 (16%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEY-------RKLQL 772
           IE I     R  +    +++  L S LK    +   +   VE + +E         +LQ 
Sbjct: 92  IEFI-----RKQMEENKQQIAKLQSMLKSSKTNSSQLKKAVESLTQELNAKTQRIEELQA 146

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A + +++   D +   +  V   S + +E ++K  K+V +    K  +    + G  K
Sbjct: 147 ELASKNIRIQELDAAVTDLNAVK--SELTAENEAKA-KTVAEQ--DKALNTAWFVFGTKK 201

Query: 833 EKK 835
           E K
Sbjct: 202 ELK 204


>gi|313226426|emb|CBY21571.1| unnamed protein product [Oikopleura dioica]
          Length = 738

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 4/116 (3%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-WEEYRKLQLI--HAKRKLQLNVE 784
           G +A      + E ++  A+FLK     V   +E++  +    +Q++    + K ++   
Sbjct: 58  GAQAVPKAAREMEAVRQEANFLKRHMNQVKEGLEDVEQKTNSSIQVLFSIDQIKERVESS 117

Query: 785 DLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
           +LS  K+ +   ++         ++LK++ D + +  QS +I        +K  +L
Sbjct: 118 ELSLKKVDNWAQITQEAENAFTEQDLKTIADKIAQLDQSILIFQGAPDYGEKQKLL 173


>gi|195970356|gb|ACG60665.1| basic helix-loop-helix protein [Nicotiana tabacum]
          Length = 233

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           +L+  A  LK S  N+  +++E+  E  +L+    K K +    +       
Sbjct: 124 QLRGEAQKLKDSNLNLQEKIKELKAEKNELRDEKQKLKAEKEKLEQQLKTTN 175


>gi|88602691|ref|YP_502869.1| multi-sensor signal transduction histidine kinase [Methanospirillum
            hungatei JF-1]
 gi|88188153|gb|ABD41150.1| multi-sensor signal transduction histidine kinase [Methanospirillum
            hungatei JF-1]
          Length = 2072

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 20/139 (14%)

Query: 719  GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-WEEYRKLQLIHA-K 776
            G    E I  +RA   +  Q+E L S    ++ S+  +    EE+     + L+     +
Sbjct: 1074 GTMTWEIIRRKRAEEEISRQNEALSSAYEEIRSSEEELRHNYEELEISRQKILEREKELR 1133

Query: 777  RKLQLNVE---DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             KL+  +    D+S  + A++         +DS EL+ +MD        GI +L     +
Sbjct: 1134 LKLETILTPEHDISEEEFANI---------IDSHELQILMDDFYALTHIGIAIL-----D 1179

Query: 834  KKASVLIVVT-EDLLDRFN 851
             K ++L+    +D+  +F+
Sbjct: 1180 LKGNILVATGWQDICTKFH 1198


>gi|113677036|ref|NP_001038559.1| serine/threonine-protein kinase MRCK alpha [Danio rerio]
 gi|55251365|emb|CAH68979.1| novel protein similar to vertebrate CDC42 binding protein kinase
           [Danio rerio]
          Length = 1716

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 696 GTHVSSTGEIMLLYIVSESSIR-AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           G H++   EI++L    E + R + + R E +     +     +   L      L     
Sbjct: 726 GQHLTHQKEILVLKDKLEKTRRESQVEREEFVC--EYKQKYEREKAHLTDENKKLSAEVE 783

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE-LKSVM 813
            + G+ E++   +R+L+    +   +         +I ++  +  +  E D++  L+++ 
Sbjct: 784 KLNGQFEQLSSSHRQLEEEMRELADKKESVAHWEAQITEI--IQWVSDEKDARGYLQALA 841

Query: 814 DALQKKIQ 821
             + ++++
Sbjct: 842 TKMTEELE 849


>gi|229594553|ref|XP_001031574.3| hypothetical protein TTHERM_00773210 [Tetrahymena thermophila]
 gi|225566781|gb|EAR83911.3| hypothetical protein TTHERM_00773210 [Tetrahymena thermophila
           SB210]
          Length = 612

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 40/94 (42%), Gaps = 11/94 (11%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-EDLS 787
                    Q + L  +++  K     +    + +  E+++L+    + K Q+ V +   
Sbjct: 135 DSVIKAHSDQYQDLAEISNRYKT----LSTSNQNLQNEHKQLEKEQEETKHQIQVFQKYK 190

Query: 788 CHKI----ADVNFMSHIISEVDSK--ELKSVMDA 815
             +I     D+  ++  + E +++  +L+S+++ 
Sbjct: 191 NQEILQLNNDIKELTKKLEEKNNEKMQLQSLVED 224


>gi|290999839|ref|XP_002682487.1| structural maintenance of chromosome 1 [Naegleria gruberi]
 gi|284096114|gb|EFC49743.1| structural maintenance of chromosome 1 [Naegleria gruberi]
          Length = 1214

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 24/65 (36%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            +HL    +         K         VE++ +E ++L+    + + +L  E     KI
Sbjct: 312 INHLENSLKNRSKSMDKKKNQLDKHTKDVEKLEDEIKQLEQERDEMEAKLKEESSEEIKI 371

Query: 792 ADVNF 796
           +  + 
Sbjct: 372 SGADL 376


>gi|219518224|gb|AAI44321.1| CCDC88A protein [Homo sapiens]
          Length = 1796

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K  L+  
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSF 682

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 683 KNLTFQLESLEKENSQLDEENL-ELRRNVESLK 714


>gi|260799587|ref|XP_002594776.1| hypothetical protein BRAFLDRAFT_158782 [Branchiostoma floridae]
 gi|229280012|gb|EEN50787.1| hypothetical protein BRAFLDRAFT_158782 [Branchiostoma floridae]
          Length = 200

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRV 760
           ++    + +E       + IE IT +     L  +++  + +   L+     V      +
Sbjct: 42  QMESKKMKAEQECDEMKKEIETITAK-----LTKREKDKQEVEDKLRAMTEEVAVNDELI 96

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF-MSHIISEVD-----SKELKSVMD 814
            ++  E +KL+ ++A+    L  E+     +  +   +   + +++      K+++S +D
Sbjct: 97  GKLGREKKKLEELNAQTLDDLQSEEDKTQNLTKLKVKLEQTLDDLEDNLEHDKKIRSDVD 156

Query: 815 ALQKKIQSGI 824
            +++K+++ +
Sbjct: 157 RVKRKLENDL 166


>gi|6752407|gb|AAF27714.1|AF071818_1 PspA [Streptococcus pneumoniae]
          Length = 429

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           + + L   +  +  +  E+ ++  +L+ +      +   +D    +  +         + 
Sbjct: 236 IEAKLNKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAEEAEL------DK 289

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + EL++ +  L+K+I +  I+L G   E 
Sbjct: 290 KADELQNKVADLEKEISNLEILLGGADSED 319


>gi|47220555|emb|CAG05581.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1401

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            + R+HL     KL    + LKV++  +  R   + EE + LQ  + + K +    ++S 
Sbjct: 442 DKVRNHLSESLRKL----TVLKVNEKKLSLRYATLLEEVQFLQKENERLKAESTQMEVSV 497

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDA 815
            K           +  + + L+  +D 
Sbjct: 498 TKKVGELQRYKERAAYEVEVLQKTLDE 524


>gi|314055204|ref|YP_004063542.1| putative virus inclusion body [Ostreococcus tauri virus 2]
 gi|313575095|emb|CBI70108.1| putative virus inclusion body [Ostreococcus tauri virus 2]
          Length = 2566

 Score = 38.2 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 760 VEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVDSKELKS 811
           +  + EE R+L  Q    K   + +           +N       +  +   V++  ++ 
Sbjct: 446 INALIEEARQLNTQKKTEKLSKKQDEFRTILQNYNKLNAADKEALIKSVTDNVNANTMRK 505

Query: 812 VMDALQKK 819
           + D L +K
Sbjct: 506 MADDLLQK 513


>gi|194220720|ref|XP_001917582.1| PREDICTED: coiled-coil domain containing 88A [Equus caballus]
          Length = 1852

 Score = 38.2 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           G+RA           K     L+    N+     ++E + +E  +L+  + K K  L+  
Sbjct: 624 GERAEELENELHHLEKE-NELLQKKITNLKITCEKIESLEQENSELERENRKLKKTLDSF 682

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                ++  +   +  + E +  EL+  +++L+
Sbjct: 683 KNLTFQLESLEKENSQLDEENL-ELRRNVESLK 714


>gi|296223213|ref|XP_002757532.1| PREDICTED: GRIP and coiled-coil domain-containing protein 2, partial
            [Callithrix jacchus]
          Length = 1614

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 42/104 (40%), Gaps = 9/104 (8%)

Query: 729  QRARSHLMGQDEKLKSL------ASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQ 780
            +RA +     ++  + L         L     +++ R+E +    + L++     +R   
Sbjct: 968  ERANNFEHHIEDLSRQLRNSTLQCEKLNSDNEDLLARIETLQSNAKLLEVQLLEVQRTKA 1027

Query: 781  LNVEDLSCHKIADVNFMSHIISEVD-SKELKSVMDALQKKIQSG 823
            +  ++L   K+     +    + V+  +EL+  +   +K++Q  
Sbjct: 1028 IVDKELEAEKLQKEQKIKEHATAVNELEELRIQLQKEKKQLQKT 1071


>gi|291520041|emb|CBK75262.1| hypothetical protein CIY_26820 [Butyrivibrio fibrisolvens 16/4]
          Length = 200

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 8/67 (11%), Positives = 26/67 (38%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A +       ++KS+ S        +  R++E+      L+  +A+   ++  + +  
Sbjct: 134 NNAINDKQAAQNEVKSVYSVFGQEIDELQDRIKELTNRNLVLEEENARLSAKVTTKKIKQ 193

Query: 789 HKIADVN 795
           +   ++ 
Sbjct: 194 YYFKEMK 200


>gi|291280670|ref|YP_003497504.1| hypothetical protein DEFDS_P126 [Deferribacter desulfuricans SSM1]
 gi|290755372|dbj|BAI81748.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 130

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            ++ + Q  ++  +   +K S   +  R+E +     +++    + +L++N  + S ++I
Sbjct: 4   YNYYLKQIRQI--IKKEIKSSNNEIKDRLERLKSSNNEIKDRLERLELRMNRLESSNNEI 61

Query: 792 ADVNFMSHIISEVD--SKELKSVMDALQKKIQ 821
            D       +  ++     L+S  + ++ +++
Sbjct: 62  KD------RLERLELRMNRLESSNNEIKDRLE 87


>gi|296085624|emb|CBI29413.3| unnamed protein product [Vitis vinifera]
          Length = 139

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 695 GGTHVSSTGEIML-----LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
             TH+  T  +         I         + R+    G         + EKL+   + L
Sbjct: 6   WRTHLLETSLMGFSLFLGFLIDRMHHYLQKLNRLRGNAG-----ASKEEFEKLQKERAQL 60

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           K  +      ++ + E+   L     K KL+   +D       
Sbjct: 61  KEKEEQASKEIKLLQEQISTLTQDLKKLKLEAEEKDKKVETAE 103


>gi|294656133|ref|XP_458383.2| DEHA2C16016p [Debaryomyces hansenii CBS767]
 gi|199430884|emb|CAG86465.2| DEHA2C16016p [Debaryomyces hansenii]
          Length = 487

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 21/117 (17%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--------------RKLQLIH 774
            + R     +DE L      L+ +   +  ++ E+  E               + L L  
Sbjct: 215 NKLRREFQSKDESLSDEKYNLENTNSRLTKKINELKLELNEITISRDEANMETKNLNLTI 274

Query: 775 AKRKLQLNVEDLSCHKIAD-VNFMSHIIS--EVDSKELKS----VMDALQKKIQSGI 824
            + K +L  ++     +   V+  +  IS  +++ + LK      +D L++KI+S I
Sbjct: 275 DELKDKLQSKEADIKDLEGKVSIHTQSISERDLEIESLKQNHESTIDELKQKIESLI 331


>gi|167394716|ref|XP_001741069.1| myosin-2 heavy chain, non muscle [Entamoeba dispar SAW760]
 gi|165894533|gb|EDR22507.1| myosin-2 heavy chain, non muscle, putative [Entamoeba dispar
           SAW760]
          Length = 1287

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWE-------EYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            + +     K    ++   +E+  +       E + L+L     K +L  ++   +K  D
Sbjct: 718 VVNAATESYKKQIDDLNKTIEDAKDQEKDLRDEIKDLRLDIVDLKGELESKEQEVNKAGD 777

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQ 821
                 ++ + +++ LK  ++ L+ KI+
Sbjct: 778 ----KLVLIDDENQSLKQTINDLKLKIK 801


>gi|123412552|ref|XP_001304086.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121885514|gb|EAX91156.1| hypothetical protein TVAG_497970 [Trichomonas vaginalis G3]
          Length = 1684

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 43/87 (49%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +    ++++ L+   +    +V+ +++ + +E +KL+  + +++ +L         + ++
Sbjct: 545 VSDLKKQIEDLSKQKENENSDVLQKLDNLQKENQKLKEENEEKESELQKLKQENENLKNI 604

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQ 821
           +       +    EL+ +++ L+K+ +
Sbjct: 605 DAQKVTYDDEKVSELQKIIEDLKKENE 631


>gi|329767769|ref|ZP_08259285.1| phage minor structural protein GP20 [Gemella haemolysans M341]
 gi|328838870|gb|EGF88464.1| phage minor structural protein GP20 [Gemella haemolysans M341]
          Length = 189

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             Q+ +  L  +++ LK      K     +    +   E  + L+ +  +        D+
Sbjct: 33  AKQQVKLELTAENDTLKEQLESQKNKLEELTKSNDVNSEAKQALEKLQEEYNQFKVDSDI 92

Query: 787 SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823
              +I   N ++  + +V   DS  L  ++D  + ++   
Sbjct: 93  KLAQINKTNAIALALKDVKAHDSDVLMKLIDVDKVELGED 132


>gi|330805402|ref|XP_003290672.1| hypothetical protein DICPUDRAFT_95188 [Dictyostelium purpureum]
 gi|325079202|gb|EGC32814.1| hypothetical protein DICPUDRAFT_95188 [Dictyostelium purpureum]
          Length = 884

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +EKL  L S LK     +  + E++ E+ ++L+    K+   +  E+    ++      S
Sbjct: 545 NEKLNQLESELKEKDQQLKEKDEQLKEKEKQLE-DLNKQDDAIKKEEELKQQLEKAKEDS 603

Query: 799 HIISEVDSKELKSVMDALQK 818
             + + + KEL    + L++
Sbjct: 604 QHLEKAN-KELNEQFEKLKQ 622


>gi|313240532|emb|CBY32864.1| unnamed protein product [Oikopleura dioica]
          Length = 420

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 4/116 (3%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-WEEYRKLQLI--HAKRKLQLNVE 784
           G +A      + E ++  A+FLK     V   +E++  +    +Q++    + K ++   
Sbjct: 58  GAQAVPKAAREMEAVRQEANFLKRHMNQVKEGLEDVEQKTNSSIQVLFSIDQIKERVESS 117

Query: 785 DLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
           +LS  K+ +   ++         ++LK++ D + +  QS +I        +K  +L
Sbjct: 118 ELSLKKVDNWAQITQEAENAFTEQDLKTIADKIAQLDQSILIFQGAPDYGEKQKLL 173


>gi|309364643|emb|CAP24971.2| CBR-PME-1 protein [Caenorhabditis briggsae AF16]
          Length = 2120

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN---VVGRVEEIWEEYRKLQLIHAKRK 778
            R+E +    A++     +++L S  + L++S      +  ++ E+ ++  +LQ  + +  
Sbjct: 1936 RLE-VIQTAAKAQNKRLEDELSSTMALLQLSTEKTDCLEKKIVELQQQTDELQQKNIELD 1994

Query: 779  LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL---QKKI 820
             +L         +AD+  ++  I   +++E   +++ L   ++K+
Sbjct: 1995 AELAKSTRLKEVVADLEKINKDIQVENAEERTGLVNELIDAKQKL 2039


>gi|257453075|ref|ZP_05618374.1| putative scaffolding protein [Fusobacterium sp. 3_1_5R]
          Length = 196

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLN 782
           +T  R    +  +D     ++   K     +       +E+ E+  KLQ  +     +  
Sbjct: 27  VTKTRLDEVIAERDTLKTQVSERDK-QLKELEKAAGDNKELKEQIEKLQKDNKDAADKYK 85

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +         V+         + K +K+++D  + +I+ G I+
Sbjct: 86  KDLHDLQVNNAVDLAISGAKGKNGKAIKALLDLEKAEIKDGKII 129


>gi|51317217|gb|AAT99868.1| FOG precursor [Streptococcus sp. 'group G']
          Length = 598

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 11/90 (12%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             +    + +  +   L         R   + EE  K Q   A+++ +L  +      + 
Sbjct: 157 DTVKKHQKLVDEITKKLG---EEETER-HSLQEELNKAQQELAQKQQELKDKQADYDLVV 212

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + +  +        KE + ++D + KK+  
Sbjct: 213 ETHAYTV-------KEHQKLVDEITKKLGE 235


>gi|322705308|gb|EFY96895.1| hypothetical protein MAA_07708 [Metarhizium anisopliae ARSEF 23]
          Length = 439

 Score = 38.2 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 11/76 (14%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-----------EIWEEYRKLQLIHAKR 777
           + A +     + ++  L + +K    N+  R++           ++ EE +KL   + K 
Sbjct: 296 EAAENAREYTETEIGKLNANIKTKTDNLGKRIKESFALRDKEIDQLKEENKKLGEENLKL 355

Query: 778 KLQLNVEDLSCHKIAD 793
             +        +KI  
Sbjct: 356 SKEFAKLLKIVNKIKG 371


>gi|270002051|gb|EEZ98498.1| hypothetical protein TcasGA2_TC000998 [Tribolium castaneum]
          Length = 608

 Score = 38.2 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 700 SSTGEIMLLYIV-SESSIRAGIRR----IEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
             T ++  +     E  +    +R    +E    +RA       ++++K++   ++ SQ 
Sbjct: 338 PDTIDVQQMKAQAREEKLAKQQQREKLQLEIAARERAEKKQQEYEDRIKAMQEEMERSQA 397

Query: 755 NVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM-----SHIISEVDS 806
           N++     +  + E+ ++LQ    + + + N       ++ +   M       +  E+ +
Sbjct: 398 NLLEAQEMIRRLEEQLKQLQAAKEELEKRQNELQAMMERLEESKNMEAAERQKLEEEIQA 457

Query: 807 KEL--KSVMDALQKKIQSG 823
           K+L  + + D +  K    
Sbjct: 458 KQLEVQRIQDEVTAKDNET 476


>gi|213389194|gb|ACJ45749.1| M protein [Streptococcus pyogenes]
          Length = 220

 Score = 38.2 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 8/99 (8%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLS 787
             L  + ++L S    L     ++  +   + ++ R+L     +   Q     L ++   
Sbjct: 70  EDLTQEKQRLTSENRGLTKENEDLTQKNHRLTQDNRELTKEKEELSKQKETLGLALDKTI 129

Query: 788 CHKIADVNFMSHIISEVD--SKELKSVMDA-LQKKIQSG 823
             KI   N     I E+   +K LK  +D  +++KI+S 
Sbjct: 130 DEKIKSDNGHKKEIGELSNVNKTLKRALDKTIEEKIKSD 168


>gi|148704639|gb|EDL36586.1| ninein, isoform CRA_a [Mus musculus]
          Length = 2084

 Score = 38.2 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
              E+ L     +   R    R+ A+  Q+       ++E+LK++   L+++ G +  +VE
Sbjct: 1499 IAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVE 1558

Query: 762  EIWEEYRKLQLIHAKRKLQL-------NVEDLSCHKIADVN-FMSHIISEVDSK--ELKS 811
             +  E  KLQ  ++  + ++       ++ +L   ++      +   I  ++ +   +++
Sbjct: 1559 LLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQT 1618

Query: 812  VMDALQKKIQS 822
            +++ L+K++  
Sbjct: 1619 MVEKLKKQVSD 1629


>gi|62321281|dbj|BAD94497.1| hypothetical protein [Arabidopsis thaliana]
          Length = 316

 Score = 38.2 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLS 787
           RS L+  +E   +L   +K  ++  +  +VE++ +E  ++Q + + ++ Q   +    + 
Sbjct: 117 RSALLRAEELEIALMEIVKEDNRRQLSAKVEQLEQEMAEVQRLLSDKQEQEGAMLQVLMR 176

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   V   + I +E D++  +     LQ+K +  +  L 
Sbjct: 177 VEQEQKVTEDARIFAEQDAEAQRYAAQVLQEKYEEAVAALA 217


>gi|7329632|emb|CAB82697.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score = 38.2 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLS 787
           RS L+  +E   +L   +K  ++  +  +VE++ +E  ++Q + + ++ Q   +    + 
Sbjct: 615 RSALLRAEELEIALMEIVKEDNRRQLSAKVEQLEQEMAEVQRLLSDKQEQEGAMLQVLMR 674

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   V   + I +E D++  +     LQ+K +  +  L 
Sbjct: 675 VEQEQKVTEDARIFAEQDAEAQRYAAQVLQEKYEEAVAALA 715


>gi|47228744|emb|CAG07476.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1034

 Score = 38.2 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 47/158 (29%), Gaps = 13/158 (8%)

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
             T+ M  +   +S        +     R+++V      +    L G  H          
Sbjct: 546 EQTKAMITQVCSSSFLMPAFRFQ-GRITRLMNVSSSSQVIEELNLRGAVHHGR------- 597

Query: 709 YIVSESSIRAGIR----RIEAITGQ-RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            + +E +    +R    R++A+  +  A      +    K   S LK  +  +  ++   
Sbjct: 598 KVHAEEACEKRLREIDERLKALQKETAALDRRDNELLAEKKHLSELKGKRRQLEQKISTK 657

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
            +  R+++      K           ++         +
Sbjct: 658 QDSLRQMEQNITDLKKIEEETKGKVSEVNSQKVAMVKV 695


>gi|324500000|gb|ADY40014.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1854

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G + R  L   + +   LA  +++ +  +  + + I +  +   +   KR+ Q  ++ L 
Sbjct: 752 GDKHRLDLERLENERDELARRVQLLEDELAEK-QRIIDRQKT-DIEDLKRQYQAEIDRLK 809

Query: 788 CHKIA-DVNFMSHIISEVD-----SKELKSVMDALQKKI 820
              +  +  + + +  E D      + LK+  D L+ KI
Sbjct: 810 AELVNLETKYQNELEDERDQHQHEIEALKAAEDDLRNKI 848


>gi|225871446|ref|YP_002747393.1| cell surface-anchored protein [Streptococcus equi subsp. equi 4047]
 gi|225700850|emb|CAW95581.1| putative cell surface-anchored protein [Streptococcus equi subsp.
           equi 4047]
          Length = 673

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L     +   L+  L   +  +  +++E+ ++  +      K K +L     +  ++
Sbjct: 341 LKDLQDSASQGSELSKQLLKEKEELTTKLQELQKQAEEKTTEIEKLKQELEANKQNSGQL 400

Query: 792 A--------DVNFMSHIISEVDSKELKSVMDALQKKIQ 821
                     +N +   + + +  ELK   + L+++ +
Sbjct: 401 GQQEQKLQEQLNKVQKELKQKEM-ELKQAQEQLKQEQK 437


>gi|221132099|ref|XP_002162017.1| PREDICTED: similar to leucine zipper protein 1, partial [Hydra
           magnipapillata]
          Length = 740

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            +L    +K +     LK  +     +++ + EE  +L       + +L++  L   K  
Sbjct: 405 ENLSDNIKKFEEKLRILKQEKDLDDEKIKVLSEENNQLNKKQNILEEELSIIKLELSKAN 464

Query: 793 DVNFMSHIISEVDSKEL-------KSVMDALQKKIQSGIIMLV 828
           ++      + +  SKEL       +  ++  + K+   I MLV
Sbjct: 465 ELAEKRKNLLDASSKELHSEAEAHRLKLEETKNKLGDDIRMLV 507


>gi|145549576|ref|XP_001460467.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428297|emb|CAK93070.1| unnamed protein product [Paramecium tetraurelia]
          Length = 527

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 36/386 (9%), Positives = 108/386 (27%), Gaps = 14/386 (3%)

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           +      F + +     + +   +       ++   +L  ++    +I    L       
Sbjct: 115 SSNMRGKFIEPILMLEEKDQETLMHFLKNHLDESEENLTNEWQEENYI--QNLVQKMDEI 172

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           E      +K   +      S+  A+     +V+      ++  + +      +   +  D
Sbjct: 173 ESYNTELKKQLNESEEKKKSLKSAL--DDALVQLENKDMEIRALTESKCHLEKCLEEKMD 230

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                 +  ++    ++++ +       I +     T+   +     Q + +L  N    
Sbjct: 231 FQHEYKESEKIHQKCLEQEHKLAQYELIIEDFKRKETQFIQLKEEYQQYKFKLQENEKLE 290

Query: 591 HLLHHAL-STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
             +        L   V Q G       +     + K +   + +  E  +N  +      
Sbjct: 291 QKIESLQERRELDKDVYQKGKERYEKEITTLKQNIKELLLQQSELKEAKLNLELELQQKQ 350

Query: 650 VTRIMNREDAIA---------SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
                ++E                  L  T +     +  V        S  +    ++ 
Sbjct: 351 ARFERSQEQIKNLETEYGQKIRELQDLFETLHQAEEEMPKVASNTNQQLSQEMKLSANLK 410

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +       YI     +   I+ ++A   ++         + L             +  ++
Sbjct: 411 NENFEREYYIKENHKLEEKIKELQAKLNEKEMEDESKNQKSLFESQLQQSQQISLLTDKI 470

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL 786
           ++  E  ++L+  + + K Q   + +
Sbjct: 471 KQFQEHNQQLKKQNEELKKQTQNKKV 496


>gi|123482486|ref|XP_001323795.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121906666|gb|EAY11572.1| hypothetical protein TVAG_006470 [Trichomonas vaginalis G3]
          Length = 613

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIE  T    R+      E +  LA     +   ++    E+ ++   LQ    K K +
Sbjct: 227 RRIEG-TKNEIRAIAGQDFENIPELARTYNDTMKKILEEETELTKQLWNLQSQLEKEKKE 285

Query: 781 LNVEDLSCHKIADVNF-MSHIISEVDSKELKSVMDALQKKI 820
                L   K+ D    ++ +  E+++K     +  L+ ++
Sbjct: 286 QVQMGLLYQKVKDHPIRVAQLTEEMEAK-----ISQLRSQL 321


>gi|14245719|dbj|BAB56154.1| kinesin-like protein 11 [Giardia intestinalis]
          Length = 958

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 729 QRARSHLMGQDEKL---KSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNV 783
           Q+A   +      L   +     LK++    V +V E+ EE  +L  +++  + K ++N 
Sbjct: 362 QQATKEMERVTALLVSGEQKVEKLKLALNKTVEKVNELHEEKCRLYEKIVLGRDKEKINA 421

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             L   +    + +   +  +D   L+ ++D  +  I S II
Sbjct: 422 AQLDHLRANGASLILENVFGLD--SLRHMID--KSGISSAII 459


>gi|67471199|ref|XP_651551.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56468301|gb|EAL46164.1| hypothetical protein EHI_127010 [Entamoeba histolytica HM-1:IMSS]
          Length = 145

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 20/114 (17%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH- 789
              ++  +    K     ++  +  +  ++E + EE  +        + QLN E ++   
Sbjct: 10  VDQYVQMKLALEK--IEQMENEKKELKTKIEHLSEENFQYVKEIENLRKQLNEEKINKEV 67

Query: 790 ---KIADVNFMSHIISEV-------------DSKELK-SVMDALQKKIQSGIIM 826
              ++A +  + + +                D   L+  + D LQ K + GI+ 
Sbjct: 68  SKIELAKMQGVIYKLEGEKSILIYQVDSLKNDMSSLQVKLNDLLQNKKEEGIVF 121


>gi|159113624|ref|XP_001707038.1| Kinesin-5 [Giardia lamblia ATCC 50803]
 gi|157435140|gb|EDO79364.1| Kinesin-5 [Giardia lamblia ATCC 50803]
          Length = 1066

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 729 QRARSHLMGQDEKL---KSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNV 783
           Q+A   +      L   +     LK++    V +V E+ EE  +L  +++  + K ++N 
Sbjct: 470 QQATKEMERVTALLVSGEQKVEKLKLALNKTVEKVNELHEEKCRLYEKIVLGRDKEKINA 529

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             L   +    + +   +  +D   L+ ++D  +  I S II
Sbjct: 530 AQLDHLRANGASLILENVFGLD--SLRHMID--KSGISSAII 567


>gi|322516542|ref|ZP_08069458.1| SMC family domain protein [Streptococcus vestibularis ATCC 49124]
 gi|322124930|gb|EFX96350.1| SMC family domain protein [Streptococcus vestibularis ATCC 49124]
          Length = 1177

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 20/128 (15%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            +  + + L +  + +KV   +   +VE +  + + LQ      K+      L   K+  
Sbjct: 672 FIKPELDALTAEINQIKVQLSDSEAKVEALKTKRKALQKELDDLKVDGENARLQEQKLDL 731

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
            +     +SEV+    ++++D+ ++                 A++     +D  ++F A 
Sbjct: 732 EH--QQALSEVEKN--RTLVDSFKQD----------SQGTDGANL-----QDKAEQFKA- 771

Query: 854 DLARLSAK 861
           +LA++++K
Sbjct: 772 ELAQIASK 779


>gi|316977537|gb|EFV60625.1| putative PWI domain protein [Trichinella spiralis]
          Length = 936

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+   G RR  + +  R         E+ K L    +  + N + R+E++  E R+ +  
Sbjct: 376 STPETGSRRRRSPSADRLLETSEDAREREK-LERKAREKEKNYLERLEKL--EAREKRKA 432

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
             + K     +     ++AD+  M   + +
Sbjct: 433 KERLKQAEKEKRRKKEQLADIKIMQEFLED 462


>gi|296221255|ref|XP_002756655.1| PREDICTED: uncharacterized protein C10orf118-like isoform 2
           [Callithrix jacchus]
 gi|296221257|ref|XP_002756656.1| PREDICTED: uncharacterized protein C10orf118-like isoform 3
           [Callithrix jacchus]
          Length = 899

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 44/97 (45%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           T ++  + +   + +++ L   +K S+  +V +        ++L    A+R  Q N +  
Sbjct: 244 TEKQHMNTIKQLESRIEELNKEVKASKDKLVAQDIAAKNAVQQLHKEMAQRLEQANKKCE 303

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
              +  +   M ++  E +S +L+   + L+KK++  
Sbjct: 304 EARQEKEAMVMKYVRGEKESLDLRKEKETLEKKLRDA 340


>gi|148704640|gb|EDL36587.1| ninein, isoform CRA_b [Mus musculus]
          Length = 2081

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
              E+ L     +   R    R+ A+  Q+       ++E+LK++   L+++ G +  +VE
Sbjct: 1487 IAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVE 1546

Query: 762  EIWEEYRKLQLIHAKRKLQL-------NVEDLSCHKIADVN-FMSHIISEVDSK--ELKS 811
             +  E  KLQ  ++  + ++       ++ +L   ++      +   I  ++ +   +++
Sbjct: 1547 LLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQT 1606

Query: 812  VMDALQKKIQS 822
            +++ L+K++  
Sbjct: 1607 MVEKLKKQVSD 1617


>gi|13022048|gb|AAK11618.1| M71 protein [Streptococcus pyogenes]
          Length = 192

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 8/99 (8%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLS 787
             L  + ++L S    L     ++  +   + ++ R+L     +   Q     L ++   
Sbjct: 78  EDLTQEKQRLTSENRGLTKENEDLTQKNHRLTQDNRELTKEKEELSKQKETLGLALDKTI 137

Query: 788 CHKIADVNFMSHIISEVD--SKELKSVMDA-LQKKIQSG 823
             KI   N     I E+   +K LK  +D  +++KI+S 
Sbjct: 138 DEKIKSDNGHKKEIGELSNVNKTLKRALDKTIEEKIKSD 176


>gi|325954605|ref|YP_004238265.1| seryl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323437223|gb|ADX67687.1| seryl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 422

 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 13/104 (12%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L   ++  K + +  K  Q     +++E   E +               +DL     A +
Sbjct: 50  LAESNKLSKEIGNLFKSGQTEDANKLKEQTTELKSSSKEL---------QDLLSEYEASI 100

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             + + I  V +     ++ A + +  + I+   G +  KK  +
Sbjct: 101 QNILYQIPNVPN----ELVKAGKDENDNEIVFSSGDASPKKGYL 140


>gi|226328989|ref|ZP_03804507.1| hypothetical protein PROPEN_02891 [Proteus penneri ATCC 35198]
 gi|225202175|gb|EEG84529.1| hypothetical protein PROPEN_02891 [Proteus penneri ATCC 35198]
          Length = 320

 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 45/111 (40%), Gaps = 11/111 (9%)

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           V  ++++  EE  +++   A+ +    + ++  +   +   +   +    ++E   +++ 
Sbjct: 33  VEKKIDKEVEEENRIKKKKAEEEADKLIREIKVNAEKESKLIIDKLESKSNEE--DIINI 90

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           L +              E K S +I   ++++ + N ++L     K +  G
Sbjct: 91  LSE---------YSNDSENKISNIISSMDEIVKKHNEINLIEEEIKEILSG 132


>gi|224372069|ref|YP_002606234.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
 gi|223694788|gb|ACN18070.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
          Length = 325

 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 14/104 (13%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++AR  +    EK+  L + +K+        ++ + EE + L    A  +       +  
Sbjct: 87  EQARDAIKAAQEKVVELNANIKMDAEQ----IKNLQEENKALFKQIAGLEETAESLAVVK 142

Query: 789 HKIAD--------VNFMSHIISEVDSKEL--KSVMDALQKKIQS 822
               D        V  ++  ++ V  + +  +  +D L++++Q 
Sbjct: 143 QGFEDQRNALETKVADLTEKLAGVSDENIAFRKTIDTLKEELQK 186


>gi|238481843|ref|XP_002372160.1| hypothetical protein AFLA_072420 [Aspergillus flavus NRRL3357]
 gi|220700210|gb|EED56548.1| hypothetical protein AFLA_072420 [Aspergillus flavus NRRL3357]
          Length = 1839

 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV---ED 785
             R  + +   +E+ K + + LK+++  +      I E+  KLQ    + + +L     ED
Sbjct: 1667 DRQIASIQKLEEESKKIETKLKLARQELKKNKGRITEKETKLQKEVERLQGELKTRPFED 1726

Query: 786  LSCHKIADVNFMSHIIS--EVDSKELKSVMDALQKKIQSGIIML 827
                K+ D   ++  I   +    E+K+ +D   +  Q  I +L
Sbjct: 1727 AYKAKLQDHESIAAQIQWIQKKLDEIKTGIDQATQAAQESIRVL 1770


>gi|255934452|ref|XP_002558405.1| Pc12g16070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583024|emb|CAP81234.1| Pc12g16070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1212

 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            R    L    +++ + +   K     +  RVE++ EE R LQ  +   +  L  +
Sbjct: 399 DRVEEDLRELQDEISNKSFTTKGLSRQMEDRVEKLEEEIRDLQRENDALRTGLESK 454


>gi|194225251|ref|XP_001916678.1| PREDICTED: similar to Uncharacterized protein C14orf145 [Equus
           caballus]
          Length = 1034

 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 725 AITGQRARSHLMGQDEKLKSLASF---LKVSQGNVVGRVEEIWEEYRKLQLIHAKRK--- 778
              G  +   L  +++KL  + +    L++   + V  +  +  E +K   I ++ K   
Sbjct: 482 FQCGATSEEELHCKEQKLSDVKAHQADLELEVKDSVDTISRLESELKKQNKIQSQMKVEK 541

Query: 779 --LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             L+  + +L   +  D   +  +   +  K+L ++   L  K+
Sbjct: 542 THLEEEIAELKKSQAKDKAQLLEMQEAI--KDLSAIRADLANKL 583


>gi|156841725|ref|XP_001644234.1| hypothetical protein Kpol_1051p25 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114872|gb|EDO16376.1| hypothetical protein Kpol_1051p25 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1968

 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVE----------EIWEEYRKLQLIHAKRKLQLNVEDLS 787
           ++ +L+ +   LKV    + G+ +          E+ E+  KL+LI+ K ++     +  
Sbjct: 896 KNNELEQIRELLKVETKKLEGKNQLLQTSKNAELELSEKLEKLKLINDKLEISKIAIEDE 955

Query: 788 CHKIAD-VNFMSHIISEV--DSKELKS 811
             +I D +  +S  I +   ++K LK 
Sbjct: 956 NSRINDKIKIISEEIEKYLKENKNLKE 982


>gi|126723142|ref|NP_001075836.1| rho-associated protein kinase 1 [Oryctolagus cuniculus]
 gi|47605964|sp|O77819|ROCK1_RABIT RecName: Full=Rho-associated protein kinase 1; AltName: Full=Corneal
            epithelial Rho-associated-Ser/Thr kinase 1; AltName:
            Full=HEBM1; AltName: Full=Rho-associated,
            coiled-coil-containing protein kinase 1; AltName:
            Full=cAMP-dependent protein kinase ROCK-I; Short=CePKA;
            AltName: Full=p160 ROCK-1; Short=p160ROCK
 gi|3628755|gb|AAC36189.1| corneal epithelial Rho-associated-ser/thr kinase [Oryctolagus
            cuniculus]
          Length = 1354

 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 5/125 (4%)

Query: 704  EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            E     +  ES   A   R E      A S L   +  L      L+     +  ++ + 
Sbjct: 910  EEQYFELTQESKKAASRNRQEITDKDHAVSRLEETNSILTKDIELLRKENEELTDKMRKS 969

Query: 764  WEEYR-KLQLIHAKRKL--QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD--ALQK 818
             EEY+ + +   +  K   + N+      K   VN ++ I++  D K  K   +   L+K
Sbjct: 970  EEEYKLQKEEEISNLKATYEKNINTERTLKTQAVNKLAEIMNRKDFKIDKKKANTQDLRK 1029

Query: 819  KIQSG 823
            K +  
Sbjct: 1030 KEKEN 1034


>gi|322697547|gb|EFY89326.1| spindle-pole body protein (Pcp1), putative [Metarhizium acridum
           CQMa 102]
          Length = 1300

 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            RA S L    E++ + +   K     V  +V  + EE  K    +A  + +L   +   
Sbjct: 407 DRAESDLEELQEEMANKSVVTKGLSRQVEEKVSRLQEELDKSGKEYADLEKELAGANEEN 466

Query: 789 HK 790
            +
Sbjct: 467 EQ 468


>gi|224154259|ref|XP_002188233.1| PREDICTED: similar to synaptonemal complex protein 1 [Taeniopygia
           guttata]
          Length = 948

 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
               +  +++ + LK    N    +EE+ +E + L+        + N  +        VN
Sbjct: 396 QEAYDHFENIMNNLKKQVENKTKCIEELQQENKVLKKKITAESKKTNSYE------GKVN 449

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQ 821
            +   I  ++ K+ K  +D  QK I+
Sbjct: 450 KLQLEIENMN-KQHKEAVDIYQKDIE 474


>gi|297485405|ref|XP_002694954.1| PREDICTED: polyamine modulated factor 1 binding protein 1 [Bos
           taurus]
 gi|296478170|gb|DAA20285.1| polyamine modulated factor 1 binding protein 1 [Bos taurus]
          Length = 1094

 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 49/548 (8%), Positives = 143/548 (26%), Gaps = 44/548 (8%)

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           L +   +    +     E+G+          L +E L    ++         +  D   +
Sbjct: 209 LHHHCKMKEDEVILYEEELGNHNENTGDKLHLAQEQLALAGDKIVSLERSLNLYRDKYQT 268

Query: 375 HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
            L   E+L   V     +  G+     ++      +         Q  +E   R      
Sbjct: 269 SLSNIELLECQVKMLEGELSGIVAQDPENKGDHSKVRIFTSPCMIQEHQETLKRLSEVWQ 328

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS----S 490
            +     + +   L+ K   +  +  +       ++ D            ++        
Sbjct: 329 KVSE--QDDLIQELRNKLACSNALVLEREEALIKLQADFASYTATHRHPPSSSEDCEDIK 386

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
            +   +Q+ +  +     +   +V D          Q  +    +           ++ +
Sbjct: 387 KILKHLQEQKDSQCLHVEEYQNLVKDLRMELESVSEQKKNIMKDMMKLELDLHGLREETS 446

Query: 551 EGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
             +      V     R +   +          ++  +      +LH     +     +  
Sbjct: 447 AHVERKDKEVIIMQRRLQELQTQFTETQKLGLKKDKLLQEKDEMLHELEKELAQVQNNLV 506

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
              +  +  +      +     E +         +   +  + +    +       AA  
Sbjct: 507 KKEMELEKQQCMTNELEIAIQEERQDKCKAEYGHLRAEIKKL-KECLEDAKQQQRLAAQQ 565

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCG---------GTHVSSTGEIMLLYIVSESSIRAG 719
              Y + V + +   ED      +                    ++    + +E  +   
Sbjct: 566 AADYKEEVFMANDNLEDCQRKLQSCICLEKQKAETIQELQRELQKLQKDSLTAEEELAPS 625

Query: 720 IRRIEAITGQ-----RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK----- 769
            +RIE +T +     R       +  +L+   +   +     + R+  I  + R+     
Sbjct: 626 RKRIEELTLEFSEVTRKLELSEKEKRQLQKTLAEQDIKLNEQLDRINHIQHQNREHASSK 685

Query: 770 -------------LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV---M 813
                        L+    + K     + L   ++           ++  + L+ +    
Sbjct: 686 SSLEEQLQEISRLLEDKKEQLKKSKEQQKLVEQELETFRLEGKRREKMSMENLRKMEEEN 745

Query: 814 DALQKKIQ 821
           D L+ +++
Sbjct: 746 DNLKSQVK 753


>gi|256086043|ref|XP_002579216.1| rab6-interacting protein 2/elks/erc/cast [Schistosoma mansoni]
 gi|238664634|emb|CAZ35455.1| rab6-interacting protein 2/elks/erc/cast, putative [Schistosoma
            mansoni]
          Length = 1461

 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 15/108 (13%)

Query: 682  EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               D         G TH+S   +     +  E        RI               +++
Sbjct: 962  GNYDNVPLYGTTSGTTHLSREMD----RLHRECENLQNQLRIS-----------QESEQE 1006

Query: 742  LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
             +SL   LK    N+   +E+  E+ ++L+    +   +L        
Sbjct: 1007 SRSLVDNLKNDIKNLTNEIEQFKEQIKELEKQKMEYNNELTKTQRELQ 1054


>gi|289192395|ref|YP_003458336.1| chromosome segregation protein SMC [Methanocaldococcus sp.
           FS406-22]
 gi|288938845|gb|ADC69600.1| chromosome segregation protein SMC [Methanocaldococcus sp.
           FS406-22]
          Length = 1169

 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L     + +S+   LK S+  +   + +   E  KL+      +  +N ++    K  
Sbjct: 373 ERLKEAIAESESIIKHLKKSEMEIADEIAKNQNELYKLKKELNDLENLINRKNFEIEKNN 432

Query: 793 D-VNFMSHI---ISEVDSKEL 809
           + +  +      + +VD+K L
Sbjct: 433 EMIKKLKEELESVEDVDTKPL 453


>gi|6752405|gb|AAF27713.1|AF071817_1 PspA [Streptococcus pneumoniae]
          Length = 502

 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 49/118 (41%), Gaps = 15/118 (12%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           +++ + LK  +  +  +  E+ ++  +L+ +      +   +D    + A+      +  
Sbjct: 246 EAIEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAAEAELNKKV-- 303

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARL 858
               + L++ +  L+K+I +  I+L G   E         T  L ++  A   +LA+ 
Sbjct: 304 ----ESLQNKVADLEKEISNLEILLGGADSEDD-------TAALQNKLAAKQAELAKK 350


>gi|5042434|gb|AAD38273.1|AC006193_29 Hypothetical protein [Arabidopsis thaliana]
          Length = 1313

 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           + G   ++ L    E LK     +++ + +    ++++ E  + ++  + K K  L  + 
Sbjct: 46  VKGTELQTQLNQIQEDLKKADEQIELLKKDKAKAIDDLKESEKLVEEANEKLKEALAAQK 105

Query: 786 LSCHKIADVNFMSHIISEVDSKEL-------KSVMDALQKKIQSGIIMLVGISKE 833
            +        F +  + +   + +       K+ +++++ +    I  L+  ++E
Sbjct: 106 RAEESFEVEKFRAVELEQAGLEAVQKKDVTSKNELESIRSQHALDISALLSTTEE 160


>gi|37360452|dbj|BAC98204.1| mKIAA1565 protein [Mus musculus]
          Length = 2081

 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
              E+ L     +   R    R+ A+  Q+       ++E+LK++   L+++ G +  +VE
Sbjct: 1487 IAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVE 1546

Query: 762  EIWEEYRKLQLIHAKRKLQL-------NVEDLSCHKIADVN-FMSHIISEVDSK--ELKS 811
             +  E  KLQ  ++  + ++       ++ +L   ++      +   I  ++ +   +++
Sbjct: 1547 LLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQT 1606

Query: 812  VMDALQKKIQS 822
            +++ L+K++  
Sbjct: 1607 MVEKLKKQVSD 1617


>gi|418228|sp|Q04764|VG20_BPMV4 RecName: Full=Minor structural protein Gp20; AltName: Full=ORF2
           protein
 gi|215248|gb|AAA56847.1| minor structural protein [Lactobacillus phage mv4]
          Length = 180

 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
              L  + + LK  +S L     ++      +E++ ++  KL+L +     QL+ + L  
Sbjct: 30  YEGLEAERDALKKTSSELSNKIEDLKANSANIEDLTKQIEKLKLDNENATKQLSAQKLDF 89

Query: 789 HKIADVNFMSHIISEVDSKELKSVM--DALQ 817
              + +          ++K +K+++  D ++
Sbjct: 90  AVTSTIKDFGAK----NAKAVKALLNHDDIR 116


>gi|188997648|ref|YP_001931899.1| efflux transporter, RND family, MFP subunit [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188932715|gb|ACD67345.1| efflux transporter, RND family, MFP subunit [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 388

 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 10/140 (7%)

Query: 722 RIEAITGQRA----RSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIH 774
           R EA+  ++A            E+ K+L       K     +  ++        ++    
Sbjct: 125 REEALAARKAALENYEFAKRTYERFKNLYQENAISKQQLEEIETKMIAAKSMVDQVDAKL 184

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + K + +       ++  +   + I +  D   LK + D          I ++G   EK
Sbjct: 185 GQLKAKESQVKAKLAQVNVMQGYTVIKAPFDGYVLKKMNDEGDMVAPGMPIFIIG---EK 241

Query: 835 KASVLIVVTEDLLDRFNAVD 854
           K   +  + E LLD+    D
Sbjct: 242 KLQFIANLDESLLDKVKEGD 261


>gi|156083114|ref|XP_001609041.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia bovis
           T2Bo]
 gi|154796291|gb|EDO05473.1| variant erythrocyte surface antigen-1, alpha subunit [Babesia
           bovis]
          Length = 1318

 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 80/253 (31%), Gaps = 31/253 (12%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              +  H     +       +  ++      +     +  V  +      E +     + 
Sbjct: 573 YANTTCHFTYPAVDIQAYNQVVHYIRALFYQLYFLRKQCAVKVTCGGKWRECRYGNGVLG 632

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             +   + +    M  +          +  +  ++V+ +  E +D      A      + 
Sbjct: 633 KDVVSWMCLGCDPMEHDRNYRVENMKKILDELVEKVKALEGEKDDEEEEGIAEKVKALLE 692

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE-KLKSLASFLKVSQGNVVGR 759
             GE++         ++ G           A+  L G+D+  ++ +   L+ ++  +V  
Sbjct: 693 KIGEVV---------VQLGN----------AQEALEGKDKGAIEGVKRELEKAKEELVEA 733

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA------DVNFMSHIISEVDSKEL---- 809
           V+++ +      L  AK KL+    +    K          N +S  I  V  K L    
Sbjct: 734 VKQVKDAVENCGLEEAKNKLEELTGNGGLDKANSGEYDPGKNKISAAIDGV-CKALEALK 792

Query: 810 KSVMDALQKKIQS 822
           K +   L++ ++ 
Sbjct: 793 KEMEKQLKEVLEK 805


>gi|149068177|gb|EDM17729.1| nucleobindin 2, isoform CRA_d [Rattus norvegicus]
          Length = 134

 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +E+LK   S + + +  +  + +E+ ++  +LQ  H   + Q      +  ++    F  
Sbjct: 58  EEELKEYESIIAIQENELKKKADELQKQKEELQRQHDHLEAQKQEYQQAVQQLEQKKFQQ 117

Query: 799 HIISEVDSKELK 810
            I     + ELK
Sbjct: 118 GIAPSGPAGELK 129


>gi|119488973|ref|ZP_01621908.1| hypothetical protein L8106_19466 [Lyngbya sp. PCC 8106]
 gi|119454929|gb|EAW36072.1| hypothetical protein L8106_19466 [Lyngbya sp. PCC 8106]
          Length = 717

 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +    L  Q+ ++  +     +       +VE + E+ +KL++  A +K +  + ++   
Sbjct: 384 KVAQALQKQEAEMAEIQRQKTIDSNRFSAQVE-VEEQEKKLKVAQALQKQEAEMAEIQRQ 442

Query: 790 KIADVNFMSHIISEVDSKELKSV 812
           KI + N ++  +   +++ L  +
Sbjct: 443 KIIESNRLTAQVEVAEAERLSQL 465


>gi|6606235|gb|AAF19130.1|AF143468_1 BdrC1 [Borrelia hermsii]
          Length = 213

 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR------KLQLNVEDLSCH 789
              + K+ ++ + LK    ++  +++ +  E +        +       L + ++++   
Sbjct: 78  NNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDIKDLDNKIDTVENNLNIKIDNVRNE 137

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             +D+  + + I  V++  L   +D ++ +++S I
Sbjct: 138 LKSDIKDLDNKIDTVENN-LNIKIDNVRNELKSDI 171


>gi|319646024|ref|ZP_08000254.1| smc protein [Bacillus sp. BT1B_CT2]
 gi|317391774|gb|EFV72571.1| smc protein [Bacillus sp. BT1B_CT2]
          Length = 1186

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL------- 781
           + AR  +   DE +  L   L ++   +  ++E   E  ++ +    + + QL       
Sbjct: 270 EEARDKIQALDESVDELQQVLLLTSEEL-EKLEGRKEVLKERKKNATQNRAQLEEAIVQR 328

Query: 782 -NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              E     KIA    +   +      E K +   +++K Q
Sbjct: 329 SEKERTLKEKIAAQKLVFEKLET----EAKELARQVKEKNQ 365


>gi|256810817|ref|YP_003128186.1| chromosome segregation protein SMC [Methanocaldococcus fervens
           AG86]
 gi|256794017|gb|ACV24686.1| chromosome segregation protein SMC [Methanocaldococcus fervens
           AG86]
          Length = 1169

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             +  ++  +K L  +        + R+ EI +E + L+   AK K +++       +I 
Sbjct: 778 ELIEKRERIMKELKEY---ESDENLKRMNEIEDELKILEKEKAKLKNEIDKGLTLVKEI- 833

Query: 793 DVNFMSHIISEVDSKE 808
               +   I E++ K 
Sbjct: 834 ----LIPKIEELNKKA 845


>gi|302916879|ref|XP_003052250.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733189|gb|EEU46537.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 670

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           R +L  +D     +    K    +++ R+  +    ++L+    K + + +         
Sbjct: 257 RDNLTDEDFIRTDVFKQFKNQNEDLIKRINTLEATNKQLREEAEKLQAERSAFRSQLE-- 314

Query: 792 ADVNFMSHIIS------EVDSKELKSVMDALQKKI 820
           AD N ++  +       + D   ++S  D L  + 
Sbjct: 315 ADANQVTQELEAEIMSRDQDLARVRSARDELLAEN 349


>gi|237740465|ref|ZP_04570946.1| DNA repair protein recN [Fusobacterium sp. 2_1_31]
 gi|229422482|gb|EEO37529.1| DNA repair protein recN [Fusobacterium sp. 2_1_31]
          Length = 558

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVE-EIWEEYRKLQLIHAKRKLQLNVEDLSCHK- 790
             L     +   LA  L  S+  +  ++E E+  E + L +  AK K+Q+N  D   +  
Sbjct: 353 KELDKIKAEYDKLAEKLSESRKEIALKIEDELLNELKFLNMEDAKLKVQMNKIDRMTNDG 412

Query: 791 IADVNFMSHIISEVDSKELKSVM 813
             ++ F        D K L  + 
Sbjct: 413 YDEIEFFISTNVGQDLKPLNKIA 435


>gi|237751987|ref|ZP_04582467.1| ATP synthase subunit B [Helicobacter winghamensis ATCC BAA-430]
 gi|229376554|gb|EEO26645.1| ATP synthase subunit B [Helicobacter winghamensis ATCC BAA-430]
          Length = 173

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 23/152 (15%)

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           R I  +       +         ++ +  K  +  +   + +I E+ ++ +    K + Q
Sbjct: 33  RTINFVIFFGLVYYFAA-----DAIKNTFKARRDEIANSLAKIQEKLQESKKAKEKAQNQ 87

Query: 781 LNVEDLSCHKI-----ADVNFMSHIISEVDSKELKSVMDALQK-------KIQSGIIMLV 828
           L       H I      +   ++  + E    E++S++            K +  I+  +
Sbjct: 88  LEEAKRIAHDIVETAHKESVIITQKVEEAAKTEIESLVRQYNDHIAFEQRKAEKLIVDEI 147

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
                 K SV       L     A  L +  A
Sbjct: 148 LSEFLNKDSVA------LSKDVLAKSLLKKVA 173


>gi|225571405|ref|ZP_03780401.1| hypothetical protein CLOHYLEM_07503 [Clostridium hylemonae DSM
           15053]
 gi|225159881|gb|EEG72500.1| hypothetical protein CLOHYLEM_07503 [Clostridium hylemonae DSM
           15053]
          Length = 225

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +++   ++   + L+ LA  L         ++ +  EE R+L+      K  +    L+ 
Sbjct: 82  EKSLRDVLEVRKALEELAVQLCC------DKITK--EEIRELEKAAEDFKTAIRNGGLTE 133

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
              ADV F   I    D+++L  +++ L++++
Sbjct: 134 IAEADVKFHDVIYMATDNQKLIQLLNNLREQM 165


>gi|217071110|gb|ACJ83915.1| unknown [Medicago truncatula]
 gi|217075096|gb|ACJ85908.1| unknown [Medicago truncatula]
          Length = 193

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVE-EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
            +  + K + +  K     +   +     E+ +K +    ++K  +        KI +  
Sbjct: 110 EERAREKRIKTAYKEKMTELKEAIRMNKVEKRKKREESEKRKKENVLKSGTKFQKITNPK 169

Query: 796 FMSHIISEVDSKELKSVMDALQKK 819
            +  I      K+L+ V D + KK
Sbjct: 170 TLKKIAKSKQRKQLRMVPDDMIKK 193


>gi|254167838|ref|ZP_04874687.1| hypothetical protein ABOONEI_1480 [Aciduliprofundum boonei T469]
 gi|197623129|gb|EDY35695.1| hypothetical protein ABOONEI_1480 [Aciduliprofundum boonei T469]
          Length = 148

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 2/138 (1%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                 H+A H+L  A+  +L +        ++    R  V + +  +  E+K IE+  N
Sbjct: 1   MDEIKTHTALHILKGAVVKVLSAK-WTASVYVSGSHGRLTVKYHRKPSQDEMKRIEELAN 59

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           + I +N+P+    + R+ A       +          V +++       +   C   H +
Sbjct: 60  EKIGENVPIKILTLPRDKAEEMFGEDIYDLFPIPD-NVKTLKIVVIDNWNVNACNKEHTN 118

Query: 701 STGEIMLLYIVSESSIRA 718
           STGE+  + I      RA
Sbjct: 119 STGEVGKIKITKWRFRRA 136


>gi|160387022|sp|Q6P6L0|FIL1L_MOUSE RecName: Full=Filamin A-interacting protein 1-like; AltName:
           Full=Protein down-regulated in ovarian cancer 1 homolog;
           Short=DOC-1
          Length = 1131

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 28/224 (12%)

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  + +    +  I ++ +    G + ++      R RV+ +E +D  +         
Sbjct: 337 ETNRSLRKAEEELQDIKDKINKGEYGNSGIMDEVDELRKRVLDMEGKDEELIKMEEQCRD 396

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--- 754
                 +  +     +  +     RI       A   L    +K K     LK +     
Sbjct: 397 LNKRLEKETVQSKDFKLEVDKLSVRIT------ALEKLEDALDKSKQECYSLKCNLEKEK 450

Query: 755 ----NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                +   +E +    ++L+ I ++ +           K+  +  M          E K
Sbjct: 451 MTTKQLSEELESLNARIKELEAIESRLEKTEITLKDDLTKLKTLTVMLV-------DERK 503

Query: 811 SVMDALQ---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           ++ + L+    K+QS    L   +++ K +    VTE L++   
Sbjct: 504 TMSEKLKQTEDKLQSTTSQL--QAEQNKVT---TVTEKLIEETK 542


>gi|121601735|ref|YP_989185.1| single-stranded-DNA-specific exonuclease RecJ [Bartonella
           bacilliformis KC583]
 gi|120613912|gb|ABM44513.1| single-stranded-DNA-specific exonuclease RecJ [Bartonella
           bacilliformis KC583]
          Length = 594

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 54/156 (34%), Gaps = 14/156 (8%)

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNF-MSHIISE 803
           A  L     +   R+ +  ++  + +      +L      + S ++  ++   +     E
Sbjct: 319 ARLLSCDNRDEADRIAKQLDQLNQERQEMESVQLAQAEAYIHSIYQDEEMPLSIVVAHQE 378

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
                +  +   L+++    +   + +  + K  +    +   +D  +  +L R +  + 
Sbjct: 379 WHPGIVGILASRLKERFFCPVFA-IALKADGK-GIGSGRS---IDGIDLGELVREAVSLN 433

Query: 864 GGGGGGGRPHMAQSGGP-NGNKADQAIAGVASFLKK 898
               GGG   MA +G      K +        +LK+
Sbjct: 434 LLEKGGG-HSMA-AGLTIQSTKINAF----QEWLKE 463


>gi|295424207|ref|NP_001035487.2| filamin A-interacting protein 1-like isoform 1 [Mus musculus]
          Length = 1131

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 28/224 (12%)

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  + +    +  I ++ +    G + ++      R RV+ +E +D  +         
Sbjct: 337 ETNRSLRKAEEELQDIKDKINKGEYGNSGIMDEVDELRKRVLDMEGKDEELIKMEEQCRD 396

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--- 754
                 +  +     +  +     RI       A   L    +K K     LK +     
Sbjct: 397 LNKRLEKETVQSKDFKLEVDKLSVRIT------ALEKLEDALDKSKQECYSLKCNLEKEK 450

Query: 755 ----NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                +   +E +    ++L+ I ++ +           K+  +  M          E K
Sbjct: 451 MTTKQLSEELESLNARIKELEAIESRLEKTEITLKDDLTKLKTLTVMLV-------DERK 503

Query: 811 SVMDALQ---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           ++ + L+    K+QS    L   +++ K +    VTE L++   
Sbjct: 504 TMSEKLKQTEDKLQSTTSQL--QAEQNKVT---TVTEKLIEETK 542


>gi|253701837|ref|YP_003023026.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
 gi|251776687|gb|ACT19268.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
          Length = 441

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 71/183 (38%), Gaps = 18/183 (9%)

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           ++  L   +  +   +   SG    L T+ +  +  V +   DG      L     +  T
Sbjct: 28  VSSLLQEYSYTIYVAEDGESGIRRALLTRPDLILLDVLMPGIDGFETCQRLKA---MEGT 84

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK--------LKSLASFLKVSQG 754
            +I ++++ + + +   +R  EA         L  ++          ++ L+  L+ +  
Sbjct: 85  RDIPVIFMTALAEMEQKVRGFEAGAVDYIVKPLQREEVLARVGVHIHIRHLSKELQETNA 144

Query: 755 NVVGRVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH--IISEVDSKE 808
           ++  RVE     +    ++LQ   A+RKL      +   ++  +N      ++ EV+ K 
Sbjct: 145 SLEKRVEDRTASLASANQELQKEIAERKLAEEALAVKQAQLEALNLSLEQRVVEEVE-KN 203

Query: 809 LKS 811
           L+ 
Sbjct: 204 LQK 206


>gi|189344715|gb|ACD92726.1| downregulated in ovarian cancer 1-like protein [Mus musculus]
          Length = 1131

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 28/224 (12%)

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  + +    +  I ++ +    G + ++      R RV+ +E +D  +         
Sbjct: 337 ETNRSLRKAEEELQDIKDKINKGEYGNSGIMDEVDELRKRVLDMEGKDEELIKMEEQCRD 396

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--- 754
                 +  +     +  +     RI       A   L    +K K     LK +     
Sbjct: 397 LNKRLEKETVQSKDFKLEVDKLSVRIT------ALEKLEDALDKSKQECYSLKCNLEKEK 450

Query: 755 ----NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                +   +E +    ++L+ I ++ +           K+  +  M          E K
Sbjct: 451 MTTKQLSEELESLNARIKELEAIESRLEKTEITLKDDLTKLKTLTVMLV-------DERK 503

Query: 811 SVMDALQ---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           ++ + L+    K+QS    L   +++ K +    VTE L++   
Sbjct: 504 TMSEKLKQTEDKLQSTTSQL--QAEQNKVT---TVTEKLIEETK 542


>gi|167396138|ref|XP_001741920.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165893331|gb|EDR21625.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 1143

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 736 MGQDEKLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             + E+L  +   LK +     +   +EE+ +E ++L++   + K +LN  + +      
Sbjct: 450 KKEVEELSKVVIALKGNNDINTIKKSIEELSDEVKELKIKENEIKEKLNTFNENKETSNS 509

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            N +  I  E+D   +K +++  ++ +   +
Sbjct: 510 QNQIEEIRQEID--YIKKLVNENKQSVTEKV 538


>gi|123455656|ref|XP_001315570.1| small heat shock protein [Trichomonas vaginalis G3]
 gi|121898251|gb|EAY03347.1| small heat shock protein, putative [Trichomonas vaginalis G3]
          Length = 889

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           +D  LK + +       +V  R+EEI +E +K Q+ H + + Q  +             +
Sbjct: 225 EDADLKEILAQYSKDIESVNERLEEITDEKQKKQVEHERDEKQQILS-----------IV 273

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              ++   +K +  V+D+++ +    +I +       K
Sbjct: 274 EKALTADQAKTVGKVIDSIKDRQLGKVIGITAARGRGK 311


>gi|42565945|ref|NP_567014.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana]
          Length = 777

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 732 RSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLS 787
           RS L+  +E   +L   +K  ++  +  +VE++ +E  ++Q + + ++ Q   +    + 
Sbjct: 620 RSALLRAEELEIALMEIVKEDNRRQLSAKVEQLEQEMAEVQRLLSDKQEQEGAMLQVLMR 679

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   V   + I +E D++  +     LQ+K +  +  L 
Sbjct: 680 VEQEQKVTEDARIFAEQDAEAQRYAAQVLQEKYEEAVAALA 720


>gi|18313233|ref|NP_559900.1| hypothetical protein PAE2280 [Pyrobaculum aerophilum str. IM2]
 gi|18160751|gb|AAL64082.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 794

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
                GG+ +    E+       E ++      +EA++G+ A  +L  +          L
Sbjct: 446 EIETRGGSLIRELEEMRERVREVEKAVEE----MEALSGEVA-EYLAVKTRV-----EEL 495

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           K+ +  VV +  +  +  R+L+    + +  L   D
Sbjct: 496 KIEREEVVKKAVQAEKSLRQLEKKLERLRTLLAKVD 531


>gi|46108732|ref|XP_381424.1| hypothetical protein FG01248.1 [Gibberella zeae PH-1]
          Length = 745

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 64/199 (32%), Gaps = 11/199 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 L     +          +    HS+ H+L  A     G ++        P G  
Sbjct: 125 WDLTRPLEKSCKVEFLDFDHTEGKKVFWHSSAHILGEAAERRFGCYLCNGPPTEDPPGFY 184

Query: 619 FDVTHSKP--ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-NDR 675
           +D+ +     +T  + K++E   N I+ Q  P     M +E+ +     +     +   R
Sbjct: 185 YDMANMGEQSVTEEDKKALEQLSNSIVKQKQPFERLEMTKEELLEMFEYSEYKKYFIQQR 244

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAITG 728
           V   +            LC G HV +TG I    ++  S       S    ++RI  ++ 
Sbjct: 245 VPDGTKSTVYRCGPLIDLCRGPHVPTTGNIKAFSVLKNSAAYWLGDSKNESVQRIAGVSF 304

Query: 729 QRARSHLMGQDEKLKSLAS 747
              +  L      L   A 
Sbjct: 305 PD-KKALEEYKHFLAEAAK 322


>gi|307128567|ref|YP_003880597.1| 50S ribosomal protein L7/L12 [Candidatus Sulcia muelleri CARI]
 gi|306483029|gb|ADM89899.1| 50S ribosomal protein L7/L12 [Candidatus Sulcia muelleri CARI]
          Length = 124

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRV--EEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           A   +    +++  L++ LK   G V  ++  EE     + L+    K    + ++    
Sbjct: 8   ANKLVNLTVKEVNELSNLLKKDYGLVSNKISSEEQITNNKNLETKVEKTTFNVILKSSGP 67

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            K+A V  +   I+    KE K ++D++ K I+  +
Sbjct: 68  SKLAVVKLIKE-ITGKGLKESKELVDSVPKTIKESL 102


>gi|289549312|ref|YP_003474300.1| peptide chain release factor 1 [Thermocrinis albus DSM 14484]
 gi|289182929|gb|ADC90173.1| peptide chain release factor 1 [Thermocrinis albus DSM 14484]
          Length = 359

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            R         ++L+     LK  +   + +     EE ++L+      + ++ +  L  
Sbjct: 50  HRLHQEYRKILKELEETKELLKNPELEPLAK-----EEIKRLEKELESTEKRIKIHLLPK 104

Query: 789 HKIADVNFMSHIISEVDSKE 808
            +    N +  I + V  +E
Sbjct: 105 DERDSKNVILEIRAGVGGEE 124


>gi|301756707|ref|XP_002914192.1| PREDICTED: hypothetical protein LOC100467721 [Ailuropoda
           melanoleuca]
 gi|281347240|gb|EFB22824.1| hypothetical protein PANDA_002066 [Ailuropoda melanoleuca]
          Length = 591

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 736 MGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKIAD 793
             + + L ++   L+++    +  +++++ ++   L+L +   K+QL  V  L    I  
Sbjct: 413 ENEQQTLLNIQQNLQITTTQRLEEKIQKLQKQLSDLKLSNESMKIQLTKVNVLKDKTIKK 472

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +      +  +  K +    D L+  + S 
Sbjct: 473 LRQSLTQVEAMRGKAVMKT-DNLKTTLDSA 501


>gi|255528658|ref|ZP_05395412.1| phage shock protein A, PspA [Clostridium carboxidivorans P7]
 gi|296188346|ref|ZP_06856738.1| PspA/IM30 family protein [Clostridium carboxidivorans P7]
 gi|255507651|gb|EET84137.1| phage shock protein A, PspA [Clostridium carboxidivorans P7]
 gi|296047472|gb|EFG86914.1| PspA/IM30 family protein [Clostridium carboxidivorans P7]
          Length = 216

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 34/75 (45%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
           + LK S  +   + E +  + R+L+    K +   +      +       ++ I+S VD+
Sbjct: 102 NSLKTSYEDASKKAETLKAKLRELENEIEKTRAYRDEASARFNNAEASKKVNEILSNVDA 161

Query: 807 KELKSVMDALQKKIQ 821
              K  +D +++K+Q
Sbjct: 162 GSNKINLDDIERKVQ 176


>gi|254167406|ref|ZP_04874258.1| hypothetical protein ABOONEI_2219 [Aciduliprofundum boonei T469]
 gi|197623669|gb|EDY36232.1| hypothetical protein ABOONEI_2219 [Aciduliprofundum boonei T469]
          Length = 593

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 732 RSHLMGQDEKLKS-LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
              L  + E LK  L   L      +  +  E+ EE  +L+    ++ L+L  ++++   
Sbjct: 136 IETLRKEIETLKEELTKPLPEDIRELKKKEIELREELIRLESEKRRKLLELESQNMANLS 195

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             ++  +   I + + K L   +  L K+++
Sbjct: 196 DKELEELKEAIKDGNVKALTEKITELTKELE 226


>gi|154419451|ref|XP_001582742.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121916979|gb|EAY21756.1| hypothetical protein TVAG_237820 [Trichomonas vaginalis G3]
          Length = 651

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 56/143 (39%), Gaps = 19/143 (13%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV------SQGNV 756
           G+   +   +ES+      R+E +           Q +++  L   LK       +  ++
Sbjct: 133 GQEAEISDYNESASSMNSERMEYL------EKFEKQQKEISELKVQLKEIPKLHENIEDL 186

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
               +E+ +   +LQ    + + Q++ ++   ++I +   +      V  K L    ++ 
Sbjct: 187 QNTNKELAQNNTELQDQVYELQKQIDTQNNESNEIKET--IEEQTERV--KTLMEKFNSA 242

Query: 817 QKKIQ---SGIIMLVGISKEKKA 836
           + ++      +I+L   + + KA
Sbjct: 243 KTELNAASKKLIILTNENTDLKA 265


>gi|118379374|ref|XP_001022853.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila]
 gi|89304620|gb|EAS02608.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila SB210]
          Length = 2645

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 38/88 (43%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
            L  Q E L      LK         + +   +  +LQ    + + +L +  +      + 
Sbjct: 1976 LQYQVENLTRENEALKQRLAQTAETLSQQVAQNSELQRRVQQLESELQLLKMQLEGERED 2035

Query: 795  NFMSHIISEVDSKELKSVMDALQKKIQS 822
            N +    ++ ++++L+ V+  LQ++I++
Sbjct: 2036 NKVKRSRNDKNNEDLQKVIQQLQQEIEN 2063


>gi|46309834|gb|AAS87211.1| ninein [Mus musculus]
          Length = 2113

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
              E+ L     +   R    R+ A+  Q+       ++E+LK++   L+++ G +  +VE
Sbjct: 1441 IAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVE 1500

Query: 762  EIWEEYRKLQLIHAKRKLQL-------NVEDLSCHKIADVN-FMSHIISEVDSK--ELKS 811
             +  E  KLQ  ++  + ++       ++ +L   ++      +   I  ++ +   +++
Sbjct: 1501 LLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQT 1560

Query: 812  VMDALQKKIQS 822
            +++ L+K++  
Sbjct: 1561 MVEKLKKQVSD 1571


>gi|28376416|gb|AAM97262.1| major surface protein 3 [Anaplasma marginale str. Florida]
          Length = 458

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           H +  DE    L S L + +   +     V++  E  ++L+    + +           K
Sbjct: 67  HHLNADEIEGELKSALGLERLEKLAELELVKQRLESMKELEKKIEEAQXAAEELRXMREK 126

Query: 791 I-------ADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKEKKASVLIV- 841
           +        D   +   I E ++ ELK  +  + K +      ++  + K  K +++ + 
Sbjct: 127 LMELAGRGEDPAGLMKAIEEANADELKKGLKEVLKTLEGKKSELVREVGKLNKVALVEMK 186

Query: 842 VTEDLLDRFNAVDLARLSAKVL 863
             + L++     +L +L AK +
Sbjct: 187 AGKGLVEEVK-GELGKLEAKKI 207


>gi|52080197|ref|YP_078988.1| chromosome segregation SMC protein-like protein [Bacillus
           licheniformis ATCC 14580]
 gi|52785574|ref|YP_091403.1| hypothetical protein BLi01815 [Bacillus licheniformis ATCC 14580]
 gi|52003408|gb|AAU23350.1| chromosome segregation SMC protein homolg [Bacillus licheniformis
           ATCC 14580]
 gi|52348076|gb|AAU40710.1| Smc [Bacillus licheniformis ATCC 14580]
          Length = 1186

 Score = 37.8 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL------- 781
           + AR  +   DE +  L   L ++   +  ++E   E  ++ +    + + QL       
Sbjct: 270 EEARDKIQALDESVDELQQVLLLTSEEL-EKLEGRKEVLKERKKNATQNRAQLEEAIVQR 328

Query: 782 -NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              E     KIA    +   +      E K +   +++K Q
Sbjct: 329 SEKERTLKEKIAAQKLVFEKLET----EAKELARQVKEKNQ 365


>gi|303235425|ref|ZP_07322040.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302484373|gb|EFL47353.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
          Length = 138

 Score = 37.8 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           ++R+  + G  A + + G  + +  +   LK  Q     +V ++  +  KLQL   K K 
Sbjct: 1   MKRL-FLIGIMALAAVSGFAQDVNRV-DKLKEQQ-----KVLKLTSKLNKLQLDLEKEKA 53

Query: 780 QLNVEDLSCHKIA-DVNFMSHIISEVDS----KELKSVMDALQK 818
             N       ++  + N ++   +  D+    K+ K  +  L++
Sbjct: 54  TYNNLISKASEVNAEANVVTTEFNSSDAKSTVKDAKETIKVLKE 97


>gi|154687293|ref|YP_001422454.1| YueB [Bacillus amyloliquefaciens FZB42]
 gi|154353144|gb|ABS75223.1| YueB [Bacillus amyloliquefaciens FZB42]
          Length = 1041

 Score = 37.8 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-----RKLQL 781
             +R         +  K L    +     +  R++ + EE + L+   AK      KLQ 
Sbjct: 518 AKERLNQAAERIQQIEKELEEKQQTHNEELKKRLDALDEEIQGLKKQIAKVEERAEKLQE 577

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKEL 809
           ++E     +  D N +  +I   +   L
Sbjct: 578 DLEKTVEKREQDFNTVYRMIVRTEQNIL 605


>gi|125346101|ref|NP_001074922.1| ninein isoform 1 [Mus musculus]
          Length = 2113

 Score = 37.8 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
              E+ L     +   R    R+ A+  Q+       ++E+LK++   L+++ G +  +VE
Sbjct: 1441 IAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVE 1500

Query: 762  EIWEEYRKLQLIHAKRKLQL-------NVEDLSCHKIADVN-FMSHIISEVDSK--ELKS 811
             +  E  KLQ  ++  + ++       ++ +L   ++      +   I  ++ +   +++
Sbjct: 1501 LLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQT 1560

Query: 812  VMDALQKKIQS 822
            +++ L+K++  
Sbjct: 1561 MVEKLKKQVSD 1571


>gi|94969719|ref|YP_591767.1| chromosome segregation ATPases-like [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551769|gb|ABF41693.1| Chromosome segregation ATPases-like protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1018

 Score = 37.8 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           T    R+ +   ++ L      LK     +   +E   EE ++LQ    ++K +L   D 
Sbjct: 135 TENELRARVGELEKTLHEETERLKKESQELAQLLELSQEEVKQLQKREEEQKNRLVDLDK 194

Query: 787 SCHKIAD 793
               +  
Sbjct: 195 QIDDLRG 201


>gi|86171624|ref|XP_966248.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|46361217|emb|CAG25078.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 947

 Score = 37.8 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKIADVN 795
            ++  L+ +   L+ +   +  R+E+   E   L+  +    L++ N+E        + N
Sbjct: 251 EKENYLEDV-ESLRTNIEELDIRIEKKNNEIESLKRENEHILLKVDNLEKNKKEMKNEYN 309

Query: 796 FMSHIISEVDSKELK--SVMDALQKKIQS 822
            +   +  +  + +K  + +D L+  +  
Sbjct: 310 DIYESLQNMKKENMKKNNTIDKLKNDLDE 338


>gi|301606658|ref|XP_002932939.1| PREDICTED: myosin-7B-like [Xenopus (Silurana) tropicalis]
          Length = 1896

 Score = 37.8 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              Q+A   L  +++K+ +L    K      V  +E   E+ +KL++   + K +L     
Sbjct: 960  AHQQALDDLQAEEDKVNTLTKA-KAKLEQQVDDLEGSLEQEKKLRMDLERAKRKLE---- 1014

Query: 787  SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                  D+      + ++D+ + + + + L+KK
Sbjct: 1015 -----GDLKLTQESVMDLDNDK-QQLEEKLKKK 1041


>gi|118346695|ref|XP_977273.1| hypothetical protein TTHERM_00042690 [Tetrahymena thermophila]
 gi|89288593|gb|EAR86581.1| hypothetical protein TTHERM_00042690 [Tetrahymena thermophila
           SB210]
          Length = 614

 Score = 37.8 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-DLSCHK 790
              L    E+ K     LK     +  +V ++  + ++L++        L +  DL   +
Sbjct: 33  YETLKQIHEEFKIQQDRLKRENDELSVKVIQLMNDKKELEMQFDATIRNLKIAIDLKQRE 92

Query: 791 IADVNFMSHIISEVDSKELK-SVMDAL 816
           I +V   + II   D   L+  +++ L
Sbjct: 93  IEEVQ--AKIIPSFDQDMLRIKIINEL 117


>gi|15606638|ref|NP_214018.1| hypothetical protein aq_1476 [Aquifex aeolicus VF5]
 gi|14916865|sp|O67453|Y1476_AQUAE RecName: Full=Uncharacterized protein aq_1476
 gi|2983868|gb|AAC07421.1| putative protein [Aquifex aeolicus VF5]
          Length = 180

 Score = 37.8 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           L  + E L+     L   +  +  ++ ++ +EYR L         +LN +     +
Sbjct: 121 LRRKYEALREEEEKLHQKEDEIEEKIHKLKKEYRALLNELKGLIEELNRKAREIIE 176


>gi|71403802|ref|XP_804664.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70867754|gb|EAN82813.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 846

 Score = 37.8 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +E    +RA+       +++  L + LK  +            + R L+  H K  +Q+ 
Sbjct: 101 LEFAADERAKEKAAEIQKEVNRLETALKTVKEEREELKISTEHQLRLLKSQHEKELIQVQ 160

Query: 783 VEDLSCHK--IADVNFMSHIISEVDSKELKSV----------MDALQKKIQSG 823
            E    +   +         + +V     + +          ++ L+ ++Q+ 
Sbjct: 161 TEKRLLNDRCVELTRIYQQQVDDVKKAAARELEYVESLCNTRVEQLKSELQAA 213


>gi|301621922|ref|XP_002940296.1| PREDICTED: Golgin subfamily A member 4-like, partial [Xenopus
            (Silurana) tropicalis]
          Length = 2050

 Score = 37.8 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 55/532 (10%), Positives = 149/532 (28%), Gaps = 47/532 (8%)

Query: 329  LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD------RGLVLLDGVLSHLGKDEIL 382
               E+GS   E       +E+ L+          D            +  L    +    
Sbjct: 672  HSEEIGSIEREKEMHTQGVEKDLKENINNLKLLQDSKECELEEFRKENQKLKEAAEKAEA 731

Query: 383  NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
            +   AF L +      + +      +                 + R     +   + T  
Sbjct: 732  DHKEAFALLEAARHSHE-INTHEKEQAYELKLKELQEMLKGMTQERNDLKEVTEKAETQL 790

Query: 443  KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
            K      +   A        ++       +  +        L     + VK + +Q E +
Sbjct: 791  KNMQIELDSNKA-------QVQSLTKQIHEESMNMADKLNTLVLESETQVKGLKEQIEEI 843

Query: 503  EEAV----------SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                              ++++ D     +E    +           +     ++K  + 
Sbjct: 844  SRIASEREHELKKVKEDHIQIILDLNNTISEKEKNILSLQEDYKVKHKNLDAKMEKLKQK 903

Query: 553  IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS--TILGSHVSQNGS 610
                    ++     E  L   I+ +    ++        +H      +   +H      
Sbjct: 904  FKELQESSKKKYSELESKLKKEIEKKQNELINKEREFNEKIHEMAQASSTGINHAMAQLE 963

Query: 611  CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG- 669
                + ++    + +       ++ E  ++ +           +  +D + + +      
Sbjct: 964  LNHKEQIQNMTDNHQRELQETTEACEKKLSQLAEDLREKHEEELQEKDQVIAESRKQFNI 1023

Query: 670  ---TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                K +    +  +      + ++       +  +   +L    SE+  +    R+   
Sbjct: 1024 KNKEKEDADKEISDLRELKTQMDATFNDLQEQLCQSAAQVLHLTQSENEFKTNCTRLT-- 1081

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL--QLNVE 784
                 +  L  Q ++LK LA   K     +V +V    E+Y+ L+ +H K +      ++
Sbjct: 1082 ---TEKQILQQQLDELKILAEEDKSKNDEIVNKVRLAEEKYQDLETLHNKVRADFAKELQ 1138

Query: 785  DLSCHKIADVNFMSHIISE------VDSKELKS-VMDALQKKIQ---SGIIM 826
            D    K  +   +             ++++L   + + L +  +   +G+I+
Sbjct: 1139 DKLVEKENEFKHLLVKQENQLILCCKNAEDLFETLANGLTENHKYKLNGLIV 1190


>gi|297826521|ref|XP_002881143.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297326982|gb|EFH57402.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 123

 Score = 37.8 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 27/58 (46%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
              S  +    +++  A  LK    ++  +++E+ +E +KL++   + + QL     S
Sbjct: 57  AIISDAIRMVNQVRDEAQKLKDLNSSLQEKIKELKDEKQKLKVEKERIEQQLKAIKTS 114


>gi|291541784|emb|CBL14894.1| hypothetical protein RBR_05000 [Ruminococcus bromii L2-63]
          Length = 848

 Score = 37.8 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 16/113 (14%)

Query: 732 RSHLMGQDEKLKSLASF---LKVSQGN-------VVGRVEEIWEEYRKLQLIHAKRKLQL 781
              +  +++K+  L +    LKV           + GRV  + ++ ++++    + KL+L
Sbjct: 353 LREIREREKKILDLTNEIKNLKVIIDQKEQQILTLRGRVSALEDQLQEVKKELQQTKLKL 412

Query: 782 NVEDLSCHKIADVN-FMSHIISEVD--SKELKSVMDALQKK---IQSGIIMLV 828
              +    ++ + N  +   I E++    EL   +D L KK   +   I++LV
Sbjct: 413 MEAEKRIAELEEENQQLKDTIEELNKTIDELNQTIDTLNKKIVELNDRILVLV 465


>gi|262281866|ref|ZP_06059635.1| DNA polymerase III subunit epsilon [Streptococcus sp. 2_1_36FAA]
 gi|262262320|gb|EEY81017.1| DNA polymerase III subunit epsilon [Streptococcus sp. 2_1_36FAA]
          Length = 164

 Score = 37.8 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 14/96 (14%)

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEE-------------YRKLQLIHAKRKLQLNVED 785
           ++ +  LA  L VS+  +  RV+ + EE                L  +    K  +  ++
Sbjct: 4   EKTVSELAEILGVSRQAINNRVKALPEEDTTKNEKGVTVVTRSGLIKLEEIYKKTIFEDE 63

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
                +     M  ++ E +++ L+ + D L+ K +
Sbjct: 64  PVSEDVKQRELMEILVDEKNAEILR-LYDQLKSKDE 98


>gi|154419626|ref|XP_001582829.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121917067|gb|EAY21843.1| hypothetical protein TVAG_249030 [Trichomonas vaginalis G3]
          Length = 384

 Score = 37.8 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 4/131 (3%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IE  + +R          ++K     LK     +    ++   E RK+ +  ++     N
Sbjct: 220 IEPTSNERILDLEQRLTNEIKE-NELLKAENNQLSEANKKYKAELRKMSIEQSQLNAANN 278

Query: 783 VEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV-LI 840
            E +    +I D+        +   K LK  ++ L + I++    L+ +S E +  + +I
Sbjct: 279 NEIMEFTEQIFDLKQRLERKQQK-KKILKFKINQLSEDIKNSKAELIKVSNENRELIKII 337

Query: 841 VVTEDLLDRFN 851
             + +   + N
Sbjct: 338 SASNNEFKKSN 348


>gi|327401278|ref|YP_004342117.1| chromosome segregation protein SMC [Archaeoglobus veneficus SNP6]
 gi|327316786|gb|AEA47402.1| chromosome segregation protein SMC [Archaeoglobus veneficus SNP6]
          Length = 1170

 Score = 37.8 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 34/126 (26%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +RA        +++    S LK    +   R+EE+  E  KL+    +            
Sbjct: 841 KRAIDEKNAAIQRIDEEVSSLKAKIEDGRNRIEELKRELEKLRSEEERV----------- 889

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
                           + +EL+   D L ++I+S         +++KA+    +T    +
Sbjct: 890 --------------GREVRELRKKRDELLERIKSL--------EKEKAACEFGIT-AADE 926

Query: 849 RFNAVD 854
           +  A  
Sbjct: 927 KIKARK 932


>gi|254167926|ref|ZP_04874775.1| hypothetical protein ABOONEI_1568 [Aciduliprofundum boonei T469]
 gi|289596616|ref|YP_003483312.1| partial alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623217|gb|EDY35783.1| hypothetical protein ABOONEI_1568 [Aciduliprofundum boonei T469]
 gi|289534403|gb|ADD08750.1| partial alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 148

 Score = 37.8 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 2/138 (1%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                 H+A H+L  A+  +LG+        ++ +  R  V + +  +  E+K IE+  N
Sbjct: 1   MDEIKTHTALHILKGAVVKVLGAK-WTASVYVSGNHGRLTVKYHRKPSQDEMKRIEELAN 59

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           + I +N+P+    + R+ A       +          V +++       +   C   H +
Sbjct: 60  EKIGENVPIKILTLPRDKAEEMFGEDIYDLFPIPD-NVKTLKIVVIDNWNVNACNKEHTN 118

Query: 701 STGEIMLLYIVSESSIRA 718
           STGE+  + I      RA
Sbjct: 119 STGEVGKIKITKWRFRRA 136


>gi|308512455|ref|XP_003118410.1| CRE-LFI-1 protein [Caenorhabditis remanei]
 gi|308239056|gb|EFO83008.1| CRE-LFI-1 protein [Caenorhabditis remanei]
          Length = 2356

 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 18/52 (34%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
             AR      DE   S+    K     +  R+E +  E  +L+      K +
Sbjct: 639 DDARKLRDEMDEHANSIQEEFKTRIDELNRRIENLLRENNRLKSEVNPLKDK 690


>gi|297695717|ref|XP_002825076.1| PREDICTED: LOW QUALITY PROTEIN: thyroid receptor-interacting protein
            11-like [Pongo abelii]
          Length = 1979

 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 23/115 (20%)

Query: 731  ARSHLMGQDEKL--------KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
               H   +++ +        K L +  K    N+ G+V  + E   +             
Sbjct: 1679 VLEHFQQEEKAMYSAELEKQKQLIAEWKKKAENLEGKVISLQERLDEANAALDSASRLTE 1738

Query: 783  VEDLSCHKIADVNFMSHIISEVDSKELK-SVMDALQKKIQSGIIMLVGISKEKKA 836
              D+   +I ++             EL+  ++D +QKK+ +     +  S E K 
Sbjct: 1739 QLDVKEEQIEELK---------KQNELRQEMLDDVQKKLMN-----LANSSEGKV 1779


>gi|251811054|ref|ZP_04825527.1| cell shape protein MreC [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875926|ref|ZP_06284793.1| rod shape-determining protein MreC [Staphylococcus epidermidis
           SK135]
 gi|293366394|ref|ZP_06613073.1| rod shape-determining protein MreC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805430|gb|EES58087.1| cell shape protein MreC [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294951|gb|EFA87478.1| rod shape-determining protein MreC [Staphylococcus epidermidis
           SK135]
 gi|291319519|gb|EFE59886.1| rod shape-determining protein MreC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329724711|gb|EGG61217.1| rod shape-determining protein MreC [Staphylococcus epidermidis
           VCU144]
 gi|329733791|gb|EGG70117.1| rod shape-determining protein MreC [Staphylococcus epidermidis
           VCU045]
 gi|329737158|gb|EGG73412.1| rod shape-determining protein MreC [Staphylococcus epidermidis
           VCU028]
          Length = 279

 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K S      +++++  +  +L+  + K K +L+++DLS ++    + ++    +     +
Sbjct: 68  KGSSKKDKNKIKQLEAKNEELESENKKYKKELDIKDLSKYEPISTSVIARNPDQW-MNTI 126

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
             ++D              G     K ++ ++ TE L+ R 
Sbjct: 127 --LIDK-------------GSKAGIKNNMAVMTTEGLVGRV 152


>gi|254166619|ref|ZP_04873473.1| hypothetical protein ABOONEI_1711 [Aciduliprofundum boonei T469]
 gi|289596331|ref|YP_003483027.1| RecA-superfamily ATPase implicated in signal transduction-like
           protein [Aciduliprofundum boonei T469]
 gi|197624229|gb|EDY36790.1| hypothetical protein ABOONEI_1711 [Aciduliprofundum boonei T469]
 gi|289534118|gb|ADD08465.1| RecA-superfamily ATPase implicated in signal transduction-like
           protein [Aciduliprofundum boonei T469]
          Length = 593

 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 732 RSHLMGQDEKLKS-LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
              L  + E LK  L   L      +  +  E+ EE  +L+    ++ L+L  ++++   
Sbjct: 136 IETLRKEIETLKEELTKPLPEDIRELKKKEIELREELIRLESEKRRKLLELESQNMANLS 195

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             ++  +   I + + K L   +  L K+++
Sbjct: 196 DKELEELKEAIKDGNVKALTEKITELTKELE 226


>gi|125346156|ref|NP_032723.2| ninein isoform 2 [Mus musculus]
          Length = 2035

 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
              E+ L     +   R    R+ A+  Q+       ++E+LK++   L+++ G +  +VE
Sbjct: 1441 IAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVE 1500

Query: 762  EIWEEYRKLQLIHAKRKLQL-------NVEDLSCHKIADVN-FMSHIISEVDSK--ELKS 811
             +  E  KLQ  ++  + ++       ++ +L   ++      +   I  ++ +   +++
Sbjct: 1501 LLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQT 1560

Query: 812  VMDALQKKIQS 822
            +++ L+K++  
Sbjct: 1561 MVEKLKKQVSD 1571


>gi|229088039|ref|ZP_04220095.1| hypothetical protein bcere0022_45500 [Bacillus cereus Rock3-44]
 gi|228695268|gb|EEL48197.1| hypothetical protein bcere0022_45500 [Bacillus cereus Rock3-44]
          Length = 437

 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKV----SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE--- 784
            + +  Q +K++ L +  K         +  +V  + EE + LQ    +++ QL      
Sbjct: 217 INDITAQYKKIEELEARKKDFHDDQSAEISEKVNSLLEENQSLQKKLEEKETQLQANQEQ 276

Query: 785 -DLSCHKIADVNFMSHIISE 803
            D +  +I +    ++   E
Sbjct: 277 IDKNEKEIDNNKVKTYNTDE 296


>gi|223985963|ref|ZP_03635997.1| hypothetical protein HOLDEFILI_03303 [Holdemania filiformis DSM
           12042]
 gi|223962069|gb|EEF66547.1| hypothetical protein HOLDEFILI_03303 [Holdemania filiformis DSM
           12042]
          Length = 514

 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 18/126 (14%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRV-- 760
           E   + ++ E +   G RR  A      +  L   ++++  L++  K    + V GR+  
Sbjct: 363 EARFMKLLIEQNEDGGKRRNAAK-----KKELEAAEKRIGELSAIFKRLYEDSVTGRISD 417

Query: 761 EEIWE-------EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELK 810
           E   E       E ++L+   A  + +L+    +         +        E+    L+
Sbjct: 418 ERFTELSADYEAEQKELKERAAALQAELSKAQEATVNAGKFMNIVRKNMNFEELTPTLLR 477

Query: 811 SVMDAL 816
             ++ +
Sbjct: 478 EFVEKI 483


>gi|241954468|ref|XP_002419955.1| conserved hypothetical protein [Candida dubliniensis CD36]
 gi|223643296|emb|CAX42170.1| conserved hypothetical protein [Candida dubliniensis CD36]
          Length = 799

 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITG--QRARSHLMGQDEKLKSLASFLKVS-QGNVVG 758
            G I  L   +E   +   R  + +T    +     +  DE L  L+ +L        + 
Sbjct: 683 VGHIKPLKKENEELKQDQQRLTQEVTSLKDKLEKSKIQADEDLDKLSKYLYAEYAAKHIK 742

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
           ++E I +E +KL+      K++L   +     +++ N 
Sbjct: 743 KLEGIIKENKKLERELEFYKMKLEKANKDAELLSERNV 780


>gi|187952713|gb|AAI37790.1| Nin protein [Mus musculus]
          Length = 2035

 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
              E+ L     +   R    R+ A+  Q+       ++E+LK++   L+++ G +  +VE
Sbjct: 1441 IAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVE 1500

Query: 762  EIWEEYRKLQLIHAKRKLQL-------NVEDLSCHKIADVN-FMSHIISEVDSK--ELKS 811
             +  E  KLQ  ++  + ++       ++ +L   ++      +   I  ++ +   +++
Sbjct: 1501 LLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQT 1560

Query: 812  VMDALQKKIQS 822
            +++ L+K++  
Sbjct: 1561 MVEKLKKQVSD 1571


>gi|123477447|ref|XP_001321891.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121904726|gb|EAY09668.1| hypothetical protein TVAG_060440 [Trichomonas vaginalis G3]
          Length = 1035

 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 25/64 (39%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              L   +++L      LK    ++     ++ ++ ++++    K K    + +     +
Sbjct: 705 IDQLKSDNQQLSLNFDHLKDDYEDLKTENNKLQDQNKQMKKEIEKMKETNQLLNDKVEDL 764

Query: 792 ADVN 795
            ++N
Sbjct: 765 EEIN 768


>gi|27468250|ref|NP_764887.1| cell shape determinant mreC [Staphylococcus epidermidis ATCC 12228]
 gi|27315796|gb|AAO04931.1|AE016748_165 cell shape determinant mreC [Staphylococcus epidermidis ATCC 12228]
          Length = 282

 Score = 37.8 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K S      +++++  +  +L+  + K K +L+++DLS ++    + ++    +     +
Sbjct: 71  KGSSKKDKNKIKQLEAKNEELESENKKYKKELDIKDLSKYEPISTSVIARNPDQW-MNTI 129

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
             ++D              G     K ++ ++ TE L+ R 
Sbjct: 130 --LIDK-------------GSKAGIKNNMAVMTTEGLVGRV 155


>gi|301787415|ref|XP_002929128.1| PREDICTED: b-cell receptor-associated protein 31-like [Ailuropoda
           melanoleuca]
          Length = 291

 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 727 TGQRARSHLMGQDEKLKSLA-SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
             + A+ ++   D+  K  A   +K+   +   +VE   EE R L+    K K +L++  
Sbjct: 188 ASEAAKKYMEENDQLKKEAAVGGVKLDGRDAEEKVE---EENRSLKADLKKLKDELDINK 244

Query: 786 LSCHKIAD 793
               K  +
Sbjct: 245 RKLEKAEN 252


>gi|295672093|ref|XP_002796593.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226283573|gb|EEH39139.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1783

 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 26/151 (17%)

Query: 727  TGQRARSHLMGQDEKLKS----LASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKL 779
               R  + L GQ + L+     L   L V++ ++      +E++  +  +      +   
Sbjct: 986  AKDRYEADLEGQRKTLEEQISGLKDKLSVAETDLEKSSVVMEQLQTQLDEKNKELTQTSQ 1045

Query: 780  QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            + + E        +          +    L+ ++  L+ +++           E   SVL
Sbjct: 1046 KKDDESSKVAAAEEQKTSGEKRLSL----LQDIVTNLKSQLKDA---------ENTISVL 1092

Query: 840  IV--VTEDLLDRFNAVDLARLSAKVLGGGGG 868
                 ++D      A D+ ++ A V GG  G
Sbjct: 1093 KAEISSKDAE----AKDIQKIVAFVDGGLKG 1119


>gi|206900838|ref|YP_002251231.1| probable DNA double-strand break repair Rad50 ATPase, putative
           [Dictyoglomus thermophilum H-6-12]
 gi|206739941|gb|ACI18999.1| probable DNA double-strand break repair Rad50 ATPase, putative
           [Dictyoglomus thermophilum H-6-12]
          Length = 217

 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
            G++EKL     + K  +  +  + +E+ +  +KL       + ++ ++     +I DV+
Sbjct: 27  KGEEEKLIKSFKYYKAFKNQISQKEDELNKLVKKL-KEIKDLREKILLKARIPEEINDVS 85

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGII 825
            +          +++ +++ L+  +   I+
Sbjct: 86  LII--------DDIRKLINKLEIILPEDIV 107


>gi|34485664|gb|AAQ73217.1| M protein [Streptococcus pyogenes]
          Length = 253

 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLS 787
             L  + ++L S    L     ++  +   + ++ R+L     +   Q     L ++   
Sbjct: 79  EDLTQEKQRLTSENRGLTKENEDLTQKNHRLTQDNRELTKEKEELSKQKETLGLALDKTI 138

Query: 788 CHKIADVNFMSHIISEVD--SKELKSVMDA-LQKKIQSG 823
             KI   N     I  +   +K LK  +D  +++KI+S 
Sbjct: 139 DEKIKSDNGHKKEIGXLSNVNKTLKRALDKTIEEKIKSD 177


>gi|57867160|ref|YP_188788.1| rod shape-determining protein MreC [Staphylococcus epidermidis
           RP62A]
 gi|57637818|gb|AAW54606.1| rod shape-determining protein MreC [Staphylococcus epidermidis
           RP62A]
          Length = 279

 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K S      +++++  +  +L+  + K K +L+++DLS ++    + ++    +     +
Sbjct: 68  KGSSKKDKNKIKQLEAKNEELESENKKYKKELDIKDLSKYEPISTSVIARNPDQW-MNTI 126

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
             ++D              G     K ++ ++ TE L+ R 
Sbjct: 127 --LIDK-------------GSKAGIKNNMAVMTTEGLVGRV 152


>gi|325846017|ref|ZP_08169181.1| hypothetical protein HMPREF9246_0860 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481741|gb|EGC84774.1| hypothetical protein HMPREF9246_0860 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 311

 Score = 37.8 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            S L  Q + L       +     + G++E   +   KL+   AK + ++  +D   +KI
Sbjct: 49  ISDLENQIKDLNDKKQEDQSKIDELKGKLESCKDNGEKLKQEKAKLEEEIRDKD---NKI 105

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           A +N     +   ++ EL + +  L+ +++
Sbjct: 106 AQLNKEIEELKNSNNDELIAEITQLKDELK 135


>gi|317059612|ref|ZP_07924097.1| predicted protein [Fusobacterium sp. 3_1_5R]
 gi|313685288|gb|EFS22123.1| predicted protein [Fusobacterium sp. 3_1_5R]
          Length = 201

 Score = 37.8 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLN 782
           +T  R    +  +D     ++   K     +       +E+ E+  KLQ  +     +  
Sbjct: 32  VTKTRLDEVIAERDTLKTQVSERDK-QLKELEKAAGDNKELKEQIEKLQKDNKDAADKYK 90

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +         V+         + K +K+++D  + +I+ G I+
Sbjct: 91  KDLHDLQVNNAVDLAISGAKGKNGKAIKALLDLEKAEIKDGKII 134


>gi|294495302|ref|YP_003541795.1| hypothetical protein Mmah_0625 [Methanohalophilus mahii DSM 5219]
 gi|292666301|gb|ADE36150.1| Uncharacterized coiled-coil protein [Methanohalophilus mahii DSM
           5219]
          Length = 305

 Score = 37.8 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 732 RSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           R  +   ++ LK +   L   K +   +  +  E+  + R+L     + K Q    D   
Sbjct: 20  RKEISQHEKSLKGVFKELKLHKTNIDELKEKRNELNAKVRELAKEAREEKTQR---DDIN 76

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            KIAD+    + ++   +K +K + + L+KK
Sbjct: 77  KKIADLKSRRNEVAGERNKVVKDI-NDLKKK 106


>gi|293363629|ref|ZP_06610382.1| hypothetical protein MALL_0092 [Mycoplasma alligatoris A21JP2]
 gi|292552809|gb|EFF41566.1| hypothetical protein MALL_0092 [Mycoplasma alligatoris A21JP2]
          Length = 1040

 Score = 37.8 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII---MLVGISKE 833
             L    + L    + D   + ++   ++ K L+ ++D ++ K    II   +      +
Sbjct: 787 LDLDTAKKVLKSESVKDEKVLKYVYDNLE-KSLQKLIDNIKVKKSKPIISSDISATKGSD 845

Query: 834 KKASVLIVVTEDLLDRFN 851
            + ++ I +  D  + F 
Sbjct: 846 GRLNLSISIENDPDNDFK 863


>gi|168209591|ref|ZP_02635216.1| hypothetical protein AC1_1687 [Clostridium perfringens B str. ATCC
           3626]
 gi|170712254|gb|EDT24436.1| hypothetical protein AC1_1687 [Clostridium perfringens B str. ATCC
           3626]
          Length = 344

 Score = 37.8 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 3/109 (2%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKI 791
             L  +   L      L     N++ ++E+I  E+  L+  +   ++ + N E      +
Sbjct: 169 KVLNKEKRLLNEKNINLNKKNENLLNKLEKIKSEFLNLKKKYDSIQINIHNKEKNELENL 228

Query: 792 ADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             +  +     +V+   +ELK     ++K     I++   I  EK  ++
Sbjct: 229 KSIAELREKYEKVNKELEELKEYKFNIEKNNIKNILIFGEIHSEKFINL 277


>gi|29374977|ref|NP_814130.1| scaffold protein [Enterococcus faecalis V583]
 gi|307275432|ref|ZP_07556574.1| scaffold protein [Enterococcus faecalis TX2134]
 gi|29342435|gb|AAO80201.1| scaffold protein [Enterococcus faecalis V583]
 gi|306507820|gb|EFM76948.1| scaffold protein [Enterococcus faecalis TX2134]
          Length = 190

 Score = 37.8 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-EDLSCHKIAD 793
           L   ++ LKSL +  K +  +V   + ++ E+   L+  +   K+   V   L      D
Sbjct: 48  LAEANKTLKSLEAKTKDNP-DVQKELADLKEKADALEKENKDLKINSQVSAALQSAGAKD 106

Query: 794 VNFMSHIISEV------DSKELKSVMDALQKKIQS 822
           +++    + E+      + K+L+S +  L+  I  
Sbjct: 107 IDYALFKLGELELDKDGNVKDLESKVKDLKASIPD 141


>gi|50400728|sp|Q61043|NIN_MOUSE RecName: Full=Ninein
          Length = 2035

 Score = 37.8 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
              E+ L     +   R    R+ A+  Q+       ++E+LK++   L+++ G +  +VE
Sbjct: 1441 IAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVE 1500

Query: 762  EIWEEYRKLQLIHAKRKLQL-------NVEDLSCHKIADVN-FMSHIISEVDSK--ELKS 811
             +  E  KLQ  ++  + ++       ++ +L   ++      +   I  ++ +   +++
Sbjct: 1501 LLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQT 1560

Query: 812  VMDALQKKIQS 822
            +++ L+K++  
Sbjct: 1561 MVEKLKKQVSD 1571


>gi|68473019|ref|XP_719315.1| hypothetical protein CaO19.7553 [Candida albicans SC5314]
 gi|46441128|gb|EAL00427.1| hypothetical protein CaO19.7553 [Candida albicans SC5314]
 gi|238880351|gb|EEQ43989.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 237

 Score = 37.8 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVV-GRVEEIWEEYRKLQLI-----HAKRKLQLNVE 784
           A  +L    +++  L   +K S+      R++++ E+ +++Q          RKL+  +E
Sbjct: 132 ADKYLNDDRDEVDELILRVKESEKKYERERLKKLEEDNKRIQNELDDIKLENRKLKDQIE 191

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKS 811
            +      ++N +   + E+++K +  
Sbjct: 192 RMEIRNRKELNQLDKKLFELENKLIME 218


>gi|118398846|ref|XP_001031750.1| hypothetical protein TTHERM_00756350 [Tetrahymena thermophila]
 gi|89286083|gb|EAR84087.1| hypothetical protein TTHERM_00756350 [Tetrahymena thermophila
           SB210]
          Length = 675

 Score = 37.8 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 733 SHLMGQDEKLKSL------ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            +   +++   ++      A  LK         +E +    ++L+      +L+  +++L
Sbjct: 399 KYAKEREKMETNIQQKTEEAEVLKEQNKQTKKDIENMEMLIKELETKGGSSELKKEIKEL 458

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
               I  +        E D K+L+ + D L KK + 
Sbjct: 459 E-QDIQQIEIEWKEYQETDIKKLEELKDELTKKKEK 493


>gi|57640748|ref|YP_183226.1| hypothetical protein TK0813 [Thermococcus kodakarensis KOD1]
 gi|57159072|dbj|BAD85002.1| hypothetical protein, conserved, containing leucine zipper motif
           [Thermococcus kodakarensis KOD1]
          Length = 151

 Score = 37.8 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T  I +     E  +   +  +EA         L  +  +++ LA  L+     +V ++E
Sbjct: 79  TLSIEVYKKSEEERLAKAMEEVEAR-----ERELDQKIREVEELALKLRSVAEELVEKIE 133

Query: 762 EIWEEYRKLQLIHA 775
           E+ +E+  L+L   
Sbjct: 134 ELKQEHTSLKLKAE 147


>gi|305433118|ref|ZP_07402274.1| M23/M37 family peptidase [Campylobacter coli JV20]
 gi|304443819|gb|EFM36476.1| M23/M37 family peptidase [Campylobacter coli JV20]
          Length = 400

 Score = 37.8 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-EDLSCH 789
           A   L G D+ L+     L     ++   +++  E+ +K+         QL   ++L   
Sbjct: 133 AFEVLGGLDKILQDEIFKLSKDYEDISKLIDDKQEQIKKINEDLKDYNTQLAKLQNLRQK 192

Query: 790 KIADVN-------FMSHIISEVDS--KELKSVMDALQ 817
           +++++          +  +  +     EL+  ++ L+
Sbjct: 193 QVSEIKKQKTDRAIYAKKLENLQDQQDELRKTLNQLK 229


>gi|92097746|gb|AAI15237.1| LOC407656 protein [Danio rerio]
          Length = 564

 Score = 37.8 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L     ++ +L   L+  +     +V+ + E+    ++      LQ    DL   +  
Sbjct: 279 EALQKALAEISTLTHTLEKQRLEHQQQVKGLEEQVNSSEVKKQLTALQRQT-DLLEEERK 337

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +     H  +E ++K+L+  ++ L+KK+Q
Sbjct: 338 EWQ-HKHTKAETEAKDLRFTVEELKKKLQ 365


>gi|58698609|ref|ZP_00373506.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630100|ref|YP_002726891.1| hypothetical protein WRi_002790 [Wolbachia sp. wRi]
 gi|58534879|gb|EAL58981.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592081|gb|ACN95100.1| hypothetical protein WRi_002790 [Wolbachia sp. wRi]
          Length = 375

 Score = 37.8 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 36/143 (25%)

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
           L+     +  + +E   + ++L+      + +    D +   + D     + + E++S  
Sbjct: 216 LESKVDKLCTKEKEYLSKIKELEKESLSLQKEEKESDNTLTTVNDDR--DNKVKELNSSL 273

Query: 809 LK------SVMDALQKKIQSGIIML-------------------VGISKEKKASV-LIVV 842
           LK       +  AL +K +  ++ L                   V    +KK  + +I  
Sbjct: 274 LKQSSQIEQLQKALLEKKKEEVLFLQRMIEYVTDEVEKLVRENEVIRDDDKKVILQVIQA 333

Query: 843 TEDLLDRFNAVDLARLSAKVLGG 865
           T+ +        L   +A+ L G
Sbjct: 334 TKSV--------LVEEAAQYLPG 348


>gi|326922133|ref|XP_003207306.1| PREDICTED: kinesin-like protein KIF15-like [Meleagris gallopavo]
          Length = 1398

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 39/110 (35%), Gaps = 10/110 (9%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---- 784
           ++A   +  + +  +   S ++        +  ++ +   KL+   A+ +  L+ E    
Sbjct: 709 EQAYEAIAEELKMAQEQLSTMQTKLDEEESKNIKLQQHINKLEHHSAQIQELLSSERNDW 768

Query: 785 -DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
                  +  +  +     +  SK      D L+ ++    I+L    KE
Sbjct: 769 SKEREELLEQIKLLEKQFQDAQSK-----ADILKSEVHDLRIVLQSADKE 813


>gi|319426838|gb|ADV54912.1| FimV N-terminal domain protein [Shewanella putrefaciens 200]
          Length = 1097

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRKLQLIHAKRK 778
           R+EA     A    +   ++L      L V   +V     +VEE+ ++   L+      K
Sbjct: 219 RLEA-----AERKTLSLTDELARTQDQLSVRNSDVEALKAKVEELNQQIAVLEETLLASK 273

Query: 779 LQLNVEDLSCHKIADVNFMSHIISE--VDSKEL-KSVMDA 815
            Q              + +S    +  ++  +L + +++ 
Sbjct: 274 QQNQALKAEVEAAQSADVVSVSEPDMPIEPDDLWRKIINN 313


>gi|302349006|ref|YP_003816644.1| hypothetical protein ASAC_1209 [Acidilobus saccharovorans 345-15]
 gi|302329418|gb|ADL19613.1| hypothetical protein ASAC_1209 [Acidilobus saccharovorans 345-15]
          Length = 288

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 21/111 (18%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEE-----------------IWEEYRKLQLIH 774
              L    + L    +  K+S   V  R+EE                 + EE  +L+   
Sbjct: 84  IEQLREARQLLDKEGNVAKLSLKRVQKRIEELEWRQQTSVLPPQEERRLVEEIERLE-EL 142

Query: 775 AKRKLQLNVEDLSCHKI-ADVNFMSHIISEVDSK--ELKSVMDALQKKIQS 822
           A+R  +   E++S  +I A+V  +   +++ ++K  EL+     L+ +I S
Sbjct: 143 AERIRKARQEEISIMEIEAEVKALKMKLNDFNTKINELRQKAGNLKAQIAS 193


>gi|257467905|ref|ZP_05632001.1| chromosome segregation ATPase-like protein [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062194|ref|ZP_07926679.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687870|gb|EFS24705.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 1346

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----------RKLQLIHAKRK 778
           +RAR +L+     LK    FLK+S+ ++  ++ E+ ++Y          + L+  +  + 
Sbjct: 481 ERARDNLVENFYILKEKNEFLKISKSDL-DKIIELIKKYEGLIEAGEIKKILEKNYNLKN 539

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            +L  E +    I  V    + I   + +ELK++ D++
Sbjct: 540 QELQQEKIELGHIKTVKTREYKIELKELEELKNMEDSV 577


>gi|238631893|gb|ACR50691.1| pneumococcal surface protein A [Streptococcus pneumoniae]
          Length = 257

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 49/118 (41%), Gaps = 15/118 (12%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           +++ + LK  +  +  +  E+ ++  +L+ +      +   +D    + A+      +  
Sbjct: 1   EAIEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAAEAELNKKV-- 58

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARL 858
               + L++ +  L+K+I +  I+L G   E         T  L ++  A   +LA+ 
Sbjct: 59  ----ESLQNKVADLEKEISNLEILLGGADSEDD-------TAALQNKLAAKQAELAKK 105


>gi|323340517|ref|ZP_08080772.1| hypothetical protein HMPREF0542_11203 [Lactobacillus ruminis ATCC
           25644]
 gi|323092061|gb|EFZ34678.1| hypothetical protein HMPREF0542_11203 [Lactobacillus ruminis ATCC
           25644]
          Length = 370

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 22/128 (17%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDL 786
           ++A S    +  +LK     L     +   R+ E+ E+  +        K+K + +   L
Sbjct: 126 EKATSEHDEKVAELKKEIEELDKDASDYQDRLAELNEKIEQADKDLQDFKQKQEDDYAKL 185

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +         +   +    ++EL+ +++  ++K+                  LI   +  
Sbjct: 186 AQELADQQKQLEQRL----AEELQDLINQNKQKLAE----------------LIAKNKAA 225

Query: 847 LDRFNAVD 854
           LD+  A D
Sbjct: 226 LDKLKADD 233


>gi|219519243|gb|AAI44914.1| Ninein [Mus musculus]
          Length = 2035

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
              E+ L     +   R    R+ A+  Q+       ++E+LK++   L+++ G +  +VE
Sbjct: 1441 IAELELEKQKLQELTRNLRERVTALVRQKDAPSQGQKEEELKAMMQDLQITCGEMQRKVE 1500

Query: 762  EIWEEYRKLQLIHAKRKLQL-------NVEDLSCHKIADVN-FMSHIISEVDSK--ELKS 811
             +  E  KLQ  ++  + ++       ++ +L   ++      +   I  ++ +   +++
Sbjct: 1501 LLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQT 1560

Query: 812  VMDALQKKIQS 822
            +++ L+K++  
Sbjct: 1561 MVEKLKKQVSD 1571


>gi|213982785|ref|NP_001135564.1| myosin, heavy chain 6, cardiac muscle, alpha, gene 2 [Xenopus
            (Silurana) tropicalis]
 gi|195540177|gb|AAI68055.1| Unknown (protein for MGC:185622) [Xenopus (Silurana) tropicalis]
          Length = 1936

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                  +   L +    +K S    + ++E +  E + LQ   +    Q+     S H+I
Sbjct: 1470 LEASQKESRSLSTEVFKMKNSYEEALDQLETLKRENKNLQQEISDLTEQVAEAGKSIHEI 1529

Query: 792  ADVN 795
                
Sbjct: 1530 EKAK 1533


>gi|189234525|ref|XP_976164.2| PREDICTED: similar to GA10507-PA isoform 4 [Tribolium castaneum]
          Length = 502

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 700 SSTGEIMLLYIV-SESSIRAGIRR----IEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
             T ++  +     E  +    +R    +E    +RA       ++++K++   ++ SQ 
Sbjct: 232 PDTIDVQQMKAQAREEKLAKQQQREKLQLEIAARERAEKKQQEYEDRIKAMQEEMERSQA 291

Query: 755 NVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM-----SHIISEVDS 806
           N++     +  + E+ ++LQ    + + + N       ++ +   M       +  E+ +
Sbjct: 292 NLLEAQEMIRRLEEQLKQLQAAKEELEKRQNELQAMMERLEESKNMEAAERQKLEEEIQA 351

Query: 807 KEL--KSVMDALQKKIQSG 823
           K+L  + + D +  K    
Sbjct: 352 KQLEVQRIQDEVTAKDNET 370


>gi|168204610|ref|ZP_02630615.1| partition protein [Clostridium perfringens E str. JGS1987]
 gi|170663709|gb|EDT16392.1| partition protein [Clostridium perfringens E str. JGS1987]
          Length = 397

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++A  +   +++ +K   S LK     +   +E+  EE ++L+    + +L+  +E    
Sbjct: 247 EKALEY-KEREKLIKE-NSTLKSK---LNSNIEKTNEERKELEGQL-RIELEKELESKYA 300

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            K+  +       ++  +K LK  +  L+      +
Sbjct: 301 DKLNSIKDEVKKQTDEKAK-LKDEISKLKANAPKDV 335


>gi|323507745|emb|CBQ67616.1| conserved hypothetical protein [Sporisorium reilianum]
          Length = 965

 Score = 37.8 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           A  LK  +       + +  E ++L+   AK   +   +     K    NF++  + +  
Sbjct: 441 AERLKAKEA------KRLEREAKELEKQKAKEAKEAEQKKAQEQKKRQANFLTSFVKKAA 494

Query: 806 SKE 808
            K 
Sbjct: 495 PKS 497


>gi|307180901|gb|EFN68709.1| Laminin subunit beta-1 [Camponotus floridanus]
          Length = 2183

 Score = 37.8 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 729  QRARSHLMGQDEKLKSLASFLKV---SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
             +A + +    + L  +A   K       +    VE +    ++LQ   AK    L    
Sbjct: 2011 DKAEADVSKSQKDLADIADVTKAAQIQANSTTQSVEALDNRLKQLQTQSAKNAFVLKEIA 2070

Query: 786  LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +  +K+ +          +D+K  K + +  ++  +S
Sbjct: 2071 VEANKVGN------EAQMIDAKT-KKLAEEYKRADES 2100


>gi|296221253|ref|XP_002756654.1| PREDICTED: uncharacterized protein C10orf118-like isoform 1
           [Callithrix jacchus]
          Length = 808

 Score = 37.8 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 44/97 (45%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           T ++  + +   + +++ L   +K S+  +V +        ++L    A+R  Q N +  
Sbjct: 244 TEKQHMNTIKQLESRIEELNKEVKASKDKLVAQDIAAKNAVQQLHKEMAQRLEQANKKCE 303

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
              +  +   M ++  E +S +L+   + L+KK++  
Sbjct: 304 EARQEKEAMVMKYVRGEKESLDLRKEKETLEKKLRDA 340


>gi|253682455|ref|ZP_04863252.1| resolvase [Clostridium botulinum D str. 1873]
 gi|253562167|gb|EES91619.1| resolvase [Clostridium botulinum D str. 1873]
          Length = 524

 Score = 37.8 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 42/106 (39%), Gaps = 18/106 (16%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVG------------RVEEIWEEYRKLQLIHAKRKLQ 780
           + +  +++ +K+L   L     ++              R+E++  +Y++L+    K +L 
Sbjct: 412 NAIKDEEKAIKNLTMQLSTISKSLASKPIINLLEKKTSRLEKLKNQYKQLKDNLTKTQLN 471

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           L   +     + +  FM      ++ K++      L   +   +I+
Sbjct: 472 LGNINNLADNLNNFKFMIDKTENIEQKKM------LINSVIEDVIV 511


>gi|223040952|ref|ZP_03611214.1| hypothetical protein CAMRE0001_2654 [Campylobacter rectus RM3267]
 gi|222877796|gb|EEF12915.1| hypothetical protein CAMRE0001_2654 [Campylobacter rectus RM3267]
          Length = 329

 Score = 37.8 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 736 MGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL---SCHKI 791
             +++  K  A+  K      +   +++   E +  Q    K K+   + +L      K+
Sbjct: 44  KAKEDIAK--ANLNKDPDNEELKAALQKAQSELKNAQAELEKAKMAEKIANLDTVELKKV 101

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            D N          S++ K  +D    K+  G  ++VG   
Sbjct: 102 GDTNVYK-------SEDGKYTVDLGSDKVAEGKALVVGKDN 135


>gi|145548343|ref|XP_001459852.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427679|emb|CAK92455.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2175

 Score = 37.8 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 739  DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
             E++KSL   +      +    +++ ++ +++Q  + K + +    +    K+ +     
Sbjct: 1079 QERIKSLEQQISSKDQEL----KKLKDQIKEIQKENEKLQSKQTEMEQLQQKLTEKQ--- 1131

Query: 799  HIISEVDSKELKSVMDALQKKIQSG 823
              I +++  +++ ++  ++KK Q  
Sbjct: 1132 SKIEDLE-NQIEELLKEIKKKSQEN 1155


>gi|18855010|gb|AAL79702.1|AC087599_21 unknown protein [Oryza sativa Japonica Group]
          Length = 789

 Score = 37.8 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
             HL  + E+ + L   L+    ++   ++++  E   L++   +       +D      
Sbjct: 331 LHHLNAEIERYRGLVEVLQAKIEDLEHEIQKLMAEKNDLEIKAEEALQDSGKKDFK---- 386

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +++ M+  +    SKE+  ++D    + +   
Sbjct: 387 DEIHVMAASL----SKEM-ELLDNQMNRSKDAA 414


>gi|168577033|ref|ZP_02722862.1| PspA [Streptococcus pneumoniae MLV-016]
 gi|183577303|gb|EDT97831.1| PspA [Streptococcus pneumoniae MLV-016]
          Length = 492

 Score = 37.8 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 49/118 (41%), Gaps = 15/118 (12%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           +++ + LK  +  +  +  E+ ++  +L+ +      +   +D    + A+      +  
Sbjct: 246 EAIEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAAEAELNKKV-- 303

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARL 858
               + L++ +  L+K+I +  I+L G   E         T  L ++  A   +LA+ 
Sbjct: 304 ----ESLQNKVADLEKEISNLEILLGGADSEDD-------TAALQNKLAAKQAELAKK 350


>gi|150865547|ref|XP_001384811.2| hypothetical protein PICST_32134 [Scheffersomyces stipitis CBS
           6054]
 gi|149386803|gb|ABN66782.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 575

 Score = 37.8 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 729 QRARSHLMGQDEKLK-SLASFLKVSQGNVVGRVEEIWEEYRK-LQLIHAKRKLQLNVEDL 786
           ++A      + E+ K +L   +K  Q  +  ++E+   E +K ++   A+ + QL  E  
Sbjct: 138 KKALHETKEEVEREKIALRERIKKEQAELREQIEKEQAEKKKQIEREQAELREQLAREQA 197

Query: 787 SCHKIA----DVNFMSHIISEVDSKEL 809
           +   +     DV  + HI  + D + L
Sbjct: 198 TLKDVKQYHRDVYELKHIFPDHDFEVL 224


>gi|49471747|gb|AAT66150.1| MlpD precursor [Mycoplasma arthritidis]
          Length = 251

 Score = 37.8 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDL 786
             +  L   ++ LK + S  K     +     ++    ++L+       K K  L + DL
Sbjct: 131 EVKEELKKAEDALKEIES--KSYLKTLKDGFNKLISSLKELEKKVESILKEKRLLELNDL 188

Query: 787 SCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQSG 823
                         + +   D ++ K  ++ ++++++  
Sbjct: 189 KKEIAKKQKEFEKTLDDNSSDKEKAKKTLNEIKEELKKA 227


>gi|311252148|ref|XP_003124954.1| PREDICTED: testis-specific gene 10 protein-like [Sus scrofa]
          Length = 697

 Score = 37.8 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 730 RARSHLMGQDEKLKSLA---SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           R R  L   +++L  +A     L +   ++     +  +E + L         +L+    
Sbjct: 327 RMRRQLDETNDELAQIARXRDILALETDSLPETFSKAKQENQALSKKLNDTHNELSDIKQ 386

Query: 787 SCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
                  +VN + +I+   +S+  + +MD L+K  +  
Sbjct: 387 KVQDTNLEVNKLKNILKSEESEN-RQMMDQLRKANEDA 423


>gi|259488265|tpe|CBF87581.1| TPA: Golgi matrix protein, putative (AFU_orthologue; AFUA_1G08830)
           [Aspergillus nidulans FGSC A4]
          Length = 510

 Score = 37.8 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 704 EIMLLYIVSESSIRAGIRR---IEAITGQRARSH---LMGQDEKLKSLASFLKVSQGNVV 757
           +       +ES  R  + R   I+A  G+R +     +     +++ L      ++    
Sbjct: 130 DAESKKEHAESQYRGLLERVNTIKAQLGERLKEDAEEISQARSRIEELEEQNSSTKEEYE 189

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            ++ E+ EE +++    ++ + + N+  
Sbjct: 190 AKISELSEENQRMAKELSELRERTNLSQ 217


>gi|148983521|ref|ZP_01816840.1| pneumococcal surface protein A [Streptococcus pneumoniae SP3-BS71]
 gi|147923668|gb|EDK74780.1| pneumococcal surface protein A [Streptococcus pneumoniae SP3-BS71]
          Length = 596

 Score = 37.8 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           +++ + LK  +  +  +  E+ ++  +L+ +      +   +D    + A+      +  
Sbjct: 245 EAIEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAAEAELNKKV-- 302

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
               + L++ +  L+K+I +  I+L G   E 
Sbjct: 303 ----ESLQNKVADLEKEISNLEILLGGADSED 330


>gi|328787214|ref|XP_001121560.2| PREDICTED: hypothetical protein LOC725751 [Apis mellifera]
          Length = 465

 Score = 37.8 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 10/122 (8%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IE+ + Q   +++  + +  K +   LKV+    V  ++ +  +  +L     + K    
Sbjct: 40  IESKSLQEELNNVNKKKQLTKEI-DELKVTVDEKVAELKLLDTKNMELLKEIERLKFSTT 98

Query: 783 VEDLSCHKIAD---VNFMSHIISEV--DSKELKS----VMDALQKKIQSGIIMLVGISKE 833
            E+           V  +   I+E+  + K L+     + + ++    + ++    I K 
Sbjct: 99  EEETIAETKKSTITVKHLKETITELQNEIKVLRESNIGLNNEIKNINSNKVVDDFSIQKN 158

Query: 834 KK 835
            K
Sbjct: 159 DK 160


>gi|291230002|ref|XP_002734961.1| PREDICTED: mCG5312-like [Saccoglossus kowalevskii]
          Length = 983

 Score = 37.8 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 30/307 (9%), Positives = 78/307 (25%), Gaps = 24/307 (7%)

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D   A      +   D+  +    +V   + +  +           D   R      H  
Sbjct: 455 DRFKATIHEPMILTIDMHNREYAKYVETHVPDNDLRAFVCENAEDQDAFMREIRDTQHLR 514

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL-- 647
            + +   +  +      Q    +      F         + E           + +    
Sbjct: 515 VNAVKSPMQDLESFRPQQPIEQL--RRWGFTTYLKDLFEAPEAVMAYLCKQHRVHEVPIG 572

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
              T+    +   +SG        Y   +R      +     SS +     +  + +   
Sbjct: 573 TPYTQEHIADVIASSGLRRFYTADYMYIIRQSRYGNKATSSSSSRINNAQLLYVSID-PT 631

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR-------- 759
                E  +R    R+    G+     L    ++L    + L+  +  +  R        
Sbjct: 632 QKRELEQQLREAETRLH--DGEERYKELAKMRQELAEQDNSLREKKKQLQNRRNRRQTVL 689

Query: 760 --VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             ++   +   + +      + +    +    KI +   +  I       +LK ++    
Sbjct: 690 QNIQAKKDSIARNEREALNIEHEEMKTNQKIQKINERKVVLVI-------DLKDLIQKCM 742

Query: 818 KKIQSGI 824
              +  +
Sbjct: 743 SSNKDKV 749


>gi|242398710|ref|YP_002994134.1| chromosome segregation ATPase [Thermococcus sibiricus MM 739]
 gi|242265103|gb|ACS89785.1| chromosome segregation ATPase [Thermococcus sibiricus MM 739]
          Length = 1177

 Score = 37.8 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           E++      E  I   + RI A      ++ +   +E +KSL + L      +  + + +
Sbjct: 821 ELIPRKADLEEEIEGIVNRINAF-----KASIKQNEEDIKSLQAQL----EELQEKEQAV 871

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
            +E + L+    + + +++       K+ DV
Sbjct: 872 KDELKALRDERDRLREEISQMREEKEKLRDV 902


>gi|124506625|ref|XP_001351910.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|23504937|emb|CAD51721.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 742

 Score = 37.8 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 28/317 (8%), Positives = 94/317 (29%), Gaps = 29/317 (9%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
            VE++ D++           +    I       I     +    +   +I          
Sbjct: 24  NVEIIMDESNLKTNVKTHKENNCKVINIYSCYAIWLCMNEIYPSWFDISIHPAQFETEID 83

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +    + Y N          T  +   LS +  +      S +    L         ++ 
Sbjct: 84  AYECLLKYLNEYHEKKYEKITKQILDKLSALTINEFIDIYSLVILAAL---------VSD 134

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            + K I + ++        +   + + +  + + +      +  ++V+   +E ++    
Sbjct: 135 DKQKHINNILSVSHETQKYIHNVVEHLDKEVINESLRTEIKQLKEKVKYFEMENDNLNNC 194

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +                +    +  +    ++I A   +    ++   +E  K +    
Sbjct: 195 ITEK------------NKIIEEDKEKMNNLQKQINAACEKTKNQYMNQIEEHEKKINELQ 242

Query: 750 KVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
              +  +  ++    ++  + ++L+      K +    D+  +KI         +     
Sbjct: 243 NNLEKQMKDKLHIENDLKNKIKELEDEQNILKQENANIDILQNKINTYK---EKLE--SM 297

Query: 807 KELKSVMDALQKKIQSG 823
             ++++   L+ K++  
Sbjct: 298 MTIQNINKELEDKLKEN 314


>gi|118367823|ref|XP_001017121.1| Kinesin motor domain containing protein [Tetrahymena thermophila]
 gi|89298888|gb|EAR96876.1| Kinesin motor domain containing protein [Tetrahymena thermophila
           SB210]
          Length = 1011

 Score = 37.8 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV    E  L  I+ ES    G  +   I   R       +  +    A   K  Q  + 
Sbjct: 356 HVPF-RESKLTRILKESL--GGNSKTTLICAARFSDRFQEETIQTLRFAREAKKIQNELA 412

Query: 758 GRV----EEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKS 811
            ++    E++ E+ +KL+  +     Q+    +  S  +  +++ +S  ++   +  ++ 
Sbjct: 413 VKIVYTEEQLLEQIQKLKQENEMLINQIFNLKKQYSQDQANNLDLISQNLTATSANTIEQ 472

Query: 812 VMDALQKKIQSG 823
           +    +  +++G
Sbjct: 473 INKNNKDTLKNG 484


>gi|67477477|ref|XP_654202.1| myosin heavy chain [Entamoeba histolytica HM-1:IMSS]
 gi|56471228|gb|EAL48814.1| myosin heavy chain [Entamoeba histolytica HM-1:IMSS]
          Length = 1312

 Score = 37.8 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWE-------EYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            + +     K    ++   +++  +       E + L+L     K +L  ++   +K  D
Sbjct: 743 VVNAATESYKKQIDDLNKTIQDAKDQEKDLRDEIKDLRLDIVDLKGELESKEQEVNKAGD 802

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQ 821
                 ++ + +++ LK  ++ L+ KI+
Sbjct: 803 ----KLVLIDDENQSLKQTVNDLKLKIK 826


>gi|312134984|ref|YP_004002322.1| hypothetical protein Calow_0956 [Caldicellulosiruptor owensensis
           OL]
 gi|311775035|gb|ADQ04522.1| Uncharacterized protein family UPF0133 [Caldicellulosiruptor
           owensensis OL]
          Length = 113

 Score = 37.8 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 7/68 (10%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSC--------------HKIADVNFMSHIISEVD 805
           + ++ ++ +K+Q    K + +LN +++                 ++  +  +  ++   D
Sbjct: 15  INQLQKQAKKMQEEIEKLQEELNQKEIEVSSGGGAVKVIINGKKEVKSIQILPEVVDPED 74

Query: 806 SKELKSVM 813
            + L+ ++
Sbjct: 75  IETLQDLI 82


>gi|156100515|ref|XP_001615985.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148804859|gb|EDL46258.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 455

 Score = 37.8 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 50/131 (38%), Gaps = 20/131 (15%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H   T +IML  +  E  +      +          +L   +  + S    LK S+  + 
Sbjct: 102 HSKYTYQIMLQRLKKEKKM------LYF--------YLNSLERTVTS----LKNSERQLH 143

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +++I  E + L+    ++K +L        +I     ++   S +  +  + +++  +
Sbjct: 144 NAIQKITSENKNLKKSIDEKKTELMKAKNKNEEILKYMNVNKEHSNI-LRIRREMINEYK 202

Query: 818 -KKIQSGIIML 827
             K+ +  I L
Sbjct: 203 NNKLHNADIAL 213


>gi|123476431|ref|XP_001321388.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121904213|gb|EAY09165.1| hypothetical protein TVAG_363800 [Trichomonas vaginalis G3]
          Length = 818

 Score = 37.8 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 13/106 (12%)

Query: 738 QDEKLKSLASFLKVSQGN-------VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
            + K+  +++ LK            +  R+E +  E  +L+  +AK K  +        K
Sbjct: 580 MNAKVMKISN-LKKKIEEQSKENATLHERIEGLMAEIARLKEENAKHKGNIKEMQSEMSK 638

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           I + N     +      ELK + + + ++ ++ I+ ++G    +KA
Sbjct: 639 IKEENLDRQRLE----NELK-LANQVNEEQRTNILKVMGDIDAEKA 679


>gi|25151529|ref|NP_508848.2| Lin-5 (Five) Interacting protein family member (lfi-1)
           [Caenorhabditis elegans]
 gi|21629445|gb|AAM69078.1|U64862_3 Lin-5 (five) interacting protein protein 1, isoform a
           [Caenorhabditis elegans]
          Length = 2396

 Score = 37.8 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 15/102 (14%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             AR      DE   S+    K     +  RVE +  E  +L+      K +    +   
Sbjct: 713 DDARKLRDEMDEHTNSIQEEFKTRIDELNRRVENLLRENNRLKSEVNPLKDKYRDLE--- 769

Query: 789 HKIADVNFMSHIISEVD-----SKELK----SVMDALQKKIQ 821
               + N     I E +     S +++      +D L++K  
Sbjct: 770 ---NEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLREKYD 808


>gi|1661003|dbj|BAA13639.1| synaptonemal complex protein 1 [Mus musculus]
          Length = 693

 Score = 37.8 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             Q + L+S  + LK    N    +EE+ +E + L+   +    QLN  ++   K+ 
Sbjct: 515 EKQMKILESKCNNLKKQVENKSKNIEELHQENKTLKKKSSAEIKQLNAYEIKVSKLE 571


>gi|67521876|ref|XP_658999.1| hypothetical protein AN1395.2 [Aspergillus nidulans FGSC A4]
 gi|40746069|gb|EAA65225.1| hypothetical protein AN1395.2 [Aspergillus nidulans FGSC A4]
          Length = 691

 Score = 37.8 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 704 EIMLLYIVSESSIRAGIRR---IEAITGQRARSH---LMGQDEKLKSLASFLKVSQGNVV 757
           +       +ES  R  + R   I+A  G+R +     +     +++ L      ++    
Sbjct: 130 DAESKKEHAESQYRGLLERVNTIKAQLGERLKEDAEEISQARSRIEELEEQNSSTKEEYE 189

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            ++ E+ EE +++    ++ + + N+  
Sbjct: 190 AKISELSEENQRMAKELSELRERTNLSQ 217


>gi|313665178|ref|YP_004047049.1| lipoprotein, PARCEL family [Mycoplasma leachii PG50]
 gi|312949531|gb|ADR24127.1| putative lipoprotein, PARCEL family [Mycoplasma leachii PG50]
          Length = 761

 Score = 37.8 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 56/140 (40%), Gaps = 14/140 (10%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRV-------EEIWEEYRKLQLIHAKRKLQLNVED 785
             L   ++    ++S L+ +      ++       +++ EE  K+Q      K Q   + 
Sbjct: 33  KQLSKLEQLQNEISS-LETNVNKYNEQINKTELEKQQLLEEINKIQKEINSLKEQETSKI 91

Query: 786 LSCHKI-ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
              + +    N ++  I  ++S+   + +D + KK Q  I +L    KE K ++    T+
Sbjct: 92  EELNLLTNKKNTINKQIENLNSQI--NSIDQISKKDQEKISLLTKQIKEVKQNLSDATTQ 149

Query: 845 D--LLDRFNAVDL-ARLSAK 861
               +    +++L  +   +
Sbjct: 150 KNINIKEIKSLELQVKELKE 169


>gi|164708127|gb|ABY67186.1| pneumococcal surface protein A [Streptococcus pneumoniae]
          Length = 467

 Score = 37.8 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 49/118 (41%), Gaps = 15/118 (12%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           +++ + LK  +  +  +  E+ ++  +L+ +      +   +D    + A+      +  
Sbjct: 221 EAIEAKLKKGKAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAAEAELNKKV-- 278

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARL 858
               + L++ +  L+K+I +  I+L G   E         T  L ++  A   +LA+ 
Sbjct: 279 ----ESLQNKVADLEKEISNLEILLGGADSEDD-------TAALQNKLAAKQAELAKK 325


>gi|188997064|ref|YP_001931315.1| RNA binding S1 domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932131|gb|ACD66761.1| RNA binding S1 domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 565

 Score = 37.8 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 32/151 (21%)

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--------------------KLQLNV 783
                LKV    V  ++ E+ +E RKL+L                         K++   
Sbjct: 305 KAKKNLKVG-NKVKAKIIELDKENRKLKLSIKALQENPVEKFLKENPVGSVIEAKVKDAK 363

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           + ++   + ++  +  +    D+K +KS+   L++       +L G+ K+K   +L+ + 
Sbjct: 364 QKVAFIDLGEIEGIVKLEDATDNKNIKSISSVLKEDKVYKFKVL-GVEKDK---ILLGIK 419

Query: 844 -------EDLLDRFNAVDLARLSAKVLGGGG 867
                   + + ++   D+ +   K L   G
Sbjct: 420 QLLEEDWNEFISKYKVGDVVKGKVKKLIEKG 450


>gi|156093683|ref|XP_001612880.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148801754|gb|EDL43153.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1535

 Score = 37.8 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 23/113 (20%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----------LQL 772
            A   +  +  L  ++E L+     L+  Q  +  + +++ EE ++           LQ 
Sbjct: 642 HAKCNRNYKEELCRKEEHLEE----LQTKQKELQTKQKQLQEELKEKEKTIHRNDACLQK 697

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSH-------IISEVDSKEL-KSVMDALQ 817
           +    KL    +D    ++   N            +S ++S  L +  M+ L+
Sbjct: 698 MEEAIKLHEQEKDNLNEELKKKNLFIESKEEKIDRLSNIESDLLKRGKMNQLK 750


>gi|307206630|gb|EFN84609.1| Centromeric protein E [Harpegnathos saltator]
          Length = 2613

 Score = 37.8 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 730  RARSHLMGQDE----KLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLN 782
             A + L  + E    ++  + + LK     +      +E +  E + L+   ++RK  ++
Sbjct: 2122 DAYNDLNQELEATKSRVAEIMNLLKTKCDELTEYKNNIETLMHENKFLKQQISERKANVD 2181

Query: 783  VEDLSCH--KIADVNFMSHIISEVDSKELKSV 812
                     K+A+   +  I  +++  ELK+ 
Sbjct: 2182 QYKTEMEALKLANEKAVDVIKDKLNLAELKNA 2213


>gi|227499388|ref|ZP_03929499.1| possible FAD-dependent dehydrogenase [Anaerococcus tetradius ATCC
           35098]
 gi|227218450|gb|EEI83693.1| possible FAD-dependent dehydrogenase [Anaerococcus tetradius ATCC
           35098]
          Length = 512

 Score = 37.8 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 25/139 (17%)

Query: 764 WEEYRK-LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKI 820
            ++ +K ++    K+     +   S      +N++  ++ + D  +K +K + + +    
Sbjct: 15  KDQLKKDIEKTINKKIDGYQIYKKSIDARKGINYVYQVLIDTDLSAKTIKRLKNNISDYK 74

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK--VLGGGGGGGRPHMAQSG 878
           +  +I+      + K    +VV       F+A  LA+   K  ++  G            
Sbjct: 75  EEDLIL----ENKNKIKSALVVGAGPAGLFSAYALAKAGVKVTIIEQG------------ 118

Query: 879 GPNGNKADQAIAGVASFLK 897
                K ++ I  +  F+K
Sbjct: 119 ----EKVEKRIKTIEDFIK 133


>gi|496998|gb|AAA53358.1| outer surface protein D [Borrelia afzelii]
          Length = 249

 Score = 37.8 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 50/129 (38%), Gaps = 18/129 (13%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
               +  K     LK    +    +E++ +E +++     + K  + +   +  K  D  
Sbjct: 138 QNMQKLYKEQEEQLKTLSDS--DEIEQVSDEIKQVSDEIKQAKEAVEIAWKATVKAKD-- 193

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
                + +V+   +K  +D ++ +  +   +      E+ A +++ + +++       ++
Sbjct: 194 ----ELIDVE-NAVKEALDKIKTETANNTKL---TDIEEVAELVLQIAKNVA------EI 239

Query: 856 ARLSAKVLG 864
           A+    +L 
Sbjct: 240 AQEVVALLN 248


>gi|301799297|emb|CBW31823.1| pneumococcal surface protein PspA [Streptococcus pneumoniae OXC141]
          Length = 848

 Score = 37.8 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           +++ + LK  +  +  +  E+ ++  +L+ +      +   +D    + A+      +  
Sbjct: 245 EAIEAKLKKGEAELNAKQAELAKKQTELEKLLDSLDPEGKTQDELDKEAAEAELNKKV-- 302

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
               + L++ +  L+K+I +  I+L G   E 
Sbjct: 303 ----ESLQNKVADLEKEISNLEILLGGADSED 330


>gi|212695703|ref|ZP_03303831.1| hypothetical protein ANHYDRO_00223 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677376|gb|EEB36983.1| hypothetical protein ANHYDRO_00223 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 276

 Score = 37.8 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 746 ASFLKVSQGNVVGR-----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN----- 795
           +  +K  +  +  +     +E++  E + L   +A     +N +D    +   +      
Sbjct: 57  SELIKAVEDTIGSKQTRSEIEKLKIENKNLLKENANLNEIINRKDFLKAEKKAMKNEKYD 116

Query: 796 FMSHIISEVDSKELKS--VMDALQKK-IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
           ++   I   D K ++    +D  +K  ++   ++L  I   + +S +I      + + NA
Sbjct: 117 YIKAQIISSDVKSMQESFFIDKGKKDGLKVNDVILQAIGDSEYSSAVIG----KVVKVNA 172


>gi|194214671|ref|XP_001916745.1| PREDICTED: coiled-coil domain containing 11 [Equus caballus]
          Length = 461

 Score = 37.8 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 743 KSLASFLKVSQGNVVGRVE---EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           +     LK  +  +V + +   ++  E  KL+    KR+++  ++     KI  +     
Sbjct: 245 RQAEQRLKEEEARLVEKDKAQVKLENEQDKLKTQKTKREIKTALQKALQEKIEKIQQGYR 304

Query: 800 IISEVDSK-------ELKSVMDALQKKIQSGI 824
              ++D K       +L+   D  ++K +  +
Sbjct: 305 EEQDLDMKLVQMALQDLQEEADKKKQKREEMV 336


>gi|162424919|gb|ABX90106.1| emm-like protein [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 248

 Score = 37.8 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 28/142 (19%)

Query: 733 SHLMGQDEKLKSLASF---LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-- 787
             L  ++E++  LA+    LK +    V  +++   E    Q   A  +LQL  ++    
Sbjct: 97  DALNNKNEQIAKLANDNDGLKEAIEGYVDTIQQASREVSAKQQELAAAQLQLEAKNAEIE 156

Query: 788 ---------CHKIADVNFMSHIISEVDSKELKSVMD---------ALQKKIQSGIIMLVG 829
                      +IA +   + ++  +     + + D         A + K++S  +ML  
Sbjct: 157 DLKRQDNMKAEEIAKLESEAKMLENLIGSGKRELGDLEAKLADANAQKAKLESEAVMLEN 216

Query: 830 ISKEKKASVLIVVTEDLLDRFN 851
           +    K  +      DL  + +
Sbjct: 217 LIGSGKREIA-----DLPAKLD 233


>gi|153607586|dbj|BAF74055.1| merozoite surface protein-1 [Plasmodium cynomolgi]
          Length = 1838

 Score = 37.8 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 726  ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNV 783
            +T     ++     +  K     +      V   + +  EE +K++   +K   K QLN 
Sbjct: 1556 VTANDGLAYYQKMGDLYKKHLDEVNAQIKEVEANINKHDEEIKKIESEASKANDKNQLNA 1615

Query: 784  EDLSCHK 790
            +     K
Sbjct: 1616 KKEELQK 1622


>gi|297789175|ref|XP_002862580.1| hypothetical protein ARALYDRAFT_920517 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297308197|gb|EFH38838.1| hypothetical protein ARALYDRAFT_920517 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 118

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-- 787
              S  +    +++  A  LK    ++  +++E+ +E +KL++   + + QL     S  
Sbjct: 49  AIISDAIRMVNQVRDEAQKLKDLNSSLQEKIKELKDEKQKLKVEKERIEQQLKAIKTSFD 108

Query: 788 --CHKIADV 794
                ++ +
Sbjct: 109 SMAQLVSGI 117


>gi|297459620|ref|XP_002700649.1| PREDICTED: ninein (GSK3B interacting protein) [Bos taurus]
 gi|297479598|ref|XP_002690881.1| PREDICTED: ninein (GSK3B interacting protein) [Bos taurus]
 gi|296483242|gb|DAA25357.1| ninein (GSK3B interacting protein) [Bos taurus]
          Length = 2050

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 58/136 (42%), Gaps = 12/136 (8%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            H ++  E+       +   R    R+ A+  Q+       ++E+LK++   L+++   + 
Sbjct: 1450 HQATIAELEREKKKLQELTRKLRERVTALVKQKDVPSQGEKEEELKAMMHDLQITCSEMQ 1509

Query: 758  GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF---------MSHIISEV--DS 806
             +VE +  E  KLQ  ++  + ++   +     I+++           M   I  V  + 
Sbjct: 1510 QKVELLRYESEKLQEENSILRNEITTLNEE-DSISNLKLGKLSGSQEEMWQKIETVKQEK 1568

Query: 807  KELKSVMDALQKKIQS 822
              ++ +++ L+K+I  
Sbjct: 1569 AAVQKMVENLKKQISE 1584


>gi|296395118|ref|YP_003660002.1| phosphopantetheine-binding protein [Segniliparus rotundus DSM
           44985]
 gi|296182265|gb|ADG99171.1| phosphopantetheine-binding protein [Segniliparus rotundus DSM
           44985]
          Length = 128

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 24/116 (20%)

Query: 787 SCHKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
               IA +  +   ++ ++  E+   KS +D L   I S  ++ + +  E K  V I   
Sbjct: 5   EAEIIAGIADIIEEVTGIEPSEITPEKSFIDDL--DIDSLSMVEIAVQTEDKYGVTI-PD 61

Query: 844 EDLLDRFNAVDLA----------RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           EDL       D+              A+ +       R  + QSGG + ++A +AI
Sbjct: 62  EDLTSLRTVGDVVAYIQKLEEDNSEVAEKI-------RASL-QSGGKDSDEAKEAI 109


>gi|255283635|ref|ZP_05348190.1| putative plasmid recombination enzyme [Bryantella formatexigens DSM
           14469]
 gi|255265897|gb|EET59102.1| putative plasmid recombination enzyme [Bryantella formatexigens DSM
           14469]
          Length = 449

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 49/118 (41%), Gaps = 16/118 (13%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             +  +  +L   ++ LK     + G  E++  +  KL+    K + ++  + +    + 
Sbjct: 256 EAIRQEVSELSETSNLLKEQAATLAGDKEKLLSDNEKLEKQQKKLQQEIE-KMVQSKAVM 314

Query: 793 DVNFMSHIISE----------VDSKELKS-----VMDALQKKIQSGIIMLVGISKEKK 835
           + N  ++   E          + +K  K      +++ L++ I++  I  V ++++ K
Sbjct: 315 ERNIYAYDEDEKWQLPEPVTLMSAKAYKDKKASPLVEKLKETIKALTIKCVQLAEQGK 372


>gi|219520498|gb|AAI45070.1| 4921528I01Rik protein [Mus musculus]
          Length = 866

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            +  + E    + + L+    ++  +VE++ E   KL+  +AK ++ +
Sbjct: 215 AVQKEHENFSKINAELRSYLEDIALKVEQLQERKEKLEKANAKLQVDI 262


>gi|242011182|ref|XP_002426334.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510411|gb|EEB13596.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 1668

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 699  VSSTGEIMLLYIVSESSIRAGIRR--IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            +    E  L     E  + A + R  + A+   +A  ++   +E++  L   L      +
Sbjct: 1033 MDRLEECSLTCRQMEEQLSAALERASVSAVQLAKATENITILEEQINMLKEELGAKNAEL 1092

Query: 757  VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
              +      E  KL+    +  ++  ++ +   K  +         E   K+++++   +
Sbjct: 1093 EEK----KSEIIKLENKIEEITIESELKLIEAGKQREAAERKTFEVECKLKDVENMSKDV 1148

Query: 817  QKKIQSGIIMLVGISKEKK 835
            + K+      L G  K KK
Sbjct: 1149 ESKVNDLEKRLCGADKMKK 1167


>gi|156099226|ref|XP_001615615.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148804489|gb|EDL45888.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 3395

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
                 ++  L  LA  L+  + N    + E+     +L+      +L+ + E L+  K+ 
Sbjct: 1766 DAAEERENYLAELAQ-LRTEREN---YLTELQTREEELRKKCE--RLESDKEALTTEKMN 1819

Query: 793  DVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIM 826
             V  ++H+  +++  SK +K + + L+++ +  ++ 
Sbjct: 1820 SVLRINHLKEQLNRESKSVKELTNELRERGEEMVVC 1855


>gi|115313392|gb|AAI24481.1| LOC407656 protein [Danio rerio]
          Length = 547

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L     ++ +L   L+  +     +V+ + E+    ++      LQ    DL   +  
Sbjct: 279 EALQKALAEISTLTHTLEKQRLEHQQQVKGLEEQVNSSEVKKQLTALQRQT-DLLEEERK 337

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +     H  +E ++K+L+  ++ L+KK+Q
Sbjct: 338 EWQ-HKHTKAETEAKDLRFTVEELKKKLQ 365


>gi|148222862|ref|NP_001085151.1| myosin, heavy polypeptide 15 [Xenopus laevis]
 gi|59544096|gb|AAW88309.1| ventricular myosin heavy chain [Xenopus laevis]
          Length = 1937

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 729  QRARSHLMGQDEKLKSLAS---FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            + A++ L    ++ +SL++    LK +   V+  +E +  E + LQ   +    Q++  +
Sbjct: 1463 EEAQAELESSQKEARSLSTELFKLKNAYEEVLDILETVKRENKNLQEEISDLTDQISEGN 1522

Query: 786  LSCHKIADVN 795
             S H+I  V 
Sbjct: 1523 KSLHEIEKVK 1532


>gi|41107682|gb|AAH65472.1| LOC407656 protein [Danio rerio]
          Length = 546

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L     ++ +L   L+  +     +V+ + E+    ++      LQ    DL   +  
Sbjct: 261 EALQKALAEISTLTHTLEKQRLEHQQQVKGLEEQVNSSEVKKQLTALQRQT-DLLEEERK 319

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +     H  +E ++K+L+  ++ L+KK+Q
Sbjct: 320 EWQ-HKHTKAETEAKDLRFTVEELKKKLQ 347


>gi|63081111|gb|AAY30314.1| M protein [Streptococcus sp. NS31]
          Length = 484

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
             E   +  +R I  +   R         E+L      L  +   +  + +E  EE  K 
Sbjct: 150 FREKEHQEYVRNIAKVLEDRVHER-NTLKEELDKAQQGLTAANEELAKKQQEFEEELAKK 208

Query: 771 QLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           Q    K KL       +  D    K A+V  ++  ++  ++ E+K++ + L  K
Sbjct: 209 QQELEKEKLAKEGIIDSTYDYVKEKEAEVKTLTENLAAKEA-EVKTLTENLAAK 261


>gi|325849903|ref|ZP_08170942.1| rod shape-determining protein MreC [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325479927|gb|EGC83010.1| rod shape-determining protein MreC [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 276

 Score = 37.8 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 746 ASFLKVSQGNVVGR-----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN----- 795
           +  +K  +  +  +     +E++  E + L   +A     +N +D    +   +      
Sbjct: 57  SELIKAVEDTIGSKQTRSEIEKLKVENKNLLKENANLNEIINRKDFLKAEKKAMKDEKYD 116

Query: 796 FMSHIISEVDSKELKS--VMDALQKK-IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
           ++   I   D K ++    +D  +K  ++   ++L  I   + +S +I      + + NA
Sbjct: 117 YIKAQIISSDVKSMQESFFIDKGKKDGLKVNDVILQAIGDSEYSSAVIG----KVVKVNA 172


>gi|260801635|ref|XP_002595701.1| hypothetical protein BRAFLDRAFT_200993 [Branchiostoma floridae]
 gi|229280948|gb|EEN51713.1| hypothetical protein BRAFLDRAFT_200993 [Branchiostoma floridae]
          Length = 237

 Score = 37.8 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            S +  + +        L+    +    ++ + +E +KL+ ++ +    L  E+   + +
Sbjct: 116 LSKVEREKQDYDRKCGQLEAELVDKEDTIDRVTKEKKKLEELNQQTLEDLQAEEDKVNHL 175

Query: 792 ADVNF-MSHIISEVDS-----KELKSVMDALQKKIQSGI 824
             V   +   + E++      K+++  ++ ++KK++S +
Sbjct: 176 NKVKVKLETTLDELEDALDEEKKIRQEVERIKKKLESDL 214


>gi|47216948|emb|CAG04890.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 967

 Score = 37.8 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK-LQLNVEDLSCHKIAD 793
                 + ++    L  +   +  +++E+ +E + L+  + K K L  N ++     I +
Sbjct: 131 YEKDKCRYENANEALNKTIEELQVQLKEMAQENKSLEKSYEKEKCLHKNTKETLDQVIEE 190

Query: 794 VNFMSHIISEVDSKELKSVMDAL 816
           +       ++ ++KELK + D L
Sbjct: 191 LQGQLKQTTK-ENKELKEMGDEL 212


>gi|47211792|emb|CAF93706.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 941

 Score = 37.8 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK-LQLNVEDLSCHKIAD 793
                 + ++    L  +   +  +++E+ +E + L+  + K K L  N ++     I +
Sbjct: 145 YEKDKCRYENANEALNKTIEELQVQLKEMAQENKSLEKSYEKEKCLHKNTKETLDQVIEE 204

Query: 794 VNFMSHIISEVDSKELKSVMDAL 816
           +       ++ ++KELK + D L
Sbjct: 205 LQGQLKQTTK-ENKELKEMGDEL 226


>gi|237737635|ref|ZP_04568116.1| hydrolase [Fusobacterium mortiferum ATCC 9817]
 gi|229419515|gb|EEO34562.1| hydrolase [Fusobacterium mortiferum ATCC 9817]
          Length = 508

 Score = 37.8 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 35/92 (38%)

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
              +   +E   +A  + IE    + A S     ++++K+  + L   +  +  + E + 
Sbjct: 35  AKEIIENAEKDAQAKGKEIELKAKEHAYSIKEEAEKEIKNAKNELLQKEARLTKKEETLD 94

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
            +  KL+L   + +      +    +I  +  
Sbjct: 95  NKIEKLELKSQELEKTTEELEAKKEEIEAIKL 126


>gi|229156635|ref|ZP_04284723.1| hypothetical protein bcere0010_28200 [Bacillus cereus ATCC 4342]
 gi|228626804|gb|EEK83543.1| hypothetical protein bcere0010_28200 [Bacillus cereus ATCC 4342]
          Length = 884

 Score = 37.8 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 41/155 (26%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK------------LQL-------- 772
            +L  +  KL   A  LK  Q   V  ++   +E               L+         
Sbjct: 478 KYLENRKRKLTEEARKLKTKQEEHVIEIKSFEQELNDYKVSASFDEVLFLEKQSLLEERI 537

Query: 773 -----IHAKRKLQLNVEDLSCHKIADVNFM----SHIISEVDSKELKSVMDALQKKIQSG 823
                   KRK  L +         D++           + D+KEL+  +   + K +  
Sbjct: 538 STQSQEINKRKEALEIILKIEKLSNDISGYEKTSKVTYKQKDAKELRESIS--KNKARKD 595

Query: 824 II-----MLVGISKE-----KKASVLIVVTEDLLD 848
            +     +++   +E      K  + ++  ++LL+
Sbjct: 596 FVDTKYQVIISSIEEIEQVIAKIKLTVLSFKNLLN 630


>gi|313117393|ref|YP_004044376.1| Chromosome segregation protein (Spc25, Csm1, Pcs1) [Halogeometricum
           borinquense DSM 11551]
 gi|312294284|gb|ADQ68715.1| Chromosome segregation protein (Spc25, Csm1, Pcs1) [Halogeometricum
           borinquense DSM 11551]
          Length = 642

 Score = 37.8 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQL 781
              +  Q+ + + L + L   +  +  R   VEE+ +E  +LQ      + + 
Sbjct: 372 LREVNEQERRQEELTNRLSRLEDEIEERTATVEELQDERDELQEQVESLESEA 424


>gi|268839333|ref|NP_081892.2| hypothetical protein LOC70950 [Mus musculus]
 gi|219518510|gb|AAI45067.1| 4921528I01Rik protein [Mus musculus]
 gi|223461381|gb|AAI40994.1| 4921528I01Rik protein [Mus musculus]
          Length = 866

 Score = 37.8 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            +  + E    + + L+    ++  +VE++ E   KL+  +AK ++ +
Sbjct: 215 AVQKEHENFSKINAELRSYLEDIALKVEQLQERKEKLEKANAKLQVDI 262


>gi|195867559|ref|ZP_03079562.1| putative surface protein [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|195660803|gb|EDX54057.1| putative surface protein [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
          Length = 596

 Score = 37.8 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHK 790
               +  K +      ++  ++  + ++ +E ++LQ  +AK K        +L   K
Sbjct: 172 NKIAQLDKEIEDLKNSNKDELIAEITQLKDELKRLQDENAKLKEDYSSTKWELEAEK 228


>gi|145533881|ref|XP_001452685.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420384|emb|CAK85288.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1075

 Score = 37.8 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +R +  L  ++EK+      LK  Q  +   +E++  + ++L     +   +  + +   
Sbjct: 438 ERLKVQLKQKNEKILEQQEDLKNLQEQLGE-IEQLENQNQQLLKELEQ---KDKIIEELE 493

Query: 789 HKIADVNFMSHIISEVDSK 807
            K+ ++N +   +++ ++K
Sbjct: 494 QKLQELNVLEQKLADANNK 512


>gi|301615159|ref|XP_002937052.1| PREDICTED: myosin-4-like [Xenopus (Silurana) tropicalis]
          Length = 2323

 Score = 37.4 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                  +   L +    +K S    + ++E +  E + LQ   +    Q+     S H+I
Sbjct: 1375 LEASQKESRSLSTEVFKMKNSYEEALDQLETLKRENKNLQQEISDLTEQVAEAGKSIHEI 1434

Query: 792  ADVN 795
                
Sbjct: 1435 EKAK 1438



 Score = 37.4 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                  +   L +    +K S    + ++E +  E + LQ   +    Q+     S H+I
Sbjct: 1857 LEASQKESRSLSTEVFKMKNSYEEALDQLETLKRENKNLQQEISDLTEQVAEAGKSIHEI 1916

Query: 792  ADVN 795
                
Sbjct: 1917 EKAK 1920


>gi|206974629|ref|ZP_03235545.1| LPXTG-motif cell wall anchor domain protein [Bacillus cereus
           H3081.97]
 gi|206747272|gb|EDZ58663.1| LPXTG-motif cell wall anchor domain protein [Bacillus cereus
           H3081.97]
          Length = 372

 Score = 37.4 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QLIHAKRKLQLNVEDLSCHK 790
            + +    + +    + LK  + N+  +V E+ E  +++ + +   +K +   ED     
Sbjct: 146 VNEIKEHKQTVDEKVNELKQHKENIDQKVNELKEVKKQVDEKLAELKKAKQTAEDKLAEL 205

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
             +     + + E+  K++K  +D+L   ++     L     + K + L    +DL+++ 
Sbjct: 206 KENKPNTGNTLEEL--KKIKGNLDSLSANLE-----LAKQDVKNKLAALQEARQDLINKI 258

Query: 851 N 851
           N
Sbjct: 259 N 259


>gi|145523806|ref|XP_001447736.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415258|emb|CAK80339.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2045

 Score = 37.4 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            + +   L  +D+ L+      +    N   ++E++     +LQ  + +   +LN E L  
Sbjct: 1404 ENSIKELSEKDKLLQIQIEQYEKQSQNYTQQIEQLQSTLNQLQNEYQQLTSELNEEQLKN 1463

Query: 789  HKIADVN 795
             KI ++N
Sbjct: 1464 QKIIEIN 1470


>gi|50311213|ref|XP_455630.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644766|emb|CAG98338.1| KLLA0F12166p [Kluyveromyces lactis]
          Length = 1528

 Score = 37.4 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
            ++++LK + + L   +  V+ R+  +  E   LQL   + K++++ +      I     
Sbjct: 713 RENDELKDMDAILATMKDEVLDRIHTLQRENYSLQLESGQVKMEIDEDFEDAANIFQ--- 769

Query: 797 MSHIISEVDSKELKSVMDALQK 818
                     K +K + D L+ 
Sbjct: 770 ----------KNIKDITDDLKN 781


>gi|81900010|sp|Q8CDV0|CR034_MOUSE RecName: Full=Uncharacterized protein C18orf34 homolog
 gi|26325494|dbj|BAC26501.1| unnamed protein product [Mus musculus]
          Length = 866

 Score = 37.4 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 24/48 (50%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            +  + E    + + L+    ++  +VE++ E   KL+  +AK ++ +
Sbjct: 215 AVQKEHENFSKINAELRSYLEDIALKVEQLQERKEKLEKANAKLQVDI 262


>gi|19074369|ref|NP_585875.1| putative GTP-BINDING PROTEIN [Encephalitozoon cuniculi GB-M1]
 gi|19069011|emb|CAD25479.1| putative GTP-BINDING PROTEIN [Encephalitozoon cuniculi GB-M1]
          Length = 369

 Score = 37.4 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
                 +   + G  HV          +         IR IE +  +             
Sbjct: 101 GNHFLDNIRNVDGIFHVVR--CFEDTEVAHFEDGVDPIRDIEIVNEELRLKDYETMLRHE 158

Query: 743 KSLASFLKVSQGNVVGRVEEIWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           + ++  LK    +     +++ ++     R L+++ +    +    +     I+ +N ++
Sbjct: 159 EKVSKDLKCKPSD-----KKLKDQVALVRRILEILKSDWVNKHAFNEEEVGYISTLNLLT 213

Query: 799 HI----ISEVDSKE--LKSVMDALQK--KIQSGIIMLVGI---SKEKKASVLIVVTEDLL 847
                 ++ +  K+  ++     L+   K    +I+         E KA +     + + 
Sbjct: 214 VKNVVYLANISEKDYEMRRANKHLRAVLKYSEDVIVFSATYESVHESKAFL----NKLVK 269

Query: 848 DRFNAVDLAR 857
             + ++DL  
Sbjct: 270 KGYESLDLIN 279


>gi|332025287|gb|EGI65458.1| Nucleoprotein TPR [Acromyrmex echinatior]
          Length = 2277

 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/95 (10%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                G+ E  +     +  +   V   V  + E  ++L+  +++ + Q ++       +
Sbjct: 74  LEEYKGKLELTEKSNIEICSNLEEVKIEVHRLQESIKRLEKENSELRRQRDIATDEASAL 133

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                +     + + + +++ + +L  ++Q+ I  
Sbjct: 134 Q----LQVERRDTEIERMRTELSSLSNQLQTAIAA 164


>gi|331703922|ref|YP_004400609.1| transmembrane protein [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328802477|emb|CBW54632.1| Conserved hypothetical protein, predicted transmembrane protein
           [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 746

 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK--------LQLNVE 784
           + L  Q   LK   + L      +    +++ +   +L  ++ + K        ++  + 
Sbjct: 242 AELNQQKAVLKEKQTELNNLLDELNKNTDQLNKNNNELVNLNKQIKETEDQIQSIKDKIS 301

Query: 785 DLSCHKIADVNFMSHII--SEVDSKELKSVMDALQKKIQS 822
           +L   K AD+N ++  I   E + K+L++ +D    +I S
Sbjct: 302 ELKKEKQADINKVNSEIRNKEKEIKDLQTQLDQTNSQIGS 341


>gi|301168563|emb|CBW28153.1| putative exported protein [Bacteriovorax marinus SJ]
          Length = 644

 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 75/242 (30%), Gaps = 48/242 (19%)

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
                  +F         +  +   +  ++D   +      +    ++     +     +
Sbjct: 205 FNPEKSSKFLFASPVTDRNDYITYKDKVIDDKEGKWACTKIQEYGIKEGSEDESKYAFVS 264

Query: 671 KYNDRV---RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           +Y+      R       DG +++          ++ E+               RR+    
Sbjct: 265 QYDRDWQLARAACESAVDGDIYAVERLISKDTGNSSELQ--------------RRL---- 306

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK------LQLIHAKRKLQL 781
            +   + L         LA  LK     +V ++E+   +  K       +     R++  
Sbjct: 307 -KDVYARL---------LAKDLKSKSEEIVTKIEDKLAQLEKYNDPTNKKDKRKAREIAR 356

Query: 782 NVEDLSCHKIADV-----NFMSH------IISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            ++ LS     ++       ++        I +VDS   ++  D L+ +I++    L G+
Sbjct: 357 EIQSLSRRYNKEIAEPAKQVLAQSLAAYEEIEDVDSDAARNTRDILENRIETVTEALAGL 416

Query: 831 SK 832
           S 
Sbjct: 417 SD 418


>gi|290981700|ref|XP_002673568.1| alpha-actinin [Naegleria gruberi]
 gi|284087152|gb|EFC40824.1| alpha-actinin [Naegleria gruberi]
          Length = 852

 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 42/159 (26%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVV----GRVEEIWEEYRKLQLIHAK-RKLQLN 782
           G +          ++KS    LK  Q +V      + +E+ +  + L+ +  K   L   
Sbjct: 441 GDKIVEGRHEAAPEVKSTMDKLKNGQDDVKQKSDDKKQELDDRLKNLEALLGKCLDLAKK 500

Query: 783 VEDLS---------------CHKIADVNFMSHIISEVDS---------KELKSVMDALQK 818
            E L+                  + DV+    I+ +V++           +  ++D ++ 
Sbjct: 501 SEGLAMFLDDISLALLEPITASSVKDVDVFVDILGDVENRHAEQAPLLDAINQLVDEIKN 560

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN-AVDLA 856
                       +         V   DL ++F  A +L 
Sbjct: 561 ------------AGGDPNLYSAVNNNDLDNQFKEAGNLI 587


>gi|241955237|ref|XP_002420339.1| condensin complex subunit, putative; structural maintenance of
            chromosomes protein, putative [Candida dubliniensis CD36]
 gi|223643681|emb|CAX41414.1| condensin complex subunit, putative [Candida dubliniensis CD36]
          Length = 1368

 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 699  VSSTGEIMLLYIVSESSIRAGIRRIEAIT--GQRARSHLMGQDEKLKSLASFLKVSQGNV 756
               T    +     E+ I    + IE++T   + A + L   +E+ +SL S L      V
Sbjct: 989  HEKTSGDRMTVKKLENEINRHTKLIESLTIEQEEAEADLEKINEQQRSLLSKL----EEV 1044

Query: 757  VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM-SHIISEVDS-----KELK 810
              +++E+ +E    +    K K  L  +     +I     +   ++++++      K L 
Sbjct: 1045 NSKLKELEDERNDKEDKLEKMKHDLEEKQ---EQINKFKSVEIELLNKLEKCKGILKGLN 1101

Query: 811  SVMDALQKKIQSGII 825
              ++  ++ + + +I
Sbjct: 1102 QAIEQNKEDLDALVI 1116


>gi|221124724|ref|XP_002159891.1| PREDICTED: similar to viral A-type inclusion protein, partial [Hydra
            magnipapillata]
          Length = 2497

 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH 789
              L  Q+ + KS+ + LK+   ++   ++ + ++ ++L+ +     + + +L  E     
Sbjct: 1458 DILNQQNSEYKSVINELKLKVNDLEEEIKNLSQQKKQLEQMIQGNNETQKELLTEKDIAE 1517

Query: 790  KIADVNFMSHIISEVD 805
               +  ++ H I+E+ 
Sbjct: 1518 --NNSRYLQHKINELS 1531


>gi|160947276|ref|ZP_02094443.1| hypothetical protein PEPMIC_01209 [Parvimonas micra ATCC 33270]
 gi|158446410|gb|EDP23405.1| hypothetical protein PEPMIC_01209 [Parvimonas micra ATCC 33270]
          Length = 778

 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 735 LMGQDEKLKSLASF------LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +  +DE L  L+        L  S G ++  +E+I ++  +L+    +   +L+  + S 
Sbjct: 402 IAQKDELLNKLSQLSQGLTNLGNSYGTLLSGIEQISKKSTELKNSTQEFNSKLHQVENSI 461

Query: 789 HKIADVNFMSHIISEVDSKE--LKSVMDALQKKIQSG 823
             +     + + I  +++K   ++ V+D L  K + G
Sbjct: 462 KNLNSNISLENDIKNLEAKANNIQKVIDDLSNKNKDG 498


>gi|225679242|gb|EEH17526.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 421

 Score = 37.4 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 70/252 (27%), Gaps = 25/252 (9%)

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
            K   + V+   +          ++    ++          +  +LH  ++++   HV++
Sbjct: 143 NKGHEVMVYLTYLIDNYDNLPDIMIFMHSHRKSWHNEELLDSDAVLH--VNSLSNEHVTR 200

Query: 608 NGSCITPDGLRFDVT--HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            G        +           T  +    E        + L     +            
Sbjct: 201 QGYVNLRCHWQPGCPDWMHPRDTWEDAIKQEQIFISRSWKELFPTVELPQVLSQPCCAQF 260

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVH---------------SSALCGGTHVSSTGEIMLLYI 710
           AL   +     R   V + D  +H                  +  G HV    E +    
Sbjct: 261 ALTRERARAIPRSRYVFFRDWMLHTELSDFISGRVWEYLWQVVFAGQHVLCPAEHVCYCD 320

Query: 711 VSESSIRA--GIRRIEAITGQRARSH--LMGQDEKLKSLASFLKVSQ--GNVVGRVEEIW 764
                     G+ R + +  Q++     L    +++  +   +K       +V RV  + 
Sbjct: 321 TYGLCFGGIPGLDRYKDLVRQKSEKEMELDKLWKEMGEVKGAMKEDNLTQEIVDRVRALG 380

Query: 765 EEYRKLQLIHAK 776
            E R ++   A+
Sbjct: 381 GEIRGMKKEIAE 392


>gi|87116414|dbj|BAE79363.1| myosin heavy chain embryonic type 3 [Cyprinus carpio]
          Length = 1938

 Score = 37.4 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 24/64 (37%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
               +  +   L +    LK S   V+  +E +  E + LQ   +    QL     S H++
Sbjct: 1469 LESVQKESRSLSTELFKLKNSYEEVLDHLETMKRENKNLQEEISDLTEQLGESGKSIHEL 1528

Query: 792  ADVN 795
              + 
Sbjct: 1529 EKIR 1532


>gi|150017018|ref|YP_001309272.1| dihydroxyacetone kinase, L subunit [Clostridium beijerinckii NCIMB
           8052]
 gi|149903483|gb|ABR34316.1| dihydroxyacetone kinase, L subunit [Clostridium beijerinckii NCIMB
           8052]
          Length = 209

 Score = 37.4 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 49/154 (31%), Gaps = 30/154 (19%)

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
            ++ ++ E  +E +      ++    +   D   +       +   I + D  ++  +  
Sbjct: 10  EILEKISEKIDENKAY---LSELDAAIGDGDHGLNMSKGFKAVVEKIKDDDGNDIGGI-- 64

Query: 815 ALQKKIQSGIIMLVGISKE------KKASVLIVVTEDLLDRFNAVDLARLSAKVLGG--- 865
                ++   + LV             A +   V+ +     +  D A++  + L G   
Sbjct: 65  -----LKKSGMALVSNVGGASGPLYGTAFMKAAVSVNGKSEIDINDFAKMLDEALKGIKM 119

Query: 866 -GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            G G       Q+   +    D AI      +K+
Sbjct: 120 RGKG-------QA--DDKTMID-AIEPALKSIKE 143


>gi|326921222|ref|XP_003206861.1| PREDICTED: kinectin-like [Meleagris gallopavo]
          Length = 1367

 Score = 37.4 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
               +  +E  K L   ++ S  ++   VE + EE +  ++   K++ +    +L   +I 
Sbjct: 1172 KWKIKVEESQKELKQ-MRSSVASLEHEVERLKEEIK--EVETLKKEREHLESELEKAEIE 1228

Query: 793  DVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               ++S +      +ELK ++  LQKK+   
Sbjct: 1229 RSTYVSEV------RELKDLLTELQKKLDDS 1253


>gi|295135408|ref|YP_003586084.1| sensory transduction histidine kinase [Zunongwangia profunda
           SM-A87]
 gi|294983423|gb|ADF53888.1| sensory transduction histidine kinase [Zunongwangia profunda
           SM-A87]
          Length = 789

 Score = 37.4 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 61/178 (34%), Gaps = 26/178 (14%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
            ++IE +  +RA        +  + +         ++   + +     ++L      +  
Sbjct: 4   TKKIEIL--ERALEREKKARKLAEKILEEKSTELYDLSEALRQSNNRLKELLKEKTSQLE 61

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKEL-----KSVMDALQ----KKIQSGIIML--- 827
            + V  +  + I D+      +++     L     K V++ L+      ++         
Sbjct: 62  GVFVNIIDAYIIMDIQGNVLKMNQAAKDMLGYDNEKEVVNLLKLVHSDYVEYTAAAFKQL 121

Query: 828 --VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
              G     KA ++   T+D  ++     + +++A ++    G  +P  AQ    +  
Sbjct: 122 YHTGSYNNYKARII---TKDGTEK-----IVQINASIIYDREG--KPIAAQGVARDIT 169


>gi|312032370|ref|NP_001185690.1| shootin-1 [Danio rerio]
 gi|158563978|sp|Q6P0R8|SHOT1_DANRE RecName: Full=Shootin-1
          Length = 544

 Score = 37.4 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L     ++ +L   L+  +     +V+ + E+    ++      LQ    DL   +  
Sbjct: 259 EALQKALAEISTLTHTLEKQRLEHQQQVKGLEEQVNSSEVKKQLTALQRQT-DLLEEERK 317

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +     H  +E ++K+L+  ++ L+KK+Q
Sbjct: 318 EWQ-HKHTKAETEAKDLRFTVEELKKKLQ 345


>gi|146285338|gb|ABQ18247.1| unknown [Lygus lineolaris]
          Length = 185

 Score = 37.4 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 4/97 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK----LQLIHAKRKLQLNVE 784
             A + L    +KLK     LK    ++    E++ E  +     +     K     + +
Sbjct: 89  PDASAALKNIKDKLKEAQDKLKKDNPDIAKNAEKLGESIKNTWDSITQEVEKSYKDFSKK 148

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
                 I +V           + ELK  +D    K  
Sbjct: 149 GGKQEDIENVFKNIVDAGVKAANELKDGVDKAINKKP 185


>gi|14192753|gb|AAK54395.1| myosin heavy chain [Trichinella spiralis]
          Length = 552

 Score = 37.4 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                 ++  L +    LK SQ  ++ ++E +  E + L         QL     S H++
Sbjct: 167 LDASQRENRHLSTECFKLKNSQDELIEQIEAVRRENKNLVQEIKDITDQLGEGGRSVHEL 226

Query: 792 ADVNFMSHIISEVDSKELKSVMD 814
             V        E++ +EL+  +D
Sbjct: 227 QKV----VRRLELEKEELQQALD 245


>gi|118373012|ref|XP_001019700.1| hypothetical protein TTHERM_00136190 [Tetrahymena thermophila]
 gi|89301467|gb|EAR99455.1| hypothetical protein TTHERM_00136190 [Tetrahymena thermophila
           SB210]
          Length = 973

 Score = 37.4 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
            + +   +    +K     +  + E++ E+  +++    + K QL  + +  + I  +N 
Sbjct: 246 QEYQSQTNKNEQIKKHVSELNKQFEDLQEKLNQIEQEKDEYKTQLEKKSIQINTIQQIN- 304

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                     K LK  ++ LQ KIQ    +L 
Sbjct: 305 ----------KNLKGNLEQLQSKIQQQEAILA 326


>gi|118381728|ref|XP_001024024.1| Guanylate-binding protein, N-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89305791|gb|EAS03779.1| Guanylate-binding protein, N-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 1710

 Score = 37.4 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 47/115 (40%), Gaps = 15/115 (13%)

Query: 713 ESSIRAGIRRIEAITGQ--RARSHLMGQDEKLKSLASFL----KVSQGNVVGRVEEIWEE 766
           +       R I+A+     +A+   + Q ++L    S L    K  + +    +E++ E+
Sbjct: 820 QELKENHTREIKALENDFEKAKKRYIQQIDQLNEKNSELEMRNKFEEADFQKEIEQLKEQ 879

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHK---------IADVNFMSHIISEVDSKELKSV 812
            ++L+ ++ + + + +V +    K         I  +  +   I E+    +K +
Sbjct: 880 VQELKNVNQRLEEKNSVLEDEKQKSFKEVEERYINRIRLLEDEIEEIKQNAIKDI 934


>gi|2498896|sp|Q60563|SYCP1_MESAU RecName: Full=Synaptonemal complex protein 1; Short=SCP-1; AltName:
           Full=Meiotic chromosome synaptic protein
 gi|598125|gb|AAC42039.1| synaptonemal complex protein [Mesocricetus auratus]
          Length = 845

 Score = 37.4 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%)

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             Q + L++  + L+    N    +EE+ +E + L+   +    QLN  ++  +K+ 
Sbjct: 465 EKQMKILENKCNNLRKQAENKSKYIEELHQENKALKKKSSAESKQLNAYEIKVNKLQ 521


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.312    0.127    0.386 

Lambda     K      H
   0.267   0.0389    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,033,935,902
Number of Sequences: 13984884
Number of extensions: 410091723
Number of successful extensions: 1801309
Number of sequences better than 10.0: 8593
Number of HSP's better than 10.0 without gapping: 4380
Number of HSP's successfully gapped in prelim test: 4213
Number of HSP's that attempted gapping in prelim test: 1735636
Number of HSP's gapped (non-prelim): 32645
length of query: 898
length of database: 4,792,584,752
effective HSP length: 148
effective length of query: 750
effective length of database: 2,722,821,920
effective search space: 2042116440000
effective search space used: 2042116440000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 86 (37.8 bits)